Citrus Sinensis ID: 011989
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 473 | 2.2.26 [Sep-21-2011] | |||||||
| Q8L3X9 | 461 | 3-oxoacyl-[acyl-carrier-p | yes | no | 0.968 | 0.993 | 0.746 | 0.0 | |
| P56902 | 421 | 3-oxoacyl-[acyl-carrier-p | yes | no | 0.879 | 0.988 | 0.528 | 1e-117 | |
| O94297 | 426 | Putative 3-oxoacyl-[acyl- | yes | no | 0.883 | 0.981 | 0.485 | 1e-115 | |
| Q9NWU1 | 459 | 3-oxoacyl-[acyl-carrier-p | yes | no | 0.898 | 0.925 | 0.5 | 1e-113 | |
| Q9D404 | 459 | 3-oxoacyl-[acyl-carrier-p | yes | no | 0.868 | 0.895 | 0.501 | 1e-112 | |
| Q0VCA7 | 460 | 3-oxoacyl-[acyl-carrier-p | yes | no | 0.868 | 0.893 | 0.496 | 1e-105 | |
| O34340 | 413 | 3-oxoacyl-[acyl-carrier-p | yes | no | 0.864 | 0.990 | 0.462 | 1e-101 | |
| Q9KQH9 | 414 | 3-oxoacyl-[acyl-carrier-p | yes | no | 0.866 | 0.990 | 0.452 | 1e-100 | |
| P55338 | 415 | 3-oxoacyl-[acyl-carrier-p | yes | no | 0.864 | 0.985 | 0.452 | 2e-98 | |
| Q83E37 | 414 | 3-oxoacyl-[acyl-carrier-p | yes | no | 0.864 | 0.987 | 0.447 | 6e-97 |
| >sp|Q8L3X9|KASM_ARATH 3-oxoacyl-[acyl-carrier-protein] synthase, mitochondrial OS=Arabidopsis thaliana GN=KAS PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 691 bits (1782), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 350/469 (74%), Positives = 400/469 (85%), Gaps = 11/469 (2%)
Query: 1 MSNSSWRRLFFTRRFDLSRYFSSSSRAEVFDPPPLSPLRRVVVTGIGMVTPLGCGAETTW 60
M+ S+ RR R L+R+ S+SS RRVVVTG+GMVTPLG G ETTW
Sbjct: 1 MATSNLRRHLSASRLRLNRFISTSSSYHSH--------RRVVVTGLGMVTPLGRGVETTW 52
Query: 61 RRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSKVAAVVPCGISSGEFNEDSWLNS 120
RRLI GECGIR +T +DLKM +FD ET+L+ F QL+SKVAA VP G + GEF+E WLNS
Sbjct: 53 RRLIDGECGIRGLTLDDLKMKSFDEETKLYTFDQLSSKVAAFVPYGSNPGEFDEALWLNS 112
Query: 121 KDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICE 180
K ++A FI YA+CAADEAL DA+WLP+++ +KERTGVSIGGGIGSI D V+AAQ+ICE
Sbjct: 113 K---AVANFIGYAVCAADEALRDAEWLPTEEEEKERTGVSIGGGIGSICDIVEAAQLICE 169
Query: 181 KRLRRLSPFFIPRILINMASGHVSMKYGFQGPNHAAVTACATGAHSIGDAARMIQFGDSD 240
KRLRRLSPFFIP+IL+NMASGHVSMKYGFQGPNHAAVTACATGAHSIGDA RMIQFGD+D
Sbjct: 170 KRLRRLSPFFIPKILVNMASGHVSMKYGFQGPNHAAVTACATGAHSIGDATRMIQFGDAD 229
Query: 241 VMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDGFVIGEGSGVLVLEE 300
VMVAGGTESSIDALS+AGF +SRAL+TK+N +PQEASRPFDC RDGFVIGEGSGV+VLEE
Sbjct: 230 VMVAGGTESSIDALSVAGFSRSRALSTKFNSSPQEASRPFDCDRDGFVIGEGSGVIVLEE 289
Query: 301 LEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYVNA 360
EHAK+RGAKIYAE+ GYGMSGDAHHITQP DGKGA+LAMTRAL+QSGL +Q+DYVNA
Sbjct: 290 YEHAKRRGAKIYAELCGYGMSGDAHHITQPPEDGKGAVLAMTRALRQSGLCPNQIDYVNA 349
Query: 361 HATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLAIHHG 420
HATSTP+GD VEA AI+TVFS+HATSG+LAFSSTKGA GHLLGAAGAVEAIF++LAIHHG
Sbjct: 350 HATSTPIGDAVEARAIKTVFSEHATSGTLAFSSTKGATGHLLGAAGAVEAIFSILAIHHG 409
Query: 421 VAPLTLNLAKPDPIFNDNFMPLTASKDMPISAALSNSFGFGGTNASLLF 469
VAP+TLN+ PDPIF+ FMPLT SK M + A+SNSFGFGGTNASLLF
Sbjct: 410 VAPMTLNVKNPDPIFDKRFMPLTTSKKMLVRTAMSNSFGFGGTNASLLF 458
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Catalyzes all the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Able to elongate saturated acyl chains from 4 to at least 16 carbons. Uses malonyl-CoA but not acetyl-CoA as primer substrate. When expressed in a heterologous system, reveals a bimodal distribution of products, with peaks at C8 and C14-C16. Arabidopsis thaliana (taxid: 3702) EC: 2EC: .EC: 3EC: .EC: 1EC: .EC: 4EC: 1 |
| >sp|P56902|FABF_RHIME 3-oxoacyl-[acyl-carrier-protein] synthase 2 OS=Rhizobium meliloti (strain 1021) GN=fabF PE=3 SV=2 | Back alignment and function description |
|---|
Score = 423 bits (1087), Expect = e-117, Method: Compositional matrix adjust.
Identities = 230/435 (52%), Positives = 299/435 (68%), Gaps = 19/435 (4%)
Query: 38 LRRVVVTGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTS 97
+RRVV+TG GMV+PLGCG E +W RL+ G+ R++T F+ E L +
Sbjct: 1 MRRVVITGTGMVSPLGCGTEVSWARLLTGDNAARKVT-------EFEVE-------DLPA 46
Query: 98 KVAAVVPCGI-SSGEFNEDSWLNSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKER 156
K+A +P G S G FN D W+ K+ R + FI YA+ AAD AL DA W P +
Sbjct: 47 KIACRIPFGDGSDGTFNADDWMEPKEQRKVDPFIVYAMAAADMALADAGWKPESDEDQIS 106
Query: 157 TGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYGFQGPNHAA 216
TGV IG GIG + VDA + +K RR+SPFFIP LIN+A+G VS+++ +GPNH+
Sbjct: 107 TGVLIGSGIGGLEGIVDAGYTLRDKGPRRISPFFIPGRLINLAAGQVSIRHKLRGPNHSV 166
Query: 217 VTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEA 276
VTAC+TGAH+IGDA+R+I GD+DVMVAGGTES I +S+AGF +AL+T++N P++A
Sbjct: 167 VTACSTGAHAIGDASRLIALGDADVMVAGGTESPICRISLAGFAACKALSTQHNDNPEKA 226
Query: 277 SRPFDCGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKG 336
SRP+D RDGFV+GEG+G++VLEELEHA+ RGAKIYAEV GYG+SGDA HIT P DG+G
Sbjct: 227 SRPYDADRDGFVMGEGAGIVVLEELEHARARGAKIYAEVIGYGLSGDAFHITAPSEDGEG 286
Query: 337 AILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKG 396
A M ALK++G+ + +DY+NAH TST + DT+E A+ + D A+ ++ SSTK
Sbjct: 287 AYRCMQMALKRAGVTAADIDYINAHGTST-MADTIELGAVERLVGDSAS--RISMSSTKS 343
Query: 397 AIGHLLGAAGAVEAIFAVLAIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPISAALSN 456
AIGHLLGAAGAVEAIF+ LAI +AP TLNL P + +P A K I+ ALSN
Sbjct: 344 AIGHLLGAAGAVEAIFSALAIRDNIAPPTLNLDNPSVETKIDLVPHVARK-REINVALSN 402
Query: 457 SFGFGGTNASLLFTK 471
SFGFGGTNASL+ +
Sbjct: 403 SFGFGGTNASLILRR 417
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Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Has a preference for short chain acid substrates and may function to supply the octanoic substrates for lipoic acid biosynthesis. Rhizobium meliloti (strain 1021) (taxid: 266834) EC: 2 EC: . EC: 3 EC: . EC: 1 EC: . EC: 1 EC: 7 EC: 9 |
| >sp|O94297|OXSM_SCHPO Putative 3-oxoacyl-[acyl-carrier-protein] synthase, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC887.13c PE=3 SV=1 | Back alignment and function description |
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Score = 414 bits (1064), Expect = e-115, Method: Compositional matrix adjust.
Identities = 213/439 (48%), Positives = 291/439 (66%), Gaps = 21/439 (4%)
Query: 38 LRRVVVTGIGMVTPLGCGAETTWRRLIVGECGIREIT--PEDLKMGNFDRETQLHAFGQL 95
++RVV+TG+G VTPLG G +T WR LI G+ GI + PE + Q+
Sbjct: 1 MKRVVITGLGAVTPLGNGVKTNWRNLIQGKSGIVSLKGFPE---------------YEQI 45
Query: 96 TSKVAAVVPCGISSGEFNEDSWLNSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKE 155
SKVA V+P G E+N +++ R +A F AL +A EAL DA+W+ D+ +K
Sbjct: 46 PSKVAGVIPRGKEKEEWNVLDYVDQGKLREVATFTQLALTSAAEALKDARWIDIDEQEKL 105
Query: 156 RTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYGFQGPNHA 215
TGV G GIG++ D ++ ++ + +R++SP I +ILINM +G++S +YGF NH
Sbjct: 106 ATGVCFGTGIGNLDDALNENGVLNKAGIRKVSPRVISKILINMPAGYISQRYGFTALNHT 165
Query: 216 AVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQE 275
TACA G H+IGDA I+ G +DV++AGG+ES I+ L++AGF K+R+L+TK+N P+
Sbjct: 166 TTTACAAGCHAIGDAFNFIKLGHADVIIAGGSESCINPLTVAGFSKARSLSTKFNDNPKA 225
Query: 276 ASRPFDCGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGK 335
ASRPFD RDGFVIGEGS LVLEELEHAK R A IYAE+ GYG++ D++HIT P+ +G
Sbjct: 226 ASRPFDANRDGFVIGEGSAALVLEELEHAKNRNAHIYAEIVGYGLASDSYHITAPNPNGD 285
Query: 336 GAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSD-HATSGSLAFSST 394
A AM R+LKQ+GL + Q+DY+NAHATST LGD E+ AI + D + + SS+
Sbjct: 286 AAYYAMKRSLKQAGLSASQLDYINAHATSTKLGDVAESIAITRLLCDVNRNPEAFPVSSS 345
Query: 395 KGAIGHLLGAAGAVEAIFAVLAIHHGVAPLTLNLAKPD--PIFNDNFMPLTASKDMPISA 452
KG+IGHLLGAAGA+E+++ VL + GV P TLN D F +++P +K+ I+
Sbjct: 346 KGSIGHLLGAAGAIESVYTVLTVQKGVLPPTLNFEYSDIPQQFQCDYVP-NVAKESRINV 404
Query: 453 ALSNSFGFGGTNASLLFTK 471
ALSNSFGFGGTNASL F K
Sbjct: 405 ALSNSFGFGGTNASLCFKK 423
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May play a role in the biosynthesis of lipoic acid as well as longer chain fatty acids required for optimal mitochondrial function. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) EC: 2 EC: . EC: 3 EC: . EC: 1 EC: . EC: 4 EC: 1 |
| >sp|Q9NWU1|OXSM_HUMAN 3-oxoacyl-[acyl-carrier-protein] synthase, mitochondrial OS=Homo sapiens GN=OXSM PE=1 SV=1 | Back alignment and function description |
|---|
Score = 409 bits (1052), Expect = e-113, Method: Compositional matrix adjust.
Identities = 223/446 (50%), Positives = 292/446 (65%), Gaps = 21/446 (4%)
Query: 25 SRAEVFDPPPLSPL-RRVVVTGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNF 83
S+ + F P+S L RRVV+TGIG+VTPLG G W RLI GE GI + E+ K
Sbjct: 27 SKRKFFGTVPISRLHRRVVITGIGLVTPLGVGTHLVWDRLIGGESGIVSLVGEEYK---- 82
Query: 84 DRETQLHAFGQLTSKVAAVVPCGISSGEFNEDSWLNSKDHRSIARFIAYALCAADEALHD 143
+ VAA VP G G+FNE ++++ D +S++ A+ AA+ A+ D
Sbjct: 83 ----------SIPCSVAAYVPRGSDEGQFNEQNFVSKSDIKSMSSPTIMAIGAAELAMKD 132
Query: 144 AKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHV 203
+ W P + + TGV+IG G+ + + A K ++SPFF+P+IL+NMA+G V
Sbjct: 133 SGWHPQSEADQVATGVAIGMGMIPLEVVSETALNFQTKGYNKVSPFFVPKILVNMAAGQV 192
Query: 204 SMKYGFQGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSR 263
S++Y +GPNHA TAC TGAH++GD+ R I GD+DVMVAGGT+S I LS+AGF ++R
Sbjct: 193 SIRYKLKGPNHAVSTACTTGAHAVGDSFRFIAHGDADVMVAGGTDSCISPLSLAGFSRAR 252
Query: 264 ALTTKYNGTPQEASRPFDCGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGD 323
AL+T N P+ A RPF RDGFV+GEG+ VLVLEE EHA +R A+IYAEV GYG+SGD
Sbjct: 253 ALST--NSDPKLACRPFHPKRDGFVMGEGAAVLVLEEYEHAVQRRARIYAEVLGYGLSGD 310
Query: 324 AHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDH 383
A HIT P +G+GA+ M ALK +G+Q ++ Y+NAHATSTPLGD E AI+ +F DH
Sbjct: 311 AGHITAPDPEGEGALRCMAAALKDAGVQPEEISYINAHATSTPLGDAAENKAIKHLFKDH 370
Query: 384 ATSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLAIHHGVAPLTLNLAKPDPIFNDNFMPLT 443
A +LA SSTKGA GHLLGAAGAVEA F LA ++ P TLNL +P F+ N++PL
Sbjct: 371 AY--ALAVSSTKGATGHLLGAAGAVEAAFTTLACYYQKLPPTLNLDCSEPEFDLNYVPLK 428
Query: 444 AS--KDMPISAALSNSFGFGGTNASL 467
A K L+NSFGFGGTNA+L
Sbjct: 429 AQEWKTEKRFIGLTNSFGFGGTNATL 454
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May play a role in the biosynthesis of lipoic acid as well as longer chain fatty acids required for optimal mitochondrial function. Homo sapiens (taxid: 9606) EC: 2 EC: . EC: 3 EC: . EC: 1 EC: . EC: 4 EC: 1 |
| >sp|Q9D404|OXSM_MOUSE 3-oxoacyl-[acyl-carrier-protein] synthase, mitochondrial OS=Mus musculus GN=Oxsm PE=2 SV=1 | Back alignment and function description |
|---|
Score = 405 bits (1042), Expect = e-112, Method: Compositional matrix adjust.
Identities = 216/431 (50%), Positives = 287/431 (66%), Gaps = 20/431 (4%)
Query: 39 RRVVVTGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSK 98
RRVV+TGIG+VTPLG G + W RL+ GE GI + ++ K +
Sbjct: 42 RRVVITGIGLVTPLGVGTQLVWDRLLRGESGIVSVVGDEYK--------------NIPCS 87
Query: 99 VAAVVPCGISSGEFNEDSWLNSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERTG 158
VAA VP G G+FNE+++++ D +S++ A+ AA+ AL D+ W P + + TG
Sbjct: 88 VAAYVPRGPHEGQFNEENFVSKSDAKSMSSSTIMAVGAAELALKDSGWHPKREADQVATG 147
Query: 159 VSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYGFQGPNHAAVT 218
V+IG G+ + + A + K ++SPFF+P+ILINMA+G VS++Y +GPNH+ T
Sbjct: 148 VAIGMGMVPLEVISETALLFQTKGYNKVSPFFVPKILINMAAGQVSIRYKLKGPNHSVST 207
Query: 219 ACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASR 278
AC TGAH++GD+ R I GD+DVMVAGGT+S I LS+AGF ++RAL++ N P+ A R
Sbjct: 208 ACTTGAHAVGDSFRFIAHGDADVMVAGGTDSCISPLSLAGFSRARALSS--NPDPKLACR 265
Query: 279 PFDCGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAI 338
PF RDGFV+GEG+ VLVLEE EHA +RGA+IYAE+ GYG+SGDA HIT P +G+GA+
Sbjct: 266 PFHPERDGFVMGEGAAVLVLEEHEHAVQRGARIYAEILGYGLSGDAGHITAPDPEGEGAL 325
Query: 339 LAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKGAI 398
M A+K +G+ Q+ YVNAHATSTPLGD E AI+ +F DHA +LA SSTKGA
Sbjct: 326 RCMAAAVKDAGVSPEQISYVNAHATSTPLGDAAENRAIKRLFRDHAC--ALAISSTKGAT 383
Query: 399 GHLLGAAGAVEAIFAVLAIHHGVAPLTLNLAKPDPIFNDNFMPLTAS--KDMPISAALSN 456
GHLLGAAGAVEA F LA +H P TLNL +P F+ N++PL + K L+N
Sbjct: 384 GHLLGAAGAVEATFTALACYHQKLPPTLNLDCTEPEFDLNYVPLESQEWKAEGRCIGLTN 443
Query: 457 SFGFGGTNASL 467
SFGFGGTNA+L
Sbjct: 444 SFGFGGTNATL 454
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May play a role in the biosynthesis of lipoic acid as well as longer chain fatty acids required for optimal mitochondrial function. Mus musculus (taxid: 10090) EC: 2 EC: . EC: 3 EC: . EC: 1 EC: . EC: 4 EC: 1 |
| >sp|Q0VCA7|OXSM_BOVIN 3-oxoacyl-[acyl-carrier-protein] synthase, mitochondrial OS=Bos taurus GN=OXSM PE=2 SV=1 | Back alignment and function description |
|---|
Score = 381 bits (978), Expect = e-105, Method: Compositional matrix adjust.
Identities = 214/431 (49%), Positives = 280/431 (64%), Gaps = 20/431 (4%)
Query: 39 RRVVVTGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSK 98
RRVV+TGIG+VTPLG G + W RL+ GE GI + ++ + +
Sbjct: 43 RRVVITGIGLVTPLGVGTQLVWDRLVRGESGIVSLVGDE--------------YQSIPCS 88
Query: 99 VAAVVPCGISSGEFNEDSWLNSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERTG 158
VAA VP G G+FNE +++ D +S++ A+ AA+ AL DA W P + + TG
Sbjct: 89 VAAYVPRGCDEGQFNEQNFVPKSDTKSMSPPTVMAIAAAELALKDAGWHPQSEADQAATG 148
Query: 159 VSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYGFQGPNHAAVT 218
V+IG G+ + + A K ++SPFF+P+IL+NMASG VS+++ +GPNHA T
Sbjct: 149 VAIGMGMVPLEVISETALTFQTKGYSKVSPFFVPKILVNMASGQVSIRHKLKGPNHAVST 208
Query: 219 ACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASR 278
AC TGAH++GD+ R + GD+DVMVAGGT+S I LS+AGF ++RAL+T N P+ A R
Sbjct: 209 ACTTGAHAVGDSFRFVAHGDADVMVAGGTDSCISPLSLAGFARARALST--NTDPKSACR 266
Query: 279 PFDCGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAI 338
PF RDGFV+GEG+ VLVLEE HA +RGA++YAE+ GYG+SGDA HIT P G+GA
Sbjct: 267 PFHPQRDGFVMGEGAAVLVLEEHRHALRRGARVYAEIVGYGLSGDAGHITAPDPGGEGAF 326
Query: 339 LAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKGAI 398
M A+K +G+Q +V Y+NAHATSTPLGD E AI+ +F DHA LA SSTKGA
Sbjct: 327 RCMAAAVKDAGIQPEEVSYINAHATSTPLGDAAENKAIKQLFKDHAH--VLAVSSTKGAT 384
Query: 399 GHLLGAAGAVEAIFAVLAIHHGVAPLTLNLAKPDPIFNDNFMPLTAS--KDMPISAALSN 456
GHLLG AGA EA F LA +H P TLNL +P F+ N++PL A K AL+N
Sbjct: 385 GHLLGTAGAAEAAFTALACYHRKLPPTLNLDCTEPHFDLNYVPLKAQEWKAENRRIALTN 444
Query: 457 SFGFGGTNASL 467
SFGFGGTNA+L
Sbjct: 445 SFGFGGTNATL 455
|
May play a role in the biosynthesis of lipoic acid as well as longer chain fatty acids required for optimal mitochondrial function. Bos taurus (taxid: 9913) EC: 2 EC: . EC: 3 EC: . EC: 1 EC: . EC: 4 EC: 1 |
| >sp|O34340|FABF_BACSU 3-oxoacyl-[acyl-carrier-protein] synthase 2 OS=Bacillus subtilis (strain 168) GN=fabF PE=3 SV=1 | Back alignment and function description |
|---|
Score = 369 bits (948), Expect = e-101, Method: Compositional matrix adjust.
Identities = 201/435 (46%), Positives = 276/435 (63%), Gaps = 26/435 (5%)
Query: 39 RRVVVTGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSK 98
+RVVVTG+G ++PLG +T+W I G GI IT D + + +K
Sbjct: 4 KRVVVTGLGALSPLGNDVDTSWNNAINGVSGIGPITRVDAE--------------EYPAK 49
Query: 99 VAAVVPCGISSGEFNEDSWLNSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERTG 158
VAA + +FN + +++ K+ R + RF YA+ AA A+ DA +D+ R G
Sbjct: 50 VAAELK------DFNVEDYMDKKEARKMDRFTQYAVVAAKMAVEDADLNITDE-IAPRVG 102
Query: 159 VSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYGFQGPNHAAVT 218
V +G GIG + ++ K RR+SPFF+P ++ +MA+G +S+ G +G N VT
Sbjct: 103 VWVGSGIGGLETLESQFEIFLTKGPRRVSPFFVPMMIPDMATGQISIALGAKGVNSCTVT 162
Query: 219 ACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASR 278
ACATG +SIGDA ++IQ GD+DVMV GGTE+ + +S AGF ++AL+T N P+ ASR
Sbjct: 163 ACATGTNSIGDAFKVIQRGDADVMVTGGTEAPLTRMSFAGFSANKALST--NPDPKTASR 220
Query: 279 PFDCGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAI 338
PFD RDGFV+GEG+G++VLEELEHA RGAKIY E+ GYG +GDA+HIT P DG+G
Sbjct: 221 PFDKNRDGFVMGEGAGIIVLEELEHALARGAKIYGEIVGYGSTGDAYHITAPAQDGEGGA 280
Query: 339 LAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKGAI 398
AM A+K +G+ ++DY+NAH TST D E AI+TVF +HA LA SSTK
Sbjct: 281 RAMQEAIKDAGIAPEEIDYINAHGTSTYYNDKYETMAIKTVFGEHAH--KLAVSSTKSMT 338
Query: 399 GHLLGAAGAVEAIFAVLAIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPISAALSNSF 458
GHLLGAAG +EAIF++LAI GV P T+N+ PD + +++P A + ++ LSNS
Sbjct: 339 GHLLGAAGGIEAIFSILAIKEGVIPPTINIQTPDEECDLDYVPDEARR-QELNYVLSNSL 397
Query: 459 GFGGTNASLLFTKCQ 473
GFGG NA+L+F K Q
Sbjct: 398 GFGGHNATLIFKKYQ 412
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Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Bacillus subtilis (strain 168) (taxid: 224308) EC: 2 EC: . EC: 3 EC: . EC: 1 EC: . EC: 1 EC: 7 EC: 9 |
| >sp|Q9KQH9|FABF_VIBCH 3-oxoacyl-[acyl-carrier-protein] synthase 2 OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) GN=fabF PE=3 SV=3 | Back alignment and function description |
|---|
Score = 365 bits (937), Expect = e-100, Method: Compositional matrix adjust.
Identities = 196/433 (45%), Positives = 271/433 (62%), Gaps = 23/433 (5%)
Query: 39 RRVVVTGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSK 98
RRVVVTG+GM++P+G E++W+ L+ G+ GI I E NF +++
Sbjct: 4 RRVVVTGMGMLSPVGNTVESSWKALLAGQSGIVNI--EHFDTTNF------------STR 49
Query: 99 VAAVVPCGISSGEFNEDSWLNSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERTG 158
A +V F+ + +++ KD R + FI Y + A +AL D+ L ++ R G
Sbjct: 50 FAGLVKG------FDCEQYMSKKDARKMDLFIQYGIAAGIQALEDS-GLEVNEENAARIG 102
Query: 159 VSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYGFQGPNHAAVT 218
V+IG GIG + Q + EK R++SPFF+P ++NM +G++S+ G +GPN A T
Sbjct: 103 VAIGSGIGGLELIETGHQALIEKGPRKVSPFFVPSTIVNMIAGNLSIMRGLRGPNIAIST 162
Query: 219 ACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASR 278
AC TG H+IG AARMI +GD+D MVAGG E + L MAGF ++AL+T+ N PQ+ASR
Sbjct: 163 ACTTGLHNIGHAARMIAYGDADAMVAGGAEKASTPLGMAGFGAAKALSTR-NDEPQKASR 221
Query: 279 PFDCGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAI 338
P+D RDGFV+G+G+G++VLEE EHAK RGAKIYAEV G+GMSGDA+H+T P DG G
Sbjct: 222 PWDKDRDGFVLGDGAGIMVLEEYEHAKARGAKIYAEVVGFGMSGDAYHMTSPSEDGSGGA 281
Query: 339 LAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKGAI 398
LAM A++ +G+ Q+ YVNAH TSTP GD E I+ + T L SSTK
Sbjct: 282 LAMEAAMRDAGVTGEQIGYVNAHGTSTPAGDVAEVKGIKRALGEAGTKQVL-VSSTKSMT 340
Query: 399 GHLLGAAGAVEAIFAVLAIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPISAALSNSF 458
GHLLGAAG+VEAI V+++ + P T+NL P+ + +P A K + A+ NSF
Sbjct: 341 GHLLGAAGSVEAIITVMSLVDQMVPPTINLDNPEEGLGVDLVPHVARKVESMEYAMCNSF 400
Query: 459 GFGGTNASLLFTK 471
GFGGTN SL+F +
Sbjct: 401 GFGGTNGSLIFKR 413
|
Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Has a preference for short chain acid substrates and may function to supply the octanoic substrates for lipoic acid biosynthesis. Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) (taxid: 243277) EC: 2 EC: . EC: 3 EC: . EC: 1 EC: . EC: 1 EC: 7 EC: 9 |
| >sp|P55338|FABF_VIBHA 3-oxoacyl-[acyl-carrier-protein] synthase 2 OS=Vibrio harveyi GN=fabF PE=3 SV=2 | Back alignment and function description |
|---|
Score = 360 bits (923), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 197/435 (45%), Positives = 277/435 (63%), Gaps = 26/435 (5%)
Query: 39 RRVVVTGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSK 98
RRVVVTG+GM++P+G E++W+ L+ G+ GI I E NF +++
Sbjct: 4 RRVVVTGMGMLSPVGNTVESSWKALLEGQSGIVNI--EHFDATNF------------STR 49
Query: 99 VAAVVPCGISSGEFNEDSWLNSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERTG 158
A +V +F+ +++ KD R + FI Y + A +AL D+ +++ R G
Sbjct: 50 FAGLVK------DFDCTEYMSKKDARKMDLFIQYGIAAGIQALDDSGLEITEE-NAARVG 102
Query: 159 VSIGGGIGSISDTVDAAQ-MICEKRLRRLSPFFIPRILINMASGHVSMKYGFQGPNHAAV 217
V+IG GIG + D ++A + EK R++SPFF+P ++NM +G++S+ G +GPN A
Sbjct: 103 VAIGSGIGGL-DLIEAGHSALVEKGPRKVSPFFVPSTIVNMVAGNLSIMRGLRGPNIAIS 161
Query: 218 TACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEAS 277
TAC TG H+IG AARMI +GD++ MVAGG E + L MAGF ++AL+T+ N PQ+AS
Sbjct: 162 TACTTGLHNIGHAARMIAYGDAEAMVAGGAEKASTPLGMAGFGAAKALSTR-NDEPQKAS 220
Query: 278 RPFDCGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGA 337
RP+D GRDGFV+G+G+GV+VLEE EHAK RGAKIYAE+ G+GMSGDA+H+T P DG G
Sbjct: 221 RPWDKGRDGFVLGDGAGVMVLEEYEHAKARGAKIYAELVGFGMSGDAYHMTSPSEDGSGG 280
Query: 338 ILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKGA 397
LAM A++ + + QV YVNAH TSTP GD E ++ + + L SSTK
Sbjct: 281 ALAMEAAMRDANITGTQVGYVNAHGTSTPAGDVAEIKGVKRALGEEGSKQVL-VSSTKSM 339
Query: 398 IGHLLGAAGAVEAIFAVLAIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPISAALSNS 457
GHLLGAAG+VEAI VL++ + P T+NL P+ + + +P TA K + + A+ NS
Sbjct: 340 TGHLLGAAGSVEAIITVLSLVDQIVPPTINLDDPEEGLDIDLVPHTARK-VDMEYAICNS 398
Query: 458 FGFGGTNASLLFTKC 472
FGFGGTN SL+F K
Sbjct: 399 FGFGGTNGSLVFKKI 413
|
Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Has a preference for short chain acid substrates and may function to supply the octanoic substrates for lipoic acid biosynthesis. Vibrio harveyi (taxid: 669) EC: 2 EC: . EC: 3 EC: . EC: 1 EC: . EC: 1 EC: 7 EC: 9 |
| >sp|Q83E37|FABF_COXBU 3-oxoacyl-[acyl-carrier-protein] synthase 2 OS=Coxiella burnetii (strain RSA 493 / Nine Mile phase I) GN=fabF PE=1 SV=1 | Back alignment and function description |
|---|
Score = 355 bits (910), Expect = 6e-97, Method: Compositional matrix adjust.
Identities = 194/434 (44%), Positives = 272/434 (62%), Gaps = 25/434 (5%)
Query: 39 RRVVVTGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSK 98
RRVV+TG+G+V+PLG W+ L+ G+ G++ IT FD + ++
Sbjct: 4 RRVVITGLGVVSPLGNKVSDMWQALLAGKSGVKPIT-------RFDASS-------FPTQ 49
Query: 99 VAAVVPCGISSGEFNEDSWLNSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERTG 158
+AA V +F+ L+ K R F+ +A+ +A +A D+ L ++ R G
Sbjct: 50 IAAEV------RDFDPALVLDLKSIRKTDVFVQFAMESARQAWEDSG-LEINETNAPRVG 102
Query: 159 VSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYGFQGPNHAAVT 218
V+IG GIG + + R++SPFFIP +INMASG VS+KY +GPN + VT
Sbjct: 103 VAIGSGIGGMPWIEKNYDALLTSGPRKISPFFIPGAIINMASGMVSIKYDLKGPNISIVT 162
Query: 219 ACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASR 278
AC TG H+IG AARMI D+D M+AGGTE + L + GF RAL+T+ N P++ASR
Sbjct: 163 ACTTGLHNIGHAARMIAHNDADAMIAGGTEMASTPLGIGGFAAVRALSTR-NDEPEKASR 221
Query: 279 PFDCGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAI 338
P+D GRDGFV+GEG+ +V+EELEHAKKR A IYAE+ G+GMSGDA+H+T+P + +G
Sbjct: 222 PWDKGRDGFVLGEGAACVVVEELEHAKKRNATIYAEIIGFGMSGDAYHMTRPDPEAEGFT 281
Query: 339 LAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKGAI 398
M +L+ +G+ +VDY+NAH TSTP D +EA AI+ F DHA LA SSTK
Sbjct: 282 TCMKNSLRDAGIAPERVDYINAHGTSTPAADPLEARAIKKTFGDHAY--KLAVSSTKSMT 339
Query: 399 GHLLGAAGAVEAIFAVLAIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPISAALSNSF 458
GH+LGAAGA+E + +VLAI AP T+NL PD + +F+P +++M I +SNSF
Sbjct: 340 GHMLGAAGALETVISVLAIRDNTAPPTINLENPDEGCDLDFVP-NEAREMKIDTVMSNSF 398
Query: 459 GFGGTNASLLFTKC 472
GFGGTN +L+ ++
Sbjct: 399 GFGGTNGTLVLSRV 412
|
Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Has a preference for short chain acid substrates and may function to supply the octanoic substrates for lipoic acid biosynthesis. Coxiella burnetii (strain RSA 493 / Nine Mile phase I) (taxid: 227377) EC: 2 EC: . EC: 3 EC: . EC: 1 EC: . EC: 1 EC: 7 EC: 9 |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 473 | ||||||
| TAIR|locus:2058359 | 461 | AT2G04540 [Arabidopsis thalian | 0.968 | 0.993 | 0.665 | 1.5e-161 | |
| TIGR_CMR|SPO_2271 | 421 | SPO_2271 "3-oxoacyl-(acyl carr | 0.871 | 0.978 | 0.468 | 4.3e-93 | |
| ASPGD|ASPL0000064843 | 430 | AN7489 [Emericella nidulans (t | 0.832 | 0.916 | 0.463 | 1.9e-92 | |
| UNIPROTKB|E1BYY7 | 461 | OXSM "3-oxoacyl-[acyl-carrier- | 0.866 | 0.889 | 0.441 | 3e-92 | |
| UNIPROTKB|Q0C090 | 428 | fabF "3-oxoacyl-[acyl-carrier- | 0.868 | 0.960 | 0.464 | 2.5e-90 | |
| UNIPROTKB|E2R866 | 460 | OXSM "3-oxoacyl-[acyl-carrier- | 0.858 | 0.882 | 0.450 | 1.4e-87 | |
| UNIPROTKB|G3V6R7 | 456 | Oxsm "3-oxoacyl-[acyl-carrier- | 0.858 | 0.890 | 0.446 | 8.9e-86 | |
| UNIPROTKB|F1MXW5 | 460 | OXSM "3-oxoacyl-[acyl-carrier- | 0.858 | 0.882 | 0.438 | 1.1e-85 | |
| UNIPROTKB|Q0VCA7 | 460 | OXSM "3-oxoacyl-[acyl-carrier- | 0.858 | 0.882 | 0.438 | 1.1e-85 | |
| MGI|MGI:1918397 | 459 | Oxsm "3-oxoacyl-ACP synthase, | 0.858 | 0.884 | 0.438 | 1.8e-85 |
| TAIR|locus:2058359 AT2G04540 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1573 (558.8 bits), Expect = 1.5e-161, P = 1.5e-161
Identities = 312/469 (66%), Positives = 361/469 (76%)
Query: 1 MSNSSWRRLFFTRRFDLSRYFSSSSRAEVFDXXXXXXXXXXXXTGIGMVTPLGCGAETTW 60
M+ S+ RR R L+R+ S+SS TG+GMVTPLG G ETTW
Sbjct: 1 MATSNLRRHLSASRLRLNRFISTSS--------SYHSHRRVVVTGLGMVTPLGRGVETTW 52
Query: 61 RRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSKVAAVVPCGISSGEFNEDSWLNS 120
RRLI GECGIR +T +DLKM +FD ET+L+ F QL+SKVAA VP G + GEF+E WLNS
Sbjct: 53 RRLIDGECGIRGLTLDDLKMKSFDEETKLYTFDQLSSKVAAFVPYGSNPGEFDEALWLNS 112
Query: 121 KDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERTGVXXXXXXXXXXDTVDAAQMICE 180
K ++A FI YA+CAADEAL DA+WLP+++ +KERTGV D V+AAQ+ICE
Sbjct: 113 K---AVANFIGYAVCAADEALRDAEWLPTEEEEKERTGVSIGGGIGSICDIVEAAQLICE 169
Query: 181 KRLRRLSPFFIPRILINMASGHVSMKYGFQGPNHAAVTACATGAHSIGDAARMIQFGDSD 240
KRLRRLSPFFIP+IL+NMASGHVSMKYGFQGPNHAAVTACATGAHSIGDA RMIQFGD+D
Sbjct: 170 KRLRRLSPFFIPKILVNMASGHVSMKYGFQGPNHAAVTACATGAHSIGDATRMIQFGDAD 229
Query: 241 VMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDGFXXXXXXXXXXXXX 300
VMVAGGTESSIDALS+AGF +SRAL+TK+N +PQEASRPFDC RDGF
Sbjct: 230 VMVAGGTESSIDALSVAGFSRSRALSTKFNSSPQEASRPFDCDRDGFVIGEGSGVIVLEE 289
Query: 301 XXHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYVNA 360
HAK+RGAKIYAE+ GYGMSGDAHHITQP DGKGA+LAMTRAL+QSGL +Q+DYVNA
Sbjct: 290 YEHAKRRGAKIYAELCGYGMSGDAHHITQPPEDGKGAVLAMTRALRQSGLCPNQIDYVNA 349
Query: 361 HATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKXXXXXXXXXXXXVEAIFAVLAIHHG 420
HATSTP+GD VEA AI+TVFS+HATSG+LAFSSTK VEAIF++LAIHHG
Sbjct: 350 HATSTPIGDAVEARAIKTVFSEHATSGTLAFSSTKGATGHLLGAAGAVEAIFSILAIHHG 409
Query: 421 VAPLTLNLAKPDPIFNDNFMPLTASKDMPISAALSNSFGFGGTNASLLF 469
VAP+TLN+ PDPIF+ FMPLT SK M + A+SNSFGFGGTNASLLF
Sbjct: 410 VAPMTLNVKNPDPIFDKRFMPLTTSKKMLVRTAMSNSFGFGGTNASLLF 458
|
|
| TIGR_CMR|SPO_2271 SPO_2271 "3-oxoacyl-(acyl carrier protein) synthase II" [Ruegeria pomeroyi DSS-3 (taxid:246200)] | Back alignment and assigned GO terms |
|---|
Score = 927 (331.4 bits), Expect = 4.3e-93, P = 4.3e-93
Identities = 201/429 (46%), Positives = 260/429 (60%)
Query: 44 TGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSKVAAVV 103
TG+G++TPL G E TW RL+ G+ G IT FD A G +T+ A V
Sbjct: 7 TGLGLITPLASGVEETWSRLLEGQSGAGPIT-------RFDAV----ASG-VTTTYACEV 54
Query: 104 PCGISS-GEFNEDSWLNSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERTGVXXX 162
P G S G FN D W+ K+ R I FI Y++ AA+ A DA WLP D+ + RTGV
Sbjct: 55 PRGDGSDGTFNPDDWMAPKEQRKIEDFILYSIAAAEMACKDANWLPEDEEDRLRTGVLIG 114
Query: 163 XXXXXXXDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYGFQGPNHAAVTACAT 222
+ A +I EK RR+SPFFIP LIN+ASG VS+++GF+GPNH+ VTAC+T
Sbjct: 115 SGIGGLGSIAETANLIKEKGPRRVSPFFIPGALINLASGQVSIRHGFKGPNHSVVTACST 174
Query: 223 GAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDC 282
GAH+IGDA+R+I+ GD+DVM+AGG E+ I + +AGF +AL+TKY P+ ASRP+D
Sbjct: 175 GAHAIGDASRIIRAGDADVMIAGGGEACICEIGIAGFNACKALSTKYADNPKAASRPYDA 234
Query: 283 GRDGFXXXXXXXXXXXXXXXHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMT 342
RDGF HAK RGAKIYAEV GYGMSGDA+HIT P G GA +M
Sbjct: 235 DRDGFVMGEGAGIVVLEDYEHAKARGAKIYAEVLGYGMSGDAYHITAPSETGDGAERSMR 294
Query: 343 RALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKXXXXXXX 402
AL+ +GL+ +DY+NAH TST + DT+E A+ + +HA + + SSTK
Sbjct: 295 AALRSAGLEPSDLDYINAHGTST-MADTIELGAVERLLGNHAAN--VTMSSTKSATGHLL 351
Query: 403 XXXXXVEAIFAVLAIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPISAALSNSFGFGG 462
+EAIF++LAI VAP T+NL P + P A + I ALSNSFGFGG
Sbjct: 352 GAAGAIEAIFSILAIRDQVAPPTINLDNPAVETPVDLAP-NAKRARKIDVALSNSFGFGG 410
Query: 463 TNASLLFTK 471
TNAS++F K
Sbjct: 411 TNASVIFGK 419
|
|
| ASPGD|ASPL0000064843 AN7489 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Score = 921 (329.3 bits), Expect = 1.9e-92, P = 1.9e-92
Identities = 195/421 (46%), Positives = 254/421 (60%)
Query: 55 GAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSKVAAVVPCGI-SSGEFN 113
G TW+RL+ G CGI I D + + L ++AAVVP G + G +
Sbjct: 30 GVRRTWKRLLDGHCGIVNIRHRDAR------------YADLPCEIAAVVPSGARAEGRWT 77
Query: 114 EDSWLNSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERTGVXXXXXXXXXXDTVD 173
WL+ D R +ARF YA+ AA+EAL DA+W P + Q E TGV + D
Sbjct: 78 ASEWLSKDDERKMARFAQYAMAAAEEALEDAEWKPKAEDQLEATGVCLGSGIGNFDEIYD 137
Query: 174 AAQMICEKRLRRLSPFFIPRILINMASGHVSMKYGFQGPNHAAVTACATGAHSIGDAARM 233
A K ++LSP F+P++LIN+ +GH+SMKYGF GPNH+A TAC TGAHSIGDAAR
Sbjct: 138 AVVAYDTKGYKKLSPLFVPKLLINLGAGHISMKYGFMGPNHSATTACTTGAHSIGDAARF 197
Query: 234 IQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDGFXXXXXX 293
I GD+DVM+AGG ES I L++ GF ++R+L T YN P+++SRPFD RDGF
Sbjct: 198 IACGDADVMLAGGAESCIHPLAIGGFARARSLATAYNDRPEKSSRPFDADRDGFVVGEE- 256
Query: 294 XXXXXXXXXHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSH 353
HAK RGA+IYAEV+GYG SGDAHH+T P +G GA+LAM +ALK + L+
Sbjct: 257 ---------HAKARGARIYAEVKGYGCSGDAHHMTAPKANGGGALLAMKKALKNACLEPS 307
Query: 354 QVDYVNAHATSTPLGDTVEATAIRTVF---SDHATSGSLAFSSTKXXXXXXXXXXXXVEA 410
VDY+NAHATST +GD E AI+ + + + SSTK VEA
Sbjct: 308 AVDYINAHATSTVIGDAAENAAIKALLLGPGGKQKAADVNVSSTKGAIGHLLGGAGAVEA 367
Query: 411 IFAVLAIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPISAALSNSFGFGGTNASLLFT 470
+F VLAIH V P T+NL + + F+ N+ P A ++ I AL+NSFGFGGTN+SL F+
Sbjct: 368 LFTVLAIHENVMPPTINLDRLNDGFDFNYAPNEA-QERRIDLALTNSFGFGGTNSSLCFS 426
Query: 471 K 471
K
Sbjct: 427 K 427
|
|
| UNIPROTKB|E1BYY7 OXSM "3-oxoacyl-[acyl-carrier-protein] synthase" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 919 (328.6 bits), Expect = 3.0e-92, P = 3.0e-92
Identities = 189/428 (44%), Positives = 261/428 (60%)
Query: 44 TGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSKVAAVV 103
TGIG+V+PLG G + W+RL+ G+ GI + E+ + + +VAA V
Sbjct: 47 TGIGLVSPLGVGTQLVWKRLLQGDSGIASLDGEE--------------YAGVPCRVAACV 92
Query: 104 PCGISSGEFNEDSWLNSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERTGVXXXX 163
P G G F E+S+++ + +S++ A+ AA+ A+ D+ W P + R GV
Sbjct: 93 PRGDEEGHFKEESFVSKSEIKSMSSATVMAIGAAELAMKDSGWSPQSEEDHLRAGVAIGM 152
Query: 164 XXXXXXDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYGFQGPNHAAVTACATG 223
+ D A + K ++SPFF+P+IL+NMA+GH+S+KY +GPNHA TAC TG
Sbjct: 153 GMVPLEEISDTASLFKTKGYSKVSPFFVPKILVNMAAGHISIKYQLKGPNHAVSTACTTG 212
Query: 224 AHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCG 283
AH+IGD+ R I GD+DVM+AGGTE+ I LS+AGF ++RAL+T +N +P++A RPFD
Sbjct: 213 AHAIGDSFRFIALGDADVMLAGGTEACISPLSLAGFARARALSTGFNASPKKACRPFDSQ 272
Query: 284 RDGFXXXXXXXXXXXXXXXHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTR 343
R+GF HA +RGA+IYAEV GYG+SGDA HIT P+ +G GA M+
Sbjct: 273 REGFVMGEGAAVLVLEEYRHAVQRGARIYAEVLGYGLSGDACHITAPNPEGDGAFRCMSA 332
Query: 344 ALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKXXXXXXXX 403
A+K SG++ V YVNAHATSTPLGD E AI+ +F H S ++A SSTK
Sbjct: 333 AIKDSGIKPEDVTYVNAHATSTPLGDAAENQAIKKLFKSH--SHNIAVSSTKGATGHLLG 390
Query: 404 XXXXVEAIFAVLAIHHGVAPLTLNLAKPDPIFNDNFMPLTAS--KDMPISAALSNSFGFG 461
+EA F L+ +H + P TLNL K +P F+ N++PLTA K AL+NSFGFG
Sbjct: 391 AAGAIEAAFTALSCYHAILPPTLNLEKTEPEFDLNYVPLTAQEWKTEKRRVALTNSFGFG 450
Query: 462 GTNASLLF 469
GTNA+L F
Sbjct: 451 GTNATLCF 458
|
|
| UNIPROTKB|Q0C090 fabF "3-oxoacyl-[acyl-carrier-protein] synthase 2" [Hyphomonas neptunium ATCC 15444 (taxid:228405)] | Back alignment and assigned GO terms |
|---|
Score = 901 (322.2 bits), Expect = 2.5e-90, P = 2.5e-90
Identities = 202/435 (46%), Positives = 255/435 (58%)
Query: 44 TGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSKVAAVV 103
TGIG+V+PL G E TW RLI G+ G K+ NFD L K+A V
Sbjct: 9 TGIGIVSPLANGREATWERLIAGKSGAG-------KIDNFDAS-------DLPCKIAFQV 54
Query: 104 P--CGISSGE-----FNEDSWLNSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKER 156
P G GE F+ D L+SK+ R I FI Y + AADEAL D+ QKER
Sbjct: 55 PWASGRGGGEGDEHAFDPDKVLSSKEQRRIDEFILYGIAAADEALADSGLKLETDDQKER 114
Query: 157 TGVXXXXXXXXXXDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYGFQGPNHAA 216
GV + + + E R++SPFFIP LIN+ASG +S+++G +GPNH+
Sbjct: 115 AGVMIGSGIGGLETIYETSITLHEHGPRKVSPFFIPASLINLASGQISIRHGLKGPNHSV 174
Query: 217 VTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEA 276
VTACATGAH+IGD+AR+I +GD+DVMVAGG E+ I L +AGFC ++A++T +N TP++A
Sbjct: 175 VTACATGAHAIGDSARLISYGDADVMVAGGAEAVIGRLGIAGFCAAKAMSTSFNDTPEKA 234
Query: 277 SRPFDCGRDGFXXXXXXXXXXXXXXXHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKG 336
SRP+D RDGF HAK RGAKIYAEV GYG++GDAHHIT P +G
Sbjct: 235 SRPYDKDRDGFVMGEGAAVLVLEEYEHAKARGAKIYAEVAGYGLTGDAHHITAPAEGAEG 294
Query: 337 AILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKX 396
AM ALK SG+ ++DYVNAH TSTP GD EA A+ F DHA + ++ SSTK
Sbjct: 295 GYRAMKMALKNSGIDPAEIDYVNAHGTSTPKGDEGEAGAVERAFGDHAKN--ISMSSTKS 352
Query: 397 XXXXXXXXXXXVEAIFAVLAIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPISAALSN 456
+EA F LAI V P TLNL P + +P A K + AA+SN
Sbjct: 353 AVGHLLGAAGAIEAAFCALAIRDQVMPPTLNLDNPSFETVLDLIPHKAKKGR-VRAAMSN 411
Query: 457 SFGFGGTNASLLFTK 471
SFGFGGTNASL+ K
Sbjct: 412 SFGFGGTNASLVLRK 426
|
|
| UNIPROTKB|E2R866 OXSM "3-oxoacyl-[acyl-carrier-protein] synthase, mitochondrial" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 875 (313.1 bits), Expect = 1.4e-87, P = 1.4e-87
Identities = 192/426 (45%), Positives = 253/426 (59%)
Query: 44 TGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSKVAAVV 103
TGIG+VTPLG G + W RLI GE GI + E+ K + VAA V
Sbjct: 48 TGIGLVTPLGVGTQLVWDRLIRGESGIMSLVGEEYK--------------SIPCSVAAYV 93
Query: 104 PCGISSGEFNEDSWLNSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERTGVXXXX 163
P G G+FNE ++++ D +S++ A+ AA+ A+ D+ WLP + + TGV
Sbjct: 94 PRGCDEGQFNEQNFVSKSDIKSMSSPTIMAIGAAELAMRDSGWLPQSEADQAATGVAIGM 153
Query: 164 XXXXXXDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYGFQGPNHAAVTACATG 223
+ A M K ++SPFF+P+IL+NMA+G VS++Y +GPNHA TAC TG
Sbjct: 154 GMVPLEIVSETALMFQTKGYSKVSPFFVPKILVNMAAGQVSIRYKLKGPNHAVSTACTTG 213
Query: 224 AHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCG 283
AH++GD+ R I GD+DVMVAGGT+S I LS+AGF ++RAL+T N P+ A RPF
Sbjct: 214 AHAVGDSFRFIAQGDADVMVAGGTDSCISPLSLAGFSRARALST--NPDPKLACRPFHPK 271
Query: 284 RDGFXXXXXXXXXXXXXXXHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTR 343
RDGF HA +RGA+IYAEV GYG+SGDA HIT P +G+GA+ M
Sbjct: 272 RDGFVMGEGAAVLVLEEYDHAVQRGARIYAEVLGYGLSGDAGHITAPDPEGEGALRCMAA 331
Query: 344 ALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKXXXXXXXX 403
A+K +G+Q ++ YVNAHATSTPLGD E AI+ +F DHA + LA SSTK
Sbjct: 332 AVKDAGVQPEEISYVNAHATSTPLGDAAENKAIKHLFKDHAPA--LAVSSTKGATGHLLG 389
Query: 404 XXXXVEAIFAVLAIHHGVAPLTLNLAKPDPIFNDNFMPLTAS--KDMPISAALSNSFGFG 461
VEA F LA ++ P TLNL +P F+ N++PL A K L+NSFGFG
Sbjct: 390 AAGAVEAAFTALACYYQKLPPTLNLDCTEPEFDLNYVPLKAQEWKIEKRCIGLTNSFGFG 449
Query: 462 GTNASL 467
GTNA+L
Sbjct: 450 GTNATL 455
|
|
| UNIPROTKB|G3V6R7 Oxsm "3-oxoacyl-[acyl-carrier-protein] synthase, mitochondrial" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 858 (307.1 bits), Expect = 8.9e-86, P = 8.9e-86
Identities = 190/426 (44%), Positives = 251/426 (58%)
Query: 44 TGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSKVAAVV 103
TGIG+VTPLG G + W RL+ GE GI + ++ K + VAA V
Sbjct: 44 TGIGLVTPLGVGTQLVWDRLLRGESGIVSVVGDEYK--------------SIPCSVAAFV 89
Query: 104 PCGISSGEFNEDSWLNSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERTGVXXXX 163
P G G+FNE ++++ D +S++ A+ AA+ AL D+ W P + + TGV
Sbjct: 90 PRGSDKGQFNEQNFVSKSDAKSMSSPTIMAVGAAELALKDSGWYPKLEADQVATGVAIGM 149
Query: 164 XXXXXXDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYGFQGPNHAAVTACATG 223
+ A M K ++SPFF+P+ILINMA+G VS++Y +GPNH+ TAC TG
Sbjct: 150 GMVPLEVVSETALMFQTKGYSKVSPFFVPKILINMAAGQVSIRYKLKGPNHSVSTACTTG 209
Query: 224 AHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCG 283
AH++GD+ R+I GD+DVMVAGGT+S I LS+AGF ++RAL+T N P+ A RPF
Sbjct: 210 AHAVGDSFRLIAHGDADVMVAGGTDSCISPLSLAGFSRARALST--NPDPKLACRPFHPE 267
Query: 284 RDGFXXXXXXXXXXXXXXXHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTR 343
RDGF HA +RGA+IYAEV GYG+SGDA HIT P +G+GA+ M
Sbjct: 268 RDGFVMGEGAAVLVLEEHEHAVQRGARIYAEVLGYGLSGDAGHITAPDPEGEGALRCMAA 327
Query: 344 ALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKXXXXXXXX 403
A+K +G+ Q+ YVNAHATSTPLGD E AI+ +F DHA + LA SSTK
Sbjct: 328 AVKDAGVSPDQISYVNAHATSTPLGDAAENRAIKRLFRDHARA--LAISSTKGATGHLLG 385
Query: 404 XXXXVEAIFAVLAIHHGVAPLTLNLAKPDPIFNDNFMPLTAS--KDMPISAALSNSFGFG 461
VEA F LA +H P TLNL + F+ N++PL A K L+NSFGFG
Sbjct: 386 AAGAVEAAFTALACYHHKLPPTLNLDCTEAEFDLNYVPLEAQEWKTEGRCIGLTNSFGFG 445
Query: 462 GTNASL 467
GTNA+L
Sbjct: 446 GTNATL 451
|
|
| UNIPROTKB|F1MXW5 OXSM "3-oxoacyl-[acyl-carrier-protein] synthase, mitochondrial" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 857 (306.7 bits), Expect = 1.1e-85, P = 1.1e-85
Identities = 187/426 (43%), Positives = 247/426 (57%)
Query: 44 TGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSKVAAVV 103
TGIG+VTPLG G + W RL+ GE GI + ++ + + VAA V
Sbjct: 48 TGIGLVTPLGVGTQLVWDRLVRGESGIVSLVGDE--------------YQSIPCSVAAYV 93
Query: 104 PCGISSGEFNEDSWLNSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERTGVXXXX 163
P G G+FNE +++ D +S++ A+ AA+ AL DA W P + + TGV
Sbjct: 94 PRGCDEGQFNEQNFVPKSDTKSMSPPTVMAIAAAELALKDAGWHPQSEADQAATGVAIGM 153
Query: 164 XXXXXXDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYGFQGPNHAAVTACATG 223
+ A K ++SPFF+P+IL+NMASG VS+++ +GPNHA TAC TG
Sbjct: 154 GMVPLEVISETALTFQTKGYSKVSPFFVPKILVNMASGQVSIRHKLKGPNHAVSTACTTG 213
Query: 224 AHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCG 283
AH++GD+ R + GD+DVMVAGGT+S I LS+AGF ++RAL+T N P+ A RPF
Sbjct: 214 AHAVGDSFRFVAHGDADVMVAGGTDSCISPLSLAGFARARALST--NTDPKSACRPFHPQ 271
Query: 284 RDGFXXXXXXXXXXXXXXXHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTR 343
RDGF HA +RGA++YAE+ GYG+SGDA HIT P G+GA M
Sbjct: 272 RDGFVMGEGAAVLVLEEHRHALRRGARVYAEIVGYGLSGDAGHITAPDPGGEGAFRCMAA 331
Query: 344 ALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKXXXXXXXX 403
A+K +G+Q +V Y+NAHATSTPLGD E AI+ +F DHA LA SSTK
Sbjct: 332 AVKDAGIQPEEVSYINAHATSTPLGDAAENKAIKQLFKDHAHV--LAVSSTKGATGHLLG 389
Query: 404 XXXXVEAIFAVLAIHHGVAPLTLNLAKPDPIFNDNFMPLTAS--KDMPISAALSNSFGFG 461
EA F LA +H P TLNL +P F+ N++PL A K AL+NSFGFG
Sbjct: 390 AAGAAEAAFTALACYHRKLPPTLNLDCTEPHFDLNYVPLKAQEWKAENRRIALTNSFGFG 449
Query: 462 GTNASL 467
GTNA+L
Sbjct: 450 GTNATL 455
|
|
| UNIPROTKB|Q0VCA7 OXSM "3-oxoacyl-[acyl-carrier-protein] synthase, mitochondrial" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 857 (306.7 bits), Expect = 1.1e-85, P = 1.1e-85
Identities = 187/426 (43%), Positives = 247/426 (57%)
Query: 44 TGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSKVAAVV 103
TGIG+VTPLG G + W RL+ GE GI + ++ + + VAA V
Sbjct: 48 TGIGLVTPLGVGTQLVWDRLVRGESGIVSLVGDE--------------YQSIPCSVAAYV 93
Query: 104 PCGISSGEFNEDSWLNSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERTGVXXXX 163
P G G+FNE +++ D +S++ A+ AA+ AL DA W P + + TGV
Sbjct: 94 PRGCDEGQFNEQNFVPKSDTKSMSPPTVMAIAAAELALKDAGWHPQSEADQAATGVAIGM 153
Query: 164 XXXXXXDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYGFQGPNHAAVTACATG 223
+ A K ++SPFF+P+IL+NMASG VS+++ +GPNHA TAC TG
Sbjct: 154 GMVPLEVISETALTFQTKGYSKVSPFFVPKILVNMASGQVSIRHKLKGPNHAVSTACTTG 213
Query: 224 AHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCG 283
AH++GD+ R + GD+DVMVAGGT+S I LS+AGF ++RAL+T N P+ A RPF
Sbjct: 214 AHAVGDSFRFVAHGDADVMVAGGTDSCISPLSLAGFARARALST--NTDPKSACRPFHPQ 271
Query: 284 RDGFXXXXXXXXXXXXXXXHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTR 343
RDGF HA +RGA++YAE+ GYG+SGDA HIT P G+GA M
Sbjct: 272 RDGFVMGEGAAVLVLEEHRHALRRGARVYAEIVGYGLSGDAGHITAPDPGGEGAFRCMAA 331
Query: 344 ALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKXXXXXXXX 403
A+K +G+Q +V Y+NAHATSTPLGD E AI+ +F DHA LA SSTK
Sbjct: 332 AVKDAGIQPEEVSYINAHATSTPLGDAAENKAIKQLFKDHAHV--LAVSSTKGATGHLLG 389
Query: 404 XXXXVEAIFAVLAIHHGVAPLTLNLAKPDPIFNDNFMPLTAS--KDMPISAALSNSFGFG 461
EA F LA +H P TLNL +P F+ N++PL A K AL+NSFGFG
Sbjct: 390 TAGAAEAAFTALACYHRKLPPTLNLDCTEPHFDLNYVPLKAQEWKAENRRIALTNSFGFG 449
Query: 462 GTNASL 467
GTNA+L
Sbjct: 450 GTNATL 455
|
|
| MGI|MGI:1918397 Oxsm "3-oxoacyl-ACP synthase, mitochondrial" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 855 (306.0 bits), Expect = 1.8e-85, P = 1.8e-85
Identities = 187/426 (43%), Positives = 252/426 (59%)
Query: 44 TGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSKVAAVV 103
TGIG+VTPLG G + W RL+ GE GI + ++ K + VAA V
Sbjct: 47 TGIGLVTPLGVGTQLVWDRLLRGESGIVSVVGDEYK--------------NIPCSVAAYV 92
Query: 104 PCGISSGEFNEDSWLNSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERTGVXXXX 163
P G G+FNE+++++ D +S++ A+ AA+ AL D+ W P + + TGV
Sbjct: 93 PRGPHEGQFNEENFVSKSDAKSMSSSTIMAVGAAELALKDSGWHPKREADQVATGVAIGM 152
Query: 164 XXXXXXDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYGFQGPNHAAVTACATG 223
+ A + K ++SPFF+P+ILINMA+G VS++Y +GPNH+ TAC TG
Sbjct: 153 GMVPLEVISETALLFQTKGYNKVSPFFVPKILINMAAGQVSIRYKLKGPNHSVSTACTTG 212
Query: 224 AHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCG 283
AH++GD+ R I GD+DVMVAGGT+S I LS+AGF ++RAL++ N P+ A RPF
Sbjct: 213 AHAVGDSFRFIAHGDADVMVAGGTDSCISPLSLAGFSRARALSS--NPDPKLACRPFHPE 270
Query: 284 RDGFXXXXXXXXXXXXXXXHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTR 343
RDGF HA +RGA+IYAE+ GYG+SGDA HIT P +G+GA+ M
Sbjct: 271 RDGFVMGEGAAVLVLEEHEHAVQRGARIYAEILGYGLSGDAGHITAPDPEGEGALRCMAA 330
Query: 344 ALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKXXXXXXXX 403
A+K +G+ Q+ YVNAHATSTPLGD E AI+ +F DHA + LA SSTK
Sbjct: 331 AVKDAGVSPEQISYVNAHATSTPLGDAAENRAIKRLFRDHACA--LAISSTKGATGHLLG 388
Query: 404 XXXXVEAIFAVLAIHHGVAPLTLNLAKPDPIFNDNFMPLTAS--KDMPISAALSNSFGFG 461
VEA F LA +H P TLNL +P F+ N++PL + K L+NSFGFG
Sbjct: 389 AAGAVEATFTALACYHQKLPPTLNLDCTEPEFDLNYVPLESQEWKAEGRCIGLTNSFGFG 448
Query: 462 GTNASL 467
GTNA+L
Sbjct: 449 GTNATL 454
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| P63455 | FAB1_MYCBO | 2, ., 3, ., 1, ., 4, 1 | 0.3542 | 0.8160 | 0.9278 | yes | no |
| Q83E37 | FABF_COXBU | 2, ., 3, ., 1, ., 1, 7, 9 | 0.4470 | 0.8646 | 0.9879 | yes | no |
| P0AAI8 | FABF_SHIFL | 2, ., 3, ., 1, ., 1, 7, 9 | 0.4457 | 0.8646 | 0.9903 | yes | no |
| Q9NWU1 | OXSM_HUMAN | 2, ., 3, ., 1, ., 4, 1 | 0.5 | 0.8985 | 0.9259 | yes | no |
| Q8NXE1 | FABF_STAAW | 2, ., 3, ., 1, ., 1, 7, 9 | 0.4328 | 0.8731 | 0.9975 | yes | no |
| P0AAI6 | FABF_ECOL6 | 2, ., 3, ., 1, ., 1, 7, 9 | 0.4457 | 0.8646 | 0.9903 | yes | no |
| P57193 | FABB_BUCAI | 2, ., 3, ., 1, ., 4, 1 | 0.3333 | 0.8350 | 0.9729 | yes | no |
| O94297 | OXSM_SCHPO | 2, ., 3, ., 1, ., 4, 1 | 0.4851 | 0.8837 | 0.9812 | yes | no |
| O34340 | FABF_BACSU | 2, ., 3, ., 1, ., 1, 7, 9 | 0.4620 | 0.8646 | 0.9903 | yes | no |
| Q8L3X9 | KASM_ARATH | 2, ., 3, ., 1, ., 4, 1 | 0.7462 | 0.9682 | 0.9934 | yes | no |
| Q9KQH9 | FABF_VIBCH | 2, ., 3, ., 1, ., 1, 7, 9 | 0.4526 | 0.8668 | 0.9903 | yes | no |
| Q5TKS0 | FABF_STAAU | 2, ., 3, ., 1, ., 1, 7, 9 | 0.4345 | 0.8498 | 0.9975 | yes | no |
| Q9CBS7 | FAB1_MYCLE | 2, ., 3, ., 1, ., 4, 1 | 0.3597 | 0.8118 | 0.9230 | yes | no |
| Q99VA6 | FABF_STAAM | 2, ., 3, ., 1, ., 1, 7, 9 | 0.4328 | 0.8731 | 0.9975 | yes | no |
| Q5HHA1 | FABF_STAAC | 2, ., 3, ., 1, ., 1, 7, 9 | 0.4328 | 0.8731 | 0.9975 | yes | no |
| P55338 | FABF_VIBHA | 2, ., 3, ., 1, ., 1, 7, 9 | 0.4528 | 0.8646 | 0.9855 | yes | no |
| P39525 | CEM1_YEAST | 2, ., 3, ., 1, ., 4, 1 | 0.4342 | 0.8731 | 0.9343 | yes | no |
| Q0VCA7 | OXSM_BOVIN | 2, ., 3, ., 1, ., 4, 1 | 0.4965 | 0.8689 | 0.8934 | yes | no |
| Q7A6F8 | FABF_STAAN | 2, ., 3, ., 1, ., 1, 7, 9 | 0.4328 | 0.8731 | 0.9975 | yes | no |
| P63454 | FAB1_MYCTU | 2, ., 3, ., 1, ., 4, 1 | 0.3542 | 0.8160 | 0.9278 | yes | no |
| Q6GIA3 | FABF_STAAR | 2, ., 3, ., 1, ., 1, 7, 9 | 0.4354 | 0.8625 | 0.9855 | yes | no |
| P56902 | FABF_RHIME | 2, ., 3, ., 1, ., 1, 7, 9 | 0.5287 | 0.8794 | 0.9881 | yes | no |
| Q9D404 | OXSM_MOUSE | 2, ., 3, ., 1, ., 4, 1 | 0.5011 | 0.8689 | 0.8954 | yes | no |
| Q6GAU2 | FABF_STAAS | 2, ., 3, ., 1, ., 1, 7, 9 | 0.4328 | 0.8731 | 0.9975 | yes | no |
| Q89AY4 | FABB_BUCBP | 2, ., 3, ., 1, ., 4, 1 | 0.3522 | 0.8435 | 0.9803 | yes | no |
| P43710 | FABB_HAEIN | 2, ., 3, ., 1, ., 4, 1 | 0.3632 | 0.8498 | 0.9901 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 2.3.1 | 0.983 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 473 | |||
| PLN02836 | 437 | PLN02836, PLN02836, 3-oxoacyl-[acyl-carrier-protei | 0.0 | |
| PRK07314 | 411 | PRK07314, PRK07314, 3-oxoacyl-(acyl carrier protei | 0.0 | |
| TIGR03150 | 407 | TIGR03150, fabF, beta-ketoacyl-acyl-carrier-protei | 0.0 | |
| cd00834 | 406 | cd00834, KAS_I_II, Beta-ketoacyl-acyl carrier prot | 0.0 | |
| PRK06333 | 424 | PRK06333, PRK06333, 3-oxoacyl-(acyl carrier protei | 0.0 | |
| PTZ00050 | 421 | PTZ00050, PTZ00050, 3-oxoacyl-acyl carrier protein | 0.0 | |
| COG0304 | 412 | COG0304, FabB, 3-oxoacyl-(acyl-carrier-protein) sy | 1e-167 | |
| PRK08439 | 406 | PRK08439, PRK08439, 3-oxoacyl-(acyl carrier protei | 1e-131 | |
| PRK08722 | 414 | PRK08722, PRK08722, 3-oxoacyl-(acyl carrier protei | 1e-123 | |
| PLN02787 | 540 | PLN02787, PLN02787, 3-oxoacyl-[acyl-carrier-protei | 1e-106 | |
| PRK14691 | 342 | PRK14691, PRK14691, 3-oxoacyl-(acyl carrier protei | 1e-100 | |
| PRK07967 | 406 | PRK07967, PRK07967, 3-oxoacyl-(acyl carrier protei | 3e-97 | |
| PRK07910 | 418 | PRK07910, PRK07910, 3-oxoacyl-(acyl carrier protei | 3e-93 | |
| PRK09116 | 405 | PRK09116, PRK09116, 3-oxoacyl-(acyl carrier protei | 2e-84 | |
| PRK06501 | 425 | PRK06501, PRK06501, 3-oxoacyl-(acyl carrier protei | 6e-82 | |
| cd00828 | 407 | cd00828, elong_cond_enzymes, "elongating" condensi | 4e-74 | |
| PRK05952 | 381 | PRK05952, PRK05952, 3-oxoacyl-(acyl carrier protei | 6e-72 | |
| cd00833 | 421 | cd00833, PKS, polyketide synthases (PKSs) polymeri | 5e-68 | |
| PRK09185 | 392 | PRK09185, PRK09185, 3-oxoacyl-(acyl carrier protei | 2e-67 | |
| PRK07103 | 410 | PRK07103, PRK07103, polyketide beta-ketoacyl:acyl | 7e-61 | |
| cd00825 | 332 | cd00825, decarbox_cond_enzymes, decarboxylating co | 3e-54 | |
| pfam00109 | 243 | pfam00109, ketoacyl-synt, Beta-ketoacyl synthase, | 3e-54 | |
| cd00832 | 399 | cd00832, CLF, Chain-length factor (CLF) is a facto | 7e-47 | |
| COG3321 | 1061 | COG3321, COG3321, Polyketide synthase modules and | 4e-44 | |
| pfam02801 | 119 | pfam02801, Ketoacyl-synt_C, Beta-ketoacyl synthase | 3e-43 | |
| TIGR02813 | 2582 | TIGR02813, omega_3_PfaA, polyketide-type polyunsat | 2e-39 | |
| cd00327 | 254 | cd00327, cond_enzymes, Condensing enzymes; Family | 6e-32 | |
| smart00825 | 298 | smart00825, PKS_KS, Beta-ketoacyl synthase | 2e-23 | |
| PRK06147 | 348 | PRK06147, PRK06147, 3-oxoacyl-(acyl carrier protei | 2e-07 | |
| cd00751 | 386 | cd00751, thiolase, Thiolase are ubiquitous enzymes | 5e-06 | |
| PRK06519 | 398 | PRK06519, PRK06519, 3-oxoacyl-(acyl carrier protei | 3e-05 | |
| PRK09051 | 394 | PRK09051, PRK09051, beta-ketothiolase; Provisional | 1e-04 | |
| PRK05790 | 393 | PRK05790, PRK05790, putative acyltransferase; Prov | 2e-04 | |
| cd00751 | 386 | cd00751, thiolase, Thiolase are ubiquitous enzymes | 3e-04 | |
| PRK06445 | 394 | PRK06445, PRK06445, acetyl-CoA acetyltransferase; | 4e-04 | |
| PRK05952 | 381 | PRK05952, PRK05952, 3-oxoacyl-(acyl carrier protei | 5e-04 | |
| PRK09052 | 399 | PRK09052, PRK09052, acetyl-CoA acetyltransferase; | 5e-04 | |
| PLN02644 | 394 | PLN02644, PLN02644, acetyl-CoA C-acetyltransferase | 6e-04 | |
| TIGR01930 | 386 | TIGR01930, AcCoA-C-Actrans, acetyl-CoA acetyltrans | 7e-04 | |
| pfam00108 | 262 | pfam00108, Thiolase_N, Thiolase, N-terminal domain | 9e-04 | |
| TIGR01930 | 386 | TIGR01930, AcCoA-C-Actrans, acetyl-CoA acetyltrans | 0.003 | |
| COG0183 | 392 | COG0183, PaaJ, Acetyl-CoA acetyltransferase [Lipid | 0.003 | |
| PRK05790 | 393 | PRK05790, PRK05790, putative acyltransferase; Prov | 0.004 |
| >gnl|CDD|215449 PLN02836, PLN02836, 3-oxoacyl-[acyl-carrier-protein] synthase | Back alignment and domain information |
|---|
Score = 812 bits (2098), Expect = 0.0
Identities = 347/437 (79%), Positives = 388/437 (88%), Gaps = 3/437 (0%)
Query: 34 PLSPLRRVVVTGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFG 93
P P RRVVVTG+G+VTPLGCG ETTWRRLI GECG+R +T +DLKM + D ETQL+
Sbjct: 1 PPLPTRRVVVTGLGLVTPLGCGVETTWRRLIAGECGVRALTQDDLKMKSEDEETQLYTLD 60
Query: 94 QLTSKVAAVVPCGISSGEFNEDSWLNSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQ 153
QL S+VAA+VP G G+F+E+ WLN RS +RFI YALCAADEAL DA+WLPS+
Sbjct: 61 QLPSRVAALVPRGTGPGDFDEELWLN---SRSSSRFIGYALCAADEALSDARWLPSEDEA 117
Query: 154 KERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYGFQGPN 213
KERTGVSIGGGIGSI+D ++AAQ+ICEKRLRRLSPFF+PRILINMA+GHVS++YGFQGPN
Sbjct: 118 KERTGVSIGGGIGSITDILEAAQLICEKRLRRLSPFFVPRILINMAAGHVSIRYGFQGPN 177
Query: 214 HAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTP 273
HAAVTACATGAHSIGDA RMIQFGD+DVMVAGGTESSIDALS+AGF +SRAL+TK+N P
Sbjct: 178 HAAVTACATGAHSIGDAFRMIQFGDADVMVAGGTESSIDALSIAGFSRSRALSTKFNSCP 237
Query: 274 QEASRPFDCGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHID 333
EASRPFDC RDGFVIGEG+GVLVLEELEHAK+RGAKIYAEVRGYGMSGDAHHITQPH D
Sbjct: 238 TEASRPFDCDRDGFVIGEGAGVLVLEELEHAKRRGAKIYAEVRGYGMSGDAHHITQPHED 297
Query: 334 GKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSS 393
G+GA+LAMTRAL+QSGL +QVDYVNAHATSTPLGD VEA AI+TVFS+HATSG LAFSS
Sbjct: 298 GRGAVLAMTRALQQSGLHPNQVDYVNAHATSTPLGDAVEARAIKTVFSEHATSGGLAFSS 357
Query: 394 TKGAIGHLLGAAGAVEAIFAVLAIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPISAA 453
TKGA GHLLGAAGAVEAIF+VLAIHHG+AP TLNL +PDPIF+D F+PLTASK M I AA
Sbjct: 358 TKGATGHLLGAAGAVEAIFSVLAIHHGIAPPTLNLERPDPIFDDGFVPLTASKAMLIRAA 417
Query: 454 LSNSFGFGGTNASLLFT 470
LSNSFGFGGTNASLLFT
Sbjct: 418 LSNSFGFGGTNASLLFT 434
|
Length = 437 |
| >gnl|CDD|235987 PRK07314, PRK07314, 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed | Back alignment and domain information |
|---|
Score = 594 bits (1535), Expect = 0.0
Identities = 230/434 (52%), Positives = 297/434 (68%), Gaps = 25/434 (5%)
Query: 38 LRRVVVTGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTS 97
RRVVVTG+G V+PLG E+TW+ L+ G+ GI IT +FD L
Sbjct: 1 KRRVVVTGLGAVSPLGNDVESTWKNLLAGKSGIGPIT-------HFDTS-------DLAV 46
Query: 98 KVAAVVPCGISSGEFNEDSWLNSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERT 157
K+A V +FN D +++ K+ R + RFI Y + AA +A+ DA +++ +R
Sbjct: 47 KIAGEVK------DFNPDDYMSRKEARRMDRFIQYGIAAAKQAVEDAGLEITEE-NADRI 99
Query: 158 GVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYGFQGPNHAAV 217
GV IG GIG + + + EK RR+SPFF+P +INMA+GHVS++YG +GPNH+ V
Sbjct: 100 GVIIGSGIGGLETIEEQHITLLEKGPRRVSPFFVPMAIINMAAGHVSIRYGAKGPNHSIV 159
Query: 218 TACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEAS 277
TACATGAH+IGDAAR+I +GD+DVMVAGG E++I L +AGF +RAL+T+ N P+ AS
Sbjct: 160 TACATGAHAIGDAARLIAYGDADVMVAGGAEAAITPLGIAGFAAARALSTR-NDDPERAS 218
Query: 278 RPFDCGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGA 337
RPFD RDGFV+GEG+G+LVLEELEHAK RGAKIYAEV GYGM+GDA+H+T P DG+GA
Sbjct: 219 RPFDKDRDGFVMGEGAGILVLEELEHAKARGAKIYAEVVGYGMTGDAYHMTAPAPDGEGA 278
Query: 338 ILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKGA 397
AM ALK +G+ +DY+NAH TSTP GD E AI+ VF +HA +A SSTK
Sbjct: 279 ARAMKLALKDAGINPEDIDYINAHGTSTPAGDKAETQAIKRVFGEHAY--KVAVSSTKSM 336
Query: 398 IGHLLGAAGAVEAIFAVLAIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPISAALSNS 457
GHLLGAAGAVEAIF+VLAI V P T+NL PD + +++P A ++ I ALSNS
Sbjct: 337 TGHLLGAAGAVEAIFSVLAIRDQVIPPTINLDNPDEECDLDYVPNEA-RERKIDYALSNS 395
Query: 458 FGFGGTNASLLFTK 471
FGFGGTNASL+F +
Sbjct: 396 FGFGGTNASLVFKR 409
|
Length = 411 |
| >gnl|CDD|200247 TIGR03150, fabF, beta-ketoacyl-acyl-carrier-protein synthase II | Back alignment and domain information |
|---|
Score = 593 bits (1532), Expect = 0.0
Identities = 232/431 (53%), Positives = 291/431 (67%), Gaps = 25/431 (5%)
Query: 39 RRVVVTGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSK 98
RRVVVTG+G VTPLG G E W L+ G+ GI IT FD L K
Sbjct: 1 RRVVVTGLGAVTPLGNGVEEFWENLLAGKSGIGPIT-------RFDAS-------DLPVK 46
Query: 99 VAAVVPCGISSGEFNEDSWLNSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERTG 158
+A V +F+ + +++ K+ R + RFI YAL AA EA+ D+ ++ ER G
Sbjct: 47 IAGEVK------DFDPEDYIDKKEARRMDRFIQYALAAAKEAVEDSGLDIEEE-DAERVG 99
Query: 159 VSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYGFQGPNHAAVT 218
V IG GIG + + ++ EK RR+SPFFIP +INMA+G +S++YG +GPNHA VT
Sbjct: 100 VIIGSGIGGLETIEEQHIVLLEKGPRRVSPFFIPMSIINMAAGQISIRYGAKGPNHAVVT 159
Query: 219 ACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASR 278
ACATG H+IGDA R+IQ GD+DVM+AGG E++I L +AGF +AL+T N P++ASR
Sbjct: 160 ACATGTHAIGDAFRLIQRGDADVMIAGGAEAAITPLGIAGFAAMKALST-RNDDPEKASR 218
Query: 279 PFDCGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAI 338
PFD RDGFV+GEG+GVLVLEELEHAK RGAKIYAE+ GYGMSGDA+HIT P +G+GA
Sbjct: 219 PFDKDRDGFVMGEGAGVLVLEELEHAKARGAKIYAEIVGYGMSGDAYHITAPAPEGEGAA 278
Query: 339 LAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKGAI 398
AM ALK +G+ VDY+NAH TSTPLGD E AI+ VF DHA LA SSTK
Sbjct: 279 RAMRAALKDAGINPEDVDYINAHGTSTPLGDKAETKAIKRVFGDHAY--KLAVSSTKSMT 336
Query: 399 GHLLGAAGAVEAIFAVLAIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPISAALSNSF 458
GHLLGAAGA+EAIF VLA+ G+ P T+NL PDP + +++P A ++ I ALSNSF
Sbjct: 337 GHLLGAAGAIEAIFTVLALRDGIVPPTINLDNPDPECDLDYVPNEA-REAKIDYALSNSF 395
Query: 459 GFGGTNASLLF 469
GFGG NASL+F
Sbjct: 396 GFGGHNASLVF 406
|
3-oxoacyl-[acyl-carrier-protein] synthase 2 (KAS-II, FabF) is involved in the condensation step of fatty acid biosynthesis in which the malonyl donor group is decarboxylated and the resulting carbanion used to attack and extend the acyl group attached to the acyl carrier protein. Most genomes encoding fatty acid biosynthesis contain a number of condensing enzymes, often of all three types: 1, 2 and 3. Synthase 2 is mechanistically related to synthase 1 (KAS-I, FabB) containing a number of absolutely conserved catalytic residues in common. This model is based primarily on genes which are found in apparent operons with other essential genes of fatty acid biosynthesis (GenProp0681). The large gap between the trusted cutoff and the noise cutoff contains many genes which are not found adjacent to genes of the fatty acid pathway in genomes that often also contain a better hit to this model. These genes may be involved in other processes such as polyketide biosyntheses. Some genomes contain more than one above-trusted hit to this model which may result from recent paralogous expansions. Second hits to this model which are not next to other fatty acid biosynthesis genes may be involved in other processes. FabB sequences should fall well below the noise cutoff of this model [Fatty acid and phospholipid metabolism, Biosynthesis]. Length = 407 |
| >gnl|CDD|238430 cd00834, KAS_I_II, Beta-ketoacyl-acyl carrier protein (ACP) synthase (KAS), type I and II | Back alignment and domain information |
|---|
Score = 557 bits (1439), Expect = 0.0
Identities = 221/431 (51%), Positives = 287/431 (66%), Gaps = 25/431 (5%)
Query: 39 RRVVVTGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSK 98
RRVV+TG+G VTPLG G E W L+ G GIR IT D S+
Sbjct: 1 RRVVITGLGAVTPLGNGVEEFWEALLAGRSGIRPITRFD--------------ASGFPSR 46
Query: 99 VAAVVPCGISSGEFNEDSWLNSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERTG 158
+A VP +F+ + +L+ K+ R + RF +AL AA+EAL DA P + ER G
Sbjct: 47 IAGEVP------DFDPEDYLDRKELRRMDRFAQFALAAAEEALADAGLDPEELD-PERIG 99
Query: 159 VSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYGFQGPNHAAVT 218
V IG GIG ++ +A + + EK RR+SPFF+P L NMA+G V+++ G +GPN+ T
Sbjct: 100 VVIGSGIGGLATIEEAYRALLEKGPRRVSPFFVPMALPNMAAGQVAIRLGLRGPNYTVST 159
Query: 219 ACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASR 278
ACA+GAH+IGDAAR+I+ G +DV++AGG E+ I L++AGF RAL+T+ + P++ASR
Sbjct: 160 ACASGAHAIGDAARLIRLGRADVVIAGGAEALITPLTLAGFAALRALSTRND-DPEKASR 218
Query: 279 PFDCGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAI 338
PFD RDGFV+GEG+GVLVLE LEHAK RGAKIYAE+ GYG S DA+HIT P DG+GA
Sbjct: 219 PFDKDRDGFVLGEGAGVLVLESLEHAKARGAKIYAEILGYGASSDAYHITAPDPDGEGAA 278
Query: 339 LAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKGAI 398
AM AL +GL +DY+NAH TSTPL D E+ AI+ VF +HA + SSTK
Sbjct: 279 RAMRAALADAGLSPEDIDYINAHGTSTPLNDAAESKAIKRVFGEHAK--KVPVSSTKSMT 336
Query: 399 GHLLGAAGAVEAIFAVLAIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPISAALSNSF 458
GHLLGAAGAVEAI +LA+ GV P T+NL +PDP + +++P A ++ PI ALSNSF
Sbjct: 337 GHLLGAAGAVEAIATLLALRDGVLPPTINLEEPDPECDLDYVPNEA-REAPIRYALSNSF 395
Query: 459 GFGGTNASLLF 469
GFGG NASL+F
Sbjct: 396 GFGGHNASLVF 406
|
KASs are responsible for the elongation steps in fatty acid biosynthesis. KASIII catalyses the initial condensation and KAS I and II catalyze further elongation steps by Claisen condensation of malonyl-acyl carrier protein (ACP) with acyl-ACP. Length = 406 |
| >gnl|CDD|235781 PRK06333, PRK06333, 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed | Back alignment and domain information |
|---|
Score = 518 bits (1336), Expect = 0.0
Identities = 217/436 (49%), Positives = 284/436 (65%), Gaps = 21/436 (4%)
Query: 39 RRVVVTGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSK 98
+R+VVTG+G V+PLGCG ET W+RL+ G+ GIR +T + G L +K
Sbjct: 4 KRIVVTGMGAVSPLGCGVETFWQRLLAGQSGIRTLTDFPV--------------GDLATK 49
Query: 99 VAAVVPCGISSGE--FNEDSWLNSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKER 156
+ VP E F+ D +L+ KD R + RFI +A+ AA EAL A W P +ER
Sbjct: 50 IGGQVPDLAEDAEAGFDPDRYLDPKDQRKMDRFILFAMAAAKEALAQAGWDPDTLEDRER 109
Query: 157 TGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYGFQGPNHAA 216
T IG G+G +A + + + RRLSPF IP L NMA+GHVS++YGF+GP A
Sbjct: 110 TATIIGSGVGGFPAIAEAVRTLDSRGPRRLSPFTIPSFLTNMAAGHVSIRYGFKGPLGAP 169
Query: 217 VTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEA 276
VTACA G +IGDAAR+I+ G++DV V GGTE++ID +S+AGF +RAL+T++N P++A
Sbjct: 170 VTACAAGVQAIGDAARLIRSGEADVAVCGGTEAAIDRVSLAGFAAARALSTRFNDAPEQA 229
Query: 277 SRPFDCGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKG 336
SRPFD RDGFV+GEG+G+LV+E LEHA RGA AE+ GYG S DA+H+T DG+G
Sbjct: 230 SRPFDRDRDGFVMGEGAGILVIETLEHALARGAPPLAELVGYGTSADAYHMTAGPEDGEG 289
Query: 337 AILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKG 396
A AM AL+Q+G+ +V ++NAHATSTP+GD E AI+ VF LA SSTK
Sbjct: 290 ARRAMLIALRQAGIPPEEVQHLNAHATSTPVGDLGEVAAIKKVF---GHVSGLAVSSTKS 346
Query: 397 AIGHLLGAAGAVEAIFAVLAIHHGVAPLTLNLAKPDPIFND-NFMPLTASKDMPISAALS 455
A GHLLGAAG VEAIF +LA+ +AP TLNL PDP + + A + M + ALS
Sbjct: 347 ATGHLLGAAGGVEAIFTILALRDQIAPPTLNLENPDPAAEGLDVVANKA-RPMDMDYALS 405
Query: 456 NSFGFGGTNASLLFTK 471
N FGFGG NAS+LF +
Sbjct: 406 NGFGFGGVNASILFRR 421
|
Length = 424 |
| >gnl|CDD|240245 PTZ00050, PTZ00050, 3-oxoacyl-acyl carrier protein synthase; Provisional | Back alignment and domain information |
|---|
Score = 515 bits (1328), Expect = 0.0
Identities = 214/429 (49%), Positives = 281/429 (65%), Gaps = 14/429 (3%)
Query: 48 MVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSKVAAVVPCGI 107
+VTPLG GAE+TW LI G+ GIR++T + + E + + A +PC I
Sbjct: 1 VVTPLGVGAESTWEALIAGKSGIRKLTEFPKFLPDCIPEQKAL------ENLVAAMPCQI 54
Query: 108 SSGEFNEDSWLNSKDHRSIA---RFIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGG 164
++ + + D R +A+ AA EAL DAK + +ER GV+IG G
Sbjct: 55 AAEVDQSE--FDPSDFAPTKRESRATHFAMAAAREALADAKLDILSEKDQERIGVNIGSG 112
Query: 165 IGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYGFQGPNHAAVTACATGA 224
IGS++D D + + EK R+SP+FIP+IL NMA+G V++K+ +GP+ +AVTACATGA
Sbjct: 113 IGSLADLTDEMKTLYEKGHSRVSPYFIPKILGNMAAGLVAIKHKLKGPSGSAVTACATGA 172
Query: 225 HSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGR 284
H IG+A R I++G++D+M+ GGTE+SI +S AGF + RAL TKYN PQ ASRPFD R
Sbjct: 173 HCIGEAFRWIKYGEADIMICGGTEASITPVSFAGFSRMRALCTKYNDDPQRASRPFDKDR 232
Query: 285 DGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRA 344
GFV+GEG+G+LVLEELEHA +RGAKIYAE+RGYG S DAHHIT PH DG+GA M A
Sbjct: 233 AGFVMGEGAGILVLEELEHALRRGAKIYAEIRGYGSSSDAHHITAPHPDGRGARRCMENA 292
Query: 345 LKQSG-LQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKGAIGHLLG 403
LK + + VDYVNAHATSTP+GD +E AI+ VF D L SSTKG +GHLLG
Sbjct: 293 LKDGANININDVDYVNAHATSTPIGDKIELKAIKKVFGDSGAP-KLYVSSTKGGLGHLLG 351
Query: 404 AAGAVEAIFAVLAIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDM-PISAALSNSFGFGG 462
AAGAVE+I +L+++ + P T+NL PD + N + + + I A LS SFGFGG
Sbjct: 352 AAGAVESIVTILSLYEQIIPPTINLENPDAECDLNLVQGKTAHPLQSIDAVLSTSFGFGG 411
Query: 463 TNASLLFTK 471
N +LLFTK
Sbjct: 412 VNTALLFTK 420
|
Length = 421 |
| >gnl|CDD|223381 COG0304, FabB, 3-oxoacyl-(acyl-carrier-protein) synthase [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 475 bits (1226), Expect = e-167
Identities = 211/436 (48%), Positives = 278/436 (63%), Gaps = 31/436 (7%)
Query: 39 RRVVVTGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSK 98
RRVV+TG+G+V+ LG G E W L+ G+ GIR IT FD L K
Sbjct: 3 RRVVITGLGIVSSLGNGVEEVWAALLAGKSGIRPIT-------RFDASG-------LGVK 48
Query: 99 VAAVVPCGISSGEFNEDSWLNSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERTG 158
+A + + D + K+ R + RF A+ AA EAL DA + R G
Sbjct: 49 IAGEIK--------DLDDQIAKKERRFMDRFSQLAVVAAVEALEDAGLDN-ELNVDMRVG 99
Query: 159 VSIGGGIGSISDTVDAA-QMICEKRLRRLSPFFIPRILINMASGHVSMKYGFQGPNHAAV 217
V+IG GIG + D ++ E +R+SPF +P++L N+A+G+V++ +G +GPN+ V
Sbjct: 100 VAIGSGIGGLEDIEFDLDALLLEGLRKRISPFLVPKMLPNLAAGNVAIVFGLKGPNYTPV 159
Query: 218 TACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEAS 277
TACATGAH+IGDA R+I+ G +DV++AGG E++I L +AGF RAL+T+ N P++AS
Sbjct: 160 TACATGAHAIGDAVRLIRLGKADVVIAGGAEAAITPLGIAGFEAMRALSTR-NDDPEKAS 218
Query: 278 RPFDCGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGA 337
RPFD RDGFVIGEG+G LVLEELEHA RGAKIYAE+ GYG + DA+HIT P DG+GA
Sbjct: 219 RPFDKNRDGFVIGEGAGALVLEELEHALARGAKIYAEIVGYGTTSDAYHITAPAPDGEGA 278
Query: 338 ILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKGA 397
I AM AL +GL +DY+NAH TSTP D E+ AI+ VF +HA SL SSTK
Sbjct: 279 IRAMRAALADAGLTPEDIDYINAHGTSTPANDKAESLAIKRVFGEHA--KSLPVSSTKSL 336
Query: 398 IGHLLGAAGAVEAIFAVLAIHHGVAPLTLNLAKPDPIFNDNFMPLTASK--DMPISAALS 455
GH LGAAGAVEAI ++LA+ G+ P T+NL PDP D + + ++ + AALS
Sbjct: 337 TGHTLGAAGAVEAIISLLALRDGIIPPTINLDNPDPEAAD--LDVVPNEARTGAVRAALS 394
Query: 456 NSFGFGGTNASLLFTK 471
NSFGFGGTNASL+F +
Sbjct: 395 NSFGFGGTNASLVFKR 410
|
Length = 412 |
| >gnl|CDD|236265 PRK08439, PRK08439, 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed | Back alignment and domain information |
|---|
Score = 385 bits (990), Expect = e-131
Identities = 186/435 (42%), Positives = 271/435 (62%), Gaps = 31/435 (7%)
Query: 38 LRRVVVTGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTS 97
++RVVVTGIGM+ LG E++++ + GECGI++IT FD
Sbjct: 1 MKRVVVTGIGMINSLGLNKESSFKAICNGECGIKKIT-------LFDAS-------DFPV 46
Query: 98 KVAAVVPCGISSGEFNEDSWLNSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERT 157
++A + +F+ ++ K+ + RFI L AA EA+ DA +LP + ER
Sbjct: 47 QIAGEIT------DFDPTEVMDPKEVKKADRFIQLGLKAAREAMKDAGFLPEEL-DAERF 99
Query: 158 GVSIGGGIGSISDTVDAAQMICEKR-LRRLSPFFIPRILINMASGHVSMKYGFQGPNHAA 216
GVS GIG + ++ +IC ++ R++SPFFIP L+NM G +S+++G +GPN ++
Sbjct: 100 GVSSASGIGGLP-NIEKNSIICFEKGPRKISPFFIPSALVNMLGGFISIEHGLKGPNLSS 158
Query: 217 VTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEA 276
VTACA G H+I +A + I G +D M+ G ES+I + + GF +AL+T+ N P++A
Sbjct: 159 VTACAAGTHAIIEAVKTIMLGGADKMLVVGAESAICPVGIGGFAAMKALSTR-NDDPKKA 217
Query: 277 SRPFDCGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKG 336
SRPFD RDGFV+GEG+G LVLEE E AKKRGAKIYAE+ G+G SGDA+HIT P + G
Sbjct: 218 SRPFDKDRDGFVMGEGAGALVLEEYESAKKRGAKIYAEIIGFGESGDANHITSPAPE--G 275
Query: 337 AILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKG 396
+ AM AL+ +G + ++DY+NAH TSTP D E A++ +F + SSTKG
Sbjct: 276 PLRAMKAALEMAG--NPKIDYINAHGTSTPYNDKNETAALKELFGSKEKVPPV--SSTKG 331
Query: 397 AIGHLLGAAGAVEAIFAVLAIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPISAALSN 456
IGH LGAAGA+EA+ +++A+ G+ P T+N PDP + +++P A K ++ +SN
Sbjct: 332 QIGHCLGAAGAIEAVISIMAMRDGILPPTINQETPDPECDLDYIPNVARK-AELNVVMSN 390
Query: 457 SFGFGGTNASLLFTK 471
SFGFGGTN ++F K
Sbjct: 391 SFGFGGTNGVVIFKK 405
|
Length = 406 |
| >gnl|CDD|181539 PRK08722, PRK08722, 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed | Back alignment and domain information |
|---|
Score = 365 bits (939), Expect = e-123
Identities = 197/433 (45%), Positives = 273/433 (63%), Gaps = 23/433 (5%)
Query: 39 RRVVVTGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSK 98
RRVVVTG+GM++P+G E++W+ L+ G+ GI I E NF +++
Sbjct: 4 RRVVVTGMGMLSPVGNTVESSWKALLAGQSGIVNI--EHFDTTNF------------STR 49
Query: 99 VAAVVPCGISSGEFNEDSWLNSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERTG 158
A +V +FN + +++ KD R + FI Y + A +AL D+ L + R G
Sbjct: 50 FAGLVK------DFNCEEYMSKKDARKMDLFIQYGIAAGIQALDDSG-LEVTEENAHRIG 102
Query: 159 VSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYGFQGPNHAAVT 218
V+IG GIG + Q + EK R++SPFF+P ++NM +G++S+ G +GPN A T
Sbjct: 103 VAIGSGIGGLGLIEAGHQALVEKGPRKVSPFFVPSTIVNMIAGNLSIMRGLRGPNIAIST 162
Query: 219 ACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASR 278
AC TG H+IG AARMI +GD+D MVAGG E + L MAGF ++AL+T+ N PQ+ASR
Sbjct: 163 ACTTGLHNIGHAARMIAYGDADAMVAGGAEKASTPLGMAGFGAAKALSTR-NDEPQKASR 221
Query: 279 PFDCGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAI 338
P+D RDGFV+G+G+G++VLEE EHAK RGAKIYAE+ G+GMSGDA+H+T P DG G
Sbjct: 222 PWDKDRDGFVLGDGAGMMVLEEYEHAKARGAKIYAELVGFGMSGDAYHMTSPSEDGSGGA 281
Query: 339 LAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKGAI 398
LAM A++ +G+ Q+ YVNAH TSTP GD E I+ + + L SSTK
Sbjct: 282 LAMEAAMRDAGVTGEQIGYVNAHGTSTPAGDVAEIKGIKRALGEAGSKQVLV-SSTKSMT 340
Query: 399 GHLLGAAGAVEAIFAVLAIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPISAALSNSF 458
GHLLGAAG+VEAI V+++ + P T+NL P+ + + +P TA K + A+ NSF
Sbjct: 341 GHLLGAAGSVEAIITVMSLVDQIVPPTINLDDPEEGLDIDLVPHTARKVESMEYAICNSF 400
Query: 459 GFGGTNASLLFTK 471
GFGGTN SL+F K
Sbjct: 401 GFGGTNGSLIFKK 413
|
Length = 414 |
| >gnl|CDD|215421 PLN02787, PLN02787, 3-oxoacyl-[acyl-carrier-protein] synthase II | Back alignment and domain information |
|---|
Score = 326 bits (837), Expect = e-106
Identities = 180/441 (40%), Positives = 253/441 (57%), Gaps = 33/441 (7%)
Query: 34 PLSPLRRVVVTGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFG 93
PL+ RRVVVTG+G+V+PLG + + L+ G GI EI D
Sbjct: 124 PLTKQRRVVVTGMGVVSPLGHDPDVFYNNLLEGVSGISEIERFDCS-------------- 169
Query: 94 QLTSKVAAVVPCGISSGEFNEDSWLNSKDHRSIARFIAYALCAADEALHDAKWLPS--DQ 151
Q +++A + F+ D W+ K + + +F+ Y L A +AL D +
Sbjct: 170 QFPTRIAGEIK------SFSTDGWVAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMKE 223
Query: 152 GQKERTGVSIG---GGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYG 208
K + GV IG GG+ +D ++A ++ R+++PF +P NM S ++M G
Sbjct: 224 LDKTKCGVLIGSAMGGMKVFNDAIEALRI----SYRKMNPFCVPFATTNMGSAMLAMDLG 279
Query: 209 FQGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTK 268
+ GPN++ TACAT I +AA I G++DVM+ GG++++I + + GF RAL+ +
Sbjct: 280 WMGPNYSISTACATSNFCILNAANHIIRGEADVMLCGGSDAAIIPIGLGGFVACRALSQR 339
Query: 269 YNGTPQEASRPFDCGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHIT 328
N P +ASRP+D RDGFV+GEG+GVL+LEELEHAKKRGA IYAE G + DA+H+T
Sbjct: 340 -NDDPTKASRPWDMNRDGFVMGEGAGVLLLEELEHAKKRGANIYAEFLGGSFTCDAYHMT 398
Query: 329 QPHIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGS 388
+PH +G G IL + +AL QSG+ V+Y+NAHATST GD E A+ F +
Sbjct: 399 EPHPEGAGVILCIEKALAQSGVSKEDVNYINAHATSTKAGDLKEYQALMRCFGQNP---E 455
Query: 389 LAFSSTKGAIGHLLGAAGAVEAIFAVLAIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDM 448
L +STK IGHLLGAAGAVEAI V AI G +NL P+ + + + +
Sbjct: 456 LRVNSTKSMIGHLLGAAGAVEAIATVQAIRTGWVHPNINLENPESGVDTKVLVGPKKERL 515
Query: 449 PISAALSNSFGFGGTNASLLF 469
I ALSNSFGFGG N+S+LF
Sbjct: 516 DIKVALSNSFGFGGHNSSILF 536
|
Length = 540 |
| >gnl|CDD|173154 PRK14691, PRK14691, 3-oxoacyl-(acyl carrier protein) synthase II; Provisional | Back alignment and domain information |
|---|
Score = 302 bits (775), Expect = e-100
Identities = 161/319 (50%), Positives = 215/319 (67%), Gaps = 3/319 (0%)
Query: 153 QKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYGFQGP 212
++ERT IG GIG A + + +RLSPF +P L+N+A+GHVS+K+ F+GP
Sbjct: 24 KQERTATIIGAGIGGFPAIAHAVRTSDSRGPKRLSPFTVPSFLVNLAAGHVSIKHHFKGP 83
Query: 213 NHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGT 272
A VTACA G +IGDA RMI+ ++DV + GG E+ ID +S+AGF +RAL+T +N T
Sbjct: 84 IGAPVTACAAGVQAIGDAVRMIRNNEADVALCGGAEAVIDTVSLAGFAAARALSTHFNST 143
Query: 273 PQEASRPFDCGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHI 332
P++ASRPFD RDGFV+GEG+G+L++EELEHA RGAK AE+ GYG S DA+H+T
Sbjct: 144 PEKASRPFDTARDGFVMGEGAGLLIIEELEHALARGAKPLAEIVGYGTSADAYHMTSGAE 203
Query: 333 DGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFS 392
DG GA AM AL+Q+G+ QV ++NAHATSTP+GD E AI+ +F + S +LA +
Sbjct: 204 DGDGAYRAMKIALRQAGITPEQVQHLNAHATSTPVGDLGEINAIKHLFGE---SNALAIT 260
Query: 393 STKGAIGHLLGAAGAVEAIFAVLAIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPISA 452
STK A GHLLGAAG +E IF VLA+ + P TLNL PDP + ++ ++
Sbjct: 261 STKSATGHLLGAAGGLETIFTVLALRDQIVPATLNLENPDPAAKGLNIIAGNAQPHDMTY 320
Query: 453 ALSNSFGFGGTNASLLFTK 471
ALSN FGF G NAS+L +
Sbjct: 321 ALSNGFGFAGVNASILLKR 339
|
Length = 342 |
| >gnl|CDD|181184 PRK07967, PRK07967, 3-oxoacyl-(acyl carrier protein) synthase I; Reviewed | Back alignment and domain information |
|---|
Score = 298 bits (764), Expect = 3e-97
Identities = 164/441 (37%), Positives = 242/441 (54%), Gaps = 45/441 (10%)
Query: 38 LRRVVVTGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTS 97
+RRVV+TG+G+V+ +G + L G GI +PE +MG + +G +
Sbjct: 1 MRRVVITGLGIVSSIGNNQQEVLASLREGRSGIT-FSPEFAEMG-----MRSQVWGNVKL 54
Query: 98 KVAAVVPCGISSGEFNEDSWLNSKDHRSIARFI----AYALCAADEALHDAKWLPSDQGQ 153
++ R + RF+ AYA A ++A+ DA L +Q
Sbjct: 55 DPTGLI-------------------DRKVMRFMGDASAYAYLAMEQAIADAG-LSEEQVS 94
Query: 154 KERTGVSIGGGIGSISDTVDAAQ-MICEKRLRRLSPFFIPRILINMASGHVSMKYGFQGP 212
RTG+ G G GS + V+AA M + +R+ P+ + + + + S ++ + +G
Sbjct: 95 NPRTGLIAGSGGGSTRNQVEAADAMRGPRGPKRVGPYAVTKAMASTVSACLATPFKIKGV 154
Query: 213 NHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGT 272
N++ +ACAT AH IG+A IQ G D++ AGG E +S F AL+TKYN T
Sbjct: 155 NYSISSACATSAHCIGNAVEQIQLGKQDIVFAGGGEELDWEMSCL-FDAMGALSTKYNDT 213
Query: 273 PQEASRPFDCGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHI 332
P++ASR +D RDGFVI G GV+V+EELEHA RGAKIYAE+ GYG + D + + P
Sbjct: 214 PEKASRAYDANRDGFVIAGGGGVVVVEELEHALARGAKIYAEIVGYGATSDGYDMVAP-- 271
Query: 333 DGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFS 392
G+GA+ M AL + + + +DY+N H TSTP+GD E AIR VF D + A S
Sbjct: 272 SGEGAVRCMQMAL--ATVDT-PIDYINTHGTSTPVGDVKELGAIREVFGDKSP----AIS 324
Query: 393 STKGAIGHLLGAAGAVEAIFAVLAIHHGVAPLTLNLAKPDPIFNDNFMPL--TASKDMPI 450
+TK GH LGAAG EAI+++L + HG + N+ + DP MP+ + + +
Sbjct: 325 ATKSLTGHSLGAAGVQEAIYSLLMMEHGFIAPSANIEELDPQAAG--MPIVTETTDNAEL 382
Query: 451 SAALSNSFGFGGTNASLLFTK 471
+ +SNSFGFGGTNA+L+F +
Sbjct: 383 TTVMSNSFGFGGTNATLVFRR 403
|
Length = 406 |
| >gnl|CDD|236129 PRK07910, PRK07910, 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed | Back alignment and domain information |
|---|
Score = 288 bits (738), Expect = 3e-93
Identities = 155/435 (35%), Positives = 220/435 (50%), Gaps = 35/435 (8%)
Query: 41 VVVTGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSKVA 100
VVVTGI M T L AETTW+ L+ G+ GIR + +D + FD ++ G L
Sbjct: 14 VVVTGIAMTTALATDAETTWKLLLDGQSGIRTL--DDPFVEEFDLPVRIG--GHLLE--- 66
Query: 101 AVVPCGISSGEFNEDSWLNSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERTGVS 160
D L + R ++ + +A S + R VS
Sbjct: 67 ------------EFDHQLTRVELRRMSYLQRMSTVLGRRVWENAG---SPEVDTNRLMVS 111
Query: 161 IGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYGFQGPNHAAVTAC 220
IG G+GS + V A + + LR +SP + + N + V ++ + V+AC
Sbjct: 112 IGTGLGSAEELVFAYDDMRARGLRAVSPLAVQMYMPNGPAAAVGLERHAKAGVITPVSAC 171
Query: 221 ATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPF 280
A+G+ +I A R I G++D+ + GG E+ I+A+ +AGF + R + + N P A RPF
Sbjct: 172 ASGSEAIAQAWRQIVLGEADIAICGGVETRIEAVPIAGFAQMRIVMSTNNDDPAGACRPF 231
Query: 281 DCGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILA 340
D RDGFV GEG ++V+E EHAK RGA I A + G ++ D H+ P +G+ A A
Sbjct: 232 DKDRDGFVFGEGGALMVIETEEHAKARGANILARIMGASITSDGFHMVAPDPNGERAGHA 291
Query: 341 MTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKGAIGH 400
MTRA++ +GL +D+VNAHAT T +GD E AI H A + K A+GH
Sbjct: 292 MTRAIELAGLTPGDIDHVNAHATGTSVGDVAEGKAINNALGGHRP----AVYAPKSALGH 347
Query: 401 LLGAAGAVEAIFAVLAIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMP----ISAALSN 456
+GA GAVE+I VLA+ GV P TLNL DP + L P A++N
Sbjct: 348 SVGAVGAVESILTVLALRDGVIPPTLNLENLDPEID-----LDVVAGEPRPGNYRYAINN 402
Query: 457 SFGFGGTNASLLFTK 471
SFGFGG N +L F +
Sbjct: 403 SFGFGGHNVALAFGR 417
|
Length = 418 |
| >gnl|CDD|181657 PRK09116, PRK09116, 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed | Back alignment and domain information |
|---|
Score = 264 bits (678), Expect = 2e-84
Identities = 151/438 (34%), Positives = 214/438 (48%), Gaps = 42/438 (9%)
Query: 39 RRVVVTGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSK 98
RRVVVTG+G VT LG +T RL G +R +M +DR L+ +
Sbjct: 2 RRVVVTGMGGVTALGEDWQTIAARLKAGRNAVR-------RMPEWDRYDGLNT------R 48
Query: 99 VAAVVPCGISSGEFNEDSWLNSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERTG 158
+AA + +F + K RS+ R A A++ AL DA L R G
Sbjct: 49 LAAPID------DFELPAHYTRKKIRSMGRVSLMATRASELALEDAGLLGDPILTDGRMG 102
Query: 159 VSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYGFQGPNHAAVT 218
++ G GS M+ E + ++ R++ + + +V + +G +G +
Sbjct: 103 IAYGSSTGSTDPIGAFGTMLLEGSMSGITATTYVRMMPHTTAVNVGLFFGLKGRVIPTSS 162
Query: 219 ACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRAL-------TTKYNG 271
AC +G+ IG A I++G VM+AGG E C + A T+ N
Sbjct: 163 ACTSGSQGIGYAYEAIKYGYQTVMLAGGAEE---------LCPTEAAVFDTLFATSTRND 213
Query: 272 TPQEASRPFDCGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPH 331
P+ RPFD RDG VIGEG+G LVLEELEHAK RGA IYAE+ G+G + D H+TQP
Sbjct: 214 APELTPRPFDANRDGLVIGEGAGTLVLEELEHAKARGATIYAEIVGFGTNSDGAHVTQPQ 273
Query: 332 IDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAF 391
+ +AM ALK +GL + YVNAH T+T GD E+ A VF +
Sbjct: 274 AETMQ--IAMELALKDAGLAPEDIGYVNAHGTATDRGDIAESQATAAVFGA-----RMPI 326
Query: 392 SSTKGAIGHLLGAAGAVEAIFAVLAIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPIS 451
SS K GH LGA GA+EA ++ ++ G TLNL + DP + ++++
Sbjct: 327 SSLKSYFGHTLGACGALEAWMSIEMMNEGWFAPTLNLTQVDPACGALDYIMGEAREIDTE 386
Query: 452 AALSNSFGFGGTNASLLF 469
+SN+F FGG N SL+F
Sbjct: 387 YVMSNNFAFGGINTSLIF 404
|
Length = 405 |
| >gnl|CDD|235817 PRK06501, PRK06501, 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed | Back alignment and domain information |
|---|
Score = 259 bits (664), Expect = 6e-82
Identities = 156/445 (35%), Positives = 217/445 (48%), Gaps = 51/445 (11%)
Query: 41 VVVTGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSKVA 100
V VTG+G+VT LG G W L GE GI IT F E L +++A
Sbjct: 13 VAVTGMGVVTSLGQGKADNWAALTAGESGIHTIT-------RFPTEG-------LRTRIA 58
Query: 101 AVVPCGISSGEFNEDSWLNSKDHRSIARFIAYALCAADEALHDAKWLPSDQG-------- 152
V +F +S + A A A AA+EAL A D
Sbjct: 59 GTV-------DFLPESPFGA-----SALSEALARLAAEEALAQAGIGKGDFPGPLFLAAP 106
Query: 153 -------QKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSM 205
+ ++G +D +++ R R R + ++
Sbjct: 107 PVELEWPARFALAAAVGD-----NDAPSYDRLLRAARGGRFDALH-ERFQFGSIADRLAD 160
Query: 206 KYGFQGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRAL 265
++G +G + TACA+GA +I I+ G++D + T+ S+ A ++ F AL
Sbjct: 161 RFGTRGLPISLSTACASGATAIQLGVEAIRRGETDRALCIATDGSVSAEALIRFSLLSAL 220
Query: 266 TTKYNGTPQEASRPFDCGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAH 325
+T+ N P++AS+PF RDGFV+ EG+G LVLE LE A RGAKI V G G D+
Sbjct: 221 STQ-NDPPEKASKPFSKDRDGFVMAEGAGALVLESLESAVARGAKILGIVAGCGEKADSF 279
Query: 326 HITQPHIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHAT 385
H T+ DG AI A+ AL +GL Q+DY+NAH TSTP D +E + VF +
Sbjct: 280 HRTRSSPDGSPAIGAIRAALADAGLTPEQIDYINAHGTSTPENDKMEYLGLSAVFGERL- 338
Query: 386 SGSLAFSSTKGAIGHLLGAAGAVEAIFAVLAIHHGVAPLTLNLAKPDPIFNDNFMPLTAS 445
S+ SS K IGH L AAGAVEA+F++L I G P T+N PDP + +P +
Sbjct: 339 -ASIPVSSNKSMIGHTLTAAGAVEAVFSLLTIQTGRLPPTINYDNPDPAIPLDVVP-NVA 396
Query: 446 KDMPISAALSNSFGFGGTNASLLFT 470
+D ++A LSNSFGFGG NASL+ T
Sbjct: 397 RDARVTAVLSNSFGFGGQNASLVLT 421
|
Length = 425 |
| >gnl|CDD|238424 cd00828, elong_cond_enzymes, "elongating" condensing enzymes are a subclass of decarboxylating condensing enzymes, including beta-ketoacyl [ACP] synthase, type I and II and polyketide synthases | Back alignment and domain information |
|---|
Score = 238 bits (610), Expect = 4e-74
Identities = 144/437 (32%), Positives = 206/437 (47%), Gaps = 38/437 (8%)
Query: 39 RRVVVTGIGMVTPLGCGAETT---WRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQL 95
RVV+TGIG+V+P G G + W L G GI + +
Sbjct: 1 SRVVITGIGVVSPHGEGCDEVEEFWEALREGRSGIAPVARLKSRF--------------- 45
Query: 96 TSKVAAVVPCGISSGEFNEDSWLNSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKE 155
VA +P G G +K + R AL A +EAL DA +
Sbjct: 46 DRGVAGQIPTGDIPGWD-------AKRTGIVDRTTLLALVATEEALADAGITDPYEVHPS 98
Query: 156 RTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPR--ILINMASGHVSMKYGF-QGP 212
GV +G G+G + + + R ++P+ P+ + N +G V++ GP
Sbjct: 99 EVGVVVGSGMGGL----RFLRRGGKLDARAVNPYVSPKWMLSPNTVAGWVNILLLSSHGP 154
Query: 213 NHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGT 272
V ACAT ++ A I+ G +D++V GG E ++ ++GF AL+T
Sbjct: 155 IKTPVGACATALEALDLAVEAIRSGKADIVVVGGVEDPLE-EGLSGFANMGALSTAEEE- 212
Query: 273 PQEASRPFDCGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHI 332
P+E SRPFD RDGFV EG+GVLVLE E A RGA IY V G + D + P
Sbjct: 213 PEEMSRPFDETRDGFVEAEGAGVLVLERAELALARGAPIYGRVAGTASTTDGAGRSVP-A 271
Query: 333 DGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFS 392
GKG A+ AL ++GL +D ++AH TSTP D E+ AI V L +
Sbjct: 272 GGKGIARAIRTALAKAGLSLDDLDVISAHGTSTPANDVAESRAIAEVAGALG--APLPVT 329
Query: 393 STKGAIGHLLGAAGAVEAIFAVLAIHHGVAPLTLNLAKPDPIFNDNFMPLTASKD-MPIS 451
+ K GH GAAGA++ I A+ ++ HG+ P T NL DP + + + +
Sbjct: 330 AQKALFGHSKGAAGALQLIGALQSLEHGLIPPTANLDDVDPDVEHLSVVGLSRDLNLKVR 389
Query: 452 AALSNSFGFGGTNASLL 468
AAL N+FGFGG+NA+L+
Sbjct: 390 AALVNAFGFGGSNAALV 406
|
They are characterized by the utlization of acyl carrier protein (ACP) thioesters as primer substrates, as well as the nature of their active site residues. Length = 407 |
| >gnl|CDD|235653 PRK05952, PRK05952, 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed | Back alignment and domain information |
|---|
Score = 232 bits (593), Expect = 6e-72
Identities = 110/274 (40%), Positives = 162/274 (59%), Gaps = 16/274 (5%)
Query: 194 ILINMASGHVSMKYGFQGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDA 253
L + A+ + + G QGP A + ACATG +I +IQ G ++AG E+ I
Sbjct: 120 TLPHQAAIAAARQIGTQGPVLAPMAACATGLWAIAQGVELIQTGQCQRVIAGAVEAPITP 179
Query: 254 LSMAGFCKSRALTTKYNGTPQEASRPFDCGRDGFVIGEGSGVLVLEELEHAKKRGAKIYA 313
L++AGF + AL + + PFD R+G V+GEG +LVLE E A+KRGAKIY
Sbjct: 180 LTLAGFQQMGALA-------KTGAYPFDRQREGLVLGEGGAILVLESAELAQKRGAKIYG 232
Query: 314 EVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEA 373
++ G+G++ DA+H++ P DGK AI A+ + L +SGL +DY++AH T+T L D EA
Sbjct: 233 QILGFGLTCDAYHMSAPEPDGKSAIAAIQQCLARSGLTPEDIDYIHAHGTATRLNDQREA 292
Query: 374 TAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLAIHHGVAPLTLNLAKPDP 433
I+ +F +A SSTKGA GH LGA+GA+ F++LA+ H P + L +P+
Sbjct: 293 NLIQALFPH-----RVAVSSTKGATGHTLGASGALGVAFSLLALRHQQLPPCVGLQEPE- 346
Query: 434 IFNDNFMPLTASKDMPISAALSNSFGFGGTNASL 467
F+ NF + ++ P+ L SFGFGG NA++
Sbjct: 347 -FDLNF--VRQAQQSPLQNVLCLSFGFGGQNAAI 377
|
Length = 381 |
| >gnl|CDD|238429 cd00833, PKS, polyketide synthases (PKSs) polymerize simple fatty acids into a large variety of different products, called polyketides, by successive decarboxylating Claisen condensations | Back alignment and domain information |
|---|
Score = 223 bits (570), Expect = 5e-68
Identities = 121/444 (27%), Positives = 186/444 (41%), Gaps = 40/444 (9%)
Query: 40 RVVVTGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSKV 99
+ + G+ P + W L+ G I EI + + G+ ++
Sbjct: 2 PIAIVGMACRFPGAADPDEFWENLLEGRDAISEIPED--RWDADGYYPDPGKPGKTYTRR 59
Query: 100 AAVVPCGISSGEFNEDSWLNSKDHRSIARFI----AYALCAADEALHDAKWLPSDQGQKE 155
+ + + A + L A EAL DA + P +
Sbjct: 60 GGFLD------DVDAFDAAFFGISPREAEAMDPQQRLLLEVAWEALEDAGYSP-ESLAGS 112
Query: 156 RTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYGFQGPNHA 215
RTGV +G S SD + + + + + +S + +GP+
Sbjct: 113 RTGVFVGA---SSSDY----LELLARDPDEIDAYAATGTSRAFLANRISYFFDLRGPSLT 165
Query: 216 AVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQE 275
TAC++ ++ A + ++ G+ D+ + GG + GF K+ L+ P
Sbjct: 166 VDTACSSSLVALHLACQSLRSGECDLALVGGVNLILSPDMFVGFSKAGMLS------PDG 219
Query: 276 ASRPFDCGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMS--GDAHHITQPHID 333
RPFD DG+V GEG GV+VL+ L A + G +IYA +RG ++ G IT P
Sbjct: 220 RCRPFDADADGYVRGEGVGVVVLKRLSDALRDGDRIYAVIRGSAVNQDGRTKGITAPS-- 277
Query: 334 GKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFS-DHATSGSLAFS 392
G+ + RA ++G+ +DYV AH T TPLGD +E A+ VF + L
Sbjct: 278 GEAQAALIRRAYARAGVDPSDIDYVEAHGTGTPLGDPIEVEALAKVFGGSRSADQPLLIG 337
Query: 393 STKGAIGHLLGAAGAVEAIFAVLAIHHGVAPLTLNLAKPDPIFNDNFMPLTA-------- 444
S K IGHL AAG I VLA+ HGV P L+ P+P + PL
Sbjct: 338 SVKSNIGHLEAAAGLAGLIKVVLALEHGVIPPNLHFETPNPKIDFEESPLRVPTEARPWP 397
Query: 445 SKDMPISAALSNSFGFGGTNASLL 468
+ P A + +SFGFGGTNA ++
Sbjct: 398 APAGPRRAGV-SSFGFGGTNAHVI 420
|
PKSs can be divided into 2 groups, modular type I PKSs consisting of one or more large multifunctional proteins and iterative type II PKSs, complexes of several monofunctional subunits. Length = 421 |
| >gnl|CDD|236398 PRK09185, PRK09185, 3-oxoacyl-(acyl carrier protein) synthase I; Reviewed | Back alignment and domain information |
|---|
Score = 220 bits (564), Expect = 2e-67
Identities = 133/443 (30%), Positives = 196/443 (44%), Gaps = 72/443 (16%)
Query: 41 VVVTGIGMVTPLGCGAETTWRRLIVGEC-GIREITPEDLKMGNFDRETQLHAFGQLTSKV 99
V ++ G + LG G + L G G+R P D D T G++
Sbjct: 4 VYISAFGATSALGRGLDAILAALRAGRASGMR---PCD--FWLVDLPT---WVGEVVGVE 55
Query: 100 AAVVPCGISSGEFNEDSWLNSKDHRSIARFIAYALCAA---DEALHDAKWLPSDQGQKER 156
+P +++ + +++R AL A + A+ A + +R
Sbjct: 56 LPALPAALAA--------FDCRNNR-------LALLALQQIEPAVEAAI----ARYGADR 96
Query: 157 TGVSIGGGIGSISDTVDAAQMICEKRLRRLSP--------FFIPRILINMASGHVSMKYG 208
GV +G I + E RR P + + + + + G
Sbjct: 97 IGVVLGTSTSGILEG--------ELAYRRRDPAHGALPADYHYAQQELGSLADFLRAYLG 148
Query: 209 FQGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTK 268
GP + TAC++ A A R+++ G D + GG +S + L++ GF S +
Sbjct: 149 LSGPAYTISTACSSSAKVFASARRLLEAGLCDAAIVGGVDS-LCRLTLNGF-NSLESLSP 206
Query: 269 YNGTPQEASRPFDCGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVR--GYGMSGDAHH 326
+ RPF RDG IGE + +LE R A V G G S DAHH
Sbjct: 207 ------QPCRPFSANRDGINIGEAAAFFLLE-------REDD--AAVALLGVGESSDAHH 251
Query: 327 ITQPHIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATS 386
++ PH +G GAILAM +AL +GL + Y+N H T+TPL D +E+ A+ VF D
Sbjct: 252 MSAPHPEGLGAILAMQQALADAGLAPADIGYINLHGTATPLNDAMESRAVAAVFGDG--- 308
Query: 387 GSLAFSSTKGAIGHLLGAAGAVEAIFAVLAIHHGVAPLTLNLAKPDPIFNDNFMPLTASK 446
+ SSTKG GH LGAAGAVEA LA+ HG+ P N +PDP ++ + ++
Sbjct: 309 --VPCSSTKGLTGHTLGAAGAVEAAICWLALRHGLPPHGWNTGQPDPALPPLYL-VENAQ 365
Query: 447 DMPISAALSNSFGFGGTNASLLF 469
+ I LSNSF FGG N SL+F
Sbjct: 366 ALAIRYVLSNSFAFGGNNCSLIF 388
|
Length = 392 |
| >gnl|CDD|180839 PRK07103, PRK07103, polyketide beta-ketoacyl:acyl carrier protein synthase; Validated | Back alignment and domain information |
|---|
Score = 204 bits (520), Expect = 7e-61
Identities = 133/439 (30%), Positives = 194/439 (44%), Gaps = 44/439 (10%)
Query: 40 RVVVTGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSKV 99
VVVTG+G+V+ +G G + L+ G M R+ A L S
Sbjct: 3 EVVVTGVGVVSAIGQGRPSFAAALLAGRHAFG-------VMRRPGRQVPDDAGAGLASAF 55
Query: 100 AAVVPCGISSGEFNEDSWLNSKDHRSIARFIAY----ALCAADEALHDAKWLPSDQGQKE 155
E + + D + R + AL AA EA DA P D +
Sbjct: 56 IG--------AELDSLALPERLD-AKLLRRASLSAQAALAAAREAWRDAALGPVD---PD 103
Query: 156 RTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPR-ILINMASGHV---SMKYGFQG 211
R G+ +GG + + R F P L M + V S ++G +G
Sbjct: 104 RIGLVVGGSNLQQREQALVHE-----TYRDRPAFLRPSYGLSFMDTDLVGLCSEQFGIRG 158
Query: 212 PNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRAL-TTKYN 270
A A+G ++ AAR++Q G D +A G + A+ + ++
Sbjct: 159 EGFTVGGASASGQLAVIQAARLVQSGSVDACIAVGALMDLSYWECQALRSLGAMGSDRFA 218
Query: 271 GTPQEASRPFDCGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQP 330
P+ A RPFD RDGF+ GE G +VLE E A++RGA+ YA++ G+ M DA+ P
Sbjct: 219 DEPEAACRPFDQDRDGFIYGEACGAVVLESAESARRRGARPYAKLLGWSMRLDANRGPDP 278
Query: 331 HIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLA 390
++G+ + AL+++GL +DYVN H T +PLGD E A+ HA
Sbjct: 279 SLEGEMR--VIRAALRRAGLGPEDIDYVNPHGTGSPLGDETELAALFASGLAHAW----- 331
Query: 391 FSSTKGAIGHLLGAAGAVEAIFAVLAIHHGVAPLTLNLAKP-DPIFNDNFMPLTASKDMP 449
++TK GH L AAG VE I +L + G + NL +P D F ++ TA
Sbjct: 332 INATKSLTGHGLSAAGIVELIATLLQMRAGFLHPSRNLDEPIDERF--RWVGSTAES-AR 388
Query: 450 ISAALSNSFGFGGTNASLL 468
I ALS SFGFGG N +L+
Sbjct: 389 IRYALSLSFGFGGINTALV 407
|
Length = 410 |
| >gnl|CDD|238421 cd00825, decarbox_cond_enzymes, decarboxylating condensing enzymes; Family of enzymes that catalyze the formation of a new carbon-carbon bond by a decarboxylating Claisen-like condensation reaction | Back alignment and domain information |
|---|
Score = 184 bits (469), Expect = 3e-54
Identities = 114/341 (33%), Positives = 167/341 (48%), Gaps = 19/341 (5%)
Query: 128 RFIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLS 187
AA+ A+ DA L + + GV +G G GS Q+ +R +
Sbjct: 10 YVSILGFEAAERAIADAG-LSREYQKNPIVGVVVGTGGGS-----PRFQVFGADAMRAVG 63
Query: 188 PFFIPRILINMASGHVSMKYGFQGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGT 247
P+ + + + ASG ++ G GP + ACA H++ AA +Q G D+++AGG+
Sbjct: 64 PYVVTKAMFPGASGQIATPLGIHGPAYDVSAACAGSLHALSLAADAVQNGKQDIVLAGGS 123
Query: 248 ESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDGFVIGEGSGVLVLEELEHAKKR 307
E A M + + TP++ASR FD DGFV G+G+G LV+EELEHA R
Sbjct: 124 E--ELAAPMDCEFDAMGALS----TPEKASRTFDAAADGFVFGDGAGALVVEELEHALAR 177
Query: 308 GAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPL 367
GA IYAE+ G + D + +G A AL +GL +DY+ AH T TP+
Sbjct: 178 GAHIYAEIVGTAATIDGAGMGAFAPSAEGLARAAKEALAVAGLTVWDIDYLVAHGTGTPI 237
Query: 368 GDTVEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLAIHHGVAPLTLN 427
GD E +R+ F D S A S+TK G+L AA + AVL + HG P +++
Sbjct: 238 GDVKELKLLRSEFGDK----SPAVSATKAMTGNLSSAAVVLAVDEAVLMLEHGFIPPSIH 293
Query: 428 LAKPDPIFNDNFMPLTASKDMPISAALSNSFGFGGTNASLL 468
+ + D +T + + AL N FG GGTNA+L+
Sbjct: 294 IEELDE---AGLNIVTETTPRELRTALLNGFGLGGTNATLV 331
|
Members are involved in the synthesis of fatty acids and polyketides, a diverse group of natural products. Both pathways are an iterative series of additions of small carbon units, usually acetate, to a nascent acyl group. There are 2 classes of decarboxylating condensing enzymes, which can be distinguished by sequence similarity, type of active site residues and type of primer units (acetyl CoA or acyl carrier protein (ACP) linked units). Length = 332 |
| >gnl|CDD|215723 pfam00109, ketoacyl-synt, Beta-ketoacyl synthase, N-terminal domain | Back alignment and domain information |
|---|
Score = 181 bits (462), Expect = 3e-54
Identities = 82/270 (30%), Positives = 120/270 (44%), Gaps = 32/270 (11%)
Query: 39 RRVVVTGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSK 98
V +TG+G P G G E W L+ G IRE + + S+
Sbjct: 2 EPVAITGMGCRFPGGVGPEEFWELLLAGRDAIREFPADLSGL-------------YPPSR 48
Query: 99 VAAVVPCGISSGEFNEDSWLNSKDHRSIA---RFIAYALCAADEALHDAKWLPSDQGQKE 155
VA + F+ D+ R AL AA EAL DA P+ +
Sbjct: 49 VAGEIYG------FDFDAAFFGISPREAEAMDPQQRLALEAAWEALEDAGLDPASLRGSD 102
Query: 156 RTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYGFQGPNHA 215
RTGV +G G G D + + RR+SP+ + ++A+G +S + G +GP+
Sbjct: 103 RTGVFVGSGSG---DYAELQALDSAGGPRRVSPYLTGAWMPSVAAGRISYRLGLRGPSVT 159
Query: 216 AVTACATGAHSIGDAA-RMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQ 274
TAC++ AA R I+ G+ D+ +AGG E+ + AGF + AL + P
Sbjct: 160 VDTACSSS-LVALHAAVRSIRRGECDLALAGGVEAPLTPGGFAGFSAAGALLSPDG--PC 216
Query: 275 EASRPFDCGRDGFVIGEGSGVLVLEELEHA 304
+A PF DGFV GEG G ++L+EL A
Sbjct: 217 KAFDPFA---DGFVRGEGVGAVLLKELSEA 243
|
The structure of beta-ketoacyl synthase is similar to that of the thiolase family (pfam00108) and also chalcone synthase. The active site of beta-ketoacyl synthase is located between the N and C-terminal domains. The N-terminal domain contains most of the structures involved in dimer formation and also the active site cysteine. Length = 243 |
| >gnl|CDD|238428 cd00832, CLF, Chain-length factor (CLF) is a factor required for polyketide chain initiation of aromatic antibiotic-producing polyketide synthases (PKSs) of filamentous bacteria | Back alignment and domain information |
|---|
Score = 166 bits (423), Expect = 7e-47
Identities = 126/436 (28%), Positives = 189/436 (43%), Gaps = 44/436 (10%)
Query: 39 RRVVVTGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSK 98
RR VVTGIG+V P G G E W+ ++ G G+ IT D ++
Sbjct: 1 RRAVVTGIGVVAPNGLGVEEYWKAVLDGRSGLGPITRFDP--------------SGYPAR 46
Query: 99 VAAVVPCGISSGEFNEDSWLNSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERTG 158
+A VP + E L D R AL AAD AL DA P+ + G
Sbjct: 47 LAGEVP-DFDAAEHLPGRLLPQTD-----RMTRLALAAADWALADAGVDPAALPPYDM-G 99
Query: 159 VSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYGFQGPNHAAVT 218
V G Q + K R +S + + +G +S+++G +GP+ V
Sbjct: 100 VVTASAAGGFEFGQRELQKLWSKGPRHVSAYQSFAWFYAVNTGQISIRHGMRGPSGVVVA 159
Query: 219 ACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASR 278
A G ++ A R+++ G + ++V+GG +S++ S L+T + P A
Sbjct: 160 EQAGGLDALAQARRLVRRG-TPLVVSGGVDSALCPWGWVAQLSSGRLST--SDDPARAYL 216
Query: 279 PFDCGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAI 338
PFD G+V GEG +LVLE+ A++RGA++Y E+ GY + D P G+
Sbjct: 217 PFDAAAAGYVPGEGGAILVLEDAAAARERGARVYGEIAGYAATFDP-----PPGSGRPPG 271
Query: 339 L--AMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKG 396
L A+ AL +GL VD V A A P D EA A+ VF + ++ K
Sbjct: 272 LARAIRLALADAGLTPEDVDVVFADAAGVPELDRAEAAALAAVFG----PRGVPVTAPKT 327
Query: 397 AIGHLLGAAGAVEAIFAVLAIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPISAALSN 456
G L ++ A+LA+ GV P T+N+ P + L P AAL
Sbjct: 328 MTGRLYAGGAPLDVATALLALRDGVIPPTVNVTDVPPAY-----GLDLVTGRPRPAALRT 382
Query: 457 SF----GFGGTNASLL 468
+ G GG N++L+
Sbjct: 383 ALVLARGRGGFNSALV 398
|
CLFs have been shown to have decarboxylase activity towards malonyl-acyl carrier protein (ACP). CLFs are similar to other elongation ketosynthase domains, but their active site cysteine is replaced by a conserved glutamine. Length = 399 |
| >gnl|CDD|225858 COG3321, COG3321, Polyketide synthase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 166 bits (421), Expect = 4e-44
Identities = 124/443 (27%), Positives = 190/443 (42%), Gaps = 54/443 (12%)
Query: 48 MVTPLGC---GA---ETTWRRLIVGECGIREITPEDLKM-GNFDRETQLHAFGQLTSKVA 100
+ + C GA E W L G I E+ + + +D + G+ S+
Sbjct: 7 AIIGMACRFPGADSPEEFWDLLKEGRDEITEVPADRWDVDAYYDPDP--TVPGKSYSRWG 64
Query: 101 AVVPC--GISSGEFNEDSWLNSKDHRSI---ARFIAYALCAADEALHDAKWLPSDQGQKE 155
+ + F ++ ++ ++ R + L A EAL DA P D +
Sbjct: 65 GFLDDVDDFDALFFG----ISPREAEAMDPQQRLL---LEVAWEALEDAGIYP-DSLRGS 116
Query: 156 RTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYGFQGPNHA 215
TGV G + + A + I ++A+G +S G GP+
Sbjct: 117 ATGVFAGASVADYLLLLLAD-------DEAEPEYAITGNSSSVAAGRISYVLGLSGPSVT 169
Query: 216 AVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQE 275
TAC++ ++ A + ++ G+ D+ +AGG + S F L+ P
Sbjct: 170 VDTACSSSLVAVHLACQSLRLGECDLALAGGVNLVLSPESSYLFSAGGMLS------PDG 223
Query: 276 ASRPFDCGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAH--HITQPHID 333
+ FD DG+V GEG+GV+VL+ L A++ G +IYA +RG ++ D +T P +
Sbjct: 224 RCKAFDADADGYVRGEGAGVVVLKRLSDAERDGDRIYAVIRGSAVNQDGRSNGLTAP--N 281
Query: 334 GKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSS 393
+ + AL +G+ V YV AH T TPLGD +EA A+ V+ + A + A S
Sbjct: 282 LEAQADVIREALADAGIDPATVQYVEAHGTGTPLGDPIEANALGAVYGEGAPAQPCAIGS 341
Query: 394 TKGAIGHLLGAAGAVEAIFAVLAIHHGVAPLTLNLAKPDPIFNDNFM-----------PL 442
K IGHL AAG I LA+ HG P TL+ P+P +F P
Sbjct: 342 VKSNIGHLEAAAGIAGLIKTALALKHGYIPPTLHFDTPNP--EIDFDSSPFVVPTEATPW 399
Query: 443 TASKDMPISAALSNSFGFGGTNA 465
P A +S SFGFGGTNA
Sbjct: 400 PTGGG-PRRAGVS-SFGFGGTNA 420
|
Length = 1061 |
| >gnl|CDD|217236 pfam02801, Ketoacyl-synt_C, Beta-ketoacyl synthase, C-terminal domain | Back alignment and domain information |
|---|
Score = 148 bits (375), Expect = 3e-43
Identities = 54/118 (45%), Positives = 64/118 (54%), Gaps = 1/118 (0%)
Query: 312 YAEVRGYGMSGD-AHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDT 370
YA +RG ++ D A H +G A+ AL +GL VDYV AH T TPLGD
Sbjct: 1 YAVIRGSAVNQDGAAHNGLTAPNGPAQARAIRAALADAGLDPEDVDYVEAHGTGTPLGDP 60
Query: 371 VEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLAIHHGVAPLTLNL 428
+EA A++ VF S L S K IGHL AAG I AVLA+ HGV P TLNL
Sbjct: 61 IEAEALKAVFGPGRDSQPLPVGSVKSNIGHLEAAAGVAGLIKAVLALRHGVIPPTLNL 118
|
The structure of beta-ketoacyl synthase is similar to that of the thiolase family (pfam00108) and also chalcone synthase. The active site of beta-ketoacyl synthase is located between the N and C-terminal domains. Length = 119 |
| >gnl|CDD|234022 TIGR02813, omega_3_PfaA, polyketide-type polyunsaturated fatty acid synthase PfaA | Back alignment and domain information |
|---|
Score = 152 bits (385), Expect = 2e-39
Identities = 112/369 (30%), Positives = 168/369 (45%), Gaps = 48/369 (13%)
Query: 133 ALCAADEALHDAKWLPSDQGQKERTGVSIG-GGIGSISDTVDA----------------- 174
+L A E L+DA LP +++ G+++G GG S +++A
Sbjct: 97 SLVVAKEVLNDAG-LPDGY-DRDKIGITLGVGGGQKQSSSLNARLQYPVLKKVFKASGVE 154
Query: 175 ---AQMICEKRLRRLSPF---FIPRILINMASGHVSMKYGFQGPNHAAVTACATGAHSIG 228
++M+ +K + + P L N+ SG ++ ++ G N ACA +I
Sbjct: 155 DEDSEMLIKKFQDQYIHWEENSFPGSLGNVISGRIANRFDLGGMNCVVDAACAGSLAAIR 214
Query: 229 DAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDGFV 288
A + G S++M+ GG + F K+ A TT E +PFD G +
Sbjct: 215 MALSELLEGRSEMMITGGVCTDNSPFMYMSFSKTPAFTT------NEDIQPFDIDSKGMM 268
Query: 289 IGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAH--HITQPHIDGKGAILAMTRALK 346
IGEG G++ L+ LE A++ G +IYA ++G G S D I P +G+ A+ RA
Sbjct: 269 IGEGIGMMALKRLEDAERDGDRIYAVIKGVGASSDGKFKSIYAPRPEGQAK--ALKRAYD 326
Query: 347 QSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFS-DHATSGSLAFSSTKGAIGHLLGAA 405
+G H + AH T T GD E + +VFS D+ +A S K IGH A
Sbjct: 327 DAGFAPHTCGLIEAHGTGTAAGDVAEFGGLVSVFSQDNDQKQHIALGSVKSQIGHTKSTA 386
Query: 406 GAVEAIFAVLAIHHGVAPLTLNLAKPDPIFNDNFMP----------LTASKDMPISAALS 455
G I AVLA+HH V P T+N+ +P+P + P + P A +S
Sbjct: 387 GTAGMIKAVLALHHKVLPPTINVDQPNPKLDIENSPFYLNTETRPWMQREDGTPRRAGIS 446
Query: 456 NSFGFGGTN 464
SFGFGGTN
Sbjct: 447 -SFGFGGTN 454
|
Members of the seed for this alignment are involved in omega-3 polyunsaturated fatty acid biosynthesis, such as the protein PfaA from the eicosapentaenoic acid biosynthesis operon in Photobacterium profundum strain SS9. PfaA is encoded together with PfaB, PfaC, and PfaD, and the functions of the individual polypeptides have not yet been described. More distant homologs of PfaA, also included with the reach of this model, appear to be involved in polyketide-like biosynthetic mechanisms of polyunsaturated fatty acid biosynthesis, an alternative to the more familiar iterated mechanism of chain extension and desaturation, and in most cases are encoded near genes for homologs of PfaB, PfaC, and/or PfaD. Length = 2582 |
| >gnl|CDD|238201 cd00327, cond_enzymes, Condensing enzymes; Family of enzymes that catalyze a (decarboxylating or non-decarboxylating) Claisen-like condensation reaction | Back alignment and domain information |
|---|
Score = 122 bits (308), Expect = 6e-32
Identities = 76/272 (27%), Positives = 109/272 (40%), Gaps = 66/272 (24%)
Query: 199 ASGHVSMKYGFQ-GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMA 257
A+G ++ G GP ++ ACATG ++ A + +Q G +D+++AGG+E
Sbjct: 46 AAGQLAYHLGISGGPAYSVNQACATGLTALALAVQQVQNGKADIVLAGGSEE-------- 97
Query: 258 GFCKSRALTTKYNGTPQEASRPFDCGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRG 317
FV G+G+ V+E EHA +RGA AE+
Sbjct: 98 -----------------------------FVFGDGAAAAVVESEEHALRRGAHPQAEIVS 128
Query: 318 YGMSGD-AHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAI 376
+ D A + G+G A +AL+ +GL +DYV AH T TP+GD VE
Sbjct: 129 TAATFDGASMVPAV--SGEGLARAARKALEGAGLTPSDIDYVEAHGTGTPIGDAVELALG 186
Query: 377 RTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLAIHHGVAPLTLNLAKPDPIFN 436
S A S+T GH LGAAG +L + H P T
Sbjct: 187 LDPDGVR----SPAVSATLIMTGHPLGAAGLAILDELLLMLEHEFIPPT----------- 231
Query: 437 DNFMPLTASKDMPISAALSNSFGFGGTNASLL 468
L FG GGTNA+++
Sbjct: 232 ----------PREPRTVLLLGFGLGGTNAAVV 253
|
Members are share strong structural similarity, and are involved in the synthesis and degradation of fatty acids, and the production of polyketides, a diverse group of natural products. Length = 254 |
| >gnl|CDD|214836 smart00825, PKS_KS, Beta-ketoacyl synthase | Back alignment and domain information |
|---|
Score = 99.7 bits (250), Expect = 2e-23
Identities = 70/261 (26%), Positives = 103/261 (39%), Gaps = 70/261 (26%)
Query: 218 TACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEAS 277
TAC++ ++ A + ++ G+ D+ +AGG + + G ++ L+ P
Sbjct: 95 TACSSSLVALHLACQSLRSGECDMALAGGVNLILSPDTFVGLSRAGMLS------PDGRC 148
Query: 278 RPFDCGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGM--SGDAHHITQPHIDGK 335
+ FD DG+V GEG GV+VL+ L A + G I A +RG + G ++ IT P +
Sbjct: 149 KTFDASADGYVRGEGVGVVVLKRLSDALRDGDPILAVIRGSAVNQDGRSNGITAPSGPAQ 208
Query: 336 GAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTK 395
I GS+ K
Sbjct: 209 LLI------------------------------------------------GSV-----K 215
Query: 396 GAIGHLLGAAGAVEAIFAVLAIHHGVAPLTLNLAKPDPI---FNDNFMPLT-----ASKD 447
IGHL AAG I VLA+ HGV P TL+ P+P T
Sbjct: 216 SNIGHLEAAAGVAGLIKVVLALKHGVIPPTLHFETPNPHIDLEESPLRVPTELTPWPPPG 275
Query: 448 MPISAALSNSFGFGGTNASLL 468
P A + +SFGFGGTNA ++
Sbjct: 276 RPRRAGV-SSFGFGGTNAHVI 295
|
The structure of beta-ketoacyl synthase is similar to that of the thiolase family and also chalcone synthase. The active site of beta-ketoacyl synthase is located between the N and C-terminal domains. Length = 298 |
| >gnl|CDD|235715 PRK06147, PRK06147, 3-oxoacyl-(acyl carrier protein) synthase; Validated | Back alignment and domain information |
|---|
Score = 52.7 bits (127), Expect = 2e-07
Identities = 61/324 (18%), Positives = 103/324 (31%), Gaps = 73/324 (22%)
Query: 39 RRVVVTGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSK 98
R + + G GMVT +G A ++ + + NF ET+
Sbjct: 3 RALAIVGSGMVTAVGLDAPSSCAAI---RARLD----------NFQ-ETRFIDPPGGEWL 48
Query: 99 VAAVVPCGISSGEFNEDSWLNSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKER-T 157
+ A VP W R R A A EAL D +
Sbjct: 49 IGAPVPL--------PPPW------RGPERLAEMAAPAIAEALEGLP--ALDASEAPLLL 92
Query: 158 GVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYGFQGPNHAAV 217
V+ G D + + + RL P + +A G VS
Sbjct: 93 CVAEEERPGR---PPDLEERLLRELEARLGLRLEPGSAV-IARGRVSG------------ 136
Query: 218 TACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEAS 277
A ++ A R+I G ++ G +S + ++A + L T N
Sbjct: 137 ------AVALAQARRLIAAGGCPRVLVAGVDSLLTGPTLAHYEARDRLLTSQNS------ 184
Query: 278 RPFDCGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPH---IDG 334
+GF+ GE + ++L + G + G G+ + + + + G
Sbjct: 185 -------NGFIPGEAAAAVLLGRPAGGEAPGLPLL----GLGLGREPAPVGESEDLPLRG 233
Query: 335 KGAILAMTRALKQSGLQSHQVDYV 358
G A+ AL ++G +DY
Sbjct: 234 DGLTQAIRAALAEAGCGLEDMDYR 257
|
Length = 348 |
| >gnl|CDD|238383 cd00751, thiolase, Thiolase are ubiquitous enzymes that catalyze the reversible thiolytic cleavage of 3-ketoacyl-CoA into acyl-CoA and acetyl-CoA, a 2-step reaction involving a covalent intermediate formed with a catalytic cysteine | Back alignment and domain information |
|---|
Score = 48.2 bits (116), Expect = 5e-06
Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 4/70 (5%)
Query: 219 ACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASR 278
C +G ++ AA+ I G++DV+VAGG ES +S A + +A G
Sbjct: 83 VCGSGLQAVALAAQSIAAGEADVVVAGGVES----MSRAPYLLPKARRGGRLGLNTLDGM 138
Query: 279 PFDCGRDGFV 288
D D F
Sbjct: 139 LDDGLTDPFT 148
|
They are found in prokaryotes and eukaryotes (cytosol, microbodies and mitochondria). There are 2 functional different classes: thiolase-I (3-ketoacyl-CoA thiolase) and thiolase-II (acetoacetyl-CoA thiolase). Thiolase-I can cleave longer fatty acid molecules and plays an important role in the beta-oxidative degradation of fatty acids. Thiolase-II has a high substrate specificity. Although it can cleave acetoacyl-CoA, its main function is the synthesis of acetoacyl-CoA from two molecules of acetyl-CoA, which gives it importance in several biosynthetic pathways. Length = 386 |
| >gnl|CDD|235819 PRK06519, PRK06519, 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed | Back alignment and domain information |
|---|
Score = 45.7 bits (109), Expect = 3e-05
Identities = 63/262 (24%), Positives = 94/262 (35%), Gaps = 46/262 (17%)
Query: 173 DAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYG-------FQGPNHAAVTACATGAH 225
D ++ E+ + L P L N+ +G++S+ + F G A V+A
Sbjct: 128 DRGVLLNERLMTELRPTLFLAQLSNLLAGNISIVHKVTGSSRTFMGEESAGVSAIEI--- 184
Query: 226 SIGDAARMIQFGDSDVMVAGGTES--SIDAL---SMAGFCKSRALTTKYNGTPQEASRPF 280
A I G SD + GG + D L + G K P +
Sbjct: 185 ----AFARIASGQSDHALVGGAYNAERPDMLLLYELGGLL------LKGGWAPVWSRGGE 234
Query: 281 DCGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILA 340
D G GF++G G LVLE EHA+ RGA+ YA + G + L
Sbjct: 235 DGG--GFILGSGGAFLVLESREHAEARGARPYARISG---------VESDRARRAPGDLE 283
Query: 341 --MTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKGAI 398
+ R LK +G + V + AT ATA + A +G
Sbjct: 284 ASLERLLKPAGGLA-APTAVISGATGAH-----PATAEEKAALEAALAG--PVRGIGTLF 335
Query: 399 GHLLGAAGAVEAIFAVLAIHHG 420
GH + A + A L++ G
Sbjct: 336 GHTMEAQFPLGLALAALSVSKG 357
|
Length = 398 |
| >gnl|CDD|181625 PRK09051, PRK09051, beta-ketothiolase; Provisional | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 1e-04
Identities = 39/138 (28%), Positives = 59/138 (42%), Gaps = 29/138 (21%)
Query: 289 IGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQS 348
I +G+ +VL E + A+ RG K A + GY +G P G G + A +AL+++
Sbjct: 251 INDGAAAVVLAEADAAEARGLKPLARLVGYAHAG-----VDPEYMGIGPVPATQKALERA 305
Query: 349 GLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTK-----GAI--GHL 401
GL +D + A+ EA A + A + L K I GH
Sbjct: 306 GLTVADLDVIEAN----------EAFAAQAC----AVTRELGLDPAKVNPNGSGISLGHP 351
Query: 402 LGAAGAVEAIFAVLAIHH 419
+GA G AI V A++
Sbjct: 352 VGATG---AIITVKALYE 366
|
Length = 394 |
| >gnl|CDD|180261 PRK05790, PRK05790, putative acyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 43.6 bits (104), Expect = 2e-04
Identities = 14/30 (46%), Positives = 22/30 (73%)
Query: 220 CATGAHSIGDAARMIQFGDSDVMVAGGTES 249
C +G ++ AA+ I+ GD+D++VAGG ES
Sbjct: 88 CGSGLKAVALAAQAIRAGDADIVVAGGQES 117
|
Length = 393 |
| >gnl|CDD|238383 cd00751, thiolase, Thiolase are ubiquitous enzymes that catalyze the reversible thiolytic cleavage of 3-ketoacyl-CoA into acyl-CoA and acetyl-CoA, a 2-step reaction involving a covalent intermediate formed with a catalytic cysteine | Back alignment and domain information |
|---|
Score = 42.9 bits (102), Expect = 3e-04
Identities = 38/122 (31%), Positives = 56/122 (45%), Gaps = 27/122 (22%)
Query: 293 SGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQS 352
+ VL++ E E AK+ G K A + GY ++G P I G G + A+ +ALK++GL
Sbjct: 249 AAVLLMSE-EKAKELGLKPLARIVGYAVAGVD-----PAIMGIGPVPAIPKALKRAGLTL 302
Query: 353 HQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTK-----GAI--GHLLGAA 405
+D + + EA A + + L K GAI GH LGA+
Sbjct: 303 DDIDLIEIN----------EAFAAQALACLKE----LGLDPEKVNVNGGAIALGHPLGAS 348
Query: 406 GA 407
GA
Sbjct: 349 GA 350
|
They are found in prokaryotes and eukaryotes (cytosol, microbodies and mitochondria). There are 2 functional different classes: thiolase-I (3-ketoacyl-CoA thiolase) and thiolase-II (acetoacetyl-CoA thiolase). Thiolase-I can cleave longer fatty acid molecules and plays an important role in the beta-oxidative degradation of fatty acids. Thiolase-II has a high substrate specificity. Although it can cleave acetoacyl-CoA, its main function is the synthesis of acetoacyl-CoA from two molecules of acetyl-CoA, which gives it importance in several biosynthetic pathways. Length = 386 |
| >gnl|CDD|180563 PRK06445, PRK06445, acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 4e-04
Identities = 36/121 (29%), Positives = 56/121 (46%), Gaps = 22/121 (18%)
Query: 292 GSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQ 351
G+ ++L + KK G K A++R +G +G P I GKG + A +AL+++GL
Sbjct: 254 GASYVLLMSKKAVKKYGLKPMAKIRSFGFAG-----VPPAIMGKGPVPASKKALEKAGLS 308
Query: 352 SHQVDY--VNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKG---AIGHLLGAAG 406
+D +N EA A+ +++ + KG AIGH LGA G
Sbjct: 309 VKDIDLWEIN------------EAFAVVVLYAIKELGLDPETVNIKGGAIAIGHPLGATG 356
Query: 407 A 407
A
Sbjct: 357 A 357
|
Length = 394 |
| >gnl|CDD|235653 PRK05952, PRK05952, 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 5e-04
Identities = 18/36 (50%), Positives = 26/36 (72%), Gaps = 1/36 (2%)
Query: 40 RVVVTGIGMVTPLGCGAETTWRRLIVGECGIREITP 75
+VVVTGIG+V+ LG E +W+RL+ G+ GI+ P
Sbjct: 3 KVVVTGIGLVSALG-DLEQSWQRLLQGKSGIKLHQP 37
|
Length = 381 |
| >gnl|CDD|181626 PRK09052, PRK09052, acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 5e-04
Identities = 14/30 (46%), Positives = 21/30 (70%)
Query: 220 CATGAHSIGDAARMIQFGDSDVMVAGGTES 249
CA+G ++ AA I+ G++DVM+A G ES
Sbjct: 95 CASGLQAVAMAADRIRVGEADVMIAAGVES 124
|
Length = 399 |
| >gnl|CDD|215347 PLN02644, PLN02644, acetyl-CoA C-acetyltransferase | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 6e-04
Identities = 39/128 (30%), Positives = 59/128 (46%), Gaps = 30/128 (23%)
Query: 289 IGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQS 348
I +G+ LVL E A + G ++ A++RGY DA P + LA+ +ALK +
Sbjct: 250 ISDGAAALVLVSGEKALELGLQVIAKIRGY---ADAAQ--APELFTTAPALAIPKALKHA 304
Query: 349 GLQSHQVDY--VNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTK-----GA--IG 399
GL++ QVDY +N EA ++ + A L K GA +G
Sbjct: 305 GLEASQVDYYEIN------------EAFSVVAL----ANQKLLGLDPEKVNVHGGAVSLG 348
Query: 400 HLLGAAGA 407
H +G +GA
Sbjct: 349 HPIGCSGA 356
|
Length = 394 |
| >gnl|CDD|233642 TIGR01930, AcCoA-C-Actrans, acetyl-CoA acetyltransferases | Back alignment and domain information |
|---|
Score = 41.4 bits (98), Expect = 7e-04
Identities = 15/32 (46%), Positives = 24/32 (75%)
Query: 219 ACATGAHSIGDAARMIQFGDSDVMVAGGTESS 250
CA+G ++ AA++I+ G++DV+VAGG ES
Sbjct: 82 QCASGLQAVILAAQLIRAGEADVVVAGGVESM 113
|
This model represents a large family of enzymes which catalyze the thiolysis of a linear fatty acid CoA (or acetoacetyl-CoA) using a second CoA molecule to produce acetyl-CoA and a CoA-ester product two carbons shorter (or, alternatively, the condensation of two molecules of acetyl-CoA to produce acetoacetyl-CoA and CoA). This enzyme is also known as "thiolase", "3-ketoacyl-CoA thiolase", "beta-ketothiolase" and "Fatty oxidation complex beta subunit". When catalyzing the degradative reaction on fatty acids the corresponding EC number is 2.3.1.16. The condensation reaction corresponds to 2.3.1.9. Note that the enzymes which catalyze the condensation are generally not involved in fatty acid biosynthesis, which is carried out by a decarboxylating condensation of acetyl and malonyl esters of acyl carrier proteins. Rather, this activity may produce acetoacetyl-CoA for pathways such as IPP biosynthesis in the absence of sufficient fatty acid oxidation [Fatty acid and phospholipid metabolism, Other]. Length = 386 |
| >gnl|CDD|215722 pfam00108, Thiolase_N, Thiolase, N-terminal domain | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 9e-04
Identities = 17/38 (44%), Positives = 25/38 (65%), Gaps = 3/38 (7%)
Query: 215 AAVT---ACATGAHSIGDAARMIQFGDSDVMVAGGTES 249
AVT C +G ++ AA+ I+ GD+D++VAGG ES
Sbjct: 78 PAVTINKVCGSGLKAVALAAQAIRAGDADIVVAGGVES 115
|
Thiolase is reported to be structurally related to beta-ketoacyl synthase (pfam00109), and also chalcone synthase. Length = 262 |
| >gnl|CDD|233642 TIGR01930, AcCoA-C-Actrans, acetyl-CoA acetyltransferases | Back alignment and domain information |
|---|
Score = 39.1 bits (92), Expect = 0.003
Identities = 36/123 (29%), Positives = 52/123 (42%), Gaps = 26/123 (21%)
Query: 292 GSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQ 351
G+ L+L E AK+ G A + Y ++G P I G G + A+ +ALK++GL
Sbjct: 248 GAAALLLMSEEKAKELGLTPLARIVSYAVAG-----VDPEIMGLGPVPAIPKALKKAGLS 302
Query: 352 SHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTK-----GAI--GHLLGA 404
+D + EA A + + L K GAI GH LGA
Sbjct: 303 ISDIDLFEIN----------EAFAAQVLACIKE----LGLDLEKVNVNGGAIALGHPLGA 348
Query: 405 AGA 407
+GA
Sbjct: 349 SGA 351
|
This model represents a large family of enzymes which catalyze the thiolysis of a linear fatty acid CoA (or acetoacetyl-CoA) using a second CoA molecule to produce acetyl-CoA and a CoA-ester product two carbons shorter (or, alternatively, the condensation of two molecules of acetyl-CoA to produce acetoacetyl-CoA and CoA). This enzyme is also known as "thiolase", "3-ketoacyl-CoA thiolase", "beta-ketothiolase" and "Fatty oxidation complex beta subunit". When catalyzing the degradative reaction on fatty acids the corresponding EC number is 2.3.1.16. The condensation reaction corresponds to 2.3.1.9. Note that the enzymes which catalyze the condensation are generally not involved in fatty acid biosynthesis, which is carried out by a decarboxylating condensation of acetyl and malonyl esters of acyl carrier proteins. Rather, this activity may produce acetoacetyl-CoA for pathways such as IPP biosynthesis in the absence of sufficient fatty acid oxidation [Fatty acid and phospholipid metabolism, Other]. Length = 386 |
| >gnl|CDD|223261 COG0183, PaaJ, Acetyl-CoA acetyltransferase [Lipid metabolism] | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 0.003
Identities = 16/35 (45%), Positives = 24/35 (68%)
Query: 219 ACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDA 253
ACA+G ++ AA+ I G++DV++AGG E DA
Sbjct: 91 ACASGLAAVRLAAQAIASGEADVVLAGGVEKMSDA 125
|
Length = 392 |
| >gnl|CDD|180261 PRK05790, PRK05790, putative acyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 39.0 bits (92), Expect = 0.004
Identities = 32/126 (25%), Positives = 54/126 (42%), Gaps = 26/126 (20%)
Query: 289 IGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQS 348
I +G+ +V+ AK+ G A + Y ++G P I G G + A+ +AL+++
Sbjct: 250 INDGAAAVVVMSEAKAKELGLTPLARIVSYAVAG-----VDPAIMGIGPVPAIRKALEKA 304
Query: 349 GLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTK-----GAI--GHL 401
G +D + + EA A + + + L K GAI GH
Sbjct: 305 GWSLADLDLIEIN----------EAFAAQALAVEKE----LGLDPEKVNVNGGAIALGHP 350
Query: 402 LGAAGA 407
+GA+GA
Sbjct: 351 IGASGA 356
|
Length = 393 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 473 | |||
| KOG1394 | 440 | consensus 3-oxoacyl-(acyl-carrier-protein) synthas | 100.0 | |
| PRK08722 | 414 | 3-oxoacyl-(acyl carrier protein) synthase II; Revi | 100.0 | |
| PLN02787 | 540 | 3-oxoacyl-[acyl-carrier-protein] synthase II | 100.0 | |
| COG0304 | 412 | FabB 3-oxoacyl-(acyl-carrier-protein) synthase [Li | 100.0 | |
| PRK06333 | 424 | 3-oxoacyl-(acyl carrier protein) synthase II; Revi | 100.0 | |
| PLN02836 | 437 | 3-oxoacyl-[acyl-carrier-protein] synthase | 100.0 | |
| PRK07967 | 406 | 3-oxoacyl-(acyl carrier protein) synthase I; Revie | 100.0 | |
| PRK07910 | 418 | 3-oxoacyl-(acyl carrier protein) synthase II; Revi | 100.0 | |
| PRK09116 | 405 | 3-oxoacyl-(acyl carrier protein) synthase II; Revi | 100.0 | |
| PRK07314 | 411 | 3-oxoacyl-(acyl carrier protein) synthase II; Revi | 100.0 | |
| cd00832 | 399 | CLF Chain-length factor (CLF) is a factor required | 100.0 | |
| PRK08439 | 406 | 3-oxoacyl-(acyl carrier protein) synthase II; Revi | 100.0 | |
| TIGR03150 | 407 | fabF beta-ketoacyl-acyl-carrier-protein synthase I | 100.0 | |
| TIGR02813 | 2582 | omega_3_PfaA polyketide-type polyunsaturated fatty | 100.0 | |
| PTZ00050 | 421 | 3-oxoacyl-acyl carrier protein synthase; Provision | 100.0 | |
| cd00834 | 406 | KAS_I_II Beta-ketoacyl-acyl carrier protein (ACP) | 100.0 | |
| PRK07103 | 410 | polyketide beta-ketoacyl:acyl carrier protein synt | 100.0 | |
| COG3321 | 1061 | Polyketide synthase modules and related proteins [ | 100.0 | |
| PRK05952 | 381 | 3-oxoacyl-(acyl carrier protein) synthase II; Revi | 100.0 | |
| cd00828 | 407 | elong_cond_enzymes "elongating" condensing enzymes | 100.0 | |
| PRK06501 | 425 | 3-oxoacyl-(acyl carrier protein) synthase II; Revi | 100.0 | |
| PRK14691 | 342 | 3-oxoacyl-(acyl carrier protein) synthase II; Prov | 100.0 | |
| smart00825 | 424 | PKS_KS Beta-ketoacyl synthase. The structure of be | 100.0 | |
| cd00833 | 421 | PKS polyketide synthases (PKSs) polymerize simple | 100.0 | |
| PRK09185 | 392 | 3-oxoacyl-(acyl carrier protein) synthase I; Revie | 100.0 | |
| PRK06519 | 398 | 3-oxoacyl-(acyl carrier protein) synthase II; Revi | 100.0 | |
| KOG1202 | 2376 | consensus Animal-type fatty acid synthase and rela | 100.0 | |
| PRK06147 | 348 | 3-oxoacyl-(acyl carrier protein) synthase; Validat | 100.0 | |
| cd00825 | 332 | decarbox_cond_enzymes decarboxylating condensing e | 100.0 | |
| PF00109 | 254 | ketoacyl-synt: Beta-ketoacyl synthase, N-terminal | 100.0 | |
| cd00327 | 254 | cond_enzymes Condensing enzymes; Family of enzymes | 100.0 | |
| PRK05656 | 393 | acetyl-CoA acetyltransferase; Provisional | 99.95 | |
| PRK12578 | 385 | acetyl-CoA acetyltransferase; Provisional | 99.95 | |
| PRK06633 | 392 | acetyl-CoA acetyltransferase; Provisional | 99.95 | |
| cd00751 | 386 | thiolase Thiolase are ubiquitous enzymes that cata | 99.95 | |
| PRK06064 | 389 | acetyl-CoA acetyltransferase; Provisional | 99.95 | |
| PRK09052 | 399 | acetyl-CoA acetyltransferase; Provisional | 99.95 | |
| PRK07108 | 392 | acetyl-CoA acetyltransferase; Provisional | 99.95 | |
| PRK13359 | 400 | beta-ketoadipyl CoA thiolase; Provisional | 99.94 | |
| TIGR01930 | 386 | AcCoA-C-Actrans acetyl-CoA acetyltransferases. Thi | 99.94 | |
| TIGR02430 | 400 | pcaF beta-ketoadipyl CoA thiolase. Members of this | 99.94 | |
| PRK09051 | 394 | beta-ketothiolase; Provisional | 99.94 | |
| PRK07516 | 389 | acetyl-CoA acetyltransferase; Provisional | 99.94 | |
| PRK05790 | 393 | putative acyltransferase; Provisional | 99.94 | |
| PRK06205 | 404 | acetyl-CoA acetyltransferase; Provisional | 99.94 | |
| PRK08242 | 402 | acetyl-CoA acetyltransferase; Validated | 99.94 | |
| PRK08256 | 391 | lipid-transfer protein; Provisional | 99.94 | |
| PRK06365 | 430 | acetyl-CoA acetyltransferase; Provisional | 99.94 | |
| PRK07661 | 391 | acetyl-CoA acetyltransferase; Provisional | 99.94 | |
| PRK09050 | 401 | beta-ketoadipyl CoA thiolase; Validated | 99.93 | |
| PLN02287 | 452 | 3-ketoacyl-CoA thiolase | 99.93 | |
| PRK08131 | 401 | acetyl-CoA acetyltransferase; Provisional | 99.93 | |
| PRK06059 | 399 | lipid-transfer protein; Provisional | 99.93 | |
| PRK08313 | 386 | acetyl-CoA acetyltransferase; Provisional | 99.93 | |
| PRK06954 | 397 | acetyl-CoA acetyltransferase; Provisional | 99.93 | |
| PRK06065 | 392 | acetyl-CoA acetyltransferase; Provisional | 99.93 | |
| cd00829 | 375 | SCP-x_thiolase Thiolase domain associated with ste | 99.93 | |
| PTZ00455 | 438 | 3-ketoacyl-CoA thiolase; Provisional | 99.93 | |
| PRK07851 | 406 | acetyl-CoA acetyltransferase; Provisional | 99.93 | |
| PRK06158 | 384 | thiolase; Provisional | 99.93 | |
| PRK06157 | 398 | acetyl-CoA acetyltransferase; Validated | 99.93 | |
| PRK06366 | 388 | acetyl-CoA acetyltransferase; Provisional | 99.93 | |
| PRK07850 | 387 | acetyl-CoA acetyltransferase; Provisional | 99.92 | |
| PRK06445 | 394 | acetyl-CoA acetyltransferase; Provisional | 99.92 | |
| PF02801 | 119 | Ketoacyl-synt_C: Beta-ketoacyl synthase, C-termina | 99.92 | |
| PLN02644 | 394 | acetyl-CoA C-acetyltransferase | 99.92 | |
| PRK08235 | 393 | acetyl-CoA acetyltransferase; Provisional | 99.92 | |
| PRK06289 | 403 | acetyl-CoA acetyltransferase; Provisional | 99.92 | |
| PRK08947 | 387 | fadA 3-ketoacyl-CoA thiolase; Reviewed | 99.92 | |
| PRK08142 | 388 | acetyl-CoA acetyltransferase; Provisional | 99.92 | |
| PRK08963 | 428 | fadI 3-ketoacyl-CoA thiolase; Reviewed | 99.92 | |
| TIGR02445 | 385 | fadA fatty oxidation complex, beta subunit FadA. T | 99.92 | |
| PRK06066 | 385 | acetyl-CoA acetyltransferase; Provisional | 99.92 | |
| cd00826 | 393 | nondecarbox_cond_enzymes nondecarboxylating conden | 99.92 | |
| PRK08170 | 426 | acetyl-CoA acetyltransferase; Provisional | 99.91 | |
| PRK06504 | 390 | acetyl-CoA acetyltransferase; Provisional | 99.91 | |
| PRK07801 | 382 | acetyl-CoA acetyltransferase; Provisional | 99.91 | |
| TIGR02446 | 430 | FadI fatty oxidation complex, beta subunit FadI. T | 99.91 | |
| PRK09268 | 427 | acetyl-CoA acetyltransferase; Provisional | 99.89 | |
| PRK06025 | 417 | acetyl-CoA acetyltransferase; Provisional | 99.88 | |
| PRK06690 | 361 | acetyl-CoA acetyltransferase; Provisional | 99.88 | |
| PRK07515 | 372 | 3-oxoacyl-(acyl carrier protein) synthase III; Rev | 99.88 | |
| COG0332 | 323 | FabH 3-oxoacyl-[acyl-carrier-protein] | 99.87 | |
| KOG1390 | 396 | consensus Acetyl-CoA acetyltransferase [Lipid tran | 99.87 | |
| PRK07937 | 352 | lipid-transfer protein; Provisional | 99.85 | |
| PRK07855 | 386 | lipid-transfer protein; Provisional | 99.85 | |
| PRK07204 | 329 | 3-oxoacyl-(acyl carrier protein) synthase III; Rev | 99.85 | |
| PRK08257 | 498 | acetyl-CoA acetyltransferase; Validated | 99.84 | |
| PRK09352 | 319 | 3-oxoacyl-(acyl carrier protein) synthase III; Rev | 99.83 | |
| TIGR00747 | 318 | fabH 3-oxoacyl-(acyl-carrier-protein) synthase III | 99.8 | |
| PRK06816 | 378 | 3-oxoacyl-(acyl carrier protein) synthase III; Rev | 99.79 | |
| PRK12879 | 325 | 3-oxoacyl-(acyl carrier protein) synthase III; Rev | 99.79 | |
| KOG1406 | 408 | consensus Peroxisomal 3-ketoacyl-CoA-thiolase P-44 | 99.79 | |
| cd00830 | 320 | KAS_III Ketoacyl-acyl carrier protein synthase III | 99.77 | |
| PRK09258 | 338 | 3-oxoacyl-(acyl carrier protein) synthase III; Rev | 99.77 | |
| PLN02326 | 379 | 3-oxoacyl-[acyl-carrier-protein] synthase III | 99.77 | |
| KOG1389 | 435 | consensus 3-oxoacyl CoA thiolase [Lipid transport | 99.76 | |
| CHL00203 | 326 | fabH 3-oxoacyl-acyl-carrier-protein synthase 3; Pr | 99.76 | |
| KOG1391 | 396 | consensus Acetyl-CoA acetyltransferase [Lipid tran | 99.75 | |
| PRK06840 | 339 | hypothetical protein; Validated | 99.74 | |
| TIGR00748 | 345 | HMG_CoA_syn_Arc hydroxymethylglutaryl-CoA synthase | 99.71 | |
| PRK05963 | 326 | 3-oxoacyl-(acyl carrier protein) synthase II; Revi | 99.7 | |
| PRK04262 | 347 | hypothetical protein; Provisional | 99.68 | |
| COG0183 | 392 | PaaJ Acetyl-CoA acetyltransferase [Lipid metabolis | 99.65 | |
| PRK12880 | 353 | 3-oxoacyl-(acyl carrier protein) synthase III; Rev | 99.64 | |
| cd00827 | 324 | init_cond_enzymes "initiating" condensing enzymes | 99.63 | |
| KOG1392 | 465 | consensus Acetyl-CoA acetyltransferase [Lipid tran | 99.59 | |
| cd00831 | 361 | CHS_like Chalcone and stilbene synthases; plant-sp | 99.58 | |
| PLN03169 | 391 | chalcone synthase family protein; Provisional | 99.58 | |
| PLN03172 | 393 | chalcone synthase family protein; Provisional | 99.55 | |
| TIGR02845 | 327 | spore_V_AD stage V sporulation protein AD. Bacillu | 99.52 | |
| PLN03170 | 401 | chalcone synthase; Provisional | 99.51 | |
| PLN03171 | 399 | chalcone synthase-like protein; Provisional | 99.5 | |
| PLN03168 | 389 | chalcone synthase; Provisional | 99.41 | |
| PRK08304 | 337 | stage V sporulation protein AD; Validated | 99.4 | |
| PLN03173 | 391 | chalcone synthase; Provisional | 99.4 | |
| TIGR01835 | 379 | HMG-CoA-S_prok 3-hydroxy-3-methylglutaryl CoA synt | 99.38 | |
| PF02803 | 123 | Thiolase_C: Thiolase, C-terminal domain; InterPro: | 99.36 | |
| PLN02854 | 521 | 3-ketoacyl-CoA synthase | 99.36 | |
| PLN02377 | 502 | 3-ketoacyl-CoA synthase | 99.34 | |
| COG3425 | 377 | PksG 3-hydroxy-3-methylglutaryl CoA synthase [Lipi | 99.32 | |
| PLN02577 | 459 | hydroxymethylglutaryl-CoA synthase | 99.26 | |
| PRK12404 | 334 | stage V sporulation protein AD; Provisional | 99.21 | |
| PLN02932 | 478 | 3-ketoacyl-CoA synthase | 99.2 | |
| PLN02192 | 511 | 3-ketoacyl-CoA synthase | 99.12 | |
| PF13723 | 218 | Ketoacyl-synt_2: Beta-ketoacyl synthase, N-termina | 99.09 | |
| TIGR01833 | 454 | HMG-CoA-S_euk 3-hydroxy-3-methylglutaryl-CoA-synth | 99.08 | |
| PF00108 | 264 | Thiolase_N: Thiolase, N-terminal domain; InterPro: | 98.93 | |
| COG3424 | 356 | BcsA Predicted naringenin-chalcone synthase [Secon | 98.93 | |
| PLN00415 | 466 | 3-ketoacyl-CoA synthase | 98.75 | |
| PF00195 | 226 | Chal_sti_synt_N: Chalcone and stilbene synthases, | 98.57 | |
| PF08392 | 290 | FAE1_CUT1_RppA: FAE1/Type III polyketide synthase- | 98.51 | |
| PF08545 | 80 | ACP_syn_III: 3-Oxoacyl-[acyl-carrier-protein (ACP) | 98.5 | |
| PF07451 | 329 | SpoVAD: Stage V sporulation protein AD (SpoVAD); I | 98.17 | |
| PF01154 | 174 | HMG_CoA_synt_N: Hydroxymethylglutaryl-coenzyme A s | 97.6 | |
| PF08541 | 90 | ACP_syn_III_C: 3-Oxoacyl-[acyl-carrier-protein (AC | 96.72 | |
| KOG1393 | 462 | consensus Hydroxymethylglutaryl-CoA synthase [Lipi | 86.1 | |
| PRK06065 | 392 | acetyl-CoA acetyltransferase; Provisional | 85.77 | |
| PRK08170 | 426 | acetyl-CoA acetyltransferase; Provisional | 85.33 | |
| PRK06158 | 384 | thiolase; Provisional | 85.2 | |
| PRK06059 | 399 | lipid-transfer protein; Provisional | 84.7 | |
| PLN02644 | 394 | acetyl-CoA C-acetyltransferase | 84.08 | |
| PRK12578 | 385 | acetyl-CoA acetyltransferase; Provisional | 83.96 | |
| PRK06157 | 398 | acetyl-CoA acetyltransferase; Validated | 83.09 | |
| PRK09051 | 394 | beta-ketothiolase; Provisional | 82.86 | |
| PRK06205 | 404 | acetyl-CoA acetyltransferase; Provisional | 82.63 | |
| PRK06365 | 430 | acetyl-CoA acetyltransferase; Provisional | 82.45 | |
| PRK08142 | 388 | acetyl-CoA acetyltransferase; Provisional | 81.74 | |
| cd00327 | 254 | cond_enzymes Condensing enzymes; Family of enzymes | 81.25 | |
| PRK07801 | 382 | acetyl-CoA acetyltransferase; Provisional | 81.03 | |
| PRK05790 | 393 | putative acyltransferase; Provisional | 80.83 | |
| PRK07855 | 386 | lipid-transfer protein; Provisional | 80.67 |
| >KOG1394 consensus 3-oxoacyl-(acyl-carrier-protein) synthase (I and II) [Lipid transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-87 Score=619.08 Aligned_cols=413 Identities=59% Similarity=0.958 Sum_probs=390.8
Q ss_pred CCceEEEecceecccCCCHHHHHHHHHcCCCceeeCCccccccCCCCccccccccCCcccceeEEecCCCCCCCCCcccC
Q 011989 38 LRRVVVTGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSKVAAVVPCGISSGEFNEDSW 117 (473)
Q Consensus 38 ~~~v~ItG~g~~~p~g~~~~~~~~~l~~G~s~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~~~~ 117 (473)
++||||||||+++|+|+++.++|++|.+|+++|+.+..++ +..++.++++.+|. |+...|
T Consensus 23 ~rRVVITGmG~VTplG~~v~~~w~~Ll~GesGI~~l~~~d--------------~k~~p~~v~g~Ip~------f~~e~~ 82 (440)
T KOG1394|consen 23 MRRVVITGMGAVTPLGNGVHTSWRNLLSGESGISSLEGPD--------------YKSIPFTVAGKIPR------FSVEDY 82 (440)
T ss_pred ceeEEEeccceeecCCCChHHHHHHhhccccCcccccccc--------------cccCcchheeeccc------cccccc
Confidence 7899999999999999999999999999999999999866 56788889999998 999999
Q ss_pred CCchhhhccCHHHHHHHHHHHHHHHHcCCCCC--CCCCCCceeEEEecCCCChhhHHHHHHHHHHhccccCCCcchhhhh
Q 011989 118 LNSKDHRSIARFIAYALCAADEALHDAKWLPS--DQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRIL 195 (473)
Q Consensus 118 ~~~~~~~~~~~~~~la~~aa~~Al~dAgl~~~--~~~~~~~~gvivg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (473)
++..+.++|+++.+|++.|+++||+||+|.+. +..+.+++||.+|+.++++..+......+.+++.++++|+..|..+
T Consensus 83 ~s~~~~r~ms~~~~~al~aa~eAL~da~~~~~~~~e~dk~~~GV~iGtgmg~l~~i~e~a~~~~~~g~rrvsPffVPkil 162 (440)
T KOG1394|consen 83 VSKGDERRMSKFTKLALTAAEEALKDAGLLDVNLSEEDKEKTGVLIGTGMGDLEDIYETAQNLSEKGYRRVSPFFVPKIL 162 (440)
T ss_pred cchhhhhhhhHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhceEeccccccHHHHHHHHHHHHHhcccccCccccchhh
Confidence 99999999999999999999999999999776 4446789999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHhcCCCCCeeeecCCcchHHHHHHHHHHHHHcCCCCEEEEeecCCCcChHHHHHHhhhhccccccCCCCCC
Q 011989 196 INMASGHVSMKYGFQGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQE 275 (473)
Q Consensus 196 ~~~~a~~ia~~lgl~Gp~~~v~~acasg~~Al~~A~~~I~~G~~d~vlv~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (473)
.|+.+++|++.+|++||+.+++++|++|..+|..|.+.|+.|++|++|++|+|.++.|..+.+|.+.+.++++ ++.|..
T Consensus 163 ~NM~ag~vsm~~gl~GpnhsvSTACATg~h~igda~n~Ir~GdaDvmlAGgsE~~I~PlslaGF~r~RALSt~-nd~P~~ 241 (440)
T KOG1394|consen 163 TNMAAGYVSMKYGLRGPNHSVSTACATGNHCIGDAFNFIRLGDADVMLAGGSEACINPLSLAGFSRARALSTR-NDNPQK 241 (440)
T ss_pred cccccchhhhhhcCcCCchhhHhhhhhccchHHHHHHHHHhCccceeeccCcceeecchhhhhHHHHHHhhhc-CCCccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999998 888999
Q ss_pred CCcCccCCCCceeeccceEEEEEccchHHHhcCCeEEEEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCc
Q 011989 276 ASRPFDCGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQV 355 (473)
Q Consensus 276 ~~~pfd~~~~G~~~geGaaavvL~~~~~A~~~g~~~~a~i~g~~~~~d~~~~~~~~~~~~~~~~a~~~al~~agl~~~dI 355 (473)
.+||||.+++||++|||++++|||++|+|++||++||+++.||+.++|.+|++.|++++.+...||++||++|||.|+||
T Consensus 242 aSRPfD~~RdGFVmGEGagvlvlEelEHA~~RgA~I~AE~lGygls~Da~HiT~P~~dG~Ga~~am~raL~~Agl~pe~i 321 (440)
T KOG1394|consen 242 ASRPFDKKRDGFVMGEGAGVLVLEELEHAKKRGAPIYAEVLGYGLSSDAYHITSPDPDGAGAVLAMERALKDAGLSPEDI 321 (440)
T ss_pred cCCCCccCCCceeeccceeEEehHhHHHHHHcCCceeHHhhcCcccccccccCCCCCCcchHHHHHHHHHHHcCCChhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEcCCCCCCCCHHHHHHHHHHhhcccCCCCceeeccccchhhhHHhHHHHHHHHHHHHHHhCccCCCCCCCCCCCCC
Q 011989 356 DYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLAIHHGVAPLTLNLAKPDPIF 435 (473)
Q Consensus 356 d~v~~hgtgt~~~D~~E~~a~~~~~~~~~~~~~~~v~s~k~~~Gh~~~AsG~~~li~~~~~l~~~~ipp~~~~~~~~~~~ 435 (473)
|||++|+|+|++||.+|..|++++|+.... ..+|+++|+.+||.+||+|.++.|..+++++++++||++|++.|++.+
T Consensus 322 ~YvNAHATST~~GD~aE~~Ai~~vf~~~~~--~~~vsStKgaiGHLLGAAGavEAi~Tv~ai~~~~lpptlNlen~d~~~ 399 (440)
T KOG1394|consen 322 DYVNAHATSTPLGDAAEAEAIKRVFGEHNI--ASKVSSTKGAIGHLLGAAGAVEAIFTVLAINDGVLPPTLNLENPDPGV 399 (440)
T ss_pred CeeecccccCcCchHHHHHHHHHHhccCCc--ccccccccchhhhhcccccchhhHhhhhhhhcCccCCcccccCCCccc
Confidence 999999999999999999999999997652 237999999999999999999999999999999999999999999999
Q ss_pred CCCCCcccc--CC-CCCCcEEEEeccccccceeeEEEeecC
Q 011989 436 NDNFMPLTA--SK-DMPISAALSNSFGFGGTNASLLFTKCQ 473 (473)
Q Consensus 436 ~~~~~~~~~--~~-~~~~~~~l~~s~g~gG~~~~~vl~~~~ 473 (473)
+.+++|+.. .. ..+++++|+|||||||+|+++++.+|+
T Consensus 400 d~~~~~~~~~~~~~~~~~~valsNSFGFGGtNaSl~fa~~~ 440 (440)
T KOG1394|consen 400 DLDYVPLKASEKKGGNKVRVALSNSFGFGGTNASLCFAKFK 440 (440)
T ss_pred cccccccccccccccccceEEEecccccCCcchhheeeecC
Confidence 999776422 22 245889999999999999999999985
|
|
| >PRK08722 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-77 Score=607.32 Aligned_cols=411 Identities=46% Similarity=0.804 Sum_probs=377.3
Q ss_pred CCceEEEecceecccCCCHHHHHHHHHcCCCceeeCCccccccCCCCccccccccCCcccceeEEecCCCCCCCCCcccC
Q 011989 38 LRRVVVTGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSKVAAVVPCGISSGEFNEDSW 117 (473)
Q Consensus 38 ~~~v~ItG~g~~~p~g~~~~~~~~~l~~G~s~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~~~~ 117 (473)
.++|||||||+++|.|.++++||++|++|+++|++++.++ ...++.++++.+++ ||++.|
T Consensus 3 ~~~VvItG~g~~~p~g~~~~~~w~~L~~g~s~i~~~~~~~--------------~~~~~~~~~g~i~~------~~~~~~ 62 (414)
T PRK08722 3 KRRVVVTGMGMLSPVGNTVESSWKALLAGQSGIVNIEHFD--------------TTNFSTRFAGLVKD------FNCEEY 62 (414)
T ss_pred CCCEEEEeeEEECCCCCCHHHHHHHHHhCCCeeeecCccc--------------cccCCCceeEEcCC------CChhHc
Confidence 4789999999999999999999999999999999987644 23456678888876 898888
Q ss_pred CCchhhhccCHHHHHHHHHHHHHHHHcCCCCCCCCCCCceeEEEecCCCChhhHHHHHHHHHHhccccCCCcchhhhhhh
Q 011989 118 LNSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILIN 197 (473)
Q Consensus 118 ~~~~~~~~~~~~~~la~~aa~~Al~dAgl~~~~~~~~~~~gvivg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (473)
+++++.++|++++++++.++++||+|||++..+. +..++||++|++.+.+...+.+++.+.++++..++|+.++..+.|
T Consensus 63 ~~~~~~~~~d~~~~~~l~a~~~Al~dAGl~~~~~-~~~r~Gv~vGt~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n 141 (414)
T PRK08722 63 MSKKDARKMDLFIQYGIAAGIQALDDSGLEVTEE-NAHRIGVAIGSGIGGLGLIEAGHQALVEKGPRKVSPFFVPSTIVN 141 (414)
T ss_pred CCHHHHhhcCHHHHHHHHHHHHHHHHcCCCcccc-CCCCEEEEEeeCCCcchhHHHHHHHHHhcCcccCCchhccccccc
Confidence 9999999999999999999999999999976544 478999999999999988888888787777788999999999999
Q ss_pred HHHHHHHHhcCCCCCeeeecCCcchHHHHHHHHHHHHHcCCCCEEEEeecCCCcChHHHHHHhhhhccccccCCCCCCCC
Q 011989 198 MASGHVSMKYGFQGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEAS 277 (473)
Q Consensus 198 ~~a~~ia~~lgl~Gp~~~v~~acasg~~Al~~A~~~I~~G~~d~vlv~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (473)
.++++|++.||++||+++++++|+|++.||.+|+++|++|++|++||+|+|...++..+..|..++.++.. +..|+..|
T Consensus 142 ~~a~~is~~~gl~Gp~~ti~~aCas~~~Al~~A~~~i~~G~~d~~lvgg~d~~~~~~~~~~f~~~~~ls~~-~~~p~~~~ 220 (414)
T PRK08722 142 MIAGNLSIMRGLRGPNIAISTACTTGLHNIGHAARMIAYGDADAMVAGGAEKASTPLGMAGFGAAKALSTR-NDEPQKAS 220 (414)
T ss_pred HHHHHHHHHhCCCCCccccccccHHHHHHHHHHHHHHHcCCCCEEEEecccccCCHHHHHHHHHcCCcccC-CCCCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999988643 34577899
Q ss_pred cCccCCCCceeeccceEEEEEccchHHHhcCCeEEEEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccE
Q 011989 278 RPFDCGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDY 357 (473)
Q Consensus 278 ~pfd~~~~G~~~geGaaavvL~~~~~A~~~g~~~~a~i~g~~~~~d~~~~~~~~~~~~~~~~a~~~al~~agl~~~dId~ 357 (473)
||||.+++|+++|||++++||++++.|+++|.++|++|.|++.++|+.+++.|++.+.+..++++++|+++|++|+||||
T Consensus 221 rpfd~~~~G~~~gEGaaalvLe~~~~A~~~g~~i~a~i~g~~~~~d~~~~~~p~~~~~~~~~a~~~Al~~agi~~~did~ 300 (414)
T PRK08722 221 RPWDKDRDGFVLGDGAGMMVLEEYEHAKARGAKIYAELVGFGMSGDAYHMTSPSEDGSGGALAMEAAMRDAGVTGEQIGY 300 (414)
T ss_pred CcCcCCCCceEeeceEEEEEEccHHHHHHCCCeEEEEEEEEEEcCCCCCCCCCCcchHHHHHHHHHHHHHcCCCHHHcCE
Confidence 99999999999999999999999999999999999999999999999999999888888899999999999999999999
Q ss_pred EEEcCCCCCCCCHHHHHHHHHHhhcccCCCCceeeccccchhhhHHhHHHHHHHHHHHHHHhCccCCCCCCCCCCCCCCC
Q 011989 358 VNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLAIHHGVAPLTLNLAKPDPIFND 437 (473)
Q Consensus 358 v~~hgtgt~~~D~~E~~a~~~~~~~~~~~~~~~v~s~k~~~Gh~~~AsG~~~li~~~~~l~~~~ipp~~~~~~~~~~~~~ 437 (473)
||+|||||+.+|.+|..+|+++|+... ..+++|+++|+++||+++|+|++++++++++|++++|||++|+++|+|.+++
T Consensus 301 ie~hgtgt~~~D~~E~~al~~~fg~~~-~~~~~v~s~K~~~GH~~~AaG~~~~~~~~l~l~~~~ipp~~n~~~~~~~~~~ 379 (414)
T PRK08722 301 VNAHGTSTPAGDVAEIKGIKRALGEAG-SKQVLVSSTKSMTGHLLGAAGSVEAIITVMSLVDQIVPPTINLDDPEEGLDI 379 (414)
T ss_pred EEccCccCCCCCHHHHHHHHHHhcccC-CCCceeeCcccccccchHHHHHHHHHHHHHHHhcCccCCCCCCCCCCCCCCc
Confidence 999999999999999999999998542 2368999999999999999999999999999999999999999999999999
Q ss_pred CCCccccCCC-CCCcEEEEeccccccceeeEEEeec
Q 011989 438 NFMPLTASKD-MPISAALSNSFGFGGTNASLLFTKC 472 (473)
Q Consensus 438 ~~~~~~~~~~-~~~~~~l~~s~g~gG~~~~~vl~~~ 472 (473)
++++ .+.+. .+++++++|||||||+|+|+||++.
T Consensus 380 ~~v~-~~~~~~~~~~~~l~nsfGfGG~n~~lvl~~~ 414 (414)
T PRK08722 380 DLVP-HTARKVESMEYAICNSFGFGGTNGSLIFKKM 414 (414)
T ss_pred ccCC-CccccCCCCCEEEEecccCCCceEEEEEecC
Confidence 9988 44444 3689999999999999999999873
|
|
| >PLN02787 3-oxoacyl-[acyl-carrier-protein] synthase II | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-78 Score=618.71 Aligned_cols=412 Identities=43% Similarity=0.701 Sum_probs=373.0
Q ss_pred CCCCceEEEecceecccCCCHHHHHHHHHcCCCceeeCCccccccCCCCccccccccCCcccceeEEecCCCCCCCCCcc
Q 011989 36 SPLRRVVVTGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSKVAAVVPCGISSGEFNED 115 (473)
Q Consensus 36 ~~~~~v~ItG~g~~~p~g~~~~~~~~~l~~G~s~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~~ 115 (473)
+..++|||||||+++|+|.++++||++|++|+++|++++.++ ...++.++++.+++ |+.+
T Consensus 126 ~~~~rVvITG~G~vtp~G~~~~~~w~~L~~G~s~i~~~~~f~--------------~~~~~~~~ag~i~~------f~~~ 185 (540)
T PLN02787 126 TKQRRVVVTGMGVVSPLGHDPDVFYNNLLEGVSGISEIERFD--------------CSQFPTRIAGEIKS------FSTD 185 (540)
T ss_pred CCCCCEEEEeeEEECCCCCCHHHHHHHHHcCCCcccccCccc--------------hhhCCccccccccc------cChh
Confidence 345799999999999999999999999999999999987654 23455566777765 8888
Q ss_pred cCCCchhhhccCHHHHHHHHHHHHHHHHcCCCCC---CCCCCCceeEEEecCCCChhhHHHHHHHHHHhccccCCCcchh
Q 011989 116 SWLNSKDHRSIARFIAYALCAADEALHDAKWLPS---DQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIP 192 (473)
Q Consensus 116 ~~~~~~~~~~~~~~~~la~~aa~~Al~dAgl~~~---~~~~~~~~gvivg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (473)
.|++++..++|++.+++++.++++||+|||++++ .+ ++.++||++|++.+....+.++++.+. .....++|+.++
T Consensus 186 ~~l~~k~~r~md~~~~~al~Aa~eAL~dAGl~~~~~~~~-~~~r~GV~vGt~~g~~~~~~~~~~~l~-~~~~~~~p~~~~ 263 (540)
T PLN02787 186 GWVAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMKEL-DKTKCGVLIGSAMGGMKVFNDAIEALR-ISYRKMNPFCVP 263 (540)
T ss_pred hcCCHHHHHhCCHHHHHHHHHHHHHHHHcCCCccccccc-CCCceEEEEEeccchHHHHHHHHHHHh-hccccCCcchhh
Confidence 8889999999999999999999999999999753 23 478999999999998877777666553 455678888888
Q ss_pred hhhhhHHHHHHHHhcCCCCCeeeecCCcchHHHHHHHHHHHHHcCCCCEEEEeecCCCcChHHHHHHhhhhccccccCCC
Q 011989 193 RILINMASGHVSMKYGFQGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGT 272 (473)
Q Consensus 193 ~~~~~~~a~~ia~~lgl~Gp~~~v~~acasg~~Al~~A~~~I~~G~~d~vlv~g~d~~~~~~~~~~~~~~~~~~~~~~~~ 272 (473)
..+.+..+++|+..||++||+++|+++|+|++.||.+|+++|++|++|++||+|+|..+.+..+..|..++.++.+ +..
T Consensus 264 ~~~~n~~a~~ia~~~gl~Gp~~tistACASs~~Ai~~A~~~Ir~G~aD~aLvGG~d~~l~p~~~~~f~~~~aLS~~-~~~ 342 (540)
T PLN02787 264 FATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHIIRGEADVMLCGGSDAAIIPIGLGGFVACRALSQR-NDD 342 (540)
T ss_pred hhcccHHHHHHHHHhCCCCCccccccccccHHHHHHHHHHHHHcCCCCEEEEeccccccCHHHHHHHHHHHHhhcc-CCC
Confidence 8888999999999999999999999999999999999999999999999999999998999999999999998864 455
Q ss_pred CCCCCcCccCCCCceeeccceEEEEEccchHHHhcCCeEEEEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHHcCCCC
Q 011989 273 PQEASRPFDCGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQS 352 (473)
Q Consensus 273 ~~~~~~pfd~~~~G~~~geGaaavvL~~~~~A~~~g~~~~a~i~g~~~~~d~~~~~~~~~~~~~~~~a~~~al~~agl~~ 352 (473)
|+..|+|||.+++|+++|||++++|||++++|+++|++||++|.|++.++|++|++.|++.+.++.++|++||+++|++|
T Consensus 343 p~~~~rPFD~~rdGfv~GEGAa~lVLE~~e~A~~rGa~IyA~I~G~g~s~Da~~~t~p~p~g~g~~~am~~AL~~AGl~p 422 (540)
T PLN02787 343 PTKASRPWDMNRDGFVMGEGAGVLLLEELEHAKKRGANIYAEFLGGSFTCDAYHMTEPHPEGAGVILCIEKALAQSGVSK 422 (540)
T ss_pred cccccCCcccCCCCcccccceEEEEEeeHHHHHHCCCeeEEEEEEEEEecCCCCCCCCCcCHHHHHHHHHHHHHHcCCCH
Confidence 77899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccEEEEcCCCCCCCCHHHHHHHHHHhhcccCCCCceeeccccchhhhHHhHHHHHHHHHHHHHHhCccCCCCCCCCCC
Q 011989 353 HQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLAIHHGVAPLTLNLAKPD 432 (473)
Q Consensus 353 ~dId~v~~hgtgt~~~D~~E~~a~~~~~~~~~~~~~~~v~s~k~~~Gh~~~AsG~~~li~~~~~l~~~~ipp~~~~~~~~ 432 (473)
+|||||++|||||+.+|..|..+|.++|+.. .+++|+++|+++||+++|+|++++++++++|++++|||++|+++|+
T Consensus 423 ~dIdyInaHGTGT~~gD~~E~~Ai~~~Fg~~---~~~pV~S~Ks~iGH~~gAAGa~eli~~~lal~~g~iPPt~n~~~pd 499 (540)
T PLN02787 423 EDVNYINAHATSTKAGDLKEYQALMRCFGQN---PELRVNSTKSMIGHLLGAAGAVEAIATVQAIRTGWVHPNINLENPE 499 (540)
T ss_pred HHCcEEEccCccCCCCCHHHHHHHHHHhCCC---CCceeeCCCCCcCCCcccchHHHHHHHHHHHhcCCcCCCCCCCCCC
Confidence 9999999999999999999999999999853 3589999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCccccCCCCCCcEEEEeccccccceeeEEEeecC
Q 011989 433 PIFNDNFMPLTASKDMPISAALSNSFGFGGTNASLLFTKCQ 473 (473)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~~l~~s~g~gG~~~~~vl~~~~ 473 (473)
|.++++++....++..+++++|+|||||||+|+++||++|+
T Consensus 500 ~~~~~~~~v~~~~~~~~ir~aL~nSfGFGG~Naslvl~~~~ 540 (540)
T PLN02787 500 SGVDTKVLVGPKKERLDIKVALSNSFGFGGHNSSILFAPYK 540 (540)
T ss_pred ccCCcccccccccccCCcCEEEEeeecCCceeEEEEEEeCC
Confidence 99998875424455567899999999999999999999984
|
|
| >COG0304 FabB 3-oxoacyl-(acyl-carrier-protein) synthase [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-77 Score=591.15 Aligned_cols=410 Identities=51% Similarity=0.828 Sum_probs=375.6
Q ss_pred CCCceEEEecceecccCCCHHHHHHHHHcCCCceeeCCccccccCCCCccccccccCCcccceeEEecCCCCCCCCCccc
Q 011989 37 PLRRVVVTGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSKVAAVVPCGISSGEFNEDS 116 (473)
Q Consensus 37 ~~~~v~ItG~g~~~p~g~~~~~~~~~l~~G~s~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~~~ 116 (473)
++++|||||+|+++|+|.+.+++|++|..|++++++++.++ ...++.++.+.+++ | +.
T Consensus 1 ~~~rvviTG~g~vs~lG~~~~~~~~~l~~g~sgi~~~~~~~--------------~~~~~~~~~~~i~~------~--~~ 58 (412)
T COG0304 1 SMRRVVITGLGIVSSLGNGVEEVWAALLAGKSGIRPITRFD--------------ASGLGVKIAGEIKD------L--DD 58 (412)
T ss_pred CCceEEEecceeeecccCCHHHHHHHHhcCCCCCCcccccc--------------ccCCCCcccccccc------c--cc
Confidence 36899999999999999999999999999999999998876 34555666677765 4 44
Q ss_pred CCCchhhhccCHHHHHHHHHHHHHHHHcCCCCCCCCCCCceeEEEecCCCChhhHHHHHHHHHHhcccc-CCCcchhhhh
Q 011989 117 WLNSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRR-LSPFFIPRIL 195 (473)
Q Consensus 117 ~~~~~~~~~~~~~~~la~~aa~~Al~dAgl~~~~~~~~~~~gvivg~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 195 (473)
++.+++.++|+++++|++.|+.+||+|||++.....++ |+++++|++.+++...+.....+.+++.++ ++|+.++..+
T Consensus 59 ~~~~~~~~~~d~~~~~a~~Aa~eAl~dAgl~~~~~~~~-r~gv~iGsg~gg~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 137 (412)
T COG0304 59 QIAKKERRFMDRFSQLAVVAAVEALEDAGLDNELNVDM-RVGVAIGSGIGGLEDIEFDLDALLLEGLRKRISPFLVPKML 137 (412)
T ss_pred ccchHHhhcccHHHHHHHHHHHHHHHHcCCCcccccCc-cEEEEEeccCCCcchhhhHHHHHHhcCCccCcCchhhhhhc
Confidence 46677778999999999999999999999983322223 999999999999998876555555555555 8999999999
Q ss_pred hhHHHHHHHHhcCCCCCeeeecCCcchHHHHHHHHHHHHHcCCCCEEEEeecCCCcChHHHHHHhhhhccccccCCCCCC
Q 011989 196 INMASGHVSMKYGFQGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQE 275 (473)
Q Consensus 196 ~~~~a~~ia~~lgl~Gp~~~v~~acasg~~Al~~A~~~I~~G~~d~vlv~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (473)
.+..++.++..||++||++++.++|+++..||..|+++|+.|++|++|++|+|..+++..+..|..++++++. +++|..
T Consensus 138 ~~~~a~~vs~~~g~~G~~~~~~tACatg~~AIg~A~~~I~~G~ad~~iaGG~e~~i~~~~i~gF~am~Alst~-nd~p~~ 216 (412)
T COG0304 138 PNLAAGNVAIVFGLKGPNYTPVTACATGAHAIGDAVRLIRLGKADVVIAGGAEAAITPLGIAGFEAMRALSTR-NDDPEK 216 (412)
T ss_pred cchHHHHHHHHhCCCCCcCChhhhHHhHHHHHHHHHHHHHcCCCCEEEEcccccccCHHHHHHHHHHHHhccC-CCCccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999988 788999
Q ss_pred CCcCccCCCCceeeccceEEEEEccchHHHhcCCeEEEEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCc
Q 011989 276 ASRPFDCGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQV 355 (473)
Q Consensus 276 ~~~pfd~~~~G~~~geGaaavvL~~~~~A~~~g~~~~a~i~g~~~~~d~~~~~~~~~~~~~~~~a~~~al~~agl~~~dI 355 (473)
.|||||++++||++|||++++|||+.++|++||++||++|.|++.++|++|++.|.+.+.+..++|++||+++|++++||
T Consensus 217 asrPfd~~RdGfv~gEGag~lVLE~~ehA~aRGA~Iyaei~G~g~~~Da~h~t~P~p~g~Ga~~am~~AL~~Agl~~~~i 296 (412)
T COG0304 217 ASRPFDKNRDGFVIGEGAGALVLEELEHALARGAKIYAEIVGYGTTSDAYHITAPAPDGEGAIRAMRAALADAGLTPEDI 296 (412)
T ss_pred cCCCCCCCCCCEEEecceeEEEecChhhHHhCCCceEEEEEEEEecccccccCCCCCCCchHHHHHHHHHHHcCCCHhHC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEcCCCCCCCCHHHHHHHHHHhhcccCCCCceeeccccchhhhHHhHHHHHHHHHHHHHHhCccCCCCCCCCCCCC-
Q 011989 356 DYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLAIHHGVAPLTLNLAKPDPI- 434 (473)
Q Consensus 356 d~v~~hgtgt~~~D~~E~~a~~~~~~~~~~~~~~~v~s~k~~~Gh~~~AsG~~~li~~~~~l~~~~ipp~~~~~~~~~~- 434 (473)
|||+.|||||+.||..|..+++++|+... .+++|++.|+.+||++||+|..+++.++++|+++++||++|++.++|+
T Consensus 297 dYinaHgTsT~~nD~~E~~ai~~vfg~~~--~~~~vsstKs~tGH~lGAaGaveai~~~l~l~~g~ippt~n~~~~dp~~ 374 (412)
T COG0304 297 DYINAHGTSTPANDKAESLAIKRVFGEHA--KSLPVSSTKSLTGHTLGAAGAVEAIISLLALRDGIIPPTINLDNPDPEA 374 (412)
T ss_pred CEEeCCCccCCCccHHHHHHHHHHhcccc--cCceeeecccccccChhhHHHHHHHHHHHHHhcCCcCCCCCcCCCCccc
Confidence 99999999999999999999999999764 348999999999999999999999999999999999999999999997
Q ss_pred CCCCCCccccCCCCCCcEEEEeccccccceeeEEEeecC
Q 011989 435 FNDNFMPLTASKDMPISAALSNSFGFGGTNASLLFTKCQ 473 (473)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~l~~s~g~gG~~~~~vl~~~~ 473 (473)
+++++++ +..+...++++|+|||||||+|+++|+++|+
T Consensus 375 ~~l~~v~-~~~~~~~~~~~lsnsfGFGG~Na~lv~~~~~ 412 (412)
T COG0304 375 ADLDVVP-NEARTGAVRAALSNSFGFGGTNASLVFKRYQ 412 (412)
T ss_pred ccccccC-CcccccceeEEEecccccCCcceEEEEecCC
Confidence 6788998 6666566999999999999999999999985
|
|
| >PRK06333 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-76 Score=604.87 Aligned_cols=420 Identities=51% Similarity=0.849 Sum_probs=384.6
Q ss_pred CCCCceEEEecceecccCCCHHHHHHHHHcCCCceeeCCccccccCCCCccccccccCCcccceeEEecCCC--CCCCCC
Q 011989 36 SPLRRVVVTGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSKVAAVVPCGI--SSGEFN 113 (473)
Q Consensus 36 ~~~~~v~ItG~g~~~p~g~~~~~~~~~l~~G~s~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~fd 113 (473)
|+|++|+|||+|+++|.|.++++||++|++|++++++++.++| ..++.++++++++.. ....||
T Consensus 1 m~~~~V~ItG~g~~~p~g~~~~~~w~~l~~G~s~i~~~~~~~~--------------~~~~~~~~g~i~~~~~~~~~~fd 66 (424)
T PRK06333 1 MNKKRIVVTGMGAVSPLGCGVETFWQRLLAGQSGIRTLTDFPV--------------GDLATKIGGQVPDLAEDAEAGFD 66 (424)
T ss_pred CCCCCEEEEcceEECCCCCCHHHHHHHHHcCCCeEEeCCcccc--------------cCCCCceEEEeccccccccccCC
Confidence 4468999999999999999999999999999999999998763 345566788886410 012388
Q ss_pred cccCCCchhhhccCHHHHHHHHHHHHHHHHcCCCCCCCCCCCceeEEEecCCCChhhHHHHHHHHHHhccccCCCcchhh
Q 011989 114 EDSWLNSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPR 193 (473)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~la~~aa~~Al~dAgl~~~~~~~~~~~gvivg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (473)
++.|+++++.++|+++++|++.++++||+|||+++.++.+.+++||++|++.+.+..+.++.+.+...+...++|+.++.
T Consensus 67 ~~~~i~~~~~~~~d~~~~l~~~aa~~Al~dAgl~~~~~~~~~~~Gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (424)
T PRK06333 67 PDRYLDPKDQRKMDRFILFAMAAAKEALAQAGWDPDTLEDRERTATIIGSGVGGFPAIAEAVRTLDSRGPRRLSPFTIPS 146 (424)
T ss_pred hhHcCCHHHHhhcCHHHHHHHHHHHHHHHhcCCCccccCCcccEEEEEecCcccHHHHHHHHHHHHhcCCcccChhHHhh
Confidence 88889999999999999999999999999999987766457899999999999988888888877777888889999999
Q ss_pred hhhhHHHHHHHHhcCCCCCeeeecCCcchHHHHHHHHHHHHHcCCCCEEEEeecCCCcChHHHHHHhhhhccccccCCCC
Q 011989 194 ILINMASGHVSMKYGFQGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTP 273 (473)
Q Consensus 194 ~~~~~~a~~ia~~lgl~Gp~~~v~~acasg~~Al~~A~~~I~~G~~d~vlv~g~d~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (473)
.+.|.++++|++.||++||+++++++|+|++.||.+|+++|++|++|++||+|+|.++++..+..|...+.++..+...+
T Consensus 147 ~~~~~~a~~is~~~gl~Gp~~~v~~aCaSg~~Al~~A~~~I~~G~~d~alvgG~e~~~~~~~~~~f~~~~~l~~~~~~~p 226 (424)
T PRK06333 147 FLTNMAAGHVSIRYGFKGPLGAPVTACAAGVQAIGDAARLIRSGEADVAVCGGTEAAIDRVSLAGFAAARALSTRFNDAP 226 (424)
T ss_pred hhhhHHHHHHHHHhCCCCCCccccchhHHHHHHHHHHHHHHHcCCCCEEEEeeecccCCHHHHHHHHHcccccccCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999889988888988888887667778
Q ss_pred CCCCcCccCCCCceeeccceEEEEEccchHHHhcCCeEEEEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHHcCCCCC
Q 011989 274 QEASRPFDCGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSH 353 (473)
Q Consensus 274 ~~~~~pfd~~~~G~~~geGaaavvL~~~~~A~~~g~~~~a~i~g~~~~~d~~~~~~~~~~~~~~~~a~~~al~~agl~~~ 353 (473)
+..|+|||.+++|+++|||+++|||+++++|+++|.++|++|.|++.++|+.+.+.|.+.+.++.+++++||+++|++|+
T Consensus 227 ~~~~~Pfd~~~~G~~~gEGaa~lvLe~~~~A~~rg~~i~a~i~G~~~~~d~~~~~~~~~~~~~~~~a~~~Al~~Agi~p~ 306 (424)
T PRK06333 227 EQASRPFDRDRDGFVMGEGAGILVIETLEHALARGAPPLAELVGYGTSADAYHMTAGPEDGEGARRAMLIALRQAGIPPE 306 (424)
T ss_pred CcCCCCCCCCCCCeEEecceEEEEEeeHHHHHHCCCeEEEEEEEEEEcCCCCCCCCCCCCcHHHHHHHHHHHHHcCCCHH
Confidence 88999999999999999999999999999999999999999999999999999888888888999999999999999999
Q ss_pred CccEEEEcCCCCCCCCHHHHHHHHHHhhcccCCCCceeeccccchhhhHHhHHHHHHHHHHHHHHhCccCCCCCCCCCCC
Q 011989 354 QVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLAIHHGVAPLTLNLAKPDP 433 (473)
Q Consensus 354 dId~v~~hgtgt~~~D~~E~~a~~~~~~~~~~~~~~~v~s~k~~~Gh~~~AsG~~~li~~~~~l~~~~ipp~~~~~~~~~ 433 (473)
||||||+|||||+.+|..|..+++++|+.. .++++++.|+++||+++|+|++++++++++|++++|||++|+++|+|
T Consensus 307 dId~i~~hgtgt~~~D~~E~~al~~~fg~~---~~~~v~s~K~~~GH~~gAaG~~~~~~~~l~l~~g~ipp~~~~~~~~~ 383 (424)
T PRK06333 307 EVQHLNAHATSTPVGDLGEVAAIKKVFGHV---SGLAVSSTKSATGHLLGAAGGVEAIFTILALRDQIAPPTLNLENPDP 383 (424)
T ss_pred HCCEEeccCCCCccchHHHHHHHHHHhCCC---CCceeECcccchhhhHHHHHHHHHHHHHHHHhcCCcCCCCCCCCCCC
Confidence 999999999999999999999999999843 46899999999999999999999999999999999999999999999
Q ss_pred CCC-CCCCccccCCCCCCcEEEEeccccccceeeEEEeecC
Q 011989 434 IFN-DNFMPLTASKDMPISAALSNSFGFGGTNASLLFTKCQ 473 (473)
Q Consensus 434 ~~~-~~~~~~~~~~~~~~~~~l~~s~g~gG~~~~~vl~~~~ 473 (473)
.++ +++++ ...+.++.+++++|||||||+|+|+||++|+
T Consensus 384 ~~~~~~~~~-~~~~~~~~~~al~~s~gfGG~n~~~il~~~~ 423 (424)
T PRK06333 384 AAEGLDVVA-NKARPMDMDYALSNGFGFGGVNASILFRRWE 423 (424)
T ss_pred Ccccccccc-CCCcccCcCEEEEeeecCCCeeEEEEEeccC
Confidence 998 77777 6677788999999999999999999999984
|
|
| >PLN02836 3-oxoacyl-[acyl-carrier-protein] synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-76 Score=600.97 Aligned_cols=433 Identities=80% Similarity=1.254 Sum_probs=385.0
Q ss_pred CCCceEEEecceecccCCCHHHHHHHHHcCCCceeeCCccccccCCCCccccccccCCcccceeEEecCCCCCCCCCccc
Q 011989 37 PLRRVVVTGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSKVAAVVPCGISSGEFNEDS 116 (473)
Q Consensus 37 ~~~~v~ItG~g~~~p~g~~~~~~~~~l~~G~s~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~~~ 116 (473)
..++|||||||+++|+|.++++||++|++|+++|++++.++|....|+.++.......++.++++.++......+||+.+
T Consensus 4 ~~~~VvItG~g~~~p~g~~~~~~w~~L~~G~s~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~~~ 83 (437)
T PLN02836 4 PTRRVVVTGLGLVTPLGCGVETTWRRLIAGECGVRALTQDDLKMKSEDEETQLYTLDQLPSRVAALVPRGTGPGDFDEEL 83 (437)
T ss_pred CCCCEEEEeeeEECCCCCCHHHHHHHHHcCCCccccCChhhhccccccccccccccccCCccEEEEeccccccccCChHH
Confidence 35789999999999999999999999999999999999988765555433332334567778888886433345688877
Q ss_pred CCCchhhhccCHHHHHHHHHHHHHHHHcCCCCCCCCCCCceeEEEecCCCChhhHHHHHHHHHHhccccCCCcchhhhhh
Q 011989 117 WLNSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILI 196 (473)
Q Consensus 117 ~~~~~~~~~~~~~~~la~~aa~~Al~dAgl~~~~~~~~~~~gvivg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (473)
|+. .+++++..+|++.|+++||+|||+.+....+.+++||++|++.+.......+...+.+++.+.++|+.++..+.
T Consensus 84 ~~~---~~~~~~~~~~~~~aa~~Al~dAg~~~~~~~~~~~~Gv~~Gt~~g~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 160 (437)
T PLN02836 84 WLN---SRSSSRFIGYALCAADEALSDARWLPSEDEAKERTGVSIGGGIGSITDILEAAQLICEKRLRRLSPFFVPRILI 160 (437)
T ss_pred hcc---ccccCHHHHHHHHHHHHHHHHcCCCcccccCCcCEEEEEeeccCcHHHHHHHHHHHHhcCCCCCChhhhhhhcc
Confidence 743 35789999999999999999999976433346899999999998888877777777777777899999999999
Q ss_pred hHHHHHHHHhcCCCCCeeeecCCcchHHHHHHHHHHHHHcCCCCEEEEeecCCCcChHHHHHHhhhhccccccCCCCCCC
Q 011989 197 NMASGHVSMKYGFQGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEA 276 (473)
Q Consensus 197 ~~~a~~ia~~lgl~Gp~~~v~~acasg~~Al~~A~~~I~~G~~d~vlv~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (473)
|.++++|+..||++||+++|+++|+|++.||.+|+++|++|++|++||+|+|...++..+..|...+.++..+...++..
T Consensus 161 n~~a~~is~~~gl~Gp~~tv~~acaSg~~Al~~A~~~I~~G~~d~~lvgg~~~~~~~~~~~~~~~~~~l~~~~~~~p~~~ 240 (437)
T PLN02836 161 NMAAGHVSIRYGFQGPNHAAVTACATGAHSIGDAFRMIQFGDADVMVAGGTESSIDALSIAGFSRSRALSTKFNSCPTEA 240 (437)
T ss_pred cHHHHHHHHHhCCCCceeceeChhHHHHHHHHHHHHHHHcCCCCEEEEccccccCCHHHHHHHHHhhhhhcccCCCcccc
Confidence 99999999999999999999999999999999999999999999999999999889988888988888876656667789
Q ss_pred CcCccCCCCceeeccceEEEEEccchHHHhcCCeEEEEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCcc
Q 011989 277 SRPFDCGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVD 356 (473)
Q Consensus 277 ~~pfd~~~~G~~~geGaaavvL~~~~~A~~~g~~~~a~i~g~~~~~d~~~~~~~~~~~~~~~~a~~~al~~agl~~~dId 356 (473)
|+|||.+++|+++|||++++||+++++|+++|+++|++|.|++.++|+.+++.|+...++..+++++||+++||+++|||
T Consensus 241 ~~pfd~~~~G~~~gEGaaalVLe~~~~A~~~g~~i~a~I~g~~~~~d~~~~~~p~~~~~~~~~a~~~Al~~Agi~~~dId 320 (437)
T PLN02836 241 SRPFDCDRDGFVIGEGAGVLVLEELEHAKRRGAKIYAEVRGYGMSGDAHHITQPHEDGRGAVLAMTRALQQSGLHPNQVD 320 (437)
T ss_pred cCCcccCCCCeeeecCEEEEEEeeHHHHHHCCCceEEEEEeeeecCCCCCCcCCCcchHHHHHHHHHHHHHcCCCHhHcC
Confidence 99999999999999999999999999999999999999999999999999998888888889999999999999999999
Q ss_pred EEEEcCCCCCCCCHHHHHHHHHHhhcccCCCCceeeccccchhhhHHhHHHHHHHHHHHHHHhCccCCCCCCCCCCCCCC
Q 011989 357 YVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLAIHHGVAPLTLNLAKPDPIFN 436 (473)
Q Consensus 357 ~v~~hgtgt~~~D~~E~~a~~~~~~~~~~~~~~~v~s~k~~~Gh~~~AsG~~~li~~~~~l~~~~ipp~~~~~~~~~~~~ 436 (473)
||++|||||+.+|..|..+++++|+.....+.++++++|+++||+++|+|++++++++++|++++|||++|+++|+|.++
T Consensus 321 ~ve~hgtgt~~~D~~E~~ai~~~~~~~~~~~~~~v~s~K~~~GH~~~AsG~~~li~~~l~l~~~~ipp~~n~~~~~p~~~ 400 (437)
T PLN02836 321 YVNAHATSTPLGDAVEARAIKTVFSEHATSGGLAFSSTKGATGHLLGAAGAVEAIFSVLAIHHGIAPPTLNLERPDPIFD 400 (437)
T ss_pred EEEccCCcCcCcCHHHHHHHHHHhcccccCCCCeeECCcccccccHHHHHHHHHHHHHHHHhcCccCCCCCCCCCCCCCC
Confidence 99999999999999999999999987544457899999999999999999999999999999999999999999999999
Q ss_pred CCCCccccCCCCCCcEEEEeccccccceeeEEEeec
Q 011989 437 DNFMPLTASKDMPISAALSNSFGFGGTNASLLFTKC 472 (473)
Q Consensus 437 ~~~~~~~~~~~~~~~~~l~~s~g~gG~~~~~vl~~~ 472 (473)
+++++....+..+++.+|+|||||||+|+|+||++.
T Consensus 401 ~~~~~~~~~~~~~~~~~l~nsfgfGG~na~lvl~~~ 436 (437)
T PLN02836 401 DGFVPLTASKAMLIRAALSNSFGFGGTNASLLFTSP 436 (437)
T ss_pred cccCcccCCCCCCccEEEEecccCCCeeEEEEEecC
Confidence 998874444566789999999999999999999975
|
|
| >PRK07967 3-oxoacyl-(acyl carrier protein) synthase I; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-75 Score=583.51 Aligned_cols=402 Identities=39% Similarity=0.614 Sum_probs=359.0
Q ss_pred CceEEEecceecccCCCHHHHHHHHHcCCCceeeCCccccccCCCCccccccccCCcccceeEEecCCCCCCCCCcccCC
Q 011989 39 RRVVVTGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSKVAAVVPCGISSGEFNEDSWL 118 (473)
Q Consensus 39 ~~v~ItG~g~~~p~g~~~~~~~~~l~~G~s~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~~~~~ 118 (473)
++|||||||+++|.|.++++||++|++|+++|++++.++ ...++.++++.++ |+++.++
T Consensus 2 ~rVvITG~G~vsp~G~~~~~~w~~l~~G~sgi~~~~~~~--------------~~~~~~~~~g~~~-------~~~~~~~ 60 (406)
T PRK07967 2 RRVVITGLGIVSSIGNNQQEVLASLREGRSGITFSPEFA--------------EMGMRSQVWGNVK-------LDPTGLI 60 (406)
T ss_pred CcEEEEcceEECCCCCCHHHHHHHHHcCCCceeECCccc--------------ccCCCCceEEEcC-------CChhhcC
Confidence 799999999999999999999999999999999988755 3456667777763 7777777
Q ss_pred CchhhhccCHHHHHHHHHHHHHHHHcCCCCCCCCCCCceeEEEecCCCChhhHHHHHHHHHH-hccccCCCcchhhhhhh
Q 011989 119 NSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICE-KRLRRLSPFFIPRILIN 197 (473)
Q Consensus 119 ~~~~~~~~~~~~~la~~aa~~Al~dAgl~~~~~~~~~~~gvivg~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 197 (473)
+++..+++++..++++.|+++||+|||+.+.+. +.+++||++|++.+........+..+.. .+.+.++|+.++..+.+
T Consensus 61 ~~~~~~~~~r~~~~a~~aa~~Al~dAGl~~~~~-~~~rvGv~~gs~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 139 (406)
T PRK07967 61 DRKVMRFMGDASAYAYLAMEQAIADAGLSEEQV-SNPRTGLIAGSGGGSTRNQVEAADAMRGPRGPKRVGPYAVTKAMAS 139 (406)
T ss_pred CHHHhhcCCHHHHHHHHHHHHHHHHcCCCCccC-CCCCEEEEEecCCccHHHHHHHHHHHHhccCcccCCchhhcccccc
Confidence 788889999999999999999999999976655 4679999999998887666555555444 56677899999999999
Q ss_pred HHHHHHHHhcCCCCCeeeecCCcchHHHHHHHHHHHHHcCCCCEEEEeecCCCcChHHHHHHhhhhccccccCCCCCCCC
Q 011989 198 MASGHVSMKYGFQGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEAS 277 (473)
Q Consensus 198 ~~a~~ia~~lgl~Gp~~~v~~acasg~~Al~~A~~~I~~G~~d~vlv~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (473)
.++++|+..||++||+++++++|+|++.||..|+++|+.|++|++||+|+|.. .+.....|..++.++..++..|+..|
T Consensus 140 ~~a~~is~~~~l~Gp~~tvs~aCas~~~Ai~~A~~~ir~G~~d~~lvgg~d~~-~~~~~~~f~~~~~ls~~~~~~p~~~~ 218 (406)
T PRK07967 140 TVSACLATPFKIKGVNYSISSACATSAHCIGNAVEQIQLGKQDIVFAGGGEEL-DWEMSCLFDAMGALSTKYNDTPEKAS 218 (406)
T ss_pred hHHHHHHHHHCCCCCccccccHhHHHHHHHHHHHHHHHcCCCCEEEEeeeccc-ChHHHHHHHHhhhhccCCCCCCCcCC
Confidence 99999999999999999999999999999999999999999999999999974 44555668888888766566688899
Q ss_pred cCccCCCCceeeccceEEEEEccchHHHhcCCeEEEEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccE
Q 011989 278 RPFDCGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDY 357 (473)
Q Consensus 278 ~pfd~~~~G~~~geGaaavvL~~~~~A~~~g~~~~a~i~g~~~~~d~~~~~~~~~~~~~~~~a~~~al~~agl~~~dId~ 357 (473)
||||.+++|+++|||++++|||++++|+++|++||++|.|++.++|+++++.| .+.++.++|++||+.++ + ||||
T Consensus 219 rPFd~~r~G~v~gEGaa~lvLe~~~~A~~rga~i~a~i~G~g~~~d~~~~~~p--~~~~~~~a~~~Al~~~~--~-~Idy 293 (406)
T PRK07967 219 RAYDANRDGFVIAGGGGVVVVEELEHALARGAKIYAEIVGYGATSDGYDMVAP--SGEGAVRCMQMALATVD--T-PIDY 293 (406)
T ss_pred cCCcCCCCceeeeceEEEEEEeeHHHHHhCCCcEEEEEEEEEECCCCCCCCCC--CHHHHHHHHHHHHhCCC--C-CccE
Confidence 99999999999999999999999999999999999999999999999998876 57888999999998654 5 9999
Q ss_pred EEEcCCCCCCCCHHHHHHHHHHhhcccCCCCceeeccccchhhhHHhHHHHHHHHHHHHHHhCccCCCCCCCCCCCCC-C
Q 011989 358 VNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLAIHHGVAPLTLNLAKPDPIF-N 436 (473)
Q Consensus 358 v~~hgtgt~~~D~~E~~a~~~~~~~~~~~~~~~v~s~k~~~Gh~~~AsG~~~li~~~~~l~~~~ipp~~~~~~~~~~~-~ 436 (473)
|++|||||+.+|.+|..|++++|+.. .++|+++|+++||+++|+|++++++++++|++++|||++|+++++|.+ +
T Consensus 294 i~aHgtGT~~~D~~E~~Ai~~~fg~~----~~~v~s~K~~~GH~~~AaG~~e~i~~~lal~~~~iPpt~~~~~~~~~~~~ 369 (406)
T PRK07967 294 INTHGTSTPVGDVKELGAIREVFGDK----SPAISATKSLTGHSLGAAGVQEAIYSLLMMEHGFIAPSANIEELDPQAAG 369 (406)
T ss_pred EEcCCCCCCCCCHHHHHHHHHHhCCC----CCeeECcccccccCccccchHHHHHHHHHHhcCcCCCCCCCCCCCccccC
Confidence 99999999999999999999999854 479999999999999999999999999999999999999999999988 6
Q ss_pred CCCCccccCCCCCCcEEEEeccccccceeeEEEeecC
Q 011989 437 DNFMPLTASKDMPISAALSNSFGFGGTNASLLFTKCQ 473 (473)
Q Consensus 437 ~~~~~~~~~~~~~~~~~l~~s~g~gG~~~~~vl~~~~ 473 (473)
+++++ +..+..+++.+|+|||||||+|+|+||++|+
T Consensus 370 ~~~~~-~~~~~~~~~~~l~~sfgfGG~n~~lvl~~~~ 405 (406)
T PRK07967 370 MPIVT-ETTDNAELTTVMSNSFGFGGTNATLVFRRYK 405 (406)
T ss_pred CCccC-CCCcCCCCCEEEEecccCCCeeEEEEEEecC
Confidence 77777 5555567899999999999999999999984
|
|
| >PRK07910 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-74 Score=585.47 Aligned_cols=407 Identities=37% Similarity=0.572 Sum_probs=368.9
Q ss_pred CCceEEEecceecccCCCHHHHHHHHHcCCCceeeCCccccccCCCCccccccccCCcccceeEEecCCCCCCCCCcccC
Q 011989 38 LRRVVVTGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSKVAAVVPCGISSGEFNEDSW 117 (473)
Q Consensus 38 ~~~v~ItG~g~~~p~g~~~~~~~~~l~~G~s~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~~~~ 117 (473)
+++|||||||+++|.|.+.++||++|++|+++|++++.+++. ...++.++++++++ +||+ +
T Consensus 11 ~~~VvItGig~~sp~g~~~~~~w~~L~~G~s~i~~~~~~~~~------------~~~~~~~~~g~i~~-----~~d~--~ 71 (418)
T PRK07910 11 FPNVVVTGIAMTTALATDAETTWKLLLDGQSGIRTLDDPFVE------------EFDLPVRIGGHLLE-----EFDH--Q 71 (418)
T ss_pred CCCEEEEeeEEECCCCCCHHHHHHHHHcCCCeeEeCChhhhh------------ccCCCcceEEEecc-----Cccc--c
Confidence 479999999999999999999999999999999998764321 12345667787742 2554 3
Q ss_pred CCchhhhccCHHHHHHHHHHHHHHHHcCCCCCCCCCCCceeEEEecCCCChhhHHHHHHHHHHhccccCCCcchhhhhhh
Q 011989 118 LNSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILIN 197 (473)
Q Consensus 118 ~~~~~~~~~~~~~~la~~aa~~Al~dAgl~~~~~~~~~~~gvivg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (473)
+++++.++|+|++++++.++++||+|||+.. . ++.++||++|++.+.......++..+.+.+.+.++|..++.++.|
T Consensus 72 ~~~~~~~~~d~~~~~~l~aa~~AledAg~~~--~-~~~r~Gv~~G~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n 148 (418)
T PRK07910 72 LTRVELRRMSYLQRMSTVLGRRVWENAGSPE--V-DTNRLMVSIGTGLGSAEELVFAYDDMRARGLRAVSPLAVQMYMPN 148 (418)
T ss_pred CCHHHHhhccHHHHHHHHHHHHHHHHcCCCC--C-CcccEEEEEEEccCccHhHHHHHHHHHhcCcccCChhHHHHhccc
Confidence 7888899999999999999999999999842 2 478999999999999888887777777777778889889999999
Q ss_pred HHHHHHHHhcCCCCCeeeecCCcchHHHHHHHHHHHHHcCCCCEEEEeecCCCcChHHHHHHhhhhc-cccccCCCCCCC
Q 011989 198 MASGHVSMKYGFQGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRA-LTTKYNGTPQEA 276 (473)
Q Consensus 198 ~~a~~ia~~lgl~Gp~~~v~~acasg~~Al~~A~~~I~~G~~d~vlv~g~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 276 (473)
.++.+++..++++||+++++++|+|++.||.+|+++|++|++|++||+|+|..+++..+..|..++. ++.. ...++..
T Consensus 149 ~~a~~is~~~~~~G~~~ti~taCaS~~~Al~~A~~~I~~G~~d~aivgg~~~~~~~~~~~~f~~~~~~ls~~-~~~~~~~ 227 (418)
T PRK07910 149 GPAAAVGLERHAKAGVITPVSACASGSEAIAQAWRQIVLGEADIAICGGVETRIEAVPIAGFAQMRIVMSTN-NDDPAGA 227 (418)
T ss_pred cHHHHHHHHhCCCCCcccccchhHHHHHHHHHHHHHHHcCCCCEEEEccccccCCHHHHHHHHhcCCccccC-CCCCCCC
Confidence 9999999999999999999999999999999999999999999999999999999998999999988 6532 3457789
Q ss_pred CcCccCCCCceeeccceEEEEEccchHHHhcCCeEEEEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCcc
Q 011989 277 SRPFDCGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVD 356 (473)
Q Consensus 277 ~~pfd~~~~G~~~geGaaavvL~~~~~A~~~g~~~~a~i~g~~~~~d~~~~~~~~~~~~~~~~a~~~al~~agl~~~dId 356 (473)
|+|||.+++|+++|||++++||++++.|+++|.++|++|.|++.++|+.+.+.|++.+.++.+++++||+++|++++|||
T Consensus 228 ~rPFd~~~~G~v~gEGaa~vvLe~~~~A~~rg~~i~a~i~g~~~~~dg~~~~~~~~~~~~~~~a~~~Al~~agi~~~did 307 (418)
T PRK07910 228 CRPFDKDRDGFVFGEGGALMVIETEEHAKARGANILARIMGASITSDGFHMVAPDPNGERAGHAMTRAIELAGLTPGDID 307 (418)
T ss_pred cCCCcCCCCCEeeeceEEEEEEeeHHHHHhCCCcEEEEEEEEEEecCCCCCCCCCCCHHHHHHHHHHHHHHhCCCHHHCC
Confidence 99999999999999999999999999999999999999999999999999989988888899999999999999999999
Q ss_pred EEEEcCCCCCCCCHHHHHHHHHHhhcccCCCCceeeccccchhhhHHhHHHHHHHHHHHHHHhCccCCCCCCCCCCCCCC
Q 011989 357 YVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLAIHHGVAPLTLNLAKPDPIFN 436 (473)
Q Consensus 357 ~v~~hgtgt~~~D~~E~~a~~~~~~~~~~~~~~~v~s~k~~~Gh~~~AsG~~~li~~~~~l~~~~ipp~~~~~~~~~~~~ 436 (473)
||++|||||+.+|..|..+|+++|+.. .++++++|+++||+++|+|++++++++++|++++|||++|+++|+|.++
T Consensus 308 ~ie~hgtgt~~~D~~E~~Al~~~fg~~----~~~v~s~K~~~GH~~~AaG~~~li~~~l~l~~~~ipp~~n~~~~~p~~~ 383 (418)
T PRK07910 308 HVNAHATGTSVGDVAEGKAINNALGGH----RPAVYAPKSALGHSVGAVGAVESILTVLALRDGVIPPTLNLENLDPEID 383 (418)
T ss_pred EEEcCCcCCCCCCHHHHHHHHHHhCCC----CCceeCccccccccHHHHHHHHHHHHHHHHhcCccCCCCCCCCCCCCCC
Confidence 999999999999999999999999853 3679999999999999999999999999999999999999999999999
Q ss_pred CCCCccccCCCCCCcEEEEeccccccceeeEEEeec
Q 011989 437 DNFMPLTASKDMPISAALSNSFGFGGTNASLLFTKC 472 (473)
Q Consensus 437 ~~~~~~~~~~~~~~~~~l~~s~g~gG~~~~~vl~~~ 472 (473)
+++++ .+++..+++++++|||||||+|+++||++|
T Consensus 384 l~~~~-~~~~~~~~~~al~nsfGfGG~N~slvl~~~ 418 (418)
T PRK07910 384 LDVVA-GEPRPGNYRYAINNSFGFGGHNVALAFGRY 418 (418)
T ss_pred cccCC-CCCcCCCccEEEEeeecCCCeeEEEEEecC
Confidence 99887 556666789999999999999999999986
|
|
| >PRK09116 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-74 Score=584.17 Aligned_cols=403 Identities=37% Similarity=0.568 Sum_probs=363.3
Q ss_pred CceEEEecceecccCCCHHHHHHHHHcCCCceeeCCccccccCCCCccccccccCCcccceeEEecCCCCCCCCCcccCC
Q 011989 39 RRVVVTGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSKVAAVVPCGISSGEFNEDSWL 118 (473)
Q Consensus 39 ~~v~ItG~g~~~p~g~~~~~~~~~l~~G~s~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~~~~~ 118 (473)
++|||||||+++|.|.++++||++|++|+++|++++.+++ ...++.++++.+++ |+.+.++
T Consensus 2 ~~VvITG~g~vtp~G~~~~~~~~~L~~g~s~i~~~~~~~~-------------~~~~~~~~~~~v~~------~~~~~~~ 62 (405)
T PRK09116 2 RRVVVTGMGGVTALGEDWQTIAARLKAGRNAVRRMPEWDR-------------YDGLNTRLAAPIDD------FELPAHY 62 (405)
T ss_pred CCEEEEeeEEECCCCCCHHHHHHHHHcCCCCEEeCCchhh-------------ccCCCCceEEEecC------cChhHhc
Confidence 7899999999999999999999999999999999987542 13456778888876 7777778
Q ss_pred CchhhhccCHHHHHHHHHHHHHHHHcCCCCCCCCCCCceeEEEecCCCChhhHHHHHHHHHHhccccCCCcchhhhhhhH
Q 011989 119 NSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINM 198 (473)
Q Consensus 119 ~~~~~~~~~~~~~la~~aa~~Al~dAgl~~~~~~~~~~~gvivg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (473)
+++..++|++.++|++.|+++||+|||+......+++++||++|++.+.......+...+.+.+...++|..++..++|.
T Consensus 63 ~~~~~r~~~~~~~~al~aa~~Al~dAGl~~~~~~~~~r~Gv~~Gt~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ 142 (405)
T PRK09116 63 TRKKIRSMGRVSLMATRASELALEDAGLLGDPILTDGRMGIAYGSSTGSTDPIGAFGTMLLEGSMSGITATTYVRMMPHT 142 (405)
T ss_pred CHHHHhhCCHHHHHHHHHHHHHHHHcCCCCccccCCCcEEEEEeecccchHHHHHHHHHHhhcCccccChhhhhhhcccH
Confidence 88888999999999999999999999985332224679999999999988888888777777777778888888999999
Q ss_pred HHHHHHHhcCCCCCeeeecCCcchHHHHHHHHHHHHHcCCCCEEEEeecCCCcChHHHHHHhhhhccccccCCCCCCCCc
Q 011989 199 ASGHVSMKYGFQGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASR 278 (473)
Q Consensus 199 ~a~~ia~~lgl~Gp~~~v~~acasg~~Al~~A~~~I~~G~~d~vlv~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (473)
++++|+..||++||+++++++|+|++.||..|+++|++|++|++||+|+|. .++.....|..++.++.. ...|...|+
T Consensus 143 ~a~~is~~~~~~Gp~~ti~~acas~~~Al~~A~~~I~~G~~d~~lvgg~d~-~~~~~~~~f~~l~~~~~~-~~~~~~~~r 220 (405)
T PRK09116 143 TAVNVGLFFGLKGRVIPTSSACTSGSQGIGYAYEAIKYGYQTVMLAGGAEE-LCPTEAAVFDTLFATSTR-NDAPELTPR 220 (405)
T ss_pred HHHHHHHHhCCCCCcccccchhhhHHHHHHHHHHHHHcCCCCEEEEecchh-cChHHHHHHHHhhhhccC-CCCCCCCCC
Confidence 999999999999999999999999999999999999999999999999998 566667777777766532 334667899
Q ss_pred CccCCCCceeeccceEEEEEccchHHHhcCCeEEEEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEE
Q 011989 279 PFDCGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYV 358 (473)
Q Consensus 279 pfd~~~~G~~~geGaaavvL~~~~~A~~~g~~~~a~i~g~~~~~d~~~~~~~~~~~~~~~~a~~~al~~agl~~~dId~v 358 (473)
|||.+++|+++|||++++|||++++|+++|+++|++|.|++.++|+.+++.|+ ..++.++++++|++++++|+|||||
T Consensus 221 Pfd~~~~G~v~gEGa~~~vLe~~~~A~~rga~i~a~i~g~~~~~d~~~~~~p~--~~~~~~ai~~AL~~Agi~p~dId~I 298 (405)
T PRK09116 221 PFDANRDGLVIGEGAGTLVLEELEHAKARGATIYAEIVGFGTNSDGAHVTQPQ--AETMQIAMELALKDAGLAPEDIGYV 298 (405)
T ss_pred CCcCCCCCEeeeccEEEEEEccHHHHHhCCCceEEEEEEEEEcCCCCcCCCCC--HHHHHHHHHHHHHHhCCCHHHcCEE
Confidence 99999999999999999999999999999999999999999999998887764 5677899999999999999999999
Q ss_pred EEcCCCCCCCCHHHHHHHHHHhhcccCCCCceeeccccchhhhHHhHHHHHHHHHHHHHHhCccCCCCCCCCCCCCC-CC
Q 011989 359 NAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLAIHHGVAPLTLNLAKPDPIF-ND 437 (473)
Q Consensus 359 ~~hgtgt~~~D~~E~~a~~~~~~~~~~~~~~~v~s~k~~~Gh~~~AsG~~~li~~~~~l~~~~ipp~~~~~~~~~~~-~~ 437 (473)
++|||||+.+|..|..+|+++|+. .+|++++|+++||+++|+|++++++++++|++++|||++|+++|+|+| ++
T Consensus 299 ~~Hgtgt~~~D~~E~~Ai~~~fg~-----~~pv~s~K~~~GH~~~AaG~~~~~~~~~~l~~~~ippt~~~~~~~~~~~~l 373 (405)
T PRK09116 299 NAHGTATDRGDIAESQATAAVFGA-----RMPISSLKSYFGHTLGACGALEAWMSIEMMNEGWFAPTLNLTQVDPACGAL 373 (405)
T ss_pred ECcCccCCCCCHHHHHHHHHHhCC-----CCeeECcchhhcccHHHHHHHHHHHHHHHHHcCccCCCCCCCCCCCCCccc
Confidence 999999999999999999999985 379999999999999999999999999999999999999999999999 68
Q ss_pred CCCccccCCCCCCcEEEEeccccccceeeEEEe
Q 011989 438 NFMPLTASKDMPISAALSNSFGFGGTNASLLFT 470 (473)
Q Consensus 438 ~~~~~~~~~~~~~~~~l~~s~g~gG~~~~~vl~ 470 (473)
++++ .+++..+.+++|+|||||||+|+++||+
T Consensus 374 ~~v~-~~~~~~~~~~~l~nsfGfGG~n~~lvl~ 405 (405)
T PRK09116 374 DYIM-GEAREIDTEYVMSNNFAFGGINTSLIFK 405 (405)
T ss_pred CccC-CCCccCCCCEEEEeeecCCcccEEEEEC
Confidence 9888 6677778999999999999999999985
|
|
| >PRK07314 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-74 Score=588.60 Aligned_cols=411 Identities=55% Similarity=0.908 Sum_probs=379.7
Q ss_pred CCceEEEecceecccCCCHHHHHHHHHcCCCceeeCCccccccCCCCccccccccCCcccceeEEecCCCCCCCCCcccC
Q 011989 38 LRRVVVTGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSKVAAVVPCGISSGEFNEDSW 117 (473)
Q Consensus 38 ~~~v~ItG~g~~~p~g~~~~~~~~~l~~G~s~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~~~~ 117 (473)
|++|+|||||+++|.|.++++||++|++|++++++++.++ ...++..+++.+++ ||++.|
T Consensus 1 m~~v~ItG~g~~~p~g~~~~~~w~~l~~g~~~~~~~~~~~--------------~~~~~~~~~g~i~~------f~~~~~ 60 (411)
T PRK07314 1 KRRVVVTGLGAVSPLGNDVESTWKNLLAGKSGIGPITHFD--------------TSDLAVKIAGEVKD------FNPDDY 60 (411)
T ss_pred CCcEEEEcceEECCCcCCHHHHHHHHHhCCCcEEECCccc--------------ccCCCccEEEEeCC------cChhhc
Confidence 3799999999999999999999999999999999998654 23455677888886 998888
Q ss_pred CCchhhhccCHHHHHHHHHHHHHHHHcCCCCCCCCCCCceeEEEecCCCChhhHHHHHHHHHHhccccCCCcchhhhhhh
Q 011989 118 LNSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILIN 197 (473)
Q Consensus 118 ~~~~~~~~~~~~~~la~~aa~~Al~dAgl~~~~~~~~~~~gvivg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (473)
+++++.++|+|+++|+++++++||+|||+++.++ +..++||++|++.+......+++..+.+.+...++|+.+++.+.+
T Consensus 61 ~~~~~~~~~~~~~~l~~~aa~~Al~dAGl~~~~~-~~~~~gv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (411)
T PRK07314 61 MSRKEARRMDRFIQYGIAAAKQAVEDAGLEITEE-NADRIGVIIGSGIGGLETIEEQHITLLEKGPRRVSPFFVPMAIIN 139 (411)
T ss_pred CCHHHhhcCCHHHHHHHHHHHHHHHHcCCCcccC-CcccEEEEEecCcCChHHHHHHHHHHHhcCccccChhhhhhhcch
Confidence 9999999999999999999999999999988777 488999999999999988888888888888888889888999999
Q ss_pred HHHHHHHHhcCCCCCeeeecCCcchHHHHHHHHHHHHHcCCCCEEEEeecCCCcChHHHHHHhhhhccccccCCCCCCCC
Q 011989 198 MASGHVSMKYGFQGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEAS 277 (473)
Q Consensus 198 ~~a~~ia~~lgl~Gp~~~v~~acasg~~Al~~A~~~I~~G~~d~vlv~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (473)
..+++++..||++||+++++++|+|++.||..|+++|++|++|+|||+|+|.++++..+..|...+.++.+ ...|...+
T Consensus 140 ~~a~~is~~~gl~Gp~~tv~~acaSgl~Al~~A~~~I~~G~~d~vlvgg~~~~~~~~~~~~~~~~~~ls~~-~~~p~~~~ 218 (411)
T PRK07314 140 MAAGHVSIRYGAKGPNHSIVTACATGAHAIGDAARLIAYGDADVMVAGGAEAAITPLGIAGFAAARALSTR-NDDPERAS 218 (411)
T ss_pred HHHHHHHHHhCCCCccccchhhhHHHHHHHHHHHHHHhcCCCCEEEEeeecccCCHHHHHHHHHhccccCC-CCCCCcCc
Confidence 99999999999999999999999999999999999999999999999999998899888888888888753 34466789
Q ss_pred cCccCCCCceeeccceEEEEEccchHHHhcCCeEEEEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccE
Q 011989 278 RPFDCGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDY 357 (473)
Q Consensus 278 ~pfd~~~~G~~~geGaaavvL~~~~~A~~~g~~~~a~i~g~~~~~d~~~~~~~~~~~~~~~~a~~~al~~agl~~~dId~ 357 (473)
+|||.+++|+++|||++++||++++.|+++|.++|++|.|++.++|+.+.+.|+....+..+++++||+++|++++||||
T Consensus 219 ~pfd~~~dG~~~geGAaavvL~~~~~A~~~g~~~~a~I~g~~~~~d~~~~~~~~~~~~~~~~a~~~Al~~agi~~~dId~ 298 (411)
T PRK07314 219 RPFDKDRDGFVMGEGAGILVLEELEHAKARGAKIYAEVVGYGMTGDAYHMTAPAPDGEGAARAMKLALKDAGINPEDIDY 298 (411)
T ss_pred CCCcCCCCCEeEEceEEEEEEeeHHHHHHCCCeEEEEEEEEEEcCCCCCCCCCCCCcHHHHHHHHHHHHHcCCCHHHCCE
Confidence 99999999999999999999999999999999999999999999999988888877888899999999999999999999
Q ss_pred EEEcCCCCCCCCHHHHHHHHHHhhcccCCCCceeeccccchhhhHHhHHHHHHHHHHHHHHhCccCCCCCCCCCCCCCCC
Q 011989 358 VNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLAIHHGVAPLTLNLAKPDPIFND 437 (473)
Q Consensus 358 v~~hgtgt~~~D~~E~~a~~~~~~~~~~~~~~~v~s~k~~~Gh~~~AsG~~~li~~~~~l~~~~ipp~~~~~~~~~~~~~ 437 (473)
|++|||||+.+|..|..++.++|+... .++++++.|+++||+++|+|++++++++++|++++|||++|+++|+|.+++
T Consensus 299 v~~hgtgt~~~d~~E~~al~~~~~~~~--~~~~v~s~k~~~Gh~~~AsG~~~~i~~~l~l~~~~ipp~~~~~~~~~~~~~ 376 (411)
T PRK07314 299 INAHGTSTPAGDKAETQAIKRVFGEHA--YKVAVSSTKSMTGHLLGAAGAVEAIFSVLAIRDQVIPPTINLDNPDEECDL 376 (411)
T ss_pred EEccccCCccccHHHHHHHHHHhcccC--CCCeeECccchhchhHHHHHHHHHHHHHHHHhCCCcCCCCCCCCCCCCCCc
Confidence 999999999999999999999998542 468999999999999999999999999999999999999999999999999
Q ss_pred CCCccccCCCCCCcEEEEeccccccceeeEEEeecC
Q 011989 438 NFMPLTASKDMPISAALSNSFGFGGTNASLLFTKCQ 473 (473)
Q Consensus 438 ~~~~~~~~~~~~~~~~l~~s~g~gG~~~~~vl~~~~ 473 (473)
++++ .+++..+++++++|||||||+|+|+||++|+
T Consensus 377 ~~~~-~~~~~~~~~~al~~s~gfGG~n~~~vl~~~~ 411 (411)
T PRK07314 377 DYVP-NEARERKIDYALSNSFGFGGTNASLVFKRYE 411 (411)
T ss_pred cccC-CcccCCCCCEEEEecccCCCceEEEEEecCC
Confidence 9888 5667778999999999999999999999985
|
|
| >cd00832 CLF Chain-length factor (CLF) is a factor required for polyketide chain initiation of aromatic antibiotic-producing polyketide synthases (PKSs) of filamentous bacteria | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-74 Score=581.93 Aligned_cols=399 Identities=30% Similarity=0.463 Sum_probs=363.9
Q ss_pred CceEEEecceecccCCCHHHHHHHHHcCCCceeeCCccccccCCCCccccccccCCcccceeEEecCCCCCCCCCcccCC
Q 011989 39 RRVVVTGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSKVAAVVPCGISSGEFNEDSWL 118 (473)
Q Consensus 39 ~~v~ItG~g~~~p~g~~~~~~~~~l~~G~s~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~~~~~ 118 (473)
++|||||||+++|.|.++++||++|++|+++|++++.++ ...++.++++.+++ |+.++++
T Consensus 1 ~~VvItG~G~vsp~G~~~~~~w~~L~~G~s~i~~~~~~~--------------~~~~~~~~~g~i~~------~~~~~~~ 60 (399)
T cd00832 1 RRAVVTGIGVVAPNGLGVEEYWKAVLDGRSGLGPITRFD--------------PSGYPARLAGEVPD------FDAAEHL 60 (399)
T ss_pred CCEEEEeeEEeCCCCCCHHHHHHHHHhCCCeEeeCCccc--------------cccCCCceeEEeCC------cChhhcC
Confidence 579999999999999999999999999999999886543 22345567788876 8877778
Q ss_pred CchhhhccCHHHHHHHHHHHHHHHHcCCCCCCCCCCCceeEEEecCCCChhhHHHHHHHHHHhccccCCCcchhhhhhhH
Q 011989 119 NSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINM 198 (473)
Q Consensus 119 ~~~~~~~~~~~~~la~~aa~~Al~dAgl~~~~~~~~~~~gvivg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (473)
+++..++|+++++|++.++++||+|||+++..+ +..|+||++|++.+.+......+..+...+...++|+.++..+.+.
T Consensus 61 ~~~~~~~~d~~~~~~l~aa~eAl~dAGl~~~~~-~~~r~Gv~~Gt~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (399)
T cd00832 61 PGRLLPQTDRMTRLALAAADWALADAGVDPAAL-PPYDMGVVTASAAGGFEFGQRELQKLWSKGPRHVSAYQSFAWFYAV 139 (399)
T ss_pred CHHHHhhCCHHHHHHHHHHHHHHHHcCCCcccc-CCCceEEEEccCCccHHHHHHHHHHHHhcCccccChhhhhhhhhhH
Confidence 999999999999999999999999999987655 4789999999999988877777777777777788888888888999
Q ss_pred HHHHHHHhcCCCCCeeeecCCcchHHHHHHHHHHHHHcCCCCEEEEeecCCCcChHHHHHHhhhhccccccCCCCCCCCc
Q 011989 199 ASGHVSMKYGFQGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASR 278 (473)
Q Consensus 199 ~a~~ia~~lgl~Gp~~~v~~acasg~~Al~~A~~~I~~G~~d~vlv~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (473)
++++|+..||++||+++++++|+|++.||.+|+++|++|+ |++||+|+|..+++..+..|...+.++. ...|...|+
T Consensus 140 ~a~~is~~~gl~Gp~~ti~~acaS~~~Al~~A~~~i~~G~-d~~i~gg~d~~~~p~~~~~~~~~~~ls~--~~~p~~~~r 216 (399)
T cd00832 140 NTGQISIRHGMRGPSGVVVAEQAGGLDALAQARRLVRRGT-PLVVSGGVDSALCPWGWVAQLSSGRLST--SDDPARAYL 216 (399)
T ss_pred HHHHHHHHhCCCCCcccccchhHHHHHHHHHHHHHHHcCC-CeEEEEeeccccCHHHHHHHHhccccCC--CCCCCCCcC
Confidence 9999999999999999999999999999999999999999 9999999999999999999998888864 234667999
Q ss_pred CccCCCCceeeccceEEEEEccchHHHhcCCeEEEEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEE
Q 011989 279 PFDCGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYV 358 (473)
Q Consensus 279 pfd~~~~G~~~geGaaavvL~~~~~A~~~g~~~~a~i~g~~~~~d~~~~~~~~~~~~~~~~a~~~al~~agl~~~dId~v 358 (473)
|||.+++|+++|||+++||||++++|+++|++||++|.|++.++|+.+... ...++.++|++||+++|++++|||||
T Consensus 217 PFd~~~~G~~~gEGa~~lvLe~~~~A~~rg~~i~a~i~g~~~~~d~~~~~~---~~~~~~~a~~~al~~ag~~~~~i~~v 293 (399)
T cd00832 217 PFDAAAAGYVPGEGGAILVLEDAAAARERGARVYGEIAGYAATFDPPPGSG---RPPGLARAIRLALADAGLTPEDVDVV 293 (399)
T ss_pred CCcCCCCCEeeeceEEEEEEeeHHHHHHCCCeEEEEEEeEEEcCCCCCCCC---CHHHHHHHHHHHHHHcCCCHHHccEE
Confidence 999999999999999999999999999999999999999999999887532 47788999999999999999999999
Q ss_pred EEcCCCCCCCCHHHHHHHHHHhhcccCCCCceeeccccchhhhHHhHHHHHHHHHHHHHHhCccCCCCCCCCCCCCCCCC
Q 011989 359 NAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLAIHHGVAPLTLNLAKPDPIFNDN 438 (473)
Q Consensus 359 ~~hgtgt~~~D~~E~~a~~~~~~~~~~~~~~~v~s~k~~~Gh~~~AsG~~~li~~~~~l~~~~ipp~~~~~~~~~~~~~~ 438 (473)
++|||||+.+|..|..+++++|+.. .+||++.|+++||+++|+|++++++++++|++++|||++|+++|+|.++++
T Consensus 294 ~~hgtgt~~~D~~E~~al~~~fg~~----~~pv~s~K~~~Gh~~~aaG~~~l~~~~l~l~~~~ipp~~n~~~~~p~~~l~ 369 (399)
T cd00832 294 FADAAGVPELDRAEAAALAAVFGPR----GVPVTAPKTMTGRLYAGGAPLDVATALLALRDGVIPPTVNVTDVPPAYGLD 369 (399)
T ss_pred EeccCcCCCCCHHHHHHHHHHhCCC----CCceeCCCchhcchHHHHHHHHHHHHHHHHhCCCcCCCCCCCCCCCCCCcc
Confidence 9999999999999999999999864 589999999999999999999999999999999999999999999999999
Q ss_pred CCccccCCCCCCcEEEEeccccccceeeEEE
Q 011989 439 FMPLTASKDMPISAALSNSFGFGGTNASLLF 469 (473)
Q Consensus 439 ~~~~~~~~~~~~~~~l~~s~g~gG~~~~~vl 469 (473)
+++ .+.+..+++++++|||||||+|+|+||
T Consensus 370 ~v~-~~~~~~~~~~al~nsfgfGG~na~lvl 399 (399)
T cd00832 370 LVT-GRPRPAALRTALVLARGRGGFNSALVV 399 (399)
T ss_pred cCC-CcccCCCCCEEEEeccCCCCcceEEEC
Confidence 988 566677899999999999999999986
|
CLFs have been shown to have decarboxylase activity towards malonyl-acyl carrier protein (ACP). CLFs are similar to other elongation ketosynthase domains, but their active site cysteine is replaced by a conserved glutamine. |
| >PRK08439 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-74 Score=581.77 Aligned_cols=405 Identities=45% Similarity=0.783 Sum_probs=372.6
Q ss_pred CceEEEecceecccCCCHHHHHHHHHcCCCceeeCCccccccCCCCccccccccCCcccceeEEecCCCCCCCCCcccCC
Q 011989 39 RRVVVTGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSKVAAVVPCGISSGEFNEDSWL 118 (473)
Q Consensus 39 ~~v~ItG~g~~~p~g~~~~~~~~~l~~G~s~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~~~~~ 118 (473)
++|+|||||+++|+|.++++||++|++|+++|++++.+. ...++..+++.+++ ||+..++
T Consensus 2 ~~v~ItG~g~vsp~G~~~~~~~~~L~~G~s~i~~~~~~~--------------~~~~~~~~~g~i~~------f~~~~~~ 61 (406)
T PRK08439 2 KRVVVTGIGMINSLGLNKESSFKAICNGECGIKKITLFD--------------ASDFPVQIAGEITD------FDPTEVM 61 (406)
T ss_pred CCEEEEeeEEECCCcCCHHHHHHHHHcCCCceEeCCCcc--------------ccCCCCceeEEcCC------cChhhcC
Confidence 789999999999999999999999999999999987654 23455667788776 9988889
Q ss_pred CchhhhccCHHHHHHHHHHHHHHHHcCCCCCCCCCCCceeEEEecCCCChhhHHHHHHHHHHhccccCCCcchhhhhhhH
Q 011989 119 NSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINM 198 (473)
Q Consensus 119 ~~~~~~~~~~~~~la~~aa~~Al~dAgl~~~~~~~~~~~gvivg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (473)
+++..+++++..+|++.|+++||+|||+++.++ +..++|+++|++.+.+...+.....+.+.+...++|+.++..+.|.
T Consensus 62 ~~~~~~~~~~~~~l~~~Aa~~AL~dAGl~~~~~-~~~r~Gv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (406)
T PRK08439 62 DPKEVKKADRFIQLGLKAAREAMKDAGFLPEEL-DAERFGVSSASGIGGLPNIEKNSIICFEKGPRKISPFFIPSALVNM 140 (406)
T ss_pred CHHHHhhcCHHHHHHHHHHHHHHHHcCCCcccC-CCCCEEEEEecCCccHHHHHHHHHHHHhcCccccCchhcccccccH
Confidence 999999999999999999999999999987766 4789999999999888887777777777788889999999999999
Q ss_pred HHHHHHHhcCCCCCeeeecCCcchHHHHHHHHHHHHHcCCCCEEEEeecCCCcChHHHHHHhhhhccccccCCCCCCCCc
Q 011989 199 ASGHVSMKYGFQGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASR 278 (473)
Q Consensus 199 ~a~~ia~~lgl~Gp~~~v~~acasg~~Al~~A~~~I~~G~~d~vlv~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (473)
++++|+..||++||++++.++|+|++.||.+|+++|++|++|++||+|+|..+++..+..|...+.++.. ...|+..|+
T Consensus 141 ~a~~is~~~gl~Gp~~~~~~acas~~~Al~~A~~~i~~G~~d~~lv~g~d~~l~~~~~~~f~~~~~ls~~-~~~p~~~~r 219 (406)
T PRK08439 141 LGGFISIEHGLKGPNLSSVTACAAGTHAIIEAVKTIMLGGADKMLVVGAESAICPVGIGGFAAMKALSTR-NDDPKKASR 219 (406)
T ss_pred HHHHHHHHhCCCCCccccccHhHHHHHHHHHHHHHHHcCCCCEEEEecchhccCHHHHHHHHHhCccccC-CCCCccCcC
Confidence 9999999999999999999999999999999999999999999999999998999999999999988754 345678899
Q ss_pred CccCCCCceeeccceEEEEEccchHHHhcCCeEEEEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEE
Q 011989 279 PFDCGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYV 358 (473)
Q Consensus 279 pfd~~~~G~~~geGaaavvL~~~~~A~~~g~~~~a~i~g~~~~~d~~~~~~~~~~~~~~~~a~~~al~~agl~~~dId~v 358 (473)
|||.+++|+++|||++++|||++++|+++|+++|++|.|++.+.|+.+++.|++ .++.++|++||+++|+ +|||||
T Consensus 220 pfd~~~~G~v~gEGa~~lvLe~~~~A~~rg~~i~a~i~g~~~~~d~~~~~~p~~--~~~~~a~~~al~~ag~--~~i~~v 295 (406)
T PRK08439 220 PFDKDRDGFVMGEGAGALVLEEYESAKKRGAKIYAEIIGFGESGDANHITSPAP--EGPLRAMKAALEMAGN--PKIDYI 295 (406)
T ss_pred CccCCCCcEEeeCceEEEEEccHHHHHHCCCeEEEEEEeEEccCCCCCCCCCCH--HHHHHHHHHHHHHcCC--CccCEE
Confidence 999999999999999999999999999999999999999999999998888866 6778999999999998 799999
Q ss_pred EEcCCCCCCCCHHHHHHHHHHhhcccCCCCceeeccccchhhhHHhHHHHHHHHHHHHHHhCccCCCCCCCCCCCCCCCC
Q 011989 359 NAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLAIHHGVAPLTLNLAKPDPIFNDN 438 (473)
Q Consensus 359 ~~hgtgt~~~D~~E~~a~~~~~~~~~~~~~~~v~s~k~~~Gh~~~AsG~~~li~~~~~l~~~~ipp~~~~~~~~~~~~~~ 438 (473)
++|||||+.+|..|..+++++|+... ..++++++|+++||+++|+|++++++++++|++++|||++|+++++|.++++
T Consensus 296 ~~hgtgt~~~D~~E~~al~~~f~~~~--~~~~v~s~K~~~Gh~~~AsG~~~~~~~~~~l~~~~ipp~~~~~~~~~~~~~~ 373 (406)
T PRK08439 296 NAHGTSTPYNDKNETAALKELFGSKE--KVPPVSSTKGQIGHCLGAAGAIEAVISIMAMRDGILPPTINQETPDPECDLD 373 (406)
T ss_pred EccCCcCCCCCHHHHHHHHHHhcccC--CCCeEECcccccccCchhhhHHHHHHHHHHHhCCeeCCCCCCCCCCCCCCcc
Confidence 99999999999999999999998642 3468999999999999999999999999999999999999999999999999
Q ss_pred CCccccCCCCCCcEEEEeccccccceeeEEEeec
Q 011989 439 FMPLTASKDMPISAALSNSFGFGGTNASLLFTKC 472 (473)
Q Consensus 439 ~~~~~~~~~~~~~~~l~~s~g~gG~~~~~vl~~~ 472 (473)
+++ .+.+..+++.+|+|||||||+|+|+||++|
T Consensus 374 ~~~-~~~~~~~~~~~l~nsfgfGG~n~~lvl~~~ 406 (406)
T PRK08439 374 YIP-NVARKAELNVVMSNSFGFGGTNGVVIFKKV 406 (406)
T ss_pred cCC-CccccCCCCEEEEeeecCCCceEEEEEecC
Confidence 998 666777899999999999999999999986
|
|
| >TIGR03150 fabF beta-ketoacyl-acyl-carrier-protein synthase II | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-71 Score=567.49 Aligned_cols=407 Identities=57% Similarity=0.921 Sum_probs=374.2
Q ss_pred CceEEEecceecccCCCHHHHHHHHHcCCCceeeCCccccccCCCCccccccccCCcccceeEEecCCCCCCCCCcccCC
Q 011989 39 RRVVVTGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSKVAAVVPCGISSGEFNEDSWL 118 (473)
Q Consensus 39 ~~v~ItG~g~~~p~g~~~~~~~~~l~~G~s~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~~~~~ 118 (473)
++|+|||||+++|.|.++++||++|++|++++++++.++ ....+.++++.+++ ||+++|+
T Consensus 1 ~~v~ItG~g~~~p~g~~~~~~~~~l~~g~s~~~~~~~~~--------------~~~~~~~~~g~i~~------f~~~~~~ 60 (407)
T TIGR03150 1 RRVVVTGLGAVTPLGNGVEEFWENLLAGKSGIGPITRFD--------------ASDLPVKIAGEVKD------FDPEDYI 60 (407)
T ss_pred CcEEEEcceEECCCcCCHHHHHHHHHcCCCeeEECCccc--------------ccCCCCcEEEEeCC------cChhhcC
Confidence 479999999999999999999999999999999988654 23455677888886 9998889
Q ss_pred CchhhhccCHHHHHHHHHHHHHHHHcCCCCCCCCCCCceeEEEecCCCChhhHHHHHHHHHHhccccCCCcchhhhhhhH
Q 011989 119 NSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINM 198 (473)
Q Consensus 119 ~~~~~~~~~~~~~la~~aa~~Al~dAgl~~~~~~~~~~~gvivg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (473)
++++.++|+++++|+++++++||+|||++++++ +..++||++|++.+.....+.++..+.+.+.+.++|+.++..+.+.
T Consensus 61 ~~~~~~~~~~~~~l~~~aa~~Al~dAgl~~~~~-~~~~~gv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (407)
T TIGR03150 61 DKKEARRMDRFIQYALAAAKEAVEDSGLDIEEE-DAERVGVIIGSGIGGLETIEEQHIVLLEKGPRRVSPFFIPMSIINM 139 (407)
T ss_pred CHHHHhhcCHHHHHHHHHHHHHHHhcCCCcccC-CccceEEEEecCCCchHHHHHHHHHHHhcCccccChhhhhcccccH
Confidence 999999999999999999999999999988877 4889999999999988888888888888888888999899999999
Q ss_pred HHHHHHHhcCCCCCeeeecCCcchHHHHHHHHHHHHHcCCCCEEEEeecCCCcChHHHHHHhhhhccccccCCCCCCCCc
Q 011989 199 ASGHVSMKYGFQGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASR 278 (473)
Q Consensus 199 ~a~~ia~~lgl~Gp~~~v~~acasg~~Al~~A~~~I~~G~~d~vlv~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (473)
++++++..||++||+++++++|+|++.||.+|+++|++|++|++||+|+|.++++..+..|...+.++.. +..+...++
T Consensus 140 ~a~~is~~~gl~g~~~~v~~acaSg~~Al~~A~~~I~~G~~d~~lvgg~e~~~~~~~~~~~~~~~~ls~~-~~~~~~~~~ 218 (407)
T TIGR03150 140 AAGQISIRYGAKGPNHAVVTACATGTHAIGDAFRLIQRGDADVMIAGGAEAAITPLGIAGFAAMKALSTR-NDDPEKASR 218 (407)
T ss_pred HHHHHHHHhCCCCcccccccHHHHHHHHHHHHHHHHhcCCCCEEEEecccCcCCHHHHHHHHHhCcccCC-CCCCCcCCC
Confidence 9999999999999999999999999999999999999999999999999998999888888888877643 344567899
Q ss_pred CccCCCCceeeccceEEEEEccchHHHhcCCeEEEEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEE
Q 011989 279 PFDCGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYV 358 (473)
Q Consensus 279 pfd~~~~G~~~geGaaavvL~~~~~A~~~g~~~~a~i~g~~~~~d~~~~~~~~~~~~~~~~a~~~al~~agl~~~dId~v 358 (473)
|||.+++|+++|||++++||++++.|+++|.++|++|.|++.++|+.+.+.|.+...++.+++++||+++|++++|||||
T Consensus 219 pfd~~~~g~~~gEGAaalvL~~~~~A~~~g~~i~a~i~g~~~~~d~~~~~~~~~~~~~~~~ai~~Al~~Agi~~~dId~v 298 (407)
T TIGR03150 219 PFDKDRDGFVMGEGAGVLVLEELEHAKARGAKIYAEIVGYGMSGDAYHITAPAPEGEGAARAMRAALKDAGINPEDVDYI 298 (407)
T ss_pred CCcCCCCcEEEeceEEEEEEeeHHHHHHCCCeEEEEEEEEEECCCCCCCCCCCCCcHHHHHHHHHHHHHcCCCHhHCCEE
Confidence 99999999999999999999999999999999999999999999998888887777888999999999999999999999
Q ss_pred EEcCCCCCCCCHHHHHHHHHHhhcccCCCCceeeccccchhhhHHhHHHHHHHHHHHHHHhCccCCCCCCCCCCCCCCCC
Q 011989 359 NAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLAIHHGVAPLTLNLAKPDPIFNDN 438 (473)
Q Consensus 359 ~~hgtgt~~~D~~E~~a~~~~~~~~~~~~~~~v~s~k~~~Gh~~~AsG~~~li~~~~~l~~~~ipp~~~~~~~~~~~~~~ 438 (473)
|+|||||+.+|.+|..++.++|+... .+++|++.|+++||+++|||++++++++++|++++|||++|+++|+|.++++
T Consensus 299 e~h~tgt~~~D~~E~~a~~~~~~~~~--~~~~v~s~k~~~Gh~~~AsG~~~~~~~~~~l~~~~ipp~~~~~~~~~~~~~~ 376 (407)
T TIGR03150 299 NAHGTSTPLGDKAETKAIKRVFGDHA--YKLAVSSTKSMTGHLLGAAGAIEAIFTVLAIRDGVVPPTINLDNPDPECDLD 376 (407)
T ss_pred eCcCCCCCCCCHHHHHHHHHHhccCC--CCCceeCCcchhchhHHHHHHHHHHHHHHHHhcCCcCCCCCCCCCCCCCCcc
Confidence 99999999999999999999998642 3689999999999999999999999999999999999999999999999999
Q ss_pred CCccccCCCCCCcEEEEeccccccceeeEEEe
Q 011989 439 FMPLTASKDMPISAALSNSFGFGGTNASLLFT 470 (473)
Q Consensus 439 ~~~~~~~~~~~~~~~l~~s~g~gG~~~~~vl~ 470 (473)
+++ .+.+..+++++++|||||||+|+|+||+
T Consensus 377 ~v~-~~~~~~~~~~~l~~s~gfgG~n~~~vl~ 407 (407)
T TIGR03150 377 YVP-NEARERKIDYALSNSFGFGGHNASLVFK 407 (407)
T ss_pred ccC-CCCccCCcCEEEEecccCCCceEEEEeC
Confidence 998 5666777899999999999999999984
|
FabB sequences should fall well below the noise cutoff of this model. |
| >TIGR02813 omega_3_PfaA polyketide-type polyunsaturated fatty acid synthase PfaA | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-71 Score=641.52 Aligned_cols=420 Identities=27% Similarity=0.428 Sum_probs=363.2
Q ss_pred CCceEEEecceecccCCCHHHHHHHHHcCCCceeeCCccccccCCCCccccccccCCcccceeEEecCCCCCCCCCcccC
Q 011989 38 LRRVVVTGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSKVAAVVPCGISSGEFNEDSW 117 (473)
Q Consensus 38 ~~~v~ItG~g~~~p~g~~~~~~~~~l~~G~s~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~~~~ 117 (473)
.++|+||||||++|.+.++++||++|++|+++|++++..+|+.+.|+.... ...+..++++++++++ .+||+.+|
T Consensus 6 ~~~IAIvGmg~~~P~a~~~~~fW~~L~~G~~~i~~ip~~rw~~~~~~~~~~-~~~~~~~~~~ggfl~~----v~FD~~~F 80 (2582)
T TIGR02813 6 DMPIAIVGMASIFANSRYLNKFWDLIFEKIDAITDVPSDHWAKDDYYDSDK-SEADKSYCKRGGFLPE----VDFNPMEF 80 (2582)
T ss_pred CCCEEEEeeeeeCCCCCCHHHHHHHHHcCCCccCCCChhhCChhhccCccc-cccCCcccceeEecCc----cCCCHhhc
Confidence 467999999999999999999999999999999999999998665543322 1234567889999985 24999999
Q ss_pred -CCchhhhccCHHHHHHHHHHHHHHHHcCCCCCCCCCCCceeEEEecCCCChhhHH---------------------HHH
Q 011989 118 -LNSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTV---------------------DAA 175 (473)
Q Consensus 118 -~~~~~~~~~~~~~~la~~aa~~Al~dAgl~~~~~~~~~~~gvivg~~~g~~~~~~---------------------~~~ 175 (473)
+++++.+.|||+++|+++++++||+|||+... . +++|+|||+|++.+...... ...
T Consensus 81 ~i~p~ea~~mDpqqrl~L~~a~eALedAG~~~~-~-~~~r~GV~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (2582)
T TIGR02813 81 GLPPNILELTDISQLLSLVVAKEVLNDAGLPDG-Y-DRDKIGITLGVGGGQKQSSSLNARLQYPVLKKVFKASGVEDEDS 158 (2582)
T ss_pred CCCHHHHHhcCHHHHHHHHHHHHHHHhCCCCCC-C-CCCCEEEEEEECCCcccchhhhhhhcchhhhhhhhccccchhhH
Confidence 99999999999999999999999999999643 3 58899999998766432110 001
Q ss_pred HHHH---HhccccCCCcchhhhhhhHHHHHHHHhcCCCCCeeeecCCcchHHHHHHHHHHHHHcCCCCEEEEeecCCCcC
Q 011989 176 QMIC---EKRLRRLSPFFIPRILINMASGHVSMKYGFQGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSID 252 (473)
Q Consensus 176 ~~~~---~~~~~~~~~~~~~~~~~~~~a~~ia~~lgl~Gp~~~v~~acasg~~Al~~A~~~I~~G~~d~vlv~g~d~~~~ 252 (473)
+.+. ......+++..+++.+.|.++++|++.|||+||+++|+++|+|++.||++|+++|++|+||++||||++...+
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~g~~~n~~A~RIS~~f~L~Gps~tVdtACsSSL~Al~~A~~~L~~G~~D~alvGGv~~~~~ 238 (2582)
T TIGR02813 159 EMLIKKFQDQYIHWEENSFPGSLGNVISGRIANRFDLGGMNCVVDAACAGSLAAIRMALSELLEGRSEMMITGGVCTDNS 238 (2582)
T ss_pred HHhhhhhcccccccCccccccccccHHHHHHHHHhCCCCCcccccchhHHHHHHHHHHHHHHHcCCCCEEEEecceeeCC
Confidence 1111 1112345667789999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhhhhccccccCCCCCCCCcCccCCCCceeeccceEEEEEccchHHHhcCCeEEEEEEEEEEecCCC--CCCCC
Q 011989 253 ALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAH--HITQP 330 (473)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~pfd~~~~G~~~geGaaavvL~~~~~A~~~g~~~~a~i~g~~~~~d~~--~~~~~ 330 (473)
+..+..|++.+.++ +++.|+|||.+++||++|||+++|||+++++|+++|++||++|+|++.++||+ +++.|
T Consensus 239 p~~~~~fs~~~~lS------~~g~crpFD~~adG~v~GEGag~vvLkrL~dA~~dGd~IyAvI~G~g~~~DG~~~~itaP 312 (2582)
T TIGR02813 239 PFMYMSFSKTPAFT------TNEDIQPFDIDSKGMMIGEGIGMMALKRLEDAERDGDRIYAVIKGVGASSDGKFKSIYAP 312 (2582)
T ss_pred HHHHHHHHhccCcC------CCCCccCCCCCCCcccccceEEEEEeCcHHHHHhCCCcEEEEEEEEEEcCCCCCCCCcCC
Confidence 99999999999887 45789999999999999999999999999999999999999999999999998 45555
Q ss_pred CCChHHHHHHHHHHHHHcCCCCCCccEEEEcCCCCCCCCHHHHHHHHHHhhccc-CCCCceeeccccchhhhHHhHHHHH
Q 011989 331 HIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHA-TSGSLAFSSTKGAIGHLLGAAGAVE 409 (473)
Q Consensus 331 ~~~~~~~~~a~~~al~~agl~~~dId~v~~hgtgt~~~D~~E~~a~~~~~~~~~-~~~~~~v~s~k~~~Gh~~~AsG~~~ 409 (473)
...++.++|++||+++|++|+||+|||+|||||+.||.+|..|+.++|+... ...+++|+++|+++||+++|||+++
T Consensus 313 --~~~gq~~~i~~Al~~Agi~p~~I~yIeaHGTGT~~gD~~E~~Al~~vf~~~~~~~~~~~vgSvKs~iGH~~~AAG~a~ 390 (2582)
T TIGR02813 313 --RPEGQAKALKRAYDDAGFAPHTCGLIEAHGTGTAAGDVAEFGGLVSVFSQDNDQKQHIALGSVKSQIGHTKSTAGTAG 390 (2582)
T ss_pred --CHHHHHHHHHHHHHHcCCCHHHCCEEEecCCCCCCCCHHHHHHHHHHhcccccCCCCceeeccccccccchHhHHHHH
Confidence 4567799999999999999999999999999999999999999999998642 2357999999999999999999999
Q ss_pred HHHHHHHHHhCccCCCCCCCCCCCCCCCCCCcc---ccCCC------CCCcEEEEeccccccceeeEEEeec
Q 011989 410 AIFAVLAIHHGVAPLTLNLAKPDPIFNDNFMPL---TASKD------MPISAALSNSFGFGGTNASLLFTKC 472 (473)
Q Consensus 410 li~~~~~l~~~~ipp~~~~~~~~~~~~~~~~~~---~~~~~------~~~~~~l~~s~g~gG~~~~~vl~~~ 472 (473)
+|+++++|++++|||++|+++|+|.++++..++ .+.+. ..+|++++|||||||+|+|+||++|
T Consensus 391 lik~~lal~~~~iPp~~~~~~pnp~~~~~~~~~~v~~~~~pw~~~~~~~~r~a~vnsfGfGGtN~hvvlee~ 462 (2582)
T TIGR02813 391 MIKAVLALHHKVLPPTINVDQPNPKLDIENSPFYLNTETRPWMQREDGTPRRAGISSFGFGGTNFHMVLEEY 462 (2582)
T ss_pred HHHHHHHHhcCCcCCCCCCCCCCCCCCccccceeecCCcccCcccCCCCccEEEEeCccCCCeeEEEEEeec
Confidence 999999999999999999999999998763221 22222 2479999999999999999999987
|
Members of the seed for this alignment are involved in omega-3 polyunsaturated fatty acid biosynthesis, such as the protein PfaA from the eicosapentaenoic acid biosynthesis operon in Photobacterium profundum strain SS9. PfaA is encoded together with PfaB, PfaC, and PfaD, and the functions of the individual polypeptides have not yet been described. More distant homologs of PfaA, also included with the reach of this model, appear to be involved in polyketide-like biosynthetic mechanisms of polyunsaturated fatty acid biosynthesis, an alternative to the more familiar iterated mechanism of chain extension and desaturation, and in most cases are encoded near genes for homologs of PfaB, PfaC, and/or PfaD. |
| >PTZ00050 3-oxoacyl-acyl carrier protein synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-69 Score=552.64 Aligned_cols=415 Identities=52% Similarity=0.827 Sum_probs=365.6
Q ss_pred eecccCCCHHHHHHHHHcCCCceeeCCccccccCCCCcccc--ccccCCcccceeEEecCCCCCCCCCcccCCCchhhhc
Q 011989 48 MVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQ--LHAFGQLTSKVAAVVPCGISSGEFNEDSWLNSKDHRS 125 (473)
Q Consensus 48 ~~~p~g~~~~~~~~~l~~G~s~i~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~fd~~~~~~~~~~~~ 125 (473)
+++|.|.++++||++|++|+++|++++.++|+...++.... ......++++++++++. ..||+.+|... .+
T Consensus 1 ~vs~~G~~~~~~w~~L~~G~s~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~----~~f~~~~~~~~---~~ 73 (421)
T PTZ00050 1 VVTPLGVGAESTWEALIAGKSGIRKLTEFPKFLPDCIPEQKALENLVAAMPCQIAAEVDQ----SEFDPSDFAPT---KR 73 (421)
T ss_pred CCCCCcCCHHHHHHHHHcCCCeeecCCchhhcccccccccccccccccCCCCceEEECCc----ccCChhHcCCc---cc
Confidence 47999999999999999999999999988765443322111 11134567788888863 23887766322 24
Q ss_pred cCHHHHHHHHHHHHHHHHcCCC-CCCCCCCCceeEEEecCCCChhhHHHHHHHHHHhccccCCCcchhhhhhhHHHHHHH
Q 011989 126 IARFIAYALCAADEALHDAKWL-PSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVS 204 (473)
Q Consensus 126 ~~~~~~la~~aa~~Al~dAgl~-~~~~~~~~~~gvivg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia 204 (473)
.++.++|++.++++||+|||++ +.++ +..++|+++|++.+........+..+.+.+...++|+.++..+.|.++++|+
T Consensus 74 ~~~~~~l~~~aa~~Al~dAGl~~~~~~-~~~~~Gv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~is 152 (421)
T PTZ00050 74 ESRATHFAMAAAREALADAKLDILSEK-DQERIGVNIGSGIGSLADLTDEMKTLYEKGHSRVSPYFIPKILGNMAAGLVA 152 (421)
T ss_pred CCHHHHHHHHHHHHHHHHcCCCccccc-CcccEEEEEccCcccHHHHHHHHHHHHhcCcCcCCHHHHHhhhhhHHHHHHH
Confidence 5899999999999999999997 5655 4789999999999888877777777777788888999999999999999999
Q ss_pred HhcCCCCCeeeecCCcchHHHHHHHHHHHHHcCCCCEEEEeecCCCcChHHHHHHhhhhccccccCCCCCCCCcCccCCC
Q 011989 205 MKYGFQGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGR 284 (473)
Q Consensus 205 ~~lgl~Gp~~~v~~acasg~~Al~~A~~~I~~G~~d~vlv~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pfd~~~ 284 (473)
..||++||+++|+++|+|++.||.+|+++|++|++|++||+|+|..+.+..+..|...+.++..+...++..++|||.++
T Consensus 153 ~~~~l~Gp~~ti~~aCaSg~~Al~~A~~~I~~G~~d~~lvgG~e~~~~p~~~~~f~~~~~l~~~~~~~p~~~~~pfd~~~ 232 (421)
T PTZ00050 153 IKHKLKGPSGSAVTACATGAHCIGEAFRWIKYGEADIMICGGTEASITPVSFAGFSRMRALCTKYNDDPQRASRPFDKDR 232 (421)
T ss_pred HHhCCCCcccccccHhHHHHHHHHHHHHHHHcCCCCEEEECcccccCCHHHHHHHHhhhccccCcCCCCCccCCCCcCCC
Confidence 99999999999999999999999999999999999999999999988888888898888887655556778999999999
Q ss_pred CceeeccceEEEEEccchHHHhcCCeEEEEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHH-cCCCCCCccEEEEcCC
Q 011989 285 DGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQ-SGLQSHQVDYVNAHAT 363 (473)
Q Consensus 285 ~G~~~geGaaavvL~~~~~A~~~g~~~~a~i~g~~~~~d~~~~~~~~~~~~~~~~a~~~al~~-agl~~~dId~v~~hgt 363 (473)
+|+++|||++++||+++++|+++|.+||++|.|++.++|+.+.+.|.+.+.+..+++++||++ +|++++||||||+|||
T Consensus 233 ~G~~~gEGAaalvLe~~~~A~~~g~~i~a~i~g~~~~~d~~~~~~p~~~~~~~~~ai~~Al~~~Agi~~~dId~ie~hgt 312 (421)
T PTZ00050 233 AGFVMGEGAGILVLEELEHALRRGAKIYAEIRGYGSSSDAHHITAPHPDGRGARRCMENALKDGANININDVDYVNAHAT 312 (421)
T ss_pred CCEeeccceEEEEEeeHHHHHHCCCeEEEEEEEEEEcCCCCCCCCCCCChHHHHHHHHHHHHhccCCChhhCCEEECCCc
Confidence 999999999999999999999999999999999999999999988988889999999999999 9999999999999999
Q ss_pred CCCCCCHHHHHHHHHHhhcccCCCCceeeccccchhhhHHhHHHHHHHHHHHHHHhCccCCCCCCCCCCCCCCCCCCccc
Q 011989 364 STPLGDTVEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLAIHHGVAPLTLNLAKPDPIFNDNFMPLT 443 (473)
Q Consensus 364 gt~~~D~~E~~a~~~~~~~~~~~~~~~v~s~k~~~Gh~~~AsG~~~li~~~~~l~~~~ipp~~~~~~~~~~~~~~~~~~~ 443 (473)
||+.+|.+|..++.++|+... ..+++|+++|+++||+++|+|++++++++++|++++|||++|+++|+|.+++++++ .
T Consensus 313 gt~~~D~~E~~al~~~~~~~~-~~~~~v~s~K~~~GH~~~AaG~~~l~~~~l~l~~~~ipp~~~~~~~~~~~~l~~~~-~ 390 (421)
T PTZ00050 313 STPIGDKIELKAIKKVFGDSG-APKLYVSSTKGGLGHLLGAAGAVESIVTILSLYEQIIPPTINLENPDAECDLNLVQ-G 390 (421)
T ss_pred cCCCCCHHHHHHHHHHhcccc-CCCceEECccccccccHHHHHHHHHHHHHHHHHcCccCCCCCCCCCCCCCCccccC-C
Confidence 999999999999999998642 14689999999999999999999999999999999999999999999999998887 3
Q ss_pred cCCC--CCCcEEEEeccccccceeeEEEeec
Q 011989 444 ASKD--MPISAALSNSFGFGGTNASLLFTKC 472 (473)
Q Consensus 444 ~~~~--~~~~~~l~~s~g~gG~~~~~vl~~~ 472 (473)
..+. .+++.+|+|||||||+|+|+||++|
T Consensus 391 ~~~~~~~~~~~~l~nsfgfgG~n~~lvl~~~ 421 (421)
T PTZ00050 391 KTAHPLQSIDAVLSTSFGFGGVNTALLFTKY 421 (421)
T ss_pred cccCcCCCCCEEEEeeecCCCeeEEEEEeCC
Confidence 3322 2579999999999999999999986
|
|
| >cd00834 KAS_I_II Beta-ketoacyl-acyl carrier protein (ACP) synthase (KAS), type I and II | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-69 Score=550.25 Aligned_cols=406 Identities=54% Similarity=0.894 Sum_probs=374.6
Q ss_pred CceEEEecceecccCCCHHHHHHHHHcCCCceeeCCccccccCCCCccccccccCCcccceeEEecCCCCCCCCCcccCC
Q 011989 39 RRVVVTGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSKVAAVVPCGISSGEFNEDSWL 118 (473)
Q Consensus 39 ~~v~ItG~g~~~p~g~~~~~~~~~l~~G~s~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~~~~~ 118 (473)
++|+|||||+++|.|.+.++||++|++|++++++++.++ ...++..+++.+++ |+..+++
T Consensus 1 ~~i~I~G~g~~~p~g~~~~~~~~~l~~g~~~~~~~~~~~--------------~~~~~~~~~~~i~~------~~~~~~~ 60 (406)
T cd00834 1 RRVVITGLGAVTPLGNGVEEFWEALLAGRSGIRPITRFD--------------ASGFPSRIAGEVPD------FDPEDYL 60 (406)
T ss_pred CcEEEECcceeCCCcCCHHHHHHHHHcCCCeeEECCccc--------------ccCCCccEEEEcCC------CChhhcC
Confidence 479999999999999999999999999999999998765 23455677888886 7777669
Q ss_pred CchhhhccCHHHHHHHHHHHHHHHHcCCCCCCCCCCCceeEEEecCCCChhhHHHHHHHHHHhccccCCCcchhhhhhhH
Q 011989 119 NSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINM 198 (473)
Q Consensus 119 ~~~~~~~~~~~~~la~~aa~~Al~dAgl~~~~~~~~~~~gvivg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (473)
+++..+.|+++++|+++++++||+|||+++.++ +..+++|++|++.+.......++..+.+++.+.++|..++..+.+.
T Consensus 61 ~~~~~~~~~~~~~l~~~aa~~AL~dAgl~~~~~-~~~~~gv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (406)
T cd00834 61 DRKELRRMDRFAQFALAAAEEALADAGLDPEEL-DPERIGVVIGSGIGGLATIEEAYRALLEKGPRRVSPFFVPMALPNM 139 (406)
T ss_pred CHHHhccCCHHHHHHHHHHHHHHHHcCCCcccC-CccceEEEEccCCcchHHHHHHHHHHHhcCCcccChhHHhhhcccH
Confidence 999999999999999999999999999988776 4889999999999999999999888888888889999999999999
Q ss_pred HHHHHHHhcCCCCCeeeecCCcchHHHHHHHHHHHHHcCCCCEEEEeecCCCcChHHHHHHhhhhccccccCCCCCCCCc
Q 011989 199 ASGHVSMKYGFQGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASR 278 (473)
Q Consensus 199 ~a~~ia~~lgl~Gp~~~v~~acasg~~Al~~A~~~I~~G~~d~vlv~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (473)
++++|+..||++||+++++++|+|++.||..|+++|++|++|.+||+|+|..+.+..+..|...+.++.... .|+..++
T Consensus 140 ~a~~ia~~lgl~g~~~~v~~acas~~~Al~~A~~~i~~G~~d~aLvgg~d~~~~p~~~~~~~~~~~l~~~~~-~p~~~~~ 218 (406)
T cd00834 140 AAGQVAIRLGLRGPNYTVSTACASGAHAIGDAARLIRLGRADVVIAGGAEALITPLTLAGFAALRALSTRND-DPEKASR 218 (406)
T ss_pred HHHHHHHHhCCCCcccccchHHHHHHHHHHHHHHHHHcCCCCEEEEcCcccccCHHHHHHHHhcCCcCCCCC-CCccCCC
Confidence 999999999999999999999999999999999999999999999999999888999999999888875422 2566899
Q ss_pred CccCCCCceeeccceEEEEEccchHHHhcCCeEEEEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEE
Q 011989 279 PFDCGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYV 358 (473)
Q Consensus 279 pfd~~~~G~~~geGaaavvL~~~~~A~~~g~~~~a~i~g~~~~~d~~~~~~~~~~~~~~~~a~~~al~~agl~~~dId~v 358 (473)
|||.+++|+++|||++++||++.+.|++++.++|++|.|++.+.|+.+.+.|++...++.++++++|+++|++++|||||
T Consensus 219 pf~~~~~g~~~geGA~a~vL~~~~~A~~~g~~~~a~i~g~~~~~d~~~~~~~~~~~~~~~~~i~~al~~agi~~~dId~v 298 (406)
T cd00834 219 PFDKDRDGFVLGEGAGVLVLESLEHAKARGAKIYAEILGYGASSDAYHITAPDPDGEGAARAMRAALADAGLSPEDIDYI 298 (406)
T ss_pred CCCCCCCCEeeeccEEEEEEecHHHHHHCCCeEEEEEEEEEecccCCCCCCCCCCcHHHHHHHHHHHHHcCCCHHHCCEE
Confidence 99999999999999999999999999999999999999999999998888887778889999999999999999999999
Q ss_pred EEcCCCCCCCCHHHHHHHHHHhhcccCCCCceeeccccchhhhHHhHHHHHHHHHHHHHHhCccCCCCCCCCCCCCCCCC
Q 011989 359 NAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLAIHHGVAPLTLNLAKPDPIFNDN 438 (473)
Q Consensus 359 ~~hgtgt~~~D~~E~~a~~~~~~~~~~~~~~~v~s~k~~~Gh~~~AsG~~~li~~~~~l~~~~ipp~~~~~~~~~~~~~~ 438 (473)
++|||||+.+|.+|..++.++|+... .++++++.|+++||+++|||++++++++++|+++++||++|+++|+|.++++
T Consensus 299 ~~h~tgt~~~d~~E~~al~~~~~~~~--~~~~v~s~k~~~Gh~~~AsG~~~l~~~~~~l~~~~ip~~~~~~~~~~~~~~~ 376 (406)
T cd00834 299 NAHGTSTPLNDAAESKAIKRVFGEHA--KKVPVSSTKSMTGHLLGAAGAVEAIATLLALRDGVLPPTINLEEPDPECDLD 376 (406)
T ss_pred ecccccCccccHHHHHHHHHHhcccC--CCCceeCcchhhccchhhhhHHHHHHHHHHHhcCCcCCCCCCCCCCCCCCcc
Confidence 99999999999999999999998642 4689999999999999999999999999999999999999999999988888
Q ss_pred CCccccCCCCCCcEEEEeccccccceeeEEE
Q 011989 439 FMPLTASKDMPISAALSNSFGFGGTNASLLF 469 (473)
Q Consensus 439 ~~~~~~~~~~~~~~~l~~s~g~gG~~~~~vl 469 (473)
+++ .+.++++.|++++|+|||||+|+|+||
T Consensus 377 ~~~-~~~~~~~~~~~l~~s~g~gG~n~~~vl 406 (406)
T cd00834 377 YVP-NEAREAPIRYALSNSFGFGGHNASLVF 406 (406)
T ss_pred ccC-CCCccccccEEEEeeecCCceeeEEEC
Confidence 887 667778889999999999999999996
|
KASs are responsible for the elongation steps in fatty acid biosynthesis. KASIII catalyses the initial condensation and KAS I and II catalyze further elongation steps by Claisen condensation of malonyl-acyl carrier protein (ACP) with acyl-ACP. |
| >PRK07103 polyketide beta-ketoacyl:acyl carrier protein synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-69 Score=544.65 Aligned_cols=408 Identities=30% Similarity=0.450 Sum_probs=347.6
Q ss_pred CCceEEEecceecccCCCHHHHHHHHHcCCCceeeCCccccccCCCCccccccccCCcccceeEEecCCCCCCCCCcccC
Q 011989 38 LRRVVVTGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSKVAAVVPCGISSGEFNEDSW 117 (473)
Q Consensus 38 ~~~v~ItG~g~~~p~g~~~~~~~~~l~~G~s~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~~~~ 117 (473)
|++|||||||+++|.|.++++||++|++|+++|++++.+++.... ..........+++++++ |+.+.+
T Consensus 1 m~~VvItG~g~vsp~g~~~~~~w~~l~~g~s~i~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~------~~~~~~ 68 (410)
T PRK07103 1 MDEVVVTGVGVVSAIGQGRPSFAAALLAGRHAFGVMRRPGRQVPD------DAGAGLASAFIGAELDS------LALPER 68 (410)
T ss_pred CCCEEEEcceEECCCcCCHHHHHHHHHcCCCeEecCCcccccccc------cccccCCCceEEEEeCC------CChhhc
Confidence 379999999999999999999999999999999999875521000 00012234567888876 666667
Q ss_pred CCchhhhccCHHHHHHHHHHHHHHHHcCCCCCCCCCCCceeEEEecCCCChhhHHHHHHHHHHhccccCCCcchhhhhhh
Q 011989 118 LNSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILIN 197 (473)
Q Consensus 118 ~~~~~~~~~~~~~~la~~aa~~Al~dAgl~~~~~~~~~~~gvivg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (473)
++++..+++++..+|++.++++||+|||+++ . +.+++||++|++.+........++.+. ++...+.|......+.+
T Consensus 69 ~~~~~~r~~~~~~~lal~Aa~eAl~dAgl~~--~-~~~riGvivG~~~~~~~~~~~~~~~~~-~~~~~~~p~~~~~~~~~ 144 (410)
T PRK07103 69 LDAKLLRRASLSAQAALAAAREAWRDAALGP--V-DPDRIGLVVGGSNLQQREQALVHETYR-DRPAFLRPSYGLSFMDT 144 (410)
T ss_pred CCHHHhhcCCHHHHHHHHHHHHHHHhcCcCC--C-CCCCEEEEEccCCcchHHHHHHHHHhc-cCccccChhhhhhhcch
Confidence 8888889999999999999999999999953 2 478999999988766655555544432 34455677766777778
Q ss_pred HHHHHHHHhcCCCCCeeeecCCcchHHHHHHHHHHHHHcCCCCEEEEeecCCCcChHHHHHHhhhhccccc-cCCCCCCC
Q 011989 198 MASGHVSMKYGFQGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTK-YNGTPQEA 276 (473)
Q Consensus 198 ~~a~~ia~~lgl~Gp~~~v~~acasg~~Al~~A~~~I~~G~~d~vlv~g~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 276 (473)
.++++|+..||++||+++++++|+|++.||..|+++|++|++|+|||+|++...++.....|..++.++.. +...|...
T Consensus 145 ~~a~~ia~~lgl~G~~~tv~~acas~~~Al~~A~~~I~~G~~d~~lv~g~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~ 224 (410)
T PRK07103 145 DLVGLCSEQFGIRGEGFTVGGASASGQLAVIQAARLVQSGSVDACIAVGALMDLSYWECQALRSLGAMGSDRFADEPEAA 224 (410)
T ss_pred HHHHHHHHHhCCCCCcccccchhHHHHHHHHHHHHHHHcCCCCEEEEecccccCCHHHHHHHHHccccccCccCCCcccC
Confidence 89999999999999999999999999999999999999999999999999888888888888888877642 34557789
Q ss_pred CcCccCCCCceeeccceEEEEEccchHHHhcCCeEEEEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCcc
Q 011989 277 SRPFDCGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVD 356 (473)
Q Consensus 277 ~~pfd~~~~G~~~geGaaavvL~~~~~A~~~g~~~~a~i~g~~~~~d~~~~~~~~~~~~~~~~a~~~al~~agl~~~dId 356 (473)
|+|||.+++|+++|||++++||+++++|+++|+++|++|.|++.++|+.+.+.| ...++.+++++||+++|++++|||
T Consensus 225 ~rPfd~~~dG~v~gEGaaalvLe~~~~A~~~g~~i~a~I~g~~~~~d~~~~~~p--~~~~~~~a~~~Al~~Agi~~~dId 302 (410)
T PRK07103 225 CRPFDQDRDGFIYGEACGAVVLESAESARRRGARPYAKLLGWSMRLDANRGPDP--SLEGEMRVIRAALRRAGLGPEDID 302 (410)
T ss_pred cCCCCCCCCCeeEeeeEEEEEEccHHHHHHCCCceEEEEEEEEEecCCCCCCCC--CHHHHHHHHHHHHHHcCCCHHHCC
Confidence 999999999999999999999999999999999999999999999999886655 456678999999999999999999
Q ss_pred EEEEcCCCCCCCCHHHHHHHHHHhhcccCCCCceeeccccchhhhHHhHHHHHHHHHHHHHHhCccCCCCCCCCC-CCCC
Q 011989 357 YVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLAIHHGVAPLTLNLAKP-DPIF 435 (473)
Q Consensus 357 ~v~~hgtgt~~~D~~E~~a~~~~~~~~~~~~~~~v~s~k~~~Gh~~~AsG~~~li~~~~~l~~~~ipp~~~~~~~-~~~~ 435 (473)
||++|||||+.+|..|..+| ++.. ..++||++.|+++||+.+|+|++++++++++|++++|||++|+++| ++
T Consensus 303 ~v~~hgtgt~~~D~~E~~al---~~~~--~~~~~v~s~k~~~Gh~~~AsG~~~l~~~~l~l~~~~ipp~~~~~~~~~~-- 375 (410)
T PRK07103 303 YVNPHGTGSPLGDETELAAL---FASG--LAHAWINATKSLTGHGLSAAGIVELIATLLQMRAGFLHPSRNLDEPIDE-- 375 (410)
T ss_pred EEEccCCCCCCCCHHHHHHH---hcCC--CCCCeEECCCcccccCchhhhHHHHHHHHHHHhCCeeCCCCCCCCCCCC--
Confidence 99999999999999999999 3322 1368999999999999999999999999999999999999999988 44
Q ss_pred CCCCCccccCCCCCCcEEEEeccccccceeeEEEee
Q 011989 436 NDNFMPLTASKDMPISAALSNSFGFGGTNASLLFTK 471 (473)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~l~~s~g~gG~~~~~vl~~ 471 (473)
++++++ ...+..+++++|+|||||||+|+|+||++
T Consensus 376 ~~~~v~-~~~~~~~~~~~l~~s~gfGG~n~~~vl~~ 410 (410)
T PRK07103 376 RFRWVG-STAESARIRYALSLSFGFGGINTALVLER 410 (410)
T ss_pred CcCccC-CCCcCCCCCEEEEecccCCCceEEEEEeC
Confidence 456666 45566678999999999999999999985
|
|
| >COG3321 Polyketide synthase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-69 Score=598.05 Aligned_cols=415 Identities=28% Similarity=0.428 Sum_probs=370.3
Q ss_pred ceEEEecceecccCCCHHHHHHHHHcCCCceeeCCccccccCCCCccccccccCCcccceeEEecCCCCCCCCCcccC-C
Q 011989 40 RVVVTGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSKVAAVVPCGISSGEFNEDSW-L 118 (473)
Q Consensus 40 ~v~ItG~g~~~p~g~~~~~~~~~l~~G~s~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~~~~-~ 118 (473)
.|+|+||+|++|+.+++++||++|.+|++.|+++|..+|+...|+.... ...+....++++++++ .+.||+.|| |
T Consensus 5 ~IAIiGm~~rfPga~~~~~~W~~l~~g~~~i~~ip~~rwd~~~~~~~~~-~~~gk~~~~~ggfl~~---~~~FD~~fFgi 80 (1061)
T COG3321 5 PIAIIGMACRFPGADSPEEFWDLLKEGRDEITEVPADRWDVDAYYDPDP-TVPGKSYSRWGGFLDD---VDDFDALFFGI 80 (1061)
T ss_pred cEEEEeccccCCCCCCHHHHHHHHhcCCceeeecChhhhhHhhccCCcc-ccccccccccccccCC---ccccCHHHcCC
Confidence 3999999999999999999999999999999999999998776544333 4566778899999985 677999999 9
Q ss_pred CchhhhccCHHHHHHHHHHHHHHHHcCCCCCCCCCCCceeEEEecCCCChhhHHHHHHHHHHhccccCCCcchhhhhhhH
Q 011989 119 NSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINM 198 (473)
Q Consensus 119 ~~~~~~~~~~~~~la~~aa~~Al~dAgl~~~~~~~~~~~gvivg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (473)
+|+++..|||+++|.++.+++||||||+.+..+. ..++|||+|.+..++....... .. ...++...+...+.
T Consensus 81 sPrEA~~mDPQqRllLe~aw~AlEdAG~~~~~l~-g~~tgV~~g~~~~~y~~~~~~~------~~-~~~~~~~~g~~~~~ 152 (1061)
T COG3321 81 SPREAEAMDPQQRLLLEVAWEALEDAGIYPDSLR-GSATGVFAGASVADYLLLLLAD------DE-AEPEYAITGNSSSV 152 (1061)
T ss_pred CHHHHHhcCchHhHHHHHHHHHHHHcCCCccccC-CcceEEEEeeccCccccccccc------cc-cccceecccchhhH
Confidence 9999999999999999999999999999998774 6899999999876554322111 11 34566667777889
Q ss_pred HHHHHHHhcCCCCCeeeecCCcchHHHHHHHHHHHHHcCCCCEEEEeecCCCcChHHHHHHhhhhccccccCCCCCCCCc
Q 011989 199 ASGHVSMKYGFQGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASR 278 (473)
Q Consensus 199 ~a~~ia~~lgl~Gp~~~v~~acasg~~Al~~A~~~I~~G~~d~vlv~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (473)
+++||++.|+|+||+++|+++|+|+++|+++|++.|+.|+||++|++|++...++.....+++.++++ +++.|+
T Consensus 153 ~a~Risy~l~l~GPs~~vdtaCSSsLvAvhlA~~sL~~Ge~d~alaGgv~l~~~p~~~~~~~~~g~ls------~~g~c~ 226 (1061)
T COG3321 153 AAGRISYVLGLSGPSVTVDTACSSSLVAVHLACQSLRLGECDLALAGGVNLVLSPESSYLFSAGGMLS------PDGRCK 226 (1061)
T ss_pred HHHHHHHHhcCCCCCccccchhhHHHHHHHHHHHHHHcCCCCEEEecceEeccCCcceeeeecccCcC------CCCcce
Confidence 99999999999999999999999999999999999999999999999999999999999999988887 679999
Q ss_pred CccCCCCceeeccceEEEEEccchHHHhcCCeEEEEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEE
Q 011989 279 PFDCGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYV 358 (473)
Q Consensus 279 pfd~~~~G~~~geGaaavvL~~~~~A~~~g~~~~a~i~g~~~~~d~~~~~~~~~~~~~~~~a~~~al~~agl~~~dId~v 358 (473)
+||.+++|++.|||+++|||++.++|.++|++||++|+|.+.++||.......++..++...+++||+++|++|++|+||
T Consensus 227 ~fd~~adG~v~geG~g~vvLKrl~~A~~dgd~IyavI~gsavn~dG~~~gltaP~~~aQ~~v~~~al~~a~i~p~tv~yv 306 (1061)
T COG3321 227 AFDADADGYVRGEGAGVVVLKRLSDAERDGDRIYAVIRGSAVNQDGRSNGLTAPNLEAQADVIREALADAGIDPATVQYV 306 (1061)
T ss_pred ecccCCCCEEEeeeEEEEEEEEhHHHHhCCCeEEEEEEeeeeccCCCcCCCCCCCHHHHHHHHHHHHHhcCCCcccCcEE
Confidence 99999999999999999999999999999999999999999999996544444556788999999999999999999999
Q ss_pred EEcCCCCCCCCHHHHHHHHHHhhcccCCCCceeeccccchhhhHHhHHHHHHHHHHHHHHhCccCCCCCCCCCCCCCCCC
Q 011989 359 NAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLAIHHGVAPLTLNLAKPDPIFNDN 438 (473)
Q Consensus 359 ~~hgtgt~~~D~~E~~a~~~~~~~~~~~~~~~v~s~k~~~Gh~~~AsG~~~li~~~~~l~~~~ipp~~~~~~~~~~~~~~ 438 (473)
|+|||||++||++|..++..+|+......+|.++|+|+|+||+..|+|+++++|++++|+|++|||++|+++|+|.+++.
T Consensus 307 EaHgTGT~lGDpiE~~aL~~v~~~~~~~~~c~iGSvKsNiGH~~~AaGiagliK~~Lal~~~~ip~~l~~~~~np~i~~~ 386 (1061)
T COG3321 307 EAHGTGTPLGDPIEANALGAVYGEGAPAQPCAIGSVKSNIGHLEAAAGIAGLIKTALALKHGYIPPTLHFDTPNPEIDFD 386 (1061)
T ss_pred EecCCCCCCcCHHHHHHHHHHhccCCCCCcccccccccccccHHHHHHHHHHHHHHHhhhcCccCCcCCCCCCCcCCccc
Confidence 99999999999999999999999765567999999999999999999999999999999999999999999999999887
Q ss_pred CCcc---ccCCC----CCCcEEEEeccccccceeeEEEeec
Q 011989 439 FMPL---TASKD----MPISAALSNSFGFGGTNASLLFTKC 472 (473)
Q Consensus 439 ~~~~---~~~~~----~~~~~~l~~s~g~gG~~~~~vl~~~ 472 (473)
..|+ .+.++ ..+|++.++||||||+|+|+||+++
T Consensus 387 ~sp~~v~~~~~~W~~~~~prrAgvssfG~gGtNaHvIlEe~ 427 (1061)
T COG3321 387 SSPFVVPTEATPWPTGGGPRRAGVSSFGFGGTNAHVILEEA 427 (1061)
T ss_pred cCCeEeecCCcCCCCCCCCceeeeeccCCCCCceEEEEeec
Confidence 5443 22222 2589999999999999999999986
|
|
| >PRK05952 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-68 Score=534.51 Aligned_cols=378 Identities=38% Similarity=0.609 Sum_probs=330.9
Q ss_pred CCceEEEecceecccCCCHHHHHHHHHcCCCceeeCCccccccCCCCccccccccCCcccceeEEecCCCCCCCCCcccC
Q 011989 38 LRRVVVTGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSKVAAVVPCGISSGEFNEDSW 117 (473)
Q Consensus 38 ~~~v~ItG~g~~~p~g~~~~~~~~~l~~G~s~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~~~~ 117 (473)
|+||||||+|+++|+|. +++||++|++|+++|++++.+.. ...++. +.+. ++
T Consensus 1 ~~rVvITG~G~vsp~G~-~~~~~~~l~~G~sgi~~~~~~~~-------------~~~~~~---~~~~-------~~---- 52 (381)
T PRK05952 1 MMKVVVTGIGLVSALGD-LEQSWQRLLQGKSGIKLHQPFPE-------------LPPLPL---GLIG-------NQ---- 52 (381)
T ss_pred CCeEEEEeeEEECcccC-HHHHHHHHHcCCCCeEeCCcccc-------------cccccc---eeec-------cc----
Confidence 46899999999999999 99999999999999999876430 001111 0000 00
Q ss_pred CCchhhhccCHHHHHHHHHHHHHHHHcCCCCCCCCCCCceeEEEecCCCChhhHHHHHHHHHHhcc---ccCCCcchhhh
Q 011989 118 LNSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRL---RRLSPFFIPRI 194 (473)
Q Consensus 118 ~~~~~~~~~~~~~~la~~aa~~Al~dAgl~~~~~~~~~~~gvivg~~~g~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 194 (473)
+ ..++ +++..++++||+|||+... .+++||++|++.+....++++...+.+++. ..++|..++.+
T Consensus 53 --~---~~~~---~~~~~a~~~Al~dagl~~~----~~~~Gv~~Gt~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (381)
T PRK05952 53 --P---SSLE---DLTKTVVTAALKDAGLTPP----LTDCGVVIGSSRGCQGQWEKLARQMYQGDDSPDEELDLENWLDT 120 (381)
T ss_pred --c---cccc---HHHHHHHHHHHHhcCCCCC----CCCEEEEEeeCcchHHHHHHHHHHHhhcCCccccccCHHHHHHh
Confidence 1 1223 3556889999999999642 478999999999998888887776655443 25678888899
Q ss_pred hhhHHHHHHHHhcCCCCCeeeecCCcchHHHHHHHHHHHHHcCCCCEEEEeecCCCcChHHHHHHhhhhccccccCCCCC
Q 011989 195 LINMASGHVSMKYGFQGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQ 274 (473)
Q Consensus 195 ~~~~~a~~ia~~lgl~Gp~~~v~~acasg~~Al~~A~~~I~~G~~d~vlv~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (473)
++|.++++++..||++||+++++++|+|++.||.+|+++|++|++|++||+|+|...++..+..|..++.++.
T Consensus 121 ~~n~~a~~ia~~~~~~Gp~~ti~~aCasg~~Ai~~A~~~i~~G~~d~~lvgg~d~~~~~~~~~~~~~~~~ls~------- 193 (381)
T PRK05952 121 LPHQAAIAAARQIGTQGPVLAPMAACATGLWAIAQGVELIQTGQCQRVIAGAVEAPITPLTLAGFQQMGALAK------- 193 (381)
T ss_pred cccHHHHHHHHHhCCCCccccccchhHHHHHHHHHHHHHHHcCCCCEEEEccccccCCHHHHHHHHhcCCcCC-------
Confidence 9999999999999999999999999999999999999999999999999999998889999999999888863
Q ss_pred CCCcCccCCCCceeeccceEEEEEccchHHHhcCCeEEEEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCC
Q 011989 275 EASRPFDCGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQ 354 (473)
Q Consensus 275 ~~~~pfd~~~~G~~~geGaaavvL~~~~~A~~~g~~~~a~i~g~~~~~d~~~~~~~~~~~~~~~~a~~~al~~agl~~~d 354 (473)
..|+|||.+++|+++|||++++||+++++|+++|.++|++|.|++.++|+.+.+.|++......++++++|+++|++|+|
T Consensus 194 ~~~rPfd~~r~G~v~gEGaa~lvLe~~~~A~~rg~~i~a~I~g~~~~~d~~~~~~~~~~~~~~~~ai~~Al~~agi~p~d 273 (381)
T PRK05952 194 TGAYPFDRQREGLVLGEGGAILVLESAELAQKRGAKIYGQILGFGLTCDAYHMSAPEPDGKSAIAAIQQCLARSGLTPED 273 (381)
T ss_pred CCCCCCCCCCCCccccccEEEEEEeeHHHHHhCCCceEEEEEEEEecCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCHHH
Confidence 46999999999999999999999999999999999999999999999999999888888888999999999999999999
Q ss_pred ccEEEEcCCCCCCCCHHHHHHHHHHhhcccCCCCceeeccccchhhhHHhHHHHHHHHHHHHHHhCccCCCCCCCCCCCC
Q 011989 355 VDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLAIHHGVAPLTLNLAKPDPI 434 (473)
Q Consensus 355 Id~v~~hgtgt~~~D~~E~~a~~~~~~~~~~~~~~~v~s~k~~~Gh~~~AsG~~~li~~~~~l~~~~ipp~~~~~~~~~~ 434 (473)
||||++|||||+.+|..|..+++++|+. .++|++.|+++||+++|+|++++++++++|++++|||++|+++|+
T Consensus 274 Id~i~~hgtgt~~~D~~E~~al~~~fg~-----~~~v~s~K~~~GH~~~AaG~~~~~~~~~~l~~~~ipp~~~~~~~~-- 346 (381)
T PRK05952 274 IDYIHAHGTATRLNDQREANLIQALFPH-----RVAVSSTKGATGHTLGASGALGVAFSLLALRHQQLPPCVGLQEPE-- 346 (381)
T ss_pred eeEEEccCCCCCCCcHHHHHHHHHHcCC-----CCeeecchhhhccChHHHHHHHHHHHHHHHhcCccCCCCCCCCCC--
Confidence 9999999999999999999999999974 489999999999999999999999999999999999999999875
Q ss_pred CCCCCCccccCCCCCCcEEEEeccccccceeeEEEee
Q 011989 435 FNDNFMPLTASKDMPISAALSNSFGFGGTNASLLFTK 471 (473)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~l~~s~g~gG~~~~~vl~~ 471 (473)
+++++++ +++..+++++++|||||||+|+++||++
T Consensus 347 ~~~~~v~--~~~~~~~~~~l~~s~gfGG~na~lvl~~ 381 (381)
T PRK05952 347 FDLNFVR--QAQQSPLQNVLCLSFGFGGQNAAIALGK 381 (381)
T ss_pred CCCCcCC--CcccCCCCEEEEeeecCCCeeEEEEEeC
Confidence 4566665 3566678999999999999999999985
|
|
| >cd00828 elong_cond_enzymes "elongating" condensing enzymes are a subclass of decarboxylating condensing enzymes, including beta-ketoacyl [ACP] synthase, type I and II and polyketide synthases | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-68 Score=539.52 Aligned_cols=395 Identities=37% Similarity=0.573 Sum_probs=352.8
Q ss_pred CceEEEecceecccCCC---HHHHHHHHHcCCCceeeCCccccccCCCCccccccccCCcccceeEEecCCCCCCCCCcc
Q 011989 39 RRVVVTGIGMVTPLGCG---AETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSKVAAVVPCGISSGEFNED 115 (473)
Q Consensus 39 ~~v~ItG~g~~~p~g~~---~~~~~~~l~~G~s~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~~ 115 (473)
.+|+|||||+++|.|.+ .++||++|.+|++++++++.++ ..++..+++.+++ |+
T Consensus 1 ~~v~ItG~g~v~p~g~~~~~~~~~w~~l~~g~s~i~~~~~~~---------------~~~~~~~~g~i~~------~~-- 57 (407)
T cd00828 1 SRVVITGIGVVSPHGEGCDEVEEFWEALREGRSGIAPVARLK---------------SRFDRGVAGQIPT------GD-- 57 (407)
T ss_pred CCEEEECceeecCCCCCCCCHHHHHHHHHcCCCceeeCCccc---------------ccCCccEEEEccC------CC--
Confidence 37999999999999999 9999999999999999988754 1345567788775 54
Q ss_pred cCCCchhhhcc---CHHHHHHHHHHHHHHHHcCCCCCC-CCCCCceeEEEecCCCChhhHHHHHHHHHHhccccCCCcch
Q 011989 116 SWLNSKDHRSI---ARFIAYALCAADEALHDAKWLPSD-QGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFI 191 (473)
Q Consensus 116 ~~~~~~~~~~~---~~~~~la~~aa~~Al~dAgl~~~~-~~~~~~~gvivg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (473)
++++..+++ +++++|+++++++||+|||+++.+ + +..++|+++|++.+........+..+. +..+|+.+
T Consensus 58 --~~~~~~~~~~~~~~~~~l~~~aa~~Al~dAGl~~~~~~-~~~~~gv~~g~~~~~~~~~~~~~~~~~----~~~~~~~~ 130 (407)
T cd00828 58 --IPGWDAKRTGIVDRTTLLALVATEEALADAGITDPYEV-HPSEVGVVVGSGMGGLRFLRRGGKLDA----RAVNPYVS 130 (407)
T ss_pred --cCHHHHHhccCCCHHHHHHHHHHHHHHHhCCCCccccC-CccCeEEEEeeccCCHHHHHHHHHHHh----hccCCccc
Confidence 566777777 999999999999999999998766 4 478999999999988877766555443 34667788
Q ss_pred hhhhh--hHHHHHHHHhcCC-CCCeeeecCCcchHHHHHHHHHHHHHcCCCCEEEEeecCCCcChHHHHHHhhhhccccc
Q 011989 192 PRILI--NMASGHVSMKYGF-QGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTK 268 (473)
Q Consensus 192 ~~~~~--~~~a~~ia~~lgl-~Gp~~~v~~acasg~~Al~~A~~~I~~G~~d~vlv~g~d~~~~~~~~~~~~~~~~~~~~ 268 (473)
+..+. +.++++|+..||+ +||+++++++|+|++.||..|+++|++|++|++||+|+|.++ +..+..|..++.++..
T Consensus 131 ~~~~~~~~~~a~~is~~~gl~~Gp~~tv~~aCaS~~~Al~~A~~~I~~G~~d~~lvgg~d~~~-~~~~~~f~~~~~ls~~ 209 (407)
T cd00828 131 PKWMLSPNTVAGWVNILLLSSHGPIKTPVGACATALEALDLAVEAIRSGKADIVVVGGVEDPL-EEGLSGFANMGALSTA 209 (407)
T ss_pred chhccccchHHHHHHHHhCcCCCCCcCcccHHHHHHHHHHHHHHHHHcCCCCEEEEccccccC-hHHHHHHHHcCCCCCC
Confidence 88887 9999999999999 999999999999999999999999999999999999999977 8888888888888753
Q ss_pred cCCCCCCCCcCccCCCCceeeccceEEEEEccchHHHhcCCeEEEEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHHc
Q 011989 269 YNGTPQEASRPFDCGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQS 348 (473)
Q Consensus 269 ~~~~~~~~~~pfd~~~~G~~~geGaaavvL~~~~~A~~~g~~~~a~i~g~~~~~d~~~~~~~~~~~~~~~~a~~~al~~a 348 (473)
...+...++|||.+++|+++|||++++|||++++|+++|.++|++|.|++.++|+.+...+. ...++.+++++||+++
T Consensus 210 -~~~~~~~~~pfd~~~~G~~~gEGAaalvLe~~~~A~~rg~~i~a~i~g~~~~~d~~~~~~~~-~~~~~~~a~~~Al~~A 287 (407)
T cd00828 210 -EEEPEEMSRPFDETRDGFVEAEGAGVLVLERAELALARGAPIYGRVAGTASTTDGAGRSVPA-GGKGIARAIRTALAKA 287 (407)
T ss_pred -CCCCCcccCCCcCCCCcEEeecceEEEEEeeHHHHHHCCCeEEEEEEEEEeccCCCCCCCCC-ChHHHHHHHHHHHHHc
Confidence 22345789999999999999999999999999999999999999999999999998877666 6788999999999999
Q ss_pred CCCCCCccEEEEcCCCCCCCCHHHHHHHHHHhhcccCCCCceeeccccchhhhHHhHHHHHHHHHHHHHHhCccCCCCCC
Q 011989 349 GLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLAIHHGVAPLTLNL 428 (473)
Q Consensus 349 gl~~~dId~v~~hgtgt~~~D~~E~~a~~~~~~~~~~~~~~~v~s~k~~~Gh~~~AsG~~~li~~~~~l~~~~ipp~~~~ 428 (473)
|++++|||||++|||||+.+|..|..+++++|+... .+++++++|+++||+++|+|++++++++++|+++++||++|+
T Consensus 288 gi~~~dId~i~~hgtgt~~~D~~E~~ai~~~~~~~~--~~~~v~s~K~~~Gh~~~Asg~~~l~~~~~~l~~~~ipp~~~~ 365 (407)
T cd00828 288 GLSLDDLDVISAHGTSTPANDVAESRAIAEVAGALG--APLPVTAQKALFGHSKGAAGALQLIGALQSLEHGLIPPTANL 365 (407)
T ss_pred CCCHHHcCEEecccccCccccHHHHHHHHHHHhccC--CCceeecccchhccchhhhhHHHHHHHHHHHhcCccCCCCCC
Confidence 999999999999999999999999999999998653 468999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCccccCCCCC--CcEEEEeccccccceeeEEE
Q 011989 429 AKPDPIFNDNFMPLTASKDMP--ISAALSNSFGFGGTNASLLF 469 (473)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~--~~~~l~~s~g~gG~~~~~vl 469 (473)
++++|.+++++++ .+.+.++ ++.+++|||||||+|+|+||
T Consensus 366 ~~~~~~~~~~~~~-~~~~~~~~~~~~al~~s~gfgG~n~~lv~ 407 (407)
T cd00828 366 DDVDPDVEHLSVV-GLSRDLNLKVRAALVNAFGFGGSNAALVL 407 (407)
T ss_pred CCCCccccccccc-CcCccCCCCccEEEEecccCCCcceEEEC
Confidence 9999999888887 5666666 49999999999999999986
|
They are characterized by the utlization of acyl carrier protein (ACP) thioesters as primer substrates, as well as the nature of their active site residues. |
| >PRK06501 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-66 Score=526.58 Aligned_cols=401 Identities=38% Similarity=0.530 Sum_probs=344.1
Q ss_pred CCceEEEecceecccCCCHHHHHHHHHcCCCceeeCCccccccCCCCccccccccCCcccceeEEecCCCCCCCCCcccC
Q 011989 38 LRRVVVTGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSKVAAVVPCGISSGEFNEDSW 117 (473)
Q Consensus 38 ~~~v~ItG~g~~~p~g~~~~~~~~~l~~G~s~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~~~~ 117 (473)
.++|+|||||+++|.|.+.++||++|++|++++++++.++ ...+..++++.++. |+. .
T Consensus 10 ~~~VvITG~G~vs~~G~~~~~~~~~L~~G~s~i~~~~~~~--------------~~~~~~~~~g~~~~------~~~-~- 67 (425)
T PRK06501 10 RPIVAVTGMGVVTSLGQGKADNWAALTAGESGIHTITRFP--------------TEGLRTRIAGTVDF------LPE-S- 67 (425)
T ss_pred CcCEEEEeeeEECCCCCCHHHHHHHHHcCCCceEcCCccc--------------ccCCCCceEEEEee------ccc-c-
Confidence 4579999999999999999999999999999999997655 34456677787752 221 1
Q ss_pred CCchhhhccCHHHHHHHHHHHHHHHHcCCCCCCC-------------CCCCceeEEEecCCCChhhHHHHHHHHHHhccc
Q 011989 118 LNSKDHRSIARFIAYALCAADEALHDAKWLPSDQ-------------GQKERTGVSIGGGIGSISDTVDAAQMICEKRLR 184 (473)
Q Consensus 118 ~~~~~~~~~~~~~~la~~aa~~Al~dAgl~~~~~-------------~~~~~~gvivg~~~g~~~~~~~~~~~~~~~~~~ 184 (473)
....+++.+++++.++++||+|||+...+. ..+++++++.++...... .+..+......
T Consensus 68 ----~~~~~~~~~~~~~~aa~~Al~dAgl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~ 139 (425)
T PRK06501 68 ----PFGASALSEALARLAAEEALAQAGIGKGDFPGPLFLAAPPVELEWPARFALAAAVGDNDAP----SYDRLLRAARG 139 (425)
T ss_pred ----cccccCHHHHHHHHHHHHHHHHcCCCccccccceeeccccccCCCCceEEEEEecCCccHH----HHHHHHhhcCc
Confidence 122456788999999999999999953221 125678888877654322 23333343333
Q ss_pred cCCCcchhhhhhhHHHHHHHHhcCCCCCeeeecCCcchHHHHHHHHHHHHHcCCCCEEEEeecCCCcChHHHHHHhhhhc
Q 011989 185 RLSPFFIPRILINMASGHVSMKYGFQGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRA 264 (473)
Q Consensus 185 ~~~~~~~~~~~~~~~a~~ia~~lgl~Gp~~~v~~acasg~~Al~~A~~~I~~G~~d~vlv~g~d~~~~~~~~~~~~~~~~ 264 (473)
+..+..++....+.++++|+..||++||+++++++|+|++.||.+|+++|++|++|++||+|+|..+++..+..|..++.
T Consensus 140 ~~~~~~~~~~~~~~~a~~i~~~~gl~G~~~~i~~aCaS~~~Al~~A~~~I~~G~~d~vlvgG~d~~~~~~~~~~~~~~~~ 219 (425)
T PRK06501 140 GRFDALHERFQFGSIADRLADRFGTRGLPISLSTACASGATAIQLGVEAIRRGETDRALCIATDGSVSAEALIRFSLLSA 219 (425)
T ss_pred ccCChhhhhhcccHHHHHHHHHhCCCCCceeecCccHHHHHHHHHHHHHHHcCCCCEEEEeeecccCCHHHHHHHHHhhc
Confidence 34455567777888999999999999999999999999999999999999999999999999998889988888988888
Q ss_pred cccccCCCCCCCCcCccCCCCceeeccceEEEEEccchHHHhcCCeEEEEEEEEEEecCCCCCCCCCCChHHHHHHHHHH
Q 011989 265 LTTKYNGTPQEASRPFDCGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRA 344 (473)
Q Consensus 265 ~~~~~~~~~~~~~~pfd~~~~G~~~geGaaavvL~~~~~A~~~g~~~~a~i~g~~~~~d~~~~~~~~~~~~~~~~a~~~a 344 (473)
++.. .+.+...|+|||.+++|+++|||++++|||+.++|+++|.+||++|.|++.+.|+.+.+.+.+....+.++++++
T Consensus 220 ls~~-~~~~~~~~rpfd~~r~G~v~GEGaaalVLe~~~~A~~rg~~i~a~i~g~~~~~d~~~~~~~~~~~~~~~~ai~~A 298 (425)
T PRK06501 220 LSTQ-NDPPEKASKPFSKDRDGFVMAEGAGALVLESLESAVARGAKILGIVAGCGEKADSFHRTRSSPDGSPAIGAIRAA 298 (425)
T ss_pred cccC-CCCCCcccCCCCCCCCCeeeeccEEEEEECcHHHHHHCCCeEEEEEEEEEEccCCCCCCCCCCCHHHHHHHHHHH
Confidence 7643 334667899999999999999999999999999999999999999999999999988877777788889999999
Q ss_pred HHHcCCCCCCccEEEEcCCCCCCCCHHHHHHHHHHhhcccCCCCceeeccccchhhhHHhHHHHHHHHHHHHHHhCccCC
Q 011989 345 LKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLAIHHGVAPL 424 (473)
Q Consensus 345 l~~agl~~~dId~v~~hgtgt~~~D~~E~~a~~~~~~~~~~~~~~~v~s~k~~~Gh~~~AsG~~~li~~~~~l~~~~ipp 424 (473)
|+++|++++|||||++|||||+.+|..|..++.++|+... ..+||++.|+++||+++|+|++++++++++|++++|||
T Consensus 299 L~~agi~p~dId~i~~Hgtgt~~~d~~E~~al~~~~~~~~--~~~pv~s~k~~~Gh~~~AsG~~~~~~~~l~l~~~~ipp 376 (425)
T PRK06501 299 LADAGLTPEQIDYINAHGTSTPENDKMEYLGLSAVFGERL--ASIPVSSNKSMIGHTLTAAGAVEAVFSLLTIQTGRLPP 376 (425)
T ss_pred HHHcCCCHHHcCEEEecCccCcchHHHHHHHHHHHhcccC--CCcEEECCCcccCCCchhhhHHHHHHHHHHHhcCcCCC
Confidence 9999999999999999999999999999999999997432 46899999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCccccCCCCCCcEEEEeccccccceeeEEEeec
Q 011989 425 TLNLAKPDPIFNDNFMPLTASKDMPISAALSNSFGFGGTNASLLFTKC 472 (473)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~g~gG~~~~~vl~~~ 472 (473)
++|+++|+|.+++++++ ...+..+++.+++|||||||+|+|+||+++
T Consensus 377 ~~n~~~~~~~~~~~~~~-~~~~~~~~~~~l~ns~gfgG~n~~~vl~~~ 423 (425)
T PRK06501 377 TINYDNPDPAIPLDVVP-NVARDARVTAVLSNSFGFGGQNASLVLTAE 423 (425)
T ss_pred cCCCCCCCCCCCcccCC-CcccCCCCCEEEEeCccCCCeeEEEEEecC
Confidence 99999999999999988 555667899999999999999999999987
|
|
| >PRK14691 3-oxoacyl-(acyl carrier protein) synthase II; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-66 Score=511.67 Aligned_cols=339 Identities=49% Similarity=0.781 Sum_probs=318.4
Q ss_pred cCHHHHHHHHHHHHHHHHcCCCCCCCCCCCceeEEEecCCCChhhHHHHHHHHHHhccccCCCcchhhhhhhHHHHHHHH
Q 011989 126 IARFIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSM 205 (473)
Q Consensus 126 ~~~~~~la~~aa~~Al~dAgl~~~~~~~~~~~gvivg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~ 205 (473)
+++.+++++.|+++||+|||+. .+++|+||++|++.+....+.++++.+.+++...++|+.++.++.|.++++|+.
T Consensus 1 ~~~~~~~~~~a~~~a~~~a~~~----~~~~r~Gv~~G~~~g~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~n~~a~~is~ 76 (342)
T PRK14691 1 MGRWWRYKWITFHPSLTHADNT----EKQERTATIIGAGIGGFPAIAHAVRTSDSRGPKRLSPFTVPSFLVNLAAGHVSI 76 (342)
T ss_pred CCHHHHHHHHHHHHHHHhCCCC----CCcccEEEEEecCcccHHHHHHHHHHHHhcCccccChhHHhhhhhhHHHHHHHH
Confidence 4688999999999999999985 257799999999999999998888888888888999999999999999999999
Q ss_pred hcCCCCCeeeecCCcchHHHHHHHHHHHHHcCCCCEEEEeecCCCcChHHHHHHhhhhccccccCCCCCCCCcCccCCCC
Q 011989 206 KYGFQGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRD 285 (473)
Q Consensus 206 ~lgl~Gp~~~v~~acasg~~Al~~A~~~I~~G~~d~vlv~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pfd~~~~ 285 (473)
.||++||+++++++|+|++.||..|+++|+.|++|++||+|+|..+++..+..|...+.++......|+..|+|||.+++
T Consensus 77 ~~~l~Gp~~ti~~aCaSg~~Al~~A~~~I~~G~~d~~ivgg~d~~~~~~~~~~f~~~~~ls~~~~~~p~~~~rPFd~~r~ 156 (342)
T PRK14691 77 KHHFKGPIGAPVTACAAGVQAIGDAVRMIRNNEADVALCGGAEAVIDTVSLAGFAAARALSTHFNSTPEKASRPFDTARD 156 (342)
T ss_pred HhCCCCCccccccHhHHHHHHHHHHHHHHHcCCCCEEEEecccccCCHHHHHHHHHhhhhhcCCCCCCCcCCCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999998999999999986555668889999999999
Q ss_pred ceeeccceEEEEEccchHHHhcCCeEEEEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEEEEcCCCC
Q 011989 286 GFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYVNAHATST 365 (473)
Q Consensus 286 G~~~geGaaavvL~~~~~A~~~g~~~~a~i~g~~~~~d~~~~~~~~~~~~~~~~a~~~al~~agl~~~dId~v~~hgtgt 365 (473)
|+++|||++++||+++++|+++|.++|++|.|++.++|+.+.+.|.+.+.+..+++++||+++||+++|||||++|||||
T Consensus 157 G~v~gEGAa~lvLes~~~A~~rG~~i~a~I~g~~~~~d~~~~~~p~p~~~~~~~ai~~AL~~Agl~p~dIdyIeaHgtgT 236 (342)
T PRK14691 157 GFVMGEGAGLLIIEELEHALARGAKPLAEIVGYGTSADAYHMTSGAEDGDGAYRAMKIALRQAGITPEQVQHLNAHATST 236 (342)
T ss_pred CccccceEEEEEEeeHHHHHhCCCCceEEEEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHcCCCHHHCCEEEecCCCC
Confidence 99999999999999999999999999999999999999998888888889999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHhhcccCCCCceeeccccchhhhHHhHHHHHHHHHHHHHHhCccCCCCCCCCCCCCC-CCCCCcccc
Q 011989 366 PLGDTVEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLAIHHGVAPLTLNLAKPDPIF-NDNFMPLTA 444 (473)
Q Consensus 366 ~~~D~~E~~a~~~~~~~~~~~~~~~v~s~k~~~Gh~~~AsG~~~li~~~~~l~~~~ipp~~~~~~~~~~~-~~~~~~~~~ 444 (473)
+.+|.+|..+|+++|+.. ..+||+++|+++||+++|+|++++++++++|++++|||++|+++|+|.+ ++++++ .+
T Consensus 237 ~~~D~~E~~Ai~~~fg~~---~~~~v~s~K~~~GH~~~AaG~~~~~~~~l~l~~~~ippt~n~~~~d~~~~~~~~v~-~~ 312 (342)
T PRK14691 237 PVGDLGEINAIKHLFGES---NALAITSTKSATGHLLGAAGGLETIFTVLALRDQIVPATLNLENPDPAAKGLNIIA-GN 312 (342)
T ss_pred cCCCHHHHHHHHHHhCCC---CCceEECCcccccCCcchhhHHHHHHHHHHHhCCccCCcCCCCCCCccccccCccc-CC
Confidence 999999999999999853 3689999999999999999999999999999999999999999999998 588887 56
Q ss_pred CCCCCCcEEEEeccccccceeeEEEeec
Q 011989 445 SKDMPISAALSNSFGFGGTNASLLFTKC 472 (473)
Q Consensus 445 ~~~~~~~~~l~~s~g~gG~~~~~vl~~~ 472 (473)
++..+.+++|+|+|||||+|+++||++|
T Consensus 313 ~~~~~~~~al~nsfgfGG~n~~lvl~~~ 340 (342)
T PRK14691 313 AQPHDMTYALSNGFGFAGVNASILLKRW 340 (342)
T ss_pred CccCCCCEEEEeCccCCCeeEEEEEeec
Confidence 6667899999999999999999999997
|
|
| >smart00825 PKS_KS Beta-ketoacyl synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-66 Score=528.51 Aligned_cols=414 Identities=28% Similarity=0.447 Sum_probs=356.0
Q ss_pred eEEEecceecccCCCHHHHHHHHHcCCCceeeCCccccccCCCCccccccccCCcccceeEEecCCCCCCCCCcccC-CC
Q 011989 41 VVVTGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSKVAAVVPCGISSGEFNEDSW-LN 119 (473)
Q Consensus 41 v~ItG~g~~~p~g~~~~~~~~~l~~G~s~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~~~~-~~ 119 (473)
|+|||||+++|.|.++++||++|++|++++++++..+|....++.+......+......++.+++ ...||++.| ++
T Consensus 1 v~ItG~g~~~p~g~~~~~~~~~l~~g~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~---~~~~d~~~~~i~ 77 (424)
T smart00825 1 IAIVGMSCRFPGADSPEEFWDLLREGRDAITEIPADRWDADAFYYDPDPDRPGKSYVRWGGFLDD---VDLFDAAFFGIS 77 (424)
T ss_pred CEEEEEEeeCCCCCCHHHHHHHHHcCCcccccCChHHcCccccccccccccCCCcccccceecCc---hhhCCHhHcCCC
Confidence 68999999999999999999999999999999987777655544333222223345566676653 234888888 89
Q ss_pred chhhhccCHHHHHHHHHHHHHHHHcCCCCCCCCCCCceeEEEecCCCChhhHHHHHHHHHHhccccCCCcchhhhhhhHH
Q 011989 120 SKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMA 199 (473)
Q Consensus 120 ~~~~~~~~~~~~la~~aa~~Al~dAgl~~~~~~~~~~~gvivg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (473)
+++.+++++.++|+++|+++||+|||+++.++ +.++++|++|++.+.+ .....+....++++.++..+.+..
T Consensus 78 ~~~~~~~~~~~~l~~~aa~~Al~dAGl~~~~i-d~~~~gv~~g~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~ 149 (424)
T smart00825 78 PREAEAMDPQQRLLLEVAWEALEDAGIDPESL-RGSRTGVFVGAMSSDY-------AELLARDPEDIEGYAATGTARSFI 149 (424)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHcCCChhHc-CCCCCEEEEEEcHHHH-------HHHHhhCccccchhhhccchhHHH
Confidence 99999999999999999999999999988776 4779999999875432 222334555677888888888999
Q ss_pred HHHHHHhcCCCCCeeeecCCcchHHHHHHHHHHHHHcCCCCEEEEeecCCCcChHHHHHHhhhhccccccCCCCCCCCcC
Q 011989 200 SGHVSMKYGFQGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRP 279 (473)
Q Consensus 200 a~~ia~~lgl~Gp~~~v~~acasg~~Al~~A~~~I~~G~~d~vlv~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 279 (473)
+++++..||++||+++++++|+|++.||.+|+++|++|++|+|||+|+|....+..+..+...+.++ +...++|
T Consensus 150 a~~i~~~lgl~g~~~~v~~acasg~~Al~~A~~~I~~G~~d~vlvgg~~~~~~~~~~~~~~~~~~l~------~~~~~~p 223 (424)
T smart00825 150 ANRISYFFDLRGPSVTVDTACSSSLVALHLACQSLRSGECDMALAGGVNLILSPDTFVGFSRAGMLS------PDGRCKT 223 (424)
T ss_pred HHHHHHHhCCCCCccccccHhHHHHHHHHHHHHHHHcCCCCeeEEeeeeecCCHHHHHHHhhcCCCC------CCCCCCC
Confidence 9999999999999999999999999999999999999999999999999988888888888777665 4578999
Q ss_pred ccCCCCceeeccceEEEEEccchHHHhcCCeEEEEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEEE
Q 011989 280 FDCGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYVN 359 (473)
Q Consensus 280 fd~~~~G~~~geGaaavvL~~~~~A~~~g~~~~a~i~g~~~~~d~~~~~~~~~~~~~~~~a~~~al~~agl~~~dId~v~ 359 (473)
|+.+++|+++|||++++||++++.|++++.++|++|.|++..+++.+.....+.......+++++|+++|++++|||||+
T Consensus 224 f~~~~~g~~~geGAaalVLe~~e~A~~~g~~i~a~I~g~~~~~~~~~~~~~~~~~~~~~~a~~~al~~Agl~~~dId~i~ 303 (424)
T smart00825 224 FDADADGYVRGEGVGVVVLKRLSDALRDGDPILAVIRGSAVNQDGRSNGLTAPSGPAQARLIRQALARAGVDPADVDYVE 303 (424)
T ss_pred CCCCCCcccccceEEEEEEccHHHHHHCCCeEEEEEEEEEEeCCCCCCCCCCcCHHHHHHHHHHHHHHhCCCHHHccEEE
Confidence 99999999999999999999999999999999999999999998876544445677788999999999999999999999
Q ss_pred EcCCCCCCCCHHHHHHHHHHhhccc-CCCCceeeccccchhhhHHhHHHHHHHHHHHHHHhCccCCCCCCCCCCCCCCCC
Q 011989 360 AHATSTPLGDTVEATAIRTVFSDHA-TSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLAIHHGVAPLTLNLAKPDPIFNDN 438 (473)
Q Consensus 360 ~hgtgt~~~D~~E~~a~~~~~~~~~-~~~~~~v~s~k~~~Gh~~~AsG~~~li~~~~~l~~~~ipp~~~~~~~~~~~~~~ 438 (473)
+|||||+.+|..|..+++++|+... .+.+++|++.|+++||+.+|+|++++++++++|++++|||++|+++|+|.++++
T Consensus 304 ~h~tgt~~~d~~E~~al~~~~~~~~~~~~~~~v~s~k~~~Gh~~~AsG~~~l~~~~~~l~~~~ip~~~~~~~~~~~~~~~ 383 (424)
T smart00825 304 AHGTGTPLGDPIEAEALAAVFGQGRPRDGPLLLGSVKSNIGHLEAAAGVAGLIKVVLALRHGTIPPTLHFETPNPHIDLE 383 (424)
T ss_pred eeCCCCCCCCHHHHHHHHHHHhccCCCCCceEEeccccccCCcccchhHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcc
Confidence 9999999999999999999998642 235689999999999999999999999999999999999999999999998876
Q ss_pred ----CCccccCCCC----CCcEEEEeccccccceeeEEEeec
Q 011989 439 ----FMPLTASKDM----PISAALSNSFGFGGTNASLLFTKC 472 (473)
Q Consensus 439 ----~~~~~~~~~~----~~~~~l~~s~g~gG~~~~~vl~~~ 472 (473)
+++ .+.+.+ .++.+++|+|||||+|+|+||++|
T Consensus 384 ~~~~~~~-~~~~~~~~~~~~~~~l~~s~gfgg~n~~lvl~~~ 424 (424)
T smart00825 384 ESPLRVP-TEATPWPATGRPRRAGVSSFGFGGTNAHVILEEA 424 (424)
T ss_pred cCceEcc-CCCcCCCCCCCccEEEEeccCCCCceEEEEEecC
Confidence 333 333332 589999999999999999999986
|
The structure of beta-ketoacyl synthase is similar to that of the thiolase family and also chalcone synthase. The active site of beta-ketoacyl synthase is located between the N and C-terminal domains. |
| >cd00833 PKS polyketide synthases (PKSs) polymerize simple fatty acids into a large variety of different products, called polyketides, by successive decarboxylating Claisen condensations | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-64 Score=516.54 Aligned_cols=411 Identities=28% Similarity=0.477 Sum_probs=352.0
Q ss_pred CceEEEecceecccCCCHHHHHHHHHcCCCceeeCCccccccCCCCccccccccCCcccceeEEecCCCCCCCCCcccC-
Q 011989 39 RRVVVTGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSKVAAVVPCGISSGEFNEDSW- 117 (473)
Q Consensus 39 ~~v~ItG~g~~~p~g~~~~~~~~~l~~G~s~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~~~~- 117 (473)
++|+|||||+++|.|.++++||++|++|++++++++..+|....++.+. .........+++.+++ ...||..+|
T Consensus 1 ~~v~ItG~g~~~p~g~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~g~i~~---~~~~~~~~~~ 75 (421)
T cd00833 1 EPIAIVGMACRFPGAADPDEFWENLLEGRDAISEIPEDRWDADGYYPDP--GKPGKTYTRRGGFLDD---VDAFDAAFFG 75 (421)
T ss_pred CCEEEEceeeECCCCCCHHHHHHHHHcCCCcCcCCChhHcCcccccccc--ccCCCcceecceecCC---cccCCHhHcC
Confidence 4799999999999999999999999999999999988776654443111 1123345556777764 334777777
Q ss_pred CCchhhhccCHHHHHHHHHHHHHHHHcCCCCCCCCCCCceeEEEecCCCChhhHHHHHHHHHHhccccCCCcchhhhhhh
Q 011989 118 LNSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILIN 197 (473)
Q Consensus 118 ~~~~~~~~~~~~~~la~~aa~~Al~dAgl~~~~~~~~~~~gvivg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (473)
+++++.+.+++.++|+++|+++||+|||+++.++ +..+++|++|+..+.+ ..+..+....++++.++....+
T Consensus 76 ~~~~~~~~~~~~~~l~~~aa~~AL~dAgl~~~~~-~~~~~gv~~g~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~ 147 (421)
T cd00833 76 ISPREAEAMDPQQRLLLEVAWEALEDAGYSPESL-AGSRTGVFVGASSSDY-------LELLARDPDEIDAYAATGTSRA 147 (421)
T ss_pred CCHHHHHhcCHHHHHHHHHHHHHHHHcCCCchhc-CCCCceEEeCcCHHHH-------HHHHhhcccccCcccccCcchH
Confidence 8899999999999999999999999999988766 4789999999976522 2222333445788888888889
Q ss_pred HHHHHHHHhcCCCCCeeeecCCcchHHHHHHHHHHHHHcCCCCEEEEeecCCCcChHHHHHHhhhhccccccCCCCCCCC
Q 011989 198 MASGHVSMKYGFQGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEAS 277 (473)
Q Consensus 198 ~~a~~ia~~lgl~Gp~~~v~~acasg~~Al~~A~~~I~~G~~d~vlv~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (473)
..+++++..+|++||+++++++|+|++.||..|+++|++|++|++||+|+|.+.++..+..+...+.++ +...+
T Consensus 148 ~~a~~i~~~~gl~g~~~~v~~acas~~~Al~~A~~~I~~G~~d~~lvgg~~~~~~~~~~~~~~~~~~l~------~~~~~ 221 (421)
T cd00833 148 FLANRISYFFDLRGPSLTVDTACSSSLVALHLACQSLRSGECDLALVGGVNLILSPDMFVGFSKAGMLS------PDGRC 221 (421)
T ss_pred HHHHHHHHHcCCCCCceeeccHhHHHHHHHHHHHHHHHcCCCCeeEEeeeeccCCHHHHHHHhhCCCCC------CCCCC
Confidence 999999999999999999999999999999999999999999999999999988888888887777765 34679
Q ss_pred cCccCCCCceeeccceEEEEEccchHHHhcCCeEEEEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccE
Q 011989 278 RPFDCGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDY 357 (473)
Q Consensus 278 ~pfd~~~~G~~~geGaaavvL~~~~~A~~~g~~~~a~i~g~~~~~d~~~~~~~~~~~~~~~~a~~~al~~agl~~~dId~ 357 (473)
+||+.+++|+++|||++++||++++.|++++.++|++|.|++.++++.+.....+...+..+++++||+++|++++||||
T Consensus 222 ~pf~~~~~g~~~geGAaalvL~~~~~A~~~g~~~~a~i~g~~~~~~~~~~~~~~p~~~~~~~a~~~al~~Agi~~~did~ 301 (421)
T cd00833 222 RPFDADADGYVRGEGVGVVVLKRLSDALRDGDRIYAVIRGSAVNQDGRTKGITAPSGEAQAALIRRAYARAGVDPSDIDY 301 (421)
T ss_pred CCCCCCCCCeeeeceEEEEEEeeHHHHHHCCCeEEEEEEEEEEcCCCCCCCCcCCCHHHHHHHHHHHHHHhCCCHHHCcE
Confidence 99999999999999999999999999999999999999999999998765555556788899999999999999999999
Q ss_pred EEEcCCCCCCCCHHHHHHHHHHhhcccC-CCCceeeccccchhhhHHhHHHHHHHHHHHHHHhCccCCCCCCCCCCCCCC
Q 011989 358 VNAHATSTPLGDTVEATAIRTVFSDHAT-SGSLAFSSTKGAIGHLLGAAGAVEAIFAVLAIHHGVAPLTLNLAKPDPIFN 436 (473)
Q Consensus 358 v~~hgtgt~~~D~~E~~a~~~~~~~~~~-~~~~~v~s~k~~~Gh~~~AsG~~~li~~~~~l~~~~ipp~~~~~~~~~~~~ 436 (473)
|++|||||+.+|..|..++.++|+.... ..++++++.|+++||+++|+|++++++++++|+++.+||++|+++++|.++
T Consensus 302 i~~hgtgt~~~D~~E~~al~~~f~~~~~~~~~~~v~s~k~~~Gh~~~aag~~~l~~~~~~l~~~~ip~~~~~~~~~~~~~ 381 (421)
T cd00833 302 VEAHGTGTPLGDPIEVEALAKVFGGSRSADQPLLIGSVKSNIGHLEAAAGLAGLIKVVLALEHGVIPPNLHFETPNPKID 381 (421)
T ss_pred EEeeCCCCCCCCHHHHHHHHHHHhccCCCCCceeeecCcCccccchhhhHHHHHHHHHHHHhcCCcCCcCCCCCCCCCCC
Confidence 9999999999999999999999986421 246899999999999999999999999999999999999999999999987
Q ss_pred CC----CCccccCCCC----CCcEEEEeccccccceeeEEE
Q 011989 437 DN----FMPLTASKDM----PISAALSNSFGFGGTNASLLF 469 (473)
Q Consensus 437 ~~----~~~~~~~~~~----~~~~~l~~s~g~gG~~~~~vl 469 (473)
++ +++ .+.+.+ .++.+++|+|||||+|+|+||
T Consensus 382 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~sfgfgg~n~~~vl 421 (421)
T cd00833 382 FEESPLRVP-TEARPWPAPAGPRRAGVSSFGFGGTNAHVIL 421 (421)
T ss_pred cccCCeEee-CCCccCCCCCCCeEEEEeCcCCCCceeEEeC
Confidence 53 333 333333 379999999999999999986
|
PKSs can be divided into 2 groups, modular type I PKSs consisting of one or more large multifunctional proteins and iterative type II PKSs, complexes of several monofunctional subunits. |
| >PRK09185 3-oxoacyl-(acyl carrier protein) synthase I; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-64 Score=504.84 Aligned_cols=387 Identities=32% Similarity=0.492 Sum_probs=326.6
Q ss_pred CCceEEEecceecccCCCHHHHHHHHHcCC-CceeeCCccccccCCCCccccccccCCcccceeEEecCCCCCCCCCccc
Q 011989 38 LRRVVVTGIGMVTPLGCGAETTWRRLIVGE-CGIREITPEDLKMGNFDRETQLHAFGQLTSKVAAVVPCGISSGEFNEDS 116 (473)
Q Consensus 38 ~~~v~ItG~g~~~p~g~~~~~~~~~l~~G~-s~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~~~ 116 (473)
|++|||||+|+++|.|.++++||++|++|+ ++|++++.+. . .++. ..+.+++ |+. .
T Consensus 1 m~~VvITG~G~vsp~G~~~~~~~~~l~~G~~sgi~~~~~~~--------------~-~~~~-~~g~~~~------~~~-~ 57 (392)
T PRK09185 1 MTPVYISAFGATSALGRGLDAILAALRAGRASGMRPCDFWL--------------V-DLPT-WVGEVVG------VEL-P 57 (392)
T ss_pred CCcEEEEeeEEECCCcCCHHHHHHHHHcCCCCCeEeCcccc--------------c-cCCe-EEEEecC------ccc-c
Confidence 568999999999999999999999999999 9999987543 1 1222 2344554 442 3
Q ss_pred CCCchhhhccCHHHHHHHHHHHH---HHHHcCCCCCCCCCCCceeEEEecCCCChhhHHHHHHHHHHhccccCCCcchhh
Q 011989 117 WLNSKDHRSIARFIAYALCAADE---ALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPR 193 (473)
Q Consensus 117 ~~~~~~~~~~~~~~~la~~aa~~---Al~dAgl~~~~~~~~~~~gvivg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (473)
+++.+..+.+++..+++..|+.+ |+.|++- +. +.+|+||++|++.+.....+.++..+.........++.++.
T Consensus 58 ~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~---~~-~~~r~gv~~Gt~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (392)
T PRK09185 58 ALPAALAAFDCRNNRLALLALQQIEPAVEAAIA---RY-GADRIGVVLGTSTSGILEGELAYRRRDPAHGALPADYHYAQ 133 (392)
T ss_pred cCCHHHHhcCCHHHHHHHHHHHHHHHHHHhhcc---cC-CCCcEEEEEeeCCccHHHHHHHHHHHhhccCCCCCchhhhh
Confidence 35556667778877877776666 5666551 22 46799999999999988877766654432222234566778
Q ss_pred hhhhHHHHHHHHhcCCCCCeeeecCCcchHHHHHHHHHHHHHcCCCCEEEEeecCCCcChHHHHHHhhhhccccccCCCC
Q 011989 194 ILINMASGHVSMKYGFQGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTP 273 (473)
Q Consensus 194 ~~~~~~a~~ia~~lgl~Gp~~~v~~acasg~~Al~~A~~~I~~G~~d~vlv~g~d~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (473)
+..+.++++|+..||++||+++++++|+|++.||.+|+++|++|++|+|||+|+|. ..+..+..|..++.++
T Consensus 134 ~~~~~~a~~ia~~lgl~Gp~~~i~~acas~~~Al~~A~~~I~~G~~d~vlvgg~d~-~~~~~~~~~~~~~~l~------- 205 (392)
T PRK09185 134 QELGSLADFLRAYLGLSGPAYTISTACSSSAKVFASARRLLEAGLCDAAIVGGVDS-LCRLTLNGFNSLESLS------- 205 (392)
T ss_pred hcccHHHHHHHHHhCCCCCcccccChhHHHHHHHHHHHHHHHcCCCCEEEEeeccc-cChHHHHHHHhccccC-------
Confidence 88899999999999999999999999999999999999999999999999999997 4555566676666654
Q ss_pred CCCCcCccCCCCceeeccceEEEEEccchHHHhcCCeEEEEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHHcCCCCC
Q 011989 274 QEASRPFDCGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSH 353 (473)
Q Consensus 274 ~~~~~pfd~~~~G~~~geGaaavvL~~~~~A~~~g~~~~a~i~g~~~~~d~~~~~~~~~~~~~~~~a~~~al~~agl~~~ 353 (473)
...|+|||.+++|+++|||++++||+++ ++.. ++|.|++.++|+.+...|++...+..++++++|+++|++++
T Consensus 206 ~~~~~Pfd~~~~G~~~gEGaa~vVLe~~-----~~~~--~~I~g~g~~~d~~~~~~~~~~~~~~~~a~~~Al~~Agl~~~ 278 (392)
T PRK09185 206 PQPCRPFSANRDGINIGEAAAFFLLERE-----DDAA--VALLGVGESSDAHHMSAPHPEGLGAILAMQQALADAGLAPA 278 (392)
T ss_pred CCccCCCcCCCCccceeceEEEEEEEEc-----CCCc--EEEEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHHcCCCHH
Confidence 2679999999999999999999999986 2233 57999999999998888888888889999999999999999
Q ss_pred CccEEEEcCCCCCCCCHHHHHHHHHHhhcccCCCCceeeccccchhhhHHhHHHHHHHHHHHHHHhCccCCCCCCCCCCC
Q 011989 354 QVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLAIHHGVAPLTLNLAKPDP 433 (473)
Q Consensus 354 dId~v~~hgtgt~~~D~~E~~a~~~~~~~~~~~~~~~v~s~k~~~Gh~~~AsG~~~li~~~~~l~~~~ipp~~~~~~~~~ 433 (473)
|||||++|||||+.+|..|..++.++|+.. +|++++|+++||+++|||++++++++++|+++++||++|+++++|
T Consensus 279 dId~v~~hgtgt~~~D~~E~~al~~~f~~~-----~pv~s~K~~~Gh~~~AaG~~~l~~~~~~l~~~~ip~~~~~~~~~~ 353 (392)
T PRK09185 279 DIGYINLHGTATPLNDAMESRAVAAVFGDG-----VPCSSTKGLTGHTLGAAGAVEAAICWLALRHGLPPHGWNTGQPDP 353 (392)
T ss_pred HccEEEeCCCCCcCCCHHHHHHHHHHhCCC-----CceeCCCcccccChhhcchHHHHHHHHHHhcCCCCCCCCCCCCCC
Confidence 999999999999999999999999999853 689999999999999999999999999999999999999999999
Q ss_pred CCCCCCCccccCCCCCCcEEEEeccccccceeeEEEeec
Q 011989 434 IFNDNFMPLTASKDMPISAALSNSFGFGGTNASLLFTKC 472 (473)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~l~~s~g~gG~~~~~vl~~~ 472 (473)
.+++++++ .+++..+++++++|||||||+|+|+||++.
T Consensus 354 ~~~~~~~~-~~~~~~~~~~~l~~s~gfgG~n~~lvl~~~ 391 (392)
T PRK09185 354 ALPPLYLV-ENAQALAIRYVLSNSFAFGGNNCSLIFGRA 391 (392)
T ss_pred CCCccccC-CCCccCCCCEEEEeCccCCceeEEEEEEeC
Confidence 99988877 566667799999999999999999999975
|
|
| >PRK06519 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-62 Score=492.50 Aligned_cols=376 Identities=22% Similarity=0.285 Sum_probs=311.9
Q ss_pred CCCceEEEecceecccCCCHHHHHHHHHcCCCceeeCCccccccCCCCccccccccCCcccceeEEecCCCCCCCCCccc
Q 011989 37 PLRRVVVTGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSKVAAVVPCGISSGEFNEDS 116 (473)
Q Consensus 37 ~~~~v~ItG~g~~~p~g~~~~~~~~~l~~G~s~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~~~ 116 (473)
..++|||||||+++|.|.++++||++|++|+++ ..++..+| ..++.. .+.+ ++.+.
T Consensus 4 ~~~rVvITGiG~vsp~G~~~e~~w~aL~~G~sg-~~~~~~~~--------------~~~~~~---~~~~------~~~~~ 59 (398)
T PRK06519 4 QPNDVVITGIGLVSSLGEGLDAHWNALSAGRPQ-PNVDTETF--------------APYPVH---PLPE------IDWSQ 59 (398)
T ss_pred CCCCEEEEcceEECCCCCCHHHHHHHHHcCCCC-CCCCcccc--------------cCcCcc---cccc------cChhh
Confidence 357899999999999999999999999999997 22222111 011111 1111 33334
Q ss_pred CCCch-hhhccCHHHHHHHHHHHHHHHHcCCCCCCCCCCCceeEEEecCCCChhhHHHH------------HHHHHHhcc
Q 011989 117 WLNSK-DHRSIARFIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDA------------AQMICEKRL 183 (473)
Q Consensus 117 ~~~~~-~~~~~~~~~~la~~aa~~Al~dAgl~~~~~~~~~~~gvivg~~~g~~~~~~~~------------~~~~~~~~~ 183 (473)
+++++ ..+++++.++|++.|+++||+|||++.... +.+++||++|++.+......+. ...+.+.+.
T Consensus 60 ~~~~~~~~r~~~r~~~~a~~Aa~~Al~dAGl~~~~~-~~~r~GvivGt~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (398)
T PRK06519 60 QIPKRGDQRQMETWQRLGTYAAGLALDDAGIKGNEE-LLSTMDMIVAAGGGERDIAVDTAILNEARKRNDRGVLLNERLM 138 (398)
T ss_pred cCCchhhhhccCHHHHHHHHHHHHHHHHcCCCCCCC-CccceEEEEEeCCCchhHHHhhhhhhcccchhHHHHHHHhcCC
Confidence 45555 678899999999999999999999965433 4679999999999887665432 234445566
Q ss_pred ccCCCcchhhhhhhHHHHHHHHhcCCCCCeeeecCCcchHHHHHHHHHHHHHcCCCCEEEEeecCCCcChHHHHHHhhhh
Q 011989 184 RRLSPFFIPRILINMASGHVSMKYGFQGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSR 263 (473)
Q Consensus 184 ~~~~~~~~~~~~~~~~a~~ia~~lgl~Gp~~~v~~acasg~~Al~~A~~~I~~G~~d~vlv~g~d~~~~~~~~~~~~~~~ 263 (473)
+.++|+.++.+++|.++++|+..||++||+++++++|+|++.||.+|+++|++|++|++||+|+|..+++..+..|...+
T Consensus 139 ~~~~p~~~~~~~~n~~a~~is~~~gl~Gp~~ti~~acaSg~~Ai~~A~~~I~~G~~d~~lvGG~d~~~~~~~~~~~~~~~ 218 (398)
T PRK06519 139 TELRPTLFLAQLSNLLAGNISIVHKVTGSSRTFMGEESAGVSAIEIAFARIASGQSDHALVGGAYNAERPDMLLLYELGG 218 (398)
T ss_pred CccChhhhhhhhhhHHHHHHHHHhCCCCccccccCCccHHHHHHHHHHHHHHcCCCCEEEEeeeccccCHHHHHHHHHcC
Confidence 77899999999999999999999999999999999999999999999999999999999999999988888888888888
Q ss_pred ccccccCCCCCCCCcC-ccC---CCCceeeccceEEEEEccchHHHhcCCeEEEEEEEEEEecCCCCCCCCCCChHHHHH
Q 011989 264 ALTTKYNGTPQEASRP-FDC---GRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAIL 339 (473)
Q Consensus 264 ~~~~~~~~~~~~~~~p-fd~---~~~G~~~geGaaavvL~~~~~A~~~g~~~~a~i~g~~~~~d~~~~~~~~~~~~~~~~ 339 (473)
.++. ..++| ||. +++|+++|||+++||||++++|+++|.+||++|.|++... . +. ...++.+
T Consensus 219 ~ls~-------~~~~p~~d~~~~~r~G~v~GEGAa~lvLE~~~~A~~Rga~i~AeI~G~~~d~--~----~~-~~~~~~~ 284 (398)
T PRK06519 219 LLLK-------GGWAPVWSRGGEDGGGFILGSGGAFLVLESREHAEARGARPYARISGVESDR--A----RR-APGDLEA 284 (398)
T ss_pred ccCC-------CCCCchhccCccCCCCeeeeceEEEEEEeeHHHHHhCCCceEEEEEEEeecC--C----CC-ChHHHHH
Confidence 7763 24455 555 6999999999999999999999999999999999996432 2 11 3357789
Q ss_pred HHHHHHHHcCCCCCCccEEEEcCCCCCCCCHHHHHHHHHHhhcccCCCCceeeccccchhhhHHhHHHHHHHHHHHHHHh
Q 011989 340 AMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLAIHH 419 (473)
Q Consensus 340 a~~~al~~agl~~~dId~v~~hgtgt~~~D~~E~~a~~~~~~~~~~~~~~~v~s~k~~~Gh~~~AsG~~~li~~~~~l~~ 419 (473)
+|++||++||+ ++|||||++|||||+.+|..|..+|+++|+ +||+++|+++||+++|+|+++++.++++|++
T Consensus 285 am~~AL~~Agl-~~~IdyI~ahgtgT~~~D~~E~~Ai~~~f~-------~pvsS~Ks~~GH~l~AAGa~e~i~~~lal~~ 356 (398)
T PRK06519 285 SLERLLKPAGG-LAAPTAVISGATGAHPATAEEKAALEAALA-------GPVRGIGTLFGHTMEAQFPLGLALAALSVSK 356 (398)
T ss_pred HHHHHHHHCCC-cccCCEEEeCCCCCCCccHHHHHHHHHHcC-------CCccccchhhccchHHHHHHHHHHHHHHHhc
Confidence 99999999999 899999999999999999999999999994 4799999999999999999999999999999
Q ss_pred CccCCCCCCCCCCCCCCCCCCccccCCCCCCcEEEEeccccccceeeEEEee
Q 011989 420 GVAPLTLNLAKPDPIFNDNFMPLTASKDMPISAALSNSFGFGGTNASLLFTK 471 (473)
Q Consensus 420 ~~ipp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~g~gG~~~~~vl~~ 471 (473)
+++||++|++ |+ .++..+++.++++++|++|.-...+++.
T Consensus 357 g~vpp~~n~~---~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (398)
T PRK06519 357 GALFPPFDAS---GE---------KPMSGAAREAVVTTVGHWRGEGMALVEA 396 (398)
T ss_pred CccCCCCCCC---cc---------cCccccccEEEEEeeccCCcceeEEEEe
Confidence 9999999972 21 3355678999999999999876666654
|
|
| >KOG1202 consensus Animal-type fatty acid synthase and related proteins [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-55 Score=455.48 Aligned_cols=397 Identities=23% Similarity=0.363 Sum_probs=347.8
Q ss_pred CCCceEEEecceecccCCCHHHHHHHHHcCCCceeeCCccccccCCCCccccccccCCcccceeEEecCCCCCCCCCccc
Q 011989 37 PLRRVVVTGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSKVAAVVPCGISSGEFNEDS 116 (473)
Q Consensus 37 ~~~~v~ItG~g~~~p~g~~~~~~~~~l~~G~s~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~~~ 116 (473)
..+.|||+||...+|...++++||.+|++|.+-++.-+ .+|..+.| ++|.+.+ ++.+ ...||..+
T Consensus 9 ~~edIvIsG~sgklPes~nv~eF~~nLl~g~DmVtdd~-rrW~~G~y----------gLP~r~g-KlKd---L~kFDa~f 73 (2376)
T KOG1202|consen 9 KQEDIVISGMSGKLPESDNVKEFGDNLLAGVDMVTDDP-RRWEAGLY----------GLPKRSG-KLKD---LNKFDAGF 73 (2376)
T ss_pred cCCcEEEeccCCCCCCcccHHHHhhhhhcccccccCCc-cccccccc----------CCchhhc-chhh---hhhhcccc
Confidence 36789999999999999999999999999998776543 46766644 3333332 2222 34599999
Q ss_pred C-CCchhhhccCHHHHHHHHHHHHHHHHcCCCCCCCCCCCceeEEEecCCCChhhHHHHHHHHHHhccccCCCcchhhhh
Q 011989 117 W-LNSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRIL 195 (473)
Q Consensus 117 ~-~~~~~~~~~~~~~~la~~aa~~Al~dAgl~~~~~~~~~~~gvivg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (473)
| ..+++...|||+.+|.+++.+||+-||||.|.++. ..++||++|.+........ .+.+..+..+.+.+..
T Consensus 74 f~vh~KQa~~MDPq~RlLLE~t~EAivDaGiNP~~LR-Gs~tGv~vg~s~seTs~~~-------~~dp~t~~Gy~mtgc~ 145 (2376)
T KOG1202|consen 74 FGVHPKQANTMDPQLRLLLEATWEAIVDAGINPDDLR-GSRTGVFVGVSGSETSGAL-------SQDPDTVNGYSMTGCV 145 (2376)
T ss_pred cCcCcccccccCHHHHHHHHHHHHHHHhCCCChhhcC-cccceeEEeecCccccccc-------cCCCccccceeecccH
Confidence 9 89999999999999999999999999999999984 9999999998876554322 2344556777788889
Q ss_pred hhHHHHHHHHhcCCCCCeeeecCCcchHHHHHHHHHHHHHcCCCCEEEEeecCCCcChHHHHHHhhhhccccccCCCCCC
Q 011989 196 INMASGHVSMKYGFQGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQE 275 (473)
Q Consensus 196 ~~~~a~~ia~~lgl~Gp~~~v~~acasg~~Al~~A~~~I~~G~~d~vlv~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (473)
..+.++||++.|+++||++.++++|+|++.||..|.+.|+.|+||.+||.|+...+.|.....|-++++++ +++
T Consensus 146 raMfaNRiSytFDfqGPS~s~DtacsSsl~al~~a~~~~r~gqcd~AiVaG~~liLkPt~slQFlRLgmls------~dG 219 (2376)
T KOG1202|consen 146 RAMFANRISYTFDFQGPSFSVDTACSSSLMALQNAFQDIRSGQCDAAIVAGANLILKPTTSLQFLRLGMLS------PDG 219 (2376)
T ss_pred HHHhhcceeEEEeccCCchhhhhhhHHHHHHHHHHHHhhhccCCchhhhcccceEeccchhhHHHHhcCcC------CCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998 679
Q ss_pred CCcCccCCCCceeeccceEEEEEccchHHHhcCCeEEEEEEEEEEecCCC---CCCCCCCChHHHHHHHHHHHHHcCCCC
Q 011989 276 ASRPFDCGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAH---HITQPHIDGKGAILAMTRALKQSGLQS 352 (473)
Q Consensus 276 ~~~pfd~~~~G~~~geGaaavvL~~~~~A~~~g~~~~a~i~g~~~~~d~~---~~~~~~~~~~~~~~a~~~al~~agl~~ 352 (473)
.|+.||...+||+.+||+++++|.+...|++ +||.|.-...+.||+ +++.| .+.-+.+.+++.|.++|+.|
T Consensus 220 sCkaFDeagnGY~Rseg~~avllqrk~~ArR----vYAtilnartNTDGfKEqGvTfP--~G~~Q~qLi~e~Yse~Gl~P 293 (2376)
T KOG1202|consen 220 SCKAFDEAGNGYCRSEGVVAVLLQRKSLARR----VYATILNARTNTDGFKEQGVTFP--SGDMQEQLIRETYSEAGLNP 293 (2376)
T ss_pred cccchhccCCceeecCceEEEEEehhHHHHH----HHHHhhccccCCCchhhcCccCC--CcHHHHHHHHHHHHhcCCCc
Confidence 9999999999999999999999999888865 588888889999997 35555 46677899999999999999
Q ss_pred CCccEEEEcCCCCCCCCHHHHHHHHHHhhcccCCCCceeeccccchhhhHHhHHHHHHHHHHHHHHhCccCCCCCCCCCC
Q 011989 353 HQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLAIHHGVAPLTLNLAKPD 432 (473)
Q Consensus 353 ~dId~v~~hgtgt~~~D~~E~~a~~~~~~~~~~~~~~~v~s~k~~~Gh~~~AsG~~~li~~~~~l~~~~ipp~~~~~~~~ 432 (473)
+++-|||+|||||+.||+-|+.+|.++|+.. +..++.|+++|++.||++-|||+..+.|.+++|++|.|||++|++.|+
T Consensus 294 ~sv~YvEAHGtGTkVGDpQEaN~it~~fC~~-Rt~pLLIGSvKSNMGHaEPASGv~alaKillsmE~glip~NLHy~tPN 372 (2376)
T KOG1202|consen 294 ESVVYVEAHGTGTKVGDPQEANGITRFFCAT-RTTPLLIGSVKSNMGHAEPASGVCALAKILLSMEEGLIPPNLHYNTPN 372 (2376)
T ss_pred ccEEEEEeccCCCCCCChHHhhhHHHHHhhc-CCCceEeeeccccCCCCCccchHHHHHHHHHHHHhCcCCCccccCCCC
Confidence 9999999999999999999999999999973 446888999999999999999999999999999999999999999999
Q ss_pred CCCCC------CCCccccCCCCCCcEEEEeccccccceeeEEEee
Q 011989 433 PIFND------NFMPLTASKDMPISAALSNSFGFGGTNASLLFTK 471 (473)
Q Consensus 433 ~~~~~------~~~~~~~~~~~~~~~~l~~s~g~gG~~~~~vl~~ 471 (473)
|+++- ..| .++.+++-..+.+|||||||.|+|+||+.
T Consensus 373 p~ip~L~dGrLkVV--d~~lp~~GGivGiNSFGFGGsN~HviLks 415 (2376)
T KOG1202|consen 373 PEIPALVDGRLKVV--DRPLPWRGGIVGINSFGFGGSNAHVILKS 415 (2376)
T ss_pred CCcchhccceeEEe--cCCCCccCceeeeeccccCCCceeEEecc
Confidence 98742 233 35566677889999999999999999975
|
|
| >PRK06147 3-oxoacyl-(acyl carrier protein) synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-41 Score=337.04 Aligned_cols=338 Identities=19% Similarity=0.194 Sum_probs=257.8
Q ss_pred CCCceEEEecceecccCCCHHHHHHHHHcCCCceeeCCccccccCCCCccccccccCCcccceeEEecCCCCCCCCCccc
Q 011989 37 PLRRVVVTGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSKVAAVVPCGISSGEFNEDS 116 (473)
Q Consensus 37 ~~~~v~ItG~g~~~p~g~~~~~~~~~l~~G~s~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~~~ 116 (473)
||++|+|+|+|+++|+|.+.++.|++|++|.+...+....... ........ .
T Consensus 1 ~~~~v~I~~~g~vs~lG~~~~~~~aa~ragi~~~~~~~~~~~~--------------~~~~i~~~--------------~ 52 (348)
T PRK06147 1 MMRALAIVGSGMVTAVGLDAPSSCAAIRARLDNFQETRFIDPP--------------GGEWLIGA--------------P 52 (348)
T ss_pred CCCceEEEecceeecCcCCHHHHHHHHHcccccccccccccCC--------------CCCceEee--------------c
Confidence 4678999999999999999999999999998766433321100 00000000 0
Q ss_pred CCCchhhhccCHHHHHHHHHHHHHHHHcC-CCCCCCCCCCceeEEEecCCCChhhHHHHHHHHHHhccccCCCcchhhhh
Q 011989 117 WLNSKDHRSIARFIAYALCAADEALHDAK-WLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRIL 195 (473)
Q Consensus 117 ~~~~~~~~~~~~~~~la~~aa~~Al~dAg-l~~~~~~~~~~~gvivg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (473)
.+..+......+..+|+..|+++||++++ ++ .+++.++++.+... ....+..+
T Consensus 53 ~~~~~~~~~~~r~~~La~~Al~~aL~~a~~~~------~~~i~lil~~~~~~----------------~~~~~~~~---- 106 (348)
T PRK06147 53 VPLPPPWRGPERLAEMAAPAIAEALEGLPALD------ASEAPLLLCVAEEE----------------RPGRPPDL---- 106 (348)
T ss_pred CcCCcccCchHHHHHHHHHHHHHHHHhccccc------ccCCcEEEEeCchh----------------cCCCCcch----
Confidence 11111223345788999999999999998 43 34457777653310 00111111
Q ss_pred hhHHHHHHHHhcCC--CCCeeeecCCcchHHHHHHHHHHHHHcCCCCEEEEeecCCCcChHHHHHHhhhhccccccCCCC
Q 011989 196 INMASGHVSMKYGF--QGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTP 273 (473)
Q Consensus 196 ~~~~a~~ia~~lgl--~Gp~~~v~~acasg~~Al~~A~~~I~~G~~d~vlv~g~d~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (473)
.+..+..++..+|+ ++++++|.++|+|++.||.+|+++|+.|++|.+||+|+|.++.+..+..|...+.+..
T Consensus 107 ~~~~~~~~~~~lG~~~~~~~~~i~~~casg~~Al~~A~~~i~~G~~~~~lvgg~d~~~~~~~~~~~~~~~~l~~------ 180 (348)
T PRK06147 107 EERLLRELEARLGLRLEPGSAVIARGRVSGAVALAQARRLIAAGGCPRVLVAGVDSLLTGPTLAHYEARDRLLT------ 180 (348)
T ss_pred HHHHHHHHHHHhCCCCCCCcccccccchHHHHHHHHHHHHHHcCCCCEEEEEeeccccCHHHHHHHHHhhccCC------
Confidence 22335567777787 5788999999999999999999999999999999999999888777777766655431
Q ss_pred CCCCcCccCCCCceeeccceEEEEEccchHHHhcCCeEEEEEEEEEEecCCCCCCC-CCCChHHHHHHHHHHHHHcCCCC
Q 011989 274 QEASRPFDCGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQ-PHIDGKGAILAMTRALKQSGLQS 352 (473)
Q Consensus 274 ~~~~~pfd~~~~G~~~geGaaavvL~~~~~A~~~g~~~~a~i~g~~~~~d~~~~~~-~~~~~~~~~~a~~~al~~agl~~ 352 (473)
+.+++|+++|||++++||++.++|++++.++|+ .|++...++.+... +...+.++.++++++|+++|+++
T Consensus 181 -------~~~~~G~v~GEGA~a~vLe~~~~A~~rga~i~a--~g~~~~~~~~~~~~~~p~~g~gl~~ai~~AL~~agl~~ 251 (348)
T PRK06147 181 -------SQNSNGFIPGEAAAAVLLGRPAGGEAPGLPLLG--LGLGREPAPVGESEDLPLRGDGLTQAIRAALAEAGCGL 251 (348)
T ss_pred -------CCCCCceeeeceEEEEEEccHhhhhcCCCceEE--EEEeecCCCcccCCCCCCChHHHHHHHHHHHHHcCCCH
Confidence 236899999999999999999999999999998 66666666654332 22367889999999999999999
Q ss_pred CCccEEEEcCCCCCCCCHHHHHHHHHHhhcccCCCCceeeccccchhhhHHhHHHHHHHHHHHHHHhCccCCCCCCCCCC
Q 011989 353 HQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLAIHHGVAPLTLNLAKPD 432 (473)
Q Consensus 353 ~dId~v~~hgtgt~~~D~~E~~a~~~~~~~~~~~~~~~v~s~k~~~Gh~~~AsG~~~li~~~~~l~~~~ipp~~~~~~~~ 432 (473)
+|||||+.|++||+.+|..|..++.++|+... ...+++++|+++||+++|+|+++++.++++|+++++|+.
T Consensus 252 ~dId~v~ah~~gt~~~d~~e~~A~~~~f~~~~--~~~~~~~~k~~~Gh~~aAaG~~~~~~a~~~~~~g~~~g~------- 322 (348)
T PRK06147 252 EDMDYRIADLNGEQYRFKEAALAEMRLFRVRK--EFFDLWHPAECIGEIGAAIGPALLGVALAASRKGYGPGP------- 322 (348)
T ss_pred HHCCEEEcCCCCCccchHHHHHHHHHHhhhcc--CCCceecchHhhcchHHHHHHHHHHHHHHHHHcCcCCCC-------
Confidence 99999999999999999999999999998643 357899999999999999999999999999999998742
Q ss_pred CCCCCCCCccccCCCCCCcEEEEeccccccceeeEEEee
Q 011989 433 PIFNDNFMPLTASKDMPISAALSNSFGFGGTNASLLFTK 471 (473)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~~l~~s~g~gG~~~~~vl~~ 471 (473)
.+|+.+..-.|.-.++||++
T Consensus 323 -------------------~~L~~s~~d~g~r~a~~l~~ 342 (348)
T PRK06147 323 -------------------NVLCHLSDDDGARAALVLEY 342 (348)
T ss_pred -------------------cEEEEecCCCCceEEEEEec
Confidence 35556666677777777764
|
|
| >cd00825 decarbox_cond_enzymes decarboxylating condensing enzymes; Family of enzymes that catalyze the formation of a new carbon-carbon bond by a decarboxylating Claisen-like condensation reaction | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-40 Score=329.71 Aligned_cols=322 Identities=34% Similarity=0.511 Sum_probs=272.3
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCceeEEEecCCCChhhHHHHHHHHHHhccccCCCcchhhhhhhHHHHHHHHhcC
Q 011989 129 FIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYG 208 (473)
Q Consensus 129 ~~~la~~aa~~Al~dAgl~~~~~~~~~~~gvivg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lg 208 (473)
.++|+++|+++||++||+++... ..+..+|+++++.+..... .........+.|+.+.+.+.+..+++|+..+|
T Consensus 11 ~~~l~~~aa~~aL~~Ag~~~~~~-~~~i~~ii~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lg 84 (332)
T cd00825 11 VSILGFEAAERAIADAGLSREYQ-KNPIVGVVVGTGGGSPRFQ-----VFGADAMRAVGPYVVTKAMFPGASGQIATPLG 84 (332)
T ss_pred HHHHHHHHHHHHHHHcCCCcccc-CCCCEEEEEEeCCccHHHH-----hhhhccccccCcchhhcccchHHHHHHHHHhC
Confidence 67899999999999999973321 2344599999887665322 12233445678888888888999999999999
Q ss_pred CCCCeeeecCCcchHHHHHHHHHHHHHcCCCCEEEEeecCCCcChHHHHHHhhhhccccccCCCCCCCCcCccCCCCcee
Q 011989 209 FQGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDGFV 288 (473)
Q Consensus 209 l~Gp~~~v~~acasg~~Al~~A~~~I~~G~~d~vlv~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pfd~~~~G~~ 288 (473)
++||+++++.+|+|++.||.+|.++|++|++|.+||+++|....+............ .++..++||+...+|++
T Consensus 85 l~g~~~~v~~~cas~~~al~~A~~~i~~g~~~~~Lv~~~d~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~ 158 (332)
T cd00825 85 IHGPAYDVSAACAGSLHALSLAADAVQNGKQDIVLAGGSEELAAPMDCEFDAMGALS------TPEKASRTFDAAADGFV 158 (332)
T ss_pred CCCCccccccHhHHHHHHHHHHHHHHHcCCCCEEEEeccccccCHHHHHHHhhcccc------CCCCCCCCCCCCCCCEE
Confidence 999999999999999999999999999999999999999987766544333222222 25577899999999999
Q ss_pred eccceEEEEEccchHHHhcCCeEEEEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEEEEcCCCCCCC
Q 011989 289 IGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLG 368 (473)
Q Consensus 289 ~geGaaavvL~~~~~A~~~g~~~~a~i~g~~~~~d~~~~~~~~~~~~~~~~a~~~al~~agl~~~dId~v~~hgtgt~~~ 368 (473)
+|||++|+||++.+.|++++.+++++|.+++...++.+...+........++++++|+++|++++|||++++|++|++..
T Consensus 159 ~gdGaaA~vL~~~~~a~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~al~~agl~~~did~~~~h~~~~~~~ 238 (332)
T cd00825 159 FGDGAGALVVEELEHALARGAHIYAEIVGTAATIDGAGMGAFAPSAEGLARAAKEALAVAGLTVWDIDYLVAHGTGTPIG 238 (332)
T ss_pred EEeeEEEEEECcHHHHHHCCCeEEEEEEEEEEccCCCCCCCCCcCHHHHHHHHHHHHHHcCCCHhHCCEEEccCCCCCCC
Confidence 99999999999999999999999999999999888776554455567788999999999999999999999999999999
Q ss_pred CHHHHHHHHHHhhcccCCCCceeeccccchhhhHHhHHHHHHHHHHHHHHhCccCCCCCCCCCCCCCCCCCCccccCCCC
Q 011989 369 DTVEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLAIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDM 448 (473)
Q Consensus 369 D~~E~~a~~~~~~~~~~~~~~~v~s~k~~~Gh~~~AsG~~~li~~~~~l~~~~ipp~~~~~~~~~~~~~~~~~~~~~~~~ 448 (473)
|..|..++...++.. ++++.+.|..+||+.+|++++.+++++++++++.+||++|+.++++ +..++. .+.+..
T Consensus 239 ~~~e~~~~~~~~~~~----~~~~~~~~~~~G~~~aas~~~~l~~~~~~~~~~~~p~~~~~~~~~~--~~~~~~-~~~~~~ 311 (332)
T cd00825 239 DVKELKLLRSEFGDK----SPAVSATKAMTGNLSSAAVVLAVDEAVLMLEHGFIPPSIHIEELDE--AGLNIV-TETTPR 311 (332)
T ss_pred CHHHHHHHHHHhCCC----CceeECCCcccccchhHhHHHHHHHHHHHHhcCccCCCCCCCCCCc--ccCccc-CCCCCC
Confidence 999999998887643 5789999999999999999999999999999999999999999988 334444 345566
Q ss_pred CCcEEEEeccccccceeeEEE
Q 011989 449 PISAALSNSFGFGGTNASLLF 469 (473)
Q Consensus 449 ~~~~~l~~s~g~gG~~~~~vl 469 (473)
+.+.++++++|+||+++++||
T Consensus 312 ~~~~~l~~~~G~Gg~~~~~vl 332 (332)
T cd00825 312 ELRTALLNGFGLGGTNATLVL 332 (332)
T ss_pred CCCEEEEeeecCCCeeEEEeC
Confidence 789999999999999999986
|
Members are involved in the synthesis of fatty acids and polyketides, a diverse group of natural products. Both pathways are an iterative series of additions of small carbon units, usually acetate, to a nascent acyl group. There are 2 classes of decarboxylating condensing enzymes, which can be distinguished by sequence similarity, type of active site residues and type of primer units (acetyl CoA or acyl carrier protein (ACP) linked units). |
| >PF00109 ketoacyl-synt: Beta-ketoacyl synthase, N-terminal domain; InterPro: IPR014030 Beta-ketoacyl-ACP synthase 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-39 Score=309.92 Aligned_cols=250 Identities=37% Similarity=0.642 Sum_probs=191.1
Q ss_pred CCceEEEecceecccCCCHHHHHHHHHcCCCceeeCCccccccCCCCccccccccCCcccceeEEecCCCCCCCCCcccC
Q 011989 38 LRRVVVTGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSKVAAVVPCGISSGEFNEDSW 117 (473)
Q Consensus 38 ~~~v~ItG~g~~~p~g~~~~~~~~~l~~G~s~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~~~~ 117 (473)
|++|||||||+++|+|.+.++||++|++|++++++++. +|+...|+.... ...+..+.+.+++++ ...||..++
T Consensus 1 m~~V~ItG~g~~~p~g~~~~~~w~~L~~g~~~~~~~~~-r~~~~~~~~~~~-~~~~~~~~~~~~~~~----~~~~~~~~~ 74 (254)
T PF00109_consen 1 MRRVVITGMGCVTPGGDGLEEFWEALLSGRSGIRPIPE-RWDPSDYYDPPS-RVAGEIDDKKGGFID----DFDFDAYFF 74 (254)
T ss_dssp -S-EEEEEEEEEBTTBSSHHHHHHHHHTT---EEESCS-SSCHTTSTTSSC-SEEECBSSSEESSST----TTCGGGTST
T ss_pred CCEEEEEEEEEECcCCCCHHHHHhhhccCceeeeeecc-ccccccccccCC-cccccccccccceee----ecccccccc
Confidence 68999999999999999999999999999999999998 777655431110 001222223333333 245777666
Q ss_pred -CCchhhhccCHHHHHHHHHHHHHHHHcCCCCCCCCCCC-ceeEEEecCCCChhhHHHHHHHHHHhc--cccCCCcchhh
Q 011989 118 -LNSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKE-RTGVSIGGGIGSISDTVDAAQMICEKR--LRRLSPFFIPR 193 (473)
Q Consensus 118 -~~~~~~~~~~~~~~la~~aa~~Al~dAgl~~~~~~~~~-~~gvivg~~~g~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 193 (473)
++++..++|+++++|++.++++||+|||+.+.++. .. ++||++|++.+.. ..+..+.... .....|..++.
T Consensus 75 ~~~~~~~~~~~~~~~~~l~aa~~Al~dAg~~~~~~~-~~~r~gv~~G~~~~~~----~~~~~l~~~~~~~~~~~~~~~~~ 149 (254)
T PF00109_consen 75 GIPPREARRMDRQSRLALAAAREALEDAGLDPDDLD-GERRVGVFVGSSSGDY----EFYRALDEDGETPRDVSPWFVPN 149 (254)
T ss_dssp CHHHHHHHTS-HHHHHHHHHHHHHHHHHTSTGGGHT-GGGTEEEEEEESSSHH----HHHHHHHHHTTCGGGSHTTHHHH
T ss_pred cccchhhhhhhhhhhHHHHHhhhhcccccccccccc-cccceeeccccccccc----cccccccccccccccccccccCc
Confidence 67777889999999999999999999999776553 34 5999999998832 3334444443 45666755566
Q ss_pred hhhhHHHHHHHHhcCCCCCeeeecCCcchHHHHHHHHHHHHHcCCCCEEEEeecCCCcChHHHHHHhhhhccccccCCCC
Q 011989 194 ILINMASGHVSMKYGFQGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTP 273 (473)
Q Consensus 194 ~~~~~~a~~ia~~lgl~Gp~~~v~~acasg~~Al~~A~~~I~~G~~d~vlv~g~d~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (473)
+++|.++++|++.||++||+++++++|+|++.||..|+++|++|++|+|||+|+|...++..+..|..++.++.
T Consensus 150 ~~~~~~a~~ia~~~gl~G~~~tv~~acaSgl~Al~~A~~~I~~G~~d~~lvgg~d~~~~~~~~~~~~~~~~~s~------ 223 (254)
T PF00109_consen 150 TLPNSAAGRIAILFGLRGPSYTVSTACASGLAALEAAYRAIRSGEADVALVGGVDAPLSPFILAGFSALGALSA------ 223 (254)
T ss_dssp HSTTHHHHHHHHHHTB-SSEEEEE-GGGHHHHHHHHHHHHHHTTSSSEEEEEEEE--SSHHHHHHHHHTTBB-T------
T ss_pred ccccccccchhhhcCCCCccccccccccccccccchhccccccccccccccccccccccccccccccccccccc------
Confidence 79999999999999999999999999999999999999999999999999999998899999999999997763
Q ss_pred CCCCcCccCCCCceeeccceEEEEEccchHH
Q 011989 274 QEASRPFDCGRDGFVIGEGSGVLVLEELEHA 304 (473)
Q Consensus 274 ~~~~~pfd~~~~G~~~geGaaavvL~~~~~A 304 (473)
+..++|||.+++|+++|||+++|||+++++|
T Consensus 224 ~~~~~pf~~~~~G~v~gEGa~~~vLe~~~~A 254 (254)
T PF00109_consen 224 DGPCRPFDPFADGFVLGEGAGALVLERLEHA 254 (254)
T ss_dssp TSGGGSTBTTB-SB-BB-EEEEEEEEEHHHH
T ss_pred cccccccCCCCCCEEEECceEEEEEEEhhhC
Confidence 2689999999999999999999999998875
|
3.1.41 from EC (KAS) [] is the enzyme that catalyzes the condensation of malonyl-ACP with the growing fatty acid chain. It is found as a component of a number of enzymatic systems, including fatty acid synthetase (FAS), which catalyzes the formation of long-chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH; the multi-functional 6-methysalicylic acid synthase (MSAS) from Penicillium patulum [], which is involved in the biosynthesis of a polyketide antibiotic; polyketide antibiotic synthase enzyme systems; Emericella nidulans multifunctional protein Wa, which is involved in the biosynthesis of conidial green pigment; Rhizobium nodulation protein nodE, which probably acts as a beta-ketoacyl synthase in the synthesis of the nodulation Nod factor fatty acyl chain; and yeast mitochondrial protein CEM1. The condensation reaction is a two step process, first the acyl component of an activated acyl primer is transferred to a cysteine residue of the enzyme and is then condensed with an activated malonyl donor with the concomitant release of carbon dioxide. This entry represents the N-terminal domain of beta-ketoacyl-ACP synthases. ; PDB: 1J3N_B 3KZU_C 1W0I_A 2IX4_A 1F91_B 2BYZ_D 2AQB_C 2BZ3_C 1H4F_C 2VB9_B .... |
| >cd00327 cond_enzymes Condensing enzymes; Family of enzymes that catalyze a (decarboxylating or non-decarboxylating) Claisen-like condensation reaction | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-31 Score=250.06 Aligned_cols=247 Identities=35% Similarity=0.478 Sum_probs=214.5
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCceeEEEecCCCChhhHHHHHHHHHHhccccCCCcchhhhhhhHHHHHHHHhcC
Q 011989 129 FIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYG 208 (473)
Q Consensus 129 ~~~la~~aa~~Al~dAgl~~~~~~~~~~~gvivg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lg 208 (473)
..+|+.+|+++||+++|+++++++ +|+++++.+.. ..+..+.+++..+|
T Consensus 7 ~~~l~~~A~~~al~~ag~~~~~i~-----~li~~~~~~~~--------------------------~~~~~a~~i~~~lg 55 (254)
T cd00327 7 ASELGFEAAEQAIADAGLSKGPIV-----GVIVGTTGGSG--------------------------EFSGAAGQLAYHLG 55 (254)
T ss_pred HHHHHHHHHHHHHHHcCCCCCCce-----EEEEEECCCCc--------------------------cccHHHHHHHHHhC
Confidence 678999999999999999887776 89999865431 13566789999999
Q ss_pred C-CCCeeeecCCcchHHHHHHHHHHHHHcCCCCEEEEeecCCCcChHHHHHHhhhhccccccCCCCCCCCcCccCCCCce
Q 011989 209 F-QGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDGF 287 (473)
Q Consensus 209 l-~Gp~~~v~~acasg~~Al~~A~~~I~~G~~d~vlv~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pfd~~~~G~ 287 (473)
+ ++|++++..+|+|++.||..|+++|++|++|.+||+++|. +
T Consensus 56 ~~~~~~~~i~~~C~s~~~al~~A~~~i~~g~~~~~lv~~~e~-------------------------------------~ 98 (254)
T cd00327 56 ISGGPAYSVNQACATGLTALALAVQQVQNGKADIVLAGGSEE-------------------------------------F 98 (254)
T ss_pred CCCCCcceeccHhHHHHHHHHHHHHHHHCCCCCEEEEEecce-------------------------------------e
Confidence 9 8999999999999999999999999999999999999995 4
Q ss_pred eeccceEEEEEccchHHHhcCCeEEEEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEEEEcCCCCCC
Q 011989 288 VIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPL 367 (473)
Q Consensus 288 ~~geGaaavvL~~~~~A~~~g~~~~a~i~g~~~~~d~~~~~~~~~~~~~~~~a~~~al~~agl~~~dId~v~~hgtgt~~ 367 (473)
++|||++++||++.+.+.+++.+++++|.++....++.... +........++++++|+++|++++|||++++|.++++.
T Consensus 99 ~~gdGAaa~vL~~~~~a~~~~~~~~~~i~~~~~~~~~~~~~-~~~~~~~~~~~i~~~l~~ag~~~~did~~~~h~~~~~~ 177 (254)
T cd00327 99 VFGDGAAAAVVESEEHALRRGAHPQAEIVSTAATFDGASMV-PAVSGEGLARAARKALEGAGLTPSDIDYVEAHGTGTPI 177 (254)
T ss_pred eecceEEEEEECcHHHHHHCCCceEEEEEEEEEcCCCCCCC-CCCChHHHHHHHHHHHHHcCCCHHHCCEEEccCCcCcc
Confidence 68999999999999999999999999999998877655332 23456778899999999999999999999999999999
Q ss_pred CCHHHHHHHHHHhhcccCCCCceeeccccchhhhHHhHHHHHHHHHHHHHHhCccCCCCCCCCCCCCCCCCCCccccCCC
Q 011989 368 GDTVEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLAIHHGVAPLTLNLAKPDPIFNDNFMPLTASKD 447 (473)
Q Consensus 368 ~D~~E~~a~~~~~~~~~~~~~~~v~s~k~~~Gh~~~AsG~~~li~~~~~l~~~~ipp~~~~~~~~~~~~~~~~~~~~~~~ 447 (473)
.|..|.......+... .+++...+..+||+.+|++++.+..++++++.+.+||. .
T Consensus 178 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~G~~~~as~~~~l~~~~~~~~~~~~~~~---------------------~ 232 (254)
T cd00327 178 GDAVELALGLDPDGVR----SPAVSATLIMTGHPLGAAGLAILDELLLMLEHEFIPPT---------------------P 232 (254)
T ss_pred ccHHHHHHHHHHhCCC----CCceeccccccccchHHHHHHHHHHHHHHHhCCCcCCC---------------------C
Confidence 9999988776655432 37889999999999999999999999999999999871 1
Q ss_pred CCCcEEEEeccccccceeeEEE
Q 011989 448 MPISAALSNSFGFGGTNASLLF 469 (473)
Q Consensus 448 ~~~~~~l~~s~g~gG~~~~~vl 469 (473)
.+.+.++++++|+||+++++||
T Consensus 233 ~~~~~~l~~~~g~Gg~~~~~~l 254 (254)
T cd00327 233 REPRTVLLLGFGLGGTNAAVVL 254 (254)
T ss_pred CCcCEEEEeeEcCCCcceEEEC
Confidence 2356899999999999999986
|
Members are share strong structural similarity, and are involved in the synthesis and degradation of fatty acids, and the production of polyketides, a diverse group of natural products. |
| >PRK05656 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.7e-26 Score=232.66 Aligned_cols=272 Identities=21% Similarity=0.302 Sum_probs=202.7
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCceeEEEecCCCChhhHHHHHHHHHHhccccCCCcchhhhhhhHHHHHHHHhcC
Q 011989 129 FIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYG 208 (473)
Q Consensus 129 ~~~la~~aa~~Al~dAgl~~~~~~~~~~~gvivg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lg 208 (473)
...|+.+|+++||+|+|+++++++ .|++|+..... ... .++..++..+|
T Consensus 26 ~~~La~~A~~~AL~~agl~~~dID-----~vi~g~~~~~~-------------------------~~~-~~a~~va~~lG 74 (393)
T PRK05656 26 AVELGAAVIRRLLEQTGLDPAQVD-----EVILGQVLTAG-------------------------AGQ-NPARQAAIKAG 74 (393)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCC-----EEEEEEecCCC-------------------------CCC-cHHHHHHHHcC
Confidence 368999999999999999998887 89998753110 011 13456888999
Q ss_pred CC--CCeeeecCCcchHHHHHHHHHHHHHcCCCCEEEEeecCCCcChHH----------------HHHH------hh---
Q 011989 209 FQ--GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALS----------------MAGF------CK--- 261 (473)
Q Consensus 209 l~--Gp~~~v~~acasg~~Al~~A~~~I~~G~~d~vlv~g~d~~~~~~~----------------~~~~------~~--- 261 (473)
+. -|+++|+.+|+|++.|+..|+++|++|.+|++||+|+|.++.... +..+ ..
T Consensus 75 l~~~~p~~~V~~~Casg~~ai~~A~~~I~sG~~d~vLv~G~E~ms~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (393)
T PRK05656 75 LPHSVPAMTLNKVCGSGLKALHLAAQAIRCGDAEVIIAGGQENMSLAPYVLPGARTGLRMGHAQLVDSMITDGLWDAFND 154 (393)
T ss_pred CCCCcceEEecccchhHHHHHHHHHHHHHcCCCCEEEEEEEhhhccCccccccccccccccchhhhhhhccccccccccC
Confidence 96 389999999999999999999999999999999999997654210 0000 00
Q ss_pred --hhc----cccccCC-------------------CCCCC----CcCccC------------------------------
Q 011989 262 --SRA----LTTKYNG-------------------TPQEA----SRPFDC------------------------------ 282 (473)
Q Consensus 262 --~~~----~~~~~~~-------------------~~~~~----~~pfd~------------------------------ 282 (473)
+.. +.+.++- .+... ..|+..
T Consensus 155 ~~~a~~a~~~~~~~gitre~~d~~Av~sh~~a~~a~~~a~~~~ei~pv~~~~~~~~~~~~~~D~~~r~~~~~e~l~~l~p 234 (393)
T PRK05656 155 YHMGITAENLVEKYGISREAQDAFAAASQQKAVAAIEAGRFDDEITPILIPQRKGEPLAFATDEQPRAGTTAESLAKLKP 234 (393)
T ss_pred CCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHcCCCcceeeeEEeccCCCCceEeccCCCCCCCCCHHHHhcCCC
Confidence 000 0000000 00000 001100
Q ss_pred --CCCcee-------eccceEEEEEccchHHHhcCCeEEEEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHHcCCCCC
Q 011989 283 --GRDGFV-------IGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSH 353 (473)
Q Consensus 283 --~~~G~~-------~geGaaavvL~~~~~A~~~g~~~~a~i~g~~~~~d~~~~~~~~~~~~~~~~a~~~al~~agl~~~ 353 (473)
..+|.+ ++|||+++||++++.|++++.+++++|.|++... ..|.....+...+++++|+++|++++
T Consensus 235 ~~~~~g~lt~~~~s~~~DGAaa~vl~s~~~A~~~g~~~~a~i~g~~~~~-----~~~~~~~~~~~~a~~~al~~agl~~~ 309 (393)
T PRK05656 235 AFKKDGSVTAGNASSLNDGAAAVLLMSAAKAKALGLPVLAKIAAYANAG-----VDPAIMGIGPVSATRRCLDKAGWSLA 309 (393)
T ss_pred CcCCCCCEEccccCCCCCceEEEEEecHHHHHHCCCCeeEEEEEEEEec-----CCCcccchhHHHHHHHHHHHcCCCHH
Confidence 022445 8999999999999999999999999999998875 24555556778999999999999999
Q ss_pred CccEEEEcCCCCCCCCHHHHHHHHHHhhcccCCCCceeeccccchhhhHHhHHHHHHHHHHHHHHhCccCCCCCCCCCCC
Q 011989 354 QVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLAIHHGVAPLTLNLAKPDP 433 (473)
Q Consensus 354 dId~v~~hgtgt~~~D~~E~~a~~~~~~~~~~~~~~~v~s~k~~~Gh~~~AsG~~~li~~~~~l~~~~ipp~~~~~~~~~ 433 (473)
|||++|+|.+ +..|..++.+.|+... .++++++.|..+||+.||+|+..++.++++|+.
T Consensus 310 dId~~e~~d~-----f~~~~~~~~e~lg~~~--~~vn~~Gg~~a~GHp~gAsG~~~~~~l~~~l~~-------------- 368 (393)
T PRK05656 310 ELDLIEANEA-----FAAQSLAVGKELGWDA--AKVNVNGGAIALGHPIGASGCRVLVTLLHEMIR-------------- 368 (393)
T ss_pred HCCEEEecCc-----cHHHHHHHHHHhCCCC--ccCCcCCCHHHhCccHHHHHHHHHHHHHHHHHH--------------
Confidence 9999999943 4456666677776432 367888888899999999999999999998873
Q ss_pred CCCCCCCccccCCCCCCcEEEEeccccccceeeEEEee
Q 011989 434 IFNDNFMPLTASKDMPISAALSNSFGFGGTNASLLFTK 471 (473)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~l~~s~g~gG~~~~~vl~~ 471 (473)
.+.+++|++...-||.-.++|||+
T Consensus 369 --------------~~~~~gl~~~c~~gG~g~a~~~e~ 392 (393)
T PRK05656 369 --------------RDAKKGLATLCIGGGQGVALAIER 392 (393)
T ss_pred --------------cCCCEEEEEEcccCcceEEEEEec
Confidence 135789999999999999999986
|
|
| >PRK12578 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.4e-27 Score=235.16 Aligned_cols=285 Identities=19% Similarity=0.193 Sum_probs=198.7
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCceeEEEecCCCChhhHHHHHHHHHHhccccCCCcchhhhhhhHHHHHHHHhcC
Q 011989 129 FIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYG 208 (473)
Q Consensus 129 ~~~la~~aa~~Al~dAgl~~~~~~~~~~~gvivg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lg 208 (473)
...|+.+|+++||+|||+++++++ .|++|+..... ....++..++..+|
T Consensus 21 ~~eLa~~A~~~AL~dAgi~~~dID-----~vi~g~~~~~~--------------------------~~~~~a~~v~~~lG 69 (385)
T PRK12578 21 VQELAWESIKEALNDAGVSQTDIE-----LVVVGSTAYRG--------------------------IELYPAPIVAEYSG 69 (385)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCC-----EEEEEeccccc--------------------------ccCChHHHHHHHhC
Confidence 468999999999999999998887 88888743210 00112456888999
Q ss_pred CCC-CeeeecCCcchHHHHHHHHHHHHHcCCCCEEEEeecCCCcChHHH--------------------------HHHhh
Q 011989 209 FQG-PNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSM--------------------------AGFCK 261 (473)
Q Consensus 209 l~G-p~~~v~~acasg~~Al~~A~~~I~~G~~d~vlv~g~d~~~~~~~~--------------------------~~~~~ 261 (473)
+++ +.++|+++|+|++.||..|+++|++|++|++||+|+|.+...... ..+..
T Consensus 70 l~~~~~~~v~~~casg~~al~~A~~~I~sG~~~~vLvvg~e~~s~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~a~~a 149 (385)
T PRK12578 70 LTGKVPLRVEAMCATGLAASLTAYTAVASGLVDMAIAVGVDKMTEVDTSTSLAIGGRGGNYQWEYHFYGTTFPTYYALYA 149 (385)
T ss_pred CCCCCeeEEeccCHHHHHHHHHHHHHHHCCCCCEEEEEEEeecccCcccchhhhcccccccccccccCCCChHHHHHHHH
Confidence 976 778999999999999999999999999999999999975432100 00000
Q ss_pred hhccccccCC------------------CCCCC----------------CcCccCCCCceeeccceEEEEEccchHHHhc
Q 011989 262 SRALTTKYNG------------------TPQEA----------------SRPFDCGRDGFVIGEGSGVLVLEELEHAKKR 307 (473)
Q Consensus 262 ~~~~~~~~~~------------------~~~~~----------------~~pfd~~~~G~~~geGaaavvL~~~~~A~~~ 307 (473)
...+. +++. .|... ..|+ ...+...++||++|+||++++.|+++
T Consensus 150 ~~~m~-~~g~t~e~~a~va~~~~~~A~~np~a~~~~~i~~e~v~~s~~i~~Pl-~~~d~~~~~DGAaA~vl~s~e~A~~l 227 (385)
T PRK12578 150 TRHMA-VYGTTEEQMALVSVKAHKYGAMNPKAHFQKPVTVEEVLKSRAISWPI-KLLDSCPISDGSATAIFASEEKVKEL 227 (385)
T ss_pred HHHHH-HhCcCHHHHHHHHHHHHHHHhcCChhhcCCCCCHHHHhcCCccCCCc-cHhhcCCcCCCeEEEEEecHHHHHhc
Confidence 00000 0000 01100 0111 11233347999999999999999988
Q ss_pred CCeEEEEEEEEEEecCCCCCC-CCCCCh-HHHHHHHHHHHHHcCCCCCCccEEEEcCCCCCCCCHHHHHHHHHHhhcc--
Q 011989 308 GAKIYAEVRGYGMSGDAHHIT-QPHIDG-KGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDH-- 383 (473)
Q Consensus 308 g~~~~a~i~g~~~~~d~~~~~-~~~~~~-~~~~~a~~~al~~agl~~~dId~v~~hgtgt~~~D~~E~~a~~~~~~~~-- 383 (473)
+.++.++|.|++...+..+.. .++... .+...++++||+++|++++|||++|+|.+.+.. |..++..+--.+
T Consensus 228 ~~~~~~~I~g~g~~~~~~~~~~~~~~~~~~~~~~a~~~al~~Agi~~~DiD~~ei~d~ft~~----~l~~le~lGl~~~G 303 (385)
T PRK12578 228 KIDSPVWITGIGYANDYAYVARRGEWVGFKATQLAARQAYNMAKVTPNDIEVATVHDAFTIA----EIMGYEDLGFTEKG 303 (385)
T ss_pred CCCCCeEEEEEEEecCcccccccccccccHHHHHHHHHHHHHcCCCHHHCCEEEecCcChHH----HHHHHHHcCCCCCC
Confidence 866678999999987765543 333333 356789999999999999999999999666533 655555442111
Q ss_pred -----------cCCCCceeeccccc--hhhhHHhHHHHHHHHHHHHHHhCccCCCCCCCCCCCCCCCCCCccccCCCC-C
Q 011989 384 -----------ATSGSLAFSSTKGA--IGHLLGAAGAVEAIFAVLAIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDM-P 449 (473)
Q Consensus 384 -----------~~~~~~~v~s~k~~--~Gh~~~AsG~~~li~~~~~l~~~~ipp~~~~~~~~~~~~~~~~~~~~~~~~-~ 449 (473)
..++++|||...+. +|||.+|+|+..++++++||+... ...|.. .
T Consensus 304 ~~~~~~~~G~~~~~G~~pvN~~GG~la~GhP~gatG~~~v~e~~~qLrg~a---------------------g~~qv~~~ 362 (385)
T PRK12578 304 KGGKFIEEGQSEKGGKVGVNLFGGLKAKGHPLGATGLSMIYEITKQLRDEA---------------------GKLQQPLK 362 (385)
T ss_pred chHHHHHCCCccCCCCeeeCCCCCcccCCCCccHHHHHHHHHHHHHHhCCc---------------------ccCcCCcc
Confidence 23456799999984 599999999999999999999643 111222 2
Q ss_pred CcEEEEeccc-cccceeeEEEee
Q 011989 450 ISAALSNSFG-FGGTNASLLFTK 471 (473)
Q Consensus 450 ~~~~l~~s~g-~gG~~~~~vl~~ 471 (473)
.+.+|+++.| .|.++.++||++
T Consensus 363 ~~~~l~~~~Gg~~~~~~~~v~~~ 385 (385)
T PRK12578 363 KYIGLVHNVGGTGHFAYVMILRR 385 (385)
T ss_pred hheEEEeccCcchhhEEEEEEeC
Confidence 4688888887 555566777764
|
|
| >PRK06633 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1e-26 Score=232.57 Aligned_cols=270 Identities=20% Similarity=0.286 Sum_probs=200.3
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCceeEEEecCCCChhhHHHHHHHHHHhccccCCCcchhhhhhhHHHHHHHHhcC
Q 011989 129 FIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYG 208 (473)
Q Consensus 129 ~~~la~~aa~~Al~dAgl~~~~~~~~~~~gvivg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lg 208 (473)
...|+.+++++||+|+|+++++++ .|++|+..... . ....+..++...|
T Consensus 27 ~~~L~~~a~~~al~~agi~~~~Id-----~vv~G~~~~~~-----------------------~---g~~~~r~~~~~~G 75 (392)
T PRK06633 27 APMLAAHLIKDILQNSKIDPALVN-----EVILGQVITGG-----------------------S---GQNPARQTLIHAG 75 (392)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHcC-----EEEEEecCccc-----------------------c---ccHHHHHHHHHCC
Confidence 357889999999999999998888 89999754211 0 1123355678889
Q ss_pred CC-C-CeeeecCCcchHHHHHHHHHHHHHcCCCCEEEEeecCCCcC-hHH-H-H------H--------Hhhh-------
Q 011989 209 FQ-G-PNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSID-ALS-M-A------G--------FCKS------- 262 (473)
Q Consensus 209 l~-G-p~~~v~~acasg~~Al~~A~~~I~~G~~d~vlv~g~d~~~~-~~~-~-~------~--------~~~~------- 262 (473)
+. + |+++|+.+|+||+.|+..|+++|++|++|++||+|+|+++. +.. . . . +...
T Consensus 76 l~~~~p~~~V~~~CaSG~~Ai~~A~~~I~sG~~dvvla~G~E~ms~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (392)
T PRK06633 76 IPKEVPGYTINKVCGSGLKSVALAANSIMTGDNEIVIAGGQENMSLGMHGSYIRAGAKFGDIKMVDLMQYDGLTDVFSGV 155 (392)
T ss_pred CCCCccchhhcchhHHHHHHHHHHHHHHHcCCCCEEEEcccccCCCCCcchhcccccccCcchhhhhhcccccccccCcc
Confidence 86 3 99999999999999999999999999999999999998763 210 0 0 0 0000
Q ss_pred --hccccc----cCC----------------------C-CCCCCcCcc-----------------------C--------
Q 011989 263 --RALTTK----YNG----------------------T-PQEASRPFD-----------------------C-------- 282 (473)
Q Consensus 263 --~~~~~~----~~~----------------------~-~~~~~~pfd-----------------------~-------- 282 (473)
...+++ ++- . ......|.+ .
T Consensus 156 ~~a~~a~~~~~~~gitre~~d~~Avksh~~a~~np~A~~~~~ei~p~~v~~~~~~~~~~~d~~~rp~~~~e~l~~l~p~~ 235 (392)
T PRK06633 156 FMGITAENISKQFNISRQEQDEFALSSHKKAAKAQLAGIFKDEILPIEVTIKKTTSLFDHDETVRPDTSLEILSKLRPAF 235 (392)
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhHHcCCCcCceeeEEeccCCCceeeccCCCCCCCCCHHHHccCCCcc
Confidence 000000 000 0 000000110 0
Q ss_pred CCCc-------eeeccceEEEEEccchHHHhcCCeEEEEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCc
Q 011989 283 GRDG-------FVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQV 355 (473)
Q Consensus 283 ~~~G-------~~~geGaaavvL~~~~~A~~~g~~~~a~i~g~~~~~d~~~~~~~~~~~~~~~~a~~~al~~agl~~~dI 355 (473)
+..| ..++|||+++||++++.|++++.+++++|.|++...+ .+...+.+...+++++|+++||+|+||
T Consensus 236 ~~~g~lt~~n~s~~sDGAaalvl~see~A~~~g~~p~a~I~g~~~~~~-----~~~~~~~~~~~a~~~Al~~AGl~p~DI 310 (392)
T PRK06633 236 DKNGVVTAGNASSINDGAACLMVVSEEALKKHNLTPLARIVSYASAGV-----DPSIMGTAPVPASQKALSKAGWSVNDL 310 (392)
T ss_pred CCCCCEechhcCCccCceEEEEEecHHHHHHCCCCeeEEEEEEEEecC-----CcchhchHHHHHHHHHHHHcCCCHHHc
Confidence 0122 3389999999999999999999999999999998764 233333556889999999999999999
Q ss_pred cEEEEcCCCCCCCCHHHHHHHHHHhhcccCC---CCceeeccccchhhhHHhHHHHHHHHHHHHHHhCccCCCCCCCCCC
Q 011989 356 DYVNAHATSTPLGDTVEATAIRTVFSDHATS---GSLAFSSTKGAIGHLLGAAGAVEAIFAVLAIHHGVAPLTLNLAKPD 432 (473)
Q Consensus 356 d~v~~hgtgt~~~D~~E~~a~~~~~~~~~~~---~~~~v~s~k~~~Gh~~~AsG~~~li~~~~~l~~~~ipp~~~~~~~~ 432 (473)
|++|+| |.+++..++..+.++ .++++++.|..+|||+||+|+++++.++++|++.
T Consensus 311 D~~ei~----------dafa~~~l~~~~~l~~~~~~vN~sGg~~a~GHplgAtG~~~~~~~~~qL~~~------------ 368 (392)
T PRK06633 311 EVIEVN----------EAFAAQSIYVNREMKWDMEKVNINGGAIAIGHPIGASGGRVLITLIHGLRRA------------ 368 (392)
T ss_pred Ceeehh----------hHHHHHHHHHHhhhCCCccccCCCCchHhhCCcHHHHHHHHHHHHHHHHHhc------------
Confidence 999999 999999998764332 3566778888999999999999999999999851
Q ss_pred CCCCCCCCccccCCCCCCcEEEEeccccccceeeEEEeec
Q 011989 433 PIFNDNFMPLTASKDMPISAALSNSFGFGGTNASLLFTKC 472 (473)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~~l~~s~g~gG~~~~~vl~~~ 472 (473)
..++.++....-||.-.++|||+.
T Consensus 369 ----------------~~~~g~~~~c~~gG~g~a~~~e~~ 392 (392)
T PRK06633 369 ----------------KAKKGLVTLCIGGGMGMAMCVEAV 392 (392)
T ss_pred ----------------CCCeEEEEEecccChhheEEEEeC
Confidence 235788888889999999999863
|
|
| >cd00751 thiolase Thiolase are ubiquitous enzymes that catalyze the reversible thiolytic cleavage of 3-ketoacyl-CoA into acyl-CoA and acetyl-CoA, a 2-step reaction involving a covalent intermediate formed with a catalytic cysteine | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.3e-26 Score=233.95 Aligned_cols=269 Identities=25% Similarity=0.336 Sum_probs=196.2
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCceeEEEecCCCChhhHHHHHHHHHHhccccCCCcchhhhhhhHHHHHHHHhcC
Q 011989 129 FIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYG 208 (473)
Q Consensus 129 ~~~la~~aa~~Al~dAgl~~~~~~~~~~~gvivg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lg 208 (473)
...|+.+|+++||+|||+++++++ .|++++..+... ....+..++..+|
T Consensus 22 ~~~La~~A~~~AL~dAgl~~~dID-----~vi~~~~~~~~~--------------------------~~~~a~~v~~~lG 70 (386)
T cd00751 22 ADDLGAAVIKALLERAGLDPEEVD-----DVIMGNVLQAGE--------------------------GQNPARQAALLAG 70 (386)
T ss_pred HHHHHHHHHHHHHHhcCCCHHHCC-----EEEEEeccCCCC--------------------------CChHHHHHHHHcC
Confidence 478999999999999999988887 888886432110 1123456888999
Q ss_pred CCC--CeeeecCCcchHHHHHHHHHHHHHcCCCCEEEEeecCCCcChHHHH------HH---------hhhh--------
Q 011989 209 FQG--PNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMA------GF---------CKSR-------- 263 (473)
Q Consensus 209 l~G--p~~~v~~acasg~~Al~~A~~~I~~G~~d~vlv~g~d~~~~~~~~~------~~---------~~~~-------- 263 (473)
++. |+++|+.+|+|++.+|..|+++|++|.+|+|||+|+|.++...... .+ ...+
T Consensus 71 l~~~~~~~~v~~~c~s~~~al~~A~~~I~sG~~~~vLv~g~e~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (386)
T cd00751 71 LPESVPATTVNRVCGSGLQAVALAAQSIAAGEADVVVAGGVESMSRAPYLLPKARRGGRLGLNTLDGMLDDGLTDPFTGL 150 (386)
T ss_pred CCCCCchhhhccccHHHHHHHHHHHHHHHCCCCCeEEEeeeeccccCcccccccccccccCccccccccccccccccCCC
Confidence 974 8999999999999999999999999999999999998753211000 00 0000
Q ss_pred ---ccccc----cCC--------------------C-----------------------CCCCCc------------C-c
Q 011989 264 ---ALTTK----YNG--------------------T-----------------------PQEASR------------P-F 280 (473)
Q Consensus 264 ---~~~~~----~~~--------------------~-----------------------~~~~~~------------p-f 280 (473)
..+++ ++. . ++...+ | +
T Consensus 151 ~~a~~a~~~~~~yg~tre~la~vav~~~~~a~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~a~~r~~~t~e~v~~s~~i~ 230 (386)
T cd00751 151 SMGITAENVAEKYGISREEQDEFALRSHQRAAAAQEAGRFKDEIVPVEVPGRKGPVVVDRDEGPRPDTTLEKLAKLKPAF 230 (386)
T ss_pred CHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHcCCCcCeEEEEEeccCCCCeEeCCCCCCCCCCCHHHHhCCCCCc
Confidence 00000 000 0 000001 1 1
Q ss_pred c-----CCCCceeeccceEEEEEccchHHHhcCCeEEEEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCc
Q 011989 281 D-----CGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQV 355 (473)
Q Consensus 281 d-----~~~~G~~~geGaaavvL~~~~~A~~~g~~~~a~i~g~~~~~d~~~~~~~~~~~~~~~~a~~~al~~agl~~~dI 355 (473)
+ ...+-..++||++++||++++.|++++.+++++|.|++..++.. .....+...+++++|+++||+|+||
T Consensus 231 ~p~g~l~~~d~~~~~dGaaavvl~s~~~a~~~~~~~~~~I~g~~~~~~~~-----~~~~~~~~~a~~~a~~~Agi~~~di 305 (386)
T cd00751 231 KKDGTVTAGNASGINDGAAAVLLMSEEKAKELGLKPLARIVGYAVAGVDP-----AIMGIGPVPAIPKALKRAGLTLDDI 305 (386)
T ss_pred CCCCcEeCCcCCCCCcceEEEEEecHHHHHHCCCCeeEEEEEEEEccCCC-----cccchhHHHHHHHHHHHcCCCHHHc
Confidence 1 01222337999999999999999999999999999999887532 2234456799999999999999999
Q ss_pred cEEEEcCCCCCCCCHHHHHHHHHHhhcccCCC-Cceeecccc--chhhhHHhHHHHHHHHHHHHHHhCccCCCCCCCCCC
Q 011989 356 DYVNAHATSTPLGDTVEATAIRTVFSDHATSG-SLAFSSTKG--AIGHLLGAAGAVEAIFAVLAIHHGVAPLTLNLAKPD 432 (473)
Q Consensus 356 d~v~~hgtgt~~~D~~E~~a~~~~~~~~~~~~-~~~v~s~k~--~~Gh~~~AsG~~~li~~~~~l~~~~ipp~~~~~~~~ 432 (473)
|++|+| |.+++..++..+.++. +.|++...+ .+||+.+|+|+.+++++++||+..
T Consensus 306 d~~e~~----------d~f~~~~~~~~e~lg~~~~pvn~~GG~l~~Gh~~gasG~~~~~e~~~qL~g~------------ 363 (386)
T cd00751 306 DLIEIN----------EAFAAQALACLKELGLDPEKVNVNGGAIALGHPLGASGARIVVTLLHELKRR------------ 363 (386)
T ss_pred CEEEee----------chhHHHHHHHHHHhCCChhhcCCCcchHhhCccHHHHHHHHHHHHHHHHHhc------------
Confidence 999999 7777776665544321 134444444 789999999999999999999862
Q ss_pred CCCCCCCCccccCCCCCCcEEEEeccccccceeeEEEee
Q 011989 433 PIFNDNFMPLTASKDMPISAALSNSFGFGGTNASLLFTK 471 (473)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~~l~~s~g~gG~~~~~vl~~ 471 (473)
..+++|++..+.||..+++|||+
T Consensus 364 ----------------~~~~gl~~~~~~gg~g~~~~ie~ 386 (386)
T cd00751 364 ----------------GGRYGLATMCIGGGQGAAMVIER 386 (386)
T ss_pred ----------------CCCEEEEEEcccccceEEEEEEC
Confidence 35789999999999999999985
|
They are found in prokaryotes and eukaryotes (cytosol, microbodies and mitochondria). There are 2 functional different classes: thiolase-I (3-ketoacyl-CoA thiolase) and thiolase-II (acetoacetyl-CoA thiolase). Thiolase-I can cleave longer fatty acid molecules and plays an important role in the beta-oxidative degradation of fatty acids. Thiolase-II has a high substrate specificity. Although it can cleave acetoacyl-CoA, its main function is the synthesis of acetoacyl-CoA from two molecules of acetyl-CoA, which gives it importance in several biosynthetic pathways. |
| >PRK06064 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.2e-26 Score=230.48 Aligned_cols=290 Identities=21% Similarity=0.284 Sum_probs=202.6
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCceeEEEecCCCChhhHHHHHHHHHHhccccCCCcchhhhhhhHHHHHHHHhcC
Q 011989 129 FIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYG 208 (473)
Q Consensus 129 ~~~la~~aa~~Al~dAgl~~~~~~~~~~~gvivg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lg 208 (473)
...|+.+|+++||+|||+++++++ +|++|++.+.... . ....+..++..+|
T Consensus 22 ~~eLa~~a~~~Al~dagl~~~~Id-----~vi~g~~~~~~~~----------------------~--~~~~a~~va~~lG 72 (389)
T PRK06064 22 LRDLAVEAGLEALEDAGIDGKDID-----AMYVGNMSAGLFV----------------------S--QEHIAALIADYAG 72 (389)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCC-----EEEEEeccccccc----------------------c--cccHHHHHHHHcC
Confidence 478899999999999999988887 8888875422100 0 0124567889999
Q ss_pred CC-CCeeeecCCcchHHHHHHHHHHHHHcCCCCEEEEeecCCCcChHH--HHH---------Hh---------hhhccc-
Q 011989 209 FQ-GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALS--MAG---------FC---------KSRALT- 266 (473)
Q Consensus 209 l~-Gp~~~v~~acasg~~Al~~A~~~I~~G~~d~vlv~g~d~~~~~~~--~~~---------~~---------~~~~~~- 266 (473)
++ .|.++++++|+|++.||..|+++|++|++|++||+|.|.+..... ... +. ....+.
T Consensus 73 l~~~~~~~v~~aCasg~~ai~~A~~~I~sG~~~~vLv~G~e~~s~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~al~a~ 152 (389)
T PRK06064 73 LAPIPATRVEAACASGGAALRQAYLAVASGEADVVLAAGVEKMTDVPTPDATEAIARAGDYEWEEFFGATFPGLYALIAR 152 (389)
T ss_pred CCCCCeeEEeCCcHHHHHHHHHHHHHHHCCCCCEEEEEEEEecccCcchhhhhhhhcccccccccccCCchHHHHHHHHH
Confidence 98 599999999999999999999999999999999999986432110 000 00 000000
Q ss_pred ---cccCC------------------CCCC----------------CCcCccCCCCceeeccceEEEEEccchHHHhcCC
Q 011989 267 ---TKYNG------------------TPQE----------------ASRPFDCGRDGFVIGEGSGVLVLEELEHAKKRGA 309 (473)
Q Consensus 267 ---~~~~~------------------~~~~----------------~~~pfd~~~~G~~~geGaaavvL~~~~~A~~~g~ 309 (473)
..++. .|.. .+.|+. ..+...++|||+++||++++.|++++.
T Consensus 153 ~~~~~yG~s~e~~a~~a~~~~~~A~~np~a~~~~~~t~~~~~~s~~i~~Pl~-~~d~~~~~dGAaa~vL~s~~~A~~~~~ 231 (389)
T PRK06064 153 RYMHKYGTTEEDLALVAVKNHYNGSKNPYAQFQKEITVEQVLNSPPVADPLK-LLDCSPITDGAAAVILASEEKAKEYTD 231 (389)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHhhCcHhhhCCCCCHHHHhcCCcccCCCc-hhhcCCCCCcceEEEEecHHHHHHhcC
Confidence 00000 0000 011111 223446899999999999999999876
Q ss_pred eEEEEEEEEEEecCCCCCCC-CCC-ChHHHHHHHHHHHHHcCCCCCCccEEEEcCCCCCCCCHHHHHHHHHH-hhc----
Q 011989 310 KIYAEVRGYGMSGDAHHITQ-PHI-DGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTV-FSD---- 382 (473)
Q Consensus 310 ~~~a~i~g~~~~~d~~~~~~-~~~-~~~~~~~a~~~al~~agl~~~dId~v~~hgtgt~~~D~~E~~a~~~~-~~~---- 382 (473)
++ ++|.|++...+..+... ++. ...+...+++++|+++||+++|||++|+|++.|.. +..++..+ |..
T Consensus 232 ~~-v~I~g~g~~~~~~~~~~~~~~~~~~~~~~a~~~al~~aGi~~~did~~e~~d~ft~~----~~~~~e~lgl~~~G~~ 306 (389)
T PRK06064 232 TP-VWIKASGQASDTIALHDRKDFTTLDAAVVAAEKAYKMAGIEPKDIDVAEVHDCFTIA----EILAYEDLGFAKKGEG 306 (389)
T ss_pred CC-eEEEEEEEecCcccccccccccccHHHHHHHHHHHHHcCCCHHHCCEEEecCCCcHH----HHHHHHHcCCCCCCch
Confidence 65 59999999887665432 222 34566789999999999999999999999988864 55555444 111
Q ss_pred --------ccCCCCceeeccccc--hhhhHHhHHHHHHHHHHHHHHhCccCCCCCCCCCCCCCCCCCCccccCCCCCCcE
Q 011989 383 --------HATSGSLAFSSTKGA--IGHLLGAAGAVEAIFAVLAIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPISA 452 (473)
Q Consensus 383 --------~~~~~~~~v~s~k~~--~Gh~~~AsG~~~li~~~~~l~~~~ipp~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (473)
-..++++|+|..++. +||+.+|+|+..++++++||+++.. . .+.|-.+.+.
T Consensus 307 ~~~~~~g~~~~~g~~pvN~~GG~l~~Ghp~~a~G~~~~~e~~~qL~g~a~------------------~-g~rqv~~a~~ 367 (389)
T PRK06064 307 GKLAREGQTYIGGDIPVNPSGGLKAKGHPVGATGVSQAVEIVWQLRGEAE------------------K-GRQQVIGAGY 367 (389)
T ss_pred HHHHHCCCccCCCCeeecCCCCcccCCCCcchhHHHHHHHHHHHHhCCCC------------------C-CCccCCCccE
Confidence 011356899999995 6999999999999999999997420 0 1223345688
Q ss_pred EEEecccc-ccceeeEEEeec
Q 011989 453 ALSNSFGF-GGTNASLLFTKC 472 (473)
Q Consensus 453 ~l~~s~g~-gG~~~~~vl~~~ 472 (473)
++++++|. +..++.+||++.
T Consensus 368 ~l~~~~g~~~~~~~~~vl~~~ 388 (389)
T PRK06064 368 GLTHNVGGTGHTAVVHILSRK 388 (389)
T ss_pred EEEecCCCccceEEEEEEEec
Confidence 99988873 456677777763
|
|
| >PRK09052 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.6e-26 Score=228.54 Aligned_cols=271 Identities=23% Similarity=0.272 Sum_probs=195.9
Q ss_pred HHHHHHHHHHHHHHHc-CCCCCCCCCCCceeEEEecCCCChhhHHHHHHHHHHhccccCCCcchhhhhhhHHHHHHHHhc
Q 011989 129 FIAYALCAADEALHDA-KWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKY 207 (473)
Q Consensus 129 ~~~la~~aa~~Al~dA-gl~~~~~~~~~~~gvivg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~l 207 (473)
...|+.+|+++||+|+ |+++++++ .|++|+..... .. ....+..+...+
T Consensus 31 ~~eLa~~A~~~AL~~a~gl~~~dID-----~vi~g~~~~~~----------------------~~---~~~~ar~~~~~~ 80 (399)
T PRK09052 31 PDDLLAHVLRSAVAQVPGLDPKLIE-----DAIVGCAMPEA----------------------EQ---GLNVARIGALLA 80 (399)
T ss_pred HHHHHHHHHHHHHHhccCcCHHHCC-----EEEEEecCCCC----------------------CC---CchHHHHHHHHc
Confidence 3689999999999997 99998888 89999754210 00 111222344556
Q ss_pred CCC--CCeeeecCCcchHHHHHHHHHHHHHcCCCCEEEEeecCCCcChHHH--------HHHh---------hhhc----
Q 011989 208 GFQ--GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSM--------AGFC---------KSRA---- 264 (473)
Q Consensus 208 gl~--Gp~~~v~~acasg~~Al~~A~~~I~~G~~d~vlv~g~d~~~~~~~~--------~~~~---------~~~~---- 264 (473)
|+. -|+++|+++|+|++.|+..|+++|++|++|+|||+|+|.++..... ..+. ....
T Consensus 81 Gl~~~~p~~~V~~aCaSg~~Al~~A~~~I~sG~~d~vLv~G~E~mS~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 160 (399)
T PRK09052 81 GLPNSVGGVTVNRFCASGLQAVAMAADRIRVGEADVMIAAGVESMSMVPMMGNKPSMSPAIFARDENVGIAYGMGLTAEK 160 (399)
T ss_pred CCCCCCceeeecchhhHHHHHHHHHHHHHHCCCCCEEEEEEEeccccCcccCcccccCcchhccCCcccccchHHHHHHH
Confidence 886 3799999999999999999999999999999999999987543200 0000 0000
Q ss_pred cccccCC-----------------------------CCCCC--C------------cC-cc--C----------------
Q 011989 265 LTTKYNG-----------------------------TPQEA--S------------RP-FD--C---------------- 282 (473)
Q Consensus 265 ~~~~~~~-----------------------------~~~~~--~------------~p-fd--~---------------- 282 (473)
+..+|+- .+... . .| ++ .
T Consensus 161 ~~~~ygitre~~d~~a~~sh~~a~~n~~ag~~~~ei~~~~v~~~~~~~~~~~~~~~~~~~~~D~~~r~~~~~e~l~~l~p 240 (399)
T PRK09052 161 VAEQWKVSREDQDAFALESHQKAIAAQQAGEFKDEITPYEITERFPDLATGEVDVKTRTVDLDEGPRADTSLEGLAKLKP 240 (399)
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHHHHcCCCCceEeeEeccccccccccCcccccceEeccCCCCCCCCCHHHHhcCCC
Confidence 0000100 00000 0 00 10 0
Q ss_pred --CCCc-------eeeccceEEEEEccchHHHhcCCeEEEEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHHcCCCCC
Q 011989 283 --GRDG-------FVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSH 353 (473)
Q Consensus 283 --~~~G-------~~~geGaaavvL~~~~~A~~~g~~~~a~i~g~~~~~d~~~~~~~~~~~~~~~~a~~~al~~agl~~~ 353 (473)
..+| ..++|||+++||++++.|++++.+++++|.|++.... .|.....+...+++++|+++|++++
T Consensus 241 ~f~~~g~lt~~n~s~~~DGAaa~vl~se~~a~~~g~~~~a~i~g~~~~~~-----~~~~~~~~~~~A~~~al~~Agi~~~ 315 (399)
T PRK09052 241 VFANKGSVTAGNSSQTSDGAGAVILVSEKALKQFNLTPLARFVSFAVAGV-----PPEIMGIGPIEAIPAALKQAGLKQD 315 (399)
T ss_pred ccCCCCcEECCccCCCCCceEEEEEecHHHHHHCCCCeeEEEEEEEEecc-----CCCccchhHHHHHHHHHHHcCCCHH
Confidence 0112 3489999999999999999999999999999998763 3444445678999999999999999
Q ss_pred CccEEEEcCCCCCCCCHHHHHHHHHHhhcccCC-CCceeecccc--chhhhHHhHHHHHHHHHHHHHHhCccCCCCCCCC
Q 011989 354 QVDYVNAHATSTPLGDTVEATAIRTVFSDHATS-GSLAFSSTKG--AIGHLLGAAGAVEAIFAVLAIHHGVAPLTLNLAK 430 (473)
Q Consensus 354 dId~v~~hgtgt~~~D~~E~~a~~~~~~~~~~~-~~~~v~s~k~--~~Gh~~~AsG~~~li~~~~~l~~~~ipp~~~~~~ 430 (473)
|||++|+| |++++..+...+.++ ...|++..++ .+|||.||+|+++++.++++|+++
T Consensus 316 did~~ei~----------D~f~~~~l~~~e~lg~~~~~vN~~GG~la~GHp~gasG~~~~~~~~~~L~~~---------- 375 (399)
T PRK09052 316 DLDWIELN----------EAFAAQSLAVIRDLGLDPSKVNPLGGAIALGHPLGATGAIRTATVVHGLRRT---------- 375 (399)
T ss_pred HcCEEEeC----------cHHHHHHHHHHHHhCCCCcccCCCCchhhcCchHHHHHHHHHHHHHHHHHhc----------
Confidence 99999999 776666555443332 1357888998 789999999999999999999851
Q ss_pred CCCCCCCCCCccccCCCCCCcEEEEeccccccceeeEEEeec
Q 011989 431 PDPIFNDNFMPLTASKDMPISAALSNSFGFGGTNASLLFTKC 472 (473)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~~~~~l~~s~g~gG~~~~~vl~~~ 472 (473)
+.++.++...+-||.-.++|||+.
T Consensus 376 ------------------~~~~g~~~~c~~gg~g~a~~~e~~ 399 (399)
T PRK09052 376 ------------------NLKYGMVTMCVGTGMGAAGIFERL 399 (399)
T ss_pred ------------------CCCeEEEEEcccCCceeEEEEEeC
Confidence 245788889999999999999874
|
|
| >PRK07108 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.3e-26 Score=229.87 Aligned_cols=270 Identities=21% Similarity=0.302 Sum_probs=201.8
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCceeEEEecCCCChhhHHHHHHHHHHhccccCCCcchhhhhhhHHHHHHHHhcC
Q 011989 129 FIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYG 208 (473)
Q Consensus 129 ~~~la~~aa~~Al~dAgl~~~~~~~~~~~gvivg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lg 208 (473)
...|+.+|+++||+|+|+++++++ .|++|+..... .. ...++..++..+|
T Consensus 27 ~~dL~~~A~~~aL~~agi~~~~ID-----~vi~G~~~~~~----------------------~~---~~~~a~~i~~~lG 76 (392)
T PRK07108 27 GATLGGHVVQHAVERAKLDPAEVE-----DVIMGCANPEG----------------------AT---GANIARQIALRAG 76 (392)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCC-----cEEEEEeeccc----------------------cc---ccHHHHHHHHHcC
Confidence 478999999999999999998887 78998754221 00 1136668888889
Q ss_pred CC--CCeeeecCCcchHHHHHHHHHHHHHcCCCCEEEEeecCCCcChHH----------HHH------Hhhhhc----cc
Q 011989 209 FQ--GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALS----------MAG------FCKSRA----LT 266 (473)
Q Consensus 209 l~--Gp~~~v~~acasg~~Al~~A~~~I~~G~~d~vlv~g~d~~~~~~~----------~~~------~~~~~~----~~ 266 (473)
+. .|+++|+++|+||+.||..|+++|++|++|++||+|+|+++.... ... +..++. +.
T Consensus 77 l~~~~p~~~V~~aCaSg~~Al~~A~~~I~sG~~d~vlagGvE~ms~~p~~~~~~~~~~~~~~~~~~~~~~~m~~~ae~~a 156 (392)
T PRK07108 77 LPVTVPGMTVNRFCSSGLQTIALAAQRVIAGEGDVFVAGGVESISCVQNEMNRHMLREGWLVEHKPEIYWSMLQTAENVA 156 (392)
T ss_pred CCCCCceeeecchhhHHHHHHHHHHHHHHCCCCCEEEEEEEeccCCCCCcCCCcCccchhhhccCCccccCHHHHHHHHH
Confidence 86 699999999999999999999999999999999999998764210 000 000000 00
Q ss_pred ccc----------------------C-C----------------CCCC--------------C------------Cc-Cc
Q 011989 267 TKY----------------------N-G----------------TPQE--------------A------------SR-PF 280 (473)
Q Consensus 267 ~~~----------------------~-~----------------~~~~--------------~------------~~-pf 280 (473)
..+ + . .|.. . .+ +|
T Consensus 157 ~~~~i~r~~~d~~a~~s~~~A~~A~k~g~~~~ei~pv~~~~~~~n~~a~~~~~~~~~~~~de~~r~~~t~e~l~~l~~~~ 236 (392)
T PRK07108 157 KRYGISKERQDEYGVQSQQRAAAAQAAGRFDDEIVPITVTAGVADKATGRLFTKEVTVSADEGIRPDTTLEGVSKIRSAL 236 (392)
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHHHHcCCCcCceeeEEecccccccccCcccccceeEccCCCCCCCCCHHHHhcCCCCC
Confidence 000 0 0 0100 0 00 11
Q ss_pred c----CCCCceeeccceEEEEEccchHHHhcCCeEEEEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCcc
Q 011989 281 D----CGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVD 356 (473)
Q Consensus 281 d----~~~~G~~~geGaaavvL~~~~~A~~~g~~~~a~i~g~~~~~d~~~~~~~~~~~~~~~~a~~~al~~agl~~~dId 356 (473)
. ...+...++|||+++||++++.|++++.+++++|.|++...+ .|+....+...+++++|+++||+++|||
T Consensus 237 ~~g~lt~~n~~~~~DGAaa~vl~s~~~A~~~g~~~~~~i~g~~~~~~-----~~~~~~~~~~~a~~~al~~agl~~~Did 311 (392)
T PRK07108 237 PGGVITAGNASQFSDGASACVVMNAKVAEREGLQPLGIFRGFAVAGC-----EPDEMGIGPVFAVPKLLKQAGLKVDDID 311 (392)
T ss_pred CCCCCcCCcCCCCCCceEEEEEecHHHHHHCCCCceEEEEEEEEecc-----CCcccchhHHHHHHHHHHHcCCCHHHcC
Confidence 0 011222389999999999999999999999999999998763 3444555678999999999999999999
Q ss_pred EEEEcCCCCCCCCHHHHHHHHHHhhcccCC---CCceeeccccchhhhHHhHHHHHHHHHHHHHHhCccCCCCCCCCCCC
Q 011989 357 YVNAHATSTPLGDTVEATAIRTVFSDHATS---GSLAFSSTKGAIGHLLGAAGAVEAIFAVLAIHHGVAPLTLNLAKPDP 433 (473)
Q Consensus 357 ~v~~hgtgt~~~D~~E~~a~~~~~~~~~~~---~~~~v~s~k~~~Gh~~~AsG~~~li~~~~~l~~~~ipp~~~~~~~~~ 433 (473)
++|+| |++++..++..+.++ .++.++..+..+|||.||+|+..++.++.+|++.
T Consensus 312 ~~ei~----------eafa~~~l~~~e~lg~~~~~vN~~GG~~a~GHp~gatG~r~~~~l~~~l~~~------------- 368 (392)
T PRK07108 312 LWELN----------EAFAVQVLYCRDTLGIPMDRLNVNGGAIAVGHPYGVSGARLTGHALIEGKRR------------- 368 (392)
T ss_pred chHhh----------hHHHHHHHHHHHhcCCCccccCCCCChHHhCcchhhhHHHHHHHHHHHHHhh-------------
Confidence 99999 999999999765544 2344555555889999999999999999999741
Q ss_pred CCCCCCCccccCCCCCCcEEEEeccccccceeeEEEee
Q 011989 434 IFNDNFMPLTASKDMPISAALSNSFGFGGTNASLLFTK 471 (473)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~l~~s~g~gG~~~~~vl~~ 471 (473)
+.++.++...+-||.-.++|||+
T Consensus 369 ---------------~~~~g~~~~c~~gg~g~a~~ie~ 391 (392)
T PRK07108 369 ---------------GAKYVVVTMCIGGGQGAAGLFEV 391 (392)
T ss_pred ---------------CCCEEEEEEccccChhhEEEEEe
Confidence 24678888999999999999986
|
|
| >PRK13359 beta-ketoadipyl CoA thiolase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.3e-25 Score=225.43 Aligned_cols=269 Identities=23% Similarity=0.274 Sum_probs=200.3
Q ss_pred HHHHHHHHHHHHHH-HcCCCCCCCCCCCceeEEEecCCCChhhHHHHHHHHHHhccccCCCcchhhhhhhHHHHHHHHhc
Q 011989 129 FIAYALCAADEALH-DAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKY 207 (473)
Q Consensus 129 ~~~la~~aa~~Al~-dAgl~~~~~~~~~~~gvivg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~l 207 (473)
...|+.++++++|+ ++|+++++++ .||+|+.... +.....++..++...
T Consensus 26 ~~~L~~~a~~~al~r~a~i~~~~Id-----~vi~G~~~~~-------------------------~~~g~~~ar~~~l~~ 75 (400)
T PRK13359 26 ADDLGAVPLKALVERNPDVDWAAID-----DVIYGCANQA-------------------------GEDNRNVARMSLLLA 75 (400)
T ss_pred HHHHHHHHHHHHHHhccCCCHHHCC-----EEEEEecccc-------------------------ccccccHHHHHHHHc
Confidence 35788899999999 5799998888 8999975311 000134556778888
Q ss_pred CCCC--CeeeecCCcchHHHHHHHHHHHHHcCCCCEEEEeecCCCcChHHH-H----HHh-------h--------h---
Q 011989 208 GFQG--PNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSM-A----GFC-------K--------S--- 262 (473)
Q Consensus 208 gl~G--p~~~v~~acasg~~Al~~A~~~I~~G~~d~vlv~g~d~~~~~~~~-~----~~~-------~--------~--- 262 (473)
||.. |+++|+.+|+||+.|+.+|+++|++|++|++|++|+|+++....+ . .+. . .
T Consensus 76 Gl~~~vp~~tV~~~CaSG~~Av~~A~~~I~sG~~divlagGvEsmS~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (400)
T PRK13359 76 GLPHGVPGSTINRLCGSGMDAVGVAARAIKSGEAALMIAGGVESMSRAPFVMGKAESAFSRQAEIFDTTIGWRFVNPLMK 155 (400)
T ss_pred CCCCCCceEEEeccchhHHHHHHHHHHHHHcCCCCEEEEeeeeccCCCccccccccccccCCcccccccccccccCCccc
Confidence 9864 999999999999999999999999999999999999998753210 0 000 0 0
Q ss_pred hcc------------ccccCC-------------------CC----CC---------------------CCc--------
Q 011989 263 RAL------------TTKYNG-------------------TP----QE---------------------ASR-------- 278 (473)
Q Consensus 263 ~~~------------~~~~~~-------------------~~----~~---------------------~~~-------- 278 (473)
... .++++- .+ .. ..|
T Consensus 156 ~~~~~~~mg~~ae~~a~~~gisre~~d~~a~~Sh~~a~~a~~~g~~~~ei~pv~~~~~~~~~~~~~~De~~r~~t~e~l~ 235 (400)
T PRK13359 156 QLYGVDSMPETAENVATDYNVSRADQDAFALRSQQKAARAQADGTLAQEIVPVTIPQKKGDPLVVSRDEHPRETTLEALA 235 (400)
T ss_pred cccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhcCCCccceeeeeeccCCCCceeecCCCCCCCCCHHHHh
Confidence 000 000100 00 00 011
Q ss_pred ----CccCCCCcee-------eccceEEEEEccchHHHhcCCeEEEEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHH
Q 011989 279 ----PFDCGRDGFV-------IGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQ 347 (473)
Q Consensus 279 ----pfd~~~~G~~-------~geGaaavvL~~~~~A~~~g~~~~a~i~g~~~~~d~~~~~~~~~~~~~~~~a~~~al~~ 347 (473)
.|+. +|.+ ++|||+++||++++.|++++.+++++|.|++... ..|.....+...+++++|++
T Consensus 236 ~l~p~f~~--~g~lT~~n~~~~~DGAaa~vL~s~e~A~~~g~~~~a~I~g~~~~~-----~~p~~~~~~~~~A~~~al~~ 308 (400)
T PRK13359 236 KLKGVVRP--DGTVTAGNASGVNDGACALLLASEAAARRHGLKPRARVLGIATAG-----VEPRVMGIGPAPATQKLLAR 308 (400)
T ss_pred cCCCccCC--CCceecccccCccCceEEEEEecHHHHHHCCCCccEEEEEEEEec-----CCCCccchhHHHHHHHHHHH
Confidence 1221 2322 8999999999999999999999999999998874 23444556778999999999
Q ss_pred cCCCCCCccEEEEcCCCCCCCCHHHHHHHHHHhhcccCC---CCceeeccccc--hhhhHHhHHHHHHHHHHHHHHhCcc
Q 011989 348 SGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATS---GSLAFSSTKGA--IGHLLGAAGAVEAIFAVLAIHHGVA 422 (473)
Q Consensus 348 agl~~~dId~v~~hgtgt~~~D~~E~~a~~~~~~~~~~~---~~~~v~s~k~~--~Gh~~~AsG~~~li~~~~~l~~~~i 422 (473)
+|++++|||++|+| |++++..+...+.++ ...|+++.++. +|||.+|+|+..++.++.+|+.
T Consensus 309 AGl~~~DID~iei~----------dafa~~~l~~~e~lg~~~~~~pvN~~GG~la~GHp~gasG~~~v~e~~~qL~~--- 375 (400)
T PRK13359 309 LGMTLDQFDVIELN----------EAFASQGLAVLRELGLADDDARVNPNGGAIALGHPLGASGARLVTTALYQLER--- 375 (400)
T ss_pred hCCCHHHcCcCccC----------cHhHHHHHHHHHHcCCCCCCCCEECCCchhhcCCchhHHHHHHHHHHHHHHhh---
Confidence 99999999999999 777766655443333 35799999995 8999999999999999999974
Q ss_pred CCCCCCCCCCCCCCCCCCccccCCCCCCcEEEEeccccccceeeEEEeec
Q 011989 423 PLTLNLAKPDPIFNDNFMPLTASKDMPISAALSNSFGFGGTNASLLFTKC 472 (473)
Q Consensus 423 pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~g~gG~~~~~vl~~~ 472 (473)
...++.++...+-||.-.++|||+.
T Consensus 376 -------------------------~~~~~g~~~~c~~gG~g~a~~ie~~ 400 (400)
T PRK13359 376 -------------------------TGGRFALCTMCIGVGQGIAIAIERV 400 (400)
T ss_pred -------------------------cCCCeEEEEEcccCCceeEEEEEeC
Confidence 1246788888889999999999873
|
|
| >TIGR01930 AcCoA-C-Actrans acetyl-CoA acetyltransferases | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.3e-26 Score=227.51 Aligned_cols=268 Identities=24% Similarity=0.289 Sum_probs=194.0
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCceeEEEecCCCChhhHHHHHHHHHHhccccCCCcchhhhhhhHHHHHHHHhcC
Q 011989 129 FIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYG 208 (473)
Q Consensus 129 ~~~la~~aa~~Al~dAgl~~~~~~~~~~~gvivg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lg 208 (473)
...|+.+|+++||+|||++++|++ ++++++..... .. ...+..++..+|
T Consensus 21 ~~~La~~A~~~Al~dAgl~~~dID-----~vv~g~~~~~~---------------------~~-----~~~a~~va~~lG 69 (386)
T TIGR01930 21 AEDLGAAVIKELLERNPLDPELID-----DVIFGNVLQAG---------------------EQ-----QNIARQAALLAG 69 (386)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCC-----EEEEEeccCCC---------------------CC-----ChHHHHHHHHcC
Confidence 478999999999999999998887 88887643210 00 123446788889
Q ss_pred CC--CCeeeecCCcchHHHHHHHHHHHHHcCCCCEEEEeecCCCcChHHHH-----------HH------hhhhc-----
Q 011989 209 FQ--GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMA-----------GF------CKSRA----- 264 (473)
Q Consensus 209 l~--Gp~~~v~~acasg~~Al~~A~~~I~~G~~d~vlv~g~d~~~~~~~~~-----------~~------~~~~~----- 264 (473)
+. .|++.++++|+|++.+|..|+++|++|.+|++||+|+|.+....... .+ ...+.
T Consensus 70 l~~~~~~~~v~~~Casg~~al~~A~~~I~sG~~~~vLv~g~e~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 149 (386)
T TIGR01930 70 LPESVPAYTVNRQCASGLQAVILAAQLIRAGEADVVVAGGVESMSRVPYSLPRSRREGVDPGRFELEDQILKDGLTDPLN 149 (386)
T ss_pred CCCCceeeeecchhhHHHHHHHHHHHHHHCCCCCEEEEEEehhhccCccccccccccccccCccccchhhcCcccccccc
Confidence 86 38999999999999999999999999999999999988743311000 00 00000
Q ss_pred ------ccc----ccCCC-----------------------------CC--------------C-CCcCcc---------
Q 011989 265 ------LTT----KYNGT-----------------------------PQ--------------E-ASRPFD--------- 281 (473)
Q Consensus 265 ------~~~----~~~~~-----------------------------~~--------------~-~~~pfd--------- 281 (473)
..+ +|+.+ |. . ...|..
T Consensus 150 ~~~~a~~a~~y~~~yG~t~e~la~vav~~~~~A~~n~~~g~~~~~i~P~a~~~~~~~~~~~~da~~r~~~t~e~v~~s~~ 229 (386)
T TIGR01930 150 GLSMGLTAENLAKKYGISREEQDEYALRSHQRAAKAWEEGLFKDEIVPVSVKGRKGPVTVSTDEGIRPNTTLEKLAKLKP 229 (386)
T ss_pred CCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHcCCCCCeEEEEEeccCCCCeEeCCCCCCCCCCCHHHHhCCCC
Confidence 000 00000 10 0 000110
Q ss_pred ---C-----CCCceeeccceEEEEEccchHHHhcCCeEEEEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHHcCCCCC
Q 011989 282 ---C-----GRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSH 353 (473)
Q Consensus 282 ---~-----~~~G~~~geGaaavvL~~~~~A~~~g~~~~a~i~g~~~~~d~~~~~~~~~~~~~~~~a~~~al~~agl~~~ 353 (473)
. ..+-..++||++++||++++.|++++.+++++|.|++.... .|+....+...+++++|+++|++|+
T Consensus 230 i~~P~~~l~~~d~~~~~dGAaa~vl~s~~~A~~~~~~~~~~i~g~g~~~~-----~~~~~~~~~~~a~~~a~~~Agi~~~ 304 (386)
T TIGR01930 230 AFDPNGTVTAGNSSPLNDGAAALLLMSEERAKELGLTPLARIVSFAVAGV-----DPEIMGLGPVPAIPKALKKAGLSIS 304 (386)
T ss_pred CcCCCCeeeCCccCCCCcceeEEEEecHHHHHHCCCCccEEEEEEEEecC-----CCccccccHHHHHHHHHHHcCCCHH
Confidence 0 01222369999999999999999999999999999998753 2233334557899999999999999
Q ss_pred CccEEEEcCCCCCCCCHHHHHHHHHHhhcccCC-CCceeecccc--chhhhHHhHHHHHHHHHHHHHHhCccCCCCCCCC
Q 011989 354 QVDYVNAHATSTPLGDTVEATAIRTVFSDHATS-GSLAFSSTKG--AIGHLLGAAGAVEAIFAVLAIHHGVAPLTLNLAK 430 (473)
Q Consensus 354 dId~v~~hgtgt~~~D~~E~~a~~~~~~~~~~~-~~~~v~s~k~--~~Gh~~~AsG~~~li~~~~~l~~~~ipp~~~~~~ 430 (473)
|||++++| |++++..++..+.++ +..|++..++ .+||+.+|+|+.+++++++||+..
T Consensus 305 did~~e~~----------d~fa~~~~~~~e~lG~~~~pvn~~GG~l~~Ghp~gasG~~~~~e~~~qL~g~---------- 364 (386)
T TIGR01930 305 DIDLFEIN----------EAFAAQVLACIKELGLDLEKVNVNGGAIALGHPLGASGARIVTTLLHELKRR---------- 364 (386)
T ss_pred HCCeeehc----------chhHHHHHHHHHHhCCChhhcCCCCChHhhCCcHHHHHHHHHHHHHHHHHhc----------
Confidence 99999999 888888776655433 2345555554 889999999999999999999862
Q ss_pred CCCCCCCCCCccccCCCCCCcEEEEeccccccceeeEEEe
Q 011989 431 PDPIFNDNFMPLTASKDMPISAALSNSFGFGGTNASLLFT 470 (473)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~~~~~l~~s~g~gG~~~~~vl~ 470 (473)
+.+++|++..+.||..+++|||
T Consensus 365 ------------------~~~~gl~~~~~~gG~g~~~~~e 386 (386)
T TIGR01930 365 ------------------GGRYGLATICIGGGQGIAVILE 386 (386)
T ss_pred ------------------CCCEEEEEEeccCCceEEEEeC
Confidence 3578999989999999999886
|
This model represents a large family of enzymes which catalyze the thiolysis of a linear fatty acid CoA (or acetoacetyl-CoA) using a second CoA molecule to produce acetyl-CoA and a CoA-ester product two carbons shorter (or, alternatively, the condensation of two molecules of acetyl-CoA to produce acetoacetyl-CoA and CoA). This enzyme is also known as "thiolase", "3-ketoacyl-CoA thiolase", "beta-ketothiolase" and "Fatty oxidation complex beta subunit". When catalyzing the degradative reaction on fatty acids the corresponding EC number is 2.3.1.16. The condensation reaction corresponds to 2.3.1.9. Note that the enzymes which catalyze the condensation are generally not involved in fatty acid biosynthesis, which is carried out by a decarboxylating condensation of acetyl and malonyl esters of acyl carrier proteins. Rather, this activity may produce acetoacetyl-CoA for pathways such as IPP biosynthesis in the absence of sufficient fatt |
| >TIGR02430 pcaF beta-ketoadipyl CoA thiolase | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.9e-26 Score=227.50 Aligned_cols=270 Identities=22% Similarity=0.259 Sum_probs=196.3
Q ss_pred HHHHHHHHHHHHH-HcCCCCCCCCCCCceeEEEecCCCChhhHHHHHHHHHHhccccCCCcchhhhhhhHHHHHHHHhcC
Q 011989 130 IAYALCAADEALH-DAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYG 208 (473)
Q Consensus 130 ~~la~~aa~~Al~-dAgl~~~~~~~~~~~gvivg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lg 208 (473)
..|+.+++++||+ |+|+++++++ .|++|+.... +.....++..++..+|
T Consensus 26 ~~L~~~a~~~al~~~a~i~~~~Id-----~v~~G~~~~~-------------------------~~~~~~~ar~~~~~~G 75 (400)
T TIGR02430 26 DDLAAVPIKALLARNPQLDWAAID-----DVIYGCANQA-------------------------GEDNRNVARMAALLAG 75 (400)
T ss_pred HHHHHHHHHHHHHhccCCCHHHCC-----EEEEEecccc-------------------------ccccccHHHHHHHHcC
Confidence 6788999999999 6899988887 8999974321 0001234456888899
Q ss_pred CC--CCeeeecCCcchHHHHHHHHHHHHHcCCCCEEEEeecCCCcChHHH-H----HH-------h------h--h---h
Q 011989 209 FQ--GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSM-A----GF-------C------K--S---R 263 (473)
Q Consensus 209 l~--Gp~~~v~~acasg~~Al~~A~~~I~~G~~d~vlv~g~d~~~~~~~~-~----~~-------~------~--~---~ 263 (473)
+. -|+++|+++|+||+.|+..|+++|++|++|++||+|+|+++..... . .+ . . . .
T Consensus 76 l~~~~p~~~V~~~CaSG~~Ai~~a~~~I~sG~~d~~la~G~E~ms~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (400)
T TIGR02430 76 LPVSVPGTTVNRLCGSGLDAIGMAARAIKAGEADLLIAGGVESMSRAPFVMGKADSAFSRSAKIEDTTIGWRFINPLMKA 155 (400)
T ss_pred CCCCCceEEeechhhhHHHHHHHHHHHHHCCCCCEEEEeccccccCCcccccccccccccccccccccccccccCccccc
Confidence 96 3999999999999999999999999999999999999988653210 0 00 0 0 0 0
Q ss_pred ccc------------cccC--------------------------------------------CCCCCCCc---------
Q 011989 264 ALT------------TKYN--------------------------------------------GTPQEASR--------- 278 (473)
Q Consensus 264 ~~~------------~~~~--------------------------------------------~~~~~~~~--------- 278 (473)
... ++|+ ..++...|
T Consensus 156 ~~~~~~M~~~ae~~a~~ygisre~~d~~A~~Sh~~a~~a~~~g~~~~ei~pv~vk~~~~~~~~~n~da~~r~~~t~e~l~ 235 (400)
T TIGR02430 156 LYGVDSMPETAENVAEEFGISREDQDAFALRSQQRTAAAQASGFFAEEIVPVVIPQKKGEPTVVDQDEHPRPETTLEGLA 235 (400)
T ss_pred ccccCcHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHcCCCcceEEEEEeccCCCCceeeCCCCccCCCCCHHHHh
Confidence 000 0000 01111111
Q ss_pred ----CccC-----CCCceeeccceEEEEEccchHHHhcCCeEEEEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHHcC
Q 011989 279 ----PFDC-----GRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSG 349 (473)
Q Consensus 279 ----pfd~-----~~~G~~~geGaaavvL~~~~~A~~~g~~~~a~i~g~~~~~d~~~~~~~~~~~~~~~~a~~~al~~ag 349 (473)
.|+. ..+-..++|||+++||++++.|++++.+++++|.|++.... .|.....+...+++++|+++|
T Consensus 236 ~~~~v~~p~g~lt~~~~s~~~DGAaa~vl~s~e~A~~~g~~~~~~I~g~~~~~~-----~~~~~~~~~~~a~~~al~~Ag 310 (400)
T TIGR02430 236 KLKPVVRPDGTVTAGNASGVNDGAAALLLASEEAVQRHGLTPRARILAAATAGV-----EPRIMGIGPVPATQKLLARAG 310 (400)
T ss_pred cCCCcccCCCCEeccccCCcCCceEEEEEecHHHHHHCCCCccEEEEEEEEecC-----CCccccchHHHHHHHHHHHhC
Confidence 0111 01122289999999999999999999888999999988753 233344466889999999999
Q ss_pred CCCCCccEEEEcCCCCCCCCHHHHHHHHHHhhcccCC---CCceeecccc--chhhhHHhHHHHHHHHHHHHHHhCccCC
Q 011989 350 LQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATS---GSLAFSSTKG--AIGHLLGAAGAVEAIFAVLAIHHGVAPL 424 (473)
Q Consensus 350 l~~~dId~v~~hgtgt~~~D~~E~~a~~~~~~~~~~~---~~~~v~s~k~--~~Gh~~~AsG~~~li~~~~~l~~~~ipp 424 (473)
++++|||++|+| |++++..+...+.++ ...|+++.++ .+|||.||+|+..++++++||+..
T Consensus 311 l~~~DID~~ei~----------D~f~~~~l~~~e~lG~~~~~~pvN~~GG~la~GHp~gasG~~~~~e~~~qLr~~---- 376 (400)
T TIGR02430 311 LSIDQFDVIELN----------EAFAAQALAVLRELGLADDDARVNPNGGAIALGHPLGASGARLVLTALRQLERS---- 376 (400)
T ss_pred CCHHHCCCcccC----------cHHHHHHHHHHHHcCCCCCCCeECCCCchHhccChHHHHHHHHHHHHHHHHHhc----
Confidence 999999999999 666655544333322 2369999999 489999999999999999999851
Q ss_pred CCCCCCCCCCCCCCCCccccCCCCCCcEEEEeccccccceeeEEEeec
Q 011989 425 TLNLAKPDPIFNDNFMPLTASKDMPISAALSNSFGFGGTNASLLFTKC 472 (473)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~g~gG~~~~~vl~~~ 472 (473)
..++.++....-||.-.++||+++
T Consensus 377 ------------------------~~~~g~~~~c~~gG~g~a~~~e~~ 400 (400)
T TIGR02430 377 ------------------------GGRYALCTMCIGVGQGIALAIERV 400 (400)
T ss_pred ------------------------CCCEEEEEEccccChhhEEEEEeC
Confidence 245788888888999999999874
|
Members of this family are designated beta-ketoadipyl CoA thiolase, an enzyme that acts at the end of pathways for the degradation of protocatechuate (from benzoate and related compounds) and of phenylacetic acid. |
| >PRK09051 beta-ketothiolase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.9e-25 Score=223.23 Aligned_cols=272 Identities=26% Similarity=0.348 Sum_probs=193.1
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCceeEEEecCCCChhhHHHHHHHHHHhccccCCCcchhhhhhhHHHHHHHHhcC
Q 011989 129 FIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYG 208 (473)
Q Consensus 129 ~~~la~~aa~~Al~dAgl~~~~~~~~~~~gvivg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lg 208 (473)
...|+.+|+++||+|+|+++++++ .|++|+...... . ....+..++..+|
T Consensus 27 ~~eL~~~A~~~AL~~agi~~~dID-----~vi~g~~~~~~~----------------------~---~~~~a~~~~~~~G 76 (394)
T PRK09051 27 PTDLGATVVREALARAGVDPDQVG-----HVVFGHVIPTEP----------------------R---DMYLSRVAAINAG 76 (394)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHcC-----EEEEeeeccccC----------------------C---CccHHHHHHHHcC
Confidence 367999999999999999998887 889987542110 0 0112233556678
Q ss_pred CC--CCeeeecCCcchHHHHHHHHHHHHHcCCCCEEEEeecCCCcChHH----------------HHH----Hhh-----
Q 011989 209 FQ--GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALS----------------MAG----FCK----- 261 (473)
Q Consensus 209 l~--Gp~~~v~~acasg~~Al~~A~~~I~~G~~d~vlv~g~d~~~~~~~----------------~~~----~~~----- 261 (473)
+. -|+++|+++|+|++.|+..|+++|++|.+|++||+|+|.++.... ... +..
T Consensus 77 l~~~~p~~~V~~aCaSg~~Al~~A~~~I~sG~~d~vLvvG~E~mS~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (394)
T PRK09051 77 VPQETPAFNVNRLCGSGLQAIVSAAQAILLGDADVAIGGGAESMSRAPYLLPAARWGARMGDAKLVDMMVGALHDPFGTI 156 (394)
T ss_pred CCCCCceEEecccchHHHHHHHHHHHHHHcCCCCEEEEEeehhcccCcccccccccccccCCchhhhhhcccccccccCC
Confidence 85 499999999999999999999999999999999999998764211 000 000
Q ss_pred -hhc----cccccCC-------------------------------------------CCCCCCc------------Ccc
Q 011989 262 -SRA----LTTKYNG-------------------------------------------TPQEASR------------PFD 281 (473)
Q Consensus 262 -~~~----~~~~~~~-------------------------------------------~~~~~~~------------pfd 281 (473)
.+. +..+++- .|+...| |+.
T Consensus 157 ~~~~~a~~~~~~ygitre~~d~~avksh~~A~~a~~~g~~~~ei~p~~~~~~~~~~~~~~da~~r~~~t~e~v~~~~~v~ 236 (394)
T PRK09051 157 HMGVTAENVAAKYGISREAQDALALESHRRAAAAIAAGYFKDQIVPVEIKTRKGEVVFDTDEHVRADTTLEDLAKLKPVF 236 (394)
T ss_pred CHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHcCCCcceeeeeeecCCCCCeEECCCCCCCCCCCHHHHcCCCCcc
Confidence 000 0000000 1222211 221
Q ss_pred CCCCcee-------eccceEEEEEccchHHHhcCCeEEEEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCC
Q 011989 282 CGRDGFV-------IGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQ 354 (473)
Q Consensus 282 ~~~~G~~-------~geGaaavvL~~~~~A~~~g~~~~a~i~g~~~~~d~~~~~~~~~~~~~~~~a~~~al~~agl~~~d 354 (473)
...+|.+ ++|||+++||++++.|++++.+++++|.|++.... .|.....+...+++++|+++|++++|
T Consensus 237 ~~~~g~lt~~~~s~~~DGAaa~vl~s~~~a~~~g~~~~~~I~g~~~~~~-----~~~~~~~~~~~a~~~al~~agi~~~d 311 (394)
T PRK09051 237 KKENGTVTAGNASGINDGAAAVVLAEADAAEARGLKPLARLVGYAHAGV-----DPEYMGIGPVPATQKALERAGLTVAD 311 (394)
T ss_pred cCCCccEeCCcCCCCCCceEEEEEecHHHHHHCCCCccEEEEEEEEecc-----CCCcccccHHHHHHHHHHHcCCCHHH
Confidence 1111333 68999999999999999999999999999998763 33334456688999999999999999
Q ss_pred ccEEEEcCCCCCCCCHHHHHHHHHHhhcccCCCCceeecccc--chhhhHHhHHHHHHHHHHHHHHhCccCCCCCCCCCC
Q 011989 355 VDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKG--AIGHLLGAAGAVEAIFAVLAIHHGVAPLTLNLAKPD 432 (473)
Q Consensus 355 Id~v~~hgtgt~~~D~~E~~a~~~~~~~~~~~~~~~v~s~k~--~~Gh~~~AsG~~~li~~~~~l~~~~ipp~~~~~~~~ 432 (473)
||++|+|.. +.++..+..+.|+.. ..+|+..++ .+||+.||+|+..+++++++|+++
T Consensus 312 id~~ei~d~-----f~~~~~~~~e~lg~~----~~~vN~~GG~~a~Ghp~gAsG~~~~~~~~~~L~~~------------ 370 (394)
T PRK09051 312 LDVIEANEA-----FAAQACAVTRELGLD----PAKVNPNGSGISLGHPVGATGAIITVKALYELQRI------------ 370 (394)
T ss_pred cCEEEecCc-----cHHHHHHHHHHhCCC----ccccCCCccHHHhcchHHHHHHHHHHHHHHHHHhc------------
Confidence 999999932 223333444444432 246666666 589999999999999999999851
Q ss_pred CCCCCCCCccccCCCCCCcEEEEeccccccceeeEEEeec
Q 011989 433 PIFNDNFMPLTASKDMPISAALSNSFGFGGTNASLLFTKC 472 (473)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~~l~~s~g~gG~~~~~vl~~~ 472 (473)
+.++.++....-||.-.++|||+.
T Consensus 371 ----------------~~~~g~~~~c~~gG~g~a~~~e~~ 394 (394)
T PRK09051 371 ----------------GGRYALVTMCIGGGQGIAAIFERL 394 (394)
T ss_pred ----------------CCCEEEEEEccccChhhEEEEEeC
Confidence 246788888899999999999873
|
|
| >PRK07516 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.5e-25 Score=224.57 Aligned_cols=289 Identities=20% Similarity=0.243 Sum_probs=195.6
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCceeEEEecCCCChhhHHHHHHHHHHhccccCCCcchhhhhhhHHHHHHHHhcC
Q 011989 129 FIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYG 208 (473)
Q Consensus 129 ~~~la~~aa~~Al~dAgl~~~~~~~~~~~gvivg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lg 208 (473)
...|+.+|+++||+|||+++++++ +|++|+..+... .. . ..... .+...++
T Consensus 22 ~~eL~~eA~~~AL~dAgl~~~dId-----~vi~g~~~~~~~-----------------~~----~-~~~~~--~~~~~~g 72 (389)
T PRK07516 22 LESLIVRVAREALAHAGIAAGDVD-----GIFLGHFNAGFS-----------------PQ----D-FPASL--VLQADPA 72 (389)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCC-----EEEEEEecCCcc-----------------cc----c-cchhH--HHHHhcC
Confidence 468999999999999999988887 888887532210 00 0 00111 1223446
Q ss_pred CCC-CeeeecCCcchHHHHHHHHHHHHHcCCCCEEEEeecCCCcChHHHH--------H-----------Hh-hhhcccc
Q 011989 209 FQG-PNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMA--------G-----------FC-KSRALTT 267 (473)
Q Consensus 209 l~G-p~~~v~~acasg~~Al~~A~~~I~~G~~d~vlv~g~d~~~~~~~~~--------~-----------~~-~~~~~~~ 267 (473)
++. |.++|+++|+|++.||..|+++|++|++|++||+|+|.++...... . +. ......+
T Consensus 73 l~~~p~~~v~~~CaSg~~Al~~A~~~I~sG~~d~vLvvg~e~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~a~ 152 (389)
T PRK07516 73 LRFKPATRVENACATGSAAVYAALDAIEAGRARIVLVVGAEKMTATPTAEVGDILLGASYLKEEGDTPGGFAGVFGRIAQ 152 (389)
T ss_pred CCCCceeeeccccHHHHHHHHHHHHHHHCCCCCEEEEEEehhhccCcchhhHHHhhhccccccccccCCCcHHHHHHHHH
Confidence 654 8999999999999999999999999999999999999865321100 0 00 0000000
Q ss_pred c----cCC------------------CCCCC-CcCcc------------------CCCCceeeccceEEEEEccchHHHh
Q 011989 268 K----YNG------------------TPQEA-SRPFD------------------CGRDGFVIGEGSGVLVLEELEHAKK 306 (473)
Q Consensus 268 ~----~~~------------------~~~~~-~~pfd------------------~~~~G~~~geGaaavvL~~~~~A~~ 306 (473)
+ |+. .|... .+|++ ...+...++|||+|+||++++.|++
T Consensus 153 ~y~~~yg~~~e~~a~vav~~~~~A~~nP~A~~~~~~t~~~~~~~~~~~~~i~~pl~~~d~~~~~DGAaa~il~s~~~a~~ 232 (389)
T PRK07516 153 AYFQRYGDQSDALAMIAAKNHANGVANPYAQMRKDLGFEFCRTVSEKNPLVAGPLRRTDCSLVSDGAAALVLADAETARA 232 (389)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhhhcCChhhcCCcccHHhhhhhhhcCCcccCCCchhhcCCcCcceEEEEEecHHHHHh
Confidence 0 000 11100 01111 0123344799999999999999988
Q ss_pred cCCeEEEEEEEEEEecCCCCCCCCCC-ChHHHHHHHHHHHHHcCCCCCCccEEEEcCCCCCCCCHHHHHHHHHHhhc---
Q 011989 307 RGAKIYAEVRGYGMSGDAHHITQPHI-DGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSD--- 382 (473)
Q Consensus 307 ~g~~~~a~i~g~~~~~d~~~~~~~~~-~~~~~~~a~~~al~~agl~~~dId~v~~hgtgt~~~D~~E~~a~~~~~~~--- 382 (473)
++. .++|.|++...+..+....++ ...+...+++++|+++||+|+|||++|+|.+.+.. |...+..+--.
T Consensus 233 ~~~--~v~i~g~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~agl~~~did~~e~~d~f~~~----~~~~~e~lg~~~~G 306 (389)
T PRK07516 233 LQR--AVRFRARAHVNDFLPLSRRDPLAFEGPRRAWQRALAQAGVTLDDLSFVETHDCFTIA----ELIEYEAMGLAPPG 306 (389)
T ss_pred cCC--CEEEEEEEeccCcccccCCCccccHHHHHHHHHHHHHcCCCHHHCCEEEEecCCCHH----HHHHHHHcCCCCCC
Confidence 853 478999998877655433222 34667789999999999999999999999766655 44444333100
Q ss_pred ----------ccCCCCceeecccc--chhhhHHhHHHHHHHHHHHHHHhCccCCCCCCCCCCCCCCCCCCccccCCCCCC
Q 011989 383 ----------HATSGSLAFSSTKG--AIGHLLGAAGAVEAIFAVLAIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPI 450 (473)
Q Consensus 383 ----------~~~~~~~~v~s~k~--~~Gh~~~AsG~~~li~~~~~l~~~~ipp~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (473)
...++.+|||...+ .+|||.||+|+.+++++++||+... ...|..+.
T Consensus 307 ~~~~~~~~g~~~~~g~~pvN~sGG~la~Ghp~gasG~~~~~e~~~QL~g~a---------------------g~rQv~~a 365 (389)
T PRK07516 307 QGARAIREGWTAKDGKLPVNPSGGLKAKGHPIGATGVSMHVLAAMQLTGEA---------------------GGMQIPGA 365 (389)
T ss_pred chHHHHHCCCccCCCCeeecCCCCcccCCCCccHHHHHHHHHHHHHhcCCc---------------------cCCcCCch
Confidence 01235679988777 5699999999999999999999753 22344457
Q ss_pred cEEEEeccc-cccceeeEEEeecC
Q 011989 451 SAALSNSFG-FGGTNASLLFTKCQ 473 (473)
Q Consensus 451 ~~~l~~s~g-~gG~~~~~vl~~~~ 473 (473)
+.+++++.| .+.+++.+||++.+
T Consensus 366 ~~~l~~~~gg~~~~~~~~vl~~~~ 389 (389)
T PRK07516 366 KLAGVFNMGGAAVANYVSILERVK 389 (389)
T ss_pred heeeeeccCcccceEEEEEEEecC
Confidence 788998888 55567777778764
|
|
| >PRK05790 putative acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.2e-25 Score=225.44 Aligned_cols=270 Identities=23% Similarity=0.326 Sum_probs=192.1
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCceeEEEecCCCChhhHHHHHHHHHHhccccCCCcchhhhhhhHHHHHHHHhcC
Q 011989 129 FIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYG 208 (473)
Q Consensus 129 ~~~la~~aa~~Al~dAgl~~~~~~~~~~~gvivg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lg 208 (473)
...|+.+|+++||+|||+++++++ ++++|+..... . ....+..+...+|
T Consensus 26 ~~~La~~A~~~AL~dAgl~~~dID-----~vi~g~~~~~~-----------------------~---~~~~~~~~~~~~g 74 (393)
T PRK05790 26 AVELGAIVIKAALERAGVPPEQVD-----EVIMGQVLQAG-----------------------A---GQNPARQAALKAG 74 (393)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCC-----eEEEEEecCCC-----------------------C---CCcHHHHHHHHcC
Confidence 478999999999999999999888 88888754210 0 0111223455567
Q ss_pred CC--CCeeeecCCcchHHHHHHHHHHHHHcCCCCEEEEeecCCCcChHH---------------H-HHH------h----
Q 011989 209 FQ--GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALS---------------M-AGF------C---- 260 (473)
Q Consensus 209 l~--Gp~~~v~~acasg~~Al~~A~~~I~~G~~d~vlv~g~d~~~~~~~---------------~-~~~------~---- 260 (473)
+. -|.++++.+|+|++.||..|+++|++|++|+|||+|+|.++.... . ..+ .
T Consensus 75 l~~~~~~~~v~~~Casg~~al~~A~~~I~sG~~d~vLv~G~e~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (393)
T PRK05790 75 LPVEVPALTINKVCGSGLKAVALAAQAIRAGDADIVVAGGQESMSQAPHVLPGSRWGQKMGDVELVDTMIHDGLTDAFNG 154 (393)
T ss_pred CCCCCceeeecccchHHHHHHHHHHHHHHcCCCCEEEEEeeeccccCcccccccccccccCcchhhhhhcccccccccCC
Confidence 75 489999999999999999999999999999999999997532110 0 000 0
Q ss_pred -hhhccccc----cCC---------------------C--------C---------------CCCC------cC------
Q 011989 261 -KSRALTTK----YNG---------------------T--------P---------------QEAS------RP------ 279 (473)
Q Consensus 261 -~~~~~~~~----~~~---------------------~--------~---------------~~~~------~p------ 279 (473)
.....+++ |+. . | +... .|
T Consensus 155 ~~~a~~a~~y~~~yG~tre~la~vav~~~~~A~~~~~~g~~~~~i~P~~~~~~~~~~~~~~~d~~~~~~~~~e~l~~~~~ 234 (393)
T PRK05790 155 YHMGITAENLAEQYGITREEQDEFALASQQKAEAAIKAGRFKDEIVPVTIKQRKGDPVVVDTDEHPRPDTTAESLAKLRP 234 (393)
T ss_pred CCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHcCCCcceEeeEEecCCCCCceEecCCCCCCCCCCHHHHhCCCC
Confidence 00000000 000 0 0 0000 01
Q ss_pred -ccC-----CCCceeeccceEEEEEccchHHHhcCCeEEEEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHHcCCCCC
Q 011989 280 -FDC-----GRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSH 353 (473)
Q Consensus 280 -fd~-----~~~G~~~geGaaavvL~~~~~A~~~g~~~~a~i~g~~~~~d~~~~~~~~~~~~~~~~a~~~al~~agl~~~ 353 (473)
|+. ..+-..++|||+++||++++.|++++.+++++|.|++.... .+.....+...+++++|+++|++++
T Consensus 235 v~~~~g~lt~~d~~~~~DGAaavvl~s~e~a~~~~~~~~~~I~g~~~~~~-----~~~~~~~~~~~a~~~a~~~Agi~~~ 309 (393)
T PRK05790 235 AFDKDGTVTAGNASGINDGAAAVVVMSEAKAKELGLTPLARIVSYAVAGV-----DPAIMGIGPVPAIRKALEKAGWSLA 309 (393)
T ss_pred ccCCCCCEeCCcCCCCCCceEEEEEecHHHHHHCCCCeeEEEEEEEEccC-----CCCccchhHHHHHHHHHHHcCCCHH
Confidence 110 00233579999999999999999999999899999998753 2333334567899999999999999
Q ss_pred CccEEEEcCCCCCCCCHHHHHHHHHHhhcccCC---CCceeeccccchhhhHHhHHHHHHHHHHHHHHhCccCCCCCCCC
Q 011989 354 QVDYVNAHATSTPLGDTVEATAIRTVFSDHATS---GSLAFSSTKGAIGHLLGAAGAVEAIFAVLAIHHGVAPLTLNLAK 430 (473)
Q Consensus 354 dId~v~~hgtgt~~~D~~E~~a~~~~~~~~~~~---~~~~v~s~k~~~Gh~~~AsG~~~li~~~~~l~~~~ipp~~~~~~ 430 (473)
|||++|+| |.+++..+...+.++ .++.++..+..+||+.||+|+..++++++||+..
T Consensus 310 did~~e~~----------d~f~~~~l~~~e~lg~~~~pvN~~GG~l~~Ghp~gatG~~~~~e~~~qL~~~---------- 369 (393)
T PRK05790 310 DLDLIEIN----------EAFAAQALAVEKELGLDPEKVNVNGGAIALGHPIGASGARILVTLLHEMKRR---------- 369 (393)
T ss_pred HCCEEEeC----------cHHHHHHHHHHHHhCCChhhcCCCcchhhhCcchhhhHHHHHHHHHHHHHhc----------
Confidence 99999999 777766655444332 2344455555789999999999999999999862
Q ss_pred CCCCCCCCCCccccCCCCCCcEEEEeccccccceeeEEEeec
Q 011989 431 PDPIFNDNFMPLTASKDMPISAALSNSFGFGGTNASLLFTKC 472 (473)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~~~~~l~~s~g~gG~~~~~vl~~~ 472 (473)
+.+++|++..+-||..+++|||++
T Consensus 370 ------------------~~~~gl~~~~~~~g~g~~~~~e~~ 393 (393)
T PRK05790 370 ------------------GAKKGLATLCIGGGQGVALIVERP 393 (393)
T ss_pred ------------------CCCeEEEEEeccCCceeEEEEEcC
Confidence 247899999999999999999974
|
|
| >PRK06205 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.4e-25 Score=226.89 Aligned_cols=271 Identities=19% Similarity=0.245 Sum_probs=196.6
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCceeEEEecCCCChhhHHHHHHHHHHhccccCCCcchhhhhhhHHHHHHHHhcC
Q 011989 129 FIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYG 208 (473)
Q Consensus 129 ~~~la~~aa~~Al~dAgl~~~~~~~~~~~gvivg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lg 208 (473)
...|+.+|+++||+|+|+++++++ .|++|+..... ....++..++..+|
T Consensus 26 ~~eLa~~A~~~AL~~agl~~~dID-----~vv~g~~~~~~--------------------------~~~~~a~~va~~~G 74 (404)
T PRK06205 26 AEELAATVIRALVERTGIDPARID-----DVIFGQGYPNG--------------------------EAPAIGRVAALDAG 74 (404)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCC-----EEEEEeccCCC--------------------------CCChHHHHHHHHcC
Confidence 368999999999999999998887 89998754221 01223446788889
Q ss_pred CC-C-CeeeecCCcchHHHHHHHHHHHHHcCCCCEEEEeecCCCcChHH----------------HHH------------
Q 011989 209 FQ-G-PNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALS----------------MAG------------ 258 (473)
Q Consensus 209 l~-G-p~~~v~~acasg~~Al~~A~~~I~~G~~d~vlv~g~d~~~~~~~----------------~~~------------ 258 (473)
+. + |.++|+.+|+|++.||..|+++|++|.+|++||+|+|.++.... +..
T Consensus 75 l~~~~p~~~V~~~CaSg~~Al~~A~~~I~sG~~d~vLv~G~E~ms~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (404)
T PRK06205 75 LPVTVPGMQLDRRCGSGLQAVITAAMQVQTGAADVVIAGGAESMSNVEFYTTDMRWGVRGGGVQLHDRLARGRETAGGRR 154 (404)
T ss_pred CCCCCceeehhhhhhHHHHHHHHHHHHHHcCCCCEEEEeeehhhccCcccccccccccccCcchhhhhhccCcccccccc
Confidence 86 3 89999999999999999999999999999999999997653110 000
Q ss_pred Hh---hh----hccccccCC--------------------------------------------CCCCCCc---------
Q 011989 259 FC---KS----RALTTKYNG--------------------------------------------TPQEASR--------- 278 (473)
Q Consensus 259 ~~---~~----~~~~~~~~~--------------------------------------------~~~~~~~--------- 278 (473)
+. .+ ..+..+++- .++...|
T Consensus 155 ~~~~~~m~~~a~~~~~~~gitre~~~~~Av~sh~~A~~a~~~g~~~~ei~pv~~~~~~~~~~~~~~da~~r~~~t~e~~~ 234 (404)
T PRK06205 155 FPVPGGMIETAENLRREYGISREEQDALAVRSHQRAVAAQEAGRFDDEIVPVTVPQRKGDPTVVDRDEHPRADTTLESLA 234 (404)
T ss_pred cCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHcCCCcceeeeeEecCCCCCceEeccCCCCCCCCCHHHHh
Confidence 00 00 000000100 0111111
Q ss_pred ---C-cc--------CCCCceeeccceEEEEEccchHHHhcCCeEEEEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHH
Q 011989 279 ---P-FD--------CGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALK 346 (473)
Q Consensus 279 ---p-fd--------~~~~G~~~geGaaavvL~~~~~A~~~g~~~~a~i~g~~~~~d~~~~~~~~~~~~~~~~a~~~al~ 346 (473)
| |+ ...+-..++|||+|+||++++.|++++.+++++|.|++...+. |.....+...+++++|+
T Consensus 235 ~~~~v~~~~~p~g~lt~~~~~~~~DGAaa~vl~se~~A~~~~~~p~~~i~g~~~~~~~-----~~~~~~~~~~a~~~al~ 309 (404)
T PRK06205 235 KLRPIMGKQDPEATVTAGNASGQNDAAAACLVTTEDKAEELGLRPLARLVSWAVAGVE-----PSRMGIGPVPATEKALA 309 (404)
T ss_pred cCCCcCccCCCCCceeCcccCCCCCceeEEEEecHHHHHHCCCCceEEEEEEEEeccC-----CccccccHHHHHHHHHH
Confidence 1 10 0112223689999999999999999999999999999987642 22222356889999999
Q ss_pred HcCCCCCCccEEEEcCCCCCCCCHHHHHHHHHHhhcccCCCC----ceeecccc--chhhhHHhHHHHHHHHHHHHHHhC
Q 011989 347 QSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGS----LAFSSTKG--AIGHLLGAAGAVEAIFAVLAIHHG 420 (473)
Q Consensus 347 ~agl~~~dId~v~~hgtgt~~~D~~E~~a~~~~~~~~~~~~~----~~v~s~k~--~~Gh~~~AsG~~~li~~~~~l~~~ 420 (473)
++||+++|||++|+| |++++..+...+.++.. -+++...+ .+|||.||+|+..++++++||+..
T Consensus 310 ~Agl~~~Did~~ei~----------d~f~~~~l~~~e~lg~~~~~~~~vN~~GG~la~Ghp~gatG~~~v~e~~~qL~~~ 379 (404)
T PRK06205 310 RAGLTLDDIDLIELN----------EAFAAQVLAVLKEWGFGADDEERLNVNGSGISLGHPVGATGGRILATLLRELQRR 379 (404)
T ss_pred HcCCCHHHCCEeeec----------cHHHHHHHHHHHHhCcCcccCCCcCCCCCHHhhCCChhhhHHHHHHHHHHHHHhc
Confidence 999999999999999 88888776654433210 13544444 779999999999999999999852
Q ss_pred ccCCCCCCCCCCCCCCCCCCccccCCCCCCcEEEEeccccccceeeEEEeecC
Q 011989 421 VAPLTLNLAKPDPIFNDNFMPLTASKDMPISAALSNSFGFGGTNASLLFTKCQ 473 (473)
Q Consensus 421 ~ipp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~g~gG~~~~~vl~~~~ 473 (473)
..++.|++...-||.-.++|||+.+
T Consensus 380 ----------------------------~~~~gl~~~c~~gg~g~a~~~e~~~ 404 (404)
T PRK06205 380 ----------------------------QARYGLETMCIGGGQGLAAVFERVN 404 (404)
T ss_pred ----------------------------CCCeEEEEEeccCChhhEEEEEecC
Confidence 2468999999999999999999864
|
|
| >PRK08242 acetyl-CoA acetyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.94 E-value=2e-25 Score=223.88 Aligned_cols=271 Identities=21% Similarity=0.213 Sum_probs=196.0
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCceeEEEecCCCChhhHHHHHHHHHHhccccCCCcchhhhhhhHHHHHHHHhcC
Q 011989 129 FIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYG 208 (473)
Q Consensus 129 ~~~la~~aa~~Al~dAgl~~~~~~~~~~~gvivg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lg 208 (473)
...|+.+|+++||+++|+++++++ .|++|+...... ....++...+...|
T Consensus 28 ~~dLa~~A~~~al~~agi~p~~ID-----~vi~G~~~~~~~-------------------------~~~~~~r~a~~~~G 77 (402)
T PRK08242 28 PVRLAAGLLEALRDRNGLDTAAVD-----DVVLGCVTPVGD-------------------------QGADIARTAVLAAG 77 (402)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHcC-----EEEEEecCCCcc-------------------------ccccHHHHHHHHcC
Confidence 457889999999999999998887 889988542100 01123334556668
Q ss_pred CC--CCeeeecCCcchHHHHHHHHHHHHHcCCCCEEEEeecCCCcChHH-H----------HH----Hhhhhc----ccc
Q 011989 209 FQ--GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALS-M----------AG----FCKSRA----LTT 267 (473)
Q Consensus 209 l~--Gp~~~v~~acasg~~Al~~A~~~I~~G~~d~vlv~g~d~~~~~~~-~----------~~----~~~~~~----~~~ 267 (473)
+. -|+++|+.+|+|++.||..|+++|++|.+|++|++|+|.++.... . .. +..++. +.+
T Consensus 78 l~~~~pa~~Vn~aCaSg~~Ai~~A~~~I~sG~~d~vLv~G~E~mS~~p~~~~~~~~~~~~~~~~~~~~~~mg~~Ae~~a~ 157 (402)
T PRK08242 78 LPETVPGVQINRFCASGLEAVNLAAAKVRSGWDDLVIAGGVESMSRVPMGSDGGAWAMDPSTNFPTYFVPQGISADLIAT 157 (402)
T ss_pred CCCCCCeEEEcchhhhHHHHHHHHHHHHHcCCCCEEEEEEEEccCCCcccccCcccccCcccccccccCCHHHHHHHHHH
Confidence 73 489999999999999999999999999999999999998764221 0 00 000000 000
Q ss_pred cc------------------C-----------------------CCCCCCCc------------C-ccCCC---------
Q 011989 268 KY------------------N-----------------------GTPQEASR------------P-FDCGR--------- 284 (473)
Q Consensus 268 ~~------------------~-----------------------~~~~~~~~------------p-fd~~~--------- 284 (473)
++ . ..++...| | |+...
T Consensus 158 ~~gisRe~~d~~A~~Sh~~A~~A~~~g~f~~ei~pv~~~~~~~~~~~de~~r~~~t~e~l~~l~p~f~~~~~~~g~~~~~ 237 (402)
T PRK08242 158 KYGFSREDVDAYAVESQQRAAAAWAEGYFAKSVVPVKDQNGLTILDHDEHMRPGTTMESLAKLKPSFAMMGEMGGFDAVA 237 (402)
T ss_pred HhCCCHHHHHHHHHHHHHHHHHHHHcCCCcceeeeeecCCCCEeeCCCCCCCCCCCHHHHhCCCCCccCccccCcccccc
Confidence 00 0 01122212 1 33210
Q ss_pred -----------------CceeeccceEEEEEccchHHHhcCCeEEEEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHH
Q 011989 285 -----------------DGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQ 347 (473)
Q Consensus 285 -----------------~G~~~geGaaavvL~~~~~A~~~g~~~~a~i~g~~~~~d~~~~~~~~~~~~~~~~a~~~al~~ 347 (473)
+...++|||+|+||++++.|+++|.+++++|.|++...+. |.....+...+++++|++
T Consensus 238 ~~~~~~~~~~~~~vTagn~s~~~DGAaAlvl~s~e~A~~~g~~p~a~I~g~~~~~~~-----~~~~~~~~~~a~~~al~~ 312 (402)
T PRK08242 238 LQKYPEVERINHVHHAGNSSGIVDGAAAVLIGSEEAGKALGLKPRARIVATATIGSD-----PTIMLTGPVPATRKALAK 312 (402)
T ss_pred cccccccccccCceecCcCCCCCCceEEEEEecHHHHHHcCCCCcEEEEEEEEecCC-----chhhcccHHHHHHHHHHH
Confidence 2224899999999999999999999899999999887542 222233456899999999
Q ss_pred cCCCCCCccEEEEcCCCCCCCCHHHHHHHHHHhhcccCC---CCceeeccccchhhhHHhHHHHHHHHHHHHHHhCccCC
Q 011989 348 SGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATS---GSLAFSSTKGAIGHLLGAAGAVEAIFAVLAIHHGVAPL 424 (473)
Q Consensus 348 agl~~~dId~v~~hgtgt~~~D~~E~~a~~~~~~~~~~~---~~~~v~s~k~~~Gh~~~AsG~~~li~~~~~l~~~~ipp 424 (473)
+|++++|||++|+| |++++..+...+.++ .++.++..+..+|||.||+|+..++.++++|+++
T Consensus 313 AGl~~~DID~~ei~----------daFa~~~l~~~e~lG~~~~~vN~~GG~la~GHP~GAsG~~~~~~l~~~L~~~---- 378 (402)
T PRK08242 313 AGLTVDDIDLFELN----------EAFASVVLRFMQALDIPHDKVNVNGGAIAMGHPLGATGAMILGTVLDELERR---- 378 (402)
T ss_pred cCCCHHHCCEEEec----------chhhHHHHHHHHHhCCCCcCCCcCCCHHhcCCcHHHHHHHHHHHHHHHHHhc----
Confidence 99999999999999 888776665444332 3455566666899999999999999999999741
Q ss_pred CCCCCCCCCCCCCCCCccccCCCCCCcEEEEeccccccceeeEEEeec
Q 011989 425 TLNLAKPDPIFNDNFMPLTASKDMPISAALSNSFGFGGTNASLLFTKC 472 (473)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~g~gG~~~~~vl~~~ 472 (473)
+.++.++....-||.-.++|||+.
T Consensus 379 ------------------------~~~~g~~~~c~ggG~g~a~~~e~~ 402 (402)
T PRK08242 379 ------------------------GKRTALITLCVGGGMGIATIIERV 402 (402)
T ss_pred ------------------------CCCeEEEEEcccCCceeEEEEEeC
Confidence 246788888899999999999873
|
|
| >PRK08256 lipid-transfer protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.6e-25 Score=226.17 Aligned_cols=279 Identities=19% Similarity=0.234 Sum_probs=191.0
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCCCCCCceeEEEecCCCChhhHHHHHHHHHHhccccCCCcchhhhhhhHHHHHHHHhc
Q 011989 128 RFIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKY 207 (473)
Q Consensus 128 ~~~~la~~aa~~Al~dAgl~~~~~~~~~~~gvivg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~l 207 (473)
...+|+.+|+++||+|||+++++++ ++++|+..+... . ...+...+
T Consensus 21 ~~~~La~~A~~~Al~dAGl~~~dID-----~~~~g~~~~~~~----------------------~-------~~~~~~~l 66 (391)
T PRK08256 21 DYPDMAAEAGRAALADAGIDYDAVQ-----QAYVGYVYGDST----------------------S-------GQRALYEV 66 (391)
T ss_pred CHHHHHHHHHHHHHHHcCCChHHCC-----eeEEEEEeCCcc----------------------h-------hHHHHHHc
Confidence 4578999999999999999888876 666665332110 0 01245578
Q ss_pred CCCC-CeeeecCCcchHHHHHHHHHHHHHcCCCCEEEEeecCCCcChHH----------HHHHh----------------
Q 011989 208 GFQG-PNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALS----------MAGFC---------------- 260 (473)
Q Consensus 208 gl~G-p~~~v~~acasg~~Al~~A~~~I~~G~~d~vlv~g~d~~~~~~~----------~~~~~---------------- 260 (473)
|+++ |.++++++|+|++.||..|+++|++|++|+|||+|+|.+..... ...+.
T Consensus 67 Gl~~~~~~~v~~~caSg~~ai~~A~~~I~sG~~d~vLv~g~e~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (391)
T PRK08256 67 GMTGIPIVNVNNNCSTGSTALFLARQAVRSGAADCALALGFEQMQPGALGSVWDDRPSPLERFDKALAELQGFDPAPPAL 146 (391)
T ss_pred CCCCCCCcccccccHHHHHHHHHHHHHHHCCCCCEEEEEEEeeccccccccccccccchhhhhhhhhhhhcccccCCccH
Confidence 9988 99999999999999999999999999999999999998642110 00000
Q ss_pred -hhhcccc----ccCC------------------CCCCC-CcCcc--------------CCCCceeeccceEEEEEccch
Q 011989 261 -KSRALTT----KYNG------------------TPQEA-SRPFD--------------CGRDGFVIGEGSGVLVLEELE 302 (473)
Q Consensus 261 -~~~~~~~----~~~~------------------~~~~~-~~pfd--------------~~~~G~~~geGaaavvL~~~~ 302 (473)
......+ +++- .|... ..|.+ ...+-..++|||+|+||.+++
T Consensus 147 ~~~a~~a~~y~~~~G~t~e~~a~vav~~~~~A~~np~A~~~~~~t~e~~~~s~~i~~Pl~~~d~~~~~DGAaA~il~s~~ 226 (391)
T PRK08256 147 RMFGGAGREHMEKYGTTAETFAKIGVKARRHAANNPYAQFRDEYTLEDVLASPMIWGPLTRLQCCPPTCGAAAAIVCSEE 226 (391)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhhhcCChhhcCCCCCHHHHhcCCcccCCCcHhhcCCCCCCeEEEEEecHH
Confidence 0000000 0000 01000 00110 011222279999999999999
Q ss_pred HHHhcCCeEEEEEEEEEEecCCCCC-CC---CCC-ChHHHHHHHHHHHHHcCCCCCCccEEEEcCCCCCCCCHHHHHHHH
Q 011989 303 HAKKRGAKIYAEVRGYGMSGDAHHI-TQ---PHI-DGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIR 377 (473)
Q Consensus 303 ~A~~~g~~~~a~i~g~~~~~d~~~~-~~---~~~-~~~~~~~a~~~al~~agl~~~dId~v~~hgtgt~~~D~~E~~a~~ 377 (473)
.|++.+.+++++|.|++...+.... .. ++. .......+++++|+++|++++|||++|+| |++++.
T Consensus 227 ~a~~~~~~~~v~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~ag~~~~DiD~~ei~----------d~f~~~ 296 (391)
T PRK08256 227 FARKHGLDRAVEIVAQAMTTDTPSTFDGRSMIDLVGYDMTRAAAQQVYEQAGIGPEDIDVVELH----------DCFSAN 296 (391)
T ss_pred HHHhcCCCCCEEEEEEEEeccccccccccccccccccHHHHHHHHHHHHHcCCCHHHCCEEeec----------cCCcHH
Confidence 9998876677899998877654322 11 111 12345679999999999999999999999 665555
Q ss_pred HHhhccc-------------------CCCCceeeccccc--hhhhHHhHHHHHHHHHHHHHHhCccCCCCCCCCCCCCCC
Q 011989 378 TVFSDHA-------------------TSGSLAFSSTKGA--IGHLLGAAGAVEAIFAVLAIHHGVAPLTLNLAKPDPIFN 436 (473)
Q Consensus 378 ~~~~~~~-------------------~~~~~~v~s~k~~--~Gh~~~AsG~~~li~~~~~l~~~~ipp~~~~~~~~~~~~ 436 (473)
.+...+. .++++|||...+. +||+.+|+|+..++++++||+.+.
T Consensus 297 ~l~~le~lg~~~~Ge~~~~~~~G~~~~~G~~pvN~~GG~ls~Ghp~gasG~~~~~e~~~QL~g~a--------------- 361 (391)
T PRK08256 297 ELLTYEALGLCPEGEAEKFIDDGDNTYGGRWVVNPSGGLLSKGHPLGATGLAQCAELTWQLRGTA--------------- 361 (391)
T ss_pred HHHHHHHcCCCCCCchHHHHHCCCccCCCCeeeCCCCccccCCCCccHHHHHHHHHHHHHhcCCc---------------
Confidence 5543322 2256799999994 599999999999999999999743
Q ss_pred CCCCccccCCCCCCcEEEEeccccccceeeEEEee
Q 011989 437 DNFMPLTASKDMPISAALSNSFGFGGTNASLLFTK 471 (473)
Q Consensus 437 ~~~~~~~~~~~~~~~~~l~~s~g~gG~~~~~vl~~ 471 (473)
...|..+.+++++++.|.+.++...||++
T Consensus 362 ------g~~Qv~~~~~~l~~~~G~~~~~~~~v~~~ 390 (391)
T PRK08256 362 ------GARQVEGARLALQHNLGLGGACVVTLYQR 390 (391)
T ss_pred ------CCCcCCccceEEEeccccceeEEEEEEec
Confidence 12233456789999999665666666654
|
|
| >PRK06365 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.5e-25 Score=223.48 Aligned_cols=287 Identities=18% Similarity=0.219 Sum_probs=190.6
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCCceeEEEecCCCChhhHHHHHHHHHHhccccCCCcchhhhhhhHHHHHHHHhcCC
Q 011989 130 IAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYGF 209 (473)
Q Consensus 130 ~~la~~aa~~Al~dAgl~~~~~~~~~~~gvivg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lgl 209 (473)
..|+.+|+++||+|||+++++++ +++++..... +.+ .+.....++..+|+
T Consensus 38 ~eL~~eA~~~Al~dagl~~~dID-----~vv~~~~~~~-----------------------~~g--~~~~~~~~~~~lGl 87 (430)
T PRK06365 38 RERVKKAFDYAMNDAGLTLADID-----GSVASYFSDH-----------------------FQR--QLLAGIMVQDYLGL 87 (430)
T ss_pred HHHHHHHHHHHHHHcCCCHHHcC-----EEEEeccccc-----------------------ccc--cchhhHHHHHhcCC
Confidence 58999999999999999988887 7776642210 001 01122246788999
Q ss_pred CC-CeeeecCCcchHHHHHHHHHHHHHcCCCCEEEEeecCCCcChHHHHH--Hhh------------------hhccccc
Q 011989 210 QG-PNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAG--FCK------------------SRALTTK 268 (473)
Q Consensus 210 ~G-p~~~v~~acasg~~Al~~A~~~I~~G~~d~vlv~g~d~~~~~~~~~~--~~~------------------~~~~~~~ 268 (473)
++ |+++++.+|+|+..||..|++.|++|.+|+|||+|+|.+++...... +.. ...+.++
T Consensus 88 ~~~~~~~v~~~~aSg~~ai~~A~~~I~sG~~~~vLv~G~e~~s~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~al~a~r 167 (430)
T PRK06365 88 VPKPSKRIEGGGATGGLAFQAGYEEIASGRMDCVAVYGFETMSHVNTWKGNEFIALASDTNFDYPLGGFYTGYYAMMAVR 167 (430)
T ss_pred CCCceEEEeCCcHHHHHHHHHHHHHHHcCCCCEEEEEEeeecccccchhhhhhhcccccccccccccCccHHHHHHHHHH
Confidence 87 88999999999999999999999999999999999997654221100 000 0000000
Q ss_pred ----cCC------------------CCCC-CCcCcc--------------CCCCceeeccceEEEEEccchHHHhcCCeE
Q 011989 269 ----YNG------------------TPQE-ASRPFD--------------CGRDGFVIGEGSGVLVLEELEHAKKRGAKI 311 (473)
Q Consensus 269 ----~~~------------------~~~~-~~~pfd--------------~~~~G~~~geGaaavvL~~~~~A~~~g~~~ 311 (473)
++. .|.. ...|++ ...+-..++|||+|+||.+++.|++.+.++
T Consensus 168 y~~~yG~t~e~la~vav~~~~~A~~NP~A~~~~~~t~e~v~~s~~i~~Plt~~d~~~~sDGAaAvvl~See~A~~l~~~p 247 (430)
T PRK06365 168 HMYEFGTTVEQLAKVSVKNHGNAIHNPFAQSPMKITVEDVRKSPMVSYPLTRLDVCAMSDGAACAILASEDKAFEITDKP 247 (430)
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHhhCcHhhcCCCCCHHHHhcCCccccCcchhhcCCcCCceEEEEEecHHHHHhcCCCC
Confidence 000 0100 011111 001122278999999999999999887666
Q ss_pred EEEEEEEEEecCCCCCCC----------------------CC-CChHHHHHHHHHHHHHcCCC--CCCccEEEEcCCCCC
Q 011989 312 YAEVRGYGMSGDAHHITQ----------------------PH-IDGKGAILAMTRALKQSGLQ--SHQVDYVNAHATSTP 366 (473)
Q Consensus 312 ~a~i~g~~~~~d~~~~~~----------------------~~-~~~~~~~~a~~~al~~agl~--~~dId~v~~hgtgt~ 366 (473)
.+|.+++...++..... +. ........+++++|+++||+ ++|||++|+|
T Consensus 248 -v~i~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~AGl~~~~~DiD~~Ei~----- 321 (430)
T PRK06365 248 -VLIKAIGTGSDTLRLADRPFGEVPLLPNESPDDYKDLRYPGVHSFRAGRMAAKEAYEMAGITDPLNDLDLIELH----- 321 (430)
T ss_pred -eEEEEEEEeccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcCCCCCHHHCCEEEee-----
Confidence 46777766654432111 00 11223457999999999998 7999999999
Q ss_pred CCCHHHHHHHHHHhhcccC-------------------CCCceeeccccc--hhhhHHhHHHHHHHHHHHHHHhCccCCC
Q 011989 367 LGDTVEATAIRTVFSDHAT-------------------SGSLAFSSTKGA--IGHLLGAAGAVEAIFAVLAIHHGVAPLT 425 (473)
Q Consensus 367 ~~D~~E~~a~~~~~~~~~~-------------------~~~~~v~s~k~~--~Gh~~~AsG~~~li~~~~~l~~~~ipp~ 425 (473)
|++++..+...+.+ ++++|||...+. .||+.||+|+.+++++++||+...-+-
T Consensus 322 -----D~Fa~~~l~~lE~lGl~~~Ge~~~~~~~G~~~~~G~~piNt~GG~la~Ghp~GatG~~~~~e~~~QLrG~a~~~- 395 (430)
T PRK06365 322 -----DAYTSSEIQTYEDLGLCKYGEGGQFIESGKPELPGKLPVNPSGGLLAAGHAVGATGIMQAVFMFWQLQGRIKKH- 395 (430)
T ss_pred -----cCCcHHHHHHHHHcCCCCCCchHHHHHCCCcCCCCCccccCCCchhcCCCcccHHHHHHHHHHHHHHhcccCCC-
Confidence 66666665543332 256899999884 599999999999999999999753110
Q ss_pred CCCCCCCCCCCCCCCcccc-CCCCCCcEEEEeccc-cccceeeEEEeecC
Q 011989 426 LNLAKPDPIFNDNFMPLTA-SKDMPISAALSNSFG-FGGTNASLLFTKCQ 473 (473)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~s~g-~gG~~~~~vl~~~~ 473 (473)
.. .. .|..+.+.+++++.| .+..++++||++.+
T Consensus 396 ---------~~------~~~rQv~~a~~~l~~~~gg~~~~~~~~vl~~~~ 430 (430)
T PRK06365 396 ---------FH------DDYLQVKNAKRGLIHSHAGTGTYVTVTILEAPK 430 (430)
T ss_pred ---------CC------cccccCCCccEEEEecCCcccceEEEEEEecCC
Confidence 00 01 233456789998887 45567788888764
|
|
| >PRK07661 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.5e-25 Score=221.00 Aligned_cols=269 Identities=22% Similarity=0.292 Sum_probs=195.5
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCceeEEEecCCCChhhHHHHHHHHHHhccccCCCcchhhhhhhHHHHHHHHhcC
Q 011989 129 FIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYG 208 (473)
Q Consensus 129 ~~~la~~aa~~Al~dAgl~~~~~~~~~~~gvivg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lg 208 (473)
...|+.+|+++||+|+|+.+++++ .+++|+..... .. ...++..++..+|
T Consensus 27 ~~eLa~~A~~~AL~~ag~~~~dID-----~vi~g~~~~~~----------------------~~---g~~~a~~~~~~lG 76 (391)
T PRK07661 27 PDDLGALVVKETLKRAGNYEGPID-----DLIIGCAMPEA----------------------EQ---GLNMARNIGALAG 76 (391)
T ss_pred HHHHHHHHHHHHHHhcCCChhHCC-----EEEEEeccccc----------------------cc---cchHHHHHHHHcC
Confidence 368999999999999997767777 88888644210 00 0123446888899
Q ss_pred CC--CCeeeecCCcchHHHHHHHHHHHHHcCCCCEEEEeecCCCcChHH-----------------H---HHHhhhhccc
Q 011989 209 FQ--GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALS-----------------M---AGFCKSRALT 266 (473)
Q Consensus 209 l~--Gp~~~v~~acasg~~Al~~A~~~I~~G~~d~vlv~g~d~~~~~~~-----------------~---~~~~~~~~~~ 266 (473)
+. -|.++|+++|+||+.|+..|+++|++|++|++||+|+|.++.... . ..+.. ..+.
T Consensus 77 l~~~~p~~~V~~aCaSG~~Al~~A~~~I~sG~~d~vLv~G~E~ms~~~~~~~~~~~~~~~~~~~~~~~~~m~~~a-~~~~ 155 (391)
T PRK07661 77 LPYTVPAITINRYCSSGLQSIAYGAERIMLGHSEAVIAGGAESMSLVPMMGHVVRPNPRLVEAAPEYYMGMGHTA-EQVA 155 (391)
T ss_pred CCCCcceeehhhhhhHHHHHHHHHHHHHHcCCCCEEEEEEEeecccCCccccccCCCccccccccchhhhHHHHH-HHHH
Confidence 97 399999999999999999999999999999999999998653210 0 00000 0000
Q ss_pred cccCC------------------CCC-----C-----------------------------CCc------------C-cc
Q 011989 267 TKYNG------------------TPQ-----E-----------------------------ASR------------P-FD 281 (473)
Q Consensus 267 ~~~~~------------------~~~-----~-----------------------------~~~------------p-fd 281 (473)
++++- .+. . ..+ | |.
T Consensus 156 ~~~g~tre~~a~~av~s~~~a~~n~~ag~~~~ei~pi~~~~~~~~~~~~~~~~~~~~~~d~~~rp~~~~e~l~~l~p~f~ 235 (391)
T PRK07661 156 VKYGISREDQDAFAVRSHQRAAKALAEGKFADEIVPVDVTLRTVGENNKLQEETITFSQDEGVRADTTLEILGKLRPAFN 235 (391)
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHHHHcCCCccceeeeecccccccccCcccccceeEecCCCCCCCCCHHHHhcCCCCcC
Confidence 01100 000 0 001 1 10
Q ss_pred -----CCCCceeeccceEEEEEccchHHHhcCCeEEEEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCcc
Q 011989 282 -----CGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVD 356 (473)
Q Consensus 282 -----~~~~G~~~geGaaavvL~~~~~A~~~g~~~~a~i~g~~~~~d~~~~~~~~~~~~~~~~a~~~al~~agl~~~dId 356 (473)
...+-..++|||+++||++++.|++++.+++++|.|++...+ .|.....+...+++++|+++||+++|||
T Consensus 236 ~~g~lt~~~~~~~~DGAaavvl~s~~~A~~~g~~~~~~i~g~~~~~~-----~~~~~~~~~~~a~~~al~~agl~~~did 310 (391)
T PRK07661 236 VKGSVTAGNSSQMSDGAAAVLLMDREKAESDGLKPLAKFRSFAVAGV-----PPEVMGIGPIAAIPKALKLAGLELSDIG 310 (391)
T ss_pred CCCCEeccccCCCCCceEEEEEecHHHHHHCCCCceEEEEEEEEecC-----CCcccchHHHHHHHHHHHHcCCCHHHCC
Confidence 011222389999999999999999999999999999998864 3333445678999999999999999999
Q ss_pred EEEEcCCCCCCCCHHHHHHHHHHhhcccCC---CCceeeccccchhhhHHhHHHHHHHHHHHHHHhCccCCCCCCCCCCC
Q 011989 357 YVNAHATSTPLGDTVEATAIRTVFSDHATS---GSLAFSSTKGAIGHLLGAAGAVEAIFAVLAIHHGVAPLTLNLAKPDP 433 (473)
Q Consensus 357 ~v~~hgtgt~~~D~~E~~a~~~~~~~~~~~---~~~~v~s~k~~~Gh~~~AsG~~~li~~~~~l~~~~ipp~~~~~~~~~ 433 (473)
++|+| |++++..+...+.++ .++.++..+..+|||.||+|+..+++++++|+++
T Consensus 311 ~~ei~----------d~f~~~~l~~~e~lg~~~~~vN~~GG~~a~Ghp~gasG~~~~~el~~qL~~~------------- 367 (391)
T PRK07661 311 LFELN----------EAFASQSIQVIRELGLDEEKVNVNGGAIALGHPLGCTGAKLTLSLIHEMKRR------------- 367 (391)
T ss_pred EEEeC----------CHHHHHHHHHHHHcCCCCCCCCCCCChHHhCCcHHHHHHHHHHHHHHHHHhc-------------
Confidence 99999 777777776544333 2344555555789999999999999999999841
Q ss_pred CCCCCCCccccCCCCCCcEEEEeccccccceeeEEEee
Q 011989 434 IFNDNFMPLTASKDMPISAALSNSFGFGGTNASLLFTK 471 (473)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~l~~s~g~gG~~~~~vl~~ 471 (473)
+.++.+....+-||.-.++||++
T Consensus 368 ---------------~~~~g~~~~c~~gg~g~a~~~e~ 390 (391)
T PRK07661 368 ---------------NEQFGIVTMCIGGGMGAAGVFEL 390 (391)
T ss_pred ---------------CCCeEEEEEccccChhhEEEEEe
Confidence 24578888889999999999986
|
|
| >PRK09050 beta-ketoadipyl CoA thiolase; Validated | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.9e-25 Score=220.59 Aligned_cols=271 Identities=23% Similarity=0.276 Sum_probs=199.1
Q ss_pred HHHHHHHHHHHHHH-HcCCCCCCCCCCCceeEEEecCCCChhhHHHHHHHHHHhccccCCCcchhhhhhhHHHHHHHHhc
Q 011989 129 FIAYALCAADEALH-DAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKY 207 (473)
Q Consensus 129 ~~~la~~aa~~Al~-dAgl~~~~~~~~~~~gvivg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~l 207 (473)
...|+.++++++|+ |+|+++++++ .|++|+.... +.....++..++...
T Consensus 26 ~~~L~~~a~~~al~~~agi~~~~Id-----~v~~G~~~~~-------------------------~~~~~~~ar~~~~~~ 75 (401)
T PRK09050 26 ADDLGAVPLKALMARNPGVDWEAVD-----DVIYGCANQA-------------------------GEDNRNVARMSALLA 75 (401)
T ss_pred HHHHHHHHHHHHHHhccCCCHHHCC-----EEEEEecccc-------------------------ccccchHHHHHHHHc
Confidence 36788999999999 6899988887 8999974321 000123445688889
Q ss_pred CCC--CCeeeecCCcchHHHHHHHHHHHHHcCCCCEEEEeecCCCcChHHH-----HHH-------hh--------h---
Q 011989 208 GFQ--GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSM-----AGF-------CK--------S--- 262 (473)
Q Consensus 208 gl~--Gp~~~v~~acasg~~Al~~A~~~I~~G~~d~vlv~g~d~~~~~~~~-----~~~-------~~--------~--- 262 (473)
|+. -|+++|+.+|+||+.|+..|+++|++|++|++||+|+|+++..... ..+ .. .
T Consensus 76 Gl~~~vP~~tV~~aCaSG~~Ai~~A~~~I~sG~~dvvlagGvEsmS~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (401)
T PRK09050 76 GLPVSVPGTTINRLCGSGMDAVGTAARAIKAGEAELMIAGGVESMSRAPFVMGKADSAFSRQAEIFDTTIGWRFVNPLMK 155 (401)
T ss_pred CCCCCCceEEEecccccHHHHHHHHHHHHHCCCCCEEEEecccccccCcccccchhhhcccCcccccccccccccCCccc
Confidence 994 3999999999999999999999999999999999999988653210 000 00 0
Q ss_pred hccc------------ccc-----------------------CC---------------------CCCCCCc--------
Q 011989 263 RALT------------TKY-----------------------NG---------------------TPQEASR-------- 278 (473)
Q Consensus 263 ~~~~------------~~~-----------------------~~---------------------~~~~~~~-------- 278 (473)
.... +++ +. .++...|
T Consensus 156 ~~~~~~~Mg~~ae~~a~~~gisre~~D~~A~~S~k~a~~A~~ng~~~~ei~p~~~~~~~~~~~~~~~da~~r~~~t~e~l 235 (401)
T PRK09050 156 AQYGVDSMPETAENVAEDYNISRADQDAFALRSQQRAAAAQAAGFLAEEIVPVTIPQKKGDPVVVDRDEHPRPETTLEAL 235 (401)
T ss_pred cccccccHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHcCCCcceeeeeeeccCCCCceeeCCCCCCCCCCCHHHH
Confidence 0000 011 00 0111111
Q ss_pred ----C-ccC-----CCCceeeccceEEEEEccchHHHhcCCeEEEEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHHc
Q 011989 279 ----P-FDC-----GRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQS 348 (473)
Q Consensus 279 ----p-fd~-----~~~G~~~geGaaavvL~~~~~A~~~g~~~~a~i~g~~~~~d~~~~~~~~~~~~~~~~a~~~al~~a 348 (473)
| |+. ..+...++|||+++||++++.|++++.+++++|.|++..... |.....+...+++++|+++
T Consensus 236 ~~l~~~~~~~g~lt~~n~s~~~DGAaa~vl~s~~~A~~lg~~p~a~I~g~~~~~~~-----~~~~~~~~~~a~~~al~~A 310 (401)
T PRK09050 236 AKLKPVFRPDGTVTAGNASGVNDGAAALLLASEAAAKKHGLTPRARILGMATAGVE-----PRIMGIGPAPATRKLLARL 310 (401)
T ss_pred hcCCCcccCCCEEeCCCcCCCcCceEEEEEecHHHHHHCCCCccEEEEEEEEeccC-----CccccchHHHHHHHHHHHc
Confidence 1 211 011222899999999999999999998899999999887532 2223345678999999999
Q ss_pred CCCCCCccEEEEcCCCCCCCCHHHHHHHHHHhhcccCC---CCceeeccccc--hhhhHHhHHHHHHHHHHHHHHhCccC
Q 011989 349 GLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATS---GSLAFSSTKGA--IGHLLGAAGAVEAIFAVLAIHHGVAP 423 (473)
Q Consensus 349 gl~~~dId~v~~hgtgt~~~D~~E~~a~~~~~~~~~~~---~~~~v~s~k~~--~Gh~~~AsG~~~li~~~~~l~~~~ip 423 (473)
||+++|||++|+| |++++..+...+.++ ...|++..++. +||+.||+|+..++++++||+.+
T Consensus 311 gl~~~DId~~ei~----------D~f~~~~l~~~e~lg~~~~~~pvN~~GG~la~Ghp~gasG~~~~~e~~~qLr~~--- 377 (401)
T PRK09050 311 GLTIDQFDVIELN----------EAFAAQGLAVLRQLGLADDDARVNPNGGAIALGHPLGMSGARLVLTALHQLERT--- 377 (401)
T ss_pred CCCHHHCCccccC----------cHhHHHHHHHHHHcCCCCCCCCEeCCCchHhcCCchhHHHHHHHHHHHHHHHhc---
Confidence 9999999999999 777776665444333 24799999995 89999999999999999999851
Q ss_pred CCCCCCCCCCCCCCCCCccccCCCCCCcEEEEeccccccceeeEEEeec
Q 011989 424 LTLNLAKPDPIFNDNFMPLTASKDMPISAALSNSFGFGGTNASLLFTKC 472 (473)
Q Consensus 424 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~g~gG~~~~~vl~~~ 472 (473)
..++.++....-||.-.++|++++
T Consensus 378 -------------------------~~~~g~~~~c~~gG~g~a~~~e~~ 401 (401)
T PRK09050 378 -------------------------GGRYALCTMCIGVGQGIALAIERV 401 (401)
T ss_pred -------------------------CCCeEEEEEcccccceeEEEEEeC
Confidence 246788888899999999999874
|
|
| >PLN02287 3-ketoacyl-CoA thiolase | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.3e-24 Score=220.98 Aligned_cols=273 Identities=18% Similarity=0.248 Sum_probs=196.3
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCceeEEEecCCCChhhHHHHHHHHHHhccccCCCcchhhhhhhHHHHHHHHhcC
Q 011989 129 FIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYG 208 (473)
Q Consensus 129 ~~~la~~aa~~Al~dAgl~~~~~~~~~~~gvivg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lg 208 (473)
...|+.+|+++||+|+|+++++++ .|++|+...... .....+..++..+|
T Consensus 71 ~~eLa~eA~~~AL~dAgl~~~dID-----~vv~G~~~~~~~-------------------------~~~~~~r~~a~~~G 120 (452)
T PLN02287 71 PDDLLAPVLKAVVEKTGLNPSEVG-----DIVVGTVLAPGS-------------------------QRANECRMAAFYAG 120 (452)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCC-----EEEEEeecCccc-------------------------ccchHHHHHHHHCC
Confidence 478999999999999999998888 888887532110 00112234667779
Q ss_pred CCC--CeeeecCCcchHHHHHHHHHHHHHcCCCCEEEEeecCCCcChHHHHH------H---h-------hhhc----cc
Q 011989 209 FQG--PNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAG------F---C-------KSRA----LT 266 (473)
Q Consensus 209 l~G--p~~~v~~acasg~~Al~~A~~~I~~G~~d~vlv~g~d~~~~~~~~~~------~---~-------~~~~----~~ 266 (473)
+.. |.++|+.+|+|++.|+..|+++|++|.+|++||+|+|.++....... + . .++. +.
T Consensus 121 l~~~~pa~~V~~~CaSG~~Ai~~Aa~~I~sG~~dvvLv~GvE~mS~~p~~~~~~~~~~~~~~~~~~~~~~~~g~~a~~y~ 200 (452)
T PLN02287 121 FPETVPVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGVESMTTNPMAWEGGVNPRVESFSQAQDCLLPMGITSENVA 200 (452)
T ss_pred CCCCcceEEEeccCchHHHHHHHHHHHHHcCCCCeEEEEeEEecCCCchhhccccCchhhccccccccCcCHHHHHHHHH
Confidence 864 88999999999999999999999999999999999998754220000 0 0 0000 00
Q ss_pred cccCC------------------CCC-----CCCc-----------------CccCC-----------------------
Q 011989 267 TKYNG------------------TPQ-----EASR-----------------PFDCG----------------------- 283 (473)
Q Consensus 267 ~~~~~------------------~~~-----~~~~-----------------pfd~~----------------------- 283 (473)
.+|+. .+. .... .++.+
T Consensus 201 ~~yGitrE~la~vAvksh~nAa~np~ag~f~~ei~pv~~~~~~~~~~~~~~~~~~~De~~r~~~~~e~l~~l~~v~~~~g 280 (452)
T PLN02287 201 ERFGVTREEQDQAAVESHRKAAAATASGKFKDEIVPVHTKIVDPKTGEEKPIVISVDDGIRPNTTLADLAKLKPVFKKNG 280 (452)
T ss_pred HHhCCCHHHHHHHHHHHHHHHHhhhhcCCcccceeeeeccccccccCCccceeecccCCCCCCCCHHHHhcCCCccCCCC
Confidence 00100 000 0000 11100
Q ss_pred ----CCceeeccceEEEEEccchHHHhcCCeEEEEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEEE
Q 011989 284 ----RDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYVN 359 (473)
Q Consensus 284 ----~~G~~~geGaaavvL~~~~~A~~~g~~~~a~i~g~~~~~d~~~~~~~~~~~~~~~~a~~~al~~agl~~~dId~v~ 359 (473)
.+-..++|||+++||++++.|++++.+|++++.+++... ..|.....+...+++++|+++||+++|||++|
T Consensus 281 ~lt~~~~s~~sDGAaalvl~see~A~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~A~~~al~~Agl~~~DID~~E 355 (452)
T PLN02287 281 TTTAGNSSQVSDGAGAVLLMKRSVAMQKGLPILGVFRSFAAVG-----VDPAVMGIGPAVAIPAAVKAAGLELDDIDLFE 355 (452)
T ss_pred CEeccccCCcCCceEEEEEeeHHHHHHCCCCeEEEEEEEeecc-----CCCccchHHHHHHHHHHHHHcCCCHHHCCEEE
Confidence 122338999999999999999999989999999987543 13444455678999999999999999999999
Q ss_pred EcCCCCCCCCHHHHHHHHHHhhcccCC---CCceeeccccchhhhHHhHHHHHHHHHHHHHHhCccCCCCCCCCCCCCCC
Q 011989 360 AHATSTPLGDTVEATAIRTVFSDHATS---GSLAFSSTKGAIGHLLGAAGAVEAIFAVLAIHHGVAPLTLNLAKPDPIFN 436 (473)
Q Consensus 360 ~hgtgt~~~D~~E~~a~~~~~~~~~~~---~~~~v~s~k~~~Gh~~~AsG~~~li~~~~~l~~~~ipp~~~~~~~~~~~~ 436 (473)
+| |++++..++..+.++ .++.++..+..+|||+||+|+..++.++++|++.-
T Consensus 356 i~----------daFa~~~l~~~e~lG~~~~pvN~sGG~la~GHp~gAsG~~~v~~l~~qL~~~~--------------- 410 (452)
T PLN02287 356 IN----------EAFASQFVYCCKKLGLDPEKVNVNGGAIALGHPLGATGARCVATLLHEMKRRG--------------- 410 (452)
T ss_pred ec----------chHHHHHHHHHHHcCCCccccCCCCcHHhccCcHHHHHHHHHHHHHHHHHhcC---------------
Confidence 99 999999998765543 23444444447899999999999999999997510
Q ss_pred CCCCccccCCCCCCcEEEEeccccccceeeEEEeec
Q 011989 437 DNFMPLTASKDMPISAALSNSFGFGGTNASLLFTKC 472 (473)
Q Consensus 437 ~~~~~~~~~~~~~~~~~l~~s~g~gG~~~~~vl~~~ 472 (473)
..-++++.....-||.-.++|||+.
T Consensus 411 -----------~~~~~gl~~~c~ggG~g~a~~ie~~ 435 (452)
T PLN02287 411 -----------KDCRFGVVSMCIGTGMGAAAVFERG 435 (452)
T ss_pred -----------CCCCeeEEEEccccCceeEEEEEec
Confidence 1126788888899999999999975
|
|
| >PRK08131 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.6e-25 Score=221.23 Aligned_cols=270 Identities=21% Similarity=0.271 Sum_probs=197.2
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCCceeEEEecCCCChhhHHHHHHHHHHhccccCCCcchhhhhhhHHHHHHHHhcCC
Q 011989 130 IAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYGF 209 (473)
Q Consensus 130 ~~la~~aa~~Al~dAgl~~~~~~~~~~~gvivg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lgl 209 (473)
..|+.+++++||+|+|+++.+++ .+++|+...... . ...++..++...|+
T Consensus 27 ~eL~~~a~~~al~~agi~~~~Id-----~v~~G~~~~~~~----------------------~---~~~~ar~~~~~~Gl 76 (401)
T PRK08131 27 DDLAATVIRRLLEKSGFPGDDIE-----DVILGCTNQAGE----------------------D---SRNVARNALLLAGL 76 (401)
T ss_pred HHHHHHHHHHHHHHcCCCHHHCC-----EEEEEecccccc----------------------c---cccHHHHHHHhcCC
Confidence 67899999999999999998888 899997532110 0 01123357777888
Q ss_pred C--CCeeeecCCcchHHHHHHHHHHHHHcCCCCEEEEeecCCCcChHH---------------HHH--------------
Q 011989 210 Q--GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALS---------------MAG-------------- 258 (473)
Q Consensus 210 ~--Gp~~~v~~acasg~~Al~~A~~~I~~G~~d~vlv~g~d~~~~~~~---------------~~~-------------- 258 (473)
. -|.++|+.+|+||+.|+..|+++|++|++|++||+|+|+++.... +..
T Consensus 77 p~~~p~~tV~~~CaSG~~Ai~~A~~~I~sG~~dvvlagG~Esms~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (401)
T PRK08131 77 PVTVPGQTVNRLCASGLAAVIDAARAITCGEGDLYLAGGVESMSRAPFVMGKAESAFSRDAKVFDTTIGARFPNPKIVAQ 156 (401)
T ss_pred CCCCceeeeechhhhHHHHHHHHHHHHHCCCCCEEEEEEecCCCCCcccccccccccccCcchhhhhhcccccCcccccc
Confidence 6 489999999999999999999999999999999999998764321 000
Q ss_pred Hhh------hhccccccCC---------------------CC--CCCCcCc-------------cC--------------
Q 011989 259 FCK------SRALTTKYNG---------------------TP--QEASRPF-------------DC-------------- 282 (473)
Q Consensus 259 ~~~------~~~~~~~~~~---------------------~~--~~~~~pf-------------d~-------------- 282 (473)
+.. ...+..+|+- .+ .....|. +.
T Consensus 157 ~a~~~mg~~ae~~~~~ygitre~~d~vA~~S~~~~~~a~~~~~~~~~i~pi~v~~~~~~~~~~v~~De~~r~~~~~e~L~ 236 (401)
T PRK08131 157 YGNDSMPETGDNVAAEFGISREDADRFAAQSQAKYQAAKEEGFFADEITPIEVPQGRKLPPKLVAEDEHPRPSSTVEALT 236 (401)
T ss_pred cccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhCCCCCCceeeEEeccccCCCceEEecCCCCCCCCCHHHHh
Confidence 000 0000001100 00 0000011 10
Q ss_pred ------------CCCceeeccceEEEEEccchHHHhcCCeEEEEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHHcCC
Q 011989 283 ------------GRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGL 350 (473)
Q Consensus 283 ------------~~~G~~~geGaaavvL~~~~~A~~~g~~~~a~i~g~~~~~d~~~~~~~~~~~~~~~~a~~~al~~agl 350 (473)
..+..-++|||+++||.+++.|++++.+++++|.|++...+ .|.....+...+++++|+++||
T Consensus 237 ~l~p~f~~g~lt~~~~s~~~DGAaa~vl~s~~~a~~~~~~p~~~i~g~~~~~~-----~~~~~~~~~~~a~~~a~~~agl 311 (401)
T PRK08131 237 KLKPLFEGGVVTAGNASGINDGAAALLIGSRAAGEKYGLKPMARILSSAAAGV-----EPRIMGIGPVEAIKKALARAGL 311 (401)
T ss_pred cCCCCCCCCCccCCcCCCCCCceEEEEEeeHHHHHHcCCCceEEEEEEEEecc-----CCccccchHHHHHHHHHHHcCC
Confidence 00233479999999999999999999889999999998864 2333344668999999999999
Q ss_pred CCCCccEEEEcCCCCCCCCHHHHHHHHHHhhcccCCC---Cceeecccc--chhhhHHhHHHHHHHHHHHHHHhCccCCC
Q 011989 351 QSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSG---SLAFSSTKG--AIGHLLGAAGAVEAIFAVLAIHHGVAPLT 425 (473)
Q Consensus 351 ~~~dId~v~~hgtgt~~~D~~E~~a~~~~~~~~~~~~---~~~v~s~k~--~~Gh~~~AsG~~~li~~~~~l~~~~ipp~ 425 (473)
+++|||++|+| |++++..+...+.++. ..|+|..++ .+|||.||+|+..++++++||+..-
T Consensus 312 ~~~did~~ei~----------d~Fa~~~l~~~e~lg~~~~~~~vN~~GG~la~GhP~gAtG~~~~~el~~qL~~~~---- 377 (401)
T PRK08131 312 TLDDMDIIEIN----------EAFASQVLGCLKGLGVDFDDPRVNPNGGAIAVGHPLGASGARLALTAARELQRRG---- 377 (401)
T ss_pred CHHHCCeehhc----------cHHHHHHHHHHHHcCCCCCCCCccCCccHHhcCCchhhhHHHHHHHHHHHHHhcC----
Confidence 99999999999 9999998886665542 578999999 5799999999999999999998521
Q ss_pred CCCCCCCCCCCCCCCccccCCCCCCcEEEEeccccccceeeEEEeec
Q 011989 426 LNLAKPDPIFNDNFMPLTASKDMPISAALSNSFGFGGTNASLLFTKC 472 (473)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~g~gG~~~~~vl~~~ 472 (473)
.++.++....-||...++|||+.
T Consensus 378 ------------------------~~~~~~~~~~ggg~g~a~i~e~~ 400 (401)
T PRK08131 378 ------------------------KRYAVVSLCIGVGQGLAMVIERV 400 (401)
T ss_pred ------------------------CCceEEEEEecCChhhEEEEEec
Confidence 13345555666788888999874
|
|
| >PRK06059 lipid-transfer protein; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=4e-25 Score=223.88 Aligned_cols=282 Identities=16% Similarity=0.200 Sum_probs=193.9
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCceeEEEecCCCChhhHHHHHHHHHHhccccCCCcchhhhhhhHHHHHHHHhcC
Q 011989 129 FIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYG 208 (473)
Q Consensus 129 ~~~la~~aa~~Al~dAgl~~~~~~~~~~~gvivg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lg 208 (473)
...|+.+|+++||+|||+++++++ .|++++.... ....+..+..++..+|
T Consensus 23 ~~~La~~A~~~Al~dAgl~~~dId-----~vi~~~~~~~-------------------------~~~~~~~a~~va~~lG 72 (399)
T PRK06059 23 FVEYGVVAARAALADAGLDWRDVQ-----LVVGADTIRN-------------------------GYPGFVAGATFAQALG 72 (399)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCC-----EEEEEeccCC-------------------------ccCCccHHHHHHHHhC
Confidence 378999999999999999887776 6776653311 0011123457889999
Q ss_pred CCC-CeeeecCCcchHHHHHHHHHHHHHcCCCCEEEEeecCCCcChH--H----------HH-----HHh---hhhc---
Q 011989 209 FQG-PNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDAL--S----------MA-----GFC---KSRA--- 264 (473)
Q Consensus 209 l~G-p~~~v~~acasg~~Al~~A~~~I~~G~~d~vlv~g~d~~~~~~--~----------~~-----~~~---~~~~--- 264 (473)
+++ |.++++.+|+|++.||.+|+++|++|++|+|||+|+|.+.... . +. .+. ....
T Consensus 73 ~~~~~~~~v~~~Casg~~al~~A~~~I~sG~~~~vLvvg~e~~s~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~al~a~ 152 (399)
T PRK06059 73 WNGAPVSSSYAACASGSQALQSARAQILAGLCDVALVVGADTTPKGFFAPVGGERPDDPDWLRFHLIGATNPVYFALLAR 152 (399)
T ss_pred CCCCceecccchhHHHHHHHHHHHHHHHCCCCCEEEEEEEcccCCCCCcccccccccccchhhcccCCCccHHHHHHHHH
Confidence 988 8999999999999999999999999999999999999755310 0 00 000 0000
Q ss_pred -cccccCC------------------CCCCCC-cCcc--------------CCCCceeeccceEEEEEccchHHHhc--C
Q 011989 265 -LTTKYNG------------------TPQEAS-RPFD--------------CGRDGFVIGEGSGVLVLEELEHAKKR--G 308 (473)
Q Consensus 265 -~~~~~~~------------------~~~~~~-~pfd--------------~~~~G~~~geGaaavvL~~~~~A~~~--g 308 (473)
+.++++. .|+... .|++ ...+-..++|||+|+||.+++.|++. +
T Consensus 153 ~~~~~yg~s~e~~a~v~~~~~~~a~~Np~A~~r~~~t~e~v~~s~~i~~Pl~~~d~~~~~DGAaA~vl~s~~~A~~l~~~ 232 (399)
T PRK06059 153 RRMDLYGATVEDFAQVKVKNARHGLLNPNARYRKEVTVEDVLASPVVSDPLRLLDICATSDGAAALIVASKSFARRHLGS 232 (399)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHccCcHhhcCCCCCHHHHhcCCcccCCCchhhcCCCCCceEEEEEecHHHHHhhccc
Confidence 0000000 111110 0111 01122337999999999999999988 5
Q ss_pred CeEEEEEEEEEEecCCCC--C-CCCCC-----------ChHHHHHHHHHHHHHcCCCCCCccEEEEcCCCCCCCCHHHHH
Q 011989 309 AKIYAEVRGYGMSGDAHH--I-TQPHI-----------DGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEAT 374 (473)
Q Consensus 309 ~~~~a~i~g~~~~~d~~~--~-~~~~~-----------~~~~~~~a~~~al~~agl~~~dId~v~~hgtgt~~~D~~E~~ 374 (473)
.++.++|.+++...+... . ..++. .......+++++|+++|++++|||++|+| |++
T Consensus 233 ~~~~v~I~g~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~a~~~agl~~~Did~~El~----------d~f 302 (399)
T PRK06059 233 VAGVPSVRAISTVTPRYPQHLPELPDIATDSTAAVPAPERVFKDQILDAAYAEAGIGPEDLSLAEVY----------DLS 302 (399)
T ss_pred cCCceEEEEEEEecccccccccccccccccccccccccccHHHHHHHHHHHHHcCCCHHHCcEEeec----------ccC
Confidence 555689999987653321 1 11111 11123578999999999999999999999 666
Q ss_pred HHHHHhhccc-------------------CCCCceeecccc--chhhhHHhHHHHHHHHHHHHHHhCccCCCCCCCCCCC
Q 011989 375 AIRTVFSDHA-------------------TSGSLAFSSTKG--AIGHLLGAAGAVEAIFAVLAIHHGVAPLTLNLAKPDP 433 (473)
Q Consensus 375 a~~~~~~~~~-------------------~~~~~~v~s~k~--~~Gh~~~AsG~~~li~~~~~l~~~~ipp~~~~~~~~~ 433 (473)
++..+...+. .++++|||...+ ..||+.|++|+..++++++||+...
T Consensus 303 ~~~~l~~~e~lGl~~~G~~~~~~~~G~~~~~G~~pvN~~GG~la~Ghp~gatG~~~~~e~~~qLrg~a------------ 370 (399)
T PRK06059 303 TALELDWYEHLGLCPKGEAEALLRSGATTLGGRIPVNPSGGLACFGEAIPAQAIAQVCELTWQLRGQA------------ 370 (399)
T ss_pred hHHHHHHHHHcCCCCCCcHHHHHHCCCccCCCCeeecCCCccccCCccCCccHHHHHHHHHHHhccCc------------
Confidence 6655554222 234679999988 4599999999999999999998743
Q ss_pred CCCCCCCccccCCCCCCcEEEEeccccccceeeEEEee
Q 011989 434 IFNDNFMPLTASKDMPISAALSNSFGFGGTNASLLFTK 471 (473)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~l~~s~g~gG~~~~~vl~~ 471 (473)
...|..+.+.+++.+.|.+|..+++||++
T Consensus 371 ---------g~~Qv~~a~~gl~~~~g~~g~~~~~~l~~ 399 (399)
T PRK06059 371 ---------GGRQVEGARVGITANQGLFGHGSSVIVAR 399 (399)
T ss_pred ---------CCccCCCccEEEEeccCCcccceEEEecC
Confidence 22334456788888888889999999875
|
|
| >PRK08313 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.6e-25 Score=220.23 Aligned_cols=282 Identities=17% Similarity=0.156 Sum_probs=195.4
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCceeEEEecCCCChhhHHHHHHHHHHhccccCCCcchhhhhhhHHHHHHHHhcC
Q 011989 129 FIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYG 208 (473)
Q Consensus 129 ~~~la~~aa~~Al~dAgl~~~~~~~~~~~gvivg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lg 208 (473)
...|+.+|+++||+|||+++++++ ++++++.. . .+.+. ...+..++..+|
T Consensus 24 ~~eL~~eAa~~Al~dAgl~~~dID-----~iv~~~~~-~----------------------~~~~~--~~~~~~va~~LG 73 (386)
T PRK08313 24 MAGLVREAIDRALADAGLTWDDID-----AVVVGKAP-D----------------------FFEGV--MMPELFLADALG 73 (386)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCC-----EEEEeccc-c----------------------ccccc--cCchHHHHHhcC
Confidence 367999999999999999988887 88887621 1 00110 011246889999
Q ss_pred CCC-CeeeecCCcchHHHHHHHHHHHHHcCCCCEEEEeecCCCcChH--------------------HHHHH------hh
Q 011989 209 FQG-PNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDAL--------------------SMAGF------CK 261 (473)
Q Consensus 209 l~G-p~~~v~~acasg~~Al~~A~~~I~~G~~d~vlv~g~d~~~~~~--------------------~~~~~------~~ 261 (473)
+++ +.+.++++|+++..++..|+++|++|.+|+|||+++|.+.... .+..+ ..
T Consensus 74 l~~~~~~~v~~~casg~~al~~A~~~I~sG~~~~vLVvg~e~~s~~~~~~~~~~~~~~~~~~g~~~~~~~al~a~~ym~~ 153 (386)
T PRK08313 74 ATGKPLIRVHTAGSVGGSTAVVAASLVQSGVYRRVLAVAWEKQSESNAMWALSIPVPFTKPVGAGAGGYFAPHVRAYIRR 153 (386)
T ss_pred CCCCceEEEeccCHHHHHHHHHHHHHHHCCCCCEEEEEEEEEccCCccccccccccccccccccchHHHHHHHHHHHHHH
Confidence 986 8889999999999999999999999999999999998753320 00000 00
Q ss_pred hhccccc-----------cCCCCCCCC-cC-cc--------------CCCCceeeccceEEEEEccchHHHhcCCeEEEE
Q 011989 262 SRALTTK-----------YNGTPQEAS-RP-FD--------------CGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAE 314 (473)
Q Consensus 262 ~~~~~~~-----------~~~~~~~~~-~p-fd--------------~~~~G~~~geGaaavvL~~~~~A~~~g~~~~a~ 314 (473)
.+...+. ....|.... +| ++ ...+-..++|||+|+||.+++.|++.+.++.++
T Consensus 154 ~G~~~e~la~vav~~~~~A~~NP~A~~r~~~~t~e~v~~s~~ia~Pl~~~d~~~~~DGAaAvvl~s~e~a~~l~~~~~~~ 233 (386)
T PRK08313 154 SGAPEHIGAMVAVKDRLNGAKNPYAHLHQPDITLEKVMASQMLWDPIRFDETCPSSDGACAVVIGDEEAADAAAGRPVAW 233 (386)
T ss_pred HCcCHHHHHHHHHHHHHHHccCcHHhcCCCCCCHHHHhcCCcccCCCchhccCCCCCceEEEEEecHHHHHhcCCCCCeE
Confidence 0100000 000111111 11 21 112333479999999999999999887777789
Q ss_pred EEEEEEecCCCCCC-CCCCChHHHHHHHHHHHHHcCCC--CCCccEEEEcCCCCCCCCHHHHHHHHHHhhccc-------
Q 011989 315 VRGYGMSGDAHHIT-QPHIDGKGAILAMTRALKQSGLQ--SHQVDYVNAHATSTPLGDTVEATAIRTVFSDHA------- 384 (473)
Q Consensus 315 i~g~~~~~d~~~~~-~~~~~~~~~~~a~~~al~~agl~--~~dId~v~~hgtgt~~~D~~E~~a~~~~~~~~~------- 384 (473)
|.|++...+..... .+.....+...+++++|+++|++ ++|||++|+| |++++..+...+.
T Consensus 234 I~g~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~Agi~~p~~Did~~el~----------d~F~~~~~~~~e~lGl~~~G 303 (386)
T PRK08313 234 IHGTAMRTEPLAFAGRDQVNPQAGRDAAAALWKAAGITDPRDEIDVAEIY----------VPFSWFEPMWLENLGFAPEG 303 (386)
T ss_pred EEEEEEEecCcccccccccccHHHHHHHHHHHHHcCCCCChhhCCEEEec----------cCChHHHHHHHHHcCCCCCC
Confidence 99999887654332 22233456778999999999998 6999999999 5555554443222
Q ss_pred ------------CCCCceeeccccch-hhhHHhHHHHHHHHHHHHHHhCccCCCCCCCCCCCCCCCCCCccccCCCCCCc
Q 011989 385 ------------TSGSLAFSSTKGAI-GHLLGAAGAVEAIFAVLAIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPIS 451 (473)
Q Consensus 385 ------------~~~~~~v~s~k~~~-Gh~~~AsG~~~li~~~~~l~~~~ipp~~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (473)
.++++|||...+.+ ||+.|++|+.+++++++||+... ...|..+.+
T Consensus 304 ~~~~~~~~G~~~~~G~~pvN~~GG~l~g~p~gatG~~~~~e~~~qlrG~a---------------------g~rQv~~a~ 362 (386)
T PRK08313 304 EGWKLTEAGETAIGGRLPVNPSGGVLSSNPIGASGMIRFAEAALQVMGKA---------------------GEHQVDGAR 362 (386)
T ss_pred chHHHHHCCCcCCCCCccccCCCcccccCCCcHHHHHHHHHHHHHhcccc---------------------cCCcCCCcc
Confidence 23678999999866 99999999999999999999743 223444577
Q ss_pred EEEEecccc-ccceeeEEEee
Q 011989 452 AALSNSFGF-GGTNASLLFTK 471 (473)
Q Consensus 452 ~~l~~s~g~-gG~~~~~vl~~ 471 (473)
.+|+++.|. +...+.+||+.
T Consensus 363 ~~l~~~~Gg~~~~~~~~v~~~ 383 (386)
T PRK08313 363 KALGHAYGGGSQFFSMWVVGS 383 (386)
T ss_pred EEEEeccCCcceEEEEEEEec
Confidence 899998873 34555566554
|
|
| >PRK06954 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.1e-24 Score=219.62 Aligned_cols=270 Identities=20% Similarity=0.216 Sum_probs=190.5
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCceeEEEecCCCChhhHHHHHHHHHHhccccCCCcchhhhhhhHHHHHHHHhcC
Q 011989 129 FIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYG 208 (473)
Q Consensus 129 ~~~la~~aa~~Al~dAgl~~~~~~~~~~~gvivg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lg 208 (473)
...|+.+|+++||+|||+++++++ .|++|+..... . ...++...+..+|
T Consensus 31 ~~eL~~~a~~~aL~~Agi~~~dID-----~vi~G~~~~~~-----------------------~---~~~~~~~~~l~ag 79 (397)
T PRK06954 31 APQLGAAAIAAAVERAGLKPEQID-----EVVMGCVLPAG-----------------------Q---GQAPARQAALGAG 79 (397)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHcC-----EEEEEecCCCc-----------------------c---chHHHHHHHHcCC
Confidence 378999999999999999998887 89998754211 0 0112222334445
Q ss_pred CC--CCeeeecCCcchHHHHHHHHHHHHHcCCCCEEEEeecCCCcChHH----------------HHHH--hh----h--
Q 011989 209 FQ--GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALS----------------MAGF--CK----S-- 262 (473)
Q Consensus 209 l~--Gp~~~v~~acasg~~Al~~A~~~I~~G~~d~vlv~g~d~~~~~~~----------------~~~~--~~----~-- 262 (473)
+. -|+++|+.+|+||+.|+..|+++|++|++|++||+|+|.++.... ...+ .. .
T Consensus 80 ~~~~~p~~~V~~aCaSG~~Av~~A~~~I~sG~~d~vLv~G~E~ms~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (397)
T PRK06954 80 LPLSVGCTTVNKMCGSGMRAAMFAHDMLVAGSVDVIVAGGMESMTNAPYLLPKARGGMRMGHGQVLDHMFLDGLEDAYDK 159 (397)
T ss_pred CCCCccEeeccccchHHHHHHHHHHHHHHCCCCCEEEEEeeeccCCCcccCcccccccccCcchhhhhhccccccccccc
Confidence 53 478999999999999999999999999999999999998763210 0000 00 0
Q ss_pred --------hccccccCC-------------------CCC----CCCcCccCC----------------------------
Q 011989 263 --------RALTTKYNG-------------------TPQ----EASRPFDCG---------------------------- 283 (473)
Q Consensus 263 --------~~~~~~~~~-------------------~~~----~~~~pfd~~---------------------------- 283 (473)
..+.++++- .+. ....|+...
T Consensus 160 ~~~~~~~a~~~~~~ygitre~~d~~A~~s~~~a~~a~~~~~~~~~~~pv~v~~~~~~~~v~~D~~pr~~~~~~l~~l~~~ 239 (397)
T PRK06954 160 GRLMGTFAEECAGEYGFTREAQDAFAIESLARAKRANEDGSFAWEIAPVTVAGKKGDTVIDRDEQPFKANPEKIPTLKPA 239 (397)
T ss_pred CCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHcCCCCceEeeEEeccCCCCeEeccCCCcCCCCHHHHhCCCCc
Confidence 000001100 000 000111100
Q ss_pred --CCc-------eeeccceEEEEEccchHHHhcCCeEEEEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCC
Q 011989 284 --RDG-------FVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQ 354 (473)
Q Consensus 284 --~~G-------~~~geGaaavvL~~~~~A~~~g~~~~a~i~g~~~~~d~~~~~~~~~~~~~~~~a~~~al~~agl~~~d 354 (473)
.+| ..++|||+++||++++.|++++.+++++|.|++.... .+.....+...+++++|+++||+++|
T Consensus 240 f~~~g~lt~~~~~~~~DGAaa~vl~s~~~a~~~~~~p~~~i~g~~~~~~-----~~~~~~~~~~~a~~~al~~agl~~~D 314 (397)
T PRK06954 240 FSKTGTVTAANSSSISDGAAALVMMRASTAKRLGLAPLARVVGHSTFAQ-----APSKFTTAPVGAIRKLFEKNGWRAAE 314 (397)
T ss_pred cCCCCcEEccccCCCCCceEEEEEecHHHHHHCCCCceEEEEEEEeccc-----CcccccchHHHHHHHHHHHcCCCHHH
Confidence 012 2269999999999999999999999889998876432 22222235578999999999999999
Q ss_pred ccEEEEcCCCCCCCCHHHHHHHHHHhhcccCC---CCceeeccccchhhhHHhHHHHHHHHHHHHHHhCccCCCCCCCCC
Q 011989 355 VDYVNAHATSTPLGDTVEATAIRTVFSDHATS---GSLAFSSTKGAIGHLLGAAGAVEAIFAVLAIHHGVAPLTLNLAKP 431 (473)
Q Consensus 355 Id~v~~hgtgt~~~D~~E~~a~~~~~~~~~~~---~~~~v~s~k~~~Gh~~~AsG~~~li~~~~~l~~~~ipp~~~~~~~ 431 (473)
||++|+| |++++..++..+.++ .++.++..+..+|||.||+|+..+++++++|+..
T Consensus 315 id~~ei~----------d~fa~~~l~~~e~lg~~~~~vN~~GG~~a~Ghp~gasG~~~~~~~~~qL~~~----------- 373 (397)
T PRK06954 315 VDLFEIN----------EAFAVVTMAAMKEHGLPHEKVNVNGGACALGHPIGASGARILVTLIGALRAR----------- 373 (397)
T ss_pred CCEEehh----------hHHHHHHHHHHHHhCCCcccCCcCCChHHhcccHHHHHHHHHHHHHHHHHhc-----------
Confidence 9999999 999988886554432 3455556666889999999999999999999851
Q ss_pred CCCCCCCCCccccCCCCCCcEEEEeccccccceeeEEEeec
Q 011989 432 DPIFNDNFMPLTASKDMPISAALSNSFGFGGTNASLLFTKC 472 (473)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~~~l~~s~g~gG~~~~~vl~~~ 472 (473)
..++.+++..+-||.-.++|||+.
T Consensus 374 -----------------~g~~~v~~~c~~gg~g~a~~~e~~ 397 (397)
T PRK06954 374 -----------------GGKRGVASLCIGGGEATAMGIELI 397 (397)
T ss_pred -----------------CCCeEEEEEccccchhhEEEEEeC
Confidence 134567778888999999999863
|
|
| >PRK06065 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.3e-24 Score=218.03 Aligned_cols=279 Identities=17% Similarity=0.164 Sum_probs=189.4
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCceeEEEecCCCChhhHHHHHHHHHHhccccCCCcchhhhhhhHHHHHHHHhcC
Q 011989 129 FIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYG 208 (473)
Q Consensus 129 ~~~la~~aa~~Al~dAgl~~~~~~~~~~~gvivg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lg 208 (473)
...|+.+|+++||+|||+++++++ ++++++.... +.+ ....+..++..+|
T Consensus 29 ~~~L~~~A~~~Al~dagl~~~dID-----~~i~~~~~~~-----------------------~~~--~~~~a~~l~~~lG 78 (392)
T PRK06065 29 PQELAWEAASKALDEAGLELKDID-----CVVIGSAPDA-----------------------FDG--VHMKGEYLSHGSG 78 (392)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCC-----EEEEeccCCc-----------------------ccc--cccHHHHHHHHcC
Confidence 467999999999999999998887 8888752110 000 1223446888888
Q ss_pred CCC-CeeeecCCcchHHHHHHHHHHHHHcCCCCEEEEeecCCCcChH----HH--------------------HHHhhhh
Q 011989 209 FQG-PNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDAL----SM--------------------AGFCKSR 263 (473)
Q Consensus 209 l~G-p~~~v~~acasg~~Al~~A~~~I~~G~~d~vlv~g~d~~~~~~----~~--------------------~~~~~~~ 263 (473)
+.+ |.+.|+++|+|+..+|..|+++|++|.+|+|||+++|.+.... .. ..+...+
T Consensus 79 ~~~~~~~~V~~~gasG~~al~~A~~~I~sG~ad~vLVvg~e~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~~~~Al~a~r 158 (392)
T PRK06065 79 GIRKPVSRVYVGGATGVMTAIAGWYHVASGLCQKVLAVAEEKMSPARPHPQAVFRYIWDPILEKPLNPNLIWIFAMEMHR 158 (392)
T ss_pred CCCCCeEEEecCchhHHHHHHHHHHHHhCCCCCEEEEEEeecccccccchhHHHhhhccchhccCCCccHHHHHHHHHHH
Confidence 874 8999999999999999999999999999999999998753210 00 0000000
Q ss_pred ccccccCC------------------CCCCC-CcCcc--------------CCCCceeeccceEEEEEccchHHHhcCCe
Q 011989 264 ALTTKYNG------------------TPQEA-SRPFD--------------CGRDGFVIGEGSGVLVLEELEHAKKRGAK 310 (473)
Q Consensus 264 ~~~~~~~~------------------~~~~~-~~pfd--------------~~~~G~~~geGaaavvL~~~~~A~~~g~~ 310 (473)
.+. +++. .|... .+|.+ ...+-..++|||+|+||.+++.|++.+.+
T Consensus 159 ym~-~yG~~~e~lA~vav~~~~~A~~NP~A~~r~~lt~e~vl~s~~ia~Pl~l~d~~~~~DGAaA~vl~s~e~A~~l~~~ 237 (392)
T PRK06065 159 YMA-TYGIKKEEIALVSVKNKRNALNNPYAQLGSKITVEDVLKSEVLVWPVQLLDVSPVSDGAAAIVLASEDLARRYTDT 237 (392)
T ss_pred HHH-HHCcCHHHHHHHHHHHHHhhccCchhhhcCCCCHHHHhcCCcccCCCchhhcCCCCCceEEEEEeCHHHHHhcCCC
Confidence 000 0000 11000 00111 01122347999999999999999988766
Q ss_pred EEEEEEEEEEecCCCCCCCC-CCChHHHHHHHHHHHHHcCCCC--CCccEEEEcCCCCCCCCHHHHHHHHHHhhccc---
Q 011989 311 IYAEVRGYGMSGDAHHITQP-HIDGKGAILAMTRALKQSGLQS--HQVDYVNAHATSTPLGDTVEATAIRTVFSDHA--- 384 (473)
Q Consensus 311 ~~a~i~g~~~~~d~~~~~~~-~~~~~~~~~a~~~al~~agl~~--~dId~v~~hgtgt~~~D~~E~~a~~~~~~~~~--- 384 (473)
+ ++|.|++...+....... .........+++++|+++|+++ +|||++|+| |++++..+...+.
T Consensus 238 ~-v~I~g~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~aGi~~p~~diD~~ei~----------D~Fs~~~l~~~E~lG~ 306 (392)
T PRK06065 238 P-VWVEGVGWTLDNTEWPNRDLAYPRYVEFAARMAYKMAGIERPRKEIDVAEPY----------DPFDYKELHHLEGLQL 306 (392)
T ss_pred C-EEEEEEEEecCccccccccccccHHHHHHHHHHHHHcCCCCchhhCcEEEec----------CCChHHHHHHHHHcCC
Confidence 6 579999887665432221 1223445689999999999985 999999999 5554444332221
Q ss_pred ----------------CCCCceeecccc--chhhhHHhHHHHHHHHHHHHHHhCccCCCCCCCCCCCCCCCCCCccccCC
Q 011989 385 ----------------TSGSLAFSSTKG--AIGHLLGAAGAVEAIFAVLAIHHGVAPLTLNLAKPDPIFNDNFMPLTASK 446 (473)
Q Consensus 385 ----------------~~~~~~v~s~k~--~~Gh~~~AsG~~~li~~~~~l~~~~ipp~~~~~~~~~~~~~~~~~~~~~~ 446 (473)
.++++|+|...+ ..||+.+|+|+.+++++++||+... ...|
T Consensus 307 ~~~G~~~~~~~~g~~~~~G~~pvN~~GG~la~Ghp~gatG~~~~~e~~~QLrg~a---------------------g~rQ 365 (392)
T PRK06065 307 AKRGEAPKLLKEGVFDIDGDIPSSPSGGLLGVGNPIAAAGLMKVISIYWQLKGTA---------------------GKMQ 365 (392)
T ss_pred CCCCcHHHHHHCCCccCCCCeeecCCCccccCCCCccHHHHHHHHHHHHHHhccc---------------------cCCc
Confidence 236789998888 4699999999999999999999743 2223
Q ss_pred CCCC-cEEEEeccc-cccceeeEEEe
Q 011989 447 DMPI-SAALSNSFG-FGGTNASLLFT 470 (473)
Q Consensus 447 ~~~~-~~~l~~s~g-~gG~~~~~vl~ 470 (473)
..+. +.++++++| .+..++.+||+
T Consensus 366 v~~a~~~~l~~~~Gg~~~~~~~~il~ 391 (392)
T PRK06065 366 VKKPVHTGVAQAWGDLMQAGTVIVLR 391 (392)
T ss_pred CCCccceeEEeccccccceeEEEEec
Confidence 3445 789998887 44455566664
|
|
| >cd00829 SCP-x_thiolase Thiolase domain associated with sterol carrier protein (SCP)-x isoform and related proteins; SCP-2 has multiple roles in intracellular lipid circulation and metabolism | Back alignment and domain information |
|---|
Probab=99.93 E-value=8.6e-25 Score=220.58 Aligned_cols=274 Identities=23% Similarity=0.300 Sum_probs=194.9
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCceeEEEecCCCChhhHHHHHHHHHHhccccCCCcchhhhhhhHHHHHHHHhcC
Q 011989 129 FIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYG 208 (473)
Q Consensus 129 ~~~la~~aa~~Al~dAgl~~~~~~~~~~~gvivg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lg 208 (473)
..+|+.+|+++||+|+|+++++++ .+++++..... ....++..++..+|
T Consensus 16 ~~eL~~~A~~~Al~dagl~~~~Id-----~vi~g~~~~~~--------------------------~~~~~a~~va~~lG 64 (375)
T cd00829 16 PLELAAEAARAALDDAGLEPADID-----AVVVGNAAGGR--------------------------FQSFPGALIAEYLG 64 (375)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCC-----EEEEecccccc--------------------------cccchHHHHHHHcC
Confidence 578999999999999999887777 88888743210 01234567899999
Q ss_pred CC-CCeeeecCCcchHHHHHHHHHHHHHcCCCCEEEEeecCCCcChHHHHHHh------------hh---------hccc
Q 011989 209 FQ-GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFC------------KS---------RALT 266 (473)
Q Consensus 209 l~-Gp~~~v~~acasg~~Al~~A~~~I~~G~~d~vlv~g~d~~~~~~~~~~~~------------~~---------~~~~ 266 (473)
+. .|.++++.+|+|++.+|.+|+++|++|++|++||+|+|.+........+. .. ....
T Consensus 65 l~~~~~~~v~~~c~sg~~al~~Aa~~I~sG~~~~vlv~g~e~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~a 144 (375)
T cd00829 65 LLGKPATRVEAAGASGSAAVRAAAAAIASGLADVVLVVGAEKMSDVPTGDEAGGRASDLEWEGPEPPGGLTPPALYALAA 144 (375)
T ss_pred CCCcceeeEeCccHHHHHHHHHHHHHHHhCCCCEEEEEEEeecccCcccchhhccccchhhhhcccccCCChHHHHHHHH
Confidence 95 48999999999999999999999999999999999999765431100000 00 0000
Q ss_pred ----cccCC------------------CCCC----------------CCcCccCCCCceeeccceEEEEEccchHHHhcC
Q 011989 267 ----TKYNG------------------TPQE----------------ASRPFDCGRDGFVIGEGSGVLVLEELEHAKKRG 308 (473)
Q Consensus 267 ----~~~~~------------------~~~~----------------~~~pfd~~~~G~~~geGaaavvL~~~~~A~~~g 308 (473)
.+++. .|.. .+.|+. ..+...++||++++||++++.|+++
T Consensus 145 ~~~~~~~g~t~e~~~~va~~~~~~A~~np~A~~~~~~t~d~~~~~~~i~~pl~-~~~~~~~~DGaaa~vl~s~~~a~~~- 222 (375)
T cd00829 145 RRYMHRYGTTREDLAKVAVKNHRNAARNPYAQFRKPITVEDVLNSRMIADPLR-LLDCCPVSDGAAAVVLASEERAREL- 222 (375)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHhcCChhhcCCCCCHHHHhcCCcccCCCc-hhhcCCCCCceeEEEEecHHHHhhc-
Confidence 00000 0000 011221 1234458999999999999999988
Q ss_pred CeEEEEEEEEEEecCCCCCCCCCC--ChHHHHHHHHHHHHHcCCCCCCccEEEEcCCCCCCCCHHHHHHHHHHhhccc--
Q 011989 309 AKIYAEVRGYGMSGDAHHITQPHI--DGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHA-- 384 (473)
Q Consensus 309 ~~~~a~i~g~~~~~d~~~~~~~~~--~~~~~~~a~~~al~~agl~~~dId~v~~hgtgt~~~D~~E~~a~~~~~~~~~-- 384 (473)
.+++++|.|++...+..+....+. ...+...+++++|+++|++++|||++|+| |++++..+...+.
T Consensus 223 ~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~Agl~~~did~~ei~----------d~F~~~~l~~~e~lG 292 (375)
T cd00829 223 TDRPVWILGVGAASDTPSLSERDDFLSLDAARLAARRAYKMAGITPDDIDVAELY----------DCFTIAELLALEDLG 292 (375)
T ss_pred CCCCeEEEEEEEecCCccccccccccccHHHHHHHHHHHHHcCCCHHHCCEEEec----------CcChHHHHHHHHHcC
Confidence 667799999999888766544332 55677899999999999999999999999 5555444433222
Q ss_pred -----------------CCCCceeeccccc--hhhhHHhHHHHHHHHHHHHHHhCccCCCCCCCCCCCCCCCCCCccccC
Q 011989 385 -----------------TSGSLAFSSTKGA--IGHLLGAAGAVEAIFAVLAIHHGVAPLTLNLAKPDPIFNDNFMPLTAS 445 (473)
Q Consensus 385 -----------------~~~~~~v~s~k~~--~Gh~~~AsG~~~li~~~~~l~~~~ipp~~~~~~~~~~~~~~~~~~~~~ 445 (473)
.++.+||+..++. +||+.+++|+..++++++||+... ...
T Consensus 293 l~~~g~~~~~~~~g~~~~~G~~pvN~~GG~la~Ghp~gatG~~~~~e~~~qlrg~a---------------------g~~ 351 (375)
T cd00829 293 FCEKGEGGKLVREGDTAIGGDLPVNTSGGLLSKGHPLGATGLAQAVEAVRQLRGEA---------------------GAR 351 (375)
T ss_pred CCCCCchHHHHHCCCccCCCCccccCCCchhcCCCCccHHHHHHHHHHHHHhcCCc---------------------ccc
Confidence 2245689999884 699999999999999999999743 122
Q ss_pred CCCCCcEEEEeccccccceee
Q 011989 446 KDMPISAALSNSFGFGGTNAS 466 (473)
Q Consensus 446 ~~~~~~~~l~~s~g~gG~~~~ 466 (473)
|..+.+.+++++.|-.+.+..
T Consensus 352 qv~~~~~~l~~~~gg~~~~~~ 372 (375)
T cd00829 352 QVPGARVGLAHNIGGTGSAAV 372 (375)
T ss_pred cCCCccEEEEecCCCccceEE
Confidence 333577888887765444333
|
The N-terminal presequence in the SCP-x isoform represents a peroxisomal 3-ketacyl-Coa thiolase specific for branched-chain acyl CoAs, which is proteolytically cleaved from the sterol carrier protein. |
| >PTZ00455 3-ketoacyl-CoA thiolase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.7e-24 Score=218.20 Aligned_cols=282 Identities=17% Similarity=0.198 Sum_probs=193.4
Q ss_pred HHHHHHHHHHHHHHHcCCCCCC--CCCCCceeEEEecCCCChhhHHHHHHHHHHhccccCCCcchhhhhhhHHHHHHH--
Q 011989 129 FIAYALCAADEALHDAKWLPSD--QGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVS-- 204 (473)
Q Consensus 129 ~~~la~~aa~~Al~dAgl~~~~--~~~~~~~gvivg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia-- 204 (473)
...|+.+|+++||+|||+++.+ ++ .|++|+..+.. +.. ...++..++
T Consensus 48 ~~eL~~~a~~~al~~agl~~~d~~ID-----~vi~G~~~~~~----------------------~~~--~~~~a~~~~~~ 98 (438)
T PTZ00455 48 LEELLATAIQGTLENTGLDGKAALVD-----KVVVGNFLGEL----------------------FSS--QGHLGPAAVGS 98 (438)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCCcC-----EEEEEeccccc----------------------ccc--ccchHHHHHHh
Confidence 3689999999999999999988 87 88888743210 000 001111222
Q ss_pred -----HhcCCCC-CeeeecCCcchHHHHHHHHHHHHHcCCCCEEEEeecCCCcChHHH----------------------
Q 011989 205 -----MKYGFQG-PNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSM---------------------- 256 (473)
Q Consensus 205 -----~~lgl~G-p~~~v~~acasg~~Al~~A~~~I~~G~~d~vlv~g~d~~~~~~~~---------------------- 256 (473)
..+|+.+ |.++|+.+|+||+.|+..|+++|++|++|+|||+|+|+++.....
T Consensus 99 ~gl~~~~~gl~~~p~~~V~~~caSG~~Ai~~A~~~I~sG~~dvvlv~G~E~ms~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (438)
T PTZ00455 99 LGQSGASNALLYKPAMRVEGACASGGLAVQSAWEALLAGTSDIALVVGVEVQTTVSARVGGDYLARAADYRRQRKLDDFT 178 (438)
T ss_pred ccCcccccccCCCceeEEECcCHHHHHHHHHHHHHHHCCCCCEEEEEEEeecccCcchhhhhhccchhhccccccccCcc
Confidence 4556655 999999999999999999999999999999999999976542100
Q ss_pred -HH-Hhh-hhccccccCC------------------CCCCC--CcCcc--C----------------------CCCceee
Q 011989 257 -AG-FCK-SRALTTKYNG------------------TPQEA--SRPFD--C----------------------GRDGFVI 289 (473)
Q Consensus 257 -~~-~~~-~~~~~~~~~~------------------~~~~~--~~pfd--~----------------------~~~G~~~ 289 (473)
.. +.. .+.+...+.. .|... .+|.. . ..+...+
T Consensus 179 ~~~~~a~~~~ym~~~ggitrE~la~vAvka~~~a~~nP~A~~~~~~~t~~~~~d~~~~~~e~l~s~~i~~pl~~~d~s~~ 258 (438)
T PTZ00455 179 FPCLFAKRMKYIQEHGHFTMEDTARVAAKAYANGNKNPLAHMHTRKLSLEFCTGASDKNPKFLGNETYKPFLRMTDCSQV 258 (438)
T ss_pred hHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHhcCCHhhccCCCCCceeeccccccchhhhcCCcccCcCchhcCCCc
Confidence 00 100 1111111100 11111 01111 0 1122236
Q ss_pred ccceEEEEEccchHHHhcCCeE----EEEEEEEEEecCCCCCCCC--CCChHHHHHHHHHHHHHcCCCCCCccEEEEcCC
Q 011989 290 GEGSGVLVLEELEHAKKRGAKI----YAEVRGYGMSGDAHHITQP--HIDGKGAILAMTRALKQSGLQSHQVDYVNAHAT 363 (473)
Q Consensus 290 geGaaavvL~~~~~A~~~g~~~----~a~i~g~~~~~d~~~~~~~--~~~~~~~~~a~~~al~~agl~~~dId~v~~hgt 363 (473)
+|||+|+||.+++.|++.+.++ .++|.|++...+......+ ..... ...+++++|+++|++++|||++|+|
T Consensus 259 sDGAaA~vl~See~A~~l~~~p~~~~~v~i~g~~~~~~~~~~~~~~~~~~~~-~~~A~~~a~~~AGl~~~DiD~~Ei~-- 335 (438)
T PTZ00455 259 SDGGAGLVLASEEGLQKMGLSPNDSRLVEIKSLACASGNLYEDPPDATRMFT-SRAAAQKALSMAGVKPSDLQVAEVH-- 335 (438)
T ss_pred cccceEEEEecHHHHHhcCCCCCCCccEEEEEEEEecCCcccCccccccchH-HHHHHHHHHHHcCCCHHHCcEeeec--
Confidence 8999999999999999988776 6899999988763321111 22222 3689999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHhhcccCC-------------------CCceeecccc--chhhhHHhHHHHHHHHHHHHHHhCcc
Q 011989 364 STPLGDTVEATAIRTVFSDHATS-------------------GSLAFSSTKG--AIGHLLGAAGAVEAIFAVLAIHHGVA 422 (473)
Q Consensus 364 gt~~~D~~E~~a~~~~~~~~~~~-------------------~~~~v~s~k~--~~Gh~~~AsG~~~li~~~~~l~~~~i 422 (473)
|++++..+...+.++ +++|||...+ .+|||.||+|+..++++++||+...
T Consensus 336 --------daFa~~~l~~~e~lGl~~~G~~~~~~~~G~~~~~G~~pvN~~GG~la~GHP~gAtG~~~v~e~~~QLrg~a- 406 (438)
T PTZ00455 336 --------DCFTIAELLMYEALGIAEYGHAKDLIRNGATALEGRIPVNTGGGLLSFGHPVGATGVKQIMEVYRQMKGQC- 406 (438)
T ss_pred --------ccChHHHHHHHHHcCCCCCCchHHHHhcCCcccCCCceeeCCCchhhcCCCcchHHHHHHHHHHHHHhhcc-
Confidence 888887776544332 3478998888 5699999999999999999998632
Q ss_pred CCCCCCCCCCCCCCCCCCccccCCCCC-CcEEEEeccc-cccceeeEEEee
Q 011989 423 PLTLNLAKPDPIFNDNFMPLTASKDMP-ISAALSNSFG-FGGTNASLLFTK 471 (473)
Q Consensus 423 pp~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~s~g-~gG~~~~~vl~~ 471 (473)
...|..+ .+.+++++.| +++.+++.||+.
T Consensus 407 --------------------g~~Qv~~~~~~gl~~~~Gg~~~~~~~~vl~~ 437 (438)
T PTZ00455 407 --------------------GEYQMKNIPALGATLNMGGDDKTAVSTVLQN 437 (438)
T ss_pred --------------------ccCCCCCcccEEEEeccCCCcceEEEEEEec
Confidence 1223333 5788888877 666677777754
|
|
| >PRK07851 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.1e-24 Score=219.97 Aligned_cols=270 Identities=20% Similarity=0.275 Sum_probs=195.6
Q ss_pred HHHHHHHHHHHHHHc-CCCCCCCCCCCceeEEEecCCCChhhHHHHHHHHHHhccccCCCcchhhhhhhHHHHHHHHhcC
Q 011989 130 IAYALCAADEALHDA-KWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYG 208 (473)
Q Consensus 130 ~~la~~aa~~Al~dA-gl~~~~~~~~~~~gvivg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lg 208 (473)
.+|+.+|+++||+|+ |+++.+++ +|++|+.... ...+ ...+..++..+|
T Consensus 28 ~eL~~~A~~~AL~da~gl~~~dID-----~vv~g~~~~~----------------------~~~g---~~~~~~~a~~lG 77 (406)
T PRK07851 28 DDLAAQMVRAALDKVPALDPTDID-----DLMLGCGLPG----------------------GEQG---FNMARVVAVLLG 77 (406)
T ss_pred HHHHHHHHHHHHHhccCCCHHHCC-----EEEEEccccc----------------------cccc---CCHHHHHHHHcC
Confidence 688999999999997 99999988 8888753210 0000 123457889999
Q ss_pred CCC-CeeeecCCcchHHHHHHHHHHHHHcCCCCEEEEeecCCCcChHH-------------HH---------------HH
Q 011989 209 FQG-PNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALS-------------MA---------------GF 259 (473)
Q Consensus 209 l~G-p~~~v~~acasg~~Al~~A~~~I~~G~~d~vlv~g~d~~~~~~~-------------~~---------------~~ 259 (473)
+++ |+++++.+|+||+.|+..|+++|++|.+|++||+|+|.+..... +. .+
T Consensus 78 l~~~p~~~v~~~caSG~~av~~Aa~~I~sG~~d~vLv~G~e~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (406)
T PRK07851 78 YDFLPGTTVNRYCSSSLQTTRMAFHAIKAGEGDVFISAGVETVSRFAKGNSDSLPDTKNPLFAEAQARTAARAEGGAEAW 157 (406)
T ss_pred CCCCCeeeeeccchhHHHHHHHHHHHHHCCCCCEEEEeeEEecccCcccccccccccCchhhhhcccccccccccccccc
Confidence 976 89999999999999999999999999999999999886432110 00 00
Q ss_pred hh----------hhcc-------------cccc----------------CCC-----------C-------CCCCc-Ccc
Q 011989 260 CK----------SRAL-------------TTKY----------------NGT-----------P-------QEASR-PFD 281 (473)
Q Consensus 260 ~~----------~~~~-------------~~~~----------------~~~-----------~-------~~~~~-pfd 281 (473)
.. .-.+ .+++ ... | +...+ +++
T Consensus 158 ~~~~g~~~~~~~~~amg~~a~~~~~~yg~~re~~~~~a~~s~~~a~~A~~n~~~a~~~~p~~~p~~~~~~~d~~~r~~~t 237 (406)
T PRK07851 158 HDPREDGLLPDVYIAMGQTAENVAQLTGISREEQDEWGVRSQNRAEEAIANGFFEREITPVTLPDGTVVSTDDGPRAGTT 237 (406)
T ss_pred cccccccccccccccHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHCCCCccceeeeecCCCceeCCCCCccCCcC
Confidence 00 0000 0000 000 0 00010 111
Q ss_pred ------------C-----CCCceeeccceEEEEEccchHHHhcCCeEEEEEEEEEEecCCCCCCCCCCChHHHHHHHHHH
Q 011989 282 ------------C-----GRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRA 344 (473)
Q Consensus 282 ------------~-----~~~G~~~geGaaavvL~~~~~A~~~g~~~~a~i~g~~~~~d~~~~~~~~~~~~~~~~a~~~a 344 (473)
. ..+-..++||++++||++++.|++++.+++++|.|++...+ .|+....+...++++|
T Consensus 238 ~e~v~~s~~v~~P~~~lt~~d~~~~~DGaaa~vl~s~e~A~~~~~~~~a~I~g~~~~~~-----~~~~~~~~~~~a~~~a 312 (406)
T PRK07851 238 YEKVSQLKPVFRPDGTVTAGNACPLNDGAAAVVIMSDTKARELGLTPLARIVSTGVSGL-----SPEIMGLGPVEASKQA 312 (406)
T ss_pred HHHHhcCCCccCCCCcEecCcCCccCCceeEEEEccHHHHHHcCCCccEEEEEEEEccC-----CCCccchhHHHHHHHH
Confidence 0 01222379999999999999999999999999999988753 2233344567899999
Q ss_pred HHHcCCCCCCccEEEEcCCCCCCCCHHHHHHHHHHhhcccCC---CCceeeccccchhhhHHhHHHHHHHHHHHHHHhCc
Q 011989 345 LKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATS---GSLAFSSTKGAIGHLLGAAGAVEAIFAVLAIHHGV 421 (473)
Q Consensus 345 l~~agl~~~dId~v~~hgtgt~~~D~~E~~a~~~~~~~~~~~---~~~~v~s~k~~~Gh~~~AsG~~~li~~~~~l~~~~ 421 (473)
|+++|++++|||++|+| |++++..+...+.++ .++.++..+..+||+.|++|+.++++++++|+++
T Consensus 313 l~~Agi~~~did~~ei~----------d~f~~~~l~~le~lg~~~~pvN~~GG~l~~Ghp~gasg~~~~~~~~~qL~~~- 381 (406)
T PRK07851 313 LARAGMSIDDIDLVEIN----------EAFAAQVLPSARELGIDEDKLNVSGGAIALGHPFGMTGARITTTLLNNLQTH- 381 (406)
T ss_pred HHHhCCCHHHCCeehhh----------hHHHHHHHHHHHHhCCCccccCCCCChHhhcCcHHHHHHHHHHHHHHHHHhc-
Confidence 99999999999999999 999988776554433 2444555555889999999999999999999741
Q ss_pred cCCCCCCCCCCCCCCCCCCccccCCCCCCcEEEEeccccccceeeEEEeec
Q 011989 422 APLTLNLAKPDPIFNDNFMPLTASKDMPISAALSNSFGFGGTNASLLFTKC 472 (473)
Q Consensus 422 ipp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~g~gG~~~~~vl~~~ 472 (473)
+-++.|+...+-||.-.++|||++
T Consensus 382 ---------------------------~~~~g~~~~~~~gg~g~a~~~e~~ 405 (406)
T PRK07851 382 ---------------------------DKTFGLETMCVGGGQGMAMVLERL 405 (406)
T ss_pred ---------------------------CCCeEEEEEccccChhhEEEEEec
Confidence 235788889999999999999975
|
|
| >PRK06158 thiolase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.1e-24 Score=216.98 Aligned_cols=273 Identities=20% Similarity=0.220 Sum_probs=189.5
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCceeEEEecCCCChhhHHHHHHHHHHhccccCCCcchhhhhhhHHHHHHHHhcC
Q 011989 129 FIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYG 208 (473)
Q Consensus 129 ~~~la~~aa~~Al~dAgl~~~~~~~~~~~gvivg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lg 208 (473)
...|+.+|+++||+|||+++++++ ++++++.... ++ ...++..+|
T Consensus 28 ~~eL~~eA~~~Al~dAgl~~~dID-----~iv~~~~~~~-----------------------~~-------~~~la~~lG 72 (384)
T PRK06158 28 AMELLAQAAHRALADAGLTMADVD-----GLFTASPDDA-----------------------LW-------GLSVAEYLG 72 (384)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCC-----EEEEecCCCC-----------------------Cc-------HHHHHHHcC
Confidence 368999999999999999988887 8888763100 01 125888899
Q ss_pred CCC-CeeeecCCcchHHHHHHHHHHHHHcCCCCEEEEe-ecCCCcCh---------------------HHHHHHhhhhcc
Q 011989 209 FQG-PNHAAVTACATGAHSIGDAARMIQFGDSDVMVAG-GTESSIDA---------------------LSMAGFCKSRAL 265 (473)
Q Consensus 209 l~G-p~~~v~~acasg~~Al~~A~~~I~~G~~d~vlv~-g~d~~~~~---------------------~~~~~~~~~~~~ 265 (473)
+++ +.+.+.++|+++..+|..|+++|++|.+|+|||+ +.+.+... .....+.....+
T Consensus 73 l~~~~~~~~~~g~~s~~~al~~A~~~I~sG~~d~vLV~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~al~a~~ym 152 (384)
T PRK06158 73 IRPRFVDGTMIGGSSFLAHLLPAALALEAGLCDVALICYGSNQRSAGGKLRSMLDPQPYEAPYKPVNPVSAYALAAARHM 152 (384)
T ss_pred CCCeeeccccCccHHHHHHHHHHHHHHHcCCCCEEEEeeccccccCcccccccccccchhcccCCCCcHHHHHHHHHHHH
Confidence 976 7778889999999999999999999999999986 55532210 000000000000
Q ss_pred ccccC------------------CCCCC----------------CCcCccCCCCceeeccceEEEEEccchHHHhcCCeE
Q 011989 266 TTKYN------------------GTPQE----------------ASRPFDCGRDGFVIGEGSGVLVLEELEHAKKRGAKI 311 (473)
Q Consensus 266 ~~~~~------------------~~~~~----------------~~~pfd~~~~G~~~geGaaavvL~~~~~A~~~g~~~ 311 (473)
. +++ ..|.. .+.|+. ..+...++||++|+||++++.|++.+.++
T Consensus 153 ~-~yG~t~e~~a~vav~~~~~a~~NP~A~~~~~~t~e~vl~s~~ia~Pl~-~~d~~~~~DGAaAvVL~s~e~A~~l~~~~ 230 (384)
T PRK06158 153 H-QYGTTREQLAEVAVAARQWAQLNPEAFMRDPLTIDDVLAARMVSDPLS-VRDCCLVTDGAGAVVMVRADRARDLPRPP 230 (384)
T ss_pred H-HHCcCHHHHHHHHHHHHHHHhcCchhhhCCCCCHHHHhcCCccCCCCc-hhhcCCccCCeEEEEEecHHHHhhcCCCc
Confidence 0 000 01110 122332 23455689999999999999999877665
Q ss_pred EEEEEEEEEecCCCCCC-CCCCChHHHHHHHHHHHHHcCCCCCCccEEEEcCCCCCCCCHHHHHHHHHHhhccc------
Q 011989 312 YAEVRGYGMSGDAHHIT-QPHIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHA------ 384 (473)
Q Consensus 312 ~a~i~g~~~~~d~~~~~-~~~~~~~~~~~a~~~al~~agl~~~dId~v~~hgtgt~~~D~~E~~a~~~~~~~~~------ 384 (473)
++|.|++...+..... .++........++++||+++||+|+|||++|+| +++++..+...+.
T Consensus 231 -v~i~g~~~~~~~~~~~~~~~~~~~~~~~aa~~A~~~AGi~p~DId~~Ely----------D~Fs~~~l~~~E~lG~~~~ 299 (384)
T PRK06158 231 -VYVLGAAAATWHRQISSMPDLTVTAAAESGPRAFAMAGLTPADIDVVELY----------DAFTINTILFLEDLGFCAK 299 (384)
T ss_pred -EEEEEEEEecCCcccccccchhhhHHHHHHHHHHHHcCCCHHHCcEEEec----------CCchHHHHHHHHHcCCCCC
Confidence 6899988877654432 333344556789999999999999999999999 5555554443222
Q ss_pred -------------CCCCceeeccccc--hhhhHHhHHHHHHHHHHHHHHhCccCCCCCCCCCCCCCCCCCCccccCCCCC
Q 011989 385 -------------TSGSLAFSSTKGA--IGHLLGAAGAVEAIFAVLAIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMP 449 (473)
Q Consensus 385 -------------~~~~~~v~s~k~~--~Gh~~~AsG~~~li~~~~~l~~~~ipp~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (473)
.++++|+|...+. .||+ |++|+.+++++++||+... ...|-.+
T Consensus 300 Ge~~~~~~~G~~~~~G~~PvN~sGG~ls~Ghp-gatG~~~~~E~~~QLrg~a---------------------g~rQv~~ 357 (384)
T PRK06158 300 GEGGAFVEGGRIAPGGRLPVNTNGGGLSCVHP-GMYGLFLLIEAVRQLRGEA---------------------GERQVAG 357 (384)
T ss_pred CcHHHHHHCCCCccCCCccccCCChhhcCCCC-chhhHHHHHHHHHHHcCCC---------------------CCCcCCC
Confidence 2357899999984 5999 9999999999999999643 2233345
Q ss_pred CcEEEEeccc-cccceeeEEEee
Q 011989 450 ISAALSNSFG-FGGTNASLLFTK 471 (473)
Q Consensus 450 ~~~~l~~s~g-~gG~~~~~vl~~ 471 (473)
.+.+|+++.| .+..++.+||++
T Consensus 358 a~~gl~~~~Gg~~~~~~~~vl~~ 380 (384)
T PRK06158 358 AEVALAHGNGGVLSSQATAILGT 380 (384)
T ss_pred CCEEEEECCCCcccceEEEEEec
Confidence 6789998887 444555667764
|
|
| >PRK06157 acetyl-CoA acetyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.6e-24 Score=216.15 Aligned_cols=279 Identities=19% Similarity=0.194 Sum_probs=188.8
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCceeEEEecCCCChhhHHHHHHHHHHhccccCCCcchhhhhhhHHHHHHHHhcC
Q 011989 129 FIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYG 208 (473)
Q Consensus 129 ~~~la~~aa~~Al~dAgl~~~~~~~~~~~gvivg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lg 208 (473)
...|+.+++++||+||||++++++ ++++|+...... ... ....++..+|
T Consensus 27 ~~~L~~ea~~~AL~dagl~~~dID-----~v~vg~~~~~~~----------------------~~~----~~~~~a~~lG 75 (398)
T PRK06157 27 AEDLMVEAFLEALADAGIEPKDID-----AAWFGTHYDEIG----------------------SGK----SGTPLSRALR 75 (398)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCC-----EEEEEecccccc----------------------ccc----hhHHHHHHcC
Confidence 368899999999999999998888 898886431100 000 1124677899
Q ss_pred CCC-CeeeecCCcchHHHHHHHHHHHHHcCCCCEEEEeecCCCcChHH-----------HH----------HHhh-hhcc
Q 011989 209 FQG-PNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALS-----------MA----------GFCK-SRAL 265 (473)
Q Consensus 209 l~G-p~~~v~~acasg~~Al~~A~~~I~~G~~d~vlv~g~d~~~~~~~-----------~~----------~~~~-~~~~ 265 (473)
+.+ |.++|+.+|+|++.||.+|+.+|++|++|++||+|+|.+..... +. .+.. ...+
T Consensus 76 l~~~~~~~v~~~c~sg~~ai~~A~~~I~sG~~d~vlv~G~e~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~a~~~ 155 (398)
T PRK06157 76 LPNIPVTRVENFCATGSEAFRGAVYAVASGAYDIALALGVEKLKDTGYGGLPVANPGTLADMTMPNVTAPGNFAQLASAY 155 (398)
T ss_pred CCCCCEEEEecccHHHHHHHHHHHHHHHCCCCCEEEEEEEeecccCccccccccccccchhcccccCchHHHHHHHHHHH
Confidence 976 88899999999999999999999999999999999997543110 00 0000 0000
Q ss_pred ccccCC----------------------CCCCC------------CcCc-c--CCCCceeeccceEEEEEccchHHHhcC
Q 011989 266 TTKYNG----------------------TPQEA------------SRPF-D--CGRDGFVIGEGSGVLVLEELEHAKKRG 308 (473)
Q Consensus 266 ~~~~~~----------------------~~~~~------------~~pf-d--~~~~G~~~geGaaavvL~~~~~A~~~g 308 (473)
..+++. .|+.. .+|. + ..-+...++|||+|+||.+++.|++.+
T Consensus 156 ~~~yG~t~e~~~~~~a~vav~~~~~A~~np~A~~r~~~t~e~v~~s~~v~~Pl~~~d~~~~~DGAaA~vl~s~~~A~~l~ 235 (398)
T PRK06157 156 AAKYGVSREDLKRAMAHVSVKSHANGARNPKAHLRKAVTEEQVLKAPMIAGPLGLFDCCGVSDGAAAAIVTTPEIARALG 235 (398)
T ss_pred HHHhCCCHHHHcccccHHHHHHHHHHhcCChhhcCCCCCHHHHhcCCcccCCCchhccCCCCCccEEEEEecHHHHHhhC
Confidence 000000 11100 1111 0 011333379999999999999999988
Q ss_pred CeEEEEEEEEEEecCCCCC-----CCCCCChHHHHHHHHHHHHHcCCC--CCCccEEEEcCCCCCCCCHHHHHHHHHHhh
Q 011989 309 AKIYAEVRGYGMSGDAHHI-----TQPHIDGKGAILAMTRALKQSGLQ--SHQVDYVNAHATSTPLGDTVEATAIRTVFS 381 (473)
Q Consensus 309 ~~~~a~i~g~~~~~d~~~~-----~~~~~~~~~~~~a~~~al~~agl~--~~dId~v~~hgtgt~~~D~~E~~a~~~~~~ 381 (473)
..+.++|.|++...+.... ..+.. ......+++++|+++||+ ++|||++|+| |.+++..+..
T Consensus 236 ~~~~v~I~g~~~~~~~~~~~~~~~~~~~~-~~~~~~aa~~a~~~AGl~~~~~Did~~Ei~----------D~Fs~~~l~~ 304 (398)
T PRK06157 236 KKDPVYVKALQLAVSNGWELQYNGWDGSY-FPTTRIAARKAYREAGITDPREELSMAEVH----------DCFSITELVT 304 (398)
T ss_pred CCCCeEEEEEEEecccccccccccccccc-cHHHHHHHHHHHHHcCCCCchhcCCEEEEe----------cCChHHHHHH
Confidence 6455899999887553211 11111 123457899999999998 7999999999 6666666554
Q ss_pred cccC-------------------CCCceeecccc--chhhhHHhHHHHHHHHHHHHHHhCccCCCCCCCCCCCCCCCCCC
Q 011989 382 DHAT-------------------SGSLAFSSTKG--AIGHLLGAAGAVEAIFAVLAIHHGVAPLTLNLAKPDPIFNDNFM 440 (473)
Q Consensus 382 ~~~~-------------------~~~~~v~s~k~--~~Gh~~~AsG~~~li~~~~~l~~~~ipp~~~~~~~~~~~~~~~~ 440 (473)
.+.+ ++++|+|...+ .+||+.+|+|+..++++++||+...
T Consensus 305 ~e~lGl~~~Ge~~~~~~~g~~~~~G~~pvN~~GG~la~Ghp~gatG~~~~~e~~~QLrg~a------------------- 365 (398)
T PRK06157 305 MEDLGLSERGQAWRDVLDGFFDADGGLPCQIDGGLKCFGHPIGASGLRMLYEMYLQLLGRA------------------- 365 (398)
T ss_pred HHHcCCCCCCchHHHHHCCCccCCCCeeecCCCCcccCCCcccHhHHHHHHHHHHHhcccc-------------------
Confidence 3322 35679999998 5599999999999999999998753
Q ss_pred ccccCCCCCCcEEEEecccc---ccceeeEEEe
Q 011989 441 PLTASKDMPISAALSNSFGF---GGTNASLLFT 470 (473)
Q Consensus 441 ~~~~~~~~~~~~~l~~s~g~---gG~~~~~vl~ 470 (473)
...|..+.+.+++++.|. |..++..||.
T Consensus 366 --g~rQv~~a~~~l~~~~gg~~~~~~~~~~~~~ 396 (398)
T PRK06157 366 --GERQLKNPRLALTHNLGGAPGQNVCSVSIVG 396 (398)
T ss_pred --cCccCCCccEEEEeccCCcCCCCEEEEEEEe
Confidence 223444578999988773 3333444444
|
|
| >PRK06366 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.8e-25 Score=220.73 Aligned_cols=270 Identities=21% Similarity=0.286 Sum_probs=198.3
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCceeEEEecCCCChhhHHHHHHHHHHhccccCCCcchhhhhhhHHHHHHHHhcC
Q 011989 129 FIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYG 208 (473)
Q Consensus 129 ~~~la~~aa~~Al~dAgl~~~~~~~~~~~gvivg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lg 208 (473)
..+|+.+|+++||+|+|+++++++ +|++|+..... ....++..++..+|
T Consensus 26 ~~~L~~~a~~~al~dagi~~~dID-----~vi~g~~~~~~--------------------------~~~~~a~~~~~~~G 74 (388)
T PRK06366 26 APQLGGAAIKAVIDDAKLDPALVQ-----EVIMGNVIQAG--------------------------VGQNPAGQAAYHAG 74 (388)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCC-----EEEEEecCCCC--------------------------ccCcHHHHHHHHCC
Confidence 467999999999999999999998 89998643110 00112456788899
Q ss_pred CCC--CeeeecCCcchHHHHHHHHHHHHHcCCCCEEEEeecCCCcChHH------------H-------HH-Hhhh----
Q 011989 209 FQG--PNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALS------------M-------AG-FCKS---- 262 (473)
Q Consensus 209 l~G--p~~~v~~acasg~~Al~~A~~~I~~G~~d~vlv~g~d~~~~~~~------------~-------~~-~~~~---- 262 (473)
+.. |.++++.+|+|++.|+..|+++|++|++|++||+|+|+++.... . .. +...
T Consensus 75 l~~~~p~~~v~~~caSg~~av~~Aa~~I~sG~~d~vla~G~e~ms~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 154 (388)
T PRK06366 75 LPFGVTKYTVNVVCASGMLAVESAAREIMLGERDLVIAGGMENMSNAPFLLPSDLRWGPKHLLHKNYKIDDAMLVDGLID 154 (388)
T ss_pred CCCCCcceeeechhhHHHHHHHHHHHHHhcCCCCEEEEEeeEccccCcccccccccccccccccccchhhhhhcccCccc
Confidence 964 99999999999999999999999999999999999998652110 0 00 0000
Q ss_pred -------hcccc----ccCC------------------CCCC-----CC------------cCcc----------CCCCc
Q 011989 263 -------RALTT----KYNG------------------TPQE-----AS------------RPFD----------CGRDG 286 (473)
Q Consensus 263 -------~~~~~----~~~~------------------~~~~-----~~------------~pfd----------~~~~G 286 (473)
...++ +|+- .|.. .. +|+. ...+|
T Consensus 155 ~~~~~~mal~A~~~~~~yGitrE~~a~vAv~s~~~A~~np~ag~~~~ei~p~~~~~~d~~~r~~t~e~~~~s~~v~~p~g 234 (388)
T PRK06366 155 AFYFEHMGVSAERTARKYGITREMADEYSVQSYERAIRATESGEFRNEIVPFNDLDRDEGIRKTTMEDLAKLPPAFDKNG 234 (388)
T ss_pred cccCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhhHhcCCcccccccccccccccCcccCCHHHHhhCCCccCCCC
Confidence 00000 0100 0110 00 1111 00112
Q ss_pred -------eeeccceEEEEEccchHHHhcCCeEEEEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEEE
Q 011989 287 -------FVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYVN 359 (473)
Q Consensus 287 -------~~~geGaaavvL~~~~~A~~~g~~~~a~i~g~~~~~d~~~~~~~~~~~~~~~~a~~~al~~agl~~~dId~v~ 359 (473)
..++|||+|+||.+++.|++.+.++.++|.|++..... |.........+++++|+++||+++|||++|
T Consensus 235 ~lt~~d~s~~sDGAaAvvl~See~A~~l~~~pv~~I~g~~~~~~~-----~~~~~~~~~~A~~~al~~Agl~~~DiDv~E 309 (388)
T PRK06366 235 ILTAGNSAQLSDGGSALVMASEKAINEYGLKPIARITGYESASLD-----PLDFVEAPIPATRKLLEKQNKSIDYYDLVE 309 (388)
T ss_pred CEehhhcCCcccceeEEEEecHHHHHHcCCCcCEEEEEEEEEecC-----HHHhcccHHHHHHHHHHHcCCCHHHcceee
Confidence 22699999999999999999988888899999887542 111122336899999999999999999999
Q ss_pred EcCCCCCCCCHHHHHHHHHHhhcccCC--CCceeecccc--chhhhHHhHHHHHHHHHHHHHHhCccCCCCCCCCCCCCC
Q 011989 360 AHATSTPLGDTVEATAIRTVFSDHATS--GSLAFSSTKG--AIGHLLGAAGAVEAIFAVLAIHHGVAPLTLNLAKPDPIF 435 (473)
Q Consensus 360 ~hgtgt~~~D~~E~~a~~~~~~~~~~~--~~~~v~s~k~--~~Gh~~~AsG~~~li~~~~~l~~~~ipp~~~~~~~~~~~ 435 (473)
+| |++++..+...+.++ +. +||...+ .+|||.||+|+..++.++.||+..
T Consensus 310 i~----------daFa~~~l~~le~lgl~g~-~vN~~GG~la~GHP~GatG~~~~~~l~~qL~~~--------------- 363 (388)
T PRK06366 310 HN----------EAFSIASIIVRDQLKIDNE-RFNVNGGAVAIGHPIGNSGSRIIVTLINALKTR--------------- 363 (388)
T ss_pred cc----------chhHHHHHHHHHHhCCCCC-ccCCCCchhhhCCCcCCCHHHHHHHHHHHHHhc---------------
Confidence 99 999999998776643 45 8888888 459999999999999999999841
Q ss_pred CCCCCccccCCCCCCcEEEEeccccccceeeEEEeecC
Q 011989 436 NDNFMPLTASKDMPISAALSNSFGFGGTNASLLFTKCQ 473 (473)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~l~~s~g~gG~~~~~vl~~~~ 473 (473)
+.++.++....-||.-.++|||+.|
T Consensus 364 -------------~~~~g~~~~c~~gg~g~a~~~e~~~ 388 (388)
T PRK06366 364 -------------HMKTGLATLCHGGGGAHTLTLEMVE 388 (388)
T ss_pred -------------CCCeEEEEEecccChhhEEEEEecC
Confidence 2467888888899999999999865
|
|
| >PRK07850 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.4e-24 Score=215.01 Aligned_cols=270 Identities=17% Similarity=0.186 Sum_probs=194.7
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCCceeEEEecCCCChhhHHHHHHHHHHhccccCCCcchhhhhhhHHHHHHHHhcCC
Q 011989 130 IAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYGF 209 (473)
Q Consensus 130 ~~la~~aa~~Al~dAgl~~~~~~~~~~~gvivg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lgl 209 (473)
..|+.+++++||+|+|+++.+++ .|++|+..... . -...++..++...|+
T Consensus 27 ~eL~~~a~~~aL~~agi~~~~Id-----~v~~G~~~~~~------------------------~-q~~~~ar~~~l~~Gl 76 (387)
T PRK07850 27 AELLGAVQRAVLDRAGIDPGDVE-----QVIGGCVTQAG------------------------E-QSNNITRTAWLHAGL 76 (387)
T ss_pred HHHHHHHHHHHHHHcCCCHHHCC-----EEEEEeccccc------------------------c-ccchHHHHHHHhCCC
Confidence 67899999999999999988887 88998743110 0 001233455666788
Q ss_pred C-C-CeeeecCCcchHHHHHHHHHHHHHcCCCCEEEEeecCCCcChHH-HH---H----------H------hhhhcccc
Q 011989 210 Q-G-PNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALS-MA---G----------F------CKSRALTT 267 (473)
Q Consensus 210 ~-G-p~~~v~~acasg~~Al~~A~~~I~~G~~d~vlv~g~d~~~~~~~-~~---~----------~------~~~~~~~~ 267 (473)
. + |+++|+++|+||+.|+..|++.|++|++|++||+|+|+++.... .. . + .....+.+
T Consensus 77 ~~~~p~~tV~~~CaSG~~A~~~A~~~I~sG~~dvvla~G~E~mS~~p~~~~~~~~~~~~~~~~~~~~~~~m~~~ae~~~~ 156 (387)
T PRK07850 77 PYHVGATTIDCQCGSAQQANHLVAGLIAAGAIDVGIACGVEAMSRVPLGANAGPGRGLPRPDSWDIDMPNQFEAAERIAK 156 (387)
T ss_pred CCCCceEEEecccccHHHHHHHHHHHHHCCCCCEEEEEeEecCCCCcccccccccccCccccccccCcchHHHHHHHHHH
Confidence 6 3 89999999999999999999999999999999999998765320 00 0 0 00000000
Q ss_pred ccCC-----------------------------------------CCCCC---------------------CcCccC---
Q 011989 268 KYNG-----------------------------------------TPQEA---------------------SRPFDC--- 282 (473)
Q Consensus 268 ~~~~-----------------------------------------~~~~~---------------------~~pfd~--- 282 (473)
+++- .|... ...|..
T Consensus 157 ~ygisre~~d~~a~~sh~~a~~A~~~g~f~~ei~pv~~~~~~~~~np~~~~~~~~~D~~~r~~t~e~l~~l~p~~~~~~~ 236 (387)
T PRK07850 157 RRGITREDVDAFGLRSQRRAAQAWAEGRFDREISPVQAPVLDEEGQPTGETRLVTRDQGLRDTTMEGLAGLKPVLEGGIH 236 (387)
T ss_pred HhCCCHHHHHHHHHHHHHHHHHHHHcCCCcceeeeEeecccccccccCCCceEeecCCCcccCCHHHhccCCCCCCCCCc
Confidence 0100 00000 112211
Q ss_pred C-CCceeeccceEEEEEccchHHHhcCCeEEEEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEEEEc
Q 011989 283 G-RDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYVNAH 361 (473)
Q Consensus 283 ~-~~G~~~geGaaavvL~~~~~A~~~g~~~~a~i~g~~~~~d~~~~~~~~~~~~~~~~a~~~al~~agl~~~dId~v~~h 361 (473)
. .+-..++|||+++||.+++.|++++.++.++|.|++.... .|.....+...+++++|+++|++++|||++|+|
T Consensus 237 t~~~~~~~sDGAaa~vl~see~A~~l~~~p~~~i~g~~~~~~-----~~~~~~~~~~~a~~~al~~agl~~~did~~ei~ 311 (387)
T PRK07850 237 TAGTSSQISDGAAAVLWMDEDRARALGLRPRARIVAQALVGA-----EPYYHLDGPVQATAKVLEKAGMKIGDIDLVEIN 311 (387)
T ss_pred cchhcCCcCCceEEEEEecHHHHHHcCCCCcEEEEEEEEecc-----CchhhcchHHHHHHHHHHHcCCCHHHcCeeeec
Confidence 0 1333478999999999999999999888899999987542 222334456889999999999999999999999
Q ss_pred CCCCCCCCHHHHHHHHHHhhcccCCC-Cceeecccc--chhhhHHhHHHHHHHHHHHHHHhCccCCCCCCCCCCCCCCCC
Q 011989 362 ATSTPLGDTVEATAIRTVFSDHATSG-SLAFSSTKG--AIGHLLGAAGAVEAIFAVLAIHHGVAPLTLNLAKPDPIFNDN 438 (473)
Q Consensus 362 gtgt~~~D~~E~~a~~~~~~~~~~~~-~~~v~s~k~--~~Gh~~~AsG~~~li~~~~~l~~~~ipp~~~~~~~~~~~~~~ 438 (473)
|++++..+...+.++. .-|+|...+ .+|||.+|+|+..++++++||+.+
T Consensus 312 ----------d~F~~~~l~~~e~lg~~~~pvN~~GG~la~Ghp~gatG~~~v~e~~~qL~~~------------------ 363 (387)
T PRK07850 312 ----------EAFASVVLSWAQVHEPDMDKVNVNGGAIALGHPVGSTGARLITTALHELERT------------------ 363 (387)
T ss_pred ----------ccchHHHHHHHHHcCCCCCCcCCCCchhhcCCCcchhHHHHHHHHHHHHHhc------------------
Confidence 8888887765444331 126666666 679999999999999999999741
Q ss_pred CCccccCCCCCCcEEEEeccccccceeeEEEeec
Q 011989 439 FMPLTASKDMPISAALSNSFGFGGTNASLLFTKC 472 (473)
Q Consensus 439 ~~~~~~~~~~~~~~~l~~s~g~gG~~~~~vl~~~ 472 (473)
..++.++...+-||...++|||++
T Consensus 364 ----------~~~~g~~~~c~~gg~g~a~~~e~~ 387 (387)
T PRK07850 364 ----------DKSTALITMCAGGALSTGTIIERI 387 (387)
T ss_pred ----------CCCeEEEEEccccCceeEEEEEeC
Confidence 245788888889999999999874
|
|
| >PRK06445 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.8e-24 Score=218.35 Aligned_cols=272 Identities=20% Similarity=0.272 Sum_probs=192.3
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCceeEEEecCCCChhhHHHHHHHHHHhccccCCCcchhhhhhhHHHHHHHHhcC
Q 011989 129 FIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYG 208 (473)
Q Consensus 129 ~~~la~~aa~~Al~dAgl~~~~~~~~~~~gvivg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lg 208 (473)
...|+.+|+++||+|+|+++++++ .|++|+....... + .... ....+...++
T Consensus 32 ~~~L~~~a~~~AL~~agl~~~dID-----~vi~g~~~~~~~~---------------------~-~~~~-~~~~l~a~~~ 83 (394)
T PRK06445 32 PEELAAMLINRLIEKTGIKPEEID-----DIITGCALQVGEN---------------------W-LYGG-RHPIFLARLP 83 (394)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCC-----eeEEEeecCCCcc---------------------c-ccHH-HHHHHHcCCC
Confidence 368999999999999999999888 8899875432100 0 0000 1112333344
Q ss_pred CCCCeeeecCCcchHHHHHHHHHHHHHcCCCCEEEEeecCCCcChHH-----------HH-H-----Hhh-----hhc--
Q 011989 209 FQGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALS-----------MA-G-----FCK-----SRA-- 264 (473)
Q Consensus 209 l~Gp~~~v~~acasg~~Al~~A~~~I~~G~~d~vlv~g~d~~~~~~~-----------~~-~-----~~~-----~~~-- 264 (473)
.+-|+++|+.+|+|++.|+.+|+++|++|.+|++||+|+|.++.... .. . +.. ...
T Consensus 84 ~~~p~~~V~~~CaSg~~ai~~A~~~I~sG~~d~vLv~G~e~ms~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~a 163 (394)
T PRK06445 84 YNIPAMAVDRQCASSLTTVSIGAMEIATGMADIVIAGGVEHMTRTPMGDNPHIEPNPKLLTDPKYIEYDLTTGYVMGLTA 163 (394)
T ss_pred CCCcchhhhhhhHHHHHHHHHHHHHHHcCCCCEEEEeeecccccCccccCccccCChhhccccccCcccccCCCCHHHHH
Confidence 44589999999999999999999999999999999999996552110 00 0 000 000
Q ss_pred --cccccCC-------------------------------------------CCCCCCc------------C-ccC----
Q 011989 265 --LTTKYNG-------------------------------------------TPQEASR------------P-FDC---- 282 (473)
Q Consensus 265 --~~~~~~~-------------------------------------------~~~~~~~------------p-fd~---- 282 (473)
+.++|+- .|+...+ | |+.
T Consensus 164 ~~~~~~ygitre~~a~va~~sh~~A~~a~~~g~~~~ei~p~~~~~~~~~~~~npda~~r~~~t~e~~~~~~~v~~~~g~l 243 (394)
T PRK06445 164 EKLAEEAGIKREEMDRWSLRSHQLAAKAIQEGYFKDEILPIEVEVEGKKKVVDVDQSVRPDTSLEKLAKLPPAFKPDGVI 243 (394)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHcCCCcceEeEEEecCCCCceeeCCCCCCCCCCCHHHHhcCCCccCCCCcE
Confidence 0000100 1111111 0 110
Q ss_pred -CCCceeeccceEEEEEccchHHHhcCCeEEEEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEEEEc
Q 011989 283 -GRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYVNAH 361 (473)
Q Consensus 283 -~~~G~~~geGaaavvL~~~~~A~~~g~~~~a~i~g~~~~~d~~~~~~~~~~~~~~~~a~~~al~~agl~~~dId~v~~h 361 (473)
..+-..++|||+++||++++.|++++.+++++|.|++...+ .+.....+...+++++|+++|++++|||++|+|
T Consensus 244 t~~~~~~~~DGAaavvl~s~~~A~~~~~~~~a~i~g~~~~~~-----~~~~~~~~~~~a~~~al~~Agl~~~dId~~e~~ 318 (394)
T PRK06445 244 TAGNSSPLNSGASYVLLMSKKAVKKYGLKPMAKIRSFGFAGV-----PPAIMGKGPVPASKKALEKAGLSVKDIDLWEIN 318 (394)
T ss_pred ecCcCCCCCCceEEEEEecHHHHHHCCCCceEEEEEEEEecc-----CCchhcchHHHHHHHHHHHcCCCHHHcCEEEec
Confidence 01123369999999999999999999999999999998763 233334466889999999999999999999999
Q ss_pred CCCCCCCCHHHHHHHHHHhhcccCC-CCceeecccc--chhhhHHhHHHHHHHHHHHHHHhCccCCCCCCCCCCCCCCCC
Q 011989 362 ATSTPLGDTVEATAIRTVFSDHATS-GSLAFSSTKG--AIGHLLGAAGAVEAIFAVLAIHHGVAPLTLNLAKPDPIFNDN 438 (473)
Q Consensus 362 gtgt~~~D~~E~~a~~~~~~~~~~~-~~~~v~s~k~--~~Gh~~~AsG~~~li~~~~~l~~~~ipp~~~~~~~~~~~~~~ 438 (473)
|++++..+...+.++ .+-+++...+ .+|||.||+|+..+++++++|+.
T Consensus 319 ----------d~f~~~~l~~~e~lg~~~~~vN~~GG~la~Ghp~gatG~~~v~e~~~qL~~------------------- 369 (394)
T PRK06445 319 ----------EAFAVVVLYAIKELGLDPETVNIKGGAIAIGHPLGATGARIVGTLARQLQI------------------- 369 (394)
T ss_pred ----------ccchHHHHHHHHHhCCCccccCCCCCHHHcCCCccchHHHHHHHHHHHHHh-------------------
Confidence 777777776655433 1235666666 56999999999999999999971
Q ss_pred CCccccCCCCCCcEEEEeccccccceeeEEEee
Q 011989 439 FMPLTASKDMPISAALSNSFGFGGTNASLLFTK 471 (473)
Q Consensus 439 ~~~~~~~~~~~~~~~l~~s~g~gG~~~~~vl~~ 471 (473)
.+.+++|++..+-||...++||++
T Consensus 370 ---------~~~~~gl~~~~~~gg~g~a~~~e~ 393 (394)
T PRK06445 370 ---------KGKDYGVATLCVGGGQGGAVVLER 393 (394)
T ss_pred ---------cCCCEEEEEEcccCChhhEEEEEc
Confidence 134689999999999999999986
|
|
| >PF02801 Ketoacyl-synt_C: Beta-ketoacyl synthase, C-terminal domain; InterPro: IPR014031 Beta-ketoacyl-ACP synthase 2 | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.8e-25 Score=187.27 Aligned_cols=118 Identities=39% Similarity=0.646 Sum_probs=99.2
Q ss_pred EEEEEEEEEecCC-CCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEEEEcCCCCCCCCHHHHHHHHHHhhcccCCCCce
Q 011989 312 YAEVRGYGMSGDA-HHITQPHIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLA 390 (473)
Q Consensus 312 ~a~i~g~~~~~d~-~~~~~~~~~~~~~~~a~~~al~~agl~~~dId~v~~hgtgt~~~D~~E~~a~~~~~~~~~~~~~~~ 390 (473)
|++|+|++.++|+ .+...+.+...++.++++++|+++|++|+|||||++||+||+.+|..|..++.++|+......+++
T Consensus 1 ya~i~g~~~~~dg~~~~~~~~p~~~~~~~~i~~al~~agi~~~~I~~i~~hg~Gt~~~D~~E~~ai~~~~~~~~~~~~~~ 80 (119)
T PF02801_consen 1 YAVIRGYGVNSDGARSSSLTAPNGAALARAIRRALADAGISPEDIDYIEAHGTGTPLGDAAEAEAIARVFGDSARQQPVP 80 (119)
T ss_dssp SEEEEEEEEEE-SSSTSSSSSTTHHHHHHHHHHHHHHHTS-GGGEEEEE----SSHHHHHHHHHHHHHHHGGGGGTSTSE
T ss_pred CEEEEEEEEECCCCCCCCCcCcCHHHHHHHHHHHHhhhccccccceeeeeeccccccchhhhhhhhhhhhcccccccccc
Confidence 6899999999998 777777888999999999999999999999999999999999999999999999999764345799
Q ss_pred eeccccchhhhHHhHHHHHHHHHHHHHHhCccCCCCCCC
Q 011989 391 FSSTKGAIGHLLGAAGAVEAIFAVLAIHHGVAPLTLNLA 429 (473)
Q Consensus 391 v~s~k~~~Gh~~~AsG~~~li~~~~~l~~~~ipp~~~~~ 429 (473)
|+++|+++||+++|+|++++++++++|++++|||++|++
T Consensus 81 v~s~K~~~Gh~~~asG~~~l~~~~l~l~~~~ipp~~n~~ 119 (119)
T PF02801_consen 81 VGSVKSNIGHTEAASGLLSLAKALLALEHGTIPPTINFE 119 (119)
T ss_dssp EE-THHHH-B-GGGHHHHHHHHHHHHHHHTEE--BTT-S
T ss_pred eeccccccccccccchHHHHHHHHHHHhcCCCCCCcCCC
Confidence 999999999999999999999999999999999999975
|
3.1.41 from EC (KAS) [] is the enzyme that catalyzes the condensation of malonyl-ACP with the growing fatty acid chain. It is found as a component of a number of enzymatic systems, including fatty acid synthetase (FAS), which catalyzes the formation of long-chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH; the multi-functional 6-methysalicylic acid synthase (MSAS) from Penicillium patulum [], which is involved in the biosynthesis of a polyketide antibiotic; polyketide antibiotic synthase enzyme systems; Emericella nidulans multifunctional protein Wa, which is involved in the biosynthesis of conidial green pigment; Rhizobium nodulation protein nodE, which probably acts as a beta-ketoacyl synthase in the synthesis of the nodulation Nod factor fatty acyl chain; and yeast mitochondrial protein CEM1. The condensation reaction is a two step process, first the acyl component of an activated acyl primer is transferred to a cysteine residue of the enzyme and is then condensed with an activated malonyl donor with the concomitant release of carbon dioxide. This entry represents the C-terminal domain of beta-ketoacyl-ACP synthases. The active site is contained in a cleft betweeen N- and C-terminal domains, with residues from both domains contributing to substrate binding and catalysis [].; PDB: 2UV8_B 3HMJ_A 2VKZ_C 4EWG_A 1TQY_H 1E5M_A 1J3N_B 2VZ8_A 2VZ9_B 3O04_A .... |
| >PLN02644 acetyl-CoA C-acetyltransferase | Back alignment and domain information |
|---|
Probab=99.92 E-value=8.2e-24 Score=213.31 Aligned_cols=271 Identities=24% Similarity=0.307 Sum_probs=190.0
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCceeEEEecCCCChhhHHHHHHHHHHhccccCCCcchhhhhhhHHHHHHHHhcC
Q 011989 129 FIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYG 208 (473)
Q Consensus 129 ~~~la~~aa~~Al~dAgl~~~~~~~~~~~gvivg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lg 208 (473)
...|+.+++++||+|||+++++++ +|++|+..... .+ ...+..++..+|
T Consensus 25 ~~~L~~~a~~~al~dAgl~~~~ID-----~vv~g~~~~~~-----------------------~~---~~~~~~~~~~~G 73 (394)
T PLN02644 25 ATELGSIAIQAALERAGVDPALVQ-----EVFFGNVLSAN-----------------------LG---QAPARQAALGAG 73 (394)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCC-----EEEEEecCcCC-----------------------cC---CcHHHHHHHhcC
Confidence 378999999999999999998888 88888632110 00 012335777888
Q ss_pred CC--CCeeeecCCcchHHHHHHHHHHHHHcCCCCEEEEeecCCCcChHH----------------H-----H--------
Q 011989 209 FQ--GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALS----------------M-----A-------- 257 (473)
Q Consensus 209 l~--Gp~~~v~~acasg~~Al~~A~~~I~~G~~d~vlv~g~d~~~~~~~----------------~-----~-------- 257 (473)
+. -|.++|+.+|+|++.|+.+|+++|++|++|++||+|+|.++.... . .
T Consensus 74 l~~~~p~~~v~~~caSg~~av~~Aa~~I~sG~~d~vlv~G~E~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (394)
T PLN02644 74 LPPSTICTTVNKVCASGMKAVMLAAQSIQLGINDVVVAGGMESMSNAPKYLPEARKGSRLGHDTVVDGMLKDGLWDVYND 153 (394)
T ss_pred CCCCCceEEEeccchHHHHHHHHHHHHHHcCCCCEEEEEeEEecCCCcccccccccccccccchhhhhccccccccccCC
Confidence 86 278889999999999999999999999999999999887642110 0 0
Q ss_pred -HHh-hhhccccccC--------------------CCC---CCC----------CcC---cc--------------C---
Q 011989 258 -GFC-KSRALTTKYN--------------------GTP---QEA----------SRP---FD--------------C--- 282 (473)
Q Consensus 258 -~~~-~~~~~~~~~~--------------------~~~---~~~----------~~p---fd--------------~--- 282 (473)
.+. ....+.++++ ..+ ... ..| ++ .
T Consensus 154 ~~~~~~A~~~~~~yG~tre~la~vav~s~~~a~~a~~~~~~~~ei~~~~v~~~~~~~~~~~~~de~~~~~~~~~l~~l~p 233 (394)
T PLN02644 154 FGMGVCAELCADQYSISREEQDAYAIQSYERAIAAQEAGAFAWEIVPVEVPGGRGRPSVIVDKDEGLGKFDPAKLRKLRP 233 (394)
T ss_pred CcHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhHHcCCCccceeeEEeccCCCCCceEeecCCCcCCCCHHHHhCCCC
Confidence 000 0000000000 000 000 000 10 0
Q ss_pred ----C------CCceeeccceEEEEEccchHHHhcCCeEEEEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHHcCCCC
Q 011989 283 ----G------RDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQS 352 (473)
Q Consensus 283 ----~------~~G~~~geGaaavvL~~~~~A~~~g~~~~a~i~g~~~~~d~~~~~~~~~~~~~~~~a~~~al~~agl~~ 352 (473)
+ .+...++||++++||++++.|++++.+++++|.|++...+.. .........+++++|+++|+++
T Consensus 234 ~f~~~~g~vt~~~~~~~~DGaaavvl~s~~~A~~~~~~~~a~I~g~~~~~~~~-----~~~~~~~~~a~~~al~~Agi~~ 308 (394)
T PLN02644 234 SFKEDGGSVTAGNASSISDGAAALVLVSGEKALELGLQVIAKIRGYADAAQAP-----ELFTTAPALAIPKALKHAGLEA 308 (394)
T ss_pred cccCCCCcEeccccCCCCcceEEEEeccHHHHHHCCCCeEEEEEEEEEcCCCC-----cccchhHHHHHHHHHHHcCCCH
Confidence 0 123346999999999999999999999999999999876532 1122233579999999999999
Q ss_pred CCccEEEEcCCCCCCCCHHHHHHHHHHhhcccCC---CCceeeccccchhhhHHhHHHHHHHHHHHHHHhCccCCCCCCC
Q 011989 353 HQVDYVNAHATSTPLGDTVEATAIRTVFSDHATS---GSLAFSSTKGAIGHLLGAAGAVEAIFAVLAIHHGVAPLTLNLA 429 (473)
Q Consensus 353 ~dId~v~~hgtgt~~~D~~E~~a~~~~~~~~~~~---~~~~v~s~k~~~Gh~~~AsG~~~li~~~~~l~~~~ipp~~~~~ 429 (473)
+|||++|+| |++++..+...+.++ .++.++..+..+||+.||+|+.++++++++|+.+
T Consensus 309 ~Did~~Ei~----------d~f~~~~l~~~e~lg~~~~~vN~~GG~l~~Ghp~gasG~~~~~~~~~~l~~~--------- 369 (394)
T PLN02644 309 SQVDYYEIN----------EAFSVVALANQKLLGLDPEKVNVHGGAVSLGHPIGCSGARILVTLLGVLRSK--------- 369 (394)
T ss_pred HHCCEEEeC----------cHHHHHHHHHHHHhCCCccccCCCCChHhhCCCHHHHHHHHHHHHHHHHHhc---------
Confidence 999999999 777776666544433 2333444444789999999999999999999852
Q ss_pred CCCCCCCCCCCccccCCCCCCcEEEEeccccccceeeEEEeecC
Q 011989 430 KPDPIFNDNFMPLTASKDMPISAALSNSFGFGGTNASLLFTKCQ 473 (473)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~~~~~l~~s~g~gG~~~~~vl~~~~ 473 (473)
+.++.+...++-||...++||++-|
T Consensus 370 -------------------~~~~g~~~~~~~gg~g~a~~~e~~~ 394 (394)
T PLN02644 370 -------------------NGKYGVAGICNGGGGASAIVVELMQ 394 (394)
T ss_pred -------------------CCCeEEEEEeccCCceeEEEEEecC
Confidence 2347787778888999999999864
|
|
| >PRK08235 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.3e-24 Score=215.77 Aligned_cols=269 Identities=21% Similarity=0.235 Sum_probs=190.0
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCceeEEEecCCCChhhHHHHHHHHHHhccccCCCcchhhhhhhHHHHHHHHhcC
Q 011989 129 FIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYG 208 (473)
Q Consensus 129 ~~~la~~aa~~Al~dAgl~~~~~~~~~~~gvivg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lg 208 (473)
...|+.+|+++||+|+|+++++++ .|++|+..... .+ ..++..++..+|
T Consensus 26 ~~eLa~~A~~~aL~~agl~~~dID-----~vi~g~~~~~~-----------------------~~---~~~~~~~~~~~G 74 (393)
T PRK08235 26 ATELGGIAIKEALERANVSAEDVE-----EVIMGTVLQGG-----------------------QG---QIPSRQAARAAG 74 (393)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCC-----EEEEEecccCC-----------------------CC---CCHHHHHHHHcC
Confidence 368999999999999999998888 89999754210 00 122234678889
Q ss_pred CC--CCeeeecCCcchHHHHHHHHHHHHHcCCCCEEEEeecCCCcChHHHH-------------HH-----hh-------
Q 011989 209 FQ--GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMA-------------GF-----CK------- 261 (473)
Q Consensus 209 l~--Gp~~~v~~acasg~~Al~~A~~~I~~G~~d~vlv~g~d~~~~~~~~~-------------~~-----~~------- 261 (473)
+. -|+++|+.+|+|++.||..|+++|++|++|++||+|+|.++...... .+ ..
T Consensus 75 l~~~~p~~~V~~~CaSg~~Al~~A~~~I~sG~~d~vLvvG~E~ms~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (393)
T PRK08235 75 IPWEVQTETVNKVCASGLRAVTLADQIIRAGDASVIVAGGMESMSNAPYILPGARWGYRMGDNEVIDLMVADGLTCAFSG 154 (393)
T ss_pred CCCCcceeehhhhhhHHHHHHHHHHHHHHCCCCCEEEEEeeeccccCcccccccccccccCCchhhhhhcccccccccCC
Confidence 84 38999999999999999999999999999999999999876532100 00 00
Q ss_pred --hhc----cccccCC--------------------------------------------CCCCCCcC------------
Q 011989 262 --SRA----LTTKYNG--------------------------------------------TPQEASRP------------ 279 (473)
Q Consensus 262 --~~~----~~~~~~~--------------------------------------------~~~~~~~p------------ 279 (473)
++. +.+.++- .|+...|+
T Consensus 155 ~~~~~~A~~~~~~ygitre~~d~~avksh~~a~~a~~~g~~~~ei~pv~~~~~~~~~~~~~~da~~r~~~t~e~~~~~~~ 234 (393)
T PRK08235 155 VHMGVYGGEVAKELGISREAQDEWAYRSHQRAVSAHEEGRFEEEIVPVTIPQRKGDPIVVAKDEAPRKDTTIEKLAKLKP 234 (393)
T ss_pred CCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHcCCCCceEeeeEecCCCCCceEeCCCCCCCCCCCHHHHhcCCC
Confidence 000 0000100 01211111
Q ss_pred -ccC-----CCCceeeccceEEEEEccchHHHhcCCeEEEEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHHcCCCCC
Q 011989 280 -FDC-----GRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSH 353 (473)
Q Consensus 280 -fd~-----~~~G~~~geGaaavvL~~~~~A~~~g~~~~a~i~g~~~~~d~~~~~~~~~~~~~~~~a~~~al~~agl~~~ 353 (473)
|+. ..+-..++|||+++||++++.|++++.+++++|.|++...... .........+++++|+++||+++
T Consensus 235 v~~p~g~lt~~~~~~~~DGAaa~vl~s~~~A~~~~~~p~~~i~g~~~~~~~~-----~~~~~~~~~a~~~al~~agl~~~ 309 (393)
T PRK08235 235 VFDKTGTITAGNAPGVNDGAAALVLMSEDRAKQEGRKPLATILAHTAIAVEA-----KDFPRTPGYAINALLEKTGKTVE 309 (393)
T ss_pred cccCCCcEeccccCCCCCceEEEEEecHHHHHHCCCCceEEEEEEEecccCh-----hhhcchHHHHHHHHHHHhCCCHH
Confidence 110 0112226999999999999999999999999999987654311 11122346899999999999999
Q ss_pred CccEEEEcCCCCCCCCHHHHHHHHHHhhcccCC---CCceeeccccchhhhHHhHHHHHHHHHHHHHHhCccCCCCCCCC
Q 011989 354 QVDYVNAHATSTPLGDTVEATAIRTVFSDHATS---GSLAFSSTKGAIGHLLGAAGAVEAIFAVLAIHHGVAPLTLNLAK 430 (473)
Q Consensus 354 dId~v~~hgtgt~~~D~~E~~a~~~~~~~~~~~---~~~~v~s~k~~~Gh~~~AsG~~~li~~~~~l~~~~ipp~~~~~~ 430 (473)
|||++|+| |++++..+...+.++ .++.++..+..+||+.||+|+..++.++++|+.+
T Consensus 310 did~~e~~----------d~f~~~~l~~~e~lg~~~~pvN~~GG~la~Ghp~gasG~~~~~~l~~qL~~~---------- 369 (393)
T PRK08235 310 DIDLFEIN----------EAFAAVALASTEIAGIDPEKVNVNGGAVALGHPIGASGARIIVTLIHELKRR---------- 369 (393)
T ss_pred HCCeehhc----------chhHHHHHHHHHHhCCCcccCCcCCchHHhCCcHHHHHHHHHHHHHHHHHhc----------
Confidence 99999999 888776665544332 2344445555789999999999999999999852
Q ss_pred CCCCCCCCCCccccCCCCCCcEEEEeccccccceeeEEEee
Q 011989 431 PDPIFNDNFMPLTASKDMPISAALSNSFGFGGTNASLLFTK 471 (473)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~~~~~l~~s~g~gG~~~~~vl~~ 471 (473)
..++.+...+.-||.-.++|||+
T Consensus 370 ------------------~~~~g~~~~c~~gG~g~a~~~e~ 392 (393)
T PRK08235 370 ------------------GGGIGIAAICSGGGQGDAVLIEV 392 (393)
T ss_pred ------------------CCCeEEEEEcccccceEEEEEEe
Confidence 12357777778888999999986
|
|
| >PRK06289 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=9.1e-24 Score=214.11 Aligned_cols=283 Identities=17% Similarity=0.170 Sum_probs=186.3
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCceeEEEecCCCChhhHHHHHHHHHHhccccCCCcchhhhhhhHHHHHHHHhcC
Q 011989 129 FIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYG 208 (473)
Q Consensus 129 ~~~la~~aa~~Al~dAgl~~~~~~~~~~~gvivg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lg 208 (473)
...|+.+|+++||+|||+++++++ +|++++..+... .. ...+.... .. ...+
T Consensus 26 ~~eLa~eA~~~AL~dAgl~~~dID-----~vi~g~~~~~~~----------------~~----~~~~~~~~-~~--~~~~ 77 (403)
T PRK06289 26 FADLTREVVDGTLAAAGVDADDIE-----VVHVGNFFGELF----------------AG----QGHLGAMP-AT--VHPA 77 (403)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCC-----EEEEEecccccc----------------cc----ccccchHH-HH--Hhhc
Confidence 478999999999999999999998 888887533210 00 00000111 11 1223
Q ss_pred CCC-CeeeecCCcchHHHHHHHHHHHHHcCCCCEEEEeecCCCcChHHHH---HH------hh------------hhccc
Q 011989 209 FQG-PNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMA---GF------CK------------SRALT 266 (473)
Q Consensus 209 l~G-p~~~v~~acasg~~Al~~A~~~I~~G~~d~vlv~g~d~~~~~~~~~---~~------~~------------~~~~~ 266 (473)
+.| |+++++++|+|++.||.+|+.+|++|++|+|||+|+|.+....... .+ .. ....+
T Consensus 78 ~~g~~~~~v~~~Casg~~al~~Aa~~I~sG~~~~VLvvg~e~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~a 157 (403)
T PRK06289 78 LWGVPASRHEAACASGSVATLAAMADLRAGRYDVALVVGVELMKTVPGDVAAEHLGAAAWTGHEGQDARFPWPSMFARVA 157 (403)
T ss_pred CCCCceeecccccHHHHHHHHHHHHHHHcCCCCEEEEEEEEecCCCCchhhHHhhhcccccccccccCCCccHHHHHHHH
Confidence 334 8999999999999999999999999999999999999865421100 00 00 00000
Q ss_pred cc----cCC------------------CCCCCCc------Ccc--------------CCCCceeeccceEEEEEccchHH
Q 011989 267 TK----YNG------------------TPQEASR------PFD--------------CGRDGFVIGEGSGVLVLEELEHA 304 (473)
Q Consensus 267 ~~----~~~------------------~~~~~~~------pfd--------------~~~~G~~~geGaaavvL~~~~~A 304 (473)
++ |+- .|....+ |.. ...+-..++|||+|+||.+++.|
T Consensus 158 ~~y~~~yG~t~e~la~va~~~~~~A~~NP~A~~~~~~~~~~~~~~d~~~s~~i~~Pl~~~d~~~~~DGAaA~vl~s~e~a 237 (403)
T PRK06289 158 DEYDRRYGLDEEHLRAIAEINFANARRNPNAQTRGWAFPDEATNDDDATNPVVEGRLRRQDCSQVTDGGAGVVLASDAYL 237 (403)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHccCcHhhcCccccccccchhhhhcCCcccCCCchhhcCCCCCceeEEEEEcHHHH
Confidence 00 100 1111111 110 00112226899999999999999
Q ss_pred HhcCC-eEEEEEEEEEEecCCCCCCC------CCC-ChHHHHHHHHHHHHHcCCCCCCccEEEEcCCCCCCCCHHHHHHH
Q 011989 305 KKRGA-KIYAEVRGYGMSGDAHHITQ------PHI-DGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAI 376 (473)
Q Consensus 305 ~~~g~-~~~a~i~g~~~~~d~~~~~~------~~~-~~~~~~~a~~~al~~agl~~~dId~v~~hgtgt~~~D~~E~~a~ 376 (473)
++.+. ++.++|+|++..++...... .++ .......+.+++|+++||+++|||++|+| |++++
T Consensus 238 ~~l~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~a~~~Agi~~~Didv~el~----------D~fa~ 307 (403)
T PRK06289 238 RDYADARPIPRIKGWGHRTAPLGLEQKLDRSAGDPYVLPHVRQAVLDAYRRAGVGLDDLDGFEVH----------DCFTP 307 (403)
T ss_pred HHhccCCCCEEEEEEEEeccccccccccccccccccccHHHHHHHHHHHHHcCCCHHHCeEEeee----------ccchH
Confidence 88875 56689999998765432211 111 22335679999999999999999999999 66666
Q ss_pred HHHhhcccC-------------------CCCceeeccccc--hhhhHHhHHHHHHHHHHHHHHhCccCCCCCCCCCCCCC
Q 011989 377 RTVFSDHAT-------------------SGSLAFSSTKGA--IGHLLGAAGAVEAIFAVLAIHHGVAPLTLNLAKPDPIF 435 (473)
Q Consensus 377 ~~~~~~~~~-------------------~~~~~v~s~k~~--~Gh~~~AsG~~~li~~~~~l~~~~ipp~~~~~~~~~~~ 435 (473)
..+...+.+ ++++|+|...+. .|||.+|+|+..++++++||+...
T Consensus 308 ~~l~~le~lGl~~~Ge~~~~v~~G~~~~~G~lpvN~~GG~la~Ghp~gatG~~~~~e~~~QLrg~a-------------- 373 (403)
T PRK06289 308 SEYLAIDHIGLTGPGESWKAIENGEIAIGGRLPINPSGGLIGGGHPVGASGVRMLLDAAKQVTGTA-------------- 373 (403)
T ss_pred HHHHHHHHcCCCCCCcHHHHHhcCCcccCCCeeEcCCCCccccCCCccchHHHHHHHHHHHHhccc--------------
Confidence 665533322 367899999994 599999999999999999999642
Q ss_pred CCCCCccccCCCCCCcEEEEeccc-cccceeeEEEe
Q 011989 436 NDNFMPLTASKDMPISAALSNSFG-FGGTNASLLFT 470 (473)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~l~~s~g-~gG~~~~~vl~ 470 (473)
...|....+.+++.+.| .+|++.++||+
T Consensus 374 -------g~~Qv~~~~~~l~~~~gg~~~~~~~~i~~ 402 (403)
T PRK06289 374 -------GDYQVEGAKTFGTLNIGGSTTTTVSFVVG 402 (403)
T ss_pred -------cCccCCchheEEEEecCcccceEEEEEEe
Confidence 12233345567777777 44556666664
|
|
| >PRK08947 fadA 3-ketoacyl-CoA thiolase; Reviewed | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.3e-23 Score=211.04 Aligned_cols=269 Identities=21% Similarity=0.266 Sum_probs=193.1
Q ss_pred HHHHHHHHHHHHH-HcCCCCCCCCCCCceeEEEecCCCChhhHHHHHHHHHHhccccCCCcchhhhhhhHHHHHHHHhcC
Q 011989 130 IAYALCAADEALH-DAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYG 208 (473)
Q Consensus 130 ~~la~~aa~~Al~-dAgl~~~~~~~~~~~gvivg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lg 208 (473)
..|+.+++++||+ |+|+++++++ .|++|+..... .. ...++..++...|
T Consensus 28 ~~L~~~~~~~al~~~agl~~~~Id-----~vi~g~~~~~~-----------------------~~--g~~~ar~~~~~~G 77 (387)
T PRK08947 28 EDLSAHLMRSLLARNPALDPAEID-----DIIWGCVQQTL-----------------------EQ--GFNIARNAALLAG 77 (387)
T ss_pred HHHHHHHHHHHHHhccCcChHHhC-----eEEEEeccccc-----------------------cc--cccHHHHHHHHcC
Confidence 6788999999999 5899988887 89998643110 00 0122335677788
Q ss_pred CCC--CeeeecCCcchHHHHHHHHHHHHHcCCCCEEEEeecCCCcChHH---------H----------HHHhhhhcccc
Q 011989 209 FQG--PNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALS---------M----------AGFCKSRALTT 267 (473)
Q Consensus 209 l~G--p~~~v~~acasg~~Al~~A~~~I~~G~~d~vlv~g~d~~~~~~~---------~----------~~~~~~~~~~~ 267 (473)
+.. |+++|+.+|+||+.|+..|+++|++|++|++||+|+|+++.... + ..... ..+.+
T Consensus 78 l~~~~p~~~V~~~caSG~~Ai~~A~~~I~sG~~d~vlv~G~E~ms~~~~~~~~~~~~~~~~~~~~~~~~~~~~a-~~~~~ 156 (387)
T PRK08947 78 IPHSVPAVTVNRLCGSSMQALHDAARAIMTGDGDVFLIGGVEHMGHVPMNHGVDFHPGLSKNVAKAAGMMGLTA-EMLGK 156 (387)
T ss_pred CCCCCcceeeechhHHHHHHHHHHHHHHHCCCCCEEEEccccccccCccccccCcchhhhhhccccchHHHHHH-HHHHH
Confidence 863 77999999999999999999999999999999999998764211 0 00000 00000
Q ss_pred cc-------------------C--------C-----------------CCCCCCc------------C-ccC------CC
Q 011989 268 KY-------------------N--------G-----------------TPQEASR------------P-FDC------GR 284 (473)
Q Consensus 268 ~~-------------------~--------~-----------------~~~~~~~------------p-fd~------~~ 284 (473)
+| . . .++...| | |+. ..
T Consensus 157 ~ygisre~~~~~avksh~~a~~a~~~g~f~~ei~pv~~~~~~~~~~~~~~da~~r~~~t~e~~~~~~~v~~p~~g~lt~~ 236 (387)
T PRK08947 157 MHGISREQQDAFAARSHQRAWAATQEGRFKNEIIPTEGHDADGVLKLFDYDEVIRPETTVEALAALRPAFDPVNGTVTAG 236 (387)
T ss_pred HhCCCHHHHHHHHHHHHHHHHHHHHcCCCcceEeeeeecCCCCCceeecCCCCCcCCCCHHHHhcCCceeeCCCCcEEcc
Confidence 00 0 0 0111111 1 111 12
Q ss_pred CceeeccceEEEEEccchHHHhcCCeEEEEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEEEEcCCC
Q 011989 285 DGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYVNAHATS 364 (473)
Q Consensus 285 ~G~~~geGaaavvL~~~~~A~~~g~~~~a~i~g~~~~~d~~~~~~~~~~~~~~~~a~~~al~~agl~~~dId~v~~hgtg 364 (473)
+-..++||++++||++++.|++++.+++++|.|++.+....+ ....+...+++++|+++|++|+|||++|+|
T Consensus 237 ~~~~~sDGAaAvvl~s~~~A~~~g~~p~~~I~g~~~~~~~~~-----~~~~~~~~a~~~al~~Agl~~~DId~~El~--- 308 (387)
T PRK08947 237 TSSALSDGASAMLVMSESRAKELGLKPRARIRSMAVAGCDPS-----IMGYGPVPATQKALKRAGLSISDIDVFELN--- 308 (387)
T ss_pred ccCCcCCceEEEEEccHHHHHHCCCCccEEEEEEEEcCcCcc-----cccccHHHHHHHHHHHcCCCHHHCCEEEec---
Confidence 233479999999999999999999899999999998743111 122234788999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHhhcccCCC----Cceeecccc--chhhhHHhHHHHHHHHHHHHHHhCccCCCCCCCCCCCCCCCC
Q 011989 365 TPLGDTVEATAIRTVFSDHATSG----SLAFSSTKG--AIGHLLGAAGAVEAIFAVLAIHHGVAPLTLNLAKPDPIFNDN 438 (473)
Q Consensus 365 t~~~D~~E~~a~~~~~~~~~~~~----~~~v~s~k~--~~Gh~~~AsG~~~li~~~~~l~~~~ipp~~~~~~~~~~~~~~ 438 (473)
|++++..+...+.++. ..+++...+ .+|||.||+|+..++.++++|+.
T Consensus 309 -------d~F~~~~l~~~e~lg~~~~~~~~vN~~GG~la~GhP~GAtG~~~v~~l~~~L~~------------------- 362 (387)
T PRK08947 309 -------EAFAAQSLPCLKDLGLLDKMDEKVNLNGGAIALGHPLGCSGARISTTLLNLMER------------------- 362 (387)
T ss_pred -------ccchHHHHHHHHHcCCCCCCCCCcCCCCchhhcCCCccccHHHHHHHHHHHHHh-------------------
Confidence 8888888876555431 147777776 56999999999999999999975
Q ss_pred CCccccCCCCCCcEEEEeccccccceeeEEEeec
Q 011989 439 FMPLTASKDMPISAALSNSFGFGGTNASLLFTKC 472 (473)
Q Consensus 439 ~~~~~~~~~~~~~~~l~~s~g~gG~~~~~vl~~~ 472 (473)
.+.+++++++++-+|..+.+||+++
T Consensus 363 ---------~~~~~gl~~~~~g~G~g~a~~~e~~ 387 (387)
T PRK08947 363 ---------KDAQFGLATMCIGLGQGIATVFERV 387 (387)
T ss_pred ---------cCCCEEEEEEeecccceeEEEEEeC
Confidence 1356889999998888888888864
|
|
| >PRK08142 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.2e-23 Score=210.85 Aligned_cols=281 Identities=20% Similarity=0.239 Sum_probs=188.2
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCceeEEEecCCCChhhHHHHHHHHHHhccccCCCcchhhhhhhHHHHHHHHhcC
Q 011989 129 FIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYG 208 (473)
Q Consensus 129 ~~~la~~aa~~Al~dAgl~~~~~~~~~~~gvivg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lg 208 (473)
...|+.+|+++||+||||++.|++ +++..... . .. . ...++..+|
T Consensus 25 ~~~L~~eA~~~Al~DAgl~~~dID-----~~~~~~~~---------------------~-----~~--~--~~~~~~~lG 69 (388)
T PRK08142 25 VAQLHAEVAKGALADAGLSLADVD-----GYFCAGDA---------------------P-----GL--G--PASMVDYLG 69 (388)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCC-----EEEEcCCC---------------------C-----Cc--c--HHHHHHhCC
Confidence 368999999999999999888887 65542110 0 00 0 124888899
Q ss_pred CCC-CeeeecCCcchHHHHHHHHHHHHHcCCCCEEEEeecCCCcChH---H-------------H-----------HHHh
Q 011989 209 FQG-PNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDAL---S-------------M-----------AGFC 260 (473)
Q Consensus 209 l~G-p~~~v~~acasg~~Al~~A~~~I~~G~~d~vlv~g~d~~~~~~---~-------------~-----------~~~~ 260 (473)
+++ +...+.++|+++..++..|++.|++|.+|+|||+++|.+.... . + ..+.
T Consensus 70 l~~~~~~~v~~gg~s~~~a~~~A~~~I~sG~~d~vLvvg~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~Al~ 149 (388)
T PRK08142 70 LKLRHVDSTETGGSSYLAHVGHAAQAIAAGKCSVALITLAGRPRSEGSSGTEPRNWGADAPDAPFEAPYGPTTHNLYAMC 149 (388)
T ss_pred CCCeeeccccCCcHHHHHHHHHHHHHHHcCCCCEEEEEeeeecccCCccccccccccccccccchhcccccccHHHHHHH
Confidence 976 7778999999999999999999999999999999988743210 0 0 0000
Q ss_pred hhhccccccC------------------CCCCC----------------CCcCccCCCCceeeccceEEEEEccchHHHh
Q 011989 261 KSRALTTKYN------------------GTPQE----------------ASRPFDCGRDGFVIGEGSGVLVLEELEHAKK 306 (473)
Q Consensus 261 ~~~~~~~~~~------------------~~~~~----------------~~~pfd~~~~G~~~geGaaavvL~~~~~A~~ 306 (473)
..+.+. +++ ..|.. .+.|+. ..+...++|||+|+||.+++.|++
T Consensus 150 a~~ym~-~yG~t~e~la~vav~~~~~A~~NP~A~~r~~~t~e~vl~s~~Ia~Pl~-l~d~~~~~DGAaA~vl~s~~~A~~ 227 (388)
T PRK08142 150 AMRHMH-EYGTTSEQLAWIKVAASHHAQHNPHAMLRDVVTVEDVLNSPMIADPLH-RLDCCVVTDGGGALVVVRPEIARS 227 (388)
T ss_pred HHHHHH-HHCcCHHHHHHHHHHHHHHhccCChhhcCCCCCHHHHhcCCcccCCch-hhccCcccCceEEEEEecHHHHhh
Confidence 000000 000 01110 011111 123334799999999999999998
Q ss_pred cCCeEEEEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEEEEcCCCCCCCCHHHHHHHHHH-hhcc--
Q 011989 307 RGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTV-FSDH-- 383 (473)
Q Consensus 307 ~g~~~~a~i~g~~~~~d~~~~~~~~~~~~~~~~a~~~al~~agl~~~dId~v~~hgtgt~~~D~~E~~a~~~~-~~~~-- 383 (473)
.+. +.++|.|++..++......++........+++++|+++|++++|||++|+|.+-+.. |...+..+ |..+
T Consensus 228 l~~-~~v~I~g~~~~~~~~~~~~~~~~~~~~~~aa~~a~~~AGi~~~did~~elyD~Fs~~----~~~~~E~lGl~~~Ge 302 (388)
T PRK08142 228 LKR-PLVKVLGAGEAIKGQMGGKVDLTYSGAAWSGPAAFAEAGVTPADIKYASIYDSFTIT----VLMQLEDLGFCKKGE 302 (388)
T ss_pred cCC-CCEEEEEEEEecCCccccCcccccHHHHHHHHHHHHHcCCCHHHCCEEEEeccchHH----HHHHHHHcCCCCCCc
Confidence 864 448999999987765444555455566789999999999999999999999443332 33333332 1000
Q ss_pred ----------cC-CCCceeeccccc--hhhhHHhHHHHHHHHHHHHHHhCccCCCCCCCCCCCCCCCCCCccccCCCCCC
Q 011989 384 ----------AT-SGSLAFSSTKGA--IGHLLGAAGAVEAIFAVLAIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPI 450 (473)
Q Consensus 384 ----------~~-~~~~~v~s~k~~--~Gh~~~AsG~~~li~~~~~l~~~~ipp~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (473)
.. .+.+|||...+. .||+.+|+|+.+++++++||+...- ...|..+.
T Consensus 303 ~~~~v~~g~~~~~~G~lPvN~sGG~l~~G~p~gatG~~~~~E~~~QLrG~ag--------------------~~rQV~~a 362 (388)
T PRK08142 303 GGKFVADGNLISGVGKLPFNTDGGGLCNNHPANRGGMTKVIEAVRQLRGEAH--------------------PAVQVPNC 362 (388)
T ss_pred hHHHHHCCCcccCCCCccccCCChhhcCCCcCcccHHHHHHHHHHHHcCCCC--------------------CCCCCCCC
Confidence 01 267899988884 4899999999999999999996321 01233456
Q ss_pred cEEEEecccc-cc---ceeeEEEee
Q 011989 451 SAALSNSFGF-GG---TNASLLFTK 471 (473)
Q Consensus 451 ~~~l~~s~g~-gG---~~~~~vl~~ 471 (473)
+++|+++.|. .| .++.+||++
T Consensus 363 ~~gl~~~~Gg~~~~~~~~~~~vl~~ 387 (388)
T PRK08142 363 DLALAHGTGGLLGSRHGSATLILER 387 (388)
T ss_pred cEEEEeCCCCCCcCCCceEEEEEec
Confidence 7899988773 22 346666654
|
|
| >PRK08963 fadI 3-ketoacyl-CoA thiolase; Reviewed | Back alignment and domain information |
|---|
Probab=99.92 E-value=8.5e-24 Score=215.09 Aligned_cols=269 Identities=20% Similarity=0.249 Sum_probs=193.6
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCCceeEEEecCCCChhhHHHHHHHHHHhccccCCCcchhhhhhhHHHHHHHHhcCC
Q 011989 130 IAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYGF 209 (473)
Q Consensus 130 ~~la~~aa~~Al~dAgl~~~~~~~~~~~gvivg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lgl 209 (473)
..|+.+|+++||+|+|+++++++ .|++|+..... . ...++..++...|+
T Consensus 30 ~eL~~~a~~~al~~agl~~~~ID-----~vi~G~~~~~~-----------------------~---~~~~ar~~a~~aGl 78 (428)
T PRK08963 30 VDLGKMVVGELLARSEIDPELIE-----QLVFGQVVQMP-----------------------E---APNIAREIVLGTGM 78 (428)
T ss_pred HHHHHHHHHHHHHHcCCCHHHCC-----EEEEeccCCCC-----------------------C---ccHHHHHHHHHCCC
Confidence 67889999999999999988887 89999743210 0 12234468888999
Q ss_pred C-C-CeeeecCCcchHHHHHHHHHHHHHcCCCCEEEEeecCCCcChHHHH-H--------------Hh-------h----
Q 011989 210 Q-G-PNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMA-G--------------FC-------K---- 261 (473)
Q Consensus 210 ~-G-p~~~v~~acasg~~Al~~A~~~I~~G~~d~vlv~g~d~~~~~~~~~-~--------------~~-------~---- 261 (473)
. + |.++|+.+|+||+.|+..|+++|++|++|++||+|+|+++...... . +. .
T Consensus 79 ~~~~P~~tV~~aCaSG~~Ai~~Aa~~I~sG~~dvvLvgG~Esms~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (428)
T PRK08963 79 NVHTDAYSVSRACATSFQAVANVAESIMAGTIDIGIAGGADSSSVLPIGVSKKLARALVDLNKARTLGQRLKLFSRLRLR 158 (428)
T ss_pred CCCCcceeehhhhHHHHHHHHHHHHHHHCCCCCEEEEecccccCCCccccccccccchhccccccccCcccccccccchh
Confidence 6 3 9999999999999999999999999999999999999876432100 0 00 0
Q ss_pred -----------------h----hccccccCC------------------C----------------CCC-------CCcC
Q 011989 262 -----------------S----RALTTKYNG------------------T----------------PQE-------ASRP 279 (473)
Q Consensus 262 -----------------~----~~~~~~~~~------------------~----------------~~~-------~~~p 279 (473)
+ ..+.++|+- . |.. ..|+
T Consensus 159 ~~~~~~~~~~~~~~~~~m~~~A~~~~~~ygisre~~~~~avksh~~a~~~~~~g~~~~ei~p~~~~p~a~~~~~D~~~r~ 238 (428)
T PRK08963 159 DLLPVPPAVAEYSTGLRMGDTAEQMAKTYGISREEQDALAHRSHQLAAQAWAEGKLDDEVMTAHVPPYKQPLEEDNNIRG 238 (428)
T ss_pred hccccCcccccccCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHcCCCccceeeEEecCCceeeCCCCCCCC
Confidence 0 000001100 0 100 0110
Q ss_pred -------------ccC------CCCceeeccceEEEEEccchHHHhcCCeEEEEEEEEEEecCCCCCCCCCCChHHHHHH
Q 011989 280 -------------FDC------GRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILA 340 (473)
Q Consensus 280 -------------fd~------~~~G~~~geGaaavvL~~~~~A~~~g~~~~a~i~g~~~~~d~~~~~~~~~~~~~~~~a 340 (473)
|+. ..+...++|||+|+||++++.|++++.++.++|.+++...... ..+ .......+
T Consensus 239 ~~t~e~~~~~~~v~~p~~g~lt~~~~~~~~DGAaA~vl~see~A~~l~~~p~~~i~g~~~~~~~~---~~~-~~~~~~~a 314 (428)
T PRK08963 239 DSTLEDYAKLRPAFDRKHGTVTAANSTPLTDGAAAVLLMSESRAKALGLTPLGYLRSYAFAAIDV---WQD-MLLGPAYA 314 (428)
T ss_pred CCCHHHHhcCCccccCCCCceehhhcCCCCCceEEEEEecHHHHHHcCCCccEEEEEEecccCCc---hhh-hhhHHHHH
Confidence 100 0112226999999999999999999999989999988764110 011 12345678
Q ss_pred HHHHHHHcCCCCCCccEEEEcCCCCCCCCHHHHHHHHHHhhcccC---------------CCCc---eeecccc--chhh
Q 011989 341 MTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHAT---------------SGSL---AFSSTKG--AIGH 400 (473)
Q Consensus 341 ~~~al~~agl~~~dId~v~~hgtgt~~~D~~E~~a~~~~~~~~~~---------------~~~~---~v~s~k~--~~Gh 400 (473)
++++|+++|++++|||++|+| |++++..+...+.+ .+.+ |||...+ .+||
T Consensus 315 ~~~al~~AGl~~~DiD~~Ei~----------d~Fa~~~l~~~e~l~~~~~~~~~~g~~~~~G~~~~~pvN~~GG~la~Gh 384 (428)
T PRK08963 315 TPLALERAGLTLADLTLIDMH----------EAFAAQTLANLQMFASERFAREKLGRSQAIGEVDMSKFNVLGGSIAYGH 384 (428)
T ss_pred HHHHHHHcCCCHHHCCEEEEc----------cccHHHHHHHHHHhcCchhhhhcccccccCCCCCCCccCCCCCHHhcCC
Confidence 999999999999999999999 77777765533222 1345 8888888 4599
Q ss_pred hHHhHHHHHHHHHHHHHHhCccCCCCCCCCCCCCCCCCCCccccCCCCCCcEEEEeccccccceeeEEEee
Q 011989 401 LLGAAGAVEAIFAVLAIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPISAALSNSFGFGGTNASLLFTK 471 (473)
Q Consensus 401 ~~~AsG~~~li~~~~~l~~~~ipp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~g~gG~~~~~vl~~ 471 (473)
|.||+|+..++++++||+.+ ..+++|++..+-||...++||++
T Consensus 385 P~gasG~~~~~e~~~qLrg~----------------------------~g~~gl~~~c~ggG~g~a~~ie~ 427 (428)
T PRK08963 385 PFAATGARMITQTLHELRRR----------------------------GGGLGLTTACAAGGLGAAMVLEV 427 (428)
T ss_pred CccccHHHHHHHHHHHHhhc----------------------------CCCEEEEEEccccChhhEEEEEe
Confidence 99999999999999999852 13478999999999999999986
|
|
| >TIGR02445 fadA fatty oxidation complex, beta subunit FadA | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.4e-23 Score=210.45 Aligned_cols=271 Identities=21% Similarity=0.264 Sum_probs=192.2
Q ss_pred HHHHHHHHHHHHHHH-cCCCCCCCCCCCceeEEEecCCCChhhHHHHHHHHHHhccccCCCcchhhhhhhHHHHHHHHhc
Q 011989 129 FIAYALCAADEALHD-AKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKY 207 (473)
Q Consensus 129 ~~~la~~aa~~Al~d-Agl~~~~~~~~~~~gvivg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~l 207 (473)
...|+.+++++||++ +|+++++++ .|++|+...... .+ ..++..++...
T Consensus 25 ~~~L~~~a~~~al~~~agl~~~~Id-----~v~~G~~~~~~~----------------------~g---~~~ar~~~~~~ 74 (385)
T TIGR02445 25 AEDLSAHLMSKLLARNPKVDPAEVE-----DIYWGCVQQTLE----------------------QG---FNIARNAALLA 74 (385)
T ss_pred HHHHHHHHHHHHHHhccCCCHHHcC-----EEEEeccccccc----------------------cc---chHHHHHHHHC
Confidence 368999999999994 699998888 899997431100 01 11333445455
Q ss_pred CCCC--CeeeecCCcchHHHHHHHHHHHHHcCCCCEEEEeecCCCcChHHH------HHHh--------hh----hcccc
Q 011989 208 GFQG--PNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSM------AGFC--------KS----RALTT 267 (473)
Q Consensus 208 gl~G--p~~~v~~acasg~~Al~~A~~~I~~G~~d~vlv~g~d~~~~~~~~------~~~~--------~~----~~~~~ 267 (473)
|+.. |+++|+.+|+||+.|+..|+++|++|++|++|++|+|+++..... ..+. .. ..+..
T Consensus 75 g~~~~~p~~tV~~~CaSG~~Ai~~Aa~~I~sG~~d~vlagG~E~ms~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 154 (385)
T TIGR02445 75 QIPHTSAAVTVNRLCGSSMQALHDAARAIMTGDADVCLVGGVEHMGHVPMMHGVDFHPGMSLHVAKAAGMMGLTAEMLGK 154 (385)
T ss_pred CCCCCcchhhhhhhhHHHHHHHHHHHHHHHCCCCCEEEEeeehhcccCccccCCCcchhHHhhhccccchHHHHHHHHHH
Confidence 6543 679999999999999999999999999999999999987533210 0000 00 00000
Q ss_pred ccC---------------------------C-----------------CCCCCCcC-------------ccC------CC
Q 011989 268 KYN---------------------------G-----------------TPQEASRP-------------FDC------GR 284 (473)
Q Consensus 268 ~~~---------------------------~-----------------~~~~~~~p-------------fd~------~~ 284 (473)
+|+ . .++...|+ |+. ..
T Consensus 155 ~ygitre~~d~~A~~sh~~a~~a~~~g~f~nei~pv~~~~~~~~~~~~~~da~~r~~~t~e~~~~~~~v~~p~~g~lt~~ 234 (385)
T TIGR02445 155 MHGISREQQDAFAARSHARAHAATQEGKFKNEIIPTQGHDADGFLKQFDYDEVIRPETTVESLAALRPAFDPKNGTVTAG 234 (385)
T ss_pred HhCCCHHHHHHHHHHHHHHHHHHHHcCCCccceeeeeeccCCCCceeeCCCCCCCCCCCHHHHhcCCceecCCCCceecc
Confidence 000 0 02222221 111 01
Q ss_pred CceeeccceEEEEEccchHHHhcCCeEEEEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEEEEcCCC
Q 011989 285 DGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYVNAHATS 364 (473)
Q Consensus 285 ~G~~~geGaaavvL~~~~~A~~~g~~~~a~i~g~~~~~d~~~~~~~~~~~~~~~~a~~~al~~agl~~~dId~v~~hgtg 364 (473)
+...++||++++||++++.|++++.+++++|.|++.... .+.....+...+++++|+++||+|+|||++|+|
T Consensus 235 ~~~~~sDGAaavvL~s~e~A~~~g~~~~a~I~g~~~~~~-----~~~~~~~~~~~a~~~al~~AGi~p~DId~~Ei~--- 306 (385)
T TIGR02445 235 TSSALSDGASAMLVMSEQRANELGLKPRARIRSMAVAGC-----DPSIMGYGPVPATQKALKRAGLSISDIDVFELN--- 306 (385)
T ss_pred cCCCcCCceEEEEEecHHHHHHCCCCeeEEEEEEEEcCC-----CCcccchhHHHHHHHHHHHcCCCHHHcCEEEEc---
Confidence 223379999999999999999999999999999998742 122222345789999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHhhcccCC--C--Cceeecccc--chhhhHHhHHHHHHHHHHHHHHhCccCCCCCCCCCCCCCCCC
Q 011989 365 TPLGDTVEATAIRTVFSDHATS--G--SLAFSSTKG--AIGHLLGAAGAVEAIFAVLAIHHGVAPLTLNLAKPDPIFNDN 438 (473)
Q Consensus 365 t~~~D~~E~~a~~~~~~~~~~~--~--~~~v~s~k~--~~Gh~~~AsG~~~li~~~~~l~~~~ipp~~~~~~~~~~~~~~ 438 (473)
|++++..+...+.++ . ..++|...+ .+|||.||+|+..++.+++.|++
T Consensus 307 -------daFa~~~l~~~e~lg~~~~g~~~vN~~GG~la~GhP~GATG~r~v~~l~~~l~~------------------- 360 (385)
T TIGR02445 307 -------EAFAAQALPCLKDLGLLDKMDEKVNLNGGAIALGHPLGCSGARISTTLLNLMEQ------------------- 360 (385)
T ss_pred -------cccHHHHHHHHHHcCCCCCCCCCcCCCCchhhcCCCccccHHHHHHHHHHHHHh-------------------
Confidence 888888887655543 1 257777777 56999999999888888755542
Q ss_pred CCccccCCCCCCcEEEEeccccccceeeEEEeec
Q 011989 439 FMPLTASKDMPISAALSNSFGFGGTNASLLFTKC 472 (473)
Q Consensus 439 ~~~~~~~~~~~~~~~l~~s~g~gG~~~~~vl~~~ 472 (473)
.+.++.|+.+.+-||.-.++|||++
T Consensus 361 ---------~~~~~Gl~~~~~g~g~g~a~~~e~~ 385 (385)
T TIGR02445 361 ---------KDATFGLATMCIGLGQGIATVFERV 385 (385)
T ss_pred ---------cCCCeEEEEEecccChhheEEEEeC
Confidence 1246789999999999999999874
|
This subunit of the FadBA complex has acetyl-CoA C-acyltransferase (EC 2.3.1.16) activity, and is also known as beta-ketothiolase and fatty oxidation complex, beta subunit. This protein is almost always located adjacent to FadB (TIGR02437). The FadBA complex is the major complex active for beta-oxidation of fatty acids in E. coli. |
| >PRK06066 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.9e-23 Score=208.47 Aligned_cols=275 Identities=20% Similarity=0.203 Sum_probs=183.7
Q ss_pred HHHHHHHHHHHHHHHcC-CCC-CCCCCCCceeEEEecCCCChhhHHHHHHHHHHhccccCCCcchhhhhhhHHHHHHHHh
Q 011989 129 FIAYALCAADEALHDAK-WLP-SDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMK 206 (473)
Q Consensus 129 ~~~la~~aa~~Al~dAg-l~~-~~~~~~~~~gvivg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~ 206 (473)
...|+.+|+++||+||| +++ .|++ ++++++. ... .... .....++..
T Consensus 25 ~~eL~~eA~~~Al~DAG~l~~~~dId-----~~~~~~~-~~~------------------~~~~-------~~~~~~~~~ 73 (385)
T PRK06066 25 FREMMFEAASRAYKDAGNINPRRDVD-----SFISCQE-DFW------------------EGIA-------IADEFAPDQ 73 (385)
T ss_pred HHHHHHHHHHHHHHhcCCCCChhcCC-----EEEEecC-ccc------------------Cccc-------ccchhHHHH
Confidence 46799999999999999 986 6887 7877531 100 0000 001135567
Q ss_pred cCCC-CCeeeecCCcchHHHHHHHHHHHHHcCCCCEEEEeecCCCcChHH------------------------HHHHhh
Q 011989 207 YGFQ-GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALS------------------------MAGFCK 261 (473)
Q Consensus 207 lgl~-Gp~~~v~~acasg~~Al~~A~~~I~~G~~d~vlv~g~d~~~~~~~------------------------~~~~~~ 261 (473)
+|+. .|.+.+ |+|+..++..|+++|++|.+|+|||++++.+..... +..+..
T Consensus 74 lg~~~~~~~~v---~~sg~~a~~~A~~aV~sG~~d~vLv~g~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~p~~~~al~a 150 (385)
T PRK06066 74 IGGAMRPTMTV---AGDGLQGLAHAVMHINSGLANVVVVEAHSKPSDILTFSDVVKFAMDPIYVRPIGPPNPHFIAGLDA 150 (385)
T ss_pred cccCCCCeEEE---eCcHHHHHHHHHHHHHcCCCCEEEEEEEeeccCccchhhhhhcccCcceecccCCCcHHHHHHHHH
Confidence 8874 377776 889999999999999999999999999986433100 001111
Q ss_pred hhccccccCC------------------CCCCC-CcCcc--------------CCCCceeeccceEEEEEccchHHHhcC
Q 011989 262 SRALTTKYNG------------------TPQEA-SRPFD--------------CGRDGFVIGEGSGVLVLEELEHAKKRG 308 (473)
Q Consensus 262 ~~~~~~~~~~------------------~~~~~-~~pfd--------------~~~~G~~~geGaaavvL~~~~~A~~~g 308 (473)
.+.+.+ ++. .|... ..|++ ...+-..++|||+|+||.+++.|++.+
T Consensus 151 ~rym~~-yG~t~E~lA~Vavk~r~nA~~NP~A~~r~~~t~edvl~S~~ia~Pl~~~d~~~~~DGAaAvvl~s~~~a~~l~ 229 (385)
T PRK06066 151 VKFMSR-KGITREDLALVVEKNKKAGLSNPRASYASNISLEDVLSSEYVVYPLTELDIAPFVDGAIVVVLASEEVAKKLT 229 (385)
T ss_pred HHHHHH-HCcCHHHHHHHHHHHHHHHhcCChhhcCCCCCHHHHhcCCcccCCchhhccCCCCCceEEEEEeCHHHHHhcC
Confidence 011100 000 01000 00111 012223379999999999999999888
Q ss_pred CeEEEEEEEEEEecCCCCCCCCCC-ChHHHHHHHHHHHHHcCCC--CCCccEEEEcCCCCCCCCHHHHHHHHHHhhccc-
Q 011989 309 AKIYAEVRGYGMSGDAHHITQPHI-DGKGAILAMTRALKQSGLQ--SHQVDYVNAHATSTPLGDTVEATAIRTVFSDHA- 384 (473)
Q Consensus 309 ~~~~a~i~g~~~~~d~~~~~~~~~-~~~~~~~a~~~al~~agl~--~~dId~v~~hgtgt~~~D~~E~~a~~~~~~~~~- 384 (473)
.++. +|.|++...+.......+. .......+++++|+++||+ ++|||++|+| |++++..+...+.
T Consensus 230 ~~pv-~I~g~g~~~~~~~~~~~~~~~~~~~~~Aa~~a~~~AGi~~p~~DiD~~ei~----------D~Ft~~~l~~~e~l 298 (385)
T PRK06066 230 DDPV-WIKGIGWSTESSNLETAELGKANYMRIAADMAYKMAGIESPRKEVDAAEVD----------DRYSYKELQHIEAL 298 (385)
T ss_pred CCCE-EEEEEEEecCCcccccccccccHHHHHHHHHHHHHcCCCCCHHHCcEEEEe----------cCChHHHHHHHHHc
Confidence 7774 9999988765332221111 1223347999999999998 6999999999 6665555543322
Q ss_pred ------------------CCCCceeeccccc--hhhhHHhHHHHHHHHHHHHHHhCccCCCCCCCCCCCCCCCCCCcccc
Q 011989 385 ------------------TSGSLAFSSTKGA--IGHLLGAAGAVEAIFAVLAIHHGVAPLTLNLAKPDPIFNDNFMPLTA 444 (473)
Q Consensus 385 ------------------~~~~~~v~s~k~~--~Gh~~~AsG~~~li~~~~~l~~~~ipp~~~~~~~~~~~~~~~~~~~~ 444 (473)
.++++|||...+. .||+.+|+|+..++++++||+... ..
T Consensus 299 G~~~~Ge~~~~v~~G~~~~~G~~PvN~~GG~la~Ghp~gatG~~~v~e~~~QL~g~A---------------------g~ 357 (385)
T PRK06066 299 RLSEEPEKDSLLREGNFDPQGELPVNPSGGHLAKGVPLEASGLSLLLDAVEYLRGEA---------------------GA 357 (385)
T ss_pred CCCCCCchHHHHHCCCCCCCCCccccCCCchhcCCCccchhHHHHHHHHHHHHcccc---------------------cc
Confidence 2357899999984 599999999999999999999743 23
Q ss_pred CCCCCCcEEEEeccc--cccceeeEEEee
Q 011989 445 SKDMPISAALSNSFG--FGGTNASLLFTK 471 (473)
Q Consensus 445 ~~~~~~~~~l~~s~g--~gG~~~~~vl~~ 471 (473)
.| .+.+++++.+.| +++..+.+||++
T Consensus 358 rQ-~~a~~~l~~~~gg~~~~~~~v~v~~~ 385 (385)
T PRK06066 358 RQ-GKAERAVVASWRGIPTLTGSVVVVER 385 (385)
T ss_pred cC-CCCcEEEEcCCCccCCccEEEEEEeC
Confidence 34 567888888877 556777777774
|
|
| >cd00826 nondecarbox_cond_enzymes nondecarboxylating condensing enzymes; In general, thiolases catalyze the reversible thiolytic cleavage of 3-ketoacyl-CoA into acyl-CoA and acetyl-CoA, a 2-step reaction involving a covalent intermediate formed with a catalytic cysteine | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.5e-23 Score=211.07 Aligned_cols=279 Identities=22% Similarity=0.270 Sum_probs=188.3
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCCCCCCceeEEEecCCCChhhHHHHHHHHHHhccccCCCcchhhhhhhHHHHHHHHhc
Q 011989 128 RFIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKY 207 (473)
Q Consensus 128 ~~~~la~~aa~~Al~dAgl~~~~~~~~~~~gvivg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~l 207 (473)
...+|+..|+++||+++|+++++++ .|++|+..+... + .+.....+...+
T Consensus 22 ~~~el~~~a~~~Al~~agl~p~dID-----~vi~g~~~~~~~-----------------------g--~~~~~~~~~~~l 71 (393)
T cd00826 22 LAHEAGAKAIAAALEPAGVAAGAVE-----EACLGQVLGAGE-----------------------G--QNCAQQAAMHAG 71 (393)
T ss_pred CHHHHHHHHHHHHHHHcCCCHHHCC-----EEEEEEccCCcc-----------------------c--CcHHHHHHHHcC
Confidence 4578899999999999999988887 888987543210 0 011111255667
Q ss_pred CCCC-CeeeecCCcchHHHHHHHHHHHHHcCCCCEEEEeecCCCcChHH-------HHH----Hh--------------h
Q 011989 208 GFQG-PNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALS-------MAG----FC--------------K 261 (473)
Q Consensus 208 gl~G-p~~~v~~acasg~~Al~~A~~~I~~G~~d~vlv~g~d~~~~~~~-------~~~----~~--------------~ 261 (473)
|+.+ |+++|+++|+|++.||..|+++|++|++|++||+|+|.++.... ... +. .
T Consensus 72 g~~~~p~~~V~~~Casg~~al~~A~~~I~sG~~~~vlv~g~e~~s~~~~~~~~~~~~~~~~~~~~~r~~~~~~a~~s~~~ 151 (393)
T cd00826 72 GLQEAPAIGMNNLCGSGLRALALAMQLIAGGDANCILAGGFEKMETSAENNAKEKHIDVLINKYGMRACPDAFALAGQAG 151 (393)
T ss_pred CCCCCcEEEecchhHHHHHHHHHHHHHHHCCCCCEEEEEeeeccccCcccccccchhHHHHHHhCChhhccHHHHHHHHH
Confidence 8776 99999999999999999999999999999999999998653210 000 00 0
Q ss_pred hhcccccc------------CC---------CCCCCC-cCcc-----------------CCCCceeeccceEEEEEccch
Q 011989 262 SRALTTKY------------NG---------TPQEAS-RPFD-----------------CGRDGFVIGEGSGVLVLEELE 302 (473)
Q Consensus 262 ~~~~~~~~------------~~---------~~~~~~-~pfd-----------------~~~~G~~~geGaaavvL~~~~ 302 (473)
...+. ++ +. +|.... .|.+ ...+-..++|||+++||.+++
T Consensus 152 ~~~~~-~~G~~~e~~a~v~~~~~~~~~~a~~np~a~~~~~~t~e~~~~~~~i~~~~~pl~~~~~~~~~DGAAA~vl~S~~ 230 (393)
T cd00826 152 AEAAE-KDGRFKDEFAKFGVKGRKGDIHSDADEYIQFGDEASLDEIAKLRPAFDKEDFLTAGNACGLNDGAAAAILMSEA 230 (393)
T ss_pred HHHHH-HcCCCHHHEEEEEEecCCCCEEEecCCCCCCCCCCCHHHHhcCCCccCCCCCEechhcCCcCCCeEEEEEecHH
Confidence 00000 00 00 010000 0111 011122268999999999999
Q ss_pred HHHhcCC-eEEEEEEEEEEecCCCC-CCCCC----CChHHHHHHHHHHHHHcCCCCCCccEEEEcCCCCCCCCHHHHHHH
Q 011989 303 HAKKRGA-KIYAEVRGYGMSGDAHH-ITQPH----IDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAI 376 (473)
Q Consensus 303 ~A~~~g~-~~~a~i~g~~~~~d~~~-~~~~~----~~~~~~~~a~~~al~~agl~~~dId~v~~hgtgt~~~D~~E~~a~ 376 (473)
.|++.+. ...++|.+.+...+... ...|+ ....+...+++++|+++||+++|||++|+| |++++
T Consensus 231 ~a~~l~l~~~~v~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~al~~Agi~~~DID~~Ei~----------d~Fa~ 300 (393)
T cd00826 231 EAQKHGLQSKAREIQALEMITDMASTFEDKKVIKMVGGDGPIEAARKALEKAGLGIGDLDLIEAH----------DAFAA 300 (393)
T ss_pred HHHHcCCcccccccceEEEEEeeeccccCccccccccceeHHHHHHHHHHHcCCCHHHcCeeehh----------hhhHH
Confidence 9998774 22245666555443221 12232 233455799999999999999999999999 99988
Q ss_pred HHHhhcccCC-------------------CCceeecccc--chhhhHHhHHHHHHHHHHHHHHhCccCCCCCCCCCCCCC
Q 011989 377 RTVFSDHATS-------------------GSLAFSSTKG--AIGHLLGAAGAVEAIFAVLAIHHGVAPLTLNLAKPDPIF 435 (473)
Q Consensus 377 ~~~~~~~~~~-------------------~~~~v~s~k~--~~Gh~~~AsG~~~li~~~~~l~~~~ipp~~~~~~~~~~~ 435 (473)
..++..+.++ +.+|||...+ .+|||.||+|+..++++++||+...
T Consensus 301 ~~l~~~e~lgl~~~g~~~~~~~~g~~~~~G~~pvN~~GG~la~GhP~gAtG~~~~~e~~~qL~g~a-------------- 366 (393)
T cd00826 301 NACATNEALGLCPEGQGGALVDRGDNTYGGKSIINPNGGAIAIGHPIGASGAAICAELCFELKGEA-------------- 366 (393)
T ss_pred HHHHHHHHhCCCcccchhhhhhcCccccCCcceECCCCchhhcCCCccccHHHHHHHHHHHHhhhh--------------
Confidence 8887544322 3489999988 4599999999999999999998632
Q ss_pred CCCCCccccCCCCCCcEEEEeccccccceeeEEEe
Q 011989 436 NDNFMPLTASKDMPISAALSNSFGFGGTNASLLFT 470 (473)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~l~~s~g~gG~~~~~vl~ 470 (473)
...|..+.+.+++.+.| |..+++|++
T Consensus 367 -------g~~q~~~~~~~~~~~~G--g~g~a~~~~ 392 (393)
T cd00826 367 -------GKRQGAGAGLALLCIGG--GGGAAMCIE 392 (393)
T ss_pred -------ccccCCCcCEEEEEcCC--CceeEEEEe
Confidence 12233456788877666 456667765
|
There are 2 functional different classes: thiolase-I (3-ketoacyl-CoA thiolase) and thiolase-II (acetoacetyl-CoA thiolase). Thiolase-I can cleave longer fatty acid molecules and plays an important role in the beta-oxidative degradation of fatty acids. Thiolase-II has a high substrate specificity. Although it can cleave acetoacyl-CoA, its main function is the synthesis of acetoacyl-CoA from two molecules of acetyl-CoA, which gives it importance in several biosynthetic pathways. |
| >PRK08170 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.5e-23 Score=213.39 Aligned_cols=270 Identities=23% Similarity=0.322 Sum_probs=194.8
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCceeEEEecCCCChhhHHHHHHHHHHhccccCCCcchhhhhhhHHHHHHHHhcC
Q 011989 129 FIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYG 208 (473)
Q Consensus 129 ~~~la~~aa~~Al~dAgl~~~~~~~~~~~gvivg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lg 208 (473)
...|+.+|+++||+|||+++++++ .|++|+.... .. ...++..++..+|
T Consensus 27 ~~~L~~~A~~~Al~dAgl~~~dID-----~vi~g~~~~~------------------------~~--~~~~a~~v~~~lG 75 (426)
T PRK08170 27 ASDLAVAAGRALLNRQPFAPDDLD-----EVILGCAMPS------------------------PD--EANIARVVALRLG 75 (426)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCC-----EEEEEeccCC------------------------CC--cChHHHHHHHHhC
Confidence 368999999999999999998888 8999864311 00 0134456888999
Q ss_pred CCC--CeeeecCCcchHHHHHHHHHHHHHcCCCCEEEEeecCCCcChHH----------------------H-------H
Q 011989 209 FQG--PNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALS----------------------M-------A 257 (473)
Q Consensus 209 l~G--p~~~v~~acasg~~Al~~A~~~I~~G~~d~vlv~g~d~~~~~~~----------------------~-------~ 257 (473)
+.. |.++++.+|+|++.+|.+|+++|++|.+|++||+|+|.++.... + .
T Consensus 76 l~~~~p~~~v~~~CaSg~~al~~A~~~I~sG~~d~vLv~G~E~ms~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (426)
T PRK08170 76 CGEKVPAWTVQRNCASGMQALDSAAANIALGRADLVLAGGVEAMSHAPLLFSEKMVRWLAGWYAAKSIGQKLAALGKLRP 155 (426)
T ss_pred cCCCceeeeccchhhHHHHHHHHHHHHHHCCCCCEEEEEEEecccCCccccccccccchhccccccccCccccccccccc
Confidence 953 99999999999999999999999999999999999997543110 0 0
Q ss_pred HHh-----------------hhhcccc----ccCC------------------------------------CC---CCCC
Q 011989 258 GFC-----------------KSRALTT----KYNG------------------------------------TP---QEAS 277 (473)
Q Consensus 258 ~~~-----------------~~~~~~~----~~~~------------------------------------~~---~~~~ 277 (473)
.+. .....++ +++. .| +...
T Consensus 156 ~~~~~~~~~~~g~~~~~~~~~~a~~a~~~~~~ygitre~~a~vav~s~~~a~~A~~~g~~~~i~pv~~~~~np~a~de~~ 235 (426)
T PRK08170 156 SYLAPVIGLLRGLTDPVVGLNMGQTAEVLAHRFGITREQMDAYAARSHQRLAAAQAEGRLKEVVPLFDRDGKFYDHDDGV 235 (426)
T ss_pred cccccccccCccccccccCcCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHcCCcceEeeeecCCCCeeccCCCC
Confidence 000 0000000 0000 00 0001
Q ss_pred cC-------------ccCC------CCceeeccceEEEEEccchHHHhcCCeEEEEEEEEEEecCCCCCCCCCCChHHHH
Q 011989 278 RP-------------FDCG------RDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAI 338 (473)
Q Consensus 278 ~p-------------fd~~------~~G~~~geGaaavvL~~~~~A~~~g~~~~a~i~g~~~~~d~~~~~~~~~~~~~~~ 338 (473)
|| |+.. .+...++|||+|+||++++.|++++.++.++|.+++.... .|.....+..
T Consensus 236 r~~~t~e~~~~~~~v~~~p~~~lt~~~~s~~~DGAaA~vl~s~e~A~~~~~~p~~~i~~~~~~~~-----~~~~~~~~~~ 310 (426)
T PRK08170 236 RPDSSMEKLAKLKPFFDRPYGRVTAGNSSQITDGACWLLLASEEAVKKYGLPPLGRIVDSQWAAL-----DPSQMGLGPV 310 (426)
T ss_pred CCCCCHHHHhcCCCcccCCCCCEeccccCCCCCceEEEEEecHHHHHHCCCCceEEEEEeeEeee-----CchhhcccHH
Confidence 11 1100 2223379999999999999999999888889999877653 2222333457
Q ss_pred HHHHHHHHHcCCCCCCccEEEEcCCCCCCCCHHHHHHHHHHhhcccC------------------CCCceeecccc--ch
Q 011989 339 LAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHAT------------------SGSLAFSSTKG--AI 398 (473)
Q Consensus 339 ~a~~~al~~agl~~~dId~v~~hgtgt~~~D~~E~~a~~~~~~~~~~------------------~~~~~v~s~k~--~~ 398 (473)
.+++++|+++||+++|||++|+| |++++..+.....+ -...|||...+ .+
T Consensus 311 ~a~~~al~~aGl~~~did~~ei~----------daFa~~~l~~l~~le~lGf~~~G~g~~~~~G~~~~~pvN~~GG~la~ 380 (426)
T PRK08170 311 HAATPLLQRHGLTLEDLDLWEIN----------EAFAAQVLACLAAWADEEYCREQLGLDGALGELDRERLNVDGGAIAL 380 (426)
T ss_pred HHHHHHHHHcCCCHHHcCEEEec----------chhHHHHHHHHHHhccccchhcccccccccCCCCcceecCCCCHHHh
Confidence 89999999999999999999999 99998877433211 02358888888 45
Q ss_pred hhhHHhHHHHHHHHHHHHHHhCccCCCCCCCCCCCCCCCCCCccccCCCCCCcEEEEeccccccceeeEEEeec
Q 011989 399 GHLLGAAGAVEAIFAVLAIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPISAALSNSFGFGGTNASLLFTKC 472 (473)
Q Consensus 399 Gh~~~AsG~~~li~~~~~l~~~~ipp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~g~gG~~~~~vl~~~ 472 (473)
|||.||+|+..+..++.+|++ .+.++.+++...-||.-.++|||+.
T Consensus 381 GHP~GAtG~~~~~~l~~~l~~----------------------------~~~~~g~~~~c~~gg~g~a~~~e~~ 426 (426)
T PRK08170 381 GHPVGASGARIVLHLLHALKR----------------------------RGTKRGIAAICIGGGQGGAMLLERV 426 (426)
T ss_pred CCCccCccHHHHHHHHHHHHh----------------------------hCCCeEEEEEecCCChhheEEEEeC
Confidence 999999999999999999975 1245788888999999999999873
|
|
| >PRK06504 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.3e-23 Score=206.84 Aligned_cols=270 Identities=19% Similarity=0.195 Sum_probs=188.1
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCCceeEEEecCCCChhhHHHHHHHHHHhccccCCCcchhhhhhhHHHHH--HHHhc
Q 011989 130 IAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGH--VSMKY 207 (473)
Q Consensus 130 ~~la~~aa~~Al~dAgl~~~~~~~~~~~gvivg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~--ia~~l 207 (473)
..|+.+++++||+|+|+++++++ .+++|+.... +.....++.. +..-|
T Consensus 27 ~~L~~~a~~~al~~a~l~~~~Id-----~vi~G~~~~~-------------------------~~~~~~~ar~~~l~~gl 76 (390)
T PRK06504 27 ADLAAQVLDALVDRSGADPALIE-----DVIMGCVSQV-------------------------GEQATNVARNAVLASKL 76 (390)
T ss_pred HHHHHHHHHHHHHHcCCCHHHCC-----EEEEEecccc-------------------------ccccccHHHHHHHHcCC
Confidence 68899999999999999998888 8999875410 0000011112 22223
Q ss_pred CCCCCeeeecCCcchHHHHHHHHHHHHHcCCCCEEEEeecCCCcChHH-HHH---------------Hhh----------
Q 011989 208 GFQGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALS-MAG---------------FCK---------- 261 (473)
Q Consensus 208 gl~Gp~~~v~~acasg~~Al~~A~~~I~~G~~d~vlv~g~d~~~~~~~-~~~---------------~~~---------- 261 (473)
+..-|.++|+.+|+||+.|+..|+++|++|++|++||+|+|+++.... ... +..
T Consensus 77 ~~~vP~~tV~~~CaSG~~Ai~~A~~~I~sG~~dvvLagGvEsmS~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (390)
T PRK06504 77 PESVPGTSIDRQCGSSQQALHFAAQAVMSGTMDIVIAAGVESMTRVPMGSPSTLPAKNGLGHYKSPGMEERYPGIQFSQF 156 (390)
T ss_pred CCCCceEEEechhhHHHHHHHHHHHHHHCCCCCEEEEeeeeecCCCccccccccccccccccccccccccccCCCCCCHH
Confidence 333499999999999999999999999999999999999998764221 000 000
Q ss_pred --hhccccccCCC-----------------------CCC---------------------------------CCcCccC-
Q 011989 262 --SRALTTKYNGT-----------------------PQE---------------------------------ASRPFDC- 282 (473)
Q Consensus 262 --~~~~~~~~~~~-----------------------~~~---------------------------------~~~pfd~- 282 (473)
...+.+.|+-+ ... ..+|...
T Consensus 157 ~aae~~a~~ygisre~~d~~A~ksh~~A~~a~~ag~f~~ei~p~~~~~~~~~~~~~~~De~~r~~~t~e~l~~~~~~~~~ 236 (390)
T PRK06504 157 TGAEMMAKKYGLSKDQLDEFALQSHQRAIAATQAGKFKAEIVPLEITRADGSGEMHTVDEGIRFDATLEGIAGVKLIAEG 236 (390)
T ss_pred HHHHHHHHHhCcCHHHHHHHHHHHHHHHHHhHHcCCCccccccccccCCCCCceEEccCCCCCCCCCHHHHhcCCCCCCC
Confidence 00000111000 000 1111210
Q ss_pred ----CCCceeeccceEEEEEccchHHHhcCCeEEEEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEE
Q 011989 283 ----GRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYV 358 (473)
Q Consensus 283 ----~~~G~~~geGaaavvL~~~~~A~~~g~~~~a~i~g~~~~~d~~~~~~~~~~~~~~~~a~~~al~~agl~~~dId~v 358 (473)
..+...++|||+|+||.+++.|++.+.++.++|.+++.... .+.....+...+++++|+++|++++|||++
T Consensus 237 g~lt~~n~s~~~DGAaA~vl~s~~~A~~l~~~p~~~i~~~~~~~~-----~~~~~~~~~~~a~~~a~~~agl~~~Did~~ 311 (390)
T PRK06504 237 GRLTAATASQICDGASGVMVVNERGLKALGVKPLARIHHMTVIGG-----DPVIMLEAPLPATERALKKAGMKIDDIDLY 311 (390)
T ss_pred CCCcCccCCCCCCceEEEEEecHHHHHHcCCCceEEEEEEEEeec-----CchhhhccHHHHHHHHHHHcCCCHHHCCEE
Confidence 01222378999999999999999988888778888876543 121223355679999999999999999999
Q ss_pred EEcCCCCCCCCHHHHHHHHHHhhcccCCC-Cceeecccc--chhhhHHhHHHHHHHHHHHHHHhCccCCCCCCCCCCCCC
Q 011989 359 NAHATSTPLGDTVEATAIRTVFSDHATSG-SLAFSSTKG--AIGHLLGAAGAVEAIFAVLAIHHGVAPLTLNLAKPDPIF 435 (473)
Q Consensus 359 ~~hgtgt~~~D~~E~~a~~~~~~~~~~~~-~~~v~s~k~--~~Gh~~~AsG~~~li~~~~~l~~~~ipp~~~~~~~~~~~ 435 (473)
|+| |++++..+...+.++. +-|+|...+ .+||+.+|+|+..+...+.+|++.
T Consensus 312 Ei~----------d~Fa~~~l~~~e~lG~~~~pvN~~GG~la~Ghp~gatG~r~~~~l~~~lr~~--------------- 366 (390)
T PRK06504 312 EVN----------EAFASVPLAWLKATGADPERLNVNGGAIALGHPLGASGTKLMTTLVHALKQR--------------- 366 (390)
T ss_pred Eec----------ccchHHHHHHHHHhCCCCCCcCCCCcHHhcCCCcchhHHHHHHHHHHHHHhh---------------
Confidence 999 8888887776555431 236666666 679999999999999999999851
Q ss_pred CCCCCccccCCCCCCcEEEEeccccccceeeEEEeec
Q 011989 436 NDNFMPLTASKDMPISAALSNSFGFGGTNASLLFTKC 472 (473)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~l~~s~g~gG~~~~~vl~~~ 472 (473)
+.++.+.+++|.||..+++||+++
T Consensus 367 -------------~~~~gl~~~~~ggg~g~a~ile~~ 390 (390)
T PRK06504 367 -------------GKRYGLQTMCEGGGMANVTIVERL 390 (390)
T ss_pred -------------CCCeEEEEEeecccceeEEEEEeC
Confidence 245778888888899999999863
|
|
| >PRK07801 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.9e-23 Score=208.91 Aligned_cols=270 Identities=19% Similarity=0.221 Sum_probs=185.9
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCceeEEEecCCCChhhHHHHHHHHHHhccccCCCcchhhhhhhHHHHHHHHhcC
Q 011989 129 FIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYG 208 (473)
Q Consensus 129 ~~~la~~aa~~Al~dAgl~~~~~~~~~~~gvivg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lg 208 (473)
...|+.+|+++||+|||+++++++ +|++|+.... . .. ...++..+....|
T Consensus 26 ~~~L~~~a~~~al~dagl~~~~ID-----~vv~g~~~~~-------------------~-----~~-~~~~~~~~~l~~g 75 (382)
T PRK07801 26 PADLGAHVLKGLVDRTGIDPAAVD-----DVIFGCVDTI-------------------G-----PQ-AGNIARTSWLAAG 75 (382)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHcC-----EEEEEeeccC-------------------C-----cc-cccHHHHHHHHcC
Confidence 367899999999999999998888 8888853100 0 00 0001111222334
Q ss_pred C--CCCeeeecCCcchHHHHHHHHHHHHHcCCCCEEEEeecCCCcC-hH--H--HH---H----------H-hhhh----
Q 011989 209 F--QGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSID-AL--S--MA---G----------F-CKSR---- 263 (473)
Q Consensus 209 l--~Gp~~~v~~acasg~~Al~~A~~~I~~G~~d~vlv~g~d~~~~-~~--~--~~---~----------~-~~~~---- 263 (473)
+ ..|.++++.+|+|++.|+.+|+++|++|++|+|||+|+|.++. +. . .. . + ...+
T Consensus 76 l~~~~p~~~v~~acaSg~~Av~~Aa~~I~sG~~d~vLv~G~e~ms~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 155 (382)
T PRK07801 76 LPEEVPGVTVDRQCGSSQQAIHFAAQAVMSGTQDLVVAGGVQNMSQIPISSAMTAGEQLGFTSPFAESKGWLHRYGDQEV 155 (382)
T ss_pred CCCCCceeeecchhhhHHHHHHHHHHHHHCCCCCEEEEcchhhhcCCcccccccccccccCCcccccCcchhhhccCCCC
Confidence 4 4588999999999999999999999999999999999996533 11 0 00 0 0 0000
Q ss_pred -------ccccccCCC------------------CC-----C-----------------------CCcCcc-----CCCC
Q 011989 264 -------ALTTKYNGT------------------PQ-----E-----------------------ASRPFD-----CGRD 285 (473)
Q Consensus 264 -------~~~~~~~~~------------------~~-----~-----------------------~~~pfd-----~~~~ 285 (473)
.+.++|+.+ +. . ..+|.. ...+
T Consensus 156 ~~~~~a~~~~~~yG~tre~~a~vav~~~~~a~~n~~ag~~~~~~~p~~~~~~d~~~~~~t~e~~~~~~~i~~~~pl~~~d 235 (382)
T PRK07801 156 SQFRGAELIAEKWGISREEMERFALESHRRAFAAIRAGRFDNEIVPVGGVTVDEGPRETSLEKMAGLKPLVEGGRLTAAV 235 (382)
T ss_pred CHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHcCCCccccccccCccccCCcCcCCHHHHhcCCCCCCCCCccccc
Confidence 000011000 00 0 001110 0122
Q ss_pred ceeeccceEEEEEccchHHHhcCCeEEEEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEEEEcCCCC
Q 011989 286 GFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYVNAHATST 365 (473)
Q Consensus 286 G~~~geGaaavvL~~~~~A~~~g~~~~a~i~g~~~~~d~~~~~~~~~~~~~~~~a~~~al~~agl~~~dId~v~~hgtgt 365 (473)
-..++|||+++||++++.|++++.+++++|.+++...+.. .....+...+++++|+++|++++|||++|+|
T Consensus 236 ~~~~~DGaaa~il~s~e~a~~~~~~~~~~i~~~~~~~~~~-----~~~~~~~~~a~~~a~~~agi~~~did~~e~~---- 306 (382)
T PRK07801 236 ASQISDGASAVLLASERAVKRHGLTPRARIHHLSVRGDDP-----VFMLTAPIPATRYALEKTGLSIDDIDVVEIN---- 306 (382)
T ss_pred CCCCCCceEEEEEecHHHHHHCCCCccEEEEEEEEecCCh-----HhhccChHHHHHHHHHHcCCCHHHcCEeeec----
Confidence 3337899999999999999999988889999987665321 1111223578999999999999999999999
Q ss_pred CCCCHHHHHHHHHHhhcccCC-CCceeecccc--chhhhHHhHHHHHHHHHHHHHHhCccCCCCCCCCCCCCCCCCCCcc
Q 011989 366 PLGDTVEATAIRTVFSDHATS-GSLAFSSTKG--AIGHLLGAAGAVEAIFAVLAIHHGVAPLTLNLAKPDPIFNDNFMPL 442 (473)
Q Consensus 366 ~~~D~~E~~a~~~~~~~~~~~-~~~~v~s~k~--~~Gh~~~AsG~~~li~~~~~l~~~~ipp~~~~~~~~~~~~~~~~~~ 442 (473)
|++++..+...+.++ -+-|+|...+ .+||+.+|+|+..++++++||+..
T Consensus 307 ------d~Fa~~~~~~~e~lG~~~~pvN~~GG~l~~Ghp~gasG~~~~~e~~~qL~~~---------------------- 358 (382)
T PRK07801 307 ------EAFAPVVLAWLKETGADPAKVNPNGGAIALGHPLGATGAKLMTTLLHELERT---------------------- 358 (382)
T ss_pred ------ccchHHHHHHHHHhCCCchhcCCCcchhhhcCcHHHHHHHHHHHHHHHHHhc----------------------
Confidence 888888777655433 1226666666 679999999999999999999861
Q ss_pred ccCCCCCCcEEEEeccccccceeeEEEee
Q 011989 443 TASKDMPISAALSNSFGFGGTNASLLFTK 471 (473)
Q Consensus 443 ~~~~~~~~~~~l~~s~g~gG~~~~~vl~~ 471 (473)
+.++.+.++.|.||+..++||++
T Consensus 359 ------~~~~gl~~~~gggg~~~~~vl~~ 381 (382)
T PRK07801 359 ------GGRYGLQTMCEGGGTANVTIIER 381 (382)
T ss_pred ------CCCEEEEEEcccccceeEEEEEe
Confidence 23578888999899999999986
|
|
| >TIGR02446 FadI fatty oxidation complex, beta subunit FadI | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.7e-23 Score=212.18 Aligned_cols=270 Identities=21% Similarity=0.262 Sum_probs=186.3
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCceeEEEecCCCChhhHHHHHHHHHHhccccCCCcchhhhhhhHHHHHHHHhcC
Q 011989 129 FIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYG 208 (473)
Q Consensus 129 ~~~la~~aa~~Al~dAgl~~~~~~~~~~~gvivg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lg 208 (473)
...|+.+++++||+|+|+++++++ .|++|+..+.. ....++..++...|
T Consensus 31 ~~~L~~~a~~~al~~agl~~~~Id-----~vi~G~~~~~~--------------------------~~~~~ar~~~l~aG 79 (430)
T TIGR02446 31 AVDLGKMVVSELLARSEIDPKLIE-----QLVFGQVVQMP--------------------------EAPNIAREIVLGTG 79 (430)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCC-----EEEEEeccCcC--------------------------ccchHHHHHHHhCC
Confidence 468999999999999999988887 78998743210 01224455666678
Q ss_pred CC-C-CeeeecCCcchHHHHHHHHHHHHHcCCCCEEEEeecCCCcChH-HHHH--------------Hh-----------
Q 011989 209 FQ-G-PNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDAL-SMAG--------------FC----------- 260 (473)
Q Consensus 209 l~-G-p~~~v~~acasg~~Al~~A~~~I~~G~~d~vlv~g~d~~~~~~-~~~~--------------~~----------- 260 (473)
+. + |.++|+.+|+||+.|+.+|+++|++|++|++||+|+|+++... .... +.
T Consensus 80 l~~~~p~~~V~~~CaSG~~A~~~a~~~I~sG~~dvvla~G~E~mS~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (430)
T TIGR02446 80 MNVHTDAYSVTRACATSFQSAVNVAESIMAGAIDIGIAGGADSSSVLPIGVSKKLAASLVDLNKARTLGQKLKVFSRLGL 159 (430)
T ss_pred CCCCCchhhhhhhhhHHHHHHHHHHHHHHCCCCCEEEEeeeEcccCCcccccccccccccccccccccCccccccccchh
Confidence 86 4 8999999999999999999999999999999999999986411 0000 00
Q ss_pred -----------------hhhc----cccccCC----------------------------------CCCCC-------Cc
Q 011989 261 -----------------KSRA----LTTKYNG----------------------------------TPQEA-------SR 278 (473)
Q Consensus 261 -----------------~~~~----~~~~~~~----------------------------------~~~~~-------~~ 278 (473)
.++. +..+++- .|... .|
T Consensus 160 ~~~~~~~~~~~~~~~~~~m~~~ae~~a~~ygisre~~d~~Avksh~~a~~A~~~g~~~~ei~p~~~np~a~~~~~D~~~r 239 (430)
T TIGR02446 160 KDLMPVPPAVAEYSTGLSMGQTAEQMAKTYGITRAEQDALAHRSHTLASQAWRDGKLAGEVMTAFPPPYKQWIAEDNNIR 239 (430)
T ss_pred hhhcccCcccccccCCCcHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHcCCCCceeeeeeecCCceEecccCCCC
Confidence 0000 0000000 00000 01
Q ss_pred ------------C-ccC------CCCceeeccceEEEEEccchHHHhcCCeEEEEEEEEEEecCCCCCCCCCCChHHHHH
Q 011989 279 ------------P-FDC------GRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAIL 339 (473)
Q Consensus 279 ------------p-fd~------~~~G~~~geGaaavvL~~~~~A~~~g~~~~a~i~g~~~~~d~~~~~~~~~~~~~~~~ 339 (473)
| |+. ..+...++|||+|+||.+++.|++.+.++.++|.+++....... .........
T Consensus 240 ~~~t~e~~~~~~~i~~p~~g~lt~~~~~~~~DGAaA~il~se~~A~~l~~~p~~~i~~~~~~~~~~~----~~~~~~~~~ 315 (430)
T TIGR02446 240 HNSTLAGYAKLRPAFDRKHGSVTAANSTPLTDGAAAVILMREGRAKELGMEPLGYIRSYAFTAIDVW----QDMLMGPSY 315 (430)
T ss_pred CCCCHHHHhcCCceecCCCCceechhcCCCCCceEEEEEecHHHHHHcCCCceEEEEEEEeeccCch----HhhcccHHH
Confidence 0 110 11222369999999999999999988888889999886632110 001223357
Q ss_pred HHHHHHHHcCCCCCCccEEEEcCCCCCCCCHHHHHHHHHHhhcccCC---------------CCc---eeecccc--chh
Q 011989 340 AMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATS---------------GSL---AFSSTKG--AIG 399 (473)
Q Consensus 340 a~~~al~~agl~~~dId~v~~hgtgt~~~D~~E~~a~~~~~~~~~~~---------------~~~---~v~s~k~--~~G 399 (473)
+++++|+++|++++|||++|+| |++++..+...+.++ +.+ |||...+ .+|
T Consensus 316 a~~~al~~Agl~~~Did~~Ei~----------daFa~~~l~~~e~lg~~~~~~~~~g~~~~~G~~~~~pvN~~GG~la~G 385 (430)
T TIGR02446 316 ATPLALQRAGLALSDLTLIDMH----------EAFAAQTLANVQMFASDKFAQENLGRSKAMGEIDMSKFNVLGGSIAYG 385 (430)
T ss_pred HHHHHHHHcCCCHHHCCEEEec----------cccHHHHHHHHHHhcCcchhhhcccccccCCCCCCCccCCCCCHHhcC
Confidence 8999999999999999999999 777777666443331 345 8888888 459
Q ss_pred hhHHhHHHHHHHHHHHHHHhCccCCCCCCCCCCCCCCCCCCccccCCCCCCcEEEEeccccccceeeEEEee
Q 011989 400 HLLGAAGAVEAIFAVLAIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPISAALSNSFGFGGTNASLLFTK 471 (473)
Q Consensus 400 h~~~AsG~~~li~~~~~l~~~~ipp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~g~gG~~~~~vl~~ 471 (473)
||.||+|+..++++++||+..- .++.+....+.||...++|+++
T Consensus 386 hP~gatG~~~v~e~~~qL~g~a----------------------------g~~g~~~~~~~GG~g~a~iie~ 429 (430)
T TIGR02446 386 HPFAATGARMITQTLRELKRRG----------------------------GGLGLNTACAAGGLGAAMILEV 429 (430)
T ss_pred CCccccHHHHHHHHHHHHhhcC----------------------------CCccEEEEEecCcceEEEEEEe
Confidence 9999999999999999998522 0122445556677778888875
|
This subunit of the FadJI complex has acetyl-CoA C-acyltransferase (EC 2.3.1.16) activity, and is also known as beta-ketothiolase and fatty oxidation complex, beta subunit, and YfcY. This protein is almost always located adjacent to FadJ (TIGR02440). The FadJI complex is needed for anaerobic beta-oxidation of short-chain fatty acids in E. coli. |
| >PRK09268 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=6e-22 Score=200.94 Aligned_cols=272 Identities=18% Similarity=0.195 Sum_probs=187.6
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCceeEEEecCCCChhhHHHHHHHHHHhccccCCCcchhhhhhhHHHHHHHHh--
Q 011989 129 FIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMK-- 206 (473)
Q Consensus 129 ~~~la~~aa~~Al~dAgl~~~~~~~~~~~gvivg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~-- 206 (473)
...|+.+|+++||+|+|+++.+++ .+++|+..+... + ..++..++..
T Consensus 31 ~~eL~~~a~~~al~~agl~~~~Id-----~vv~G~~~~~~~-----------------------~---~~~~r~~~l~~g 79 (427)
T PRK09268 31 NQDMLTAALDGLVDRFGLQGERLG-----EVVAGAVLKHSR-----------------------D---FNLTRECVLGSA 79 (427)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCC-----EEEEEecccCCc-----------------------c---ccHHHHHHHHcC
Confidence 367899999999999999988888 899987542100 0 0122233333
Q ss_pred cCCCCCeeeecCCcchHHHHHHHHHHHHHcCCCCEEEEeecCCCcChHHHHH-------------------------H--
Q 011989 207 YGFQGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAG-------------------------F-- 259 (473)
Q Consensus 207 lgl~Gp~~~v~~acasg~~Al~~A~~~I~~G~~d~vlv~g~d~~~~~~~~~~-------------------------~-- 259 (473)
++...|+++|+++|+||+.|+.+|+++|++|.+|++||+|+|.++....... +
T Consensus 80 l~~~~p~~~V~~~CaSG~~ai~~A~~~I~sG~~d~vlvgG~E~ms~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (427)
T PRK09268 80 LSPYTPAYDLQQACGTGLEAAILVANKIALGQIDSGIAGGVDTTSDAPIAVNEGLRKILLELNRAKTTGDRLKALGKLRP 159 (427)
T ss_pred CCCCCceeeeechhhHHHHHHHHHHHHHHCCCCCEEEEeeEEccCCCcccccccccccccccccccccCccccccccccc
Confidence 4445799999999999999999999999999999999999998764221000 0
Q ss_pred --------h--------hhhc----cccccCC-----------------------------CCC------CCC-------
Q 011989 260 --------C--------KSRA----LTTKYNG-----------------------------TPQ------EAS------- 277 (473)
Q Consensus 260 --------~--------~~~~----~~~~~~~-----------------------------~~~------~~~------- 277 (473)
. .++. +..+|+- .|. ...
T Consensus 160 ~~~~~~~~~~~~~~~~~~m~~~ae~~a~~ygisre~~d~~Avksh~~A~~A~~~g~~~~einP~~~~~~D~~~r~~~t~e 239 (427)
T PRK09268 160 KHLAPEIPRNGEPRTGLSMGEHAAITAKEWGISREAQDELAAASHQNLAAAYDRGFFDDLITPFLGLTRDNNLRPDSSLE 239 (427)
T ss_pred ccccccCccccccccCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccCccCcccCCCCCCCCCHH
Confidence 0 0000 0000100 111 011
Q ss_pred -----cC-ccCCCCcee-------eccceEEEEEccchHHHhcCCeEEEEE-EEEEEecCCCCCCCCCCChHHHHHHHHH
Q 011989 278 -----RP-FDCGRDGFV-------IGEGSGVLVLEELEHAKKRGAKIYAEV-RGYGMSGDAHHITQPHIDGKGAILAMTR 343 (473)
Q Consensus 278 -----~p-fd~~~~G~~-------~geGaaavvL~~~~~A~~~g~~~~a~i-~g~~~~~d~~~~~~~~~~~~~~~~a~~~ 343 (473)
+| |+...+|.+ ++|||+|+||.+++.|++.+.++..+| .+.....+... .+.........++++
T Consensus 240 ~l~~~~~v~~p~~~g~lt~~n~~~~~DGAaAvvl~s~~~A~~l~~~p~~~i~~~~~~~~~~~~--~~~~~~~~~~~a~~~ 317 (427)
T PRK09268 240 KLAKLKPVFGKGGRATMTAGNSTPLTDGASVVLLASEEWAAEHGLPVLAYLVDAETAAVDFVH--GKEGLLMAPAYAVPR 317 (427)
T ss_pred HHhCCCcccccCCCCceeccccCCCCCceEEEEEecHHHHHHcCCCceEEEEEEEEEcCCccc--ccchhhccHHHHHHH
Confidence 11 221112323 799999999999999999988886666 44454454321 111122344679999
Q ss_pred HHHHcCCCCCCccEEEEcCCCCCCCCHHHHHHHHHHhhc---ccC---------------CCCceeeccccc--hhhhHH
Q 011989 344 ALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSD---HAT---------------SGSLAFSSTKGA--IGHLLG 403 (473)
Q Consensus 344 al~~agl~~~dId~v~~hgtgt~~~D~~E~~a~~~~~~~---~~~---------------~~~~~v~s~k~~--~Gh~~~ 403 (473)
+|+++|++++|||++|+| |++++..+... +.+ -..+|||...+. +|||.+
T Consensus 318 a~~~AGl~~~Did~~Ei~----------d~Fa~~~l~~l~~~e~lG~~~~g~g~~~~~G~~~~~pvN~~GG~la~GhP~g 387 (427)
T PRK09268 318 LLARNGLTLQDFDFYEIH----------EAFASQVLATLKAWEDEEYCRERLGLDAPLGSIDRSKLNVNGSSLAAGHPFA 387 (427)
T ss_pred HHHHcCCCHHHCCEEEec----------cccHHHHHHHHHHhhhccccccccccccccCcCCCcccCCCcCHHhcCCCcc
Confidence 999999999999999999 88887743322 100 025788888884 499999
Q ss_pred hHHHHHHHHHHHHHHhCccCCCCCCCCCCCCCCCCCCccccCCCCCCcEEEEeccccccceeeEEEee
Q 011989 404 AAGAVEAIFAVLAIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPISAALSNSFGFGGTNASLLFTK 471 (473)
Q Consensus 404 AsG~~~li~~~~~l~~~~ipp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~g~gG~~~~~vl~~ 471 (473)
|+|+..++++++||+.+ ..++.|+....-||.-.++||++
T Consensus 388 ATG~~~v~e~~~QL~~~----------------------------~~~~gl~~~c~~gG~g~a~~~e~ 427 (427)
T PRK09268 388 ATGGRIVATLAKLLAEK----------------------------GSGRGLISICAAGGQGVTAILER 427 (427)
T ss_pred cchHHHHHHHHHHHHhc----------------------------CCCEEEEEEcccCchheEEEEeC
Confidence 99999999999999851 24689999999999999999985
|
|
| >PRK06025 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.3e-21 Score=195.17 Aligned_cols=269 Identities=20% Similarity=0.238 Sum_probs=191.7
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCCceeEEEecCCCChhhHHHHHHHHHHhccccCCCcchhhhhhhHHHHHHHHhcCC
Q 011989 130 IAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYGF 209 (473)
Q Consensus 130 ~~la~~aa~~Al~dAgl~~~~~~~~~~~gvivg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lgl 209 (473)
..|+..+.+++|+++|+++++++ .|++|+.... +.....++..++..-||
T Consensus 30 ~~L~~~~~~~~l~r~~i~~~~id-----~vi~G~~~~~-------------------------g~~g~n~aR~~al~agl 79 (417)
T PRK06025 30 QHLAATVLKALAERNGLNTADVD-----DIIWSTSSQR-------------------------GKQGGDLGRMAALDAGY 79 (417)
T ss_pred HHHHHHHHHHHHHhcCCCHHHCC-----EEEEEcCCCc-------------------------CcccCcHHHHHHHhCCC
Confidence 56778899999999999888887 7999975321 00012345556666677
Q ss_pred C--CCeeeecCCcchHHHHHHHHHHHHHcCCCCEEEEeecCCCcChHHH-H-----H-----Hhhh-hcccc--------
Q 011989 210 Q--GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSM-A-----G-----FCKS-RALTT-------- 267 (473)
Q Consensus 210 ~--Gp~~~v~~acasg~~Al~~A~~~I~~G~~d~vlv~g~d~~~~~~~~-~-----~-----~~~~-~~~~~-------- 267 (473)
. =|.+||+..|+||+.|+.+|++.|++|+.|++|++|+|+++..+.+ . . .... ..+..
T Consensus 80 p~~vp~~tvnr~C~Sgl~ai~~aa~~I~~G~~~~~laGG~EsmS~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Mg 159 (417)
T PRK06025 80 DIKASGVTLDRFCGGGITSVNLAAAQIMSGMEDLVIAGGTEMMSYTAAMAAEDMAAGKPPLGMGSGNLRLRALHPQSHQG 159 (417)
T ss_pred CCCCCeeeeccccchHHHHHHHHHHHHHcCCCCEEEEeeeeccCCCcccccccccCCCCcccccccCcccccccCCCCHH
Confidence 4 4999999999999999999999999999999999999998754321 0 0 0000 00000
Q ss_pred --------cc---------------------------CC--------------CCCCCCc------------C-ccC---
Q 011989 268 --------KY---------------------------NG--------------TPQEASR------------P-FDC--- 282 (473)
Q Consensus 268 --------~~---------------------------~~--------------~~~~~~~------------p-fd~--- 282 (473)
++ .. ..++..| | |+.
T Consensus 160 ~~ae~~a~~~~isRe~~D~~A~~Sh~rA~~A~~~G~f~~eIvPv~~~~~~~~~~~De~~R~~~t~e~la~L~p~F~~~~~ 239 (417)
T PRK06025 160 VCGDAIATMEGITREALDALGLESQRRAARAIKEGRFDKSLVPVYRDDGSVALDHEEFPRPQTTAEGLAALKPAFTAIAD 239 (417)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHcCCCcCeEeeEEcCCCCEEecCCCCCCCCCCHHHHcCCCCCcccccc
Confidence 00 00 0111111 1 321
Q ss_pred ---CCCce-------------------------eeccceEEEEEccchHHHhcCCeEEEEEEEEEEecCCCCCCCCCCCh
Q 011989 283 ---GRDGF-------------------------VIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDG 334 (473)
Q Consensus 283 ---~~~G~-------------------------~~geGaaavvL~~~~~A~~~g~~~~a~i~g~~~~~d~~~~~~~~~~~ 334 (473)
..+|. .++|||+|+||++++.|++++.+++++|.|++...+. |....
T Consensus 240 ~~~~~~g~~~~~~~~~~~~~~~~~~~vTagNss~~sDGAAAvVL~See~A~~lg~~p~a~I~g~~~a~~~-----p~~~~ 314 (417)
T PRK06025 240 YPLDDKGTTYRGLINQKYPDLEIKHVHHAGNSSGVVDGAAALLLASKAYAEKHGLKPRARIVAMANMGDD-----PTLML 314 (417)
T ss_pred ccccCCccccccccccccccccccccccccccCCCCcceEEEEEecHHHHHHcCCCCcEEEEEEEEecCC-----chhhc
Confidence 01343 2699999999999999999999999999999988643 22223
Q ss_pred HHHHHHHHHHHHHcCCCCCCccEEEEcCCCCCCCCHHHHHHHHHHhhcccCC---CCceeeccccchhhhHHhHHHHHHH
Q 011989 335 KGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATS---GSLAFSSTKGAIGHLLGAAGAVEAI 411 (473)
Q Consensus 335 ~~~~~a~~~al~~agl~~~dId~v~~hgtgt~~~D~~E~~a~~~~~~~~~~~---~~~~v~s~k~~~Gh~~~AsG~~~li 411 (473)
.+...+++++|+++|++++|||++|+| |+++...+...+.++ .++.++..+-.+||+.|++|+..++
T Consensus 315 ~~p~~Ai~~aL~~AGl~~~DID~~ei~----------eaFa~~~l~~~~~lg~~~~~vN~~GG~ia~GHp~GaTGa~~v~ 384 (417)
T PRK06025 315 NAPVPAAKKVLAKAGLTKDDIDLWEIN----------EAFAVVAEKFIRDLDLDRDKVNVNGGAIALGHPIGATGSILIG 384 (417)
T ss_pred ccHHHHHHHHHHHcCCCHHHCcEEEEc----------hHHHHHHHHHHHHcCCChhhccccCCHHhcCCchhHHHHHHHH
Confidence 344689999999999999999999999 888766544322221 2344444445899999999999999
Q ss_pred HHHHHHHhCccCCCCCCCCCCCCCCCCCCccccCCCCCCcEEEEeccccccceeeEEEee
Q 011989 412 FAVLAIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPISAALSNSFGFGGTNASLLFTK 471 (473)
Q Consensus 412 ~~~~~l~~~~ipp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~g~gG~~~~~vl~~ 471 (473)
.++.+|+.+ +.++.++...+.||.-.++|||+
T Consensus 385 ~ll~qL~~~----------------------------g~~~Gl~~~c~~GG~g~A~lle~ 416 (417)
T PRK06025 385 TVLDELERR----------------------------GLKRGLVTMCAAGGMAPAIIIER 416 (417)
T ss_pred HHHHHHHHh----------------------------CCCeEEEEEEeeccceeEEEEEe
Confidence 999999741 13466788888999999999986
|
|
| >PRK06690 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.7e-21 Score=191.40 Aligned_cols=263 Identities=22% Similarity=0.293 Sum_probs=189.7
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCCceeEEEecCCCChhhHHHHHHHHHHhccccCCCcchhhhhhhHHHHHHHHhcCC
Q 011989 130 IAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYGF 209 (473)
Q Consensus 130 ~~la~~aa~~Al~dAgl~~~~~~~~~~~gvivg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lgl 209 (473)
.+|+..+.++++ +|++ .+++ .|++|+..+.. ..++..++...|+
T Consensus 26 ~~L~~~a~~~~~--~gi~-~~Id-----~vi~G~~~~~~----------------------------~~~~r~~~~~~Gl 69 (361)
T PRK06690 26 QQLAAPLLTFLS--KGME-REID-----DVILGNVVGPG----------------------------GNVARLSALEAGL 69 (361)
T ss_pred HHHHHHHHHHHH--ccch-hhcC-----EEEEEecCCCc----------------------------chHHHHHHHHcCC
Confidence 678888888874 4885 6777 89998754220 1123346777888
Q ss_pred C-C-CeeeecCCcchHHHHHHHHHHHHHcCCCCEEEEeecCCCcChHHH--HHH-----h--hhhc----cccccCC---
Q 011989 210 Q-G-PNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSM--AGF-----C--KSRA----LTTKYNG--- 271 (473)
Q Consensus 210 ~-G-p~~~v~~acasg~~Al~~A~~~I~~G~~d~vlv~g~d~~~~~~~~--~~~-----~--~~~~----~~~~~~~--- 271 (473)
. + |+++|+++|+||+.|+..|+++|++|++|++||+|+|.++..... ..+ . .++. +.++|+-
T Consensus 70 ~~~~p~~tV~~~CaSG~~Ai~~a~~~I~sG~~d~~l~gG~E~ms~~p~~~~~~~~~~~~~~~~~~~~a~~~~~~ygitre 149 (361)
T PRK06690 70 GLHIPGVTIDRQCGAGLEAIRTACHFIQGGAGKCYIAGGVESTSTSPFQNRARFSPETIGDPDMGVAAEYVAERYNITRE 149 (361)
T ss_pred CCCCCceehhhhhhHHHHHHHHHHHHHHCCCCCEEEEeccccccCCCcccccccCcccccCccHHHHHHHHHHHhCCCHH
Confidence 6 5 999999999999999999999999999999999999988643210 000 0 0000 0000100
Q ss_pred ------------------CCC-------------CCC--------------cCccCCCCcee-------eccceEEEEEc
Q 011989 272 ------------------TPQ-------------EAS--------------RPFDCGRDGFV-------IGEGSGVLVLE 299 (473)
Q Consensus 272 ------------------~~~-------------~~~--------------~pfd~~~~G~~-------~geGaaavvL~ 299 (473)
.+. ... ..|+. +|.+ ++|||+++||.
T Consensus 150 ~~d~~A~~s~k~a~~a~~n~~~~~ei~~v~~~~d~~~r~~~~~e~ll~~l~p~~~~--~g~lt~~~~~~~~DGAaAvvl~ 227 (361)
T PRK06690 150 MQDEYACLSYKRTLQALEKGYIHEEILSFNGLLDESIKKEMNYERIIKRTKPAFLH--NGTVTAGNSCGVNDGACAVLVM 227 (361)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCceecccCccccccCCCCCHHHHhhcCCCcccC--CCceeccccCCCCCCeEEEEEe
Confidence 000 001 11211 2323 69999999999
Q ss_pred cchHHHhcCCeEEEEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEEEEcCCCCCCCCHHHHHHHHHH
Q 011989 300 ELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTV 379 (473)
Q Consensus 300 ~~~~A~~~g~~~~a~i~g~~~~~d~~~~~~~~~~~~~~~~a~~~al~~agl~~~dId~v~~hgtgt~~~D~~E~~a~~~~ 379 (473)
+++.|++++.++.++|.+++.... .+.....+...+++++|+++|++++|||++|+| |++++..+
T Consensus 228 s~e~A~~lg~~p~~~i~~~~~~~~-----~~~~~~~~~~~a~~~al~~Agl~~~Did~~ei~----------eafa~~~~ 292 (361)
T PRK06690 228 EEGQARKLGYKPVLRFVRSAVVGV-----DPNLPGTGPIFAVNKLLNEMNMKVEDIDYFEIN----------EAFASKVV 292 (361)
T ss_pred cHHHHHHcCCCceEEEEEEEEecc-----CcccchhHHHHHHHHHHHHcCCCHHHcCEeeec----------chhHHHHH
Confidence 999999999888888999887642 122334567889999999999999999999999 99999999
Q ss_pred hhcccCCC-Cceeecccc--chhhhHHhHHHHHHHHHHHHHHhCccCCCCCCCCCCCCCCCCCCccccCCCCCCcEEEEe
Q 011989 380 FSDHATSG-SLAFSSTKG--AIGHLLGAAGAVEAIFAVLAIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPISAALSN 456 (473)
Q Consensus 380 ~~~~~~~~-~~~v~s~k~--~~Gh~~~AsG~~~li~~~~~l~~~~ipp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 456 (473)
+..+.++. +-+++...+ .+||+.|++|+.+++.++.+|+.+ +.++.++.
T Consensus 293 ~~~e~lgl~~~~vn~~GG~la~Ghp~GatG~~~~~~~~~ql~~~----------------------------~~~~g~~~ 344 (361)
T PRK06690 293 ACAKELQIPYEKLNVNGGAIALGHPYGASGAMLVTRLFYQAKRE----------------------------DMKYGIAT 344 (361)
T ss_pred HHHHhcCCCchhcccCCcHHhccCchhhhHHHHHHHHHHHHHHh----------------------------CCCEEEEE
Confidence 87665432 224555544 669999999999999999999741 24678888
Q ss_pred ccccccceeeEEEeecC
Q 011989 457 SFGFGGTNASLLFTKCQ 473 (473)
Q Consensus 457 s~g~gG~~~~~vl~~~~ 473 (473)
...-||.-.++|+++-|
T Consensus 345 ~c~~gG~g~a~~~e~~~ 361 (361)
T PRK06690 345 LGIGGGIGLALLFEKVE 361 (361)
T ss_pred EcccCcceeEEEEEecC
Confidence 88889999999999854
|
|
| >PRK07515 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed | Back alignment and domain information |
|---|
Probab=99.88 E-value=2e-21 Score=195.42 Aligned_cols=253 Identities=17% Similarity=0.162 Sum_probs=169.3
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCCCCCCceeEEEecCCCChhhHHHHHHHHHHhccccCCCcchhhhhhhHHHHHHHHhc
Q 011989 128 RFIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKY 207 (473)
Q Consensus 128 ~~~~la~~aa~~Al~dAgl~~~~~~~~~~~gvivg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~l 207 (473)
....|+.+|+++||+++|+++.+++ .|+++++... ...+..+..++..|
T Consensus 94 ~~~~la~~Aa~~aL~~agl~~~~Id-----~li~~~~~~~--------------------------~~~p~~a~~v~~~L 142 (372)
T PRK07515 94 IQAEMGVAAARQALARAGRTAEDID-----AVIVACSNMQ--------------------------RAYPAMAIEIQQAL 142 (372)
T ss_pred hHHHHHHHHHHHHHHHcCCCHHHCC-----EEEEECCCCC--------------------------CCCcHHHHHHHHhc
Confidence 4568999999999999999888776 7777764311 01122456789999
Q ss_pred CCCCCeeeecCCcchHHHHHHHHHHHHHcCCCCEEEEeecCCCcChHHHHHHhhhhccccccCCCCCCCCcCccCCCCce
Q 011989 208 GFQGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDGF 287 (473)
Q Consensus 208 gl~Gp~~~v~~acasg~~Al~~A~~~I~~G~~d~vlv~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pfd~~~~G~ 287 (473)
|++++++++..+|+|++.||..|.++|++|.+|.|||+++|.+.... -|+....++
T Consensus 143 gl~~~~~~v~~aCasg~~al~~A~~~i~~g~~~~vLvv~~e~~s~~~------------------------~~~d~~~~~ 198 (372)
T PRK07515 143 GIEGFAFDMNVACSSATFGIQTAANAIRSGSARRVLVVNPEICSGHL------------------------NFRDRDSHF 198 (372)
T ss_pred CCCCcEEEecchhHHHHHHHHHHHHHHHcCCCCEEEEEeeecccccc------------------------cccCCCCCE
Confidence 99999999999999999999999999999999999999999743111 022233579
Q ss_pred eeccceEEEEEccchHHHhcC-CeEEEEEEEE------------EEecCCCCCCCCCC----ChH--------HHHHHHH
Q 011989 288 VIGEGSGVLVLEELEHAKKRG-AKIYAEVRGY------------GMSGDAHHITQPHI----DGK--------GAILAMT 342 (473)
Q Consensus 288 ~~geGaaavvL~~~~~A~~~g-~~~~a~i~g~------------~~~~d~~~~~~~~~----~~~--------~~~~a~~ 342 (473)
++||||+|+||++.+.+..++ ..++...... ....+..+...+.. .+. ....+++
T Consensus 199 lfGDgAaA~vL~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~ 278 (372)
T PRK07515 199 IFGDVATAVIVERADTATSAGGFEILGTRLFTQFSNNIRNNFGFLNRADPEGIGARDKLFVQEGRKVFKEVCPMVAEHIV 278 (372)
T ss_pred EecCccEEEEEeeccccccCCCceEEEEEeecccccceecCCCCCCCCCccccccccceEEeccHHHHHHHHHHHHHHHH
Confidence 999999999999876543222 2343332111 00001111111110 122 2467899
Q ss_pred HHHHHcCCCCCCccEEEEcCCCCCCCCHHHHHHHHHHhhcccCCCCceeeccccchhhhHHhHHHHHHHHHHHHHHhCcc
Q 011989 343 RALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLAIHHGVA 422 (473)
Q Consensus 343 ~al~~agl~~~dId~v~~hgtgt~~~D~~E~~a~~~~~~~~~~~~~~~v~s~k~~~Gh~~~AsG~~~li~~~~~l~~~~i 422 (473)
++|+++|++++|||||.+|.+++...|.+ ++++|+........+ .+-..+||+.+|+=.+.|-.+ ++ .+
T Consensus 279 ~~L~~~gl~~~dId~~~~Hq~~~~~~d~~----~~~llg~~~~~~~~~--~~~~~~GNt~sasi~~~L~~~----~~-~~ 347 (372)
T PRK07515 279 EHLAENGLTPADVKRFWLHQANINMNQLI----GKKVLGRDATPEEAP--VILDEYANTSSAGSIIAFHKH----SD-DL 347 (372)
T ss_pred HHHHHcCCCHHHCCEEEECCCCHHHHHHH----HHHhccCCCChhhce--EeHHhcCCchhhHHHHHHHHH----hc-cC
Confidence 99999999999999999999999987765 444455321111112 234688999888765544332 21 10
Q ss_pred CCCCCCCCCCCCCCCCCCccccCCCCCCcEEEEeccccccceeeEEEee
Q 011989 423 PLTLNLAKPDPIFNDNFMPLTASKDMPISAALSNSFGFGGTNASLLFTK 471 (473)
Q Consensus 423 pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~g~gG~~~~~vl~~ 471 (473)
.+-+.++..+||.|-+..++||+|
T Consensus 348 -------------------------~~Gd~vll~~~G~G~~~~~~ll~~ 371 (372)
T PRK07515 348 -------------------------AAGDLGVICSFGAGYSIGSVIVRK 371 (372)
T ss_pred -------------------------CCCCEEEEEEecccHHHHHHHhcc
Confidence 123456777888887777777765
|
|
| >COG0332 FabH 3-oxoacyl-[acyl-carrier-protein] | Back alignment and domain information |
|---|
Probab=99.87 E-value=7.8e-21 Score=182.68 Aligned_cols=244 Identities=22% Similarity=0.269 Sum_probs=163.8
Q ss_pred CHHHHHHHHHHHHHHHHcCCCCCCCCCCCceeEEEecCCCChhhHHHHHHHHHHhccccCCCcchhhhhhhHHHHHHHHh
Q 011989 127 ARFIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMK 206 (473)
Q Consensus 127 ~~~~~la~~aa~~Al~dAgl~~~~~~~~~~~gvivg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~ 206 (473)
.....|+.+|+++||++||++++|++ .||++|++ |.+..+..|..|+..
T Consensus 50 e~~s~la~~Aa~~AL~~Agi~~~dID-----lII~aT~t--------------------------pd~~~Ps~A~~vq~~ 98 (323)
T COG0332 50 ETTSDLAVEAARKALEDAGISPDDID-----LIIVATST--------------------------PDHLFPSTACLVQAR 98 (323)
T ss_pred ccHHHHHHHHHHHHHHHcCCCHHHCC-----EEEEEcCC--------------------------cccCCChHHHHHHHH
Confidence 34678999999999999999999888 88888865 233357788899999
Q ss_pred cCCCC-CeeeecCCcchHHHHHHHHHHHHHcCCCCEEEEeecCCCcChHHHHHHhhhhccccccCCCCCCCCcCccCCCC
Q 011989 207 YGFQG-PNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRD 285 (473)
Q Consensus 207 lgl~G-p~~~v~~acasg~~Al~~A~~~I~~G~~d~vlv~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pfd~~~~ 285 (473)
||+++ +++.+..+|++.+.||..|..+|++|.++.+||+|.|.++.... |+.+..
T Consensus 99 LG~~~~~afDl~aaCsgf~yaL~~A~~~i~sG~~k~vLVVg~e~~S~~ld------------------------~~dR~t 154 (323)
T COG0332 99 LGLGGAPAFDLQAACSGFLYALSVADGLIRSGGYKNVLVVGAETLSRILD------------------------WTDRDT 154 (323)
T ss_pred hCCCCcceeechhhhHHHHHHHHHHHHHHHcCCCCEEEEEehhHhhccCC------------------------Hhhccc
Confidence 99998 99999999999999999999999999999999999998532221 334567
Q ss_pred ceeeccceEEEEEccchHHHhcCCeEEEEEEEEEEecCCCCC-------C------------CCCCCh--------HHHH
Q 011989 286 GFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHI-------T------------QPHIDG--------KGAI 338 (473)
Q Consensus 286 G~~~geGaaavvL~~~~~A~~~g~~~~a~i~g~~~~~d~~~~-------~------------~~~~~~--------~~~~ 338 (473)
.+++||||+||||+..+ .+.+ |......+|+... . .....+ ....
T Consensus 155 ~vlFgDGAgAvvl~~~~--~~~~------i~~~~l~sdg~~~~~l~~~~~~~~~~~~~~~~~~~~m~Gr~vfk~av~~~~ 226 (323)
T COG0332 155 CVLFGDGAGAVVLEATE--DDNG------ILDTDLGSDGSQGDLLYLPGGGSATPKEESGGGLLVMDGREVFKFAVRAMP 226 (323)
T ss_pred eEEEcCCceEEEEecCC--CCcC------eeeeeeeccccCCCeeeccCCCCccccccccccceeeccHHHHHHHHHHHH
Confidence 88999999999999876 1111 2222222222110 0 000111 2345
Q ss_pred HHHHHHHHHcCCCCCCccEEEEcCCCCCCCCHHHHHHHHHHhhcccCCCCceeeccccchhhhHHhHHHHHHHHHHHHHH
Q 011989 339 LAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLAIH 418 (473)
Q Consensus 339 ~a~~~al~~agl~~~dId~v~~hgtgt~~~D~~E~~a~~~~~~~~~~~~~~~v~s~k~~~Gh~~~AsG~~~li~~~~~l~ 418 (473)
.+++++|++++++++|||++.+| +.|-.+- .++.+.++.. .-.+...-..+|++.+||=.+.|.+ .++
T Consensus 227 ~~~~~~L~~~~l~~~dId~~vpH----Qan~ri~-~~i~~~l~~~----~~k~~~~~~~yGNtsaAsiplaL~~---~~~ 294 (323)
T COG0332 227 KAIEEVLEKAGLTPEDIDWFVPH----QANLRII-EAIAKKLGIP----EEKVVVTVDKYGNTSAASIPLALDE---ALR 294 (323)
T ss_pred HHHHHHHHHcCCCHHHCCEEccc----cccHHHH-HHHHHHcCCC----HHHHhhHHHHhcccccchHHHHHHH---Hhh
Confidence 78999999999999999999999 3322221 1222222211 1122233346677777765544433 334
Q ss_pred hCccCCCCCCCCCCCCCCCCCCccccCCCCCCcEEEEeccccccceeeEEEe
Q 011989 419 HGVAPLTLNLAKPDPIFNDNFMPLTASKDMPISAALSNSFGFGGTNASLLFT 470 (473)
Q Consensus 419 ~~~ipp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~g~gG~~~~~vl~ 470 (473)
.|.|. +-...+...||-|=+-.+++++
T Consensus 295 ~g~ik-------------------------~Gd~ill~~fG~Gltwg~~~~r 321 (323)
T COG0332 295 EGRIK-------------------------PGDLVLLEAFGGGLTWGAALVR 321 (323)
T ss_pred hCCCC-------------------------CCCEEEEEeecCcceeeeEEEE
Confidence 44321 2245666677776666666665
|
|
| >KOG1390 consensus Acetyl-CoA acetyltransferase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.9e-22 Score=183.65 Aligned_cols=246 Identities=27% Similarity=0.328 Sum_probs=172.3
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCCCCCCceeEEEecCCCChhhHHHHHHHHHHhccccCCCcchhhhhhhHHHHHHHHhc
Q 011989 128 RFIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKY 207 (473)
Q Consensus 128 ~~~~la~~aa~~Al~dAgl~~~~~~~~~~~gvivg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~l 207 (473)
+.++|+..|++.||+.+.+.+.++. -||+|.... ..+.-.++.+.+.--
T Consensus 29 ~A~~Lgsvaikaalera~v~~~~v~-----eVi~GnVl~--------------------------AnlGQapaRQaalgA 77 (396)
T KOG1390|consen 29 TATELGSVAIKAALERAVVPPSDVA-----EVIFGNVLS--------------------------ANLGQAPARQAALGA 77 (396)
T ss_pred chhhHHHHHHHHHHHhcCCCHHHhh-----hhhhccccc--------------------------cccCcchHHHHHhhc
Confidence 4578889999999999998776554 466665221 111223444555555
Q ss_pred CCC--CCeeeecCCcchHHHHHHHHHHHHHcCCCCEEEEeecCCCcChHHHHHHhh---hh-----------ccccccCC
Q 011989 208 GFQ--GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCK---SR-----------ALTTKYNG 271 (473)
Q Consensus 208 gl~--Gp~~~v~~acasg~~Al~~A~~~I~~G~~d~vlv~g~d~~~~~~~~~~~~~---~~-----------~~~~~~~~ 271 (473)
||. -++.|++--|+||+.|+.+|++.|+.|..|+++++|.|+|+..+.+..... .+ .+.+.|+.
T Consensus 78 Glp~sv~~tTvNkvCaSgmKAv~laaQsI~~G~~divVaGGmEsMS~vP~~~~~R~g~~~G~~~l~Dgi~~DGL~D~y~~ 157 (396)
T KOG1390|consen 78 GLPYSVPATTVNKVCASGMKAVILAAQSIQTGHADIVVAGGMESMSNVPYLYVARGGVKYGGVQLVDGIVKDGLTDAYDK 157 (396)
T ss_pred CCCcceeeEeehhhhhhhHHHHHHHHHHHhcCCccEEEecccchhccCcchhhhccCcCcCCeeeeechhhcchHHHhcc
Confidence 553 388999999999999999999999999999999999999876551111000 00 00000000
Q ss_pred -----------------------------------------------------------CCCC------------CCcCc
Q 011989 272 -----------------------------------------------------------TPQE------------ASRPF 280 (473)
Q Consensus 272 -----------------------------------------------------------~~~~------------~~~pf 280 (473)
..++ ..+|.
T Consensus 158 ~~MG~~aE~~a~~~~ItRe~QD~yAI~Sy~r~~~Aq~~g~f~~EIVPV~V~~~rg~~~v~~DEe~~k~~~~~~~~~l~~v 237 (396)
T KOG1390|consen 158 CHMGICAENTAKKYQITREEQDAYAIESYKRSENAQKAGKFDKEIVPVEVKTKRGETVVKKDEEPKKGSNIEKLSKLRPV 237 (396)
T ss_pred CCcchhHhhhHHHhCCcHhhhhhHHHHhHHHHHHHHhcCCCCCceeeEEEecCCCcEEeccchhhhcccchhhhccccce
Confidence 0000 01111
Q ss_pred cCCCCcee-------eccceEEEEEccchHHHhcCCeEEEEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHHcCCCCC
Q 011989 281 DCGRDGFV-------IGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSH 353 (473)
Q Consensus 281 d~~~~G~~-------~geGaaavvL~~~~~A~~~g~~~~a~i~g~~~~~d~~~~~~~~~~~~~~~~a~~~al~~agl~~~ 353 (473)
-....|.+ +.|||+|+||.+.+.+.+.|.+|+++|.+|+.+. ..|.....+...++.++|+++|+..+
T Consensus 238 F~~~ggTVTaaNAS~lnDGAAAvvL~s~e~~~~~glkPLArIv~~~dAa-----~~P~df~iaP~laipk~lk~aG~~~s 312 (396)
T KOG1390|consen 238 FKEDGGTVTAANASTLNDGAAAVVLMSGEAAKELGLKPLARIVAWGDAA-----TEPIDFTIAPALAIPKALKKAGLEQS 312 (396)
T ss_pred eecCCCeeccccccccCccceeeEEechhhHhHcCCchHHHHhhhhhhc-----cChhhcccchHHHHHHHHHHcCcchh
Confidence 11122222 7999999999999999999999999999998754 23433344557899999999999999
Q ss_pred CccEEEEcCCCCCCCCHHHHHHHHHHhhcccCCCCceeecccc---chhhhHHhHHHHHHHHHHHHHHh
Q 011989 354 QVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKG---AIGHLLGAAGAVEAIFAVLAIHH 419 (473)
Q Consensus 354 dId~v~~hgtgt~~~D~~E~~a~~~~~~~~~~~~~~~v~s~k~---~~Gh~~~AsG~~~li~~~~~l~~ 419 (473)
||||+|++ |+|+...+...+.++......++.+ .+|||+|+||..-+...++.|+.
T Consensus 313 dVd~~EiN----------EAFs~v~lA~iK~LgldP~kVNv~GGAValGHPlG~SGaRi~~tL~~~L~~ 371 (396)
T KOG1390|consen 313 DVDYWEIN----------EAFSVVVLANIKKLGLDPSKVNVHGGAVALGHPLGMSGARILVTLLHTLEQ 371 (396)
T ss_pred hhhHHhhh----------hhhhHHHHHHHHHhCCCHhhccCCCceeecCCCcCCcchhHHHHHHHHHHh
Confidence 99999999 9998877765555443333333333 89999999999999999999875
|
|
| >PRK07937 lipid-transfer protein; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.8e-20 Score=182.26 Aligned_cols=265 Identities=17% Similarity=0.113 Sum_probs=173.8
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCceeEEEecCCCChhhHHHHHHHHHHhccccCCCcchhhhhhhHHHHHHHHhcC
Q 011989 129 FIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYG 208 (473)
Q Consensus 129 ~~~la~~aa~~Al~dAgl~~~~~~~~~~~gvivg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lg 208 (473)
...|+.+|+++||+|||+++.|++ +++.+.. +. + ....... ..+...+|
T Consensus 24 ~~el~~eA~~~Al~DAgl~~~dID-----~~~~~~~-~~------------------~-----~~~~~~~--~~~~~~~G 72 (352)
T PRK07937 24 GVEMLMPCFAELYAELGITKSDIG-----FWCSGSS-DY------------------L-----AGRAFSF--ISAIDSIG 72 (352)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCC-----EEEEEcc-cc------------------c-----cccccch--hhHHhhcc
Confidence 368999999999999999998887 6654321 00 0 0000000 12344566
Q ss_pred CC-C-CeeeecCCcchHHHHHHHHHHHHHcCCCCEEEEeecCCCcChHH----------------------HHHHhhhhc
Q 011989 209 FQ-G-PNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALS----------------------MAGFCKSRA 264 (473)
Q Consensus 209 l~-G-p~~~v~~acasg~~Al~~A~~~I~~G~~d~vlv~g~d~~~~~~~----------------------~~~~~~~~~ 264 (473)
+. + |...++ ++|..||..|+.+|++|.+|+|||+|.|++..... +..+...+.
T Consensus 73 ~~~~~~~~~v~---~~g~~a~~~A~~aI~sG~~d~VLv~g~~k~~~~~~~~~~~~~~~~~~~~p~G~~~~~~~Al~a~~y 149 (352)
T PRK07937 73 AVPPINESHVE---MDAAWALYEAWVKLLTGEVDTALVYGFGKSSAGTLRRVLALQLDPYTVAPLWPDSVSMAGLQARAG 149 (352)
T ss_pred CCCCCceEEec---CcHHHHHHHHHHHHhcCCCCEEEEEEecccCccchhhhhhccCCcceeccCCCchHHHHHHHHHHH
Confidence 63 3 455555 36888999999999999999999999986531000 000000011
Q ss_pred cccccC------------------CCCCCCCc--------------CccCCCCceeeccceEEEEEccchHHHhcCCeEE
Q 011989 265 LTTKYN------------------GTPQEASR--------------PFDCGRDGFVIGEGSGVLVLEELEHAKKRGAKIY 312 (473)
Q Consensus 265 ~~~~~~------------------~~~~~~~~--------------pfd~~~~G~~~geGaaavvL~~~~~A~~~g~~~~ 312 (473)
+. +++ ..|....+ |+. ..+-..++|||+|+||.+++.|++.+.++
T Consensus 150 m~-~yG~t~e~lA~vavk~r~nA~~NP~A~~rit~edvl~s~~ia~PL~-l~d~~~~~DGAaA~vl~s~~~A~~l~~~p- 226 (352)
T PRK07937 150 LD-AGKWTEEQMAEVAARSRADARRNPSAEPSISVDELLARPYFADPLR-RHDIAPITDGAAAVVLAAGDRARELRERP- 226 (352)
T ss_pred HH-HhCCCHHHHHHHHHHHHHHHhhCchhhccCCHHHHhcCCcccCCch-hhcCCCCCCcceEEEEecHHHHHHcCCCc-
Confidence 10 000 01111111 110 11222379999999999999999988777
Q ss_pred EEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHH-cCCCCCCccEEEEcCCCCCCCCHHHHHHHHHHhhcccCC--CCc
Q 011989 313 AEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQ-SGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATS--GSL 389 (473)
Q Consensus 313 a~i~g~~~~~d~~~~~~~~~~~~~~~~a~~~al~~-agl~~~dId~v~~hgtgt~~~D~~E~~a~~~~~~~~~~~--~~~ 389 (473)
++|.|++...+.......+.. ...++++++++ +|++|+|||++|+| |++++..+...+.++ +.+
T Consensus 227 v~I~g~~~~~~~~~~~~~d~~---~~~~~~~a~~~aAgi~~~diD~~Ei~----------D~F~~~~l~~~e~lGl~g~~ 293 (352)
T PRK07937 227 AWITGIEHRIESPSLGARDLT---RSPSTALAAEAATGGDAGGVDVAELH----------APFTHQELILREALGLGDKT 293 (352)
T ss_pred EEEEEEEEeeCCccccccccc---cHHHHHHHHHHhcCCCHHHCCEEEEe----------CCChHHHHHHHHHcCCCCCC
Confidence 899999987765433222222 13344556666 59999999999999 888888777666544 568
Q ss_pred eeeccccch-hhhHHhHHHHHHHHHHHHHHhCccCCCCCCCCCCCCCCCCCCccccCCCCCCcEEEEecccc--ccceee
Q 011989 390 AFSSTKGAI-GHLLGAAGAVEAIFAVLAIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPISAALSNSFGF--GGTNAS 466 (473)
Q Consensus 390 ~v~s~k~~~-Gh~~~AsG~~~li~~~~~l~~~~ipp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~g~--gG~~~~ 466 (473)
|+|...+.+ ||+.||+|+..++++++||+++ ..+++|+++.|. +.+++.
T Consensus 294 pvN~~GG~l~ghp~gatG~~~~~e~~~QL~g~----------------------------~a~~~l~~~~Gg~~~~~~~v 345 (352)
T PRK07937 294 KVNPSGGALAANPMFAAGLERIGEAARHIWDG----------------------------SARRALAHATSGPALQQNLV 345 (352)
T ss_pred CcCCCccchhcCchhHHHHHHHHHHHHHHhcc----------------------------CCCEEEEecccccccceEEE
Confidence 998888822 9999999999999999999863 256788887774 355666
Q ss_pred EEEee
Q 011989 467 LLFTK 471 (473)
Q Consensus 467 ~vl~~ 471 (473)
+||++
T Consensus 346 ~v~~~ 350 (352)
T PRK07937 346 AVLEG 350 (352)
T ss_pred EEEec
Confidence 66664
|
|
| >PRK07855 lipid-transfer protein; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.4e-19 Score=181.77 Aligned_cols=267 Identities=18% Similarity=0.134 Sum_probs=174.7
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCceeEEEecCCCChhhHHHHHHHHHHhccccCCCcchhhhhhhHHHHHHHHhcC
Q 011989 129 FIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYG 208 (473)
Q Consensus 129 ~~~la~~aa~~Al~dAgl~~~~~~~~~~~gvivg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lg 208 (473)
...|+.+|+++||+|||+++++++ ++++++.. . .. ...++..+|
T Consensus 24 ~~~L~~eA~~~Al~DAgl~~~dID-----~~~~~~~~-~-----------------------~~-------~~~l~~~lG 67 (386)
T PRK07855 24 ELRLACEAVLAALDDAGLAPSDVD-----GLVTFTMD-T-----------------------NP-------EIAVARALG 67 (386)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCC-----EEEEecCc-c-----------------------cc-------HHHHHHHCC
Confidence 357999999999999999888887 77653310 0 00 024788899
Q ss_pred CCC--CeeeecCCcchHHHHHHHHHHHHHcCCCCEEEEeec--CCCcChH------------------------------
Q 011989 209 FQG--PNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGT--ESSIDAL------------------------------ 254 (473)
Q Consensus 209 l~G--p~~~v~~acasg~~Al~~A~~~I~~G~~d~vlv~g~--d~~~~~~------------------------------ 254 (473)
+++ +...+..+|+++..+|..|+..|++|.+|+|||++. +......
T Consensus 68 l~~~~~~~~v~~gg~sg~~~~~~A~~~I~sG~~d~vLv~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 147 (386)
T PRK07855 68 IGELKFFSRIHYGGGAACATVQQAAMAVATGVADVVVCYRAFNERSGMRFGQGQTGLAENPTSTGVDYGWSYPHGLLTPA 147 (386)
T ss_pred CCCCcceeeecCCcHHHHHHHHHHHHHHHCCCCCEEEEEeecccccccccccccccccccccccccchhhhhhcCCCChH
Confidence 976 445789999999999999999999999999999987 2210000
Q ss_pred HHHHHhhhhccccccC------------------CCCCCCC--cCccC--------------CCCceeeccceEEEEEcc
Q 011989 255 SMAGFCKSRALTTKYN------------------GTPQEAS--RPFDC--------------GRDGFVIGEGSGVLVLEE 300 (473)
Q Consensus 255 ~~~~~~~~~~~~~~~~------------------~~~~~~~--~pfd~--------------~~~G~~~geGaaavvL~~ 300 (473)
.+..+.....+. +++ ..|.... +|++. .-+-..++|||+|+||.+
T Consensus 148 ~~~al~a~~ym~-~~G~t~e~lA~vavk~~~~A~~NP~A~~~~~~~t~e~vl~s~~Ia~Pl~~~d~~~~sDGAaAvvl~s 226 (386)
T PRK07855 148 AWVAMLARRYMH-EYGATSEDFGRVAVADRKHAATNPKAWFYGRPITLEDHQNSRWIAEPLRLLDCCQESDGAVALVVTS 226 (386)
T ss_pred HHHHHHHHHHHH-HHCCCHHHHHHHHHHHHHHHhcChHhhhcCCCCCHHHHhcCCcccCCchhhhcCCcCCceEEEEEec
Confidence 000000000000 000 0121111 12220 022333799999999999
Q ss_pred chHHHhcCCeEEEEEEEEEEecCCCCCC-----CCCCC-hHHHHHHHHHHHHHcCCCCCCccEEEEcCCCCCCCCHHHHH
Q 011989 301 LEHAKKRGAKIYAEVRGYGMSGDAHHIT-----QPHID-GKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEAT 374 (473)
Q Consensus 301 ~~~A~~~g~~~~a~i~g~~~~~d~~~~~-----~~~~~-~~~~~~a~~~al~~agl~~~dId~v~~hgtgt~~~D~~E~~ 374 (473)
++.|++.+.++ ++|.|++..++..... .++.. ......+++++|+++|++++|||++|+| |++
T Consensus 227 ee~A~~l~~~p-v~I~g~~~~~~~~~~~~~~~~~~d~~~~~~~~~aa~~a~~~AGi~~~DiDv~El~----------D~F 295 (386)
T PRK07855 227 AERARDLKQRP-AVIKAAAQGSGADQYMMTSYYRDDITGLPEMGLVARQLWAQSGLGPADIDTAILY----------DHF 295 (386)
T ss_pred HHHHhhCCCCC-EEEEEEEEecCCccccccccccccccccchHHHHHHHHHHHcCCCHHHCcEEEec----------cCC
Confidence 99999887766 6999998866433111 11211 2334579999999999999999999999 554
Q ss_pred HHHHHhhccc-------------------CCCCceeeccccch--hhhHHhHHHHHHHHHHHHHHhCccCCCCCCCCCCC
Q 011989 375 AIRTVFSDHA-------------------TSGSLAFSSTKGAI--GHLLGAAGAVEAIFAVLAIHHGVAPLTLNLAKPDP 433 (473)
Q Consensus 375 a~~~~~~~~~-------------------~~~~~~v~s~k~~~--Gh~~~AsG~~~li~~~~~l~~~~ipp~~~~~~~~~ 433 (473)
++..+...+. .++.+|||...+.+ ||+. |+.+++++++||+...
T Consensus 296 t~~~l~~~E~lG~~~~Ge~~~~v~~G~~~~~G~lPvN~sGGll~~gh~~---G~~~i~E~~~QLrG~a------------ 360 (386)
T PRK07855 296 TPFVLMQLEELGFCGRGEAKDFIADGALELGGRLPINTHGGQLGEAYIH---GMNGIAEAVRQLRGTS------------ 360 (386)
T ss_pred cHHHHHHHHHcCCCCCCcHHHHHHCCCcccCCcccccCCCcccccCchh---hHHHHHHHHHHHhCCC------------
Confidence 4444442211 23678998888854 7866 8999999999999742
Q ss_pred CCCCCCCccccCCCCCCcEEEEeccccccceeeEEE
Q 011989 434 IFNDNFMPLTASKDMPISAALSNSFGFGGTNASLLF 469 (473)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~l~~s~g~gG~~~~~vl 469 (473)
. .|..+.+.+|+++.|-. ..+++||
T Consensus 361 ---------~-~QV~~a~~gl~~~~Gg~-~~~~~~~ 385 (386)
T PRK07855 361 ---------V-NQVPGVENVLVTAGTGV-PTSGLIL 385 (386)
T ss_pred ---------c-ccCCCCcEEEEECCCCc-cceeEEe
Confidence 1 13335678888876633 3355665
|
|
| >PRK07204 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed | Back alignment and domain information |
|---|
Probab=99.85 E-value=7.4e-20 Score=181.36 Aligned_cols=247 Identities=19% Similarity=0.233 Sum_probs=167.3
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCCCCCCceeEEEecCCCChhhHHHHHHHHHHhccccCCCcchhhhhhhHHHHHHHHhc
Q 011989 128 RFIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKY 207 (473)
Q Consensus 128 ~~~~la~~aa~~Al~dAgl~~~~~~~~~~~gvivg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~l 207 (473)
....|+.+|+++||+++|+++++++ .+++++..+. ...+..+.+|+..+
T Consensus 51 ~~~~la~~Aa~~aL~~ag~~~~dId-----~li~~~~~~~--------------------------~~~p~~a~~v~~~l 99 (329)
T PRK07204 51 TSSYMGAEAAKKAVEDAKLTLDDID-----CIICASGTIQ--------------------------QAIPCTASLIQEQL 99 (329)
T ss_pred CHHHHHHHHHHHHHHHcCCCHHHCC-----EEEEECCCCC--------------------------CCCccHHHHHHHHh
Confidence 3578999999999999999888876 6777764421 11235567899999
Q ss_pred CCCC---CeeeecCCcchHHHHHHHHHHHHHcCCCCEEEEeecCCCcChHHHHHHhhhhccccccCCCCCCCCcCccCCC
Q 011989 208 GFQG---PNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGR 284 (473)
Q Consensus 208 gl~G---p~~~v~~acasg~~Al~~A~~~I~~G~~d~vlv~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pfd~~~ 284 (473)
|+++ +++.++.+|++++.||..|.++|++|.++.+||+++|.+.... .++...
T Consensus 100 gl~~~~~~~~~v~~~C~~~~~al~~a~~~l~~g~~~~~Lvv~~e~~s~~~------------------------~~~~~~ 155 (329)
T PRK07204 100 GLQHSGIPCFDINSTCLSFITALDTISYAIECGRYKRVLIISSEISSVGL------------------------NWGQNE 155 (329)
T ss_pred CCCCCCceEEEccchhHHHHHHHHHHHHHHHCCCCCEEEEEEeccccCCC------------------------CcccCc
Confidence 9975 7899999999999999999999999999999999999742211 122234
Q ss_pred CceeeccceEEEEEccchHHHhcCCeEE-------------EEEEEEEEecCCCCCCCCC-------CCh--------HH
Q 011989 285 DGFVIGEGSGVLVLEELEHAKKRGAKIY-------------AEVRGYGMSGDAHHITQPH-------IDG--------KG 336 (473)
Q Consensus 285 ~G~~~geGaaavvL~~~~~A~~~g~~~~-------------a~i~g~~~~~d~~~~~~~~-------~~~--------~~ 336 (473)
+++++||||+|+||++.+.. ..+. .++.+.+...+......+. ..+ ..
T Consensus 156 ~~~lfGDGAaA~ll~~~~~~----~~il~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (329)
T PRK07204 156 SCILFGDGAAAVVITKGDHS----SRILASHMETYSSGAHLSEIRGGGTMIHPREYSEERKEDFLFDMNGRAIFKLSSKY 231 (329)
T ss_pred ceEEEecccEEEEEEEcCCC----CcEEEEEEEEecCCCCceEEecCCcCCCCcccccccccCceEEECCHHHHHHHHHH
Confidence 57889999999999975431 1111 1122111111110000000 011 12
Q ss_pred HHHHHHHHHHHcCCCCCCccEEEEcCCCCCCCCHHHHHHHHHHhhcccCCCCceeeccccchhhhHHhHHHHHHHHHHHH
Q 011989 337 AILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLA 416 (473)
Q Consensus 337 ~~~a~~~al~~agl~~~dId~v~~hgtgt~~~D~~E~~a~~~~~~~~~~~~~~~v~s~k~~~Gh~~~AsG~~~li~~~~~ 416 (473)
..++++++|+++|++++|||++.+|..+.+. ..++.+.++... -.+......+||+.+|+=.+.|..+
T Consensus 232 ~~~~i~~~L~~~gl~~~did~~~~H~~~~~~-----~~~i~~~l~l~~----e~~~~~~~~~Gn~~sas~~~~L~~~--- 299 (329)
T PRK07204 232 LMKFIDKLLMDAGYTLADIDLIVPHQASGPA-----MRLIRKKLGVDE----ERFVTIFEDHGNMIAASIPVALFEA--- 299 (329)
T ss_pred HHHHHHHHHHHcCCCHHHCCEEEeCCCCHHH-----HHHHHHHcCCCH----HHhhhhHhhhCcHHHHHHHHHHHHH---
Confidence 4478999999999999999999999776654 335555555432 1133566788999977765555433
Q ss_pred HHhCccCCCCCCCCCCCCCCCCCCccccCCCCCCcEEEEeccccccceeeEEEe
Q 011989 417 IHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPISAALSNSFGFGGTNASLLFT 470 (473)
Q Consensus 417 l~~~~ipp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~g~gG~~~~~vl~ 470 (473)
++.+.+ .+-..++..+||.|-+..+++|+
T Consensus 300 ~~~g~~-------------------------~~Gd~vll~~~G~G~s~~~~ll~ 328 (329)
T PRK07204 300 IKQKKV-------------------------QRGNKILLLGTSAGLSIGGILLE 328 (329)
T ss_pred HHcCCC-------------------------CCCCEEEEEEEchhhhheeeEEe
Confidence 343321 12356777799999998888886
|
|
| >PRK08257 acetyl-CoA acetyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.7e-19 Score=186.26 Aligned_cols=249 Identities=15% Similarity=0.125 Sum_probs=168.5
Q ss_pred HHHHHHHHHHHHHHHcCCC--CCCCCCCCceeEEEecCCCChhhHHHHHHHHHHhccccCCCcchhhhhhhHHHHHHHHh
Q 011989 129 FIAYALCAADEALHDAKWL--PSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMK 206 (473)
Q Consensus 129 ~~~la~~aa~~Al~dAgl~--~~~~~~~~~~gvivg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~ 206 (473)
...|+.+|+++||+|||++ +.+++ +++++..... . .+.....++..
T Consensus 27 ~~~L~~eA~~~Al~DAGl~~~~~dID-----~v~v~~~~~~------------------------~---~~~~~~~la~~ 74 (498)
T PRK08257 27 PVDLMAAAARAAAADAGADAVLEAID-----SVAVVNQLSW------------------------R---YRDPPGLLAER 74 (498)
T ss_pred HHHHHHHHHHHHHHhcCCCcCHHHCC-----EEEEeccccc------------------------c---ccCHHHHHHHH
Confidence 3679999999999999998 88887 7777653210 0 11223578889
Q ss_pred cCCCC-CeeeecCCcchHHHHHHHHHHHHHcCCCCEEEEeecCCCcChHHHH----------------------------
Q 011989 207 YGFQG-PNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMA---------------------------- 257 (473)
Q Consensus 207 lgl~G-p~~~v~~acasg~~Al~~A~~~I~~G~~d~vlv~g~d~~~~~~~~~---------------------------- 257 (473)
+|++. +......+|+++..+|..|++.|++|++|+|||+|+|.+.+.....
T Consensus 75 lGl~p~~~~~~~~GG~s~~~~v~~Aa~~IasG~advVLv~G~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (498)
T PRK08257 75 LGADPARTVYSPVGGNSPQRLVNEAALRIAAGEADVALVAGAEAQSTATKLRKAGEKLDWTPQDEGPLADRGGDPRPMAS 154 (498)
T ss_pred cCCCCcceeEecCCCHHHHHHHHHHHHHHHCCCCCEEEEeeeeeccccchhccccccccccccccccccccccccccccc
Confidence 99965 4445667888999999999999999999999999999753221000
Q ss_pred HHh-hhhccc-------------cccC----------------------CCCC--------------------CCCcCcc
Q 011989 258 GFC-KSRALT-------------TKYN----------------------GTPQ--------------------EASRPFD 281 (473)
Q Consensus 258 ~~~-~~~~~~-------------~~~~----------------------~~~~--------------------~~~~pfd 281 (473)
.+. ..+... .+++ ..|. ..+.||.
T Consensus 155 ~~e~~~G~~~p~~~yal~a~ay~~~~G~t~e~~~a~~a~l~~~~~~~Aa~NP~A~~r~~~t~eevl~~~~~~rmIa~Pl~ 234 (498)
T PRK08257 155 PAELRHGLDRPVYVYPLFENALRAALGRSPEEHRAEMGELWAPFSAVAAKNPHAWIPRERSAEEIVTPTPDNRMIAWPYT 234 (498)
T ss_pred hhhhhcCCCCcchHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHhhCHHHhhCCCCCHHHHhcccCCCCeeeCCcc
Confidence 000 000000 0000 0010 0112222
Q ss_pred CCCCceeeccceEEEEEccchHHHhcCC--eEEEEEEEEEEecCCCCCC-CCCC-ChHHHHHHHHHHHHHcCCCCCCccE
Q 011989 282 CGRDGFVIGEGSGVLVLEELEHAKKRGA--KIYAEVRGYGMSGDAHHIT-QPHI-DGKGAILAMTRALKQSGLQSHQVDY 357 (473)
Q Consensus 282 ~~~~G~~~geGaaavvL~~~~~A~~~g~--~~~a~i~g~~~~~d~~~~~-~~~~-~~~~~~~a~~~al~~agl~~~dId~ 357 (473)
.-......+||++|+||.+++.|++.+. ...++|.|++..++..... .++. .......+.+++|+++|++++|||+
T Consensus 235 ~ldca~~~~DGaaAvil~S~e~A~~l~~~~~~~V~i~g~a~~~~~~~~~~r~~~~~~~~~~~aa~~a~~~AGi~~~Did~ 314 (498)
T PRK08257 235 KLMNANDMVDQGAAVLLTSVAKARRLGVPEDRWVYLHGGADAHDPYDILERPDLHRSPAIRAAGRRALALAGLGIDDIDA 314 (498)
T ss_pred HhhcCCCCcccceEEEEeeHHHHHhcCCCCCceEEEEEEEEeeCccccccccccccChHHHHHHHHHHHHhCCCHHHCCE
Confidence 1111122689999999999999998872 2347899999887764432 2222 1234457999999999999999999
Q ss_pred EEEcCCCCCCCCHHHHHHHHHHhhcccCC----CCceeecccc--chhhhHHhHHHHHHHHHHHHHHh
Q 011989 358 VNAHATSTPLGDTVEATAIRTVFSDHATS----GSLAFSSTKG--AIGHLLGAAGAVEAIFAVLAIHH 419 (473)
Q Consensus 358 v~~hgtgt~~~D~~E~~a~~~~~~~~~~~----~~~~v~s~k~--~~Gh~~~AsG~~~li~~~~~l~~ 419 (473)
+|+| +++.+..+...+.++ +++|++...+ .+||+.+++|+.+++++++||+.
T Consensus 315 ~ely----------dcF~~~~~~~~E~LGl~~~g~~pvN~sGGl~s~G~P~~a~g~~~i~E~v~QLRg 372 (498)
T PRK08257 315 FDLY----------SCFPSAVQVAARELGLDLDDPRPLTVTGGLPFFGGPGNNYVTHAIAEMVERLRA 372 (498)
T ss_pred EEec----------cCCHHHHHHHHHHcCcCCCCCCCcCCCcChhhcCCchhhHHHHHHHHHHHHHhh
Confidence 9999 555555554433322 3468888887 56999999999999999999996
|
|
| >PRK09352 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.2e-19 Score=177.23 Aligned_cols=242 Identities=18% Similarity=0.184 Sum_probs=162.3
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCCCCCCceeEEEecCCCChhhHHHHHHHHHHhccccCCCcchhhhhhhHHHHHHHHhc
Q 011989 128 RFIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKY 207 (473)
Q Consensus 128 ~~~~la~~aa~~Al~dAgl~~~~~~~~~~~gvivg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~l 207 (473)
...+|+.+|+++||+++|+++++++ .++++++... ...+..+.+|+..+
T Consensus 51 ~~~~la~~A~~~al~~agl~~~~id-----~vi~~~~~~~--------------------------~~~~~~~~~i~~~l 99 (319)
T PRK09352 51 TTSDLATEAAKKALEAAGIDPEDID-----LIIVATTTPD--------------------------YAFPSTACLVQARL 99 (319)
T ss_pred CHHHHHHHHHHHHHHHcCCCHHHCC-----EEEEEcCCCC--------------------------CCCchHHHHHHHHh
Confidence 3578999999999999999888776 7888775321 00123456899999
Q ss_pred CCCC-CeeeecCCcchHHHHHHHHHHHHHcCCCCEEEEeecCCCcChHHHHHHhhhhccccccCCCCCCCCcCccCCCCc
Q 011989 208 GFQG-PNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDG 286 (473)
Q Consensus 208 gl~G-p~~~v~~acasg~~Al~~A~~~I~~G~~d~vlv~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pfd~~~~G 286 (473)
|+++ +.+++..+|+|++.||..|.++|++|.+|.+||+++|.++... . ++.....
T Consensus 100 G~~~~~~~~v~~~Casg~~al~~A~~~i~~g~~~~vLvv~~e~~s~~~-----------------------~-~~~~~~~ 155 (319)
T PRK09352 100 GAKNAAAFDLSAACSGFVYALSTADQFIRSGAYKNVLVIGAEKLSRIV-----------------------D-WTDRSTC 155 (319)
T ss_pred CCCCCcEeeccccchhHHHHHHHHHHHHHcCCCCEEEEEEehhhcccc-----------------------C-cccCCce
Confidence 9988 8899999999999999999999999999999999999743211 0 1122346
Q ss_pred eeeccceEEEEEccchHHHhcCCeEEEEEEEEEEecCCCC---CCCCC-------------CC--------hHHHHHHHH
Q 011989 287 FVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHH---ITQPH-------------ID--------GKGAILAMT 342 (473)
Q Consensus 287 ~~~geGaaavvL~~~~~A~~~g~~~~a~i~g~~~~~d~~~---~~~~~-------------~~--------~~~~~~a~~ 342 (473)
+++||||+|+||++.+.. . +.++...+++.. ...|. .. .....++++
T Consensus 156 ~~~gDGaaA~ll~~~~~~-----~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 226 (319)
T PRK09352 156 VLFGDGAGAVVLGASEEP-----G----ILSTHLGSDGSYGDLLYLPGGGSRGPASPGYLRMEGREVFKFAVRELAKVAR 226 (319)
T ss_pred EEEeccceEEEEEEcCCC-----C----eEEEEEEEcCCCCCeEEeCCCCCCCCCCCCceEECCHHHHHHHHHHHHHHHH
Confidence 789999999999986532 1 122222222211 00000 00 122446889
Q ss_pred HHHHHcCCCCCCccEEEEcCCCCCCCCHHHHHHHHHHhhcccCCCCceeeccccchhhhHHhHHHHHHHHHHHHHHhCcc
Q 011989 343 RALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLAIHHGVA 422 (473)
Q Consensus 343 ~al~~agl~~~dId~v~~hgtgt~~~D~~E~~a~~~~~~~~~~~~~~~v~s~k~~~Gh~~~AsG~~~li~~~~~l~~~~i 422 (473)
++|+++|++++||+++.+|..+... . ..+.+.++... . .+......+||+.+|+-++.|..++ +.+.+
T Consensus 227 ~~l~~~g~~~~di~~~~~h~~~~~~----~-~~~~~~lg~~~--~--~~~~~~~~~Gn~~~a~~~~~L~~~~---~~g~~ 294 (319)
T PRK09352 227 EALEAAGLTPEDIDWLVPHQANLRI----I-DATAKKLGLPM--E--KVVVTVDKYGNTSAASIPLALDEAV---RDGRI 294 (319)
T ss_pred HHHHHcCCCHHHCCEEEECCCCHHH----H-HHHHHHhCCCH--H--HhhhhHHhhCCHHHHHHHHHHHHHH---HcCCC
Confidence 9999999999999999999654332 1 22334443321 1 1223345799999888777665443 33321
Q ss_pred CCCCCCCCCCCCCCCCCCccccCCCCCCcEEEEeccccccceeeEEEe
Q 011989 423 PLTLNLAKPDPIFNDNFMPLTASKDMPISAALSNSFGFGGTNASLLFT 470 (473)
Q Consensus 423 pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~g~gG~~~~~vl~ 470 (473)
.+.+.++.-++|.|-+-.+++|+
T Consensus 295 -------------------------~~Gd~vll~s~G~G~~~~~~ll~ 317 (319)
T PRK09352 295 -------------------------KRGDLVLLEGFGGGLTWGAALVR 317 (319)
T ss_pred -------------------------CCCCEEEEEEEchhheeEEEEEE
Confidence 12346667788988887888776
|
|
| >TIGR00747 fabH 3-oxoacyl-(acyl-carrier-protein) synthase III | Back alignment and domain information |
|---|
Probab=99.80 E-value=4.7e-18 Score=167.73 Aligned_cols=242 Identities=18% Similarity=0.185 Sum_probs=161.4
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCceeEEEecCCCChhhHHHHHHHHHHhccccCCCcchhhhhhhHHHHHHHHhcC
Q 011989 129 FIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYG 208 (473)
Q Consensus 129 ~~~la~~aa~~Al~dAgl~~~~~~~~~~~gvivg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lg 208 (473)
...|+.+|+++||+++|+++.+++ .+++++.... ...+..+.+++..+|
T Consensus 51 ~~~la~~A~~~al~~agl~~~~Id-----~~i~~~~~~~--------------------------~~~~~~a~~l~~~lG 99 (318)
T TIGR00747 51 SSTMGFEAAKRAIENAGISKDDID-----LIIVATTTPD--------------------------HAFPSAACMVQAYLG 99 (318)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCC-----EEEEECCCCC--------------------------CCCChHHHHHHHHhC
Confidence 578999999999999999888776 7777764321 111234578999999
Q ss_pred CCC-CeeeecCCcchHHHHHHHHHHHHHcCCCCEEEEeecCCCcChHHHHHHhhhhccccccCCCCCCCCcCccCCCCce
Q 011989 209 FQG-PNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDGF 287 (473)
Q Consensus 209 l~G-p~~~v~~acasg~~Al~~A~~~I~~G~~d~vlv~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pfd~~~~G~ 287 (473)
+++ +.+.+..+|++++.||..|+++|++|.++.+||+++|.+.... .+. .....+
T Consensus 100 l~~~~~~~v~~~C~s~~~al~~A~~~i~~g~~~~~Lvv~~e~~~~~~-----------------------~~~-~~~~~~ 155 (318)
T TIGR00747 100 IKGIPAFDLSAACAGFIYALSVAKQYIESGKYKTVLVVGAEKLSSTL-----------------------DWT-DRGTCV 155 (318)
T ss_pred CCCCcEeehhhhhHHHHHHHHHHHHHHHcCCCCEEEEEEehhhcCcC-----------------------CcC-CCCeEE
Confidence 998 8999999999999999999999999999999999999743221 011 122356
Q ss_pred eeccceEEEEEccchHHHhcCCeEEEEEEEEEEecCCCC---CCCC-------CC--------------ChHHHHHHHHH
Q 011989 288 VIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHH---ITQP-------HI--------------DGKGAILAMTR 343 (473)
Q Consensus 288 ~~geGaaavvL~~~~~A~~~g~~~~a~i~g~~~~~d~~~---~~~~-------~~--------------~~~~~~~a~~~ 343 (473)
++||||+|+||++.+... . |.......++.. ...| .. ......+++++
T Consensus 156 ~~GDGAaA~lL~~~~~~~----~----i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (318)
T TIGR00747 156 LFGDGAGAVVLGESEDPG----G----IISTHLGADGTQGEALYLPAGGRPTSGPSPFITMEGNEVFKHAVRKMGDVVEE 227 (318)
T ss_pred EEecceeEEEEeecCCCC----c----EEEEEEEEcCCCcceEEECCCCcCCCCCCCceEECCHHHHHHHHHHHHHHHHH
Confidence 799999999998755321 1 222222222210 0000 00 01223567889
Q ss_pred HHHHcCCCCCCccEEEEcCCCCCCCCHHHHHHHHHHhhcccCCCCceeeccccchhhhHHhHHHHHHHHHHHHHHhCccC
Q 011989 344 ALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLAIHHGVAP 423 (473)
Q Consensus 344 al~~agl~~~dId~v~~hgtgt~~~D~~E~~a~~~~~~~~~~~~~~~v~s~k~~~Gh~~~AsG~~~li~~~~~l~~~~ip 423 (473)
+|+++|++++||+++.+|..+.+.- ..+.+.++... .++. .+. ..+||+.+|+=.+.|..++ +.+.+.
T Consensus 228 ~l~~~g~~~~di~~~~~h~~~~~~~-----~~~~~~lgi~~--~k~~-~~~-~~~Gn~~sas~~~~L~~~~---~~~~~~ 295 (318)
T TIGR00747 228 TLEANGLDPEDIDWFVPHQANLRII-----EALAKRLELDM--SQVV-KTV-HKYGNTSAASIPLALDELL---RTGRIK 295 (318)
T ss_pred HHHHcCCCHHHCCEEEECCCCHHHH-----HHHHHHcCCCH--HHee-ehH-hhhCCHHHHHHHHHHHHHH---HcCCCC
Confidence 9999999999999999997654432 22334444321 1122 222 4599999988776665433 333221
Q ss_pred CCCCCCCCCCCCCCCCCccccCCCCCCcEEEEeccccccceeeEEEe
Q 011989 424 LTLNLAKPDPIFNDNFMPLTASKDMPISAALSNSFGFGGTNASLLFT 470 (473)
Q Consensus 424 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~g~gG~~~~~vl~ 470 (473)
+.+.++.-++|-|.+..+++|+
T Consensus 296 -------------------------~Gd~vll~~~G~G~t~~~~~l~ 317 (318)
T TIGR00747 296 -------------------------PGDLLLLVAFGGGLTWGAALVR 317 (318)
T ss_pred -------------------------CCCEEEEEEEehhheeeEEEEE
Confidence 2346666788988888888875
|
Active site residues include Cys112, His244 and Asn274 of E. coli FabH. Cys-112 is the site of acyl group attachment. |
| >PRK06816 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed | Back alignment and domain information |
|---|
Probab=99.79 E-value=2e-17 Score=166.57 Aligned_cols=240 Identities=17% Similarity=0.173 Sum_probs=154.1
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCceeEEEecCCCChhhHHHHHHHHHHhccccCCCcchhhhhhhHHHHHHHHhcC
Q 011989 129 FIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYG 208 (473)
Q Consensus 129 ~~~la~~aa~~Al~dAgl~~~~~~~~~~~gvivg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lg 208 (473)
...|+.+|+++||+++|+++++++ .+++++..+. +..+..+..|...+|
T Consensus 63 ~~~La~~A~~~aL~~agi~~~dId-----~li~~s~~~~--------------------------~~~p~~a~~v~~~Lg 111 (378)
T PRK06816 63 NAQMAAEAIRDLLDDAGFSLGDIE-----LLACGTSQPD--------------------------QLMPGHASMVHGELG 111 (378)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCC-----EEEEEECCCC--------------------------cCChHHHHHHHhhCC
Confidence 578999999999999999888887 7888775421 111233457888999
Q ss_pred CCC-CeeeecCCcchHHHHHHHHHHHHHcCCCCEEEEeecCCCcChHHHHHHhh-hhccccccCCCCCCCCcCccCCCCc
Q 011989 209 FQG-PNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCK-SRALTTKYNGTPQEASRPFDCGRDG 286 (473)
Q Consensus 209 l~G-p~~~v~~acasg~~Al~~A~~~I~~G~~d~vlv~g~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~pfd~~~~G 286 (473)
++. +.+.+..+|+|++.||..|.++|++|..+.+||+++|.++.......+.. .+.+.. .+...++||+.+..+
T Consensus 112 l~~~~~~~v~~~Cas~~~al~~A~~~i~sg~~~~vLvv~~E~~s~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 187 (378)
T PRK06816 112 APPIEVVSSAGVCAAGMMALKYAYLSVKAGESRNAVATASELASRWFRASRFEAEEEKLAE----LEENPEIAFEKDFLR 187 (378)
T ss_pred CCCCceeeecCcCHHHHHHHHHHHHHHHCCCCCEEEEEeEccchhhhhhhhhhhHHHHhhc----CcccCCCCCCCCCCC
Confidence 876 88899999999999999999999999999999999998765554332321 222221 123467889999999
Q ss_pred eeeccceEEEEEccchHHHhcCCeEEE-EE--EEEEEec-----CC-C--------CCC--CCC-----------CChH-
Q 011989 287 FVIGEGSGVLVLEELEHAKKRGAKIYA-EV--RGYGMSG-----DA-H--------HIT--QPH-----------IDGK- 335 (473)
Q Consensus 287 ~~~geGaaavvL~~~~~A~~~g~~~~a-~i--~g~~~~~-----d~-~--------~~~--~~~-----------~~~~- 335 (473)
+++||||+|+||++.+.. .|..... .+ ..++... .+ . ... .+. ....
T Consensus 188 ~~fGDGA~A~vl~~~~~~--~g~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (378)
T PRK06816 188 WMLSDGAGAVLLENKPRP--DGLSLRIDWIDLRSYAGELPVCMYAGAEKNEDGSLKGWSDYPPEEAEAASALSLKQDVRL 265 (378)
T ss_pred EeeecccEEEEEEecCCC--CCceEEEEEEeeecccccCccceecCCccCCCCCccCcccCCHHHHHhccCchHHhHHHH
Confidence 999999999999865431 1221100 00 0000000 00 0 000 000 0111
Q ss_pred -------HHHHHHHHHHHHcCCCCCCccEEEEcCCCCCCCCHHHHHHHHHH----hhcccCCCCceeeccccchhhhHHh
Q 011989 336 -------GAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTV----FSDHATSGSLAFSSTKGAIGHLLGA 404 (473)
Q Consensus 336 -------~~~~a~~~al~~agl~~~dId~v~~hgtgt~~~D~~E~~a~~~~----~~~~~~~~~~~v~s~k~~~Gh~~~A 404 (473)
.....++++|+++|++++|||++.+|-.+.. +-....+++ ++... .++. ..-..+||+.+|
T Consensus 266 ~~~~~~~~~~~~i~~~L~~~gl~~~DId~~v~Hq~n~~----~~~~v~~~l~~~~~gl~~--~k~~--~~~~~~GNt~sA 337 (378)
T PRK06816 266 LNENIVVYTIKPLLELVDKRNLDPDDIDYFLPHYSSEY----FREKIVELLAKAGFMIPE--EKWF--TNLATVGNTGSA 337 (378)
T ss_pred HHHHhHHHHHHHHHHHHHHcCCChhhCCEEeeCcccHH----HHHHHHHHHHhccCCCCh--hheE--Eeccccccccch
Confidence 1256788899999999999999999944322 222222222 12110 1122 333589999999
Q ss_pred HHHHHHHHH
Q 011989 405 AGAVEAIFA 413 (473)
Q Consensus 405 sG~~~li~~ 413 (473)
+-.+.|..+
T Consensus 338 sipi~L~~a 346 (378)
T PRK06816 338 SIYIMLDEL 346 (378)
T ss_pred HHHHHHHHH
Confidence 877766544
|
|
| >PRK12879 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.5e-18 Score=169.17 Aligned_cols=242 Identities=20% Similarity=0.229 Sum_probs=160.8
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCceeEEEecCCCChhhHHHHHHHHHHhccccCCCcchhhhhhhHHHHHHHHhcC
Q 011989 129 FIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYG 208 (473)
Q Consensus 129 ~~~la~~aa~~Al~dAgl~~~~~~~~~~~gvivg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lg 208 (473)
...|+.+|+++||+++|+++++++ .|++++.... ...+..+.+++..+|
T Consensus 53 ~~~la~~A~~~al~~ag~~~~~Id-----~li~~~~~~~--------------------------~~~~~~a~~l~~~lg 101 (325)
T PRK12879 53 TSDLAIKAAERALARAGLDAEDID-----LIIVATTTPD--------------------------YLFPSTASQVQARLG 101 (325)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCC-----EEEEEcCCCC--------------------------CCCChHHHHHHHHhC
Confidence 578999999999999999887776 7777764321 112345678999999
Q ss_pred CCC-CeeeecCCcchHHHHHHHHHHHHHcCCCCEEEEeecCCCcChHHHHHHhhhhccccccCCCCCCCCcCccCCCCce
Q 011989 209 FQG-PNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDGF 287 (473)
Q Consensus 209 l~G-p~~~v~~acasg~~Al~~A~~~I~~G~~d~vlv~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pfd~~~~G~ 287 (473)
++. +.+.++.+|++++.||..|.++|++|.++.+||+++|.+.... .++......
T Consensus 102 ~~~~~~~~v~~~C~~~~~al~~A~~~l~~g~~~~~Lvv~~e~~s~~~------------------------~~~~~~~~~ 157 (325)
T PRK12879 102 IPNAAAFDINAACAGFLYGLETANGLITSGLYKKVLVIGAERLSKVT------------------------DYTDRTTCI 157 (325)
T ss_pred CCCCcEEEECccchHHHHHHHHHHHHHHcCCCCEEEEEEehhhcCcC------------------------CccccCceE
Confidence 974 8899999999999999999999999999999999999743211 011123457
Q ss_pred eeccceEEEEEccchHHHhcCCeEEEEEEEEEEecCCC----------CCCCC----------CCCh--------HHHHH
Q 011989 288 VIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAH----------HITQP----------HIDG--------KGAIL 339 (473)
Q Consensus 288 ~~geGaaavvL~~~~~A~~~g~~~~a~i~g~~~~~d~~----------~~~~~----------~~~~--------~~~~~ 339 (473)
++||||+|+||++.+.. ..+ ......+++. ....+ ...+ ....+
T Consensus 158 ~~GDgAaA~ll~~~~~~----~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (325)
T PRK12879 158 LFGDGAGAVVLEATENE----PGF----IDYVLGTDGDGGDILYRTGLGTTMDRDALSGDGYIVQNGREVFKWAVRTMPK 229 (325)
T ss_pred EEeecceEEEEEecCCC----CCe----EEEEEEEcCCCCCeEEEcCCCCCCCccccccCccEEEcCHHHHHHHHHHHHH
Confidence 89999999999975531 111 1111111110 00000 0011 12346
Q ss_pred HHHHHHHHcCCCCCCccEEEEcCCCCCCCCHHHHHHHHHHhhcccCCCCceeeccccchhhhHHhHHHHHHHHHHHHHHh
Q 011989 340 AMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLAIHH 419 (473)
Q Consensus 340 a~~~al~~agl~~~dId~v~~hgtgt~~~D~~E~~a~~~~~~~~~~~~~~~v~s~k~~~Gh~~~AsG~~~li~~~~~l~~ 419 (473)
+++++|+++|++++|||++.+|..+.+. ...+.+.++... .++.. ....+||+.+|+-.+.|..+ ++.
T Consensus 230 ~i~~~L~~~g~~~~did~~~~h~~~~~~-----~~~~~~~lg~~~--~~~~~--~~~~~Gn~~sas~~~~L~~~---~~~ 297 (325)
T PRK12879 230 GARQVLEKAGLTKDDIDWVIPHQANLRI-----IESLCEKLGIPM--EKTLV--SVEYYGNTSAATIPLALDLA---LEQ 297 (325)
T ss_pred HHHHHHHHcCCCHHHCCEEEECCCCHHH-----HHHHHHHcCCCH--HHhhh--hHhhhCchHHHHHHHHHHHH---HHc
Confidence 7899999999999999999999544322 234555554321 12222 34689999988877666433 343
Q ss_pred CccCCCCCCCCCCCCCCCCCCccccCCCCCCcEEEEeccccccceeeEEEe
Q 011989 420 GVAPLTLNLAKPDPIFNDNFMPLTASKDMPISAALSNSFGFGGTNASLLFT 470 (473)
Q Consensus 420 ~~ipp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~g~gG~~~~~vl~ 470 (473)
+.+ .+...++.-+||.|-+..++|++
T Consensus 298 g~~-------------------------~~Gd~vll~~~G~G~~~~~~l~~ 323 (325)
T PRK12879 298 GKI-------------------------KPGDTLLLYGFGAGLTWAALLVK 323 (325)
T ss_pred CCC-------------------------CCCCEEEEEEEchhhhhEEEEEE
Confidence 321 12346677789998888888876
|
|
| >KOG1406 consensus Peroxisomal 3-ketoacyl-CoA-thiolase P-44/SCP2 [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.79 E-value=9.3e-20 Score=163.90 Aligned_cols=280 Identities=22% Similarity=0.295 Sum_probs=181.3
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCCCceeEEEecCCCChhhHHHHHHHHHHhccccCCCcchhhhhhhHHHHHHHHhcCCC
Q 011989 131 AYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYGFQ 210 (473)
Q Consensus 131 ~la~~aa~~Al~dAgl~~~~~~~~~~~gvivg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lgl~ 210 (473)
.++-+|...||+|+++...+++ -.-+|.++|-+..+. |.-+.+|++
T Consensus 31 d~a~ea~tkal~da~ikys~vq-qa~vgyvfgdstcgq---------------------------------raiyevgmt 76 (408)
T KOG1406|consen 31 DFAKEAITKALQDAGIKYSEVQ-QAVVGYVFGDSTCGQ---------------------------------RAIYEVGMT 76 (408)
T ss_pred hHHHHHHHHHHHhcCCCHHHHH-hhhheeeecCCccch---------------------------------HHHHhcccc
Confidence 4667899999999999776663 455576666544321 334467889
Q ss_pred C-CeeeecCCcchHHHHHHHHHHHHHcCCCCEEEEeecCCCcChH------------------------------HHHHH
Q 011989 211 G-PNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDAL------------------------------SMAGF 259 (473)
Q Consensus 211 G-p~~~v~~acasg~~Al~~A~~~I~~G~~d~vlv~g~d~~~~~~------------------------------~~~~~ 259 (473)
| |.+.|++.|++|..||.+|.+.|++|..|+||+.|.|.+..-. ....|
T Consensus 77 gipi~nvnnncatgssalflakqiiesgn~dcvlalgfekm~~gsl~~k~~dra~p~dkhi~~m~e~ygl~a~pmaaqmf 156 (408)
T KOG1406|consen 77 GIPIYNVNNNCATGSSALFLAKQIIESGNSDCVLALGFEKMERGSLSNKAADRALPVDKHISVMSETYGLEAAPMAAQMF 156 (408)
T ss_pred CcceeeccCccccCchHHHHHHHHHhcCCcceEEeechhhhCCcccchhhhhccCcchhhHHHHHhhccCCCCcchHHHh
Confidence 9 9999999999999999999999999999999999999854211 00000
Q ss_pred h--------hhhccccc-----cCCCCCCCCcCccCCCCcee---------------------eccceEEEEEccchHHH
Q 011989 260 C--------KSRALTTK-----YNGTPQEASRPFDCGRDGFV---------------------IGEGSGVLVLEELEHAK 305 (473)
Q Consensus 260 ~--------~~~~~~~~-----~~~~~~~~~~pfd~~~~G~~---------------------~geGaaavvL~~~~~A~ 305 (473)
. +.+.-... ++........||.+-++.+- .+||++|.||.++...+
T Consensus 157 gnagkehmekygtk~ehfakiawknhkhsvnnpysqf~deysldqvm~s~~v~dflt~lqccptsdgaaaailaseafv~ 236 (408)
T KOG1406|consen 157 GNAGKEHMEKYGTKPEHFAKIAWKNHKHSVNNPYSQFRDEYSLDQVMKSPQVVDFLTKLQCCPTSDGAAAAILASEAFVR 236 (408)
T ss_pred hhhHHHHHHHhCCCHHHHhHhhhhccccccCChhHhhhhhccHHHHhcchHHHHHHHHhhcCCCCCchHHHHHhHHHHHH
Confidence 0 00000000 00011122334443333332 69999999999998888
Q ss_pred hcCCeEE-EEEEEEEEecCCCCCCC-CCC----ChHHHHHHHHHHHHHcCCCCCCccEEEEcCCCCCCCCHHHHHHHHHH
Q 011989 306 KRGAKIY-AEVRGYGMSGDAHHITQ-PHI----DGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTV 379 (473)
Q Consensus 306 ~~g~~~~-a~i~g~~~~~d~~~~~~-~~~----~~~~~~~a~~~al~~agl~~~dId~v~~hgtgt~~~D~~E~~a~~~~ 379 (473)
+.|..-. ++|.|..+.+|...... .+. -....+.+.++.+++.|++|.||++||+|.+-.+- |.-.+..+
T Consensus 237 k~gl~~qaveivg~em~td~ps~faeks~ikm~gfdm~~~aa~~l~aksgltpndvqvielhdcfs~n----elityeal 312 (408)
T KOG1406|consen 237 KHGLEKQAVEIVGMEMATDPPSTFAEKSLIKMAGFDMTRLAAKRLFAKSGLTPNDVQVIELHDCFSAN----ELITYEAL 312 (408)
T ss_pred hcccHHHHHHHHHHHhccCCchhhhhhhhhhhhcchHHHHHHHHHHHHcCCCcccceEEEeecccchh----hhhhHHHh
Confidence 7775432 35777766666432111 000 01234678899999999999999999999443322 32222222
Q ss_pred h-------------hcccCCCCceeecccc--chhhhHHhHHHHHHHHHHHHHHhCccCCCCCCCCCCCCCCCCCCcccc
Q 011989 380 F-------------SDHATSGSLAFSSTKG--AIGHLLGAAGAVEAIFAVLAIHHGVAPLTLNLAKPDPIFNDNFMPLTA 444 (473)
Q Consensus 380 ~-------------~~~~~~~~~~v~s~k~--~~Gh~~~AsG~~~li~~~~~l~~~~ipp~~~~~~~~~~~~~~~~~~~~ 444 (473)
- ++...++++-|+...+ .-|||+||+|+++.++...|||.-. ..
T Consensus 313 glcpegqg~~~vdrgdntyggkwvinpsggliskghplgatglaqcaelcwqlrg~a---------------------gk 371 (408)
T KOG1406|consen 313 GLCPEGQGGEFVDRGDNTYGGKWVINPSGGLISKGHPLGATGLAQCAELCWQLRGLA---------------------GK 371 (408)
T ss_pred cCCCCCCCceeeecCCCccCceEEECCCCccccCCCcCccchHHHHHHHHHHHhhhh---------------------cc
Confidence 1 1112335667777777 5699999999999999999998632 22
Q ss_pred CCCCCCcEEEEeccccccceeeEEE
Q 011989 445 SKDMPISAALSNSFGFGGTNASLLF 469 (473)
Q Consensus 445 ~~~~~~~~~l~~s~g~gG~~~~~vl 469 (473)
.|....+.+|-++.|.||..+..+.
T Consensus 372 rqvpnakvalqhnlgiggavvv~ly 396 (408)
T KOG1406|consen 372 RQVPNAKVALQHNLGIGGAVVVALY 396 (408)
T ss_pred ccCCCchhhhhhccCcCceeEEEEe
Confidence 2333456777888888887655443
|
|
| >cd00830 KAS_III Ketoacyl-acyl carrier protein synthase III (KASIII) initiates the elongation in type II fatty acid synthase systems | Back alignment and domain information |
|---|
Probab=99.77 E-value=8.1e-18 Score=166.19 Aligned_cols=214 Identities=19% Similarity=0.223 Sum_probs=147.5
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCCCCCCceeEEEecCCCChhhHHHHHHHHHHhccccCCCcchhhhhhhHHHHHHHHhc
Q 011989 128 RFIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKY 207 (473)
Q Consensus 128 ~~~~la~~aa~~Al~dAgl~~~~~~~~~~~gvivg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~l 207 (473)
....|+.+|+++||+++|+++++++ .+++++..... ..+..+.+++..+
T Consensus 49 ~~~~la~~A~~~al~~ag~~~~~Id-----~li~~~~~~~~--------------------------~~~~~~~~l~~~l 97 (320)
T cd00830 49 TTSDLAVEAAKKALEDAGIDADDID-----LIIVATSTPDY--------------------------LFPATACLVQARL 97 (320)
T ss_pred CHHHHHHHHHHHHHHHcCCCHHHCC-----EEEEEcCCCCC--------------------------CCCcHHHHHHHHh
Confidence 3578999999999999999888776 77777643210 1123567899999
Q ss_pred CCC-CCeeeecCCcchHHHHHHHHHHHHHcCCCCEEEEeecCCCcChHHHHHHhhhhccccccCCCCCCCCcCccCCCCc
Q 011989 208 GFQ-GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDG 286 (473)
Q Consensus 208 gl~-Gp~~~v~~acasg~~Al~~A~~~I~~G~~d~vlv~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pfd~~~~G 286 (473)
|++ .+.+.+..+|++++.||..|.++|++|.++.+||+++|.+.... .|+....+
T Consensus 98 g~~~~~~~~v~~~C~s~~~al~~A~~~i~~g~~~~vLvv~~e~~s~~~------------------------~~~~~~~~ 153 (320)
T cd00830 98 GAKNAAAFDINAACSGFLYGLSTAAGLIRSGGAKNVLVVGAETLSRIL------------------------DWTDRSTA 153 (320)
T ss_pred CCCCCcEeeccccchHHHHHHHHHHHHHHcCCCCEEEEEEehhhcccc------------------------CcccCCce
Confidence 994 58899999999999999999999999999999999999743211 03334568
Q ss_pred eeeccceEEEEEccchHHHhcCCeEEEEEEEEEEecCCCC-----CCC-----C-----------CCC--------hHHH
Q 011989 287 FVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHH-----ITQ-----P-----------HID--------GKGA 337 (473)
Q Consensus 287 ~~~geGaaavvL~~~~~A~~~g~~~~a~i~g~~~~~d~~~-----~~~-----~-----------~~~--------~~~~ 337 (473)
+++||||+|+||++.+. +.. |.++...+++.. ... | ... ....
T Consensus 154 ~~~GDgAaA~ll~~~~~----~~~----i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (320)
T cd00830 154 VLFGDGAGAVVLEATEE----DPG----ILDSVLGSDGSGADLLTIPAGGSRSPFEDAEGGDPYLVMDGREVFKFAVRLM 225 (320)
T ss_pred EEEeccceEEEEEecCC----CCc----EEEEEEEEcCCCCCeEEeCCCCcCCccccccccCccEEEcChHHHHHHHHhh
Confidence 89999999999997543 112 233333322211 000 0 000 1224
Q ss_pred HHHHHHHHHHcCCCCCCccEEEEcCCCCCCCCHHHHHHHHHHhhcccCCCCceeeccccchhhhHHhHHHHHHHHH
Q 011989 338 ILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFA 413 (473)
Q Consensus 338 ~~a~~~al~~agl~~~dId~v~~hgtgt~~~D~~E~~a~~~~~~~~~~~~~~~v~s~k~~~Gh~~~AsG~~~li~~ 413 (473)
.++++++|+++|++++|||++.+|..+.... ..+.+.++... .++ ...-..+||+.+|+-.+.|..+
T Consensus 226 ~~~i~~~l~~~g~~~~di~~~~~h~~~~~~~-----~~~~~~lgl~~--~~~--~~~~~~~Gn~~sas~~~~L~~~ 292 (320)
T cd00830 226 PESIEEALEKAGLTPDDIDWFVPHQANLRII-----EAVAKRLGLPE--EKV--VVNLDRYGNTSAASIPLALDEA 292 (320)
T ss_pred HHHHHHHHHHcCCCHHHCCEEEECCCCHHHH-----HHHHHHhCCCH--HHh--hhhHHhhCcHHHHHHHHHHHHH
Confidence 5788999999999999999999996655442 22444444321 112 2344579999999877766544
|
It is found in bacteria and plants. Elongation of fatty acids in the type II systems occurs by Claisen condensation of malonyl-acyl carrier protein (ACP) with acyl-ACP. KASIII initiates this process by specifically using acetyl-CoA over acyl-CoA. |
| >PRK09258 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.3e-17 Score=164.22 Aligned_cols=260 Identities=22% Similarity=0.209 Sum_probs=167.6
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCceeEEEecCCCChhhHHHHHHHHHHhccccCCCcchhhhhhhHHHHHHHHhcC
Q 011989 129 FIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYG 208 (473)
Q Consensus 129 ~~~la~~aa~~Al~dAgl~~~~~~~~~~~gvivg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lg 208 (473)
...|+.+|+++||+++|+++++++ .|++++... ....+..+.+++..+|
T Consensus 61 ~~~la~~Aa~~aL~~ag~~~~~Id-----~li~~s~~~--------------------------~~~~p~~a~~v~~~lg 109 (338)
T PRK09258 61 LSDGAIAAGRKALAEAGIDPSDIG-----LLINTSVCR--------------------------DYLEPATACRVHHNLG 109 (338)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCC-----EEEEEcCCC--------------------------CCCCChHHHHHHHHcC
Confidence 578999999999999999888776 777776431 1122346678999999
Q ss_pred CCC--CeeeecCCcchHHHHHHHHHHHHHcCCCCEEEEeecCCCcChHHHHHHhhhhccccccCCCCCCCCcCccCCCCc
Q 011989 209 FQG--PNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDG 286 (473)
Q Consensus 209 l~G--p~~~v~~acasg~~Al~~A~~~I~~G~~d~vlv~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pfd~~~~G 286 (473)
++. +.+.|..+|+|++.||.+|.++|++|.++.+||+++|.+..... ..+. .... +.....+|+.....
T Consensus 110 l~~~~~~~~v~~~C~~~~~al~~A~~~i~~g~~~~~Lvv~~e~~s~~~~-~~~~--~~~~------~~~~~~~~~~~~~~ 180 (338)
T PRK09258 110 LPKSCANFDVSNACLGFLNGMLDAANMIELGQIDYALVVSGESAREIVE-ATID--RLLA------PETTREDFAQSFAT 180 (338)
T ss_pred CCCCCceeehhhhhHHHHHHHHHHHHHHHcCCCCEEEEEEecccchhcc-chhh--hhcc------Cccchhhhhhccce
Confidence 963 78999999999999999999999999999999999997543211 0010 0000 11122456666678
Q ss_pred eeeccceEEEEEccchHHHhcCCeEEEEEEEEEEecCCCCCC--CC-----CCCh--------HHHHHHHHHHHHHcCCC
Q 011989 287 FVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHIT--QP-----HIDG--------KGAILAMTRALKQSGLQ 351 (473)
Q Consensus 287 ~~~geGaaavvL~~~~~A~~~g~~~~a~i~g~~~~~d~~~~~--~~-----~~~~--------~~~~~a~~~al~~agl~ 351 (473)
+.+||||+|+||++.+.. ..+. .+.+.....++.+.. .. .... .....+++++|+++|++
T Consensus 181 ~~~GDGA~A~ll~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~g~~ 255 (338)
T PRK09258 181 LTLGSGAAAAVLTRGSLH-PRGH----RLLGGVTRAATEHHELCQGGRDGMRTDAVGLLKEGVELAVDTWEAFLAQLGWA 255 (338)
T ss_pred EEecccceEEEEecCCCC-CCcc----eeeeeeeecCCCcccccccCccceEEcHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 899999999999975421 1111 233333333322210 00 0111 22345788999999999
Q ss_pred CCCccEEEEcCCCCCCCCHHHHHHHHHHhhcccCCCCceeeccccchhhhHHhHHHHHHHHHHHHHHhCccCCCCCCCCC
Q 011989 352 SHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLAIHHGVAPLTLNLAKP 431 (473)
Q Consensus 352 ~~dId~v~~hgtgt~~~D~~E~~a~~~~~~~~~~~~~~~v~s~k~~~Gh~~~AsG~~~li~~~~~l~~~~ipp~~~~~~~ 431 (473)
++|||++.+|..+.+..+ .+.+.++... .+++. +. ..+||+.+|+=.+.|..+ ++.+.+
T Consensus 256 ~~did~~i~H~~~~~~~~-----~~~~~lgl~~--~k~~~-~~-~~~GN~~sas~~~~L~~~---~~~g~~--------- 314 (338)
T PRK09258 256 VEQVDRVICHQVGAAHTR-----AILKALGIDP--EKVFT-TF-PTLGNMGPASLPITLAMA---AEEGFL--------- 314 (338)
T ss_pred HHHCCEEecCCCCHHHHH-----HHHHHhCCCH--HHcee-hH-hhhCCcHHhHHHHHHHHH---HHhCCC---------
Confidence 999999999966554422 3444444321 12222 33 479999988766655543 333221
Q ss_pred CCCCCCCCCccccCCCCCCcEEEEeccccccceeeEEEe
Q 011989 432 DPIFNDNFMPLTASKDMPISAALSNSFGFGGTNASLLFT 470 (473)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~~~l~~s~g~gG~~~~~vl~ 470 (473)
.+-..++..+||-|-+...++++
T Consensus 315 ----------------~~Gd~vll~~~G~G~s~~~~~~~ 337 (338)
T PRK09258 315 ----------------KPGDRVALLGIGSGLNCSMLEVK 337 (338)
T ss_pred ----------------CCCCEEEEEEechhHhhHhHeee
Confidence 12356677788887666665554
|
|
| >PLN02326 3-oxoacyl-[acyl-carrier-protein] synthase III | Back alignment and domain information |
|---|
Probab=99.77 E-value=9e-17 Score=161.83 Aligned_cols=243 Identities=19% Similarity=0.238 Sum_probs=157.9
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCCCCCCceeEEEecCCCChhhHHHHHHHHHHhccccCCCcchhhhhhhHHHHHHHHhc
Q 011989 128 RFIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKY 207 (473)
Q Consensus 128 ~~~~la~~aa~~Al~dAgl~~~~~~~~~~~gvivg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~l 207 (473)
....|+.+|+++||+++|+++++++ .|+++++.+. .. . ..+..++..|
T Consensus 95 ~~~~La~~Aa~~aL~~agi~~~dId-----~li~~s~~~~----------------------~~----~-~~a~~v~~~L 142 (379)
T PLN02326 95 TLTSLAVEAAKKALEMAGVDPEDVD-----LVLLCTSSPD----------------------DL----F-GSAPQVQAAL 142 (379)
T ss_pred CHHHHHHHHHHHHHHHcCCCHHHCC-----EEEEEeCCCC----------------------cc----C-cHHHHHHHHh
Confidence 3578999999999999999887776 6777764321 00 0 1345789999
Q ss_pred CCCC-CeeeecCCcchHHHHHHHHHHHHHcCCCCEEEEeecCCCcChHHHHHHhhhhccccccCCCCCCCCcCccCCCCc
Q 011989 208 GFQG-PNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDG 286 (473)
Q Consensus 208 gl~G-p~~~v~~acasg~~Al~~A~~~I~~G~~d~vlv~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pfd~~~~G 286 (473)
|+++ +++.+..+|++++.||.+|.++|++|.++.+||+++|.+.... .++...+.
T Consensus 143 G~~~~~~~dv~~~Ca~~~~aL~~A~~~l~~g~~~~vLVv~~e~~s~~~------------------------~~~d~~~~ 198 (379)
T PLN02326 143 GCTNALAFDLTAACSGFVLGLVTAARFIRGGGYKNVLVIGADALSRYV------------------------DWTDRGTC 198 (379)
T ss_pred CCCCCceeeccccchHHHHHHHHHHHHHHcCCCCEEEEEEechhcCCC------------------------CccccCce
Confidence 9976 7889999999999999999999999999999999999742111 02223456
Q ss_pred eeeccceEEEEEccchHHHhcCCeEEEEEEEEEEecCCCC-----------------------CCCC---------CCCh
Q 011989 287 FVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHH-----------------------ITQP---------HIDG 334 (473)
Q Consensus 287 ~~~geGaaavvL~~~~~A~~~g~~~~a~i~g~~~~~d~~~-----------------------~~~~---------~~~~ 334 (473)
+++||||+|+||++.+... ..+ .++...+++.+ ...+ ...+
T Consensus 199 ~lfGDGAaAvlL~~~~~~~---~~i----~~~~~~t~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 271 (379)
T PLN02326 199 ILFGDGAGAVVLQACDDDE---DGL----LGFDMHSDGNGHKHLHATFKGEDDDSSGGNTNGVGDFPPKKASYSCIQMNG 271 (379)
T ss_pred EEEcceeEEEEEEEcCCCC---Cce----EEEEEEEcCCCCCeEEecCCCCcccccccccccccccccccccccceEecC
Confidence 7899999999999754221 111 11111111100 0000 0011
Q ss_pred --------HHHHHHHHHHHHHcCCCCCCccEEEEcCCCCCCCCHHHHHHHHHHhhcccCCCCceeeccccchhhhHHhHH
Q 011989 335 --------KGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAG 406 (473)
Q Consensus 335 --------~~~~~a~~~al~~agl~~~dId~v~~hgtgt~~~D~~E~~a~~~~~~~~~~~~~~~v~s~k~~~Gh~~~AsG 406 (473)
....++++++|+++|++++|||++.+|-.+. .+- ..+.+.++... .+++ .+. ..+||+.+|+=
T Consensus 272 ~~v~~~~~~~~~~~i~~~L~~~gl~~~dId~~v~Hq~n~----~~~-~~~~~~Lgl~~--ek~~-~~l-~~~GNt~sAsi 342 (379)
T PLN02326 272 KEVFKFAVRCVPQVIESALQKAGLTAESIDWLLLHQANQ----RII-DAVAQRLGIPP--EKVI-SNL-ANYGNTSAASI 342 (379)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEECCCCH----HHH-HHHHHHcCCCH--HHee-ecH-hhcCcHHHHHH
Confidence 1133578899999999999999999995433 322 22444444321 1222 233 58999998886
Q ss_pred HHHHHHHHHHHHhCccCCCCCCCCCCCCCCCCCCccccCCCCCCcEEEEeccccccceeeEEEe
Q 011989 407 AVEAIFAVLAIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPISAALSNSFGFGGTNASLLFT 470 (473)
Q Consensus 407 ~~~li~~~~~l~~~~ipp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~g~gG~~~~~vl~ 470 (473)
.+.|..+ ++.+.+ .+-..++.-+||-|-+..+++|+
T Consensus 343 ~~~L~~~---~~~g~~-------------------------~~Gd~vll~~~G~G~t~~~~ll~ 378 (379)
T PLN02326 343 PLALDEA---VRSGKV-------------------------KKGDVIATAGFGAGLTWGSAIVR 378 (379)
T ss_pred HHHHHHH---HHcCCC-------------------------CCCCEEEEEEEChhheeeEEEEE
Confidence 6655443 233221 22456777789988887888775
|
|
| >KOG1389 consensus 3-oxoacyl CoA thiolase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.7e-18 Score=159.13 Aligned_cols=242 Identities=23% Similarity=0.367 Sum_probs=169.6
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCCCceeEEEecCCCChhhHHHHHHHHHHhccccCCCcchhhhhhhHHHHHHHHh-cCCC
Q 011989 132 YALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMK-YGFQ 210 (473)
Q Consensus 132 la~~aa~~Al~dAgl~~~~~~~~~~~gvivg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~-lgl~ 210 (473)
|...+.+..+++-+++|..+. -|++|+....... ....|++.+ -|+.
T Consensus 64 Ll~~vl~a~ie~t~~dp~~ig-----di~vG~vL~pg~g---------------------------a~e~R~a~~~ag~P 111 (435)
T KOG1389|consen 64 LLAAVLRAVIEKTNLDPSLIG-----DIVVGTVLAPGSG---------------------------ASECRMAAFYAGFP 111 (435)
T ss_pred HHHHHHHHHHhhcCCCHHHhc-----ceeeeeccCCCcc---------------------------hHHHHHHHHHcCCC
Confidence 445566777899999877665 5788875432211 222344333 3553
Q ss_pred --CCeeeecCCcchHHHHHHHHHHHHHcCCCCEEEEeecCCCcChH--H--------HHHHhh-------hhccc----c
Q 011989 211 --GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDAL--S--------MAGFCK-------SRALT----T 267 (473)
Q Consensus 211 --Gp~~~v~~acasg~~Al~~A~~~I~~G~~d~vlv~g~d~~~~~~--~--------~~~~~~-------~~~~~----~ 267 (473)
-|..+++.-|+||++|+..-+..|+.|.+|+-|..|+|+|.+.. . ...+.. ++..+ .
T Consensus 112 ~tvpv~tvNRqCsSGLqaVadiA~~Ir~G~ydIGla~GvESMt~~~~~g~~g~~~~~~~~~~~A~dCllpmGitsEnva~ 191 (435)
T KOG1389|consen 112 ETVPVRTVNRQCSSGLQAVADIAAKIRAGFYDIGLAAGVESMTTNYPRGWPGSINPRLQKFEKARDCLLPMGITSENVAE 191 (435)
T ss_pred cccchhhhhhhhhhHHHHHHHHHHHHhcCceeeecccchhhhcccCCCCCccccChhhhhhhHHhhcccccccchHHHHH
Confidence 37888999999999999999999999999999999999976542 0 000100 00000 0
Q ss_pred cc---------------------------C----------CCC-----------CCCCcC-------------ccCC---
Q 011989 268 KY---------------------------N----------GTP-----------QEASRP-------------FDCG--- 283 (473)
Q Consensus 268 ~~---------------------------~----------~~~-----------~~~~~p-------------fd~~--- 283 (473)
++ . .++ ++..|| |.++
T Consensus 192 rfgvsR~eqD~~Av~S~kkAa~A~~~G~f~dEIiPv~tkv~D~~g~~k~i~v~~DeGiRp~ttl~~l~klkpvFkkdGtt 271 (435)
T KOG1389|consen 192 RFGVSREEQDEAAVDSHKKAAAATAKGKFKDEIIPVKTKVVDPKGDEKPITVSVDEGIRPNTTLESLAKLKPVFKKDGTT 271 (435)
T ss_pred HhCCChhhhhHHHHHHHHHHHHHhhcCcchhheeeeeeeccCCcCCccceeEecCCCCCCCcchhHHhhcchhhhcCCcc
Confidence 00 0 001 111222 1111
Q ss_pred --CCceeeccceEEEEEccchHHHhcCCeEEEEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEEEEc
Q 011989 284 --RDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYVNAH 361 (473)
Q Consensus 284 --~~G~~~geGaaavvL~~~~~A~~~g~~~~a~i~g~~~~~d~~~~~~~~~~~~~~~~a~~~al~~agl~~~dId~v~~h 361 (473)
.+.--++||+++|+|.+...|.+.|.+++++.+.|.... ..|...+.+...+|.++|+.+||+.+|||++|++
T Consensus 272 TagNsSQvSDGa~aVLLmkRs~A~qlgLPvlgvfr~f~~vG-----v~P~iMGiGPavAIp~alk~aGL~v~did~FEIN 346 (435)
T KOG1389|consen 272 TAGNSSQVSDGAGAVLLMKRSVAMQLGLPVLGVFRDFAAVG-----VPPAIMGIGPAVAIPKALKAAGLEVDDIDLFEIN 346 (435)
T ss_pred ccCchhhcccchhhhhhhhhhhHhhcCCceeEEeeeeeeec-----CCHHHcCCCchhhhHHHHHHcCCcccccceeehh
Confidence 011118999999999999999999999999999887765 3566666677899999999999999999999999
Q ss_pred CCCCCCCCHHHHHHHHHHhhcccCCCCce-eecccc--chhhhHHhHHHHHHHHHHHHHHhC
Q 011989 362 ATSTPLGDTVEATAIRTVFSDHATSGSLA-FSSTKG--AIGHLLGAAGAVEAIFAVLAIHHG 420 (473)
Q Consensus 362 gtgt~~~D~~E~~a~~~~~~~~~~~~~~~-v~s~k~--~~Gh~~~AsG~~~li~~~~~l~~~ 420 (473)
|++|-+.++..+.++.+.. |+...+ .+|||+||+|...++..++-|+++
T Consensus 347 ----------EAFAsQ~~yc~~KL~ld~ekVN~~GGaiAlGHPlGatGAR~VaTlL~emKrr 398 (435)
T KOG1389|consen 347 ----------EAFASQALYCRNKLGLDPEKVNVNGGAIALGHPLGATGARCVATLLHEMKRR 398 (435)
T ss_pred ----------HHHHHHHHHHHHHhCCCHHHcCCCCceeeccCCcCCccHhHHHHHHHHHHhh
Confidence 9999999998765442222 333334 889999999999999999999863
|
|
| >CHL00203 fabH 3-oxoacyl-acyl-carrier-protein synthase 3; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.1e-16 Score=158.26 Aligned_cols=240 Identities=16% Similarity=0.224 Sum_probs=155.9
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCceeEEEecCCCChhhHHHHHHHHHHhccccCCCcchhhhhhhHHHHHHHHhcC
Q 011989 129 FIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYG 208 (473)
Q Consensus 129 ~~~la~~aa~~Al~dAgl~~~~~~~~~~~gvivg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lg 208 (473)
...|+.+|+++||+++|+++++++ .|+++++.... .. ..+..++..+|
T Consensus 51 ~~~la~~A~~~aL~~ag~~~~dId-----~vi~~s~~~~~----------------------~~-----~~~~~v~~~Lg 98 (326)
T CHL00203 51 LTKLAAEAANKALDKAHMDPLEID-----LIILATSTPDD----------------------LF-----GSASQLQAEIG 98 (326)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCC-----EEEEEeCCCCC----------------------CC-----chHHHHHHHhC
Confidence 578999999999999999888887 78887644210 00 11346888899
Q ss_pred CCC-CeeeecCCcchHHHHHHHHHHHHHcCCCCEEEEeecCCCcChHHHHHHhhhhccccccCCCCCCCCcCccCCCCce
Q 011989 209 FQG-PNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDGF 287 (473)
Q Consensus 209 l~G-p~~~v~~acasg~~Al~~A~~~I~~G~~d~vlv~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pfd~~~~G~ 287 (473)
+++ +++.+..+|+|++.||..|.++|++|.++.+||+++|.++... +++...+.+
T Consensus 99 ~~~~~~~~v~~~Casg~~al~~A~~~i~sg~~~~~Lvv~~e~~s~~~------------------------~~~~~~~~~ 154 (326)
T CHL00203 99 ATRAVAFDITAACSGFILALVTATQFIQNGSYKNILVVGADTLSKWI------------------------DWSDRKTCI 154 (326)
T ss_pred CCCCceeeecccchhHHHHHHHHHHHHHcCCCCEEEEEEehhhhCcC------------------------CcccCCceE
Confidence 876 7889999999999999999999999999999999999743211 112223567
Q ss_pred eeccceEEEEEccchHHHhcCCeEEEEEEEEEEecCCCC-----C-------------CCCC-------CCh--------
Q 011989 288 VIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHH-----I-------------TQPH-------IDG-------- 334 (473)
Q Consensus 288 ~~geGaaavvL~~~~~A~~~g~~~~a~i~g~~~~~d~~~-----~-------------~~~~-------~~~-------- 334 (473)
++||||+|+||++.+. . . +.++....++.. . ..|. ..+
T Consensus 155 ~fgDga~A~ll~~~~~---~--~----~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 225 (326)
T CHL00203 155 LFGDGAGAAIIGASYE---N--S----ILGFKLCTDGKLNSHLQLMNKPVNNQSFGTTKLPQGQYQSISMNGKEVYKFAV 225 (326)
T ss_pred EEcceeeEEEEEEcCC---C--C----eEEEEEEEcCCCcceEEecCCCCCcccccccccccCCcceEEECCHHHHHHHH
Confidence 8999999999986432 1 1 112211111110 0 0010 000
Q ss_pred HHHHHHHHHHHHHcCCCCCCccEEEEcCCCCCCCCHHHHHHHHHHhhcccCCCCceeeccccchhhhHHhHHHHHHHHHH
Q 011989 335 KGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAV 414 (473)
Q Consensus 335 ~~~~~a~~~al~~agl~~~dId~v~~hgtgt~~~D~~E~~a~~~~~~~~~~~~~~~v~s~k~~~Gh~~~AsG~~~li~~~ 414 (473)
.....+++++|+++|++++|||++.+|-.+... ..++.+.++... .+++ .+-..+||+.+|+=.+.|..+
T Consensus 226 ~~~~~~i~~~L~~~g~~~~did~~~~hq~~~~~-----~~~~~~~lgl~~--~k~~--~~l~~~Gn~~sasi~~~L~~~- 295 (326)
T CHL00203 226 FQVPAVIIKCLNALNISIDEVDWFILHQANKRI-----LEAIANRLSVPN--SKMI--TNLEKYGNTSAASIPLALDEA- 295 (326)
T ss_pred HHHHHHHHHHHHHcCCCHHHCCEEEECCCCHHH-----HHHHHHHhCCCH--HHhh--hHHHhhCcHHHHHHHHHHHHH-
Confidence 123457899999999999999999999544332 333455554321 1222 233588999888766555433
Q ss_pred HHHHhCccCCCCCCCCCCCCCCCCCCccccCCCCCCcEEEEeccccccceeeEEEe
Q 011989 415 LAIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPISAALSNSFGFGGTNASLLFT 470 (473)
Q Consensus 415 ~~l~~~~ipp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~g~gG~~~~~vl~ 470 (473)
++.+.+. +-..++.-+||.|=+-.++|++
T Consensus 296 --~~~g~~~-------------------------~Gd~vll~~~G~G~s~~~~v~~ 324 (326)
T CHL00203 296 --IQNNKIQ-------------------------PGQIIVLSGFGAGLTWGAIVLK 324 (326)
T ss_pred --HHhCCCC-------------------------CCCEEEEEEEchhhhheEEEEE
Confidence 3443321 2346666688877666666664
|
|
| >KOG1391 consensus Acetyl-CoA acetyltransferase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.1e-17 Score=150.13 Aligned_cols=247 Identities=26% Similarity=0.403 Sum_probs=171.4
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCceeEEEecCCCChhhHHHHHHHHHHhccccCCCcchhhhhhhHHHHHHHHhcC
Q 011989 129 FIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYG 208 (473)
Q Consensus 129 ~~~la~~aa~~Al~dAgl~~~~~~~~~~~gvivg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lg 208 (473)
.++|...|++.||..+++.++.++ -||+|+...... +..+ ++.++....|
T Consensus 28 aTdL~~~AakAAL~aa~v~~e~VD-----~VI~GNV~aSSs-----------------DgIY--------l~RHvGL~~G 77 (396)
T KOG1391|consen 28 ATDLGVVAAKAALKAANVGAEAVD-----HVIMGNVLASSS-----------------DGIY--------LARHVGLRVG 77 (396)
T ss_pred hhhHHHHHHHHHHhhcCCChhhcc-----eEEEeeeeeccC-----------------CceE--------eeeccccccC
Confidence 467788899999999999888776 777776321100 0001 1112322333
Q ss_pred C--CCCeeeecCCcchHHHHHHHHHHHHHcCCCCEEEEeecCCCcChHH---------------------HHHH----hh
Q 011989 209 F--QGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALS---------------------MAGF----CK 261 (473)
Q Consensus 209 l--~Gp~~~v~~acasg~~Al~~A~~~I~~G~~d~vlv~g~d~~~~~~~---------------------~~~~----~~ 261 (473)
+ .-|..+|+.-|.|+.+++-.+++.|.-|+++++|++|+|.|+..+. |..+ .+
T Consensus 78 vP~e~pALtiNRLCGSGFQsiVNgaQ~I~vgea~ivL~GGtEnMSq~Pf~vRnvRFGT~LG~~y~lED~LW~sLtD~y~k 157 (396)
T KOG1391|consen 78 VPKETPALTINRLCGSGFQSIVNGAQEICVGEAEIVLCGGTENMSQAPFCVRNVRFGTKLGSDYKLEDSLWVSLTDQYVK 157 (396)
T ss_pred CcCccCceeehhhhcccHHHHHhhHHHhhcCcceEEEecCccccccCcceeeeeeeccccccccchhhhHhhhccchhhh
Confidence 3 2378999999999999999999999999999999999998764320 0000 00
Q ss_pred ----------------------------hhcccc-----ccCC----------------CCCCCCcCcc-----------
Q 011989 262 ----------------------------SRALTT-----KYNG----------------TPQEASRPFD----------- 281 (473)
Q Consensus 262 ----------------------------~~~~~~-----~~~~----------------~~~~~~~pfd----------- 281 (473)
...+.. .+++ ..++..||-.
T Consensus 158 LpMa~TAEnL~~qyKisRee~DefaL~SQ~~Wkkaq~aG~fn~Ei~pI~~K~kkge~~f~vDEHpRp~TT~E~L~KLppv 237 (396)
T KOG1391|consen 158 LPMAMTAENLAVQYKISREECDEFALQSQQRWKKAQDAGYFNDEIAPIEVKTKKGEQTFQVDEHPRPQTTLEQLQKLPPV 237 (396)
T ss_pred cchhhhHHHhhhhheecHHHhhHHHhhhHHHHHhhhhcCcccccccceEEeeccCceeeEecCCCCccchHHHHhhCCch
Confidence 000000 0000 0122233210
Q ss_pred CCCCcee-------eccceEEEEEccchHHHhcCCeEEEEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCC
Q 011989 282 CGRDGFV-------IGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQ 354 (473)
Q Consensus 282 ~~~~G~~-------~geGaaavvL~~~~~A~~~g~~~~a~i~g~~~~~d~~~~~~~~~~~~~~~~a~~~al~~agl~~~d 354 (473)
-..+|.+ ..|||+|+++.+++..++.+.+|+++|.+|.... ..|...+.+...+|+.+|+.+|++..|
T Consensus 238 FkKdG~VtAGnASGi~DGA~AvivAsEdavK~~NlkPLARiVays~vG-----cdP~IMGIGPvPAI~~vLKksGlkl~D 312 (396)
T KOG1391|consen 238 FKKDGTVTAGNASGIADGAGAVIVASEDAVKKHNLKPLARIVAYSVVG-----CDPSIMGIGPVPAISGVLKKSGLKLKD 312 (396)
T ss_pred hccCCeeeccccccccCCceeEEEechhHHhhcCCchhhhhheeeeec-----cChhhccccCcHHHHHHHHHcCCcccc
Confidence 0123333 7899999999999999999999999999998754 345666667788999999999999999
Q ss_pred ccEEEEcCCCCCCCCHHHHHHHHHHhhcccCCCCc---eeeccccchhhhHHhHHHHHHHHHHHHHHhC
Q 011989 355 VDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSL---AFSSTKGAIGHLLGAAGAVEAIFAVLAIHHG 420 (473)
Q Consensus 355 Id~v~~hgtgt~~~D~~E~~a~~~~~~~~~~~~~~---~v~s~k~~~Gh~~~AsG~~~li~~~~~l~~~ 420 (473)
||.||++ |++|-+.+...+.++.++ .|+...-.+|||+|+||..-....++.|+++
T Consensus 313 iDl~EvN----------EAFApQ~LAv~r~L~ld~sKlNVNGGAIALGHPLgaSGsRIt~HlVHEL~Rr 371 (396)
T KOG1391|consen 313 IDLVEVN----------EAFAPQYLAVERSLDLDISKLNVNGGAIALGHPLGASGSRITAHLVHELRRR 371 (396)
T ss_pred cceEEec----------hhhchHHHHHHHhhCCChhhccccCceeeccCccccCcchhhHHHHHHHHHc
Confidence 9999999 999988877666544333 3333334899999999999888888888763
|
|
| >PRK06840 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.8e-16 Score=156.44 Aligned_cols=243 Identities=17% Similarity=0.156 Sum_probs=154.7
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCCCCCCceeEEEecCCCChhhHHHHHHHHHHhccccCCCcchhhhhhhHHHHHHHHhc
Q 011989 128 RFIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKY 207 (473)
Q Consensus 128 ~~~~la~~aa~~Al~dAgl~~~~~~~~~~~gvivg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~l 207 (473)
....|+.+|+++||+++|+++++++ .+++.++.. +....+..+.+|+..+
T Consensus 52 ~~~~la~~Aa~~aL~~ag~~~~dId-----~li~~~~~~-------------------------~~~~~p~~a~~l~~~l 101 (339)
T PRK06840 52 HTSDMAIAAAKPALKQAGVDPAAID-----VVIYIGSEH-------------------------KDYPVWSSAPKIQHEI 101 (339)
T ss_pred CHHHHHHHHHHHHHHHcCCCHHHCC-----EEEEeccCC-------------------------CCCCCCchHHHHHHHh
Confidence 3678999999999999999888776 666544221 1111223456899999
Q ss_pred CCCC-CeeeecCCcchHHHHHHHHHHHHHc-CCCCEEEEeecCCCcChHHHHHHhhhhccccccCCCCCCCCcCccCCCC
Q 011989 208 GFQG-PNHAAVTACATGAHSIGDAARMIQF-GDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRD 285 (473)
Q Consensus 208 gl~G-p~~~v~~acasg~~Al~~A~~~I~~-G~~d~vlv~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pfd~~~~ 285 (473)
|++. +.+.+..+|++++.||..|.++|++ |.++.+||++.|...... .|+....
T Consensus 102 Gl~~~~~~~v~~~C~~~~~al~~A~~~l~~~g~~~~~Lvv~~~~~s~~~------------------------~~~~~~~ 157 (339)
T PRK06840 102 GAKNAWAFDIMAVCASFPIALKVAKDLLYSDPSIENVLLVGGYRNSDLV------------------------DYDNPRT 157 (339)
T ss_pred CCCCcccccccccchHHHHHHHHHHHHHhcCCCccEEEEEeeccccccc------------------------CcCCCCe
Confidence 9976 7888999999999999999999999 999999999998632211 0111122
Q ss_pred ce--eeccceEEEEEccchHHHhcCCeEEEEEEEEEEecCCCC----------CCCC---C-------------CC----
Q 011989 286 GF--VIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHH----------ITQP---H-------------ID---- 333 (473)
Q Consensus 286 G~--~~geGaaavvL~~~~~A~~~g~~~~a~i~g~~~~~d~~~----------~~~~---~-------------~~---- 333 (473)
.+ .+||||+|+||++.+. +.. |.+....+++.. ...| . ..
T Consensus 158 ~~~~~~GDgAaA~ll~~~~~----~~~----il~~~~~t~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (339)
T PRK06840 158 RFMFNFAAGGSAALLKKDAG----KNR----ILGSAIITDGSFSEDVRVPAGGTKQPASPETVENRQHYLDVIDPESMKE 229 (339)
T ss_pred eeeccCCCceeEEEEEecCC----CCc----eEEEEEEEcCCccceEEecCCCcCCCCcccccccccceEEEcCcHHHHH
Confidence 32 3699999999986432 111 222222222110 0000 0 00
Q ss_pred ------hHHHHHHHHHHHHHcCCCCCCccEEEEcCCCCCCCCHHHHHHHHHHhhcccCCCCceeeccccchhhhHHhHHH
Q 011989 334 ------GKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGA 407 (473)
Q Consensus 334 ------~~~~~~a~~~al~~agl~~~dId~v~~hgtgt~~~D~~E~~a~~~~~~~~~~~~~~~v~s~k~~~Gh~~~AsG~ 407 (473)
.....++++++|+++|++++|||++.+|-.+... ...+.+.++... .+.. ....+||+.+|+=.
T Consensus 230 ~~~~~~~~~~~~~i~~~L~~~gl~~~did~~~~h~~~~~~-----~~~~~~~Lgl~~--~~~~---~~~~~Gn~~sas~~ 299 (339)
T PRK06840 230 RLDEVSIPNFLKVIREALRKSGYTPKDIDYLAILHMKRSA-----HIALLEGLGLTE--EQAI---YLDEYGHLGQLDQI 299 (339)
T ss_pred HhHhhHHHHHHHHHHHHHHHcCCCHHHCCEEEECCcCHHH-----HHHHHHHcCCCH--HHeE---eHHhccchhhhhHH
Confidence 0123478899999999999999999988433222 223444444321 1122 24588999988766
Q ss_pred HHHHHHHHHHHhCccCCCCCCCCCCCCCCCCCCccccCCCCCCcEEEEeccccccceeeEEEe
Q 011989 408 VEAIFAVLAIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPISAALSNSFGFGGTNASLLFT 470 (473)
Q Consensus 408 ~~li~~~~~l~~~~ipp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~g~gG~~~~~vl~ 470 (473)
+.|..+ ++.+.+ .+-..++..+||.|.+..+++|+
T Consensus 300 ~~L~~~---~~~~~~-------------------------~~Gd~ill~~~G~G~s~~~~~l~ 334 (339)
T PRK06840 300 LSLHLA---LEQGKL-------------------------KDGDLVVLVSAGTGYTWAATVIR 334 (339)
T ss_pred HHHHHH---HHcCCC-------------------------CCCCEEEEEEEehhhheeEEEEE
Confidence 655433 333221 12346677799999988888886
|
|
| >TIGR00748 HMG_CoA_syn_Arc hydroxymethylglutaryl-CoA synthase, putative | Back alignment and domain information |
|---|
Probab=99.71 E-value=7.7e-16 Score=153.01 Aligned_cols=240 Identities=19% Similarity=0.194 Sum_probs=154.1
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCCCCCCceeEEEecCCCChhhHHHHHHHHHHhccccCCCcchhhhhhhHHHHHHHHhc
Q 011989 128 RFIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKY 207 (473)
Q Consensus 128 ~~~~la~~aa~~Al~dAgl~~~~~~~~~~~gvivg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~l 207 (473)
....|+++|+++||+++|+++++++ .+++++..+. ...+..+..++..+
T Consensus 49 ~~~~la~~Aa~~aL~~agl~~~dID-----~li~~s~~~~--------------------------~~~p~~a~~v~~~L 97 (345)
T TIGR00748 49 DTATIGVEAARNALKRAKIDPKDIG-----AVYVGSESHP--------------------------YAVKPTATIVAEAI 97 (345)
T ss_pred CHHHHHHHHHHHHHHHcCCCHHHCC-----EEEEEecCCC--------------------------ccccchHHHHHHHc
Confidence 3578999999999999999988887 7777764321 11122345788999
Q ss_pred CCCC--CeeeecCCcchHHHHHHHHHHHHHcCCCCEEEEeecCCCcChHHHHHHhhhhccccccCCCCCCCCcCccCCCC
Q 011989 208 GFQG--PNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRD 285 (473)
Q Consensus 208 gl~G--p~~~v~~acasg~~Al~~A~~~I~~G~~d~vlv~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pfd~~~~ 285 (473)
|++. +.+.+..+|++++.||..|..+|++|.++.+||+++|.+... +. +..
T Consensus 98 Gl~~~~~~~dv~~aC~g~~~al~~A~~~i~sg~~~~vLVv~~d~~~~~-------------------~~--------~~~ 150 (345)
T TIGR00748 98 GATPDLTAADLEFACKAGTAGIQACMGLVASGMIKYGLAIGADTAQGA-------------------PG--------DAL 150 (345)
T ss_pred CCCCCceEEEHHHhHHHHHHHHHHHHHHHHcCCCCEEEEEEEeecccC-------------------CC--------ccC
Confidence 9863 788899999999999999999999999999999999974210 00 111
Q ss_pred ceeeccceEEEEEccchHHHhcCCeEEEEEEEEE-EecCCCC---C-CC--C------CC---ChHHHHHHHHHHHHHcC
Q 011989 286 GFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYG-MSGDAHH---I-TQ--P------HI---DGKGAILAMTRALKQSG 349 (473)
Q Consensus 286 G~~~geGaaavvL~~~~~A~~~g~~~~a~i~g~~-~~~d~~~---~-~~--~------~~---~~~~~~~a~~~al~~ag 349 (473)
-+..||||+|+||++.+.. ..+.+.. ...|+.. . .. + .. .......+++++|+++|
T Consensus 151 ~~~~GDGAaA~vl~~~~~~--------~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~g 222 (345)
T TIGR00748 151 EYTAGAGGAAYIIGEKNTV--------AYFEGTYSYTTDTPDFWRREGEPYPRHGGRFTGEPAYFHHVVTAAKGLMEKLG 222 (345)
T ss_pred cccCCCceEEEEEccCCcc--------eEeecccceecccccccccCCCcCCCcCCeecChHHHHHHHHHHHHHHHHHcC
Confidence 2457999999999864311 1222211 1111110 0 00 1 00 01223367889999999
Q ss_pred CCCCCccEEEEcCCCCCCCCHHHHHHHHHHhhcccCCCCceeeccccchhhhHHhHHHHHHHHHHHHHHhCccCCCCCCC
Q 011989 350 LQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLAIHHGVAPLTLNLA 429 (473)
Q Consensus 350 l~~~dId~v~~hgtgt~~~D~~E~~a~~~~~~~~~~~~~~~v~s~k~~~Gh~~~AsG~~~li~~~~~l~~~~ipp~~~~~ 429 (473)
++++|||++.+|-.+. .+ ...+.+.++... .+++.+-.-..+||+.+|+=.+.|...+.. +
T Consensus 223 l~~~did~~i~Hq~~~----~~-~~~~~~~lgl~~--ek~~~~~~~~~~GNt~sAsipl~L~~~~~~-----~------- 283 (345)
T TIGR00748 223 LTPEDFDYAVFHQPNG----KF-YLVAARMLGFPK--EQVKPGLLTPRIGNTYSGATPVGLSAVLDI-----A------- 283 (345)
T ss_pred CCHHHcCEEEeCCCCh----HH-HHHHHHHcCCCH--HHeeccccccccCchhhhHHHHHHHHHHHh-----c-------
Confidence 9999999999994332 21 222344444321 122222122579999988877766554321 1
Q ss_pred CCCCCCCCCCCccccCCCCCCcEEEEeccccccceeeEEEe
Q 011989 430 KPDPIFNDNFMPLTASKDMPISAALSNSFGFGGTNASLLFT 470 (473)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~~~~~l~~s~g~gG~~~~~vl~ 470 (473)
.+-..++..+||-|-+..+++++
T Consensus 284 ------------------~~Gd~vll~~~G~G~s~~~~~~~ 306 (345)
T TIGR00748 284 ------------------EPGDRILAVSYGSGAGSDAFSIV 306 (345)
T ss_pred ------------------CCCCEEEEEEecCCcceeEEEEE
Confidence 01235667788888887888774
|
Thus, although there is no experimental evidence supporting this name, the bioinformatics-based conclusion appears to be sound. |
| >PRK05963 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed | Back alignment and domain information |
|---|
Probab=99.70 E-value=6.8e-16 Score=152.83 Aligned_cols=242 Identities=16% Similarity=0.134 Sum_probs=154.1
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCceeEEEecCCCChhhHHHHHHHHHHhccccCCCcchhhhhhhHHHHHHHHhcC
Q 011989 129 FIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYG 208 (473)
Q Consensus 129 ~~~la~~aa~~Al~dAgl~~~~~~~~~~~gvivg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lg 208 (473)
...|+.+|+++||+++|+++++++ .|+++++.+ .+..+..+.+|+..||
T Consensus 52 ~~~la~~Aa~~aL~~ag~~~~~Id-----~li~~t~~~--------------------------d~~~p~~a~~v~~~Lg 100 (326)
T PRK05963 52 LSDLAASAGDMALSDAGIERSDIA-----LTLLATSTP--------------------------DHLLPPSAPLLAHRLG 100 (326)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCC-----EEEEECCCC--------------------------CCCCCcHHHHHHHHhC
Confidence 578999999999999999888887 777777542 1222345668999999
Q ss_pred CCC-CeeeecCCcchHHHHHHHHHHHHHcCCCCEEEEeecCCCcChHHHHHHhhhhccccccCCCCCCCCcCccCCCCce
Q 011989 209 FQG-PNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDGF 287 (473)
Q Consensus 209 l~G-p~~~v~~acasg~~Al~~A~~~I~~G~~d~vlv~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pfd~~~~G~ 287 (473)
++. +++.+..+|++++.||..|..+|+++. +.+||+++|.+.... . .+.....+
T Consensus 101 ~~~~~~~di~~~C~g~~~aL~~A~~~l~~~~-~~aLVv~~d~~s~~~-----------------------~-~~~~~~~~ 155 (326)
T PRK05963 101 LQNSGAIDLAGACAGFLYALVLADGFVRAQG-KPVLVVAANILSRRI-----------------------N-MAERASAV 155 (326)
T ss_pred CCCCceeeccchhhHHHHHHHHHHHHHHcCC-CeEEEEEechhhccC-----------------------C-ccccCceE
Confidence 965 888999999999999999999999985 899999999632110 0 11123578
Q ss_pred eeccceEEEEEccchHHHhcCCeEEEEEEEEEEecCCCC----------CCCC--------C-----CC--------hHH
Q 011989 288 VIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHH----------ITQP--------H-----ID--------GKG 336 (473)
Q Consensus 288 ~~geGaaavvL~~~~~A~~~g~~~~a~i~g~~~~~d~~~----------~~~~--------~-----~~--------~~~ 336 (473)
++||||+|+||++.+.. ...+ .+....+++.. ...| . .. ...
T Consensus 156 lfGDgA~A~ll~~~~~~---~~~~----l~~~~~t~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (326)
T PRK05963 156 LFADAAGAVVLAPSAKA---NSGV----LGSQLISDGSHYDLIKIPAGGSARPFAPERDASEFLMTMQDGRAVFTEAVRM 228 (326)
T ss_pred EEeecceEEEEEecCCC---CCce----EEEEEEEcCCCCCeEEeCCCCcCCCCcccccccccceEecCCHHHHHHHHHH
Confidence 89999999999864421 0111 11111111110 0000 0 00 122
Q ss_pred HHHHHHHHHHHcCCCCCCccEEEEcCCCCCCCCHHHHHHHHHHhhcccCCCCceeeccccchhhhHHhHHHHHHHHHHHH
Q 011989 337 AILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLA 416 (473)
Q Consensus 337 ~~~a~~~al~~agl~~~dId~v~~hgtgt~~~D~~E~~a~~~~~~~~~~~~~~~v~s~k~~~Gh~~~AsG~~~li~~~~~ 416 (473)
..++++++|+++|++++|||++.+|-.+. .+ ...+.+.++... .++ + ..-..+||+.+|+=.+.|- +.
T Consensus 229 ~~~~~~~~L~~~gl~~~did~~~~h~~~~----~~-~~~~~~~l~l~~--~k~-~-~~l~~~Gn~~sas~~~~L~---~~ 296 (326)
T PRK05963 229 MSGASQNVLASAAMTPQDIDRFFPHQANA----RI-VDKVCETIGIPR--AKA-A-STLETYGNSSAATIPLSLS---LA 296 (326)
T ss_pred HHHHHHHHHHHcCCCHHHCCEEEeCCCCH----HH-HHHHHHHcCCCH--HHh-h-hhHHhhCcHHHHHHHHHHH---HH
Confidence 34678899999999999999999994432 22 222333333221 111 1 2235889987776554442 22
Q ss_pred HHhCccCCCCCCCCCCCCCCCCCCccccCCCCCCcEEEEeccccccceeeEEEe
Q 011989 417 IHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPISAALSNSFGFGGTNASLLFT 470 (473)
Q Consensus 417 l~~~~ipp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~g~gG~~~~~vl~ 470 (473)
++.+.+ .+-+.++.-+||.|-+-.++||+
T Consensus 297 ~~~~~~-------------------------~~Gd~vll~~~G~G~~~~~~ll~ 325 (326)
T PRK05963 297 NLEQPL-------------------------REGERLLFAAAGAGMTGGAVVMR 325 (326)
T ss_pred HHhCCC-------------------------CCCCEEEEEEEehhhhheeeEEe
Confidence 333221 12356777789988887888875
|
|
| >PRK04262 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.3e-15 Score=149.99 Aligned_cols=240 Identities=19% Similarity=0.201 Sum_probs=153.3
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCCCCCCceeEEEecCCCChhhHHHHHHHHHHhccccCCCcchhhhhhhHHHHHHHHhc
Q 011989 128 RFIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKY 207 (473)
Q Consensus 128 ~~~~la~~aa~~Al~dAgl~~~~~~~~~~~gvivg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~l 207 (473)
....|+.+|+++||++||+++++++ .+++++..+.. ..+..+.+++..+
T Consensus 50 ~~~~la~~Aa~~aL~~ag~~~~dId-----~li~~s~~~~~--------------------------~~p~~a~~v~~~L 98 (347)
T PRK04262 50 DTATIAVEAARNALKRAGIDPKEIG-----AVYVGSESHPY--------------------------AVKPTATIVAEAL 98 (347)
T ss_pred CHHHHHHHHHHHHHHHcCCCHHHCC-----EEEEEecCCCc--------------------------ccccHHHHHHHHc
Confidence 3578999999999999999888887 77777643221 1122345788999
Q ss_pred CCCC--CeeeecCCcchHHHHHHHHHHHHHcCCCCEEEEeecCCCcChHHHHHHhhhhccccccCCCCCCCCcCccCCCC
Q 011989 208 GFQG--PNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRD 285 (473)
Q Consensus 208 gl~G--p~~~v~~acasg~~Al~~A~~~I~~G~~d~vlv~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pfd~~~~ 285 (473)
|++. +.+.+..+|++++.+|..|..+|++|.++.+||+++|..... +.. ..
T Consensus 99 gl~~~~~~~dv~~~C~~~~~aL~~A~~~i~sg~~~~aLVv~~e~~~~~-------------------~~~--------~~ 151 (347)
T PRK04262 99 GATPDLTAADLEFACKAGTAALQAAMGLVKSGMIKYALAIGADTAQGA-------------------PGD--------AL 151 (347)
T ss_pred CCCCCceEEEHHHhHHHHHHHHHHHHHHHHcCCCCEEEEEEEeeeccC-------------------CCC--------CC
Confidence 9964 678899999999999999999999999999999999962100 000 11
Q ss_pred ceeeccceEEEEEccchHHHhcCCeEEEEEEEEE-EecCCCC-CC-----CC----CC-----ChHHHHHHHHHHHHHcC
Q 011989 286 GFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYG-MSGDAHH-IT-----QP----HI-----DGKGAILAMTRALKQSG 349 (473)
Q Consensus 286 G~~~geGaaavvL~~~~~A~~~g~~~~a~i~g~~-~~~d~~~-~~-----~~----~~-----~~~~~~~a~~~al~~ag 349 (473)
-+..||||+|+||+..+. . .+|.+.. ...|... +. .+ .. .......+++++|+++|
T Consensus 152 ~~~~GDGA~A~ll~~~~~----~----~~i~~~~~~~~d~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~g 223 (347)
T PRK04262 152 EYTAAAGGAAFIIGKEEV----I----AEIEATYSYTTDTPDFWRREGEPYPRHGGRFTGEPAYFKHIISAAKGLMEKLG 223 (347)
T ss_pred CCcCCCCcEEEEEecCcc----c----ceeeccccccccchhhcCCCCCcCCCcCceecchHHHHHHHHHHHHHHHHHhC
Confidence 133599999999986331 1 2233221 1112110 00 01 00 11345578899999999
Q ss_pred CCCCCccEEEEcCCCCCCCCHHHHHHHHHHhhcccCCCCceeeccccchhhhHHhHHHHHHHHHHHHHHhCccCCCCCCC
Q 011989 350 LQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLAIHHGVAPLTLNLA 429 (473)
Q Consensus 350 l~~~dId~v~~hgtgt~~~D~~E~~a~~~~~~~~~~~~~~~v~s~k~~~Gh~~~AsG~~~li~~~~~l~~~~ipp~~~~~ 429 (473)
++++|||++.+|-.+....+ .+.+.++... .++..+.+-..+||+.+|+=.+.|..++. . +
T Consensus 224 l~~~dId~~v~Hq~n~~~~~-----~~~~~Lgl~~--ek~~~~~~~~~~GNt~sAsi~~~L~~~~~---~--~------- 284 (347)
T PRK04262 224 LKPSDYDYAVFHQPNGKFPL-----RVAKMLGFTK--EQVKPGLLTPYIGNTYSGSALLGLAAVLD---V--A------- 284 (347)
T ss_pred cCHHHhceeecCCCchHHHH-----HHHHHcCCCH--HHhhccchhhhhCChHHHHHHHHHHHHHH---h--C-------
Confidence 99999999999944333222 2333333221 12322223478999999987766654432 1 1
Q ss_pred CCCCCCCCCCCccccCCCCCCcEEEEeccccccceeeEEEe
Q 011989 430 KPDPIFNDNFMPLTASKDMPISAALSNSFGFGGTNASLLFT 470 (473)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~~~~~l~~s~g~gG~~~~~vl~ 470 (473)
.+...++..+||-|-+...++++
T Consensus 285 ------------------~~Gd~vll~~~G~G~~~~~~~~~ 307 (347)
T PRK04262 285 ------------------KPGDRILVVSFGSGAGSDAFSIT 307 (347)
T ss_pred ------------------CCCCEEEEEecCCCcceeeEEEE
Confidence 01246677788887776666664
|
|
| >COG0183 PaaJ Acetyl-CoA acetyltransferase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.5e-16 Score=160.10 Aligned_cols=206 Identities=27% Similarity=0.381 Sum_probs=132.7
Q ss_pred hHHHHHHHHhcCCCC--CeeeecCCcchHHHHHHHHHHHHHcCCCCEEEEeecCCCcChHHH-HH---Hh--------h-
Q 011989 197 NMASGHVSMKYGFQG--PNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSM-AG---FC--------K- 261 (473)
Q Consensus 197 ~~~a~~ia~~lgl~G--p~~~v~~acasg~~Al~~A~~~I~~G~~d~vlv~g~d~~~~~~~~-~~---~~--------~- 261 (473)
..++..++...|+.. |.++|+.+|+||+.|+..|++.|++|.+|++|++|+|++++.... .. .. .
T Consensus 67 ~~~ar~~a~~aGl~~~~p~~~V~~~c~SG~~Av~~A~~~I~sG~~dvvlagG~E~mS~~~~~~~~~~~~~~~~d~~~~~~ 146 (392)
T COG0183 67 QNIARQAALAAGLPGSVPAVTVNRACASGLAAVRLAAQAIASGEADVVLAGGVEKMSDAPMGREGVRVLDSAVDPMFEDP 146 (392)
T ss_pred ccHHHHHHHHcCCCCCCCceEEeccchhHHHHHHHHHHHHHCCCCCEEEEEeeeeccCCCccccchhhhhhhhhhccccc
Confidence 345567888899986 999999999999999999999999999999999999998765420 00 00 0
Q ss_pred ---------hhc----cccccCC-----------------------C-----CCC-CCcCccC----CCCceeeccceEE
Q 011989 262 ---------SRA----LTTKYNG-----------------------T-----PQE-ASRPFDC----GRDGFVIGEGSGV 295 (473)
Q Consensus 262 ---------~~~----~~~~~~~-----------------------~-----~~~-~~~pfd~----~~~G~~~geGaaa 295 (473)
.+. +..+|+- . +.. ...++.. +.+-....||+++
T Consensus 147 ~~~~~~~~~~g~~A~~~~~~yGitre~~d~~Av~sh~~A~~np~a~~~~eI~~~~v~~~~~~~dp~~r~d~~~~~dg~a~ 226 (392)
T COG0183 147 LGDATPGYLMGLTAERYAKRYGISREDQDEVAVKSHKNAAANPKAGFFDEITPEDVLNSPVVADPLRRLDCSPTSDGAAA 226 (392)
T ss_pred cccccchhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhHhcCCCCceeeEEecCCceecCCcccCCCCCChhhhcC
Confidence 000 0000000 0 000 0112211 1122246777777
Q ss_pred EEEccchHH--------------------------HhcCCeEEEEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHHcC
Q 011989 296 LVLEELEHA--------------------------KKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSG 349 (473)
Q Consensus 296 vvL~~~~~A--------------------------~~~g~~~~a~i~g~~~~~d~~~~~~~~~~~~~~~~a~~~al~~ag 349 (473)
+++..++.+ ..++..+.++++++.... ..|... .....+++++|+.++
T Consensus 227 l~~a~~~~~g~~tagnas~i~dga~a~~~~~~~~~~~~~l~~~A~~~a~~~aG-----v~p~~~-~~~v~av~~~~~~~~ 300 (392)
T COG0183 227 LVPAFEEVGGTVTAGNASGINDGAAALLLMSESKAKELGLAPLAAIRAYAMAG-----VDPSIM-DGPVAAVHDALTIAG 300 (392)
T ss_pred ceeccccCCceEEEecccccccHHHHHHHhhHHHHHHCCCcHHHHHHHHHHhC-----CCcccc-cCCHHHHHHHHHHcC
Confidence 777765431 122222222222211111 011111 233567899999999
Q ss_pred CC-CCCccEEEEcCCCCCCCCHHHHHHHHHHhhcccCCCCceeecccc--chhhhHHhHHHHHHHHHHHHHHh
Q 011989 350 LQ-SHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKG--AIGHLLGAAGAVEAIFAVLAIHH 419 (473)
Q Consensus 350 l~-~~dId~v~~hgtgt~~~D~~E~~a~~~~~~~~~~~~~~~v~s~k~--~~Gh~~~AsG~~~li~~~~~l~~ 419 (473)
+. .+|||+++.+ |.++.......+.. +..+||...+ .+|||+||+|+..+..++++|++
T Consensus 301 l~~~edlgl~e~n----------Eafa~~~~~~~~~~-G~~~VN~~GGaiA~GHPiGAtG~~~~~~l~~ql~~ 362 (392)
T COG0183 301 LLALEDLGLAEKG----------EAFAAVALGVTKIL-GDLPVNPSGGAIALGHPIGATGARILVELARQLRG 362 (392)
T ss_pred CchhhhcCceecC----------hHHHHHHHhhHHhc-CCceeCCCcchhhcCCCccchHHHHHHHHHHHHhh
Confidence 99 9999999999 99998887665443 3478887777 77999999999999999999997
|
|
| >PRK12880 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed | Back alignment and domain information |
|---|
Probab=99.64 E-value=6.9e-15 Score=146.40 Aligned_cols=214 Identities=11% Similarity=0.051 Sum_probs=137.3
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCCCCCCceeEEEecCCCChhhHHHHHHHHHHhccccCCCcchhhhhhhHHHHHHHHhc
Q 011989 128 RFIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKY 207 (473)
Q Consensus 128 ~~~~la~~aa~~Al~dAgl~~~~~~~~~~~gvivg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~l 207 (473)
....|+.+|+++||+++|+++++++ .||++++++ .+..+..+.+|+..|
T Consensus 59 ~~~~la~~Aa~~aL~~a~~~~~dId-----~lI~~t~t~--------------------------d~~~P~~a~~v~~~L 107 (353)
T PRK12880 59 CVSDLGKHAANTLLQGLNIDKNSLD-----ALIVVTQSP--------------------------DFFMPSTACYLHQLL 107 (353)
T ss_pred CHHHHHHHHHHHHHHHcCCCHHHCC-----EEEEEcCCC--------------------------CCCCCcHHHHHHHHh
Confidence 4678999999999999999888887 778877542 334567788999999
Q ss_pred CCCC--CeeeecCCcchHHHHHHHHHHHHHcCCCCEEEEeecCCCcChHHHHHHhhhhccccccCCCCCCCCcCccCCCC
Q 011989 208 GFQG--PNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRD 285 (473)
Q Consensus 208 gl~G--p~~~v~~acasg~~Al~~A~~~I~~G~~d~vlv~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pfd~~~~ 285 (473)
|++. +++.|..+|++++.+|..|..+|++|..+ +||+++|.++... . ++....
T Consensus 108 g~~~~~~~~di~~~C~g~~~aL~~A~~~i~~~~~~-~LVv~~e~~S~~~-----------------------~-~~d~~~ 162 (353)
T PRK12880 108 NLSSKTIAFDLGQACAGYLYGLFVAHSLIQSGLGK-ILLICGDTLSKFI-----------------------H-PKNMNL 162 (353)
T ss_pred CCCCCceEEehhhhhHHHHHHHHHHHHHHHcCCCC-EEEEEehhhhccC-----------------------C-cccCCc
Confidence 9963 67899999999999999999999999999 9999888632111 0 111223
Q ss_pred ceeeccceEEEEEccchHHHhcCCeEEEEEEEEEEec------CC------CCCC--C----C---------CCChH---
Q 011989 286 GFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSG------DA------HHIT--Q----P---------HIDGK--- 335 (473)
Q Consensus 286 G~~~geGaaavvL~~~~~A~~~g~~~~a~i~g~~~~~------d~------~~~~--~----~---------~~~~~--- 335 (473)
..++||||+|+||++.+.. .+ + ..+...+... .+ .... . + ...+.
T Consensus 163 ~~lFGDGAaA~vl~~~~~~--~~--~-~~~~~~~~~~~~~~~p~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~ 237 (353)
T PRK12880 163 APIFGDGVSATLIEKTDFN--EA--F-FELGSDGKYFDKLIIPKGAMRIPKADIFNDDSLMQTEEFRQLENLYMDGANIF 237 (353)
T ss_pred eeeecccceEEEEEecCCC--Cc--e-EEEEecCCCCCeEEecCCCcCCCccccccccccccccccccCceEEEcCHHHH
Confidence 5689999999999854321 11 1 1111111000 00 0000 0 0 01111
Q ss_pred -----HHHHHHHHHHHHcCCCCCCccEEEEcCCCCCCCCHHHHHHHHHHhhcccCCCCceeeccccchhhhHHhHHHHHH
Q 011989 336 -----GAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEA 410 (473)
Q Consensus 336 -----~~~~a~~~al~~agl~~~dId~v~~hgtgt~~~D~~E~~a~~~~~~~~~~~~~~~v~s~k~~~Gh~~~AsG~~~l 410 (473)
....+++++|+++|++++|||++.+|-.+-. -...+.+.++... .+++ ..+-..+|++.+|+=.+.|
T Consensus 238 ~~~~~~~~~~i~~~L~~~gl~~~did~~v~HQ~~~~-----i~~~i~~~Lgl~~--ek~~-~~~l~~~GNtssasip~~L 309 (353)
T PRK12880 238 NMALECEPKSFKEILEFSKVDEKDIAFHLFHQSNAY-----LVDCIKEELKLND--DKVP-NFIMEKYANLSACSLPALL 309 (353)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHCCEEEECCCCHH-----HHHHHHHHhCCCH--HHhh-hhhHHhhCCHHHHHHHHHH
Confidence 1235789999999999999999999943322 2334444444321 1221 1222457887766644433
|
|
| >cd00827 init_cond_enzymes "initiating" condensing enzymes are a subclass of decarboxylating condensing enzymes, including beta-ketoacyl [ACP] synthase, type III and polyketide synthases, type III, which include chalcone synthase and related enzymes | Back alignment and domain information |
|---|
Probab=99.63 E-value=7.5e-15 Score=145.27 Aligned_cols=243 Identities=16% Similarity=0.138 Sum_probs=156.3
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCceeEEEecCCCChhhHHHHHHHHHHhccccCCCcchhhhhhhHHHHHHHHhcC
Q 011989 129 FIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYG 208 (473)
Q Consensus 129 ~~~la~~aa~~Al~dAgl~~~~~~~~~~~gvivg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lg 208 (473)
...|+.+|+++||+++|+++++++ .|++++..... .....+.+++..+|
T Consensus 48 ~~~l~~~a~~~aL~~ag~~~~~Id-----~li~~~~~~~~--------------------------~~~~~~~~i~~~lg 96 (324)
T cd00827 48 VPTMAVEAARRALERAGIDPDDIG-----LLIVATESPID--------------------------KGKSAATYLAELLG 96 (324)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCC-----EEEEEcCCCCC--------------------------CCccHHHHHHHHcC
Confidence 578999999999999999888887 78887754211 02235567899999
Q ss_pred CC-CCeeeecCCcchHHHHHHHHHHHHHcCCCCEEEEeecCCCcChHHHHHHhhhhccccccCCCCCCCCcCccCCCCce
Q 011989 209 FQ-GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDGF 287 (473)
Q Consensus 209 l~-Gp~~~v~~acasg~~Al~~A~~~I~~G~~d~vlv~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pfd~~~~G~ 287 (473)
++ .+.+++..+|+|++.||..|.++|++|.++.+||+++|.+.... ...+..++
T Consensus 97 ~~~~~~~~v~~~C~s~~~al~~A~~~i~~g~~~~vlvv~~e~~~~~~-------------------------~~~~~~~~ 151 (324)
T cd00827 97 LTNAEAFDLKQACYGGTAALQLAANLVESGPWRYALVVASDIASYLL-------------------------DEGSALEP 151 (324)
T ss_pred CCCCceeehhhhhHHHHHHHHHHHHHHHcCCCCEEEEEEEHHhhhcc-------------------------cCCCCccc
Confidence 95 58999999999999999999999999999999999999743321 12345788
Q ss_pred eeccceEEEEEccchHHHhcCCeEEEEEEEEEEecCCC---------CCCC-------------CCC--------ChHHH
Q 011989 288 VIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAH---------HITQ-------------PHI--------DGKGA 337 (473)
Q Consensus 288 ~~geGaaavvL~~~~~A~~~g~~~~a~i~g~~~~~d~~---------~~~~-------------~~~--------~~~~~ 337 (473)
++|||++|+||++.+... ... |......+++. .... .+. .....
T Consensus 152 ~~gdgaaA~ll~~~~~~~--~~~----i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (324)
T cd00827 152 TLGDGAAAMLVSRNPGIL--AAG----IVSTHSTSDPGYDFSPYPVMDGGYPKPCKLAYAIRLTAEPAGRAVFEAAHKLI 225 (324)
T ss_pred cccCceEEEEEecCcccc--cCC----ceeeeeecccccccCccceeccCCCcchhhhhhcceeecCCccchHHHHhHHH
Confidence 999999999999765420 111 12111111110 0000 110 11334
Q ss_pred HHHHHHHHHHcCCCCCCccEEEEcCCCCCCCCHHHHHHHHHHhhcccCCCCceee--ccccchhhhHHhHHHHHHHHHHH
Q 011989 338 ILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFS--STKGAIGHLLGAAGAVEAIFAVL 415 (473)
Q Consensus 338 ~~a~~~al~~agl~~~dId~v~~hgtgt~~~D~~E~~a~~~~~~~~~~~~~~~v~--s~k~~~Gh~~~AsG~~~li~~~~ 415 (473)
..+++++|++.+++ +||+++.+|-.+.+ .+- ..+.+.++... .++... ..-..+||+.+|+-.+.|-.+
T Consensus 226 ~~~~~~~l~~~~~~-~~i~~~~~h~~~~~---~~~-~~~~~~l~~~~--~~~~~~~~~~~~~~Gn~~sa~~~~~L~~~-- 296 (324)
T cd00827 226 AKVVRKALDRAGLS-EDIDYFVPHQPNGK---KIL-EAVAKKLGGPP--EKASQTRWILLRRVGNMYAASILLGLASL-- 296 (324)
T ss_pred HHHHHHHHHHcccc-cccceeeccCchHH---HHH-HHHHHHccchH--hhhccchhhHHHHhCchHHHHHHHHHHHH--
Confidence 57888999999999 99999999954431 111 11222222110 012222 245688998888766655443
Q ss_pred HHHhCccCCCCCCCCCCCCCCCCCCccccCCCCCCcEEEEeccccccceeeEE
Q 011989 416 AIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPISAALSNSFGFGGTNASLL 468 (473)
Q Consensus 416 ~l~~~~ipp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~g~gG~~~~~v 468 (473)
++.+.+ .+.+.++.-++|.|-...+++
T Consensus 297 -~~~~~~-------------------------~~Gd~vl~~~~G~G~~~~~~~ 323 (324)
T cd00827 297 -LESGKL-------------------------KAGDRVLLFSYGSGFTAEAFV 323 (324)
T ss_pred -HhcCCC-------------------------CCCCEEEEEEeccchhheecc
Confidence 333221 134566777888877655544
|
They are characterized by the utlization of CoA substrate primers, as well as the nature of their active site residues. |
| >KOG1392 consensus Acetyl-CoA acetyltransferase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.8e-15 Score=137.97 Aligned_cols=269 Identities=20% Similarity=0.251 Sum_probs=178.1
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCCceeEEEecCCCChhhHHHHHHHHHHhccccCCCcchhhhhhhHHHHHHHHhcCC
Q 011989 130 IAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYGF 209 (473)
Q Consensus 130 ~~la~~aa~~Al~dAgl~~~~~~~~~~~gvivg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lgl 209 (473)
..|+-++....|+.-.+..+.++ -+|+|+.. +..-.+.++...+..-|+
T Consensus 67 hdlar~al~~ll~kt~lpke~~d-----yii~gtvi--------------------------qevktsniareaal~agf 115 (465)
T KOG1392|consen 67 HDLAREALKALLEKTKLPKEQLD-----YIICGTVI--------------------------QEVKTSNIAREAALLAGF 115 (465)
T ss_pred hHHHHHHHHHHHHhccCCHHHhc-----eeeehhhH--------------------------HHHhcchHHHHHHHhcCC
Confidence 35666677777888887655555 67777632 111122334444444455
Q ss_pred --CCCeeeecCCcchHHHHHHHHHHHHHcCCCCEEEEeecCCCcChHHHHHHhhhhc----------------cccc---
Q 011989 210 --QGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRA----------------LTTK--- 268 (473)
Q Consensus 210 --~Gp~~~v~~acasg~~Al~~A~~~I~~G~~d~vlv~g~d~~~~~~~~~~~~~~~~----------------~~~~--- 268 (473)
+-|..++..+|-|+.+|+..++.+|..|.+|+++.+|+|.+++.+....-..... .++.
T Consensus 116 sdktpahtvtmacissn~amttgmgliatg~~dvivaggvelmsdvpirhsrkmrklml~~nkak~~gqrl~l~s~fr~n 195 (465)
T KOG1392|consen 116 SDKTPAHTVTMACISSNVAMTTGMGLIATGNADVIVAGGVELMSDVPIRHSRKMRKLMLGMNKAKDVGQRLKLGSQFRKN 195 (465)
T ss_pred CCCCccceeeeehhccchhhhccceeEeeCCcCEEEEcceeecccCchhhhHHHHHHhhccccccchhhhhhHHhhhhhh
Confidence 4599999999999999999999999999999999999998765331110000000 0000
Q ss_pred --------------------------------------c------------CCCC-------------------------
Q 011989 269 --------------------------------------Y------------NGTP------------------------- 273 (473)
Q Consensus 269 --------------------------------------~------------~~~~------------------------- 273 (473)
| ....
T Consensus 196 flapelpavaefstgetmghsadrlaaafnvsr~eqdeyalrshtlakeaq~~g~ftdvvpfkv~gkd~~t~kdngirvs 275 (465)
T KOG1392|consen 196 FLAPELPAVAEFSTGETMGHSADRLAAAFNVSRREQDEYALRSHTLAKEAQKNGKFTDVVPFKVDGKDPKTIKDNGIRVS 275 (465)
T ss_pred ccCcCcchheeccccccccccHHHHHHHhccchhhhhHHHHhhhHHHHHHHhcCcccceeeEecCCCCcceecCCCcccC
Confidence 0 0000
Q ss_pred ---------CCCCcCccC--CCCceeeccceEEEEEccchHHHhcCCeEEEEEEEEEE-ecCCCCCCCCCCChHHHHHHH
Q 011989 274 ---------QEASRPFDC--GRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGM-SGDAHHITQPHIDGKGAILAM 341 (473)
Q Consensus 274 ---------~~~~~pfd~--~~~G~~~geGaaavvL~~~~~A~~~g~~~~a~i~g~~~-~~d~~~~~~~~~~~~~~~~a~ 341 (473)
..-.+||.. .++.-.+.||+.|.++..+|.|.+.|-+|.++++.+-. ++|+.. ...-+....+
T Consensus 276 sle~laklkpafvkpygtvtaanasfltdgasa~limteekala~gykpkaylrdflyvsqdpkd-----qlllgpay~i 350 (465)
T KOG1392|consen 276 SLEKLAKLKPAFVKPYGTVTAANASFLTDGASAALIMTEEKALANGYKPKAYLRDFLYVSQDPKD-----QLLLGPAYVI 350 (465)
T ss_pred CHHHHhhcCchhccCcceeEecccchhcCcchhhhhhhHHHHHHcCCCchHHhhhheeeccCchh-----heeccccccc
Confidence 000122221 12333389999999999999999999999999998865 444332 1112335678
Q ss_pred HHHHHHcCCCCCCccEEEEcCCCCCCCCHHHHHHHHHHhhcccCC---------------CCcee---e--ccccchhhh
Q 011989 342 TRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATS---------------GSLAF---S--STKGAIGHL 401 (473)
Q Consensus 342 ~~al~~agl~~~dId~v~~hgtgt~~~D~~E~~a~~~~~~~~~~~---------------~~~~v---~--s~k~~~Gh~ 401 (473)
.+.|+++|++..|||.+|+| |+++-+-+......+ +..|+ + ...-.+|||
T Consensus 351 pkll~kagltlkdid~feih----------eafagqilanlkamdsdwfck~ymgr~~kvg~ppl~k~nnwggslsighp 420 (465)
T KOG1392|consen 351 PKLLDKAGLTLKDIDVFEIH----------EAFAGQILANLKAMDSDWFCKEYMGRSGKVGRPPLDKLNNWGGSLSIGHP 420 (465)
T ss_pred HHHHHHcCCcccccchhhhH----------HHHhHHHHhhhhhhcchHHHHHHhcccCccCCCChHHhcccCcceecCCc
Confidence 89999999999999999999 888755443221111 22232 2 222389999
Q ss_pred HHhHHHHHHHHHHHHHHhCccCCCCCCCCCCCCCCCCCCccccCCCCCCcEEEEeccccccceeeEEEeec
Q 011989 402 LGAAGAVEAIFAVLAIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPISAALSNSFGFGGTNASLLFTKC 472 (473)
Q Consensus 402 ~~AsG~~~li~~~~~l~~~~ipp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~g~gG~~~~~vl~~~ 472 (473)
+||+|+.-...++.-|++ ..-+++++.+...||+...++++.|
T Consensus 421 fgatgvrl~mh~anrl~~----------------------------e~gqygvvaacaaggqgvamlieay 463 (465)
T KOG1392|consen 421 FGATGVRLAMHSANRLKE----------------------------EKGQYGVVAACAAGGQGVAMLIEAY 463 (465)
T ss_pred ccccchhhHHHHHhHHHh----------------------------hcCceeEeehhhcCCcceEEEeecc
Confidence 999999877777776654 1356888999999999999999988
|
|
| >cd00831 CHS_like Chalcone and stilbene synthases; plant-specific polyketide synthases (PKS) and related enzymes, also called type III PKSs | Back alignment and domain information |
|---|
Probab=99.58 E-value=6.7e-14 Score=140.48 Aligned_cols=257 Identities=15% Similarity=0.128 Sum_probs=159.4
Q ss_pred hccCHHHHHHHHHHHHHHHHcCCCCCCCCCCCceeEEEecCCCChhhHHHHHHHHHHhccccCCCcchhhhhhhHHHHHH
Q 011989 124 RSIARFIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHV 203 (473)
Q Consensus 124 ~~~~~~~~la~~aa~~Al~dAgl~~~~~~~~~~~gvivg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i 203 (473)
........|+.+|+++||+++|+++++++ .|+++++.+ ...+..+.+|
T Consensus 80 ~~~~~~~~la~~Aa~~aL~~a~~~~~~Id-----~li~~s~~~---------------------------~~~P~~a~~i 127 (361)
T cd00831 80 IALEEARELAEEAARGALDEAGLRPSDID-----HLVVNTSTG---------------------------NPTPSLDAML 127 (361)
T ss_pred hHHHHHHHHHHHHHHHHHHHhCCCHHHCC-----EEEEECCCC---------------------------CCCCCHHHHH
Confidence 33445679999999999999999888876 777776532 1234566689
Q ss_pred HHhcCCCC--Ceeeec-CCcchHHHHHHHHHHHHHcCCCCEEEEeecCCCcChHHHHHHhhhhccccccCCCCCCCCcCc
Q 011989 204 SMKYGFQG--PNHAAV-TACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPF 280 (473)
Q Consensus 204 a~~lgl~G--p~~~v~-~acasg~~Al~~A~~~I~~G~~d~vlv~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pf 280 (473)
...+|++. +++.+. .+|++++.||..|..+|++|..+.|||+++|.++.... ++. ..
T Consensus 128 ~~~lgl~~~~~~~dv~~~~C~~~~~al~~A~~~~~~~~~~~aLvv~~e~~s~~~~-----------------~~d---~~ 187 (361)
T cd00831 128 INRLGLRPDVKRYNLGGMGCSAGAIALDLAKDLLEANPGARVLVVSTELCSLWYR-----------------GPD---HR 187 (361)
T ss_pred HHHhCCCcccchhccccccchhHHHHHHHHHHHHHHCCCCEEEEEEeecccceeC-----------------CCC---cH
Confidence 99999974 577898 89999999999999999999999999999997433110 000 00
Q ss_pred cCCCCceeeccceEEEEEccchHHHhcCCeEEEEEEEEEE--------------ecCCCCCC----CCCCChHHHHHHHH
Q 011989 281 DCGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGM--------------SGDAHHIT----QPHIDGKGAILAMT 342 (473)
Q Consensus 281 d~~~~G~~~geGaaavvL~~~~~A~~~g~~~~a~i~g~~~--------------~~d~~~~~----~~~~~~~~~~~a~~ 342 (473)
+..-..+++||||+|+||++.+..... ......+.+... ...+.+.. .+........++++
T Consensus 188 ~~~~~~~lfGDgaaA~ll~~~~~~~~~-~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~ 266 (361)
T cd00831 188 SMLVGNALFGDGAAAVLLSNDPRDRRR-ERPLFELVRAASTLLPDSEDAMGWHLGEEGLTFVLSRDVPRLVEKNLERVLR 266 (361)
T ss_pred HHhhhhhhccCCceEEEEEcCCCcccc-cccceeeecccceeeecCCCceEEEEEcceEEEEeChhHHHHHHHHHHHHHH
Confidence 000135779999999999976542100 011112222111 00010000 00111124556789
Q ss_pred HHHHHc--CCCCCCccEEEEcCCCCCCCCHHHHHHHHHHhhcccCCCCcee-eccccchhhhHHhHHHHHHHHHHHHHHh
Q 011989 343 RALKQS--GLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAF-SSTKGAIGHLLGAAGAVEAIFAVLAIHH 419 (473)
Q Consensus 343 ~al~~a--gl~~~dId~v~~hgtgt~~~D~~E~~a~~~~~~~~~~~~~~~v-~s~k~~~Gh~~~AsG~~~li~~~~~l~~ 419 (473)
++|+++ |++++|||++.+|-.+... ...+.+.++... .++.. ..+-..+||+.+|+=.+.|..+ +++
T Consensus 267 ~~L~~~~~g~~~~did~~~~H~~~~~i-----~~~v~~~lgl~~--~~~~~s~~~l~~~GN~~sasi~~~L~~~---~~~ 336 (361)
T cd00831 267 KLLARLGIGLFKLAFDHWCVHPGGRAV-----LDAVEKALGLSP--EDLEASRMVLRRYGNMSSSSVLYVLAYM---EAK 336 (361)
T ss_pred HHhccccCCCccccceEEEECCCChHH-----HHHHHHHcCCCH--HHHHHHHHHHHHhCCchhccHHHHHHHH---HHh
Confidence 999999 9999999999999544332 223444444321 11111 1233578998888766655544 333
Q ss_pred CccCCCCCCCCCCCCCCCCCCccccCCCCCCcEEEEeccccccceeeEE
Q 011989 420 GVAPLTLNLAKPDPIFNDNFMPLTASKDMPISAALSNSFGFGGTNASLL 468 (473)
Q Consensus 420 ~~ipp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~g~gG~~~~~v 468 (473)
+.+ .+...++.-+||.|-+..+++
T Consensus 337 g~~-------------------------~~Gd~vll~~~G~G~s~~~~l 360 (361)
T cd00831 337 GRV-------------------------KRGDRGLLIAFGPGFTCESAV 360 (361)
T ss_pred CCC-------------------------CCCCEEEEEEEcCCceeeeee
Confidence 331 123456667888876666555
|
PKS generate an array of different products, dependent on the nature of the starter molecule. They share a common chemical strategy, after the starter molecule is loaded onto the active site cysteine, a carboxylative condensation reation extends the polyketide chain. Plant-specific PKS are dimeric iterative PKSs, using coenzyme A esters to deliver substrate to the active site, but they differ in the choice of starter molecule and the number of condensation reactions. |
| >PLN03169 chalcone synthase family protein; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.3e-13 Score=138.98 Aligned_cols=225 Identities=10% Similarity=0.058 Sum_probs=137.1
Q ss_pred CHHHHHHHHHHHHHHHHcCCCCCCCCCCCceeEEEecCCCChhhHHHHHHHHHHhccccCCCcchhhhhhhHHHHHHHHh
Q 011989 127 ARFIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMK 206 (473)
Q Consensus 127 ~~~~~la~~aa~~Al~dAgl~~~~~~~~~~~gvivg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~ 206 (473)
.....|+.+|+++||+++|+++++++ .||++++. ++..+..+..|...
T Consensus 104 e~~~~La~~Aa~~aL~~ag~~~~dId-----~lI~~t~t---------------------------~~~~P~~a~~l~~~ 151 (391)
T PLN03169 104 EAVTQMAVEASLACIKEWGRPVSDIT-----HLVYVSSS---------------------------EARLPGGDLYLAKQ 151 (391)
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHCC-----EEEEECcC---------------------------CCCCCcHHHHHHHH
Confidence 34568999999999999999888876 77777643 11234456689999
Q ss_pred cCCCCC---eeeecCCcchHHHHHHHHHHHHHcCCCCEEEEeecCCCcChHHHHHHhhhhccccccCCCCCCCCcCccCC
Q 011989 207 YGFQGP---NHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCG 283 (473)
Q Consensus 207 lgl~Gp---~~~v~~acasg~~Al~~A~~~I~~G~~d~vlv~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pfd~~ 283 (473)
||++.. .+.+..+|++++.||.+|..+|++|..+.|||+++|.++..+. . + .... ++..
T Consensus 152 LGl~~~~~~~~d~~~gC~g~~~aL~~A~~~~~~~~~~~vLvv~~e~~s~~~~-----~-----------~-~~~~-~~d~ 213 (391)
T PLN03169 152 LGLSPDVQRVMLYFLGCSGGVAGLRVAKDIAENNPGSRVLLTTSETTILGFR-----P-----------P-SPDR-PYDL 213 (391)
T ss_pred hCcCCcceeeecccChhHHHHHHHHHHHHHHHhCCCCeEEEEEEEcChhhcc-----C-----------C-Cccc-hhhh
Confidence 999752 4778999999999999999999999999999999997321110 0 0 0000 1222
Q ss_pred CCceeeccceEEEEEccchHHHhcCCeEEEEEEEEEE--ecC------------CCC----CCCCCCChHHHHHHHHHHH
Q 011989 284 RDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGM--SGD------------AHH----ITQPHIDGKGAILAMTRAL 345 (473)
Q Consensus 284 ~~G~~~geGaaavvL~~~~~A~~~g~~~~a~i~g~~~--~~d------------~~~----~~~~~~~~~~~~~a~~~al 345 (473)
....++||||+|+||+..+... ....++ .+...+. ..+ +.. ...|.........+++++|
T Consensus 214 ~~~~lFGDGAaA~vl~~~~~~~-~~~~~~-~l~~~~~~~ip~~~~~~~~~~~~~g~~~~~g~~v~~~~~~~~~~~i~~~L 291 (391)
T PLN03169 214 VGAALFGDGAAAVIIGADPIPV-SESPFF-ELHTAIQQFLPGTEKTIDGRLTEEGINFKLGRELPQKIEDNIEGFCKKLM 291 (391)
T ss_pred hhhhhccCceEEEEEecCCCcc-cCCcce-EEEeeeeeEcCCCccccCceecCCceEEEECcHHHHHHHHHHHHHHHHHH
Confidence 3456899999999998654320 001111 2221111 000 000 0001111133456789999
Q ss_pred HHcCCCCCCcc--EEEEcCCCCCCCCHHHHHHHHHHhhcccCCCCceee-ccccchhhhHHhHHHHHH
Q 011989 346 KQSGLQSHQVD--YVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFS-STKGAIGHLLGAAGAVEA 410 (473)
Q Consensus 346 ~~agl~~~dId--~v~~hgtgt~~~D~~E~~a~~~~~~~~~~~~~~~v~-s~k~~~Gh~~~AsG~~~l 410 (473)
+++|++++||| ++.+|-.+.+ =..++.+.++... .+++.+ .+-..+||+.+|+=.+.|
T Consensus 292 ~~~gl~~~did~~~~v~Hq~n~~-----il~~v~~~Lgl~~--ek~~~s~~~l~~~GNtsSasip~~L 352 (391)
T PLN03169 292 KKAGLVEKDYNDLFWAVHPGGPA-----ILNRLEKKLKLAP--EKLECSRRALMDYGNVSSNTIVYVL 352 (391)
T ss_pred HHcCCCCCCCCcceEEecCCCHH-----HHHHHHHHcCCCH--HHHHHHHHHHHHhCCchHhHHHHHH
Confidence 99999999999 8899943322 2233444443221 112211 123467887777644433
|
|
| >PLN03172 chalcone synthase family protein; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.3e-12 Score=131.37 Aligned_cols=267 Identities=12% Similarity=0.114 Sum_probs=160.7
Q ss_pred ccCHHHHHHHHHHHHHHHHcCCCCCCCCCCCceeEEEecCCCChhhHHHHHHHHHHhccccCCCcchhhhhhhHHHHHHH
Q 011989 125 SIARFIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVS 204 (473)
Q Consensus 125 ~~~~~~~la~~aa~~Al~dAgl~~~~~~~~~~~gvivg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia 204 (473)
...-..+|+.+|+++||+++|+++++++ .|+++++++. ..+..+.+|+
T Consensus 98 ~~~~a~~La~~Aa~~aL~~ag~~~~dId-----~ii~~t~t~~---------------------------~~P~~a~~l~ 145 (393)
T PLN03172 98 VVVEVPKLGKEAAAKAIKEWGQPKSKIT-----HLVFCTTSGV---------------------------DMPGADYQLT 145 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCHHHCC-----EEEEEccCCC---------------------------cCchHHHHHH
Confidence 3344568999999999999999887776 6777775431 1235677899
Q ss_pred HhcCCCCC---eeeecCCcchHHHHHHHHHHHHHcCCCCEEEEeecCCCcChHHHHHHhhhhccccccCCCCCCCCcCcc
Q 011989 205 MKYGFQGP---NHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFD 281 (473)
Q Consensus 205 ~~lgl~Gp---~~~v~~acasg~~Al~~A~~~I~~G~~d~vlv~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pfd 281 (473)
..||++.- .+.+..+|++++.+|..|.++++++..+.|||+++|.++..+. . ++. +-.+
T Consensus 146 ~~LGl~~~~~~~~~~~~gC~g~~~aL~~A~~~~~~~~~~~vLVV~~E~~S~~~~----------~------~~d--~~~~ 207 (393)
T PLN03172 146 KLLGLKPSVKRFMMYQQGCFAGGTVLRLAKDLAENNAGSRVLVVCSEITAVTFR----------G------PSD--THLD 207 (393)
T ss_pred HHhCCCCCceEEeeeCCchHHHHHHHHHHHHHHHcCCCCeEEEEEEehhhhhhc----------c------ccc--ccHH
Confidence 99999863 3567899999999999999999999999999999997442110 0 000 0000
Q ss_pred CCCCceeeccceEEEEEccchHHHhcCCeEEEEEEEEEE----ecCCC---CCC-----------CCCCChHHHHHHHHH
Q 011989 282 CGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGM----SGDAH---HIT-----------QPHIDGKGAILAMTR 343 (473)
Q Consensus 282 ~~~~G~~~geGaaavvL~~~~~A~~~g~~~~a~i~g~~~----~~d~~---~~~-----------~~~~~~~~~~~a~~~ 343 (473)
.--...++||||+|+||+..+... .. ++.-+|.++.. .+++. .+. .|......+...+++
T Consensus 208 ~~v~~~LFGDGAaAvVl~~~~~~~-~~-~~~~~i~~~~~~~~~~t~~~~~~~i~~~G~~~~l~~~vp~~~~~~i~~~~~~ 285 (393)
T PLN03172 208 SLVGQALFGDGAAAVIIGADPDTK-IE-RPLFEIVSAAQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLVE 285 (393)
T ss_pred hhhccchhcCceEEEEEecCCCCc-cc-CceeEEeeeccEEecCCcccccceEEcCCcEEEEechHHHHHHHHHHHHHHH
Confidence 012356799999999998743211 01 11113443321 11111 000 111112345567888
Q ss_pred HHHHcCCCCCCccEEEEcCCCCCCCCHHHHHHHHHHhhcccCCCCceee-ccccchhhhHHhHHHHHHHHHHHHHHhCcc
Q 011989 344 ALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFS-STKGAIGHLLGAAGAVEAIFAVLAIHHGVA 422 (473)
Q Consensus 344 al~~agl~~~dId~v~~hgtgt~~~D~~E~~a~~~~~~~~~~~~~~~v~-s~k~~~Gh~~~AsG~~~li~~~~~l~~~~i 422 (473)
.|++.|++..||+++.+|--|-+. ..++.+.++... ..+..+ .+-..+|++.+|+=+. ++..++++.+
T Consensus 286 ~L~~~gl~~~di~~~~~Hqgg~~I-----l~~v~~~Lgl~~--~~~~~s~~vl~~yGNtSSaSv~~----vL~~~~~~~~ 354 (393)
T PLN03172 286 AFAPIGINDWNSIFWIAHPGGPAI-----LDQVEIKLDLKE--EKLRATRHVLSDYGNMSSACVLF----ILDEMRKKSI 354 (393)
T ss_pred HhhhcCCCccccceEEecCCcHHH-----HHHHHHHcCCCH--HHHHHHHHHHHHhCccHHhHHHH----HHHHHHhhhh
Confidence 999999999999999999544333 334444444321 111111 1234667777665443 3333332110
Q ss_pred CCCCCCCCCCCCCCCCCCccccCCC-CCCcEEEEeccccccceeeEEEeec
Q 011989 423 PLTLNLAKPDPIFNDNFMPLTASKD-MPISAALSNSFGFGGTNASLLFTKC 472 (473)
Q Consensus 423 pp~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~s~g~gG~~~~~vl~~~ 472 (473)
.. ...+. .....++..+||-|=+..+++|+..
T Consensus 355 ~~------------------g~~~~G~~~~~~ll~afGpG~t~~~~ll~~~ 387 (393)
T PLN03172 355 EE------------------GKGSTGEGLEWGVLFGFGPGLTVETVVLHSV 387 (393)
T ss_pred hc------------------CCCCCCCCcceEEEEEeCCcceeeeeeeEec
Confidence 00 00011 1125677789998888888888763
|
|
| >TIGR02845 spore_V_AD stage V sporulation protein AD | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.9e-13 Score=128.76 Aligned_cols=234 Identities=14% Similarity=0.153 Sum_probs=147.3
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCceeEEEecCCCChhhHHHHHHHHHHhccccCCCcchhhhhhhHHHHHHHHhcC
Q 011989 129 FIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYG 208 (473)
Q Consensus 129 ~~~la~~aa~~Al~dAgl~~~~~~~~~~~gvivg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lg 208 (473)
...|+.+|+++||++||++++|++ .+++|+.. + ....+..++..||
T Consensus 50 e~eLa~eAa~~ALekAGL~~~DID-----~IIvGdl~---------------------------~--Q~~~As~vA~~LG 95 (327)
T TIGR02845 50 ERKLMEDAVNLALKKANLKKDDVD-----FFLAGDLL---------------------------N--QIITANFVARDLG 95 (327)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCC-----EEEEeCCC---------------------------C--cccHHHHHHHHhC
Confidence 468999999999999999988887 77777521 0 0124567888898
Q ss_pred CCCCeeeecCCcchHHHHHHHHHHHHHcCCCCEEEEeecCCCcChHHHHHHhhhhccccccCCCCCCCCcCc--cCCCCc
Q 011989 209 FQGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPF--DCGRDG 286 (473)
Q Consensus 209 l~Gp~~~v~~acasg~~Al~~A~~~I~~G~~d~vlv~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pf--d~~~~G 286 (473)
+ |.+.+.++|++++.||..|..+|++|.+|.|||++++.+.+......+ ...| .+....
T Consensus 96 I--P~fdV~~ACSTf~~AL~lAa~lI~SG~ad~VLVV~Ssh~S~AErqfr~-----------------p~eyg~q~~~ta 156 (327)
T TIGR02845 96 I--PFLGLYGACSTSMETLALGAMLVDGGFADRVLAATSSHYATAERQFRY-----------------PTEYGVQKPPTA 156 (327)
T ss_pred C--CEEEEeccCHHHHHHHHHHHHHHhCCCCCEEEEEEecccchhhhhccc-----------------ccccccCCCCee
Confidence 7 889999999999999999999999999999999999986544321110 0012 234456
Q ss_pred eeeccceEEEEEccchHHHh-cCCeEEEEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEEEEcCCCC
Q 011989 287 FVIGEGSGVLVLEELEHAKK-RGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYVNAHATST 365 (473)
Q Consensus 287 ~~~geGaaavvL~~~~~A~~-~g~~~~a~i~g~~~~~d~~~~~~~~~~~~~~~~a~~~al~~agl~~~dId~v~~hgtgt 365 (473)
..++|||+|+||++.+.-.+ .+.+ .++|..++.. |++.+. ....++....+.+-|++.|.+|+|-|.|..-..|.
T Consensus 157 ~~tgdGAGA~vl~~~~~~~~i~~~t-~gkv~d~g~~-d~~nmg--aamapaa~dti~~h~~d~~~~~~~yd~i~tgdlg~ 232 (327)
T TIGR02845 157 QWTVTGAGAVLLASTGGGPRITSAT-IGKVVDYGIT-DPLDMG--AAMAPAAADTIEAHFKDTGRSVDDYDLIVTGDLAR 232 (327)
T ss_pred eEEEcccEEEEEeecCCCCceEEEE-EEEEEecCCC-Ccccch--hhhhHHHHHHHHHHHHHcCCChhhccEEEecchHH
Confidence 78999999999987532110 1111 1445555443 222111 11234556788999999999999999998864332
Q ss_pred CCCCHHHHHHHHHHhhcccCC-----CC--ceeeccccch---hhhHHhHHHHHHHHHHHHHHhCccCC
Q 011989 366 PLGDTVEATAIRTVFSDHATS-----GS--LAFSSTKGAI---GHLLGAAGAVEAIFAVLAIHHGVAPL 424 (473)
Q Consensus 366 ~~~D~~E~~a~~~~~~~~~~~-----~~--~~v~s~k~~~---Gh~~~AsG~~~li~~~~~l~~~~ipp 424 (473)
. -..-+.+++..+... .. +.+......+ |-.-|+|...-.-..+..|++|.+-.
T Consensus 233 v-----g~~i~~~ll~~~g~~~~~~~~dcg~~iy~~~~~~~aggsgc~csa~v~~~~~~~~~~~g~~~r 296 (327)
T TIGR02845 233 V-----GSEILRKLLKERGYDVTERYDDCGVMIYRPDQQVFAGGSGCACSAVVTYGHILKEMLRGKLKK 296 (327)
T ss_pred H-----HHHHHHHHHHHcCCChhhccccCCeEEEcCCCcccCCCcccchhHHHHHHHHHHHHhcCcceE
Confidence 1 223455555433211 11 1122111111 22233455555555666777776543
|
Bacillus and Clostridium species contain about 10 % dipicolinic acid (pyridine-2,6-dicarboxylic acid) by weight. This protein family, SpoVAD, belongs to the spoVA operon that is suggested to act in the transport of dipicolinic acid (DPA) from the mother cell, where DPA is synthesized, to the forespore, a process essential to sporulation. Members of this protein family are found, so far, in exactly those species believed capable of endospore formation. |
| >PLN03170 chalcone synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=5.2e-13 Score=134.71 Aligned_cols=264 Identities=12% Similarity=0.086 Sum_probs=158.5
Q ss_pred CHHHHHHHHHHHHHHHHcCCCCCCCCCCCceeEEEecCCCChhhHHHHHHHHHHhccccCCCcchhhhhhhHHHHHHHHh
Q 011989 127 ARFIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMK 206 (473)
Q Consensus 127 ~~~~~la~~aa~~Al~dAgl~~~~~~~~~~~gvivg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~ 206 (473)
.-..+|+.+|+++||+++|+++++++ .|++.++++. ..+..+.+|...
T Consensus 104 ~~a~~La~~Aa~~AL~~ag~~~~dId-----~lI~~T~Tg~---------------------------~~Ps~a~~l~~~ 151 (401)
T PLN03170 104 VEVPKLGKAAAQKAIKEWGQPKSKIT-----HLVFCTTSGV---------------------------DMPGADYQLTKM 151 (401)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHCC-----EEEEEccCCC---------------------------CCChHHHHHHHH
Confidence 34457999999999999999887776 6777775431 134577799999
Q ss_pred cCCCCC---eeeecCCcchHHHHHHHHHHHHHcCCCCEEEEeecCCCcChHHHHHHhhhhccccccCCCCCCCCcCccCC
Q 011989 207 YGFQGP---NHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCG 283 (473)
Q Consensus 207 lgl~Gp---~~~v~~acasg~~Al~~A~~~I~~G~~d~vlv~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pfd~~ 283 (473)
||++.- .+.+..+|++++.+|..|.++++++..+.|||+++|.++..+. .++. .+ .+..
T Consensus 152 LGl~~~~~r~~d~~~gC~G~~~aL~~A~~l~~~~~~~~vLVV~~E~~S~~~~----------------~~~~-~~-~~~~ 213 (401)
T PLN03170 152 LGLRPSVNRLMMYQQGCFAGGTVLRVAKDLAENNRGARVLVVCSEITAVTFR----------------GPSE-SH-LDSM 213 (401)
T ss_pred hCcCcccHHHHhhcChhHHHHHHHHHHHHHHHcCCCCeEEEEEEehhhhccC----------------Cccc-ch-hhhh
Confidence 999864 5789999999999999999999999999999999997442110 0000 00 1111
Q ss_pred CCceeeccceEEEEEccchHHHhcCCeEEEEEEEEEE--------------ecCCCCCC----CCCCChHHHHHHHHHHH
Q 011989 284 RDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGM--------------SGDAHHIT----QPHIDGKGAILAMTRAL 345 (473)
Q Consensus 284 ~~G~~~geGaaavvL~~~~~A~~~g~~~~a~i~g~~~--------------~~d~~~~~----~~~~~~~~~~~a~~~al 345 (473)
....++||||+|+||+..+... ...+..++..... ...|.... .|......+...++++|
T Consensus 214 ~~~~LFGDGAaAvVl~~~~~~~--~~~~~~~l~~~~~~~~p~~~~~~~~~i~~~G~~~~l~~~vp~~~~~~i~~~v~~~L 291 (401)
T PLN03170 214 VGQALFGDGAAAVIVGADPDER--VERPLFQLVSASQTILPDSEGAIDGHLREVGLTFHLLKDVPGLISKNIERSLEEAF 291 (401)
T ss_pred hhhhhhhceeEEEEEecCCccc--ccCCceEEeeccceEecCCcccccceEEcCCeEEEEehHHHHHHHHHHHHHHHHHH
Confidence 2345799999999998743210 0111112322211 11111000 01111233456788999
Q ss_pred HHcCCCCCCccEEEEcCCCCCCCCHHHHHHHHHHhhcccCCCCcee-eccccchhhhHHhHHHHHHHHHHHH-HHhCccC
Q 011989 346 KQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAF-SSTKGAIGHLLGAAGAVEAIFAVLA-IHHGVAP 423 (473)
Q Consensus 346 ~~agl~~~dId~v~~hgtgt~~~D~~E~~a~~~~~~~~~~~~~~~v-~s~k~~~Gh~~~AsG~~~li~~~~~-l~~~~ip 423 (473)
+++|+++.||+++.+|--|... ..++.+.++... .++.. ..+-..+||+.+++=++-|-+.... ++.+.+.
T Consensus 292 ~~~gl~~~di~~~v~Hqgg~~i-----l~~v~~~Lgl~~--~~~~~s~~~l~~~GNtsSasv~~vL~~~~~~~~~~g~~~ 364 (401)
T PLN03170 292 KPLGITDYNSIFWVAHPGGPAI-----LDQVEAKVGLEK--ERMRATRHVLSEYGNMSSACVLFILDEMRKRSAEDGQAT 364 (401)
T ss_pred HhcCCCccccCeEEecCCcHHH-----HHHHHHHcCCCh--HHHHHHHHHHHHhCccHHhHHHHHHHHHHHhHhhcCCCC
Confidence 9999999999999999443332 233444444321 11111 1233467887777654444333211 1222211
Q ss_pred CCCCCCCCCCCCCCCCCccccCCCCCCcEEEEeccccccceeeEEEee
Q 011989 424 LTLNLAKPDPIFNDNFMPLTASKDMPISAALSNSFGFGGTNASLLFTK 471 (473)
Q Consensus 424 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~g~gG~~~~~vl~~ 471 (473)
+ ......++..+||-|=+..+++|++
T Consensus 365 ~----------------------G~~~~~~ll~afGpG~t~~~~ll~~ 390 (401)
T PLN03170 365 T----------------------GEGFDWGVLFGFGPGLTVETVVLHS 390 (401)
T ss_pred C----------------------CCCccEEEEEEeCchHhHHhHHhee
Confidence 0 0112466777888877777777765
|
|
| >PLN03171 chalcone synthase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.1e-12 Score=132.63 Aligned_cols=127 Identities=14% Similarity=0.146 Sum_probs=93.6
Q ss_pred cCHHHHHHHHHHHHHHHHcCCCCCCCCCCCceeEEEecCCCChhhHHHHHHHHHHhccccCCCcchhhhhhhHHHHHHHH
Q 011989 126 IARFIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSM 205 (473)
Q Consensus 126 ~~~~~~la~~aa~~Al~dAgl~~~~~~~~~~~gvivg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~ 205 (473)
.+....|+++|+++||+++|+++++++ .|+++++++. . .+..+..+..
T Consensus 105 ~~~a~~la~~Aa~~aL~~ag~~~~dId-----~li~~t~t~~--------------------------~-~P~~a~~v~~ 152 (399)
T PLN03171 105 ADAVPELAAEAAKKAIAEWGRPAADIT-----HLVVTTNSGA--------------------------H-IPGVDFRLVP 152 (399)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHCC-----EEEEEcCCCC--------------------------C-CCchHHHHHH
Confidence 345678999999999999999888887 7778775531 1 2345668999
Q ss_pred hcCCCCC---eeeecCCcchHHHHHHHHHHHHHcCCCCEEEEeecCCCcChHHHHHHhhhhccccccCCCCCCCCcCccC
Q 011989 206 KYGFQGP---NHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDC 282 (473)
Q Consensus 206 ~lgl~Gp---~~~v~~acasg~~Al~~A~~~I~~G~~d~vlv~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pfd~ 282 (473)
.||++.. .+.+..+|++++.+|..|..+|++|..+.|||+++|.++..... ++. . .++.
T Consensus 153 ~LGl~~~~~~~~~~~~gC~g~~~aL~~A~~li~~~~~~~vLVv~~e~~s~~~~~----------------~d~-~-~~~~ 214 (399)
T PLN03171 153 LLGLRPSVRRTMLHLNGCFAGAAALRLAKDLAENNRGARVLVVAAEITLLLFNG----------------PDE-G-CFQT 214 (399)
T ss_pred HhCCCcccceeeccCCccHHHHHHHHHHHHHHHhCCCCeEEEEEEeccccccCC----------------CCc-c-cHHh
Confidence 9999753 45666799999999999999999999999999999974322100 000 0 0111
Q ss_pred CCCceeeccceEEEEEccch
Q 011989 283 GRDGFVIGEGSGVLVLEELE 302 (473)
Q Consensus 283 ~~~G~~~geGaaavvL~~~~ 302 (473)
.-.+.++||||+|+||++.+
T Consensus 215 ~v~~~LFGDGAaA~vl~~~~ 234 (399)
T PLN03171 215 LLNQGLFGDGAAAVIVGADA 234 (399)
T ss_pred hhccccccCccEEEEEecCC
Confidence 11367899999999999754
|
|
| >PLN03168 chalcone synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=3e-12 Score=128.83 Aligned_cols=266 Identities=18% Similarity=0.165 Sum_probs=157.4
Q ss_pred ccCHHHHHHHHHHHHHHHHcCCCCCCCCCCCceeEEEecCCCChhhHHHHHHHHHHhccccCCCcchhhhhhhHHHHHHH
Q 011989 125 SIARFIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVS 204 (473)
Q Consensus 125 ~~~~~~~la~~aa~~Al~dAgl~~~~~~~~~~~gvivg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia 204 (473)
...-...|+.+|+++||+++|+++++++ .||++|+++. ..+..+.+|+
T Consensus 97 ~~~~a~~La~~Aa~~AL~~ag~~~~dId-----~lI~~T~Tg~---------------------------~~Ps~a~~l~ 144 (389)
T PLN03168 97 VVVQVPKLAAEAAQKAIKEWGGRKSDIT-----HIVFATTSGV---------------------------NMPGADHALA 144 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCHHHCC-----EEEEECCCCC---------------------------CCccHHHHHH
Confidence 3344568999999999999999988887 7888876531 1245677899
Q ss_pred HhcCCCCC---eeeecCCcchHHHHHHHHHHHHHcCCCCEEEEeecCCCcChHHHHHHhhhhccccccCCCCCCCCcCcc
Q 011989 205 MKYGFQGP---NHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFD 281 (473)
Q Consensus 205 ~~lgl~Gp---~~~v~~acasg~~Al~~A~~~I~~G~~d~vlv~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pfd 281 (473)
..||++.- ++.+..+|++++.+|..|..+|++|....|||+++|.++..+. . ++. ...+
T Consensus 145 ~~LGl~~~~~r~~d~~~gC~g~~~aL~~A~~~i~~~~~~~VLVV~~E~~S~~~~-----~-----------~~~--~~~~ 206 (389)
T PLN03168 145 KLLGLKPTVKRVMMYQTGCFGGASVLRVAKDLAENNKGARVLAVASEVTAVTYR-----A-----------PSE--NHLD 206 (389)
T ss_pred HHhCcCCcceeeeeeCCccHHHHHHHHHHHHHHHhCCCCEEEEEEEehhhhhcc-----C-----------ccc--ccHH
Confidence 99999863 6889999999999999999999999999999999997432110 0 000 0011
Q ss_pred CCCCceeeccceEEEEEccchHHHhcCCeEEEEEEEEEE--e--cCCC---CCCC-----------CCCChHHHHHHHHH
Q 011989 282 CGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGM--S--GDAH---HITQ-----------PHIDGKGAILAMTR 343 (473)
Q Consensus 282 ~~~~G~~~geGaaavvL~~~~~A~~~g~~~~a~i~g~~~--~--~d~~---~~~~-----------~~~~~~~~~~a~~~ 343 (473)
......++||||+|+||+..+... ....++ .+..... . +++. .+.. |..........+++
T Consensus 207 ~~~~~~LFGDGAaAvvl~~~~~~~-~~~~~~-~~~~~~~~~~p~s~~~~~~~~~~~g~~~~l~~~vp~~i~~~~~~~l~~ 284 (389)
T PLN03168 207 GLVGSALFGDGAGVYVVGSDPKPE-VEKALF-EVHWAGETILPESDGAIDGHLTEAGLIFHLMKDVPGLISKNIEKFLNE 284 (389)
T ss_pred HHhccccccCccEEEEEecCCCCc-cCCcce-EEEeeeeEEEcCCCCccCceEecCceEEEECHHHHHHHHHHHHHHHHH
Confidence 112457799999999999743211 011122 2222111 1 1111 0100 11111234556777
Q ss_pred HHHHcCCCCCCccEEEEcCCCCCCCCHHHHHHHHHHhhcccCCCCceee-ccccchhhhHHhHHHHHHHHHHHHHHhCcc
Q 011989 344 ALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFS-STKGAIGHLLGAAGAVEAIFAVLAIHHGVA 422 (473)
Q Consensus 344 al~~agl~~~dId~v~~hgtgt~~~D~~E~~a~~~~~~~~~~~~~~~v~-s~k~~~Gh~~~AsG~~~li~~~~~l~~~~i 422 (473)
+|+..++...|++++.+|--|.+. ..++.+.++... .++..+ .+-..+|++.+||=++ ++..++++.+
T Consensus 285 ~l~~~~~~~~d~~~~v~Hqgg~~I-----l~~v~~~Lgl~~--ek~~~s~~vl~~yGNtSSaSv~~----vL~~~~~~~~ 353 (389)
T PLN03168 285 ARKCVGSPDWNEMFWAVHPGGPAI-----LDQVEAKLKLTK--DKMQGSRDILSEFGNMSSASVLF----VLDQIRQRSV 353 (389)
T ss_pred HHHhcCCCccccceEEecCCcHHH-----HHHHHHHcCCCH--HHHHHHHHHHHHhCccHhhhHHH----HHHHHHHHHh
Confidence 888888888888999999544433 333444444321 112211 1334677777766443 3333333221
Q ss_pred CCCCCCCCCCCCCCCCCCccccC-CCCCCcEEEEeccccccceeeEEEee
Q 011989 423 PLTLNLAKPDPIFNDNFMPLTAS-KDMPISAALSNSFGFGGTNASLLFTK 471 (473)
Q Consensus 423 pp~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~s~g~gG~~~~~vl~~ 471 (473)
-+ ... ...+...++..+||-|=+...++|+.
T Consensus 354 ~~------------------g~~~~~~g~~~~ll~afGpG~t~~~~llr~ 385 (389)
T PLN03168 354 KM------------------GASTLGEGSEFGFFIGFGPGLTLEVLVLRA 385 (389)
T ss_pred hc------------------CCCCCCCCccEEEEEEEcchhhhhhhhhee
Confidence 10 000 00122466767888776666666654
|
|
| >PRK08304 stage V sporulation protein AD; Validated | Back alignment and domain information |
|---|
Probab=99.40 E-value=3.7e-12 Score=121.49 Aligned_cols=233 Identities=16% Similarity=0.170 Sum_probs=145.6
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCceeEEEecCCCChhhHHHHHHHHHHhccccCCCcchhhhhhhHHHHHHHHhcC
Q 011989 129 FIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYG 208 (473)
Q Consensus 129 ~~~la~~aa~~Al~dAgl~~~~~~~~~~~gvivg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lg 208 (473)
...|+.+|+++||++||++++|++ .+|+|...+. ...+..++..+|
T Consensus 56 eseLa~eAa~~ALekAGI~~~DID-----~lI~Gdll~Q-----------------------------~~sAs~vA~~LG 101 (337)
T PRK08304 56 ERKMMEDAIQQALQKANLKKSDID-----YLLAGDLLNQ-----------------------------IISANFAARELG 101 (337)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCC-----EEEEECCCCC-----------------------------cchHHHHHHHhC
Confidence 468999999999999999988887 7787752110 123456778888
Q ss_pred CCCCeeeecCCcchHHHHHHHHHHHHHcCCCCEEEEeecCCCcChHHHHHHhhhhccccccCCCCCCCCcCccCCCCcee
Q 011989 209 FQGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDGFV 288 (473)
Q Consensus 209 l~Gp~~~v~~acasg~~Al~~A~~~I~~G~~d~vlv~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pfd~~~~G~~ 288 (473)
+ |.+.|.++|+++..||..|..+|++|.+|.|||++++.+.+...-..|. . .-+..+ ......
T Consensus 102 I--Pa~dV~gACST~~~AL~lAa~lI~SG~ad~VLVV~Ssh~s~aerqfr~P-----~------eyg~qr----p~taqw 164 (337)
T PRK08304 102 I--PFLGLYGACSTMMESLALGSMLIDGGFADRVLAATSSHFATAERQFRFP-----T------EYGGQR----PPTAQW 164 (337)
T ss_pred C--cEEEEeccCHHHHHHHHHHHHHHhcCCCCEEEEEEcchhhhhhhhccCc-----h------hccccC----CCcceE
Confidence 6 9999999999999999999999999999999999999865543211110 0 001122 223456
Q ss_pred eccceEEEEEccchHHHhcCCeE----EEEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEEEEcCCC
Q 011989 289 IGEGSGVLVLEELEHAKKRGAKI----YAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYVNAHATS 364 (473)
Q Consensus 289 ~geGaaavvL~~~~~A~~~g~~~----~a~i~g~~~~~d~~~~~~~~~~~~~~~~a~~~al~~agl~~~dId~v~~hgtg 364 (473)
.++||+|+||.+.. .+.++ .++|..++.. |++.+. ....++....+.+-|++.|.+|+|-|.|..-..|
T Consensus 165 tvtGAGA~i~~~~~----~~~~i~~~t~Gkv~D~g~~-d~~nmg--aaMapAa~dti~~h~~d~~~~~~~yDli~tGDlg 237 (337)
T PRK08304 165 TVTGAGAVLLSREG----SGPRITHATIGKVVDLGIK-DPNDMG--AAMAPAAADTIQQHFKDTGRSPEDYDLIVTGDLG 237 (337)
T ss_pred EeeccEEEEEecCC----CCceEEEEeEEEEEecCCC-Ccccch--hhhhHHHHHHHHHHHHHcCCChhhccEEEEcchH
Confidence 89999999998642 12221 1334444432 111111 1123455678899999999999999999986443
Q ss_pred CCCCCHHHHHHHHHHhhcccCC-----CC--ceeec-ccc---chhhhHHhHHHHHHHHHHHHHHhCccCC
Q 011989 365 TPLGDTVEATAIRTVFSDHATS-----GS--LAFSS-TKG---AIGHLLGAAGAVEAIFAVLAIHHGVAPL 424 (473)
Q Consensus 365 t~~~D~~E~~a~~~~~~~~~~~-----~~--~~v~s-~k~---~~Gh~~~AsG~~~li~~~~~l~~~~ipp 424 (473)
.. -..-+.+++..+... .. +.+.. .+. .=|-.-|+|...-.-..+..|++|.+-.
T Consensus 238 ~v-----G~~i~~~ll~~~g~~~~~~~~DcG~~iy~~~~q~~~aGgSGc~csa~v~~~~~~~~~~~g~~~r 303 (337)
T PRK08304 238 RV-----GREILKELLKEEGYDIGDNYNDCGLMIYDSEQQDVFAGGSGCACSAVVTYGYLLKELQKGKLKR 303 (337)
T ss_pred HH-----HHHHHHHHHHHhCCChhhcccccCeEEeccCCCcccCCCcccchhHHHHHHHHHHHHhcCCceE
Confidence 21 223455555433211 11 12222 111 1122334455555556667777776543
|
|
| >PLN03173 chalcone synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.9e-12 Score=130.08 Aligned_cols=225 Identities=12% Similarity=0.111 Sum_probs=139.3
Q ss_pred CHHHHHHHHHHHHHHHHcCCCCCCCCCCCceeEEEecCCCChhhHHHHHHHHHHhccccCCCcchhhhhhhHHHHHHHHh
Q 011989 127 ARFIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMK 206 (473)
Q Consensus 127 ~~~~~la~~aa~~Al~dAgl~~~~~~~~~~~gvivg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~ 206 (473)
.-...|+.+|+++||+++|+++++++ .|++.++++. . .+..+.+|+..
T Consensus 100 ~~a~~La~~Aa~~AL~~ag~~~~dId-----~li~~t~t~~----------------------~-----~P~~a~~l~~~ 147 (391)
T PLN03173 100 VEVPKLGKEAAAKAIKEWGQPKSKIT-----HLVFCTTSGV----------------------D-----MPGADYQLTKL 147 (391)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHCC-----EEEEEccCCC----------------------c-----ccHHHHHHHHH
Confidence 34458999999999999999888776 6777775431 1 23567789999
Q ss_pred cCCCCC---eeeecCCcchHHHHHHHHHHHHHcCCCCEEEEeecCCCcChHHHHHHhhhhccccccCCCCCCCCcCccCC
Q 011989 207 YGFQGP---NHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCG 283 (473)
Q Consensus 207 lgl~Gp---~~~v~~acasg~~Al~~A~~~I~~G~~d~vlv~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pfd~~ 283 (473)
||++.. .+.+..+|++++.+|..|.++++++..+.|||+++|.++..+. . ++. +-.+..
T Consensus 148 LGl~~~~~~~~~~~~gC~g~~~aL~~A~~~~~~~~~~~vLVV~~E~~S~~~~----------~------~~d--~~~~~~ 209 (391)
T PLN03173 148 LGLRSSVKRFMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTFR----------G------PSD--THLDSL 209 (391)
T ss_pred hCCCccceeeehhcCccHHHHHHHHHHHHHHHhCCCCeEEEEEEehhhhhhC----------C------ccc--cchhhh
Confidence 999863 4567999999999999999999999999999999997432110 0 000 000011
Q ss_pred CCceeeccceEEEEEccchHHHhcCCeEEEEEEEEE--------------EecCCCC--C--CCCCCChHHHHHHHHHHH
Q 011989 284 RDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYG--------------MSGDAHH--I--TQPHIDGKGAILAMTRAL 345 (473)
Q Consensus 284 ~~G~~~geGaaavvL~~~~~A~~~g~~~~a~i~g~~--------------~~~d~~~--~--~~~~~~~~~~~~a~~~al 345 (473)
....++||||+|+||+..+.. ......+ ++.++. ....|.+ . ..|..........+++.|
T Consensus 210 v~~~LFGDGAaAvvl~~~~~~-~~~~~~~-~l~~~~~~~~~~t~~~~~~~i~~~G~~~~l~~~vp~~~~~~~~~~i~~~L 287 (391)
T PLN03173 210 VGQALFGDGAAAIIIGSDPVL-GVEKPLF-ELVSAAQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNVEKSLTEAF 287 (391)
T ss_pred hhhhhhcCceEEEEEeCCCCC-CcCCcce-EEEeeeeEEecCCccceeeEEEcCceEEEEecHHHHHHHHHHHHHHHHHH
Confidence 235679999999999864321 0011111 332222 1111111 0 011111234556788999
Q ss_pred HHcCCCCCCccEEEEcCCCCCCCCHHHHHHHHHHhhcccCCCCcee-eccccchhhhHHhHHHHHH
Q 011989 346 KQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAF-SSTKGAIGHLLGAAGAVEA 410 (473)
Q Consensus 346 ~~agl~~~dId~v~~hgtgt~~~D~~E~~a~~~~~~~~~~~~~~~v-~s~k~~~Gh~~~AsG~~~l 410 (473)
++.|+++.|||++.+|--|.+. ..++.+.++... .++.. ..+-..+|++.+|+=+.-|
T Consensus 288 ~~~gl~~~di~~~v~Hqgg~~I-----l~~v~~~LgL~~--ekl~~s~~vl~~yGNtSSaSv~~vL 346 (391)
T PLN03173 288 KPLGISDWNSLFWIAHPGGPAI-----LDQVEAKLALKP--EKLRATRHVLSEYGNMSSACVLFIL 346 (391)
T ss_pred HhcCCCccccCeEEECCCcHHH-----HHHHHHHcCCCh--HHHHHHHHHHHHhCcchhhHHHHHH
Confidence 9999999999999999554443 334444444321 11111 1233466777776644433
|
|
| >TIGR01835 HMG-CoA-S_prok 3-hydroxy-3-methylglutaryl CoA synthase, prokaryotic clade | Back alignment and domain information |
|---|
Probab=99.38 E-value=7.4e-11 Score=118.77 Aligned_cols=213 Identities=15% Similarity=0.110 Sum_probs=135.6
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCceeEEEecCCCChhhHHHHHHHHHHhccccCCCcchhhhhhhHHHHHHHHhcC
Q 011989 129 FIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYG 208 (473)
Q Consensus 129 ~~~la~~aa~~Al~dAgl~~~~~~~~~~~gvivg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lg 208 (473)
...|+++|+++||+++ ++++++ .|++++..+. ......+..|...||
T Consensus 49 ~~~la~~Aa~~aL~~a--~~~~Id-----~li~~t~s~~--------------------------~~~~s~a~~v~~~Lg 95 (379)
T TIGR01835 49 IVTMAASAAKPILDRN--DKQKID-----MVIFGTESGI--------------------------DQSKAAAVYVHGLLG 95 (379)
T ss_pred HHHHHHHHHHHHHHhC--CHhhCC-----EEEEEeCCCC--------------------------CCCCCHHHHHHHHhC
Confidence 3689999999999998 666776 7778875532 112346678999999
Q ss_pred CCC--CeeeecCCcchHHHHHHHHHHHHHcCCCCEEEEeecCCCcChHHHHHHhhhhccccccCCCCCCCCcCccCCCCc
Q 011989 209 FQG--PNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDG 286 (473)
Q Consensus 209 l~G--p~~~v~~acasg~~Al~~A~~~I~~G~~d~vlv~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pfd~~~~G 286 (473)
+++ +++.+..+|++++.||..|..+|++|..+.+||+++|..... ......
T Consensus 96 l~~~~~~~dv~~aC~gg~~aL~~A~~~i~s~~~~~aLVv~~D~a~~~---------------------------~~~~~~ 148 (379)
T TIGR01835 96 LQPFCRSFELKQACYGATAALQMAKGHVALSPDRKVLVIASDIAKYG---------------------------LESPGE 148 (379)
T ss_pred CCCCceEEEeccccHHHHHHHHHHHHHHHcCCCCeEEEEEeehhhcc---------------------------cCCCCC
Confidence 974 788899999999999999999999999999999999961100 001123
Q ss_pred eeeccceEEEEEccchHHHhcCCeEEEEEE-EEEE-ecCCCCC------CCCCCCh--------HHHHHHHHHHHHHcCC
Q 011989 287 FVIGEGSGVLVLEELEHAKKRGAKIYAEVR-GYGM-SGDAHHI------TQPHIDG--------KGAILAMTRALKQSGL 350 (473)
Q Consensus 287 ~~~geGaaavvL~~~~~A~~~g~~~~a~i~-g~~~-~~d~~~~------~~~~~~~--------~~~~~a~~~al~~agl 350 (473)
...||||+|+||+... .+. .+. +... ..+.... ..|...+ .....++++.|++.|+
T Consensus 149 ~~~GdGA~A~Ll~~~~-------~i~-~~~~~~~~~t~~~~df~~p~~~~~~~v~g~~s~~~y~~~~~~~~~~~l~~~g~ 220 (379)
T TIGR01835 149 PTQGAGAVAMLVSADP-------KLL-AINEDSVLYTDDIMDFWRPNYSTTALVDGQYSNEQYLNAFENAWNDYAKRTGL 220 (379)
T ss_pred ccccCccEEEEEecCC-------Cee-EEeccceeeecCCCCccCCCCCCceeECcHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 4589999999998532 121 121 1111 1111111 1111111 2345788899999999
Q ss_pred CCCCccEEEEcCCCCCCCCHHHHHHHHHHhhcccCCC--Cce-----eeccccchhhhHHhHHHHHHHHH
Q 011989 351 QSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSG--SLA-----FSSTKGAIGHLLGAAGAVEAIFA 413 (473)
Q Consensus 351 ~~~dId~v~~hgtgt~~~D~~E~~a~~~~~~~~~~~~--~~~-----v~s~k~~~Gh~~~AsG~~~li~~ 413 (473)
+++|||++..|-.-++. =..++..++....... .+. -...-..+||+.+|+=.+.|..+
T Consensus 221 ~~~did~~i~H~p~~~~----~~k~~~~~l~~~~~~~~~~~~~~~~~s~~~~~~~GN~~sas~~l~L~~~ 286 (379)
T TIGR01835 221 SLADFAAFCFHVPFTKM----GLKALRHILKKNYEDEDESVQNAYLESIIYNREVGNLYTGSLYLGLASL 286 (379)
T ss_pred CHHHcCEEEECCCCCcH----HHHHHHHHHhhcccccHHHHHHHhhhhhhhhhhcCchHhHHHHHHHHHH
Confidence 99999999999644443 2233333332110000 000 00123488999988866666544
|
This clade of hydroxymethylglutaryl-CoA (HMG-CoA) synthases is found in a limited spectrum of mostly gram-positive bacteria which make isopentenyl pyrophosphate (IPP) via the mevalonate pathway. This pathway is found primarily in eukaryotes and archaea, but the bacterial homologs are distinct, having aparrently diverged after being laterally transferred from an early eukaryote. HMG-CoA synthase is the first step in the pathway and joins acetyl-CoA with acetoacetyl-CoA with the release of one molecule of CoA. The Borellia sequence may have resulted from a separate lateral transfer event. |
| >PF02803 Thiolase_C: Thiolase, C-terminal domain; InterPro: IPR020617 Two different types of thiolase [, , ] are found both in eukaryotes and in prokaryotes: acetoacetyl-CoA thiolase (2 | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.4e-12 Score=108.27 Aligned_cols=119 Identities=26% Similarity=0.373 Sum_probs=89.9
Q ss_pred eEEEEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEEEEcCCCCCCCCHHHHHHHHHHhhcccCC-CC
Q 011989 310 KIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATS-GS 388 (473)
Q Consensus 310 ~~~a~i~g~~~~~d~~~~~~~~~~~~~~~~a~~~al~~agl~~~dId~v~~hgtgt~~~D~~E~~a~~~~~~~~~~~-~~ 388 (473)
+|+++|.+++... ..|.....+...+++++|+++|++++|||++|+| |+++.+.+...+.++ .+
T Consensus 2 ~pla~i~~~~~~~-----~~P~~~~~~p~~A~~~al~~ag~~~~did~~Ei~----------EaFA~~~l~~~~~lg~~~ 66 (123)
T PF02803_consen 2 KPLARIVGYASAG-----VDPEDMGLGPVPAARKALERAGLTPDDIDVIEIN----------EAFAAQVLAFLEALGLDP 66 (123)
T ss_dssp -ESEEEEEEEEEE-------GGGGGGTHHHHHHHHHHHHT--GGGESEEEE------------SBHHHHHHHHHHHTTGG
T ss_pred CeEEEEEEEEEEe-----cCHHHhCchHHHHHHHHHHHhCCCccccchhhcc----------chhhhHHHHhhccccccc
Confidence 5788999998765 3455556677899999999999999999999999 999988887655433 23
Q ss_pred ceeecccc--chhhhHHhHHHHHHHHHHHHHHhCccCCCCCCCCCCCCCCCCCCccccCCCCCCcEEEEeccccccceee
Q 011989 389 LAFSSTKG--AIGHLLGAAGAVEAIFAVLAIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPISAALSNSFGFGGTNAS 466 (473)
Q Consensus 389 ~~v~s~k~--~~Gh~~~AsG~~~li~~~~~l~~~~ipp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~g~gG~~~~ 466 (473)
.++|...+ .+|||.||||+..++.++++|+++ ..++.+....+-||...+
T Consensus 67 ~~vN~~GG~la~GHP~gasG~r~~~~l~~~L~~~----------------------------~~~~gla~~~~ggG~g~a 118 (123)
T PF02803_consen 67 EKVNPNGGALALGHPLGASGARLVVELAHQLRRR----------------------------GGRYGLAAICAGGGQGSA 118 (123)
T ss_dssp GGBSTT--HHHH-BHTTTHHHHHHHHHHHHHHHH----------------------------TTSEEEEEEEETTTEEEE
T ss_pred cccCcccccccccccccccccchhhhhHHHHHHh----------------------------chhhhhHHhcccceeeEE
Confidence 46666666 779999999999999999999862 245788888889999999
Q ss_pred EEEee
Q 011989 467 LLFTK 471 (473)
Q Consensus 467 ~vl~~ 471 (473)
+||||
T Consensus 119 ~ller 123 (123)
T PF02803_consen 119 VLLER 123 (123)
T ss_dssp EEEEE
T ss_pred EEEEC
Confidence 99986
|
3.1.9 from EC) and 3-ketoacyl-CoA thiolase (2.3.1.16 from EC). 3-ketoacyl-CoA thiolase (also called thiolase I) has a broad chain-length specificity for its substrates and is involved in degradative pathways such as fatty acid beta-oxidation. Acetoacetyl-CoA thiolase (also called thiolase II) is specific for the thiolysis of acetoacetyl-CoA and involved in biosynthetic pathways such as poly beta-hydroxybutyrate synthesis or steroid biogenesis. In eukaryotes, there are two forms of 3-ketoacyl-CoA thiolase: one located in the mitochondrion and the other in peroxisomes. There are two conserved cysteine residues important for thiolase activity. The first located in the N-terminal section of the enzymes is involved in the formation of an acyl-enzyme intermediate; the second located at the C-terminal extremity is the active site base involved in deprotonation in the condensation reaction. Mammalian nonspecific lipid-transfer protein (nsL-TP) (also known as sterol carrier protein 2) is a protein which seems to exist in two different forms: a 14 Kd protein (SCP-2) and a larger 58 Kd protein (SCP-x). The former is found in the cytoplasm or the mitochondria and is involved in lipid transport; the latter is found in peroxisomes. The C-terminal part of SCP-x is identical to SCP-2 while the N-terminal portion is evolutionary related to thiolases [].; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0008152 metabolic process; PDB: 2WUA_B 4E1L_B 3SVK_A 1WDK_D 1WDM_D 2D3T_D 1WDL_C 2IB8_B 2IBU_A 2IB9_C .... |
| >PLN02854 3-ketoacyl-CoA synthase | Back alignment and domain information |
|---|
Probab=99.36 E-value=5.6e-11 Score=121.67 Aligned_cols=119 Identities=15% Similarity=0.066 Sum_probs=88.8
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCCCCCCceeEEEecCCCChhhHHHHHHHHHHhccccCCCcchhhhhhhHHHHHHHHhc
Q 011989 128 RFIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKY 207 (473)
Q Consensus 128 ~~~~la~~aa~~Al~dAgl~~~~~~~~~~~gvivg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~l 207 (473)
-.......++.++|+++|++++|++ .||+.+ .+. ...+..+..|.+.+
T Consensus 187 ea~~v~~~~~~~lL~kaGi~p~dID-----~LIv~c-S~~--------------------------~p~PSlAa~I~n~L 234 (521)
T PLN02854 187 EAEAVMFGALDSLFSKTGVKPRDIG-----ILIVNC-SLF--------------------------NPTPSLSAMIVNHY 234 (521)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHCC-----EEEEEC-CCC--------------------------CCCCCHHHHHHHHh
Confidence 3456677789999999999887776 555543 211 12356777899999
Q ss_pred CCC-C-Ceeeec-CCcchHHHHHHHHHHHHHcCCCCEEEEeecCCCcChHHHHHHhhhhccccccCCCCCCCCcCccCCC
Q 011989 208 GFQ-G-PNHAAV-TACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGR 284 (473)
Q Consensus 208 gl~-G-p~~~v~-~acasg~~Al~~A~~~I~~G~~d~vlv~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pfd~~~ 284 (473)
|++ . .++.++ .||++++.+|..|.++|+.+....+||+++|.++..+ .+-+.+.
T Consensus 235 Glr~~i~afdLsgmGCSggl~aL~lA~~lL~~~~~~~aLVVstE~~S~~~-----------------------y~g~Drs 291 (521)
T PLN02854 235 KLRTDIKSYNLGGMGCSAGLISIDLANDLLKANPNSYAVVVSTENITLNW-----------------------YFGNDRS 291 (521)
T ss_pred CCCCCceEEecccchhhhHHHHHHHHHHHHHhCCCCeEEEEEEeeeecCC-----------------------CCCCchh
Confidence 998 4 578888 7999999999999999999999999999999853111 0001112
Q ss_pred C---ceeeccceEEEEEccc
Q 011989 285 D---GFVIGEGSGVLVLEEL 301 (473)
Q Consensus 285 ~---G~~~geGaaavvL~~~ 301 (473)
. ..++||||+|+||++.
T Consensus 292 ~lv~~~LFgDGAAAvlLs~~ 311 (521)
T PLN02854 292 MLLCNCIFRMGGAAVLLSNK 311 (521)
T ss_pred hhcceeeeccceeEEEEecc
Confidence 2 4678999999999874
|
|
| >PLN02377 3-ketoacyl-CoA synthase | Back alignment and domain information |
|---|
Probab=99.34 E-value=5.5e-11 Score=121.73 Aligned_cols=119 Identities=17% Similarity=0.177 Sum_probs=91.8
Q ss_pred CHHHHHHHHHHHHHHHHcCCCCCCCCCCCceeEEEecCCCChhhHHHHHHHHHHhccccCCCcchhhhhhhHHHHHHHHh
Q 011989 127 ARFIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMK 206 (473)
Q Consensus 127 ~~~~~la~~aa~~Al~dAgl~~~~~~~~~~~gvivg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~ 206 (473)
.....++..|+.+||+++|++++|++ .+++ ++++. ...+..+..|.+.
T Consensus 170 ~ea~~l~~~A~~~aL~kaGi~p~dID-----~LVv-~cS~~--------------------------~~~PSlaa~V~~~ 217 (502)
T PLN02377 170 EEAEQVMFGALDNLFANTNVNPKDIG-----ILVV-NCSLF--------------------------NPTPSLSAMIVNK 217 (502)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHCC-----EEEE-ECCCC--------------------------CCCCcHHHHHHHH
Confidence 44668999999999999999888775 5555 43321 1235667789999
Q ss_pred cCCCC--Ceeeec-CCcchHHHHHHHHHHHHHcCCCCEEEEeecCCCcChHHHHHHhhhhccccccCCCCCCCCcCccCC
Q 011989 207 YGFQG--PNHAAV-TACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCG 283 (473)
Q Consensus 207 lgl~G--p~~~v~-~acasg~~Al~~A~~~I~~G~~d~vlv~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pfd~~ 283 (473)
||++. .++.++ .||++++.+|..|.++|+.+....|||+++|.++..+. ++.+
T Consensus 218 LGlr~~v~afdL~gmGCsggl~aL~lA~~ll~~~~~~~aLVVstE~~S~~~~------------------------~~d~ 273 (502)
T PLN02377 218 YKLRGNIRSFNLGGMGCSAGVIAVDLAKDMLQVHRNTYAVVVSTENITQNWY------------------------FGNK 273 (502)
T ss_pred hCCCCCCeEEecccchhhHHHHHHHHHHHHHHcCCCCEEEEEEEeccccccC------------------------CCCC
Confidence 99984 688899 59999999999999999999999999999997432211 1122
Q ss_pred CC----ceeeccceEEEEEccc
Q 011989 284 RD----GFVIGEGSGVLVLEEL 301 (473)
Q Consensus 284 ~~----G~~~geGaaavvL~~~ 301 (473)
.. ..+++|||+|+||+..
T Consensus 274 ~s~lv~n~LFgDGAaAvlLs~~ 295 (502)
T PLN02377 274 KSMLIPNCLFRVGGSAVLLSNK 295 (502)
T ss_pred ccccccceeeccccEEEEEecc
Confidence 22 3678999999999863
|
|
| >COG3425 PksG 3-hydroxy-3-methylglutaryl CoA synthase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.8e-10 Score=110.39 Aligned_cols=217 Identities=19% Similarity=0.221 Sum_probs=146.3
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCCCCCCceeEEEecCCCChhhHHHHHHHHHHhccccCCCcchhhhhhhHHHHHHHHhc
Q 011989 128 RFIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKY 207 (473)
Q Consensus 128 ~~~~la~~aa~~Al~dAgl~~~~~~~~~~~gvivg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~l 207 (473)
...-|+++|++++|.++++++.++. .|++|+..+.... -..+..|+..|
T Consensus 50 D~vTmaveAA~~~l~r~~~D~~~Ig-----~v~vgTES~~d~~--------------------------K~~at~v~~~l 98 (377)
T COG3425 50 DAVTMAVEAARNALKRADIDPSKIG-----AVIVGSESGPDAV--------------------------KPTATIVAEAL 98 (377)
T ss_pred hHHHHHHHHHHHHHhccCCCHHHCc-----eEEEecCCCcccc--------------------------cchHHHHHHHh
Confidence 3567999999999999999776665 7899986543221 13456788999
Q ss_pred CCCCCee--eecCCcchHHHHHHHHHHHHHcCCCCEEEEeecCCCcChHHHHHHhhhhccccccCCCCCCCCcCccCCCC
Q 011989 208 GFQGPNH--AAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRD 285 (473)
Q Consensus 208 gl~Gp~~--~v~~acasg~~Al~~A~~~I~~G~~d~vlv~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pfd~~~~ 285 (473)
|+..-.. -+..+|-++..||++|..+|.+|..+.+||+++|..... +.. .-
T Consensus 99 g~~~~~~~~d~~~AC~agT~aL~~a~~~v~s~~~~~~LvI~sD~a~~~-------------------~~~--------~~ 151 (377)
T COG3425 99 GLNPSARAADVEFACYAGTAALQAAIGWVESGMISYGLVIGADTAQYA-------------------PGD--------AL 151 (377)
T ss_pred CCCCceehhhHHHHHHHHHHHHHHHHHHHHcCCccceEEEeehhhccC-------------------CCc--------cc
Confidence 9975433 366799999999999999999999999999999962111 001 12
Q ss_pred ceeeccceEEEEEccchHHHhcCCeEEEEEEEEEE-ecCCCCCCCCC----C--C--------hHHHHHHHHHHHHHcCC
Q 011989 286 GFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGM-SGDAHHITQPH----I--D--------GKGAILAMTRALKQSGL 350 (473)
Q Consensus 286 G~~~geGaaavvL~~~~~A~~~g~~~~a~i~g~~~-~~d~~~~~~~~----~--~--------~~~~~~a~~~al~~agl 350 (473)
....|.|++|+|++.- ..+.+.+.+.+. ..|-...-.|+ + . ......+.+..+++.|+
T Consensus 152 E~t~GAGavA~lIg~n-------~~~~a~~~~~~syt~d~~DFwRp~~~~yp~~dg~~s~~~Y~~~~~~a~~~~~~k~gl 224 (377)
T COG3425 152 EYTAGAGAVAFLIGKN-------PPIVAEFEGTGSYTTDTPDFWRPDGQPYPYVDGRFSEPAYFKHVENAAKGYMEKTGL 224 (377)
T ss_pred CccCCCceEEEEEccC-------CCeEEEecCceEEecCCCcccccCCCcccccCceecHHHHHHHHHHHHHHHHHHhCC
Confidence 2347899999999852 223445544433 33322211111 1 1 13466788889999999
Q ss_pred CCCCccEEEEcCCCCCCCCHHHHHHHHHHhhcccCCCCceee-ccccchhhhHHhHHHHHHHHHHHH
Q 011989 351 QSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFS-STKGAIGHLLGAAGAVEAIFAVLA 416 (473)
Q Consensus 351 ~~~dId~v~~hgtgt~~~D~~E~~a~~~~~~~~~~~~~~~v~-s~k~~~Gh~~~AsG~~~li~~~~~ 416 (473)
+++|.||+..|-+-+.. =..+.+.+.-... .+.-+ .....+|++..+|..++|+..+..
T Consensus 225 s~~dfdy~vfH~P~~k~----~~ka~k~l~~~~e---~v~~~l~~~~~vGN~YtgS~~L~Las~L~~ 284 (377)
T COG3425 225 SPDDFDYIVFHQPNGKF----PKKAAKSLGFKEE---QVKPGLVYPQRIGNTYTGSLLLGLASLLDN 284 (377)
T ss_pred ChhhhCeEEecCCCCch----HHHHHHHhCccHh---hcCccchhhhhcCcccchhHHHHHHHHHhh
Confidence 99999999999765554 4455555543311 12112 222378999999988888766544
|
|
| >PLN02577 hydroxymethylglutaryl-CoA synthase | Back alignment and domain information |
|---|
Probab=99.26 E-value=2e-10 Score=116.68 Aligned_cols=182 Identities=14% Similarity=0.147 Sum_probs=115.2
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCceeEEEecCCCChhhHHHHHHHHHHhccccCCCcchhhhhhhHHHHHHH---H
Q 011989 129 FIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVS---M 205 (473)
Q Consensus 129 ~~~la~~aa~~Al~dAgl~~~~~~~~~~~gvivg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia---~ 205 (473)
...|++.|++.||+++|+++++++ .|+++|.++.. ..+..+..|. .
T Consensus 53 ~~tmA~~AA~~aL~~agid~~~Id-----llivaTeT~~d--------------------------~~ps~A~~v~~ll~ 101 (459)
T PLN02577 53 VISMSLTVVKSLLEKYNIDPKQIG-----RLEVGSETVID--------------------------KSKSIKTFLMQLFE 101 (459)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCC-----EEEEEcCCCCC--------------------------CCCchHHHHHHHHH
Confidence 568999999999999999888887 88888865421 1123344443 5
Q ss_pred hcCCCC-CeeeecCCcchHHHHHHHHHHHHHcCCC--CEEEEeecCCCcChHHHHHHhhhhccccccCCCCCCCCcCccC
Q 011989 206 KYGFQG-PNHAAVTACATGAHSIGDAARMIQFGDS--DVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDC 282 (473)
Q Consensus 206 ~lgl~G-p~~~v~~acasg~~Al~~A~~~I~~G~~--d~vlv~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pfd~ 282 (473)
.+|.+. .++.+..+|.+++.||..|..+|++|.. +.+||+++|...... ...
T Consensus 102 ~LG~~~~~afDi~~AC~G~~~AL~~A~~~i~sg~~~~~~aLVV~aD~a~~~~--------------------~~~----- 156 (459)
T PLN02577 102 ESGNTDIEGVDSTNACYGGTAALLNCVNWVESSSWDGRYGLVVAADSAVYAE--------------------GPA----- 156 (459)
T ss_pred HhCCCCcEEeehhhhhHHHHHHHHHHHHHHHcCCCCCCeEEEEEechhhccC--------------------CCC-----
Confidence 566654 7888999999999999999999999975 999999999621110 000
Q ss_pred CCCceeeccceEEEEEccchHHHhcCCeEEEEEEEEEEecCCCCCCCCC-------CCh--------HHHHHHHHHHHHH
Q 011989 283 GRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPH-------IDG--------KGAILAMTRALKQ 347 (473)
Q Consensus 283 ~~~G~~~geGaaavvL~~~~~A~~~g~~~~a~i~g~~~~~d~~~~~~~~-------~~~--------~~~~~a~~~al~~ 347 (473)
....|+||+|+||+..+. . .+-....|... .+....-.|. ..+ ..+..++++.+++
T Consensus 157 ---e~t~GdGA~A~lv~~~~~----~-~l~~~~~g~~~-~~~~Df~rP~~~~~~~~vdG~~s~~~yl~~~~~~~~~~~~k 227 (459)
T PLN02577 157 ---RPTGGAGAVAMLVGPNAP----I-VFESKYRGSHM-AHVYDFYKPDLASEYPVVDGKLSQTCYLMALDSCYKRFCEK 227 (459)
T ss_pred ---CCCCCcceEEEEEccCCC----c-eeecccccccC-cccchhcccCCCCCceEEcchHHHHHHHHHHHHHHHHHHHH
Confidence 112399999999985321 0 01001111111 1111111121 121 2233455556555
Q ss_pred c------CCCCCCccEEEEcCCCCCCCCHHHHHHHHHH
Q 011989 348 S------GLQSHQVDYVNAHATSTPLGDTVEATAIRTV 379 (473)
Q Consensus 348 a------gl~~~dId~v~~hgtgt~~~D~~E~~a~~~~ 379 (473)
. |++++|+||+..|-.-++. =..+++.+
T Consensus 228 ~~~~~~~g~~~~d~d~~vfHqP~~km----~~ka~~~l 261 (459)
T PLN02577 228 YEKLEGKQFSISDADYFVFHAPYNKL----VQKSFARL 261 (459)
T ss_pred hhcccccCCCHHHcCEEEecCCccch----hHHHHHHH
Confidence 5 8899999999999655544 33445444
|
|
| >PRK12404 stage V sporulation protein AD; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.3e-10 Score=108.69 Aligned_cols=233 Identities=14% Similarity=0.167 Sum_probs=143.4
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCceeEEEecCCCChhhHHHHHHHHHHhccccCCCcchhhhhhhHHHHHHHHhcC
Q 011989 129 FIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYG 208 (473)
Q Consensus 129 ~~~la~~aa~~Al~dAgl~~~~~~~~~~~gvivg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lg 208 (473)
...|+.+|+++||++||++++|++ .+++|+..++ ..++..++..||
T Consensus 54 E~~L~~EA~~~AL~kAGI~~~DID-----~i~vGdL~nQ-----------------------------~ipssfvar~LG 99 (334)
T PRK12404 54 ERKLLEEACSRAIEKAKLRKEDIQ-----FFLAGDLMNQ-----------------------------ITPTSFAARTLG 99 (334)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCC-----EEEEEecCCC-----------------------------cCcHHHHHHHhC
Confidence 457999999999999999988887 7888774311 122336778888
Q ss_pred CCCCeeeecCCcchHHHHHHHHHHHHHcCCCCEEEEeecCCCcChHHHHHHhhhhccccccCCCCCCCCcCccCCCCcee
Q 011989 209 FQGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDGFV 288 (473)
Q Consensus 209 l~Gp~~~v~~acasg~~Al~~A~~~I~~G~~d~vlv~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pfd~~~~G~~ 288 (473)
+ |.+.|.++|+++..||..|..+|++|.+|.|||+.+..+.+...-..|. . .-+..||.. .-.
T Consensus 100 I--P~~gV~gACSTg~eAL~lAa~~VaSG~Ad~VLavtsSH~~~aErqfR~P-----~------eyG~Qrp~t----aqw 162 (334)
T PRK12404 100 I--PYLGLFGACSTSMEGLALAALIVNSGGAKYVLTGASSHNAAVEKQFRYP-----T------EYGGQKPPT----AQW 162 (334)
T ss_pred C--CccceeecCHHHHHHHHHHHHHHHcCCCCEEEEEeCcccchhhhhccCc-----c------cccCcCCCc----ccE
Confidence 5 7799999999999999999999999999999999987755543221110 0 112333332 223
Q ss_pred eccceEEEEEccchHHHhcCCeE----EEEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEEEEcCCC
Q 011989 289 IGEGSGVLVLEELEHAKKRGAKI----YAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYVNAHATS 364 (473)
Q Consensus 289 ~geGaaavvL~~~~~A~~~g~~~----~a~i~g~~~~~d~~~~~~~~~~~~~~~~a~~~al~~agl~~~dId~v~~hgtg 364 (473)
..-|++++||.+.. .+.++ .++|..++.. |++.+. ....++....|.+-|++.|.+|+|-|.|..-..|
T Consensus 163 TvTgaga~~l~~~~----~~~~i~~~T~Gkv~D~g~~-d~~nMG--aaMAPAA~dti~~h~~d~~~~~~~yDlI~TGDLg 235 (334)
T PRK12404 163 TVTGAGAAILSKTG----DGPRVTSATIGRVVDMGLT-DPFNMG--GAMAPAAVDTIEAHLRDRQIDASYYDLIVTGDLG 235 (334)
T ss_pred EEEceEEEEEecCC----CCceEEEEEEEEEEecCCC-Ccccch--hhhhHHHHHHHHHHHHHhCCChhhccEEEEcchH
Confidence 55688899997642 12221 1334444432 222111 1123455677899999999999999999986433
Q ss_pred CCCCCHHHHHHHHHHhhcccCC------CC--ceeeccccch---hhhHHhHHHHHHHHHHHHHHhCccCC
Q 011989 365 TPLGDTVEATAIRTVFSDHATS------GS--LAFSSTKGAI---GHLLGAAGAVEAIFAVLAIHHGVAPL 424 (473)
Q Consensus 365 t~~~D~~E~~a~~~~~~~~~~~------~~--~~v~s~k~~~---Gh~~~AsG~~~li~~~~~l~~~~ipp 424 (473)
.. -..-+.+++..+... .. +.+......+ |-.-|+|.....-..+..|++|.+-.
T Consensus 236 ~v-----G~~i~~~ll~~~g~~~~~~~~~DCG~~iyd~~~~~~aGgSGcgcsA~v~~g~~~~~~~~g~~~r 301 (334)
T PRK12404 236 HV-----GREIAKDLLHKHGVKVPEEQFQDCGLLIYREGQPVIAGASGPGCSATVTYGHLLNRMKRGELKR 301 (334)
T ss_pred HH-----HHHHHHHHHHHcCCCCCcccccccCeEEecCCCcccCCCcccchHHHHHHHHHHHHHhcCCceE
Confidence 21 233456666443211 01 1122111111 22234455555556667777776543
|
|
| >PLN02932 3-ketoacyl-CoA synthase | Back alignment and domain information |
|---|
Probab=99.20 E-value=6.4e-10 Score=113.29 Aligned_cols=124 Identities=15% Similarity=0.156 Sum_probs=95.4
Q ss_pred CHHHHHHHHHHHHHHHHcCCCCCCCCCCCceeEEEecCCCChhhHHHHHHHHHHhccccCCCcchhhhhhhHHHHHHHHh
Q 011989 127 ARFIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMK 206 (473)
Q Consensus 127 ~~~~~la~~aa~~Al~dAgl~~~~~~~~~~~gvivg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~ 206 (473)
+-...++..|+++||+++|+++++++ .||+.++++. ..+..+..|...
T Consensus 146 ~ea~~la~~Aa~~aL~~agi~p~dId-----~lIv~tst~~---------------------------~~Pslaa~V~~~ 193 (478)
T PLN02932 146 KETEEVIIGAVDNLFRNTGISPSDIG-----ILVVNSSTFN---------------------------PTPSLSSILVNK 193 (478)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHCC-----EEEEEccCCC---------------------------CCCcHHHHHHHH
Confidence 34568999999999999999888886 7777775531 235677899999
Q ss_pred cCCC-C-Ceeeec-CCcchHHHHHHHHHHHHHcCCCCEEEEeecCCCcChHHHHHHhhhhccccccCCCCCCCCcCccCC
Q 011989 207 YGFQ-G-PNHAAV-TACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCG 283 (473)
Q Consensus 207 lgl~-G-p~~~v~-~acasg~~Al~~A~~~I~~G~~d~vlv~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pfd~~ 283 (473)
+|++ . .++.++ .||++++.+|..|.++|+.+....|||+++|.++..... .. . -+..
T Consensus 194 lGlr~~i~~fdL~gmGCSggl~aL~lA~~ll~~~~~~~aLVVstE~~S~~~~~-----------------~d-~--r~~l 253 (478)
T PLN02932 194 FKLRDNIKSLNLGGMGCSAGVIAIDAAKSLLQVHRNTYALVVSTENITQNLYL-----------------GN-N--KSML 253 (478)
T ss_pred hCCCCCceEEEeccchhhhHHHHHHHHHHHHHcCCCCeEEEEEEeecccccCC-----------------Cc-c--hhhh
Confidence 9997 3 688898 899999999999999999999999999999985432210 00 0 0001
Q ss_pred CCceeeccceEEEEEccch
Q 011989 284 RDGFVIGEGSGVLVLEELE 302 (473)
Q Consensus 284 ~~G~~~geGaaavvL~~~~ 302 (473)
-...++||||+|+||+..+
T Consensus 254 ~t~~LFgDGAAAvlLs~~~ 272 (478)
T PLN02932 254 VTNCLFRIGGAAILLSNRS 272 (478)
T ss_pred ccceeecccceEEEEeccc
Confidence 2356789999999999744
|
|
| >PLN02192 3-ketoacyl-CoA synthase | Back alignment and domain information |
|---|
Probab=99.12 E-value=8.6e-10 Score=112.79 Aligned_cols=118 Identities=18% Similarity=0.172 Sum_probs=90.4
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCCCCCCceeEEEecCCCChhhHHHHHHHHHHhccccCCCcchhhhhhhHHHHHHHHhc
Q 011989 128 RFIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKY 207 (473)
Q Consensus 128 ~~~~la~~aa~~Al~dAgl~~~~~~~~~~~gvivg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~l 207 (473)
-...++..|+++||+++|++++|++ -||+.++. ....+..+..|.+.+
T Consensus 175 Ea~~~~~~Aa~~aL~kaGi~p~DID-----iLIv~~S~---------------------------~~~~PSlaa~I~n~l 222 (511)
T PLN02192 175 EAETVMFGAIDQLLAKTSVKPKDIG-----ILIVNCSL---------------------------FNPTPSLSAMVINHY 222 (511)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHCC-----EEEEECCC---------------------------CCCCchHHHHHHHHh
Confidence 3567889999999999999888776 55555432 112356777899999
Q ss_pred CCCC--Ceeeec-CCcchHHHHHHHHHHHHHcCCCCEEEEeecCCCcChHHHHHHhhhhccccccCCCCCCCCcCccCCC
Q 011989 208 GFQG--PNHAAV-TACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGR 284 (473)
Q Consensus 208 gl~G--p~~~v~-~acasg~~Al~~A~~~I~~G~~d~vlv~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pfd~~~ 284 (473)
|++. .++.++ .||++++.||..|.++|+.+....+||+++|.++..+. +..++
T Consensus 223 Glr~~i~afdLsgmGCSggl~aLdlA~~lL~a~~~~~aLVVstE~~S~n~y------------------------~g~dr 278 (511)
T PLN02192 223 KLRGNILSYNLGGMGCSAGLISIDLAKHLLQVHPNSYALVISMENITLNWY------------------------FGNDR 278 (511)
T ss_pred CCCCCceEEEcccchhhhHHHHHHHHHHHHHcCCCCeEEEEEEEeccccCC------------------------CCCCH
Confidence 9984 789999 69999999999999999999999999999998541110 11112
Q ss_pred C----ceeeccceEEEEEccc
Q 011989 285 D----GFVIGEGSGVLVLEEL 301 (473)
Q Consensus 285 ~----G~~~geGaaavvL~~~ 301 (473)
. ..++||||+|+||+..
T Consensus 279 s~lv~n~LFgDGAaAvLLs~~ 299 (511)
T PLN02192 279 SMLVSNCLFRMGGAAILLSNK 299 (511)
T ss_pred HHHhccccccccceEEEEecc
Confidence 1 1458999999999874
|
|
| >PF13723 Ketoacyl-synt_2: Beta-ketoacyl synthase, N-terminal domain | Back alignment and domain information |
|---|
Probab=99.09 E-value=3.6e-09 Score=96.81 Aligned_cols=126 Identities=21% Similarity=0.267 Sum_probs=111.5
Q ss_pred cCCCchhhhccCHHHHHHHHHHHHHHHHcCCCCCCCCCCCceeEEEecCCCChhhHHHHHHHHHHhccccCCCcchhhhh
Q 011989 116 SWLNSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRIL 195 (473)
Q Consensus 116 ~~~~~~~~~~~~~~~~la~~aa~~Al~dAgl~~~~~~~~~~~gvivg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (473)
.+|++...|||.+..+|++.++.+++++.. +.+ .+++++..|+.....+..+.+.++ +.++|..|...+
T Consensus 21 ~~lp~m~rRRls~~~rla~~~a~~~~~~~~----~~d-----~~VfaS~~Gel~~t~~ll~~l~~~--~~lSPT~Fs~SV 89 (218)
T PF13723_consen 21 AFLPPMQRRRLSRLSRLALEAALECLAEDE----QPD-----AIVFASRHGELERTFKLLEALAEE--EELSPTAFSQSV 89 (218)
T ss_pred ccCCHHHHcccCHHHHHHHHHHHHHHhccC----CCC-----cEEEEeCCCcHHHHHHHHHHHHhC--CCcCccchhhhh
Confidence 348899999999999999999999986531 122 789999999999999999988775 359999999999
Q ss_pred hhHHHHHHHHhcCCCCCeeeecCCcchHHHHHHHHHHHHHcCCCCEEEEeecCCCcCh
Q 011989 196 INMASGHVSMKYGFQGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDA 253 (473)
Q Consensus 196 ~~~~a~~ia~~lgl~Gp~~~v~~acasg~~Al~~A~~~I~~G~~d~vlv~g~d~~~~~ 253 (473)
.|.+++++++..+.++|+.++..+-.+...||..|+..+..| .+.||++.+|.....
T Consensus 90 HNA~aG~~sI~~~~~~~~tal~a~~~sf~~aLleA~~~l~~~-~~~VLlv~~De~~p~ 146 (218)
T PF13723_consen 90 HNAAAGYWSIATKNTGPNTALAAGEDSFEAALLEAAAQLAEG-AEPVLLVCYDEPLPE 146 (218)
T ss_pred hhHHHHHHHHHhCCCCceEEEecCcchHHHHHHHHHHHHHcC-CCCEEEEEeCCCCCh
Confidence 999999999999999999999999999999999999999999 899999999975443
|
|
| >TIGR01833 HMG-CoA-S_euk 3-hydroxy-3-methylglutaryl-CoA-synthase, eukaryotic clade | Back alignment and domain information |
|---|
Probab=99.08 E-value=3.4e-08 Score=100.44 Aligned_cols=116 Identities=10% Similarity=0.071 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCCCCCCceeEEEecCCCChhhHHHHHHHHHHhccccCCCcchhhhhhhHHHHHHHHhc
Q 011989 128 RFIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKY 207 (473)
Q Consensus 128 ~~~~la~~aa~~Al~dAgl~~~~~~~~~~~gvivg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~l 207 (473)
....|++.|++.+|+++++++++++ .|+++|..+.. .....+..|...|
T Consensus 49 d~~tma~~AA~~lL~~a~id~~~Id-----~Liv~TeS~~d--------------------------~sps~a~~v~~lL 97 (454)
T TIGR01833 49 DINSLCLTVVSKLMERYNIDYNQIG-----RLEVGTETIID--------------------------KSKSVKTVLMQLF 97 (454)
T ss_pred CHHHHHHHHHHHHHHHcCCCHHHCC-----EEEEECCCCCC--------------------------CCCchHHHHHHHH
Confidence 3578999999999999999887776 78888855321 1223445566544
Q ss_pred ---CCCC-CeeeecCCcchHHHHHHHHHHHHHcCCC--CEEEEeecCCCcChHHHHHHhhhhccccccCCCCCCCCcCcc
Q 011989 208 ---GFQG-PNHAAVTACATGAHSIGDAARMIQFGDS--DVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFD 281 (473)
Q Consensus 208 ---gl~G-p~~~v~~acasg~~Al~~A~~~I~~G~~--d~vlv~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pfd 281 (473)
|++. .++.+..+|+++..||..|..+|++|.. +.+||+++|.... +
T Consensus 98 ~~lG~~~~~~fDi~~AC~G~t~AL~~A~~~i~s~~~~~~~aLVV~sDia~y----------------------------~ 149 (454)
T TIGR01833 98 EESGNTDVEGIDTTNACYGGTAALFNAINWIESSSWDGRYALVVAGDIAVY----------------------------A 149 (454)
T ss_pred HhcCCCCceEEeccccchhHHHHHHHHHHHHHcCCcCCCeEEEEEeccccc----------------------------c
Confidence 4443 6788999999999999999999999974 8999999996111 1
Q ss_pred CCCCceeeccceEEEEEccch
Q 011989 282 CGRDGFVIGEGSGVLVLEELE 302 (473)
Q Consensus 282 ~~~~G~~~geGaaavvL~~~~ 302 (473)
....-...|+||+|+||+...
T Consensus 150 ~~~~~~t~GaGAvAmLv~~~~ 170 (454)
T TIGR01833 150 KGNARPTGGAGAVAMLIGPNA 170 (454)
T ss_pred CCCeeeccccceEEEEeccCc
Confidence 111122459999999998644
|
Hydroxymethylglutaryl(HMG)-CoA synthase is the first step of isopentenyl pyrophosphate (IPP) biosynthesis via the mevalonate pathway. This pathway is found mainly in eukaryotes, but also in archaea and some bacteria. This model is specific for eukaryotes. |
| >PF00108 Thiolase_N: Thiolase, N-terminal domain; InterPro: IPR020616 Two different types of thiolase [, , ] are found both in eukaryotes and in prokaryotes: acetoacetyl-CoA thiolase (2 | Back alignment and domain information |
|---|
Probab=98.93 E-value=2.2e-09 Score=102.49 Aligned_cols=95 Identities=27% Similarity=0.297 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCceeEEEecCCCChhhHHHHHHHHHHhccccCCCcchhhhhhhHHHHHHHHhcC
Q 011989 129 FIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYG 208 (473)
Q Consensus 129 ~~~la~~aa~~Al~dAgl~~~~~~~~~~~gvivg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lg 208 (473)
..+|+.++++++|+++++++++++ .|++|+...... ...++..++...|
T Consensus 26 ~~~L~~~a~~~al~~~~i~~~~Id-----~v~~G~~~~~~~--------------------------g~~~ar~~~l~aG 74 (264)
T PF00108_consen 26 PEDLAAEAVKAALERAGIDPEDID-----AVIVGNVLQEGE--------------------------GQNIARQAALAAG 74 (264)
T ss_dssp HHHHHHHHHHHHHHHHTSHGGGEE-----EEEEE-SSSCTT--------------------------TCHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhcccchhhhh-----hcCccccccccc--------------------------chhhhhhhhhhcc
Confidence 568999999999999999888887 899998653211 2234455666677
Q ss_pred CC--CCeeeecCCcchHHHHHHHHHHHHHcCCCCEEEEeecCCCcChH
Q 011989 209 FQ--GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDAL 254 (473)
Q Consensus 209 l~--Gp~~~v~~acasg~~Al~~A~~~I~~G~~d~vlv~g~d~~~~~~ 254 (473)
|. -|.++|+.+|+||+.||.+|++.|++|+.|++|++|+|+++...
T Consensus 75 l~~~vp~~~V~~~CaSG~~Av~~a~~~I~sG~~dvvlagGvE~mS~~p 122 (264)
T PF00108_consen 75 LPESVPATTVNRACASGLQAVHLAAMAIASGEADVVLAGGVESMSRVP 122 (264)
T ss_dssp S-TTSEEEEEE-GGGHHHHHHHHHHHHHHTTS-SEEEEEEEEETTTSC
T ss_pred cccccceeeehhhhhHHHHHHHHhhhhhcCCCccEEEEeccccccccc
Confidence 73 38999999999999999999999999999999999999976543
|
3.1.9 from EC) and 3-ketoacyl-CoA thiolase (2.3.1.16 from EC). 3-ketoacyl-CoA thiolase (also called thiolase I) has a broad chain-length specificity for its substrates and is involved in degradative pathways such as fatty acid beta-oxidation. Acetoacetyl-CoA thiolase (also called thiolase II) is specific for the thiolysis of acetoacetyl-CoA and involved in biosynthetic pathways such as poly beta-hydroxybutyrate synthesis or steroid biogenesis. In eukaryotes, there are two forms of 3-ketoacyl-CoA thiolase: one located in the mitochondrion and the other in peroxisomes. There are two conserved cysteine residues important for thiolase activity. The first located in the N-terminal section of the enzymes is involved in the formation of an acyl-enzyme intermediate; the second located at the C-terminal extremity is the active site base involved in deprotonation in the condensation reaction. Mammalian nonspecific lipid-transfer protein (nsL-TP) (also known as sterol carrier protein 2) is a protein which seems to exist in two different forms: a 14 Kd protein (SCP-2) and a larger 58 Kd protein (SCP-x). The former is found in the cytoplasm or the mitochondria and is involved in lipid transport; the latter is found in peroxisomes. The C-terminal part of SCP-x is identical to SCP-2 while the N-terminal portion is evolutionary related to thiolases [].; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0008152 metabolic process; PDB: 1PXT_B 1AFW_B 1WL4_A 1WL5_A 4E1L_B 1WDK_D 1WDM_D 2D3T_D 1WDL_C 2WUA_B .... |
| >COG3424 BcsA Predicted naringenin-chalcone synthase [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=98.93 E-value=2.7e-09 Score=99.20 Aligned_cols=192 Identities=15% Similarity=0.174 Sum_probs=131.5
Q ss_pred cCHHHHHHHHHHHHHHHHcCCCCCCCCCCCceeEEEecCCCChhhHHHHHHHHHHhccccCCCcchhhhhhhHHHHHHHH
Q 011989 126 IARFIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSM 205 (473)
Q Consensus 126 ~~~~~~la~~aa~~Al~dAgl~~~~~~~~~~~gvivg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~ 205 (473)
+.....+.+++.++||+.+++-+.|++ .|++.+++|- ..+.+-.+|..
T Consensus 73 ie~a~~l~v~a~r~aL~~~~l~pedId-----~vv~vtsTG~---------------------------~~Ps~dari~~ 120 (356)
T COG3424 73 IEEAVPLGVDALRRALDGSPLRPEDID-----AVVTVTSTGL---------------------------ATPSLDARIVG 120 (356)
T ss_pred HHHHHHHHHHHHHHHhccCCCCHHHCc-----EEEEEeeccc---------------------------cCCChhHHHHh
Confidence 344567999999999999999888876 6777766542 12334457888
Q ss_pred hcCCCCCeee---ecCCcchHHHHHHHHHHHHHcCCCCEEEEeecCCCcChHHHHHHhhhhccccccCCCCCCCCcCccC
Q 011989 206 KYGFQGPNHA---AVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDC 282 (473)
Q Consensus 206 ~lgl~Gp~~~---v~~acasg~~Al~~A~~~I~~G~~d~vlv~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pfd~ 282 (473)
.|||....-. ..-||+++..+|..|..+++..-...|||+.+|.++-... +.|.
T Consensus 121 ~Lgl~p~~~Rvpv~glGCaaga~glara~~y~ra~P~~~vlvV~vELCSLt~~-----------------------~~d~ 177 (356)
T COG3424 121 ELGLSPDTRRVPVWGLGCAAGAAGLARARDYCRAAPDANVLVVCVELCSLTYV-----------------------FADD 177 (356)
T ss_pred hcCCCCccceeeeecchhhhhhhHHHHHHHHHhhCccceEEEEEeeeeeeeee-----------------------cCCC
Confidence 9999753322 4569999999999999999999999999999997543221 0111
Q ss_pred CCCc----eeeccceEEEEEccchHHHhc-CCeE--E----------EEEEEEEEecCCCCC----CCCCCChHHHHHHH
Q 011989 283 GRDG----FVIGEGSGVLVLEELEHAKKR-GAKI--Y----------AEVRGYGMSGDAHHI----TQPHIDGKGAILAM 341 (473)
Q Consensus 283 ~~~G----~~~geGaaavvL~~~~~A~~~-g~~~--~----------a~i~g~~~~~d~~~~----~~~~~~~~~~~~a~ 341 (473)
.... -++|||++|+|+.-...+... ...+ + -.+.||.+..+|.+. ..|..-...+...+
T Consensus 178 t~s~lVgtaLF~DG~AA~vv~gd~~~~~~~~~~p~i~~s~StL~~dse~~Mgwdv~d~G~~~vlSrdlp~lIe~~l~~~V 257 (356)
T COG3424 178 TKSNLVGTALFGDGAAAVVVSGDRRAEGKRPLRPDILDSFSTLYPDSEDIMGWDVGDQGLKVVLSRDLPNLIESYLAPNV 257 (356)
T ss_pred CcccceeeeeecCCeeEEEEeccccccccCCCCceecccccccCCccccccceeecCCcEEEEEcCchhHHHHHHhhhhH
Confidence 1112 348999999999864332211 1111 1 125567776666542 12322234566778
Q ss_pred HHHHHHcCCCCCCccEEEEcCCCCCCCCHHH
Q 011989 342 TRALKQSGLQSHQVDYVNAHATSTPLGDTVE 372 (473)
Q Consensus 342 ~~al~~agl~~~dId~v~~hgtgt~~~D~~E 372 (473)
...|...+++.+||+.+.+|--|-+.-|+.|
T Consensus 258 ~~fL~~~~ls~~dI~~w~~HPGG~KVida~~ 288 (356)
T COG3424 258 TTFLATHGLSIEDIEAWVVHPGGPKVIDAYE 288 (356)
T ss_pred HHHHHHcCCchhhhceeeeCCCCchHHHHHH
Confidence 8999999999999999999977776655444
|
|
| >PLN00415 3-ketoacyl-CoA synthase | Back alignment and domain information |
|---|
Probab=98.75 E-value=9.3e-08 Score=96.51 Aligned_cols=120 Identities=13% Similarity=0.097 Sum_probs=84.7
Q ss_pred HHHHHHH-HHHHHHHHcCCCCCCCCCCCceeEEEecCCCChhhHHHHHHHHHHhccccCCCcchhhhhhhHHHHHHHHhc
Q 011989 129 FIAYALC-AADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKY 207 (473)
Q Consensus 129 ~~~la~~-aa~~Al~dAgl~~~~~~~~~~~gvivg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~l 207 (473)
..+|++. |+++||+++|+++++++ -|++.+ ++. ...+..+..+...+
T Consensus 133 e~em~i~~A~~~aL~~aGi~p~dID-----~LIvs~-T~~--------------------------~~~Pslaa~l~~~L 180 (466)
T PLN00415 133 ESELVIFGALNSLFKKTGIEPREVG-----IFIVNC-SLF--------------------------NPNPSLSSMIVNRY 180 (466)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHCC-----EEEEEC-cCC--------------------------CCCchHHHHHHHHh
Confidence 3455555 77788899999887775 444432 211 11245667899999
Q ss_pred CCCC--CeeeecC-CcchHHHHHHHHHHHHHcCCCCEEEEeecCCCcChHHHHHHhhhhccccccCCCCCCCCcCccCC-
Q 011989 208 GFQG--PNHAAVT-ACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCG- 283 (473)
Q Consensus 208 gl~G--p~~~v~~-acasg~~Al~~A~~~I~~G~~d~vlv~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pfd~~- 283 (473)
|++. ..+.+.. ||++++.+|..|.++++++....+||+++|.++..+. . +-|..
T Consensus 181 GLr~~v~~~dL~gmGCsggv~aL~lA~~ll~a~~~~~aLVVs~E~~S~~~~-~---------------------~~dr~~ 238 (466)
T PLN00415 181 KLKTDVKTYNLSGMGCSAGAISVDLATNLLKANPNTYAVIVSTENMTLSMY-R---------------------GNDRSM 238 (466)
T ss_pred CCCCCceEEEeccccchHHHHHHHHHHHHHHhCCCCEEEEEEEeccccccc-C---------------------CCcHhH
Confidence 9973 5677887 9999999999999999999999999999997432210 0 00000
Q ss_pred -CCceeeccceEEEEEccch
Q 011989 284 -RDGFVIGEGSGVLVLEELE 302 (473)
Q Consensus 284 -~~G~~~geGaaavvL~~~~ 302 (473)
-...++||||+|+||+...
T Consensus 239 lv~n~LFgDGAAAvlLs~~~ 258 (466)
T PLN00415 239 LVPNCLFRVGGAAVMLSNRS 258 (466)
T ss_pred hccceeecccceEEEEecCc
Confidence 0135689999999999753
|
|
| >PF00195 Chal_sti_synt_N: Chalcone and stilbene synthases, N-terminal domain; InterPro: IPR001099 Synonym(s): Chalcone synthase, Flavonone synthase, 6'-deoxychalcone synthase Naringenin-chalcone synthases (2 | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.6e-07 Score=86.32 Aligned_cols=124 Identities=16% Similarity=0.109 Sum_probs=82.4
Q ss_pred CHHHHHHHHHHHHHHHHcCCCCCCCCCCCceeEEEecCCCChhhHHHHHHHHHHhccccCCCcchhhhhhhHHHHHHHHh
Q 011989 127 ARFIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMK 206 (473)
Q Consensus 127 ~~~~~la~~aa~~Al~dAgl~~~~~~~~~~~gvivg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~ 206 (473)
.-...|+.+|+++||+++|+++.++. -||+.+++|- ..+.+-.+|...
T Consensus 98 ~~a~~L~~~Aa~~AL~~~g~~~~dIt-----hlv~vs~TG~---------------------------~~PglD~~l~~~ 145 (226)
T PF00195_consen 98 EEAPPLAEEAARKALAEAGLDPSDIT-----HLVTVSCTGI---------------------------AAPGLDARLINR 145 (226)
T ss_dssp HHHHHHHHHHHHHHHHHHTS-GGGEC-----EEEEEESSSS---------------------------ECS-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCCcccc-----eEEEEecCCc---------------------------CCCchhHHHHhc
Confidence 34567999999999999999877765 6777776543 223444578999
Q ss_pred cCCCCCe---eeecCCcchHHHHHHHHHHHHHcCCCCEEEEeecCCCcChHHHH-HHhhhhccccccCCCCCCCCcCccC
Q 011989 207 YGFQGPN---HAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMA-GFCKSRALTTKYNGTPQEASRPFDC 282 (473)
Q Consensus 207 lgl~Gp~---~~v~~acasg~~Al~~A~~~I~~G~~d~vlv~g~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~pfd~ 282 (473)
|||+... ....-||.+|..+|..|....++..-..|||+.+|.++-.+... .......+.
T Consensus 146 LgL~~~v~R~~i~~~GC~gg~~~L~~A~~~~~~~p~a~VLvv~vElcsl~~~~~~~~~~~~lv~---------------- 209 (226)
T PF00195_consen 146 LGLRPDVQRTPIFGMGCAGGAAGLRRAKDIARANPGARVLVVCVELCSLHFQAPNDDSLDNLVA---------------- 209 (226)
T ss_dssp HT--TTSEEEEEES-GGGHHHHHHHHHHHHHHHSTT-EEEEEEEEEGGGTHHHCCTTSHHHHHH----------------
T ss_pred CCCCCCcEEEEEeccchhhHHHHHHHHHHHHhCCccceEEEEEEEeeEEEEecCCcccHHHHhH----------------
Confidence 9998633 33567999999999999999999988999999999754322110 000011111
Q ss_pred CCCceeeccceEEEEEccc
Q 011989 283 GRDGFVIGEGSGVLVLEEL 301 (473)
Q Consensus 283 ~~~G~~~geGaaavvL~~~ 301 (473)
..++||||+|+||...
T Consensus 210 ---~aLFgDGaAA~vv~~d 225 (226)
T PF00195_consen 210 ---NALFGDGAAAVVVGAD 225 (226)
T ss_dssp ---HHHB-EEEEEEEEESS
T ss_pred ---HhhhcCCceEEEEccC
Confidence 2348999999999753
|
3.1.74 from EC) and stilbene synthases (STS) (formerly known as resveratrol synthases) are related plant enzymes. CHS is an important enzyme in flavanoid biosynthesis and STS is a key enzyme in stilbene-type phyloalexin biosynthesis. Both enzymes catalyse the addition of three molecules of malonyl-CoA to a starter CoA ester (a typical example is 4-coumaroyl-CoA), producing either a chalcone (with CHS) or stilbene (with STS) []. These enzymes have a conserved cysteine residue, located in the central section of the protein sequence, which is essential for the catalytic activity of both enzymes and probably represents the binding site for the 4-coumaryl-CoA group [].; GO: 0016746 transferase activity, transferring acyl groups, 0009058 biosynthetic process; PDB: 3EUO_B 3EUT_C 3EUQ_D 3E1H_A 3AWK_A 3AWJ_A 2H84_A 3A5S_A 3A5Q_B 3A5R_A .... |
| >PF08392 FAE1_CUT1_RppA: FAE1/Type III polyketide synthase-like protein; InterPro: IPR013601 This domain is found in proteins that are described as 3-ketoacyl-CoA synthases, type III polyketide synthases, fatty acid elongases and fatty acid condensing enzymes, and are found in both prokaryotic and eukaryotic (mainly plant) species | Back alignment and domain information |
|---|
Probab=98.51 E-value=5.6e-07 Score=85.00 Aligned_cols=125 Identities=16% Similarity=0.161 Sum_probs=91.5
Q ss_pred CHHHHHHHHHHHHHHHHcCCCCCCCCCCCceeEEEecCCCChhhHHHHHHHHHHhccccCCCcchhhhhhhHHHHHHHHh
Q 011989 127 ARFIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMK 206 (473)
Q Consensus 127 ~~~~~la~~aa~~Al~dAgl~~~~~~~~~~~gvivg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~ 206 (473)
+-...++..++.++|+.+|+.|.|++ .+++.++... ..+.++..|.+.
T Consensus 81 ~Eae~v~f~av~~LL~ktgv~p~dId-----iLVvncs~f~---------------------------ptPSLsamIvnr 128 (290)
T PF08392_consen 81 EEAEMVIFGAVDDLLAKTGVKPSDID-----ILVVNCSLFN---------------------------PTPSLSAMIVNR 128 (290)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHCC-----EEEEECcCCC---------------------------cCCcHHHHHHHH
Confidence 33456788899999999999888886 6666665421 234677789999
Q ss_pred cCCCCCeee--ec-CCcchHHHHHHHHHHHHHcCCCCEEEEeecCCCcChHHHHHHhhhhccccccCCCCCCCCcCccCC
Q 011989 207 YGFQGPNHA--AV-TACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCG 283 (473)
Q Consensus 207 lgl~Gp~~~--v~-~acasg~~Al~~A~~~I~~G~~d~vlv~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pfd~~ 283 (473)
||++.-..+ ++ .||++|+.+|.+|.++++.-.-..+||+.+|..+..+. .+-...-.+
T Consensus 129 ~~mr~di~~~nLsGMGCsAgliai~lA~~lL~~~p~~~ALVVstE~~s~~~Y-~G~~rsmlv------------------ 189 (290)
T PF08392_consen 129 YGMRSDIKSYNLSGMGCSAGLIAIDLAKDLLQAHPNSYALVVSTENISANWY-RGNDRSMLV------------------ 189 (290)
T ss_pred hCCCcCeeeecccCCcchhhHHHHHHHHHHHHhCCCcEEEEEEEeecccccc-cCCcHHHhh------------------
Confidence 999874444 33 48999999999999999999988999999998554331 111111111
Q ss_pred CCceeeccceEEEEEccchH
Q 011989 284 RDGFVIGEGSGVLVLEELEH 303 (473)
Q Consensus 284 ~~G~~~geGaaavvL~~~~~ 303 (473)
...++.+|++|+||.+...
T Consensus 190 -~NcLFr~GgAAvLLSn~~~ 208 (290)
T PF08392_consen 190 -SNCLFRMGGAAVLLSNKPS 208 (290)
T ss_pred -ccccccCCceeEEeecCcc
Confidence 2345899999999998654
|
The region contains the active site residues, as well as motifs involved in substrate binding []. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0006633 fatty acid biosynthetic process, 0016020 membrane |
| >PF08545 ACP_syn_III: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III; InterPro: IPR013751 Fatty acid synthesis (FAS) is a vital aspect of cellular physiology which can occur by two distinct pathways | Back alignment and domain information |
|---|
Probab=98.50 E-value=6.7e-08 Score=74.56 Aligned_cols=64 Identities=20% Similarity=0.264 Sum_probs=47.8
Q ss_pred eeecCCcchHHHHHHHHHHHHHcCCCCEEEEeecCCCcChHHHHHHhhhhccccccCCCCCCCCcCccCCCCceeeccce
Q 011989 214 HAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDGFVIGEGS 293 (473)
Q Consensus 214 ~~v~~acasg~~Al~~A~~~I~~G~~d~vlv~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pfd~~~~G~~~geGa 293 (473)
|.|..+|++++.||..|..+|++|.++.+||++.|....... +......+++||||
T Consensus 1 fDi~~~C~g~~~al~~A~~~i~~g~~~~~Lvv~~d~~s~~~~------------------------~~~~~~~~~~gDgA 56 (80)
T PF08545_consen 1 FDINQACAGFLYALDVAAALIASGRAKNALVVGGDRLSRIVD------------------------RTDRQTAFIFGDGA 56 (80)
T ss_dssp EEEE-GGGHHHHHHHHHHHHHHTTS-SEEEEEEEEEGGGGSH------------------------TTHHHHHTTB-EEE
T ss_pred CcccccchHHHHHHHHHHHHHhhccCCEEEEEeecccccccc------------------------ccccCcceeecchh
Confidence 457899999999999999999999999999999997433111 00112345799999
Q ss_pred EEEEEccc
Q 011989 294 GVLVLEEL 301 (473)
Q Consensus 294 aavvL~~~ 301 (473)
+|+||++.
T Consensus 57 aA~vl~~~ 64 (80)
T PF08545_consen 57 AAVVLSRD 64 (80)
T ss_dssp EEEEEEEE
T ss_pred eEEEEEec
Confidence 99999986
|
The FAS I pathway, which generally only produces palmitate, is found in eukaryotes and is performed either by a single polypeptide which contains all the reaction centres needed to form a fatty acid, or by two polypeptides which interact to form a multifunctional complex. The FAS II pathway, which is capable of producing many different fatty acids, is found in mitochondria, bacteria, plants and parasites, and is performed by many distinct proteins, each of which catalyses a single step within the pathway. The large diversity of products generated by this pathway is possible because the acyl carrier protein (ACP) intermediates are diffusible entities that can be diverted into other biosynthetic pathways []. 3-Oxoacyl-[acyl carrier protein (ACP)] synthase III catalyses the first condensation step within the FAS II pathway, using acetyl-CoA as the primer and malonyl-ACP as the acceptor, as shown below. |
| >PF07451 SpoVAD: Stage V sporulation protein AD (SpoVAD); InterPro: IPR010894 This family contains the bacterial stage V sporulation protein AD (SpoVAD), which is approximately 340 residues long | Back alignment and domain information |
|---|
Probab=98.17 E-value=2.3e-05 Score=73.76 Aligned_cols=190 Identities=18% Similarity=0.181 Sum_probs=104.7
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCceeEEEecCCCChhhHHHHHHHHHHhccccCCCcchhhhhhhHHHHHHHHhcC
Q 011989 129 FIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYG 208 (473)
Q Consensus 129 ~~~la~~aa~~Al~dAgl~~~~~~~~~~~gvivg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lg 208 (473)
..+|..+|+..||+.++++++|++ ++++... .+ ....+++.+..|+
T Consensus 51 E~~m~~~A~~~al~Ka~l~~~dId------~~~aGDL--------------------------ln--Q~i~s~f~ar~l~ 96 (329)
T PF07451_consen 51 ESKMQKEAVELALKKAGLKKEDID------YLFAGDL--------------------------LN--QIISSSFAARDLG 96 (329)
T ss_dssp HHHHHHHHHHHHHHHTT--GGG-S------EEEEEET--------------------------TC--CCCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCe------EEEehhh--------------------------hh--hhHHHHHHHHhcC
Confidence 357889999999999999766664 5555422 11 1233445677777
Q ss_pred CCCCeeeecCCcchHHHHHHHHHHHHHcCCCCEEEEeecCCCcChHHHHHHhhhhccccccCCCCCCCCcCccCCCCcee
Q 011989 209 FQGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDGFV 288 (473)
Q Consensus 209 l~Gp~~~v~~acasg~~Al~~A~~~I~~G~~d~vlv~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pfd~~~~G~~ 288 (473)
+ |-+-+-.+|++...+|.+|..+|..|-++.+|++.+....+...-..|... -+..||. ..-.
T Consensus 97 i--Pf~GlygACST~~e~l~laa~~vdgg~a~~vla~tSSH~~tAERQfR~P~E-----------yG~Qrp~----tAqw 159 (329)
T PF07451_consen 97 I--PFLGLYGACSTMMESLALAAMLVDGGFADYVLAATSSHFATAERQFRFPTE-----------YGGQRPP----TAQW 159 (329)
T ss_dssp ----EEEB--CCCHHHHHHHHHHHHHHTTS-SEEEEEEEE-CCHHHHHT---GG-----------GT----T----T--E
T ss_pred C--CccchhhHHHHHHHHHHHHHHHHhCCCcceEEEEeccccchhhhhccCchh-----------ccCCCCC----cccE
Confidence 6 888899999999999999999999999999999988775554432222110 0222222 2333
Q ss_pred eccceEEEEEccchHHHhcCCeEEEEEEEEEE--ecCCCCCCCCCCCh----HHHHHHHHHHHHHcCCCCCCccEEEEcC
Q 011989 289 IGEGSGVLVLEELEHAKKRGAKIYAEVRGYGM--SGDAHHITQPHIDG----KGAILAMTRALKQSGLQSHQVDYVNAHA 362 (473)
Q Consensus 289 ~geGaaavvL~~~~~A~~~g~~~~a~i~g~~~--~~d~~~~~~~~~~~----~~~~~a~~~al~~agl~~~dId~v~~hg 362 (473)
..-|++|+||.+... .| +|.+.-. ..| .+++.|...+ ++....|.+-|++.|.+|+|-|.|..-.
T Consensus 160 TVTGaGa~il~~~~~------~p--~It~~T~GkVvD-~G~~D~~nMGaAMAPAA~dTI~~h~~D~g~~p~dYDlIvTGD 230 (329)
T PF07451_consen 160 TVTGAGAAILSKEGS------GP--RITHATIGKVVD-MGIKDPNNMGAAMAPAAADTIEQHFKDTGRSPDDYDLIVTGD 230 (329)
T ss_dssp E--EEEEEEEESS--------SE--EEEEEE----B--SS---TT-HHHHHHHHHHHHHHHHHHHCT--GGG-SEEEESS
T ss_pred EEeceEEEEEecCCC------Cc--EEEEEEEEEEEE-cCCCCcccchhhHhHHHHHHHHHHHHHhCCChhhcCeEEecc
Confidence 567899999986432 23 2333221 111 1233444444 3345668889999999999999999863
Q ss_pred CCCCCCCHHHHHHHHHHhhcc
Q 011989 363 TSTPLGDTVEATAIRTVFSDH 383 (473)
Q Consensus 363 tgt~~~D~~E~~a~~~~~~~~ 383 (473)
.|. +-..-+.+++..+
T Consensus 231 Lg~-----vG~~il~~Ll~~~ 246 (329)
T PF07451_consen 231 LGK-----VGRKILRDLLKEK 246 (329)
T ss_dssp -HH-----HHHHHHHHHHHHT
T ss_pred hHH-----HHHHHHHHHHHHc
Confidence 331 1234456666544
|
This is one of six proteins encoded by the spoVA operon, which is transcribed exclusively in the forespore at about the time of dipicolinic acid (DPA) synthesis in the mother cell. The functions of the proteins encoded by the spoVA operon are unknown, but it has been suggested they are involved in DPA transport during sporulation [].; PDB: 3LMA_D 3LM6_A. |
| >PF01154 HMG_CoA_synt_N: Hydroxymethylglutaryl-coenzyme A synthase N terminal; InterPro: IPR013528 Synonym(s): 3-hydroxy-3-methylglutaryl-coenzyme A synthase, HMG-CoA synthase | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00013 Score=63.99 Aligned_cols=90 Identities=20% Similarity=0.221 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCceeEEEecCCCChhhHHHHHHHHHHhccccCCCcchhhhhhhHHHHHHHHhcC
Q 011989 129 FIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYG 208 (473)
Q Consensus 129 ~~~la~~aa~~Al~dAgl~~~~~~~~~~~gvivg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lg 208 (473)
..-|++.|++.+|++.+++++++. -+++||..+-.. .-.++.+|...||
T Consensus 53 ~vTmA~nAa~~ll~~~~id~~~Ig-----~l~vgTES~vD~--------------------------sKs~~t~v~~ll~ 101 (174)
T PF01154_consen 53 IVTMAANAAKPLLDRYNIDPDDIG-----RLIVGTESGVDK--------------------------SKSISTYVHQLLG 101 (174)
T ss_dssp HHHHHHHHHHTTHHHHT-HHHHEE-----EEEEE-SS-SBS--------------------------SS-HHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHcCCCHHHcc-----EEEEeccccccc--------------------------cccHHHHHHHHhC
Confidence 567999999999999887555443 467787443211 1135567888899
Q ss_pred CCCC----eeeecCCcchHHHHHHHHHHHHHcCCCC--EEEEeecCC
Q 011989 209 FQGP----NHAAVTACATGAHSIGDAARMIQFGDSD--VMVAGGTES 249 (473)
Q Consensus 209 l~Gp----~~~v~~acasg~~Al~~A~~~I~~G~~d--~vlv~g~d~ 249 (473)
+.+. .+-+-.+|-+|..||..|..+|+++..+ .+||+++|.
T Consensus 102 ~s~~~~~~~~e~k~ACygGTaAL~~a~~~v~s~~~~g~~aLVVasDi 148 (174)
T PF01154_consen 102 LSGNPDCRGVEMKQACYGGTAALQNAVNWVASSPWDGRKALVVASDI 148 (174)
T ss_dssp TTT-SSSEEEEEESGGGHHHHHHHHHHHHHCSTTSTTEEEEEEEEEE
T ss_pred cCCCCceeeeehhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccc
Confidence 8542 3557789999999999999999998755 999999996
|
Hydroxymethylglutaryl-CoA synthase (2.3.3.10 from EC) catalyses the condensation of acetyl-CoA with acetoacetyl-CoA to produce HMG-CoA and CoA, the second reaction in the mevalonate-dependent isoprenoid biosynthesis pathway. HMG-CoA synthase contains an important catalytic cysteine residue that acts as a nucleophile in the first step of the reaction: the acetylation of the enzyme by acetyl-CoA (its first substrate) to produce an acetyl-enzyme thioester, releasing the reduced coenzyme A. The subsequent nucleophilic attack on acetoacetyl-CoA (its second substrate) leads to the formation of HMG-CoA []. HMG-CoA synthase occurs in eukaryotes, archaea and certain bacteria []. In vertebrates, there are two isozymes located in different subcellular compartments: a cytosolic form that is the starting point of the mevalonate pathway (leads to cholesterol and other sterolic and isoprenoid compounds), and a mitochondrial form responsible for ketone body biosynthesis. HMG-CoA is also found in other eukaryotes such as insects, plants and fungi []. In bacteria, isoprenoid precursors are generally synthesised via an alternative, non-mevalonate pathway, however a number of Gram-positive pathogens utilise a mevalonate pathway involving HMG-CoA synthase that is parallel to that found in eukaryotes [, ]. This entry represents the N-terminal domain of HMG-CoA synthase enzymes from both eukaryotes and prokaryotes.; GO: 0004421 hydroxymethylglutaryl-CoA synthase activity, 0008299 isoprenoid biosynthetic process; PDB: 1X9E_B 2HDB_B 2WYA_C 2P8U_A 3V4X_A 3V4N_C 3LEH_A 1TXT_D 1TVZ_A 2FA0_A .... |
| >PF08541 ACP_syn_III_C: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal ; InterPro: IPR013747 This domain is found on 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III 2 | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.0091 Score=46.86 Aligned_cols=89 Identities=18% Similarity=0.174 Sum_probs=53.1
Q ss_pred HHHcCCCCCCccEEEEcCCCCCCCCHHHHHHHHHHhhcccCCCCceeeccccchhhhHHhHHHHHHHHHHHHHHhCccCC
Q 011989 345 LKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLAIHHGVAPL 424 (473)
Q Consensus 345 l~~agl~~~dId~v~~hgtgt~~~D~~E~~a~~~~~~~~~~~~~~~v~s~k~~~Gh~~~AsG~~~li~~~~~l~~~~ipp 424 (473)
|+++|++++|||++.+|-.+.+ -...+.+.++... ....... ..+||+.+|+-.+.|. ..++.+.+
T Consensus 1 L~~~g~~~~did~~i~hq~~~~-----~~~~~~~~lgi~~---~~~~~~~-~~~Gn~~sa~~~~~L~---~~~~~g~~-- 66 (90)
T PF08541_consen 1 LERAGLSPDDIDHFIPHQASKK-----ILDSIAKRLGIPP---ERFPDNL-AEYGNTGSASIPINLA---DALEEGRI-- 66 (90)
T ss_dssp HHHTT--GGGESEEEE-SSSHH-----HHHHHHHHHTS-G---GGBE-TH-HHH-B-GGGHHHHHHH---HHHHTTSS--
T ss_pred CccccCCHHHCCEEEeCCCCHH-----HHHHHHHHcCCcH---HHHHHHH-hccCcchhhhHHHHHH---HHHHcCCC--
Confidence 6899999999999999954332 2233555555332 1222233 7899999998776554 34444432
Q ss_pred CCCCCCCCCCCCCCCCccccCCCCCCcEEEEeccccccceeeEEEe
Q 011989 425 TLNLAKPDPIFNDNFMPLTASKDMPISAALSNSFGFGGTNASLLFT 470 (473)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~g~gG~~~~~vl~ 470 (473)
.+-..++.-++|.|.+.++++++
T Consensus 67 -----------------------~~Gd~vl~~~~G~G~~~~~~~~~ 89 (90)
T PF08541_consen 67 -----------------------KPGDRVLLVGFGAGFSWGAAVLR 89 (90)
T ss_dssp -----------------------CTTEEEEEEEEETTTEEEEEEEE
T ss_pred -----------------------CCCCEEEEEEEEhhheeEEEEEE
Confidence 12456777799999998888886
|
3.1.41 from EC, the enzyme responsible for initiating the chain of reactions of the fatty acid synthase in plants and bacteria. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0008610 lipid biosynthetic process; PDB: 3IL3_A 1ZOW_C 3GWE_B 3GWA_B 1UB7_B 3LED_B 2EBD_A 1HNJ_A 2EFT_B 1HN9_B .... |
| >KOG1393 consensus Hydroxymethylglutaryl-CoA synthase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=86.10 E-value=7.2 Score=38.51 Aligned_cols=113 Identities=15% Similarity=0.233 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCceeEEEecCCCChhhHHHHHHHHHHhccccCCCcchhhhhhhHHHHHHHHhcC
Q 011989 129 FIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYG 208 (473)
Q Consensus 129 ~~~la~~aa~~Al~dAgl~~~~~~~~~~~gvivg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lg 208 (473)
...|.+-++...++.-.++++.+. .+-||+.+-. +-.+. +=..+-+.|+
T Consensus 60 i~Sl~ltvvs~Lmery~i~~~~IG-----RLEVGTETii--DKSKS------------------------VKt~LMqLF~ 108 (462)
T KOG1393|consen 60 IISLSLTVVSRLMERYNIDPDSIG-----RLEVGTETII--DKSKS------------------------VKTVLMQLFE 108 (462)
T ss_pred hhhhhHHHHHHHHHHhCCChhhcc-----eEEecceecc--ccchH------------------------HHHHHHHHhh
Confidence 456777888999999999776554 4667773311 00000 1112233333
Q ss_pred CCC----CeeeecCCcchHHHHHHHHHHHHHcCCCC--EEEEeecCCCcChHHHHHHhhhhccccccCCCCCCCCcCccC
Q 011989 209 FQG----PNHAAVTACATGAHSIGDAARMIQFGDSD--VMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDC 282 (473)
Q Consensus 209 l~G----p~~~v~~acasg~~Al~~A~~~I~~G~~d--~vlv~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pfd~ 282 (473)
=.| ..+...+||=+|..||..|.++|.+-.-| .+||+..|...- +++.+||-.
T Consensus 109 ~sgNtdIEGiDttnACYGGtaALfnavnWiESssWDGr~aivV~gDIAvY--------------------~~G~aRpTG- 167 (462)
T KOG1393|consen 109 ESGNTDIEGIDTTNACYGGTAALFNAVNWIESSSWDGRYAIVVCGDIAVY--------------------AKGNARPTG- 167 (462)
T ss_pred hcCCCccccccccccccccHHHHHHHhhhhhhcccCCceeEEEEeeEEEe--------------------cCCCCCCCC-
Confidence 111 33456689999999999999999986444 777777775211 346677753
Q ss_pred CCCceeeccceEEEEEcc
Q 011989 283 GRDGFVIGEGSGVLVLEE 300 (473)
Q Consensus 283 ~~~G~~~geGaaavvL~~ 300 (473)
|-||.|+++..
T Consensus 168 -------GAgAVAmLIgP 178 (462)
T KOG1393|consen 168 -------GAGAVAMLIGP 178 (462)
T ss_pred -------CcceEEEEEcC
Confidence 56888888885
|
|
| >PRK06065 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=85.77 E-value=3.9 Score=41.50 Aligned_cols=98 Identities=18% Similarity=0.201 Sum_probs=56.3
Q ss_pred EEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEEEEcCCCCCCCCHH-HHHHHHHHhhcccCCCCcee
Q 011989 313 AEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTV-EATAIRTVFSDHATSGSLAF 391 (473)
Q Consensus 313 a~i~g~~~~~d~~~~~~~~~~~~~~~~a~~~al~~agl~~~dId~v~~hgtgt~~~D~~-E~~a~~~~~~~~~~~~~~~v 391 (473)
+.|.|++...-+.+... ....-..+++++||+++|++++|||.+.+..+........ -...+....+.. ..+.
T Consensus 11 vaIvG~g~t~~~~~~~~--~~~~L~~~A~~~Al~dagl~~~dID~~i~~~~~~~~~~~~~~a~~l~~~lG~~----~~~~ 84 (392)
T PRK06065 11 VAVIGAGLTLFRRRLLE--TPQELAWEAASKALDEAGLELKDIDCVVIGSAPDAFDGVHMKGEYLSHGSGGI----RKPV 84 (392)
T ss_pred eEEEEecccCCcCCCCC--CHHHHHHHHHHHHHHHcCCCHHHCCEEEEeccCCcccccccHHHHHHHHcCCC----CCCe
Confidence 46888887654443211 1133457899999999999999999987642211111000 111122222221 1232
Q ss_pred eccccchhhhHHhHHHHHHHHHHHHHHhCc
Q 011989 392 SSTKGAIGHLLGAAGAVEAIFAVLAIHHGV 421 (473)
Q Consensus 392 ~s~k~~~Gh~~~AsG~~~li~~~~~l~~~~ 421 (473)
..+ +..+++|...+..+..+++.|.
T Consensus 85 ~~V-----~~~gasG~~al~~A~~~I~sG~ 109 (392)
T PRK06065 85 SRV-----YVGGATGVMTAIAGWYHVASGL 109 (392)
T ss_pred EEE-----ecCchhHHHHHHHHHHHHhCCC
Confidence 222 3357788888888989998875
|
|
| >PRK08170 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=85.33 E-value=5.2 Score=41.09 Aligned_cols=101 Identities=15% Similarity=0.009 Sum_probs=57.4
Q ss_pred EEEEEEEEecCCCCCCCC-CC-ChHHHHHHHHHHHHHcCCCCCCccEEEEcCCCCCCCCH-HHHHHHHHHhhcccCCCCc
Q 011989 313 AEVRGYGMSGDAHHITQP-HI-DGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDT-VEATAIRTVFSDHATSGSL 389 (473)
Q Consensus 313 a~i~g~~~~~d~~~~~~~-~~-~~~~~~~a~~~al~~agl~~~dId~v~~hgtgt~~~D~-~E~~a~~~~~~~~~~~~~~ 389 (473)
+.|.|.+...-+.+...+ +. ...-...++++||+++||+++|||.+... +.++..+. .....+....+.. .++
T Consensus 5 v~Ivg~~rTp~g~~~g~~~~~~~~~L~~~A~~~Al~dAgl~~~dID~vi~g-~~~~~~~~~~~a~~v~~~lGl~---~~~ 80 (426)
T PRK08170 5 VYIVDGARTPFLKARGGPGPFSASDLAVAAGRALLNRQPFAPDDLDEVILG-CAMPSPDEANIARVVALRLGCG---EKV 80 (426)
T ss_pred EEEEecCCCCccCCCCCCCCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEE-eccCCCCcChHHHHHHHHhCcC---CCc
Confidence 456676655444322111 11 13445689999999999999999987653 22232221 1122233333331 123
Q ss_pred eeeccccchhhhHHhHHHHHHHHHHHHHHhCcc
Q 011989 390 AFSSTKGAIGHLLGAAGAVEAIFAVLAIHHGVA 422 (473)
Q Consensus 390 ~v~s~k~~~Gh~~~AsG~~~li~~~~~l~~~~i 422 (473)
|...+. ..+++|+..+..+..+++.|..
T Consensus 81 p~~~v~-----~~CaSg~~al~~A~~~I~sG~~ 108 (426)
T PRK08170 81 PAWTVQ-----RNCASGMQALDSAAANIALGRA 108 (426)
T ss_pred eeeecc-----chhhHHHHHHHHHHHHHHCCCC
Confidence 333332 2478888889999999987753
|
|
| >PRK06158 thiolase; Provisional | Back alignment and domain information |
|---|
Probab=85.20 E-value=4.4 Score=41.02 Aligned_cols=93 Identities=16% Similarity=0.113 Sum_probs=56.5
Q ss_pred EEEEEEEEecCCCCCCCCCCC-hHHHHHHHHHHHHHcCCCCCCccEEEEcCCCCCCCCHHHHHHHHHHhhcccCCCCcee
Q 011989 313 AEVRGYGMSGDAHHITQPHID-GKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAF 391 (473)
Q Consensus 313 a~i~g~~~~~d~~~~~~~~~~-~~~~~~a~~~al~~agl~~~dId~v~~hgtgt~~~D~~E~~a~~~~~~~~~~~~~~~v 391 (473)
+.|.|++...-+.+. ... ..-..+++++||+++||+++|||.+.+... ... .....+.+.++.. +.++
T Consensus 10 vaIvG~g~t~~~~~~---~~t~~eL~~eA~~~Al~dAgl~~~dID~iv~~~~-~~~---~~~~~la~~lGl~----~~~~ 78 (384)
T PRK06158 10 TAIVGAATAGLGEAP---GLSAMELLAQAAHRALADAGLTMADVDGLFTASP-DDA---LWGLSVAEYLGIR----PRFV 78 (384)
T ss_pred EEEEEeeeccceeCC---CCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEecC-CCC---CcHHHHHHHcCCC----Ceee
Confidence 568888876544331 122 244578999999999999999998876421 111 1112244444432 1222
Q ss_pred eccccchhhhHHhHHHHHHHHHHHHHHhCc
Q 011989 392 SSTKGAIGHLLGAAGAVEAIFAVLAIHHGV 421 (473)
Q Consensus 392 ~s~k~~~Gh~~~AsG~~~li~~~~~l~~~~ 421 (473)
. .-+..+++++..+..+...++.|.
T Consensus 79 ~-----~~~~g~~s~~~al~~A~~~I~sG~ 103 (384)
T PRK06158 79 D-----GTMIGGSSFLAHLLPAALALEAGL 103 (384)
T ss_pred c-----cccCccHHHHHHHHHHHHHHHcCC
Confidence 1 124567778888888888888775
|
|
| >PRK06059 lipid-transfer protein; Provisional | Back alignment and domain information |
|---|
Probab=84.70 E-value=5.9 Score=40.29 Aligned_cols=96 Identities=19% Similarity=0.101 Sum_probs=57.4
Q ss_pred EEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEEEEcCCCCC--CCCHHHHHHHHHHhhcccCCCCce
Q 011989 313 AEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTP--LGDTVEATAIRTVFSDHATSGSLA 390 (473)
Q Consensus 313 a~i~g~~~~~d~~~~~~~~~~~~~~~~a~~~al~~agl~~~dId~v~~hgtgt~--~~D~~E~~a~~~~~~~~~~~~~~~ 390 (473)
+.|.|++...-+.+. .....-...++++||+++||+++|||.+... +..+ .........+...++.. +++
T Consensus 6 v~Ivg~~~t~~~r~~---~~~~~La~~A~~~Al~dAgl~~~dId~vi~~-~~~~~~~~~~~~a~~va~~lG~~----~~~ 77 (399)
T PRK06059 6 VYILGAGMHPWGKWG---RDFVEYGVVAARAALADAGLDWRDVQLVVGA-DTIRNGYPGFVAGATFAQALGWN----GAP 77 (399)
T ss_pred EEEEEecccccCCCC---CCHHHHHHHHHHHHHHHcCCCHHHCCEEEEE-eccCCccCCccHHHHHHHHhCCC----CCc
Confidence 457777766544321 1113445788999999999999999998743 2111 11112223344444432 233
Q ss_pred eeccccchhhhHHhHHHHHHHHHHHHHHhCc
Q 011989 391 FSSTKGAIGHLLGAAGAVEAIFAVLAIHHGV 421 (473)
Q Consensus 391 v~s~k~~~Gh~~~AsG~~~li~~~~~l~~~~ 421 (473)
... =+..+++|+..+..+..+++.|.
T Consensus 78 ~~~-----v~~~Casg~~al~~A~~~I~sG~ 103 (399)
T PRK06059 78 VSS-----SYAACASGSQALQSARAQILAGL 103 (399)
T ss_pred eec-----ccchhHHHHHHHHHHHHHHHCCC
Confidence 322 24567788888888999998775
|
|
| >PLN02644 acetyl-CoA C-acetyltransferase | Back alignment and domain information |
|---|
Probab=84.08 E-value=6.2 Score=40.12 Aligned_cols=101 Identities=17% Similarity=0.135 Sum_probs=56.0
Q ss_pred EEEEEEEEecCCCCCC-CC-CCChHHHHHHHHHHHHHcCCCCCCccEEEE-cCCCCCCCCHHHHHHHHHHhhcccCCCCc
Q 011989 313 AEVRGYGMSGDAHHIT-QP-HIDGKGAILAMTRALKQSGLQSHQVDYVNA-HATSTPLGDTVEATAIRTVFSDHATSGSL 389 (473)
Q Consensus 313 a~i~g~~~~~d~~~~~-~~-~~~~~~~~~a~~~al~~agl~~~dId~v~~-hgtgt~~~D~~E~~a~~~~~~~~~~~~~~ 389 (473)
+.|.|++...-+.+.. .. ....+-...+++++|+++||+++|||.+.+ +......+ ......+....+.. ..+
T Consensus 3 v~IvG~~~Tp~g~~~~~~~~~~~~~L~~~a~~~al~dAgl~~~~ID~vv~g~~~~~~~~-~~~~~~~~~~~Gl~---~~~ 78 (394)
T PLN02644 3 VCIVGVARTPIGGFLGSLSSLSATELGSIAIQAALERAGVDPALVQEVFFGNVLSANLG-QAPARQAALGAGLP---PST 78 (394)
T ss_pred EEEEeeccCCccCCCCccCCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEEecCcCCcC-CcHHHHHHHhcCCC---CCC
Confidence 3566766554333211 00 111344578999999999999999999875 21111111 11111122222221 123
Q ss_pred eeeccccchhhhHHhHHHHHHHHHHHHHHhCcc
Q 011989 390 AFSSTKGAIGHLLGAAGAVEAIFAVLAIHHGVA 422 (473)
Q Consensus 390 ~v~s~k~~~Gh~~~AsG~~~li~~~~~l~~~~i 422 (473)
|..++ +..++||+..+..++.+++.|..
T Consensus 79 p~~~v-----~~~caSg~~av~~Aa~~I~sG~~ 106 (394)
T PLN02644 79 ICTTV-----NKVCASGMKAVMLAAQSIQLGIN 106 (394)
T ss_pred ceEEE-----eccchHHHHHHHHHHHHHHcCCC
Confidence 43333 34688999889999999887743
|
|
| >PRK12578 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=83.96 E-value=3.1 Score=42.13 Aligned_cols=98 Identities=16% Similarity=0.136 Sum_probs=58.0
Q ss_pred EEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEEEEcCCCCCCCC-HHHHHHHHHHhhcccCCCCcee
Q 011989 313 AEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGD-TVEATAIRTVFSDHATSGSLAF 391 (473)
Q Consensus 313 a~i~g~~~~~d~~~~~~~~~~~~~~~~a~~~al~~agl~~~dId~v~~hgtgt~~~D-~~E~~a~~~~~~~~~~~~~~~v 391 (473)
+.|.|++...-+.+... ...+-..++++++|+++||+++|||.+.+. +.++.++ ......+...++... ..+
T Consensus 3 v~IvG~g~t~~~~~~~~--~~~eLa~~A~~~AL~dAgi~~~dID~vi~g-~~~~~~~~~~~a~~v~~~lGl~~---~~~- 75 (385)
T PRK12578 3 VAVIGVGNSKFGRRDDV--SVQELAWESIKEALNDAGVSQTDIELVVVG-STAYRGIELYPAPIVAEYSGLTG---KVP- 75 (385)
T ss_pred eEEEeecccceeecCCC--CHHHHHHHHHHHHHHHcCCCHHHCCEEEEE-ecccccccCChHHHHHHHhCCCC---CCe-
Confidence 35777776543332211 112345689999999999999999998763 3332211 112233444444321 122
Q ss_pred eccccchhhhHHhHHHHHHHHHHHHHHhCcc
Q 011989 392 SSTKGAIGHLLGAAGAVEAIFAVLAIHHGVA 422 (473)
Q Consensus 392 ~s~k~~~Gh~~~AsG~~~li~~~~~l~~~~i 422 (473)
..+ +..+++|+..+..+...++.|..
T Consensus 76 ~~v-----~~~casg~~al~~A~~~I~sG~~ 101 (385)
T PRK12578 76 LRV-----EAMCATGLAASLTAYTAVASGLV 101 (385)
T ss_pred eEE-----eccCHHHHHHHHHHHHHHHCCCC
Confidence 111 34677888889899999988754
|
|
| >PRK06157 acetyl-CoA acetyltransferase; Validated | Back alignment and domain information |
|---|
Probab=83.09 E-value=5.1 Score=40.76 Aligned_cols=98 Identities=16% Similarity=0.150 Sum_probs=56.6
Q ss_pred EEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEEEEcCCCCC-CCCHHHHHHHHHHhhcccCCCCcee
Q 011989 313 AEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTP-LGDTVEATAIRTVFSDHATSGSLAF 391 (473)
Q Consensus 313 a~i~g~~~~~d~~~~~~~~~~~~~~~~a~~~al~~agl~~~dId~v~~hgtgt~-~~D~~E~~a~~~~~~~~~~~~~~~v 391 (473)
+.|.|++...-+..... ...+-...+++++|+++||+++|||.+.+ |+... .+.......+.+.++.. +.+.
T Consensus 9 v~IvG~g~tp~~~~~~~--~~~~L~~ea~~~AL~dagl~~~dID~v~v-g~~~~~~~~~~~~~~~a~~lGl~----~~~~ 81 (398)
T PRK06157 9 VAILGMGCTKFGERWDA--GAEDLMVEAFLEALADAGIEPKDIDAAWF-GTHYDEIGSGKSGTPLSRALRLP----NIPV 81 (398)
T ss_pred eEEEEeccccccccCCC--CHHHHHHHHHHHHHHHcCCCHHHCCEEEE-EeccccccccchhHHHHHHcCCC----CCCE
Confidence 45677765543322111 11344578999999999999999998765 22111 00111112233333321 1222
Q ss_pred eccccchhhhHHhHHHHHHHHHHHHHHhCcc
Q 011989 392 SSTKGAIGHLLGAAGAVEAIFAVLAIHHGVA 422 (473)
Q Consensus 392 ~s~k~~~Gh~~~AsG~~~li~~~~~l~~~~i 422 (473)
. .=+..+++|+..+..++.+++.|..
T Consensus 82 ~-----~v~~~c~sg~~ai~~A~~~I~sG~~ 107 (398)
T PRK06157 82 T-----RVENFCATGSEAFRGAVYAVASGAY 107 (398)
T ss_pred E-----EEecccHHHHHHHHHHHHHHHCCCC
Confidence 1 1255688999999999999998753
|
|
| >PRK09051 beta-ketothiolase; Provisional | Back alignment and domain information |
|---|
Probab=82.86 E-value=7.5 Score=39.50 Aligned_cols=101 Identities=16% Similarity=0.017 Sum_probs=56.7
Q ss_pred EEEEEEEEecCCCCCC-CCCCC-hHHHHHHHHHHHHHcCCCCCCccEEEEcCCCCCCC--CHHHHHHHHHHhhcccCCCC
Q 011989 313 AEVRGYGMSGDAHHIT-QPHID-GKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLG--DTVEATAIRTVFSDHATSGS 388 (473)
Q Consensus 313 a~i~g~~~~~d~~~~~-~~~~~-~~~~~~a~~~al~~agl~~~dId~v~~hgtgt~~~--D~~E~~a~~~~~~~~~~~~~ 388 (473)
++|.|.+...-+.... ..+.. ..-...+++++|+++|++++|||.+.+. +.++.+ +......+....+.. ..
T Consensus 5 v~Ivg~~rtp~g~~~g~~~~~~~~eL~~~A~~~AL~~agi~~~dID~vi~g-~~~~~~~~~~~~a~~~~~~~Gl~---~~ 80 (394)
T PRK09051 5 VVVVSGVRTAIGTFGGSLKDVAPTDLGATVVREALARAGVDPDQVGHVVFG-HVIPTEPRDMYLSRVAAINAGVP---QE 80 (394)
T ss_pred EEEEecccCCccCCCCcCCCCCHHHHHHHHHHHHHHHcCCCHHHcCEEEEe-eeccccCCCccHHHHHHHHcCCC---CC
Confidence 4566665544333211 11212 2345689999999999999999987653 222221 222222222222221 12
Q ss_pred ceeeccccchhhhHHhHHHHHHHHHHHHHHhCcc
Q 011989 389 LAFSSTKGAIGHLLGAAGAVEAIFAVLAIHHGVA 422 (473)
Q Consensus 389 ~~v~s~k~~~Gh~~~AsG~~~li~~~~~l~~~~i 422 (473)
.|...+ +..+++|+..+..+...++.|..
T Consensus 81 ~p~~~V-----~~aCaSg~~Al~~A~~~I~sG~~ 109 (394)
T PRK09051 81 TPAFNV-----NRLCGSGLQAIVSAAQAILLGDA 109 (394)
T ss_pred CceEEe-----cccchHHHHHHHHHHHHHHcCCC
Confidence 343333 45677888888888888887753
|
|
| >PRK06205 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=82.63 E-value=10 Score=38.67 Aligned_cols=100 Identities=11% Similarity=0.016 Sum_probs=56.0
Q ss_pred EEEEEEEEecCCCCCCC--CCCChHHHHHHHHHHHHHcCCCCCCccEEEEcCCCCCCCCHHH-HHHHHHHhhcccCCCCc
Q 011989 313 AEVRGYGMSGDAHHITQ--PHIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVE-ATAIRTVFSDHATSGSL 389 (473)
Q Consensus 313 a~i~g~~~~~d~~~~~~--~~~~~~~~~~a~~~al~~agl~~~dId~v~~hgtgt~~~D~~E-~~a~~~~~~~~~~~~~~ 389 (473)
+.|.|.+.+.-+..... .....+-...+++++|+++||+++|||.+..- +.++...... ...+....+.. ..+
T Consensus 4 v~Ivg~~rTpfgk~~g~~~~~~~~eLa~~A~~~AL~~agl~~~dID~vv~g-~~~~~~~~~~~a~~va~~~Gl~---~~~ 79 (404)
T PRK06205 4 AVICEPVRTPVGRFGGAFKDVPAEELAATVIRALVERTGIDPARIDDVIFG-QGYPNGEAPAIGRVAALDAGLP---VTV 79 (404)
T ss_pred eEEEEeecCCccCCCCccCCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEE-eccCCCCCChHHHHHHHHcCCC---CCC
Confidence 45666665554432111 11113445789999999999999999987643 2222221111 11122222221 123
Q ss_pred eeeccccchhhhHHhHHHHHHHHHHHHHHhCc
Q 011989 390 AFSSTKGAIGHLLGAAGAVEAIFAVLAIHHGV 421 (473)
Q Consensus 390 ~v~s~k~~~Gh~~~AsG~~~li~~~~~l~~~~ 421 (473)
|...+ +..+++|+..+..+...++.|.
T Consensus 80 p~~~V-----~~~CaSg~~Al~~A~~~I~sG~ 106 (404)
T PRK06205 80 PGMQL-----DRRCGSGLQAVITAAMQVQTGA 106 (404)
T ss_pred ceeeh-----hhhhhHHHHHHHHHHHHHHcCC
Confidence 33222 4567899999999999998775
|
|
| >PRK06365 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=82.45 E-value=7 Score=40.23 Aligned_cols=98 Identities=12% Similarity=-0.025 Sum_probs=56.9
Q ss_pred EEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEEEEcCCCCCCCCHH--HHHHHHHHhhcccCCCCce
Q 011989 313 AEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTV--EATAIRTVFSDHATSGSLA 390 (473)
Q Consensus 313 a~i~g~~~~~d~~~~~~~~~~~~~~~~a~~~al~~agl~~~dId~v~~hgtgt~~~D~~--E~~a~~~~~~~~~~~~~~~ 390 (473)
+.|.|++...-+.+....+ ..+-...++++||+++||+++|||.+.+. +.....+.. -...+....+.. ..+
T Consensus 18 VaIvG~g~Tpfgr~~~~~~-~~eL~~eA~~~Al~dagl~~~dID~vv~~-~~~~~~~g~~~~~~~~~~~lGl~----~~~ 91 (430)
T PRK06365 18 VYMVAAGVTKFDKASPYMD-FRERVKKAFDYAMNDAGLTLADIDGSVAS-YFSDHFQRQLLAGIMVQDYLGLV----PKP 91 (430)
T ss_pred EEEEEeeecCccccCCCCC-HHHHHHHHHHHHHHHcCCCHHHcCEEEEe-cccccccccchhhHHHHHhcCCC----CCc
Confidence 5678887665444221111 12445788999999999999999997653 221112110 011112222221 122
Q ss_pred eeccccchhhhHHhHHHHHHHHHHHHHHhCc
Q 011989 391 FSSTKGAIGHLLGAAGAVEAIFAVLAIHHGV 421 (473)
Q Consensus 391 v~s~k~~~Gh~~~AsG~~~li~~~~~l~~~~ 421 (473)
... -+..++||...+..++..++.|.
T Consensus 92 ~~~-----v~~~~aSg~~ai~~A~~~I~sG~ 117 (430)
T PRK06365 92 SKR-----IEGGGATGGLAFQAGYEEIASGR 117 (430)
T ss_pred eEE-----EeCCcHHHHHHHHHHHHHHHcCC
Confidence 222 24468899999999999998875
|
|
| >PRK08142 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=81.74 E-value=8.2 Score=39.13 Aligned_cols=94 Identities=16% Similarity=0.015 Sum_probs=57.4
Q ss_pred EEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEEEEcCCCCCCCCHHHHHHHHHHhhcccCCCCceee
Q 011989 313 AEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFS 392 (473)
Q Consensus 313 a~i~g~~~~~d~~~~~~~~~~~~~~~~a~~~al~~agl~~~dId~v~~hgtgt~~~D~~E~~a~~~~~~~~~~~~~~~v~ 392 (473)
+.|.|++...-+.+... + ...-..+++++||++|||+++|||.+...+ .. ... ....+.+.++.. +.++.
T Consensus 7 vaIvG~g~t~~~~~~~~-~-~~~L~~eA~~~Al~DAgl~~~dID~~~~~~-~~-~~~--~~~~~~~~lGl~----~~~~~ 76 (388)
T PRK08142 7 AYIVGAYEHPTRKAPDK-S-VAQLHAEVAKGALADAGLSLADVDGYFCAG-DA-PGL--GPASMVDYLGLK----LRHVD 76 (388)
T ss_pred EEEEEEeeccceeCCCC-C-HHHHHHHHHHHHHHHcCCCHHHCCEEEEcC-CC-CCc--cHHHHHHhCCCC----Ceeec
Confidence 46888887765443221 1 134457899999999999999999876532 11 111 111233444432 12332
Q ss_pred ccccchhhhHHhHHHHHHHHHHHHHHhCc
Q 011989 393 STKGAIGHLLGAAGAVEAIFAVLAIHHGV 421 (473)
Q Consensus 393 s~k~~~Gh~~~AsG~~~li~~~~~l~~~~ 421 (473)
. .+..+++|...+..++.+++.|.
T Consensus 77 ~-----v~~gg~s~~~a~~~A~~~I~sG~ 100 (388)
T PRK08142 77 S-----TETGGSSYLAHVGHAAQAIAAGK 100 (388)
T ss_pred c-----ccCCcHHHHHHHHHHHHHHHcCC
Confidence 2 24467888888888999998885
|
|
| >cd00327 cond_enzymes Condensing enzymes; Family of enzymes that catalyze a (decarboxylating or non-decarboxylating) Claisen-like condensation reaction | Back alignment and domain information |
|---|
Probab=81.25 E-value=9.5 Score=35.68 Aligned_cols=77 Identities=17% Similarity=0.053 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHcCCCCCCccEEEEcCCCCCCCCHHHHHHHHHHhhcccCCCCceeeccccchhhhHHhHHHHHHHHHHH
Q 011989 336 GAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAVL 415 (473)
Q Consensus 336 ~~~~a~~~al~~agl~~~dId~v~~hgtgt~~~D~~E~~a~~~~~~~~~~~~~~~v~s~k~~~Gh~~~AsG~~~li~~~~ 415 (473)
-...+++++|+++|++++|||.+....+.....-..-...+...++.. +.+...+ ....++++..+..+..
T Consensus 10 l~~~A~~~al~~ag~~~~~i~~li~~~~~~~~~~~~~a~~i~~~lg~~----~~~~~~i-----~~~C~s~~~al~~A~~ 80 (254)
T cd00327 10 LGFEAAEQAIADAGLSKGPIVGVIVGTTGGSGEFSGAAGQLAYHLGIS----GGPAYSV-----NQACATGLTALALAVQ 80 (254)
T ss_pred HHHHHHHHHHHHcCCCCCCceEEEEEECCCCccccHHHHHHHHHhCCC----CCCccee-----ccHhHHHHHHHHHHHH
Confidence 456889999999999999999987664322211122333455555432 1121111 2355677777777778
Q ss_pred HHHhCc
Q 011989 416 AIHHGV 421 (473)
Q Consensus 416 ~l~~~~ 421 (473)
.|+.+.
T Consensus 81 ~i~~g~ 86 (254)
T cd00327 81 QVQNGK 86 (254)
T ss_pred HHHCCC
Confidence 888764
|
Members are share strong structural similarity, and are involved in the synthesis and degradation of fatty acids, and the production of polyketides, a diverse group of natural products. |
| >PRK07801 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=81.03 E-value=7.5 Score=39.32 Aligned_cols=101 Identities=11% Similarity=0.004 Sum_probs=54.5
Q ss_pred EEEEEEEEecCCCCCCC--CCCChHHHHHHHHHHHHHcCCCCCCccEEEEcCCCCCCCCH--HHHHHHHHHhhcccCCCC
Q 011989 313 AEVRGYGMSGDAHHITQ--PHIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDT--VEATAIRTVFSDHATSGS 388 (473)
Q Consensus 313 a~i~g~~~~~d~~~~~~--~~~~~~~~~~a~~~al~~agl~~~dId~v~~hgtgt~~~D~--~E~~a~~~~~~~~~~~~~ 388 (473)
+.|.|++...-+.+... ......-...+++++|+++|++++|||.+.+ |+....+.. .-.... .+. ..+...
T Consensus 4 v~Ivg~~~Tpf~~~~~~~~~~~~~~L~~~a~~~al~dagl~~~~ID~vv~-g~~~~~~~~~~~~~~~~--~l~-~gl~~~ 79 (382)
T PRK07801 4 AYIVDAVRTPVGKRKGGLAGVHPADLGAHVLKGLVDRTGIDPAAVDDVIF-GCVDTIGPQAGNIARTS--WLA-AGLPEE 79 (382)
T ss_pred eEEEecccCCccCCCCccCCCCHHHHHHHHHHHHHHHcCCCHHHcCEEEE-EeeccCCcccccHHHHH--HHH-cCCCCC
Confidence 35667665543332110 0112344578999999999999999998875 321111110 001111 111 111111
Q ss_pred ceeeccccchhhhHHhHHHHHHHHHHHHHHhCcc
Q 011989 389 LAFSSTKGAIGHLLGAAGAVEAIFAVLAIHHGVA 422 (473)
Q Consensus 389 ~~v~s~k~~~Gh~~~AsG~~~li~~~~~l~~~~i 422 (473)
++.. .=+..++||+..+..++.+++.|..
T Consensus 80 ~p~~-----~v~~acaSg~~Av~~Aa~~I~sG~~ 108 (382)
T PRK07801 80 VPGV-----TVDRQCGSSQQAIHFAAQAVMSGTQ 108 (382)
T ss_pred Ccee-----eecchhhhHHHHHHHHHHHHHCCCC
Confidence 2221 1244688999999999999988764
|
|
| >PRK05790 putative acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=80.83 E-value=9.6 Score=38.69 Aligned_cols=101 Identities=15% Similarity=0.040 Sum_probs=54.6
Q ss_pred EEEEEEEEecCCCCCCC--CCCChHHHHHHHHHHHHHcCCCCCCccEEEEcCCCCCCCC-HHHHHHHHHHhhcccCCCCc
Q 011989 313 AEVRGYGMSGDAHHITQ--PHIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGD-TVEATAIRTVFSDHATSGSL 389 (473)
Q Consensus 313 a~i~g~~~~~d~~~~~~--~~~~~~~~~~a~~~al~~agl~~~dId~v~~hgtgt~~~D-~~E~~a~~~~~~~~~~~~~~ 389 (473)
+.|.|.+...-+.+... ......-...++++||+++||+++|||.+... +.++.++ ......+....+.. ...
T Consensus 4 v~IvG~~~tp~~r~~g~~~~~~~~~La~~A~~~AL~dAgl~~~dID~vi~g-~~~~~~~~~~~~~~~~~~~gl~---~~~ 79 (393)
T PRK05790 4 VVIVSAARTPIGKFGGALKDVSAVELGAIVIKAALERAGVPPEQVDEVIMG-QVLQAGAGQNPARQAALKAGLP---VEV 79 (393)
T ss_pred eEEEeeecCCccCCCCCCCCCCHHHHHHHHHHHHHHHcCCCHHHCCeEEEE-EecCCCCCCcHHHHHHHHcCCC---CCC
Confidence 45777776554432110 11123345688999999999999999987642 2221111 11111121111211 112
Q ss_pred eeeccccchhhhHHhHHHHHHHHHHHHHHhCcc
Q 011989 390 AFSSTKGAIGHLLGAAGAVEAIFAVLAIHHGVA 422 (473)
Q Consensus 390 ~v~s~k~~~Gh~~~AsG~~~li~~~~~l~~~~i 422 (473)
+...+ +..+++|+..+..+..+++.|..
T Consensus 80 ~~~~v-----~~~Casg~~al~~A~~~I~sG~~ 107 (393)
T PRK05790 80 PALTI-----NKVCGSGLKAVALAAQAIRAGDA 107 (393)
T ss_pred ceeee-----cccchHHHHHHHHHHHHHHcCCC
Confidence 22211 23677888888888888887753
|
|
| >PRK07855 lipid-transfer protein; Provisional | Back alignment and domain information |
|---|
Probab=80.67 E-value=8.7 Score=38.90 Aligned_cols=93 Identities=23% Similarity=0.207 Sum_probs=55.4
Q ss_pred EEEEEEEEecCCCCCCCCCCC-hHHHHHHHHHHHHHcCCCCCCccEEEEcCCCCCCCCHHHHHHHHHHhhcccCCCCcee
Q 011989 313 AEVRGYGMSGDAHHITQPHID-GKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAF 391 (473)
Q Consensus 313 a~i~g~~~~~d~~~~~~~~~~-~~~~~~a~~~al~~agl~~~dId~v~~hgtgt~~~D~~E~~a~~~~~~~~~~~~~~~v 391 (473)
+.|.|++...-+.+. ... ..-..+++++||++|||+++|||.+...... ... ...+.+.++.. ...++
T Consensus 6 v~IvG~g~t~~~r~~---~~~~~~L~~eA~~~Al~DAgl~~~dID~~~~~~~~--~~~---~~~l~~~lGl~---~~~~~ 74 (386)
T PRK07855 6 AAIVGIGATEFSKNS---GRSELRLACEAVLAALDDAGLAPSDVDGLVTFTMD--TNP---EIAVARALGIG---ELKFF 74 (386)
T ss_pred EEEEEeeecccccCC---CCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEecCc--ccc---HHHHHHHCCCC---CCcce
Confidence 468888875433331 222 2345789999999999999999988753221 111 12233434432 11222
Q ss_pred eccccchhhhHHhHHHHHHHHHHHHHHhCc
Q 011989 392 SSTKGAIGHLLGAAGAVEAIFAVLAIHHGV 421 (473)
Q Consensus 392 ~s~k~~~Gh~~~AsG~~~li~~~~~l~~~~ 421 (473)
..+ +..+++|...+..++..++.|.
T Consensus 75 ~~v-----~~gg~sg~~~~~~A~~~I~sG~ 99 (386)
T PRK07855 75 SRI-----HYGGGAACATVQQAAMAVATGV 99 (386)
T ss_pred eee-----cCCcHHHHHHHHHHHHHHHCCC
Confidence 222 3457788777888888888774
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 473 | ||||
| 1w0i_A | 431 | Arabidopsis Thaliana Mitochondrial Kas Length = 431 | 1e-177 | ||
| 3kzu_A | 428 | Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protei | 5e-94 | ||
| 2iwy_A | 438 | Human Mitochondrial Beta-ketoacyl Acp Synthase Leng | 6e-93 | ||
| 2c9h_A | 444 | Structure Of Mitochondrial Beta-Ketoacyl Synthase L | 9e-92 | ||
| 1j3n_A | 408 | Crystal Structure Of 3-Oxoacyl-(Acyl-Carrier Protei | 2e-91 | ||
| 3e60_A | 424 | Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protei | 6e-89 | ||
| 4ddo_A | 451 | Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Protei | 5e-84 | ||
| 4f32_A | 451 | Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Protei | 7e-83 | ||
| 2gqd_A | 437 | The Crystal Structure Of B-Ketoacyl-Acp Synthase Ii | 1e-74 | ||
| 2gfw_A | 427 | Structure Of Wild Type E. Coli Fabf (Kasii) Length | 1e-74 | ||
| 1b3n_A | 412 | Beta-Ketoacyl Carrier Protein Synthase As A Drug Ta | 2e-74 | ||
| 1e5m_A | 416 | Beta Ketoacyl Acyl Carrier Protein Synthase Ii (Kas | 2e-74 | ||
| 2gfy_A | 427 | Structure Of E. Coli Fabf(K335a) Mutant With Covale | 7e-74 | ||
| 3hnz_A | 427 | Structure Of E. Coli Fabf(C163a) In Complex With Pl | 2e-73 | ||
| 2gfv_A | 427 | Structure Of E. Coli Fabf (Kasii) C163q Mutant Leng | 5e-73 | ||
| 3o04_A | 413 | Crystal Structure Of The Beta-Keto-Acyl Carrier Pro | 4e-70 | ||
| 1ox0_A | 430 | The Crystal Structure Of Beta-Ketoacyl-[acyl Carrie | 2e-58 | ||
| 2alm_A | 431 | Crystal Structure Analysis Of A Mutant Beta-Ketoacy | 2e-57 | ||
| 2rjt_A | 428 | Crystal Structure Analysis Of A Surface Entropy Red | 4e-57 | ||
| 3lrf_A | 428 | Crystal Structure Of Beta-Ketoacyl Synthase From Br | 2e-49 | ||
| 3u0f_A | 411 | The Structure Of Beta-Ketoacyl Synthase From Brucel | 3e-49 | ||
| 2wgd_A | 416 | Crystal Structure Of Kasa Of Mycobacterium Tubercul | 1e-47 | ||
| 2wgf_A | 416 | Crystal Structure Of Mycobacterium Tuberculosis C17 | 3e-46 | ||
| 1fj4_A | 406 | The Structure Of Beta-Ketoacyl-[acyl Carrier Protei | 2e-45 | ||
| 1dd8_A | 406 | Crystal Structure Of Beta-Ketoacyl-[acyl Carrier Pr | 2e-45 | ||
| 1h4f_A | 406 | E. Coli Beta-Ketoacyl [acyl Carrier Protein] Syntha | 3e-45 | ||
| 2byw_A | 418 | Structure Of Escherichia Coli Beta-Ketoacyl (Acyl C | 8e-45 | ||
| 2byz_A | 418 | Structure Of E. Coli Kas I H298q Mutant In Complex | 1e-44 | ||
| 2byy_A | 418 | E. Coli Kas I H298e Mutation Length = 418 | 1e-44 | ||
| 1ek4_A | 418 | Beta-Ketoacyl [acyl Carrier Protein] Synthase I In | 5e-42 | ||
| 2vb7_C | 406 | Beta-Ketoacyl-Acp Synthase I (Kas) From E. Coli, Ap | 6e-42 | ||
| 1f91_A | 406 | Beta-Ketoacyl-[acyl-Carrier-Protein] Synthase I In | 6e-42 | ||
| 2gp6_A | 434 | X-Ray Crystal Structure Of Mycobacterium Tuberculos | 6e-41 | ||
| 3oyt_A | 410 | 1.84 Angstrom Resolution Crystal Structure Of 3-Oxo | 6e-39 | ||
| 1tqy_A | 424 | The Actinorhodin KetosynthaseCHAIN LENGTH FACTOR Le | 2e-34 | ||
| 4ewg_A | 412 | Crystal Structure Of A Beta-Ketoacyl Synthase From | 1e-31 | ||
| 2qo3_A | 915 | Crystal Structure Of [ks3][at3] Didomain From Modul | 1e-16 | ||
| 2hg4_A | 917 | Structure Of The Ketosynthase-acyltransferase Didom | 4e-16 | ||
| 3hhd_A | 965 | Structure Of The Human Fatty Acid Synthase Ks-Mat D | 5e-09 | ||
| 1tqy_B | 415 | The Actinorhodin KetosynthaseCHAIN LENGTH FACTOR Le | 7e-09 | ||
| 2vz8_A | 2512 | Crystal Structure Of Mammalian Fatty Acid Synthase | 1e-08 | ||
| 3zen_D | 3089 | Cryo-em Structure Of The Mycobacterial Fatty Acid S | 4e-06 |
| >pdb|1W0I|A Chain A, Arabidopsis Thaliana Mitochondrial Kas Length = 431 | Back alignment and structure |
|
| >pdb|3KZU|A Chain A, Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protein) Synthase Ii From Brucella Melitensis Length = 428 | Back alignment and structure |
|
| >pdb|2IWY|A Chain A, Human Mitochondrial Beta-ketoacyl Acp Synthase Length = 438 | Back alignment and structure |
|
| >pdb|2C9H|A Chain A, Structure Of Mitochondrial Beta-Ketoacyl Synthase Length = 444 | Back alignment and structure |
|
| >pdb|1J3N|A Chain A, Crystal Structure Of 3-Oxoacyl-(Acyl-Carrier Protein) Synthase Ii From Thermus Thermophilus Hb8 Length = 408 | Back alignment and structure |
|
| >pdb|3E60|A Chain A, Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protein) Synthase Ii From Bartonella Henselae Length = 424 | Back alignment and structure |
|
| >pdb|4DDO|A Chain A, Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Protein] Synthase Ii From Burkholderia Vietnamiensis Length = 451 | Back alignment and structure |
|
| >pdb|4F32|A Chain A, Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Protein] Synthase Ii From Burkholderia Vietnamiensis In Complex With Platencin Length = 451 | Back alignment and structure |
|
| >pdb|2GQD|A Chain A, The Crystal Structure Of B-Ketoacyl-Acp Synthase Ii (Fabf) From Staphylococcus Aureus Length = 437 | Back alignment and structure |
|
| >pdb|2GFW|A Chain A, Structure Of Wild Type E. Coli Fabf (Kasii) Length = 427 | Back alignment and structure |
|
| >pdb|1B3N|A Chain A, Beta-Ketoacyl Carrier Protein Synthase As A Drug Target, Implications From The Crystal Structure Of A Complex With The Inhibitor Cerulenin. Length = 412 | Back alignment and structure |
|
| >pdb|1E5M|A Chain A, Beta Ketoacyl Acyl Carrier Protein Synthase Ii (Kasii) From Synechocystis Sp Length = 416 | Back alignment and structure |
|
| >pdb|2GFY|A Chain A, Structure Of E. Coli Fabf(K335a) Mutant With Covalently Linked Dodecanoic Acid Length = 427 | Back alignment and structure |
|
| >pdb|3HNZ|A Chain A, Structure Of E. Coli Fabf(C163a) In Complex With Platensimycin Length = 427 | Back alignment and structure |
|
| >pdb|2GFV|A Chain A, Structure Of E. Coli Fabf (Kasii) C163q Mutant Length = 427 | Back alignment and structure |
|
| >pdb|3O04|A Chain A, Crystal Structure Of The Beta-Keto-Acyl Carrier Protein Synthase Ii (Lmo2201) From Listeria Monocytogenes Length = 413 | Back alignment and structure |
|
| >pdb|1OX0|A Chain A, The Crystal Structure Of Beta-Ketoacyl-[acyl Carrier Protein] Synthase Ii From Streptococcus Pneumoniae Length = 430 | Back alignment and structure |
|
| >pdb|2ALM|A Chain A, Crystal Structure Analysis Of A Mutant Beta-Ketoacyl-[acyl Carrier Protein] Synthase Ii From Streptococcus Pneumoniae Length = 431 | Back alignment and structure |
|
| >pdb|2RJT|A Chain A, Crystal Structure Analysis Of A Surface Entropy Reduction Mutant Of S. Pneumoniae Fabf Length = 428 | Back alignment and structure |
|
| >pdb|3LRF|A Chain A, Crystal Structure Of Beta-Ketoacyl Synthase From Brucella Melitensis Length = 428 | Back alignment and structure |
|
| >pdb|3U0F|A Chain A, The Structure Of Beta-Ketoacyl Synthase From Brucella Melitensis Bound To The Fragment 7-Hydroxycoumarin Length = 411 | Back alignment and structure |
|
| >pdb|2WGD|A Chain A, Crystal Structure Of Kasa Of Mycobacterium Tuberculosis Length = 416 | Back alignment and structure |
|
| >pdb|2WGF|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa Variant Length = 416 | Back alignment and structure |
|
| >pdb|1FJ4|A Chain A, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein] Synthase I In Complex With Thiolactomycin, Implications For Drug Design Length = 406 | Back alignment and structure |
|
| >pdb|1DD8|A Chain A, Crystal Structure Of Beta-Ketoacyl-[acyl Carrier Protein] Synthase I From Escherichia Coli Length = 406 | Back alignment and structure |
|
| >pdb|1H4F|A Chain A, E. Coli Beta-Ketoacyl [acyl Carrier Protein] Synthase I K328r Length = 406 | Back alignment and structure |
|
| >pdb|2BYW|A Chain A, Structure Of Escherichia Coli Beta-Ketoacyl (Acyl Carrier Protein) Synthase I Lys328ala Mutant Length = 418 | Back alignment and structure |
|
| >pdb|2BYZ|A Chain A, Structure Of E. Coli Kas I H298q Mutant In Complex With C12 Fatty Acid Length = 418 | Back alignment and structure |
|
| >pdb|2BYY|A Chain A, E. Coli Kas I H298e Mutation Length = 418 | Back alignment and structure |
|
| >pdb|1EK4|A Chain A, Beta-Ketoacyl [acyl Carrier Protein] Synthase I In Complex With Dodecanoic Acid To 1.85 Resolution Length = 418 | Back alignment and structure |
|
| >pdb|2VB7|C Chain C, Beta-Ketoacyl-Acp Synthase I (Kas) From E. Coli, Apo Structure After Soak In Peg Solution Length = 406 | Back alignment and structure |
|
| >pdb|1F91|A Chain A, Beta-Ketoacyl-[acyl-Carrier-Protein] Synthase I In Complex With C10 Fatty Acid Substrate Length = 406 | Back alignment and structure |
|
| >pdb|2GP6|A Chain A, X-Ray Crystal Structure Of Mycobacterium Tuberculosis Beta- Ketoacyl Acyl Carrier Protein Synthase Ii (Mtkasb) Length = 434 | Back alignment and structure |
|
| >pdb|3OYT|A Chain A, 1.84 Angstrom Resolution Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protein) Synthase I (Fabb) From Yersinia Pestis Co92 Length = 410 | Back alignment and structure |
|
| >pdb|1TQY|A Chain A, The Actinorhodin KetosynthaseCHAIN LENGTH FACTOR Length = 424 | Back alignment and structure |
|
| >pdb|4EWG|A Chain A, Crystal Structure Of A Beta-Ketoacyl Synthase From Burkholderia Phymatum Stm815 Length = 412 | Back alignment and structure |
|
| >pdb|2QO3|A Chain A, Crystal Structure Of [ks3][at3] Didomain From Module 3 Of 6- Deoxyerthronolide B Synthase Length = 915 | Back alignment and structure |
|
| >pdb|2HG4|A Chain A, Structure Of The Ketosynthase-acyltransferase Didomain Of Module 5 From Debs. Length = 917 | Back alignment and structure |
|
| >pdb|3HHD|A Chain A, Structure Of The Human Fatty Acid Synthase Ks-Mat Didomain As A Framework For Inhibitor Design. Length = 965 | Back alignment and structure |
|
| >pdb|1TQY|B Chain B, The Actinorhodin KetosynthaseCHAIN LENGTH FACTOR Length = 415 | Back alignment and structure |
|
| >pdb|2VZ8|A Chain A, Crystal Structure Of Mammalian Fatty Acid Synthase Length = 2512 | Back alignment and structure |
|
| >pdb|3ZEN|D Chain D, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase Length = 3089 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2ix4_A 3-oxoacyl-[acyl-carrier-protein] synthase; beta-ketoacyl-(acyl carrier protein) synthase, lipid metabol condensing enzyme; 1.95A {Arabidopsis thaliana} SCOP: c.95.1.1 c.95.1.1 PDB: 1w0i_A Length = 431 | Back alignment and structure |
|---|
Score = 679 bits (1754), Expect = 0.0
Identities = 337/433 (77%), Positives = 384/433 (88%), Gaps = 3/433 (0%)
Query: 39 RRVVVTGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSK 98
RRVVVTG+GMVTPLG G ETTWRRLI GECGIR +T +DLKM +FD ET+L+ F QL+SK
Sbjct: 1 RRVVVTGLGMVTPLGRGVETTWRRLIDGECGIRGLTLDDLKMKSFDEETKLYTFDQLSSK 60
Query: 99 VAAVVPCGISSGEFNEDSWLNSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERTG 158
VAA VP G + GEF+E WL + +++A FI YA+CAADEAL DA+WLP+++ +KERTG
Sbjct: 61 VAAFVPYGSNPGEFDEALWL---NSKAVANFIGYAVCAADEALRDAEWLPTEEEEKERTG 117
Query: 159 VSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYGFQGPNHAAVT 218
VSIGGGIGSI D V+AAQ+ICEKRLRRLSPFFIP+IL+NMASGHVSMKYGFQGPNHAAVT
Sbjct: 118 VSIGGGIGSICDIVEAAQLICEKRLRRLSPFFIPKILVNMASGHVSMKYGFQGPNHAAVT 177
Query: 219 ACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASR 278
ACATGAHSIGDA RMIQFGD+DVMVAGGTESSIDALS+AGF +SRAL+TK+N +PQEASR
Sbjct: 178 ACATGAHSIGDATRMIQFGDADVMVAGGTESSIDALSVAGFSRSRALSTKFNSSPQEASR 237
Query: 279 PFDCGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAI 338
PFDC RDGFVIGEGSGV+VLEE EHAK+RGAKIYAE+ GYGMSGDAHHITQP DGKGA+
Sbjct: 238 PFDCDRDGFVIGEGSGVIVLEEYEHAKRRGAKIYAELCGYGMSGDAHHITQPPEDGKGAV 297
Query: 339 LAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKGAI 398
LAMTRAL+QSGL +Q+DYVNAHATSTP+GD VEA AI+TVFS+HATSG+LAFSSTKGA
Sbjct: 298 LAMTRALRQSGLCPNQIDYVNAHATSTPIGDAVEARAIKTVFSEHATSGTLAFSSTKGAT 357
Query: 399 GHLLGAAGAVEAIFAVLAIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPISAALSNSF 458
GHLLGAAGAVEAIF++LAIHHGVAP+TLN+ PDPIF+ FMPLT SK M + A+SNSF
Sbjct: 358 GHLLGAAGAVEAIFSILAIHHGVAPMTLNVKNPDPIFDKRFMPLTTSKKMLVRTAMSNSF 417
Query: 459 GFGGTNASLLFTK 471
GFGGTNASLLF
Sbjct: 418 GFGGTNASLLFAS 430
|
| >3kzu_A 3-oxoacyl-(acyl-carrier-protein) synthase II; seattle structural genomics center for infectious disease, ssgcid, acyltransferase; 1.75A {Brucella melitensis} PDB: 3e60_A Length = 428 | Back alignment and structure |
|---|
Score = 649 bits (1676), Expect = 0.0
Identities = 226/441 (51%), Positives = 293/441 (66%), Gaps = 19/441 (4%)
Query: 32 PPPLSPLRRVVVTGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHA 91
+RRVV+TG+G+V+PL G E TW+RL+ GE G R +T F+ +
Sbjct: 3 HHHHHHMRRVVITGLGLVSPLASGVEETWKRLLAGESGARRVT-------EFEVD----- 50
Query: 92 FGQLTSKVAAVVPCGISS-GEFNEDSWLNSKDHRSIARFIAYALCAADEALHDAKWLPSD 150
L ++A +P G + G FN D ++ K+ R + FI YA+ AAD+AL DA W P +
Sbjct: 51 --DLACQIACRIPVGDGTNGTFNPDLHMDPKEQRKVDPFIVYAVGAADQALDDAGWHPEN 108
Query: 151 QGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYGFQ 210
+ RTGV IG GIG I V+A + +K RR+SPFFIP LIN+ASGHVS+K+ +
Sbjct: 109 DEDQVRTGVLIGSGIGGIEGIVEAGYTLRDKGPRRISPFFIPGRLINLASGHVSIKHKLR 168
Query: 211 GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYN 270
GPNH+ VTACATG H+IGDAAR+I FGD+DVMVAGGTES + +S+AGF +AL+T+ N
Sbjct: 169 GPNHSVVTACATGTHAIGDAARLIAFGDADVMVAGGTESPVSRISLAGFAACKALSTERN 228
Query: 271 GTPQEASRPFDCGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQP 330
P ASRP+D RDGFV+GEG+G++VLEELEHA RGAKIYAEV GYGMSGDA HIT P
Sbjct: 229 DDPTAASRPYDEDRDGFVMGEGAGIVVLEELEHALARGAKIYAEVIGYGMSGDAFHITAP 288
Query: 331 HIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLA 390
G+GA M ALK++G+ ++DY+NAH TST DT+E A+ V + A ++
Sbjct: 289 TESGEGAQRCMVAALKRAGIVPDEIDYINAHGTSTM-ADTIELGAVERVVGEAA--AKIS 345
Query: 391 FSSTKGAIGHLLGAAGAVEAIFAVLAIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPI 450
SSTK +IGHLLGAAGA EA+F+ LAI +AP TLNL P + +P ++ I
Sbjct: 346 MSSTKSSIGHLLGAAGAAEAVFSTLAIRDNIAPATLNLDNPAAQTRIDLVPHKP-RERKI 404
Query: 451 SAALSNSFGFGGTNASLLFTK 471
ALSNSFGFGGTNASL+ +
Sbjct: 405 DVALSNSFGFGGTNASLVLRR 425
|
| >4ddo_A 3-oxoacyl-[acyl-carrier-protein] synthase 2; ssgcid, struct genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia vietnamiensis} PDB: 4f32_A* Length = 451 | Back alignment and structure |
|---|
Score = 650 bits (1678), Expect = 0.0
Identities = 205/453 (45%), Positives = 278/453 (61%), Gaps = 21/453 (4%)
Query: 22 SSSSRAEVFDPPPLSPLRRVVVTGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMG 81
E P S RVVVTGIG+V+PLGCG E W+RLI G G+R +
Sbjct: 7 HHMGTLEAQTQGPGSMTLRVVVTGIGIVSPLGCGKELVWQRLIGGGSGLRRLG------- 59
Query: 82 NFDRETQLHAFGQLTSKVAAVVP--CGISSGEFNEDSWLNSKDHRSIARFIAYALCAADE 139
+ +L++KV V G F+ + + K+ R + RFI A+ AADE
Sbjct: 60 DDIAG-------ELSAKVGGTVQDVAEDPEGGFDPERSVPHKELRKMDRFIQMAMVAADE 112
Query: 140 ALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMA 199
AL +A W P + Q+ERT + GIG +A ++ + +RRLSPF IP L N+A
Sbjct: 113 ALAEAGWAPEAEQQRERTATVVASGIGGFPGLAEAVRIGETRGVRRLSPFTIPFFLSNLA 172
Query: 200 SGHVSMKYGFQGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGF 259
+G +S+K+ F+GP VTACA +IGDA RMI+ G++DV++AGG E++ D +S+ GF
Sbjct: 173 AGQISIKHRFRGPLGCPVTACAASVQAIGDAMRMIRTGEADVVLAGGAEAAFDKVSLGGF 232
Query: 260 CKSRALTTKYNGTPQEASRPFDCGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYG 319
+RAL+T ++ P ASRPFD RDGFV+GEG+ ++V+E L+HA RGA+ AE+ GYG
Sbjct: 233 AAARALSTGFSEEPVRASRPFDRDRDGFVMGEGAAMVVVESLDHALARGARPIAEIIGYG 292
Query: 320 MSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTV 379
+ DA+H+T DG GA+ AM AL+ + QVDYVNAHATSTP+GD E A++TV
Sbjct: 293 TTADAYHMTAGPDDGSGAMRAMKLALRMGDVAPEQVDYVNAHATSTPVGDAGEIEALKTV 352
Query: 380 FSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLAIHHGVAPLTLNLAKPDPIFND-N 438
F A A SSTK A GHLLGAAGA+EA F++LA+ GV P TLNL PDP + +
Sbjct: 353 FGVGA---GPAISSTKSATGHLLGAAGAIEAAFSILALRDGVLPGTLNLEHPDPAADGLD 409
Query: 439 FMPLTASKDMPISAALSNSFGFGGTNASLLFTK 471
+ A + +P+ ALSN FGFGG NAS+LF +
Sbjct: 410 LIGPAA-RHVPVEIALSNGFGFGGVNASVLFRR 441
|
| >2iwz_A 3-oxoacyl-[acyl-carrier-protein] synthase; mitochondria, mitochondrion, lipid synthesis, fatty acid SYN fatty acid biosynthesis; 1.65A {Homo sapiens} PDB: 2iwy_A 2c9h_A Length = 438 | Back alignment and structure |
|---|
Score = 648 bits (1673), Expect = 0.0
Identities = 215/436 (49%), Positives = 284/436 (65%), Gaps = 22/436 (5%)
Query: 39 RRVVVTGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSK 98
RRVV+TGIG+VTPLG G W RLI GE GI + + + +
Sbjct: 21 RRVVITGIGLVTPLGVGTHLVWDRLIGGESGIVSLV-------GEEYK-------SIPCS 66
Query: 99 VAAVVPCGISSGEFNEDSWLNSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERTG 158
VAA VP G G+FNE ++++ D +S++ A+ AA+ A+ D+ W P + + TG
Sbjct: 67 VAAYVPRGSDEGQFNEQNFVSKSDIKSMSSPTIMAIGAAELAMKDSGWHPQSEADQVATG 126
Query: 159 VSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYGFQGPNHAAVT 218
V+IG G+ + + A K ++SPFF+P+IL+NMA+G VS++Y +GPNHA T
Sbjct: 127 VAIGMGMIPLEVVSETALNFQTKGYNKVSPFFVPKILVNMAAGQVSIRYKLKGPNHAVST 186
Query: 219 ACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASR 278
AC TGAH++GD+ R I GD+DVMVAGGT+S I LS+AGF ++RAL+T N P+ A R
Sbjct: 187 ACTTGAHAVGDSFRFIAHGDADVMVAGGTDSCISPLSLAGFSRARALST--NSDPKLACR 244
Query: 279 PFDCGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAI 338
PF RDGFV+GEG+ VLVLEE EHA +R A+IYAEV GYG+SGDA HIT P +G+GA+
Sbjct: 245 PFHPKRDGFVMGEGAAVLVLEEYEHAVQRRARIYAEVLGYGLSGDAGHITAPDPEGEGAL 304
Query: 339 LAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKGAI 398
M ALK +G+Q ++ Y+NAHATSTPLGD E AI+ +F DHA +LA SSTKGA
Sbjct: 305 RCMAAALKDAGVQPEEISYINAHATSTPLGDAAENKAIKHLFKDHAY--ALAVSSTKGAT 362
Query: 399 GHLLGAAGAVEAIFAVLAIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPISA---ALS 455
GHLLGAAGAVEA F LA ++ P TLNL +P F+ N++PL A ++ L+
Sbjct: 363 GHLLGAAGAVEAAFTTLACYYQKLPPTLNLDCSEPEFDLNYVPLKA-QEWKTEKRFIGLT 421
Query: 456 NSFGFGGTNASLLFTK 471
NSFGFGGTNA+L
Sbjct: 422 NSFGFGGTNATLCIAG 437
|
| >2gp6_A 3-oxoacyl-[acyl-carrier-protein] synthase 2; thiolase fold, structural genomics, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} Length = 434 | Back alignment and structure |
|---|
Score = 611 bits (1577), Expect = 0.0
Identities = 144/436 (33%), Positives = 217/436 (49%), Gaps = 27/436 (6%)
Query: 36 SPLRRVVVTGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQL 95
VVVTGI M T L AETTW+ L+ + GIR + + FD L
Sbjct: 25 KAFPYVVVTGIAMTTALATDAETTWKLLLDRQSGIRTLDDPFV--EEFD----------L 72
Query: 96 TSKVAAVVPCGISSGEFNEDSWLNSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKE 155
++ + D L + R + + + +A D
Sbjct: 73 PVRIGGHLL-------EEFDHQLTRIELRRMGYLQRMSTVLSRRLWENAGSPEVD---TN 122
Query: 156 RTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYGFQGPNHA 215
R VSIG G+GS + V + + + ++ +SP + + + N A+ V ++ +
Sbjct: 123 RLMVSIGTGLGSAEELVFSYDDMRARGMKAVSPLTVQKYMPNGAAAAVGLERHAKAGVMT 182
Query: 216 AVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQE 275
V+ACA+GA +I A + I G++D + GG E+ I+A+ +AGF + R + + N P
Sbjct: 183 PVSACASGAEAIARAWQQIVLGEADAAICGGVETRIEAVPIAGFAQMRIVMSTNNDDPAG 242
Query: 276 ASRPFDCGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGK 335
A RPFD RDGFV GEG +L++E EHAK RGA I A + G ++ D H+ P +G+
Sbjct: 243 ACRPFDRDRDGFVFGEGGALLLIETEEHAKARGANILARIMGASITSDGFHMVAPDPNGE 302
Query: 336 GAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTK 395
A A+TRA++ +GL +D+VNAHAT T +GD E AI + A + K
Sbjct: 303 RAGHAITRAIQLAGLAPGDIDHVNAHATGTQVGDLAEGRAINNALGGNR----PAVYAPK 358
Query: 396 GAIGHLLGAAGAVEAIFAVLAIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPISAALS 455
A+GH +GA GAVE+I VLA+ V P TLNL DP + + + + A++
Sbjct: 359 SALGHSVGAVGAVESILTVLALRDQVIPPTLNLVNLDPEIDLDVVAGEP-RPGNYRYAIN 417
Query: 456 NSFGFGGTNASLLFTK 471
NSFGFGG N ++ F +
Sbjct: 418 NSFGFGGHNVAIAFGR 433
|
| >2wge_A 3-oxoacyl-[acyl-carrier-protein] synthase 1; beta ketoacyl synthase I thiolactomycin, cytoplasm, transferase, acyltransferase; HET: TLM; 1.80A {Mycobacterium tuberculosis} PDB: 2wgd_A* 2wgg_A* 2wgf_A* Length = 416 | Back alignment and structure |
|---|
Score = 607 bits (1568), Expect = 0.0
Identities = 148/436 (33%), Positives = 219/436 (50%), Gaps = 29/436 (6%)
Query: 36 SPLRRVVVTGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQL 95
VVVT + T + E+TW+ L+ GE GI + + L
Sbjct: 9 GGFPSVVVTAVTATTSISPDIESTWKGLLAGESGIHALE-------DEFVTKW-----DL 56
Query: 96 TSKVAAVVPCGISSGEFNEDSWLNSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKE 155
K+ + DS + D R ++ + A D +
Sbjct: 57 AVKIGGHLK-------DPVDSHMGRLDMRRMSYVQRMGKLLGGQLWESAGSPEVD---PD 106
Query: 156 RTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYGFQGPNHA 215
R V +G G+G V++ ++ R++SP + I+ N A+ + ++ G +
Sbjct: 107 RFAVVVGTGLGGAERIVESYDLMNAGGPRKVSPLAVQMIMPNGAAAVIGLQLGARAGVMT 166
Query: 216 AVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQE 275
V+AC++G+ +I A R I GD+DV V GG E I+AL +A F RA++T+ N P+
Sbjct: 167 PVSACSSGSEAIAHAWRQIVMGDADVAVCGGVEGPIEALPIAAFSMMRAMSTR-NDEPER 225
Query: 276 ASRPFDCGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGK 335
ASRPFD RDGFV GE ++++E EHAK RGAK A + G G++ DA H+ P DG
Sbjct: 226 ASRPFDKDRDGFVFGEAGALMLIETEEHAKARGAKPLARLLGAGITSDAFHMVAPAADGV 285
Query: 336 GAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTK 395
A AMTR+L+ +GL +D+VNAH T+TP+GD EA AIR D A A + K
Sbjct: 286 RAGRAMTRSLELAGLSPADIDHVNAHGTATPIGDAAEANAIRVAGCDQA-----AVYAPK 340
Query: 396 GAIGHLLGAAGAVEAIFAVLAIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPISAALS 455
A+GH +GA GA+E++ VL + GV P TLN PDP + + + + A++
Sbjct: 341 SALGHSIGAVGALESVLTVLTLRDGVIPPTLNYETPDPEIDLDVVAGEP-RYGDYRYAVN 399
Query: 456 NSFGFGGTNASLLFTK 471
NSFGFGG N +L F +
Sbjct: 400 NSFGFGGHNVALAFGR 415
|
| >3ho9_A 3-oxoacyl-[acyl-carrier-protein] synthase 2; FABF, platensimycin, platencin A1, KAS2, acyltransferase, fatty acid biosynthesis; HET: N3A; 1.90A {Escherichia coli} PDB: 3hnz_A* 3ho2_A* 3i8p_A* 3g11_A* 2gfx_A* 3g0y_A* 2gfv_A* 2gfw_A 2gfy_A* 1kas_A 1b3n_A Length = 427 | Back alignment and structure |
|---|
Score = 598 bits (1545), Expect = 0.0
Identities = 193/434 (44%), Positives = 277/434 (63%), Gaps = 24/434 (5%)
Query: 38 LRRVVVTGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTS 97
RRVVVTG+GM++P+G E+TW+ L+ G+ GI I +FD +
Sbjct: 17 KRRVVVTGLGMLSPVGNTVESTWKALLAGQSGISLID-------HFDTS-------AYAT 62
Query: 98 KVAAVVPCGISSGEFNEDSWLNSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERT 157
K A +V +FN + ++ K+ R + FI Y + A +A+ D+ +++ R
Sbjct: 63 KFAGLVK------DFNCEDIISRKEQRKMDAFIQYGIVAGVQAMQDSGLEITEE-NATRI 115
Query: 158 GVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYGFQGPNHAAV 217
G +IG GIG + + + R++SPFF+P ++NM +GH+++ YG +GP+ +
Sbjct: 116 GAAIGSGIGGLGLIEENHTSLMNGGPRKISPFFVPSTIVNMVAGHLTIMYGLRGPSISIA 175
Query: 218 TACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEAS 277
TA +G H+IG AAR+I +GD+DVMVAGG E + L + GF +RAL+T+ N PQ AS
Sbjct: 176 TAATSGVHNIGHAARIIAYGDADVMVAGGAEKASTPLGVGGFGAARALSTR-NDNPQAAS 234
Query: 278 RPFDCGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGA 337
RP+D RDGFV+G+G+G+LVLEE EHAKKRGAKIYAE+ G+GMS DA+H+T P +G GA
Sbjct: 235 RPWDKERDGFVLGDGAGMLVLEEYEHAKKRGAKIYAELVGFGMSSDAYHMTSPPENGAGA 294
Query: 338 ILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKGA 397
LAM AL+ +G+++ Q+ YVNAH TSTP GD EA A++T+F + A+ + SSTK
Sbjct: 295 ALAMANALRDAGIEASQIGYVNAHGTSTPAGDKAEAQAVKTIFGEAAS--RVLVSSTKSM 352
Query: 398 IGHLLGAAGAVEAIFAVLAIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPISAALSNS 457
GHLLGAAGAVE+I+++LA+ P T+NL PD + +F+P A + + L NS
Sbjct: 353 TGHLLGAAGAVESIYSILALRDQAVPPTINLDNPDEGCDLDFVPHEARQVSGMEYTLCNS 412
Query: 458 FGFGGTNASLLFTK 471
FGFGGTN SL+F K
Sbjct: 413 FGFGGTNGSLIFKK 426
|
| >1j3n_A 3-oxoacyl-(acyl-carrier protein) synthase II; condensing enzymes, fatty acid elongation, acyl-carrier protein (ACP); HET: CIT; 2.00A {Thermus thermophilus} SCOP: c.95.1.1 c.95.1.1 Length = 408 | Back alignment and structure |
|---|
Score = 596 bits (1540), Expect = 0.0
Identities = 215/434 (49%), Positives = 283/434 (65%), Gaps = 27/434 (6%)
Query: 38 LRRVVVTGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTS 97
+RRVVVTG+G +TP+G G E + + G+ G+R IT FD L
Sbjct: 1 MRRVVVTGLGALTPIGVGQEAFHKAQLAGKSGVRPIT-------RFDAS-------ALPV 46
Query: 98 KVAAVVPCGISSGEFNEDSWLNSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERT 157
++AA V + ++L+ K+ R + RF+ YAL AA AL DA P D ER
Sbjct: 47 RIAAEVD-------VDPGAYLDRKELRRLDRFVQYALIAAQLALEDAGLKPEDL-DPERV 98
Query: 158 GVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYGFQGPNHAAV 217
G +G GIG + +++ E+ R+SPFFIP ++ NMAS H++M+YGF GP+ V
Sbjct: 99 GTLVGTGIGGMETWEAQSRVFLERGPNRISPFFIPMMIANMASAHIAMRYGFTGPSSTVV 158
Query: 218 TACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEAS 277
TACATGA ++G A RMIQ G++D+++AGGTE++I +++ F RAL+T+ N P++AS
Sbjct: 159 TACATGADALGSALRMIQLGEADLVLAGGTEAAITPMAIGAFAVMRALSTR-NEEPEKAS 217
Query: 278 RPFDCGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGA 337
RPF RDGFV+GEG+GVLVLE EHAKKRGA+IYAE+ G+G S DAHHIT+PH +GKGA
Sbjct: 218 RPFTLSRDGFVMGEGAGVLVLEAYEHAKKRGARIYAELVGFGRSADAHHITEPHPEGKGA 277
Query: 338 ILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKGA 397
LAM RALK +G+ QV Y+NAH TSTP+GD E AI+ VF DHA L SSTK
Sbjct: 278 ALAMARALKDAGIAPEQVGYINAHGTSTPVGDRAEVLAIKRVFGDHAK--RLMVSSTKSM 335
Query: 398 IGHLLGAAGAVEAIFAVLAIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPISAALSNS 457
IGHLLGAAGAVEAI V A++HGV P T+NL PDP + +F+P ++ + ALSNS
Sbjct: 336 IGHLLGAAGAVEAIATVQALYHGVIPPTINLEDPDPELDLDFVP--EPREAKVDYALSNS 393
Query: 458 FGFGGTNASLLFTK 471
F FGG NA L F +
Sbjct: 394 FAFGGHNAVLAFKR 407
|
| >3o04_A LMO2201 protein, beta-keto-acyl carrier protein synthase II; csgid, structural genomics; 1.85A {Listeria monocytogenes} Length = 413 | Back alignment and structure |
|---|
Score = 595 bits (1537), Expect = 0.0
Identities = 188/434 (43%), Positives = 270/434 (62%), Gaps = 26/434 (5%)
Query: 38 LRRVVVTGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTS 97
RRVVVTGIG VTP+G AET+W G G+ ++T + +
Sbjct: 3 KRRVVVTGIGAVTPIGNDAETSWENAKKGVNGVAKMT-------RLNPD-------DFPV 48
Query: 98 KVAAVVPCGISSGEFNEDSWLNSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERT 157
K+AA + +F+ + +L K+ R + RF YA+ +A+ A+ D+ + D R
Sbjct: 49 KIAAELK------DFDVEKYLEKKEARKMDRFTHYAIASAEMAVQDSGLVIDDS-NANRV 101
Query: 158 GVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYGFQGPNHAAV 217
GV IG GIG + ++ + RR+SPFF+P ++ +M SG VS+++G +G N V
Sbjct: 102 GVWIGSGIGGMETFETQYEIFLNRGHRRVSPFFVPMMIPDMGSGQVSIRFGAKGINSTTV 161
Query: 218 TACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEAS 277
TACAT +SIGDA ++I+ GD+D M+ GG E+ I +S+AGF ++AL+ N P+ A
Sbjct: 162 TACATATNSIGDAFKVIERGDADAMITGGAEAPITKMSLAGFTANKALSL--NPDPETAC 219
Query: 278 RPFDCGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGA 337
RPFD RDGF+IGEG+G+++LEE EHAK RGAKIYAE+ GYG +GDA+HIT P +G+GA
Sbjct: 220 RPFDKDRDGFIIGEGAGIVILEEYEHAKARGAKIYAEIVGYGATGDAYHITAPAPNGEGA 279
Query: 338 ILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKGA 397
AM A+ +GL +VDY+NAH TSTP D E AI+TVF +HA LA SSTK
Sbjct: 280 ARAMKMAIDDAGLTPDKVDYINAHGTSTPYNDEYETQAIKTVFGEHAK--KLAISSTKSM 337
Query: 398 IGHLLGAAGAVEAIFAVLAIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPISAALSNS 457
GH LGA+G +EAIFA+L I + T++L D + + +++P A ++ ++ +SNS
Sbjct: 338 TGHTLGASGGIEAIFALLTIRDNIIAPTIHLKNQDEVCDLDYVPNEA-REANVNVVISNS 396
Query: 458 FGFGGTNASLLFTK 471
FGFGG NA+L+F +
Sbjct: 397 FGFGGHNATLVFKR 410
|
| >1ox0_A Beta ketoacyl-acyl carrier protein synthase; transferase; 1.30A {Streptococcus pneumoniae} SCOP: c.95.1.1 c.95.1.1 PDB: 1oxh_A 2alm_A 2rjt_A Length = 430 | Back alignment and structure |
|---|
Score = 595 bits (1536), Expect = 0.0
Identities = 184/454 (40%), Positives = 244/454 (53%), Gaps = 35/454 (7%)
Query: 24 SSRAEVFDPPPLSP------LRRVVVTGIGMVTPLGCGAETTWRRLIVGECGIREITPED 77
SS L P L RVVVTG G+ +P+G E W L G+ GI IT
Sbjct: 2 SSHHHHHHSSGLVPRGSHMKLNRVVVTGYGVTSPIGNTPEEFWNSLATGKIGIGGIT--- 58
Query: 78 LKMGNFDRETQLHAFGQLTSKVAAVVPCGISSGEFNEDSWLNSKDHRSIARFIAYALCAA 137
FD AA + +F D + KD + YAL AA
Sbjct: 59 ----KFDHS-------DFDVHNAAEIQ------DFPFDKYFVKKDTNRFDNYSLYALYAA 101
Query: 138 DEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILIN 197
EA++ A ++R GV + GIG I + D + EK +R+ P +P+ L N
Sbjct: 102 QEAVNHANLDVEAL-NRDRFGVIVASGIGGIKEIEDQVLRLHEKGPKRVKPMTLPKALPN 160
Query: 198 MASGHVSMKYGFQGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMA 257
MASG+V+M++G G + TAC++ +IGDA R I+FG DVM+ GGTE+SI ++A
Sbjct: 161 MASGNVAMRFGANGVCKSINTACSSSNDAIGDAFRSIKFGFQDVMLVGGTEASITPFAIA 220
Query: 258 GFCKSRALTTKYNGTPQEASRPFDCGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRG 317
GF AL+T P AS PFD R+GFV+GEGSG+LVLE LEHA+KRGA I AEV G
Sbjct: 221 GFQALTALST--TEDPTRASIPFDKDRNGFVMGEGSGMLVLESLEHAEKRGATILAEVVG 278
Query: 318 YGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIR 377
YG + DA+H+T PH +G+GAI A+ AL+++ + QV YVNAH TSTP + E+ AI
Sbjct: 279 YGNTCDAYHMTSPHPEGQGAIKAIKLALEEAEISPEQVAYVNAHGTSTPANEKGESGAIV 338
Query: 378 TVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLAIHHGVAPLTLNLAKPDPIFND 437
V + SSTK GHLLGAAGAVEAI + A+ H P+T ++
Sbjct: 339 AVLGKE-----VPVSSTKSFTGHLLGAAGAVEAIVTIEAMRHNFVPMTAGTSEVSDYIEA 393
Query: 438 NFMPLTASKDMPISAALSNSFGFGGTNASLLFTK 471
N + + I A+SN+FGFGG NA L F +
Sbjct: 394 NVVYGQG-LEKEIPYAISNTFGFGGHNAVLAFKR 426
|
| >1e5m_A KAS II, beta ketoacyl acyl carrier protein synthase II; condensing enzyme, biosynthetic role, carbon-carbon bond formation; 1.54A {Synechocystis SP} SCOP: c.95.1.1 c.95.1.1 Length = 416 | Back alignment and structure |
|---|
Score = 594 bits (1534), Expect = 0.0
Identities = 188/434 (43%), Positives = 263/434 (60%), Gaps = 25/434 (5%)
Query: 38 LRRVVVTGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTS 97
+RVVVTG+G +TP+G + W+ L+ G GI IT FD
Sbjct: 6 KKRVVVTGLGAITPIGNTLQDYWQGLMEGRNGIGPIT-------RFDAS-------DQAC 51
Query: 98 KVAAVVPCGISSGEFNEDSWLNSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERT 157
+ V +F+ +L+ K+ + + RF +A+CA+ +A++DAK + ++ +
Sbjct: 52 RFGGEVK------DFDATQFLDRKEAKRMDRFCHFAVCASQQAINDAKLVINEL-NADEI 104
Query: 158 GVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYGFQGPNHAAV 217
GV IG GIG + D ++ +K R SPF IP ++ NMASG ++ G +GPN+ V
Sbjct: 105 GVLIGTGIGGLKVLEDQQTILLDKGPSRCSPFMIPMMIANMASGLTAINLGAKGPNNCTV 164
Query: 218 TACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEAS 277
TACA G+++IGDA R++Q G + M+ GGTE++I LS AGF +RAL+ + N P AS
Sbjct: 165 TACAAGSNAIGDAFRLVQNGYAKAMICGGTEAAITPLSYAGFASARALSFR-NDDPLHAS 223
Query: 278 RPFDCGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGA 337
RPFD RDGFV+GEGSG+L+LEELE A RGAKIY E+ GY M+ DA+HIT P DG+GA
Sbjct: 224 RPFDKDRDGFVMGEGSGILILEELESALARGAKIYGEMVGYAMTCDAYHITAPVPDGRGA 283
Query: 338 ILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKGA 397
A+ ALK SGL+ V Y+NAH TSTP D E AI+ +HA ++A SSTK
Sbjct: 284 TRAIAWALKDSGLKPEMVSYINAHGTSTPANDVTETRAIKQALGNHAY--NIAVSSTKSM 341
Query: 398 IGHLLGAAGAVEAIFAVLAIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPISAALSNS 457
GHLLG +G +EA+ V+AI P T+NL PDP + +++P + + + + ALSNS
Sbjct: 342 TGHLLGGSGGIEAVATVMAIAEDKVPPTINLENPDPECDLDYVPGQS-RALIVDVALSNS 400
Query: 458 FGFGGTNASLLFTK 471
FGFGG N +L F K
Sbjct: 401 FGFGGHNVTLAFKK 414
|
| >4ewg_A Beta-ketoacyl synthase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, transferase; 2.25A {Burkholderia phymatum} Length = 412 | Back alignment and structure |
|---|
Score = 593 bits (1532), Expect = 0.0
Identities = 141/437 (32%), Positives = 218/437 (49%), Gaps = 30/437 (6%)
Query: 38 LRRVVVTGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTS 97
++RVV+TG+G VT LG + L G +R + ++D F L +
Sbjct: 5 MKRVVITGMGGVTALGSRWDEIEAALKAGRNAVRRMP-------DWD------YFESLHT 51
Query: 98 KVAAVVPCGISSGEFNEDSWLNSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERT 157
++AA +P F + + K RS+ R YA+ A++ AL DA + + R
Sbjct: 52 RLAAPLP------GFAQPADWPRKKTRSMGRVSMYAVRASELALADAGFAGDESISDGRM 105
Query: 158 GVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYGFQGPNHAAV 217
GV+ G GS+ M+ + ++ +++ + + +VS+ + +G
Sbjct: 106 GVAYGSSSGSVEPIRAFGTMLESGSMTDVTSNSYVQMMPHTTAVNVSLFWDLKGRIVPTS 165
Query: 218 TACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEAS 277
+ACA+G+ +IG A I G +M+AGG E ++A F A +T+ N P
Sbjct: 166 SACASGSQAIGYAYENIAMGKQTLMLAGGAEELS-GPAVAVFDTLYATSTR-NDEPHLTP 223
Query: 278 RPFDCGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGA 337
RPFD RDG V+GEG+ LVLEE EHAK RGA I+AE+ G+G + D H+TQP
Sbjct: 224 RPFDAKRDGLVVGEGAATLVLEEYEHAKARGATIHAEIVGFGCNSDGAHMTQP--TASTM 281
Query: 338 ILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKGA 397
AM AL+ + L ++ + YVNAH TST GD E+ A F + + SS K
Sbjct: 282 ARAMQLALEDAKLDANAIAYVNAHGTSTDRGDVAESQATARTFGER-----MPISSLKSY 336
Query: 398 IGHLLGAAGAVEAIFAVLAIHHGVAPLTLNLAKPDPIFND-NFMPLTASKDMPISAALSN 456
+GH LGA GA+EA + + + TLNL + DP +++ A + + +SN
Sbjct: 337 VGHTLGACGALEAWWTIEMMKRNWYAPTLNLTEVDPACAPLDYIRGEA-RAIDAEYVMSN 395
Query: 457 SFGFGGTNASLLFTKCQ 473
+F FGG N SL+F + +
Sbjct: 396 NFAFGGINTSLIFRRVR 412
|
| >2gqd_A 3-oxoacyl-[acyl-carrier-protein] synthase 2; duplicated babababb fold, transferase; 2.30A {Staphylococcus aureus} Length = 437 | Back alignment and structure |
|---|
Score = 594 bits (1533), Expect = 0.0
Identities = 188/434 (43%), Positives = 267/434 (61%), Gaps = 26/434 (5%)
Query: 38 LRRVVVTGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTS 97
+RVV+TG+G ++P+G +TTW + G GI +IT D E +
Sbjct: 27 NKRVVITGMGALSPIGNDVKTTWENALKGVNGIDKIT-------RIDTE-------PYSV 72
Query: 98 KVAAVVPCGISSGEFNEDSWLNSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERT 157
+A + FN + ++ K+ R + RF YA+ AA EA+ DA+ ++ +R
Sbjct: 73 HLAGELK------NFNIEDHIDKKEARRMDRFTQYAIVAAREAVKDAQLDINEN-TADRI 125
Query: 158 GVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYGFQGPNHAAV 217
GV IG GIG + A + + +K RR+SPFF+P ++ +MA+G VS+ G +GPN A V
Sbjct: 126 GVWIGSGIGGMETFEIAHKQLMDKGPRRVSPFFVPMLIPDMATGQVSIDLGAKGPNGATV 185
Query: 218 TACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEAS 277
TACATG +SIG+A +++Q GD+D M+ GGTE+ I +++AGF SRAL+T N + A
Sbjct: 186 TACATGTNSIGEAFKIVQRGDADAMITGGTEAPITHMAIAGFSASRALST--NDDIETAC 243
Query: 278 RPFDCGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGA 337
RPF GRDGFV+GEG+G+LV+E LE A+ RGA IYAE+ GYG +GDA+HIT P +G+G
Sbjct: 244 RPFQEGRDGFVMGEGAGILVIESLESAQARGANIYAEIVGYGTTGDAYHITAPAPEGEGG 303
Query: 338 ILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKGA 397
AM A+ +G++ V Y+NAH TSTP+GD E AI+ F + A L SSTK
Sbjct: 304 SRAMQAAMDDAGIEPKDVQYLNAHGTSTPVGDLNEVKAIKNTFGEAAK--HLKVSSTKSM 361
Query: 398 IGHLLGAAGAVEAIFAVLAIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPISAALSNS 457
GHLLGA G +EAIF+ L+I T++ PDP + + +P A +D+ I+ A+SNS
Sbjct: 362 TGHLLGATGGIEAIFSALSIKDSKVAPTIHAVTPDPECDLDIVPNEA-QDLDITYAMSNS 420
Query: 458 FGFGGTNASLLFTK 471
GFGG NA L+F K
Sbjct: 421 LGFGGHNAVLVFKK 434
|
| >2vba_A 3-oxoacyl-[acyl-carrier-protein] synthase 1; cytoplasm, antibiotic, transferase, amino-thiazole, acyltransferase, lipid synthesis; HET: P4T; 1.36A {Escherichia coli} SCOP: c.95.1.1 c.95.1.1 PDB: 1fj4_A* 1g5x_A 2aq7_A* 1fj8_A* 2aqb_A 2bui_A 2buh_A 2vb7_A* 2vb8_A 2vb9_A* 1h4f_A 1dd8_A 2cdh_A 2bz4_A 2byz_A 2bz3_A* 2byy_A* 1f91_A* 2cf2_A 2byw_A ... Length = 406 | Back alignment and structure |
|---|
Score = 581 bits (1500), Expect = 0.0
Identities = 148/435 (34%), Positives = 219/435 (50%), Gaps = 33/435 (7%)
Query: 38 LRRVVVTGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTS 97
++R V+TG+G+V+ +G + L G GI + S
Sbjct: 1 MKRAVITGLGIVSSIGNNQQEVLASLREGRSGITFSQ-------ELKDS-------GMRS 46
Query: 98 KVAAVVPCGISSGEFNEDSWLNSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERT 157
V V + ++ K R ++ YA + ++A+ DA P R
Sbjct: 47 HVWGNVK-------LDTTGLIDRKVVRFMSDASIYAFLSMEQAIADAGLSPEAYQNNPRV 99
Query: 158 GVSIGGGIGSISDTVDAAQ-MICEKRLRRLSPFFIPRILINMASGHVSMKYGFQGPNHAA 216
G+ G G GS V A M + L+ + P+ + + + + S ++ + G N++
Sbjct: 100 GLIAGSGGGSPRFQVFGADAMRGPRGLKAVGPYVVTKAMASGVSACLATPFKIHGVNYSI 159
Query: 217 VTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEA 276
+ACAT AH IG+A IQ G D++ AGG E ++ F AL+TKYN TP++A
Sbjct: 160 SSACATSAHCIGNAVEQIQLGKQDIVFAGGGEELCWEMAC-EFDAMGALSTKYNDTPEKA 218
Query: 277 SRPFDCGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKG 336
SR +D RDGFVI G G++V+EELEHA RGA IYAE+ GYG + D + P G+G
Sbjct: 219 SRTYDAHRDGFVIAGGGGMVVVEELEHALARGAHIYAEIVGYGATSDGADMVAP--SGEG 276
Query: 337 AILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKG 396
A+ M A+ +DY+N+H TSTP+GD E AIR VF D + A S+TK
Sbjct: 277 AVRCMKMAMHGVDT---PIDYLNSHGTSTPVGDVKELAAIREVFGDKS----PAISATKA 329
Query: 397 AIGHLLGAAGAVEAIFAVLAIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPISAALSN 456
GH LGAAG EAI+++L + HG ++N+ + D + D ++ +SN
Sbjct: 330 MTGHSLGAAGVQEAIYSLLMLEHGFIAPSINIEELDEQAAGLNIVTET-TDRELTTVMSN 388
Query: 457 SFGFGGTNASLLFTK 471
SFGFGGTNA+L+ K
Sbjct: 389 SFGFGGTNATLVMRK 403
|
| >3mqd_A Beta-ketoacyl synthase; ssgcid, ALS collaborative crystallography, beta-ketoacyl SYN brucella melitensis, fragments of LIFE; HET: 3MQ; 1.25A {Brucella melitensis biovar abortus} PDB: 3lrf_A* 3u0e_A* 3u0f_A* Length = 428 | Back alignment and structure |
|---|
Score = 576 bits (1487), Expect = 0.0
Identities = 156/435 (35%), Positives = 228/435 (52%), Gaps = 32/435 (7%)
Query: 38 LRRVVVTGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTS 97
+RRVVVTG+G+V+ +G E L + GI +
Sbjct: 22 MRRVVVTGMGIVSSIGSNTEEVTASLREAKSGISRAE-------EYAEL-------GFRC 67
Query: 98 KVAAVVPCGISSGEFNEDSWLNSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERT 157
+V + + +S ++ + R R A+ A D+A+ DA + ERT
Sbjct: 68 QVHGAP-------DIDIESLVDRRAMRFHGRGTAWNHIAMDQAIADAGLTEEEV-SNERT 119
Query: 158 GVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYGFQGPNHAAV 217
G+ +G G S VD+A + EK +R+ PF +P+ + + AS ++ + +G N++
Sbjct: 120 GIIMGSGGPSTRTIVDSADITREKGPKRVGPFAVPKAMSSTASATLATFFKIKGINYSIS 179
Query: 218 TACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEAS 277
+ACAT H IG+A MIQ+G D M AGG E LS+ F A+++KYN TP AS
Sbjct: 180 SACATSNHCIGNAYEMIQYGKQDRMFAGGCEDLDWTLSV-LFDAMGAMSSKYNDTPSTAS 238
Query: 278 RPFDCGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGA 337
R +D RDGFVI G+GVLVLE+LE A RGAKIY E+ GYG + D + + P G+GA
Sbjct: 239 RAYDKNRDGFVIAGGAGVLVLEDLETALARGAKIYGEIVGYGATSDGYDMVAP--SGEGA 296
Query: 338 ILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKGA 397
I M AL ++DY+N HATSTP GD E AIR +F ++TK
Sbjct: 297 IRCMKMALSTVT---SKIDYINPHATSTPAGDAPEIEAIRQIFGAGDV--CPPIAATKSL 351
Query: 398 IGHLLGAAGAVEAIFAVLAIHHGVAPLTLNLAKPDPIFND-NFMPLTASKDMPISAALSN 456
GH LGA G EAI+++L + + + ++ + DP F D + ++ ++ LSN
Sbjct: 352 TGHSLGATGVQEAIYSLLMMQNNFICESAHIEELDPAFADMPIVRKRI-DNVQLNTVLSN 410
Query: 457 SFGFGGTNASLLFTK 471
SFGFGGTNA+L+F +
Sbjct: 411 SFGFGGTNATLVFQR 425
|
| >1tqy_A Beta-ketoacyl synthase/acyl transferase; alpha-beta-alpha-beta-alpha, heterodimer, transferase; 2.00A {Streptomyces coelicolor} SCOP: c.95.1.1 c.95.1.1 Length = 424 | Back alignment and structure |
|---|
Score = 571 bits (1474), Expect = 0.0
Identities = 135/439 (30%), Positives = 207/439 (47%), Gaps = 31/439 (7%)
Query: 39 RRVVVTGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSK 98
RRVV+TG+G+ P G G W L G R I+ FD S+
Sbjct: 3 RRVVITGVGVRAPGGNGTRQFWELLTSGRTATRRIS-------FFDPS-------PYRSQ 48
Query: 99 VAAVVPCGISSGEFNEDSWLNSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERTG 158
VAA ++ + R +A+ A EA + L D R G
Sbjct: 49 VAAEAD------FDPVAEGFGPRELDRMDRASQFAVACAREAFAASG-LDPDTLDPARVG 101
Query: 159 VSIGGGIGSISDTVDAAQMICEK------RLRRLSPFFIPRILINMASGHVSMKYGFQGP 212
VS+G + + + ++ + LS ++ ++ V+ G +GP
Sbjct: 102 VSLGSAVAAATSLEREYLLLSDSGRDWEVDAAWLSRHMFDYLVPSVMPAEVAWAVGAEGP 161
Query: 213 NHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGT 272
T C +G S+G+A R I+ G +DVM AG ++ I + +A F RA T + N
Sbjct: 162 VTMVSTGCTSGLDSVGNAVRAIEEGSADVMFAGAADTPITPIVVACFDAIRATTAR-NDD 220
Query: 273 PQEASRPFDCGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHI 332
P+ ASRPFD RDGFV+ EG+ + VLE+ + A RGA+I+AE+ GY +A+H+T
Sbjct: 221 PEHASRPFDGTRDGFVLAEGAAMFVLEDYDSALARGARIHAEISGYATRCNAYHMTGLKA 280
Query: 333 DGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFS 392
DG+ + AL +S + +DY+NAH + T D E A + +HA S
Sbjct: 281 DGREMAETIRVALDESRTDATDIDYINAHGSGTRQNDRHETAAYKRALGEHAR--RTPVS 338
Query: 393 STKGAIGHLLGAAGAVEAIFAVLAIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPISA 452
S K +GH LGA G++E VLA+ HGV P T NL DP + +++PL A ++ + +
Sbjct: 339 SIKSMVGHSLGAIGSLEIAACVLALEHGVVPPTANLRTSDPECDLDYVPLEA-RERKLRS 397
Query: 453 ALSNSFGFGGTNASLLFTK 471
L+ GFGG ++++
Sbjct: 398 VLTVGSGFGGFQSAMVLRD 416
|
| >1tqy_B Actinorhodin polyketide putative beta-ketoacyl SY; alpha-beta-alpha-beta-alpha, heterodimer, transferase; 2.00A {Streptomyces coelicolor} SCOP: c.95.1.1 c.95.1.1 Length = 415 | Back alignment and structure |
|---|
Score = 563 bits (1454), Expect = 0.0
Identities = 104/434 (23%), Positives = 175/434 (40%), Gaps = 33/434 (7%)
Query: 39 RRVVVTGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSK 98
+ V++TG+G+V P G G W ++ G G+ +T FD + +
Sbjct: 9 KSVLITGVGVVAPNGLGLAPYWSAVLDGRHGLGPVT-------RFDVS-------RYPAT 54
Query: 99 VAAVVPCGISSGEFNEDSWLNSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERTG 158
+A + +F+ + + AL AAD AL DAK P G
Sbjct: 55 LAGQID------DFHAPDHIPGRLLPQTDPSTRLALTAADWALQDAKADPESL-TDYDMG 107
Query: 159 VSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYGFQGPNHAAVT 218
V G T + + + + +S + + +G +S+++G +GP+ A V
Sbjct: 108 VVTANACGGFDFTHREFRKLWSEGPKSVSVYESFAWFYAVNTGQISIRHGMRGPSSALVA 167
Query: 219 ACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASR 278
A G ++G A R I+ G + ++V+GG +S++D S ++T P A
Sbjct: 168 EQAGGLDALGHARRTIRRG-TPLVVSGGVDSALDPWGWVSQIASGRIST--ATDPDRAYL 224
Query: 279 PFDCGRDGFVIGEGSGVLVLEELEHAKKRGA-KIYAEVRGYGMSGDAHHITQPHIDGKGA 337
PFD G+V GEG +LVLE+ A+ RG Y E+ G + D + G
Sbjct: 225 PFDERAAGYVPGEGGAILVLEDSAAAEARGRHDAYGELAGCASTFDPAPGSGR---PAGL 281
Query: 338 ILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKGA 397
A+ AL +G VD V A P D EA AI VF + + K
Sbjct: 282 ERAIRLALNDAGTGPEDVDVVFADGAGVPELDAAEARAIGRVFGREG----VPVTVPKTT 337
Query: 398 IGHLLGAAGAVEAIFAVLAIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPISAALSNS 457
G L G ++ + A++++ GV T + + + + + AL +
Sbjct: 338 TGRLYSGGGPLDVVTALMSLREGVIAPTAGVTSVPREYGIDLVLGEP-RSTAPRTALVLA 396
Query: 458 FGFGGTNASLLFTK 471
G G N++ + +
Sbjct: 397 RGRWGFNSAAVLRR 410
|
| >2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 1688 | Back alignment and structure |
|---|
Score = 418 bits (1075), Expect = e-132
Identities = 80/493 (16%), Positives = 142/493 (28%), Gaps = 80/493 (16%)
Query: 16 DLSRYFSSSSRAEVFDPPPLSPLRRVVVTGIGMVTPLGCGAETTWRRLIVGECGIREITP 75
DL +S+ G + ET + G P
Sbjct: 931 DLE--PFEASKET----------AEQFKHQHGDKVDIFEIPET-GEYSVKLLKGATLYIP 977
Query: 76 EDLKMGNFDRETQLHAFGQLTSKVAAVVPCGISSGEFNEDSWLNS-KDHRSIARFIAYAL 134
+ L+ FDR VA +P G +N ++ S + + L
Sbjct: 978 KALR---FDR------------LVAGQIPTG-----WNAKTYGISDDIISQVDPITLFVL 1017
Query: 135 CAADEALHDAKWLPS----DQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFF 190
+ EA + G G G+G +S + + +
Sbjct: 1018 VSVVEAFIASGITDPYEMYKYVHVSEVGNCSGSGMGGVSALRGMFKDRFKDE-PVQNDIL 1076
Query: 191 IPRILINMASGHVSMKYGFQGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESS 250
+ M++ + GP V ACAT S+ I G + + + GG +
Sbjct: 1077 QESFINTMSAWVNMLLISSSGPIKTPVGACATSVESVDIGVETILSGKARICIVGGYDDF 1136
Query: 251 IDALSMAGFCKSRALTT-----KYNGTPQEASRPFDCGRDGFVIGEGSGVLVLEELEHAK 305
+ F +A + ++ TP E SRP R+GF+ +G+G+ ++ + + A
Sbjct: 1137 QE-EGSFEFGNMKATSNTLEEFEHGRTPAEMSRPATTTRNGFMEAQGAGIQIIMQADLAL 1195
Query: 306 KRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQS------------- 352
K G IY V + D + P GKG + S
Sbjct: 1196 KMGVPIYGIVAMAATATDKIGRSVPA-PGKGILTTAREHHSSVKYASPNLNMKYRKRQLV 1254
Query: 353 -----------HQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKGAIGHL 401
++++ + A P D E RT + + + G+
Sbjct: 1255 TREAQIKDWVENELEALKLEAEEIPSEDQNEFLLERTREIHNEAESQ--LRAAQQQWGND 1312
Query: 402 LGAAGAVEAIFAVLAIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPISAALSNSFG-F 460
A +G+ D T + D SA ++
Sbjct: 1313 FYKRDPRIAPLRGALATYGLTI-------DDLGVASFHGTSTKANDKNESATINEMMKHL 1365
Query: 461 GGTNASLLFTKCQ 473
G + + + Q
Sbjct: 1366 GRSEGNPVIGVFQ 1378
|
| >2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 1688 | Back alignment and structure |
|---|
Score = 210 bits (536), Expect = 2e-59
Identities = 49/262 (18%), Positives = 75/262 (28%), Gaps = 11/262 (4%)
Query: 215 AAVTACATGAHSIGDAARMIQ--FGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGT 272
+ A + D G + A SS+ S K R
Sbjct: 1199 VPIYGIVAMAATATDKIGRSVPAPGKGILTTAREHHSSVKYASPNLNMKYRKRQLVTREA 1258
Query: 273 PQEASRPFDCGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHI 332
+ + + E + ++ E +R +I+ E +
Sbjct: 1259 QIKDWVENELE---ALKLEAEEIPSEDQNEFLLERTREIHNEAESQLRAA-QQQWGNDFY 1314
Query: 333 DGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATS--GSLA 390
I + AL GL + + H TST D E+ I + S +
Sbjct: 1315 KRDPRIAPLRGALATYGLTIDDLGVASFHGTSTKANDKNESATINEMMKHLGRSEGNPVI 1374
Query: 391 FSSTKGAIGHLLGAAGAVEAIFAVLAIHHGVAPLTLNLAKPDP---IFNDNFMPLTASKD 447
K GH GAAGA A+ ++ G+ P N D F P K
Sbjct: 1375 GVFQKFLTGHPKGAAGAWMMNGALQILNSGIIPGNRNADNVDKILEQFEYVLYPSKTLKT 1434
Query: 448 MPISAALSNSFGFGGTNASLLF 469
+ A SFGFG +
Sbjct: 1435 DGVRAVSITSFGFGQKGGQAIV 1456
|
| >2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; 3.1A {Thermomyces lanuginosus} PDB: 2uvb_A* Length = 1878 | Back alignment and structure |
|---|
Score = 339 bits (870), Expect = e-104
Identities = 70/375 (18%), Positives = 115/375 (30%), Gaps = 45/375 (12%)
Query: 57 ETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSKVAAVVPCGISSGEFNEDS 116
T + + G + Q VA +P G ++
Sbjct: 1133 PETGQYTVRLRKGAT-LLIPK--------------ALQFDRLVAGQIPTG-----WDARR 1172
Query: 117 WLNSKDH-RSIARFIAYALCAADEALHDAKWLPSDQGQK----ERTGVSIGGGIGSISDT 171
+ +D + + Y L + EAL + + K G IG G+G S
Sbjct: 1173 YGVPEDIIQQVDPVTLYVLVSVAEALLSSGITDPYEFYKYVHLSEVGNCIGSGVGGTSAL 1232
Query: 172 VDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYGFQGPNHAAVTACATGAHSIGDAA 231
+ + + MA+ + GP V ACAT S+
Sbjct: 1233 RGMYKDRYLDK-PVQKDILQESFVNTMAAWVNMLLLSSTGPIKTPVGACATAVESLDVGY 1291
Query: 232 RMIQFGDSDVMVAGG-----TESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDG 286
I G + V + GG E S + +M ++ + P E SRP R+G
Sbjct: 1292 DTIMQGKARVCLVGGFDDFQEEGSYEFANMGATSNAKEEFAR-GREPGEMSRPTSTTRNG 1350
Query: 287 FVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALK 346
F+ +G GV V+ + A + G IY V + D + P G+G +
Sbjct: 1351 FMESQGCGVQVIMTAQLALEMGVPIYGIVAMTSTATDKIGRSVPA-PGQGVLTTAREKSG 1409
Query: 347 QSGLQSHQVDY-----------VNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTK 395
+ Y + S L E AI++ S+ + +
Sbjct: 1410 NFPSPLLDIKYRRRQLELRRQQIKQWKESEYLYLQEEVAAIKSQRSEEDGPFDET-AYLR 1468
Query: 396 GAIGHLLGAAGAVEA 410
H+ A EA
Sbjct: 1469 ERTEHIEREARRQEA 1483
|
| >2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; 3.1A {Thermomyces lanuginosus} PDB: 2uvb_A* Length = 1878 | Back alignment and structure |
|---|
Score = 162 bits (410), Expect = 6e-43
Identities = 40/182 (21%), Positives = 59/182 (32%), Gaps = 6/182 (3%)
Query: 292 GSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQ 351
+E + ++R I E R + I + AL GL
Sbjct: 1455 SEEDGPFDETAYLRERTEHIEREARRQEAEAQTSFGNEFWRRD-SRIAPLRGALATWGLT 1513
Query: 352 SHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSG--SLAFSSTKGAIGHLLGAAGAVE 409
+ + H TST D E+ I + ++ K GH GAAGA
Sbjct: 1514 IDDLGVASFHGTSTVANDKNESDVICQQLKHLGRTKGNAVLGIFQKYLTGHPKGAAGAWM 1573
Query: 410 AIFAVLAIHHGVAPLTLNLAKPDP---IFNDNFMPLTASKDMPISAALSNSFGFGGTNAS 466
+ ++ G+ P N D F+ P + K I A SFGFG A
Sbjct: 1574 LNGCLQVLNTGIVPGNRNADNVDKVMEQFDYIVYPSRSIKTDGIKAFSVTSFGFGQKGAQ 1633
Query: 467 LL 468
+
Sbjct: 1634 AI 1635
|
| >2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_A* 3hmj_A* Length = 1887 | Back alignment and structure |
|---|
Score = 310 bits (796), Expect = 5e-94
Identities = 74/452 (16%), Positives = 134/452 (29%), Gaps = 67/452 (14%)
Query: 57 ETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSKVAAVVPCGISSGEFNEDS 116
T + G P+ L+ VA +P G +N +
Sbjct: 1158 PETGEYSVKLLKGATLYIPKALR---------------FDRLVAGQIPTG-----WNAKT 1197
Query: 117 WLNS-KDHRSIARFIAYALCAADEALHDAKWLPS----DQGQKERTGVSIGGGIGSISDT 171
+ S + + L + EA + G G G+G +S
Sbjct: 1198 YGISDDIISQVDPITLFVLVSVVEAFIASGITDPYEMYKYVHVSEVGNCSGSGMGGVSAL 1257
Query: 172 VDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYGFQGPNHAAVTACATGAHSIGDAA 231
+ + + + M++ + GP V ACAT S+
Sbjct: 1258 RGMFKDRFKDE-PVQNDILQESFINTMSAWVNMLLISSSGPIKTPVGACATSVESVDIGV 1316
Query: 232 RMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTT-----KYNGTPQEASRPFDCGRDG 286
I G + + + GG + + F +A + ++ TP E SRP R+G
Sbjct: 1317 ETILSGKARICIVGGYDDFQE-EGSFEFGNMKATSNTLEEFEHGRTPAEMSRPATTTRNG 1375
Query: 287 FVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALK 346
F+ +G+G+ ++ + + A K G IY V + D + P GKG +
Sbjct: 1376 FMEAQGAGIQIIMQADLALKMGVPIYGIVAMAATATDKIGRSVPA-PGKGILTTAREHHS 1434
Query: 347 QSGLQS------------------------HQVDYVNAHATSTPLGDTVEATAIRTVFSD 382
S ++++ + A P D E RT
Sbjct: 1435 SVKYASPNLNMKYRKRQLVTREAQIKDWVENELEALKLEAEEIPSEDQNEFLLERTREIH 1494
Query: 383 HATSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLAIHHGVAPLTLNLAKPDPIFNDNFMPL 442
+ + S ++ + + + LA T L D
Sbjct: 1495 NE-AESQLRAAQQQWGNDFYKRDPRIAPLRGALA--------TYGLTIDDLGVASFHGTS 1545
Query: 443 TASKDMPISAALSNSFG-FGGTNASLLFTKCQ 473
T + D SA ++ G + + + Q
Sbjct: 1546 TKANDKNESATINEMMKHLGRSEGNPVIGVFQ 1577
|
| >2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_A* 3hmj_A* Length = 1887 | Back alignment and structure |
|---|
Score = 164 bits (417), Expect = 7e-44
Identities = 49/262 (18%), Positives = 75/262 (28%), Gaps = 11/262 (4%)
Query: 215 AAVTACATGAHSIGDAARMIQ--FGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGT 272
+ A + D G + A SS+ S K R
Sbjct: 1398 VPIYGIVAMAATATDKIGRSVPAPGKGILTTAREHHSSVKYASPNLNMKYRKRQLVTREA 1457
Query: 273 PQEASRPFDCGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHI 332
+ + + E + ++ E +R +I+ E +
Sbjct: 1458 QIKDWVENELE---ALKLEAEEIPSEDQNEFLLERTREIHNEAESQLRA-AQQQWGNDFY 1513
Query: 333 DGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATS--GSLA 390
I + AL GL + + H TST D E+ I + S +
Sbjct: 1514 KRDPRIAPLRGALATYGLTIDDLGVASFHGTSTKANDKNESATINEMMKHLGRSEGNPVI 1573
Query: 391 FSSTKGAIGHLLGAAGAVEAIFAVLAIHHGVAPLTLNLAKPDP---IFNDNFMPLTASKD 447
K GH GAAGA A+ ++ G+ P N D F P K
Sbjct: 1574 GVFQKFLTGHPKGAAGAWMMNGALQILNSGIIPGNRNADNVDKILEQFEYVLYPSKTLKT 1633
Query: 448 MPISAALSNSFGFGGTNASLLF 469
+ A SFGFG +
Sbjct: 1634 DGVRAVSITSFGFGQKGGQAIV 1655
|
| >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* Length = 2512 | Back alignment and structure |
|---|
Score = 150 bits (381), Expect = 4e-39
Identities = 66/276 (23%), Positives = 109/276 (39%), Gaps = 22/276 (7%)
Query: 198 MASGHVSMKYGFQGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMA 257
M + +S + F+GP+ TAC++ ++ A + I+ G+ V GG + S
Sbjct: 139 MMANRLSFFFDFKGPSITIDTACSSSLLALQSAYQAIRGGECSAAVVGGLNVLLKPNSSL 198
Query: 258 GFCKSRALTTKYNGTPQEASRPFDCGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRG 317
F K L+ R FD G+ E ++L + A++ +YA +
Sbjct: 199 QFMKLGMLS------QDGTCRSFDAEGTGYCRAEAVVAVLLTKKSLARR----VYATILN 248
Query: 318 YGMSGDAHH---ITQPHIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEAT 374
G + D +T P G + +G ++Y+ AH T T +GD E
Sbjct: 249 AGTNTDGSKEQGVTFP--SGDVQEQLIRSLYAPAGPDPESLEYIEAHGTGTKVGDPQELN 306
Query: 375 AIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLAIHHGVAPLTLNLAKPDP- 433
I L STK +GH A+G I +L++ HGV L+ P+P
Sbjct: 307 GIVNALCATRREP-LLIGSTKSNMGHPEPASGVAALIKVLLSLEHGVWAPNLHYHTPNPE 365
Query: 434 --IFNDNFMPL--TASKDMPISAALSNSFGFGGTNA 465
D + + + ++ SFGFGG+N
Sbjct: 366 IPALQDGRLQVVDRPLPIRGGNVGIN-SFGFGGSNV 400
|
| >2hg4_A DEBS, 6-deoxyerythronolide B synthase; ketosynthase, acyltransferase, module 5, transferase; 2.73A {Saccharopolyspora erythraea} Length = 917 | Back alignment and structure |
|---|
Score = 141 bits (357), Expect = 5e-36
Identities = 86/279 (30%), Positives = 131/279 (46%), Gaps = 20/279 (7%)
Query: 198 MASGHVSMKYGFQGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMA 257
+ASG V+ G +GP TAC++G ++ A ++ + + +AGG +
Sbjct: 177 VASGRVAYCLGLEGPAMTVDTACSSGLTALHLAMESLRRDECGLALAGGVTVMSSPGAFT 236
Query: 258 GFCKSRALTTKYNGTPQEASRPFDCGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRG 317
F L +PF DGF + EG+GVLVL+ L A++ G + A +RG
Sbjct: 237 EFRSQGGLA------ADGRCKPFSKAADGFGLAEGAGVLVLQRLSAARREGRPVLAVLRG 290
Query: 318 YGMSGDAHH--ITQPHIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATA 375
++ D +T P G + RAL+ +G+++ VDYV AH T T LGD +E A
Sbjct: 291 SAVNQDGASNGLTAPS--GPAQQRVIRRALENAGVRAGDVDYVEAHGTGTRLGDPIEVHA 348
Query: 376 IRTVF-SDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLAIHHGVAPLTLNLAKPDPI 434
+ + + ++ L S K IGH AAG + AVLA+ HG P TL+ +P P
Sbjct: 349 LLSTYGAERDPDDPLWIGSVKSNIGHTQAAAGVAGVMKAVLALRHGEMPRTLHFDEPSPQ 408
Query: 435 FN---DNFMPLTASKDMPIS-----AALSNSFGFGGTNA 465
++ ++ P A +S SFG GTNA
Sbjct: 409 IEWDLGAVSVVSQARSWPAGERPRRAGVS-SFGISGTNA 446
|
| >2qo3_A Eryaii erythromycin polyketide synthase modules 3; ketosynthase, acyltransferase, phosphopantetheine, transfera; 2.59A {Saccharopolyspora erythraea} Length = 915 | Back alignment and structure |
|---|
Score = 139 bits (352), Expect = 2e-35
Identities = 86/279 (30%), Positives = 132/279 (47%), Gaps = 20/279 (7%)
Query: 198 MASGHVSMKYGFQGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMA 257
+ASG +S G +GP+ + TAC++ ++ A ++ G+S + V GG
Sbjct: 155 VASGRISYTMGLEGPSISVDTACSSSLVALHLAVESLRKGESSMAVVGGAAVMATPGVFV 214
Query: 258 GFCKSRALTTKYNGTPQEASRPFDCGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRG 317
F + RAL S+ F G DGF EG +++LE L A++ G ++ A VRG
Sbjct: 215 DFSRQRALA------ADGRSKAFGAGADGFGFSEGVTLVLLERLSEARRNGHEVLAVVRG 268
Query: 318 YGMSGD--AHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATA 375
++ D ++ ++ P G + +AL+ GL+ VD V AH T T LGD +EA A
Sbjct: 269 SALNQDGASNGLSAPS--GPAQRRVIRQALESCGLEPGDVDAVEAHGTGTALGDPIEANA 326
Query: 376 IRTVF-SDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLAIHHGVAPLTLNLAKPDPI 434
+ + D L S K IGH AAG + VLA+ +G P TL++ +P P
Sbjct: 327 LLDTYGRDRDADRPLWLGSVKSNIGHTQAAAGVTGLLKVVLALRNGELPATLHVEEPTPH 386
Query: 435 FN---DNFMPLTASKDMPIS-----AALSNSFGFGGTNA 465
+ L ++ AA+S +FG GTNA
Sbjct: 387 VDWSSGGVALLAGNQPWRRGERTRRAAVS-AFGISGTNA 424
|
| >3hhd_A Fatty acid synthase; transferase, multienzyme, megasynthase, fatty acid synthesis, acetylation, cytoplasm, fatty acid biosynthesis, hydrolase; 2.15A {Homo sapiens} PDB: 2jfk_A* 2jfd_A Length = 965 | Back alignment and structure |
|---|
Score = 117 bits (295), Expect = 4e-28
Identities = 62/279 (22%), Positives = 113/279 (40%), Gaps = 28/279 (10%)
Query: 198 MASGHVSMKYGFQGPNHAAV---TACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDAL 254
M + +S + F+GP ++ TAC++ ++ +A + I G + GG +
Sbjct: 141 MMANRLSFFFDFRGP---SIALDTACSSSLMALQNAYQAIHSGQCPAAIVGGINVLLKPN 197
Query: 255 SMAGFCKSRALTTKYNGTPQEASRPFDCGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAE 314
+ F + L+ P+ + FD +G+ EG ++L + A++ +YA
Sbjct: 198 TSVQFLRLGMLS------PEGTCKAFDTAGNGYCRSEGVVAVLLTKKSLARR----VYAT 247
Query: 315 VRGYGMSGDAHH---ITQPHIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTV 371
+ G + D +T P G + + +G+ +Y+ AH T T +GD
Sbjct: 248 ILNAGTNTDGFKEQGVTFPS--GDIQEQLIRSLYQSAGVAPESFEYIEAHGTGTKVGDPQ 305
Query: 372 EATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLAIHHGVAPLTLNLAKP 431
E I L STK +GH A+G +L++ HG+ L+ P
Sbjct: 306 ELNGITRALCATRQEP-LLIGSTKSNMGHPEPASGLAALAKVLLSLEHGLWAPNLHFHSP 364
Query: 432 DP---IFNDNFMPL--TASKDMPISAALSNSFGFGGTNA 465
+P D + + + ++ SFGFGG+N
Sbjct: 365 NPEIPALLDGRLQVVDQPLPVRGGNVGIN-SFGFGGSNV 402
|
| >1ulq_A Putative acetyl-COA acetyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 3.00A {Thermus thermophilus} SCOP: c.95.1.1 c.95.1.1 Length = 401 | Back alignment and structure |
|---|
Score = 47.5 bits (114), Expect = 5e-06
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 220 CATGAHSIGDAARMIQFGDSDVMVAGGTES 249
C +G ++ AAR I G+ V + G ES
Sbjct: 89 CGSGLEAVAQAARAIWAGEGKVYIGSGVES 118
|
| >1wdk_C 3-ketoacyl-COA thiolase; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: c.95.1.1 c.95.1.1 PDB: 1wdl_C* 1wdm_C* 2d3t_C* Length = 390 | Back alignment and structure |
|---|
Score = 46.7 bits (112), Expect = 8e-06
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 220 CATGAHSIGDAARMIQFGDSDVMVAGGTES 249
C + ++ AA+ I G+ DV V GG E
Sbjct: 94 CGSSMSALHTAAQAIMTGNGDVFVVGGVEH 123
|
| >3goa_A 3-ketoacyl-COA thiolase; metabolism, fatty acid, phospholipid, IDP01071, acyltransferase, cytoplasm, fatty acid metabolism; 1.70A {Salmonella typhimurium} Length = 387 | Back alignment and structure |
|---|
Score = 45.6 bits (109), Expect = 2e-05
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 220 CATGAHSIGDAARMIQFGDSDVMVAGGTES 249
C + ++ DAARMI GD+ V + GG E
Sbjct: 91 CGSSMQALHDAARMIMTGDAQVCLVGGVEH 120
|
| >1wl4_A Acetyl-coenzyme A acetyltransferase 2; thiolase fold; HET: COA; 1.55A {Homo sapiens} PDB: 1wl5_A Length = 397 | Back alignment and structure |
|---|
Score = 45.5 bits (109), Expect = 2e-05
Identities = 35/126 (27%), Positives = 50/126 (39%), Gaps = 26/126 (20%)
Query: 289 IGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQS 348
I +G+ +VL + A KRG A + + G P I G G I A+ +A+ ++
Sbjct: 254 INDGAAAVVLMKKSEADKRGLTPLARIVSWSQVGVE-----PSIMGIGPIPAIKQAVTKA 308
Query: 349 GLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTK-----GAI--GHL 401
G VD + EA A + A L + K GAI GH
Sbjct: 309 GWSLEDVDIFEIN----------EAFAAVSA----AIVKELGLNPEKVNIEGGAIALGHP 354
Query: 402 LGAAGA 407
LGA+G
Sbjct: 355 LGASGC 360
|
| >1wl4_A Acetyl-coenzyme A acetyltransferase 2; thiolase fold; HET: COA; 1.55A {Homo sapiens} PDB: 1wl5_A Length = 397 | Back alignment and structure |
|---|
Score = 42.1 bits (100), Expect = 3e-04
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 220 CATGAHSIGDAARMIQFGDSDVMVAGGTES 249
C +G ++ A + I GDS ++VAGG E+
Sbjct: 92 CGSGLKAVCLAVQSIGIGDSSIVVAGGMEN 121
|
| >2ib8_A Acetyl-COA acetyltransferase; thiolase fold, potassium ION, chloride, beta-alpha-beta-ALPH alpha-beta-BETA topology; HET: MES; 1.85A {Homo sapiens} PDB: 2ib7_A* 2ib9_A* 2ibu_A* 2ibw_A* 2iby_A* 2f2s_A* Length = 395 | Back alignment and structure |
|---|
Score = 45.6 bits (109), Expect = 2e-05
Identities = 25/126 (19%), Positives = 44/126 (34%), Gaps = 26/126 (20%)
Query: 289 IGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQS 348
+ +G+ LVL + AK+ A + + + P + A + LK
Sbjct: 254 LNDGAAALVLMTADAAKRLNVTPLARIVAFADAAVE-----PIDFPIAPVYAASMVLKDV 308
Query: 349 GLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTK-----GAI--GHL 401
GL+ + + EA ++ + A L K GA+ GH
Sbjct: 309 GLKKEDIAMWEVN----------EAFSLVVL----ANIKMLEIDPQKVNINGGAVSLGHP 354
Query: 402 LGAAGA 407
+G +GA
Sbjct: 355 IGMSGA 360
|
| >2ib8_A Acetyl-COA acetyltransferase; thiolase fold, potassium ION, chloride, beta-alpha-beta-ALPH alpha-beta-BETA topology; HET: MES; 1.85A {Homo sapiens} PDB: 2ib7_A* 2ib9_A* 2ibu_A* 2ibw_A* 2iby_A* 2f2s_A* Length = 395 | Back alignment and structure |
|---|
Score = 40.6 bits (96), Expect = 8e-04
Identities = 15/30 (50%), Positives = 20/30 (66%)
Query: 220 CATGAHSIGDAARMIQFGDSDVMVAGGTES 249
CA+G +I A++ + G DVMVAGG ES
Sbjct: 94 CASGMKAIMMASQSLMCGHQDVMVAGGMES 123
|
| >1afw_A 3-ketoacetyl-COA thiolase; fatty acid metabolism; 1.80A {Saccharomyces cerevisiae} SCOP: c.95.1.1 c.95.1.1 PDB: 1pxt_A Length = 393 | Back alignment and structure |
|---|
Score = 44.0 bits (105), Expect = 6e-05
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 220 CATGAHSIGDAARMIQFGDSDVMVAGGTES 249
C++G ++ D A I+ G D+ +A G ES
Sbjct: 101 CSSGLTAVNDIANKIKVGQIDIGLALGVES 130
|
| >3ss6_A Acetyl-COA acetyltransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha beta; HET: CSO; 1.70A {Bacillus anthracis} Length = 394 | Back alignment and structure |
|---|
Score = 44.0 bits (105), Expect = 7e-05
Identities = 15/30 (50%), Positives = 21/30 (70%)
Query: 220 CATGAHSIGDAARMIQFGDSDVMVAGGTES 249
C++G +I AA IQ G S+V+VAGG E+
Sbjct: 91 CSSGMQAIMSAAMQIQLGVSEVVVAGGVEA 120
|
| >3ss6_A Acetyl-COA acetyltransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha beta; HET: CSO; 1.70A {Bacillus anthracis} Length = 394 | Back alignment and structure |
|---|
Score = 42.8 bits (102), Expect = 1e-04
Identities = 32/123 (26%), Positives = 48/123 (39%), Gaps = 26/123 (21%)
Query: 292 GSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQ 351
GS VLVL E AK++G + A + GY ++G P I G G A+ + L++
Sbjct: 254 GSAVLVLMSEEKAKEKGLQPLARIVGYSVAG-----VDPKIMGIGPAPAIRKGLEKVDWS 308
Query: 352 SHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTK-----GAI--GHLLGA 404
D + + EA A + + A L K + GH +G
Sbjct: 309 LEDADLLEIN----------EAFAAQYL----AVEKELDLDREKVNVNGSGVGLGHPIGC 354
Query: 405 AGA 407
GA
Sbjct: 355 TGA 357
|
| >2vu1_A Acetyl-COA acetyltransferase; acyltransferase, PHB biosynthesis, thiolase FOL; HET: CSO OPI; 1.51A {Zoogloea ramigera} PDB: 1nl7_A* 1ou6_A* 2vu0_A* 1m4s_A* 2vu2_A* 2wkv_A* 2wku_A* 1m1t_A 1m3k_A 1m1o_A 1m3z_A* 2vtz_A* 2wl5_A* 2wkt_A* 2wl4_A* 1m4t_A* 2wl6_A 1qfl_A* 1dlv_A* 1dlu_A* ... Length = 392 | Back alignment and structure |
|---|
Score = 44.0 bits (105), Expect = 7e-05
Identities = 31/126 (24%), Positives = 53/126 (42%), Gaps = 26/126 (20%)
Query: 289 IGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQS 348
+ +G+ +L A +RG + + + G P + G G I A +AL+++
Sbjct: 249 LNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVD-----PKVMGTGPIPASRKALERA 303
Query: 349 GLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTK-----GAI--GHL 401
G + +D V A+ EA A + A + L + + GAI GH
Sbjct: 304 GWKIGDLDLVEAN----------EAFAAQAC----AVNKDLGWDPSIVNVNGGAIAIGHP 349
Query: 402 LGAAGA 407
+GA+GA
Sbjct: 350 IGASGA 355
|
| >2vu1_A Acetyl-COA acetyltransferase; acyltransferase, PHB biosynthesis, thiolase FOL; HET: CSO OPI; 1.51A {Zoogloea ramigera} PDB: 1nl7_A* 1ou6_A* 2vu0_A* 1m4s_A* 2vu2_A* 2wkv_A* 2wku_A* 1m1t_A 1m3k_A 1m1o_A 1m3z_A* 2vtz_A* 2wl5_A* 2wkt_A* 2wl4_A* 1m4t_A* 2wl6_A 1qfl_A* 1dlv_A* 1dlu_A* ... Length = 392 | Back alignment and structure |
|---|
Score = 42.1 bits (100), Expect = 3e-04
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 220 CATGAHSIGDAARMIQFGDSDVMVAGGTES 249
C +G ++ + I GD+ ++VAGG ES
Sbjct: 89 CGSGLRAVALGMQQIATGDASIIVAGGMES 118
|
| >4dd5_A Acetyl-COA acetyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, thiolase; 1.25A {Clostridium difficile} Length = 396 | Back alignment and structure |
|---|
Score = 44.0 bits (105), Expect = 7e-05
Identities = 12/30 (40%), Positives = 21/30 (70%)
Query: 220 CATGAHSIGDAARMIQFGDSDVMVAGGTES 249
C +G S+ A+++I GD+D+M+ GG E+
Sbjct: 93 CGSGLRSVSMASQLIALGDADIMLVGGAEN 122
|
| >4dd5_A Acetyl-COA acetyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, thiolase; 1.25A {Clostridium difficile} Length = 396 | Back alignment and structure |
|---|
Score = 42.8 bits (102), Expect = 2e-04
Identities = 35/123 (28%), Positives = 54/123 (43%), Gaps = 26/123 (21%)
Query: 292 GSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQ 351
G+ +LV+ E A++ G + A + YG +G P I G G + A +AL+ + +
Sbjct: 257 GAAMLVVMAKEKAEELGIEPLATIVSYGTAG-----VDPKIMGYGPVPATKKALEAANMT 311
Query: 352 SHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTK-----GAI--GHLLGA 404
+D V A+ EA A ++V A L K GAI GH +G
Sbjct: 312 IEDIDLVEAN----------EAFAAQSV----AVIRDLNIDMNKVNVNGGAIAIGHPIGC 357
Query: 405 AGA 407
+GA
Sbjct: 358 SGA 360
|
| >4e1l_A Acetoacetyl-COA thiolase 2; 3-layer(ABA) sandwich, transferase; 2.00A {Clostridium difficile} Length = 395 | Back alignment and structure |
|---|
Score = 44.0 bits (105), Expect = 8e-05
Identities = 14/30 (46%), Positives = 22/30 (73%)
Query: 220 CATGAHSIGDAARMIQFGDSDVMVAGGTES 249
C +G S+ AA+ I G++DV++AGGTE+
Sbjct: 91 CGSGLKSVQLAAQSITSGENDVVIAGGTEN 120
|
| >4e1l_A Acetoacetyl-COA thiolase 2; 3-layer(ABA) sandwich, transferase; 2.00A {Clostridium difficile} Length = 395 | Back alignment and structure |
|---|
Score = 43.6 bits (104), Expect = 9e-05
Identities = 36/123 (29%), Positives = 60/123 (48%), Gaps = 26/123 (21%)
Query: 292 GSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQ 351
G+ +L+L + A + G + A+++ Y +G +P + G G I A +ALK++GL
Sbjct: 256 GAAMLILMSQQKADELGIRPLAKIKSYASAG-----VEPEVMGTGPIPATRKALKKAGLS 310
Query: 352 SHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTK-----GAI--GHLLGA 404
+ +D + A+ EA A + + A L S+K GAI GH +GA
Sbjct: 311 INDIDLIEAN----------EAFAAQAL----AVKNELQIDSSKLNVNGGAIALGHPIGA 356
Query: 405 AGA 407
+GA
Sbjct: 357 SGA 359
|
| >2iik_A 3-ketoacyl-COA thiolase, peroxisomal; fatty acid metabolism, structural genomics, structural genom consortium, SGC, transferase; 2.55A {Homo sapiens} Length = 418 | Back alignment and structure |
|---|
Score = 43.3 bits (103), Expect = 1e-04
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 220 CATGAHSIGDAARMIQFGDSDVMVAGGTES 249
C++G ++ A I+ G D+ +A G ES
Sbjct: 117 CSSGLQAVASIAGGIRNGSYDIGMACGVES 146
|
| >2wu9_A 3-ketoacyl-COA thiolase 2, peroxisomal; cysteine oxidation, fatty acid metabolism, oxylipin biosynthesis, plant lipid metabolism; 1.50A {Arabidopsis thaliana} PDB: 2c7y_A 2c7z_A 2wua_A Length = 442 | Back alignment and structure |
|---|
Score = 43.3 bits (103), Expect = 1e-04
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 220 CATGAHSIGDAARMIQFGDSDVMVAGGTES 249
C++G ++ D A I+ G D+ + G ES
Sbjct: 118 CSSGLQAVADVAAAIKAGFYDIGIGAGLES 147
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 43.3 bits (101), Expect = 2e-04
Identities = 80/542 (14%), Positives = 147/542 (27%), Gaps = 144/542 (26%)
Query: 4 SSWRRLFFTRRFDLSRYFSSSSR----AEVFDP------PPLSPLRR----------VVV 43
S + Y R +VF P LR+ V++
Sbjct: 96 SPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLI 155
Query: 44 TGIGMVTPLGCGAETTWRRLIVGECGIREITPED--------LKMGNFDRETQLHAFGQL 95
G+ LG G TW + + C + L + N + + L
Sbjct: 156 D--GV---LGSG--KTW--VALDVC--LSYKVQCKMDFKIFWLNLKNCNSPETV--LEML 202
Query: 96 TSKVAAVVP--CGISSGEFNEDSWLNSKDHRSIARFIA---Y--ALCAADEALHDAK-WL 147
+ + P S N ++S + R + Y L + +AK W
Sbjct: 203 QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAE-LRRLLKSKPYENCLLVLLN-VQNAKAWN 260
Query: 148 PSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKY 207
+ K + + ++D + AA L S P + ++ ++ +
Sbjct: 261 AFNLSCK----ILLTTRFKQVTDFLSAATT-THISLDHHSMTLTPDEVKSLLLKYLDCRP 315
Query: 208 GFQGPNHAAVT---ACATGAHSIGDAARMIQF-----GD--SDVMVAGGTESSIDALSMA 257
P T + A SI D D + ++ ESS++ L
Sbjct: 316 -QDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTII-----ESSLNVLE-- 367
Query: 258 GFCKSRALTTKYNGTPQEASRPF-DCG--RDGFVIGEGSGVLVL-------EELEH---- 303
P E + F I +L L ++
Sbjct: 368 ---------------PAEYRKMFDRLSVFPPSAHIPT--ILLSLIWFDVIKSDVMVVVNK 410
Query: 304 -AKKRGAKIYAEVRGYGMSGDAHHI---TQPHIDGKGA----ILA---MTRALKQSGLQS 352
K + + + I + ++ + A I+ + + L
Sbjct: 411 LHKYSLVEKQPKESTISI----PSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIP 466
Query: 353 HQVD-----YVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTK-GAIGHLLGAAG 406
+D ++ H + + T R VF D F K A+G
Sbjct: 467 PYLDQYFYSHIGHHLKNIEHPE--RMTLFRMVFLD------FRFLEQKIRHDSTAWNASG 518
Query: 407 AVEAIFAVLAIHHGVAPLTLNLAKPDPIFND--NFMP-----LTASKDMPI-SAALSNSF 458
++ L + + N K + + N +F+P L SK + AL
Sbjct: 519 SILNTLQQLKFYKPY--ICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAED 576
Query: 459 GF 460
Sbjct: 577 EA 578
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 473 | |||
| 3o04_A | 413 | LMO2201 protein, beta-keto-acyl carrier protein sy | 100.0 | |
| 1e5m_A | 416 | KAS II, beta ketoacyl acyl carrier protein synthas | 100.0 | |
| 3ho9_A | 427 | 3-oxoacyl-[acyl-carrier-protein] synthase 2; FABF, | 100.0 | |
| 4ewg_A | 412 | Beta-ketoacyl synthase; ssgcid, structural genomic | 100.0 | |
| 2gqd_A | 437 | 3-oxoacyl-[acyl-carrier-protein] synthase 2; dupli | 100.0 | |
| 3kzu_A | 428 | 3-oxoacyl-(acyl-carrier-protein) synthase II; seat | 100.0 | |
| 2ix4_A | 431 | 3-oxoacyl-[acyl-carrier-protein] synthase; beta-ke | 100.0 | |
| 2iwz_A | 438 | 3-oxoacyl-[acyl-carrier-protein] synthase; mitocho | 100.0 | |
| 1ox0_A | 430 | Beta ketoacyl-acyl carrier protein synthase; trans | 100.0 | |
| 4ddo_A | 451 | 3-oxoacyl-[acyl-carrier-protein] synthase 2; ssgci | 100.0 | |
| 3mqd_A | 428 | Beta-ketoacyl synthase; ssgcid, ALS collaborative | 100.0 | |
| 1j3n_A | 408 | 3-oxoacyl-(acyl-carrier protein) synthase II; cond | 100.0 | |
| 1tqy_B | 415 | Actinorhodin polyketide putative beta-ketoacyl SY; | 100.0 | |
| 2vba_A | 406 | 3-oxoacyl-[acyl-carrier-protein] synthase 1; cytop | 100.0 | |
| 1tqy_A | 424 | Beta-ketoacyl synthase/acyl transferase; alpha-bet | 100.0 | |
| 2wge_A | 416 | 3-oxoacyl-[acyl-carrier-protein] synthase 1; beta | 100.0 | |
| 2gp6_A | 434 | 3-oxoacyl-[acyl-carrier-protein] synthase 2; thiol | 100.0 | |
| 3hhd_A | 965 | Fatty acid synthase; transferase, multienzyme, meg | 100.0 | |
| 2qo3_A | 915 | Eryaii erythromycin polyketide synthase modules 3; | 100.0 | |
| 2hg4_A | 917 | DEBS, 6-deoxyerythronolide B synthase; ketosynthas | 100.0 | |
| 2vz8_A | 2512 | Fatty acid synthase; transferase, phosphopantethei | 100.0 | |
| 2uv9_A | 1878 | Fatty acid synthase alpha subunits; fungal, dehydr | 100.0 | |
| 2uv8_A | 1887 | Fatty acid synthase subunit alpha (FAS2); fatty ac | 100.0 | |
| 2pff_A | 1688 | Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl | 100.0 | |
| 3zen_D | 3089 | Fatty acid synthase; transferase, mycolic acid bio | 100.0 | |
| 1ulq_A | 401 | Putative acetyl-COA acetyltransferase; structural | 100.0 | |
| 1wl4_A | 397 | Acetyl-coenzyme A acetyltransferase 2; thiolase fo | 100.0 | |
| 1wdk_C | 390 | 3-ketoacyl-COA thiolase; alpha2BETA2 heterotetrame | 100.0 | |
| 2wu9_A | 442 | 3-ketoacyl-COA thiolase 2, peroxisomal; cysteine o | 100.0 | |
| 2vu1_A | 392 | Acetyl-COA acetyltransferase; acyltransferase, PHB | 100.0 | |
| 2iik_A | 418 | 3-ketoacyl-COA thiolase, peroxisomal; fatty acid m | 100.0 | |
| 1afw_A | 393 | 3-ketoacetyl-COA thiolase; fatty acid metabolism; | 100.0 | |
| 2ib8_A | 395 | Acetyl-COA acetyltransferase; thiolase fold, potas | 100.0 | |
| 4dd5_A | 396 | Acetyl-COA acetyltransferase; structural genomics, | 100.0 | |
| 3ss6_A | 394 | Acetyl-COA acetyltransferase; structural genomics, | 99.98 | |
| 3goa_A | 387 | 3-ketoacyl-COA thiolase; metabolism, fatty acid, p | 99.97 | |
| 4e1l_A | 395 | Acetoacetyl-COA thiolase 2; 3-layer(ABA) sandwich, | 99.97 | |
| 1ub7_A | 322 | 3-oxoacyl-[acyl-carrier protein] synthase; fatty a | 99.97 | |
| 3svk_A | 407 | Acetyl-COA acetyltransferase; ssgcid, NIH, niaid, | 99.97 | |
| 2ebd_A | 309 | 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, | 99.96 | |
| 1hnj_A | 317 | Beta-ketoacyl-acyl carrier protein synthase III; F | 99.96 | |
| 1mzj_A | 339 | Beta-ketoacylsynthase III; beta-ketosynthase, arom | 99.96 | |
| 1zow_A | 313 | 3-oxoacyl-[acyl-carrier-protein] synthase III; FAB | 99.95 | |
| 2x3e_A | 331 | 3-oxoacyl-[acyl-carrier-protein] synthase 3; HED, | 99.94 | |
| 1u6e_A | 335 | 3-oxoacyl-[acyl-carrier-protein] synthase III; tra | 99.94 | |
| 1u0m_A | 382 | Putative polyketide synthase; type III polyketide | 99.93 | |
| 4egv_A | 520 | Acetyl-COA acetyltransferase; NEW SUB-family, thio | 99.93 | |
| 2h84_A | 374 | Steely1; thiolase-fold, type III polyketide syntha | 99.93 | |
| 3tsy_A | 979 | Fusion protein 4-coumarate--COA ligase 1, resvera | 99.93 | |
| 1ted_A | 393 | PKS18; thiolase fold, substrate binding tunnel, tr | 99.91 | |
| 3s21_A | 345 | 3-oxoacyl-[ACP] synthase III; non-decarboxylative | 99.9 | |
| 4dfe_A | 333 | 3-oxoacyl-[acyl-carrier-protein] synthase 3; ssgci | 99.89 | |
| 2d3m_A | 406 | Pentaketide chromone synthase; chalcone synthase, | 99.84 | |
| 3led_A | 392 | 3-oxoacyl-acyl carrier protein synthase III; struc | 99.84 | |
| 3gwa_A | 365 | 3-oxoacyl-(acyl-carrier-protein) synthase III; str | 99.83 | |
| 3il3_A | 323 | 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, | 99.8 | |
| 3h78_A | 359 | PQS biosynthetic enzyme; PQSD, anthranilic acid, a | 99.8 | |
| 3s3l_A | 357 | CERJ; acyltransferase, FABH homologue, KS III homo | 99.79 | |
| 1xes_A | 413 | Dihydropinosylvin synthase; native structure, tran | 99.79 | |
| 3il6_A | 321 | 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, | 99.78 | |
| 1ee0_A | 402 | 2-pyrone synthase; polyketide synthase, thiolase f | 99.78 | |
| 1xpm_A | 396 | 3-hydroxy-3-methylglutaryl COA synthase; HMG-COA s | 99.78 | |
| 2p0u_A | 413 | Stilbenecarboxylate synthase 2; polyketide synthas | 99.76 | |
| 3a5r_A | 387 | Benzalacetone synthase; chalcone synthase, type II | 99.76 | |
| 4efi_A | 354 | 3-oxoacyl-(acyl-carrier protein) synthase; structu | 99.76 | |
| 4ewp_A | 350 | 3-oxoacyl-[acyl-carrier-protein] synthase 3; trans | 99.75 | |
| 1i88_A | 389 | CHS2, chalcone synthase 2; polyketide synthase, tr | 99.74 | |
| 3ov2_A | 393 | Curcumin synthase; type III polyketide synthase, t | 99.74 | |
| 3awk_A | 402 | Chalcone synthase-like polyketide synthase; type I | 99.73 | |
| 2f82_A | 450 | HMG-COA synthase; HMGS1, transferase; 2.10A {Brass | 99.72 | |
| 3oit_A | 387 | OS07G0271500 protein; type III polyketide synthase | 99.68 | |
| 3e1h_A | 465 | PKSIIINC, putative uncharacterized protein; resorc | 99.67 | |
| 3v4n_A | 388 | HMG-COA synthase; hydroxymethylglutaryl-COA syntha | 99.62 | |
| 3v7i_A | 413 | Putative polyketide synthase; type III polyketide | 99.62 | |
| 3euo_A | 379 | Type III pentaketide synthase; alpha helix, acyltr | 99.62 | |
| 3sqz_A | 425 | Putative hydroxymethylglutaryl-COA synthase; thiol | 99.62 | |
| 3lma_A | 347 | Stage V sporulation protein AD (spovad); NESG, str | 99.62 | |
| 2v4w_A | 460 | Hydroxymethylglutaryl-COA synthase, mitochondrial; | 99.57 | |
| 2p8u_A | 478 | Hydroxymethylglutaryl-COA synthase, cytoplasmic; h | 99.57 | |
| 2wya_A | 460 | Hydroxymethylglutaryl-COA synthase, mitochondrial; | 99.39 | |
| 4e1l_A | 395 | Acetoacetyl-COA thiolase 2; 3-layer(ABA) sandwich, | 82.8 | |
| 4dd5_A | 396 | Acetyl-COA acetyltransferase; structural genomics, | 81.71 |
| >3o04_A LMO2201 protein, beta-keto-acyl carrier protein synthase II; csgid, structural genomics; 1.85A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-77 Score=607.81 Aligned_cols=412 Identities=45% Similarity=0.785 Sum_probs=385.1
Q ss_pred CCCCceEEEecceecccCCCHHHHHHHHHcCCCceeeCCccccccCCCCccccccccCCcccceeEEecCCCCCCCCCcc
Q 011989 36 SPLRRVVVTGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSKVAAVVPCGISSGEFNED 115 (473)
Q Consensus 36 ~~~~~v~ItG~g~~~p~g~~~~~~~~~l~~G~s~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~~ 115 (473)
|++++|+|||||+++|.|.+.++||++|++|++++++++.++ ...++.++++.+++ ||+.
T Consensus 1 M~~~~v~ItG~g~~~P~g~~~~~~w~~l~~g~~~i~~~~~~~--------------~~~~~~~~~~~v~~------fd~~ 60 (413)
T 3o04_A 1 MDKRRVVVTGIGAVTPIGNDAETSWENAKKGVNGVAKMTRLN--------------PDDFPVKIAAELKD------FDVE 60 (413)
T ss_dssp CCCCCEEEEEEEEEBTTBSSHHHHHHHHHTTCCCEEECCSSC--------------GGGSSCCEEECCSS------CCGG
T ss_pred CCCCCEEEEEeEEECCCCCCHHHHHHHHHcCCCceeeCCccc--------------cccCccccccccCC------CChh
Confidence 456899999999999999999999999999999999998655 23345567777776 9999
Q ss_pred cCCCchhhhccCHHHHHHHHHHHHHHHHcCCCCCCCCCCCceeEEEecCCCChhhHHHHHHHHHHhccccCCCcchhhhh
Q 011989 116 SWLNSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRIL 195 (473)
Q Consensus 116 ~~~~~~~~~~~~~~~~la~~aa~~Al~dAgl~~~~~~~~~~~gvivg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (473)
+|+++++.+.|+|+++|+++|+++||+|||+++.++ +..+++|++|++.+........+..+...+...++|+.+++..
T Consensus 61 ~~i~~~~~~~~d~~~~l~l~Aa~~AL~dAGl~~~~i-d~~~~gv~vgt~~g~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 139 (413)
T 3o04_A 61 KYLEKKEARKMDRFTHYAIASAEMAVQDSGLVIDDS-NANRVGVWIGSGIGGMETFETQYEIFLNRGHRRVSPFFVPMMI 139 (413)
T ss_dssp GTSCHHHHTTSCHHHHHHHHHHHHHHHHHTCCCCTT-TGGGEEEEEECSSCCHHHHHHHHHHHHHHCTTTSCTTHHHHHS
T ss_pred hccCHHHHhhCCHHHHHHHHHHHHHHHHcCCChhHc-CccceEEEEccccCcHHHHHHHHHHHHhcCCCccCchhhhccc
Confidence 999999999999999999999999999999998887 4899999999999999999999999988999999999999999
Q ss_pred hhHHHHHHHHhcCCCCCeeeecCCcchHHHHHHHHHHHHHcCCCCEEEEeecCCCcChHHHHHHhhhhccccccCCCCCC
Q 011989 196 INMASGHVSMKYGFQGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQE 275 (473)
Q Consensus 196 ~~~~a~~ia~~lgl~Gp~~~v~~acasg~~Al~~A~~~I~~G~~d~vlv~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (473)
.+.++++|++.||++||+++|+++|+|++.||.+|+++|++|++|+|||+|+|.++++.....+...+.++. ...++.
T Consensus 140 ~~~~a~~ia~~lgl~gp~~~v~~aCss~~~Al~~A~~~I~~G~~d~~lvgG~e~~~~~~~~~~~~~~~~ls~--~~~p~~ 217 (413)
T 3o04_A 140 PDMGSGQVSIRFGAKGINSTTVTACATATNSIGDAFKVIERGDADAMITGGAEAPITKMSLAGFTANKALSL--NPDPET 217 (413)
T ss_dssp TTHHHHHHHHHHTCCSCEECCCCGGGHHHHHHHHHHHHHHTTSCSEEEEEEEECCCSHHHHHHHHHTTCBCC--CCCTTT
T ss_pred ccHHHHHHHHHhCCCCcceeecchhHHHHHHHHHHHHHHHcCCCCEEEEeEEcccCCHHHHHHHHhcccccC--CCCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999888874 334678
Q ss_pred CCcCccCCCCceeeccceEEEEEccchHHHhcCCeEEEEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCc
Q 011989 276 ASRPFDCGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQV 355 (473)
Q Consensus 276 ~~~pfd~~~~G~~~geGaaavvL~~~~~A~~~g~~~~a~i~g~~~~~d~~~~~~~~~~~~~~~~a~~~al~~agl~~~dI 355 (473)
.++|||.+++|+++||||+++||++++.|+++|.+++++|.|++.++|+.+.+.|.+...++.++++++|+++|++++||
T Consensus 218 ~~~pfd~~~~g~~~gdGAaavvL~~~~~A~~~g~~i~a~i~g~~~~~dg~~~~~~~~~~~~~~~a~~~al~~agl~~~dI 297 (413)
T 3o04_A 218 ACRPFDKDRDGFIIGEGAGIVILEEYEHAKARGAKIYAEIVGYGATGDAYHITAPAPNGEGAARAMKMAIDDAGLTPDKV 297 (413)
T ss_dssp SCCTTBTTCCSBCBBCEEEEEEEEEHHHHHHHTCCCCEEEEEEEEEECCSCSSSCCGGGHHHHHHHHHHHHHHTCCGGGC
T ss_pred CcCCCcCCCCCceEeccEEEEEEeeHHHHHhCCCeEEEEEEEEEEcCCCCCCCCCCCCHHHHHHHHHHHHHHcCCCHHHc
Confidence 89999999999999999999999999999999999999999999999999988888888899999999999999999999
Q ss_pred cEEEEcCCCCCCCCHHHHHHHHHHhhcccCCCCceeeccccchhhhHHhHHHHHHHHHHHHHHhCccCCCCCCCCCCCCC
Q 011989 356 DYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLAIHHGVAPLTLNLAKPDPIF 435 (473)
Q Consensus 356 d~v~~hgtgt~~~D~~E~~a~~~~~~~~~~~~~~~v~s~k~~~Gh~~~AsG~~~li~~~~~l~~~~ipp~~~~~~~~~~~ 435 (473)
|||++|||||+++|.+|..++.++|+... .++++++.|+++||+++|+|++++++++++|+++++||++|+++|+|.+
T Consensus 298 d~ve~HgtgT~~~d~~e~~al~~~~~~~~--~~~~v~s~k~~~GH~~gAsG~~~~~~~~~~l~~~~ipp~~~~~~~~~~~ 375 (413)
T 3o04_A 298 DYINAHGTSTPYNDEYETQAIKTVFGEHA--KKLAISSTKSMTGHTLGASGGIEAIFALLTIRDNIIAPTIHLKNQDEVC 375 (413)
T ss_dssp CEEECCCCCCHHHHHHHHHHHHHHHGGGT--TTSEEECTHHHHCBCGGGHHHHHHHHHHHHHHHTEECCBTTCCSBCSSC
T ss_pred CEEEEeCCcCcccCHHHHHHHHHHhcccC--CCCceecccccccccHHHHHHHHHHHHHHHHHhCCcCCCCCCCCCCCCC
Confidence 99999999999999999999999998653 4699999999999999999999999999999999999999999999999
Q ss_pred CCCCCccccCCCCCCcEEEEeccccccceeeEEEeecC
Q 011989 436 NDNFMPLTASKDMPISAALSNSFGFGGTNASLLFTKCQ 473 (473)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~l~~s~g~gG~~~~~vl~~~~ 473 (473)
++++++ .+.+..+++++++|||||||+|+|+||++|+
T Consensus 376 ~~~~~~-~~~~~~~~~~~~~~sfgfgG~na~~vl~~~~ 412 (413)
T 3o04_A 376 DLDYVP-NEAREANVNVVISNSFGFGGHNATLVFKRIE 412 (413)
T ss_dssp CSCCCB-SSCEECCCCEEEEEEEETTTEEEEEEEECCC
T ss_pred CcccCC-CcccCCCCCEEEEeCccCCceEEEEEEEeCC
Confidence 999998 6667778999999999999999999999985
|
| >1e5m_A KAS II, beta ketoacyl acyl carrier protein synthase II; condensing enzyme, biosynthetic role, carbon-carbon bond formation; 1.54A {Synechocystis SP} SCOP: c.95.1.1 c.95.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-77 Score=606.84 Aligned_cols=412 Identities=46% Similarity=0.763 Sum_probs=379.9
Q ss_pred CCCceEEEecceecccCCCHHHHHHHHHcCCCceeeCCccccccCCCCccccccccCCcccceeEEecCCCCCCCCCccc
Q 011989 37 PLRRVVVTGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSKVAAVVPCGISSGEFNEDS 116 (473)
Q Consensus 37 ~~~~v~ItG~g~~~p~g~~~~~~~~~l~~G~s~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~~~ 116 (473)
+|++|+|||||+++|.|.+.++||++|++|++++++++.++ ...++.++++.+++ ||+.+
T Consensus 5 ~m~~v~I~G~g~~~p~g~~~~~~w~~l~~g~~~i~~~~~~~--------------~~~~~~~~~~~i~~------fd~~~ 64 (416)
T 1e5m_A 5 EKKRVVVTGLGAITPIGNTLQDYWQGLMEGRNGIGPITRFD--------------ASDQACRFGGEVKD------FDATQ 64 (416)
T ss_dssp -CCCEEEEEEEEEBTTBSSHHHHHHHHHTTCCCEEECCSSC--------------CTTSSCCEEECCCS------CCGGG
T ss_pred CCCCEEEEeeeEECCCCCCHHHHHHHHHcCCCeEeeCCccc--------------cccCccceeEEeCC------CCccc
Confidence 45789999999999999999999999999999999997644 23455667787775 99988
Q ss_pred CCCchhhhccCHHHHHHHHHHHHHHHHcCCCCCCCCCCCceeEEEecCCCChhhHHHHHHHHHHhccccCCCcchhhhhh
Q 011989 117 WLNSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILI 196 (473)
Q Consensus 117 ~~~~~~~~~~~~~~~la~~aa~~Al~dAgl~~~~~~~~~~~gvivg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (473)
++++++.+.|||+++|+++++++||+|||++++++ +.++++|++|++.++.....+++..+...+...++|+.+++.+.
T Consensus 65 ~~~~~~~~~~d~~~~l~l~aa~~Al~dAg~~~~~i-~~~~~gv~~g~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 143 (416)
T 1e5m_A 65 FLDRKEAKRMDRFCHFAVCASQQAINDAKLVINEL-NADEIGVLIGTGIGGLKVLEDQQTILLDKGPSRCSPFMIPMMIA 143 (416)
T ss_dssp TSCHHHHHTSCHHHHHHHHHHHHHHHHHTCCCCTT-TGGGEEEEEECSSCSHHHHHHHHHHHHHHCGGGSCTTHHHHHST
T ss_pred cCCHHHHHhcCHHHHHHHHHHHHHHHHcCCChhhc-CccceEEEEeecCCcHHHHHHHHHHHHhcCcccCChhHhhhhhh
Confidence 89999999999999999999999999999998877 47899999999999988888888877788888899999999999
Q ss_pred hHHHHHHHHhcCCCCCeeeecCCcchHHHHHHHHHHHHHcCCCCEEEEeecCCCcChHHHHHHhhhhccccccCCCCCCC
Q 011989 197 NMASGHVSMKYGFQGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEA 276 (473)
Q Consensus 197 ~~~a~~ia~~lgl~Gp~~~v~~acasg~~Al~~A~~~I~~G~~d~vlv~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (473)
+.++++|++.||++||+++|+++|+|++.||++|+++|++|++|++||+|+|.++++..+..|...+.++.+ +..|+..
T Consensus 144 ~~~a~~ia~~lgl~gp~~~v~~aCsS~l~Al~~A~~~I~~G~~d~~LvgG~e~~~~~~~~~~~~~~~~ls~~-~~~p~~~ 222 (416)
T 1e5m_A 144 NMASGLTAINLGAKGPNNCTVTACAAGSNAIGDAFRLVQNGYAKAMICGGTEAAITPLSYAGFASARALSFR-NDDPLHA 222 (416)
T ss_dssp THHHHHHHHHHTCCSCEECCCCGGGHHHHHHHHHHHHHHTTSCSEEEEEEEECCCSHHHHHHHHHTTCBCCC-TTCGGGT
T ss_pred HHHHHHHHHHhCCCCceeCccchhHHHHHHHHHHHHHHHcCCCCEEEEeeecccCCHHHHHHHHHcCCccCC-CCCCccc
Confidence 999999999999999999999999999999999999999999999999999998888888888888888753 3346789
Q ss_pred CcCccCCCCceeeccceEEEEEccchHHHhcCCeEEEEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCcc
Q 011989 277 SRPFDCGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVD 356 (473)
Q Consensus 277 ~~pfd~~~~G~~~geGaaavvL~~~~~A~~~g~~~~a~i~g~~~~~d~~~~~~~~~~~~~~~~a~~~al~~agl~~~dId 356 (473)
|+|||.+++|+++|||++++||++++.|+++|+++|++|.|++.++|+.+++.|++.+.++.++++++|+++|++++|||
T Consensus 223 ~rpfd~~~~G~v~geGaaavvL~~~~~A~~~g~~i~a~I~g~~~~~d~~~~~~p~~~~~~~~~ai~~al~~agl~~~dId 302 (416)
T 1e5m_A 223 SRPFDKDRDGFVMGEGSGILILEELESALARGAKIYGEMVGYAMTCDAYHITAPVPDGRGATRAIAWALKDSGLKPEMVS 302 (416)
T ss_dssp CCTTBTTCCSBCBBCEEEEEEEEEHHHHHHTTCCCCEEEEEEEEEECCSCSSSCCTTCHHHHHHHHHHHHHHTCCGGGCC
T ss_pred cccCccCCCCceeeeeEEEEEECcHHHHHHCCCeEEEEEEEEEEccCCCCCCCCCCCHHHHHHHHHHHHHHcCCCHhHCC
Confidence 99999999999999999999999999999999999999999999999999888888888999999999999999999999
Q ss_pred EEEEcCCCCCCCCHHHHHHHHHHhhcccCCCCceeeccccchhhhHHhHHHHHHHHHHHHHHhCccCCCCCCCCCCCCCC
Q 011989 357 YVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLAIHHGVAPLTLNLAKPDPIFN 436 (473)
Q Consensus 357 ~v~~hgtgt~~~D~~E~~a~~~~~~~~~~~~~~~v~s~k~~~Gh~~~AsG~~~li~~~~~l~~~~ipp~~~~~~~~~~~~ 436 (473)
||++|+|||+.+|.+|..++.++|+... .+++++++|+++||+++|+|++++++++++|++++|||++|+++|+|.++
T Consensus 303 ~ve~Hgtgt~~~D~~E~~al~~~~g~~~--~~~~v~s~k~~~GH~~gAaG~~~~i~~~~~l~~~~ipp~~~~~~~~p~~~ 380 (416)
T 1e5m_A 303 YINAHGTSTPANDVTETRAIKQALGNHA--YNIAVSSTKSMTGHLLGGSGGIEAVATVMAIAEDKVPPTINLENPDPECD 380 (416)
T ss_dssp EEECCCCSCHHHHHHHHHHHHHHHGGGG--GGSEEECTHHHHCBCGGGHHHHHHHHHHHHHHHTEECCBTTCSSBCTTCC
T ss_pred EEEEECCCCcCcCHHHHHHHHHHHcccC--CCCeeeCcchhhcccHHHHHHHHHHHHHHHHhcCCcCCCCCCCCCCCCCC
Confidence 9999999999999999999999997642 46899999999999999999999999999999999999999999999999
Q ss_pred CCCCccccCCCCCCcEEEEeccccccceeeEEEeecC
Q 011989 437 DNFMPLTASKDMPISAALSNSFGFGGTNASLLFTKCQ 473 (473)
Q Consensus 437 ~~~~~~~~~~~~~~~~~l~~s~g~gG~~~~~vl~~~~ 473 (473)
+++++ .+.+..+++++++|||||||+|+|+||++|+
T Consensus 381 ~~~v~-~~~~~~~~~~a~~~sfGfGG~n~~~vl~~~~ 416 (416)
T 1e5m_A 381 LDYVP-GQSRALIVDVALSNSFGFGGHNVTLAFKKYQ 416 (416)
T ss_dssp SCCCB-SSCEECCCSEEEEEEEETTTEEEEEEEECCC
T ss_pred ccccC-CccccCCCCEEEEccccCCCeeEEEEEEeCC
Confidence 99988 5667778999999999999999999999985
|
| >3ho9_A 3-oxoacyl-[acyl-carrier-protein] synthase 2; FABF, platensimycin, platencin A1, KAS2, acyltransferase, fatty acid biosynthesis; HET: N3A; 1.90A {Escherichia coli} PDB: 3hnz_A* 3ho2_A* 3i8p_A* 3g11_A* 2gfx_A* 3g0y_A* 2gfv_A* 2gfw_A 2gfy_A* 1kas_A 1b3n_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-77 Score=610.44 Aligned_cols=415 Identities=46% Similarity=0.802 Sum_probs=382.5
Q ss_pred CCCCCCCceEEEecceecccCCCHHHHHHHHHcCCCceeeCCccccccCCCCccccccccCCcccceeEEecCCCCCCCC
Q 011989 33 PPLSPLRRVVVTGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSKVAAVVPCGISSGEF 112 (473)
Q Consensus 33 ~~~~~~~~v~ItG~g~~~p~g~~~~~~~~~l~~G~s~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f 112 (473)
.+....++|+|||||+++|+|.++++||++|++|++++++++.++ ...++.++++.+++ |
T Consensus 12 ~~~~~~~~v~I~G~g~~~p~g~~~~~~w~~l~~g~~~i~~~~~~~--------------~~~~~~~~~~~v~~------f 71 (427)
T 3ho9_A 12 SACVSKRRVVVTGLGMLSPVGNTVESTWKALLAGQSGISLIDHFD--------------TSAYATKFAGLVKD------F 71 (427)
T ss_dssp -----CCCEEEEEEEEEBTTBSSHHHHHHHHHTTCCCEEECCSSC--------------CTTCSCCEEECCSS------C
T ss_pred CCCCCCCCEEEEeeeEECCCCCCHHHHHHHHHcCCCceeeCCccc--------------cccCccceeeEcCC------C
Confidence 334456799999999999999999999999999999999998655 23456677888876 9
Q ss_pred CcccCCCchhhhccCHHHHHHHHHHHHHHHHcCCCCCCCCCCCceeEEEecCCCChhhHHHHHHHHHHhccccCCCcchh
Q 011989 113 NEDSWLNSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIP 192 (473)
Q Consensus 113 d~~~~~~~~~~~~~~~~~~la~~aa~~Al~dAgl~~~~~~~~~~~gvivg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (473)
|+.+|+++++.+.|||+++|+++|+++||+|||+++.++ +..++||++|++.++......++..+...+...++|+.++
T Consensus 72 d~~~~i~~~~~~~~d~~~~l~l~aa~~AL~dAGl~~~~i-~~~~~gv~vg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (427)
T 3ho9_A 72 NCEDIISRKEQRKMDAFIQYGIVAGVQAMQDSGLEITEE-NATRIGAAIGSGIGGLGLIEENHTSLMNGGPRKISPFFVP 150 (427)
T ss_dssp CCTTTSCHHHHTTSCHHHHHHHHHHHHHHHHHTCCCCTT-TGGGEEEEEECSSCCHHHHHHHHHHHHHHCGGGSCTTHHH
T ss_pred ChhhcCCHHHHhhCCHHHHHHHHHHHHHHHHCCCCcccc-cccceEEEEccccccHHHHHHHHHHHHhcCccccCcceec
Confidence 999999999999999999999999999999999998877 4889999999999999998888888888889999999999
Q ss_pred hhhhhHHHHHHHHhcCCCCCeeeecCCcchHHHHHHHHHHHHHcCCCCEEEEeecCCCcChHHHHHHhhhhccccccCCC
Q 011989 193 RILINMASGHVSMKYGFQGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGT 272 (473)
Q Consensus 193 ~~~~~~~a~~ia~~lgl~Gp~~~v~~acasg~~Al~~A~~~I~~G~~d~vlv~g~d~~~~~~~~~~~~~~~~~~~~~~~~ 272 (473)
+...+.++++|++.||++||+++|+++|+|++.||.+|+++|++|++|+|||+|+|.++.+..+..+...+.++.. ...
T Consensus 151 ~~~~~~~a~~is~~lgl~Gp~~~v~taCsS~l~Al~~A~~~I~~G~~d~aLvgG~e~~~~p~~~~~~~~~~~ls~~-~~~ 229 (427)
T 3ho9_A 151 STIVNMVAGHLTIMYGLRGPSISIATAATSGVHNIGHAARIIAYGDADVMVAGGAEKASTPLGVGGFGAARALSTR-NDN 229 (427)
T ss_dssp HHSTTHHHHHHHHHHTCCSCEECCCCGGGHHHHHHHHHHHHHHHTSCSEEEEEEEECCCSHHHHHHHHHTTCBCCC-TTC
T ss_pred cccchHHHHHHHHHhCCCCCeecccchhHHHHHHHHHHHHHHHcCCCCEEEEeeecccCCHHHHHHHHhccCcccC-CCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999888754 333
Q ss_pred CCCCCcCccCCCCceeeccceEEEEEccchHHHhcCCeEEEEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHHcCCCC
Q 011989 273 PQEASRPFDCGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQS 352 (473)
Q Consensus 273 ~~~~~~pfd~~~~G~~~geGaaavvL~~~~~A~~~g~~~~a~i~g~~~~~d~~~~~~~~~~~~~~~~a~~~al~~agl~~ 352 (473)
++..|+|||.+++|+++|||+++|||++++.|+++|.++|++|.|++.++|+.+.+.|.+...++.++++++|+++|+++
T Consensus 230 ~~~~~~pfd~~~~G~v~geGAaavvL~~~~~A~~~g~~i~a~i~g~~~~~dg~~~~~p~~~~~~~~~ai~~al~~Agl~~ 309 (427)
T 3ho9_A 230 PQAASRPWDKERDGFVLGDGAGMLVLEEYEHAKKRGAKIYAELVGFGMSSDAYHMTSPPENGAGAALAMANALRDAGIEA 309 (427)
T ss_dssp HHHHCCTTBTTCCSBCBBCEEEEEEEEEHHHHHHTTCCCCEEEEEEEEEECCSBTTBCCTTCHHHHHHHHHHHHHHTCCG
T ss_pred CCcccCCccCCCCCceeeeeEEEEEEccHHHHHHCCCcEEEEEEEEeecCCCCCcCCCCCCHHHHHHHHHHHHHHcCCCH
Confidence 55689999999999999999999999999999999999999999999999999999888888999999999999999999
Q ss_pred CCccEEEEcCCCCCCCCHHHHHHHHHHhhcccCCCCceeeccccchhhhHHhHHHHHHHHHHHHHHhCccCCCCCCCCCC
Q 011989 353 HQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLAIHHGVAPLTLNLAKPD 432 (473)
Q Consensus 353 ~dId~v~~hgtgt~~~D~~E~~a~~~~~~~~~~~~~~~v~s~k~~~Gh~~~AsG~~~li~~~~~l~~~~ipp~~~~~~~~ 432 (473)
+||||||+|||||+.+|.+|..++.++|+... .++++++.|.++||+++|||++++++++++|++++|||++|+++|+
T Consensus 310 ~dId~ve~HgtgT~~~d~~e~~a~~~~~g~~~--~~~~v~s~k~~~GH~~gAsG~~~~i~~~~~l~~~~ipp~~~~~~~~ 387 (427)
T 3ho9_A 310 SQIGYVNAHGTSTPAGDKAEAQAVKTIFGEAA--SRVLVSSTKSMTGHLLGAAGAVESIYSILALRDQAVPPTINLDNPD 387 (427)
T ss_dssp GGCCEEECCCCSCHHHHHHHHHHHHHHHGGGG--GTSEEECTHHHHCBCGGGHHHHHHHHHHHHHHHTEECCBTTCSSBC
T ss_pred HHccEEEecCCcCCCcCHHHHHHHHHHhcccC--CCeEEecchHhhccCHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCC
Confidence 99999999999999999999999999998643 4689999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCccccCCCC-CCcEEEEeccccccceeeEEEeec
Q 011989 433 PIFNDNFMPLTASKDM-PISAALSNSFGFGGTNASLLFTKC 472 (473)
Q Consensus 433 ~~~~~~~~~~~~~~~~-~~~~~l~~s~g~gG~~~~~vl~~~ 472 (473)
|.+++++++ .+.+.. +.+++++|||||||+|+|+||++|
T Consensus 388 ~~~~~~~~~-~~~~~~~~~~~a~~~sfGfgG~na~~vl~~~ 427 (427)
T 3ho9_A 388 EGCDLDFVP-HEARQVSGMEYTLCNSFGFGGTNGSLIFKKI 427 (427)
T ss_dssp TTCCCBCCB-SSCEECSSCCEEEEEEEETTTEEEEEEEECC
T ss_pred CCCCccccc-cccccCCCCCEEEEeCccCCceeEEEEEEeC
Confidence 999999988 555555 789999999999999999999986
|
| >4ewg_A Beta-ketoacyl synthase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, transferase; 2.25A {Burkholderia phymatum} | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-77 Score=607.36 Aligned_cols=406 Identities=34% Similarity=0.532 Sum_probs=377.0
Q ss_pred CCceEEEecceecccCCCHHHHHHHHHcCCCceeeCCccccccCCCCccccccccCCcccceeEEecCCCCCCCCCcccC
Q 011989 38 LRRVVVTGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSKVAAVVPCGISSGEFNEDSW 117 (473)
Q Consensus 38 ~~~v~ItG~g~~~p~g~~~~~~~~~l~~G~s~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~~~~ 117 (473)
|++|+|||||+++|.|.+.++||++|++|++++++++.+++. ..++.++++.+++ ||+.+|
T Consensus 5 m~~v~ItG~g~~~p~g~~~~~~w~~l~~g~~~i~~~~~~~~~-------------~~~~~~~~~~v~~------fd~~~~ 65 (412)
T 4ewg_A 5 MKRVVITGMGGVTALGSRWDEIEAALKAGRNAVRRMPDWDYF-------------ESLHTRLAAPLPG------FAQPAD 65 (412)
T ss_dssp CCCEEEEEEEEEBTTBSSHHHHHHHHHHTCCCCEECGGGGGS-------------SSCCCCEEBCCSC------CCCCTT
T ss_pred CCEEEEEeeEEECCCcCCHHHHHHHHHcCCCceeeCCccccc-------------cCCccceeeecCC------CChhhh
Confidence 578999999999999999999999999999999999875521 1355667777776 999999
Q ss_pred CCchhhhccCHHHHHHHHHHHHHHHHcCC-CCCCCCCCCceeEEEecCCCChhhHHHHHHHHHHhccccCCCcchhhhhh
Q 011989 118 LNSKDHRSIARFIAYALCAADEALHDAKW-LPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILI 196 (473)
Q Consensus 118 ~~~~~~~~~~~~~~la~~aa~~Al~dAgl-~~~~~~~~~~~gvivg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (473)
+++++.+.|+++++|+++|+++||+|||+ ++.++ +..+++|++|++.+++...++++..+...+...++|+.++..+.
T Consensus 66 i~~~~~~~~d~~~~l~l~aa~~Al~dAGl~~~~~i-~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (412)
T 4ewg_A 66 WPRKKTRSMGRVSMYAVRASELALADAGFAGDESI-SDGRMGVAYGSSSGSVEPIRAFGTMLESGSMTDVTSNSYVQMMP 144 (412)
T ss_dssp SCHHHHTTCCHHHHHHHHHHHHHHHHHTCTTCGGG-GTTTEEEEEECSCCCHHHHHHHHHHHHHCCCTTCCTTHHHHHST
T ss_pred CCHHHHhhCCHHHHHHHHHHHHHHHhcCCCCcccc-CccceEEEEeccCCchHHHHHHHHHHHhcCcccCChhhhhhhcc
Confidence 99999999999999999999999999999 66666 48899999999999999999999999888999999999999999
Q ss_pred hHHHHHHHHhcCCCCCeeeecCCcchHHHHHHHHHHHHHcCCCCEEEEeecCCCcChHHHHHHhhhhccccccCCCCCCC
Q 011989 197 NMASGHVSMKYGFQGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEA 276 (473)
Q Consensus 197 ~~~a~~ia~~lgl~Gp~~~v~~acasg~~Al~~A~~~I~~G~~d~vlv~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (473)
+.++++|++.||++||+++|+++|+|++.||.+|+++|++|++|++||+|+|. +++.....|...+.++.. ...|+..
T Consensus 145 ~~~a~~ia~~lgl~gp~~~v~~aCsS~l~Al~~A~~~I~~G~~d~~LvgG~e~-~s~~~~~~~~~~~~l~~~-~~~p~~~ 222 (412)
T 4ewg_A 145 HTTAVNVSLFWDLKGRIVPTSSACASGSQAIGYAYENIAMGKQTLMLAGGAEE-LSGPAVAVFDTLYATSTR-NDEPHLT 222 (412)
T ss_dssp THHHHHHHHHTTCCSCEEECCCGGGHHHHHHHHHHHHHHTTSCSEEEEEEEEC-CCHHHHHHHHTTTCBCCC-TTCGGGC
T ss_pred cHHHHHHHHHhCCCCCcccccchhHHHHHHHHHHHHHHHcCCCCEEEEecccc-CCHHHHHHHHHhhccccC-CCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999 788888889888888754 4556789
Q ss_pred CcCccCCCCceeeccceEEEEEccchHHHhcCCeEEEEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCcc
Q 011989 277 SRPFDCGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVD 356 (473)
Q Consensus 277 ~~pfd~~~~G~~~geGaaavvL~~~~~A~~~g~~~~a~i~g~~~~~d~~~~~~~~~~~~~~~~a~~~al~~agl~~~dId 356 (473)
|+|||.+++|+++|||+++|||+++++|+++|.++|++|.|++.++|+.+++.| ...++.++++++|+++|++++|||
T Consensus 223 ~rpfd~~~~G~~~geGAaavvL~~~~~A~~~g~~i~a~i~g~~~~~dg~~~~~p--~~~~~~~ai~~Al~~Agl~~~dId 300 (412)
T 4ewg_A 223 PRPFDAKRDGLVVGEGAATLVLEEYEHAKARGATIHAEIVGFGCNSDGAHMTQP--TASTMARAMQLALEDAKLDANAIA 300 (412)
T ss_dssp CCTTBTTCCCBCBBCEEEEEEEEEHHHHHHTTCCCCEEEEEEEEEECSSCSSSC--CHHHHHHHHHHHHHHTTCCGGGEE
T ss_pred CCCCCCCCCCCceECeEEEEEEccHHHHhhCCCcEEEEEEEEEEcCCCCCCCCC--CHHHHHHHHHHHHHHcCCCHHHCC
Confidence 999999999999999999999999999999999999999999999999998887 477889999999999999999999
Q ss_pred EEEEcCCCCCCCCHHHHHHHHHHhhcccCCCCceeeccccchhhhHHhHHHHHHHHHHHHHHhCccCCCCCCCCCCCCC-
Q 011989 357 YVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLAIHHGVAPLTLNLAKPDPIF- 435 (473)
Q Consensus 357 ~v~~hgtgt~~~D~~E~~a~~~~~~~~~~~~~~~v~s~k~~~Gh~~~AsG~~~li~~~~~l~~~~ipp~~~~~~~~~~~- 435 (473)
|||+|||||+.+|.+|..++.++|+.. ++|+++|+++||+++|+|++++++++++|++++|||++|+++|+|.+
T Consensus 301 ~ve~Hgtgt~~~D~~E~~al~~~~~~~-----~~v~s~K~~~GH~~gAsG~~~~~~~~~~l~~~~ipp~~~~~~~~p~~~ 375 (412)
T 4ewg_A 301 YVNAHGTSTDRGDVAESQATARTFGER-----MPISSLKSYVGHTLGACGALEAWWTIEMMKRNWYAPTLNLTEVDPACA 375 (412)
T ss_dssp EEECCCCCCHHHHHHHHHHHHHHHCTT-----CEEECTHHHHCBCGGGHHHHHHHHHHHHHHHTEECCCTTCCSBCTTSC
T ss_pred EEEccCCCCccccHHHHHHHHHHcCCC-----CeeeCccccccccHHHHHHHHHHHHHHHHhcCCcCCCCCCCCCCCccc
Confidence 999999999999999999999999753 89999999999999999999999999999999999999999999999
Q ss_pred CCCCCccccCCCCCCcEEEEeccccccceeeEEEeecC
Q 011989 436 NDNFMPLTASKDMPISAALSNSFGFGGTNASLLFTKCQ 473 (473)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~l~~s~g~gG~~~~~vl~~~~ 473 (473)
++++++ .+.+..+++++++|||||||+|+|+||++|+
T Consensus 376 ~~~~v~-~~~~~~~~~~~~~~sfgfGG~na~~vl~~~~ 412 (412)
T 4ewg_A 376 PLDYIR-GEARAIDAEYVMSNNFAFGGINTSLIFRRVR 412 (412)
T ss_dssp CCEECC-SSCEECCCSEEEEEEEEGGGEEEEEEEECCC
T ss_pred cccccc-CcccCCCCCEEEEeeecCCcceEEEEEeeCC
Confidence 888887 6667778999999999999999999999985
|
| >2gqd_A 3-oxoacyl-[acyl-carrier-protein] synthase 2; duplicated babababb fold, transferase; 2.30A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-76 Score=606.59 Aligned_cols=413 Identities=45% Similarity=0.769 Sum_probs=379.4
Q ss_pred CCCCCceEEEecceecccCCCHHHHHHHHHcCCCceeeCCccccccCCCCccccccccCCcccceeEEecCCCCCCCCCc
Q 011989 35 LSPLRRVVVTGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSKVAAVVPCGISSGEFNE 114 (473)
Q Consensus 35 ~~~~~~v~ItG~g~~~p~g~~~~~~~~~l~~G~s~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~ 114 (473)
|.++++|+|||||+++|.|.++++||++|++|++++++++.++ ...++.++++++++ ||+
T Consensus 24 m~~~~~vaI~G~g~~~P~g~~~~~~w~~l~~g~~~i~~~~~~~--------------~~~~~~~~~~~i~~------fd~ 83 (437)
T 2gqd_A 24 MSQNKRVVITGMGALSPIGNDVKTTWENALKGVNGIDKITRID--------------TEPYSVHLAGELKN------FNI 83 (437)
T ss_dssp ---CCCEEEEEEEEEBTTBSSHHHHHHHHHTTCCCEEECCSSC--------------CTTSSCCEEECCSS------CCG
T ss_pred ccCCCCEEEEEeeEECCCCCCHHHHHHHHHcCCCceeeCCccc--------------cccCccceeEEeCC------CCh
Confidence 4445899999999999999999999999999999999997643 23455667787775 998
Q ss_pred ccCCCchhhhccCHHHHHHHHHHHHHHHHcCCCCCCCCCCCceeEEEecCCCChhhHHHHHHHHHHhccccCCCcchhhh
Q 011989 115 DSWLNSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRI 194 (473)
Q Consensus 115 ~~~~~~~~~~~~~~~~~la~~aa~~Al~dAgl~~~~~~~~~~~gvivg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (473)
.+++++++.+.|||+++|+++|+++||+|||++++++ +.++++|++|++.++.......+..+..++...++|+.+++.
T Consensus 84 ~~~~~~~~~~~~d~~~~l~l~aa~~AL~dAGl~~~~i-~~~~~gv~vg~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 162 (437)
T 2gqd_A 84 EDHIDKKEARRMDRFTQYAIVAAREAVKDAQLDINEN-TADRIGVWIGSGIGGMETFEIAHKQLMDKGPRRVSPFFVPML 162 (437)
T ss_dssp GGTSCSTTTTTSCHHHHHHHHHHHHHHHHHTCCCCTT-TGGGEEEEEECSSCCHHHHHHHHHHHHHHCGGGSCTTHHHHH
T ss_pred hcCCCHHHHHhcCHHHHHHHHHHHHHHHHcCCCcccc-CCcceEEEEeecCCcHHHHHHHHHHHHhcCcccCChHHhhhc
Confidence 8889999999999999999999999999999998877 488999999999999888888888787888888999999999
Q ss_pred hhhHHHHHHHHhcCCCCCeeeecCCcchHHHHHHHHHHHHHcCCCCEEEEeecCCCcChHHHHHHhhhhccccccCCCCC
Q 011989 195 LINMASGHVSMKYGFQGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQ 274 (473)
Q Consensus 195 ~~~~~a~~ia~~lgl~Gp~~~v~~acasg~~Al~~A~~~I~~G~~d~vlv~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (473)
..+.++++|++.||++||+++|+++|+|++.||.+|+++|++|++|+|||+|+|.++++..+..|..++.++. +..|+
T Consensus 163 ~~~~~a~~ia~~lgl~gp~~~v~~aCsS~l~Al~~A~~~I~~G~~d~aLvgG~e~~~~~~~~~~~~~~~~ls~--~~~p~ 240 (437)
T 2gqd_A 163 IPDMATGQVSIDLGAKGPNGATVTACATGTNSIGEAFKIVQRGDADAMITGGTEAPITHMAIAGFSASRALST--NDDIE 240 (437)
T ss_dssp STTHHHHHHHHHHTCCSSEECBCCGGGHHHHHHHHHHHHHHTTSCSEEEEEEEECCCSHHHHHHHHHTTCBCC--CCCTT
T ss_pred chhHHHHHHHHHhCCCCceEEecCCccHHHHHHHHHHHHHHcCCCCEEEEeeeccccCHHHHHHHHhccCccC--CCCCc
Confidence 9999999999999999999999999999999999999999999999999999999889988888988888875 23467
Q ss_pred CCCcCccCCCCceeeccceEEEEEccchHHHhcCCeEEEEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCC
Q 011989 275 EASRPFDCGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQ 354 (473)
Q Consensus 275 ~~~~pfd~~~~G~~~geGaaavvL~~~~~A~~~g~~~~a~i~g~~~~~d~~~~~~~~~~~~~~~~a~~~al~~agl~~~d 354 (473)
..|+|||.+++|+++|||++++||++++.|+++|++++++|.|++.++|+.+++.|++.+.++.++++++|+++|++|+|
T Consensus 241 ~~~~pfd~~~~G~v~geGaaavvL~~~~~A~~~g~~i~a~I~g~~~~~dg~~~~~p~~~~~~~~~ai~~Al~~Agl~p~d 320 (437)
T 2gqd_A 241 TACRPFQEGRDGFVMGEGAGILVIESLESAQARGANIYAEIVGYGTTGDAYHITAPAPEGEGGSRAMQAAMDDAGIEPKD 320 (437)
T ss_dssp TSSCTTCTTCCSBCBBCEEEEEEEEEHHHHHHHTCCCCEEEEEEEEEECCSCSSSCCGGGHHHHHHHHHHHHHHTCCGGG
T ss_pred cccCCCCCCCCCceeeceEEEEEECcHHHHHhCCCceEEEEEEEEecCCCCCCCCCCCCHHHHHHHHHHHHHHcCCCHhh
Confidence 89999999999999999999999999999999999999999999999999998888888889999999999999999999
Q ss_pred ccEEEEcCCCCCCCCHHHHHHHHHHhhcccCCCCceeeccccchhhhHHhHHHHHHHHHHHHHHhCccCCCCCCCCCCCC
Q 011989 355 VDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLAIHHGVAPLTLNLAKPDPI 434 (473)
Q Consensus 355 Id~v~~hgtgt~~~D~~E~~a~~~~~~~~~~~~~~~v~s~k~~~Gh~~~AsG~~~li~~~~~l~~~~ipp~~~~~~~~~~ 434 (473)
||||++|+|||+.+|.+|.+++.++|+... .+++|+++|+++||+++|+|++++++++++|+++++||++|+++|+|.
T Consensus 321 Id~ve~HgtgT~~~D~~E~~al~~~fg~~~--~~~~v~s~k~~~GH~~gAaG~~~li~~~l~l~~~~ipp~~~~~~~~p~ 398 (437)
T 2gqd_A 321 VQYLNAHGTSTPVGDLNEVKAIKNTFGEAA--KHLKVSSTKSMTGHLLGATGGIEAIFSALSIKDSKVAPTIHAVTPDPE 398 (437)
T ss_dssp CCEEECCCCSCHHHHHHHHHHHHHHHGGGG--TSCEEECTHHHHCBCGGGHHHHHHHHHHHHHHHTEECCBTTCCSCCSS
T ss_pred CCEEEEECCCCcCcCHHHHHHHHHHHhccC--CCceeecchhhhcCChhhhhHHHHHHHHHHHhcCCCCCCCCCCCCCCC
Confidence 999999999999999999999999998642 468999999999999999999999999999999999999999999999
Q ss_pred CCCCCCccccCCCCCCcEEEEeccccccceeeEEEeecC
Q 011989 435 FNDNFMPLTASKDMPISAALSNSFGFGGTNASLLFTKCQ 473 (473)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~l~~s~g~gG~~~~~vl~~~~ 473 (473)
+++++++ .+.+..+++++++|||||||+|+|+||++|+
T Consensus 399 ~~~~~v~-~~~~~~~~~~a~~~sfGfGG~na~~vl~~~~ 436 (437)
T 2gqd_A 399 CDLDIVP-NEAQDLDITYAMSNSLGFGGHNAVLVFKKFE 436 (437)
T ss_dssp CCSBCCB-SSCEECCCSEEEEEEECGGGEEEEEEEECCC
T ss_pred CCcccCC-CccccCCCCEEEEccCcCCCeeEEEEEEecc
Confidence 9999988 5666778999999999999999999999985
|
| >3kzu_A 3-oxoacyl-(acyl-carrier-protein) synthase II; seattle structural genomics center for infectious disease, ssgcid, acyltransferase; 1.75A {Brucella melitensis} PDB: 3e60_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-77 Score=606.50 Aligned_cols=418 Identities=54% Similarity=0.901 Sum_probs=386.2
Q ss_pred CCCceEEEecceecccCCCHHHHHHHHHcCCCceeeCCccccccCCCCccccccccCCcccceeEEecCC-CCCCCCCcc
Q 011989 37 PLRRVVVTGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSKVAAVVPCG-ISSGEFNED 115 (473)
Q Consensus 37 ~~~~v~ItG~g~~~p~g~~~~~~~~~l~~G~s~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~fd~~ 115 (473)
.|++|||||||+++|+|.++++||++|++|+++|++++.++ ...++.++++.++.. .....||+.
T Consensus 8 ~~~~~viTG~G~vsp~g~~~~~~w~~L~~G~s~i~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~fd~~ 73 (428)
T 3kzu_A 8 HMRRVVITGLGLVSPLASGVEETWKRLLAGESGARRVTEFE--------------VDDLACQIACRIPVGDGTNGTFNPD 73 (428)
T ss_dssp -CCCEEEEEEEEECSSCBSHHHHHHHHHTTCCCEEECCSSC--------------CTTSSCCEEECCCBSSSSTTCBCGG
T ss_pred cccceEEEeceEECCCcCCHHHHHHHHHcCCCeeeeCCccc--------------cccCcCceeeEecccccccccCChh
Confidence 36899999999999999999999999999999999998765 234456677777621 123459999
Q ss_pred cCCCchhhhccCHHHHHHHHHHHHHHHHcCCCCCC-CCCCCceeEEEecCCCChhhHHHHHHHHHHhccccCCCcchhhh
Q 011989 116 SWLNSKDHRSIARFIAYALCAADEALHDAKWLPSD-QGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRI 194 (473)
Q Consensus 116 ~~~~~~~~~~~~~~~~la~~aa~~Al~dAgl~~~~-~~~~~~~gvivg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (473)
+|+++++.+.|||+++|+++|+++||+|||+++.+ + +..+++|++|++.+.......++..+...+...++|+.+++.
T Consensus 74 ~~i~~~~~~~~d~~~~l~l~aa~~AL~dAGl~~~~~i-d~~~~gv~vg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (428)
T 3kzu_A 74 LHMDPKEQRKVDPFIVYAVGAADQALDDAGWHPENDE-DQVRTGVLIGSGIGGIEGIVEAGYTLRDKGPRRISPFFIPGR 152 (428)
T ss_dssp GTSCHHHHTTSCHHHHHHHHHHHHHHHHHTCCCCSHH-HHHTEEEEEECSSCSHHHHHHHHHHHHHTCGGGSCTTTTTTT
T ss_pred hcCCHHHHHhCCHHHHHHHHHHHHHHHhcCCChhhhc-cccceEEEEcccCCcchhHHHHHHHHHhcCccccCchhcccc
Confidence 99999999999999999999999999999998876 5 467899999999999999999988888888999999999999
Q ss_pred hhhHHHHHHHHhcCCCCCeeeecCCcchHHHHHHHHHHHHHcCCCCEEEEeecCCCcChHHHHHHhhhhccccccCCCCC
Q 011989 195 LINMASGHVSMKYGFQGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQ 274 (473)
Q Consensus 195 ~~~~~a~~ia~~lgl~Gp~~~v~~acasg~~Al~~A~~~I~~G~~d~vlv~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (473)
..+.++++|++.||++||+++|+++|+|++.||.+|+++|++|++|+|||+|+|.+.++..+..+...+.++......+.
T Consensus 153 ~~~~~a~~is~~lgl~Gp~~~v~taCsS~l~Al~~A~~~I~~G~~d~aLvgG~e~~~~~~~~~~~~~~~~ls~~~~~~~~ 232 (428)
T 3kzu_A 153 LINLASGHVSIKHKLRGPNHSVVTACATGTHAIGDAARLIAFGDADVMVAGGTESPVSRISLAGFAACKALSTERNDDPT 232 (428)
T ss_dssp CTTHHHHHHHHHHTCCSCEECBCCGGGHHHHHHHHHHHHHHTTSCSEEEEEEEECCCSHHHHHHHHHTTCBCCSCTTSGG
T ss_pred hhhhHHHHHHHHcCCCCceeeecCccHHHHHHHHHHHHHHHCCCCCEEEEeeecCcCCHHHHHHHHHccccccCccCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999876566677
Q ss_pred CCCcCccCCCCceeeccceEEEEEccchHHHhcCCeEEEEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCC
Q 011989 275 EASRPFDCGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQ 354 (473)
Q Consensus 275 ~~~~pfd~~~~G~~~geGaaavvL~~~~~A~~~g~~~~a~i~g~~~~~d~~~~~~~~~~~~~~~~a~~~al~~agl~~~d 354 (473)
..++|||.+++|+++||||+++||++++.|+++|.+++++|.|++.++|+.+.+.|.+...++.++++++|+++|++++|
T Consensus 233 ~~~~pfd~~~~G~v~gdGAaavvL~~~~~A~~~g~~i~a~i~g~~~~~dg~~~~~p~~~~~~~~~ai~~al~~Agl~~~d 312 (428)
T 3kzu_A 233 AASRPYDEDRDGFVMGEGAGIVVLEELEHALARGAKIYAEVIGYGMSGDAFHITAPTESGEGAQRCMVAALKRAGIVPDE 312 (428)
T ss_dssp GTCCTTBTTCCSBCBBCEEEEEEEEEHHHHHHHTCCCCEEEEEEEEEECCSCSSSCCTTCHHHHHHHHHHHHHHTCCGGG
T ss_pred cccCCcccCCCceeecCceEEEEEccHHHHHhCCCceEEEEEEEEEccCCCCCCCCCCCHHHHHHHHHHHHHHcCCCHHH
Confidence 89999999999999999999999999999999999999999999999999999999888889999999999999999999
Q ss_pred ccEEEEcCCCCCCCCHHHHHHHHHHhhcccCCCCceeeccccchhhhHHhHHHHHHHHHHHHHHhCccCCCCCCCCCCCC
Q 011989 355 VDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLAIHHGVAPLTLNLAKPDPI 434 (473)
Q Consensus 355 Id~v~~hgtgt~~~D~~E~~a~~~~~~~~~~~~~~~v~s~k~~~Gh~~~AsG~~~li~~~~~l~~~~ipp~~~~~~~~~~ 434 (473)
|||||+||||| .+|.+|..++.+.|+... .++++++.|.++||+++|+|++++++++++|++++|||++|+++|+|.
T Consensus 313 Id~ve~HgtgT-~~d~~e~~al~~~~g~~~--~~~~v~s~k~~~GH~~gAsG~~~~i~~~~~l~~~~ipp~~~~~~~~~~ 389 (428)
T 3kzu_A 313 IDYINAHGTST-MADTIELGAVERVVGEAA--AKISMSSTKSSIGHLLGAAGAAEAVFSTLAIRDNIAPATLNLDNPAAQ 389 (428)
T ss_dssp CCEEECCCCSS-TTHHHHHHHHHHHHGGGG--GGCEEECTHHHHCBCGGGHHHHHHHHHHHHHHHTEECCBTTCSSBSSC
T ss_pred eeEEEecCCcc-hhhHHHHHHHHHHhccCC--CceeeCCchhhhCCCchhhHHHHHHHHHHHhccCccCCCCCCCCCCCC
Confidence 99999999999 999999999999998653 468999999999999999999999999999999999999999999999
Q ss_pred CCCCCCccccCCCCCCcEEEEeccccccceeeEEEeecC
Q 011989 435 FNDNFMPLTASKDMPISAALSNSFGFGGTNASLLFTKCQ 473 (473)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~l~~s~g~gG~~~~~vl~~~~ 473 (473)
+++++++ ...+..+++++++|||||||+|+|+||++|+
T Consensus 390 ~~~~~~~-~~~~~~~~~~a~~~sfGfgG~na~~vl~~~~ 427 (428)
T 3kzu_A 390 TRIDLVP-HKPRERKIDVALSNSFGFGGTNASLVLRRYT 427 (428)
T ss_dssp CSSBCCB-SSCEECCCSEEEEEEEETTTEEEEEEEECCC
T ss_pred CCcccCC-CCCcCCCCCEEEEeCcccChhhEEEEEeecC
Confidence 9999998 6667778999999999999999999999985
|
| >2ix4_A 3-oxoacyl-[acyl-carrier-protein] synthase; beta-ketoacyl-(acyl carrier protein) synthase, lipid metabol condensing enzyme; 1.95A {Arabidopsis thaliana} SCOP: c.95.1.1 c.95.1.1 PDB: 1w0i_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-77 Score=608.34 Aligned_cols=429 Identities=78% Similarity=1.220 Sum_probs=386.0
Q ss_pred CceEEEecceecccCCCHHHHHHHHHcCCCceeeCCccccccCCCCccccccccCCcccceeEEecCCCCCCCCCcccCC
Q 011989 39 RRVVVTGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSKVAAVVPCGISSGEFNEDSWL 118 (473)
Q Consensus 39 ~~v~ItG~g~~~p~g~~~~~~~~~l~~G~s~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~~~~~ 118 (473)
++|+|||||+++|+|.++++||++|++|++++++++.+++....|+++........++.++++++++..+...||+.+|+
T Consensus 1 ~~vaI~G~g~~~p~g~~~~~~w~~l~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~fd~~~~~ 80 (431)
T 2ix4_A 1 RRVVVTGLGMVTPLGRGVETTWRRLIDGECGIRGLTLDDLKMKSFDEETKLYTFDQLSSKVAAFVPYGSNPGEFDEALWL 80 (431)
T ss_dssp CCEEEEEEEEEETTEESHHHHHHHHHTTCCCEEECCGGGGCCTTSCHHHHHHHHHTCSCCEEECCCBSSSTTSBCHHHHS
T ss_pred CcEEEEeeeEECCCCCCHHHHHHHHHcCCCeeeeCChhhhhccccccccccccccCcccceeEEeccccccccCChhhcC
Confidence 37999999999999999999999999999999999876654445554433222345677888988732224459988888
Q ss_pred CchhhhccCHHHHHHHHHHHHHHHHcCC-CCCCCCCCCceeEEEecCCCChhhHHHHHHHHHHhccccCCCcchhhhhhh
Q 011989 119 NSKDHRSIARFIAYALCAADEALHDAKW-LPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILIN 197 (473)
Q Consensus 119 ~~~~~~~~~~~~~la~~aa~~Al~dAgl-~~~~~~~~~~~gvivg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (473)
+++ .|||+++|+++|+++||+|||+ ++.++ +.++++|++|++.++......++..+...+.+.++|+.+++.+.+
T Consensus 81 ~~~---~~d~~~~l~l~aa~~AL~dAG~~~~~~i-~~~~~gv~vg~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 156 (431)
T 2ix4_A 81 NSK---AVANFIGYAVCAADEALRDAEWLPTEEE-EKERTGVSIGGGIGSICDIVEAAQLICEKRLRRLSPFFIPKILVN 156 (431)
T ss_dssp CST---TCCHHHHHHHHHHHHHHHHTTCCCCSHH-HHHTEEEEEEESSCCHHHHHHHHHHHHTTCGGGCCTTHHHHHCTT
T ss_pred Chh---hCCHHHHHHHHHHHHHHHHcCCCCcccc-CCCCEEEEEeeccccHHHHHHHHHHHHhcCcccCChhhhhcchhH
Confidence 776 8999999999999999999999 77665 367899999999999888888888777778888999999999999
Q ss_pred HHHHHHHHhcCCCCCeeeecCCcchHHHHHHHHHHHHHcCCCCEEEEeecCCCcChHHHHHHhhhhccccccCCCCCCCC
Q 011989 198 MASGHVSMKYGFQGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEAS 277 (473)
Q Consensus 198 ~~a~~ia~~lgl~Gp~~~v~~acasg~~Al~~A~~~I~~G~~d~vlv~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (473)
.++++|++.||++||+++|+++|+|++.||.+|+++|++|++|++||+|+|.++++..+..+...+.++.+++..++..|
T Consensus 157 ~~a~~ia~~lgl~gp~~~v~taCsS~l~Al~~A~~~I~~G~~d~aLvgG~e~~~~~~~~~~~~~~~~ls~~~~~~~~~~~ 236 (431)
T 2ix4_A 157 MASGHVSMKYGFQGPNHAAVTACATGAHSIGDATRMIQFGDADVMVAGGTESSIDALSVAGFSRSRALSTKFNSSPQEAS 236 (431)
T ss_dssp HHHHHHHHHHTCCSCEECBCCGGGHHHHHHHHHHHHHHHTSCSEEEEEEEECCCSHHHHHHHHHTTCBCCTTTTCGGGSC
T ss_pred HHHHHHHHHHCCCCceeCccChhHHHHHHHHHHHHHHHcCCCCEEEEeeeccccCHHHHHHHHhccccCccccCCccccc
Confidence 99999999999999999999999999999999999999999999999999999999888889888988877777788899
Q ss_pred cCccCCCCceeeccceEEEEEccchHHHhcCCeEEEEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccE
Q 011989 278 RPFDCGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDY 357 (473)
Q Consensus 278 ~pfd~~~~G~~~geGaaavvL~~~~~A~~~g~~~~a~i~g~~~~~d~~~~~~~~~~~~~~~~a~~~al~~agl~~~dId~ 357 (473)
+|||.+++|+++|||++++||++++.|+++|.+++++|.|++.++|+.+++.|++...++.++++++|+++|++++||||
T Consensus 237 ~pfd~~~~g~~~gdGAaavvL~~~~~A~~~g~~i~a~i~g~~~~~dg~~~~~p~~~~~~~~~ai~~al~~agl~~~dId~ 316 (431)
T 2ix4_A 237 RPFDCDRDGFVIGEGSGVIVLEEYEHAKRRGAKIYAELCGYGMSGDAHHITQPPEDGKGAVLAMTRALRQSGLCPNQIDY 316 (431)
T ss_dssp CTTBTTCCSBCBBCEEEEEEEEEHHHHHHTTCCCCEEEEEEEEEECCSCSSCCCTTCHHHHHHHHHHHHHHTCCGGGCCE
T ss_pred ccCCCCCCCceeecceEEEEEccHHHHHhCCCceEEEEeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHHcCCCHHHcCE
Confidence 99999999999999999999999999999999999999999999999998888878888999999999999999999999
Q ss_pred EEEcCCCCCCCCHHHHHHHHHHhhcccCCCCceeeccccchhhhHHhHHHHHHHHHHHHHHhCccCCCCCCCCCCCCCCC
Q 011989 358 VNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLAIHHGVAPLTLNLAKPDPIFND 437 (473)
Q Consensus 358 v~~hgtgt~~~D~~E~~a~~~~~~~~~~~~~~~v~s~k~~~Gh~~~AsG~~~li~~~~~l~~~~ipp~~~~~~~~~~~~~ 437 (473)
|++|||||+.+|.+|.+++..+|+......++++++.|+++||+++|+|++++++++++|++++|||++|+++|+|.+++
T Consensus 317 ve~HgtgT~~~D~~E~~al~~~~~~~~~~~~~~v~s~k~~~GH~~gAsG~~~li~~~l~l~~~~ipp~~~~~~~~p~~~~ 396 (431)
T 2ix4_A 317 VNAHATSTPIGDAVEARAIKTVFSEHATSGTLAFSSTKGATGHLLGAAGAVEAIFSILAIHHGVAPMTLNVKNPDPIFDK 396 (431)
T ss_dssp EECCCCSCHHHHHHHHHHHHHHHTHHHHTSCSEEECTHHHHCBCGGGHHHHHHHHHHHHHHHTEECCCTTCSSBCTTCCS
T ss_pred EEEeCCcCcccCHHHHHHHHHHHcccccCCCceeecchhhhcccHHHHHHHHHHHHHHHHhcCCcCCCCCCCCCCCCCCc
Confidence 99999999999999999999999864333578999999999999999999999999999999999999999999999999
Q ss_pred CCCccccCCCC-CCcEEEEeccccccceeeEEEeec
Q 011989 438 NFMPLTASKDM-PISAALSNSFGFGGTNASLLFTKC 472 (473)
Q Consensus 438 ~~~~~~~~~~~-~~~~~l~~s~g~gG~~~~~vl~~~ 472 (473)
++++ .+.+.. +++++++|||||||+|+|+||++|
T Consensus 397 ~~v~-~~~~~~~~~~~a~~~sfGfGG~na~~il~~~ 431 (431)
T 2ix4_A 397 RFMP-LTTSKKMLVRTAMSNSFGFGGTNASLLFASI 431 (431)
T ss_dssp SSCC-CSSCEECCCSEEEEEEEETTTEEEEEEEECC
T ss_pred ccCC-ccccccCCCCEEEEecccCCCeeEEEEEeeC
Confidence 9988 555555 789999999999999999999986
|
| >2iwz_A 3-oxoacyl-[acyl-carrier-protein] synthase; mitochondria, mitochondrion, lipid synthesis, fatty acid SYN fatty acid biosynthesis; 1.65A {Homo sapiens} PDB: 2iwy_A 2c9h_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-76 Score=604.29 Aligned_cols=415 Identities=52% Similarity=0.840 Sum_probs=378.2
Q ss_pred CCceEEEecceecccCCCHHHHHHHHHcCCCceeeCCccccccCCCCccccccccCCcccceeEEecCCCCCCCCCcccC
Q 011989 38 LRRVVVTGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSKVAAVVPCGISSGEFNEDSW 117 (473)
Q Consensus 38 ~~~v~ItG~g~~~p~g~~~~~~~~~l~~G~s~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~~~~ 117 (473)
.++|+|||||+++|+|.++++||++|++|++++++++.++ ...++.++++++++..+...||+.+|
T Consensus 20 ~~~v~ItG~g~~~p~g~~~~~~w~~l~~g~~~i~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~fd~~~~ 85 (438)
T 2iwz_A 20 HRRVVITGIGLVTPLGVGTHLVWDRLIGGESGIVSLVGEE--------------YKSIPCSVAAYVPRGSDEGQFNEQNF 85 (438)
T ss_dssp ECCEEEEEEEEEETTEESHHHHHHHHHTTCCCEEECCSGG--------------GTTSSCCEEECCCBSSSTTSBCGGGT
T ss_pred CCCEEEEeeeEECCCCCCHHHHHHHHHcCCCccccCCchh--------------cccCccceeeeeccccccccCChhhc
Confidence 3689999999999999999999999999999999998654 23455677888864222456999989
Q ss_pred CCchhhhccCHHHHHHHHHHHHHHHHcCCCC-CCCCCCCceeEEEecCCCChhhHHHHHHHHHHhccccCCCcchhhhhh
Q 011989 118 LNSKDHRSIARFIAYALCAADEALHDAKWLP-SDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILI 196 (473)
Q Consensus 118 ~~~~~~~~~~~~~~la~~aa~~Al~dAgl~~-~~~~~~~~~gvivg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (473)
+++++.+.|+|+++|+++|+++||+|||+++ .++ +..+++|++|++.++.....+++..+..++...++|+.+++.+.
T Consensus 86 ~~~~~~~~~d~~~~l~l~aa~~AL~dAGl~~~~~i-~~~~~gv~vg~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 164 (438)
T 2iwz_A 86 VSKSDIKSMSSPTIMAIGAAELAMKDSGWHPQSEA-DQVATGVAIGMGMIPLEVVSETALNFQTKGYNKVSPFFVPKILV 164 (438)
T ss_dssp SCHHHHTTSCHHHHHHHHHHHHHHHHHTCCCCSHH-HHHTEEEEEEESCCCHHHHHHHHHHHHHHCGGGSCTTHHHHTCT
T ss_pred CCHHHHHhcCHHHHHHHHHHHHHHHHcCCCCcccc-cCcceEEEEecccCcHHHHHHHHHHHHhcCCcccChhhhhhhhh
Confidence 9999999999999999999999999999987 555 36789999999999988888888888788888899999999999
Q ss_pred hHHHHHHHHhcCCCCCeeeecCCcchHHHHHHHHHHHHHcCCCCEEEEeecCCCcChHHHHHHhhhhccccccCCCCCCC
Q 011989 197 NMASGHVSMKYGFQGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEA 276 (473)
Q Consensus 197 ~~~a~~ia~~lgl~Gp~~~v~~acasg~~Al~~A~~~I~~G~~d~vlv~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (473)
+.++++|++.||++||+++|+++|+|++.||.+|+++|++|++|+|||+|+|.++++..+..|..++.++.. ..|+..
T Consensus 165 ~~~a~~ia~~lgl~gp~~~v~taCsS~l~Al~~A~~~I~~G~~d~aLvgG~e~~~~p~~~~~~~~~~~ls~~--~~p~~~ 242 (438)
T 2iwz_A 165 NMAAGQVSIRYKLKGPNHAVSTACTTGAHAVGDSFRFIAHGDADVMVAGGTDSCISPLSLAGFSRARALSTN--SDPKLA 242 (438)
T ss_dssp THHHHHHHHHHTCCSCEECBCCGGGHHHHHHHHHHHHHHHTSCSEEEEEEEECCCSHHHHHHHHHTTCBCCC--SCTTTS
T ss_pred hHHHHHHHHHhCCCCceeeecCchhHHHHHHHHHHHHHHcCCCCEEEEEeeehhcCHHHHHHHHhcCCcCCC--CCCCcc
Confidence 999999999999999999999999999999999999999999999999999988889888888888888642 235789
Q ss_pred CcCccCCCCceeeccceEEEEEccchHHHhcCCeEEEEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCcc
Q 011989 277 SRPFDCGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVD 356 (473)
Q Consensus 277 ~~pfd~~~~G~~~geGaaavvL~~~~~A~~~g~~~~a~i~g~~~~~d~~~~~~~~~~~~~~~~a~~~al~~agl~~~dId 356 (473)
|+|||.+++|+++|||+++|||++++.|+++|.++|++|+|++.++|+.+++.|++...++.++++++|+++|++|+|||
T Consensus 243 ~~pfd~~~~G~~~geGAaavvL~~~~~A~~~g~~i~a~I~g~~~~~d~~~~t~p~~~~~~~~~ai~~Al~~Agl~p~dId 322 (438)
T 2iwz_A 243 CRPFHPKRDGFVMGEGAAVLVLEEYEHAVQRRARIYAEVLGYGLSGDAGHITAPDPEGEGALRCMAAALKDAGVQPEEIS 322 (438)
T ss_dssp CCTTCTTCCSBCBBCEEEEEEEEEHHHHHHTTCCCCEEEEEEEEEECCSCSSSCCTTCHHHHHHHHHHHHHHTCCGGGCC
T ss_pred cccCCCCCCCEEeeceEEEEEeccHHHHHhCCCceEEEEecceecCCCCCCCCCCCCHHHHHHHHHHHHHHcCCCHHHcC
Confidence 99999999999999999999999999999999999999999999999999888888888999999999999999999999
Q ss_pred EEEEcCCCCCCCCHHHHHHHHHHhhcccCCCCceeeccccchhhhHHhHHHHHHHHHHHHHHhCccCCCCCCCCCCCCCC
Q 011989 357 YVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLAIHHGVAPLTLNLAKPDPIFN 436 (473)
Q Consensus 357 ~v~~hgtgt~~~D~~E~~a~~~~~~~~~~~~~~~v~s~k~~~Gh~~~AsG~~~li~~~~~l~~~~ipp~~~~~~~~~~~~ 436 (473)
|||+|+|||+.+|.+|..++.++|+... .+++|+++|+++||+++|+|++++++++++|++++|||++|+++|+|.++
T Consensus 323 ~ve~HgtgT~~gD~~E~~al~~~fg~~~--~~~~v~s~K~~~GH~~gAaG~~~li~~~l~l~~~~ipp~~~~~~~~p~~~ 400 (438)
T 2iwz_A 323 YINAHATSTPLGDAAENKAIKHLFKDHA--YALAVSSTKGATGHLLGAAGAVEAAFTTLACYYQKLPPTLNLDCSEPEFD 400 (438)
T ss_dssp EEECCCCSCHHHHHHHHHHHHHHHGGGG--GTSEEECCHHHHCBCGGGHHHHHHHHHHHHHHHTEECCBTTCSCCCTTCC
T ss_pred EEEecCCCCcccCHHHHHHHHHHHhccC--CCcceecchhhhcCCHHHHHHHHHHHHHHHHhcCccCCCCCCCCCCCCCC
Confidence 9999999999999999999999998642 46899999999999999999999999999999999999999999999999
Q ss_pred CCCCccccCCCCC---CcEEEEeccccccceeeEEEeec
Q 011989 437 DNFMPLTASKDMP---ISAALSNSFGFGGTNASLLFTKC 472 (473)
Q Consensus 437 ~~~~~~~~~~~~~---~~~~l~~s~g~gG~~~~~vl~~~ 472 (473)
+++++ .+.+.++ ++++++|||||||+|+|+||++|
T Consensus 401 ~~~v~-~~~~~~~~~~~~~a~~~sfGfGG~na~~vl~~~ 438 (438)
T 2iwz_A 401 LNYVP-LKAQEWKTEKRFIGLTNSFGFGGTNATLCIAGL 438 (438)
T ss_dssp SBCCB-SSCEECCCSSSCEEEEEEEETTTEEEEEEEECC
T ss_pred ccccC-CCcccCCCCCccEEEEecCcCCCeeEEEEEeeC
Confidence 99988 5555555 89999999999999999999986
|
| >1ox0_A Beta ketoacyl-acyl carrier protein synthase; transferase; 1.30A {Streptococcus pneumoniae} SCOP: c.95.1.1 c.95.1.1 PDB: 1oxh_A 2alm_A 2rjt_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-76 Score=600.13 Aligned_cols=410 Identities=44% Similarity=0.668 Sum_probs=378.3
Q ss_pred CCCCCceEEEecceecccCCCHHHHHHHHHcCCCceeeCCccccccCCCCccccccccCCcccceeEEecCCCCCCCCCc
Q 011989 35 LSPLRRVVVTGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSKVAAVVPCGISSGEFNE 114 (473)
Q Consensus 35 ~~~~~~v~ItG~g~~~p~g~~~~~~~~~l~~G~s~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~ 114 (473)
||+|++|+|||||+++|.|.+.++||++|++|++++++++.++ ...++.++++.+++ ||+
T Consensus 19 ~m~m~~v~ItG~g~~~P~g~~~~~~w~~l~~g~~~i~~~~~~~--------------~~~~~~~~~~~v~~------fd~ 78 (430)
T 1ox0_A 19 HMKLNRVVVTGYGVTSPIGNTPEEFWNSLATGKIGIGGITKFD--------------HSDFDVHNAAEIQD------FPF 78 (430)
T ss_dssp SCCCCCEEEEEEEEEBTTBSSHHHHHHHHHHTCCCEEECCSSC--------------CTTSSCCEEECCSS------CCH
T ss_pred cccCCCEEEEEEEEECCCcCCHHHHHHHHHcCCCeeeeCCccc--------------ccCCccceeeeccC------CCh
Confidence 4556899999999999999999999999999999999998644 23345667777765 998
Q ss_pred ccCCCchhhhccCHHHHHHHHHHHHHHHHcCCCCCCCCCCCceeEEEecCCCChhhHHHHHHHHHHhccccCCCcchhhh
Q 011989 115 DSWLNSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRI 194 (473)
Q Consensus 115 ~~~~~~~~~~~~~~~~~la~~aa~~Al~dAgl~~~~~~~~~~~gvivg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (473)
.+|+++++.+.|||+++|+++|+++||+|||++++++ +..+++|++|++.+++....+++..+..++.+.++|+.+++.
T Consensus 79 ~~~~~~~~~~~~d~~~~l~l~aa~~AL~dAG~~~~~i-~~~~~gv~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (430)
T 1ox0_A 79 DKYFVKKDTNRFDNYSLYALYAAQEAVNHANLDVEAL-NRDRFGVIVASGIGGIKEIEDQVLRLHEKGPKRVKPMTLPKA 157 (430)
T ss_dssp HHHCCGGGGGTCCHHHHHHHHHHHHHHHHTTCCTTTS-CGGGEEEEEECSSCSHHHHHHHHHHHHHHCGGGSCTTHHHHH
T ss_pred hhcCCHHHHHhcCHHHHHHHHHHHHHHHHcCCChhhc-CccceEEEEEecCCcHHHHHHHHHHHHhcCcccCChhhhhcc
Confidence 8889999999999999999999999999999988877 488999999999999888888888887888889999999999
Q ss_pred hhhHHHHHHHHhcCCCCCeeeecCCcchHHHHHHHHHHHHHcCCCCEEEEeecCCCcChHHHHHHhhhhccccccCCCCC
Q 011989 195 LINMASGHVSMKYGFQGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQ 274 (473)
Q Consensus 195 ~~~~~a~~ia~~lgl~Gp~~~v~~acasg~~Al~~A~~~I~~G~~d~vlv~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (473)
+.+.++++|++.||++||+++|+++|+|++.||.+|+++|++|++|+|||+|+|.++++..+..|..++.++. ...++
T Consensus 158 ~~~~~a~~is~~lgl~Gp~~~v~~aCsS~l~Al~~A~~~I~~G~~d~aLvgG~e~~~~p~~~~~~~~~~~ls~--~~~p~ 235 (430)
T 1ox0_A 158 LPNMASGNVAMRFGANGVCKSINTACSSSNDAIGDAFRSIKFGFQDVMLVGGTEASITPFAIAGFQALTALST--TEDPT 235 (430)
T ss_dssp STTHHHHHHHHHHTCCSCEECCCCGGGHHHHHHHHHHHHHHTTSCSEEEEEEEECCCSHHHHHHHHHTTCBCC--CSSTT
T ss_pred chhHHHHHHHHHhcCCCceEeecCchHHHHHHHHHHHHHHHcCCCCEEEEeeeccccCHHHHHHHHhCCCccC--CCCCC
Confidence 9999999999999999999999999999999999999999999999999999999889988888888887764 23467
Q ss_pred CCCcCccCCCCceeeccceEEEEEccchHHHhcCCeEEEEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCC
Q 011989 275 EASRPFDCGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQ 354 (473)
Q Consensus 275 ~~~~pfd~~~~G~~~geGaaavvL~~~~~A~~~g~~~~a~i~g~~~~~d~~~~~~~~~~~~~~~~a~~~al~~agl~~~d 354 (473)
..|+|||.+++|+++||||+++||++++.|+++|.++|++|.|++.++|+.+.+.|++...++.++++++|+++|++++|
T Consensus 236 ~~~~pFd~~~~g~~~geGAaavvL~~~~~A~~~g~~i~a~I~g~~~~~dg~~~~~p~~~~~~~~~ai~~al~~Agl~~~d 315 (430)
T 1ox0_A 236 RASIPFDKDRNGFVMGEGSGMLVLESLEHAEKRGATILAEVVGYGNTCDAYHMTSPHPEGQGAIKAIKLALEEAEISPEQ 315 (430)
T ss_dssp SSSCTTBTTCCSBCBCCEEEEEEEEEHHHHHHTTCCCCEEEEEEEEEECCSCSSSCCTTCHHHHHHHHHHHHHHTCCGGG
T ss_pred CCCCCCCCCCCCccccceEEEEEECcHHHHHhCCCceEEEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHHhCcCHHH
Confidence 89999999999999999999999999999999999999999999999999998888888889999999999999999999
Q ss_pred ccEEEEcCCCCCCCCHHHHHHHHHHhhcccCCCCceeeccccchhhhHHhHHHHHHHHHHHHHHhCccCCCCCCCCCCCC
Q 011989 355 VDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLAIHHGVAPLTLNLAKPDPI 434 (473)
Q Consensus 355 Id~v~~hgtgt~~~D~~E~~a~~~~~~~~~~~~~~~v~s~k~~~Gh~~~AsG~~~li~~~~~l~~~~ipp~~~~~~~~~~ 434 (473)
||||++|+|||+.+|..|..++.++|+. +++|+++|+++||+++|+|++++++++++|++++|||++|+++|+|.
T Consensus 316 Id~ve~Hgtgt~~~D~~E~~al~~~~g~-----~~~v~s~k~~~GH~~gAaG~~~~i~~~~~l~~~~ipp~~~~~~~~p~ 390 (430)
T 1ox0_A 316 VAYVNAHGTSTPANEKGESGAIVAVLGK-----EVPVSSTKSFTGHLLGAAGAVEAIVTIEAMRHNFVPMTAGTSEVSDY 390 (430)
T ss_dssp CCCEECCCCSCHHHHHHHHHHHHHHHCS-----SSEEECTHHHHCBCGGGHHHHHHHHHHHHHHHTEECCBSSCCSBCTT
T ss_pred cCEEEEeCCcCcccCHHHHHHHHHHhCC-----CceecccccccccchhhHHHHHHHHHHHHHhcCccCCCCCCCCCCCC
Confidence 9999999999999999999999999975 48999999999999999999999999999999999999999999999
Q ss_pred CCCCCCccccCCCCCCcEEEEeccccccceeeEEEeecC
Q 011989 435 FNDNFMPLTASKDMPISAALSNSFGFGGTNASLLFTKCQ 473 (473)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~l~~s~g~gG~~~~~vl~~~~ 473 (473)
+++++++ .+.+..+++++++|||||||+|+|+||++|+
T Consensus 391 ~~~~~v~-~~~~~~~~~~a~~~sfGfGG~na~~vl~~~~ 428 (430)
T 1ox0_A 391 IEANVVY-GQGLEKEIPYAISNTFGFGGHNAVLAFKRWE 428 (430)
T ss_dssp CCSEECB-SSCEECCCSEEEEEEEETTTEEEEEEEECCC
T ss_pred CCcccCC-CCCcCCCCCEEEEeCccCCCceEEEEEeecC
Confidence 9999887 5556678899999999999999999999984
|
| >4ddo_A 3-oxoacyl-[acyl-carrier-protein] synthase 2; ssgcid, struct genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia vietnamiensis} PDB: 4f32_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-76 Score=606.22 Aligned_cols=420 Identities=48% Similarity=0.786 Sum_probs=385.0
Q ss_pred CCCCceEEEecceecccCCCHHHHHHHHHcCCCceeeCCccccccCCCCccccccccCCcccceeEEecCC--CCCCCCC
Q 011989 36 SPLRRVVVTGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSKVAAVVPCG--ISSGEFN 113 (473)
Q Consensus 36 ~~~~~v~ItG~g~~~p~g~~~~~~~~~l~~G~s~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~fd 113 (473)
.|+++|+|||||+++|+|.+.++||++|++|++++++++.++ ...++.+++++++.. .+...||
T Consensus 21 ~m~~~v~ItG~g~~~P~g~~~~~~w~~l~~g~s~i~~~~~~~--------------~~~~~~~~~g~v~~~~~~~~~~fd 86 (451)
T 4ddo_A 21 SMTLRVVVTGIGIVSPLGCGKELVWQRLIGGGSGLRRLGDDI--------------AGELSAKVGGTVQDVAEDPEGGFD 86 (451)
T ss_dssp ---CCEEEEEEEEEETTEESHHHHHHHHHTTCCCEEECCHHH--------------HTTSSCCEEECCCCTTTCTTTCCC
T ss_pred cCCCCEEEEEeEEECCCCCCHHHHHHHHHcCCCeeeeCCccc--------------cccccCccceEccccccccccccc
Confidence 346899999999999999999999999999999999998654 234556778887631 1123599
Q ss_pred cccCCCchhhhccCHHHHHHHHHHHHHHHHcCCCCCCCCCCCceeEEEecCCCChhhHHHHHHHHHHhccccCCCcchhh
Q 011989 114 EDSWLNSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPR 193 (473)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~la~~aa~~Al~dAgl~~~~~~~~~~~gvivg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (473)
+.+|+++++.+.|+++++|+++|+++||+|||+++.++.+..+++|++|++.+.......++..+...+...++|+.+++
T Consensus 87 ~~~~i~~~~~~~~d~~~~L~l~Aa~~AL~dAGl~~~~i~d~~~~gv~vgt~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (451)
T 4ddo_A 87 PERSVPHKELRKMDRFIQMAMVAADEALAEAGWAPEAEQQRERTATVVASGIGGFPGLAEAVRIGETRGVRRLSPFTIPF 166 (451)
T ss_dssp GGGTSCHHHHTTSCHHHHHHHHHHHHHHHHHTCCCCSHHHHTTEEEEEECSSCSHHHHHHHHHHHHHTCGGGCCTTHHHH
T ss_pred hhhhCCHHHHhhCCHHHHHHHHHHHHHHHHcCCChhhcccccceEEEEeecCCchHHHHHHHHHHHhcCccccCcchhhc
Confidence 99999999999999999999999999999999998876237799999999999999998988888888888999999999
Q ss_pred hhhhHHHHHHHHhcCCCCCeeeecCCcchHHHHHHHHHHHHHcCCCCEEEEeecCCCcChHHHHHHhhhhccccccCCCC
Q 011989 194 ILINMASGHVSMKYGFQGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTP 273 (473)
Q Consensus 194 ~~~~~~a~~ia~~lgl~Gp~~~v~~acasg~~Al~~A~~~I~~G~~d~vlv~g~d~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (473)
...+.++++|++.||++||+++|+++|+|++.||.+|+++|++|++|+|||+|+|.++.+..+..+...+.++..+...+
T Consensus 167 ~~~~~~a~~ia~~lgl~Gp~~~v~~aCsS~l~Al~~A~~~I~~G~~d~vLvgG~e~~~~~~~~~~~~~~~~ls~~~~~~~ 246 (451)
T 4ddo_A 167 FLSNLAAGQISIKHRFRGPLGCPVTACAASVQAIGDAMRMIRTGEADVVLAGGAEAAFDKVSLGGFAAARALSTGFSEEP 246 (451)
T ss_dssp HCTTHHHHHHHHHHTCCSCEECCCCGGGHHHHHHHHHHHHHHHTSCSEEEEEEEECCCSHHHHHHHHHTTCBCCSCTTSG
T ss_pred cccchHHHHHHHHhcCCCceeeecCccHHHHHHHHHHHHHHHCCCCCEEEEeccccccCHHHHHHHHHHhhhccCCCcCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999887666667
Q ss_pred CCCCcCccCCCCceeeccceEEEEEccchHHHhcCCeEEEEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHHcCCCCC
Q 011989 274 QEASRPFDCGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSH 353 (473)
Q Consensus 274 ~~~~~pfd~~~~G~~~geGaaavvL~~~~~A~~~g~~~~a~i~g~~~~~d~~~~~~~~~~~~~~~~a~~~al~~agl~~~ 353 (473)
...++|||.+++|+++||||++|||++++.|+++|.+++++|.|++.++|+.+.+.+.+...++.++++++|+++|++++
T Consensus 247 ~~~~~pfd~~~~g~v~gdGAaavvL~~~~~A~~~g~~i~a~i~g~~~~~d~~~~~~~~~~~~~~~~ai~~al~~Agl~~~ 326 (451)
T 4ddo_A 247 VRASRPFDRDRDGFVMGEGAAMVVVESLDHALARGARPIAEIIGYGTTADAYHMTAGPDDGSGAMRAMKLALRMGDVAPE 326 (451)
T ss_dssp GGSCCTTBTTCCSBCBBCEEEEEEEEEHHHHHHTTCCCSEEEEEEEEEECCSCSSCCCTTCHHHHHHHHHHHHHHTCCGG
T ss_pred cccccccccCCCCcEEeceEEEEEEeeHHHHHhCCCceEEEEEEEEEecCCCccCCCCCCHHHHHHHHHHHHHHcCCCHH
Confidence 78999999999999999999999999999999999999999999999999998888888888999999999999999999
Q ss_pred CccEEEEcCCCCCCCCHHHHHHHHHHhhcccCCCCceeeccccchhhhHHhHHHHHHHHHHHHHHhCccCCCCCCCCCCC
Q 011989 354 QVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLAIHHGVAPLTLNLAKPDP 433 (473)
Q Consensus 354 dId~v~~hgtgt~~~D~~E~~a~~~~~~~~~~~~~~~v~s~k~~~Gh~~~AsG~~~li~~~~~l~~~~ipp~~~~~~~~~ 433 (473)
|||||++|+|||+++|.+|..++.++|+.. .+++|+++|+++||++||+|++++++++++|++++|||++|+++|+|
T Consensus 327 dId~ve~Hgtgt~~~d~~E~~al~~~~~~~---~~~~v~s~k~~~GH~~gAaG~~~~i~~~~~l~~~~ipp~~~~~~~~~ 403 (451)
T 4ddo_A 327 QVDYVNAHATSTPVGDAGEIEALKTVFGVG---AGPAISSTKSATGHLLGAAGAIEAAFSILALRDGVLPGTLNLEHPDP 403 (451)
T ss_dssp GCCEEECCCCSCHHHHHHHHHHHHHHHCSS---SSCEEECTHHHHCBCGGGHHHHHHHHHHHHHHHTEECCCTTCSSBCG
T ss_pred HcCEEEecCCcCcccCHHHHHHHHHHhCCC---CCCcccCchhhhccCHHHHHHHHHHHHHHHHhcCCcCCCCCCCCCCc
Confidence 999999999999999999999999999862 47899999999999999999999999999999999999999999999
Q ss_pred CC-CCCCCccccCCCCCCcEEEEeccccccceeeEEEeecC
Q 011989 434 IF-NDNFMPLTASKDMPISAALSNSFGFGGTNASLLFTKCQ 473 (473)
Q Consensus 434 ~~-~~~~~~~~~~~~~~~~~~l~~s~g~gG~~~~~vl~~~~ 473 (473)
.+ ++++++ .+.+..+.+++++|||||||+|+|+||++|.
T Consensus 404 ~~~~~~~~~-~~~~~~~~~~a~~~sfgfgG~na~~vl~~~~ 443 (451)
T 4ddo_A 404 AADGLDLIG-PAARHVPVEIALSNGFGFGGVNASVLFRRYP 443 (451)
T ss_dssp GGTTSEECC-SSCEECCCSEEEEEEEETTTEEEEEEEEESC
T ss_pred ccccccccC-CCCCCCCcCEEEEeeEcCCCceEEEEEeeCC
Confidence 99 788887 5666778999999999999999999999974
|
| >3mqd_A Beta-ketoacyl synthase; ssgcid, ALS collaborative crystallography, beta-ketoacyl SYN brucella melitensis, fragments of LIFE; HET: 3MQ; 1.25A {Brucella melitensis biovar abortus} PDB: 3lrf_A* 3u0e_A* 3u0f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-76 Score=602.55 Aligned_cols=408 Identities=38% Similarity=0.578 Sum_probs=368.1
Q ss_pred CCCCCceEEEecceecccCCCHHHHHHHHHcCCCceeeCCccccccCCCCccccccccCCcccceeEEecCCCCCCCCCc
Q 011989 35 LSPLRRVVVTGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSKVAAVVPCGISSGEFNE 114 (473)
Q Consensus 35 ~~~~~~v~ItG~g~~~p~g~~~~~~~~~l~~G~s~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~ 114 (473)
.++|++|+|||||+++|+|.+.++||++|++|++++++++.++ ...++.++++.+ + ||+
T Consensus 19 ~~~m~~V~ItG~g~~~p~g~~~~~~w~~l~~g~~~i~~~~~~~--------------~~~~~~~~~g~~-~------fd~ 77 (428)
T 3mqd_A 19 PGSMRRVVVTGMGIVSSIGSNTEEVTASLREAKSGISRAEEYA--------------ELGFRCQVHGAP-D------IDI 77 (428)
T ss_dssp ---CCCEEEEEEEEEBTTBSSHHHHHHHHHHTCCCEEECHHHH--------------HTTCSCCEEECC-C------CCH
T ss_pred CCCCCCEEEEeeEEECCCcCCHHHHHHHHHcCCCcceeCCccc--------------ccCCCccccccc-C------CCh
Confidence 3456899999999999999999999999999999999998644 223455566653 3 999
Q ss_pred ccCCCchhhhccCHHHHHHHHHHHHHHHHcCCCCCCCCCCCceeEEEecCCCChhhHHHHHHHHHHhccccCCCcchhhh
Q 011989 115 DSWLNSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRI 194 (473)
Q Consensus 115 ~~~~~~~~~~~~~~~~~la~~aa~~Al~dAgl~~~~~~~~~~~gvivg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (473)
.+|+++++.+.|+++++|+++|+++||+|||++++++ +..++||++|++.+.......+...+.+.+...++|+.+++.
T Consensus 78 ~~~i~~~~~~~~d~~~~l~~~aa~~Al~dAGl~~~~i-~~~~~Gv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (428)
T 3mqd_A 78 ESLVDRRAMRFHGRGTAWNHIAMDQAIADAGLTEEEV-SNERTGIIMGSGGPSTRTIVDSADITREKGPKRVGPFAVPKA 156 (428)
T ss_dssp HHHSCTGGGTTCCHHHHHHHHHHHHHHHHHTCCHHHH-SSTTEEEEEEESSCCHHHHHHHHHHHHHHCGGGGCTTCHHHH
T ss_pred hhcCCHHHHhhCCHHHHHHHHHHHHHHHHcCCChhHc-cccceEEEEccCCCchHHHHHHHHHHHhcCccccCchhhccc
Confidence 9899999999999999999999999999999988777 488999999999988887888888888888899999999999
Q ss_pred hhhHHHHHHHHhcCCCCCeeeecCCcchHHHHHHHHHHHHHcCCCCEEEEeecCCCcChHHHHHHhhhhccccccCCCCC
Q 011989 195 LINMASGHVSMKYGFQGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQ 274 (473)
Q Consensus 195 ~~~~~a~~ia~~lgl~Gp~~~v~~acasg~~Al~~A~~~I~~G~~d~vlv~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (473)
+.+.++++|++.||++||+++|+++|+|++.||.+|+++|++|++|++||+|+|.++ +.....+...+.++......|+
T Consensus 157 ~~~~~a~~ia~~lgl~gp~~tv~~aCsSgl~Ai~~A~~~I~~G~~d~alvgG~e~~s-~~~~~~~~~~~~ls~~~~~~p~ 235 (428)
T 3mqd_A 157 MSSTASATLATFFKIKGINYSISSACATSNHCIGNAYEMIQYGKQDRMFAGGCEDLD-WTLSVLFDAMGAMSSKYNDTPS 235 (428)
T ss_dssp STTHHHHHHHHHTTCCSCEECCCCGGGHHHHHHHHHHHHHHTTSCSEEEEEEEECCC-HHHHHHHHHTTCBCCTTTTSGG
T ss_pred cccHHHHHHHHHcCCCCceeeecCccHHHHHHHHHHHHHHHcCCCCEEEEEeecccc-hHHHHHHHHhhhhcccccCCcc
Confidence 999999999999999999999999999999999999999999999999999999954 5555568888888866566678
Q ss_pred CCCcCccCCCCceeeccceEEEEEccchHHHhcCCeEEEEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCC
Q 011989 275 EASRPFDCGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQ 354 (473)
Q Consensus 275 ~~~~pfd~~~~G~~~geGaaavvL~~~~~A~~~g~~~~a~i~g~~~~~d~~~~~~~~~~~~~~~~a~~~al~~agl~~~d 354 (473)
..|+|||.+++|+++||||++|||+++++|+++|.+||++|.|++.++|+.+++.| ...++.+++++||+ |++ +|
T Consensus 236 ~~~rpfd~~~~G~v~gEGAaavvL~~~~~A~~~g~~i~a~I~g~~~~~dg~~~~~P--~~~~~~~ai~~Al~--gl~-~d 310 (428)
T 3mqd_A 236 TASRAYDKNRDGFVIAGGAGVLVLEDLETALARGAKIYGEIVGYGATSDGYDMVAP--SGEGAIRCMKMALS--TVT-SK 310 (428)
T ss_dssp GSCCTTBTTCCSBCBBCEEEEEEEEEHHHHHHTTCCCCEEEEEEEEEECCSCSSSC--CSHHHHHHHHHHHT--TCC-SC
T ss_pred cccCcccCCCCCcccccceEEEEEccHHHHHhCCCcEEEEEEEEEEcCCCCCCCCC--CHHHHHHHHHHHHh--CCc-cc
Confidence 89999999999999999999999999999999999999999999999999988877 56788999999999 999 99
Q ss_pred ccEEEEcCCCCCCCCHHHHHHHHHHhhcccCCCCceeeccccchhhhHHhHHHHHHHHHHHHHHhCccCCCCCCCCCCCC
Q 011989 355 VDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLAIHHGVAPLTLNLAKPDPI 434 (473)
Q Consensus 355 Id~v~~hgtgt~~~D~~E~~a~~~~~~~~~~~~~~~v~s~k~~~Gh~~~AsG~~~li~~~~~l~~~~ipp~~~~~~~~~~ 434 (473)
|||||+|||||+.+|.+|..++.++|+... ..++++++|+++||+++|||++++++++++|++++|||++|+++|+|.
T Consensus 311 Id~ve~HgtgT~~~D~~E~~al~~~~~~~~--~~~~v~s~K~~~GH~~gAsG~~~~i~~~~~l~~~~ipp~~~~~~~~p~ 388 (428)
T 3mqd_A 311 IDYINPHATSTPAGDAPEIEAIRQIFGAGD--VCPPIAATKSLTGHSLGATGVQEAIYSLLMMQNNFICESAHIEELDPA 388 (428)
T ss_dssp CCEEECCCCSCHHHHHHHHHHHHHHHCSGG--GSCCBCCTHHHHCBCGGGHHHHHHHHHHHHHHHTEECCCTTCSSBCGG
T ss_pred cCEEEEeCCCCCCcCHHHHHHHHHHhcccC--CCceeecchhhhcccHHHHHHHHHHHHHHHHHhCCcCCCCCCCCCCcc
Confidence 999999999999999999999999998422 247999999999999999999999999999999999999999999999
Q ss_pred CC-CCCCccccCCCCCCcEEEEeccccccceeeEEEeecC
Q 011989 435 FN-DNFMPLTASKDMPISAALSNSFGFGGTNASLLFTKCQ 473 (473)
Q Consensus 435 ~~-~~~~~~~~~~~~~~~~~l~~s~g~gG~~~~~vl~~~~ 473 (473)
++ +++++ ...+..+++++++|||||||+|+|+||++|+
T Consensus 389 ~~~~~~~~-~~~~~~~~~~~~~~sfGfGG~Na~~vl~~~~ 427 (428)
T 3mqd_A 389 FADMPIVR-KRIDNVQLNTVLSNSFGFGGTNATLVFQRYQ 427 (428)
T ss_dssp GTTSCBCS-SCEESCCCCEEEEEEEETTTEEEEEEEECCC
T ss_pred cccCCccC-CccccCCCCEEEEecCcCCcceEEEEEeecC
Confidence 86 77776 4444467899999999999999999999985
|
| >1j3n_A 3-oxoacyl-(acyl-carrier protein) synthase II; condensing enzymes, fatty acid elongation, acyl-carrier protein (ACP); HET: CIT; 2.00A {Thermus thermophilus} SCOP: c.95.1.1 c.95.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=8.7e-76 Score=596.46 Aligned_cols=407 Identities=53% Similarity=0.868 Sum_probs=376.6
Q ss_pred CceEEEecceecccCCCHHHHHHHHHcCCCceeeCCccccccCCCCccccccccCCcccceeEEecCCCCCCCCCcccCC
Q 011989 39 RRVVVTGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSKVAAVVPCGISSGEFNEDSWL 118 (473)
Q Consensus 39 ~~v~ItG~g~~~p~g~~~~~~~~~l~~G~s~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~~~~~ 118 (473)
++|+|||||+++|+|.++++||++|++|++++++++.++ ...++.++++++ + ||+.+|+
T Consensus 2 ~~v~I~G~g~~~p~g~~~~~~w~~l~~g~~~~~~~~~~~--------------~~~~~~~~~~~~-~------fd~~~~~ 60 (408)
T 1j3n_A 2 RRVVVTGLGALTPIGVGQEAFHKAQLAGKSGVRPITRFD--------------ASALPVRIAAEV-D------VDPGAYL 60 (408)
T ss_dssp CCEEEEEEEEEETTEESHHHHHHHHHHTCCCEEECCSSC--------------CTTSSCCEEECC-C------CCGGGTS
T ss_pred CCEEEEEeEEECCCCCCHHHHHHHHHcCCCeeeeccccC--------------cccCccceEEEE-c------cChhhcC
Confidence 689999999999999999999999999999999997644 234556677777 4 9998889
Q ss_pred CchhhhccCHHHHHHHHHHHHHHHHcCCCCCCCCCCCceeEEEecCCCChhhHHHHHHHHHHhccccCCCcchhhhhhhH
Q 011989 119 NSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINM 198 (473)
Q Consensus 119 ~~~~~~~~~~~~~la~~aa~~Al~dAgl~~~~~~~~~~~gvivg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (473)
++++.+.|+++++|+++|+++||+|||++++++ +..++||++|++.++......++..+..++...++|+.+++.+++.
T Consensus 61 ~~~~~~~~d~~~~l~~~aa~~AL~dAGl~~~~i-d~~~~gv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (408)
T 1j3n_A 61 DRKELRRLDRFVQYALIAAQLALEDAGLKPEDL-DPERVGTLVGTGIGGMETWEAQSRVFLERGPNRISPFFIPMMIANM 139 (408)
T ss_dssp CHHHHTTSCHHHHHHHHHHHHHHHHHTCCGGGS-CGGGEEEEEECSSCCHHHHHHHHHHHHHHCGGGSCTTHHHHHSTTH
T ss_pred CHHHHHhcCHHHHHHHHHHHHHHHHcCCCcccc-CCCceEEEEEecCCcHHHHHHHHHHHHhcCcccCChhhhhhhhhhH
Confidence 999999999999999999999999999988777 4789999999999998888888888888888899999999999999
Q ss_pred HHHHHHHhcCCCCCeeeecCCcchHHHHHHHHHHHHHcCCCCEEEEeecCCCcChHHHHHHhhhhccccccCCCCCCCCc
Q 011989 199 ASGHVSMKYGFQGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASR 278 (473)
Q Consensus 199 ~a~~ia~~lgl~Gp~~~v~~acasg~~Al~~A~~~I~~G~~d~vlv~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (473)
++++|++.||++||+++|+++|+|++.||.+|+++|++|++|++||+|+|.++++..+..|...+.++.+ +..++..|+
T Consensus 140 ~a~~ia~~lgl~gp~~~v~~aCsS~l~Al~~A~~~I~~G~~d~aLvgG~e~~~~~~~~~~~~~~~~ls~~-~~~p~~~~~ 218 (408)
T 1j3n_A 140 ASAHIAMRYGFTGPSSTVVTACATGADALGSALRMIQLGEADLVLAGGTEAAITPMAIGAFAVMRALSTR-NEEPEKASR 218 (408)
T ss_dssp HHHHHHHHHTCCSCBCCBCCGGGHHHHHHHHHHHHHHTTSCSEEEEEEEECCCSHHHHHHHHHTTCBCCC-TTCHHHHCC
T ss_pred HHHHHHHHhCCCCceeCccCchHHHHHHHHHHHHHHHcCCCCEEEEeeecccCCHHHHHHHHhcccccCC-CCCCCcCcc
Confidence 9999999999999999999999999999999999999999999999999998999988899888888743 344567899
Q ss_pred CccCCCCceeeccceEEEEEccchHHHhcCCeEEEEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEE
Q 011989 279 PFDCGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYV 358 (473)
Q Consensus 279 pfd~~~~G~~~geGaaavvL~~~~~A~~~g~~~~a~i~g~~~~~d~~~~~~~~~~~~~~~~a~~~al~~agl~~~dId~v 358 (473)
|||.+++|+++|||++++||++++.|+++|.+++++|.|++.++|+.+.+.|++...++.++++++|+++|++++|||||
T Consensus 219 pfd~~~dg~v~geGaaavvL~~~~~A~~~g~~i~a~i~g~~~~~d~~~~~~p~~~~~~~~~ai~~al~~Agl~~~dId~v 298 (408)
T 1j3n_A 219 PFTLSRDGFVMGEGAGVLVLEAYEHAKKRGARIYAELVGFGRSADAHHITEPHPEGKGAALAMARALKDAGIAPEQVGYI 298 (408)
T ss_dssp TTBTTCCCBCBBCEEEEEEEEEHHHHHHTTCCCCEEEEEEEEEECCSCSSCCCTTCHHHHHHHHHHHHHHTCCGGGCCEE
T ss_pred cCcCCCCceEEeeeEEEEEEeeHHHHHhCCCcEEEEEEEEEEcCCCCCCCCCCCCHHHHHHHHHHHHHHcCCCHHHcCEE
Confidence 99999999999999999999999999999999999999999999999988888888899999999999999999999999
Q ss_pred EEcCCCCCCCCHHHHHHHHHHhhcccCCCCceeeccccchhhhHHhHHHHHHHHHHHHHHhCccCCCCCCCCCCCCCCCC
Q 011989 359 NAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLAIHHGVAPLTLNLAKPDPIFNDN 438 (473)
Q Consensus 359 ~~hgtgt~~~D~~E~~a~~~~~~~~~~~~~~~v~s~k~~~Gh~~~AsG~~~li~~~~~l~~~~ipp~~~~~~~~~~~~~~ 438 (473)
++|+|||+.+|.+|..++.++|+... .++++++.|.++||+++|+|++++++++++|++++|||++|+++|+|.++++
T Consensus 299 e~Hgtgt~~gD~~E~~al~~~~g~~~--~~~~v~s~k~~~GH~~~AsG~~~li~~~l~l~~~~ipp~~~~~~~~~~~~~~ 376 (408)
T 1j3n_A 299 NAHGTSTPVGDRAEVLAIKRVFGDHA--KRLMVSSTKSMIGHLLGAAGAVEAIATVQALYHGVIPPTINLEDPDPELDLD 376 (408)
T ss_dssp ECCCCSCHHHHHHHHHHHHHHHHHHH--TTCEEECTHHHHCBCGGGHHHHHHHHHHHHHHHTEECCCTTTTSBCTTSCSB
T ss_pred EEeCCcCcccCHHHHHHHHHHhcCcC--CCceEECchhhhccCHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcc
Confidence 99999999999999999999998643 3689999999999999999999999999999999999999999999999999
Q ss_pred CCccccCCCCCCcEEEEeccccccceeeEEEeec
Q 011989 439 FMPLTASKDMPISAALSNSFGFGGTNASLLFTKC 472 (473)
Q Consensus 439 ~~~~~~~~~~~~~~~l~~s~g~gG~~~~~vl~~~ 472 (473)
+++ +++..+++++++|||||||+|+|+||++|
T Consensus 377 ~v~--~~~~~~~~~a~~~sfGfGG~na~~vl~~~ 408 (408)
T 1j3n_A 377 FVP--EPREAKVDYALSNSFAFGGHNAVLAFKRV 408 (408)
T ss_dssp CCS--SCEECCCSEEEEEEECTTSEEEEEEEECC
T ss_pred cCC--CCcCCCCCEEEEecccCCcceEEEEEecC
Confidence 887 45667889999999999999999999986
|
| >1tqy_B Actinorhodin polyketide putative beta-ketoacyl SY; alpha-beta-alpha-beta-alpha, heterodimer, transferase; 2.00A {Streptomyces coelicolor} SCOP: c.95.1.1 c.95.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-75 Score=592.20 Aligned_cols=404 Identities=25% Similarity=0.375 Sum_probs=372.3
Q ss_pred CCceEEEecceecccCCCHHHHHHHHHcCCCceeeCCccccccCCCCccccccccCCcccceeEEecCCCCCCCCCcccC
Q 011989 38 LRRVVVTGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSKVAAVVPCGISSGEFNEDSW 117 (473)
Q Consensus 38 ~~~v~ItG~g~~~p~g~~~~~~~~~l~~G~s~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~~~~ 117 (473)
.++|+|||||+++|.|.+.++||++|++|++++++++.++ ...++.++++++++ ||+.+|
T Consensus 8 ~~~v~I~G~g~~~p~g~~~~~~w~~l~~g~~~i~~~~~~~--------------~~~~~~~~~~~v~~------fd~~~~ 67 (415)
T 1tqy_B 8 DKSVLITGVGVVAPNGLGLAPYWSAVLDGRHGLGPVTRFD--------------VSRYPATLAGQIDD------FHAPDH 67 (415)
T ss_dssp --CEEEEEEEEEETTEESHHHHHHHHHTTCCCEEECTTTT--------------GGGSSCCEEECCCS------CCHHHH
T ss_pred CCCEEEEeeEEECCCCCCHHHHHHHHHcCCCcEEECCccc--------------ccCCCcceEEEeCC------CCchhc
Confidence 4689999999999999999999999999999999998543 12345677888876 999888
Q ss_pred CCchhhhccCHHHHHHHHHHHHHHHHcCCCCCCCCCCCceeEEEecCCCChhhHHHHHHHHHHhccccCCCcchhhhhhh
Q 011989 118 LNSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILIN 197 (473)
Q Consensus 118 ~~~~~~~~~~~~~~la~~aa~~Al~dAgl~~~~~~~~~~~gvivg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (473)
+++++.+.|+++++|+++++++||+|||++++++ +..+++|++|++.+++....+++..+..++...++|+.+++...+
T Consensus 68 ~~~~~~~~~d~~~~l~l~aa~~AL~dAGl~~~~i-d~~~~gv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (415)
T 1tqy_B 68 IPGRLLPQTDPSTRLALTAADWALQDAKADPESL-TDYDMGVVTANACGGFDFTHREFRKLWSEGPKSVSVYESFAWFYA 146 (415)
T ss_dssp SCTTTGGGCCHHHHHHHHHHHHHHHHTTCCGGGS-CGGGEEEEEECSSCSHHHHHHHHHHHHHTCGGGSCTTHHHHSSTT
T ss_pred CCHHHHHhcCHHHHHHHHHHHHHHHHcCCCcccc-CCCCEEEEEeeCCccHHHHHHHHHHHHhcCcccCChhhhhcccch
Confidence 9999999999999999999999999999988777 478999999999999998888888888888889999999999999
Q ss_pred HHHHHHHHhcCCCCCeeeecCCcchHHHHHHHHHHHHHcCCCCEEEEeecCCCcChHHHHHHhhhhccccccCCCCCCCC
Q 011989 198 MASGHVSMKYGFQGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEAS 277 (473)
Q Consensus 198 ~~a~~ia~~lgl~Gp~~~v~~acasg~~Al~~A~~~I~~G~~d~vlv~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (473)
.++++|++.||++||+++|+++|+|++.||.+|+++|++| +|+|||+|+|.++++..+..+...+.++. +..++..|
T Consensus 147 ~~a~~ia~~lgl~gp~~~v~~aCsS~l~Al~~A~~~I~~G-~d~~LvgG~e~~~~~~~~~~~~~~~~ls~--~~~~~~~~ 223 (415)
T 1tqy_B 147 VNTGQISIRHGMRGPSSALVAEQAGGLDALGHARRTIRRG-TPLVVSGGVDSALDPWGWVSQIASGRIST--ATDPDRAY 223 (415)
T ss_dssp HHHHHHHHHHTCCSSCEEEECGGGHHHHHHHHHHHHHHHT-CSEEEEEEEECCCSHHHHHHHHTTSCBCC--CSCGGGSC
T ss_pred HHHHHHHHHhCCCCceEeecCCccHHHHHHHHHHHHHHcC-CCEEEEeeecCcCCHHHHHHHHhccCccC--CCCCCCCc
Confidence 9999999999999999999999999999999999999999 99999999999899999999998888874 23356799
Q ss_pred cCccCCCCceeeccceEEEEEccchHHHhcCC-eEEEEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCcc
Q 011989 278 RPFDCGRDGFVIGEGSGVLVLEELEHAKKRGA-KIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVD 356 (473)
Q Consensus 278 ~pfd~~~~G~~~geGaaavvL~~~~~A~~~g~-~~~a~i~g~~~~~d~~~~~~~~~~~~~~~~a~~~al~~agl~~~dId 356 (473)
+|||.+++|+++|||++++||++++.|+++|. ++|++|.|++.++|+.+++.|+. ++.++++++|+++|++++|||
T Consensus 224 ~pfd~~~~G~~~geGaaavvL~~~~~A~~~g~~~i~a~I~g~~~~~dg~~~~~p~~---~~~~ai~~al~~Agl~~~dId 300 (415)
T 1tqy_B 224 LPFDERAAGYVPGEGGAILVLEDSAAAEARGRHDAYGELAGCASTFDPAPGSGRPA---GLERAIRLALNDAGTGPEDVD 300 (415)
T ss_dssp CTTSTTCCCBCBBCEEEEEEEEEHHHHHHHTCCCCSEEEEEEEEEECCCTTCCCCC---SHHHHHHHHHHHHTCCGGGCC
T ss_pred CCCCCCCCCcceeeeEEEEEECcHHHHHHCCCCceEEEEEEEEEccCCCCCCCCCH---HHHHHHHHHHHHcCCCHhHCC
Confidence 99999999999999999999999999999999 99999999999999999888875 678999999999999999999
Q ss_pred EEEEcCCCCCCCCHHHHHHHHHHhhcccCCCCceeeccccchhhhHHhHHHHHHHHHHHHHHhCccCCCCCCCCCCCCCC
Q 011989 357 YVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLAIHHGVAPLTLNLAKPDPIFN 436 (473)
Q Consensus 357 ~v~~hgtgt~~~D~~E~~a~~~~~~~~~~~~~~~v~s~k~~~Gh~~~AsG~~~li~~~~~l~~~~ipp~~~~~~~~~~~~ 436 (473)
|||+|||||+.+|.+|..++.++|+.. .++|++.|+++||+++|+|++++++++++|+++++||++|+++|+|.++
T Consensus 301 ~ve~Hgtgt~~~D~~E~~al~~~~g~~----~~~v~s~K~~~GH~~gAaG~~~~~~~~~~l~~~~ipp~~~~~~~~p~~~ 376 (415)
T 1tqy_B 301 VVFADGAGVPELDAAEARAIGRVFGRE----GVPVTVPKTTTGRLYSGGGPLDVVTALMSLREGVIAPTAGVTSVPREYG 376 (415)
T ss_dssp EEECCCCCSHHHHHHHHHHHHHHHCTT----CSEEECGGGGTCBCGGGHHHHHHHHHHHHHHHTSBCCBCSCCCCCGGGC
T ss_pred EEEEeCCCCcCcCHHHHHHHHHHhCCC----CceEeccchhhccChHHHHHHHHHHHHHHHhcCCcCCCCCCCCCCCCCC
Confidence 999999999999999999999999754 4899999999999999999999999999999999999999999999999
Q ss_pred CCCCccccCCCCCCcEEEEeccccccceeeEEEeecC
Q 011989 437 DNFMPLTASKDMPISAALSNSFGFGGTNASLLFTKCQ 473 (473)
Q Consensus 437 ~~~~~~~~~~~~~~~~~l~~s~g~gG~~~~~vl~~~~ 473 (473)
+++++ .+++.++++++++|||||||+|+|+||+++.
T Consensus 377 ~~~v~-~~~~~~~~~~a~~~sfGfgG~n~~~vl~~~~ 412 (415)
T 1tqy_B 377 IDLVL-GEPRSTAPRTALVLARGRWGFNSAAVLRRFA 412 (415)
T ss_dssp CEECB-SSCBCCCCSEEEEEEEETTTEEEEEEEEEC-
T ss_pred ccccC-CCCccCCCCEEEEecCcCCCeEEEEEEecCC
Confidence 98887 5667778999999999999999999999873
|
| >2vba_A 3-oxoacyl-[acyl-carrier-protein] synthase 1; cytoplasm, antibiotic, transferase, amino-thiazole, acyltransferase, lipid synthesis; HET: P4T; 1.36A {Escherichia coli} SCOP: c.95.1.1 c.95.1.1 PDB: 1fj4_A* 1g5x_A 2aq7_A* 1fj8_A* 2aqb_A 2bui_A 2buh_A 2vb7_A* 2vb8_A 2vb9_A* 1h4f_A 1dd8_A 2cdh_A 2bz4_A 2byz_A 2bz3_A* 2byy_A* 1f91_A* 2cf2_A 2byw_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-75 Score=592.96 Aligned_cols=401 Identities=37% Similarity=0.592 Sum_probs=361.9
Q ss_pred CceEEEecceecccCCCHHHHHHHHHcCCCceeeCCccccccCCCCccccccccCCcccceeEEecCCCCCCCCCcccCC
Q 011989 39 RRVVVTGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSKVAAVVPCGISSGEFNEDSWL 118 (473)
Q Consensus 39 ~~v~ItG~g~~~p~g~~~~~~~~~l~~G~s~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~~~~~ 118 (473)
++|+|||||+++|+|.+.++||++|++|++++++++.++ ...++.++++.++ ||+.+|+
T Consensus 2 ~~v~ItG~g~~~p~g~~~~~~w~~l~~g~~~i~~~~~~~--------------~~~~~~~~~~~v~-------fd~~~~~ 60 (406)
T 2vba_A 2 KRAVITGLGIVSSIGNNQQEVLASLREGRSGITFSQELK--------------DSGMRSHVWGNVK-------LDTTGLI 60 (406)
T ss_dssp CCEEEEEEEEEBTTBSSHHHHHHHHHHTCCCEEECHHHH--------------HTTCSCCEEECCC-------CCCTTSS
T ss_pred CCEEEEeeEEECCCCCCHHHHHHHHHcCCCeEEeCCccc--------------ccCCccceEEEec-------CChhhcC
Confidence 689999999999999999999999999999999988544 1234455666553 8888889
Q ss_pred CchhhhccCHHHHHHHHHHHHHHHHcCCCCCCCCCC-CceeEEEecCCCChhhHHHHHHHHH-HhccccCCCcchhhhhh
Q 011989 119 NSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQK-ERTGVSIGGGIGSISDTVDAAQMIC-EKRLRRLSPFFIPRILI 196 (473)
Q Consensus 119 ~~~~~~~~~~~~~la~~aa~~Al~dAgl~~~~~~~~-~~~gvivg~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 196 (473)
++++.+.|||+++|+++++++||+|||+++++++ . ++++|++|++.++.....+++..+. .++...++|+.+++.+.
T Consensus 61 ~~~~~~~~d~~~~l~l~aa~~Al~dAg~~~~~i~-~~~~~gv~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (406)
T 2vba_A 61 DRKVVRFMSDASIYAFLSMEQAIADAGLSPEAYQ-NNPRVGLIAGSGGGSPRFQVFGADAMRGPRGLKAVGPYVVTKAMA 139 (406)
T ss_dssp CHHHHTTCCHHHHHHHHHHHHHHHHHTCCHHHHT-TCTTEEEEEECSSCCHHHHHHHHHHHTSTTTHHHHCTTHHHHHST
T ss_pred CHHHHHhcCHHHHHHHHHHHHHHHHCCCChhHcC-CCCCEEEEEEECCcchHHHHHHHHHHHhccCccccChhhhhhhhh
Confidence 9999999999999999999999999999876664 5 8999999999999888887777665 55666788999999999
Q ss_pred hHHHHHHHHhcCCCCCeeeecCCcchHHHHHHHHHHHHHcCCCCEEEEeecCCCcChHHHHHHhhhhccccccCCCCCCC
Q 011989 197 NMASGHVSMKYGFQGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEA 276 (473)
Q Consensus 197 ~~~a~~ia~~lgl~Gp~~~v~~acasg~~Al~~A~~~I~~G~~d~vlv~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (473)
+.++++|++.||++||+++|+++|+|++.||++|+++|++|++|++||+|+|.++.+..+. |..++.++..++..|+..
T Consensus 140 ~~~a~~is~~lgl~Gp~~~v~taCsS~l~Al~~A~~~I~~G~~d~alvgG~e~~~~~~~~~-~~~~~~ls~~~~~~p~~~ 218 (406)
T 2vba_A 140 SGVSACLATPFKIHGVNYSISSACATSAHCIGNAVEQIQLGKQDIVFAGGGEELCWEMACE-FDAMGALSTKYNDTPEKA 218 (406)
T ss_dssp THHHHHHHTTTTCCSCEEEEECGGGHHHHHHHHHHHHHHTTSCSEEEEEEEECCCHHHHHH-HHHTTCBCCSCTTSGGGS
T ss_pred HHHHHHHHHhccCCCceeeeccchhHHHHHHHHHHHHHHcCCCCEEEEeeeccccChHHHH-HhhccccccccCCCCccc
Confidence 9999999999999999999999999999999999999999999999999999988887777 888888875334446789
Q ss_pred CcCccCCCCceeeccceEEEEEccchHHHhcCCeEEEEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCcc
Q 011989 277 SRPFDCGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVD 356 (473)
Q Consensus 277 ~~pfd~~~~G~~~geGaaavvL~~~~~A~~~g~~~~a~i~g~~~~~d~~~~~~~~~~~~~~~~a~~~al~~agl~~~dId 356 (473)
|+|||.+++|+++|||+++|||+++++|+++|++||++|.|++.++|+.+++.|+ ..++.++++++|+++| +|||
T Consensus 219 ~~pfd~~~~G~v~gEGaaavvL~~~~~A~~~g~~i~a~I~g~~~~~dg~~~t~p~--~~~~~~ai~~al~~ag---~dId 293 (406)
T 2vba_A 219 SRTYDAHRDGFVIAGGGGMVVVEELEHALARGAHIYAEIVGYGATSDGADMVAPS--GEGAVRCMKMAMHGVD---TPID 293 (406)
T ss_dssp CCTTBTTCCSBCBBCEEEEEEEEEHHHHHHTTCCCCEEEEEEEEEECCSCTTSCC--SHHHHHHHHHHHTTCC---SCCC
T ss_pred cCcCcCCCCceEeeceEEEEEeCcHHHHHHCCCeEEEEEEEEEEcCCCCCCCCCC--HHHHHHHHHHHHhhCC---CCcc
Confidence 9999999999999999999999999999999999999999999999999888776 6788999999999999 8999
Q ss_pred EEEEcCCCCCCCCHHHHHHHHHHhhcccCCCCceeeccccchhhhHHhHHHHHHHHHHHHHHhCccCCCCCCCCCCCCCC
Q 011989 357 YVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLAIHHGVAPLTLNLAKPDPIFN 436 (473)
Q Consensus 357 ~v~~hgtgt~~~D~~E~~a~~~~~~~~~~~~~~~v~s~k~~~Gh~~~AsG~~~li~~~~~l~~~~ipp~~~~~~~~~~~~ 436 (473)
|||+|||||+.+|.+|..++.++|+.. .++|+++|+++||+++|+|++++++++++|+++++||++|+++|+|.++
T Consensus 294 ~ve~HgtgT~~gD~~E~~al~~~fg~~----~~~v~s~K~~~GH~~gAaG~~~~i~~~l~l~~~~ipp~~~~~~~~~~~~ 369 (406)
T 2vba_A 294 YLNSHGTSTPVGDVKELAAIREVFGDK----SPAISATKAMTGHSLGAAGVQEAIYSLLMLEHGFIAPSINIEELDEQAA 369 (406)
T ss_dssp EEECCCCSCHHHHHHHHHHHHHHHTTC----CCEEECTHHHHCBCGGGHHHHHHHHHHHHHHHTEECCCCCCSSBCTTCT
T ss_pred EEEeeCccCcccCHHHHHHHHHHhCcC----CCceeCchhhhcccHHHHHHHHHHHHHHHHhcCccCCCCCCCCCCCCcc
Confidence 999999999999999999999999764 3799999999999999999999999999999999999999999999998
Q ss_pred -CCCCccccCCCCCCcEEEEeccccccceeeEEEeecC
Q 011989 437 -DNFMPLTASKDMPISAALSNSFGFGGTNASLLFTKCQ 473 (473)
Q Consensus 437 -~~~~~~~~~~~~~~~~~l~~s~g~gG~~~~~vl~~~~ 473 (473)
+++++ ...+. +++++++|||||||+|+|+||++|+
T Consensus 370 ~~~~v~-~~~~~-~~~~a~~~sfGfgG~na~~vl~~~~ 405 (406)
T 2vba_A 370 GLNIVT-ETTDR-ELTTVMSNSFGFGGTNATLVMRKLK 405 (406)
T ss_dssp TSEECC-SCEEC-CCCEEEEEEEETTTEEEEEEEECC-
T ss_pred ccccCC-cccCC-CCCEEEEcCCCCCCeEEEEEEEeCC
Confidence 88887 44444 7899999999999999999999984
|
| >1tqy_A Beta-ketoacyl synthase/acyl transferase; alpha-beta-alpha-beta-alpha, heterodimer, transferase; 2.00A {Streptomyces coelicolor} SCOP: c.95.1.1 c.95.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-75 Score=594.75 Aligned_cols=409 Identities=32% Similarity=0.528 Sum_probs=369.1
Q ss_pred CCceEEEecceecccCCCHHHHHHHHHcCCCceeeCCccccccCCCCccccccccCCcccceeEEecCCCCCCCCCcccC
Q 011989 38 LRRVVVTGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSKVAAVVPCGISSGEFNEDSW 117 (473)
Q Consensus 38 ~~~v~ItG~g~~~p~g~~~~~~~~~l~~G~s~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~~~~ 117 (473)
+++|+|||||+++|+|.+.++||++|++|++++++++.++ ...++.++++.+ + ||+.+|
T Consensus 2 ~~~vaI~G~g~~~p~g~~~~~~w~~l~~g~~~i~~~~~~~--------------~~~~~~~~~~~~-~------fd~~~~ 60 (424)
T 1tqy_A 2 KRRVVITGVGVRAPGGNGTRQFWELLTSGRTATRRISFFD--------------PSPYRSQVAAEA-D------FDPVAE 60 (424)
T ss_dssp -CCEEEEEEEEEETTEESHHHHHHHHHHTCCCEEECCSSC--------------CTTSSCCEEECC-C------CCHHHH
T ss_pred CCCEEEEeeEEECCCCCCHHHHHHHHHcCCCceeeCCCcc--------------cccCCcceeEEe-c------cCHhhc
Confidence 3689999999999999999999999999999999997644 223445566666 3 999999
Q ss_pred -CCchhhhccCHHHHHHHHHHHHHHHHcCCCCCCCCCCCceeEEEecCCCChhhHHHHHHHHH--HhccccCCCcchhhh
Q 011989 118 -LNSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMIC--EKRLRRLSPFFIPRI 194 (473)
Q Consensus 118 -~~~~~~~~~~~~~~la~~aa~~Al~dAgl~~~~~~~~~~~gvivg~~~g~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 194 (473)
+++++.+.|||+++|+++++++||+|||++++++ +..+++|++|++.++.....+++..+. .++...++|+.++..
T Consensus 61 ~i~~~~~~~~d~~~~l~l~aa~~AL~dAG~~~~~i-~~~~~gv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (424)
T 1tqy_A 61 GFGPRELDRMDRASQFAVACAREAFAASGLDPDTL-DPARVGVSLGSAVAAATSLEREYLLLSDSGRDWEVDAAWLSRHM 139 (424)
T ss_dssp TCCHHHHHHSCHHHHHHHHHHHHHHHHHTCCTTTC-CGGGEEEEEECSSTTHHHHHHHHHHHHTTTTCSSCCGGGCCTTT
T ss_pred CCCHHHHHhcCHHHHHHHHHHHHHHHHCCCCchhc-CCCceEEEEEeCCccHHHHHHHHHHHhhhccCccccChhhhccc
Confidence 9999999999999999999999999999998877 488999999999998888777777665 455566777776666
Q ss_pred hhhHHHH----HHHHhcCCCCCeeeecCCcchHHHHHHHHHHHHHcCCCCEEEEeecCCCcChHHHHHHhhhhccccccC
Q 011989 195 LINMASG----HVSMKYGFQGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYN 270 (473)
Q Consensus 195 ~~~~~a~----~ia~~lgl~Gp~~~v~~acasg~~Al~~A~~~I~~G~~d~vlv~g~d~~~~~~~~~~~~~~~~~~~~~~ 270 (473)
.++..++ +|++.||++||+++|+++|+|++.||++|+++|++|++|++||+|+|.++++..+..|...+.++.+ +
T Consensus 140 ~~~~~a~~~~~~ia~~lgl~gp~~~v~~aCsS~l~Al~~A~~~I~~G~~d~aLvgG~e~~~~~~~~~~~~~~~~ls~~-~ 218 (424)
T 1tqy_A 140 FDYLVPSVMPAEVAWAVGAEGPVTMVSTGCTSGLDSVGNAVRAIEEGSADVMFAGAADTPITPIVVACFDAIRATTAR-N 218 (424)
T ss_dssp HHHHSTTHHHHHHHHHHTCCSCEEEECCGGGHHHHHHHHHHHHHHHTSCSEEEEEEEECCCSHHHHHHHHHTTCBCCC-C
T ss_pred ccccccchhHhHHHHhcCCCCceEeecCcccHHHHHHHHHHHHHHCCCCCEEEEeeecccCCHHHHHHHHhhccccCC-C
Confidence 6665555 9999999999999999999999999999999999999999999999998889888888888888753 3
Q ss_pred CCCCCCCcCccCCCCceeeccceEEEEEccchHHHhcCCeEEEEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHHcCC
Q 011989 271 GTPQEASRPFDCGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGL 350 (473)
Q Consensus 271 ~~~~~~~~pfd~~~~G~~~geGaaavvL~~~~~A~~~g~~~~a~i~g~~~~~d~~~~~~~~~~~~~~~~a~~~al~~agl 350 (473)
..|+..|+|||.+++|+++|||+++|||+++++|+++|+++|++|.|++.++|+.+.+.|.+.+.++.++++++|+++|+
T Consensus 219 ~~p~~~~rpfd~~~~G~v~geGaaavvL~~~~~A~~~g~~i~a~I~g~~~~~dg~~~~~p~~~g~~~~~ai~~al~~agl 298 (424)
T 1tqy_A 219 DDPEHASRPFDGTRDGFVLAEGAAMFVLEDYDSALARGARIHAEISGYATRCNAYHMTGLKADGREMAETIRVALDESRT 298 (424)
T ss_dssp SCGGGCCCTTBTTCCCBCEECEEEEEEEEEHHHHHHTTCCCCEEEEEEEEEECSSCSSCCCTTCHHHHHHHHHHHHHHTC
T ss_pred CCCCCCccCCCCCCCceeeecceeEEEeccHHHHHhCCCcEEEEEeeeEEcCCCCCCCCCCCCHHHHHHHHHHHHHHcCC
Confidence 34678999999999999999999999999999999999999999999999999999888888888899999999999999
Q ss_pred CCCCccEEEEcCCCCCCCCHHHHHHHHHHhhcccCCCCceeeccccchhhhHHhHHHHHHHHHHHHHHhCccCCCCCCCC
Q 011989 351 QSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLAIHHGVAPLTLNLAK 430 (473)
Q Consensus 351 ~~~dId~v~~hgtgt~~~D~~E~~a~~~~~~~~~~~~~~~v~s~k~~~Gh~~~AsG~~~li~~~~~l~~~~ipp~~~~~~ 430 (473)
+++||||||+|+|||+.+|.+|..++.++|+... .+++|+++|+++||+++|+|++++++++++|+++.+||++|+++
T Consensus 299 ~~~dId~ve~Hgtgt~~gD~~E~~al~~~f~~~~--~~~~v~s~k~~~GH~~~AaG~~~l~~~~l~l~~~~ipp~~~~~~ 376 (424)
T 1tqy_A 299 DATDIDYINAHGSGTRQNDRHETAAYKRALGEHA--RRTPVSSIKSMVGHSLGAIGSLEIAACVLALEHGVVPPTANLRT 376 (424)
T ss_dssp CGGGCCEEECCCCCCHHHHHHHHHHHHHHTGGGG--GGSCEECTHHHHCBCTTTHHHHHHHHHHHHHHHCEECCBTTCCS
T ss_pred CHHHCCEEEecCccCcCcCHHHHHHHHHHhcccC--CCCeeeccccccccChhhhHHHHHHHHHHHHHcCCcCCCCCCCC
Confidence 9999999999999999999999999999998642 46899999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCccccCCCCCCcEEEEeccccccceeeEEEeec
Q 011989 431 PDPIFNDNFMPLTASKDMPISAALSNSFGFGGTNASLLFTKC 472 (473)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~~~~~l~~s~g~gG~~~~~vl~~~ 472 (473)
|+|.+++++++ .+.+..+.+++++|||||||+|+|+||+++
T Consensus 377 ~~p~~~~~~v~-~~~~~~~~~~a~~~sfG~GG~n~~~vl~~~ 417 (424)
T 1tqy_A 377 SDPECDLDYVP-LEARERKLRSVLTVGSGFGGFQSAMVLRDA 417 (424)
T ss_dssp BBTTBCSCCCB-SSCEECCCSEEEEEEEETTTEEEEEEEECH
T ss_pred CCCCCCcccCC-CcccCCCCCEEEEccccCCceEEEEEEccC
Confidence 99999999998 566777899999999999999999999986
|
| >2wge_A 3-oxoacyl-[acyl-carrier-protein] synthase 1; beta ketoacyl synthase I thiolactomycin, cytoplasm, transferase, acyltransferase; HET: TLM; 1.80A {Mycobacterium tuberculosis} PDB: 2wgd_A* 2wgg_A* 2wgf_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-74 Score=585.40 Aligned_cols=406 Identities=36% Similarity=0.575 Sum_probs=369.5
Q ss_pred CCceEEEecceecccCCCHHHHHHHHHcCCCceeeCCccccccCCCCccccccccCCcccceeEEecCCCCCCCCCcccC
Q 011989 38 LRRVVVTGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSKVAAVVPCGISSGEFNEDSW 117 (473)
Q Consensus 38 ~~~v~ItG~g~~~p~g~~~~~~~~~l~~G~s~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~~~~ 117 (473)
+++|+|||||+++|+|.++++||++|++|++++++++.+++.. ..++.++++++++ |+.+|
T Consensus 11 ~~~vaI~G~g~~~p~g~~~~~~w~~l~~g~~~i~~~~~~~~~~------------~~~~~~~~~~~~~-------d~~~~ 71 (416)
T 2wge_A 11 FPSVVVTAVTATTSISPDIESTWKGLLAGESGIHALEDEFVTK------------WDLAVKIGGHLKD-------PVDSH 71 (416)
T ss_dssp SCCEEEEEEEEEESSCSSHHHHHHHHHTTCCCCEECCCHHHHH------------HTCSCCEEBCCSS-------CGGGG
T ss_pred CCcEEEEeeEEECCCCCCHHHHHHHHHcCCCEEEeCCcccccc------------ccCCccEEEEeCC-------chhhh
Confidence 4689999999999999999999999999999999998543111 1345567777752 56667
Q ss_pred CCchhhhccCHHHHHHHHHHHHHHHHcCCCCCCCCCCCceeEEEecCCCChhhHHHHHHHHHHhccccCCCcchhhhhhh
Q 011989 118 LNSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILIN 197 (473)
Q Consensus 118 ~~~~~~~~~~~~~~la~~aa~~Al~dAgl~~~~~~~~~~~gvivg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (473)
+++++.+.|||+++|+++++++||+|||+ +++ +.++++|++|++.+++.....++..+..++...++|+.+++.+.+
T Consensus 72 ~~~~~~~~~d~~~~l~l~aa~~AL~dAG~--~~~-~~~~~gv~vg~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 148 (416)
T 2wge_A 72 MGRLDMRRMSYVQRMGKLLGGQLWESAGS--PEV-DPDRFAVVVGTGLGGAERIVESYDLMNAGGPRKVSPLAVQMIMPN 148 (416)
T ss_dssp CCHHHHHHSCHHHHHHHHHHHHHHHHTTC--CCC-CGGGEEEEEECCSCCCTHHHHHHHHHHHHCGGGSCTTHHHHHSTT
T ss_pred CCHHHHHhcCHHHHHHHHHHHHHHHHcCC--Ccc-CCCceEEEEeecCCcHHHHHHHHHHHHhcCcccCCchhhccccch
Confidence 99999999999999999999999999999 344 478999999999999888888888888888889999999999999
Q ss_pred HHHHHHHHhcCCCCCeeeecCCcchHHHHHHHHHHHHHcCCCCEEEEeecCCCcChHHHHHHhhhhccccccCCCCCCCC
Q 011989 198 MASGHVSMKYGFQGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEAS 277 (473)
Q Consensus 198 ~~a~~ia~~lgl~Gp~~~v~~acasg~~Al~~A~~~I~~G~~d~vlv~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (473)
..+++|++.||++||+++++++|+|++.||.+|+++|++|++|++||+|+|.++.+.....+...+.++.+ +..++..|
T Consensus 149 ~~a~~ia~~lgl~gp~~~v~~aCsS~l~Al~~A~~~I~~G~~d~~LvgG~e~~~~~~~~~~~~~~~~l~~~-~~~~~~~~ 227 (416)
T 2wge_A 149 GAAAVIGLQLGARAGVMTPVSACSSGSEAIAHAWRQIVMGDADVAVCGGVEGPIEALPIAAFSMMRAMSTR-NDEPERAS 227 (416)
T ss_dssp HHHHHHHHHHTCCSCEECCCCGGGHHHHHHHHHHHHHHTTSCSEEEEEECCCCCCHHHHHHHHTTTCBCCC-TTSGGGSC
T ss_pred hHHHHHHHHhccCCCcccccCchHHHHHHHHHHHHHHHcCCCCEEEEeeecCccchHHHHHHHhcchhhcc-ccCCcccc
Confidence 99999999999999999999999999999999999999999999999999999988888888888887643 44567899
Q ss_pred cCccCCCCceeeccceEEEEEccchHHHhcCCeEEEEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccE
Q 011989 278 RPFDCGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDY 357 (473)
Q Consensus 278 ~pfd~~~~G~~~geGaaavvL~~~~~A~~~g~~~~a~i~g~~~~~d~~~~~~~~~~~~~~~~a~~~al~~agl~~~dId~ 357 (473)
+|||.+++|+++|||++++||++++.|+++|.+++++|.|++.++|+.+++.|++...++.++++++|+++|++++||||
T Consensus 228 ~pfd~~~dg~v~geGaaavvL~~~~~A~~~g~~~~a~i~g~~~~~dg~~~~~p~~~~~~~~~ai~~al~~agl~~~dId~ 307 (416)
T 2wge_A 228 RPFDKDRDGFVFGEAGALMLIETEEHAKARGAKPLARLLGAGITSDAFHMVAPAADGVRAGRAMTRSLELAGLSPADIDH 307 (416)
T ss_dssp CTTBTTCCCBCBBCEEEEEEEEEHHHHHHTTCCCSEEEEEEEEEECCSCSSSCCTTCHHHHHHHHHHHHHHTCCGGGCCE
T ss_pred cccccCCCCccccCceEEEEECcHHHHHHCCCceEEEEEEEEEecCCCCccCCCCChHHHHHHHHHHHHHcCCCHHHCCE
Confidence 99999999999999999999999999999999999999999999999998888888889999999999999999999999
Q ss_pred EEEcCCCCCCCCHHHHHHHHHHhhcccCCCCceeeccccchhhhHHhHHHHHHHHHHHHHHhCccCCCCCCCCCCCCCCC
Q 011989 358 VNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLAIHHGVAPLTLNLAKPDPIFND 437 (473)
Q Consensus 358 v~~hgtgt~~~D~~E~~a~~~~~~~~~~~~~~~v~s~k~~~Gh~~~AsG~~~li~~~~~l~~~~ipp~~~~~~~~~~~~~ 437 (473)
||+|||||+.+|.+|.+++..+ +.. ++++++.|+++||+++|+|++++++++++|+++++||++|+++|+|.+++
T Consensus 308 ve~HgtgT~~gD~~E~~al~~~-~~~----~~~v~s~k~~~GH~~gAsG~~~~i~~~l~l~~~~ipp~~~~~~~~p~~~~ 382 (416)
T 2wge_A 308 VNAHGTATPIGDAAEANAIRVA-GCD----QAAVYAPKSALGHSIGAVGALESVLTVLTLRDGVIPPTLNYETPDPEIDL 382 (416)
T ss_dssp EECCCCCCHHHHHHHHHHHHHT-TCT----TSEEECTHHHHCBCGGGHHHHHHHHHHHHHHHTEECCCTTCCSBCTTTCC
T ss_pred EEECCCCCcCCCHHHHHHHHHh-ccC----CCCccCCcccccCcHHHHHHHHHHHHHHHHhcCCcCCCCCCCCCCCCCCc
Confidence 9999999999999999999998 432 58999999999999999999999999999999999999999999999999
Q ss_pred CCCccccCCCCCCcEEEEeccccccceeeEEEeec
Q 011989 438 NFMPLTASKDMPISAALSNSFGFGGTNASLLFTKC 472 (473)
Q Consensus 438 ~~~~~~~~~~~~~~~~l~~s~g~gG~~~~~vl~~~ 472 (473)
++++ .+.+..+++++++|||||||+|+|+||++|
T Consensus 383 ~~v~-~~~~~~~~~~a~~~sfGfGG~na~~vl~~~ 416 (416)
T 2wge_A 383 DVVA-GEPRYGDYRYAVNNSFGFGGHNVALAFGRY 416 (416)
T ss_dssp EECC-SSCEECCCCEEEEEEEETTTEEEEEEEECC
T ss_pred ccCC-CCCccCCCCEEEEeCcccCceeEEEEEEeC
Confidence 9888 555667789999999999999999999986
|
| >2gp6_A 3-oxoacyl-[acyl-carrier-protein] synthase 2; thiolase fold, structural genomics, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-73 Score=581.99 Aligned_cols=408 Identities=35% Similarity=0.541 Sum_probs=371.2
Q ss_pred CCCceEEEecceecccCCCHHHHHHHHHcCCCceeeCCccccccCCCCccccccccCCcccceeEEecCCCCCCCCCccc
Q 011989 37 PLRRVVVTGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSKVAAVVPCGISSGEFNEDS 116 (473)
Q Consensus 37 ~~~~v~ItG~g~~~p~g~~~~~~~~~l~~G~s~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~~~ 116 (473)
.+++|+|||||+++|+|.++++||++|++|++++++++.+++. ...++.++++++++ |+.+
T Consensus 26 ~~~~vaI~G~g~~~p~g~~~~~~w~~l~~g~~~i~~~~~~~~~------------~~~~~~~~~~~v~~-------d~~~ 86 (434)
T 2gp6_A 26 AFPYVVVTGIAMTTALATDAETTWKLLLDRQSGIRTLDDPFVE------------EFDLPVRIGGHLLE-------EFDH 86 (434)
T ss_dssp TSCCEEEEEEEEECSSCSSHHHHHHHHHTTCCCEEECCCHHHH------------HHCCSCCEEECCSC-------CSTT
T ss_pred CCCCEEEEeeEEeCCCCCCHHHHHHHHHcCCCeeeeCCccccc------------cccCccceeEEcCC-------chhh
Confidence 3468999999999999999999999999999999999854311 12345567777752 4556
Q ss_pred CCCchhhhccCHHHHHHHHHHHHHHHHcCCCCCCCCCCCceeEEEecCCCChhhHHHHHHHHHHhccccCCCcchhhhhh
Q 011989 117 WLNSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILI 196 (473)
Q Consensus 117 ~~~~~~~~~~~~~~~la~~aa~~Al~dAgl~~~~~~~~~~~gvivg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (473)
|+++++.+.|||+++|+++++++||+|||+ +++ ++++++|++|++.+++.....++..+..++...++|+.+++.+.
T Consensus 87 ~~~~~~~~~~d~~~~l~l~aa~~ALedAG~--~~~-~~~~igv~vgt~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 163 (434)
T 2gp6_A 87 QLTRIELRRMGYLQRMSTVLSRRLWENAGS--PEV-DTNRLMVSIGTGLGSAEELVFSYDDMRARGMKAVSPLTVQKYMP 163 (434)
T ss_dssp SSCHHHHHTCCHHHHHHHHHHHHHHHHTTC--CCC-CTTSEEEEEECSSCSCHHHHHHHHHHTTSCSSSSCTTHHHHHST
T ss_pred hCCHHHHHhCCHHHHHHHHHHHHHHHhcCC--Ccc-CCCceEEEEccccccHHHHHHHHHHHHhcCccccChhhhhccch
Confidence 689999999999999999999999999999 334 47899999999999988888888888778888899999999999
Q ss_pred hHHHHHHHHhcCCCCCeeeecCCcchHHHHHHHHHHHHHcCCCCEEEEeecCCCcChHHHHHHhhhh-ccccccCCCCCC
Q 011989 197 NMASGHVSMKYGFQGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSR-ALTTKYNGTPQE 275 (473)
Q Consensus 197 ~~~a~~ia~~lgl~Gp~~~v~~acasg~~Al~~A~~~I~~G~~d~vlv~g~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 275 (473)
+.++++|++.||++||+++|+++|+|++.||.+|+++|++|++|++||+|+|.++.+..+..+...+ .++.. +..++.
T Consensus 164 ~~~a~~is~~lgl~Gp~~~v~~aCsS~l~Al~~A~~~I~~G~~d~aLvgG~e~~~~~~~~~~~~~~~~~ls~~-~~~p~~ 242 (434)
T 2gp6_A 164 NGAAAAVGLERHAKAGVMTPVSACASGAEAIARAWQQIVLGEADAAICGGVETRIEAVPIAGFAQMRIVMSTN-NDDPAG 242 (434)
T ss_dssp THHHHHHHHHSCCCSCEECEECGGGHHHHHHHHHHHHHHHTSCSEEEEEEECCCCCHHHHHHHHTTTSSCCCC-TTCTTT
T ss_pred hhHHHHHhhhhcCCCCeEEeCCCCcHHHHHHHHHHHHHHcCCCCEEEEeeeccccCHHHHHHHHHHHHHhcCC-CCCCCC
Confidence 9999999999999999999999999999999999999999999999999999999988888888888 55543 345678
Q ss_pred CCcCccCCCCceeeccceEEEEEccchHHHhcCCeEEEEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCc
Q 011989 276 ASRPFDCGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQV 355 (473)
Q Consensus 276 ~~~pfd~~~~G~~~geGaaavvL~~~~~A~~~g~~~~a~i~g~~~~~d~~~~~~~~~~~~~~~~a~~~al~~agl~~~dI 355 (473)
.|+|||.+++|+++|||++++||++++.|+++|.+++++|.|++.++|+.+++.|++...++.++++++|+++|++++||
T Consensus 243 ~~~pfd~~~~g~v~gdGAaavvL~~~~~A~~~g~~i~a~I~g~~~~~Dg~~~~~p~~~~~~~~~ai~~al~~Agl~~~dI 322 (434)
T 2gp6_A 243 ACRPFDRDRDGFVFGEGGALLLIETEEHAKARGANILARIMGASITSDGFHMVAPDPNGERAGHAITRAIQLAGLAPGDI 322 (434)
T ss_dssp SCCSSBTTCCCCCBBCCEEEEEEEEHHHHHTTTCCCCEEEEEEEEEECCSCSSSCCTTCHHHHHHHHHHHHHTTCCTTTE
T ss_pred ceecccccCCCcceecceEEEEeCcHHHHHHCCCceEEEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHHcCCCHHHc
Confidence 99999999999999999999999999999999999999999999999999988888888899999999999999999999
Q ss_pred cEEEEcCCCCCCCCHHHHHHHHHHhhcccCCCCceeeccccchhhhHHhHHHHHHHHHHHHHHhCccCCCCCCCCCCCCC
Q 011989 356 DYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLAIHHGVAPLTLNLAKPDPIF 435 (473)
Q Consensus 356 d~v~~hgtgt~~~D~~E~~a~~~~~~~~~~~~~~~v~s~k~~~Gh~~~AsG~~~li~~~~~l~~~~ipp~~~~~~~~~~~ 435 (473)
|||++|||||+.+|.+|..++.++|+.. ++++++.|.++||+++|+|++++++++++|+++++||++|+++|+|.+
T Consensus 323 d~ve~Hgtgt~~~D~~E~~al~~~fg~~----~~~v~s~k~~~GH~~gAaG~~~~i~~~~~l~~~~ipp~~~~~~~~p~~ 398 (434)
T 2gp6_A 323 DHVNAHATGTQVGDLAEGRAINNALGGN----RPAVYAPKSALGHSVGAVGAVESILTVLALRDQVIPPTLNLVNLDPEI 398 (434)
T ss_dssp EEEECCCCSCHHHHHHHHHHHHHHHTTC----CCEECCTHHHHCBCTTTHHHHHHHHHHHHHHHSCCCCCSSCSSBCTTC
T ss_pred CEEEEeCCcCccchHHHHHHHHHHhccC----CCCcccchhhhcCchhhhHHHHHHHHHHHHhcCccCCCCCCCCCCCCC
Confidence 9999999999999999999999999753 689999999999999999999999999999999999999999999999
Q ss_pred CCCCCccccCCCCCCcEEEEeccccccceeeEEEeec
Q 011989 436 NDNFMPLTASKDMPISAALSNSFGFGGTNASLLFTKC 472 (473)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~l~~s~g~gG~~~~~vl~~~ 472 (473)
++++++ .+.+..+++++++|||||||+|+|+||++|
T Consensus 399 ~~~~v~-~~~~~~~~~~a~~~sfGfGG~na~~vl~~~ 434 (434)
T 2gp6_A 399 DLDVVA-GEPRPGNYRYAINNSFGFGGHNVAIAFGRY 434 (434)
T ss_dssp CCEECC-SSCCCSCCCEEEEEEEETTTEEEEEEEECC
T ss_pred CccccC-CCccCCCCCEEEEeCCcCCCeeEEEEEEeC
Confidence 999888 566677899999999999999999999986
|
| >3hhd_A Fatty acid synthase; transferase, multienzyme, megasynthase, fatty acid synthesis, acetylation, cytoplasm, fatty acid biosynthesis, hydrolase; 2.15A {Homo sapiens} PDB: 2jfk_A* 2jfd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-70 Score=602.99 Aligned_cols=400 Identities=21% Similarity=0.333 Sum_probs=351.9
Q ss_pred CCceEEEecceecccCCCHHHHHHHHHcCCCceeeCCccccccCCCCccccccccCCcccceeEEecCCCCCCCCCcccC
Q 011989 38 LRRVVVTGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSKVAAVVPCGISSGEFNEDSW 117 (473)
Q Consensus 38 ~~~v~ItG~g~~~p~g~~~~~~~~~l~~G~s~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~~~~ 117 (473)
+++|+||||||++|+|.++++||++|.+|++.+++.+ .+|+...|+ . ....+.+.+ ...||+.+|
T Consensus 3 ~~~IaIvGmg~r~P~~~~~~~~W~~l~~g~~~~~~~~-~~~~~~~~~----------~-~~~~g~~~~---~~~FD~~~f 67 (965)
T 3hhd_A 3 GEEVVIAGMSGKLPESENLQEFWDNLIGGVDMVTDDD-RRWKAGLYG----------L-PRRSGKLKD---LSRFDASFF 67 (965)
T ss_dssp CCCEEEEEEEEEBTTBSSHHHHHHHHHTTCCCEECSS-SSSCTTGGG----------C-CSCEECCSC---SSCCCTTTT
T ss_pred CCCEEEEeeeEECCCCCCHHHHHHHHHcCCCcccCCC-ccccccccc----------C-cccccccCC---hhhcChhhc
Confidence 4789999999999999999999999999999999875 455543221 1 122344543 456999999
Q ss_pred -CCchhhhccCHHHHHHHHHHHHHHHHcCCCCCCCCCCCceeEEEecCCCChhhHHHHHHHHHHhccccCCCcchhhhhh
Q 011989 118 -LNSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILI 196 (473)
Q Consensus 118 -~~~~~~~~~~~~~~la~~aa~~Al~dAgl~~~~~~~~~~~gvivg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (473)
+++++.+.|||+++|+++++++||+|||++++++ +..++||++|++.+++. .........+.++.+++...
T Consensus 68 ~i~~~ea~~mDp~~rL~leaa~eALedAGi~~~~i-~~~~~Gv~vG~~~~d~~-------~~~~~~~~~~~~~~~~g~~~ 139 (965)
T 3hhd_A 68 GVHPKQAHTMDPQLRLLLEVTYEAIVDGGINPDSL-RGTHTGVWVGVSGSETS-------EALSRDPETLVGYSMVGCQR 139 (965)
T ss_dssp TCCHHHHHTSCHHHHHHHHHHHHHHHHTTCCGGGG-TTSCCEEEEEECCCHHH-------HHHTSCTTTCCTHHHHHHST
T ss_pred CCCHHHHhhcCHHHHHHHHHHHHHHHHcCCChHHc-CCceeEEEEeccchhHH-------HHHhcCccccCccccccccc
Confidence 9999999999999999999999999999998887 48899999998765432 22334566778888889999
Q ss_pred hHHHHHHHHhcCCCCCeeeecCCcchHHHHHHHHHHHHHcCCCCEEEEeecCCCcChHHHHHHhhhhccccccCCCCCCC
Q 011989 197 NMASGHVSMKYGFQGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEA 276 (473)
Q Consensus 197 ~~~a~~ia~~lgl~Gp~~~v~~acasg~~Al~~A~~~I~~G~~d~vlv~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (473)
+.++++|++.||++||+++|+++|+|++.||++|+++|++|+||++||+|+|.++++.....+...+.++ +++.
T Consensus 140 ~~~a~ris~~lgl~GPs~tvdtACSSsl~Al~~A~~~I~~G~~d~aLagGv~~~~~p~~~~~~~~~~~ls------~~g~ 213 (965)
T 3hhd_A 140 AMMANRLSFFFDFRGPSIALDTACSSSLMALQNAYQAIHSGQCPAAIVGGINVLLKPNTSVQFLRLGMLS------PEGT 213 (965)
T ss_dssp THHHHHHHHHHTCCSCEEEEECGGGHHHHHHHHHHHHHHTTSCSEEEEEEEECCCCHHHHHHHHHHTCBC------TTCC
T ss_pred chHHHHHHHHhCCCCCeeeecCchHHHHHHHHHHHHHHHcCCCCEEEEeeeccccCHHHHHHHHhccCcC------CCCc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999988 6689
Q ss_pred CcCccCCCCceeeccceEEEEEccchHHHhcCCeEEEEEEEEEEecCCCC-CCCCCCChHHHHHHHHHHHHHcCCCCCCc
Q 011989 277 SRPFDCGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHH-ITQPHIDGKGAILAMTRALKQSGLQSHQV 355 (473)
Q Consensus 277 ~~pfd~~~~G~~~geGaaavvL~~~~~A~~~g~~~~a~i~g~~~~~d~~~-~~~~~~~~~~~~~a~~~al~~agl~~~dI 355 (473)
|+|||.+++|+++|||+++|||+++++|+ +||++|+|++.++|+.+ .....+...++.++++++|++||++|+||
T Consensus 214 ~~~Fd~~adG~~~gEGagavvL~~l~~A~----~i~a~I~g~~~n~dg~~~~~~t~P~~~~q~~~i~~Al~~Agl~p~dI 289 (965)
T 3hhd_A 214 CKAFDTAGNGYCRSEGVVAVLLTKKSLAR----RVYATILNAGTNTDGFKEQGVTFPSGDIQEQLIRSLYQSAGVAPESF 289 (965)
T ss_dssp CCTTBTTCCSBCBBCEEEEEEEEEGGGCS----SCSEEEEEEEEEECCCCTTCTTSCCHHHHHHHHHHHHHHTTCCGGGE
T ss_pred cccchhccCCccccceEEEEEEecHHHcC----cccEEEEeeeccCCCCCCCCCcCCCHHHHHHHHHHHHHHhCCCHHHh
Confidence 99999999999999999999999999885 48999999999999975 33344567888999999999999999999
Q ss_pred cEEEEcCCCCCCCCHHHHHHHHHHhhcccCCCCceeeccccchhhhHHhHHHHHHHHHHHHHHhCccCCCCCCCCCCCCC
Q 011989 356 DYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLAIHHGVAPLTLNLAKPDPIF 435 (473)
Q Consensus 356 d~v~~hgtgt~~~D~~E~~a~~~~~~~~~~~~~~~v~s~k~~~Gh~~~AsG~~~li~~~~~l~~~~ipp~~~~~~~~~~~ 435 (473)
||||+|||||++||++|..++.++|+.. ...+++|+++|+++||+++|+|++++++++++|++++|||++|+++|+|.+
T Consensus 290 dyvEaHgTgT~~gD~~E~~Al~~~f~~~-~~~~~~vgs~Ks~iGH~~~AaG~~~lik~~l~l~~~~ipp~~~~~~~np~i 368 (965)
T 3hhd_A 290 EYIEAHGTGTKVGDPQELNGITRALCAT-RQEPLLIGSTKSNMGHPEPASGLAALAKVLLSLEHGLWAPNLHFHSPNPEI 368 (965)
T ss_dssp EEEECCCCCCTTHHHHHHHHHHHHHCSS-CSSCEEEECTHHHHCBCGGGHHHHHHHHHHHHHHHTEECCCSSCCSBCTTC
T ss_pred ccccccCCCCCCCCHHHHHHHHHHhccc-CCCceeeeccccccccchhhhhHHHHHHHHHHHhcCCcCCccCCCCCCccC
Confidence 9999999999999999999999999854 235799999999999999999999999999999999999999999999998
Q ss_pred CC----C-CCccccCCCCCCcEEEEeccccccceeeEEEeec
Q 011989 436 ND----N-FMPLTASKDMPISAALSNSFGFGGTNASLLFTKC 472 (473)
Q Consensus 436 ~~----~-~~~~~~~~~~~~~~~l~~s~g~gG~~~~~vl~~~ 472 (473)
++ . .++ .++++++.+++++|||||||+|+|+||+++
T Consensus 369 ~~~~~~~~~v~-~~~~~~~~~~a~v~sfG~gG~Nah~il~~~ 409 (965)
T 3hhd_A 369 PALLDGRLQVV-DQPLPVRGGNVGINSFGFGGSNVHIILRPN 409 (965)
T ss_dssp HHHHHTSEEEC-CSCEECCSCEEEEEEECTTSEEEEEEEEEC
T ss_pred cccccCceeec-CCCccCCCCeEEEecccCCCceEEEEeccC
Confidence 62 1 233 455666777999999999999999999986
|
| >2qo3_A Eryaii erythromycin polyketide synthase modules 3; ketosynthase, acyltransferase, phosphopantetheine, transfera; 2.59A {Saccharopolyspora erythraea} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-70 Score=598.99 Aligned_cols=415 Identities=23% Similarity=0.363 Sum_probs=363.3
Q ss_pred CCceEEEecceecccC-CCHHHHHHHHHcCCCceeeCCccc-cccCC-CCccccccccCCcccceeEEecCCCCCCCCCc
Q 011989 38 LRRVVVTGIGMVTPLG-CGAETTWRRLIVGECGIREITPED-LKMGN-FDRETQLHAFGQLTSKVAAVVPCGISSGEFNE 114 (473)
Q Consensus 38 ~~~v~ItG~g~~~p~g-~~~~~~~~~l~~G~s~i~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~ 114 (473)
.++|+||||||++|+| .++++||++|++|++.+++++..+ |+.+. |+++.. ..+..+.+.++++++ ...||+
T Consensus 5 ~~~iaIvG~~~~~P~g~~~~~~~w~~L~~g~~~~~~~p~~r~~~~~~~~~~~~~--~~~~~~~~~~~~l~~---~~~FD~ 79 (915)
T 2qo3_A 5 SDPIAIVSMACRLPGGVNTPQRLWELLREGGETLSGFPTDRGWDLARLHHPDPD--NPGTSYVDKGGFLDD---AAGFDA 79 (915)
T ss_dssp CCCEEEEEEEEECSTTCCSHHHHHHHHHTTCCCCEECCSSSCCCHHHHBCSCTT--STTCBSCCEEBCCSC---SSEECH
T ss_pred CCCEEEEeeEEECCCCCCCHHHHHHHHHcCCCcccCCCccccCChhhccCcccc--cCCCcccceeEEeCC---ccccCH
Confidence 4679999999999999 899999999999999999999877 75433 233221 123455677888875 456999
Q ss_pred ccC-CCchhhhccCHHHHHHHHHHHHHHHHcCCCCCCCCCCCceeEEEecCCCChhhHHHHHHHHHHhccccCCCcchhh
Q 011989 115 DSW-LNSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPR 193 (473)
Q Consensus 115 ~~~-~~~~~~~~~~~~~~la~~aa~~Al~dAgl~~~~~~~~~~~gvivg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (473)
.+| +++++.+.|||+++|+++++++||+|||++++++ +..++|||+|++.+++.... .....++++.+++
T Consensus 80 ~~f~i~~~ea~~mdp~~rL~leaa~eALedAGi~~~~i-~~~~~gV~vG~~~~~~~~~~--------~~~~~~~~~~~~g 150 (915)
T 2qo3_A 80 EFFGVSPREAAAMDPQQRLLLETSWELVENAGIDPHSL-RGTATGVFLGVAKFGYGEDT--------AAAEDVEGYSVTG 150 (915)
T ss_dssp HHHTCCHHHHHTSCHHHHHHHHHHHHHHHHTTCCGGGG-TTBCCEEEEECCCCCTTTTC--------C---CTTCHHHHT
T ss_pred hhcCCCHHHHHhCCHHHHHHHHHHHHHHHHcCCChHHc-CCcceEEEEEecCchHHhhh--------ccccccccccccc
Confidence 999 9999999999999999999999999999998877 47899999999876654221 1233567777888
Q ss_pred hhhhHHHHHHHHhcCCCCCeeeecCCcchHHHHHHHHHHHHHcCCCCEEEEeecCCCcChHHHHHHhhhhccccccCCCC
Q 011989 194 ILINMASGHVSMKYGFQGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTP 273 (473)
Q Consensus 194 ~~~~~~a~~ia~~lgl~Gp~~~v~~acasg~~Al~~A~~~I~~G~~d~vlv~g~d~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (473)
...+.++++|++.||++||+++|+++|+|++.||++|+++|++|+||++||+|+|.++.+..+..+...+.++ +
T Consensus 151 ~~~~~~a~ris~~lgl~Gps~tv~taCsSsl~Al~~A~~~I~~G~~d~aLvgGve~~~~p~~~~~~~~~~~ls------~ 224 (915)
T 2qo3_A 151 VAPAVASGRISYTMGLEGPSISVDTACSSSLVALHLAVESLRKGESSMAVVGGAAVMATPGVFVDFSRQRALA------A 224 (915)
T ss_dssp TCHHHHHHHHHHHHTBCSCEEEEECGGGHHHHHHHHHHHHHHTTSCSSEEEEEEECCSSTHHHHHHHTTTCBC------S
T ss_pred ccccHHHHHHHHHhCCCCCEEEECCCCHHHHHHHHHHHHHHHcCCCCEEEEeEehhhcCHHHHHHHhhhcccC------C
Confidence 8889999999999999999999999999999999999999999999999999999999998888888888887 5
Q ss_pred CCCCcCccCCCCceeeccceEEEEEccchHHHhcCCeEEEEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHHcCCCCC
Q 011989 274 QEASRPFDCGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSH 353 (473)
Q Consensus 274 ~~~~~pfd~~~~G~~~geGaaavvL~~~~~A~~~g~~~~a~i~g~~~~~d~~~~~~~~~~~~~~~~a~~~al~~agl~~~ 353 (473)
++.|+|||.+++|+++|||+++|||+++++|+++|++|+++|+|++.++|+.+...+.+...++.++++++|+++|++|+
T Consensus 225 ~g~~~~Fd~~adG~v~gEGagavVL~~~~~A~~~g~~i~a~I~G~~~~~dg~~~~~~~p~~~~~~~~i~~Al~~Agl~p~ 304 (915)
T 2qo3_A 225 DGRSKAFGAGADGFGFSEGVTLVLLERLSEARRNGHEVLAVVRGSALNQDGASNGLSAPSGPAQRRVIRQALESCGLEPG 304 (915)
T ss_dssp SCCCCTTBTTCCCBCBBCEEEEEEEEEHHHHHHTTCCCCEEEEEEEEEECCSCSSTTCCCHHHHHHHHHHHHHHTTCCGG
T ss_pred CCCcccccCCCCceeecCceEEEEEeEhHHhhhCCCCeEEEEEEEEEecCCCccCCCCCCHHHHHHHHHHHHHHcCCCHH
Confidence 68999999999999999999999999999999999999999999999999988776777888999999999999999999
Q ss_pred CccEEEEcCCCCCCCCHHHHHHHHHHhhccc-CCCCceeeccccchhhhHHhHHHHHHHHHHHHHHhCccCCCCCCCCCC
Q 011989 354 QVDYVNAHATSTPLGDTVEATAIRTVFSDHA-TSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLAIHHGVAPLTLNLAKPD 432 (473)
Q Consensus 354 dId~v~~hgtgt~~~D~~E~~a~~~~~~~~~-~~~~~~v~s~k~~~Gh~~~AsG~~~li~~~~~l~~~~ipp~~~~~~~~ 432 (473)
||||||+|||||+++|++|..++.++|+... ...+++++++|+++||+++|+|++++++++++|+++.|||++|+++|+
T Consensus 305 dId~ve~HgtgT~~gD~~E~~al~~~f~~~~~~~~~~~vgs~K~~iGH~~~AaG~~~lik~~l~L~~~~ipp~~~~~~~~ 384 (915)
T 2qo3_A 305 DVDAVEAHGTGTALGDPIEANALLDTYGRDRDADRPLWLGSVKSNIGHTQAAAGVTGLLKVVLALRNGELPATLHVEEPT 384 (915)
T ss_dssp GCCEEECCCCCCTTTHHHHHHHHHHHTSSSCCTTSCEEEECTHHHHCBCGGGHHHHHHHHHHHHHHHTEECCCSSCSSBC
T ss_pred HCcEEEecCCCCccCCHHHHHHHHHHhccccCCCCcccccCcccceeCCccccchHHHHHHHHHHhcCCCCCCCCCCCCC
Confidence 9999999999999999999999999998532 235789999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCcc---c----cCCCCCCcEEEEeccccccceeeEEEeec
Q 011989 433 PIFNDNFMPL---T----ASKDMPISAALSNSFGFGGTNASLLFTKC 472 (473)
Q Consensus 433 ~~~~~~~~~~---~----~~~~~~~~~~l~~s~g~gG~~~~~vl~~~ 472 (473)
|.++++..++ . .++...++++++|||||||+|+|+||+++
T Consensus 385 p~~~~~~~~~~~~~~~~~w~~~~~~r~a~v~sfG~gG~Nah~vl~~~ 431 (915)
T 2qo3_A 385 PHVDWSSGGVALLAGNQPWRRGERTRRAAVSAFGISGTNAHVIVEEA 431 (915)
T ss_dssp TTSCCSSSSEEECSSCEECCSSSSCCEEEEEEECTTSEEEEEEEEEC
T ss_pred cccccccCceeeecCCcccccCCCCcEEEEeeecCCCceEEEEEeec
Confidence 9998752221 1 11234579999999999999999999986
|
| >2hg4_A DEBS, 6-deoxyerythronolide B synthase; ketosynthase, acyltransferase, module 5, transferase; 2.73A {Saccharopolyspora erythraea} | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-70 Score=598.22 Aligned_cols=404 Identities=25% Similarity=0.399 Sum_probs=355.8
Q ss_pred CceEEEecceecccC-CCHHHHHHHHHcCCCceeeCCccc-cccCCCCccccccccCCcccceeEEecCCCCCCCCCccc
Q 011989 39 RRVVVTGIGMVTPLG-CGAETTWRRLIVGECGIREITPED-LKMGNFDRETQLHAFGQLTSKVAAVVPCGISSGEFNEDS 116 (473)
Q Consensus 39 ~~v~ItG~g~~~p~g-~~~~~~~~~l~~G~s~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~~~ 116 (473)
++|+||||||++|+| .++++||++|++|++++++++..+ |.. ....++++++++ .+.||+.+
T Consensus 39 ~~iaIvG~~~~~Pgg~~~~~~~w~~L~~g~~~i~~~p~~r~~~~-------------~~~~~~~~~l~~---~~~fD~~~ 102 (917)
T 2hg4_A 39 EPIAIVGMACRFPGDVDSPESFWEFVSGGGDAIAEAPADRGWEP-------------DPDARLGGMLAA---AGDFDAGF 102 (917)
T ss_dssp CCEEEEEEEEEBTTTBCSHHHHHHHHHTTCCCCEECCGGGCCCC-------------CSSCCEEBCCTT---TTEECTGG
T ss_pred CCEEEEeceEECCCCCCCHHHHHHHHHcCCCccccCCcccccCC-------------CCCcceeeEecC---ccccChhh
Confidence 679999999999988 679999999999999999998876 521 122567888864 45699999
Q ss_pred C-CCchhhhccCHHHHHHHHHHHHHHHHcCCCCCCCCCCCceeEEEecCCCChhhHHHHHHHHHHhccccCCCcchhhhh
Q 011989 117 W-LNSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRIL 195 (473)
Q Consensus 117 ~-~~~~~~~~~~~~~~la~~aa~~Al~dAgl~~~~~~~~~~~gvivg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (473)
| +++++.+.|||+++|+++++++||+|||+++.++ +..++|||+|++..++.... ......+.++.+++..
T Consensus 103 f~i~~~ea~~mdp~~rl~leaa~eALedAGi~~~~i-~~~~~gV~vG~~~~d~~~~~-------~~~~~~~~~~~~~g~~ 174 (917)
T 2hg4_A 103 FGISPREALAMDPQQRIMLEISWEALERAGHDPVSL-RGSATGVFTGVGTVDYGPRP-------DEAPDEVLGYVGTGTA 174 (917)
T ss_dssp GTCCHHHHHHSCHHHHHHHHHHHHHHHHTTCCGGGG-TTSCEEEEEEECCCCCSCCT-------TSSCGGGGGGHHHHHC
T ss_pred cCCCHHHHHhcCHHHHHHHHHHHHHHHHcCCChHHc-CCcceEEEEEeCCchhhhhh-------hcCccccCcccccccc
Confidence 9 9999999999999999999999999999998877 47899999999876543211 1234456677778888
Q ss_pred hhHHHHHHHHhcCCCCCeeeecCCcchHHHHHHHHHHHHHcCCCCEEEEeecCCCcChHHHHHHhhhhccccccCCCCCC
Q 011989 196 INMASGHVSMKYGFQGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQE 275 (473)
Q Consensus 196 ~~~~a~~ia~~lgl~Gp~~~v~~acasg~~Al~~A~~~I~~G~~d~vlv~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (473)
.+.++++|++.||++||+++|+++|+|++.||++|+++|++|+||++||+|+|.++.+.....+...+.++ +++
T Consensus 175 ~~~~a~ris~~lgl~Gps~tv~taCsSsl~Al~~A~~~I~~G~~d~aLvgGv~~~~~p~~~~~~~~~~~ls------~~g 248 (917)
T 2hg4_A 175 SSVASGRVAYCLGLEGPAMTVDTACSSGLTALHLAMESLRRDECGLALAGGVTVMSSPGAFTEFRSQGGLA------ADG 248 (917)
T ss_dssp HHHHHHHHHHHHTCCSCEEEEECGGGHHHHHHHHHHHHHHTTSCSEEEEEEEECCCSTHHHHHHTTSSCBC------TTS
T ss_pred cchHHHHHHHhcCCCCCeEeecCCcHHHHHHHHHHHHHHHcCCCCEEEEeEeccccChhhhHhhhhccCcC------Ccc
Confidence 89999999999999999999999999999999999999999999999999999999998888888888877 568
Q ss_pred CCcCccCCCCceeeccceEEEEEccchHHHhcCCeEEEEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCc
Q 011989 276 ASRPFDCGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQV 355 (473)
Q Consensus 276 ~~~pfd~~~~G~~~geGaaavvL~~~~~A~~~g~~~~a~i~g~~~~~d~~~~~~~~~~~~~~~~a~~~al~~agl~~~dI 355 (473)
.|+|||.+++|+++|||+++|||+++++|+++|++|+++|+|++.++|+.+...+.+...++.++++++|+++|++|+||
T Consensus 249 ~~~pFd~~adG~~~gEGagavVL~~l~~A~~~g~~i~a~I~G~~~~~dg~~~~~~~P~~~~q~~ai~~Al~~Agl~p~dI 328 (917)
T 2hg4_A 249 RCKPFSKAADGFGLAEGAGVLVLQRLSAARREGRPVLAVLRGSAVNQDGASNGLTAPSGPAQQRVIRRALENAGVRAGDV 328 (917)
T ss_dssp CCCTTBTTCCCBCBBCEEEEEEEEEHHHHHHTTCCCCEEEEEEEEEECCSCSSSSCCCHHHHHHHHHHHHHHHTCCGGGC
T ss_pred ccCcccccccCCCCcceEEEEEEeeHHHHHhCCCCeEEEEEEEEEecCCCccCCCCCCHHHHHHHHHHHHHHcCCCHHHC
Confidence 99999999999999999999999999999999999999999999999998876667778899999999999999999999
Q ss_pred cEEEEcCCCCCCCCHHHHHHHHHHhhccc-CCCCceeeccccchhhhHHhHHHHHHHHHHHHHHhCccCCCCCCCCCCCC
Q 011989 356 DYVNAHATSTPLGDTVEATAIRTVFSDHA-TSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLAIHHGVAPLTLNLAKPDPI 434 (473)
Q Consensus 356 d~v~~hgtgt~~~D~~E~~a~~~~~~~~~-~~~~~~v~s~k~~~Gh~~~AsG~~~li~~~~~l~~~~ipp~~~~~~~~~~ 434 (473)
||||+|||||+.+|++|..++.++|+... ...+++++++|+++||+++|+|++++++++++|++++|||++|+++|+|.
T Consensus 329 d~veaHgtgT~~gD~~E~~al~~~fg~~~~~~~~~~vgs~K~~iGH~~~AaG~~~lik~vl~L~~~~ipp~~~~~~~~p~ 408 (917)
T 2hg4_A 329 DYVEAHGTGTRLGDPIEVHALLSTYGAERDPDDPLWIGSVKSNIGHTQAAAGVAGVMKAVLALRHGEMPRTLHFDEPSPQ 408 (917)
T ss_dssp CEEECCCCCCTTHHHHHHHHHHTTTTTSSCTTSCCEEECTHHHHCBCGGGTTHHHHHHHHHHHHHTEECCCTTCCSBCTT
T ss_pred CEEeeccCCCccCcHHHHHHHHHHhccccCCCCceeccCcccceecchhhhHHHHHHHHHHHHhcCCcCCCCCCCCCCcc
Confidence 99999999999999999999999998632 23578999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcc---ccCC----CCCCcEEEEeccccccceeeEEEeec
Q 011989 435 FNDNFMPL---TASK----DMPISAALSNSFGFGGTNASLLFTKC 472 (473)
Q Consensus 435 ~~~~~~~~---~~~~----~~~~~~~l~~s~g~gG~~~~~vl~~~ 472 (473)
++++..++ .+.+ ...++++++|||||||+|+|+||+++
T Consensus 409 i~~~~~~~~v~~~~~~w~~~~~~r~a~v~sfG~gG~Nah~vl~~~ 453 (917)
T 2hg4_A 409 IEWDLGAVSVVSQARSWPAGERPRRAGVSSFGISGTNAHVIVEEA 453 (917)
T ss_dssp SCC---CCEECCSCEECCCCSSCCEEEEEEECTTSEEEEEEEEEC
T ss_pred CCccccceeecCCcccCCCCCCCCEEEEeeecCCCceEEEEeccC
Confidence 98764221 2222 23579999999999999999999986
|
| >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-68 Score=632.06 Aligned_cols=400 Identities=22% Similarity=0.322 Sum_probs=351.7
Q ss_pred CCceEEEecceecccCCCHHHHHHHHHcCCCceeeCCccccccCCCCccccccccCCcccceeEEecCCCCCCCCCcccC
Q 011989 38 LRRVVVTGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSKVAAVVPCGISSGEFNEDSW 117 (473)
Q Consensus 38 ~~~v~ItG~g~~~p~g~~~~~~~~~l~~G~s~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~~~~ 117 (473)
|++|+||||||++|+|.++++||++|.+|++++++.+ .+|+...|+ ....++++++ ...||+.+|
T Consensus 1 m~~iaI~G~~~~~p~~~~~~~~w~~l~~g~~~~~~~~-~~~~~~~~~-----------~~~~~g~~~~---~~~fd~~~f 65 (2512)
T 2vz8_A 1 MEEVVIAGMSGKLPESENLEEFWANLIGGVDMVTADD-RRWKAGLYG-----------LPRRMGKLKD---LSRFDASFF 65 (2512)
T ss_dssp CCCEEEEEEEEEBTTBSSHHHHHHHHHTTCCCEEECS-SSSCTTGGG-----------CCSEEECCSC---SSCCCTTTT
T ss_pred CCCEEEEeeeeeCCCCCCHHHHHHHHHcCCccccCCC-ccccccccc-----------CcccceecCC---cccCCHhhc
Confidence 3789999999999999999999999999999999964 456533211 1234566654 456999999
Q ss_pred -CCchhhhccCHHHHHHHHHHHHHHHHcCCCCCCCCCCCceeEEEecCCCChhhHHHHHHHHHHhccccCCCcchhhhhh
Q 011989 118 -LNSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILI 196 (473)
Q Consensus 118 -~~~~~~~~~~~~~~la~~aa~~Al~dAgl~~~~~~~~~~~gvivg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (473)
+++++++.|||+++|+++++++||+|||+++.++ +..++|||+|++.+++.. ........++++.+++...
T Consensus 66 ~i~~~ea~~~dpq~rl~l~~~~eAle~Ag~~~~~~-~~~~~gv~~G~~~~~~~~-------~~~~~~~~~~~~~~~g~~~ 137 (2512)
T 2vz8_A 66 GVHSKQANTMDPQLRMLLEVTYEAIVDGGINPASL-RGTSTGVWVGVSSSDASE-------ALSRDPETLVGYSMIGCQR 137 (2512)
T ss_dssp TCCHHHHHTSCHHHHHHHHHHHHHHGGGTCCGGGG-TTCSCEEEEEECCCHHHH-------HTTSCTTTSCGGGGGGTST
T ss_pred CCCHHHHHhcCHHHHHHHHHHHHHHHHCCCChhhc-CCCCeEEEEEeccHHHHH-------HHhcCccccCcceecccch
Confidence 9999999999999999999999999999987766 478999999998754321 2233456678888999999
Q ss_pred hHHHHHHHHhcCCCCCeeeecCCcchHHHHHHHHHHHHHcCCCCEEEEeecCCCcChHHHHHHhhhhccccccCCCCCCC
Q 011989 197 NMASGHVSMKYGFQGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEA 276 (473)
Q Consensus 197 ~~~a~~ia~~lgl~Gp~~~v~~acasg~~Al~~A~~~I~~G~~d~vlv~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (473)
++++++|++.|||+||+++|+++|+|++.||++|+++|++|+||++||+|++.+++|..+..|...+.++ +++.
T Consensus 138 ~~~a~ris~~~~l~Gps~tv~tACsSsl~Al~~A~~~l~~g~~d~al~gG~~~~~~p~~~~~~~~~~~ls------~~g~ 211 (2512)
T 2vz8_A 138 AMMANRLSFFFDFKGPSITIDTACSSSLLALQSAYQAIRGGECSAAVVGGLNVLLKPNSSLQFMKLGMLS------QDGT 211 (2512)
T ss_dssp THHHHHHHHHHTCCSCEEEEECTTSTHHHHHHHHHHHHHTSSCSEEEEEEEECCCCHHHHHHHHHTTCBC------TTCS
T ss_pred hHHHHHHHHHhCCCCCceeeccHhHHHHHHHHHHHHHHHcCCCCeeEEeEeccccCHHHHHHHccCCCCC------CCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998 6699
Q ss_pred CcCccCCCCceeeccceEEEEEccchHHHhcCCeEEEEEEEEEEecCCCC-CCCCCCChHHHHHHHHHHHHHcCCCCCCc
Q 011989 277 SRPFDCGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHH-ITQPHIDGKGAILAMTRALKQSGLQSHQV 355 (473)
Q Consensus 277 ~~pfd~~~~G~~~geGaaavvL~~~~~A~~~g~~~~a~i~g~~~~~d~~~-~~~~~~~~~~~~~a~~~al~~agl~~~dI 355 (473)
|+|||.+++|+++|||+++|||+++++|+ +||++|+|++.++||.+ .....+++.++.++|++||++||++|+||
T Consensus 212 c~~Fd~~adG~~~gEG~~~~vLk~l~~A~----~i~a~i~g~~~n~dg~~~~~~t~P~~~~q~~~i~~al~~ag~~p~~i 287 (2512)
T 2vz8_A 212 CRSFDAEGTGYCRAEAVVAVLLTKKSLAR----RVYATILNAGTNTDGSKEQGVTFPSGDVQEQLIRSLYAPAGPDPESL 287 (2512)
T ss_dssp CCSSSTTCCCBCBBCEEEEEEEEEGGGCS----CCSEEEEEEEEEECCCCTTCSSSCCHHHHHHHHHTTSGGGSSCTTSC
T ss_pred CCCCCCCCCCcceeeeEEEEEEEEHHHCC----cccEEEEEEEEcCCCCCCCCCCCCCHHHHHHHHHHHHHHcCCCHHHC
Confidence 99999999999999999999999999985 59999999999999963 22333468889999999999999999999
Q ss_pred cEEEEcCCCCCCCCHHHHHHHHHHhhcccCCCCceeeccccchhhhHHhHHHHHHHHHHHHHHhCccCCCCCCCCCCCCC
Q 011989 356 DYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLAIHHGVAPLTLNLAKPDPIF 435 (473)
Q Consensus 356 d~v~~hgtgt~~~D~~E~~a~~~~~~~~~~~~~~~v~s~k~~~Gh~~~AsG~~~li~~~~~l~~~~ipp~~~~~~~~~~~ 435 (473)
+|||+|||||++||++|..|+.++|+... ..+++|+|+|+++||+++|||++++||++++|+|++|||++|+++|+|.+
T Consensus 288 ~yveaHGTgT~~gD~~E~~al~~~f~~~~-~~~~~igS~Ks~iGH~~~AaG~~~~ik~~l~l~~~~ipp~~~~~~~~p~~ 366 (2512)
T 2vz8_A 288 EYIEAHGTGTKVGDPQELNGIVNALCATR-REPLLIGSTKSNMGHPEPASGVAALIKVLLSLEHGVWAPNLHYHTPNPEI 366 (2512)
T ss_dssp CEEECCCCCCTTHHHHHHHHHHHHHCSCS-SSCCEEECHHHHHCBCGGGHHHHHHHHHHHHHTTTBCCCCSSCCSCCTTS
T ss_pred CEEEeecCCCCCCCHHHHHHHHHHhcccC-CCCceeecccccccccccccchhHHHHHHHHHHCCCcCCCCCCCCCCccc
Confidence 99999999999999999999999998532 35799999999999999999999999999999999999999999999998
Q ss_pred C-CC----CCccccCCCCCCcEEEEeccccccceeeEEEeec
Q 011989 436 N-DN----FMPLTASKDMPISAALSNSFGFGGTNASLLFTKC 472 (473)
Q Consensus 436 ~-~~----~~~~~~~~~~~~~~~l~~s~g~gG~~~~~vl~~~ 472 (473)
+ +. .++ .++++++.+++++|||||||+|+|+||+++
T Consensus 367 ~~~~~~~~~~~-~~~~~~~~~~a~vnsfG~gG~Nah~il~~~ 407 (2512)
T 2vz8_A 367 PALQDGRLQVV-DRPLPIRGGNVGINSFGFGGSNVHVILQPN 407 (2512)
T ss_dssp SSSSSSSCEEC-CSCCBCCSCCEEEEEEETTTEEEEEEEEEC
T ss_pred cccccCceEec-CCCccCCCCeEEEeccCCCCceeEEEEccC
Confidence 6 43 122 345556667899999999999999999976
|
| >2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; 3.1A {Thermomyces lanuginosus} PDB: 2uvb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-60 Score=534.73 Aligned_cols=394 Identities=23% Similarity=0.255 Sum_probs=339.2
Q ss_pred CCCHHHHHHHHHcCCCceeeCCccccccCCCCccccccccCCcccceeEEecCCCCCCCCCcccC-CCchhhhccCHHHH
Q 011989 53 GCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSKVAAVVPCGISSGEFNEDSW-LNSKDHRSIARFIA 131 (473)
Q Consensus 53 g~~~~~~~~~l~~G~s~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~~~~-~~~~~~~~~~~~~~ 131 (473)
..+.++||..|.+|++.+.+.. ..++..++|+++.+ ||+.+| |++++.+.|||+++
T Consensus 1132 ~~~~~~~w~~L~~G~~~i~p~~------------------~~~~~~~aG~i~~~-----FD~~~fgI~~~ea~~mDp~~~ 1188 (1878)
T 2uv9_A 1132 IPETGQYTVRLRKGATLLIPKA------------------LQFDRLVAGQIPTG-----WDARRYGVPEDIIQQVDPVTL 1188 (1878)
T ss_dssp CTTTSCEEEEECTTCEEEEEEE------------------ECCSCCEEEECCTT-----CCHHHHTCCHHHHHHSCHHHH
T ss_pred CCChHHHHHHHHcCCCeeeecC------------------CCCcceEEEEeCCC-----CCHhhcCCCHHHHHhcCHHHH
Confidence 3567999999999999998832 23456789999742 999999 99999999999999
Q ss_pred HHHHHHHHHHHHcCCC-CCCC---CCCCceeEEEecCCCChhhHHHHHHHHHHhccccCCCcchhhhhhhHHHHHHHH-h
Q 011989 132 YALCAADEALHDAKWL-PSDQ---GQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSM-K 206 (473)
Q Consensus 132 la~~aa~~Al~dAgl~-~~~~---~~~~~~gvivg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~-~ 206 (473)
|+++++++||+|||++ +.++ .+..++|+++|++.+++......+...... ..+.++.+++.+.|.++++|++ .
T Consensus 1189 l~L~aa~eAL~~AGi~~p~e~~~~i~~s~vGv~vGsg~gg~~~~~~~~~~~~~~--~~v~~~~~~~~~~n~~aa~vs~~~ 1266 (1878)
T 2uv9_A 1189 YVLVSVAEALLSSGITDPYEFYKYVHLSEVGNCIGSGVGGTSALRGMYKDRYLD--KPVQKDILQESFVNTMAAWVNMLL 1266 (1878)
T ss_dssp HHHHHHHHHHHTTTCSSGGGHHHHSCGGGEEEEEEESSCCHHHHHHHHTTTTTT--CCCCSCTTGGGSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCCCCChhhhhcccCccceEEEEccCCccHHHHHHHHHHHHhc--CCCCchhhhcchHHHHHHHHHHHh
Confidence 9999999999999997 5541 247899999999999987766655433322 3477888899999999999999 5
Q ss_pred cCCCCCeeeecCCcchHHHHHHHHHHHHHcCCCCEEEEeecCCCcChHHHHHHhhhhccccc-----cCCCCCCCCcCcc
Q 011989 207 YGFQGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTK-----YNGTPQEASRPFD 281 (473)
Q Consensus 207 lgl~Gp~~~v~~acasg~~Al~~A~~~I~~G~~d~vlv~g~d~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~pfd 281 (473)
||++||+++++++|+|++.||+.|++.|++|+||++||||+|. .++.....|..+++++.. .+..|++.||||+
T Consensus 1267 lg~~GP~~tv~tACASsl~Al~~A~~~I~sG~advalvGGvd~-~~~~~~~~f~~m~als~~~de~a~g~~p~~~~RPfd 1345 (1878)
T 2uv9_A 1267 LSSTGPIKTPVGACATAVESLDVGYDTIMQGKARVCLVGGFDD-FQEEGSYEFANMGATSNAKEEFARGREPGEMSRPTS 1345 (1878)
T ss_dssp CCCCCCBCCBCCGGGHHHHHHHHHHHHHTTTSCSEEEEEEEEC-CCHHHHHHHHHHTCBCCHHHHHTTTCCTTSSCCSSB
T ss_pred cCCCCCeEEEcCcchHHHHHHHHHHHHHHcCCCCEEEEeeecc-CChHHHHHHHHhhhhccchhhhhcCCCcccCcCCCc
Confidence 9999999999999999999999999999999999999999998 678888889998888742 2345789999999
Q ss_pred CCCCceeeccceEEEEEccchHHHhcCCeEEEEEEEEEEecCCCCCCCCCCC-h--------------------------
Q 011989 282 CGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHID-G-------------------------- 334 (473)
Q Consensus 282 ~~~~G~~~geGaaavvL~~~~~A~~~g~~~~a~i~g~~~~~d~~~~~~~~~~-~-------------------------- 334 (473)
..++||+.|||++++||++.+.|+++|.+||++|.|++.++|+.+.+.|.+. +
T Consensus 1346 ~~r~Gfv~gEGag~vVL~~~~~A~~~G~~I~avI~g~a~~~Dg~~~s~paPg~G~~t~ar~~~~~~ps~~~~~~~r~~~~ 1425 (1878)
T 2uv9_A 1346 TTRNGFMESQGCGVQVIMTAQLALEMGVPIYGIVAMTSTATDKIGRSVPAPGQGVLTTAREKSGNFPSPLLDIKYRRRQL 1425 (1878)
T ss_dssp TTCCCBCBBCEEEEEEEEEHHHHHHHTCCCCEEEEEEEEECCCSCSCSSCCCSCGGGGGCCCCCSSCCGGGSHHHHHHHH
T ss_pred cCCCCCcccceeEEEEEeeHHHHHHCCCceEEEEEEEEEecCCCccCCCCCCcchhhhhhhccccCCCcccchHHHHHHH
Confidence 9999999999999999999999999999999999999999999865443330 0
Q ss_pred ----------------------------------------HHHH-------------------------------HHHHH
Q 011989 335 ----------------------------------------KGAI-------------------------------LAMTR 343 (473)
Q Consensus 335 ----------------------------------------~~~~-------------------------------~a~~~ 343 (473)
.++. .++++
T Consensus 1426 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~Q~~~~~i~~~~~~q~~~a~~~~g~~~~~~~~~~~~ir~ 1505 (1878)
T 2uv9_A 1426 ELRRQQIKQWKESEYLYLQEEVAAIKSQRSEEDGPFDETAYLRERTEHIEREARRQEAEAQTSFGNEFWRRDSRIAPLRG 1505 (1878)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTTTCCSSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTTTCTTSCHHHH
T ss_pred HHHHHHHHHhhhhhhhhhhHHHHhhhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHhhcccccccChHHHHHHH
Confidence 0111 78999
Q ss_pred HHHHcCCCCCCccEEEEcCCCCCCCCHHHHHHHHHHhhc--ccCCCCceeeccccchhhhHHhHHHHHHHHHHHHHHhCc
Q 011989 344 ALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSD--HATSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLAIHHGV 421 (473)
Q Consensus 344 al~~agl~~~dId~v~~hgtgt~~~D~~E~~a~~~~~~~--~~~~~~~~v~s~k~~~Gh~~~AsG~~~li~~~~~l~~~~ 421 (473)
||+.+||+++|||||++|||||++||++|..+|.++|+. ...+.+++++++|+++||+.||+|+.++++++++|++|+
T Consensus 1506 ALa~aGl~~~DId~veaHGTgT~~gD~~E~~al~~~f~~~~r~~~~pl~v~s~KsliGH~~gAAGa~~li~~l~~L~~g~ 1585 (1878)
T 2uv9_A 1506 ALATWGLTIDDLGVASFHGTSTVANDKNESDVICQQLKHLGRTKGNAVLGIFQKYLTGHPKGAAGAWMLNGCLQVLNTGI 1585 (1878)
T ss_dssp HHHTTTCCGGGEEEEECCCCSCHHHHHHHHHHHHHHHHHHTCCTTCCEEEECTHHHHCBCTTCHHHHHHHHHHHHHTTCE
T ss_pred HHHHcCCCHHHeeEEEEcCCCCcccCHHHHHHHHHHHhhcCCCCCCceeEEecccccCChHhHhhHHHHHHHHHHHhcCC
Confidence 999999999999999999999999999999999999985 223467999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCCC-CCCCCcc-ccCCC-CCCcEEEEeccccccceeeEEEeec
Q 011989 422 APLTLNLAKPDPIF-NDNFMPL-TASKD-MPISAALSNSFGFGGTNASLLFTKC 472 (473)
Q Consensus 422 ipp~~~~~~~~~~~-~~~~~~~-~~~~~-~~~~~~l~~s~g~gG~~~~~vl~~~ 472 (473)
|||++|+++|+|.+ +++++.+ .+.+. .+++++++|||||||+|+|+||+++
T Consensus 1586 iPp~~n~d~~dp~i~~~~~v~~~~~~~~~~~~r~a~v~SFGFGG~NahvIle~p 1639 (1878)
T 2uv9_A 1586 VPGNRNADNVDKVMEQFDYIVYPSRSIKTDGIKAFSVTSFGFGQKGAQAIGVHP 1639 (1878)
T ss_dssp ECCCTTCCSBCGGGGGCTTEECCSSCEECSCCCEEEEEEEETTTEEEEEEEECT
T ss_pred CCCCCCCCCCCCccccccccccccccccCCCCCEEEEccCCCCCeeEEEEEecC
Confidence 99999999999998 4666521 23322 3689999999999999999999875
|
| >2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_A* 3hmj_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-59 Score=532.84 Aligned_cols=400 Identities=22% Similarity=0.265 Sum_probs=340.9
Q ss_pred CceEEEecceecccCCCHHHHHHHHHcCCCceeeCCccccccCCCCccccccccCCcccceeEEecCCCCCCCCCcccC-
Q 011989 39 RRVVVTGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSKVAAVVPCGISSGEFNEDSW- 117 (473)
Q Consensus 39 ~~v~ItG~g~~~p~g~~~~~~~~~l~~G~s~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~~~~- 117 (473)
++|+|++ ..+.++||.+|.+|++.+.+.+ ..++.+++|+++. .||+.+|
T Consensus 1150 ~~~~I~~-------~~~~~~~w~~L~~G~~~i~p~~------------------~~~~~~~aG~i~~-----~FD~~~fg 1199 (1887)
T 2uv8_A 1150 DKVDIFE-------IPETGEYSVKLLKGATLYIPKA------------------LRFDRLVAGQIPT-----GWNAKTYG 1199 (1887)
T ss_dssp GGEEEEE-------CTTTSCEEEEECTTCEEEEEEE------------------ECCSCCEEECCCT-----TCCTTTTT
T ss_pred CceeEee-------cCchHHHHHHHHcCCceeeccc------------------CCCCccEEEEECC-----CCChhhcC
Confidence 3566663 2457899999999999998842 2345678899874 2999999
Q ss_pred CCchhhhccCHHHHHHHHHHHHHHHHcCCC-CCC----CCCCCceeEEEecCCCChhhHHHHHHHHHHhccccCCCcchh
Q 011989 118 LNSKDHRSIARFIAYALCAADEALHDAKWL-PSD----QGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIP 192 (473)
Q Consensus 118 ~~~~~~~~~~~~~~la~~aa~~Al~dAgl~-~~~----~~~~~~~gvivg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (473)
|++++.+.|||+++|+++++++||+|||++ +.+ + +..++||++|++.+++......+...... ..+.++.++
T Consensus 1200 I~~~ea~~mDp~~~l~L~aa~eAL~dAGi~dp~e~~~~i-~~s~vGv~vGs~~gg~~~~~~~~~~~~~~--~~v~~~~~~ 1276 (1887)
T 2uv8_A 1200 ISDDIISQVDPITLFVLVSVVEAFIASGITDPYEMYKYV-HVSEVGNCSGSGMGGVSALRGMFKDRFKD--EPVQNDILQ 1276 (1887)
T ss_dssp CCHHHHHHSCHHHHHHHHHHHHHHHHTTCSSGGGHHHHS-CGGGEEECCEESSCCHHHHHHHHTTTTTT--CCCCTTHHH
T ss_pred CCHHHHHhcCHHHHHHHHHHHHHHHHcCCCChhhhhccc-CCceeEEEeccCCccHHHHHHHHHHHHhc--CCCCcchhh
Confidence 999999999999999999999999999995 555 3 47899999999999987766655433222 347788888
Q ss_pred hhhhhHHHHHHHH-hcCCCCCeeeecCCcchHHHHHHHHHHHHHcCCCCEEEEeecCCCcChHHHHHHhhhhccccc---
Q 011989 193 RILINMASGHVSM-KYGFQGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTK--- 268 (473)
Q Consensus 193 ~~~~~~~a~~ia~-~lgl~Gp~~~v~~acasg~~Al~~A~~~I~~G~~d~vlv~g~d~~~~~~~~~~~~~~~~~~~~--- 268 (473)
..+.|.++++|++ .||++||+++++++|+|++.||+.|++.|++|+||++||||+|. +++.....|..++.++..
T Consensus 1277 ~~~~n~~aa~is~~~lgl~GP~~tv~tACASsl~Al~~A~~~I~sG~advaLvGGvd~-~~~~~~~~f~~m~als~~~~e 1355 (1887)
T 2uv8_A 1277 ESFINTMSAWVNMLLISSSGPIKTPVGACATSVESVDIGVETILSGKARICIVGGYDD-FQEEGSFEFGNMKATSNTLEE 1355 (1887)
T ss_dssp HHSTTHHHHHHHHHTTCCCSCCCCCCCGGGHHHHHHHHHHHHHHTTSCSEEEEEEEEC-CCHHHHHHHHHTTCBCCHHHH
T ss_pred cchhhHHHHHHHHHHcCCccceEEeecccccHHHHHHHHHHHHHcCCCCEEEEeeecc-CChHHHHHHHHhhhhccchhh
Confidence 8899999999999 59999999999999999999999999999999999999999998 577778889998888742
Q ss_pred --cCCCCCCCCcCccCCCCceeeccceEEEEEccchHHHhcCCeEEEEEEEEEEecCCCCCCCCCCC-------------
Q 011989 269 --YNGTPQEASRPFDCGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHID------------- 333 (473)
Q Consensus 269 --~~~~~~~~~~pfd~~~~G~~~geGaaavvL~~~~~A~~~g~~~~a~i~g~~~~~d~~~~~~~~~~------------- 333 (473)
.+..|++.||||+..++|+++|||++++||++.+.|+++|.+||++|.|++.++|+.+.+.|.+.
T Consensus 1356 ~~~g~~p~~~~RPfd~~r~Gfv~gEGag~vVL~~~~~A~~~G~~I~avI~g~a~~~Dg~~~s~paPg~G~lt~ar~~~G~ 1435 (1887)
T 2uv8_A 1356 FEHGRTPAEMSRPATTTRNGFMEAQGAGIQIIMQADLALKMGVPIYGIVAMAATATDKIGRSVPAPGKGILTTAREHHSS 1435 (1887)
T ss_dssp HHTTCCGGGSCCTTBTTCCSBCBBCEEEEEEEEEHHHHHHHTCCCCEEEEEEEEECCCSCSCTTCCCSGGGGGGCCCCSC
T ss_pred hcccCCCccCcCCCcccCCCcccccceEEEEEccHHHHHHCCCceEEEEeeeEEecCCccccCCCCCccccccccccccc
Confidence 13447789999999999999999999999999999999999999999999999998865433321
Q ss_pred -----h-------------------------------------------HHH----------------------------
Q 011989 334 -----G-------------------------------------------KGA---------------------------- 337 (473)
Q Consensus 334 -----~-------------------------------------------~~~---------------------------- 337 (473)
. .++
T Consensus 1436 gt~ps~~ld~~~r~~ql~~~~~~i~~~~~~~~~~l~~~~~~~g~~~~~~~~Qe~~~~i~~~~~~~~~~~~~~~~~~~~~~ 1515 (1887)
T 2uv8_A 1436 VKYASPNLNMKYRKRQLVTREAQIKDWVENELEALKLEAEEIPSEDQNEFLLERTREIHNEAESQLRAAQQQWGNDFYKR 1515 (1887)
T ss_dssp CSSCCGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTTT
T ss_pred cCCCCcccchHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHHHHHhhccchhhc
Confidence 1 011
Q ss_pred ---HHHHHHHHHHcCCCCCCccEEEEcCCCCCCCCHHHHHHHHHHhhc--ccCCCCceeeccccchhhhHHhHHHHHHHH
Q 011989 338 ---ILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSD--HATSGSLAFSSTKGAIGHLLGAAGAVEAIF 412 (473)
Q Consensus 338 ---~~a~~~al~~agl~~~dId~v~~hgtgt~~~D~~E~~a~~~~~~~--~~~~~~~~v~s~k~~~Gh~~~AsG~~~li~ 412 (473)
..++++||+++||+++|||||++|||||++||++|..+|.++|+. ...+.++++++.|+++||+.||+|+.++++
T Consensus 1516 d~~~~air~ALa~AGl~p~DId~veaHGTgT~~gD~~E~~Al~~~f~~~gr~~~~pl~v~s~KsliGH~~gAAGa~~li~ 1595 (1887)
T 2uv8_A 1516 DPRIAPLRGALATYGLTIDDLGVASFHGTSTKANDKNESATINEMMKHLGRSEGNPVIGVFQKFLTGHPKGAAGAWMMNG 1595 (1887)
T ss_dssp CSSSCHHHHHHHTTTCCGGGEEEEECCCCSCHHHHHHHHHHHHHHHHHHTCCTTCCEEEECTHHHHCBCGGGHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCCHHHceEEEecCCCCcccCHHHHHHHHHHHhhhccCCCCcEEEEecccceechHHHHhHHHHHH
Confidence 368999999999999999999999999999999999999999975 223457999999999999999999999999
Q ss_pred HHHHHHhCccCCCCCCCCCCCCCC-CCCCcc-ccCCC-CCCcEEEEeccccccceeeEEEeec
Q 011989 413 AVLAIHHGVAPLTLNLAKPDPIFN-DNFMPL-TASKD-MPISAALSNSFGFGGTNASLLFTKC 472 (473)
Q Consensus 413 ~~~~l~~~~ipp~~~~~~~~~~~~-~~~~~~-~~~~~-~~~~~~l~~s~g~gG~~~~~vl~~~ 472 (473)
++++|++|.|||++|+++|+|.++ ++++.+ .+.+. .+++++++|||||||+|+|+||+++
T Consensus 1596 ~ll~L~~g~iPpt~n~d~~dp~l~~~~~l~~~~~~~~~~~~r~a~v~SFGFGG~NahvIle~p 1658 (1887)
T 2uv8_A 1596 ALQILNSGIIPGNRNADNVDKILEQFEYVLYPSKTLKTDGVRAVSITSFGFGQKGGQAIVVHP 1658 (1887)
T ss_dssp HHHHHTTCEECCCTTCSSBCGGGGGCTTEECCSSCEECSCCCEEEEEEEETTTEEEEEEEECT
T ss_pred HHHHHHhCCcCCcCCCCCCCCccccccccccccccccCCCCCEEEEccCCCCCccEEEEEecC
Confidence 999999999999999999999984 665421 33333 3689999999999999999999875
|
| >2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-62 Score=532.26 Aligned_cols=393 Identities=22% Similarity=0.264 Sum_probs=332.5
Q ss_pred CCHHHHHHHHHcCCCceeeCCccccccCCCCccccccccCCcccceeEEecCCCCCCCCCcccC-CCchhhhccCHHHHH
Q 011989 54 CGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSKVAAVVPCGISSGEFNEDSW-LNSKDHRSIARFIAY 132 (473)
Q Consensus 54 ~~~~~~~~~l~~G~s~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~~~~-~~~~~~~~~~~~~~l 132 (473)
.+.++||+.|.+|++.+.+.. ..++.+++|++++ .||+.+| |+++..+.|||+++|
T Consensus 959 ~~~eefW~~L~~G~~~i~p~~------------------~~~~~~vaG~Ip~-----gFD~~~fGIs~~ea~~mDP~qrL 1015 (1688)
T 2pff_A 959 PETGEYSVKLLKGATLYIPKA------------------LRFDRLVAGQIPT-----GWNAKTYGISDDIISQVDPITLF 1015 (1688)
T ss_dssp CCCCSSSCCCCCCTTCCCCCC------------------CCEECCSSCSCCC-----CCCCCCSSCCTTTBTTBCSSTTH
T ss_pred CCHHHHHHHHHcCCCEEecCC------------------CCCCceEEEEECC-----CCChhhCCCCHHHHhccCHHHHH
Confidence 357899999999999988732 2344566778863 3999999 999999999999999
Q ss_pred HHHHHHHHHHHcCCC-CCCC---CCCCceeEEEecCCCChhhHHHHHHHHHHhccccCCCcchhhhhhhHHHHHHHH-hc
Q 011989 133 ALCAADEALHDAKWL-PSDQ---GQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSM-KY 207 (473)
Q Consensus 133 a~~aa~~Al~dAgl~-~~~~---~~~~~~gvivg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~-~l 207 (473)
+++++++||+|||++ +.++ .+..++||++|++.+++......+..... ...+++..++..+.|.++++++. .|
T Consensus 1016 aLeAa~EALedAGI~dP~ei~~~i~~s~vGV~vGSg~Gg~~~l~~~~~~~~~--~~~v~~~~l~~~~~nt~Aa~Vs~~~L 1093 (1688)
T 2pff_A 1016 VLVSVVEAFIASGITDPYEMYKYVHVSEVGNCSGSGMGGVSALRGMFKDRFK--DEPVQNDILQESFINTMSAWVNMLLI 1093 (1688)
T ss_dssp HHHHHHHHHTTTTCSSGGGGGGGTCCSCSCCCCCCCSCCCSSHHHHHHSSSS--CCCCCSTTHHHHCTHHHHHHHHHSSC
T ss_pred HHHHHHHHHHHcCCCChHHhccccCCceEEEEecccCCCHHHHHHHHHHHHh--cCCCCcchhccccHHHHHHHHHHHHc
Confidence 999999999999997 5541 24789999999999988776665543322 23477888888899999999999 79
Q ss_pred CCCCCeeeecCCcchHHHHHHHHHHHHHcCCCCEEEEeecCCCcChHHHHHHhhhhccccc-----cCCCCCCCCcCccC
Q 011989 208 GFQGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTK-----YNGTPQEASRPFDC 282 (473)
Q Consensus 208 gl~Gp~~~v~~acasg~~Al~~A~~~I~~G~~d~vlv~g~d~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~pfd~ 282 (473)
|++||+++++++|+|++.||+.|+++|++|+||++||||+|.+ ++.....|..+++++.. .+..|++.|||||.
T Consensus 1094 Gl~GPs~TVdtACASSL~AL~lA~~aIrsGeaDvaLVGGvE~m-sp~~~~~Fa~mgaLS~~~~e~a~G~~Pd~~cRPFd~ 1172 (1688)
T 2pff_A 1094 SSSGPIKTPVGACATSVESVDIGVETILSGKARICIVGGYDDF-QEEGSFEFGNMKATSNTLEEFEHGRTPAEMSRPATT 1172 (1688)
T ss_dssp CCCCCCCCCCCTTTTTHHHHHHHHHHHHTTTCSCBCCCCCCCC-CTTTTTTTTTTSCSCCTTTTTTSSCCSSSSCCSSSS
T ss_pred CCcCCeEEecCCCchHHHHHHHHHHHHHCCCCCEEEEeeeccC-CHHHHHHHHhccccccChhhhhcCCChhhccCcCcc
Confidence 9999999999999999999999999999999999999999985 56556667788877642 13347889999999
Q ss_pred CCCceeeccceEEEEEccchHHHhcCCeEEEEEEEEEEecCCCCCCCCCC--------------------C---------
Q 011989 283 GRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHI--------------------D--------- 333 (473)
Q Consensus 283 ~~~G~~~geGaaavvL~~~~~A~~~g~~~~a~i~g~~~~~d~~~~~~~~~--------------------~--------- 333 (473)
+++|+++|||++++||++.+.|+++|.+||++|.|++.++|+.+.+.|.+ .
T Consensus 1173 ~rdGfv~GEGAGavVLesle~Al~~G~~IyAvI~GsavnsDg~~~SipAPg~GiLt~Ar~~~G~~taPSp~ld~~~R~rq 1252 (1688)
T 2pff_A 1173 TRNGFMEAQGAGIQIIMQADLALKMGVPIYGIVAMAATATDKIGRSVPAPGKGILTTAREHHSSVKYASPNLNMKYRKRQ 1252 (1688)
T ss_dssp SCCCCCCCSCCEEEEEECSHHHHSSSCCCCCEECCCCCCCCCCCSSSCCCCSSSSSSSSSCCCCSSCSSCCSCTTCCHHH
T ss_pred CCCCCccccceEEEEeCcHHHHHHCCCceEEEEEEEEEECCCCccCCCCCCCCccchhhhcccccCCCCcccChHHHHHH
Confidence 99999999999999999999999999999999999999999875432221 1
Q ss_pred --------------------------------hHHH-------------------------------HHHHHHHHHHcCC
Q 011989 334 --------------------------------GKGA-------------------------------ILAMTRALKQSGL 350 (473)
Q Consensus 334 --------------------------------~~~~-------------------------------~~a~~~al~~agl 350 (473)
..++ ..++++||+++||
T Consensus 1253 l~~~~~~i~~~~~~e~~~l~~e~~~~g~~~~~~~aQer~~~i~~~~~r~~~~~~~~~Gn~f~~~d~~~~aIr~ALa~AGL 1332 (1688)
T 2pff_A 1253 LVTREAQIKDWVENELEALKLEAEEIPSEDQNEFLLERTREIHNEAESQLRAAQQQWGNDFYKRDPRIAPLRGALATYGL 1332 (1688)
T ss_dssp HSHHHHHHHHHHHHHHHHHHHHSSSSCSSHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTSSSSSCTTCCSHHHHTTSSCS
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHhhhcccchhhHHHHHHHHHHHHHHHHHHHHHhccCCceecchHHHHHHHHHHHHcCC
Confidence 0011 3679999999999
Q ss_pred CCCCccEEEEcCCCCCCCCHHHHHHHHHHhhcc--cCCCCceeeccccchhhhHHhHHHHHHHHHHHHHHhCccCCCCCC
Q 011989 351 QSHQVDYVNAHATSTPLGDTVEATAIRTVFSDH--ATSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLAIHHGVAPLTLNL 428 (473)
Q Consensus 351 ~~~dId~v~~hgtgt~~~D~~E~~a~~~~~~~~--~~~~~~~v~s~k~~~Gh~~~AsG~~~li~~~~~l~~~~ipp~~~~ 428 (473)
+++||||||+|||||++||++|..+|.++|+.. ..+.++++++.|+++||+.||||+.++++++++|++|.|||++|+
T Consensus 1333 tpdDIdyVEaHGTGT~lgD~iE~~AL~~af~~~gr~~g~pl~V~S~KsliGHp~GAAGa~~Lik~llaL~~G~IPptln~ 1412 (1688)
T 2pff_A 1333 TIDDLGVASFHGTSTKANDKNESATINEMMKHLGRSEGNPVIGVFQKFLTGHPKGAAGAWMMNGALQILNSGIIPGNRNA 1412 (1688)
T ss_dssp STTCCCCCCCCCCSCSSSSTTTTTTTGGGTGGGCCCTTCCCCCCCCTTTTCCCSSTHHHHHHHHHHHHSTTCCCCCCSCC
T ss_pred CHHHeeEEEEeCCCCccccHHHHHHHHHHHhhhCcCCCCeEEEEeChhhhcchHHHhhHHHHHHHHHHHHcCCCCCCCCC
Confidence 999999999999999999999999999999852 234579999999999999999999999999999999999999999
Q ss_pred CCCCCCCC-CCCCcc-ccCCCC-CCcEEEEeccccccceeeEEEeec
Q 011989 429 AKPDPIFN-DNFMPL-TASKDM-PISAALSNSFGFGGTNASLLFTKC 472 (473)
Q Consensus 429 ~~~~~~~~-~~~~~~-~~~~~~-~~~~~l~~s~g~gG~~~~~vl~~~ 472 (473)
++|+|.++ ++.+.+ .+.+.. +++++++|||||||+|+|+||+++
T Consensus 1413 d~pdp~l~~~d~v~~p~~~~~~~~~r~AlVnSFGFGGtNAhvILe~p 1459 (1688)
T 2pff_A 1413 DNVDKILEQFEYVLYPSKTLKTDGVRAVSITSFGFGQKGGQAIVVHP 1459 (1688)
T ss_dssp SCCCTTCCSSCCCCSCTTCCSSSSSSCCCCCCCCSTTCCCCCCEECS
T ss_pred CCCCCCCCcCCceeecCccccCCCCcEEEEeeECCCCeeEEEEEeCC
Confidence 99999994 565521 333333 689999999999999999999875
|
| >3zen_D Fatty acid synthase; transferase, mycolic acid biosynthesis, multifunctional ENZY substrate channeling; HET: FMN; 7.50A {Mycobacterium smegmatis} PDB: 4b3y_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-56 Score=525.44 Aligned_cols=413 Identities=21% Similarity=0.290 Sum_probs=342.2
Q ss_pred ccCCCHHHHHHHHHcCCCc--eeeCCc-cccccCCCCccc-cccccCCcccceeEEecCCCCCCCCCcccC-CCchhhhc
Q 011989 51 PLGCGAETTWRRLIVGECG--IREITP-EDLKMGNFDRET-QLHAFGQLTSKVAAVVPCGISSGEFNEDSW-LNSKDHRS 125 (473)
Q Consensus 51 p~g~~~~~~~~~l~~G~s~--i~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~fd~~~~-~~~~~~~~ 125 (473)
+.-.+.++.|+...++.+. |.+.+. ..|+...++... ..-....++.+++|++++ .||+.+| |++++.+.
T Consensus 2569 ~~~~s~~~a~~~~~~~~~~~~i~~~~~~~~W~~~~~~~~~i~~p~~~~~~~~~gG~i~d-----~FD~~~fgIs~rea~~ 2643 (3089)
T 3zen_D 2569 FVVSSEADARAFVQFDPEHTVARPLPDSSDWEVTRKAGTEIRVPRKTKLSRTVGAQIPT-----GFDPTVWGISPDMASS 2643 (3089)
T ss_dssp CEEECHHHHHHHHTTSTTSEEEEECTTTCCEEEEECTTCEEEEEEEECCSCCEEECCCT-----TCCTTTTTCCHHHHHH
T ss_pred cccCCHHHHHHHHHhCCCcceEEeCCCCcceeeeecCCCCcCCCCcCCccceEEEEcCC-----CCChhhcCCCHHHHHh
Confidence 3445788888888775544 455655 567644332221 111234567788999974 3999999 99999999
Q ss_pred cCHHHHHHHHHHHHHHHHcCCCCCCCC---CCCceeEEEecCCCChhhHHHHHHHHHHhccccCCCcchhhhhhhHHHHH
Q 011989 126 IARFIAYALCAADEALHDAKWLPSDQG---QKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGH 202 (473)
Q Consensus 126 ~~~~~~la~~aa~~Al~dAgl~~~~~~---~~~~~gvivg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 202 (473)
|||+++|+++++++||+|||+++.+++ +..++||++|++.++.......+..+.. +....++ .++..+.+.++++
T Consensus 2644 mDp~~rL~l~aa~eALedAGi~p~~l~~~~~~~~vGV~vG~~~gg~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~aa~ 2721 (3089)
T 3zen_D 2644 IDRVALWNIVATVDAFLSSGFTPTELMRWVHPSQVASTQGTGMGGMTSMQTMYHGNLL-GRAKPND-ILQEVLPNVVAAH 2721 (3089)
T ss_dssp SCHHHHHHHHHHHHHHTTSCSCGGGHHHHSCGGGEEEEEEESSCCHHHHHHHHHHHHT-TCCCCTT-HHHHTSTTHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHcCCCHHHhhcccCcceeEEEEeecCccHHHHHHHHHHHhc-CCCccch-hhccccccHHHHH
Confidence 999999999999999999999887652 4789999999999998877776665544 2333333 5677788999999
Q ss_pred HHH-hcCCCCCeeeecCCcchHHHHHHHHHHHHHcCCCCEEEEeecCCCcChHHHHHHhhhhcccc-----ccCCCCCCC
Q 011989 203 VSM-KYGFQGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTT-----KYNGTPQEA 276 (473)
Q Consensus 203 ia~-~lgl~Gp~~~v~~acasg~~Al~~A~~~I~~G~~d~vlv~g~d~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~ 276 (473)
++. .||++||+++|+++|+|++.||++|+++|++|+||++||+|+|. +++..+..|..++.++. ..+..++..
T Consensus 2722 is~~~lGl~GPs~tV~tACSSsl~Al~~A~~~IrsG~~d~aLaGGve~-ls~~~~~~f~~~~als~~~~~~~~~~sp~~~ 2800 (3089)
T 3zen_D 2722 VMQSYVGGYGAMVHPVGACATAAVSVEEGVDKIKLGKADLVIAGGFDD-LTLEAIIGFGDMAATADTEMMRAKGISDSKF 2800 (3089)
T ss_dssp HHHHTTCCCSCEECCBCTTCHHHHHHHHHHHHHHTTSCSEEEEEEEEC-CCHHHHHHHHHHTCBCCHHHHHHTTCCTTTS
T ss_pred HHHHHcCCCCCceeeccchhhHHHHHHHHHHHHHCCCCCeeEEeeecc-cCHHHHHHHHHhhhhhcchhhhhccCCcccc
Confidence 986 45999999999999999999999999999999999999999999 78888888888887763 224567899
Q ss_pred CcCccCCCCceeeccceEEEEEccchHHHhcCCeEEEEEEEEEEecCCCCCCCCCCCh-------HHHHHHHHHHHHHcC
Q 011989 277 SRPFDCGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDG-------KGAILAMTRALKQSG 349 (473)
Q Consensus 277 ~~pfd~~~~G~~~geGaaavvL~~~~~A~~~g~~~~a~i~g~~~~~d~~~~~~~~~~~-------~~~~~a~~~al~~ag 349 (473)
|+|||.+++|+++|||+++|||+++++|+++|++||++|.+.+.++|+.+.+.+.+.. .++.++++++|+++|
T Consensus 2801 crpFd~~~dG~v~GEGAgavVL~~~e~A~~~G~~I~avI~g~~~n~Dg~~~~~~aP~~g~~~a~~~~q~~ai~~AL~~AG 2880 (3089)
T 3zen_D 2801 SRANDRRRLGFLEAQGGGTILLARGDLALKMGLPVLAVVGYAQSFADGVHTSIPAPGLGALGAARGGRESTLARSLAQLG 2880 (3089)
T ss_dssp CCSSBTTCCCBCBBCEEEEEEEEEHHHHHHHTCCCCEEEEEEEEECCCCCCCSSCCCCGGGGGSTTGGGSHHHHHHHTTT
T ss_pred cCccccCCCCEEEeccceEEEEeeHHHHHhCCCceEEEEEEEEEecCCcccCccCCchhHHhHhhhhHHHHHHHHHHHcC
Confidence 9999999999999999999999999999999999999999999999998876655531 245678999999999
Q ss_pred CCCCCccEEEEcCCCCCCCCHHHHH---HHHHHhhcccCCCCceeeccccchhhhHHhHHHHHHHHHHHHHHhCccCCCC
Q 011989 350 LQSHQVDYVNAHATSTPLGDTVEAT---AIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLAIHHGVAPLTL 426 (473)
Q Consensus 350 l~~~dId~v~~hgtgt~~~D~~E~~---a~~~~~~~~~~~~~~~v~s~k~~~Gh~~~AsG~~~li~~~~~l~~~~ipp~~ 426 (473)
++++||||||+|||||++||++|.. ++.+.|+.. .+.+++|+++|+++||++||||++++++++++|++++|||++
T Consensus 2881 l~p~DIdyVEaHGTGT~lgD~~E~~al~al~~~fg~~-~~~~~~v~s~Ks~iGH~~gAAG~~~lik~ll~L~~g~iPpt~ 2959 (3089)
T 3zen_D 2881 VGADDIAVISKHDTSTLANDPNETELHERIADSMGRA-PGNPLFIVSQKTLTGHAKGGAAVFQMMGLCQILRDGVIPPNR 2959 (3089)
T ss_dssp CCGGGEEEEECCCCCCTTHHHHHHHHHHHHHHHTTCC-TTCCEEEECSHHHHCBCSTTHHHHHHHHHHHHHHHCCBCCCT
T ss_pred CCHHHeeEEEEecCCcccccHHHHHHHHHHHHHhCcc-CCCcceecccccccCCchhhhhHHHHHHHHHHHhcCccCCCC
Confidence 9999999999999999999999999 678888753 235799999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCC--CCccccC----CCCCCcEEEEeccccccceeeEEEeec
Q 011989 427 NLAKPDPIFNDN--FMPLTAS----KDMPISAALSNSFGFGGTNASLLFTKC 472 (473)
Q Consensus 427 ~~~~~~~~~~~~--~~~~~~~----~~~~~~~~l~~s~g~gG~~~~~vl~~~ 472 (473)
|+++++|.++.+ +....+. +..++|++++|||||||+|+|+||+++
T Consensus 2960 ~~~~~np~i~~~~~~~~~~~~~~w~~~~~~r~a~vnSfGfGG~NahvVle~~ 3011 (3089)
T 3zen_D 2960 SLDCVDDELATSGHFVWVREPLDLRGKFPLKAGLVTSLGFGHVSGLVALVHP 3011 (3089)
T ss_dssp TCSSBCGGGGGCSSEEECSSCBCCCTTSCCCEEEEEEEETTTEEEEEEEECG
T ss_pred CCCCCCCCccccCCeeecCCCccCCCCCCCCEEEEccccCCCCeEEEEEecC
Confidence 999999998721 1110222 244589999999999999999999986
|
| >1ulq_A Putative acetyl-COA acetyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 3.00A {Thermus thermophilus} SCOP: c.95.1.1 c.95.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-35 Score=297.39 Aligned_cols=274 Identities=20% Similarity=0.243 Sum_probs=209.6
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCceeEEEecCCCChhhHHHHHHHHHHhccccCCCcchhhhhhhHHHHHHHHhcC
Q 011989 129 FIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYG 208 (473)
Q Consensus 129 ~~~la~~aa~~Al~dAgl~~~~~~~~~~~gvivg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lg 208 (473)
..+|+++|+++||+|||+++++++ +|++|+..+... ..+.++.+++..||
T Consensus 26 ~~~L~~~Aa~~Al~dAgl~~~~id-----~v~~g~~~~~~~-------------------------~~~~~a~~va~~lG 75 (401)
T 1ulq_A 26 PDDLLAHALSVLVDRSGVPKEEVE-----DVYAGCANQAGE-------------------------DNRNVARMALLLAG 75 (401)
T ss_dssp HHHHHHHHHHHHHHHHTCCGGGCC-----EEEEECSCCSST-------------------------TTTTHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCC-----EEEEEecccCCC-------------------------CCChHHHHHHHHhC
Confidence 467999999999999999888776 899998653311 02456889999999
Q ss_pred C--CCCeeeecCCcchHHHHHHHHHHHHHcCCCCEEEEeecCCCcC-hHH--------------H----------HHHh-
Q 011989 209 F--QGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSID-ALS--------------M----------AGFC- 260 (473)
Q Consensus 209 l--~Gp~~~v~~acasg~~Al~~A~~~I~~G~~d~vlv~g~d~~~~-~~~--------------~----------~~~~- 260 (473)
+ ++|+++++++|+|++.||.+|+++|++|++|++||+|+|.++. |.. + ..+.
T Consensus 76 l~~~~p~~~v~~aCas~~~Al~~A~~~I~~G~~d~vLv~G~e~~s~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~p 155 (401)
T 1ulq_A 76 FPVEVAGCTVNRLCGSGLEAVAQAARAIWAGEGKVYIGSGVESMSRAPYAVPKPERGFPTGNLVMYDTTLGWRFVNPKMQ 155 (401)
T ss_dssp CCTTCEEEEEECGGGHHHHHHHHHHHHHHTTSCSEEEEEEEEESSSCCEEECCCCSSSCCSCEEEEETTSSCCSCCHHHH
T ss_pred CCCCccEeeccccchHHHHHHHHHHHHHHCCCCCEEEEEEEeecCCCcccccccccccccCcccccchhhhccccccccc
Confidence 9 7899999999999999999999999999999999999997654 210 0 0110
Q ss_pred -h-----hhcc---------------------cc----------ccCC----------------CCCC------------
Q 011989 261 -K-----SRAL---------------------TT----------KYNG----------------TPQE------------ 275 (473)
Q Consensus 261 -~-----~~~~---------------------~~----------~~~~----------------~~~~------------ 275 (473)
. ++.. +. .+.. .+++
T Consensus 156 ~~~~~~~~~~~a~~~~~~~g~sre~~~~~a~~s~~~A~~~~~ag~~~~ei~P~~~~~~~~~~~~~~d~~~r~~~t~e~~~ 235 (401)
T 1ulq_A 156 ALYGTESMGETAENLAEMYGIRREEQDRFALLSHQKAVRAWEEGRFQDEVVPVPVKRGKEEILVEQDEGPRRDTSLEKLA 235 (401)
T ss_dssp HHSCCCCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHTTTTTTTBCCEEEEETTEEEEECSCSCCCTTCCHHHHH
T ss_pred cccccchHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhcCCcccceeceeecCCCCceeeccccccCCCCCHHHHh
Confidence 0 0000 00 0000 0111
Q ss_pred CCcC-ccCCCCcee-------eccceEEEEEccchHHHhcCCeEEEEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHH
Q 011989 276 ASRP-FDCGRDGFV-------IGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQ 347 (473)
Q Consensus 276 ~~~p-fd~~~~G~~-------~geGaaavvL~~~~~A~~~g~~~~a~i~g~~~~~d~~~~~~~~~~~~~~~~a~~~al~~ 347 (473)
.++| ||. +|++ ++|||++|||++++.|+++|.+++++|.|++.+++. |+..+.+...+++++|++
T Consensus 236 ~~rpif~~--~G~vt~~~~~~~~dGAaavvL~s~~~A~~~g~~~~a~i~g~~~~~~~-----p~~~~~~~~~a~~~al~~ 308 (401)
T 1ulq_A 236 ALRPVFRE--GGTVTAGNSSPLNDGAAAVLLVSDDYAKAHGLRPLARVRAIAVAGVP-----PRIMGIGPVPATRKALER 308 (401)
T ss_dssp HSCBSSST--TCSCBGGGBCCCEEEEEEEEEEEHHHHHHTTCCCSEEEEEEEEEECC-----GGGGGGTHHHHHHHHHHH
T ss_pred hCCCccCC--CCCeechhcCCccchheEEEEecHHHHHHcCCCceEEEEEEEEecCC-----ccccchhHHHHHHHHHHH
Confidence 3456 764 6777 799999999999999999999999999999998863 333345668999999999
Q ss_pred cCCCCCCccEEEEcCCCCCCCCHHHHHHHHHHhhcccCCCCceeeccccchhhhHHhHHHHHHHHHHHHHHhCccCCCCC
Q 011989 348 SGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLAIHHGVAPLTLN 427 (473)
Q Consensus 348 agl~~~dId~v~~hgtgt~~~D~~E~~a~~~~~~~~~~~~~~~v~s~k~~~Gh~~~AsG~~~li~~~~~l~~~~ipp~~~ 427 (473)
+|++++||||||+|.+.+. .|...++. |+......+++++..+..+||++||+|+.++++++++|+++
T Consensus 309 Agl~~~dId~ie~heafa~----~~l~~~~~-lg~~~~~~~vn~~Gg~~a~GHp~gAsG~~~~~~~~~~L~~~------- 376 (401)
T 1ulq_A 309 AGLSFSDLGLIELNEAFAA----QALAVLRE-WSLSMEDQRLNPNGGAIALGHPLGASGARILTTLVHEMRRR------- 376 (401)
T ss_dssp TTCCGGGCSEEEECCSBHH----HHHHHHHH-HTCCTTCTTBSTTCCHHHHCCCHHHHHHHHHHHHHHHHHHT-------
T ss_pred cCCCHHHcCEEEEecchHH----HHHHHHHH-cCCCCCCCccCCCCcccccCCCcchHHHHHHHHHHHHHhhc-------
Confidence 9999999999999955543 24444433 34311123556666666899999999999999999999985
Q ss_pred CCCCCCCCCCCCCccccCCCCCCcEEEEeccccccceeeEEEeec
Q 011989 428 LAKPDPIFNDNFMPLTASKDMPISAALSNSFGFGGTNASLLFTKC 472 (473)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~g~gG~~~~~vl~~~ 472 (473)
+.+++|++++++||.++++||+++
T Consensus 377 ---------------------~~~~gl~~~~~ggG~~~a~v~~~~ 400 (401)
T 1ulq_A 377 ---------------------KVQFGLATMCIGVGQGIAVVVEGM 400 (401)
T ss_dssp ---------------------TCSEEEEEEEETTTEEEEEEEEEC
T ss_pred ---------------------CCCEEEEEeecCCcccEEEEEEeC
Confidence 257999999999999999999985
|
| >1wl4_A Acetyl-coenzyme A acetyltransferase 2; thiolase fold; HET: COA; 1.55A {Homo sapiens} PDB: 1wl5_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-35 Score=293.84 Aligned_cols=270 Identities=23% Similarity=0.326 Sum_probs=214.8
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCceeEEEecCCCChhhHHHHHHHHHHhccccCCCcchhhhhhhHHHHHHHHhcC
Q 011989 129 FIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYG 208 (473)
Q Consensus 129 ~~~la~~aa~~Al~dAgl~~~~~~~~~~~gvivg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lg 208 (473)
..+|+++|+++||+|||+++++++ ++++|+..+... ...++.+++..||
T Consensus 30 ~~~L~~~a~~~Al~dAGl~~~~id-----~v~~g~~~~~~~--------------------------~~~~a~~ia~~lg 78 (397)
T 1wl4_A 30 VQDLGSTVIKEVLKRATVAPEDVS-----EVIFGHVLAAGC--------------------------GQNPVRQASVGAG 78 (397)
T ss_dssp HHHHHHHHHHHHHHHHTCCGGGCC-----EEEEECSCCTTS--------------------------CSCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCC-----EEEEEecCCCCC--------------------------CCHHHHHHHHHcC
Confidence 368999999999999999887776 789988654211 1346779999999
Q ss_pred C--CCCeeeecCCcchHHHHHHHHHHHHHcCCCCEEEEeecCCCcCh-HHH--------------H-----H----H--h
Q 011989 209 F--QGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDA-LSM--------------A-----G----F--C 260 (473)
Q Consensus 209 l--~Gp~~~v~~acasg~~Al~~A~~~I~~G~~d~vlv~g~d~~~~~-~~~--------------~-----~----~--~ 260 (473)
+ ++|+++|+++|+|++.||.+|+++|++|++|++||+|+|.++.. ... . . + .
T Consensus 79 l~~~~p~~~v~~aCaSg~~Ai~~A~~~I~~G~~d~vlagG~e~~s~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 158 (397)
T 1wl4_A 79 IPYSVPAWSCQMICGSGLKAVCLAVQSIGIGDSSIVVAGGMENMSKAPHLAYLRTGVKIGEMPLTDSILCDGLTDAFHNC 158 (397)
T ss_dssp CCTTSCEEEECCGGGHHHHHHHHHHHHHHTTSCSEEEEEEEEESTTCCEECCCSSCCSSSCCCCEEHHHHHTTBCTTTCC
T ss_pred CCCCccEEEecCcChhHHHHHHHHHHHHHCCCCCEEEEEEEeecCCCccccccccccccCcccccchhccccccCccccc
Confidence 9 79999999999999999999999999999999999999986531 100 0 0 0 0
Q ss_pred hhhcccc-------------------------------cc-------------------CCCCCC---------CCcC-c
Q 011989 261 KSRALTT-------------------------------KY-------------------NGTPQE---------ASRP-F 280 (473)
Q Consensus 261 ~~~~~~~-------------------------------~~-------------------~~~~~~---------~~~p-f 280 (473)
.++.+++ .+ .+.+.. .++| |
T Consensus 159 ~~g~~a~~~~~~~g~tre~~~~~a~~s~~~A~~a~~~g~~~~ei~pv~~~~~~~~~~~~~d~~~r~~~t~e~~~~~rpvf 238 (397)
T 1wl4_A 159 HMGITAENVAKKWQVSREDQDKVAVLSQNRTENAQKAGHFDKEIVPVLVSTRKGLIEVKTDEFPRHGSNIEAMSKLKPYF 238 (397)
T ss_dssp BHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTTTTTTBCCEEEEETTEEEEECSCSCCCTTCCHHHHHTSCCSS
T ss_pred hHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhHhcCCcccceeeeeeccCCCceeeccccccCCCCCHHHHhcCCCcc
Confidence 0111100 00 011111 4889 9
Q ss_pred cCCCCcee-------eccceEEEEEccchHHHhcCCeEEEEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHHcCCCCC
Q 011989 281 DCGRDGFV-------IGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSH 353 (473)
Q Consensus 281 d~~~~G~~-------~geGaaavvL~~~~~A~~~g~~~~a~i~g~~~~~d~~~~~~~~~~~~~~~~a~~~al~~agl~~~ 353 (473)
|.+++|++ ++||+++|||++++.|+++|.+++++|.|++.+++ .|++...+...+++++|+++|++++
T Consensus 239 d~~~~G~vt~~~~s~~~dGAaavvL~s~~~A~~~g~~~~a~i~g~~~~~~-----~p~~~~~~~~~a~~~al~~Agl~~~ 313 (397)
T 1wl4_A 239 LTDGTGTVTPANASGINDGAAAVVLMKKSEADKRGLTPLARIVSWSQVGV-----EPSIMGIGPIPAIKQAVTKAGWSLE 313 (397)
T ss_dssp CCSSCCCCCTTSBCCCEEEEEEEEEEEHHHHHHTTCCCSEEEEEEEEEEC-----CGGGGGGTHHHHHHHHHHHHTCCGG
T ss_pred CCCCCCCEechhcCCccchhheeeEecHHHHHHcCCCccEEEEEEEEeec-----ChhhccchHHHHHHHHHHHcCCCHH
Confidence 99999999 99999999999999999999999999999999873 4555556778999999999999999
Q ss_pred CccEEEEcCCCCCCCCHHHH--HHHHHHhhcccCCCCceeeccccchhhhHHhHHHHHHHHHHHHHHhCccCCCCCCCCC
Q 011989 354 QVDYVNAHATSTPLGDTVEA--TAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLAIHHGVAPLTLNLAKP 431 (473)
Q Consensus 354 dId~v~~hgtgt~~~D~~E~--~a~~~~~~~~~~~~~~~v~s~k~~~Gh~~~AsG~~~li~~~~~l~~~~ipp~~~~~~~ 431 (473)
||||||+| |..|. .++.+.|+... .++++++.|.++||++||+|+.++++++++|+++
T Consensus 314 dId~ie~~-------d~f~~~~l~~~~~lg~~~--~~vn~~gg~~~~GHp~gAsG~~~~~~~~~~L~~~----------- 373 (397)
T 1wl4_A 314 DVDIFEIN-------EAFAAVSAAIVKELGLNP--EKVNIEGGAIALGHPLGASGCRILVTLLHTLERM----------- 373 (397)
T ss_dssp GCCEEEEC-------CSBHHHHHHHHHHHTCCG--GGBSTTCCHHHHCCCHHHHHHHHHHHHHHHHHHH-----------
T ss_pred HCCEEEEe-------cccHHHHHHHHHHcCCCC--cCcCCCcCccccCCChhhhHHHHHHHHHHHHhhc-----------
Confidence 99999998 33344 33667777542 3688899999999999999999999999999973
Q ss_pred CCCCCCCCCccccCCCCCCcEEEEeccccccceeeEEEee
Q 011989 432 DPIFNDNFMPLTASKDMPISAALSNSFGFGGTNASLLFTK 471 (473)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~~~l~~s~g~gG~~~~~vl~~ 471 (473)
+.+++|+++.+.||...++||++
T Consensus 374 -----------------~~~~gl~~~~~ggG~~~a~~~e~ 396 (397)
T 1wl4_A 374 -----------------GRSRGVAALCIGGGMGIAMCVQR 396 (397)
T ss_dssp -----------------TCCEEEEEEEETTTEEEEEEEEE
T ss_pred -----------------CCCEEEEEEecccchheEEEEEe
Confidence 24688888888899999999987
|
| >1wdk_C 3-ketoacyl-COA thiolase; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: c.95.1.1 c.95.1.1 PDB: 1wdl_C* 1wdm_C* 2d3t_C* | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-35 Score=295.40 Aligned_cols=276 Identities=19% Similarity=0.268 Sum_probs=215.5
Q ss_pred HHHHHHHHHHHHHHHc-CCCCCCCCCCCceeEEEecCCCChhhHHHHHHHHHHhccccCCCcchhhhhhhHHHHHHHHhc
Q 011989 129 FIAYALCAADEALHDA-KWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKY 207 (473)
Q Consensus 129 ~~~la~~aa~~Al~dA-gl~~~~~~~~~~~gvivg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~l 207 (473)
..+|+++++++||+|| |+++++++ +|++|+..+... ..+.++.+++..|
T Consensus 30 ~~~L~~~a~~~AL~dA~gl~~~~id-----~v~~g~~~~~~~-------------------------~~~~~a~~ia~~l 79 (390)
T 1wdk_C 30 AEDMSAHLISKVLERNSKVDPGEVE-----DVIWGCVNQTLE-------------------------QGWNIARMASLMT 79 (390)
T ss_dssp HHHHHHHHHHHHHHHCTTSCGGGEE-----EEEEECSSBSBT-------------------------TTTTHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHhccCCCHHHCC-----EEEEEeeccccC-------------------------CCCcHHHHHHHHc
Confidence 4789999999999999 99877665 899998653211 1245788999999
Q ss_pred CC--CCCeeeecCCcchHHHHHHHHHHHHHcCCCCEEEEeecCCCcC-hHHH------------------HHHhhhhc--
Q 011989 208 GF--QGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSID-ALSM------------------AGFCKSRA-- 264 (473)
Q Consensus 208 gl--~Gp~~~v~~acasg~~Al~~A~~~I~~G~~d~vlv~g~d~~~~-~~~~------------------~~~~~~~~-- 264 (473)
|+ ++|+++++++|+|++.||.+|+++|++|++|++||+|+|.++. +... ......+.
T Consensus 80 gl~~~~p~~~v~~aCaS~~~Al~~A~~~I~~G~~d~vlvgG~e~~s~~p~~~~~~~~~~~~~~~~~~~~~~g~~a~~~~~ 159 (390)
T 1wdk_C 80 QIPHTSAAQTVSRLCGSSMSALHTAAQAIMTGNGDVFVVGGVEHMGHVSMMHGVDPNPHMSLYAAKASGMMGLTAEMLGK 159 (390)
T ss_dssp SSCTTSEEEEEECGGGHHHHHHHHHHHHHHTTSCSEEEEEEEEETTTSCTTTTBCCCGGGGGTSCGGGGSHHHHHHHHHH
T ss_pred CCCCCccEEEEcccchhHHHHHHHHHHHHHcCCCCEEEEeeeeccccCCcccccccCccccccCCcchhHHHHHHHHHHH
Confidence 99 8999999999999999999999999999999999999997643 2110 01100000
Q ss_pred ---cccc---------------------cCCC--C------CCCCcCccCC---------------------CCcee---
Q 011989 265 ---LTTK---------------------YNGT--P------QEASRPFDCG---------------------RDGFV--- 288 (473)
Q Consensus 265 ---~~~~---------------------~~~~--~------~~~~~pfd~~---------------------~~G~~--- 288 (473)
++.. +..+ | .+.++|||.+ ++|++
T Consensus 160 ~~g~s~e~~~~~a~~s~~~a~~a~~~g~~~~ei~p~~~~~~~~~~~~fd~d~~~r~~~t~e~~~~~~~i~~p~~G~vt~~ 239 (390)
T 1wdk_C 160 MHGISREQQDAFAVRSHQLAHKATVEGKFKDEIIPMQGYDENGFLKIFDYDETIRPDTTLESLAALKPAFNPKGGTVTAG 239 (390)
T ss_dssp HHTCCHHHHHHHHHHHHHHHHHHHHTTTTTTTBCCEEEECTTCCEEEECSCTTCCTTCCHHHHHTSCCSSCTTTCCCCGG
T ss_pred HhCCCHHHHHHHHHHHHHHHHHHHhcCCcccceeeeeeccCCCcceeeccccccCCCCCHHHHhcCCCcccCCCCcEech
Confidence 1100 0000 1 1122689887 79999
Q ss_pred ----eccceEEEEEccchHHHhcCCeEEEEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEEEEcCCC
Q 011989 289 ----IGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYVNAHATS 364 (473)
Q Consensus 289 ----~geGaaavvL~~~~~A~~~g~~~~a~i~g~~~~~d~~~~~~~~~~~~~~~~a~~~al~~agl~~~dId~v~~hgtg 364 (473)
++||+++|||++++.|+++|.+++++|.|++.+++ .|++...+...+++++|+++|++++||||||+|.+.
T Consensus 240 ~~~~~~dGAaavvL~s~~~A~~~g~~~~a~I~g~~~~~~-----~p~~~~~~~~~a~~~al~~Agl~~~dId~ve~~d~f 314 (390)
T 1wdk_C 240 TSSQITDGASCMIVMSAQRAKDLGLEPLAVIRSMAVAGV-----DPAIMGYGPVPATQKALKRAGLNMADIDFIELNEAF 314 (390)
T ss_dssp GBCCCEEEEEEEEEEEHHHHHHTTCCCSEEEEEEEEEEC-----CGGGGGGTHHHHHHHHHHHHTCCGGGCCEEEECCSB
T ss_pred hcCcccchhheeEEecHHHHHHcCCCccEEEEEEEEecc-----ChhhcchhHHHHHHHHHHHcCCChhhCcEEEeccCC
Confidence 99999999999999999999999999999999874 344445667899999999999999999999999776
Q ss_pred CCCCCHHHHHHHHHHhhcccC-CCCceeeccccchhhhHHhHHHHHHHHHHHHHHhCccCCCCCCCCCCCCCCCCCCccc
Q 011989 365 TPLGDTVEATAIRTVFSDHAT-SGSLAFSSTKGAIGHLLGAAGAVEAIFAVLAIHHGVAPLTLNLAKPDPIFNDNFMPLT 443 (473)
Q Consensus 365 t~~~D~~E~~a~~~~~~~~~~-~~~~~v~s~k~~~Gh~~~AsG~~~li~~~~~l~~~~ipp~~~~~~~~~~~~~~~~~~~ 443 (473)
+. |..++.+.|+.... ..++++++.|.++||++||+|+.++++++++|+++
T Consensus 315 ~~-----~~~~~~~~lg~~~~~~~~vn~~gg~~~~GHp~gasG~~~~~~~~~~L~~~----------------------- 366 (390)
T 1wdk_C 315 AA-----QALPVLKDLKVLDKMNEKVNLHGGAIALGHPFGCSGARISGTLLNVMKQN----------------------- 366 (390)
T ss_dssp HH-----HHHHHHHHTTCGGGHHHHBSTTCCHHHHCCCHHHHHHHHHHHHHHHHHHT-----------------------
T ss_pred HH-----HHHHHHHHcCCCCCCCCcCCCCcCcccccCCcchhHHHHHHHHHHHHhhc-----------------------
Confidence 53 56666777764310 12567788899999999999999999999999974
Q ss_pred cCCCCCCcEEEEeccccccceeeEEEeec
Q 011989 444 ASKDMPISAALSNSFGFGGTNASLLFTKC 472 (473)
Q Consensus 444 ~~~~~~~~~~l~~s~g~gG~~~~~vl~~~ 472 (473)
+.++.++.+.+.||.+.++||++.
T Consensus 367 -----~~~~gl~~~~~ggG~~~a~~~~~~ 390 (390)
T 1wdk_C 367 -----GGTFGLSTMCIGLGQGIATVFERV 390 (390)
T ss_dssp -----TCSEEEEEEEETTTEEEEEEEECC
T ss_pred -----CCCEEEEEecccchheEEEEEEeC
Confidence 235778888888999999999863
|
| >2wu9_A 3-ketoacyl-COA thiolase 2, peroxisomal; cysteine oxidation, fatty acid metabolism, oxylipin biosynthesis, plant lipid metabolism; 1.50A {Arabidopsis thaliana} PDB: 2c7y_A 2c7z_A 2wua_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-33 Score=287.56 Aligned_cols=274 Identities=19% Similarity=0.275 Sum_probs=209.3
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCceeEEEecCCCChhhHHHHHHHHHHhccccCCCcchhhhhhhHHHHHHHHhcC
Q 011989 129 FIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYG 208 (473)
Q Consensus 129 ~~~la~~aa~~Al~dAgl~~~~~~~~~~~gvivg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lg 208 (473)
..+|+++|+++||+|||+++.+++ +|++|+..++.. ..+.++.+++..||
T Consensus 55 ~~~La~~Aa~~AL~dAGl~~~~Id-----~vi~g~~~~~~~-------------------------~~~~~a~~va~~lG 104 (442)
T 2wu9_A 55 PDDLLAPVLRALIEKTNLNPSEVG-----DIVVGTVLAPGS-------------------------QRASECRMAAFYAG 104 (442)
T ss_dssp HHHHHHHHHHHHHHHHTCCGGGCC-----CEEEECCSSBHH-------------------------HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCC-----EEEEEeecCccC-------------------------CCChHHHHHHHHcC
Confidence 468999999999999999888776 799998653211 12456789999999
Q ss_pred C--CCCeeeecCCcchHHHHHHHHHHHHHcCCCCEEEEeecCCCcChH--------------HH-------HHH------
Q 011989 209 F--QGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDAL--------------SM-------AGF------ 259 (473)
Q Consensus 209 l--~Gp~~~v~~acasg~~Al~~A~~~I~~G~~d~vlv~g~d~~~~~~--------------~~-------~~~------ 259 (473)
+ ++|+++|+++|+|++.||.+|+++|++|++|+|||+|+|.++... .+ ...
T Consensus 105 l~~~~p~~~v~~aCaSg~~Al~~A~~~I~sG~~d~vLvgG~e~~s~~p~~~~~~~~~~~~~~~~~~~~~~~mg~~A~~~~ 184 (442)
T 2wu9_A 105 FPETVAVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMTTNPMAWEGSVNPAVKKFAQAQNCLLPMGVTSENVA 184 (442)
T ss_dssp CCTTSCEEEEECGGGHHHHHHHHHHHHHHTTSCSEEEEEEEEETTTSCCCCCSCCCGGGGGCHHHHHTTSCHHHHHHHHH
T ss_pred CCCCceEEEeCCcCHHHHHHHHHHHHHHHCCCCCEEEEEEEeecCCCccccccccchhhhhccccccchhHHHHHHHHHH
Confidence 9 789999999999999999999999999999999999999765411 00 000
Q ss_pred ----------------hh--------hhccccccC------------------CCCCC------------CCcC-ccCCC
Q 011989 260 ----------------CK--------SRALTTKYN------------------GTPQE------------ASRP-FDCGR 284 (473)
Q Consensus 260 ----------------~~--------~~~~~~~~~------------------~~~~~------------~~~p-fd~~~ 284 (473)
+. .+.+..... ...++ .++| |+.
T Consensus 185 ~~~gisre~~~~~A~~s~~~A~~~p~ag~~~~ei~pv~~~~~~~~~~~~~~~~~~~De~~r~~~t~e~~~~~rpvfd~-- 262 (442)
T 2wu9_A 185 QRFGVSRQEQDQAAVDSHRKAAAATAAGKFKDEIIPVKTKLVDPKTGDEKPITVSVDDGIRPTTTLASLGKLKPVFKK-- 262 (442)
T ss_dssp HHHTCCHHHHHHHHHHHHHHHHHHHHTTTTTTTBCCEEEEEECTTTCCEEEEEECSCTTCCTTCCHHHHHTSCCSSCT--
T ss_pred HHhCCCHHHHHHHHHHHHHHHHhChhcccccccccceeeccccccccccCceeeecccCcCCCCCHHHHhcCCCccCC--
Confidence 00 001100000 00011 3445 764
Q ss_pred Ccee-------eccceEEEEEccchHHHhcCCeEEEEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccE
Q 011989 285 DGFV-------IGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDY 357 (473)
Q Consensus 285 ~G~~-------~geGaaavvL~~~~~A~~~g~~~~a~i~g~~~~~d~~~~~~~~~~~~~~~~a~~~al~~agl~~~dId~ 357 (473)
+|++ ++||+++|||++++.|+++|.+|+++|.|++.+.+ .|+....+...+++++|+++|++++||||
T Consensus 263 ~G~vt~~n~s~~~DGAaavvL~s~e~A~~~g~~~~a~I~g~~~~~~-----~p~~~~~~~~~A~~~Al~~AGl~~~DId~ 337 (442)
T 2wu9_A 263 DGTTTAGNSSQVSDGAGAVLLMKRSVAMQKGLPVLGVFRTFAAVGV-----DPAIMGIGPAVAIPAAVKAAGLELDDIDL 337 (442)
T ss_dssp TCCCCGGGBCCCEEEEEEEEEEEHHHHHHHTCCCCEEEEEEEEEEC-----CGGGGGGHHHHHHHHHHHHTTCCGGGCCE
T ss_pred CCCeechhcCCCCCceEEEEEeeHHHHHHcCCCceEEEEEEEEecC-----CchhcchHHHHHHHHHHHHcCCCHHHCCE
Confidence 6777 69999999999999999999999999999999886 34444567789999999999999999999
Q ss_pred EEEcCCCCCCCCHHHHHHHHHHhhcccCCCCceeeccccchhhhHHhHHHHHHHHHHHHHHhCccCCCCCCCCCCCCCCC
Q 011989 358 VNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLAIHHGVAPLTLNLAKPDPIFND 437 (473)
Q Consensus 358 v~~hgtgt~~~D~~E~~a~~~~~~~~~~~~~~~v~s~k~~~Gh~~~AsG~~~li~~~~~l~~~~ipp~~~~~~~~~~~~~ 437 (473)
||+|+++|.. |..+++. |+... .++.++..+..+||++||+|+.++++++++|+++. |
T Consensus 338 iE~h~aft~~----~l~~~~~-lG~~~--~~vN~~GG~~a~GHp~GAsG~~~~~~~v~~Lr~~~-~-------------- 395 (442)
T 2wu9_A 338 FEINEAFASQ----FVYCRNK-LGLDP--EKINVNGGAMAIGHPLGATGARCVATLLHEMKRRG-K-------------- 395 (442)
T ss_dssp EEECCSBHHH----HHHHHHH-HTCCG--GGBSTTCCHHHHCCCHHHHHHHHHHHHHHHHHHHC-T--------------
T ss_pred EEEeCCChHH----HHHHHHH-hCCCC--CCcCCCccHhhcCCchhHHHHHHHHHHHHHHhccC-C--------------
Confidence 9999998864 7777754 45321 13444444448999999999999999999999853 0
Q ss_pred CCCccccCCCCCCcEEEE-eccccccceeeEEEeecC
Q 011989 438 NFMPLTASKDMPISAALS-NSFGFGGTNASLLFTKCQ 473 (473)
Q Consensus 438 ~~~~~~~~~~~~~~~~l~-~s~g~gG~~~~~vl~~~~ 473 (473)
+.+++|+ +++| ||.|+++||++++
T Consensus 396 -----------~~~~glas~~~G-GG~~~a~v~~~~~ 420 (442)
T 2wu9_A 396 -----------DCRFGVVSMCIG-TGMGAAAVFERGD 420 (442)
T ss_dssp -----------TCCEEEEEEEET-TTEEEEEEEEECS
T ss_pred -----------CCCEEEEEeecc-cchheEEEEEecc
Confidence 3568885 5677 8999999999874
|
| >2vu1_A Acetyl-COA acetyltransferase; acyltransferase, PHB biosynthesis, thiolase FOL; HET: CSO OPI; 1.51A {Zoogloea ramigera} PDB: 1nl7_A* 1ou6_A* 2vu0_A* 1m4s_A* 2vu2_A* 2wkv_A* 2wku_A* 1m1t_A 1m3k_A 1m1o_A 1m3z_A* 2vtz_A* 2wl5_A* 2wkt_A* 2wl4_A* 1m4t_A* 2wl6_A 1qfl_A* 1dlv_A* 1dlu_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-34 Score=289.49 Aligned_cols=270 Identities=20% Similarity=0.284 Sum_probs=210.5
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCceeEEEecCCCChhhHHHHHHHHHHhccccCCCcchhhhhhhHHHHHHHHhcC
Q 011989 129 FIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYG 208 (473)
Q Consensus 129 ~~~la~~aa~~Al~dAgl~~~~~~~~~~~gvivg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lg 208 (473)
..+|+++++++||+|||+++++++ ++++|+..+.. ....++.+++..+|
T Consensus 27 ~~~L~~~a~~~Al~dAgl~~~~id-----~~~~g~~~~~~--------------------------~~~~~a~~ia~~lg 75 (392)
T 2vu1_A 27 AHELGATVISAVLERAGVAAGEVN-----EVILGQVLPAG--------------------------EGQNPARQAAMKAG 75 (392)
T ss_dssp HHHHHHHHHHHHHHHHTCCGGGCC-----EEEEECSCCTT--------------------------SCSCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCC-----EEEEEecCCCC--------------------------CCcHHHHHHHHHcC
Confidence 468999999999999999887776 78888755321 01346789999999
Q ss_pred CC--CCeeeecCCcchHHHHHHHHHHHHHcCCCCEEEEeecCCCcChHHH----H--------HHh--------------
Q 011989 209 FQ--GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSM----A--------GFC-------------- 260 (473)
Q Consensus 209 l~--Gp~~~v~~acasg~~Al~~A~~~I~~G~~d~vlv~g~d~~~~~~~~----~--------~~~-------------- 260 (473)
++ +|+++++++|+|++.||.+|+++|++|++|+|||+|+|.++..... . .+.
T Consensus 76 l~~~~p~~~v~~aCaSgl~Al~~A~~~I~~G~~d~vlvgG~e~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (392)
T 2vu1_A 76 VPQEATAWGMNQLCGSGLRAVALGMQQIATGDASIIVAGGMESMSMAPHCAHLRGGVKMGDFKMIDTMIKDGLTDAFYGY 155 (392)
T ss_dssp CCTTSEEEEEECGGGHHHHHHHHHHHHHHTTSCSCEEEEEEEESTTCCEEECCTTCCCSSCEEEEEHHHHHHTBCTTTCC
T ss_pred CCCCceEEEecccchHHHHHHHHHHHHHHCCCCCEEEEEEEeccCCCccccccccccccCcccccchhhhcccccccccc
Confidence 99 8999999999999999999999999999999999999976541110 0 000
Q ss_pred hhhcc----------cc---------------------ccCCC--C-----CCCCcCccCC-------------------
Q 011989 261 KSRAL----------TT---------------------KYNGT--P-----QEASRPFDCG------------------- 283 (473)
Q Consensus 261 ~~~~~----------~~---------------------~~~~~--~-----~~~~~pfd~~------------------- 283 (473)
.++.+ +. .+..+ | ...++|||.+
T Consensus 156 ~~~~~a~~~~~~~g~s~e~~~~~a~~s~~~A~~~~~ag~~~~ei~p~~~~~~~~~~~f~~d~~~r~~~t~e~~~~~~~v~ 235 (392)
T 2vu1_A 156 HMGTTAENVAKQWQLSRDEQDAFAVASQNKAEAAQKDGRFKDEIVPFIVKGRKGDITVDADEYIRHGATLDSMAKLRPAF 235 (392)
T ss_dssp BHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHTTTTTTBCCEEECCTTCCEEECSCSSCCTTCCHHHHHTCCCSS
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhHhcCCccceeeeeeeccCCCceeeccccccCCCCCHHHHhcCCCcc
Confidence 01111 00 00000 0 0126788877
Q ss_pred -CCcee-------eccceEEEEEccchHHHhcCCeEEEEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCc
Q 011989 284 -RDGFV-------IGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQV 355 (473)
Q Consensus 284 -~~G~~-------~geGaaavvL~~~~~A~~~g~~~~a~i~g~~~~~d~~~~~~~~~~~~~~~~a~~~al~~agl~~~dI 355 (473)
++|++ ++||++++||++++.|+++|.+++++|.|++.+.+ .|+....+...+++++|+++|++++||
T Consensus 236 ~~~g~vt~~~~~~~~dGAaavvL~s~~~A~~~g~~~~a~i~g~~~~~~-----~p~~~~~~~~~a~~~al~~agl~~~dI 310 (392)
T 2vu1_A 236 DKEGTVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGV-----DPKVMGTGPIPASRKALERAGWKIGDL 310 (392)
T ss_dssp CTTCCCCSSSBCCCEEEEEEEEEEEHHHHHHHTCCCSEEEEEEEEEEC-----CGGGGGGTHHHHHHHHHHHHTCCGGGC
T ss_pred CCCCCeeCcccCCccChhheeeEecHHHHHhcCCCccEEEEEEEEeec-----ChhhcchhHHHHHHHHHHHcCCCHHHc
Confidence 77999 99999999999999999999999999999998873 344455667899999999999999999
Q ss_pred cEEEEcCCCCCCCCHHHHHH--HHHHhhcccCCCCceeeccccchhhhHHhHHHHHHHHHHHHHHhCccCCCCCCCCCCC
Q 011989 356 DYVNAHATSTPLGDTVEATA--IRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLAIHHGVAPLTLNLAKPDP 433 (473)
Q Consensus 356 d~v~~hgtgt~~~D~~E~~a--~~~~~~~~~~~~~~~v~s~k~~~Gh~~~AsG~~~li~~~~~l~~~~ipp~~~~~~~~~ 433 (473)
||||+| |..|..+ +.+.|+... .++++++.|.++||++||+|+.++++++++|+++
T Consensus 311 d~ie~~-------d~f~~~~l~~~~~lg~~~--~~vn~~gg~~~~GHp~gAsG~~~~~~~~~~L~~~------------- 368 (392)
T 2vu1_A 311 DLVEAN-------EAFAAQACAVNKDLGWDP--SIVNVNGGAIAIGHPIGASGARILNTLLFEMKRR------------- 368 (392)
T ss_dssp SEEEEC-------CSBHHHHHHHHHHHCCCG--GGBSTTCCHHHHCCCGGGHHHHHHHHHHHHHHHH-------------
T ss_pred CEEEec-------cccHHHHHHHHHHcCCCc--ccCCCCccHhhhCCChhhHHHHHHHHHHHHHhcc-------------
Confidence 999999 5555555 355666432 3678889999999999999999999999999973
Q ss_pred CCCCCCCccccCCCCCCcEEEEeccccccceeeEEEee
Q 011989 434 IFNDNFMPLTASKDMPISAALSNSFGFGGTNASLLFTK 471 (473)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~l~~s~g~gG~~~~~vl~~ 471 (473)
..+++|++....||.+.++||++
T Consensus 369 ---------------~~~~gl~~~~~ggG~~~a~~~e~ 391 (392)
T 2vu1_A 369 ---------------GARKGLATLCIGGGMGVAMCIES 391 (392)
T ss_dssp ---------------TCSEEEEEEEETTTEEEEEEEEC
T ss_pred ---------------CCCEEEEEEecccchheEEEEEe
Confidence 23578876655689999999986
|
| >2iik_A 3-ketoacyl-COA thiolase, peroxisomal; fatty acid metabolism, structural genomics, structural genom consortium, SGC, transferase; 2.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-33 Score=280.61 Aligned_cols=272 Identities=20% Similarity=0.250 Sum_probs=212.9
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCceeEEEecCCCChhhHHHHHHHHHHhccccCCCcchhhhhhhHHHHHHHHhcC
Q 011989 129 FIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYG 208 (473)
Q Consensus 129 ~~~la~~aa~~Al~dAgl~~~~~~~~~~~gvivg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lg 208 (473)
..+|+++|+++||+|||+++++++ +|++|+..+.. ..+..+..++..+|
T Consensus 55 ~~~L~~~Aa~~AL~dAgl~~~~id-----~v~~g~~~~~~--------------------------~~~~~a~~~a~~lG 103 (418)
T 2iik_A 55 PDELLSAVMTAVLKDVNLRPEQLG-----DICVGNVLQPG--------------------------AGAIMARIAQFLSD 103 (418)
T ss_dssp HHHHHHHHHHHHHHHHTCCGGGCC-----CEEEECSSSBG--------------------------GGHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCC-----EEEEEecCCcc--------------------------ccccHHHHHHHHcC
Confidence 578999999999999999988876 89999865321 12345567788899
Q ss_pred C--CCCeeeecCCcchHHHHHHHHHHHHHcCCCCEEEEeecCCCcChHH---------H------------HHH---hh-
Q 011989 209 F--QGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALS---------M------------AGF---CK- 261 (473)
Q Consensus 209 l--~Gp~~~v~~acasg~~Al~~A~~~I~~G~~d~vlv~g~d~~~~~~~---------~------------~~~---~~- 261 (473)
+ ++|+++|+++|+|++.||.+|+++|++|++|++||+|+|.++.... + ..+ ..
T Consensus 104 l~~~~p~~~v~~aCss~~~Al~~A~~~I~~G~~d~vLv~G~e~~s~~p~~~~~~~~~~~~~~~~~~~~~~~~g~~a~~~a 183 (418)
T 2iik_A 104 IPETVPLSTVNRQCSSGLQAVASIAGGIRNGSYDIGMACGVESMSLADRGNPGNITSRLMEKEKARDCLIPMGITSENVA 183 (418)
T ss_dssp CCTTSCEEEEECGGGHHHHHHHHHHHHHHTTSCSEEEEEEEEETTTCC-----CCCTTGGGCHHHHGGGSCHHHHHHHHH
T ss_pred CCCCceEEEeCCCCHHHHHHHHHHHHHHHCCCCCEEEEeccccCccCCccCCcccchhhhcccccccccccHHHHHHHHH
Confidence 9 7899999999999999999999999999999999999998754210 0 000 00
Q ss_pred --------------------------hhcccccc-----------------CCCCCCCCcC-------------ccCCC-
Q 011989 262 --------------------------SRALTTKY-----------------NGTPQEASRP-------------FDCGR- 284 (473)
Q Consensus 262 --------------------------~~~~~~~~-----------------~~~~~~~~~p-------------fd~~~- 284 (473)
.+.+.... ...+++.+|| ||.++
T Consensus 184 ~~~gitre~~~~~a~~s~~~A~~a~~~g~~~~ei~pv~~~~~~~~~~~~~~~~~~d~~~rp~~t~e~l~~~~~vfd~~~~ 263 (418)
T 2iik_A 184 ERFGISREKQDTFALASQQKAARAQSKGCFQAEIVPVTTTVHDDKGTKRSITVTQDEGIRPSTTMEGLAKLKPAFKKDGS 263 (418)
T ss_dssp HHTTCCHHHHHHHHHHHHHHHHHHHHHTTTTTTBCCEEEEEECTTSCEEEEEECSCTTCCTTCCHHHHHHCCCSSSTTCC
T ss_pred HHhCCCHHHHHHHHHHHHHHHHhChhcCccccceeeeeeccccccCcccceeeecccCcCCCCCHHHHhhCCCcccCCCc
Confidence 00110000 0112567888 98765
Q ss_pred ----CceeeccceEEEEEccchHHHhcCCeEEEEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEEEE
Q 011989 285 ----DGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYVNA 360 (473)
Q Consensus 285 ----~G~~~geGaaavvL~~~~~A~~~g~~~~a~i~g~~~~~d~~~~~~~~~~~~~~~~a~~~al~~agl~~~dId~v~~ 360 (473)
+++.++|||++|||++++.|+++|.+|+++|.|++.+.. .|+..+.+...+++++|+++|++++||||||+
T Consensus 264 ~t~~d~~~~~DGAaavvL~s~~~A~~~g~~~~a~i~g~~~~~~-----~p~~~~~~~~~a~~~al~~Agl~~~dId~vE~ 338 (418)
T 2iik_A 264 TTAGNSSQVSDGAAAILLARRSKAEELGLPILGVLRSYAVVGV-----PPDIMGIGPAYAIPVALQKAGLTVSDVDIFEI 338 (418)
T ss_dssp CCSTTBCCCEEEEEEEEEEEHHHHHHHTCCCCEEEEEEEEEEC-----CGGGGGGHHHHHHHHHHHHHTCCGGGEEEEEE
T ss_pred eeeccccCCCCCceEEEEecHHHHHhcCCCceEEEEEEEeccC-----CchhcchhHHHHHHHHHHHcCCCHHHCCeeee
Confidence 999999999999999999999999999999999988763 44445567788999999999999999999999
Q ss_pred cCCCCCCCCHHHHHHHHHHhhcccCCCCceeecccc--chhhhHHhHHHHHHHHHHHHHHhCccCCCCCCCCCCCCCCCC
Q 011989 361 HATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKG--AIGHLLGAAGAVEAIFAVLAIHHGVAPLTLNLAKPDPIFNDN 438 (473)
Q Consensus 361 hgtgt~~~D~~E~~a~~~~~~~~~~~~~~~v~s~k~--~~Gh~~~AsG~~~li~~~~~l~~~~ipp~~~~~~~~~~~~~~ 438 (473)
|++ +..+|..|.+++ +.. +.+++..++ ++||++||+|+.++++++++|+++-
T Consensus 339 h~a-f~~~~~~~~~~l----g~~----~~~vN~~GG~~a~GHp~GAsG~~~~~~~~~~L~~~~----------------- 392 (418)
T 2iik_A 339 NEA-FASQAAYCVEKL----RLP----PEKVNPLGGAVALGHPLGCTGARQVITLLNELKRRG----------------- 392 (418)
T ss_dssp CCS-BHHHHHHHHHHH----TCC----GGGBCTTCCHHHHCCCHHHHHHHHHHHHHHHHHHHT-----------------
T ss_pred ecc-chHHHHHHHHHc----CCC----ccccCCCCCeeeecCChhhhHHHHHHHHHHHHHhcC-----------------
Confidence 974 445666666554 221 357888885 7999999999999999999998621
Q ss_pred CCccccCCCCCCc-EEEEeccccccceeeEEEeecC
Q 011989 439 FMPLTASKDMPIS-AALSNSFGFGGTNASLLFTKCQ 473 (473)
Q Consensus 439 ~~~~~~~~~~~~~-~~l~~s~g~gG~~~~~vl~~~~ 473 (473)
.+ +.+++..+.||...++||++++
T Consensus 393 -----------~~~~gl~~~c~ggG~g~a~~~e~~~ 417 (418)
T 2iik_A 393 -----------KRAYGVVSMCIGTGMGAAAVFEYPG 417 (418)
T ss_dssp -----------SCEEEEEEEEETTTEEEEEEEEEC-
T ss_pred -----------CCeeeEEEEeeccchhheEEEeccC
Confidence 23 7888888889999999999863
|
| >1afw_A 3-ketoacetyl-COA thiolase; fatty acid metabolism; 1.80A {Saccharomyces cerevisiae} SCOP: c.95.1.1 c.95.1.1 PDB: 1pxt_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-32 Score=277.50 Aligned_cols=270 Identities=18% Similarity=0.207 Sum_probs=202.9
Q ss_pred HHHHHHHHHHHHHHHcC----CCCCCCCCCCceeEEEecCCCChhhHHHHHHHHHHhccccCCCcchhhhhhhHHHHHHH
Q 011989 129 FIAYALCAADEALHDAK----WLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVS 204 (473)
Q Consensus 129 ~~~la~~aa~~Al~dAg----l~~~~~~~~~~~gvivg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia 204 (473)
..+|+++|+++||+||| +++++++ +|++|+..++ ...+.++.+++
T Consensus 35 ~~~La~~Aa~~Al~~Ag~~~~l~~~~id-----~v~~g~~~~~--------------------------~~~~~~a~~va 83 (393)
T 1afw_A 35 TDYLLYNFLNEFIGRFPEPLRADLNLIE-----EVACGNVLNV--------------------------GAGATEHRAAC 83 (393)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHTCGGGCC-----CEEEECSSSB--------------------------GGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCCCCCHHHCC-----EEEEEecCCC--------------------------CCCChHHHHHH
Confidence 46799999999999999 9888776 7999986532 12356788999
Q ss_pred HhcCC--CCCeeeecCCcchHHHHHHHHHHHHHcCCCCEEEEeecCCCcChHH------------HH--HH-----hhhh
Q 011989 205 MKYGF--QGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALS------------MA--GF-----CKSR 263 (473)
Q Consensus 205 ~~lgl--~Gp~~~v~~acasg~~Al~~A~~~I~~G~~d~vlv~g~d~~~~~~~------------~~--~~-----~~~~ 263 (473)
..+|+ ++|+++|+++|+|++.||.+|+++|++|++|++||+|+|.++.... +. .+ ..++
T Consensus 84 ~~lGl~~~~p~~~v~~aCasg~~Al~~A~~~I~~G~~d~vLv~G~e~~s~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 163 (393)
T 1afw_A 84 LASGIPYSTPFVALNRQCSSGLTAVNDIANKIKVGQIDIGLALGVESMTNNYKNVNPLGMISSEELQKNREAKKCLIPMG 163 (393)
T ss_dssp HHTTCCTTSCEEEEECGGGHHHHHHHHHHHHHHTTSCSEEEEEEEEEHHHHGGGSCTTCSCCCHHHHHCTTGGGGGSCHH
T ss_pred HHcCCCCCceEEEEcCcCHHHHHHHHHHHHHHHCCCCCEEEEEEEEecCCCcccccccccccchhhhhcccccccchhHH
Confidence 99999 7899999999999999999999999999999999999997543111 00 00 0011
Q ss_pred cccc----ccC----------------------------------------CCCCC------------CCcC-ccCCCCc
Q 011989 264 ALTT----KYN----------------------------------------GTPQE------------ASRP-FDCGRDG 286 (473)
Q Consensus 264 ~~~~----~~~----------------------------------------~~~~~------------~~~p-fd~~~~G 286 (473)
.+++ +++ ..+++ .++| ||.++ |
T Consensus 164 ~~a~~~~~~~g~sre~~~~~a~~s~~~A~~~~~ag~f~~ei~P~~~~~~~~~~~d~~~r~~~t~e~~~~~rpvf~~~~-G 242 (393)
T 1afw_A 164 ITNENVAANFKISRKDQDEFAANSYQKAYKAKNEGLFEDEILPIKLPDGSICQSDEGPRPNVTAESLSSIRPAFIKDR-G 242 (393)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTSSTTTBCCEECTTSCEECSCSSCCSCCCHHHHHHCCBSCC----C
T ss_pred HHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhHhcCCccceeeeeeccCCceeccccccCCCCCHHHHhcCCCcccCCC-C
Confidence 1100 000 01122 2456 87544 7
Q ss_pred ee-------eccceEEEEEccchHHHhcCCeEEEEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEEE
Q 011989 287 FV-------IGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYVN 359 (473)
Q Consensus 287 ~~-------~geGaaavvL~~~~~A~~~g~~~~a~i~g~~~~~d~~~~~~~~~~~~~~~~a~~~al~~agl~~~dId~v~ 359 (473)
++ ++||+++|||++++.|+++|.+++++|.|++.+++ .|+....+...+++++|+++|++++||||||
T Consensus 243 ~vt~~~~~~~~dGAaavvL~s~~~A~~~g~~~~a~i~g~~~~~~-----~p~~~~~~~~~a~~~al~~Agl~~~dId~ve 317 (393)
T 1afw_A 243 TTTAGNASQVSDGVAGVLLARRSVANQLNLPVLGRYIDFQTVGV-----PPEIMGVGPAYAIPKVLEATGLQVQDIDIFE 317 (393)
T ss_dssp CCBTTTBCCBEEEEEEEEEEEHHHHHHTTCCCCEEEEEEEEEEC-----CGGGGGGHHHHHHHHHHHHHTCCGGGCSEEE
T ss_pred CeechhcCcccchhheeeEecHHHHHHcCCCccEEEEEEEEecc-----ChhhcchhHHHHHHHHHHHcCCCHHHCCEEE
Confidence 76 89999999999999999999999999999999886 2444456778999999999999999999999
Q ss_pred EcCCCCCCCCHHHHHHHHHHhhcccCCCCceeeccccchhhhHHhHHHHHHHHHHHHHHhCccCCCCCCCCCCCCCCCCC
Q 011989 360 AHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLAIHHGVAPLTLNLAKPDPIFNDNF 439 (473)
Q Consensus 360 ~hgtgt~~~D~~E~~a~~~~~~~~~~~~~~~v~s~k~~~Gh~~~AsG~~~li~~~~~l~~~~ipp~~~~~~~~~~~~~~~ 439 (473)
+|+++|. .|..+++. |+... .+++++..+..+||++||+|+.++++++++|+++-
T Consensus 318 ~h~~ft~----~~l~~~~~-lg~~~--~~vn~~Gg~~a~GHp~gAsG~~~~~~~~~~L~~~~------------------ 372 (393)
T 1afw_A 318 INEAFAA----QALYCIHK-LGIDL--NKVNPRGGAIALGHPLGCTGARQVATILRELKKDQ------------------ 372 (393)
T ss_dssp ECCSBHH----HHHHHHHH-HTCCG--GGBSTTCCHHHHCBCTTTHHHHHHHHHHHHSCTTC------------------
T ss_pred EeccCHH----HHHHHHHH-hCCCC--cCcCCCCChhhcCCchhhHHHHHHHHHHHHHhhcC------------------
Confidence 9988885 36666644 45321 23444455558999999999999999999998631
Q ss_pred CccccCCCCCCcEEEEeccccccceeeEEEeec
Q 011989 440 MPLTASKDMPISAALSNSFGFGGTNASLLFTKC 472 (473)
Q Consensus 440 ~~~~~~~~~~~~~~l~~s~g~gG~~~~~vl~~~ 472 (473)
. .++...+-||...++||+++
T Consensus 373 --------~----gl~~~c~ggg~g~a~~~~~~ 393 (393)
T 1afw_A 373 --------I----GVVSMCIGTGMGAAAIFIKE 393 (393)
T ss_dssp --------E----EEEEEEETTTEEEEEEEEEC
T ss_pred --------C----cEEEEeecccceEEEEEEeC
Confidence 1 45555566788889999874
|
| >2ib8_A Acetyl-COA acetyltransferase; thiolase fold, potassium ION, chloride, beta-alpha-beta-ALPH alpha-beta-BETA topology; HET: MES; 1.85A {Homo sapiens} PDB: 2ib7_A* 2ib9_A* 2ibu_A* 2ibw_A* 2iby_A* 2f2s_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-32 Score=276.26 Aligned_cols=268 Identities=20% Similarity=0.271 Sum_probs=203.9
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCceeEEEecCCCChhhHHHHHHHHHHhccccCCCcchhhhhhhHHHHHHHHhcC
Q 011989 129 FIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYG 208 (473)
Q Consensus 129 ~~~la~~aa~~Al~dAgl~~~~~~~~~~~gvivg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lg 208 (473)
..+|+++++++||+|||+++++++ .+++|+..+.. ..+.++.+++..||
T Consensus 32 ~~~l~~~a~~~Al~dAgl~~~~id-----~~~~g~~~~~~--------------------------~~~~~a~~va~~lg 80 (395)
T 2ib8_A 32 ATKLGSIAIQGAIEKAGIPKEEVK-----EAYMGNVLQGG--------------------------EGQAPTRQAVLGAG 80 (395)
T ss_dssp HHHHHHHHHHHHHHHHTCCGGGCC-----EEEEECSCCTT--------------------------SCSCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCC-----EEEEEeccCCC--------------------------CCchHHHHHHHHcC
Confidence 467999999999999999887776 78888754321 11346778999999
Q ss_pred C--CCCeeeecCCcchHHHHHHHHHHHHHcCCCCEEEEeecCCCcChHH-------------------HHH---------
Q 011989 209 F--QGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALS-------------------MAG--------- 258 (473)
Q Consensus 209 l--~Gp~~~v~~acasg~~Al~~A~~~I~~G~~d~vlv~g~d~~~~~~~-------------------~~~--------- 258 (473)
+ ++|+++|+++|+|++.||.+|+++|++|++|++||+|+|.++.... +..
T Consensus 81 l~~~~p~~~v~~aCaS~~~Al~~A~~~I~~G~~d~vlvgG~e~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (395)
T 2ib8_A 81 LPISTPCTTINKVCASGMKAIMMASQSLMCGHQDVMVAGGMESMSNVPYVMNRGSTPYGGVKLEDLIVKDGLTDVYNKIH 160 (395)
T ss_dssp CCTTCCEEEEECGGGHHHHHHHHHHHHHHTTSCSEEEEEEEEEGGGCCEEECSSBCCTTCEEEEEHHHHHTTEETTTTEE
T ss_pred CCCCceEEEecccccHHHHHHHHHHHHHHCCCCCEEEEEeeecccCCcccccccccccccccccccccccccccccccch
Confidence 9 7999999999999999999999999999999999999997543211 000
Q ss_pred --------Hhhhhcccc--------------------ccCC-----------------CCCCCCcC--ccC---------
Q 011989 259 --------FCKSRALTT--------------------KYNG-----------------TPQEASRP--FDC--------- 282 (473)
Q Consensus 259 --------~~~~~~~~~--------------------~~~~-----------------~~~~~~~p--fd~--------- 282 (473)
....+.-.. .+.. ..++.+++ |+.
T Consensus 161 m~~~a~~~~~~~g~sre~~~~~A~~s~~~a~~a~~~~~f~~ei~p~~~~~~~~p~~~~~~D~~~r~~~~~~l~~l~~~f~ 240 (395)
T 2ib8_A 161 MGSCAENTAKKLNIARNEQDAYAINSYTRSKAAWEAGKFGNEVIPVTVTVKGQPDVVVKEDEEYKRVDFSKVPKLKTVFQ 240 (395)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHTTTTTTTBCCEEECCTTSCCEEECSCSGGGSCCTTTGGGSCCTTC
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcccccCcccceeeeeecccCCcceeeccccccccCCHHHHhcCCcccc
Confidence 011100000 0000 01122222 554
Q ss_pred CCCcee-------eccceEEEEEccchHHHhcCCeEEEEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCc
Q 011989 283 GRDGFV-------IGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQV 355 (473)
Q Consensus 283 ~~~G~~-------~geGaaavvL~~~~~A~~~g~~~~a~i~g~~~~~d~~~~~~~~~~~~~~~~a~~~al~~agl~~~dI 355 (473)
+++|++ ++||+++|||++++.|+++|.+++++|.|++.+. +.|...+.+...+++++|+++|++++||
T Consensus 241 ~~~g~vt~~~~~~~~dGAaavvL~s~~~A~~~g~~~~a~I~g~~~~~-----~~p~~~~~~~~~a~~~al~~Agl~~~dI 315 (395)
T 2ib8_A 241 KENGTVTAANASTLNDGAAALVLMTADAAKRLNVTPLARIVAFADAA-----VEPIDFPIAPVYAASMVLKDVGLKKEDI 315 (395)
T ss_dssp SSSCCCCTTTBCCCEEEEEEEEEEEHHHHHHTTCCCCEEEEEEEEEE-----CCGGGGGGHHHHHHHHHHHHHTCCGGGE
T ss_pred CCCCCcccccCCccccceeEEEEecHHHHHhcCCCccEEEEEEEEec-----cChhhccccHHHHHHHHHHHcCCCHHHc
Confidence 558999 9999999999999999999999999999999865 2444445677899999999999999999
Q ss_pred cEEEEcCCCCCCCCHHHHHHHHHH--hhcccCCCCceeeccccchhhhHHhHHHHHHHHHHHHHHhCccCCCCCCCCCCC
Q 011989 356 DYVNAHATSTPLGDTVEATAIRTV--FSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLAIHHGVAPLTLNLAKPDP 433 (473)
Q Consensus 356 d~v~~hgtgt~~~D~~E~~a~~~~--~~~~~~~~~~~v~s~k~~~Gh~~~AsG~~~li~~~~~l~~~~ipp~~~~~~~~~ 433 (473)
||||+| |..|..++..+ |+... .++++++.|.++||+.||+|+.++++++++|+++
T Consensus 316 d~ie~~-------D~f~~~~l~~~e~lg~~~--~~vn~~gg~~~~GHp~gAsG~~~~~~~~~~L~~~------------- 373 (395)
T 2ib8_A 316 AMWEVN-------EAFSLVVLANIKMLEIDP--QKVNINGGAVSLGHPIGMSGARIVGHLTHALKQG------------- 373 (395)
T ss_dssp EEEEEC-------CSBHHHHHHHHHHHTCCG--GGBSTTCCHHHHCCCHHHHHHHHHHHHHHHSCTT-------------
T ss_pred CEEEEc-------cccHHHHHHHHHHcCCCc--cccCCCcchhhcCCChhHHHHHHHHHHHHHHhhC-------------
Confidence 999987 66688877777 66432 3678888899999999999999999999999741
Q ss_pred CCCCCCCccccCCCCCCcEEEEeccccccceeeEEEee
Q 011989 434 IFNDNFMPLTASKDMPISAALSNSFGFGGTNASLLFTK 471 (473)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~l~~s~g~gG~~~~~vl~~ 471 (473)
++.++....-||...++||++
T Consensus 374 -----------------~~gl~~~~~ggG~g~a~~~~~ 394 (395)
T 2ib8_A 374 -----------------EYGLASICNGGGGASAMLIQK 394 (395)
T ss_dssp -----------------CEEEEEEEETTTEEEEEEEEE
T ss_pred -----------------CceEEEEecccCHhheEEEEc
Confidence 234554555567778888886
|
| >4dd5_A Acetyl-COA acetyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, thiolase; 1.25A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-32 Score=272.39 Aligned_cols=272 Identities=22% Similarity=0.363 Sum_probs=213.2
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCceeEEEecCCCChhhHHHHHHHHHHhccccCCCcchhhhhhhHHHHHHHHhcC
Q 011989 129 FIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYG 208 (473)
Q Consensus 129 ~~~la~~aa~~Al~dAgl~~~~~~~~~~~gvivg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lg 208 (473)
..+|+++|+++||+|||+++++++ +|++|+..+.. .....+.+++..+|
T Consensus 31 ~~~L~~~A~~~AL~~agl~~~dId-----~vi~g~~~~~~--------------------------~~~~~a~~v~~~lG 79 (396)
T 4dd5_A 31 AVELGVTAAKEAIKRANITPDMID-----ESLLGGVLTAG--------------------------LGQNIARQIALGAG 79 (396)
T ss_dssp HHHHHHHHHHHHHHHTTCCGGGCC-----EEEEECSCCTT--------------------------SCSCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCC-----EEEEEeecCCC--------------------------CCchHHHHHHHHcC
Confidence 468999999999999999999888 89999854321 12345778999999
Q ss_pred C--CCCeeeecCCcchHHHHHHHHHHHHHcCCCCEEEEeecCCCcChHHHH-----------------------------
Q 011989 209 F--QGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMA----------------------------- 257 (473)
Q Consensus 209 l--~Gp~~~v~~acasg~~Al~~A~~~I~~G~~d~vlv~g~d~~~~~~~~~----------------------------- 257 (473)
+ ++|+++|+++|+|++.||.+|+++|++|++|+|||+|+|.++......
T Consensus 80 l~~~~p~~~v~~aCss~~~al~~A~~~I~~G~~~~vLv~g~e~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (396)
T 4dd5_A 80 IPVEKPAMTINIVCGSGLRSVSMASQLIALGDADIMLVGGAENMSMSPYLVPSARYGARMGDAAFVDSMIKDGLSDIFNN 159 (396)
T ss_dssp CCTTSCEEEECCGGGHHHHHHHHHHHHHHHTSCSEEEEEEEEESTTCCEECTTTTTCCCSSCCCCEEHHHHHTSEETTTT
T ss_pred CCCCceEEEeccccHHHHHHHHHHHHHHhcCCCCEEEEEEEecccCCcccccccccccccCcccccchhhhccccccccc
Confidence 9 479999999999999999999999999999999999999876521100
Q ss_pred ----------------------HH---hhhhccc---c-ccC----------------CCCCCCCcC-------------
Q 011989 258 ----------------------GF---CKSRALT---T-KYN----------------GTPQEASRP------------- 279 (473)
Q Consensus 258 ----------------------~~---~~~~~~~---~-~~~----------------~~~~~~~~p------------- 279 (473)
.+ +..+... . .+. ..++..+|+
T Consensus 160 ~~~~~~a~~~~~~~g~tre~~~~~a~~s~~~a~~a~~~g~f~~ei~pv~~~~~~~~~~~~~d~~~r~~~t~e~l~~~~~v 239 (396)
T 4dd5_A 160 YHMGITAENIAEQWNITREEQDELALASQNKAEKAQAEGKFDEEIVPVVIKGRKGDTVVDKDEYIKPGTTMEKLAKLRPA 239 (396)
T ss_dssp EEHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHTTTTTTTBCCEEEC----CEEECSCSCCCTTCCHHHHHHCCBS
T ss_pred chHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhHHcCCcccceeeeeeccCCCceeecCcccccCCCCHHHHhhCCCc
Confidence 00 0000000 0 000 012222222
Q ss_pred ccC-----CCCceeeccceEEEEEccchHHHhcCCeEEEEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCC
Q 011989 280 FDC-----GRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQ 354 (473)
Q Consensus 280 fd~-----~~~G~~~geGaaavvL~~~~~A~~~g~~~~a~i~g~~~~~d~~~~~~~~~~~~~~~~a~~~al~~agl~~~d 354 (473)
|+. ..+...++||++++||++++.|++++.+++++|.|++.+++ .|++.+.++..+++++|+++|++++|
T Consensus 240 ~~p~g~~t~~~~~~~~dGaaavvL~s~~~A~~~g~~~~a~I~g~~~~~~-----~p~~~~~~~~~a~~~al~~Agl~~~d 314 (396)
T 4dd5_A 240 FKKDGTVTAGNASGINDGAAMLVVMAKEKAEELGIEPLATIVSYGTAGV-----DPKIMGYGPVPATKKALEAANMTIED 314 (396)
T ss_dssp SSTTCSCBTTTBCCCEEEEEEEEEEEHHHHHHHTCCCSEEEEEEEEEEC-----CGGGGGGTHHHHHHHHHHHHTCCGGG
T ss_pred cCCCCCeecCCCCCcCcceeEEEEeeHHHHHHCCCCceEEEEEEEEecC-----CCCcccHHHHHHHHHHHHHcCCCHHH
Confidence 331 24566789999999999999999999999999999998874 45555566789999999999999999
Q ss_pred ccEEEEcCCCCCCCCHHHHHHHHHHhhcccCCCCceeeccccchhhhHHhHHHHHHHHHHHHHHhCccCCCCCCCCCCCC
Q 011989 355 VDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLAIHHGVAPLTLNLAKPDPI 434 (473)
Q Consensus 355 Id~v~~hgtgt~~~D~~E~~a~~~~~~~~~~~~~~~v~s~k~~~Gh~~~AsG~~~li~~~~~l~~~~ipp~~~~~~~~~~ 434 (473)
|||||+|.+. .+|..++.+.|+... .++++++.|.++||+++|+|+.++++++++|+++
T Consensus 315 Id~ve~~d~f-----~~~~~~~~~~lg~~~--~~~n~~gg~~~~GH~~gasG~~~~~~~~~~L~~~-------------- 373 (396)
T 4dd5_A 315 IDLVEANEAF-----AAQSVAVIRDLNIDM--NKVNVNGGAIAIGHPIGCSGARILTTLLYEMKRR-------------- 373 (396)
T ss_dssp CSEEEECCSB-----HHHHHHHHHHHTCCT--TSBSTTCCHHHHCCCHHHHHHHHHHHHHHHHHHH--------------
T ss_pred cCEEEecChH-----HHHHHHHHHHhCCCC--CccCCCCchhhccCcHHHHHHHHHHHHHHHHHhc--------------
Confidence 9999999543 357778888887543 4688999999999999999999999999999973
Q ss_pred CCCCCCccccCCCCCCcEEEEeccccccceeeEEEee
Q 011989 435 FNDNFMPLTASKDMPISAALSNSFGFGGTNASLLFTK 471 (473)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~l~~s~g~gG~~~~~vl~~ 471 (473)
+.+++|++..+.||...++|||+
T Consensus 374 --------------~~~~gl~~~c~ggG~g~a~~~e~ 396 (396)
T 4dd5_A 374 --------------DAKTGLATLCIGGGMGTTLIVKR 396 (396)
T ss_dssp --------------TCSEEEEEEEETTTEEEEEEEEC
T ss_pred --------------CCCeEEEEEcccCCceeEEEEeC
Confidence 25789999999999999999985
|
| >3ss6_A Acetyl-COA acetyltransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha beta; HET: CSO; 1.70A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=99.98 E-value=9.5e-32 Score=271.07 Aligned_cols=273 Identities=21% Similarity=0.294 Sum_probs=213.5
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCceeEEEecCCCChhhHHHHHHHHHHhccccCCCcchhhhhhhHHHHHHHHhcC
Q 011989 129 FIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYG 208 (473)
Q Consensus 129 ~~~la~~aa~~Al~dAgl~~~~~~~~~~~gvivg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lg 208 (473)
..+|+++|+++||+|||+++++++ +|++|+..... .....+.+++..+|
T Consensus 29 ~~~L~~~A~~~Al~~agl~~~~Id-----~v~~g~~~~~~--------------------------~~~~~a~~i~~~lG 77 (394)
T 3ss6_A 29 PVELAVPVLQEAVKRGGVEPHEVD-----EVILGHCIQRT--------------------------DEANTARTAALAAG 77 (394)
T ss_dssp HHHHHHHHHHHHHHHTTCCGGGCC-----EEEEECSSCCG--------------------------GGCSHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHcCCCHhHCC-----EEEEEEccCCC--------------------------ccchHHHHHHHHcC
Confidence 467999999999999999999888 89999854321 12345678999999
Q ss_pred C--CCCeeeecCCcchHHHHHHHHHHHHHcCCCCEEEEeecCCCcChHHH------------------------------
Q 011989 209 F--QGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSM------------------------------ 256 (473)
Q Consensus 209 l--~Gp~~~v~~acasg~~Al~~A~~~I~~G~~d~vlv~g~d~~~~~~~~------------------------------ 256 (473)
+ ++|+++|+++|+|++.||.+|+++|++|++|++||+|+|.++.....
T Consensus 78 l~~~~p~~~v~~aCss~~~al~~A~~~I~~G~~~~vlv~G~e~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (394)
T 3ss6_A 78 FPDTVTGYTIQRQCSSGMQAIMSAAMQIQLGVSEVVVAGGVEAMSSSPYALKQHRWGQRLQHGEIRDTVWEVLEDPIHHI 157 (394)
T ss_dssp CCTTCEEEEEECGGGHHHHHHHHHHHHHHHTSCSEEEEEEEEECTTCCEEESSTTTCCCSSCCCCEEHHHHHTBCTTTCC
T ss_pred CCCCceEEEecCcchHHHHHHHHHHHHHhCCCCCEEEEEEEhhccCCcccccccccccccCCcccccccccccccccccc
Confidence 9 47999999999999999999999999999999999999986642210
Q ss_pred -HH----------------------Hhhhh--------ccccc------------cCCCCCCCCcC-------------c
Q 011989 257 -AG----------------------FCKSR--------ALTTK------------YNGTPQEASRP-------------F 280 (473)
Q Consensus 257 -~~----------------------~~~~~--------~~~~~------------~~~~~~~~~~p-------------f 280 (473)
.. .+..+ .+.+. ....++..+|+ |
T Consensus 158 ~~g~~a~~~~~~~g~tre~~~~~a~~s~~~A~~a~~ag~f~~ei~p~~~~~~~~~~~~~~d~~~R~~~t~e~~~~~~pvf 237 (394)
T 3ss6_A 158 MMGETAENLVEQYEITREEQDEVALRSHTLALKAIESGYFDDQIVPITIKERRKEVVFSKDEHPRADITAEKLAGLKPAF 237 (394)
T ss_dssp BHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHTTTTTTBCCEEEECSSCEEEECSCCCCCTTCCHHHHHTCCBSS
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhHhcCCccceeEeEEeccCCCceeecccccccCCCCHHHHhhCCCcc
Confidence 00 00000 00000 00123344443 5
Q ss_pred cC-----CCCceeeccceEEEEEccchHHHhcCCeEEEEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCc
Q 011989 281 DC-----GRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQV 355 (473)
Q Consensus 281 d~-----~~~G~~~geGaaavvL~~~~~A~~~g~~~~a~i~g~~~~~d~~~~~~~~~~~~~~~~a~~~al~~agl~~~dI 355 (473)
+. ..++..++||++++||++++.|++++.+++++|.|++.++. .|.....+...+++++|+++|++++||
T Consensus 238 ~~~g~~t~~~~~~~~dGaaavvL~~~~~A~~~g~~~~a~I~g~~~~~~-----~p~~~~~~~~~a~~~al~~agl~~~dI 312 (394)
T 3ss6_A 238 RKDGSVTAGNASGLNDGSAVLVLMSEEKAKEKGLQPLARIVGYSVAGV-----DPKIMGIGPAPAIRKGLEKVDWSLEDA 312 (394)
T ss_dssp STTCCCBSTTBCCCEEEEEEEEEEEHHHHHHHTCCCSEEEEEEEEEEC-----CGGGGGGTHHHHHHHHHHHHTCCGGGC
T ss_pred CCCCceecCccCCcccceeEEEeccHHHHHHCCCCceEEEEEEEEecC-----CCccchHHHHHHHHHHHHHcCCCHHHc
Confidence 42 25667789999999999999999999999999999999763 455555567899999999999999999
Q ss_pred cEEEEcCCCCCCCCHHHHHHHHHHhhcccCCCCceeeccccchhhhHHhHHHHHHHHHHHHHHhCccCCCCCCCCCCCCC
Q 011989 356 DYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLAIHHGVAPLTLNLAKPDPIF 435 (473)
Q Consensus 356 d~v~~hgtgt~~~D~~E~~a~~~~~~~~~~~~~~~v~s~k~~~Gh~~~AsG~~~li~~~~~l~~~~ipp~~~~~~~~~~~ 435 (473)
||||+|.. ..+|..++.+.|+... .++++++.|.++||+.+|+|+..+++++++|+++
T Consensus 313 d~ve~~d~-----fa~~~~~~~~~lg~~~--~~v~~~gg~~~~GH~~gasG~~~~~~~~~~L~~~--------------- 370 (394)
T 3ss6_A 313 DLLEINEA-----FAAQYLAVEKELDLDR--EKVNVNGSGVGLGHPIGCTGARITVSLIHELKRR--------------- 370 (394)
T ss_dssp SEEEECCS-----BHHHHHHHHHHHTCCG--GGBSTTCCHHHHCCCHHHHHHHHHHHHHHHHHHH---------------
T ss_pred CEEEeCCc-----hHHHHHHHHHHhCCCC--CCCCCCcchHhhCCcHHHHHHHHHHHHHHHHHhc---------------
Confidence 99999943 2368888888887543 3678888999999999999999999999999872
Q ss_pred CCCCCccccCCCCCCcEEEEeccccccceeeEEEeec
Q 011989 436 NDNFMPLTASKDMPISAALSNSFGFGGTNASLLFTKC 472 (473)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~l~~s~g~gG~~~~~vl~~~ 472 (473)
+.++.|++..+.||...++||++.
T Consensus 371 -------------~~~~gl~~~c~ggG~g~a~~~e~~ 394 (394)
T 3ss6_A 371 -------------GLEKGIASLCVGGGIGVALFIEAL 394 (394)
T ss_dssp -------------TCCEEEEEEEETTTEEEEEEEEEC
T ss_pred -------------CCCEEEEEEccCcCceeEEEEEcC
Confidence 246888888889999999999874
|
| >3goa_A 3-ketoacyl-COA thiolase; metabolism, fatty acid, phospholipid, IDP01071, acyltransferase, cytoplasm, fatty acid metabolism; 1.70A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.5e-31 Score=268.74 Aligned_cols=277 Identities=20% Similarity=0.240 Sum_probs=204.5
Q ss_pred HHHHHHHHHHHHHHHHc-CCCCCCCCCCCceeEEEecCCCChhhHHHHHHHHHHhccccCCCcchhhhhhhHHHHHHHHh
Q 011989 128 RFIAYALCAADEALHDA-KWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMK 206 (473)
Q Consensus 128 ~~~~la~~aa~~Al~dA-gl~~~~~~~~~~~gvivg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~ 206 (473)
+..+|+++|+++||+|| |+++++++ +|++|+..+... ....++.+++..
T Consensus 26 ~~~~L~~~a~~~Al~~a~gi~~~~Id-----~v~~g~~~~~~~-------------------------~~~~~a~~~~~~ 75 (387)
T 3goa_A 26 RAEDLSAHLMRSLLARNPSLTAATLD-----DIYWGCVQQTLE-------------------------QGFNIARNAALL 75 (387)
T ss_dssp CHHHHHHHHHHHHHHHCTTSCGGGCC-----EEEEECSCCSBT-------------------------TTTTHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhccCCCHHHcC-----EEEEEcccCCcc-------------------------cccHHHHHHHHH
Confidence 45789999999999999 99999888 899998543210 013456789999
Q ss_pred cCC--CCCeeeecCCcchHHHHHHHHHHHHHcCCCCEEEEeecCCCcChHHH----------------------------
Q 011989 207 YGF--QGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSM---------------------------- 256 (473)
Q Consensus 207 lgl--~Gp~~~v~~acasg~~Al~~A~~~I~~G~~d~vlv~g~d~~~~~~~~---------------------------- 256 (473)
+|+ +.|+++|+++|+|++.||.+|+++|++|++|++||+|+|.++.....
T Consensus 76 ~Gl~~~~p~~~v~~aCss~l~Al~~A~~~I~sG~~d~vLv~G~e~~s~~~~~~~~~~~~~~~~~~~~~~~~~g~~a~~~~ 155 (387)
T 3goa_A 76 AEIPHSVPAVTVNRLCGSSMQALHDAARMIMTGDAQVCLVGGVEHMGHVPMSHGVDFHPGLSRNVAKAAGMMGLTAEMLS 155 (387)
T ss_dssp TTCCTTSCCEEEECGGGHHHHHHHHHHHHHHTTSCSEEEEEEEECTTTSCTTTTBCCCTTCC-------CCCHHHHHHHH
T ss_pred cCCCCCCcEeEecCcchHHHHHHHHHHHHHhCCCCCEEEEEEEecCCCCccccccCcCcccccccccccccHHHHHHHHH
Confidence 999 57999999999999999999999999999999999999987643210
Q ss_pred ----------HHHh---hhh--------cccccc-------------CCCCCCCCcC-------------ccC------C
Q 011989 257 ----------AGFC---KSR--------ALTTKY-------------NGTPQEASRP-------------FDC------G 283 (473)
Q Consensus 257 ----------~~~~---~~~--------~~~~~~-------------~~~~~~~~~p-------------fd~------~ 283 (473)
..+. ..+ .+.... ...+++.+|| |+. .
T Consensus 156 ~~~g~tre~~~~~a~~s~~~A~~a~~~g~f~~ei~p~~~~~~~~~~~~~~~d~~~r~~~t~e~l~~~~p~f~~~~g~~t~ 235 (387)
T 3goa_A 156 RLHGISREMQDQFAARSHARAWAATQSGAFKTEIIPTGGHDADGVLKQFNYDEVIRPETTVEALSTLRPAFDPVSGTVTA 235 (387)
T ss_dssp HHTTCCHHHHHHHHHHHHHHHHHHHHHTTTTTTBCCEEEECTTSCEEEECSCTTCCTTCCHHHHTTSCCSSCTTTCCCCG
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhHhcCCcccceeeeeeccccCcccccccccccCCCCCHHHHhcCCCcccCCCCceec
Confidence 0000 000 000000 0012233332 543 2
Q ss_pred CCceeeccceEEEEEccchHHHhcCCeEEEEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEEEEcCC
Q 011989 284 RDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYVNAHAT 363 (473)
Q Consensus 284 ~~G~~~geGaaavvL~~~~~A~~~g~~~~a~i~g~~~~~d~~~~~~~~~~~~~~~~a~~~al~~agl~~~dId~v~~hgt 363 (473)
.++..++||++++||++++.|+++|.+++++|.|++.+.++ |+....+...+++++|+++|++|+||||||+|.+
T Consensus 236 ~~~~~~~dGaaavvL~s~~~A~~~g~~~~a~i~g~~~~~~~-----~~~~~~~~~~a~~~al~~agl~~~did~ve~h~~ 310 (387)
T 3goa_A 236 GTSSALSDGAAAMLVMSESRARELGLKPRARIRSMAVVGCD-----PSIMGYGPVPASKLALKKAGLSASDIDVFEMNEA 310 (387)
T ss_dssp GGBCCCEEEEEEEEEEEHHHHHHTTCCCCEEEEEEEEEECC-----TTSTTCTHHHHHHHHHHHHTCCGGGCSEEEECCS
T ss_pred ccCCCcCccEEEEEEecHHHHHHcCCCccEEEEEEEEcCCC-----CCcchHHHHHHHHHHHHHcCCCHHHcCEEEEeCc
Confidence 45667899999999999999999999999999999998874 3333345689999999999999999999999976
Q ss_pred CCCCCCHHHHHHHHHHhhccc-CCCCceeeccccchhhhHHhHHHHHHHHHHHHHHhCccCCCCCCCCCCCCCCCCCCcc
Q 011989 364 STPLGDTVEATAIRTVFSDHA-TSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLAIHHGVAPLTLNLAKPDPIFNDNFMPL 442 (473)
Q Consensus 364 gt~~~D~~E~~a~~~~~~~~~-~~~~~~v~s~k~~~Gh~~~AsG~~~li~~~~~l~~~~ipp~~~~~~~~~~~~~~~~~~ 442 (473)
.+.. +...+ +.++.-. ...+++++..+..+||++||+|+.++++++++|+++
T Consensus 311 f~~~----~~~~~-~~lg~~~~~~~~vn~~gg~~~~GH~~gasG~~~~~~~~~~L~~~---------------------- 363 (387)
T 3goa_A 311 FAAQ----ILPCI-KDLGLMEQIDEKINLNGGAIALGHPLGCSGARISTTLINLMERK---------------------- 363 (387)
T ss_dssp BHHH----HHHHH-HHTTCGGGHHHHBSTTCCHHHHCCCHHHHHHHHHHHHHHHHHHT----------------------
T ss_pred chHH----HHHHH-HHhCCCcCCCccCCCCCchhcccCCHHHHHHHHHHHHHHHHHhc----------------------
Confidence 6542 33333 3333200 001344555566899999999999999999999962
Q ss_pred ccCCCCCCcEEEEeccccccceeeEEEeec
Q 011989 443 TASKDMPISAALSNSFGFGGTNASLLFTKC 472 (473)
Q Consensus 443 ~~~~~~~~~~~l~~s~g~gG~~~~~vl~~~ 472 (473)
+.++.+++..+-||...++||++.
T Consensus 364 ------~~~~gl~~~c~ggG~g~a~~~e~~ 387 (387)
T 3goa_A 364 ------DAQFGLATMCIGLGQGIATVFERV 387 (387)
T ss_dssp ------TCSEEEEEEEETTTEEEEEEEECC
T ss_pred ------CCCEEEEEeccCcCceEEEEEEeC
Confidence 246888877788899999999863
|
| >4e1l_A Acetoacetyl-COA thiolase 2; 3-layer(ABA) sandwich, transferase; 2.00A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=99.97 E-value=6.2e-31 Score=265.35 Aligned_cols=272 Identities=24% Similarity=0.375 Sum_probs=211.0
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCceeEEEecCCCChhhHHHHHHHHHHhccccCCCcchhhhhhhHHHHHHHHhcC
Q 011989 129 FIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYG 208 (473)
Q Consensus 129 ~~~la~~aa~~Al~dAgl~~~~~~~~~~~gvivg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lg 208 (473)
..+|+++|+++||+|||+++++++ +|++|+..... ....++.+++..+|
T Consensus 29 ~~~L~~~a~~~Al~~agi~~~~Id-----~v~~g~~~~~~--------------------------~~~~~a~~~~~~lG 77 (395)
T 4e1l_A 29 AVQLGTIAVKEAISRVGLNLSEID-----EVIIGNVLQTG--------------------------LGQNVARQIAINAG 77 (395)
T ss_dssp HHHHHHHHHHHHHHHTTCCGGGCC-----EEEEECCCCSS--------------------------TTCCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCC-----EEEEEeccCCC--------------------------CcchHHHHHHHHcC
Confidence 467999999999999999999888 89999754221 11245678999999
Q ss_pred C--CCCeeeecCCcchHHHHHHHHHHHHHcCCCCEEEEeecCCCcChHHHH-----------------------------
Q 011989 209 F--QGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMA----------------------------- 257 (473)
Q Consensus 209 l--~Gp~~~v~~acasg~~Al~~A~~~I~~G~~d~vlv~g~d~~~~~~~~~----------------------------- 257 (473)
+ ++|+++|+++|+|++.||.+|+++|++|++|++||+|+|.++......
T Consensus 78 l~~~~p~~~v~~~Css~~~al~~A~~~I~~G~~~~vlv~g~e~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (395)
T 4e1l_A 78 IPNSVPSYTVNKLCGSGLKSVQLAAQSITSGENDVVIAGGTENMSQAPYIVPTARFGSKMGNITMVDSMLTDGLIDAFNQ 157 (395)
T ss_dssp CCTTSCEEEECCGGGHHHHHHHHHHHHHHTTSCSEEEEEEEEETTTHHHHSBHHHHEEESCCC------CCTTEEEETTH
T ss_pred CCCCceEEEccccchHHHHHHHHHHHHHhCCCCCEEEEEEEecccCCcccccccccccccCccccchhhccccccccccc
Confidence 9 579999999999999999999999999999999999999877633210
Q ss_pred ---HHh----------------------hhhccc---c-cc-----------------CCCCCCCCcC------------
Q 011989 258 ---GFC----------------------KSRALT---T-KY-----------------NGTPQEASRP------------ 279 (473)
Q Consensus 258 ---~~~----------------------~~~~~~---~-~~-----------------~~~~~~~~~p------------ 279 (473)
... ..+... . .+ ...++..+|+
T Consensus 158 ~~~g~~a~~~~~~~g~tre~~~~~a~~s~~~a~~a~~~g~~~~ei~pv~~~~~~g~~~~~~~d~~~r~~~t~e~l~~~~~ 237 (395)
T 4e1l_A 158 YHMGITAENIATKFEFTREMQDKLALESQNKAENAIKNNRFKEEIVPVDVLIRRGKIETIDKDEYPKLGMTFEGLSKLKP 237 (395)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHTTTTTTTBCCEEEEEETTEEEEECSCSCCCTTCCHHHHHHCCB
T ss_pred chHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHcCCcccceeeeEeccCCCcceEECCccccCCCCCHHHHhhCCC
Confidence 000 000000 0 00 0012233332
Q ss_pred -ccC-----CCCceeeccceEEEEEccchHHHhcCCeEEEEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHHcCCCCC
Q 011989 280 -FDC-----GRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSH 353 (473)
Q Consensus 280 -fd~-----~~~G~~~geGaaavvL~~~~~A~~~g~~~~a~i~g~~~~~d~~~~~~~~~~~~~~~~a~~~al~~agl~~~ 353 (473)
|+. ..+...++||++++||++++.|++++.+++++|.|++.+++ .|+..+.++..+++++|+++|++++
T Consensus 238 v~~~~g~~t~~~~~~~~dGaaavvL~s~~~A~~~g~~~~a~i~g~~~~~~-----~p~~~~~~~~~ai~~al~~agl~~~ 312 (395)
T 4e1l_A 238 AFKKDGTVTAGNASGINDGAAMLILMSQQKADELGIRPLAKIKSYASAGV-----EPEVMGTGPIPATRKALKKAGLSIN 312 (395)
T ss_dssp SSSTTCSCBTTSBCCCEEEEEEEEEEEHHHHHHHTCCCSEEEEEEEEEEC-----CGGGTTCTHHHHHHHHHHHTTCCGG
T ss_pred ccCCCCCeeCCcCCCccceEEEEEEecHHHHHHCCCCeEEEEEEEEEccC-----CCCcchHHHHHHHHHHHHHcCCCHH
Confidence 331 24566789999999999999999999999999999999874 3444444568999999999999999
Q ss_pred CccEEEEcCCCCCCCCHHHHHHHHHHhhcccCCCCceeeccccchhhhHHhHHHHHHHHHHHHHHhCccCCCCCCCCCCC
Q 011989 354 QVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLAIHHGVAPLTLNLAKPDP 433 (473)
Q Consensus 354 dId~v~~hgtgt~~~D~~E~~a~~~~~~~~~~~~~~~v~s~k~~~Gh~~~AsG~~~li~~~~~l~~~~ipp~~~~~~~~~ 433 (473)
||||||+|.. ...|..++.+.|+... .++++++.|.++||+.||+|+..+++++++|+++
T Consensus 313 dId~ve~~d~-----fa~~~~~~~~~lg~~~--~~v~~~gg~~~~Gh~~gasG~~~~~~~~~~L~~~------------- 372 (395)
T 4e1l_A 313 DIDLIEANEA-----FAAQALAVKNELQIDS--SKLNVNGGAIALGHPIGASGARILVTLIYEMQKR------------- 372 (395)
T ss_dssp GCSEEEECCS-----BHHHHHHHHHHHTCCG--GGBSTTCCHHHHCCCTTTHHHHHHHHHHHHHHHH-------------
T ss_pred HcCEEEecCh-----hHHHHHHHHHHhCCCC--CCCCcCCchhhcCCcHHHHHHHHHHHHHHHHHhc-------------
Confidence 9999999833 2267778888887543 3678899999999999999999999999999973
Q ss_pred CCCCCCCccccCCCCCCcEEEEeccccccceeeEEEee
Q 011989 434 IFNDNFMPLTASKDMPISAALSNSFGFGGTNASLLFTK 471 (473)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~l~~s~g~gG~~~~~vl~~ 471 (473)
..++.+++..+.||...++||++
T Consensus 373 ---------------~~~~gl~~~c~ggG~g~a~~~e~ 395 (395)
T 4e1l_A 373 ---------------KVETGLATLCIGGGQGISMVVSR 395 (395)
T ss_dssp ---------------TCSEEEEEEESSTTEEEEEEEEC
T ss_pred ---------------CCCEEEEEEccCCCceEEEEEeC
Confidence 24688888889999999999985
|
| >1ub7_A 3-oxoacyl-[acyl-carrier protein] synthase; fatty acid synthesis, beta-ketoacyl-ACP synthase III, FABH; 2.30A {Thermus thermophilus} SCOP: c.95.1.2 c.95.1.2 | Back alignment and structure |
|---|
Probab=99.97 E-value=6.1e-32 Score=265.81 Aligned_cols=249 Identities=17% Similarity=0.167 Sum_probs=186.3
Q ss_pred CHHHHHHHHHHHHHHHHcCCCCCCCCCCCceeEEEecCCCChhhHHHHHHHHHHhccccCCCcchhhhhhhHHHHHHHHh
Q 011989 127 ARFIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMK 206 (473)
Q Consensus 127 ~~~~~la~~aa~~Al~dAgl~~~~~~~~~~~gvivg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~ 206 (473)
++..+|+++|+++||+|||+++++++ +|+++++... ...+..+.+++..
T Consensus 48 ~~~~~la~~a~~~al~~ag~~~~~id-----~vi~~~~~~~--------------------------~~~~~~a~~v~~~ 96 (322)
T 1ub7_A 48 EYTSDLAFKAVEDLLRRHPGALEGVD-----AVIVATNTPD--------------------------ALFPDTAALVQAR 96 (322)
T ss_dssp CCHHHHHHHHHHHHHHHSTTTTTTEE-----EEEEECSSCS--------------------------EEESCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCCHHHCC-----EEEEEcCCCC--------------------------CCCCcHHHHHHHH
Confidence 45789999999999999999877665 7888875421 1112357899999
Q ss_pred cCCCCCeeeecCCcchHHHHHHHHHHHHHcCCCCEEEEeecCCCcChHHHHHHhhhhccccccCCCCCCCCcCccCCCCc
Q 011989 207 YGFQGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDG 286 (473)
Q Consensus 207 lgl~Gp~~~v~~acasg~~Al~~A~~~I~~G~~d~vlv~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pfd~~~~G 286 (473)
||+++|+++++++|+|++.||..|+++|++|++|++||+|+|.+. +. ..|+| ++++
T Consensus 97 lgl~~~~~~v~~aCas~~~al~~A~~~i~~g~~~~vlv~g~e~~s-~~----------------------~~~~d-~~~~ 152 (322)
T 1ub7_A 97 FGLKAFAYDLLAGCPGWIYALAQAHALVEAGLAQKVLAVGAEALS-KI----------------------IDWND-RATA 152 (322)
T ss_dssp TTCCCEEEEEECSTTHHHHHHHHHHHHHHTTSCSEEEEEEEECGG-GT----------------------SCTTC-HHHH
T ss_pred hCCCCEEEeeCccchHHHHHHHHHHHHHHcCCCCEEEEEEechhc-cc----------------------cChhh-cccc
Confidence 999999999999999999999999999999999999999999742 21 01343 4568
Q ss_pred eeeccceEEEEEccchHHHhcCCeEEEEE-EEEEEecCCCCCCC-----CCC---------Ch--------HHHHHHHHH
Q 011989 287 FVIGEGSGVLVLEELEHAKKRGAKIYAEV-RGYGMSGDAHHITQ-----PHI---------DG--------KGAILAMTR 343 (473)
Q Consensus 287 ~~~geGaaavvL~~~~~A~~~g~~~~a~i-~g~~~~~d~~~~~~-----~~~---------~~--------~~~~~a~~~ 343 (473)
+++||||+|+||++.+. +..+++.+ .+.+...+..+.+. |+. .+ ..+.+++++
T Consensus 153 ~~~GdGA~A~vL~~~~~----~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~ 228 (322)
T 1ub7_A 153 VLFGDGGGAAVVGKVRE----GYGFRSFVLGADGTGAKELYHACVAPRLPDGTSMKNRLYMNGREVFKFAVRVMNTATLE 228 (322)
T ss_dssp TTBCCEEEEEEEECCCT----TCEEEEEEEEECGGGCTTEEEESSCSBCTTSCBCCSSCEECHHHHHHHHHHHHHHHHHH
T ss_pred eeeccccEEEEEEecCC----CCceeEEEEEEecCCCCeEEeCCCCCCCCccccccceEEecCHHHHHHHHHHHHHHHHH
Confidence 99999999999998653 23455443 22221112111110 221 22 467889999
Q ss_pred HHHHcCCCCCCccEEEEcCCCCCCCCHHHHHHHHHHhhcccCCCCceeeccccchhhhHHhHHHHHHHHHHHHHHhCccC
Q 011989 344 ALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLAIHHGVAP 423 (473)
Q Consensus 344 al~~agl~~~dId~v~~hgtgt~~~D~~E~~a~~~~~~~~~~~~~~~v~s~k~~~Gh~~~AsG~~~li~~~~~l~~~~ip 423 (473)
+|+++|++++|||||++|+++++..|. +.+.|+... . .+.+.|..+||+.+|++++.+.++ ++++.+.
T Consensus 229 al~~agl~~~did~~~~H~~~~~~~d~-----~~~~lg~~~--~--~~~~~~~~~Gh~~~As~~~~l~~~---l~~g~~~ 296 (322)
T 1ub7_A 229 AIEKAGLTPEDIRLFVPHQANLRIIDA-----ARERLGLPW--E--RVAVNVDRYGNTSTASIPLALKEA---VDAGRIR 296 (322)
T ss_dssp HHHHHTCCGGGCSEEEECCSCHHHHHH-----HHHTTTCCG--G--GBCCCHHHHCBCGGGHHHHHHHHH---HHHTSSC
T ss_pred HHHHcCCCHHHCCEEEEcCCCHHHHHH-----HHHHcCCCH--H--HHHHHHHhhCcHHHHHHHHHHHHH---HHhCCCC
Confidence 999999999999999999999987663 566666432 1 234678999999999999977654 4555431
Q ss_pred CCCCCCCCCCCCCCCCCccccCCCCCCcEEEEeccccccceeeEEEee
Q 011989 424 LTLNLAKPDPIFNDNFMPLTASKDMPISAALSNSFGFGGTNASLLFTK 471 (473)
Q Consensus 424 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~g~gG~~~~~vl~~ 471 (473)
+.+.+++++||+|++++++||+.
T Consensus 297 -------------------------~g~~~l~~~~G~G~~~~~~vl~~ 319 (322)
T 1ub7_A 297 -------------------------EGDHVLLVSFGAGLTWAAAVLTW 319 (322)
T ss_dssp -------------------------TTCEEEEEEEETTTEEEEEEEEC
T ss_pred -------------------------CCCEEEEEEEChhheeEEEEEEe
Confidence 24689999999999999999975
|
| >3svk_A Acetyl-COA acetyltransferase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.20A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.7e-30 Score=260.80 Aligned_cols=274 Identities=19% Similarity=0.198 Sum_probs=194.6
Q ss_pred HHHHHHHHHHHHHHH-cCCCCCCCCCCCceeEEEecCCCChhhHHHHHHHHHHhccccCCCcchhhhhhhHHHHHHHHhc
Q 011989 129 FIAYALCAADEALHD-AKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKY 207 (473)
Q Consensus 129 ~~~la~~aa~~Al~d-Agl~~~~~~~~~~~gvivg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~l 207 (473)
..+|+.+|+++||+| ||+++++++ +|++|+..... .....++.+++..+
T Consensus 32 ~~~L~~~A~~~AL~~~AGl~~~dId-----~vi~g~~~~~~-------------------------~~~~~~a~~va~~l 81 (407)
T 3svk_A 32 PLNLVVGLVDELRRRYPDLDETLIS-----DMILGVVSPVG-------------------------DQGGDIARTAVLAA 81 (407)
T ss_dssp HHHHHHHHHHHHHHHSTTCCGGGEE-----EEEEECC---------------------------------CHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhhhcCcCHHHCC-----EEEEEecCccc-------------------------cccCcHHHHHHHHc
Confidence 468999999999999 999988887 89998753210 01134567899999
Q ss_pred CC--CCCeeeecCCcchHHHHHHHHHHHHHcCCCCEEEEeecCCCcChHHH--------------------HHHh-----
Q 011989 208 GF--QGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSM--------------------AGFC----- 260 (473)
Q Consensus 208 gl--~Gp~~~v~~acasg~~Al~~A~~~I~~G~~d~vlv~g~d~~~~~~~~--------------------~~~~----- 260 (473)
|+ ++|+++|+++|+|++.||..|+++|++|++|+|||+|+|.++..... ....
T Consensus 82 Glp~~~pa~~v~~~Css~~~Al~~A~~~I~sG~~d~vLv~G~e~~s~~p~~~~~~~~~~~~~~~~~~~~~~~g~~Ae~~a 161 (407)
T 3svk_A 82 GLPETTGGVQLNRFCASGLEAVNTAAQKVRSGWDDLVLAGGVESMSRVPMGSDGGAWATDPETNYRIGFVPQGIGADLIA 161 (407)
T ss_dssp TCCTTCEEEEEC---CBSCCHHHHHHHHHHHTSCCEEEEEEEECC-----------CCCCTTTCCCCCCHHHHHHHHHHH
T ss_pred CCCCCCceEEecCcChhHHHHHHHHHHHHHcCCCCEEEEEEEcccccCcccccccccccCchhhccccccCHHHHHHHHH
Confidence 99 57999999999999999999999999999999999999987652110 0000
Q ss_pred -----------------hhhc---ccc-ccC--------------CCCCCCCcC-------------ccC----------
Q 011989 261 -----------------KSRA---LTT-KYN--------------GTPQEASRP-------------FDC---------- 282 (473)
Q Consensus 261 -----------------~~~~---~~~-~~~--------------~~~~~~~~p-------------fd~---------- 282 (473)
...+ ... .+. ..++..+|+ |+.
T Consensus 162 ~~~~i~re~~d~~a~~s~~~A~~A~~~g~~~~ei~pv~~~~g~~~~~pd~~~r~~~t~e~l~~~~~vf~~~g~v~~~~~~ 241 (407)
T 3svk_A 162 TLEGFSREDVDAYALRSQQKAAAAWSGGYFAKSVVPVRDQNGLVILDHDEHMRPDTTMEGLAKLKTAFDGVGEMGGFDDV 241 (407)
T ss_dssp HHHTCCHHHHHHHHHHHHHHHHHHHHTTTTTTTBCCEECTTSCEEECSCTTCCTTCCHHHHHTSCBSCC-----------
T ss_pred HHhCcCHHHHHHHHHHHHHHHHHHHHcCCcccceeeeecCCCceeeCCccccCCCCCHHHHhhCCCeecCCCcccccccc
Confidence 0000 000 000 112333332 432
Q ss_pred ----------------CCCceeeccceEEEEEccchHHHhcCCeEEEEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHH
Q 011989 283 ----------------GRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALK 346 (473)
Q Consensus 283 ----------------~~~G~~~geGaaavvL~~~~~A~~~g~~~~a~i~g~~~~~d~~~~~~~~~~~~~~~~a~~~al~ 346 (473)
..+...++||++++||++++.|+++|.+++++|.|++.+.+. |.....+...+++++|+
T Consensus 242 ~~~~~~~~~~i~~~~t~~~~s~~~DGAaavvL~s~~~A~~~g~~~~a~i~g~~~~~~~-----p~~~~~~~~~a~~~al~ 316 (407)
T 3svk_A 242 ALQKYHWVEKINHVHTGGNSSGIVDGAALVLVGSEKAGKSQGLTPRARIVATATSGSD-----PVIMLTGPTPATRKVLD 316 (407)
T ss_dssp --CTTTTCSSCCCCCBTTTBCCBEEEEEEEEEECHHHHHHTTCCCCEEEEEEEEC-----------CCCTHHHHHHHHHH
T ss_pred ccccccccccccccccccccCcccCceeEEEEeeHHHHHHcCCCCcEEEEEEEEeccC-----CccccHHHHHHHHHHHH
Confidence 135556999999999999999999999999999999997753 22223345789999999
Q ss_pred HcCCCCCCccEEEEcCCCCCCCCHHHHHHHHHHhhcccCCCCceeeccccchhhhHHhHHHHHHHHHHHHHHhCccCCCC
Q 011989 347 QSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLAIHHGVAPLTL 426 (473)
Q Consensus 347 ~agl~~~dId~v~~hgtgt~~~D~~E~~a~~~~~~~~~~~~~~~v~s~k~~~Gh~~~AsG~~~li~~~~~l~~~~ipp~~ 426 (473)
++|++++||||+|+|.+.+.. |...+ +.++... .+++++..+..+||++||+|+.++++++++|+++
T Consensus 317 ~Agl~~~dId~~e~hdaf~~~----~l~~~-~~lg~~~--~~vn~~Gg~~~~GHp~gasG~~~~~~~~~~L~~~------ 383 (407)
T 3svk_A 317 RAGLTIDDIDLFELNEAFASV----VLKFQ-KDLNIPD--EKLNVNGGAIAMGHPLGATGAMITGTMVDELERR------ 383 (407)
T ss_dssp HHTCCGGGCSEEEECCSBHHH----HHHHH-HHHTCCG--GGBSTTCCHHHHCBCGGGHHHHHHHHHHHHHHHH------
T ss_pred HcCCCHHHCCEEEEeChhHHH----HHHHH-HHhCCCC--CCCCCCCcHhheeCcHHHHHHHHHHHHHHHHHhc------
Confidence 999999999999999655543 33333 3344322 2455666666899999999999999999999862
Q ss_pred CCCCCCCCCCCCCCccccCCCCCCcEEEEeccccccceeeEEEeec
Q 011989 427 NLAKPDPIFNDNFMPLTASKDMPISAALSNSFGFGGTNASLLFTKC 472 (473)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~g~gG~~~~~vl~~~ 472 (473)
+.+++|++..+.||...++|||+.
T Consensus 384 ----------------------~~~~gl~~~c~ggG~g~a~~~e~~ 407 (407)
T 3svk_A 384 ----------------------NARRALITLCIGGGMGVATIIERV 407 (407)
T ss_dssp ----------------------TCCEEEEEEECSSSCEEEEEEEEC
T ss_pred ----------------------CCCEEEEEeeccCcceEEEEEEcC
Confidence 257889999999999999999973
|
| >2ebd_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, aquifex VF5, lipid metabolism, structural genomics; 2.10A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.4e-30 Score=252.89 Aligned_cols=244 Identities=17% Similarity=0.195 Sum_probs=185.6
Q ss_pred CHHHHHHHHHHHHHHHHcCCCCCCCCCCCceeEEEecCCCChhhHHHHHHHHHHhccccCCCcchhhhhhhHHHHHHHHh
Q 011989 127 ARFIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMK 206 (473)
Q Consensus 127 ~~~~~la~~aa~~Al~dAgl~~~~~~~~~~~gvivg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~ 206 (473)
++..+|+++|+++||+|||+++++++ +|++++..+.. ..+..+.+++..
T Consensus 48 ~~~~~l~~~a~~~al~~ag~~~~~id-----~v~~~~~~~~~--------------------------~~~~~a~~v~~~ 96 (309)
T 2ebd_A 48 ETITYMATQAAKEALREANLSPEELD-----LIILATLTPQK--------------------------RFPSTACLVQAQ 96 (309)
T ss_dssp CCHHHHHHHHHHHHHHHHTCCGGGCS-----EEEEECSSCSS--------------------------SSSCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCCHHHCC-----EEEEEcCCCCC--------------------------CCCcHHHHHHHH
Confidence 56789999999999999999888776 89999865321 112367899999
Q ss_pred cCCCC-CeeeecCCcchHHHHHHHHHHHHHcCCCCEEEEeecCCCcChHHHHHHhhhhccccccCCCCCCCCcCccCCCC
Q 011989 207 YGFQG-PNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRD 285 (473)
Q Consensus 207 lgl~G-p~~~v~~acasg~~Al~~A~~~I~~G~~d~vlv~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pfd~~~~ 285 (473)
||+++ |+++++++|+|++.||..|+++|++|++|.+||+|+|.+... + . |+.+.+
T Consensus 97 lgl~~~~~~~v~~~C~s~~~al~~A~~~i~~g~~~~vlv~g~e~~s~~-----------~------------~-~~~~~~ 152 (309)
T 2ebd_A 97 LKAKGVYAFDISAACSGFIYALDIADSFIKSGKAKNVLVIGAEKLSEA-----------V------------D-WEDRST 152 (309)
T ss_dssp HTCTTCEEEEEECGGGHHHHHHHHHHHHHHTTSCSEEEEEEEEEGGGT-----------C------------C-TTCTTT
T ss_pred hCCCCceEEecCccchHHHHHHHHHHHHHHCCCCCEEEEEEecccccc-----------c------------C-ccchhh
Confidence 99998 999999999999999999999999999999999999974321 0 1 233567
Q ss_pred ceeeccceEEEEEccchHHHhcCCeEEEEEEEEEEecCCC---CCCCC-----CCChH--------HHHHHHHHHHHHcC
Q 011989 286 GFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAH---HITQP-----HIDGK--------GAILAMTRALKQSG 349 (473)
Q Consensus 286 G~~~geGaaavvL~~~~~A~~~g~~~~a~i~g~~~~~d~~---~~~~~-----~~~~~--------~~~~a~~~al~~ag 349 (473)
++++||||+|+||++.+.+ ..+++ ....+++. ++..| ...+. .+.++++++|+++|
T Consensus 153 ~~~~gdGaaA~vL~~~~~~----~~i~~----~~~~~~g~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~i~~al~~ag 224 (309)
T 2ebd_A 153 CVLFGDGAGAVVVTRSEDK----SDILA----TRMYAEGSLEELLHADNCGYIRMKGRELFKVAVRSMEEVCREVLEKAG 224 (309)
T ss_dssp TTTBCEEEEEEEEEECSSS----CEEEE----EEEEECGGGGGGEEECTTCCEEECHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccccccccEEEEEEecCCC----CceeE----EEEEecCCccceeEeCCCCeEEEccHHHHHHHHHHHHHHHHHHHHHcC
Confidence 9999999999999987643 22433 33444442 22223 22333 56789999999999
Q ss_pred CCCCCccEEEEcCCCCCCCCHHHHHHHHHHhhcccCCCCceeeccccchhhhHHhHHHHHHHHHHHHHHhCccCCCCCCC
Q 011989 350 LQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLAIHHGVAPLTLNLA 429 (473)
Q Consensus 350 l~~~dId~v~~hgtgt~~~D~~E~~a~~~~~~~~~~~~~~~v~s~k~~~Gh~~~AsG~~~li~~~~~l~~~~ipp~~~~~ 429 (473)
++++|||||++|+++++..| ++.+.|+... .++ .+.|..+||+.+|++++.|.+++. ++.+
T Consensus 225 l~~~did~~~~H~~~~~~~~-----~~~~~lg~~~--~~~--~~~~~~~Gh~~~As~~~~L~~~~~---~g~~------- 285 (309)
T 2ebd_A 225 VKPEEVSLVIPHQANVRIIN-----ALAEKLNIPK--EKV--FVNIQKYGNTSAASIPIALHEAIK---EGKV------- 285 (309)
T ss_dssp CCGGGCSEEEECCSCHHHHH-----HHHHHTTCCG--GGB--CCCHHHHCBCGGGHHHHHHHHHHH---TTCC-------
T ss_pred CCHHHCCEEEEcCCCHHHHH-----HHHHHhCCCH--HHh--hhhHhhhcchHHHHHHHHHHHHHH---cCCC-------
Confidence 99999999999999998754 4566676532 123 356889999999999998877643 3321
Q ss_pred CCCCCCCCCCCccccCCCCCCcEEEEeccccccceeeEEEe
Q 011989 430 KPDPIFNDNFMPLTASKDMPISAALSNSFGFGGTNASLLFT 470 (473)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~~~~~l~~s~g~gG~~~~~vl~ 470 (473)
.+.+.++..+||.|.+..+++|+
T Consensus 286 ------------------~~G~~~l~~~~G~G~~~~~~~l~ 308 (309)
T 2ebd_A 286 ------------------KRGDLILMTAMGGGLTWGAVLLR 308 (309)
T ss_dssp ------------------CTTCEEEEEEEETTTEEEEEEEE
T ss_pred ------------------CCCCEEEEEEEchhhhhEEEEEE
Confidence 12357788899999999999986
|
| >1hnj_A Beta-ketoacyl-acyl carrier protein synthase III; FABH, transferase; HET: MLC; 1.46A {Escherichia coli} SCOP: c.95.1.2 c.95.1.2 PDB: 1hn9_A* 1hnh_A* 1hnd_A* 1hnk_A 1mzs_A* 2eft_A* 2gyo_A* 3il9_A 1ebl_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=4.5e-30 Score=251.87 Aligned_cols=248 Identities=17% Similarity=0.166 Sum_probs=184.2
Q ss_pred cCHHHHHHHHHHHHHHHHcCCCCCCCCCCCceeEEEecCCCChhhHHHHHHHHHHhccccCCCcchhhhhhhHHHHHHHH
Q 011989 126 IARFIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSM 205 (473)
Q Consensus 126 ~~~~~~la~~aa~~Al~dAgl~~~~~~~~~~~gvivg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~ 205 (473)
.++..+|+++|+++||+|||+++++++ +|++|+..+. ...+..+.+++.
T Consensus 48 ~~~~~~l~~~a~~~al~~ag~~~~~id-----~vi~g~~~~~--------------------------~~~~~~a~~v~~ 96 (317)
T 1hnj_A 48 NETVSTMGFEAATRAIEMAGIEKDQIG-----LIVVATTSAT--------------------------HAFPSAACQIQS 96 (317)
T ss_dssp TCCHHHHHHHHHHHHHHHHTCCGGGCC-----EEEEECSCCS--------------------------CSSSCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCCHHHCC-----EEEEEcCCCC--------------------------CCCCcHHHHHHH
Confidence 346789999999999999999887776 8888885421 112346789999
Q ss_pred hcCCC-CCeeeecCCcchHHHHHHHHHHHHHcCCCCEEEEeecCCCcChHHHHHHhhhhccccccCCCCCCCCcCccCCC
Q 011989 206 KYGFQ-GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGR 284 (473)
Q Consensus 206 ~lgl~-Gp~~~v~~acasg~~Al~~A~~~I~~G~~d~vlv~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pfd~~~ 284 (473)
.||++ +|+++++++|+|++.||..|+++|++|++|+|||+|+|.++... . |+.+.
T Consensus 97 ~lgl~~~~~~~v~~aCas~~~al~~A~~~i~~g~~~~vlv~g~e~~s~~~-----------------------~-~~d~~ 152 (317)
T 1hnj_A 97 MLGIKGCPAFDVAAACAGFTYALSVADQYVKSGAVKYALVVGSDVLARTC-----------------------D-PTDRG 152 (317)
T ss_dssp HHTCCSSCEEEECCGGGHHHHHHHHHHHHHHTTSCSEEEEEEEECHHHHS-----------------------C-TTCHH
T ss_pred HhCCCCCeEEeeCcccHHHHHHHHHHHHHHHCCCCCEEEEEEechhcccC-----------------------C-chhcc
Confidence 99998 89999999999999999999999999999999999999732110 0 22233
Q ss_pred CceeeccceEEEEEccchHHHhcCCeEEEEEEEE-EEecCCCCCCCC-----------CCChH--------HHHHHHHHH
Q 011989 285 DGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGY-GMSGDAHHITQP-----------HIDGK--------GAILAMTRA 344 (473)
Q Consensus 285 ~G~~~geGaaavvL~~~~~A~~~g~~~~a~i~g~-~~~~d~~~~~~~-----------~~~~~--------~~~~a~~~a 344 (473)
+|+++||||+|+||++.+. ..+++.+.+. +...+..+.+.+ ...+. .+.++++++
T Consensus 153 ~~~~~GdGA~A~vL~~~~~-----~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~a 227 (317)
T 1hnj_A 153 TIIIFGDGAGAAVLAASEE-----PGIISTHLHADGSYGELLTLPNADRVNPENSIHLTMAGNEVFKVAVTELAHIVDET 227 (317)
T ss_dssp HHTTBCCEEEEEEEEEESS-----CSEEEEEEEECGGGGGGEECCCCCSSCTTSCCSCEECHHHHHHHHHHHHHHHHHHH
T ss_pred cceeeccccEEEEEEecCC-----CceeeEEEEEcCCCCCeEEECCCCCCCCCCCceEEecCHHHHHHHHHHHHHHHHHH
Confidence 4899999999999997653 2466665442 111122222211 12233 567899999
Q ss_pred HHHcCCCCCCccEEEEcCCCCCCCCHHHHHHHHHHhhcccCCCCceeeccccchhhhHHhHHHHHHHHHHHHHHhCccCC
Q 011989 345 LKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLAIHHGVAPL 424 (473)
Q Consensus 345 l~~agl~~~dId~v~~hgtgt~~~D~~E~~a~~~~~~~~~~~~~~~v~s~k~~~Gh~~~AsG~~~li~~~~~l~~~~ipp 424 (473)
|+++|++++|||||++|++|++..| ++.+.|+... -.+.++|..+||+.+|+..+.|..+ ++.+.+.
T Consensus 228 L~~agl~~~did~v~~H~~~~~~~d-----~i~~~lg~~~----~~~~~~~~~~Gn~~~As~~~~L~~~---~~~~~~~- 294 (317)
T 1hnj_A 228 LAANNLDRSQLDWLVPHQANLRIIS-----ATAKKLGMSM----DNVVVTLDRHGNTSAASVPCALDEA---VRDGRIK- 294 (317)
T ss_dssp HHHTTCCGGGCCEEEECCSCHHHHH-----HHHHHTTCCG----GGBCCCHHHHCBCGGGHHHHHHHHH---HHTTCSC-
T ss_pred HHHcCCCHHHCCEEEEcCCCHHHHH-----HHHHHcCCCH----HHhHhhHhhhCcHHHHHHHHHHHHH---HHhCCCC-
Confidence 9999999999999999999999866 4566676532 1345788999999999999877655 3433321
Q ss_pred CCCCCCCCCCCCCCCCccccCCCCCCcEEEEeccccccceeeEEEe
Q 011989 425 TLNLAKPDPIFNDNFMPLTASKDMPISAALSNSFGFGGTNASLLFT 470 (473)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~g~gG~~~~~vl~ 470 (473)
+-+.++..+||.|.+..+++|+
T Consensus 295 ------------------------~G~~vll~~~G~G~t~~~~~l~ 316 (317)
T 1hnj_A 295 ------------------------PGQLVLLEAFGGGFTWGSALVR 316 (317)
T ss_dssp ------------------------TTCEEEEEEEETTTEEEEEEEE
T ss_pred ------------------------CCCEEEEEEEchhheeEEEEEE
Confidence 1346777899999998888886
|
| >1mzj_A Beta-ketoacylsynthase III; beta-ketosynthase, aromatic polyketide, biosynthetic engineering, catalytic triad, transferase; HET: COA; 2.10A {Streptomyces SP} SCOP: c.95.1.2 c.95.1.2 | Back alignment and structure |
|---|
Probab=99.96 E-value=1.6e-29 Score=250.28 Aligned_cols=248 Identities=19% Similarity=0.168 Sum_probs=180.8
Q ss_pred CHHHHHHHHHHHHHHHHcCCCCCCCCCCCceeEEEecCCCChhhHHHHHHHHHHhccccCCCcchhhhhhhHHHHHHHHh
Q 011989 127 ARFIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMK 206 (473)
Q Consensus 127 ~~~~~la~~aa~~Al~dAgl~~~~~~~~~~~gvivg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~ 206 (473)
++..+|+++|+++||+|||+++++++ +|++|++.+.. ..+..+.+++..
T Consensus 58 ~~~~~la~~Aa~~al~~ag~~~~~id-----~vi~gt~~~~~--------------------------~~p~~a~~v~~~ 106 (339)
T 1mzj_A 58 ETIQVMGVAASRRALEHAGVDPAEID-----LVVVSTMTNFV--------------------------HTPPLSVAIAHE 106 (339)
T ss_dssp CCHHHHHHHHHHHHHHHHTCCGGGCC-----EEEEECSCCCC--------------------------CSSCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCCHHHCC-----EEEEEecCCCC--------------------------CCChHHHHHHHH
Confidence 45789999999999999999887776 89999865321 012257799999
Q ss_pred cCCC-CCeeeecCCcchHHHHHHHHHHHHHcCCCCEEEEeecCCCcChHHHHHHhhhhccccccCCCCCCCCcCccCCCC
Q 011989 207 YGFQ-GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRD 285 (473)
Q Consensus 207 lgl~-Gp~~~v~~acasg~~Al~~A~~~I~~G~~d~vlv~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pfd~~~~ 285 (473)
||++ +|+++++++|+|++.||..|+++|++|++|.|||+|+|.++ +.. . ++.+.+
T Consensus 107 lgl~~~~~~~v~~aCas~~~Al~~A~~~i~~G~~~~vLv~g~e~~s-~~~----------------------~-~~d~~~ 162 (339)
T 1mzj_A 107 LGADNAGGFDLSAACAGFCHALSIAADAVESGGSRHVLVVATERMT-DVI----------------------D-LADRSL 162 (339)
T ss_dssp HTCTTCEEEEEECGGGHHHHHHHHHHHHHHHSSCSCEEEEEEEEGG-GGS----------------------C-SSCTTT
T ss_pred hCCCCccEEEccccchHHHHHHHHHHHHHHCCCCCEEEEEEEcccc-ccc----------------------C-cccccc
Confidence 9998 69999999999999999999999999999999999999743 210 0 122467
Q ss_pred ceeeccceEEEEEccchHHHhcCCeEEEEE-EEEEEecCCCCCC--CCC-------------CCh--------HHHHHHH
Q 011989 286 GFVIGEGSGVLVLEELEHAKKRGAKIYAEV-RGYGMSGDAHHIT--QPH-------------IDG--------KGAILAM 341 (473)
Q Consensus 286 G~~~geGaaavvL~~~~~A~~~g~~~~a~i-~g~~~~~d~~~~~--~~~-------------~~~--------~~~~~a~ 341 (473)
++++||||+|+||++.+. ..+++.. .+.+...+..+.+ .|+ ..+ ..+.+++
T Consensus 163 ~~~~GdGA~A~vL~~~~~-----~~i~~~~~~~~g~~~~~~~~~g~~p~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~i 237 (339)
T 1mzj_A 163 SFLFGDGAGAAVVGPSDV-----PGIGPVVRGIDGTGLGSLHMSSSWDQYVEDPSVGRPALVMDGKRVFRWAVADVVPAA 237 (339)
T ss_dssp TTTBCEEEEEEEEEEESS-----CCBCCCEEEECGGGGGGEEESCCHHHHTTCSSSCSCCEEECHHHHHHHHHHHHHHHH
T ss_pred ceEeccCceEEEEEecCC-----CCeEEEEEEEcCCCCCeEEecCCCCCcccccccccceEEeeCHHHHHHHHHHHHHHH
Confidence 999999999999997642 2333321 1211111111111 011 012 4577899
Q ss_pred HHHHHHcCCCCCCccEEEEcCCCCCCCCHHHHHHHHHHhhcccCCC-CceeeccccchhhhHHhHHHHHHHHHHHHHHhC
Q 011989 342 TRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSG-SLAFSSTKGAIGHLLGAAGAVEAIFAVLAIHHG 420 (473)
Q Consensus 342 ~~al~~agl~~~dId~v~~hgtgt~~~D~~E~~a~~~~~~~~~~~~-~~~v~s~k~~~Gh~~~AsG~~~li~~~~~l~~~ 420 (473)
+++|+++|++++|||||++|++|++.+|. +.+.++... . +++ .....+||+.+|+..+.|.+++ +.+
T Consensus 238 ~~aL~~agl~~~did~v~~H~~~~~~~d~-----i~~~lg~~~--~~~~~--~~~~~~Gn~~sAs~~~~L~~~~---~~g 305 (339)
T 1mzj_A 238 REALEVAGLTVGDLVAFVPHQANLRIIDV-----LVDRLGVPE--HVVVS--RDAEDTGNTSSASVALALDRLV---RSG 305 (339)
T ss_dssp HHHHHTTTCCGGGCSEEEECCSCHHHHHH-----HHHHHTCCT--TSEEC--CTHHHHCBCTTHHHHHHHHHHH---HHT
T ss_pred HHHHHHcCCCHHHCCEEEECCCCHHHHHH-----HHHHhCCCc--cceee--ehhhhcCchHHHHHHHHHHHHH---HcC
Confidence 99999999999999999999999998775 455566432 1 232 3346899999999998776553 443
Q ss_pred ccCCCCCCCCCCCCCCCCCCccccCCCCCCcEEEEeccccccceeeEEEee
Q 011989 421 VAPLTLNLAKPDPIFNDNFMPLTASKDMPISAALSNSFGFGGTNASLLFTK 471 (473)
Q Consensus 421 ~ipp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~g~gG~~~~~vl~~ 471 (473)
.+ .+.+.++..+||.|.+..+++|+-
T Consensus 306 ~~-------------------------~~G~~vll~~~G~G~t~~~~~l~~ 331 (339)
T 1mzj_A 306 AV-------------------------PGGGPALMIGFGAGLSYAGQALLL 331 (339)
T ss_dssp SS-------------------------CTTCEEEEEEEETTTEEEEEEEEC
T ss_pred CC-------------------------CCCCEEEEEEEchhheeEEEEEEe
Confidence 32 123578888999999999999863
|
| >1zow_A 3-oxoacyl-[acyl-carrier-protein] synthase III; FABH, fatty acid biosynthesis, transferase; 2.00A {Staphylococcus aureus subsp} PDB: 3il7_A | Back alignment and structure |
|---|
Probab=99.95 E-value=3.7e-29 Score=244.98 Aligned_cols=244 Identities=18% Similarity=0.234 Sum_probs=182.0
Q ss_pred CHHHHHHHHHHHHHHHHcCCCCCCCCCCCceeEEEecCCCChhhHHHHHHHHHHhccccCCCcchhhhhhhHHHHHHHHh
Q 011989 127 ARFIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMK 206 (473)
Q Consensus 127 ~~~~~la~~aa~~Al~dAgl~~~~~~~~~~~gvivg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~ 206 (473)
.+..+|+++|+++||+|||+++++++ +|+++++.+.. . .+..+.+++..
T Consensus 49 ~~~~~l~~~a~~~al~~ag~~~~~id-----~vi~~~~~~~~---------------------~-----~~~~a~~v~~~ 97 (313)
T 1zow_A 49 QDTSDLAYEASVKAIADAGIQPEDID-----MIIVATATGDM---------------------P-----FPTVANMLQER 97 (313)
T ss_dssp CCHHHHHHHHHHHHHHHHTCCGGGCC-----EEEEECSSCSC---------------------S-----SSCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCCHHHCC-----EEEEEcCCCCC---------------------C-----CCcHHHHHHHH
Confidence 34689999999999999999887776 88998865321 1 11356799999
Q ss_pred cCCC-CCeeeecCCcchHHHHHHHHHHHHHcCCCCEEEEeecCCCcChHHHHHHhhhhccccccCCCCCCCCcCccCCCC
Q 011989 207 YGFQ-GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRD 285 (473)
Q Consensus 207 lgl~-Gp~~~v~~acasg~~Al~~A~~~I~~G~~d~vlv~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pfd~~~~ 285 (473)
+|++ +|+++++++|+|++.||..|+++|++|++|+|||+|+|.++.. .+|+|. .+
T Consensus 98 lgl~~~~~~~v~~aCas~~~al~~A~~~i~~g~~~~vLv~g~e~~s~~-----------------------~~~~d~-~~ 153 (313)
T 1zow_A 98 LGTGKVASMDQLAACSGFMYSMITAKQYVQSGDYHNILVVGADKLSKI-----------------------TDLTDR-ST 153 (313)
T ss_dssp HTCCSCCEEEEECGGGHHHHHHHHHHHHHHTTSCSCEEEEEEEEGGGT-----------------------CCTTCH-HH
T ss_pred hCCCCCcEEEECCcCHHHHHHHHHHHHHHHCCCCCEEEEEEEcccccc-----------------------cCcccc-cc
Confidence 9998 5999999999999999999999999999999999999974321 123432 36
Q ss_pred ceeeccceEEEEEccchHHHhcCCeEEEEEEEEEEecCCC-----CCCCC----CCCh--------HHHHHHHHHHHHHc
Q 011989 286 GFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAH-----HITQP----HIDG--------KGAILAMTRALKQS 348 (473)
Q Consensus 286 G~~~geGaaavvL~~~~~A~~~g~~~~a~i~g~~~~~d~~-----~~~~~----~~~~--------~~~~~a~~~al~~a 348 (473)
++++|||++|+||++.+. +.+++ ++...+++. +...| ...+ ..+.++++++|+++
T Consensus 154 ~~~~gdGa~A~vl~~~~~----~~~i~----~~~~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~al~~a 225 (313)
T 1zow_A 154 AVLFGDGAGAVIIGEVSE----GRGII----SYEMGSDGTGGKHLYLDKDTGKLKMNGREVFKFAVRIMGDASTRVVEKA 225 (313)
T ss_dssp HTTBCEEEEEEEEEECST----TCEEE----EEEEEECGGGGGGEEECTTTCCEEECHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred eeeeccceEEEEEEecCC----CCcee----EEEEEEcCCCcCeEEecCCCCeeEeccHHHHHHHHHHHHHHHHHHHHHc
Confidence 899999999999997653 23343 333333322 12111 1122 35678999999999
Q ss_pred CCCCCCccEEEEcCCCCCCCCHHHHHHHHHHhhcccCCCCceeeccccchhhhHHhHHHHHHHHHHHHHHhCccCCCCCC
Q 011989 349 GLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLAIHHGVAPLTLNL 428 (473)
Q Consensus 349 gl~~~dId~v~~hgtgt~~~D~~E~~a~~~~~~~~~~~~~~~v~s~k~~~Gh~~~AsG~~~li~~~~~l~~~~ipp~~~~ 428 (473)
|++++|||||++|+++++..|.+ .+.|+... .+++ ..|..+||+.+|++++.|.+++ +++.+
T Consensus 226 gl~~~did~~~~H~~~~~~~d~~-----~~~lg~~~--~~~~--~~~~~~Gh~~~as~~~~L~~~~---~~~~~------ 287 (313)
T 1zow_A 226 NLTSDDIDLFIPHQANIRIMESA-----RERLGISK--DKMS--VSVNKYGNTSAASIPLSIDQEL---KNGKL------ 287 (313)
T ss_dssp TCCGGGCSEEEECCSCHHHHHHH-----HHHHTCCG--GGBC--CCHHHHCBCGGGHHHHHHHHHH---HTTCC------
T ss_pred CCCHHHCCEEEEcCCCHHHHHHH-----HHHhCCCH--HHHH--HhHhhhCchHHHHHHHHHHHHH---HcCCC------
Confidence 99999999999999999987764 45565432 1233 3589999999999999887653 33321
Q ss_pred CCCCCCCCCCCCccccCCCCCCcEEEEeccccccceeeEEEe
Q 011989 429 AKPDPIFNDNFMPLTASKDMPISAALSNSFGFGGTNASLLFT 470 (473)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~g~gG~~~~~vl~ 470 (473)
.+.+.+++.+||.|.+..++||+
T Consensus 288 -------------------~~g~~vl~~~~G~G~t~~~~~l~ 310 (313)
T 1zow_A 288 -------------------KDDDTIVLVGFGGGLTWGAMTIK 310 (313)
T ss_dssp -------------------CTTCEEEEEEEETTTEEEEEEEE
T ss_pred -------------------CCCCEEEEEEEchhhhheEEEEE
Confidence 12457888999999999999986
|
| >2x3e_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; HED, transferase, acyltransferase, lipid synthesis, multifun enzyme; 1.81A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.6e-27 Score=235.05 Aligned_cols=245 Identities=17% Similarity=0.208 Sum_probs=179.6
Q ss_pred CHHHHHHHHHHHHHHHHcCCCCCCCCCCCceeEEEecCCCChhhHHHHHHHHHHhccccCCCcchhhhhhhHHHHHHHHh
Q 011989 127 ARFIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMK 206 (473)
Q Consensus 127 ~~~~~la~~aa~~Al~dAgl~~~~~~~~~~~gvivg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~ 206 (473)
++..+|+++|+++||+|||+ ++++ .|+++++.+.. ..+..+.+++..
T Consensus 51 ~~~~~la~~Aa~~al~~ag~--~~id-----~vi~~t~~~~~--------------------------~~p~~a~~v~~~ 97 (331)
T 2x3e_A 51 LGSGDLALRAASAALASAGL--ERVD-----AVVLATSTGDF--------------------------CCPATAPRVAAR 97 (331)
T ss_dssp CCHHHHHHHHHHHHHHHHTC--SCCS-----EEEEECSSCSE--------------------------EESCSHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhCCc--ccCC-----EEEEEeCCCCC--------------------------CCChHHHHHHHH
Confidence 56789999999999999998 5665 78888754321 112356799999
Q ss_pred cCCC-CCeeeecCCcchHHHHHHHHHHHHHcCCCCEEEEeecCCCcChHHHHHHhhhhccccccCCCCCCCCcCccCCCC
Q 011989 207 YGFQ-GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRD 285 (473)
Q Consensus 207 lgl~-Gp~~~v~~acasg~~Al~~A~~~I~~G~~d~vlv~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pfd~~~~ 285 (473)
||++ +|+++++++|+|++.||..|+++|++|.+|.|||+|+|.++ +.. . ++.+.+
T Consensus 98 lgl~~~~~~~v~~aCas~~~Al~~A~~~i~~g~~~~vLv~g~e~~s-~~~----------~-------------~~d~~~ 153 (331)
T 2x3e_A 98 LGLVGALAFDLSAAATGFVYGLASVGSLISAGLADSALLVGVDTFS-HTL----------D-------------PADRST 153 (331)
T ss_dssp TTCTTSEEEEEECGGGHHHHHHHHHHHHHHTTSCSEEEEEEEECGG-GGS----------C-------------TTCHHH
T ss_pred hCCCCCcEEEEcCcChHHHHHHHHHHHHHHcCCCCEEEEEEeeccc-cCC----------C-------------cccccc
Confidence 9998 79999999999999999999999999999999999999743 210 0 112346
Q ss_pred ceeeccceEEEEEccchHHHhcCCeEEEEEEEEEEecCCC---CCCCCC----------------CCh--------HHHH
Q 011989 286 GFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAH---HITQPH----------------IDG--------KGAI 338 (473)
Q Consensus 286 G~~~geGaaavvL~~~~~A~~~g~~~~a~i~g~~~~~d~~---~~~~~~----------------~~~--------~~~~ 338 (473)
++++||||+|+||++.+.+ ++..+++ ....+++. .+..|. ..+ ..+.
T Consensus 154 ~~~~GdGA~A~vL~~~~~a--~~~~i~~----~~~~~dg~~~~~~~~p~~~~~~p~~~~~~~~~~~~g~~v~~~~~~~~~ 227 (331)
T 2x3e_A 154 RALFGDGAGAVVLRAGDAE--EEGALLA----FDLGSDGHQFDLLMTPAVSRAERSSGQASNYFRMDGKAVFGQAVTQMS 227 (331)
T ss_dssp HHHBCCEEEEEEEEEECTT--STTBEEE----EEEEECGGGTTSEEEECCCHHHHHHTCCCCCCEECHHHHHHHHHHHHH
T ss_pred ceeeccccEEEEEEecCCC--CCCceEE----EEEEEcCCCCCeEEecCCCCCCCCccCcCceEEecCHHHHHHHHHHHH
Confidence 8899999999999987654 3334443 33334432 111111 112 4567
Q ss_pred HHHHHHHHHcCCCCCCccEEEEcCCCCCCCCHHHHHHHHHHhhcccCCCCceeeccccchhhhHHhHHHHHHHHHHHHHH
Q 011989 339 LAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLAIH 418 (473)
Q Consensus 339 ~a~~~al~~agl~~~dId~v~~hgtgt~~~D~~E~~a~~~~~~~~~~~~~~~v~s~k~~~Gh~~~AsG~~~li~~~~~l~ 418 (473)
++++++|+++|++++|||||++|+++++..|. +.+.++... .+++. ....+||+.+|+..+.|..+ ++
T Consensus 228 ~~i~~aL~~agl~~~did~~~~H~~~~~~~d~-----~~~~lg~~~--~~~~~--~~~~~Gnt~sAs~~~~L~~~---~~ 295 (331)
T 2x3e_A 228 DSVRRVLDRVGWQASDLHHLVPHQANTRILAA-----VADQLDLPV--ERVVS--NIAEVGNTVAASIPLALAHG---LR 295 (331)
T ss_dssp HHHHHHHHHHTCCGGGCSEEEECCCCHHHHHH-----HHHHHTCCG--GGBCC--CHHHHCBCGGGHHHHHHHHH---HH
T ss_pred HHHHHHHHHcCCCHHHCCEEEEcCCCHHHHHH-----HHHHcCCCH--HHHhh--hHhhhCcHHHHHHHHHHHHH---HH
Confidence 89999999999999999999999999998775 445565432 12332 35799999999988766544 34
Q ss_pred hCccCCCCCCCCCCCCCCCCCCccccCCCCCCcEEEEeccccccceeeEEEee
Q 011989 419 HGVAPLTLNLAKPDPIFNDNFMPLTASKDMPISAALSNSFGFGGTNASLLFTK 471 (473)
Q Consensus 419 ~~~ipp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~g~gG~~~~~vl~~ 471 (473)
.+.+ .+.+.++..+||.|.+..+++|+-
T Consensus 296 ~~~~-------------------------~~G~~vll~~~G~G~~~~~~~l~~ 323 (331)
T 2x3e_A 296 QGIL-------------------------RDGGNMVLTGFGAGLTWGSVALRW 323 (331)
T ss_dssp TTCS-------------------------CTTCEEEEEEEETTTEEEEEEEEC
T ss_pred hCCC-------------------------CCCCEEEEEEEeHHhhheeeEEEE
Confidence 3322 123578889999999999999864
|
| >1u6e_A 3-oxoacyl-[acyl-carrier-protein] synthase III; transferase; 1.85A {Mycobacterium tuberculosis} SCOP: c.95.1.2 c.95.1.2 PDB: 1u6s_A* 1m1m_A 1hzp_A* 2qnx_A* 2qnz_A* 2qo1_A* 2qx1_A* 2qo0_A* 2qny_A* 2ahb_A 2aj9_A | Back alignment and structure |
|---|
Probab=99.94 E-value=1.2e-27 Score=236.50 Aligned_cols=248 Identities=21% Similarity=0.244 Sum_probs=177.5
Q ss_pred CHHHHHHHHHHHHHHHHcCCCCCCCCCCCceeEEEecCCCChhhHHHHHHHHHHhccccCCCcchhhhhhhHHHHHHHHh
Q 011989 127 ARFIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMK 206 (473)
Q Consensus 127 ~~~~~la~~aa~~Al~dAgl~~~~~~~~~~~gvivg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~ 206 (473)
++..+|+++|+++||+|||+++++++ +|++++..+.. ..+..+.+++..
T Consensus 59 ~~~~~la~~A~~~al~~ag~~~~~id-----~vi~~t~~~~~--------------------------~~~~~a~~v~~~ 107 (335)
T 1u6e_A 59 ESAASMATEACRRALSNAGLSAADID-----GVIVTTNTHFL--------------------------QTPPAAPMVAAS 107 (335)
T ss_dssp CCHHHHHHHHHHHHHHHHTCCGGGCC-----EEEEECSCCCC--------------------------SSSCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCCHHHCC-----EEEEEcCCCCC--------------------------CCChHHHHHHHH
Confidence 45789999999999999999888776 89999865321 012467789999
Q ss_pred cCCC-CCeeeecCCcchHHHHHHHHHHHHHcCCCCEEEEeecCCCcChHHHHHHhhhhccccccCCCCCCCCcCccCCCC
Q 011989 207 YGFQ-GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRD 285 (473)
Q Consensus 207 lgl~-Gp~~~v~~acasg~~Al~~A~~~I~~G~~d~vlv~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pfd~~~~ 285 (473)
||++ +|+++++++|+|++.||.+|+++|++|++|.|||+|+|.++. ...|+| ..+
T Consensus 108 lgl~~~~~~~v~~aC~s~~~al~~A~~~i~~g~~~~vLv~g~e~~s~-----------------------~~~~~d-~~~ 163 (335)
T 1u6e_A 108 LGAKGILGFDLSAGAAGFGYALGAAADMIRGGGAATMLVVGTEKLSP-----------------------TIDMYD-RGN 163 (335)
T ss_dssp HTCTTSEEEEEECGGGHHHHHHHHHHHHHHHTSCSSEEEEEEEECGG-----------------------GCCTTC-TTT
T ss_pred hCCCCCcEeeeccccHHHHHHHHHHHHHHHcCCCCEEEEEEEccccc-----------------------ccCccc-ccc
Confidence 9998 599999999999999999999999999999999999997532 112343 357
Q ss_pred ceeeccceEEEEEccchHHHhcCCeEEEEEEEE-EEecCCCCCC--------CC-------CCCh--------HHHHHHH
Q 011989 286 GFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGY-GMSGDAHHIT--------QP-------HIDG--------KGAILAM 341 (473)
Q Consensus 286 G~~~geGaaavvL~~~~~A~~~g~~~~a~i~g~-~~~~d~~~~~--------~~-------~~~~--------~~~~~a~ 341 (473)
++++||||+|+||++.+. ++ ++..+.+. +...+..+.+ .| ...+ ..+.+++
T Consensus 164 ~~~~gDGA~A~vl~~~~~---~~--i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i 238 (335)
T 1u6e_A 164 CFIFADGAAAVVVGETPF---QG--IGPTVAGSDGEQADAIRQDIDWITFAQNPSGPRPFVRLEGPAVFRWAAFKMGDVG 238 (335)
T ss_dssp TTTBCEEEEEEEEEECSS---CC--BCCCEEEECGGGGGGEEESSCHHHHHTSTTSCCCCEEECHHHHHHHHHHHHHHHH
T ss_pred ceEeccccEEEEEEecCC---CC--eeEEEEEEcCCcccceeecCCccCcCCCccCccceEEEcCHHHHHHHHHHHHHHH
Confidence 899999999999997653 12 22233221 1111100000 00 1112 3567889
Q ss_pred HHHHHHcCCCCCCccEEEEcCCCCCCCCHHHHHHHHHHhhcccCCCCceeeccccchhhhHHhHHHHHHHHHHHHH-HhC
Q 011989 342 TRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLAI-HHG 420 (473)
Q Consensus 342 ~~al~~agl~~~dId~v~~hgtgt~~~D~~E~~a~~~~~~~~~~~~~~~v~s~k~~~Gh~~~AsG~~~li~~~~~l-~~~ 420 (473)
+++|+++|++++|||||++|+++++..|. +.+.++.... . .+...+..+||+.+|+..+. +.++ +.+
T Consensus 239 ~~al~~agl~~~dId~~~~H~~~~~~~~~-----~~~~lg~~~~-~--~~~~~~~~~Gnt~sAs~~~~----L~~~~~~~ 306 (335)
T 1u6e_A 239 RRAMDAAGVRPDQIDVFVPHQANSRINEL-----LVKNLQLRPD-A--VVANDIEHTGNTSAASIPLA----MAELLTTG 306 (335)
T ss_dssp HHHHHHHTCCGGGCCEEEECCSCHHHHHH-----HHHHHTCCTT-C--EECCTHHHHCBCGGGHHHHH----HHHHHHHT
T ss_pred HHHHHHcCCCHHHCCEEEECCCCHHHHHH-----HHHHcCCCch-h--hhhhhhhhhCcHHHHHHHHH----HHHHHHcC
Confidence 99999999999999999999999988665 4455664321 1 23334678999999996543 3333 222
Q ss_pred ccCCCCCCCCCCCCCCCCCCccccCCCCCCcEEEEeccccccceeeEEEee
Q 011989 421 VAPLTLNLAKPDPIFNDNFMPLTASKDMPISAALSNSFGFGGTNASLLFTK 471 (473)
Q Consensus 421 ~ipp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~g~gG~~~~~vl~~ 471 (473)
. ..+.+.+|+++||+|+++.++||+.
T Consensus 307 ~-------------------------~~~g~~~l~~~~G~G~t~~~~vl~~ 332 (335)
T 1u6e_A 307 A-------------------------AKPGDLALLIGYGAGLSYAAQVVRM 332 (335)
T ss_dssp S-------------------------SCTTCEEEEEEEETTTEEEEEEEEC
T ss_pred C-------------------------CCCCCEEEEEEEehhheeEEEEEEe
Confidence 1 1224688999999999999999975
|
| >1u0m_A Putative polyketide synthase; type III polyketide synthase, PKS, bacterial, thiolase fold, beta-alpha-beta-alpha fold, catalytic triad; HET: 15P; 2.22A {Streptomyces coelicolor} SCOP: c.95.1.2 c.95.1.2 | Back alignment and structure |
|---|
Probab=99.93 E-value=2.7e-27 Score=237.78 Aligned_cols=318 Identities=16% Similarity=0.117 Sum_probs=207.7
Q ss_pred eEEEecceecccCC-CHHHHHHHHHcCCCceeeCCccccccCCCCccccccccCCcccceeEEecCCCCCCCCCcccCCC
Q 011989 41 VVVTGIGMVTPLGC-GAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSKVAAVVPCGISSGEFNEDSWLN 119 (473)
Q Consensus 41 v~ItG~g~~~p~g~-~~~~~~~~l~~G~s~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~~~~~~ 119 (473)
+.|+|+|+..|... +.+++|+.+.... .+.+..+|....+ ...++..+.. ... ...|+..+-++
T Consensus 10 ~~I~gig~~~P~~~v~~~~l~~~~~~~~---~~~~~~~~~~~i~-------~~~GI~~R~~--~~~---~~~~~~~~~~~ 74 (382)
T 1u0m_A 10 ATLCRPSVSVPEHVITMEETLELARRRH---TDHPQLPLALRLI-------ENTGVRTRHI--VQP---IEDTLEHPGFE 74 (382)
T ss_dssp CEECCCEEECCSEEEEHHHHHHHHHHHH---TTCTTHHHHHHHH-------HHTCCCEEEE--SSC---HHHHTSCCCHH
T ss_pred eEEEEEEEeCCCcccCHHHHHHHHHHhc---cChhhHHHHHHHH-------HhcCCCccee--ecC---hhhhccCCChh
Confidence 69999999999864 7899998775432 1111111100000 0011111110 000 00122111133
Q ss_pred chhhhccCHHHHHHHHHHHHHHHHcCCCCCCCCCCCceeEEEecCCCChhhHHHHHHHHHHhccccCCCcchhhhhhhHH
Q 011989 120 SKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMA 199 (473)
Q Consensus 120 ~~~~~~~~~~~~la~~aa~~Al~dAgl~~~~~~~~~~~gvivg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (473)
++.....++..+|+++|+++||++||+++++++ .|++++..+ +. .+..
T Consensus 75 ~r~~~~~~~~~~la~~Aa~~aL~~agl~~~~id-----~vi~~t~~~----------------------~~-----~p~~ 122 (382)
T 1u0m_A 75 DRNKVYEREAKSRVPAVIQRALDDAELLATDID-----VIIYVSCTG----------------------FM-----MPSL 122 (382)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCCGGGCS-----EEEEECSSS----------------------CC-----SSCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHCC-----EEEEEecCC----------------------CC-----CCcH
Confidence 444444566789999999999999999887776 777777431 11 1245
Q ss_pred HHHHHHhcCCCC--Ceeee-cCCcchHHHHHHHHHHHHHcCCCCEEEEeecCCCcChHHHHHHhhhhccccccCCCCCCC
Q 011989 200 SGHVSMKYGFQG--PNHAA-VTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEA 276 (473)
Q Consensus 200 a~~ia~~lgl~G--p~~~v-~~acasg~~Al~~A~~~I~~G~~d~vlv~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (473)
+.+|+..||+++ |++++ .++|+|++.||..|+++|++|.+|.|||+|+|.++. .
T Consensus 123 a~~v~~~lGl~~~~~~~~v~~~aCss~~~Al~~A~~~i~~g~~~~vLv~g~e~~s~-~---------------------- 179 (382)
T 1u0m_A 123 TAWLINEMGFDSTTRQIPIAQLGCAAGGAAINRAHDFCTAYPEANALIVACEFCSL-C---------------------- 179 (382)
T ss_dssp HHHHHHHTTCCTTCEEEEECSCGGGHHHHHHHHHHHHHHHSTTCEEEEEEEEEGGG-G----------------------
T ss_pred HHHHHHHhCCCCCcceEEccCCcCHHHHHHHHHHHHHHHcCCCCEEEEEEEeccch-h----------------------
Confidence 679999999998 88999 899999999999999999999999999999997432 1
Q ss_pred CcCccCCCC----ceeeccceEEEEEccchHHHhcCCeEEEEEEEEEE--ecCCCC----------------CCCCCCCh
Q 011989 277 SRPFDCGRD----GFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGM--SGDAHH----------------ITQPHIDG 334 (473)
Q Consensus 277 ~~pfd~~~~----G~~~geGaaavvL~~~~~A~~~g~~~~a~i~g~~~--~~d~~~----------------~~~~~~~~ 334 (473)
.+|+|.+++ ++++||||+|+||++.+. ++ .+|.++.. ..++.+ ...+....
T Consensus 180 ~~~~d~~~~~~~~~~lfGDGA~A~vL~~~~~---~g----~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~v~~~~~ 252 (382)
T 1u0m_A 180 YQPTDLGVGSLLCNGLFGDGIAAAVVRGRGG---TG----VRLERNGSYLIPKTEDWIMYDVKATGFHFLLDKRVPATME 252 (382)
T ss_dssp CCTTCCSHHHHHHHHHBCEEEEEEEEETTTC---SE----EEEEEEEEEECSSCTTTEEEEEETTEEEEEECTTTGGGHH
T ss_pred cCcccCCHHHhhccchhcCCcEEEEEeccCC---CC----cEEEEeeeEecCChHHhcCceecCCceEEEeCcHHHHHHH
Confidence 123443333 889999999999987543 22 24555443 233321 01122224
Q ss_pred HHHHHHHHHHHHHcCCCCCCccEEEEcCCCCCCCCHHHHHHHHHHhhcccCCCCcee-eccccchhhhHHhHHHHHHHHH
Q 011989 335 KGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAF-SSTKGAIGHLLGAAGAVEAIFA 413 (473)
Q Consensus 335 ~~~~~a~~~al~~agl~~~dId~v~~hgtgt~~~D~~E~~a~~~~~~~~~~~~~~~v-~s~k~~~Gh~~~AsG~~~li~~ 413 (473)
..+. +++++|+++|++++|||||++|+++++..|.+ .+.++... .++++ ...+..+||+.+|+..+.|..+
T Consensus 253 ~~~~-~i~~aL~~agl~~~dId~v~~H~~~~~i~d~~-----~~~lgl~~--~k~~~s~~~~~~~Gnt~sAsi~~~L~~~ 324 (382)
T 1u0m_A 253 PLAP-ALKELAGEHGWDASDLDFYIVHAGGPRILDDL-----STFLEVDP--HAFRFSRATLTEYGNIASAVVLDALRRL 324 (382)
T ss_dssp HHHH-HHHHHHHTTSCCSSCCSCCEEECSHHHHHHHH-----HHHSCSCG--GGGHHHHHHHHHTCBCTTHHHHHHHHHH
T ss_pred HHHH-HHHHHHHHcCCCHHHCCEEEECCCCHHHHHHH-----HHHcCCCH--HHHHHHHHHHHHhCCchhhHHHHHHHHH
Confidence 5667 99999999999999999999999999876643 34444321 12332 2457789999999988766555
Q ss_pred HHHHHhCccCCCCCCCCCCCCCCCCCCccccCCCCCCcEEEEeccccccceeeEEEee
Q 011989 414 VLAIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPISAALSNSFGFGGTNASLLFTK 471 (473)
Q Consensus 414 ~~~l~~~~ipp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~g~gG~~~~~vl~~ 471 (473)
+ +.+.+. +-..++..+||.|.+..+++|+-
T Consensus 325 ~---~~g~~~-------------------------~Gd~vll~~~G~G~t~~~~vl~~ 354 (382)
T 1u0m_A 325 F---DEGGVE-------------------------EGARGLLAGFGPGITAEMSLGCW 354 (382)
T ss_dssp H---HSCCCC-------------------------SSCCCEEEEEETTTEEEEEEEEE
T ss_pred H---HhcCCC-------------------------CCCEEEEEEEcccceeEEEEEEE
Confidence 4 333321 12356667999998988888864
|
| >4egv_A Acetyl-COA acetyltransferase; NEW SUB-family, thiolase fold; 2.71A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=99.93 E-value=6e-28 Score=250.07 Aligned_cols=283 Identities=15% Similarity=0.081 Sum_probs=182.9
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCCceeEEEecCCCChhhHHHHHHHHHHhccccCCCcchhhhhhhHHHHHHHHhcCC
Q 011989 130 IAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYGF 209 (473)
Q Consensus 130 ~~la~~aa~~Al~dAgl~~~~~~~~~~~gvivg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lgl 209 (473)
.+|+.+|+++||+|||+++.+++ ..-.++++....... .+..........++..++..+|+
T Consensus 43 ~dL~a~Ai~~AL~dAGl~p~~Vd-~vI~g~~~~~~~~~~------------------~~~~~~~g~~~~~~~~va~~lGl 103 (520)
T 4egv_A 43 VELATEAAKAALHDCGADADTVA-RAIDTVAGTRQFEIS------------------GPASAPLGVSSNYPRSVARNIGA 103 (520)
T ss_dssp HHHHHHHHHHHHHHTSSCHHHHH-HHCCEEEECCC--------------------------------CCHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHhCcCHHHcc-eEEEEEeeccccccc------------------chhhhhhccccCHHHHHHHHcCC
Confidence 46889999999999999887654 111133333221100 00011122334566788999999
Q ss_pred CC-CeeeecCCcchHHHHHHHHHHHHHcCCCCEEEEeecCCCcChHHHHHHhh---------------------------
Q 011989 210 QG-PNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCK--------------------------- 261 (473)
Q Consensus 210 ~G-p~~~v~~acasg~~Al~~A~~~I~~G~~d~vlv~g~d~~~~~~~~~~~~~--------------------------- 261 (473)
.+ +.+++..+|+|++.+|..|++.|++|++|+||++|+|++++.........
T Consensus 104 ~~~~~~~~~~~caSg~~av~~AA~aI~aG~advvlAgG~EsMS~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 183 (520)
T 4egv_A 104 DPAHAVLEVIGGQSPQHLATEFGGKIAAGENDVVLIFGSENTSTLRHFSKAENKPDHSETVDGQLEDRGYGYDGIFDEYT 183 (520)
T ss_dssp CCSEEEECCSSTTHHHHHHHHHHHHHHTTSCSEEEEEEEECCC----------------------------------CTT
T ss_pred CCceEEEecCCCHHHHHHHHHHHHHHHcCCCCEEEEEEEEeccccccccccccccCccccccccccccccccchhHHHHH
Confidence 87 67788999999999999999999999999999999999865322110000
Q ss_pred ----------------hhccccc------c---------------CCCCCCC--------------------CcCccCCC
Q 011989 262 ----------------SRALTTK------Y---------------NGTPQEA--------------------SRPFDCGR 284 (473)
Q Consensus 262 ----------------~~~~~~~------~---------------~~~~~~~--------------------~~pfd~~~ 284 (473)
....... + ...++.. +.|+-...
T Consensus 184 ~~~g~~~~~~~~~~~~s~~~a~~g~~~~~f~~eia~v~v~~~~~a~~np~a~~r~~~t~E~l~~l~p~~r~i~~p~~ta~ 263 (520)
T 4egv_A 184 IRHGLIGAPVQYGLLENARRARLGLSVADYRLAMAELFAPFSKVAAKNPYSSAPTERSVEELLTVTASNRMIVDPYPRLM 263 (520)
T ss_dssp GGGTCCSHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHCTTSSSCCCCCHHHHHSCCSSSCEEETTEEGGG
T ss_pred HHhCCCcHHHHHHHHHHHHHHHHccccchhhhheeEEEEecccccccCccccccCCCCHHHhcccCcccccccCCccccc
Confidence 0000000 0 0001100 11222223
Q ss_pred CceeeccceEEEEEccchHHHhcCCeEEEEEEEEEEecC--CCCCCCCCC-ChHHHHHHHHHHHHHcCCCCCCccEEEEc
Q 011989 285 DGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGD--AHHITQPHI-DGKGAILAMTRALKQSGLQSHQVDYVNAH 361 (473)
Q Consensus 285 ~G~~~geGaaavvL~~~~~A~~~g~~~~a~i~g~~~~~d--~~~~~~~~~-~~~~~~~a~~~al~~agl~~~dId~v~~h 361 (473)
|...++|||+|+||.+++.|+++|.+++++|.+++.... ......++. ...+...+++++|+++|++++|||++|+|
T Consensus 264 nas~isDGAAAvVL~S~e~A~~lGl~p~a~I~~~a~a~~~~~~~~~~~~~~~~~~~~~a~~~al~~agl~~~did~~E~~ 343 (520)
T 4egv_A 264 VARDQVNQGAALLMMSVESARKLGVPEEKWVYLRGHADMKEPKLLERADIGASPASVTAVNEALRVAGIGLDDVAAFDLY 343 (520)
T ss_dssp CC--CCCEEEEEEEEEHHHHHHHTCCGGGCEEEEEEEEEECCCGGGCSCTTCCHHHHHHHHHHHHHHTCCGGGEEEEEEC
T ss_pred ccCCCCcceEEEEEeeHHHHHHcCCCCceEEEEEEEeccCCcccccccccccChHHHHHHHHHHHHhCCCHHHCCEEEEe
Confidence 455589999999999999999999998888877765442 222223322 24678899999999999999999999999
Q ss_pred CCCCCCCCHHHHHHHHHHhhccc-CCCCceeeccccchhhhHHhHHHHHHHHHHHHHHhCccCCCCCCCCCCCCCCCC
Q 011989 362 ATSTPLGDTVEATAIRTVFSDHA-TSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLAIHHGVAPLTLNLAKPDPIFNDN 438 (473)
Q Consensus 362 gtgt~~~D~~E~~a~~~~~~~~~-~~~~~~v~s~k~~~Gh~~~AsG~~~li~~~~~l~~~~ipp~~~~~~~~~~~~~~ 438 (473)
... .++..+..+.++... ...++.++..+.++||+++++|+..+++++++||++..+..++ .+++.+++.
T Consensus 344 dAF-----~~~~l~~~~~lG~~~~~~~~~n~~Gg~~~~Ghp~~a~g~~~~~~~v~~lr~~~~~~~L~--~~~gg~~~~ 414 (520)
T 4egv_A 344 SCF-----PFPVFNICDGTGLATDDPRGLTLTGGLPFFGGLGNNYSMHGIAEAVNEMRDKPGQFALV--GANGGIASK 414 (520)
T ss_dssp CSS-----SHHHHHHHHHHCCCTTCTTCSCSSCCHHHHCSCSSSHHHHHHHHHHHHHHHSTTCEEEE--EEEETTTTE
T ss_pred CCc-----HHHHHHHHHHhCCCCCCCCCcCCCcccccCCChHHHHHHHHHHHHHHHHhcCCCCceEE--eCCCCeeee
Confidence 321 223333444444321 1235667777779999999999999999999999998887665 466666554
|
| >2h84_A Steely1; thiolase-fold, type III polyketide synthase, PKS, chalcone-S synthase superfamily, type I PKS; HET: P6G; 2.90A {Dictyostelium discoideum} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.3e-25 Score=225.23 Aligned_cols=325 Identities=14% Similarity=0.099 Sum_probs=212.9
Q ss_pred CceEEEecceecccCC-CHHHHHHHHHcCCCceeeCCccccccCCCCccccccccCCcccceeEEecCCCCCCCCCcccC
Q 011989 39 RRVVVTGIGMVTPLGC-GAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSKVAAVVPCGISSGEFNEDSW 117 (473)
Q Consensus 39 ~~v~ItG~g~~~p~g~-~~~~~~~~l~~G~s~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~~~~ 117 (473)
+++.|+|+|+..|... +.+++|+.+....+. +.+..+|....+. ..++..+.. ... ...||+.+|
T Consensus 12 ~~v~I~g~g~~~P~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~i~~-------~~Gi~~R~~--~~~---~~~~~~~~~ 77 (374)
T 2h84_A 12 NNSFVLGIGISVPGEPISQQSLKDSISNDFSD--KAETNEKVKRIFE-------QSQIKTRHL--VRD---YTKPENSIK 77 (374)
T ss_dssp CCCEEEEEEEECSSSCEEHHHHHHHHHHHSCS--CHHHHHHHHHHHH-------TTCCCEECC--SSC---TTSGGGCGG
T ss_pred CCeEEEEEEEeCCCcccCHHHHHHHHHHhhcc--ChHHHHHHHHHHH-------hCCcCccee--ecC---ccccccccc
Confidence 3689999999999875 789999887643210 0000011000000 001111100 000 012666665
Q ss_pred -CCchhhhcc-----CHHHHHHHHHHHHHHHHcCCCCCCCCCCCceeEEEecCCCChhhHHHHHHHHHHhccccCCCcch
Q 011989 118 -LNSKDHRSI-----ARFIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFI 191 (473)
Q Consensus 118 -~~~~~~~~~-----~~~~~la~~aa~~Al~dAgl~~~~~~~~~~~gvivg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (473)
.+.++...+ ++..+|+++|+++||++||+++++++ .|+++++.+ +.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~la~~Aa~~al~~ag~~~~~id-----~vi~~t~~~----------------------~~- 129 (374)
T 2h84_A 78 FRHLETITDVNNQFKKVVPDLAQQACLRALKDWGGDKGDIT-----HIVSVTSTG----------------------II- 129 (374)
T ss_dssp GGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCGGGCC-----EEEEEESSC----------------------CC-
T ss_pred cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHCC-----EEEEEeeCC----------------------CC-
Confidence 444444455 78899999999999999999888876 788887542 11
Q ss_pred hhhhhhHHHHHHHHhcCCCC--Ceeeec-CCcchHHHHHHHHHHHHHcCCCCEEEEeecCCCcChHHHHHHhhhhccccc
Q 011989 192 PRILINMASGHVSMKYGFQG--PNHAAV-TACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTK 268 (473)
Q Consensus 192 ~~~~~~~~a~~ia~~lgl~G--p~~~v~-~acasg~~Al~~A~~~I~~G~~d~vlv~g~d~~~~~~~~~~~~~~~~~~~~ 268 (473)
.+..+.+|+..||+++ |++.+. ++|+|++.||.+|+++|++|.++.|||+|+|.++...
T Consensus 130 ----~p~~a~~v~~~lGl~~~~~~~~v~~~aCss~~~al~~A~~~i~~g~~~~vLv~g~e~~s~~~-------------- 191 (374)
T 2h84_A 130 ----IPDVNFKLIDLLGLNKDVERVSLNLMGCLAGLSSLRTAASLAKASPRNRILVVCTEVCSLHF-------------- 191 (374)
T ss_dssp ----SSCHHHHHHHHHTCCTTCEEEEEESCGGGHHHHHHHHHHHHHTTCTTCEEEEEEEECCGGGC--------------
T ss_pred ----CCcHHHHHHHHcCcCCCCceEEecCCcCHHHHHHHHHHHHHHHcCCCCEEEEEEEEecchhh--------------
Confidence 1235779999999998 789996 8999999999999999999999999999999853211
Q ss_pred cCCCCCCCCcCccCC--CCceeeccceEEEEEccchHHHhcCCeEEEEEEEEEEec--CCC------------CC----C
Q 011989 269 YNGTPQEASRPFDCG--RDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSG--DAH------------HI----T 328 (473)
Q Consensus 269 ~~~~~~~~~~pfd~~--~~G~~~geGaaavvL~~~~~A~~~g~~~~a~i~g~~~~~--d~~------------~~----~ 328 (473)
..|.|.+ .+++++||||+|+||++.+.+..++ ++ ++.+.+... ++. +. .
T Consensus 192 --------~~~~dr~~~~~~~lfGDGA~A~vL~~~~~~~~~~--~~-~l~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~ 260 (374)
T 2h84_A 192 --------SNTDGGDQMVASSIFADGSAAYIIGCNPRIEETP--LY-EVMCSINRSFPNTENAMVWDLEKEGWNLGLDAS 260 (374)
T ss_dssp --------CCSSSHHHHHHHHHBCCEEEEEEEESSCCTTCCC--CE-EEEEEEEEECSSCTTSEEEEEETTEEEEEECTT
T ss_pred --------cCCCCHHHHhhhhhhccCcEEEEEecCCCcccCC--ce-eEEeeeeEEeCCCcccceeEEecCcEEEEeCch
Confidence 0112211 2478999999999999876543222 33 666655431 111 00 0
Q ss_pred CCCCChHHHHHHHHHHHHHcC------CCCCCccEEEEcCCCCCCCCHHHHHHHHHHhhcccCCCCceee-ccccchhhh
Q 011989 329 QPHIDGKGAILAMTRALKQSG------LQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFS-STKGAIGHL 401 (473)
Q Consensus 329 ~~~~~~~~~~~a~~~al~~ag------l~~~dId~v~~hgtgt~~~D~~E~~a~~~~~~~~~~~~~~~v~-s~k~~~Gh~ 401 (473)
.+......+.++++++|+++| ++++||||| +|+++++..|.++ +.++... .+++++ .+...+||+
T Consensus 261 v~~~~~~~~~~~i~~~L~~ag~~~~~~l~~~did~~-~H~~~~~i~d~~~-----~~lgl~~--~k~~~s~~~~~~~Gnt 332 (374)
T 2h84_A 261 IPIVIGSGIEAFVDTLLDKAKLQTSTAISAKDCEFL-IHTGGKSILMNIE-----NSLGIDP--KQTKNTWDVYHAYGNM 332 (374)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTSCSCCCSSSSEEE-ECCCCHHHHHHHH-----HHTTCCG--GGGHHHHHHHHHHCBC
T ss_pred HHHHHHHHHHHHHHHHHHhcCCccccCCChhhcCEe-ECCCCHHHHHHHH-----HHcCCCH--HHHHHHHHHHHHhCCc
Confidence 000112456788999999999 999999999 9999998766443 4455332 234432 445789999
Q ss_pred HHhHHHHHHHHHHHHHHhCccCCCCCCCCCCCCCCCCCCccccCCCCCCcEEEEeccccccceeeEEEeec
Q 011989 402 LGAAGAVEAIFAVLAIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPISAALSNSFGFGGTNASLLFTKC 472 (473)
Q Consensus 402 ~~AsG~~~li~~~~~l~~~~ipp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~g~gG~~~~~vl~~~ 472 (473)
.+|+-.+.|..++ +.+. +-..++..+||.|-+..+++|+..
T Consensus 333 ~sasi~~~L~~~~---~~~~---------------------------~Gd~vll~~~G~G~t~~~~ll~~~ 373 (374)
T 2h84_A 333 SSASVIFVMDHAR---KSKS---------------------------LPTYSISLAFGPGLAFEGCFLKNV 373 (374)
T ss_dssp TTHHHHHHHHHHH---TCSC---------------------------CCSEEEEEEEETTTEEEEEEEEEC
T ss_pred hhhHHHHHHHHHH---hhcC---------------------------CCCeEEEEEeccchhhhhhhheec
Confidence 9888776555443 2211 234667779999888889998865
|
| >3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana} | Back alignment and structure |
|---|
Probab=99.93 E-value=6.7e-26 Score=254.35 Aligned_cols=271 Identities=12% Similarity=0.063 Sum_probs=189.7
Q ss_pred hhccCHHHHHHHHHHHHHHHHcCCCCCCCCCCCceeEEEecCCCChhhHHHHHHHHHHhccccCCCcchhhhhhhHHHHH
Q 011989 123 HRSIARFIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGH 202 (473)
Q Consensus 123 ~~~~~~~~~la~~aa~~Al~dAgl~~~~~~~~~~~gvivg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 202 (473)
.+.++...+|+++|+++||+|||+++++++ .|+++++.+. ..+..+..
T Consensus 683 ~~~~~~~~~la~~Aa~~AL~~agl~~~dId-----~ii~~t~~~~---------------------------~~p~~a~~ 730 (979)
T 3tsy_A 683 EIITAEVPKLGKEAALKALKEWGQPKSKIT-----HLVFCTTSGV---------------------------EMPGADYK 730 (979)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCSCGGGCC-----EEEEEESSCC---------------------------CSSCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCHHHCC-----EEEEEeeCCC---------------------------CCCcHHHH
Confidence 334445677999999999999999988887 7888774311 12356789
Q ss_pred HHHhcCCCCC---eeeecCCcchHHHHHHHHHHHHHcCCCCEEEEeecCCCcChHHHHHHhhhhccccccCCCCCCCCcC
Q 011989 203 VSMKYGFQGP---NHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRP 279 (473)
Q Consensus 203 ia~~lgl~Gp---~~~v~~acasg~~Al~~A~~~I~~G~~d~vlv~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 279 (473)
|+..||++++ ++.++++|++++.||..|.++|++|.++.|||+|+|.+..... ......
T Consensus 731 v~~~lGl~~~~~~~~~v~~aCsg~~~Al~~A~~~i~sG~~~~vLvvg~e~~~~~~~------------------~~~~~~ 792 (979)
T 3tsy_A 731 LANLLGLEPSVRRVMLYHQGCYAGGTVLRTAKDLAENNAGARVLVVCSEITVVTFR------------------GPSEDA 792 (979)
T ss_dssp HHHHHTCCTTCEEEEEESCCTTHHHHHHHHHHHHHHTSTTCEEEEEEEECTTTTCC------------------CCCSSC
T ss_pred HHHHcCCCcccEEEeeeccccHhHHHHHHHHHHHHHhCCCCEEEEEEEEecchhee------------------CCCccC
Confidence 9999999874 4899999999999999999999999999999999997322110 011112
Q ss_pred ccCCCCceeeccceEEEEEccchHHHhcCCeEEEEEEEEEEecCCCCCCCCCCC----------------hHHHHHHHHH
Q 011989 280 FDCGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHID----------------GKGAILAMTR 343 (473)
Q Consensus 280 fd~~~~G~~~geGaaavvL~~~~~A~~~g~~~~a~i~g~~~~~d~~~~~~~~~~----------------~~~~~~a~~~ 343 (473)
++...+++++||||+|+||++.+.+..++..++....++....+..+...+... .....+++++
T Consensus 793 ~~~~~~~~lfGDGA~A~vL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 872 (979)
T 3tsy_A 793 LDSLVGQALFGDGSAAVIVGSDPDISIERPLFQLVSAAQTFIPNSAGAIAGNLREVGLTFHLWPNVPTLISENVEKCLTQ 872 (979)
T ss_dssp HHHHHHHHHBCCEEEEEEEESSCCSSSCCCCEEEEEEEEEECTTCTTSEEEEEETTEEEEEECTTHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhhccCceEEEEEecCCCccccCcceEEEeeeeEEecCchhheEEEEecCceEEEEchHHHHHHHHHHHHHHHH
Confidence 222234678999999999998777655666677766676665554432221111 1235789999
Q ss_pred HHHHcCCCCCCccEEEEcCCCCCCCCHHHHHHHHHHhhcccCCCCceee-ccccchhhhHHhHHHHHHHHHHHHHHhCcc
Q 011989 344 ALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFS-STKGAIGHLLGAAGAVEAIFAVLAIHHGVA 422 (473)
Q Consensus 344 al~~agl~~~dId~v~~hgtgt~~~D~~E~~a~~~~~~~~~~~~~~~v~-s~k~~~Gh~~~AsG~~~li~~~~~l~~~~i 422 (473)
+|+++|++++||||+++|..+++..|.++ +.++... .++..+ ..-..+||+.+||=.+.|..+...++.|..
T Consensus 873 al~~agl~~~did~~~~Hq~~~~i~~~~~-----~~lgl~~--~k~~~~~~~l~~~GNtssasi~~~L~~~~~~~~~G~~ 945 (979)
T 3tsy_A 873 AFDPLGISDWNSLFWIAHPGGPAILDAVE-----AKLNLDK--KKLEATRHVLSEYGNMSSACVLFILDEMRKKSLKGER 945 (979)
T ss_dssp HHGGGTCCCGGGSEEEECCSCHHHHHHHH-----HHHTCCT--TTTHHHHHHHHHHCBCTTHHHHHHHHHHHHHHHHTTC
T ss_pred HHhhcCCCCcccceEEECCCChHHHHHHH-----HHcCCCh--HHHHHHHHHHHHcCCcchhhHHHHHHHHHhhhccccc
Confidence 99999999999999999988877655443 3344322 122222 124578999999988888776665544321
Q ss_pred CCCCCCCCCCCCCCCCCCccccCCCCCCcEEEEeccccccceeeEEEee
Q 011989 423 PLTLNLAKPDPIFNDNFMPLTASKDMPISAALSNSFGFGGTNASLLFTK 471 (473)
Q Consensus 423 pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~g~gG~~~~~vl~~ 471 (473)
+. ........+..+||.|-+..+++|+-
T Consensus 946 -----------------v~----~g~~~~~~ll~~~G~G~t~~~~~l~~ 973 (979)
T 3tsy_A 946 -----------------AT----TGEGLDWGVLFGFGPGLTIETVVLHS 973 (979)
T ss_dssp -----------------SB----TTTTCSEEEEEEECGGGEEEEEEEEC
T ss_pred -----------------cc----CCCCcceeEEEEeCCchHHHHHHHHh
Confidence 10 11234566778999988888888863
|
| >1ted_A PKS18; thiolase fold, substrate binding tunnel, transferase; HET: MYR; 2.25A {Mycobacterium tuberculosis} SCOP: c.95.1.2 PDB: 1tee_A | Back alignment and structure |
|---|
Probab=99.91 E-value=3.5e-24 Score=215.92 Aligned_cols=255 Identities=16% Similarity=0.167 Sum_probs=180.3
Q ss_pred CHHHHHHHHHHHHHHHHcCCCCCCCCCCCceeEEEecCCCChhhHHHHHHHHHHhccccCCCcchhhhhhhHHHHHHHHh
Q 011989 127 ARFIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMK 206 (473)
Q Consensus 127 ~~~~~la~~aa~~Al~dAgl~~~~~~~~~~~gvivg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~ 206 (473)
....+|+++|+++||+++|+++++++ .|++++..+ +. .+..+.+|+..
T Consensus 111 ~~~~~la~~Aa~~aL~~agl~~~~Id-----~vi~~t~~~----------------------~~-----~p~~a~~v~~~ 158 (393)
T 1ted_A 111 EHAVPLAVDVSKRALAGLPYRAAEIG-----LLVLATSTG----------------------FI-----APGVDVAIVKE 158 (393)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCGGGEE-----EEEEEESSC----------------------CC-----SSCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHcCCCHHHCC-----EEEEEEeCC----------------------Cc-----cChHHHHHHHH
Confidence 35679999999999999999776665 667776432 11 12356789999
Q ss_pred cCCCCC--eeee-cCCcchHHHHHHHHHHHHHcCCCCEEEEeecCCCcChHHHHHHhhhhccccccCCCCCCCCcCccCC
Q 011989 207 YGFQGP--NHAA-VTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCG 283 (473)
Q Consensus 207 lgl~Gp--~~~v-~~acasg~~Al~~A~~~I~~G~~d~vlv~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pfd~~ 283 (473)
||++++ .+.+ .++|+|++.||..|.++|++|.+|.|||+|+|.++.... |+.+
T Consensus 159 lGl~~~~~~~~v~~~aCas~~~Al~~A~~~i~~G~~~~vLv~g~e~~s~~~~------------------------~~~~ 214 (393)
T 1ted_A 159 LGLSPSISRVVVNFMGCAAAMNALGTATNYVRAHPAMKALVVCIELCSVNAV------------------------FADD 214 (393)
T ss_dssp HTCCTTCEEEEEESCGGGHHHHHHHHHHHHHHHSTTCEEEEEEEEECGGGCC------------------------CCSS
T ss_pred cCcCCCcceeEeccchhHHHHHHHHHHHHHHHcCCCCEEEEEEEEeccccCC------------------------CCCC
Confidence 999985 5777 899999999999999999999999999999997542110 2233
Q ss_pred CC----ceeeccceEEEEEccchHHHhcCCeEEEEEEEEEEe--cCCCCCC-------------C---CCCChHHHHHHH
Q 011989 284 RD----GFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMS--GDAHHIT-------------Q---PHIDGKGAILAM 341 (473)
Q Consensus 284 ~~----G~~~geGaaavvL~~~~~A~~~g~~~~a~i~g~~~~--~d~~~~~-------------~---~~~~~~~~~~a~ 341 (473)
++ ++++||||+|+||++.+.+..++. .+++|.+++.. .|+.... . +......+.+++
T Consensus 215 r~~~~~~~lfGDGA~A~vL~~~~~~~~~~~-~~~~i~~~~~~~~~d~~~~~~~~~~~~g~~~~~g~~v~~~~~~~~~~~i 293 (393)
T 1ted_A 215 INDVVIHSLFGDGCAALVIGASQVQEKLEP-GKVVVRSSFSQLLDNTEDGIVLGVNHNGITCELSENLPGYIFSGVAPVV 293 (393)
T ss_dssp HHHHHHHHHBCEEEEEEEEEEECTTSCCCT-TCEEEEEEEEEECTTCTTSEEEEEETTEEEEEECTTHHHHHHHHHHHHH
T ss_pred HHHhhhhhhhcCccEEEEEecCCCccccCc-ceeeeeccceEEcCCchhhccceecCCCeEEecCchHHHHHHHHHHHHH
Confidence 33 789999999999997764422232 44677877544 5542210 0 111224567889
Q ss_pred HHHHHHcCCCCCCccEEEEcCCCCCCCCHHHHHHHHHHhhcccCCCCceee-ccccchhhhHHhHHHHHHHHHHHHHHhC
Q 011989 342 TRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFS-STKGAIGHLLGAAGAVEAIFAVLAIHHG 420 (473)
Q Consensus 342 ~~al~~agl~~~dId~v~~hgtgt~~~D~~E~~a~~~~~~~~~~~~~~~v~-s~k~~~Gh~~~AsG~~~li~~~~~l~~~ 420 (473)
+++|+++|++++|||||++|+++++..|.++ +.++... .++.++ .....+||+.+|+-.+.|..+ ++.+
T Consensus 294 ~~aL~~agl~~~dId~~~~H~~~~~i~d~~~-----~~lgl~~--~k~~~s~~~~~~~GNt~sAsi~~~L~~~---~~~g 363 (393)
T 1ted_A 294 TEMLWDNGLQISDIDLWAIHPGGPKIIEQSV-----RSLGISA--ELAAQSWDVLARFGNMLSVSLIFVLETM---VQQA 363 (393)
T ss_dssp HHHHHHTTCCGGGCSCEEECCSCHHHHHHHH-----HHHTCCG--GGGHHHHHHHHHHCBCTHHHHHHHHHHH---HHSC
T ss_pred HHHHHHcCCCHhHCCEEEECCCcHHHHHHHH-----HHcCCCH--HHHHHHHHHHHhhCCchHhHHHHHHHHH---HhcC
Confidence 9999999999999999999999998866544 3344322 123321 356789999988866644333 2332
Q ss_pred ccCCCCCCCCCCCCCCCCCCccccCCCCCCcEEEEeccccccceeeEEEeec
Q 011989 421 VAPLTLNLAKPDPIFNDNFMPLTASKDMPISAALSNSFGFGGTNASLLFTKC 472 (473)
Q Consensus 421 ~ipp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~g~gG~~~~~vl~~~ 472 (473)
.+ .++-+.++..+||.|.+..+++|+..
T Consensus 364 ~~------------------------~~~Gd~vll~~~G~G~t~~~~~l~~~ 391 (393)
T 1ted_A 364 ES------------------------AKAISTGVAFAFGPGVTVEGMLFDII 391 (393)
T ss_dssp SS------------------------SSSSEEEEEEEEETTTEEEEEEEEEC
T ss_pred cc------------------------CCCCCeEEEEEeccchhhhhhheeec
Confidence 21 01245788889999999999999754
|
| >3s21_A 3-oxoacyl-[ACP] synthase III; non-decarboxylative claisen condensation reaction, transfera; HET: CER; 1.70A {Xanthomonas campestris PV} PDB: 3s23_A* 3row_A 3s1z_A 3s20_A* 3fk5_A | Back alignment and structure |
|---|
Probab=99.90 E-value=7.4e-23 Score=202.60 Aligned_cols=261 Identities=18% Similarity=0.105 Sum_probs=180.7
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCCCCCCceeEEEecCCCChhhHHHHHHHHHHhccccCCCcchhhhhhhHHHHHHHHhc
Q 011989 128 RFIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKY 207 (473)
Q Consensus 128 ~~~~la~~aa~~Al~dAgl~~~~~~~~~~~gvivg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~l 207 (473)
....|+.+|+++||+++|+++++++ .|++++...+ ...+..+.+++..|
T Consensus 67 ~~~~La~~Aa~~al~~ag~~~~~Id-----~vi~~t~~~~--------------------------~~~p~~a~~v~~~l 115 (345)
T 3s21_A 67 QASDAATQAARKALIDANIGIEKIG-----LLINTSVSRD--------------------------YLEPSTASIVSGNL 115 (345)
T ss_dssp CHHHHHHHHHHHHHHHHTCCGGGCC-----EEEECCSCCS--------------------------CSSSCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCCHHHCC-----EEEEEeCCCC--------------------------CCCChHHHHHHHHh
Confidence 3578999999999999999988887 7888875421 11124577899999
Q ss_pred CCC--CCeeeecCCcchHHHHHHHHHHHHHcCCCCEEEEeecCCCcChHHHHHHhhhhccccccCCCCCCCCcCccCCCC
Q 011989 208 GFQ--GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRD 285 (473)
Q Consensus 208 gl~--Gp~~~v~~acasg~~Al~~A~~~I~~G~~d~vlv~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pfd~~~~ 285 (473)
|++ .|++.++.+|+|++.||..|+++|++|.++.|||+|+|.++..... ...+... +...+++|+....
T Consensus 116 Gl~~~~~~~~v~~aC~s~~~al~~A~~~i~~g~~~~vLvvg~e~~s~~~~~---~~~~~~~------~~~~~~~f~~~~~ 186 (345)
T 3s21_A 116 GVSDHCMTFDVANACLAFINGMDIAARMLERGEIDYALVVDGETANLVYEK---TLERMTS------PDVTEEEFRNELA 186 (345)
T ss_dssp TCCTTCEEEECCCGGGHHHHHHHHHHHHHHHTSCSEEEEEEEECCHHHHHH---HHHHHTC------TTCCHHHHHHHHG
T ss_pred CCCCCceEEeECCcCHHHHHHHHHHHHHHHCCCCCEEEEEEEcccchhhcc---ccccccC------Cccchhhhhhhcc
Confidence 996 6999999999999999999999999999999999999986544221 1112222 2346778888888
Q ss_pred ceeeccceEEEEEccchHHHhcCCeEEEEEEEEEEecCCCCCC--CC-----CCCh--------HHHHHHHHHHHHHcCC
Q 011989 286 GFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHIT--QP-----HIDG--------KGAILAMTRALKQSGL 350 (473)
Q Consensus 286 G~~~geGaaavvL~~~~~A~~~g~~~~a~i~g~~~~~d~~~~~--~~-----~~~~--------~~~~~a~~~al~~agl 350 (473)
++++||||+|+||++.+... .+. .|.+.....++.+.. .+ ...+ ....++++++|+++|+
T Consensus 187 ~~~~GdGA~A~vl~~~~~~~-~~~----~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~i~~~l~~~gl 261 (345)
T 3s21_A 187 ALTLGCGAAAMVMARSELVP-DAP----RYKGGVTRSATEWNKLCRGNLDRMVTDTRLLLIEGIKLAQKTFVAAKQVLGW 261 (345)
T ss_dssp GGGBCCEEEEEEEEEGGGST-TSC----EEEEEEEEECGGGTTC-----------CHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred ceeeccceeEEEEecCCCCC-CCc----ceeeeccccCcchhhhccccCcceEEcHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 99999999999999765321 112 345555444432211 11 1111 1234677899999999
Q ss_pred CCCCccEEEEcCCCCCCCCHHHHHHHHHHhhcccCCCCceeeccccchhhhHHhHHHHHHHHHHHHHHhCccCCCCCCCC
Q 011989 351 QSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLAIHHGVAPLTLNLAK 430 (473)
Q Consensus 351 ~~~dId~v~~hgtgt~~~D~~E~~a~~~~~~~~~~~~~~~v~s~k~~~Gh~~~AsG~~~li~~~~~l~~~~ipp~~~~~~ 430 (473)
+++|||++.+|..+... ...+.+.++... .+++ ..-..+||+.+|+-.+.|..++ +.+.+.
T Consensus 262 ~~~did~~v~Hq~~~~i-----~~~~~~~lgl~~--ek~~--~~l~~~GNt~sasi~~~L~~~~---~~g~~~------- 322 (345)
T 3s21_A 262 AVEELDQFVIHQVSRPH-----TAAFVKSFGIDP--AKVM--TIFGEHGNIGPASVPIVLSKLK---ELGRLK------- 322 (345)
T ss_dssp CGGGCSEEEECCSCHHH-----HHHHHHHHTCCG--GGBC--CCHHHHCBCGGGHHHHHHHHHH---HHTCCC-------
T ss_pred CHHHCCEEEeCCCCHHH-----HHHHHHHcCcCH--HHce--eeHhhcCchHHHHHHHHHHHHH---HcCCCC-------
Confidence 99999999999655443 234444455332 1222 2335789999998777665543 333321
Q ss_pred CCCCCCCCCCccccCCCCCCcEEEEeccccccceeeEEEe
Q 011989 431 PDPIFNDNFMPLTASKDMPISAALSNSFGFGGTNASLLFT 470 (473)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~~~~~l~~s~g~gG~~~~~vl~ 470 (473)
+-..++..+||.|-+..+++|+
T Consensus 323 ------------------~Gd~vll~~~G~G~t~~~~~l~ 344 (345)
T 3s21_A 323 ------------------KGDRIALLGIGSGLNCSMAEVV 344 (345)
T ss_dssp ------------------TTCEEEEEEEETTTEEEEEEEE
T ss_pred ------------------CCCEEEEEEEChhhhheEEEEE
Confidence 1245677799998888888875
|
| >4dfe_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; ssgcid, seattle structural genomics center for infectious DI transferase; 2.35A {Burkholderia xenovorans} | Back alignment and structure |
|---|
Probab=99.89 E-value=9.6e-23 Score=200.87 Aligned_cols=294 Identities=18% Similarity=0.243 Sum_probs=194.0
Q ss_pred ceEEEecceecccC-CCHHHHHHHHHcCCCceeeCCccccccCCCCccccccccCCcccceeEEecCCCCCCCCCcccCC
Q 011989 40 RVVVTGIGMVTPLG-CGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSKVAAVVPCGISSGEFNEDSWL 118 (473)
Q Consensus 40 ~v~ItG~g~~~p~g-~~~~~~~~~l~~G~s~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~~~~~ 118 (473)
++.|+|+|+..|.. .+.+++|+.+... ++. .+ .+|-. . ...+..+ .+.
T Consensus 11 ~v~I~g~g~~lP~~~v~~~~l~~~l~~~--~~~-~~-~~~i~---------~-rtgi~~r-----------------~~~ 59 (333)
T 4dfe_A 11 YSRVLGTGSYLPPNRVTNQDLAKRLAEQ--GIE-TS-DEWIV---------A-RTGIHAR-----------------YFA 59 (333)
T ss_dssp EEEEEEEEEECCSEEEEHHHHHHHHC-----CC-CC-HHHHH---------H-HHCCSEE-----------------EEC
T ss_pred ceEEEEEEEECCCcEEcHHHHHHHhccc--cCC-CC-HHHhH---------H-hcCceEE-----------------EEc
Confidence 79999999999986 4889999887441 110 00 11100 0 0011100 000
Q ss_pred CchhhhccCHHHHHHHHHHHHHHHHcCCCCCCCCCCCceeEEEecCCCChhhHHHHHHHHHHhccccCCCcchhhhhhhH
Q 011989 119 NSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINM 198 (473)
Q Consensus 119 ~~~~~~~~~~~~~la~~aa~~Al~dAgl~~~~~~~~~~~gvivg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (473)
.+ -.+...|+.+|+++||+++|+++++++ .|++++..+.. ..+.
T Consensus 60 ~~-----~~~~~~la~~Aa~~al~~ag~~~~~Id-----~vi~~t~~~~~--------------------------~~p~ 103 (333)
T 4dfe_A 60 EP-----DVTTSDLAFIASQRAIEAADIDPQSID-----LIIVATSTPDF--------------------------VFPS 103 (333)
T ss_dssp CT-----TCCHHHHHHHHHHHHHHHHTCCGGGCC-----EEEEECSSCSS--------------------------SBSC
T ss_pred CC-----CCCHHHHHHHHHHHHHHHcCCCHHHCC-----EEEEEeCCCCC--------------------------CCCc
Confidence 01 124678999999999999999988887 88998865321 1234
Q ss_pred HHHHHHHhcCC--CCCeeeecCCcchHHHHHHHHHHHHHcCCCCEEEEeecCCCcChHHHHHHhhhhccccccCCCCCCC
Q 011989 199 ASGHVSMKYGF--QGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEA 276 (473)
Q Consensus 199 ~a~~ia~~lgl--~Gp~~~v~~acasg~~Al~~A~~~I~~G~~d~vlv~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (473)
.+.+++..||+ +.|+++++.+|+|++.||..|+++|++|.++.+||+|+|.++....
T Consensus 104 ~a~~v~~~lgl~~~~~~~~v~~~C~s~~~al~~A~~~i~~g~~~~vLvvg~e~~s~~~~--------------------- 162 (333)
T 4dfe_A 104 TACLLQNKLGIRNHGAAFDVQAVCSGFAYAVATADSFIRSGQHRTALVIGAETFSRILD--------------------- 162 (333)
T ss_dssp HHHHHHHHTTCCSCCEEEEEECGGGHHHHHHHHHHHHHHTTSCSEEEEEEEEEGGGGCC---------------------
T ss_pred HHHHHHHHhCCCCCCcEEEeCcccHHHHHHHHHHHHHHHcCCCCEEEEEEeeccccccC---------------------
Confidence 57789999999 5699999999999999999999999999999999999998533211
Q ss_pred CcCccCCCCceeeccceEEEEEccchHHHhcCCeEEEEEEEEEEecCCCC---CCCC--------------CCCh-----
Q 011989 277 SRPFDCGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHH---ITQP--------------HIDG----- 334 (473)
Q Consensus 277 ~~pfd~~~~G~~~geGaaavvL~~~~~A~~~g~~~~a~i~g~~~~~d~~~---~~~~--------------~~~~----- 334 (473)
++.+..++++||||+|+||++.+. .. |.++...+++.. ...| ...+
T Consensus 163 ---~~d~~~~~lfGDGA~A~vl~~~~~-----~~----i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~ 230 (333)
T 4dfe_A 163 ---FKDRTTCVLFGDGAGAVILQASDE-----PG----VLASALHADGSHSNILCTPGNVNGGVVSGSAFLHMDGQAVFK 230 (333)
T ss_dssp ---TTCTTTTTTBCEEEEEEEEEEESS-----CS----EEEEEEEECGGGGGGEEBCEEEETTEEEECCSCEECHHHHHH
T ss_pred ---cccccceeeeccccEEEEEEEcCC-----CC----eEEEEEEEccCCcCeEEECCCCCCcccccCcceeeccHHHHH
Confidence 223346788999999999997551 12 223333333321 0000 0111
Q ss_pred ---HHHHHHHHHHHHHcCCCCCCccEEEEcCCCCCCCCHHHHHHHHHHhhcccCCCCceeeccccchhhhHHhHHHHHHH
Q 011989 335 ---KGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAI 411 (473)
Q Consensus 335 ---~~~~~a~~~al~~agl~~~dId~v~~hgtgt~~~D~~E~~a~~~~~~~~~~~~~~~v~s~k~~~Gh~~~AsG~~~li 411 (473)
..+.++++++|+++|++++|||++.+|..+.+. ..++.+.++... .++.. ....+||+.+|+=.+.|.
T Consensus 231 ~~~~~~~~~i~~~l~~~gl~~~did~~~~Hq~~~~i-----~~~~~~~lgl~~--~~~~~--~l~~~GNt~sasi~~~L~ 301 (333)
T 4dfe_A 231 LAVNVLEKVAVEALEKANLSAEQIDWLIPHQANIRI-----MQSTCRKLGLPQ--ERMIV--TVGEHGNTSAASIPLALD 301 (333)
T ss_dssp HHHHHHHHHHHHHHHHTTCCGGGCSEEEECCSCHHH-----HHHHHHHTTCCG--GGBCC--CHHHHCBCGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHCCEEEEcCCCHHH-----HHHHHHHhCCCH--HHhhh--hHHhcCchHHHHHHHHHH
Confidence 345678999999999999999999999766543 234444454322 12222 345789999998666554
Q ss_pred HHHHHHHhCccCCCCCCCCCCCCCCCCCCccccCCCCCCcEEEEeccccccceeeEEEe
Q 011989 412 FAVLAIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPISAALSNSFGFGGTNASLLFT 470 (473)
Q Consensus 412 ~~~~~l~~~~ipp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~g~gG~~~~~vl~ 470 (473)
.+ ++.+.+ .+-..++..+||.|-+..++||+
T Consensus 302 ~~---~~~g~~-------------------------~~Gd~vll~~~G~G~t~~~~ll~ 332 (333)
T 4dfe_A 302 VA---VRDGRI-------------------------KRGQNVLIEGVGGGFTWGASVIR 332 (333)
T ss_dssp HH---HHTTCS-------------------------CTTCEEEEEEEETTTEEEEEEEE
T ss_pred HH---HHcCCC-------------------------CCCCEEEEEEEchhheeEEEEEE
Confidence 33 344332 12245666789999898888886
|
| >3led_A 3-oxoacyl-acyl carrier protein synthase III; structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.45A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.8e-19 Score=180.51 Aligned_cols=249 Identities=16% Similarity=0.151 Sum_probs=165.0
Q ss_pred CHHHHHHHHHHHHHHHHcCCCCCCCCCCCceeEEEecCCCChhhHHHHHHHHHHhccccCCCcchhhhhhhHHHHHHHHh
Q 011989 127 ARFIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMK 206 (473)
Q Consensus 127 ~~~~~la~~aa~~Al~dAgl~~~~~~~~~~~gvivg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~ 206 (473)
.....|+.+|+++||+++|+++++++ .|+++++..+. ..+..+.+|+..
T Consensus 115 ~~~~~La~~Aa~~AL~~agi~~~dId-----~vi~~t~t~~~--------------------------~~p~~a~~v~~~ 163 (392)
T 3led_A 115 SILAEMAVTAAEQAIERWGKPRERIG-----AVLCACSNMQR--------------------------AYPAMAIEVQNA 163 (392)
T ss_dssp CHHHHHHHHHHHHHHHHHCSCGGGEE-----EEEEESSCCSC--------------------------SBSCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHcCCCHHHCC-----EEEEEecCCCC--------------------------CccHHHHHHHHH
Confidence 34679999999999999999887776 78888754221 122467789999
Q ss_pred cCCCCCeeeecCCcchHHHHHHHHHHHHHcCCCCEEEEeecCCCcChHHHHHHhhhhccccccCCCCCCCCcCccCCCCc
Q 011989 207 YGFQGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDG 286 (473)
Q Consensus 207 lgl~Gp~~~v~~acasg~~Al~~A~~~I~~G~~d~vlv~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pfd~~~~G 286 (473)
||++.+++.|+.+|++++.||..|.++|++|.++.|||+|+|.++.... +..+...
T Consensus 164 LGl~~~~~dv~~aC~g~~~aL~~A~~~i~~g~~~~vLvvg~E~~S~~~d------------------------~~dr~t~ 219 (392)
T 3led_A 164 LGLGGFAFDMNVACSSATFGLKTAADFVGGGSVDAVLMVNPEICSGHLN------------------------FRDRDSH 219 (392)
T ss_dssp TTCCSEEEEEECGGGHHHHHHHHHHHHHHTTSCSEEEEEEEEEGGGGCC------------------------TTCTTTT
T ss_pred hCCCCeEEEECCccHHHHHHHHHHHHHHHCCCCCEEEEEeehhcCCcCC------------------------cCcccCC
Confidence 9998899999999999999999999999999999999999997432110 1112346
Q ss_pred eeeccceEEEEEccchHHHhcCCeEEEEEEEEEEecCCCC-C------C---CC----------CCCh--------HHHH
Q 011989 287 FVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHH-I------T---QP----------HIDG--------KGAI 338 (473)
Q Consensus 287 ~~~geGaaavvL~~~~~A~~~g~~~~a~i~g~~~~~d~~~-~------~---~~----------~~~~--------~~~~ 338 (473)
+++||||+|+||++.+.. .+ ...|.+....+++.. + . .+ ...+ ....
T Consensus 220 ~lFGDGA~A~vl~~~~~~--~~---~~~i~~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~v~~~a~~~~~ 294 (392)
T 3led_A 220 FIFGDVATAAIVERADDA--QG---GWSILGTKLKTQFSNNIRNNAGFLNRAWPEGRDKADKLFVQQGRKVFKEVVPLVS 294 (392)
T ss_dssp TTBCEEEEEEEEEEGGGC--CS---SEEEEEEEEEECCCSSEEBCCSGGGGGSGGGTTSGGGSCEECHHHHHHHHHHHHH
T ss_pred cccccccEEEEEEecCCC--CC---CCeEEEEEEEEccccccccCCCcccCCCccccccccceEEechHHHHHHHHHHHH
Confidence 889999999999875431 01 123455444433221 0 0 00 0011 1234
Q ss_pred HHHHHHHHHcCCCCCCccEEEEcCCCCCCCCHHHHHHHHHHhhcccCCCCceeeccccchhhhHHhHHHHHHHHHHHHHH
Q 011989 339 LAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLAIH 418 (473)
Q Consensus 339 ~a~~~al~~agl~~~dId~v~~hgtgt~~~D~~E~~a~~~~~~~~~~~~~~~v~s~k~~~Gh~~~AsG~~~li~~~~~l~ 418 (473)
.+++++|+++|++++|||++.+| +.|-.+-....+++++......+.+ .+-..+||+.+|+=.+.|-. ++
T Consensus 295 ~~i~~~L~~~gl~~~dId~~v~H----qan~~i~~~~~~~llgl~~~~~k~~--~~l~~~GNtssAsipl~L~~----~~ 364 (392)
T 3led_A 295 EMIIEHAREIGIDPHGLKRMWLH----QANINMNEIIGRKVLGRDPTRDENV--IILDDYANTSSAGSIIAFHK----HQ 364 (392)
T ss_dssp HHHHHHHHHTTCCGGGCSEEEEC----SSCHHHHHHHHHHHHTSCCCTTTBC--CCHHHHCBCGGGHHHHHHHH----CC
T ss_pred HHHHHHHHHcCCCHHHCcEEEEc----CCCHHHHHHHHHHhcCCCCCHHHHH--HHHhhhCccHHHHHHHHHHH----Hh
Confidence 57889999999999999999999 4433332222333334221111222 23357899988875554432 11
Q ss_pred hCccCCCCCCCCCCCCCCCCCCccccCCCCCCcEEEEeccccccceeeEEEee
Q 011989 419 HGVAPLTLNLAKPDPIFNDNFMPLTASKDMPISAALSNSFGFGGTNASLLFTK 471 (473)
Q Consensus 419 ~~~ipp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~g~gG~~~~~vl~~ 471 (473)
+.+ .+-..++..+||.|-+..+++|+.
T Consensus 365 -~~~-------------------------~~Gd~vll~gfG~G~t~~~~ll~~ 391 (392)
T 3led_A 365 -DDM-------------------------AQGDLGLICSFGAGYSAGTVFVQK 391 (392)
T ss_dssp -TTC-------------------------CTTCEEEEEEEETTTEEEEEEEEE
T ss_pred -CCC-------------------------CCCCEEEEEEEChhhEeEEEEEEE
Confidence 111 123467777999999999999875
|
| >3gwa_A 3-oxoacyl-(acyl-carrier-protein) synthase III; structural genomics, synthetase; 1.60A {Burkholderia pseudomallei} PDB: 3gwe_A | Back alignment and structure |
|---|
Probab=99.83 E-value=8.1e-20 Score=181.86 Aligned_cols=301 Identities=11% Similarity=0.056 Sum_probs=187.2
Q ss_pred CCCCCCCCCceEEEecceecccCC-CHHHHHHHHHcCCCceeeCCccccccCCCCccccccccCCcccceeEEecCCCCC
Q 011989 31 DPPPLSPLRRVVVTGIGMVTPLGC-GAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSKVAAVVPCGISS 109 (473)
Q Consensus 31 ~~~~~~~~~~v~ItG~g~~~p~g~-~~~~~~~~l~~G~s~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (473)
+..|.++.+.+.|+|+|...|.-. +.+++.+.+. +. + .+|- .. ..++..
T Consensus 21 ~~~~~~~~~~v~I~gig~~lP~~~v~n~~l~~~~~-~~------~-~~~i---------~~-~tGI~~------------ 70 (365)
T 3gwa_A 21 SMTPAAHPPRAAIADIAGHLPEQVLTNDVLAQLYP-DW------P-AEKI---------LA-KTGIRE------------ 70 (365)
T ss_dssp --------CEEEEEEEEEECCSEEEEHHHHHHHCT-TC------C-HHHH---------HH-HHCCCE------------
T ss_pred ccCccceeccEEEEEEEEeCCCcEEcHHHHHHHcc-CC------C-HHHH---------HH-hcCccE------------
Confidence 335556678899999999999854 7777766541 11 1 1110 00 001111
Q ss_pred CCCCcccCCCchhhhccCHHHHHHHHHHHHHHHHcCCCCCCCCCCCceeEEEecCCCChhhHHHHHHHHHHhccccCCCc
Q 011989 110 GEFNEDSWLNSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPF 189 (473)
Q Consensus 110 ~~fd~~~~~~~~~~~~~~~~~~la~~aa~~Al~dAgl~~~~~~~~~~~gvivg~~~g~~~~~~~~~~~~~~~~~~~~~~~ 189 (473)
..+..+ -.....|+.+|+++||+++|+++++++ .|++++..++
T Consensus 71 -----R~~a~~-----~~~~~~La~~Aa~~aL~~ag~~~~~Id-----~vi~~t~~~~---------------------- 113 (365)
T 3gwa_A 71 -----RRIAAP-----RETAADLAYEAARKLFAQGAVGADQVD-----FVILCTQAPD---------------------- 113 (365)
T ss_dssp -----EEECCT-----TCCHHHHHHHHHHHHHHTTSCCGGGCC-----EEEEEESSCS----------------------
T ss_pred -----EEECCC-----CCCHHHHHHHHHHHHHHHcCCCHHHCC-----EEEEEeCCCC----------------------
Confidence 111111 123578999999999999999988887 8888875422
Q ss_pred chhhhhhhHHHHHHHHhcCCC--CCeeeecCCcchHHHHHHHHHHHHHcCCCCEEEEeecCCCcChHHHHHHhhhhcccc
Q 011989 190 FIPRILINMASGHVSMKYGFQ--GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTT 267 (473)
Q Consensus 190 ~~~~~~~~~~a~~ia~~lgl~--Gp~~~v~~acasg~~Al~~A~~~I~~G~~d~vlv~g~d~~~~~~~~~~~~~~~~~~~ 267 (473)
...+..+.+++..+|++ .+++.++.+|+|++.||..|.++|++|.++.|||+++|.++....
T Consensus 114 ----~~~p~~a~~v~~~lGl~~~~~~~~v~~~C~s~~~Al~~A~~~i~~g~~~~vLvvg~e~~s~~~~------------ 177 (365)
T 3gwa_A 114 ----YVLPTSACMLQHRLGIPTHAGALDVNLGCSGYVYGLSLAKGLVETGAARCVLLLTADTYSKYLH------------ 177 (365)
T ss_dssp ----CSBSCHHHHHHHHTTCCTTSEEEEEECSTTHHHHHHHHHHHHHHTTSCSEEEEEEEECGGGGSC------------
T ss_pred ----CCCCcHHHHHHHHcCCCCCceEEEecccChHHHHHHHHHHHHHHcCCCCEEEEEEEchhhccCC------------
Confidence 11223567899999997 589999999999999999999999999999999999998543221
Q ss_pred ccCCCCCCCCcCccCCCCceeeccceEEEEEccchHHHhcCCeEEEEEEEEEEecCCCC----------CCCCC------
Q 011989 268 KYNGTPQEASRPFDCGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHH----------ITQPH------ 331 (473)
Q Consensus 268 ~~~~~~~~~~~pfd~~~~G~~~geGaaavvL~~~~~A~~~g~~~~a~i~g~~~~~d~~~----------~~~~~------ 331 (473)
+..+....++||||+|+||++.+.. ...+ ..+...+++.. ...|.
T Consensus 178 ------------~~dr~~~~lfGDGAaA~vl~~~~~~---~~~i----~~~~~~s~g~~~~~~~~~~gg~~~p~~~~~~~ 238 (365)
T 3gwa_A 178 ------------PLDKSVRTLFGDGASATAVIAEHGE---LERI----GPFVFGTDGRGAPNLIVKAGLFREPKSADSAR 238 (365)
T ss_dssp ------------TTCHHHHTTBCCEEEEEEEEEECSS---SCSE----EEEEEEECGGGGGGEEECSSSSSSCCCTGGGC
T ss_pred ------------cccccccccccceeEEEEEEecCCC---CCce----EEEEEEEcCCCCCeEEecCCCcCCCCcccccc
Confidence 0001124579999999999875421 0112 12222222110 00000
Q ss_pred ----------------CC--------hHHHHHHHHHHHHHcCCCCCCccEEEEcCCCCCCCCHHHHHHHHHHhhcccCCC
Q 011989 332 ----------------ID--------GKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSG 387 (473)
Q Consensus 332 ----------------~~--------~~~~~~a~~~al~~agl~~~dId~v~~hgtgt~~~D~~E~~a~~~~~~~~~~~~ 387 (473)
.. .....++++++|+++|++++|||++.+|-.+.+ + ...+.+.++... .
T Consensus 239 ~~~~~~~~~~~~~~~~m~g~~v~~~~~~~~~~~i~~~L~~~gl~~~did~~v~Hq~n~~----i-~~~~~~~Lgl~~--e 311 (365)
T 3gwa_A 239 EHEDASGNVRTDEHLYMNGAEVMAFSLAEVPRAADRLLALAGEPRENIDCFVLHQANRF----M-LDALRKKMKIPE--H 311 (365)
T ss_dssp CEECTTSCEECTTSEEECHHHHHHHHHHHHHHHHHHHHHHHTCCGGGCSEEEECCCCHH----H-HHHHHHHHTCCG--G
T ss_pred cccccccccccccceEeccHHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEcCCCHH----H-HHHHHHHhCCCH--H
Confidence 01 123446789999999999999999999954333 2 344555555432 1
Q ss_pred CceeeccccchhhhHHhHHHHHHHHHHHHHHhCccCCCCCCCCCCCCCCCCCCccccCCCCCCcEEEEeccccccceeeE
Q 011989 388 SLAFSSTKGAIGHLLGAAGAVEAIFAVLAIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPISAALSNSFGFGGTNASL 467 (473)
Q Consensus 388 ~~~v~s~k~~~Gh~~~AsG~~~li~~~~~l~~~~ipp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~g~gG~~~~~ 467 (473)
++. ..-..+||+.+|+=.+.|.. .++.+.+ .+-..++..+||.|-+..++
T Consensus 312 k~~--~~l~~~GNtssAsipl~L~~---~~~~g~~-------------------------~~Gd~vll~~fG~G~t~~~~ 361 (365)
T 3gwa_A 312 KFP--VLMEHCGNTVSSTLPLALET---MRANGTL-------------------------ARGMRLMLLGFGVGYSWAGC 361 (365)
T ss_dssp GSC--CCCTTTCBCGGGHHHHHHHH---HHHTTCC-------------------------CTTCEEEEEEEETTTEEEEE
T ss_pred HHH--HHHhcccchHHHHHHHHHHH---HHHcCCC-------------------------CCCCEEEEEEEehhheeEEE
Confidence 223 23357899998886654433 3444332 12346677799999999888
Q ss_pred EEe
Q 011989 468 LFT 470 (473)
Q Consensus 468 vl~ 470 (473)
||+
T Consensus 362 ll~ 364 (365)
T 3gwa_A 362 LVN 364 (365)
T ss_dssp EEE
T ss_pred EEE
Confidence 886
|
| >3il3_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, fatty acid biosynthesis, antibiotic, acyltransferase, cytoplasm, lipid synthesis; 2.70A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=99.80 E-value=2.9e-18 Score=167.81 Aligned_cols=241 Identities=18% Similarity=0.177 Sum_probs=164.8
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCceeEEEecCCCChhhHHHHHHHHHHhccccCCCcchhhhhhhHHHHHHHHhcC
Q 011989 129 FIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYG 208 (473)
Q Consensus 129 ~~~la~~aa~~Al~dAgl~~~~~~~~~~~gvivg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lg 208 (473)
...|+.+|+++||+++|+++++++ .|++++..+.. ..+..+.+++..+|
T Consensus 58 ~~~La~~Aa~~aL~~ag~~~~~Id-----~vi~~t~~~~~--------------------------~~p~~a~~v~~~lG 106 (323)
T 3il3_A 58 VATMGFEAAKNAIEAAQINPQDIE-----LIIVATTSHSH--------------------------AYPSAACQVQGLLN 106 (323)
T ss_dssp HHHHHHHHHHHHHHHHCCCGGGCC-----EEEEECSCCSC--------------------------SSSCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCC-----EEEEEeCCCCC--------------------------CCccHHHHHHHHhC
Confidence 578999999999999999988887 88888854321 11235778999999
Q ss_pred CC-CCeeeecCCcchHHHHHHHHHHHHHcCCCCEEEEeecCCCcChHHHHHHhhhhccccccCCCCCCCCcCccCCCCce
Q 011989 209 FQ-GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDGF 287 (473)
Q Consensus 209 l~-Gp~~~v~~acasg~~Al~~A~~~I~~G~~d~vlv~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pfd~~~~G~ 287 (473)
++ .|++.++.+|+|++.||..|.++|++|.++.+||+++|.++.... +..+...+
T Consensus 107 l~~~~~~~v~~~C~s~~~al~~A~~~i~~g~~~~vLvvg~e~~s~~~~------------------------~~d~~~~~ 162 (323)
T 3il3_A 107 IDDAISFDLAAACTGFVYALSVADQFIRAGKVKKALVIGSDLNSRKLD------------------------ETDRSTVV 162 (323)
T ss_dssp CSSCEEEEECCGGGHHHHHHHHHHHHHHTTSCSEEEEEEEEEGGGSCC------------------------TTCTTTTT
T ss_pred CCCccEEEECCccHHHHHHHHHHHHHHHCCCCCEEEEEEeeccccccC------------------------cccccccc
Confidence 96 489999999999999999999999999999999999997532210 11123467
Q ss_pred eeccceEEEEEccchHHHhcCCeEEEEEEEEEEecCCCC---CCCC------------CCCh--------HHHHHHHHHH
Q 011989 288 VIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHH---ITQP------------HIDG--------KGAILAMTRA 344 (473)
Q Consensus 288 ~~geGaaavvL~~~~~A~~~g~~~~a~i~g~~~~~d~~~---~~~~------------~~~~--------~~~~~a~~~a 344 (473)
++||||+|+||++.+ +.. |.++...+++.. ...| ...+ ....++++++
T Consensus 163 lfGDGA~A~vl~~~~-----~~~----i~~~~~~s~g~~~~~~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~i~~~ 233 (323)
T 3il3_A 163 LFGDGAGAVILEASE-----QEG----IISTHLHASADKNNALVLAQPERGIEKSGYIEMQGNETFKLAVRELSNVVEET 233 (323)
T ss_dssp TBCEEEEEEEEEEES-----SCC----EEEEEEEECCCCSCSEECCCCCTTCSSCSCCEECHHHHHHHHHHHHHHHHHHH
T ss_pred ccccceEEEEEEEcC-----CCC----eEEEEEEEcCCCcceEEECCCCCCCCCCCcEEEcCHHHHHHHHHHHHHHHHHH
Confidence 899999999999754 112 233333333221 0000 0111 2244678899
Q ss_pred HHHcCCCCCCccEEEEcCCCCCCCCHHHHHHHHHHhhcccCCCCceeeccccchhhhHHhHHHHHHHHHHHHHHhCccCC
Q 011989 345 LKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLAIHHGVAPL 424 (473)
Q Consensus 345 l~~agl~~~dId~v~~hgtgt~~~D~~E~~a~~~~~~~~~~~~~~~v~s~k~~~Gh~~~AsG~~~li~~~~~l~~~~ipp 424 (473)
|+++|++++|||++.+|-.+.+ + ...+.+.++... .++.. .-..+||+.+|+=.+.|..+ ++.+.+
T Consensus 234 l~~~gl~~~did~~v~Hq~~~~----i-~~~~~~~lgl~~--ek~~~--~l~~~GNt~sasi~~~L~~~---~~~g~~-- 299 (323)
T 3il3_A 234 LLANNLDKKDLDWLVPHQANLR----I-ITATAKKLEMDM--SQVVV--TLDKYANNSAATVPVALDEA---IRDGRI-- 299 (323)
T ss_dssp HHTTTCCTTTCCEEEECCSCHH----H-HHHHHHHTTCCG--GGBCC--CHHHHCBCGGGHHHHHHHHH---HHTTSS--
T ss_pred HHHcCCCHHHCCEEEEcCCCHH----H-HHHHHHHcCcCH--HHhhc--cHhhcCchHHHHHHHHHHHH---HHcCCC--
Confidence 9999999999999999954432 2 234444444322 12222 23467999999866655443 344332
Q ss_pred CCCCCCCCCCCCCCCCccccCCCCCCcEEEEeccccccceeeEEEe
Q 011989 425 TLNLAKPDPIFNDNFMPLTASKDMPISAALSNSFGFGGTNASLLFT 470 (473)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~g~gG~~~~~vl~ 470 (473)
.+-..++..+||.|-+..++||+
T Consensus 300 -----------------------~~Gd~vll~~~G~G~t~~~~~l~ 322 (323)
T 3il3_A 300 -----------------------QRGQLLLLEAFGGGWTWGSALVR 322 (323)
T ss_dssp -----------------------CTTCEEEEEEEETTTEEEEEEEE
T ss_pred -----------------------CCCCEEEEEEEehhheeEEEEEE
Confidence 12345667799999999888886
|
| >3h78_A PQS biosynthetic enzyme; PQSD, anthranilic acid, anthraniloyl-COA, transferase; HET: BE2; 1.70A {Pseudomonas aeruginosa PAO1} PDB: 3h76_A 3h77_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=9.8e-20 Score=180.67 Aligned_cols=243 Identities=16% Similarity=0.149 Sum_probs=163.3
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCceeEEEecCCCChhhHHHHHHHHHHhccccCCCcchhhhhhhHHHHHHHHhcC
Q 011989 129 FIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYG 208 (473)
Q Consensus 129 ~~~la~~aa~~Al~dAgl~~~~~~~~~~~gvivg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lg 208 (473)
...|+.+|+++||+++|+++++++ .|++++..+. ...+..+.+++..+|
T Consensus 74 ~~~La~~Aa~~aL~~agl~~~dId-----~vi~~t~~~~--------------------------~~~p~~a~~v~~~lG 122 (359)
T 3h78_A 74 VSALMVPAARQAIEAAGLLPEDID-----LLLVNTLSPD--------------------------HHDPSQACLIQPLLG 122 (359)
T ss_dssp THHHHHHHHHHHHHHTTCCGGGCC-----EEEEECSSCS--------------------------SSBSCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhcCCCHHHCC-----EEEEEeCCCC--------------------------CCCCcHHHHHHHHcC
Confidence 468999999999999999988887 8888875432 111235678999999
Q ss_pred CCC-CeeeecCCcchHHHHHHHHHHHHHcCCCCEEEEeecCCCcChHHHHHHhhhhccccccCCCCCCCCcCccC-CCCc
Q 011989 209 FQG-PNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDC-GRDG 286 (473)
Q Consensus 209 l~G-p~~~v~~acasg~~Al~~A~~~I~~G~~d~vlv~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pfd~-~~~G 286 (473)
++. |.+.++.+|+|++.||..|.++|++|.++.|||+++|.++.... +-|. +...
T Consensus 123 l~~~~~~~v~~aC~s~~~Al~~A~~~i~sG~~~~vLvvg~e~~S~~~~-----------------------~~d~~~~t~ 179 (359)
T 3h78_A 123 LRHIPVLDIRAQASGLLYGLQMARGQILAGLARHVLVVCGEVLSKRMD-----------------------CSDRGRNLS 179 (359)
T ss_dssp CCSCCEEEEECGGGHHHHHHHHHHHHHHTTSCSEEEEEEEEECGGGCC-----------------------CSTTTHHHH
T ss_pred CCCCcEEEECCHhHHHHHHHHHHHHHHHCCCcCEEEEEEEchhcccCC-----------------------ccccccccc
Confidence 975 89999999999999999999999999999999999997533210 0010 1134
Q ss_pred eeeccceEEEEEccchHHHhcCCeEEEEEEEEEEecCCCC-----C------CCC--------------CCCh-------
Q 011989 287 FVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHH-----I------TQP--------------HIDG------- 334 (473)
Q Consensus 287 ~~~geGaaavvL~~~~~A~~~g~~~~a~i~g~~~~~d~~~-----~------~~~--------------~~~~------- 334 (473)
+++||||+|+||++.+. .+..+ .++...+++.. . ..+ ...+
T Consensus 180 ~lfGDGAaA~vl~~~~~---~~~~i----~~~~~~s~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~g~~v~~~~ 252 (359)
T 3h78_A 180 ILLGDGAGAVVVSAGES---LEDGL----LDLRLGADGNYFDLLMTAAPGSASPTFLDENVLREGGGEFLMRGRPMFEHA 252 (359)
T ss_dssp TTBCEEEEEEEEECCSC---SSSEE----EEEEEEECGGGGGGEEBCCSSTTSSSTTCHHHHHTTTTSCEECHHHHHHHH
T ss_pred ceecceeEEEEEEecCC---CCCce----EEEEEEEccCccceEEeCCCCCccCCccccccccccCCceEeccHHHHHHH
Confidence 67999999999987542 12222 33332222210 0 001 0011
Q ss_pred -HHHHHHHHHHHHHcCCCCCCccEEEEcCCCCCCCCHHHHHHHHHHhhcccCCCCceeeccccchhhhHHhHHHHHHHHH
Q 011989 335 -KGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFA 413 (473)
Q Consensus 335 -~~~~~a~~~al~~agl~~~dId~v~~hgtgt~~~D~~E~~a~~~~~~~~~~~~~~~v~s~k~~~Gh~~~AsG~~~li~~ 413 (473)
.....+++++|+++|++++|||++.+|-.+. .+ ...+.+.++... .+++. .-..+||+.+|+=.+.|..+
T Consensus 253 ~~~~~~~i~~~L~~~gl~~~did~~v~Hq~n~----~i-~~~~~~~lgl~~--ek~~~--~l~~~GNt~sAsi~l~L~~~ 323 (359)
T 3h78_A 253 SQTLVRIAGEMLAAHELTLDDIDHVICHQPNL----RI-LDAVQEQLGIPQ--HKFAV--TVDRLGNMASASTPVTLAMF 323 (359)
T ss_dssp HHHHHHHHHHHHHHTTCCGGGCSEEEECCSCH----HH-HHHHHHHHTCCG--GGBCC--CHHHHCBCGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCHHHCCEEEECCCCH----HH-HHHHHHHhCcCH--HHhhh--hhhcccchHHHHHHHHHHHH
Confidence 2244678999999999999999999994433 22 344445555332 12332 23477999999866655443
Q ss_pred HHHHHhCccCCCCCCCCCCCCCCCCCCccccCCCCCCcEEEEeccccccceeeEEEee
Q 011989 414 VLAIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPISAALSNSFGFGGTNASLLFTK 471 (473)
Q Consensus 414 ~~~l~~~~ipp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~g~gG~~~~~vl~~ 471 (473)
+ +. + .+-..++..+||.|-+..+++|+-
T Consensus 324 ~---~~--l-------------------------~~Gd~vll~~fG~G~t~~~~ll~~ 351 (359)
T 3h78_A 324 W---PD--I-------------------------QPGQRVLVLTYGSGATWGAALYRK 351 (359)
T ss_dssp G---GG--S-------------------------CTTCEEEEEEEETTTEEEEEEEEC
T ss_pred H---Hh--C-------------------------CCCCEEEEEEEchhhhheeeeEEe
Confidence 2 21 1 112356667899998999998873
|
| >3s3l_A CERJ; acyltransferase, FABH homologue, KS III homologue, dimethyl transfer, transferase; 2.00A {Streptomyces tendae} PDB: 3t5y_A* 3t6s_A* 3t8e_A 3t5y_B* | Back alignment and structure |
|---|
Probab=99.79 E-value=1.5e-18 Score=172.07 Aligned_cols=246 Identities=16% Similarity=0.095 Sum_probs=165.0
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCCCCCCceeEEEecCCCChhhHHHHHHHHHHhccccCCCcchhhhhhhHHHHHHHHhc
Q 011989 128 RFIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKY 207 (473)
Q Consensus 128 ~~~~la~~aa~~Al~dAgl~~~~~~~~~~~gvivg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~l 207 (473)
....|+.+|+++||+++|+++++++ .|++++...+ .| ... .++.+++..+
T Consensus 53 ~~~~La~~Aa~~aL~~ag~~~~dId-----~vi~~t~~~~-------------------~~----d~~--~~a~~v~~~l 102 (357)
T 3s3l_A 53 APPRMAARAARAALGRGDVDPADVS-----LVLHSSLWFQ-------------------GI----DLW--PAASYVAHEA 102 (357)
T ss_dssp SHHHHHHHHHHHHHHHTTCCGGGEE-----EEEEECSSCC-------------------SS----SSS--CHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCCHHHCC-----EEEEEeccCC-------------------Cc----ccc--cHHHHHHHHh
Confidence 4678999999999999999887776 7888875310 01 111 2367889999
Q ss_pred CCCC-CeeeecCCcchHHHHHHHHHHHHHcCCCC--EEEEeecCCCcChHHHHHHhhhhccccccCCCCCCCCcCccCCC
Q 011989 208 GFQG-PNHAAVTACATGAHSIGDAARMIQFGDSD--VMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGR 284 (473)
Q Consensus 208 gl~G-p~~~v~~acasg~~Al~~A~~~I~~G~~d--~vlv~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pfd~~~ 284 (473)
|++. +.+.|+.+|+|++.||..|.++|++|.++ .|||+++|.++.+.. .+++ ++
T Consensus 103 G~~~~~~~~v~~aC~~~~~al~~A~~~i~sg~~~~~~vLvvg~e~~s~~~~----------------------~~~~-~~ 159 (357)
T 3s3l_A 103 VGRHVPAFGLAQRCNGGMGAIELAGAYLGSGIGAGHAALLTTGDRFAGPRI----------------------DRWN-SV 159 (357)
T ss_dssp TCSSSCEEEEECGGGHHHHHHHHHHHHHHTTSSSSSEEEEEEEECCCTTTC----------------------CTTT-SS
T ss_pred CCCCCcEEEEcCccHHHHHHHHHHHHHHHcCCCCCCEEEEEEEeccccccc----------------------cccc-cc
Confidence 9975 89999999999999999999999999999 999999998543210 0122 12
Q ss_pred CceeeccceEEEEEccchHHHhcCCeEEEEEEEEEEecCCCC--C------CCC-------CCC----------------
Q 011989 285 DGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHH--I------TQP-------HID---------------- 333 (473)
Q Consensus 285 ~G~~~geGaaavvL~~~~~A~~~g~~~~a~i~g~~~~~d~~~--~------~~~-------~~~---------------- 333 (473)
..+++||||+|+||++.+. + ..|.++...+++.. . ..| ...
T Consensus 160 ~~~lfGDGA~A~vl~~~~~----~----~~i~~~~~~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~ 231 (357)
T 3s3l_A 160 DVTMYGDGAAALVLSTRDG----F----ARVLSTATGVDNSLEILARGDEPFAPHPVEPSPVADLGTRTVRGAELADLPD 231 (357)
T ss_dssp SSCCBCCEEEEEEEESSCC----S----EEEEEEEEEECGGGGGGGTTTCCCCSSCCSSCCCCCHHHHHHHHHHHHCCTT
T ss_pred CCcccccccEEEEEecCCC----C----CeEEEEEEEEccChhhhcccCCCCCCCccCcCCccccccchhhhhcccchhh
Confidence 5788999999999987431 1 23555555554431 0 001 000
Q ss_pred -----hHHHHHHHHHHHHHcCCCCCCccEEEE-cCCCCCCCCHHHHHHHHHHhhcccCCCCceeeccccchhhhHHhHHH
Q 011989 334 -----GKGAILAMTRALKQSGLQSHQVDYVNA-HATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGA 407 (473)
Q Consensus 334 -----~~~~~~a~~~al~~agl~~~dId~v~~-hgtgt~~~D~~E~~a~~~~~~~~~~~~~~~v~s~k~~~Gh~~~AsG~ 407 (473)
.....++++++|+++|++++|||++.+ |-.+.. -+. +.+.++... .++.. .....+||+.+|+=.
T Consensus 232 ~~~~~~~~~~~~i~~~L~~~gl~~~did~~v~~hq~~~~-~~~-----~~~~lgl~~--ek~~~-~~~~~~GNt~aAsip 302 (357)
T 3s3l_A 232 LTHRYIDLLVAAKTQALEDAGTAIEDIAHAVIPVSRRGT-GHE-----LHDLLGLPD--ERTSW-AYGRTTGHVGAGDQY 302 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCGGGCSEEECCSCCCCS-SCC-----HHHHHTSCG--GGBTH-HHHHHHCBCTTCHHH
T ss_pred hHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEecCcChHH-HHH-----HHHHcCCCH--HHhHH-HhccccccchHhHHH
Confidence 113445788999999999999999996 865554 333 333344322 12221 233357888888766
Q ss_pred HHHHHHHHHHHhCccCCCCCCCCCCCCCCCCCCccccCCCCCCcEEEEeccccccceeeEEEee
Q 011989 408 VEAIFAVLAIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPISAALSNSFGFGGTNASLLFTK 471 (473)
Q Consensus 408 ~~li~~~~~l~~~~ipp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~g~gG~~~~~vl~~ 471 (473)
+.|..+ ++.+.+ .+-..++..+||.|-+..+++|+-
T Consensus 303 l~L~~~---~~~g~l-------------------------~~Gd~vll~~fG~G~t~~a~ll~~ 338 (357)
T 3s3l_A 303 AGLAHL---VENALV-------------------------QPGDRVLLFGGGAGYTCTAAVVEI 338 (357)
T ss_dssp HHHHHH---HHTTCC-------------------------CTTCEEEEECCBTTTEEEEEEEEE
T ss_pred HHHHHH---HHcCCC-------------------------CCCCEEEEEEEchhhhheeeeEEe
Confidence 555433 343332 123466777999998888888864
|
| >1xes_A Dihydropinosylvin synthase; native structure, transferase; HET: 3IO; 1.70A {Pinus sylvestris} PDB: 1xet_A* 1u0u_A | Back alignment and structure |
|---|
Probab=99.79 E-value=1e-18 Score=176.62 Aligned_cols=266 Identities=12% Similarity=0.056 Sum_probs=176.5
Q ss_pred hhccCHHHHHHHHHHHHHHHHcCCCCCCCCCCCceeEEEecCCCChhhHHHHHHHHHHhccccCCCcchhhhhhhHHHHH
Q 011989 123 HRSIARFIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGH 202 (473)
Q Consensus 123 ~~~~~~~~~la~~aa~~Al~dAgl~~~~~~~~~~~gvivg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 202 (473)
...++....|+.+|+++||+++|+++++++ .|+++++.+ . ..+..+.+
T Consensus 119 ~~~~~~~~~La~~Aa~~AL~~agl~~~~Id-----~li~~t~~~----------------------~-----~~p~~a~~ 166 (413)
T 1xes_A 119 AMLAMEVPRLAKEAAEKAIQEWGQSKSGIT-----HLIFCSTTT----------------------P-----DLPGADFE 166 (413)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCSCGGGCC-----EEEEEESCC----------------------C-----EESCHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHcCCCHHHCC-----EEEEEEeCC----------------------C-----ccchHHHH
Confidence 334457889999999999999999888877 788887542 1 12245678
Q ss_pred HHHhcCCCCC---eeeecCCcchHHHHHHHHHHHHHcCCCCEEEEeecCCCcChHHHHHHhhhhccccccCCCCCCCCcC
Q 011989 203 VSMKYGFQGP---NHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRP 279 (473)
Q Consensus 203 ia~~lgl~Gp---~~~v~~acasg~~Al~~A~~~I~~G~~d~vlv~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 279 (473)
|+..||+++. .+.+..+|+|++.||..|.++|++|.++.|||+|+|.++..+. . +. .++
T Consensus 167 v~~~lGl~~~~~~~~~v~~aCas~~~AL~~A~~~i~~G~~~~vLvvg~E~~s~~~~----------~------~~--d~~ 228 (413)
T 1xes_A 167 VAKLLGLHPSVKRVGVFQHGCFAGGTVLRMAKDLAENNRGARVLVICSETTAVTFR----------G------PS--ETH 228 (413)
T ss_dssp HHHHHTCCTTCEEEEEESCCTTHHHHHHHHHHHHHHTSTTCCEEEEEEECTTTTCC----------C------CC--TTC
T ss_pred HHHHcCcCCccchhceecCccHHHHHHHHHHHHHHHcCCCCEEEEEEehhhhhhhc----------C------CC--ccc
Confidence 9999999875 7899999999999999999999999999999999997543110 0 11 134
Q ss_pred ccCCCCceeeccceEEEEEccchHHHhcC-CeEEEEEEEEEEecCCC--CC------------C-CCC---CChHHHHHH
Q 011989 280 FDCGRDGFVIGEGSGVLVLEELEHAKKRG-AKIYAEVRGYGMSGDAH--HI------------T-QPH---IDGKGAILA 340 (473)
Q Consensus 280 fd~~~~G~~~geGaaavvL~~~~~A~~~g-~~~~a~i~g~~~~~d~~--~~------------~-~~~---~~~~~~~~a 340 (473)
|+....++++||||+|+||++.+.. + .....++.+.+....+. .. . ... .....+..+
T Consensus 229 ~~~~~~~~lfGDGA~A~vl~~~~~~---~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~~v~~~~~~~~~~~ 305 (413)
T 1xes_A 229 LDSLVGQALFGDGASALIVGADPIP---QVEKACFEIVWTAQTVVPNSEGAIGGKVREVGLTFQLKGAVPDLISANIENC 305 (413)
T ss_dssp HHHHHHHHHBCCEEEEEEEESSCCT---TTSCCSEEEEEEEEEECTTCTTTEEEEEETTEEEEEECTTHHHHHHHHHHHH
T ss_pred hhhcccceeEecccEEEEEecCCCc---cccCCceEEEeeeeEEcCCChhhcCcEEecCceEEEecccHHHHHHHHHHHH
Confidence 5555678999999999999875431 2 11112444443321110 00 0 000 112345678
Q ss_pred HHHHHHHcCCC-CCCccEEEEcCCCCCCCCHHHHHHHHHHhhcccCCCCceee-ccccchhhhHHhHHHHHHHHHHHHHH
Q 011989 341 MTRALKQSGLQ-SHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFS-STKGAIGHLLGAAGAVEAIFAVLAIH 418 (473)
Q Consensus 341 ~~~al~~agl~-~~dId~v~~hgtgt~~~D~~E~~a~~~~~~~~~~~~~~~v~-s~k~~~Gh~~~AsG~~~li~~~~~l~ 418 (473)
++++|+++|++ .+|| ++.+|..+... ..++.+.++... .++..+ .+...+||+.+|+-.+.|..++..-+
T Consensus 306 i~~~L~~~gl~d~~di-~~v~Hq~~~~i-----~~~~~~~Lgl~~--ek~~~s~~~l~~~GNtssAsi~~~L~~~~~~g~ 377 (413)
T 1xes_A 306 MVEAFSQFKISDWNKL-FWVVHPGGRAI-----LDRVEAKLNLDP--TKLIPTRHVMSEYGNMSSACVHFILDQTRKASL 377 (413)
T ss_dssp HHHHHGGGTCCCGGGS-EEEECCSCHHH-----HHHHHHHTTCCT--TTTHHHHHHHHHHCBCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCccce-eEEECCCCHHH-----HHHHHHHcCCCh--HHhHHHHHHHHhcCcCchhhHHHHHHHHHHhcc
Confidence 89999999998 8888 89999654433 223444454322 233332 34567999999998887776654421
Q ss_pred -hCccCCCCCCCCCCCCCCCCCCccccCCCCCCcEEEEeccccccceeeEEEee
Q 011989 419 -HGVAPLTLNLAKPDPIFNDNFMPLTASKDMPISAALSNSFGFGGTNASLLFTK 471 (473)
Q Consensus 419 -~~~ipp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~g~gG~~~~~vl~~ 471 (473)
.|.+.| . .....++..+||.|-+..+++|+.
T Consensus 378 ~~G~~~~------------------G----~~~d~vll~~fG~G~t~~~~ll~~ 409 (413)
T 1xes_A 378 QNGCSTT------------------G----EGLEMGVLFGFGPGLTIETVVLKS 409 (413)
T ss_dssp HTTCSBT------------------T----TTCSEEEEEEEETTTEEEEEEEEE
T ss_pred ccCCCCC------------------C----CCcceEEEEEecCCcEEeEEEEEe
Confidence 111000 0 012567777999988888888874
|
| >3il6_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, fatty acid biosynthesis, antibiotic, acyltransferase, cytoplasm, lipid synthesis; HET: B83; 2.50A {Enterococcus faecalis} PDB: 3il5_A* 3il4_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=2.6e-18 Score=168.10 Aligned_cols=242 Identities=16% Similarity=0.164 Sum_probs=158.0
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCceeEEEecCCCChhhHHHHHHHHHHhccccCCCcchhhhhhhHHHHHHHHhcC
Q 011989 129 FIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYG 208 (473)
Q Consensus 129 ~~~la~~aa~~Al~dAgl~~~~~~~~~~~gvivg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lg 208 (473)
...|+.+|+++||+++|+++++++ .|++++...+ ...+..+.+++..||
T Consensus 52 ~~~La~~Aa~~aL~~ag~~~~~Id-----~li~~t~~~~--------------------------~~~p~~a~~v~~~lG 100 (321)
T 3il6_A 52 TSDLCHQVAKQLLEKSGKQASEID-----FILVATVTPD--------------------------FNMPSVACQVQGAIG 100 (321)
T ss_dssp HHHHHHHHHHHHHHHHTCCGGGCC-----EEEEECSSCS--------------------------CSSSCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCC-----EEEEEeCCCC--------------------------cCCCcHHHHHHHHcC
Confidence 678999999999999999988887 8888875422 112245778999999
Q ss_pred CC-CCeeeecCCcchHHHHHHHHHHHHHcCCCCEEEEeecCCCcChHHHHHHhhhhccccccCCCCCCCCcCccCCCCce
Q 011989 209 FQ-GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDGF 287 (473)
Q Consensus 209 l~-Gp~~~v~~acasg~~Al~~A~~~I~~G~~d~vlv~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pfd~~~~G~ 287 (473)
++ .|.+.++.+|+|++.||..|.++|++|.++.+||+++|.++.... +..+....
T Consensus 101 l~~~~~~~v~~aC~s~~~al~~A~~~i~~g~~~~vLvvg~e~~s~~~~------------------------~~dr~~~~ 156 (321)
T 3il6_A 101 ATEAFAFDISAACSGFVYALSMAEKLVLSGRYQTGLVIGGETFSKMLD------------------------WTDRSTAV 156 (321)
T ss_dssp CTTCEEEEECCGGGHHHHHHHHHHHHHHTSSCCCEEEEEEECGGGGSC------------------------TTCTTTGG
T ss_pred CCCceEEEeCcccHHHHHHHHHHHHHHHCCCCCEEEEEEEccccccCC------------------------ccccccce
Confidence 97 489999999999999999999999999999999999998532110 11223467
Q ss_pred eeccceEEEEEccchHHHhcCCeEEEEEEEEEEecCCC------------C--CCC--------CCCChHH----HHHHH
Q 011989 288 VIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAH------------H--ITQ--------PHIDGKG----AILAM 341 (473)
Q Consensus 288 ~~geGaaavvL~~~~~A~~~g~~~~a~i~g~~~~~d~~------------~--~~~--------~~~~~~~----~~~a~ 341 (473)
++||||+|+||++.+. + .+ .++...+++. . ... ....+.. ..+.+
T Consensus 157 lfGDGA~A~vl~~~~~----~-~i----~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~ 227 (321)
T 3il6_A 157 LFGDGAAGVLIEAAET----P-HF----LNEKLQADGQRWTALTSGYTINESPFYQGHKQASKTLQMEGRSIFDFAIKDV 227 (321)
T ss_dssp GBCCEEEEEEEEEESS----C-CE----EEEEEEECGGGGGGEECCCCCCCSTTCCCCCCCCCSCEECHHHHHHHHHHHH
T ss_pred eeccccEEEEEEEcCC----C-CE----EEEEEEEcCCCCCeEEeCCCCCCCCCCccccccccceeechHHHHHHHHHHH
Confidence 8999999999997542 1 12 2222222221 0 000 0011111 12333
Q ss_pred HHHHHHcCCCCCCccEEEEcCCCCCCCCHHHHHHHHHHhhcccCCCCceeeccccchhhhHHhHHHHHHHHHHHHHHhCc
Q 011989 342 TRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLAIHHGV 421 (473)
Q Consensus 342 ~~al~~agl~~~dId~v~~hgtgt~~~D~~E~~a~~~~~~~~~~~~~~~v~s~k~~~Gh~~~AsG~~~li~~~~~l~~~~ 421 (473)
.++++++ +.++|||++.+|-.+.+ + ..++.+.++... .+++ ..-..+||+.+|+=.+.|-.+ ++.+.
T Consensus 228 ~~~i~~~-l~~~did~~v~Hq~~~~----i-~~~~~~~lgl~~--ek~~--~~l~~~GNt~sasi~~~L~~~---~~~g~ 294 (321)
T 3il6_A 228 SQNILSL-VTDETVDYLLLHQANVR----I-IDKIARKTKISR--EKFL--TNMDKYGNTSAASIPILLDEA---VENGT 294 (321)
T ss_dssp HHHHHTT-CCGGGCSEEEECCSCHH----H-HHHHHHHHTCCG--GGBC--CCGGGTCBCGGGHHHHHHHHH---HHTTS
T ss_pred HHHHHHH-cCcccCCEEEEcCCCHH----H-HHHHHHHcCcCH--HHhh--hhHhhcccHHHHHHHHHHHHH---HHhCC
Confidence 3444433 33899999999944332 2 344555555432 1233 245688999999866655433 44443
Q ss_pred cCCCCCCCCCCCCCCCCCCccccCCCCCCcEEEEeccccccceeeEEEe
Q 011989 422 APLTLNLAKPDPIFNDNFMPLTASKDMPISAALSNSFGFGGTNASLLFT 470 (473)
Q Consensus 422 ipp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~g~gG~~~~~vl~ 470 (473)
+.| .....++..+||.|-+..++||+
T Consensus 295 ~~~-----------------------G~~d~vll~~fG~G~t~~~~~l~ 320 (321)
T 3il6_A 295 LIL-----------------------GSQQRVVLTGFGGGLTWGSLLLT 320 (321)
T ss_dssp SCT-----------------------TSCCEEEEEEEETTTEEEEEEEE
T ss_pred CCC-----------------------CCCCEEEEEEEehhheeEEEEEE
Confidence 211 11156777799999999998886
|
| >1xpm_A 3-hydroxy-3-methylglutaryl COA synthase; HMG-COA synthase, HMGS, coenzyme A, thiolase fold, condensing enzyme; HET: HMG CAA; 1.60A {Staphylococcus aureus subsp} SCOP: c.95.1.2 c.95.1.2 PDB: 1xpl_A* 1xpk_A* 1tvz_A 1txt_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=3.5e-19 Score=179.23 Aligned_cols=219 Identities=14% Similarity=0.079 Sum_probs=147.5
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCCCCCCceeEEEecCCCChhhHHHHHHHHHHhccccCCCcchhhhhhhHHHHHHHHhc
Q 011989 128 RFIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKY 207 (473)
Q Consensus 128 ~~~~la~~aa~~Al~dAgl~~~~~~~~~~~gvivg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~l 207 (473)
....|++.|+++||++ +++++++ .|++|+..+. ...+..+..|+..|
T Consensus 50 ~~~~la~~Aa~~aL~~--~~~~~Id-----~li~~t~~~~--------------------------~~~p~~a~~v~~~l 96 (396)
T 1xpm_A 50 DIVSMGANAAKDIITD--EDKKKIG-----MVIVATESAV--------------------------DAAKAAAVQIHNLL 96 (396)
T ss_dssp CHHHHHHHHHHTTCCH--HHHHHEE-----EEEEECSSCS--------------------------BSSSCHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHhc--CCHHHCC-----EEEEEeCCCC--------------------------CCCCCHHHHHHHHh
Confidence 3578999999999987 4433333 4566765432 01124667899999
Q ss_pred CCCC--CeeeecCCcchHHHHHHHHHHHHHcCCCCEEEEeecCCCcChHHHHHHhhhhccccccCCCCCCCCcCccCCCC
Q 011989 208 GFQG--PNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRD 285 (473)
Q Consensus 208 gl~G--p~~~v~~acasg~~Al~~A~~~I~~G~~d~vlv~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pfd~~~~ 285 (473)
|+++ +++.+..+|+|++.||..|.++|++|.++.|||+|+|. .... ++ ..+
T Consensus 97 Gl~~~~~~~~v~~aC~sg~~Al~~A~~~I~sg~~~~vLvvg~e~-s~~~-------------------------~~-~~~ 149 (396)
T 1xpm_A 97 GIQPFARCFEMKEACYAATPAIQLAKDYLATRPNEKVLVIATDT-ARYG-------------------------LN-SGG 149 (396)
T ss_dssp TCCSSCEEEEEESTTTTHHHHHHHHHHHHTTCTTCEEEEEEEEE-ECCC-------------------------TT-CSS
T ss_pred CCCCCceEEEeccccHHHHHHHHHHHHHHHcCCCCEEEEEeehh-hccc-------------------------cC-CCC
Confidence 9974 89999999999999999999999999999999999995 1110 11 136
Q ss_pred ceeeccceEEEEEccchHHHhcCCeEEEEEEEEEEec-CCCCCCCCCC------ChHH--------HHHHHHHHHHHcCC
Q 011989 286 GFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSG-DAHHITQPHI------DGKG--------AILAMTRALKQSGL 350 (473)
Q Consensus 286 G~~~geGaaavvL~~~~~A~~~g~~~~a~i~g~~~~~-d~~~~~~~~~------~~~~--------~~~a~~~al~~agl 350 (473)
++++||||+|+||++.+ .+++...+.+... +..+...|.. .+.. ..++++++|+++|+
T Consensus 150 ~~~~GdGA~A~vl~~~~-------~i~~~~~~~g~~~~d~~~~~~p~~~~~~~~~G~~~~~~~~~~~~~~~~~~L~~agl 222 (396)
T 1xpm_A 150 EPTQGAGAVAMVIAHNP-------SILALNEDAVAYTEDVYDFWRPTGHKYPLVDGALSKDAYIRSFQQSWNEYAKRQGK 222 (396)
T ss_dssp GGGCEEEEEEEEEEESC-------SSEEECSCCEEEECCCCSEECBTTCSSCEECHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred CcccccceEEEEeccCC-------ceEEEEeccccccceEEEeeccCCCCCeEEEcHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 88999999999998632 2444444433322 3332222221 3333 56789999999999
Q ss_pred CCCCccEEEEcCCCCCCCCHHHHHHHHHHhhcccCCCCc-----eeeccccchhhhHHhHHHHHHHHHHH
Q 011989 351 QSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSL-----AFSSTKGAIGHLLGAAGAVEAIFAVL 415 (473)
Q Consensus 351 ~~~dId~v~~hgtgt~~~D~~E~~a~~~~~~~~~~~~~~-----~v~s~k~~~Gh~~~AsG~~~li~~~~ 415 (473)
+++||||+.+|.++++..|.+....+....+... ..+ |-......+||+.+||-.+.|..++.
T Consensus 223 ~~~did~~~~H~~~~~~~~~~~~~l~~~~~~~~~--e~~~~~~~~s~~~~~~~GN~~saSi~l~L~~~l~ 290 (396)
T 1xpm_A 223 SLADFASLCFHVPFTKMGKKALESIIDNADETTQ--ERLRSGYEDAVDYNRYVGNIYTGSLYLSLISLLE 290 (396)
T ss_dssp CGGGCSEEEECCSSHHHHHHHHHTTGGGSCHHHH--HHHHHHHHHHTTGGGGTCCCGGGHHHHHHHHHHH
T ss_pred CHHHCCEEEecCCchHHHHHHHHHHHhhcccCCH--HHHHHHhhhhhhhhhhcCchHHHHHHHHHHHHHH
Confidence 9999999999999998877654322111000000 001 11122367999999998777765543
|
| >3a5r_A Benzalacetone synthase; chalcone synthase, type III polyketide synthase, transferase, acyltransferase; HET: HC4; 1.60A {Rheum palmatum} PDB: 3a5q_A* 3a5s_A | Back alignment and structure |
|---|
Probab=99.76 E-value=1e-17 Score=168.28 Aligned_cols=267 Identities=10% Similarity=0.045 Sum_probs=177.0
Q ss_pred CCchhhhccCHHHHHHHHHHHHHHHHcCCCCCCCCCCCceeEEEecCCCChhhHHHHHHHHHHhccccCCCcchhhhhhh
Q 011989 118 LNSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILIN 197 (473)
Q Consensus 118 ~~~~~~~~~~~~~~la~~aa~~Al~dAgl~~~~~~~~~~~gvivg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (473)
+..+....+.....|+.+|+++||+++|+++++++ .|++++..+. ..+
T Consensus 87 ~~~r~~~~~~~~~~La~~Aa~~aL~~ag~~~~~Id-----~li~~t~~~~---------------------------~~p 134 (387)
T 3a5r_A 87 LNVRHKMQVKGVAELGKEAALKAIKEWGQPKSKIT-----HLIVCCLAGV---------------------------DMP 134 (387)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCSCGGGCC-----EEEEEESSCC---------------------------EES
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHCC-----EEEEEecCCC---------------------------CCC
Confidence 33444555567889999999999999999888877 7888875421 123
Q ss_pred HHHHHHHHhcCCCCC---eeeecCCcchHHHHHHHHHHHHHcCCCCEEEEeecCCCcChHHHHHHhhhhccccccCCCCC
Q 011989 198 MASGHVSMKYGFQGP---NHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQ 274 (473)
Q Consensus 198 ~~a~~ia~~lgl~Gp---~~~v~~acasg~~Al~~A~~~I~~G~~d~vlv~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (473)
..+.+|+..||+++. .+.+..+|+|++.||..|.++|++|.++.|||+++|.++..+
T Consensus 135 ~~a~~v~~~lGl~~~~~~~~~v~~aC~s~~~al~~A~~~i~~g~~~~vLvvg~e~~s~~~-------------------- 194 (387)
T 3a5r_A 135 GADYQLTKLLDLDPSVKRFMFYHLGCYAGGTVLRLAKDIAENNKGARVLIVCSEMTTTCF-------------------- 194 (387)
T ss_dssp CHHHHHHHHTTCCTTCEEEEEESCCTTHHHHHHHHHHHHHHHSTTCEEEEEEEECCTTTC--------------------
T ss_pred cHHHHHHHHcCcCCCcceeeeEccccHHHHHHHHHHHHHHHhCCCCEEEEEEEeccchhh--------------------
Confidence 467789999999875 788999999999999999999999999999999999753211
Q ss_pred CCCcCcc----CCCCceeeccceEEEEEccchHHHhcC-CeEEEEEEEEEEecCCCCCC---------------CCC---
Q 011989 275 EASRPFD----CGRDGFVIGEGSGVLVLEELEHAKKRG-AKIYAEVRGYGMSGDAHHIT---------------QPH--- 331 (473)
Q Consensus 275 ~~~~pfd----~~~~G~~~geGaaavvL~~~~~A~~~g-~~~~a~i~g~~~~~d~~~~~---------------~~~--- 331 (473)
..|+| ....++++||||+|+||++.+.. + .....++.+.+....+.... ...
T Consensus 195 --~~~~d~~~~~~~~~~lfGDGA~A~vl~~~~~~---~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~~v~~ 269 (387)
T 3a5r_A 195 --RGPSETHLDSMIGQAILGDGAAAVIVGADPDL---TVERPIFELVSTAQTIVPESHGAIEGHLLESGLSFHLYKTVPT 269 (387)
T ss_dssp --CCCCSSCCSSTTHHHHBCCEEEEEEEESSCCT---TTCCCCEEEEEEEEEECTTCTTSEEEEEETTEEEEEECTTHHH
T ss_pred --cCCCccchhhccccceeccceeEEEEecCCCc---cccCCceEEEeeeEEEeCCChHhcCceEcCCCeEEEecchHHH
Confidence 11232 23357899999999999875431 1 11112444443321111000 000
Q ss_pred CChHHHHHHHHHHHHHcCCC-CCCccEEEEcCCCCCCCCHHHHHHHHHHhhcccCCCCceee-ccccchhhhHHhHHHHH
Q 011989 332 IDGKGAILAMTRALKQSGLQ-SHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFS-STKGAIGHLLGAAGAVE 409 (473)
Q Consensus 332 ~~~~~~~~a~~~al~~agl~-~~dId~v~~hgtgt~~~D~~E~~a~~~~~~~~~~~~~~~v~-s~k~~~Gh~~~AsG~~~ 409 (473)
.....+..+++++|+++|++ .+|| ++.+|..+.... .++.+.++... .++..+ .+...+||+.+|+-.+.
T Consensus 270 ~~~~~~~~~i~~~L~~~gl~d~~di-~~v~Hq~~~~i~-----~~~~~~lgl~~--ek~~~s~~~l~~~GNtssAsi~~~ 341 (387)
T 3a5r_A 270 LISNNIKTCLSDAFTPLNISDWNSL-FWIAHPGGPAIL-----DQVTAKVGLEK--EKLKVTRQVLKDYGNMSSATVFFI 341 (387)
T ss_dssp HHHHHHHHHHHHHHGGGTCCCGGGS-EEEECCSCHHHH-----HHHHHHHTCCG--GGGHHHHHHHHHHCBCGGGHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCChhhe-eEEECCCCHHHH-----HHHHHHcCCCh--HHhHHHHHHHHhcCCcchhHHHHH
Confidence 01233556889999999998 8899 899996654432 23444454321 123332 34578999999998887
Q ss_pred HHHHHHHH-HhCccCCCCCCCCCCCCCCCCCCccccCCCCCCcEEEEeccccccceeeEEEee
Q 011989 410 AIFAVLAI-HHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPISAALSNSFGFGGTNASLLFTK 471 (473)
Q Consensus 410 li~~~~~l-~~~~ipp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~g~gG~~~~~vl~~ 471 (473)
|..++..= +.|.+.| ......++..+||.|-+..+++|+.
T Consensus 342 L~~~~~~g~~~G~~~~----------------------G~~~d~vll~~fG~G~t~~~~ll~~ 382 (387)
T 3a5r_A 342 MDEMRKKSLENGQATT----------------------GEGLEWGVLFGFGPGITVETVVLRS 382 (387)
T ss_dssp HHHHHHHHHHTTCSBT----------------------TTTCSEEEEEEEETTTEEEEEEEEE
T ss_pred HHHHHHhccccCCCCC----------------------CCCcceEEEEEecCcceeeehhhee
Confidence 77665442 1111000 0012567777999988888888874
|
| >4efi_A 3-oxoacyl-(acyl-carrier protein) synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.35A {Burkholderia xenovorans} | Back alignment and structure |
|---|
Probab=99.76 E-value=7.5e-18 Score=167.03 Aligned_cols=242 Identities=12% Similarity=0.088 Sum_probs=164.2
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCceeEEEecCCCChhhHHHHHHHHHHhccccCCCcchhhhhhhHHHHHHHHhcC
Q 011989 129 FIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYG 208 (473)
Q Consensus 129 ~~~la~~aa~~Al~dAgl~~~~~~~~~~~gvivg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lg 208 (473)
...|+.+|+++||+++|+++++++ .|++++..+.. ..+..+.+++..+|
T Consensus 66 ~~~La~~Aa~~aL~~agi~~~~Id-----~vi~~t~~~~~--------------------------~~p~~a~~v~~~lG 114 (354)
T 4efi_A 66 AGDLCRKAGEKLLAGLGWQADSID-----ALIFVSQTPNY--------------------------RLPATAFVLQAELD 114 (354)
T ss_dssp HHHHHHHHHHHHHHHHTCCGGGCC-----EEEEECSSCSC--------------------------SSSCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCC-----EEEEEeCCCCC--------------------------CCCcHHHHHHHHcC
Confidence 578999999999999999988887 88888765321 12345678999999
Q ss_pred CC--CCeeeecCCcchHHHHHHHHHHHHHcCCCCEEEEeecCCCcChHHHHHHhhhhccccccCCCCCCCCcCccCCCCc
Q 011989 209 FQ--GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDG 286 (473)
Q Consensus 209 l~--Gp~~~v~~acasg~~Al~~A~~~I~~G~~d~vlv~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pfd~~~~G 286 (473)
++ .+.+.+..+|+|++.||..|.++|++|.++.|||+++|.++.... ++.....
T Consensus 115 l~~~~~~~~v~~aC~s~~~al~~A~~~i~~g~~~~vLvvg~e~~s~~~~------------------------~~d~~~~ 170 (354)
T 4efi_A 115 LPASCLALDINLGCSGYPQALWLGMNLIQTGAAKRVLLAVGDTISKMID------------------------PTDRSTS 170 (354)
T ss_dssp CCTTSEEEEECCCTTHHHHHHHHHHHHHHTTSCSEEEEEEEECGGGGCC------------------------TTCHHHH
T ss_pred cCCCccEEeeCcccHHHHHHHHHHHHHHHCCCCCEEEEEEechhcccCC------------------------ccccccc
Confidence 93 589999999999999999999999999999999999998533210 1111235
Q ss_pred eeeccceEEEEEccchHHHhcCCeEEEEEEEEEEecCCCC-----C----CCC-----------------CCCh------
Q 011989 287 FVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHH-----I----TQP-----------------HIDG------ 334 (473)
Q Consensus 287 ~~~geGaaavvL~~~~~A~~~g~~~~a~i~g~~~~~d~~~-----~----~~~-----------------~~~~------ 334 (473)
.++||||+|+||++.+.. .++ .+...+++.. . ..| ...+
T Consensus 171 ~lfGDGA~A~vl~~~~~~-----~~~----~~~~~s~g~~~~~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~g~~v~~~ 241 (354)
T 4efi_A 171 LLFGDAGTMTALETSNGD-----AAA----HFIIGADGKGARNLIVPSGGFKPYDAAADERMAGKSPECLFMDGGEIFNF 241 (354)
T ss_dssp TTBCCEEEEEEEEECCSC-----CEE----EEEEEECGGGGGGEECCSSSSSCCCGGGCGGGTTCCTTSCEECHHHHHHH
T ss_pred cccccceeEEEEeecCCC-----Cce----EEEEEEcCCCcceEEecCCCCCCCccccccccccccccceEEccHHHHHH
Confidence 679999999999875421 111 2222222210 0 001 0011
Q ss_pred --HHHHHHHHHHHHHcCCCCCCccEEEEcCCCCCCCCHHHHHHHHHHhhcccCCCCceeeccccchhhhHHhHHHHHHHH
Q 011989 335 --KGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIF 412 (473)
Q Consensus 335 --~~~~~a~~~al~~agl~~~dId~v~~hgtgt~~~D~~E~~a~~~~~~~~~~~~~~~v~s~k~~~Gh~~~AsG~~~li~ 412 (473)
....++++++|+++|++++|||++.+|-.+.+ + ..++.+.++... .++. ..-..+||+.+|+=.+.|..
T Consensus 242 ~~~~~~~~i~~~l~~~gl~~~did~~v~Hq~~~~----i-~~~~~~~Lgl~~--ek~~--~~l~~~GNt~sasi~~~L~~ 312 (354)
T 4efi_A 242 TLNAVPKLVSRTLDIAGRDKDSYDAFLFHQANLF----M-LKHLAKKAGLPA--ERVP--VNIGEYGNTSCASIPLLITT 312 (354)
T ss_dssp HHHHHHHHHHHHHHHHTCCGGGCSEEEECCCCHH----H-HHHHHHHTTCCG--GGSC--CCHHHHCBCGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCCEEEeCCCCHH----H-HHHHHHHhCcCH--HHHH--HHHhhhCcHHHHHHHHHHHH
Confidence 23446788999999999999999999954433 2 334445454322 1222 22367899999987766655
Q ss_pred HHHHHHhCccCCCCCCCCCCCCCCCCCCccccCCCCCCcEEEEeccccccceeeEEEee
Q 011989 413 AVLAIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPISAALSNSFGFGGTNASLLFTK 471 (473)
Q Consensus 413 ~~~~l~~~~ipp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~g~gG~~~~~vl~~ 471 (473)
++. .+.+. +-..++..+||.|-+..+++|+-
T Consensus 313 ~~~---~g~~~-------------------------~Gd~vll~~fG~G~t~~~~ll~~ 343 (354)
T 4efi_A 313 ELK---DRLKE-------------------------ETLQLGMFGFGVGYSWASAALAV 343 (354)
T ss_dssp HSH---HHHHH-------------------------SCEEEEEEEEETTTEEEEEEEEE
T ss_pred HHH---hCCCC-------------------------CCCEEEEEEEchhhhheeeEEEE
Confidence 433 22211 12456777999999999998874
|
| >4ewp_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; transferase; 2.20A {Micrococcus luteus nctc 2665} | Back alignment and structure |
|---|
Probab=99.75 E-value=6.3e-18 Score=167.65 Aligned_cols=246 Identities=20% Similarity=0.230 Sum_probs=159.8
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCceeEEEecCCCChhhHHHHHHHHHHhccccCCCcchhhhhhhHHHHHHHHhcC
Q 011989 129 FIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYG 208 (473)
Q Consensus 129 ~~~la~~aa~~Al~dAgl~~~~~~~~~~~gvivg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lg 208 (473)
...|+.+|+++||+++|+++++++ .|++++++++ +..+..+..|...||
T Consensus 62 ~~~la~~Aa~~aL~~ag~~~~dId-----~li~~t~t~~--------------------------~~~P~~a~~v~~~LG 110 (350)
T 4ewp_A 62 VPVMAVGAAREALERAGLQGSDLD-----AVIVSTVTFP--------------------------HATPSAAALVAHEIG 110 (350)
T ss_dssp HHHHHHHHHHHHHHHTTCCGGGCS-----EEEEECSCCS--------------------------CSSSCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCC-----EEEEEeccCC--------------------------CCCCchHHHHHHHhC
Confidence 567999999999999999988887 7888876532 122456778999999
Q ss_pred CCC-CeeeecCCcchHHHHHHHHHHHHHcCCCCEEEEeecCCCcChHHHHHHhhhhccccccCCCCCCCCcCccCCCCce
Q 011989 209 FQG-PNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDGF 287 (473)
Q Consensus 209 l~G-p~~~v~~acasg~~Al~~A~~~I~~G~~d~vlv~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pfd~~~~G~ 287 (473)
++. +++.+..+|++++.||..|..+|++|..+.+||+++|.++... . +......+
T Consensus 111 l~~~~a~di~~~C~g~~~aL~~A~~~i~~g~~~~~Lvv~~E~~s~~~-----------------------d-~~~~~~~~ 166 (350)
T 4ewp_A 111 ATPAPAYDVSAACAGYCYGVAQADALVRSGTARHVLVVGVERLSDVV-----------------------D-PTDRSISF 166 (350)
T ss_dssp CTTSCEEEEECGGGHHHHHHHHHHHHHHTTSCSEEEEEEEEEGGGGC-----------------------C-TTCTTTGG
T ss_pred CCCceEEEeecchhhHHHHHHHhhhhhhCCCccceeEeeeeeceecc-----------------------c-cccccccc
Confidence 976 7889999999999999999999999999999999999743211 0 11234567
Q ss_pred eeccceEEEEEccchHHHhcCCeEEEEEEEEE--------Ee----------------cCCCCCC------CC--CCCh-
Q 011989 288 VIGEGSGVLVLEELEHAKKRGAKIYAEVRGYG--------MS----------------GDAHHIT------QP--HIDG- 334 (473)
Q Consensus 288 ~~geGaaavvL~~~~~A~~~g~~~~a~i~g~~--------~~----------------~d~~~~~------~~--~~~~- 334 (473)
++||||+|+||+..+.. + +.....+.. .. .+..... .+ ...+
T Consensus 167 lfgDGA~A~vl~~~~~~---~--~~~~~~~sdg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 241 (350)
T 4ewp_A 167 LLGDGAGAVIVAASDEP---G--ISPSVWGSDGERWSTISMTHSQLELRDAVEHARTTGDASAITGAEGMLWPTLRQDGP 241 (350)
T ss_dssp GBCEEEEEEEEEEESSC---C--BCCCEEEECGGGTTSEEESSCHHHHHHHHHHHHHHSCCTTTTTCSSCSSCCEEECHH
T ss_pred ccccchheeeeecccCC---C--ccceeeeecccccceeeecCCccccCcccccccccCCccccccccccccceeEehhH
Confidence 89999999999865421 1 111111110 00 0000000 00 0111
Q ss_pred -------HHHHHHHHHHHHHcCCCCCCccEEEEcCCCCCCCCHHHHHHHHHHhhcccCCCCceeeccccchhhhHHhHHH
Q 011989 335 -------KGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGA 407 (473)
Q Consensus 335 -------~~~~~a~~~al~~agl~~~dId~v~~hgtgt~~~D~~E~~a~~~~~~~~~~~~~~~v~s~k~~~Gh~~~AsG~ 407 (473)
....++++++|+++|++++|||++.+|-.+.. + ..++.+.++... .. .+...-..+||+.+|+=.
T Consensus 242 ~v~~~a~~~~~~~i~~~L~~~gl~~~did~~v~Hq~~~~----i-~~~~~~~Lgl~~--~~-~~~~~l~~~GNtssasi~ 313 (350)
T 4ewp_A 242 SVFRWAVWSMAKVAREALDAAGVEPEDLAAFIPHQANMR----I-IDEFAKQLKLPE--SV-VVARDIADAGNTSAASIP 313 (350)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHTCCGGGEEEEEECCSCHH----H-HHHHHHHTTCCT--TS-EECCTHHHHCBCGGGHHH
T ss_pred HHHHHHHHhhhHHHHHHHHhhcCChhHhceEEecCCCHH----H-HHHHHHHcCcCh--Hh-EEecccccccchHHHHHH
Confidence 12346889999999999999999999944332 2 233444444321 11 122223467999988866
Q ss_pred HHHHHHHHHHHhCccCCCCCCCCCCCCCCCCCCccccCCCCCCcEEEEeccccccceeeEEEe
Q 011989 408 VEAIFAVLAIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPISAALSNSFGFGGTNASLLFT 470 (473)
Q Consensus 408 ~~li~~~~~l~~~~ipp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~g~gG~~~~~vl~ 470 (473)
+.|.. .++.+.+. +-..++..+||-|=+..++||+
T Consensus 314 ~~L~~---~~~~g~~~-------------------------~Gd~vll~~fG~G~t~~~~vlr 348 (350)
T 4ewp_A 314 LAMHR---LLEENPEL-------------------------SGGLALQIGFGAGLVYGAQVVR 348 (350)
T ss_dssp HHHHH---HHHHCGGG-------------------------TTSEEEEEEEETTTEEEEEEEE
T ss_pred HHHHH---HHHhCCCC-------------------------CcCEEEEEEEchhhEeEEEEEE
Confidence 55443 34444321 2235666688876677777776
|
| >3ov2_A Curcumin synthase; type III polyketide synthase, transferase; 2.32A {Curcuma longa} PDB: 3ov3_A | Back alignment and structure |
|---|
Probab=99.74 E-value=2e-17 Score=165.99 Aligned_cols=265 Identities=15% Similarity=0.105 Sum_probs=170.0
Q ss_pred ccCHHHHHHHHHHHHHHHHcCCCCCCCCCCCceeEEEecCCCChhhHHHHHHHHHHhccccCCCcchhhhhhhHHHHHHH
Q 011989 125 SIARFIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVS 204 (473)
Q Consensus 125 ~~~~~~~la~~aa~~Al~dAgl~~~~~~~~~~~gvivg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia 204 (473)
..+....|+.+|+++||+++|+++++++ .|+++++.+ ...+..+.+|+
T Consensus 98 ~~~~~~~La~~Aa~~aL~~ag~~~~dId-----~vi~~t~t~---------------------------~~~p~~a~~v~ 145 (393)
T 3ov2_A 98 VVEEIPRLAKEAAEKAIKEWGRPKSEIT-----HLVFCSISG---------------------------IDMPGADYRLA 145 (393)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSCGGGCC-----EEEEEESSC---------------------------CCBSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCHHHCC-----EEEEEEeCC---------------------------CCCCCHHHHHH
Confidence 3446789999999999999999988887 888888542 11234677899
Q ss_pred HhcCCCCC---eeeecCCcchHHHHHHHHHHHHHcCCCCEEEEeecCCCcChHHHHHHhhhhccccccCCCCCCCCcCcc
Q 011989 205 MKYGFQGP---NHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFD 281 (473)
Q Consensus 205 ~~lgl~Gp---~~~v~~acasg~~Al~~A~~~I~~G~~d~vlv~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pfd 281 (473)
..||+++. ++.+..+|++++.||..|.++|++|.++.|||+|+|.++..+. . +.. +.++
T Consensus 146 ~~LGl~~~~~~~~~v~~~C~g~~~al~~A~~~i~sg~~~~vLvvg~E~~s~~~~----------~------~~d--~~~~ 207 (393)
T 3ov2_A 146 TLLGLPLTVNRLMIYSQACHMGAAMLRIAKDLAENNRGARVLVVACEITVLSFR----------G------PNE--GDFE 207 (393)
T ss_dssp HHHTCCTTSEEEEEESCCTTHHHHHHHHHHHHHHHSTTCEEEEEEEECGGGTCC----------C------CCT--TCHH
T ss_pred HHcCCCCCcceeeEEcCccHHHHHHHHHHHHHHHcCCCCEEEEEEEeccchhcc----------C------Ccc--cchh
Confidence 99999874 6899999999999999999999999999999999998532110 0 000 0011
Q ss_pred CCCCceeeccceEEEEEccchHHHhcCCeEEEEEEEEEEec--CCCC------------CCCCCCCh-----HHHHHHHH
Q 011989 282 CGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSG--DAHH------------ITQPHIDG-----KGAILAMT 342 (473)
Q Consensus 282 ~~~~G~~~geGaaavvL~~~~~A~~~g~~~~a~i~g~~~~~--d~~~------------~~~~~~~~-----~~~~~a~~ 342 (473)
.....+++||||+|+||++.+... .....+ ++...+... +... ... +... ..+..+++
T Consensus 208 ~~~~~~lFGDGAaA~vl~~~~~~~-~~~~~~-~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~-~~~v~~~~~~~~~~~i~ 284 (393)
T 3ov2_A 208 ALAGQAGFGDGAGAVVVGADPLEG-IEKPIY-EIAAAMQETVAESQGAVGGHLRAFGWTFYF-LNQLPAIIADNLGRSLE 284 (393)
T ss_dssp HHHHHHHBCCEEEEEEEESSCCTT-TCCCSE-EEEEEEEEECTTCTTSEEEEEETTEEEEEE-CTTHHHHHHTTSHHHHH
T ss_pred hhcccccccCccEEEEEEecCCCc-ccCcee-EEEecCcEEecCCcccCceeeeCCceEEEE-CcHHHHHHHHHHHHHHH
Confidence 112467799999999998754321 011122 232222111 1000 000 0111 11346889
Q ss_pred HHHHHcCCCC-CCccEEEEcCCCCCCCCHHHHHHHHHHhhcccCCCCceee-ccccchhhhHHhHHHHHHHHHHHH-HHh
Q 011989 343 RALKQSGLQS-HQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFS-STKGAIGHLLGAAGAVEAIFAVLA-IHH 419 (473)
Q Consensus 343 ~al~~agl~~-~dId~v~~hgtgt~~~D~~E~~a~~~~~~~~~~~~~~~v~-s~k~~~Gh~~~AsG~~~li~~~~~-l~~ 419 (473)
++|+++|+++ +|| ++.+|- .|-.+ ..++.+.++... .+++.+ .+-..+||+.+|+=.+.|-.++.. ++.
T Consensus 285 ~~L~~~gl~~~~di-~~v~Hq----~n~~i-~~~v~~~Lgl~~--ek~~~s~~~l~~~GNtssAsip~~L~~~~~~~~~~ 356 (393)
T 3ov2_A 285 RALAPLGVREWNDV-FWVAHP----GNWAI-IDAIEAKLQLSP--DKLSTARHVFTEYGNMQSATVYFVMDELRKRSAVE 356 (393)
T ss_dssp HHHGGGTCCSGGGS-EEEECC----CCHHH-HHHHHHHHTCCT--TTTHHHHHHHHHHCBCGGGHHHHHHHHHHHHHHHT
T ss_pred HHHHHcCCCcccCc-EEEECC----CChHH-HHHHHHHcCCCH--HHHHHHHHHHHHhCChHHhHHHHHHHHHHHhhhhc
Confidence 9999999997 888 899993 33333 344555555432 223321 234578999999877766655543 222
Q ss_pred CccCCCCCCCCCCCCCCCCCCccccCCCCCCcEEEEeccccccceeeEEEeec
Q 011989 420 GVAPLTLNLAKPDPIFNDNFMPLTASKDMPISAALSNSFGFGGTNASLLFTKC 472 (473)
Q Consensus 420 ~~ipp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~g~gG~~~~~vl~~~ 472 (473)
|.+.| ..+...++..+||-|-+..+++|++.
T Consensus 357 g~~~~----------------------G~~~d~vll~~fG~G~t~~~~ll~~~ 387 (393)
T 3ov2_A 357 GRSTT----------------------GDGLQWGVLLGFGPGLSIETVVLRSM 387 (393)
T ss_dssp TCSBT----------------------TTTCSEEEEEEEETTTEEEEEEEEEC
T ss_pred CCcCC----------------------CCCCCeEEEEEECccceeeeeeeEEc
Confidence 33211 01125677779999999999999864
|
| >2f82_A HMG-COA synthase; HMGS1, transferase; 2.10A {Brassica juncea} PDB: 2f9a_A* 2fa0_A* 2fa3_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=9.4e-17 Score=163.89 Aligned_cols=181 Identities=14% Similarity=0.126 Sum_probs=127.7
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCceeEEEecCCCChhhHHHHHHHHHHhccccCCCcchhhhhhhHHHHHHHHhcC
Q 011989 129 FIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYG 208 (473)
Q Consensus 129 ~~~la~~aa~~Al~dAgl~~~~~~~~~~~gvivg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lg 208 (473)
...|+++|+++||+++|+++++++ .|++++..+. ...+..+..|+..||
T Consensus 52 ~~~La~~Aa~~aL~~agi~~~~Id-----~li~~t~t~~--------------------------~~~p~~a~~v~~~lg 100 (450)
T 2f82_A 52 VISMSFNAVTSLLEKYKIDPKQIG-----RLEVGSETVI--------------------------DKSKSIKTFLMQLFE 100 (450)
T ss_dssp HHHHHHHHHHHHHHHTTCCGGGEE-----EEEEECCCCS--------------------------CSSSCHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHcCcCHHHCC-----EEEEEecCCC--------------------------CCCCcHHHHHHHHhC
Confidence 578999999999999999776665 6667775421 112345678888888
Q ss_pred C---C-CCeeeecCCcchHHHHHHHHHHHHHcCCC--CEEEEeecCCCcChHHHHHHhhhhccccccCCCCCCCCcCccC
Q 011989 209 F---Q-GPNHAAVTACATGAHSIGDAARMIQFGDS--DVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDC 282 (473)
Q Consensus 209 l---~-Gp~~~v~~acasg~~Al~~A~~~I~~G~~--d~vlv~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pfd~ 282 (473)
+ + .+++.+..+|+|++.||..|.++|++|.+ +.|||+|+|.+. ++.
T Consensus 101 l~g~~~~~~~~v~~aC~gg~~AL~~A~~~I~sg~~~~~~vLVvg~e~~~----------------------------~~~ 152 (450)
T 2f82_A 101 KCGNTDVEGVDSTNACYGGTAALLNCVNWVESNSWDGRYGLVICTDSAV----------------------------YAE 152 (450)
T ss_dssp TTTCCCCBCCEECSGGGHHHHHHHHHHHHHHSTTCCSCEEEEEEEEEEC----------------------------CSS
T ss_pred CcCCCCceEEEhhhhhHHHHHHHHHHHHHHHcCCCcCCeEEEEEeeecc----------------------------ccC
Confidence 8 3 48899999999999999999999999998 999999999742 111
Q ss_pred CCCceeeccceEEEEEccchHHHhcCCeEEEEEEEEEEecCCCCCC-------CCCCChH--------HHHHHHHHHHH-
Q 011989 283 GRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHIT-------QPHIDGK--------GAILAMTRALK- 346 (473)
Q Consensus 283 ~~~G~~~geGaaavvL~~~~~A~~~g~~~~a~i~g~~~~~d~~~~~-------~~~~~~~--------~~~~a~~~al~- 346 (473)
.....++||||+|+||++.+. . .+.....|.... +-.+.. .|...+. .+..+++++++
T Consensus 153 ~~~~~~fGDGA~A~ll~~~~~----~-~~~~~~~g~~~~-~~~d~~~p~~~~~~~~~~G~~~~~~~~~~l~~~~~~~l~~ 226 (450)
T 2f82_A 153 GPARPTGGAAAIAMLIGPDAP----I-VFESKLRGSHMA-HVYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKHLCNK 226 (450)
T ss_dssp STTGGGCEEEEEEEEEESSCS----E-EEEEEEEEEEEC-CCCSEECCCTTCSCCEECHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCcccccceEEEEeccCCc----e-EEEeccceeehh-hccceeeeCCCCCceeecCccHHHHHHHHHHHHHHHHHHH
Confidence 235678999999999986542 1 121122333222 111111 1222222 24467778886
Q ss_pred -----HcCCCCCCccEEEEcCCCCCCCCHHHHH
Q 011989 347 -----QSGLQSHQVDYVNAHATSTPLGDTVEAT 374 (473)
Q Consensus 347 -----~agl~~~dId~v~~hgtgt~~~D~~E~~ 374 (473)
++|++++|||++.+|..+++..+.+...
T Consensus 227 ~~~~~~agl~~~did~~v~Hq~~~~i~~~~~~~ 259 (450)
T 2f82_A 227 FEKLEGKEFSINDADYFVFHSPYNKLVQKSFAR 259 (450)
T ss_dssp HHHHHSSCCCGGGCSEEEECCSSHHHHHHHHHH
T ss_pred hhhccccCCChhhcCEEEecCChHHHHHHHHHH
Confidence 8999999999999999888876665443
|
| >3oit_A OS07G0271500 protein; type III polyketide synthases, transferase; 2.00A {Oryza sativa} PDB: 3ale_A | Back alignment and structure |
|---|
Probab=99.68 E-value=3.2e-16 Score=156.88 Aligned_cols=263 Identities=13% Similarity=0.101 Sum_probs=161.3
Q ss_pred ccCHHHHHHHHHHHHHHHHcCCCCCCCCCCCceeEEEecCCCChhhHHHHHHHHHHhccccCCCcchhhhhhhHHHHHHH
Q 011989 125 SIARFIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVS 204 (473)
Q Consensus 125 ~~~~~~~la~~aa~~Al~dAgl~~~~~~~~~~~gvivg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia 204 (473)
.++....|+.+|+++||++||+++++++ .|+++++.+ + ..+..+.+|+
T Consensus 92 ~~~~~~~La~~Aa~~AL~~ag~~~~dId-----~li~~t~t~----------------------~-----~~p~~a~~v~ 139 (387)
T 3oit_A 92 AADAVPELAAEAAKKAIAEWGRPAADIT-----HLVVTTNSG----------------------A-----HVPGVDFRLV 139 (387)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSCGGGCC-----EEEEEESSC----------------------C-----EESCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCHHHCC-----EEEEEeeCC----------------------C-----CcccHHHHHH
Confidence 3346789999999999999999988887 888887542 1 1234677899
Q ss_pred HhcCCCCC---eeeecCCcchHHHHHHHHHHHHHcCCCCEEEEeecCCCcChHHHHHHhhhhccccccCCCCCCCCcCcc
Q 011989 205 MKYGFQGP---NHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFD 281 (473)
Q Consensus 205 ~~lgl~Gp---~~~v~~acasg~~Al~~A~~~I~~G~~d~vlv~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pfd 281 (473)
..||+++. .+.+..+|++++.||..|.++|++|.++.|||+|+|.++..+. . ++. +.++
T Consensus 140 ~~LGl~~~~~~~~~~~~~C~~~~~al~~A~~~i~sg~~~~vLvvg~E~~s~~~~----------~------~~d--~~~~ 201 (387)
T 3oit_A 140 PLLGLRPSVRRTMLHLNGCFAGCAALRLAKDLAENSRGARVLVVAAELTLMYFT----------G------PDE--GCFR 201 (387)
T ss_dssp HHHTCCTTCEEEEEECCGGGHHHHHHHHHHHHHHSSTTCEEEEEEEECGGGTCC----------C------CCS--SSCH
T ss_pred HHhCCCCCcceeeEECchhHHHHHHHHHHHHHHhcCCCCEEEEEEEeccchhcc----------C------ccc--cchH
Confidence 99999873 6899999999999999999999999999999999998531110 0 000 0011
Q ss_pred CCCCceeeccceEEEEEccchHHHhcCCeEEEEEEEEEEecCCC--C------------CC-CCCC---ChHHHHHHHHH
Q 011989 282 CGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAH--H------------IT-QPHI---DGKGAILAMTR 343 (473)
Q Consensus 282 ~~~~G~~~geGaaavvL~~~~~A~~~g~~~~a~i~g~~~~~d~~--~------------~~-~~~~---~~~~~~~a~~~ 343 (473)
.....+++||||+|+||+..+. .......++.+.+....+. . .. .... ....+..++++
T Consensus 202 ~~~~~~lFGDGAaA~vl~~~~~---~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~~v~~~~~~~~~~~~~~ 278 (387)
T 3oit_A 202 TLLVQGLFGDGAAAVIVGADAD---DVERPLFEIVSAAQTIIPESDHALNMRFTERRLDGVLGRQVPGLIGDNVERCLLD 278 (387)
T ss_dssp HHHHHHHBCCEEEEEEEESSCC---SSCCCCEEEEEEEEEECTTCTTSEEEEECSSSEEEEECTTHHHHHHHHHHHHHHH
T ss_pred hhhcccccccceEEEEEecCCC---cccCCceEEEecccEEeCCChhhccceeecCCeEEEECcHHHHHHHHHHHHHHHH
Confidence 1123678999999999987541 1111223444433221110 0 00 0110 01334567888
Q ss_pred HHHHc----CCCCCCcc--EEEEcCCCCCCCCHHHHHHHHHHhhcccCCCCceee-ccccchhhhHHhHHHHHHHHHHHH
Q 011989 344 ALKQS----GLQSHQVD--YVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFS-STKGAIGHLLGAAGAVEAIFAVLA 416 (473)
Q Consensus 344 al~~a----gl~~~dId--~v~~hgtgt~~~D~~E~~a~~~~~~~~~~~~~~~v~-s~k~~~Gh~~~AsG~~~li~~~~~ 416 (473)
+|+++ |++ |+| ++.+|-.+.. + ..++.+.++... .++..+ .+-..+||+.+|+=.+.|-.+
T Consensus 279 ~L~~~~~~~gl~--d~d~~~~v~Hq~n~~----i-l~~v~~~Lgl~~--ek~~~s~~~l~~~GNtssAsip~~L~~~--- 346 (387)
T 3oit_A 279 MFGPLLGGDGGG--GWNDLFWAVHPGSST----I-MDQVDAALGLEP--GKLAASRRVLSDYGNMSGATVIFALDEL--- 346 (387)
T ss_dssp HTGGGCC--------GGGSEEEECCCCHH----H-HHHHHHHHTCCT--TTTHHHHHHHHHHCBCGGGHHHHHHHHH---
T ss_pred HHHhhcccCCCC--cccccEEEECCCCHH----H-HHHHHHHcCCCH--HHHHHHHHHHHHhCchHHhHHHHHHHHH---
Confidence 88898 987 666 9999943332 2 334444455332 123322 234568999988866655442
Q ss_pred HHhCccCCCCCCCCCCCCCCCCCCccccCCCCCCcEEEEeccccccceeeEEEeec
Q 011989 417 IHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPISAALSNSFGFGGTNASLLFTKC 472 (473)
Q Consensus 417 l~~~~ipp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~g~gG~~~~~vl~~~ 472 (473)
+++.+.+ .. ...+...++..+||-|-+..++||++.
T Consensus 347 -~~~~~~~------------------G~-~g~~~d~vll~~fG~G~t~~~~ll~~~ 382 (387)
T 3oit_A 347 -RRQRKEA------------------AA-AGEWPELGVMMAFGPGMTVDAMLLHAT 382 (387)
T ss_dssp -HHC-----------------------------CCEEEEEEEETTTEEEEEEEEEC
T ss_pred -HHhhhcc------------------CC-CCCCCCEEEEEEecccceeeeeeeEec
Confidence 2222211 00 001124677779999999999999874
|
| >3e1h_A PKSIIINC, putative uncharacterized protein; resorcinolic lipid synthase, type III PKS, acyltransferase, transferase; 2.58A {Neurospora crassa} | Back alignment and structure |
|---|
Probab=99.67 E-value=2.1e-15 Score=153.39 Aligned_cols=263 Identities=12% Similarity=0.059 Sum_probs=161.9
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCceeEEEecCCCChhhHHHHHHHHHHhccccCCCcchhhhhhhHHHHHHHHhcC
Q 011989 129 FIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYG 208 (473)
Q Consensus 129 ~~~la~~aa~~Al~dAgl~~~~~~~~~~~gvivg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lg 208 (473)
...|+.+|+++||++||+++++++ .||++++++. ..+..+.+|+..||
T Consensus 110 a~~La~~Aa~~AL~~agi~~~dId-----~li~~t~t~~---------------------------~~P~~a~~v~~~LG 157 (465)
T 3e1h_A 110 GVPLAVEASRKAMAEARLVPAQIT-----HMVSTTCTDS---------------------------ANPGYDHYVAKELG 157 (465)
T ss_dssp THHHHHHHHHHHHHHHTCCGGGCC-----EEEEECSSCC---------------------------CSSCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCC-----EEEEEeeCCC---------------------------CCCcHHHHHHHHhC
Confidence 358999999999999999988887 8888875421 12345778999999
Q ss_pred CCC-C-eeee-cCCcchHHHHHHHHHHHHHc----CCCCEEEEeecCCCcChHHHHHHhhhhccccccCCCCCCCCcCcc
Q 011989 209 FQG-P-NHAA-VTACATGAHSIGDAARMIQF----GDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFD 281 (473)
Q Consensus 209 l~G-p-~~~v-~~acasg~~Al~~A~~~I~~----G~~d~vlv~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pfd 281 (473)
++. + .+.| ..+|++++.||..|.++|++ |.++.|||+++|.++...... ...... ..+
T Consensus 158 l~~~~~~~dv~~~~Csgg~~AL~~A~~~i~a~~~~G~~~~vLVvg~E~~S~~~~~~-~~~~~~--------------~~~ 222 (465)
T 3e1h_A 158 LSDRLEKVLLHGIGCSGGLAALRTAANLCLGHTARGKPARILVLALEVSTTMVRSE-LESIDA--------------LQE 222 (465)
T ss_dssp CCTTCEEEEECSCGGGHHHHHHHHHHHHHHHHHHTTCCCEEEEEEEECCGGGHHHH-HHHHHH--------------HTC
T ss_pred CCCCeeEEEecCCcchHHHHHHHHHHHHHhcccccCCCCEEEEEEEeecchhcCcc-cccccc--------------ccc
Confidence 987 4 5888 79999999999999999997 999999999999865433221 100000 011
Q ss_pred CCCCceeeccceEEEEEccchHHHhcCCeEEEEEEEEEEecCCCCCC---------------CCCC---ChHHHHHHHHH
Q 011989 282 CGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHIT---------------QPHI---DGKGAILAMTR 343 (473)
Q Consensus 282 ~~~~G~~~geGaaavvL~~~~~A~~~g~~~~a~i~g~~~~~d~~~~~---------------~~~~---~~~~~~~a~~~ 343 (473)
.....+++||||+|+||+..+... .....+..+.++.....+.... .+.. ....+..++++
T Consensus 223 d~~t~~LFGDGAaAvVl~~~~~~~-~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~g~~~~~g~~V~~~a~~~v~~~i~~ 301 (465)
T 3e1h_A 223 TRIGIALFSDCASAVILSNGIGEA-PGKPAIYDLLGWENRVIPDSEHDLGFDVDPMGWKVVLSPRVPVLAKASLQPTYAD 301 (465)
T ss_dssp CCCHHHHBCCEEEEEEEECCTTCC-TTCCCSEEEEEEEEEECTTCTTTEEEEEETTEEEEEECTTHHHHHHHHHHHHHHH
T ss_pred ccccccccccceeEEEEEccCCCc-cccccceeeccceEEEecCCccccCccccCCCceEecChHHHHHHHHHHHHHHHH
Confidence 233467899999999998754211 0011223455543322211100 0000 01334567888
Q ss_pred HHHH-------cCCCCCCccEEEEcCCCCCCCCHHHHHHHHHHhhcccCCCCceee-ccccchhhhHHhHHHHHHHHHHH
Q 011989 344 ALKQ-------SGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFS-STKGAIGHLLGAAGAVEAIFAVL 415 (473)
Q Consensus 344 al~~-------agl~~~dId~v~~hgtgt~~~D~~E~~a~~~~~~~~~~~~~~~v~-s~k~~~Gh~~~AsG~~~li~~~~ 415 (473)
+|++ +|++++||||+ +|- .|-.+ ..++.+.++... .++..+ ..-..+||+.+|+=.+.|-.
T Consensus 302 ~L~~~g~~L~~agl~~~DId~~-~Hq----an~rI-l~~v~~~Lgl~~--ek~~~s~~~l~~yGNtsSASip~aL~~--- 370 (465)
T 3e1h_A 302 LLSSLQDQLPSSYQKPADFDWA-MHP----GGATI-LSGAESAMGLTP--EHMRASYDRYINHGNSSSATIFSVLNR--- 370 (465)
T ss_dssp HHHHHGGGSCTTSCSGGGSEEE-ECC----SSHHH-HHHHHHHHTCCG--GGGHHHHHHHHHHCBCGGGHHHHHHHH---
T ss_pred HHHhccccccccCCCHHHceEE-ecC----CChHH-HHHHHHHhCcCH--HHhHHHHHHHhcceechHhHHHHHHHH---
Confidence 8887 67999999998 993 33332 334444454322 112211 11124589888875544332
Q ss_pred HHHh--CccCCCCCCCCCCCCCCCCCCccccCCCCCCcEEEEeccccccceeeEEEee
Q 011989 416 AIHH--GVAPLTLNLAKPDPIFNDNFMPLTASKDMPISAALSNSFGFGGTNASLLFTK 471 (473)
Q Consensus 416 ~l~~--~~ipp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~g~gG~~~~~vl~~ 471 (473)
.++. +.+.|. ......++..+||-|=+..++||+.
T Consensus 371 ~~~~~~g~l~~G---------------------g~~~d~vll~gfG~Glt~~~~llr~ 407 (465)
T 3e1h_A 371 LREKDMDALAPG---------------------GKVKEYVVGCAFGPGINVEMCMLKR 407 (465)
T ss_dssp HTSTTTTSCSSS---------------------SCCCSEEEEEEEETTTEEEEEEEEE
T ss_pred HHHhcccccCCC---------------------CCCCCEEEEEEEhHHHhhhheeeEE
Confidence 2232 222110 0122567777999888888888874
|
| >3v4n_A HMG-COA synthase; hydroxymethylglutaryl-COA synthase, nitrosylation, transfera inhibitor complex; HET: BTB; 1.60A {Enterococcus faecalis} PDB: 3v4x_A* 1x9e_A 1ysl_B* 1ysl_A* 2hdb_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=7.2e-16 Score=154.06 Aligned_cols=215 Identities=14% Similarity=0.106 Sum_probs=137.3
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCceeEEEecCCCChhhHHHHHHHHHHhccccCCCcchhhhhhhHHHHHHHHhcC
Q 011989 129 FIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYG 208 (473)
Q Consensus 129 ~~~la~~aa~~Al~dAgl~~~~~~~~~~~gvivg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lg 208 (473)
...|+.+|+++||+++| +++++ .|++++..+.. ..+..+..|+..||
T Consensus 56 ~~~La~~Aa~~aL~~a~--~~~Id-----~li~~t~t~~~--------------------------~~ps~a~~v~~~LG 102 (388)
T 3v4n_A 56 IVTFAANAAEAILTKED--KEAID-----MVIVGTESSID--------------------------ESKAAAVVLHRLMG 102 (388)
T ss_dssp HHHHHHHHHHTTCCHHH--HHHEE-----EEEEECSSCSB--------------------------SSSCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhCC--cccCC-----EEEEEeccCCC--------------------------cCccHHHHHHHHcC
Confidence 57899999999999997 55665 77888754321 12345778999999
Q ss_pred CCC--CeeeecCCcchHHHHHHHHHHHHHcCCCCEEEEeecCCCcChHHHHHHhhhhccccccCCCCCCCCcCccCCCCc
Q 011989 209 FQG--PNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDG 286 (473)
Q Consensus 209 l~G--p~~~v~~acasg~~Al~~A~~~I~~G~~d~vlv~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pfd~~~~G 286 (473)
+++ +++.+..+|++++.||..|..+|++|.++.|||+++|.+... ++ ..+.
T Consensus 103 l~~~~~~~dv~~aC~gg~~AL~~A~~~i~sg~~~~vLVvg~e~~s~~--------------------------~~-~~~~ 155 (388)
T 3v4n_A 103 IQPFARSFEIKEAXYGATAGLQLAKNHVALHPDKKVLVVAADIAKYG--------------------------LN-SGGE 155 (388)
T ss_dssp CCSSCEEEEEESGGGHHHHHHHHHHHHHHHCTTCEEEEEEEEEECCC--------------------------TT-CTTG
T ss_pred CCCCceEeehhhhhhHHHHHHHHHHHHHhcCCCCEEEEEEehhhccc--------------------------CC-CCCC
Confidence 975 788999999999999999999999999999999999974321 11 1225
Q ss_pred eeeccceEEEEEccchHHHhcCCeEEEE-EEEEEEecCCCCCCC------CCCCh--------HHHHHHHHHHHHHcCCC
Q 011989 287 FVIGEGSGVLVLEELEHAKKRGAKIYAE-VRGYGMSGDAHHITQ------PHIDG--------KGAILAMTRALKQSGLQ 351 (473)
Q Consensus 287 ~~~geGaaavvL~~~~~A~~~g~~~~a~-i~g~~~~~d~~~~~~------~~~~~--------~~~~~a~~~al~~agl~ 351 (473)
.++||||+|+||++.+ .+... ....+...+....-. +...+ ..+..+++++|+++|++
T Consensus 156 ~lfGDGA~A~ll~~~~-------~il~~~~~~~~~~~~~~df~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~g~~ 228 (388)
T 3v4n_A 156 PTQGAGAVAMLVSSEP-------RILALKEDNVMLTQDIYDFWRPTGHPYPMVDGPLSNETYIQSFAQVWDEHKKRTGLD 228 (388)
T ss_dssp GGCEEEEEEEEEEESC-------SSEEECSCCEEEECCCCSEECBTTCSSCEECHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred CccccceeEEEeecCC-------CceEEeccccccchhccccccCCCCCCceeccHhHHHHHHHHHHHHHHHHHHHhCCC
Confidence 7799999999998742 11111 011111112111001 11111 33556889999999999
Q ss_pred CCCccEEEEcCCCCCCCCHHHH-------HHHHHHhhcccCCCCceeeccccchhhhHHhHHHHHHHHHH
Q 011989 352 SHQVDYVNAHATSTPLGDTVEA-------TAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAV 414 (473)
Q Consensus 352 ~~dId~v~~hgtgt~~~D~~E~-------~a~~~~~~~~~~~~~~~v~s~k~~~Gh~~~AsG~~~li~~~ 414 (473)
++|||++..|-..+...-+.-. ..+.+-++... . .+...-..+||+.+|+=.+.|..++
T Consensus 229 ~~did~~v~Hqp~~k~~~ka~~ril~~~~~~~~~~l~~~~--e--~~~~~~~~~GN~~sASi~l~L~~~l 294 (388)
T 3v4n_A 229 FADYDALAFHIPYTKMGKKALLAKISDQTEAEQERILARY--E--ESIIYSRRVGNLYTGSLYLGLISLL 294 (388)
T ss_dssp GGGCSEEEECCSSHHHHHHHHHHHSTTSCHHHHHHHHHHH--H--HHTTTGGGTCCCGGGHHHHHHHHHH
T ss_pred HHHCCEEEeCCCcchHHHHHHHHHHhcccHHHHHHhCCCH--H--HHhhHHHhcCchHHHHHHHHHHHHH
Confidence 9999999999432221100000 11222222110 0 1122445789999998766555443
|
| >3v7i_A Putative polyketide synthase; type III polyketide synthase, acyltransferase, transferase,; 2.90A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=99.62 E-value=2.2e-14 Score=144.04 Aligned_cols=242 Identities=17% Similarity=0.033 Sum_probs=158.4
Q ss_pred CHHHHHHHHHHHHHHHHcCCCCCCCCCCCceeEEEecCCCChhhHHHHHHHHHHhccccCCCcchhhhhhhHHHHHHHHh
Q 011989 127 ARFIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMK 206 (473)
Q Consensus 127 ~~~~~la~~aa~~Al~dAgl~~~~~~~~~~~gvivg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~ 206 (473)
.....|+.+|+++||+++|+++++++ .|+++++.+. ..+..+.+|+..
T Consensus 135 ~~~~~La~~Aa~~AL~~agi~~~dId-----~li~~t~t~~---------------------------~~P~~a~~v~~~ 182 (413)
T 3v7i_A 135 EAVQAYGERAARGALQIAGLDVADVD-----CLITSNSTTP---------------------------ALPGLDVALANR 182 (413)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCGGGCC-----EEEEECCSSC---------------------------CSSCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHhCcCHHHCC-----EEEEEccCCC---------------------------CcCHHHHHHHHH
Confidence 35678999999999999999988887 8888886521 123456789999
Q ss_pred cCCCC--Ceeee-cCCcchHHHHHHHHHHHHHcCCCCEEEEeecCCCcChHHHHHHhhhhccccccCCCCCCCCcCccCC
Q 011989 207 YGFQG--PNHAA-VTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCG 283 (473)
Q Consensus 207 lgl~G--p~~~v-~~acasg~~Al~~A~~~I~~G~~d~vlv~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pfd~~ 283 (473)
+|+++ +.+.+ ..+|++++.||..|.++|++|.++.|||+|+|.++... . ++.+
T Consensus 183 LGl~~~~~~~~v~~~~Cagg~~AL~~A~~~i~ag~~~~vLvvg~E~~S~~~-----------------------~-~~d~ 238 (413)
T 3v7i_A 183 LPLRGDTMLLPATQWACVAGTRSLALAADLVAADPDRVVLVVISEALSTTY-----------------------Q-PADD 238 (413)
T ss_dssp TTCCTTCEEEEESSCGGGHHHHHHHHHHHHHHHCTTCEEEEEEEECGGGGC-----------------------C-SSCC
T ss_pred hCCCCCceEEEeeCCccHHHHHHHHHHHHHHhcCCCCEEEEEEEecccccc-----------------------C-cccc
Confidence 99986 35677 89999999999999999999999999999999853321 0 1111
Q ss_pred CC-----ceeeccceEEEEEccchHHHhcCCeEEEEEEEEEEecCCCCCC-------------CCCC----ChHHHHHHH
Q 011989 284 RD-----GFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHIT-------------QPHI----DGKGAILAM 341 (473)
Q Consensus 284 ~~-----G~~~geGaaavvL~~~~~A~~~g~~~~a~i~g~~~~~d~~~~~-------------~~~~----~~~~~~~a~ 341 (473)
.. ..++||||+|+||++.+.. ... .++.+......+.... ..+. .......++
T Consensus 239 ~~~~lv~~~LFGDGAaAvvl~~~~~~----~~~-~~l~~~~~~~~p~~~~~~~~~~~~~g~~~~m~~~v~~~v~~~~~~i 313 (413)
T 3v7i_A 239 TLESLIVRLLFADTAVAAVVTGRPRP----ESV-LRLDAAWHHTLPGTRDLHRLETRADGTHFVMDRRGPRAVQETVTAM 313 (413)
T ss_dssp STTHHHHHHHBCCEEEEEEEESSCCT----TEE-EEEEEEEEEECTTCTTSEEEEEETTEEEEEECTTHHHHHHHHHHHH
T ss_pred chhhhhcceeeccccEEEEEEecCCC----CCC-EEEEccccEEeCCCccccCccccCCceEEEECcHHHHHHHHHHHHH
Confidence 22 5679999999999875421 111 2444443221111000 0000 012245678
Q ss_pred HHHHH------HcCCCCCCccEEEEcCCCCCCCCHHHHHHHHHHhh--cccCCCCce--eeccccchhhhHHhHHHHHHH
Q 011989 342 TRALK------QSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFS--DHATSGSLA--FSSTKGAIGHLLGAAGAVEAI 411 (473)
Q Consensus 342 ~~al~------~agl~~~dId~v~~hgtgt~~~D~~E~~a~~~~~~--~~~~~~~~~--v~s~k~~~Gh~~~AsG~~~li 411 (473)
+++|+ ++|++ ||++.+|-.+. .+ ..++.+.++ ... .++. .... . +||+.+|+=.+.|-
T Consensus 314 ~~~L~~~~~~~~~gl~---id~~v~Hq~~~----~i-l~~v~~~Lg~~l~~--ek~~~s~~~l-~-~GNtssAsi~~~L~ 381 (413)
T 3v7i_A 314 WEWLRVRYEDDPSSWH---PDVLLAHPGGT----RV-LEYMEQTMPDEWPS--GLLSYSRDSY-T-SGNRGGAAVFDILR 381 (413)
T ss_dssp HHHHHHHTSSSCTTCC---CCEEEEECSSH----HH-HHHHHHHSCSSCCS--CSTHHHHHHH-T-TCBCGGGHHHHHHH
T ss_pred HHHHhhccccccCCCc---eeEEEECCCCh----HH-HHHHHHHhCCCCCH--HHhhccceEe-c-eeChHHHHHHHHHH
Confidence 88999 89987 99999994433 22 344455555 321 2221 2333 4 89999998666555
Q ss_pred HHHHHHHhCccCCCCCCCCCCCCCCCCCCccccCCCCCCcEEEEeccccccceeeEEEe
Q 011989 412 FAVLAIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPISAALSNSFGFGGTNASLLFT 470 (473)
Q Consensus 412 ~~~~~l~~~~ipp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~g~gG~~~~~vl~ 470 (473)
.++ +. .+. +-..++..+||-|=+..+++|+
T Consensus 382 ~~~---~~-~~~-------------------------~Gd~vll~~fG~Glt~~~~ll~ 411 (413)
T 3v7i_A 382 RAH---DA-GQK-------------------------TGSRAVLYAAAPGLTATALEGE 411 (413)
T ss_dssp HHH---HH-CCC-------------------------TTCEEEEEEEETTTEEEEEEEE
T ss_pred HHH---hC-CCC-------------------------CCCEEEEEEECHHHhHhhhheE
Confidence 443 22 211 1245666789987777777775
|
| >3lma_A Stage V sporulation protein AD (spovad); NESG, structural genomics, PSI-2, protein structure initiative; 1.99A {Bacillus licheniformis} PDB: 3lm6_A | Back alignment and structure |
|---|
Probab=99.62 E-value=3.4e-14 Score=136.77 Aligned_cols=188 Identities=17% Similarity=0.152 Sum_probs=123.3
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCceeEEEecCCCChhhHHHHHHHHHHhccccCCCcchhhhhhhHHHHHHHHhcC
Q 011989 129 FIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYG 208 (473)
Q Consensus 129 ~~~la~~aa~~Al~dAgl~~~~~~~~~~~gvivg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lg 208 (473)
...|+.+|+++||++||++++|++ .|++|+.... . ..+..++..++
T Consensus 55 ~sdLa~~Aa~~AL~~AGi~~~DID-----~II~gt~t~q----------------------~-------~~A~~va~~Lg 100 (347)
T 3lma_A 55 ERKLMEDAVQSALSKQNLKKEDID-----IFLAGDLLNQ----------------------N-------VTANYVARHLK 100 (347)
T ss_dssp HHHHHHHHHHHHHHTTTCCGGGCS-----EEEEEESSSS----------------------S-------TTHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCC-----EEEEEeCCCc----------------------h-------hHHHHHHHHhC
Confidence 468999999999999999999888 8888874421 0 13445666675
Q ss_pred CCCCeeeecCCcchHHHHHHHHHHHHHcCCCCEEEEeecCCCcChHHHHHHhhhhccccccCCCCCCCCcCccCCCCcee
Q 011989 209 FQGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDGFV 288 (473)
Q Consensus 209 l~Gp~~~v~~acasg~~Al~~A~~~I~~G~~d~vlv~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pfd~~~~G~~ 288 (473)
+ |.+.|+++|+|++.||..|..+|++|.++.|||+|+|.++.......+.. ..+..+|. .-..
T Consensus 101 i--pafdV~~ACsg~~~AL~~Aa~~I~sG~~~~VLVVGaE~~S~aerq~r~p~-----------e~g~q~p~----ta~~ 163 (347)
T 3lma_A 101 I--PFLCLFGACSTSMESIAISSALIDGGFAKRALAATSSHNATAERQFRYPT-----------EYGGQKPG----TATS 163 (347)
T ss_dssp C--CEEEBCCSTTHHHHHHHHHHHHHHTTSCSEEEEEEEECGGGTTCCC-------------------------------
T ss_pred C--CEEEecChhHHHHHHHHHHHHHHhcCCCCEEEEEEeccccchhhhccCcc-----------hhcccCCc----hhcE
Confidence 4 89999999999999999999999999999999999998654321000000 00111111 1233
Q ss_pred eccceEEEEEccchHHHhcCCeEEEEEEEEEE--ecCCCCCCCCCCCh----HHHHHHHHHHHHHcCCCCCCccEEEEcC
Q 011989 289 IGEGSGVLVLEELEHAKKRGAKIYAEVRGYGM--SGDAHHITQPHIDG----KGAILAMTRALKQSGLQSHQVDYVNAHA 362 (473)
Q Consensus 289 ~geGaaavvL~~~~~A~~~g~~~~a~i~g~~~--~~d~~~~~~~~~~~----~~~~~a~~~al~~agl~~~dId~v~~hg 362 (473)
.+|||+|+||++.. ..+ +|.+... ..| .....|...+ ++....+.+.|+++|++|+|+|+|..+
T Consensus 164 t~dGAGA~VL~~~g------~~p--~I~~~t~Gkvvd-~g~~d~~nmg~amaPaA~~ti~~~l~d~g~~~~d~D~ivtg- 233 (347)
T 3lma_A 164 TVTGSGAVVLSQQP------GGI--KITSATVGRVID-LGITDSQDMGSAMAPAAADTIKQHLEDLGRTPDDYDLILTG- 233 (347)
T ss_dssp CCCEEEEEEEESSC------CSE--EEEEEECCCCBC-CSCCCTTCHHHHHHHHHHHHHHHHHHHHTCCGGGCSEEEEE-
T ss_pred EccceeEEEEEecC------CCC--ceeeeeeeeeec-cCCCCCCCccccchHHHHHHHHHHHHHhCCCHHHcCEEecC-
Confidence 46999999998643 122 3443322 112 1223332222 334567899999999999999999964
Q ss_pred CCCCCCCHHHHH--HHHHHhhcc
Q 011989 363 TSTPLGDTVEAT--AIRTVFSDH 383 (473)
Q Consensus 363 tgt~~~D~~E~~--a~~~~~~~~ 383 (473)
|.-++. -+.+++...
T Consensus 234 ------dL~q~g~~il~~l~~~~ 250 (347)
T 3lma_A 234 ------DLSGVGSPILKDLLKEE 250 (347)
T ss_dssp ------SCHHHHHHHHHHHHHHT
T ss_pred ------ChHHHHHHHHHHHHHHc
Confidence 222544 377777654
|
| >2p8u_A Hydroxymethylglutaryl-COA synthase, cytoplasmic; hydromethylglutaryl COA, mevalonate pathway, structural GENO structural genomics consortium, SGC; HET: COA; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.57 E-value=6.9e-15 Score=150.68 Aligned_cols=177 Identities=12% Similarity=0.138 Sum_probs=116.5
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCceeEEEecCCCChhhHHHHHHHHHHhccccCCCcchhhhhhhHHHHHHHHhcC
Q 011989 129 FIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYG 208 (473)
Q Consensus 129 ~~~la~~aa~~Al~dAgl~~~~~~~~~~~gvivg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lg 208 (473)
...|+++|+++||+++|+++++++ .|++++..+.. ..+..+..|...|+
T Consensus 73 ~~~La~~Aa~~aL~~agi~~~dId-----~li~~T~t~~~--------------------------~~ps~a~~v~~~L~ 121 (478)
T 2p8u_A 73 INSLCMTVVQNLMERNNLSYDCIG-----RLEVGTETIID--------------------------KSKSVKTNLMQLFE 121 (478)
T ss_dssp HHHHHHHHHHHHHHHTTCCGGGEE-----EEEEECSCCSC--------------------------SSSCHHHHHGGGTT
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCC-----EEEEEccCCcc--------------------------cCccHHHHHHHHHh
Confidence 578999999999999999877765 67777754321 12344567774444
Q ss_pred ---CCC-CeeeecCCcchHHHHHHHHHHHHHcCC--CCEEEEeecCCCcChHHHHHHhhhhccccccCCCCCCCCcCccC
Q 011989 209 ---FQG-PNHAAVTACATGAHSIGDAARMIQFGD--SDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDC 282 (473)
Q Consensus 209 ---l~G-p~~~v~~acasg~~Al~~A~~~I~~G~--~d~vlv~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pfd~ 282 (473)
+.. +++.+..+|++++.||..|..+|++|. .+.|||+++|.. . |..
T Consensus 122 ~lG~~~~~~~dv~~aC~gg~~AL~~A~~~i~sg~~~~~~aLVV~~Eia-~---------------------------~~~ 173 (478)
T 2p8u_A 122 ESGNTDIEGIDTTNACYGGTAAVFNAVNWIESSSWDGRYALVVAGDIA-V---------------------------YAT 173 (478)
T ss_dssp TTTCCCCBCCEEESGGGHHHHHHHHHHHHHTSTTCCSCEEEEEEEEEE-C---------------------------CCS
T ss_pred hcCCCCceEEEEcchhHHHHHHHHHHHHHHHcCCccCCEEEEEEeeee-c---------------------------ccC
Confidence 444 778899999999999999999999999 999999999941 0 222
Q ss_pred CCCceeeccceEEEEEccchHHHhcCCeEEEE-EEEEEEecCCCCCCCC-------CCChHH-----------HHHHHHH
Q 011989 283 GRDGFVIGEGSGVLVLEELEHAKKRGAKIYAE-VRGYGMSGDAHHITQP-------HIDGKG-----------AILAMTR 343 (473)
Q Consensus 283 ~~~G~~~geGaaavvL~~~~~A~~~g~~~~a~-i~g~~~~~d~~~~~~~-------~~~~~~-----------~~~a~~~ 343 (473)
.....++||||+|+||++.+. . ++.. +.|.. ..+......| ...+.. ....+++
T Consensus 174 ~~~~~~fGdGA~A~Ll~~~~~----~--~l~~~~~gs~-~~~~~d~~~p~~~~~~~~~dG~~s~~~y~~a~~~~~~~~~~ 246 (478)
T 2p8u_A 174 GNARPTGGVGAVALLIGPNAP----L--IFERGLRGTH-MQHAYDFYKPDMLSEYPIVDGKLSIQCYLSALDRCYSVYCK 246 (478)
T ss_dssp STTGGGCEEEEEEEEEESSCS----E--EECTTCCEEE-ECCCCSEECCCTTCSSCEECHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCcccceeEEEEEecCCC----c--eEeeccceec-ccchhheeeecCCCcceEEcCcchHHHHHHHHHHHHHHHHH
Confidence 223567999999999986421 0 1000 01211 1112211111 112211 1134556
Q ss_pred HHH--------HcCCCCCCccEEEEcCCCCCCCCHH
Q 011989 344 ALK--------QSGLQSHQVDYVNAHATSTPLGDTV 371 (473)
Q Consensus 344 al~--------~agl~~~dId~v~~hgtgt~~~D~~ 371 (473)
.++ ++|++++|||++..|-.+.+..+.+
T Consensus 247 ~l~~~~~~~~~~~g~~~~did~~v~H~~~~ki~~~~ 282 (478)
T 2p8u_A 247 KIHAQWQKEGNDKDFTLNDFGFMIFHSPYCKLVQKS 282 (478)
T ss_dssp HHHHHHHHHTCCCCCCGGGCSEEEECCSSHHHHHHH
T ss_pred HHhhhccccccccCCChHHcCEEEecCCcHHHHHHH
Confidence 666 6799999999999997666554443
|
| >2wya_A Hydroxymethylglutaryl-COA synthase, mitochondrial; steroid biosynthesis, cholesterol biosynthesis, mitochondrion, phosphoprotein; HET: HMG; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.39 E-value=1.2e-12 Score=134.03 Aligned_cols=115 Identities=12% Similarity=0.090 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCceeEEEecCCCChhhHHHHHHHHHHhccccCCCcchhhhhhhHHHHHHHHhcC
Q 011989 129 FIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYG 208 (473)
Q Consensus 129 ~~~la~~aa~~Al~dAgl~~~~~~~~~~~gvivg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lg 208 (473)
...|++.|+++||+++|+++++++ .|+++|.++.. ..+..+..|...||
T Consensus 54 ~~~ma~~Aa~~al~~a~i~~~~Id-----~ii~aT~t~~~--------------------------~~ps~a~~v~~~l~ 102 (460)
T 2wya_A 54 INSLCLTVVQRLMERIQLPWDSVG-----RLEVGTETIID--------------------------KSKAVKTVLMELFQ 102 (460)
T ss_dssp HHHHHHHHHHHHHHHHTCCGGGEE-----EEEEECSCCSC--------------------------SSSCHHHHHGGGTG
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCC-----EEEEEeCCCCC--------------------------CCCchHHHHHHHHh
Confidence 467999999999999999877776 68888865321 12345667888887
Q ss_pred CCC----CeeeecCCcchHHHHHHHHHHHHHcCCCCE--EEEeecCCCcChHHHHHHhhhhccccccCCCCCCCCcCccC
Q 011989 209 FQG----PNHAAVTACATGAHSIGDAARMIQFGDSDV--MVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDC 282 (473)
Q Consensus 209 l~G----p~~~v~~acasg~~Al~~A~~~I~~G~~d~--vlv~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pfd~ 282 (473)
+.| +++.+..+|++++.||..|.++|++|..+. +|++..+. .. |..
T Consensus 103 ~~g~~~~~a~D~~~aC~g~~~al~~A~~~i~~g~~~~~lvvv~~s~~-~~---------------------------~~d 154 (460)
T 2wya_A 103 DSGNTDIEGIDTTNACYGGTASLFNAANWMESSSWDGRYAMVVCGDI-AV---------------------------YPS 154 (460)
T ss_dssp GGTCCCCBCCEEESGGGHHHHHHHHHHHHHTSTTCCSCEEEEEEEEE-EC---------------------------CCS
T ss_pred ccCCCCeeEechhhhhhhHHHHHHHHHHHHHhccccceEEEEEeccc-cc---------------------------ccc
Confidence 654 457799999999999999999999998764 44433332 00 222
Q ss_pred CCCceeeccceEEEEEccch
Q 011989 283 GRDGFVIGEGSGVLVLEELE 302 (473)
Q Consensus 283 ~~~G~~~geGaaavvL~~~~ 302 (473)
.......||||+|++++..+
T Consensus 155 ~~~~~~~GdGA~A~l~~~~~ 174 (460)
T 2wya_A 155 GNARPTGGAGAVAMLIGPKA 174 (460)
T ss_dssp STTGGGCEEEEEEEEEESSC
T ss_pred ccccccCcchHHhhhcccCC
Confidence 33455679999999998643
|
| >4e1l_A Acetoacetyl-COA thiolase 2; 3-layer(ABA) sandwich, transferase; 2.00A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=82.80 E-value=6.2 Score=38.61 Aligned_cols=100 Identities=15% Similarity=0.058 Sum_probs=58.0
Q ss_pred EEEEEEEEecCCCC-CCCCCCC-hHHHHHHHHHHHHHcCCCCCCccEEEEcCCCCCCC-CHHHHHHHHHHhhcccCCCCc
Q 011989 313 AEVRGYGMSGDAHH-ITQPHID-GKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLG-DTVEATAIRTVFSDHATSGSL 389 (473)
Q Consensus 313 a~i~g~~~~~d~~~-~~~~~~~-~~~~~~a~~~al~~agl~~~dId~v~~hgtgt~~~-D~~E~~a~~~~~~~~~~~~~~ 389 (473)
+.|.|.+...-+.. ...++.. .+-..+++++||+++|++++|||.+.+- +.++.. ...-...+...++.. ...
T Consensus 7 v~Ivg~~rT~~g~~~~~~~~~~~~~L~~~a~~~Al~~agi~~~~Id~v~~g-~~~~~~~~~~~a~~~~~~lGl~---~~~ 82 (395)
T 4e1l_A 7 VVIVSAVRTPIGSFGGVFKNTSAVQLGTIAVKEAISRVGLNLSEIDEVIIG-NVLQTGLGQNVARQIAINAGIP---NSV 82 (395)
T ss_dssp EEEEEEEECCCEETTSTTTTSCHHHHHHHHHHHHHHHTTCCGGGCCEEEEE-CCCCSSTTCCHHHHHHHHTTCC---TTS
T ss_pred EEEEECccCCccccCCCcCCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEE-eccCCCCcchHHHHHHHHcCCC---CCc
Confidence 46777765543322 1122222 2345689999999999999999987653 322221 111223333334432 123
Q ss_pred eeeccccchhhhHHhHHHHHHHHHHHHHHhCc
Q 011989 390 AFSSTKGAIGHLLGAAGAVEAIFAVLAIHHGV 421 (473)
Q Consensus 390 ~v~s~k~~~Gh~~~AsG~~~li~~~~~l~~~~ 421 (473)
|...+ +..+++++..+..+...++.|.
T Consensus 83 p~~~v-----~~~Css~~~al~~A~~~I~~G~ 109 (395)
T 4e1l_A 83 PSYTV-----NKLCGSGLKSVQLAAQSITSGE 109 (395)
T ss_dssp CEEEE-----CCGGGHHHHHHHHHHHHHHTTS
T ss_pred eEEEc-----cccchHHHHHHHHHHHHHhCCC
Confidence 33222 4567788889999999998775
|
| >4dd5_A Acetyl-COA acetyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, thiolase; 1.25A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=81.71 E-value=7 Score=38.26 Aligned_cols=100 Identities=11% Similarity=0.015 Sum_probs=58.3
Q ss_pred EEEEEEEEecCCCC-CCCCCCCh-HHHHHHHHHHHHHcCCCCCCccEEEEcCCCCCCC-CHHHHHHHHHHhhcccCCCCc
Q 011989 313 AEVRGYGMSGDAHH-ITQPHIDG-KGAILAMTRALKQSGLQSHQVDYVNAHATSTPLG-DTVEATAIRTVFSDHATSGSL 389 (473)
Q Consensus 313 a~i~g~~~~~d~~~-~~~~~~~~-~~~~~a~~~al~~agl~~~dId~v~~hgtgt~~~-D~~E~~a~~~~~~~~~~~~~~ 389 (473)
+.|.|.+...-+.. ...++... +-..+++++||+++|++++|||.+.+- +.++.. ...-...+...++.. ...
T Consensus 9 v~Ivg~~rT~~~~~~~~~~~~~~~~L~~~A~~~AL~~agl~~~dId~vi~g-~~~~~~~~~~~a~~v~~~lGl~---~~~ 84 (396)
T 4dd5_A 9 VVIASAARTAVGSFGGAFKSVSAVELGVTAAKEAIKRANITPDMIDESLLG-GVLTAGLGQNIARQIALGAGIP---VEK 84 (396)
T ss_dssp EEEEEEEECCCEETTSTTTTSCHHHHHHHHHHHHHHHTTCCGGGCCEEEEE-CSCCTTSCSCHHHHHHHHTTCC---TTS
T ss_pred EEEEEcccCCeeecCCCCCCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEE-eecCCCCCchHHHHHHHHcCCC---CCc
Confidence 46777765543322 12222222 345689999999999999999987663 322221 122233344444432 123
Q ss_pred eeeccccchhhhHHhHHHHHHHHHHHHHHhCc
Q 011989 390 AFSSTKGAIGHLLGAAGAVEAIFAVLAIHHGV 421 (473)
Q Consensus 390 ~v~s~k~~~Gh~~~AsG~~~li~~~~~l~~~~ 421 (473)
|...+ +..+++++..+..+...++.|.
T Consensus 85 p~~~v-----~~aCss~~~al~~A~~~I~~G~ 111 (396)
T 4dd5_A 85 PAMTI-----NIVCGSGLRSVSMASQLIALGD 111 (396)
T ss_dssp CEEEE-----CCGGGHHHHHHHHHHHHHHHTS
T ss_pred eEEEe-----ccccHHHHHHHHHHHHHHhcCC
Confidence 33322 3456788888888999888775
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 473 | ||||
| d2ix4a1 | 270 | c.95.1.1 (A:31-300) Beta-ketoacyl-ACP synthase II | 5e-68 | |
| d1j3na1 | 249 | c.95.1.1 (A:1-249) Beta-ketoacyl-ACP synthase II { | 1e-64 | |
| d2gfva1 | 250 | c.95.1.1 (A:2-251) Beta-ketoacyl-ACP synthase II { | 9e-60 | |
| d1ox0a1 | 256 | c.95.1.1 (A:-5-251) Beta-ketoacyl-ACP synthase II | 3e-51 | |
| d2vbaa1 | 253 | c.95.1.1 (A:1-253) Beta-ketoacyl-ACP synthase I {E | 5e-51 | |
| d2ix4a2 | 161 | c.95.1.1 (A:301-461) Beta-ketoacyl-ACP synthase II | 6e-51 | |
| d1e5ma1 | 250 | c.95.1.1 (A:6-255) Beta-ketoacyl-ACP synthase II { | 6e-49 | |
| d1tqya2 | 205 | c.95.1.1 (A:219-423) Actinorhodin polyketide putat | 2e-45 | |
| d2gfva2 | 161 | c.95.1.1 (A:252-412) Beta-ketoacyl-ACP synthase II | 3e-41 | |
| d1e5ma2 | 161 | c.95.1.1 (A:256-416) Beta-ketoacyl-ACP synthase II | 9e-39 | |
| d1j3na2 | 159 | c.95.1.1 (A:250-408) Beta-ketoacyl-ACP synthase II | 5e-38 | |
| d2vbaa2 | 151 | c.95.1.1 (A:254-404) Beta-ketoacyl-ACP synthase I | 5e-35 | |
| d1ox0a2 | 158 | c.95.1.1 (A:252-409) Beta-ketoacyl-ACP synthase II | 5e-35 | |
| d1tqyb2 | 194 | c.95.1.1 (B:210-403) Actinorhodin polyketide putat | 7e-33 | |
| d1tqya1 | 216 | c.95.1.1 (A:3-218) Actinorhodin polyketide putativ | 3e-31 | |
| d1tqyb1 | 208 | c.95.1.1 (B:2-209) Actinorhodin polyketide putativ | 5e-27 |
| >d2ix4a1 c.95.1.1 (A:31-300) Beta-ketoacyl-ACP synthase II {Thale cress (Arabidopsis thaliana), mitochondrial isoform [TaxId: 3702]} Length = 270 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Beta-ketoacyl-ACP synthase II species: Thale cress (Arabidopsis thaliana), mitochondrial isoform [TaxId: 3702]
Score = 216 bits (551), Expect = 5e-68
Identities = 211/273 (77%), Positives = 242/273 (88%), Gaps = 3/273 (1%)
Query: 39 RRVVVTGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSK 98
RRVVVTG+GMVTPLG G ETTWRRLI GECGIR +T +DLKM +FD ET+L+ F QL+SK
Sbjct: 1 RRVVVTGLGMVTPLGRGVETTWRRLIDGECGIRGLTLDDLKMKSFDEETKLYTFDQLSSK 60
Query: 99 VAAVVPCGISSGEFNEDSWLNSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERTG 158
VAA VP G + GEF+E W + +++A FI YA+CAADEAL DA+WLP+++ +KERTG
Sbjct: 61 VAAFVPYGSNPGEFDEALW---LNSKAVANFIGYAVCAADEALRDAEWLPTEEEEKERTG 117
Query: 159 VSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYGFQGPNHAAVT 218
VSIGGGIGSI D V+AAQ+ICEKRLRRLSPFFIP+IL+NMASGHVSMKYGFQGPNHAAVT
Sbjct: 118 VSIGGGIGSICDIVEAAQLICEKRLRRLSPFFIPKILVNMASGHVSMKYGFQGPNHAAVT 177
Query: 219 ACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASR 278
ACATGAHSIGDA RMIQFGD+DVMVAGGTESSIDALS+AGF +SRAL+TK+N +PQEASR
Sbjct: 178 ACATGAHSIGDATRMIQFGDADVMVAGGTESSIDALSVAGFSRSRALSTKFNSSPQEASR 237
Query: 279 PFDCGRDGFVIGEGSGVLVLEELEHAKKRGAKI 311
PFDC RDGFVIGEGSGV+VLEE EHAK+RGAKI
Sbjct: 238 PFDCDRDGFVIGEGSGVIVLEEYEHAKRRGAKI 270
|
| >d1j3na1 c.95.1.1 (A:1-249) Beta-ketoacyl-ACP synthase II {Thermus thermophilus [TaxId: 274]} Length = 249 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Beta-ketoacyl-ACP synthase II species: Thermus thermophilus [TaxId: 274]
Score = 207 bits (527), Expect = 1e-64
Identities = 121/272 (44%), Positives = 169/272 (62%), Gaps = 23/272 (8%)
Query: 38 LRRVVVTGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTS 97
+RRVVVTG+G +TP+G G E + + G+ G+R IT D L
Sbjct: 1 MRRVVVTGLGALTPIGVGQEAFHKAQLAGKSGVRPITRFDA--------------SALPV 46
Query: 98 KVAAVVPCGISSGEFNEDSWLNSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERT 157
++AA V + ++L+ K+ R + RF+ YAL AA AL DA P D ER
Sbjct: 47 RIAAEVDV-------DPGAYLDRKELRRLDRFVQYALIAAQLALEDAGLKPEDL-DPERV 98
Query: 158 GVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYGFQGPNHAAV 217
G +G GIG + +++ E+ R+SPFFIP ++ NMAS H++M+YGF GP+ V
Sbjct: 99 GTLVGTGIGGMETWEAQSRVFLERGPNRISPFFIPMMIANMASAHIAMRYGFTGPSSTVV 158
Query: 218 TACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEAS 277
TACATGA ++G A RMIQ G++D+++AGGTE++I +++ F RAL+T+ N P++AS
Sbjct: 159 TACATGADALGSALRMIQLGEADLVLAGGTEAAITPMAIGAFAVMRALSTR-NEEPEKAS 217
Query: 278 RPFDCGRDGFVIGEGSGVLVLEELEHAKKRGA 309
RPF RDGFV+GEG+GVLVLE EHAKKRGA
Sbjct: 218 RPFTLSRDGFVMGEGAGVLVLEAYEHAKKRGA 249
|
| >d2gfva1 c.95.1.1 (A:2-251) Beta-ketoacyl-ACP synthase II {Escherichia coli [TaxId: 562]} Length = 250 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Beta-ketoacyl-ACP synthase II species: Escherichia coli [TaxId: 562]
Score = 194 bits (494), Expect = 9e-60
Identities = 109/271 (40%), Positives = 158/271 (58%), Gaps = 22/271 (8%)
Query: 39 RRVVVTGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSK 98
RRVVVTG+GM++P+G E+TW+ L+ G+ GI I D
Sbjct: 2 RRVVVTGLGMLSPVGNTVESTWKALLAGQSGISLIDHFDTS------------------- 42
Query: 99 VAAVVPCGISSGEFNEDSWLNSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERTG 158
A +FN + ++ K+ R + FI Y + A +A+ D L + R G
Sbjct: 43 -AYATKFAGLVKDFNCEDIISRKEQRKMDAFIQYGIVAGVQAMQD-SGLEITEENATRIG 100
Query: 159 VSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYGFQGPNHAAVT 218
+IG GIG + + + R++SPFF+P ++NM +GH+++ YG +GP+ + T
Sbjct: 101 AAIGSGIGGLGLIEENHTSLMNGGPRKISPFFVPSTIVNMVAGHLTIMYGLRGPSISIAT 160
Query: 219 ACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASR 278
A +G H+IG AAR+I +GD+DVMVAGG E + L + GF +RAL+T+ N PQ ASR
Sbjct: 161 AQTSGVHNIGHAARIIAYGDADVMVAGGAEKASTPLGVGGFGAARALSTR-NDNPQAASR 219
Query: 279 PFDCGRDGFVIGEGSGVLVLEELEHAKKRGA 309
P+D RDGFV+G+G+G+LVLEE EHAKKRGA
Sbjct: 220 PWDKERDGFVLGDGAGMLVLEEYEHAKKRGA 250
|
| >d1ox0a1 c.95.1.1 (A:-5-251) Beta-ketoacyl-ACP synthase II {Streptococcus pneumoniae [TaxId: 1313]} Length = 256 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Beta-ketoacyl-ACP synthase II species: Streptococcus pneumoniae [TaxId: 1313]
Score = 172 bits (436), Expect = 3e-51
Identities = 111/272 (40%), Positives = 149/272 (54%), Gaps = 23/272 (8%)
Query: 38 LRRVVVTGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTS 97
L RVVVTG G+ +P+G E W L G+ GI IT D +FD
Sbjct: 8 LNRVVVTGYGVTSPIGNTPEEFWNSLATGKIGIGGITKFD--HSDFD------------- 52
Query: 98 KVAAVVPCGISSGEFNEDSWLNSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERT 157
V +F D + KD + YAL AA EA++ A L + ++R
Sbjct: 53 -----VHNAAEIQDFPFDKYFVKKDTNRFDNYSLYALYAAQEAVNHA-NLDVEALNRDRF 106
Query: 158 GVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYGFQGPNHAAV 217
GV + GIG I + D + EK +R+ P +P+ L NMASG+V+M++G G +
Sbjct: 107 GVIVASGIGGIKEIEDQVLRLHEKGPKRVKPMTLPKALPNMASGNVAMRFGANGVCKSIN 166
Query: 218 TACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEAS 277
TAC++ +IGDA R I+FG DVM+ GGTE+SI ++AGF AL+T P AS
Sbjct: 167 TACSSSNDAIGDAFRSIKFGFQDVMLVGGTEASITPFAIAGFQALTALST--TEDPTRAS 224
Query: 278 RPFDCGRDGFVIGEGSGVLVLEELEHAKKRGA 309
PFD R+GFV+GEGSG+LVLE LEHA+KRGA
Sbjct: 225 IPFDKDRNGFVMGEGSGMLVLESLEHAEKRGA 256
|
| >d2vbaa1 c.95.1.1 (A:1-253) Beta-ketoacyl-ACP synthase I {Escherichia coli [TaxId: 562]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Beta-ketoacyl-ACP synthase I species: Escherichia coli [TaxId: 562]
Score = 171 bits (434), Expect = 5e-51
Identities = 84/275 (30%), Positives = 129/275 (46%), Gaps = 23/275 (8%)
Query: 38 LRRVVVTGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTS 97
++R V+TG+G+V+ +G + L G GI + S
Sbjct: 1 MKRAVITGLGIVSSIGNNQQEVLASLREGRSGITFSQELKDS--------------GMRS 46
Query: 98 KVAAVVPCGISSGEFNEDSWLNSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERT 157
V V + ++ K R ++ YA + ++A+ DA P R
Sbjct: 47 HVWGNVKL-------DTTGLIDRKVVRFMSDASIYAFLSMEQAIADAGLSPEAYQNNPRV 99
Query: 158 GVSIGGGIGSISDTVDAAQMIC-EKRLRRLSPFFIPRILINMASGHVSMKYGFQGPNHAA 216
G+ G G GS V A + + L+ + P+ + + + + S ++ + G N++
Sbjct: 100 GLIAGSGGGSPRFQVFGADAMRGPRGLKAVGPYVVTKAMASGVSACLATPFKIHGVNYSI 159
Query: 217 VTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEA 276
+ACAT AH IG+A IQ G D++ AGG E + F AL+TKYN TP++A
Sbjct: 160 SSACATSAHCIGNAVEQIQLGKQDIVFAGGGEE-LCWEMACEFDAMGALSTKYNDTPEKA 218
Query: 277 SRPFDCGRDGFVIGEGSGVLVLEELEHAKKRGAKI 311
SR +D RDGFVI G G++V+EELEHA RGA I
Sbjct: 219 SRTYDAHRDGFVIAGGGGMVVVEELEHALARGAHI 253
|
| >d2ix4a2 c.95.1.1 (A:301-461) Beta-ketoacyl-ACP synthase II {Thale cress (Arabidopsis thaliana), mitochondrial isoform [TaxId: 3702]} Length = 161 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Beta-ketoacyl-ACP synthase II species: Thale cress (Arabidopsis thaliana), mitochondrial isoform [TaxId: 3702]
Score = 168 bits (426), Expect = 6e-51
Identities = 125/160 (78%), Positives = 141/160 (88%)
Query: 312 YAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTV 371
YAE+ GYGMSGDAHHITQP DGKGA+LAMTRAL+QSGL +Q+DYVNAHATSTP+GD V
Sbjct: 1 YAELCGYGMSGDAHHITQPPEDGKGAVLAMTRALRQSGLCPNQIDYVNAHATSTPIGDAV 60
Query: 372 EATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLAIHHGVAPLTLNLAKP 431
EA AI+TVFS+HATSG+LAFSSTKGA GHLLGAAGAVEAIF++LAIHHGVAP+TLN+ P
Sbjct: 61 EARAIKTVFSEHATSGTLAFSSTKGATGHLLGAAGAVEAIFSILAIHHGVAPMTLNVKNP 120
Query: 432 DPIFNDNFMPLTASKDMPISAALSNSFGFGGTNASLLFTK 471
DPIF+ FMPLT SK M + A+SNSFGFGGTNASLLF
Sbjct: 121 DPIFDKRFMPLTTSKKMLVRTAMSNSFGFGGTNASLLFAS 160
|
| >d1e5ma1 c.95.1.1 (A:6-255) Beta-ketoacyl-ACP synthase II {Synechocystis sp. [TaxId: 1143]} Length = 250 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Beta-ketoacyl-ACP synthase II species: Synechocystis sp. [TaxId: 1143]
Score = 166 bits (420), Expect = 6e-49
Identities = 110/271 (40%), Positives = 158/271 (58%), Gaps = 22/271 (8%)
Query: 39 RRVVVTGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSK 98
+RVVVTG+G +TP+G + W+ L+ G GI IT D +
Sbjct: 2 KRVVVTGLGAITPIGNTLQDYWQGLMEGRNGIGPITRFDA--------------SDQACR 47
Query: 99 VAAVVPCGISSGEFNEDSWLNSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERTG 158
V F+ +L+ K+ + + RF +A+CA+ +A++DAK + ++ + G
Sbjct: 48 FGGEVKD------FDATQFLDRKEAKRMDRFCHFAVCASQQAINDAKLVINEL-NADEIG 100
Query: 159 VSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYGFQGPNHAAVT 218
V IG GIG + D ++ +K R SPF IP ++ NMASG ++ G +GPN+ VT
Sbjct: 101 VLIGTGIGGLKVLEDQQTILLDKGPSRCSPFMIPMMIANMASGLTAINLGAKGPNNCTVT 160
Query: 219 ACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASR 278
ACA G+++IGDA R++Q G + M+ GGTE++I LS AGF +RAL+ N P ASR
Sbjct: 161 ACAAGSNAIGDAFRLVQNGYAKAMICGGTEAAITPLSYAGFASARALSF-RNDDPLHASR 219
Query: 279 PFDCGRDGFVIGEGSGVLVLEELEHAKKRGA 309
PFD RDGFV+GEGSG+L+LEELE A RGA
Sbjct: 220 PFDKDRDGFVMGEGSGILILEELESALARGA 250
|
| >d1tqya2 c.95.1.1 (A:219-423) Actinorhodin polyketide putative beta-ketoacyl synthase 1, KasA {Streptomyces coelicolor [TaxId: 1902]} Length = 205 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Actinorhodin polyketide putative beta-ketoacyl synthase 1, KasA species: Streptomyces coelicolor [TaxId: 1902]
Score = 155 bits (392), Expect = 2e-45
Identities = 75/200 (37%), Positives = 113/200 (56%), Gaps = 3/200 (1%)
Query: 272 TPQEASRPFDCGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPH 331
P+ ASRPFD RDGFV+ EG+ + VLE+ + A RGA+I+AE+ GY +A+H+T
Sbjct: 2 DPEHASRPFDGTRDGFVLAEGAAMFVLEDYDSALARGARIHAEISGYATRCNAYHMTGLK 61
Query: 332 IDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAF 391
DG+ + AL +S + +DY+NAH + T D E A + +HA
Sbjct: 62 ADGREMAETIRVALDESRTDATDIDYINAHGSGTRQNDRHETAAYKRALGEHA--RRTPV 119
Query: 392 SSTKGAIGHLLGAAGAVEAIFAVLAIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPIS 451
SS K +GH LGA G++E VLA+ HGV P T NL DP + +++PL A ++ +
Sbjct: 120 SSIKSMVGHSLGAIGSLEIAACVLALEHGVVPPTANLRTSDPECDLDYVPLEA-RERKLR 178
Query: 452 AALSNSFGFGGTNASLLFTK 471
+ L+ GFGG ++++
Sbjct: 179 SVLTVGSGFGGFQSAMVLRD 198
|
| >d2gfva2 c.95.1.1 (A:252-412) Beta-ketoacyl-ACP synthase II {Escherichia coli [TaxId: 562]} Length = 161 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Beta-ketoacyl-ACP synthase II species: Escherichia coli [TaxId: 562]
Score = 142 bits (359), Expect = 3e-41
Identities = 82/162 (50%), Positives = 111/162 (68%), Gaps = 2/162 (1%)
Query: 310 KIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGD 369
KIYAE+ G+GMS DA+H+T P +G GA LAM AL+ +G+++ Q+ YVNAH TSTP GD
Sbjct: 1 KIYAELVGFGMSSDAYHMTSPPENGAGAALAMANALRDAGIEASQIGYVNAHGTSTPAGD 60
Query: 370 TVEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLAIHHGVAPLTLNLA 429
EA A++T+F + A+ + SSTK GHLLGAAGAVE+I+++LA+ P T+NL
Sbjct: 61 KAEAQAVKTIFGEAASRVLV--SSTKSMTGHLLGAAGAVESIYSILALRDQAVPPTINLD 118
Query: 430 KPDPIFNDNFMPLTASKDMPISAALSNSFGFGGTNASLLFTK 471
PD + +F+P A + + L NSFGFGGTN SL+F K
Sbjct: 119 NPDEGCDLDFVPHEARQVSGMEYTLCNSFGFGGTNGSLIFKK 160
|
| >d1e5ma2 c.95.1.1 (A:256-416) Beta-ketoacyl-ACP synthase II {Synechocystis sp. [TaxId: 1143]} Length = 161 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Beta-ketoacyl-ACP synthase II species: Synechocystis sp. [TaxId: 1143]
Score = 136 bits (342), Expect = 9e-39
Identities = 77/162 (47%), Positives = 102/162 (62%), Gaps = 3/162 (1%)
Query: 310 KIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGD 369
KIY E+ GY M+ DA+HIT P DG+GA A+ ALK SGL+ V Y+NAH TSTP D
Sbjct: 1 KIYGEMVGYAMTCDAYHITAPVPDGRGATRAIAWALKDSGLKPEMVSYINAHGTSTPAND 60
Query: 370 TVEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLAIHHGVAPLTLNLA 429
E AI+ +HA ++A SSTK GHLLG +G +EA+ V+AI P T+NL
Sbjct: 61 VTETRAIKQALGNHAY--NIAVSSTKSMTGHLLGGSGGIEAVATVMAIAEDKVPPTINLE 118
Query: 430 KPDPIFNDNFMPLTASKDMPISAALSNSFGFGGTNASLLFTK 471
PDP + +++P + + + + ALSNSFGFGG N +L F K
Sbjct: 119 NPDPECDLDYVPGQS-RALIVDVALSNSFGFGGHNVTLAFKK 159
|
| >d1j3na2 c.95.1.1 (A:250-408) Beta-ketoacyl-ACP synthase II {Thermus thermophilus [TaxId: 274]} Length = 159 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Beta-ketoacyl-ACP synthase II species: Thermus thermophilus [TaxId: 274]
Score = 134 bits (337), Expect = 5e-38
Identities = 93/162 (57%), Positives = 113/162 (69%), Gaps = 4/162 (2%)
Query: 310 KIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGD 369
+IYAE+ G+G S DAHHIT+PH +GKGA LAM RALK +G+ QV Y+NAH TSTP+GD
Sbjct: 1 RIYAELVGFGRSADAHHITEPHPEGKGAALAMARALKDAGIAPEQVGYINAHGTSTPVGD 60
Query: 370 TVEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLAIHHGVAPLTLNLA 429
E AI+ VF DHA L SSTK IGHLLGAAGAVEAI V A++HGV P T+NL
Sbjct: 61 RAEVLAIKRVFGDHAK--RLMVSSTKSMIGHLLGAAGAVEAIATVQALYHGVIPPTINLE 118
Query: 430 KPDPIFNDNFMPLTASKDMPISAALSNSFGFGGTNASLLFTK 471
PDP + +F+P ++ + ALSNSF FGG NA L F +
Sbjct: 119 DPDPELDLDFVPEP--REAKVDYALSNSFAFGGHNAVLAFKR 158
|
| >d2vbaa2 c.95.1.1 (A:254-404) Beta-ketoacyl-ACP synthase I {Escherichia coli [TaxId: 562]} Length = 151 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Beta-ketoacyl-ACP synthase I species: Escherichia coli [TaxId: 562]
Score = 125 bits (315), Expect = 5e-35
Identities = 64/160 (40%), Positives = 91/160 (56%), Gaps = 10/160 (6%)
Query: 312 YAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTV 371
YAE+ GYG + D + P G+GA+ M A+ +DY+N+H TSTP+GD
Sbjct: 1 YAEIVGYGATSDGADMVAPS--GEGAVRCMKMAMHG---VDTPIDYLNSHGTSTPVGDVK 55
Query: 372 EATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLAIHHGVAPLTLNLAKP 431
E AIR VF D + A S+TK GH LGAAG EAI+++L + HG ++N+ +
Sbjct: 56 ELAAIREVFGDKS----PAISATKAMTGHSLGAAGVQEAIYSLLMLEHGFIAPSINIEEL 111
Query: 432 DPIFNDNFMPLTASKDMPISAALSNSFGFGGTNASLLFTK 471
D + T + D ++ +SNSFGFGGTNA+L+ K
Sbjct: 112 DEQAAGLNIV-TETTDRELTTVMSNSFGFGGTNATLVMRK 150
|
| >d1ox0a2 c.95.1.1 (A:252-409) Beta-ketoacyl-ACP synthase II {Streptococcus pneumoniae [TaxId: 1313]} Length = 158 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Beta-ketoacyl-ACP synthase II species: Streptococcus pneumoniae [TaxId: 1313]
Score = 126 bits (316), Expect = 5e-35
Identities = 70/161 (43%), Positives = 93/161 (57%), Gaps = 6/161 (3%)
Query: 311 IYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDT 370
I AEV GYG + DA+H+T PH +G+GAI A+ AL+++ + QV YVNAH TSTP +
Sbjct: 2 ILAEVVGYGNTCDAYHMTSPHPEGQGAIKAIKLALEEAEISPEQVAYVNAHGTSTPANEK 61
Query: 371 VEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLAIHHGVAPLTLNLAK 430
E+ AI V + SSTK GHLLGAAGAVEAI + A+ H P+T ++
Sbjct: 62 GESGAIVAVLGKE-----VPVSSTKSFTGHLLGAAGAVEAIVTIEAMRHNFVPMTAGTSE 116
Query: 431 PDPIFNDNFMPLTASKDMPISAALSNSFGFGGTNASLLFTK 471
N + + I A+SN+FGFGG NA L F +
Sbjct: 117 VSDYIEANVVYGQG-LEKEIPYAISNTFGFGGHNAVLAFKR 156
|
| >d1tqyb2 c.95.1.1 (B:210-403) Actinorhodin polyketide putative beta-ketoacyl synthase 2, KasB {Streptomyces coelicolor [TaxId: 1902]} Length = 194 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Actinorhodin polyketide putative beta-ketoacyl synthase 2, KasB species: Streptomyces coelicolor [TaxId: 1902]
Score = 121 bits (303), Expect = 7e-33
Identities = 51/200 (25%), Positives = 77/200 (38%), Gaps = 9/200 (4%)
Query: 273 PQEASRPFDCGRDGFVIGEGSGVLVLEELEHAKKRGAK-IYAEVRGYGMSGDAHHITQPH 331
P A PFD G+V GEG +LVLE+ A+ RG Y E+ G + D
Sbjct: 2 PDRAYLPFDERAAGYVPGEGGAILVLEDSAAAEARGRHDAYGELAGCASTFDPAP---GS 58
Query: 332 IDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAF 391
G A+ AL +G VD V A P D EA AI VF
Sbjct: 59 GRPAGLERAIRLALNDAGTGPEDVDVVFADGAGVPELDAAEARAIGRVFGREGVP----V 114
Query: 392 SSTKGAIGHLLGAAGAVEAIFAVLAIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPIS 451
+ K G L G ++ + A++++ GV T + + + + +
Sbjct: 115 TVPKTTTGRLYSGGGPLDVVTALMSLREGVIAPTAGVTSVPREYGIDLVL-GEPRSTAPR 173
Query: 452 AALSNSFGFGGTNASLLFTK 471
AL + G G N++ + +
Sbjct: 174 TALVLARGRWGFNSAAVLRR 193
|
| >d1tqya1 c.95.1.1 (A:3-218) Actinorhodin polyketide putative beta-ketoacyl synthase 1, KasA {Streptomyces coelicolor [TaxId: 1902]} Length = 216 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Actinorhodin polyketide putative beta-ketoacyl synthase 1, KasA species: Streptomyces coelicolor [TaxId: 1902]
Score = 117 bits (294), Expect = 3e-31
Identities = 55/236 (23%), Positives = 88/236 (37%), Gaps = 27/236 (11%)
Query: 39 RRVVVTGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSK 98
RRVV+TG+G+ P G G W L G R I+ D +
Sbjct: 1 RRVVITGVGVRAPGGNGTRQFWELLTSGRTATRRISFFDPSPYRSQVAAEAD-------- 52
Query: 99 VAAVVPCGISSGEFNEDSWLNSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERTG 158
++ + R +A+ A EA + P D R G
Sbjct: 53 ------------FDPVAEGFGPRELDRMDRASQFAVACAREAFAASGLDP-DTLDPARVG 99
Query: 159 VSIGGGIGSISDTVDAAQMIC------EKRLRRLSPFFIPRILINMASGHVSMKYGFQGP 212
VS+G + + + ++ E LS ++ ++ V+ G +GP
Sbjct: 100 VSLGSAVAAATSLEREYLLLSDSGRDWEVDAAWLSRHMFDYLVPSVMPAEVAWAVGAEGP 159
Query: 213 NHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTK 268
T C +G S+G+A R I+ G +DVM AG ++ I + +A F RA T +
Sbjct: 160 VTMVSTGCTSGLDSVGNAVRAIEEGSADVMFAGAADTPITPIVVACFDAIRATTAR 215
|
| >d1tqyb1 c.95.1.1 (B:2-209) Actinorhodin polyketide putative beta-ketoacyl synthase 2, KasB {Streptomyces coelicolor [TaxId: 1902]} Length = 208 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Actinorhodin polyketide putative beta-ketoacyl synthase 2, KasB species: Streptomyces coelicolor [TaxId: 1902]
Score = 105 bits (263), Expect = 5e-27
Identities = 44/227 (19%), Positives = 84/227 (37%), Gaps = 22/227 (9%)
Query: 41 VVVTGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSKVA 100
V++TG+G+V P G G W ++ G G+ +T D+ Q+ F
Sbjct: 2 VLITGVGVVAPNGLGLAPYWSAVLDGRHGLGPVTRFDVSRYPATLAGQIDDFHA------ 55
Query: 101 AVVPCGISSGEFNEDSWLNSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERTGVS 160
P I + + + A + GV
Sbjct: 56 ---PDHIPGRLLPQTDPSTRLALTAADWALQDA------------KADPESLTDYDMGVV 100
Query: 161 IGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYGFQGPNHAAVTAC 220
G T + + + + +S + + +G +S+++G +GP+ A V
Sbjct: 101 TANACGGFDFTHREFRKLWSEGPKSVSVYESFAWFYAVNTGQISIRHGMRGPSSALVAEQ 160
Query: 221 ATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTT 267
A G ++G A R I+ G + ++V+GG +S++D S ++T
Sbjct: 161 AGGLDALGHARRTIRRG-TPLVVSGGVDSALDPWGWVSQIASGRIST 206
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 473 | |||
| d1ox0a1 | 256 | Beta-ketoacyl-ACP synthase II {Streptococcus pneum | 100.0 | |
| d2gfva1 | 250 | Beta-ketoacyl-ACP synthase II {Escherichia coli [T | 100.0 | |
| d1j3na1 | 249 | Beta-ketoacyl-ACP synthase II {Thermus thermophilu | 100.0 | |
| d1tqya2 | 205 | Actinorhodin polyketide putative beta-ketoacyl syn | 100.0 | |
| d1tqyb2 | 194 | Actinorhodin polyketide putative beta-ketoacyl syn | 100.0 | |
| d1e5ma1 | 250 | Beta-ketoacyl-ACP synthase II {Synechocystis sp. [ | 100.0 | |
| d2vbaa1 | 253 | Beta-ketoacyl-ACP synthase I {Escherichia coli [Ta | 100.0 | |
| d2ix4a1 | 270 | Beta-ketoacyl-ACP synthase II {Thale cress (Arabid | 100.0 | |
| d1e5ma2 | 161 | Beta-ketoacyl-ACP synthase II {Synechocystis sp. [ | 100.0 | |
| d1ox0a2 | 158 | Beta-ketoacyl-ACP synthase II {Streptococcus pneum | 100.0 | |
| d2ix4a2 | 161 | Beta-ketoacyl-ACP synthase II {Thale cress (Arabid | 100.0 | |
| d2gfva2 | 161 | Beta-ketoacyl-ACP synthase II {Escherichia coli [T | 100.0 | |
| d1j3na2 | 159 | Beta-ketoacyl-ACP synthase II {Thermus thermophilu | 100.0 | |
| d1tqyb1 | 208 | Actinorhodin polyketide putative beta-ketoacyl syn | 100.0 | |
| d1tqya1 | 216 | Actinorhodin polyketide putative beta-ketoacyl syn | 100.0 | |
| d2vbaa2 | 151 | Beta-ketoacyl-ACP synthase I {Escherichia coli [Ta | 100.0 | |
| d1teda_ | 372 | Polyketide synthase PKS18 {Mycobacterium tuberculo | 99.7 | |
| d1u6ea1 | 184 | Ketoacyl-ACP synthase III (FabH) {Mycobacterium tu | 99.5 | |
| d1hnja1 | 174 | Ketoacyl-ACP synthase III (FabH) {Escherichia coli | 99.48 | |
| d1ub7a1 | 172 | Ketoacyl-ACP synthase III (FabH) {Thermus thermoph | 99.47 | |
| d1afwa2 | 124 | Thiolase {Baker's yeast (Saccharomyces cerevisiae) | 99.44 | |
| d1ulqa2 | 125 | Beta-ketoadipyl CoA thiolase {Thermus thermophilus | 99.41 | |
| d1mzja1 | 181 | Priming beta-ketosynthase from the r1128 polyketid | 99.38 | |
| d1m3ka2 | 124 | Biosynthetic thiolase {Zoogloea ramigera [TaxId: 3 | 99.37 | |
| d1wdkc2 | 128 | Fatty oxidation complex beta subunit (3-ketoacyl-C | 99.36 | |
| d1ulqa1 | 273 | Beta-ketoadipyl CoA thiolase {Thermus thermophilus | 99.23 | |
| d1m3ka1 | 268 | Biosynthetic thiolase {Zoogloea ramigera [TaxId: 3 | 99.23 | |
| d1u0ma1 | 200 | Putative polyketide synthase SCO1206 {Streptomyces | 99.21 | |
| d1wdkc1 | 262 | Fatty oxidation complex beta subunit (3-ketoacyl-C | 99.14 | |
| d1bi5a1 | 235 | Chalcone synthase {Alfalfa (Medicago sativa) [TaxI | 99.12 | |
| d1afwa1 | 269 | Thiolase {Baker's yeast (Saccharomyces cerevisiae) | 99.1 | |
| d1xpma1 | 166 | 3-hydroxy-3-methylglutaryl CoA synthase MvaS {Stap | 99.02 | |
| d1u6ea2 | 148 | Ketoacyl-ACP synthase III (FabH) {Mycobacterium tu | 96.84 | |
| d1ub7a2 | 149 | Ketoacyl-ACP synthase III (FabH) {Thermus thermoph | 96.35 | |
| d1hnja2 | 143 | Ketoacyl-ACP synthase III (FabH) {Escherichia coli | 95.91 | |
| d1mzja2 | 153 | Priming beta-ketosynthase from the r1128 polyketid | 95.21 | |
| d1u0ma2 | 148 | Putative polyketide synthase SCO1206 {Streptomyces | 92.47 | |
| d1ee0a2 | 160 | Pyrone synthase (PyS, chalcone synthase 2) {Gerber | 90.52 | |
| d1bi5a2 | 154 | Chalcone synthase {Alfalfa (Medicago sativa) [TaxI | 90.38 | |
| d1u0ua2 | 156 | Dihydropinosylvin synthase {Scots pine (Pinus sylv | 87.08 | |
| d1u0ma1 | 200 | Putative polyketide synthase SCO1206 {Streptomyces | 84.04 | |
| d1u6ea1 | 184 | Ketoacyl-ACP synthase III (FabH) {Mycobacterium tu | 83.26 | |
| d1ub7a1 | 172 | Ketoacyl-ACP synthase III (FabH) {Thermus thermoph | 83.09 | |
| d1mzja1 | 181 | Priming beta-ketosynthase from the r1128 polyketid | 81.86 | |
| d1hnja1 | 174 | Ketoacyl-ACP synthase III (FabH) {Escherichia coli | 81.06 |
| >d2gfva1 c.95.1.1 (A:2-251) Beta-ketoacyl-ACP synthase II {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Beta-ketoacyl-ACP synthase II species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=4.5e-46 Score=351.00 Aligned_cols=250 Identities=44% Similarity=0.793 Sum_probs=229.7
Q ss_pred CCceEEEecceecccCCCHHHHHHHHHcCCCceeeCCccccccCCCCccccccccCCcccceeEEecCCCCCCCCCcccC
Q 011989 38 LRRVVVTGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSKVAAVVPCGISSGEFNEDSW 117 (473)
Q Consensus 38 ~~~v~ItG~g~~~p~g~~~~~~~~~l~~G~s~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~~~~ 117 (473)
.+||||||||+++|+|.++++||++|++|+++|++++.++ ...++.++++.+++ |+...+
T Consensus 1 ~rrVaItG~G~vtp~G~~~~~~w~~L~~G~s~i~~~~~~~--------------~~~~~~~~~~~v~~------~~~~~~ 60 (250)
T d2gfva1 1 KRRVVVTGLGMLSPVGNTVESTWKALLAGQSGISLIDHFD--------------TSAYATKFAGLVKD------FNCEDI 60 (250)
T ss_dssp CCCEEEEEEEEEBTTBSSHHHHHHHHHTTCCCEEECCSSC--------------CTTCSCCEEECCTT------CCCTTT
T ss_pred CCeEEEECCeeECCCcCCHHHHHHHHHcCCCeeecCCccc--------------ccccCCccceeccc------chhhhh
Confidence 3689999999999999999999999999999999998655 34566778888876 666666
Q ss_pred CCchhhhccCHHHHHHHHHHHHHHHHcCCCCCCCCCCCceeEEEecCCCChhhHHHHHHHHHHhccccCCCcchhhhhhh
Q 011989 118 LNSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILIN 197 (473)
Q Consensus 118 ~~~~~~~~~~~~~~la~~aa~~Al~dAgl~~~~~~~~~~~gvivg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (473)
+++++.+.++++++|++.++++||+|||+...+. +..++||++|++.+........+..+.......++|..++..+.+
T Consensus 61 ~~~~~~~~~d~~~~~~l~aa~~Al~dAg~~~~~~-~~~~~gv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (250)
T d2gfva1 61 ISRKEQRKMDAFIQYGIVAGVQAMQDSGLEITEE-NATRIGAAIGSGIGGLGLIEENHTSLMNGGPRKISPFFVPSTIVN 139 (250)
T ss_dssp SCHHHHTTSCHHHHHHHHHHHHHHHHHTCCCCTT-TGGGEEEEEECSSCCHHHHHHHHHHHHHHCGGGSCTTHHHHHSTT
T ss_pred hhhHHHhhcCHHHHHHHHHHHHHHHhcCCCcccc-CccceEEEEeeccCCcchhhhhHHHHhhccccccccchhhhhhhh
Confidence 8889999999999999999999999999987765 588999999999999998888888888888899999999999999
Q ss_pred HHHHHHHHhcCCCCCeeeecCCcchHHHHHHHHHHHHHcCCCCEEEEeecCCCcChHHHHHHhhhhccccccCCCCCCCC
Q 011989 198 MASGHVSMKYGFQGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEAS 277 (473)
Q Consensus 198 ~~a~~ia~~lgl~Gp~~~v~~acasg~~Al~~A~~~I~~G~~d~vlv~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (473)
.++++|++.||++||+++|+++|+|++.||.+|+++|++|++|++||+|+|..+++..+..|..++.++.. +..|+..|
T Consensus 140 ~~a~~ia~~~gl~Gp~~tv~~aCaSg~~Ai~~A~~~i~~G~~d~~lvgg~d~~~~~~~~~~f~~~~~ls~~-~~~p~~~~ 218 (250)
T d2gfva1 140 MVAGHLTIMYGLRGPSISIATAQTSGVHNIGHAARIIAYGDADVMVAGGAEKASTPLGVGGFGAARALSTR-NDNPQAAS 218 (250)
T ss_dssp HHHHHHHHHTTCCSCEECCCCGGGHHHHHHHHHHHHHHHTSCSEEEEEEEECCCSHHHHHHHHHTTCBCCC-TTCHHHHC
T ss_pred HHHHHHHHHhCCCCCccccccccchhhhhhHHHHHHHHcCCcchhhcccchhhcCcHHHHHHHhcccccCC-CCCCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999865 34456789
Q ss_pred cCccCCCCceeeccceEEEEEccchHHHhcCC
Q 011989 278 RPFDCGRDGFVIGEGSGVLVLEELEHAKKRGA 309 (473)
Q Consensus 278 ~pfd~~~~G~~~geGaaavvL~~~~~A~~~g~ 309 (473)
||||++++|+++|||+++||||++++|++||+
T Consensus 219 rPFD~~rdG~v~gEGaa~lVLE~~~~A~~rGA 250 (250)
T d2gfva1 219 RPWDKERDGFVLGDGAGMLVLEEYEHAKKRGA 250 (250)
T ss_dssp CTTBTTCCSBCBBCEEEEEEEEEHHHHHHHTC
T ss_pred CCCCCCCCCEeeeeEEEEEEECcHHHHHHCcC
Confidence 99999999999999999999999999999984
|
| >d1j3na1 c.95.1.1 (A:1-249) Beta-ketoacyl-ACP synthase II {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Beta-ketoacyl-ACP synthase II species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=7.7e-46 Score=349.09 Aligned_cols=249 Identities=49% Similarity=0.839 Sum_probs=224.9
Q ss_pred CCceEEEecceecccCCCHHHHHHHHHcCCCceeeCCccccccCCCCccccccccCCcccceeEEecCCCCCCCCCcccC
Q 011989 38 LRRVVVTGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSKVAAVVPCGISSGEFNEDSW 117 (473)
Q Consensus 38 ~~~v~ItG~g~~~p~g~~~~~~~~~l~~G~s~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~~~~ 117 (473)
|+||||||||+++|.|.++++||++|++|+++|++++.++ ...++..+.+... +++..+
T Consensus 1 M~rVaItG~G~vsp~g~~~~e~w~~l~~G~s~i~~~~~~~--------------~~~~~~~~~~~~~-------~~~~~~ 59 (249)
T d1j3na1 1 MRRVVVTGLGALTPIGVGQEAFHKAQLAGKSGVRPITRFD--------------ASALPVRIAAEVD-------VDPGAY 59 (249)
T ss_dssp CCCEEEEEEEEEETTEESHHHHHHHHHHTCCCEEECCSSC--------------CTTSSCCEEECCC-------CCGGGT
T ss_pred CCcEEEECCEeECCCcCCHHHHHHHHHcCCCccccCCccc--------------cccCCcccccccc-------cccccc
Confidence 5789999999999999999999999999999999998755 2334444444432 556666
Q ss_pred CCchhhhccCHHHHHHHHHHHHHHHHcCCCCCCCCCCCceeEEEecCCCChhhHHHHHHHHHHhccccCCCcchhhhhhh
Q 011989 118 LNSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILIN 197 (473)
Q Consensus 118 ~~~~~~~~~~~~~~la~~aa~~Al~dAgl~~~~~~~~~~~gvivg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (473)
++++..+.+++++++++.++++||+|||++++++ ++.|+||++|++.+.......+.....+.+...++|..++..+.+
T Consensus 60 ~~~~~~~~~d~~~~~~l~aa~~Al~dAGl~~~~~-~~~~~gv~~Gs~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (249)
T d1j3na1 60 LDRKELRRLDRFVQYALIAAQLALEDAGLKPEDL-DPERVGTLVGTGIGGMETWEAQSRVFLERGPNRISPFFIPMMIAN 138 (249)
T ss_dssp SCHHHHTTSCHHHHHHHHHHHHHHHHHTCCGGGS-CGGGEEEEEECSSCCHHHHHHHHHHHHHHCGGGSCTTHHHHHSTT
T ss_pred ccHHHHhhCCHHHHHHHHHHHHHHHHcCCChhHc-CCccEEEEEEECCCcccccccccccccccCccccChhhhccccch
Confidence 8889999999999999999999999999988776 478999999999999999999888888889999999999999999
Q ss_pred HHHHHHHHhcCCCCCeeeecCCcchHHHHHHHHHHHHHcCCCCEEEEeecCCCcChHHHHHHhhhhccccccCCCCCCCC
Q 011989 198 MASGHVSMKYGFQGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEAS 277 (473)
Q Consensus 198 ~~a~~ia~~lgl~Gp~~~v~~acasg~~Al~~A~~~I~~G~~d~vlv~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (473)
.++++|+..||++||+++|+++|+|++.||.+|+++|++|++|++||+|+|....+..+..|...+.+++. +..|++.|
T Consensus 139 ~~~~~is~~~gl~Gp~~tv~~aCaSsl~Ai~~A~~~i~~G~~d~alvgg~d~~~~p~~~~~f~~~~~ls~~-~~~p~~~~ 217 (249)
T d1j3na1 139 MASAHIAMRYGFTGPSSTVVTACATGADALGSALRMIQLGEADLVLAGGTEAAITPMAIGAFAVMRALSTR-NEEPEKAS 217 (249)
T ss_dssp HHHHHHHHHHTCCSCBCCBCCGGGHHHHHHHHHHHHHHTTSCSEEEEEEEECCCSHHHHHHHHHTTCBCCC-TTCHHHHC
T ss_pred hhhhhhHhhcCCCCCccccccccchHHHHHHHHHHHHHcCCCCeeeecchHhhhCcHHHHHHHhCCcccCC-CCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999854 33456789
Q ss_pred cCccCCCCceeeccceEEEEEccchHHHhcCC
Q 011989 278 RPFDCGRDGFVIGEGSGVLVLEELEHAKKRGA 309 (473)
Q Consensus 278 ~pfd~~~~G~~~geGaaavvL~~~~~A~~~g~ 309 (473)
+|||.+++|+++|||+++||||++++|++||+
T Consensus 218 rPFd~~~dG~v~gEGa~~lvLe~~~~A~~rGA 249 (249)
T d1j3na1 218 RPFTLSRDGFVMGEGAGVLVLEAYEHAKKRGA 249 (249)
T ss_dssp CTTBTTCCCBCBBCEEEEEEEEEHHHHHHTTC
T ss_pred CCccCCCCCEeeEeEEEEEEEccHHHHHHCcC
Confidence 99999999999999999999999999999984
|
| >d1tqya2 c.95.1.1 (A:219-423) Actinorhodin polyketide putative beta-ketoacyl synthase 1, KasA {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Actinorhodin polyketide putative beta-ketoacyl synthase 1, KasA species: Streptomyces coelicolor [TaxId: 1902]
Probab=100.00 E-value=2.2e-46 Score=340.53 Aligned_cols=199 Identities=37% Similarity=0.631 Sum_probs=188.8
Q ss_pred CCCCCCcCccCCCCceeeccceEEEEEccchHHHhcCCeEEEEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHHcCCC
Q 011989 272 TPQEASRPFDCGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQ 351 (473)
Q Consensus 272 ~~~~~~~pfd~~~~G~~~geGaaavvL~~~~~A~~~g~~~~a~i~g~~~~~d~~~~~~~~~~~~~~~~a~~~al~~agl~ 351 (473)
+|++.|||||.+++||++|||++++||++.++|+++|.++|++|.|++.++|+.+.+.+.+....+.++++++|++++++
T Consensus 2 ~P~~~~rpFD~~adG~v~gEGa~~~vL~~~~~A~~~g~~i~a~i~g~~~~~dg~~~~~~~~~~~~~~~~~~~al~~a~i~ 81 (205)
T d1tqya2 2 DPEHASRPFDGTRDGFVLAEGAAMFVLEDYDSALARGARIHAEISGYATRCNAYHMTGLKADGREMAETIRVALDESRTD 81 (205)
T ss_dssp CGGGCCCTTBTTCCCBCEECEEEEEEEEEHHHHHHTTCCCCEEEEEEEEEECSSCSSCCCTTCHHHHHHHHHHHHHHTCC
T ss_pred CCCCCCCCccCCCCCEeeEeeEEEEEEeEHHHHHHCCCceEEEEEeeEccccccccCcccccccccchhhhhHHhhhcCC
Confidence 57899999999999999999999999999999999999999999999999999998888888888999999999999999
Q ss_pred CCCccEEEEcCCCCCCCCHHHHHHHHHHhhcccCCCCceeeccccchhhhHHhHHHHHHHHHHHHHHhCccCCCCCCCCC
Q 011989 352 SHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLAIHHGVAPLTLNLAKP 431 (473)
Q Consensus 352 ~~dId~v~~hgtgt~~~D~~E~~a~~~~~~~~~~~~~~~v~s~k~~~Gh~~~AsG~~~li~~~~~l~~~~ipp~~~~~~~ 431 (473)
++||+||++|||||+.+|.+|..++.++|+... .+++|+++|+++||+++|||++++++++++|++++|||++|++++
T Consensus 82 ~~~i~~ie~hgtGt~~~D~~E~~ai~~~~~~~~--~~~~v~s~K~~~GH~~~AsG~~~li~~~~~l~~g~ipp~~~~~~~ 159 (205)
T d1tqya2 82 ATDIDYINAHGSGTRQNDRHETAAYKRALGEHA--RRTPVSSIKSMVGHSLGAIGSLEIAACVLALEHGVVPPTANLRTS 159 (205)
T ss_dssp GGGCCEEECCCCCCHHHHHHHHHHHHHHTGGGG--GGSCEECTHHHHCBCTTTHHHHHHHHHHHHHHHCEECCBTTCCSB
T ss_pred ccceeeeeccccccccCchhHHHHHHHhhcccc--CCceeeeecccccccccccchhHHHHHHHHHhCCeEcccCCCCCC
Confidence 999999999999999999999999999998643 368999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCccccCCCCCCcEEEEeccccccceeeEEEeecC
Q 011989 432 DPIFNDNFMPLTASKDMPISAALSNSFGFGGTNASLLFTKCQ 473 (473)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~~~l~~s~g~gG~~~~~vl~~~~ 473 (473)
+|.+++++++ .+.+..+.+++++|+|||||+|+|+||++++
T Consensus 160 ~p~~~~~~v~-~~~~~~~~~~a~~~s~GfGG~na~~vl~~~~ 200 (205)
T d1tqya2 160 DPECDLDYVP-LEARERKLRSVLTVGSGFGGFQSAMVLRDAE 200 (205)
T ss_dssp BTTBCSCCCB-SSCEECCCSEEEEEEEETTTEEEEEEEECHH
T ss_pred CCCCCcccCC-CCCcCCCCCEEEEeCCCCCceeEEEEEeeCC
Confidence 9999999998 5667788999999999999999999999863
|
| >d1tqyb2 c.95.1.1 (B:210-403) Actinorhodin polyketide putative beta-ketoacyl synthase 2, KasB {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Actinorhodin polyketide putative beta-ketoacyl synthase 2, KasB species: Streptomyces coelicolor [TaxId: 1902]
Probab=100.00 E-value=1.8e-45 Score=330.93 Aligned_cols=192 Identities=27% Similarity=0.382 Sum_probs=178.2
Q ss_pred CCCCCcCccCCCCceeeccceEEEEEccchHHHhcCC-eEEEEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHHcCCC
Q 011989 273 PQEASRPFDCGRDGFVIGEGSGVLVLEELEHAKKRGA-KIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQ 351 (473)
Q Consensus 273 ~~~~~~pfd~~~~G~~~geGaaavvL~~~~~A~~~g~-~~~a~i~g~~~~~d~~~~~~~~~~~~~~~~a~~~al~~agl~ 351 (473)
|+..|||||.+++|+++|||++++|||+++.|+++|+ ++|++|.|++.++|+.+... .+. ++.++|+++|++++++
T Consensus 2 p~~~~rPFD~~a~G~~~gEGa~~~vLe~~~~A~~rg~~~i~a~i~g~~~~~d~~~~~~-~~~--g~~~~i~~aL~~a~i~ 78 (194)
T d1tqyb2 2 PDRAYLPFDERAAGYVPGEGGAILVLEDSAAAEARGRHDAYGELAGCASTFDPAPGSG-RPA--GLERAIRLALNDAGTG 78 (194)
T ss_dssp GGGSCCTTSTTCCCBCBBCEEEEEEEEEHHHHHHHTCCCCSEEEEEEEEEECCCTTCC-CCC--SHHHHHHHHHHHHTCC
T ss_pred CCCCcCcccCCCCCEeeEeeEEEEEEeEHHHHHhcCCceeeeeeeccccccccccccc-chh--hhhhhhhhhccccccc
Confidence 6789999999999999999999999999999999997 59999999999999865432 223 4688999999999999
Q ss_pred CCCccEEEEcCCCCCCCCHHHHHHHHHHhhcccCCCCceeeccccchhhhHHhHHHHHHHHHHHHHHhCccCCCCCCCCC
Q 011989 352 SHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLAIHHGVAPLTLNLAKP 431 (473)
Q Consensus 352 ~~dId~v~~hgtgt~~~D~~E~~a~~~~~~~~~~~~~~~v~s~k~~~Gh~~~AsG~~~li~~~~~l~~~~ipp~~~~~~~ 431 (473)
++||+||++|||||+.+|.+|..+|.++|+.. .++|+++|+++||+++|||++++++++++|++++|||++|++++
T Consensus 79 ~~di~~v~ahgtGt~~~D~~E~~al~~~f~~~----~~~v~s~K~~~GH~~~AsG~~~li~~~~~l~~g~ipp~~~~~~~ 154 (194)
T d1tqyb2 79 PEDVDVVFADGAGVPELDAAEARAIGRVFGRE----GVPVTVPKTTTGRLYSGGGPLDVVTALMSLREGVIAPTAGVTSV 154 (194)
T ss_dssp GGGCCEEECCCCCSHHHHHHHHHHHHHHHCTT----CSEEECGGGGTCBCGGGHHHHHHHHHHHHHHHTSBCCBCSCCCC
T ss_pred ccceeeeeccccCcccccHHHhhhhhhhhhcc----ccccccccccccccccccccceehhhhhhhhhceeccccCCCCC
Confidence 99999999999999999999999999999764 48999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCccccCCCCCCcEEEEeccccccceeeEEEeec
Q 011989 432 DPIFNDNFMPLTASKDMPISAALSNSFGFGGTNASLLFTKC 472 (473)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~~~l~~s~g~gG~~~~~vl~~~ 472 (473)
+|++++++++ .+++..+++++++|+|||||+|+|+||+||
T Consensus 155 ~~~~~~~~v~-~~~~~~~~~~a~v~s~GfgG~na~~vl~~~ 194 (194)
T d1tqyb2 155 PREYGIDLVL-GEPRSTAPRTALVLARGRWGFNSAAVLRRF 194 (194)
T ss_dssp CGGGCCEECB-SSCBCCCCSEEEEEEEETTTEEEEEEEEEC
T ss_pred CcccCccccC-CCCccCCCCEEEEECcCCCceeEEEEEeeC
Confidence 9999988887 677788899999999999999999999998
|
| >d1e5ma1 c.95.1.1 (A:6-255) Beta-ketoacyl-ACP synthase II {Synechocystis sp. [TaxId: 1143]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Beta-ketoacyl-ACP synthase II species: Synechocystis sp. [TaxId: 1143]
Probab=100.00 E-value=9.8e-44 Score=335.13 Aligned_cols=250 Identities=44% Similarity=0.761 Sum_probs=228.3
Q ss_pred CCceEEEecceecccCCCHHHHHHHHHcCCCceeeCCccccccCCCCccccccccCCcccceeEEecCCCCCCCCCcccC
Q 011989 38 LRRVVVTGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSKVAAVVPCGISSGEFNEDSW 117 (473)
Q Consensus 38 ~~~v~ItG~g~~~p~g~~~~~~~~~l~~G~s~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~~~~ 117 (473)
++||||||||+++|+|.++++||++|++|++++++++.++ ...++..+.+.++. ++..+.
T Consensus 1 ~~rVaItG~G~v~p~G~~~~~~w~~L~~G~~~i~~~~~~~--------------~~~~~~~~~g~~~~------~~~~~~ 60 (250)
T d1e5ma1 1 KKRVVVTGLGAITPIGNTLQDYWQGLMEGRNGIGPITRFD--------------ASDQACRFGGEVKD------FDATQF 60 (250)
T ss_dssp CCCEEEEEEEEEBTTBSSHHHHHHHHHTTCCCEEECCSSC--------------CTTSSCCEEECCCS------CCGGGT
T ss_pred CCeEEEECCeeECCCCCCHHHHHHHHHcCCCeeccCCccc--------------cccccccccceeee------cccccc
Confidence 4799999999999999999999999999999999998765 33455667777765 555556
Q ss_pred CCchhhhccCHHHHHHHHHHHHHHHHcCCCCCCCCCCCceeEEEecCCCChhhHHHHHHHHHHhccccCCCcchhhhhhh
Q 011989 118 LNSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILIN 197 (473)
Q Consensus 118 ~~~~~~~~~~~~~~la~~aa~~Al~dAgl~~~~~~~~~~~gvivg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (473)
++++..+.++++++++++++.+||++||++.+.+ ..++++|++|++.+...........+.+++.....|..++..+.+
T Consensus 61 ~~~~~~~~~d~~~~~~~~a~~~Al~~Agl~~~~~-~~~~~~v~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (250)
T d1e5ma1 61 LDRKEAKRMDRFCHFAVCASQQAINDAKLVINEL-NADEIGVLIGTGIGGLKVLEDQQTILLDKGPSRCSPFMIPMMIAN 139 (250)
T ss_dssp SCHHHHHTSCHHHHHHHHHHHHHHHHHTCCCCTT-TGGGEEEEEECSSCSHHHHHHHHHHHHHHCGGGSCTTHHHHHSTT
T ss_pred cchhhhhhcCcHHHHHHHHHHHHHHHcCCChHhh-cCCcceEEEEEeeccccchhhhhHHHhhcCccccCcccchhhhcc
Confidence 8899999999999999999999999999987766 488999999999999999999998888888899999999999999
Q ss_pred HHHHHHHHhcCCCCCeeeecCCcchHHHHHHHHHHHHHcCCCCEEEEeecCCCcChHHHHHHhhhhccccccCCCCCCCC
Q 011989 198 MASGHVSMKYGFQGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEAS 277 (473)
Q Consensus 198 ~~a~~ia~~lgl~Gp~~~v~~acasg~~Al~~A~~~I~~G~~d~vlv~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (473)
.++++++..||++||+++++++|+|++.||.+|+++|++|++|++||+|+|..+++..+..|..++.++.. ..+|+..|
T Consensus 140 ~~a~~is~~~gl~Gp~~tv~~ACsS~l~Ai~~A~~~i~~G~~d~~lvGg~~~~~~~~~~~~f~~~~~ls~~-~~~p~~~~ 218 (250)
T d1e5ma1 140 MASGLTAINLGAKGPNNCTVTACAAGSNAIGDAFRLVQNGYAKAMICGGTEAAITPLSYAGFASARALSFR-NDDPLHAS 218 (250)
T ss_dssp HHHHHHHHHHTCCSCEECCCCGGGHHHHHHHHHHHHHHTTSCSEEEEEEEECCCSHHHHHHHHHTTCBCCC-TTCGGGTC
T ss_pred hhhhhHHHhccCCCCCccccccchhhhhhhHHHhhcccCCcccccccccchhhcCcHHHHHHHhcCCccCC-CCCCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999998854 44567889
Q ss_pred cCccCCCCceeeccceEEEEEccchHHHhcCC
Q 011989 278 RPFDCGRDGFVIGEGSGVLVLEELEHAKKRGA 309 (473)
Q Consensus 278 ~pfd~~~~G~~~geGaaavvL~~~~~A~~~g~ 309 (473)
||||.+++|+++|||+++||||++++|+++|+
T Consensus 219 rPFD~~~dG~~~gEGa~~~vLe~l~~A~~rGA 250 (250)
T d1e5ma1 219 RPFDKDRDGFVMGEGSGILILEELESALARGA 250 (250)
T ss_dssp CTTBTTCCSBCBBCEEEEEEEEEHHHHHHTTC
T ss_pred CCCCCCCCCEeeEeeEEEEEEeeHHHHHHCcC
Confidence 99999999999999999999999999999984
|
| >d2vbaa1 c.95.1.1 (A:1-253) Beta-ketoacyl-ACP synthase I {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Beta-ketoacyl-ACP synthase I species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=6.3e-42 Score=323.25 Aligned_cols=252 Identities=33% Similarity=0.510 Sum_probs=216.3
Q ss_pred CCceEEEecceecccCCCHHHHHHHHHcCCCceeeCCccccccCCCCccccccccCCcccceeEEecCCCCCCCCCcccC
Q 011989 38 LRRVVVTGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSKVAAVVPCGISSGEFNEDSW 117 (473)
Q Consensus 38 ~~~v~ItG~g~~~p~g~~~~~~~~~l~~G~s~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~~~~ 117 (473)
|+||||||||+++|+|.++++||++|++|+++|++++.++ ...++.+..+.+. +....+
T Consensus 1 m~RVvITG~G~i~p~G~~~~~~w~~L~~G~sgi~~~~~~~--------------~~~~~~~~~~~~~-------~~~~~~ 59 (253)
T d2vbaa1 1 MKRAVITGLGIVSSIGNNQQEVLASLREGRSGITFSQELK--------------DSGMRSHVWGNVK-------LDTTGL 59 (253)
T ss_dssp CCCEEEEEEEEEBTTBSSHHHHHHHHHHTCCCEEECHHHH--------------HTTCSCCEEECCC-------CCCTTS
T ss_pred CCcEEEEccEEECCCCCCHHHHHHHHHcCCCccccCCccc--------------cccCccccccccc-------cccccc
Confidence 5789999999999999999999999999999999998755 2233444444443 344455
Q ss_pred CCchhhhccCHHHHHHHHHHHHHHHHcCCCCCCCCCCCceeEEEecCCCChhhHHHHHHHH-HHhccccCCCcchhhhhh
Q 011989 118 LNSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMI-CEKRLRRLSPFFIPRILI 196 (473)
Q Consensus 118 ~~~~~~~~~~~~~~la~~aa~~Al~dAgl~~~~~~~~~~~gvivg~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 196 (473)
+.....+.+++..++...++.+|++++++......+.+++|+++|+..+...........+ ..++...++|+.++....
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~l~~~~~~~~~r~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (253)
T d2vbaa1 60 IDRKVVRFMSDASIYAFLSMEQAIADAGLSPEAYQNNPRVGLIAGSGGGSPRFQVFGADAMRGPRGLKAVGPYVVTKAMA 139 (253)
T ss_dssp SCHHHHTTCCHHHHHHHHHHHHHHHHHTCCHHHHTTCTTEEEEEECSSCCHHHHHHHHHHHTSTTTHHHHCTTHHHHHST
T ss_pred ccchhhccchhhhhhhhHHHHHHHHHhhccchhccCCCCEEEEeccccccccccccccccccccCCccccCchhhhcccc
Confidence 6788889999999999999999999999976555567899999999998877655544443 334566788999999999
Q ss_pred hHHHHHHHHhcCCCCCeeeecCCcchHHHHHHHHHHHHHcCCCCEEEEeecCCCcChHHHHHHhhhhccccccCCCCCCC
Q 011989 197 NMASGHVSMKYGFQGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEA 276 (473)
Q Consensus 197 ~~~a~~ia~~lgl~Gp~~~v~~acasg~~Al~~A~~~I~~G~~d~vlv~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (473)
+.++++|++.||++||+++++++|+|++.||.+|+++|+.|++|++||+|+|.+ .+.....+..++.++......|+..
T Consensus 140 ~~~a~~is~~~g~~Gp~~~i~taCaSsl~Ai~~A~~~i~~G~~d~alvgg~~~~-~~~~~~~~~~~~~ls~~~~~~P~~~ 218 (253)
T d2vbaa1 140 SGVSACLATPFKIHGVNYSISSACATSAHCIGNAVEQIQLGKQDIVFAGGGEEL-CWEMACEFDAMGALSTKYNDTPEKA 218 (253)
T ss_dssp THHHHHHHTTTTCCSCEEEEECGGGHHHHHHHHHHHHHHTTSCSEEEEEEEECC-CHHHHHHHHHTTCBCCSCTTSGGGS
T ss_pred ccccceeccccCcccceeeeeccchhHHHHHHHHHHhcchhccceeeecchhhh-hcchhhhHHHHHHHhcCCCCCCCCC
Confidence 999999999999999999999999999999999999999999999999999975 4445677888898887777778899
Q ss_pred CcCccCCCCceeeccceEEEEEccchHHHhcCCeE
Q 011989 277 SRPFDCGRDGFVIGEGSGVLVLEELEHAKKRGAKI 311 (473)
Q Consensus 277 ~~pfd~~~~G~~~geGaaavvL~~~~~A~~~g~~~ 311 (473)
|||||.+++|+++|||+++||||++++|+++|++|
T Consensus 219 ~rPFD~~~~G~v~gEGa~~lvLe~le~A~~rGa~I 253 (253)
T d2vbaa1 219 SRTYDAHRDGFVIAGGGGMVVVEELEHALARGAHI 253 (253)
T ss_dssp CCTTBTTCCSBCBBCEEEEEEEEEHHHHHHTTCCC
T ss_pred CCCCCCCCCCEeeeeEEEEEEEccHHHHHHccCcC
Confidence 99999999999999999999999999999999875
|
| >d2ix4a1 c.95.1.1 (A:31-300) Beta-ketoacyl-ACP synthase II {Thale cress (Arabidopsis thaliana), mitochondrial isoform [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Beta-ketoacyl-ACP synthase II species: Thale cress (Arabidopsis thaliana), mitochondrial isoform [TaxId: 3702]
Probab=100.00 E-value=1.6e-41 Score=323.42 Aligned_cols=270 Identities=78% Similarity=1.260 Sum_probs=232.7
Q ss_pred CceEEEecceecccCCCHHHHHHHHHcCCCceeeCCccccccCCCCccccccccCCcccceeEEecCCCCCCCCCcccCC
Q 011989 39 RRVVVTGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSKVAAVVPCGISSGEFNEDSWL 118 (473)
Q Consensus 39 ~~v~ItG~g~~~p~g~~~~~~~~~l~~G~s~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~~~~~ 118 (473)
+||||||||+++|+|.++++||++|++|+++|++++..+|+...|+.+.........+.+++++++.......|+...+
T Consensus 1 rRVvITG~G~vsP~G~~~ee~w~~L~~G~s~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 79 (270)
T d2ix4a1 1 RRVVVTGLGMVTPLGRGVETTWRRLIDGECGIRGLTLDDLKMKSFDEETKLYTFDQLSSKVAAFVPYGSNPGEFDEALW- 79 (270)
T ss_dssp CCEEEEEEEEEETTEESHHHHHHHHHTTCCCEEECCGGGGCCTTSCHHHHHHHHHTCSCCEEECCCBSSSTTSBCHHHH-
T ss_pred CeEEEECceeECCCcCCHHHHHHHHHcCCCeeccCChhhcccccccccccccccccccceeeeecccccCchhhhHHHh-
Confidence 5899999999999999999999999999999999999999888887776655556677778888876322333443332
Q ss_pred CchhhhccCHHHHHHHHHHHHHHHHcCCCCCCCCCCCceeEEEecCCCChhhHHHHHHHHHHhccccCCCcchhhhhhhH
Q 011989 119 NSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINM 198 (473)
Q Consensus 119 ~~~~~~~~~~~~~la~~aa~~Al~dAgl~~~~~~~~~~~gvivg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (473)
.....+++..+.+..+..+|+.+++....+.....++++.++.........................|+.+++.+.+.
T Consensus 80 --~~~~~~~~~~~~a~~a~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (270)
T d2ix4a1 80 --LNSKAVANFIGYAVCAADEALRDAEWLPTEEEEKERTGVSIGGGIGSICDIVEAAQLICEKRLRRLSPFFIPKILVNM 157 (270)
T ss_dssp --SCSTTCCHHHHHHHHHHHHHHHHTTCCCCSHHHHHTEEEEEEESSCCHHHHHHHHHHHHTTCGGGCCTTHHHHHCTTH
T ss_pred --hhhhhhhhhHHHHHHHHHHHHHHhhhccccccccccceEEeeccccccccchhhcchhhhccccccCcccCcccccch
Confidence 234467788899999999999999986543333566788887777777777777777777778889999999999999
Q ss_pred HHHHHHHhcCCCCCeeeecCCcchHHHHHHHHHHHHHcCCCCEEEEeecCCCcChHHHHHHhhhhccccccCCCCCCCCc
Q 011989 199 ASGHVSMKYGFQGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASR 278 (473)
Q Consensus 199 ~a~~ia~~lgl~Gp~~~v~~acasg~~Al~~A~~~I~~G~~d~vlv~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (473)
++++|++.||++||+++|+++|+|++.||.+|+++|++|++|++||+|+|....|..+..|...+.++...+..|+..||
T Consensus 158 ~a~~is~~~~l~Gp~~~v~~aCaSsl~Ai~~A~~~l~~G~~d~aivgg~~~~~~p~~~~~~~~~~~ls~~~~~~p~~~~r 237 (270)
T d2ix4a1 158 ASGHVSMKYGFQGPNHAAVTACATGAHSIGDATRMIQFGDADVMVAGGTESSIDALSVAGFSRSRALSTKFNSSPQEASR 237 (270)
T ss_dssp HHHHHHHHHTCCSCEECBCCGGGHHHHHHHHHHHHHHHTSCSEEEEEEEECCCSHHHHHHHHHTTCBCCTTTTCGGGSCC
T ss_pred hHHHHHHHhCCCCCCcccccccchhhHHHHHHHHHHHcCCCCeeccccchhhhhhhhHHHHHhcccccCCCCCCCCCccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999876777889999
Q ss_pred CccCCCCceeeccceEEEEEccchHHHhcCCeE
Q 011989 279 PFDCGRDGFVIGEGSGVLVLEELEHAKKRGAKI 311 (473)
Q Consensus 279 pfd~~~~G~~~geGaaavvL~~~~~A~~~g~~~ 311 (473)
|||.+++|+++|||+++||||++++|+++|++|
T Consensus 238 PFD~~a~G~v~gEGaa~~vLe~l~~A~~rG~~I 270 (270)
T d2ix4a1 238 PFDCDRDGFVIGEGSGVIVLEEYEHAKRRGAKI 270 (270)
T ss_dssp TTBTTCCSBCBBCEEEEEEEEEHHHHHHTTCCC
T ss_pred CCCCCCCCEeeEeeEEEEEEeeHHHHHHccCCC
Confidence 999999999999999999999999999999875
|
| >d1e5ma2 c.95.1.1 (A:256-416) Beta-ketoacyl-ACP synthase II {Synechocystis sp. [TaxId: 1143]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Beta-ketoacyl-ACP synthase II species: Synechocystis sp. [TaxId: 1143]
Probab=100.00 E-value=2.1e-39 Score=282.39 Aligned_cols=161 Identities=49% Similarity=0.773 Sum_probs=153.2
Q ss_pred eEEEEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEEEEcCCCCCCCCHHHHHHHHHHhhcccCCCCc
Q 011989 310 KIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSL 389 (473)
Q Consensus 310 ~~~a~i~g~~~~~d~~~~~~~~~~~~~~~~a~~~al~~agl~~~dId~v~~hgtgt~~~D~~E~~a~~~~~~~~~~~~~~ 389 (473)
+||++|.|++.++|+++.+.|++++.++.+++++||++++++|+|||||++|||||+.+|.+|..+++++|+... .++
T Consensus 1 rIya~i~G~~~~~Dg~~~~~~~p~g~~~~~~i~~Al~~a~i~~~~i~~v~~HgtGT~~~D~~E~~al~~vf~~~~--~~~ 78 (161)
T d1e5ma2 1 KIYGEMVGYAMTCDAYHITAPVPDGRGATRAIAWALKDSGLKPEMVSYINAHGTSTPANDVTETRAIKQALGNHA--YNI 78 (161)
T ss_dssp CCCEEEEEEEEEECCSCSSSCCTTCHHHHHHHHHHHHHHTCCGGGCCEEECCCCSCHHHHHHHHHHHHHHHGGGG--GGS
T ss_pred CEEEEEeeEEEeCCCCCCCCCCcCHHHHHHHHHHHHHHcCCChhhcceEEEeccCCcccchHHhhhhhhccccCC--Ccc
Confidence 589999999999999999999999999999999999999999999999999999999999999999999998653 468
Q ss_pred eeeccccchhhhHHhHHHHHHHHHHHHHHhCccCCCCCCCCCCCCCCCCCCccccCCCCCCcEEEEeccccccceeeEEE
Q 011989 390 AFSSTKGAIGHLLGAAGAVEAIFAVLAIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPISAALSNSFGFGGTNASLLF 469 (473)
Q Consensus 390 ~v~s~k~~~Gh~~~AsG~~~li~~~~~l~~~~ipp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~g~gG~~~~~vl 469 (473)
+|+++|+++||+++|||++++++++++|++++|||++|+++|+|.++...++ .+.+..+.+++++|||||||+|+|+||
T Consensus 79 ~v~s~K~~~GH~~~AsG~~~l~~~l~~~~~g~ipp~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~~nsfGfGG~Na~lvl 157 (161)
T d1e5ma2 79 AVSSTKSMTGHLLGGSGGIEAVATVMAIAEDKVPPTINLENPDPECDLDYVP-GQSRALIVDVALSNSFGFGGHNVTLAF 157 (161)
T ss_dssp EEECTHHHHCBCGGGHHHHHHHHHHHHHHHTEECCBTTCSSBCTTCCSCCCB-SSCEECCCSEEEEEEEETTTEEEEEEE
T ss_pred eEEecccccccccccchhhHHHHhHHhcccCeeCCccCCCCCCCCCCcccCc-CcccCCCCCEEEEeCcCcCcEeEEEEE
Confidence 9999999999999999999999999999999999999999999999998888 667778899999999999999999999
Q ss_pred eecC
Q 011989 470 TKCQ 473 (473)
Q Consensus 470 ~~~~ 473 (473)
+||+
T Consensus 158 ~~y~ 161 (161)
T d1e5ma2 158 KKYQ 161 (161)
T ss_dssp ECCC
T ss_pred eeeC
Confidence 9996
|
| >d1ox0a2 c.95.1.1 (A:252-409) Beta-ketoacyl-ACP synthase II {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Beta-ketoacyl-ACP synthase II species: Streptococcus pneumoniae [TaxId: 1313]
Probab=100.00 E-value=2.2e-39 Score=281.18 Aligned_cols=158 Identities=44% Similarity=0.653 Sum_probs=151.6
Q ss_pred eEEEEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEEEEcCCCCCCCCHHHHHHHHHHhhcccCCCCc
Q 011989 310 KIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSL 389 (473)
Q Consensus 310 ~~~a~i~g~~~~~d~~~~~~~~~~~~~~~~a~~~al~~agl~~~dId~v~~hgtgt~~~D~~E~~a~~~~~~~~~~~~~~ 389 (473)
+||++|.|++.++|+.+++.|++.+.++.++|++||++++++|+|||||++|||||+++|.+|..+++++|+. ++
T Consensus 1 tIyaei~G~~~~~Dg~~~~~p~p~g~~~~~~~~~al~~a~l~p~~i~~v~aHgtgT~~~D~~E~~ai~~~fg~-----~~ 75 (158)
T d1ox0a2 1 TILAEVVGYGNTCDAYHMTSPHPEGQGAIKAIKLALEEAEISPEQVAYVNAHGTSTPANEKGESGAIVAVLGK-----EV 75 (158)
T ss_dssp CCCEEEEEEEEEECCSCSSSCCTTCHHHHHHHHHHHHHHTCCGGGCCCEECCCCSCHHHHHHHHHHHHHHHCS-----SS
T ss_pred CEEEEEEEEEEcCCCCCCcCCCCCHHHHHHHHHHhhccccccceeeeEEeeeccccccchhHHHHHHHHhcCC-----cc
Confidence 5899999999999999999999999999999999999999999999999999999999999999999999985 48
Q ss_pred eeeccccchhhhHHhHHHHHHHHHHHHHHhCccCCCCCCCCCCCCCCCCCCccccCCCCCCcEEEEeccccccceeeEEE
Q 011989 390 AFSSTKGAIGHLLGAAGAVEAIFAVLAIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPISAALSNSFGFGGTNASLLF 469 (473)
Q Consensus 390 ~v~s~k~~~Gh~~~AsG~~~li~~~~~l~~~~ipp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~g~gG~~~~~vl 469 (473)
+++++|+++||+++|||++++++++++|++++|||++|+++++|.+++++++ .+++..+.+++++|||||||+|+|+||
T Consensus 76 ~v~s~Ks~iGH~~~asG~~~l~~~l~~l~~g~iPp~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~~nsfGfGG~Na~lvl 154 (158)
T d1ox0a2 76 PVSSTKSFTGHLLGAAGAVEAIVTIEAMRHNFVPMTAGTSEVSDYIEANVVY-GQGLEKEIPYAISNTFGFGGHNAVLAF 154 (158)
T ss_dssp EEECTHHHHCBCGGGHHHHHHHHHHHHHHHTEECCBSSCCSBCTTCCSEECB-SSCEECCCSEEEEEEEETTTEEEEEEE
T ss_pred cCcCcccccccchhhhhhhhhcccccccccceeccccCCCCCCcccCccccc-CccccCCCCEEEEeCcCCCcEeEEEEE
Confidence 9999999999999999999999999999999999999999999999998888 667778899999999999999999999
Q ss_pred eecC
Q 011989 470 TKCQ 473 (473)
Q Consensus 470 ~~~~ 473 (473)
+|||
T Consensus 155 ~~~~ 158 (158)
T d1ox0a2 155 KRWE 158 (158)
T ss_dssp ECCC
T ss_pred EecC
Confidence 9997
|
| >d2ix4a2 c.95.1.1 (A:301-461) Beta-ketoacyl-ACP synthase II {Thale cress (Arabidopsis thaliana), mitochondrial isoform [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Beta-ketoacyl-ACP synthase II species: Thale cress (Arabidopsis thaliana), mitochondrial isoform [TaxId: 3702]
Probab=100.00 E-value=4.9e-38 Score=273.89 Aligned_cols=161 Identities=78% Similarity=1.179 Sum_probs=151.8
Q ss_pred EEEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEEEEcCCCCCCCCHHHHHHHHHHhhcccCCCCcee
Q 011989 312 YAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAF 391 (473)
Q Consensus 312 ~a~i~g~~~~~d~~~~~~~~~~~~~~~~a~~~al~~agl~~~dId~v~~hgtgt~~~D~~E~~a~~~~~~~~~~~~~~~v 391 (473)
|++|.|++.++|+++++.|++.++++..+++++|++++++|+||||||+|||||+.+|.+|..+++++|+......+++|
T Consensus 1 Y~~i~G~~~~~Dg~~~t~p~~~g~~~~~~~~~al~~a~~~~~di~yveaHGtGT~~gD~~E~~al~~~~~~~~~~~~~~i 80 (161)
T d2ix4a2 1 YAELCGYGMSGDAHHITQPPEDGKGAVLAMTRALRQSGLCPNQIDYVNAHATSTPIGDAVEARAIKTVFSEHATSGTLAF 80 (161)
T ss_dssp CEEEEEEEEEECCSCSSCCCTTCHHHHHHHHHHHHHHTCCGGGCCEEECCCCSCHHHHHHHHHHHHHHHTHHHHTSCSEE
T ss_pred CeEEEEEEEcCCCCCCcCCChhHHHHHHHHHHHHHhcCCCccccCEEEEeccCCCCCcHHHHhhhHhhhcccccccceee
Confidence 78999999999999999999999999999999999999999999999999999999999999999999987544457899
Q ss_pred eccccchhhhHHhHHHHHHHHHHHHHHhCccCCCCCCCCCCCCCCCCCCccccCCCCCCcEEEEeccccccceeeEEEee
Q 011989 392 SSTKGAIGHLLGAAGAVEAIFAVLAIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPISAALSNSFGFGGTNASLLFTK 471 (473)
Q Consensus 392 ~s~k~~~Gh~~~AsG~~~li~~~~~l~~~~ipp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~g~gG~~~~~vl~~ 471 (473)
+++|+++||+++|||++++++++++|+++++||++|+++++|.++...+++...+...++++++|||||||+|+|+||++
T Consensus 81 ~s~K~~~GH~~~AsG~~~li~~~l~l~~~~ipp~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~nsfGfgG~Na~lvl~~ 160 (161)
T d2ix4a2 81 SSTKGATGHLLGAAGAVEAIFSILAIHHGVAPMTLNVKNPDPIFDKRFMPLTTSKKMLVRTAMSNSFGFGGTNASLLFAS 160 (161)
T ss_dssp ECTHHHHCBCGGGHHHHHHHHHHHHHHHTEECCCTTCSSBCTTCCSSSCCCSSCEECCCSEEEEEEEETTTEEEEEEEEC
T ss_pred eccccccCCccchHHHHHHHHHHHHHhcCCCCCccCCCCCCcccCcccCccccCCCCCcCEEEEeCCcccceeEEEEEEe
Confidence 99999999999999999999999999999999999999999999988887667777789999999999999999999997
Q ss_pred c
Q 011989 472 C 472 (473)
Q Consensus 472 ~ 472 (473)
.
T Consensus 161 ~ 161 (161)
T d2ix4a2 161 I 161 (161)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >d2gfva2 c.95.1.1 (A:252-412) Beta-ketoacyl-ACP synthase II {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Beta-ketoacyl-ACP synthase II species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2.2e-37 Score=269.97 Aligned_cols=161 Identities=51% Similarity=0.814 Sum_probs=148.6
Q ss_pred eEEEEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEEEEcCCCCCCCCHHHHHHHHHHhhcccCCCCc
Q 011989 310 KIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSL 389 (473)
Q Consensus 310 ~~~a~i~g~~~~~d~~~~~~~~~~~~~~~~a~~~al~~agl~~~dId~v~~hgtgt~~~D~~E~~a~~~~~~~~~~~~~~ 389 (473)
+||++|.|++.++|+.+.+.|++++.++.++++++|++++++|+||||||+|||||+.+|.+|..|+.++|+... .++
T Consensus 1 rIya~I~G~~~~~Dg~~~~~~~p~g~~~~~~~~~al~~a~i~p~~i~~ie~HgtGT~~gD~~E~~Al~~~f~~~~--~~~ 78 (161)
T d2gfva2 1 KIYAELVGFGMSSDAYHMTSPPENGAGAALAMANALRDAGIEASQIGYVNAHGTSTPAGDKAEAQAVKTIFGEAA--SRV 78 (161)
T ss_dssp CCCEEEEEEEEEECCSCSSSCCTTCHHHHHHHHHHHHHHTCCGGGCCEEECCCCSCHHHHHHHHHHHHHHHGGGG--TTS
T ss_pred CEEEEEeeEEEeCCCCCCCCCCCCHHHHHHHHHHhHhhcccCcceEEEEEeecccCcccHHHHHHHHHHHhcccc--ccc
Confidence 589999999999999999999999999999999999999999999999999999999999999999999998653 468
Q ss_pred eeeccccchhhhHHhHHHHHHHHHHHHHHhCccCCCCCCCCCCCCCCCCCCccccCCCCCCcEEEEeccccccceeeEEE
Q 011989 390 AFSSTKGAIGHLLGAAGAVEAIFAVLAIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPISAALSNSFGFGGTNASLLF 469 (473)
Q Consensus 390 ~v~s~k~~~Gh~~~AsG~~~li~~~~~l~~~~ipp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~g~gG~~~~~vl 469 (473)
+++++|+++||+++|||++++++++++|++++|||++|++++++.+.....+....+..+++++++|||||||+|+|+||
T Consensus 79 ~i~s~Ks~~GH~~~AsG~~~li~~ll~l~~~~ipp~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~vnsfGfgG~Na~lil 158 (161)
T d2gfva2 79 LVSSTKSMTGHLLGAAGAVESIYSILALRDQAVPPTINLDNPDEGCDLDFVPHEARQVSGMEYTLCNSFGFGGTNGSLIF 158 (161)
T ss_dssp EEECTHHHHCBCGGGHHHHHHHHHHHHHHSCEECCBTTCSSBCTTCCSBCCBSSCEECSSCCEEEEEEEEGGGEEEEEEE
T ss_pred eeccccccccccHHHHHHHHHHHHHHHhcCCEecccccccccccccccccccccCccCCCCcEEEEeCcCccceeEEEEE
Confidence 99999999999999999999999999999999999999999999988776653333445689999999999999999999
Q ss_pred eec
Q 011989 470 TKC 472 (473)
Q Consensus 470 ~~~ 472 (473)
+|.
T Consensus 159 ~~~ 161 (161)
T d2gfva2 159 KKI 161 (161)
T ss_dssp ECC
T ss_pred EEC
Confidence 973
|
| >d1j3na2 c.95.1.1 (A:250-408) Beta-ketoacyl-ACP synthase II {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Beta-ketoacyl-ACP synthase II species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=1.6e-37 Score=269.96 Aligned_cols=159 Identities=58% Similarity=0.918 Sum_probs=149.6
Q ss_pred eEEEEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEEEEcCCCCCCCCHHHHHHHHHHhhcccCCCCc
Q 011989 310 KIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSL 389 (473)
Q Consensus 310 ~~~a~i~g~~~~~d~~~~~~~~~~~~~~~~a~~~al~~agl~~~dId~v~~hgtgt~~~D~~E~~a~~~~~~~~~~~~~~ 389 (473)
+||++|.|++.++|+.+.+.|+++++++..+++++|+++|++|+|||||++|||||+.+|.+|..+++++|+... .++
T Consensus 1 rIya~I~G~~~~~Dg~~~~~~~p~g~~~~~~~~~al~~agi~p~~I~~ie~HgtGT~~gD~~E~~Al~~~f~~~~--~~~ 78 (159)
T d1j3na2 1 RIYAELVGFGRSADAHHITEPHPEGKGAALAMARALKDAGIAPEQVGYINAHGTSTPVGDRAEVLAIKRVFGDHA--KRL 78 (159)
T ss_dssp CCCEEEEEEEEEECCSCSSCCCTTCHHHHHHHHHHHHHHTCCGGGCCEEECCCCSCHHHHHHHHHHHHHHHHHHH--TTC
T ss_pred CEEEEEeEEEEeCCCCCCCCCCcCHHHHHHHhhccHhhcCCCHHHcCeEeccccCCccchHHHHHHHHHHHHhcC--CCc
Confidence 589999999999999999999999999999999999999999999999999999999999999999999997643 368
Q ss_pred eeeccccchhhhHHhHHHHHHHHHHHHHHhCccCCCCCCCCCCCCCCCCCCccccCCCCCCcEEEEeccccccceeeEEE
Q 011989 390 AFSSTKGAIGHLLGAAGAVEAIFAVLAIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPISAALSNSFGFGGTNASLLF 469 (473)
Q Consensus 390 ~v~s~k~~~Gh~~~AsG~~~li~~~~~l~~~~ipp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~g~gG~~~~~vl 469 (473)
+|+++|+++||+++|||++++++++++|++++|||++|++++++++++.+++ +++..+++++++|+|||||+|+|+||
T Consensus 79 ~i~s~K~~~GH~~~asG~~~li~~~~~l~~~~ipp~~~~~~~~~~~~~~~~~--~~~~~~~~~a~v~sfGfgG~Na~~vl 156 (159)
T d1j3na2 79 MVSSTKSMIGHLLGAAGAVEAIATVQALYHGVIPPTINLEDPDPELDLDFVP--EPREAKVDYALSNSFAFGGHNAVLAF 156 (159)
T ss_dssp EEECTHHHHCBCGGGHHHHHHHHHHHHHHHTEECCCTTTTSBCTTSCSBCCS--SCEECCCSEEEEEEECTTSEEEEEEE
T ss_pred eEecccccccccccccccchhhhhhhHhhCCEeccccccccccceeeeeccC--cccCCCCCEEEEeCCCCCceeEEEEE
Confidence 9999999999999999999999999999999999999999999999988886 45667899999999999999999999
Q ss_pred eec
Q 011989 470 TKC 472 (473)
Q Consensus 470 ~~~ 472 (473)
+|.
T Consensus 157 ~kv 159 (159)
T d1j3na2 157 KRV 159 (159)
T ss_dssp ECC
T ss_pred EEC
Confidence 984
|
| >d1tqyb1 c.95.1.1 (B:2-209) Actinorhodin polyketide putative beta-ketoacyl synthase 2, KasB {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Actinorhodin polyketide putative beta-ketoacyl synthase 2, KasB species: Streptomyces coelicolor [TaxId: 1902]
Probab=100.00 E-value=2.3e-35 Score=269.62 Aligned_cols=206 Identities=25% Similarity=0.385 Sum_probs=190.8
Q ss_pred ceEEEecceecccCCCHHHHHHHHHcCCCceeeCCccccccCCCCccccccccCCcccceeEEecCCCCCCCCCcccCCC
Q 011989 40 RVVVTGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSKVAAVVPCGISSGEFNEDSWLN 119 (473)
Q Consensus 40 ~v~ItG~g~~~p~g~~~~~~~~~l~~G~s~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~~~~~~ 119 (473)
.|||||||+++|+|.++++||++|++|++++++++.++ ...++.++++.+++ |++..+++
T Consensus 1 ~VvITG~G~vsp~g~~~~~~w~~L~~G~sgi~~~~~~~--------------~~~~~~~~~~~~~~------~~~~~~~~ 60 (208)
T d1tqyb1 1 SVLITGVGVVAPNGLGLAPYWSAVLDGRHGLGPVTRFD--------------VSRYPATLAGQIDD------FHAPDHIP 60 (208)
T ss_dssp CEEEEEEEEEETTEESHHHHHHHHHTTCCCEEECTTTT--------------GGGSSCCEEECCCS------CCHHHHSC
T ss_pred CEEEEcceeECCCcCCHHHHHHHHHcCCCceecCcccC--------------chhccccccccccc------ccccccCC
Confidence 38999999999999999999999999999999998765 34456677787776 77777789
Q ss_pred chhhhccCHHHHHHHHHHHHHHHHcCCCCCCCCCCCceeEEEecCCCChhhHHHHHHHHHHhccccCCCcchhhhhhhHH
Q 011989 120 SKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMA 199 (473)
Q Consensus 120 ~~~~~~~~~~~~la~~aa~~Al~dAgl~~~~~~~~~~~gvivg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (473)
+++.+.|+|.+++++.++.+||+|||+++.++ ++.++++++|++.+........+..+.....+...|+.++..+.+..
T Consensus 61 ~~~~~~~~~~~~~~~~a~~~Al~~Ag~~~~~~-~~~~~g~~~g~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 139 (208)
T d1tqyb1 61 GRLLPQTDPSTRLALTAADWALQDAKADPESL-TDYDMGVVTANACGGFDFTHREFRKLWSEGPKSVSVYESFAWFYAVN 139 (208)
T ss_dssp TTTGGGCCHHHHHHHHHHHHHHHHTTCCGGGS-CGGGEEEEEECSSCSHHHHHHHHHHHHHTCGGGSCTTHHHHSSTTHH
T ss_pred hhHhhccccccccccccccccchhhhcccccc-cccccccccccccccccccchhhhhhccccccccccccccccccccc
Confidence 99999999999999999999999999988776 47899999999999999999999999888889999999999999999
Q ss_pred HHHHHHhcCCCCCeeeecCCcchHHHHHHHHHHHHHcCCCCEEEEeecCCCcChHHHHHHhhhhcccc
Q 011989 200 SGHVSMKYGFQGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTT 267 (473)
Q Consensus 200 a~~ia~~lgl~Gp~~~v~~acasg~~Al~~A~~~I~~G~~d~vlv~g~d~~~~~~~~~~~~~~~~~~~ 267 (473)
+++|+..||++||+++++++|+|++.||.+|+++|+.| +|+|||+|+|..++|..+..|.+++++++
T Consensus 140 a~~ia~~~gl~Gp~~tv~tACaS~l~Ai~~A~~~I~~G-~d~~lvGG~d~~l~p~~~~~f~~~~~lSt 206 (208)
T d1tqyb1 140 TGQISIRHGMRGPSSALVAEQAGGLDALGHARRTIRRG-TPLVVSGGVDSALDPWGWVSQIASGRIST 206 (208)
T ss_dssp HHHHHHHHTCCSSCEEEECGGGHHHHHHHHHHHHHHHT-CSEEEEEEEECCCSHHHHHHHHTTSCBCC
T ss_pred cchhhhcccccceeeeccccccHHHHHHHHHHHHHHcC-CCEEEECccccccCHHHHHHHHHcCCCCC
Confidence 99999999999999999999999999999999999999 99999999999999999999999999874
|
| >d1tqya1 c.95.1.1 (A:3-218) Actinorhodin polyketide putative beta-ketoacyl synthase 1, KasA {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Actinorhodin polyketide putative beta-ketoacyl synthase 1, KasA species: Streptomyces coelicolor [TaxId: 1902]
Probab=100.00 E-value=1.2e-33 Score=259.64 Aligned_cols=208 Identities=28% Similarity=0.448 Sum_probs=181.0
Q ss_pred CceEEEecceecccCCCHHHHHHHHHcCCCceeeCCccccccCCCCccccccccCCcccceeEEecCCCCCCCCCccc-C
Q 011989 39 RRVVVTGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSKVAAVVPCGISSGEFNEDS-W 117 (473)
Q Consensus 39 ~~v~ItG~g~~~p~g~~~~~~~~~l~~G~s~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~~~-~ 117 (473)
+||||||||+++|+|.++++||++|++|+++|++++.+++ ......+....+ ||... +
T Consensus 1 rRVvItG~G~v~p~G~~~~~~w~~L~~G~s~i~~~~~~~~--------------~~~~~~~~~~~~-------~~~~~~~ 59 (216)
T d1tqya1 1 RRVVITGVGVRAPGGNGTRQFWELLTSGRTATRRISFFDP--------------SPYRSQVAAEAD-------FDPVAEG 59 (216)
T ss_dssp CCEEEEEEEEEETTEESHHHHHHHHHHTCCCEEECCSSCC--------------TTSSCCEEECCC-------CCHHHHT
T ss_pred CeEEEEeceeECCCCCCHHHHHHHHHcCCCEeecCCccCC--------------Cccccccccccc-------ccccccc
Confidence 5899999999999999999999999999999999987551 222333333333 55444 4
Q ss_pred CCchhhhccCHHHHHHHHHHHHHHHHcCCCCCCCCCCCceeEEEecCCCChhhHHHHHHHHHHhcc------ccCCCcch
Q 011989 118 LNSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRL------RRLSPFFI 191 (473)
Q Consensus 118 ~~~~~~~~~~~~~~la~~aa~~Al~dAgl~~~~~~~~~~~gvivg~~~g~~~~~~~~~~~~~~~~~------~~~~~~~~ 191 (473)
+++++.+.+++.++|++.|+++||+|||+++++. ...+++++++++.+........+..+...+. ....+..+
T Consensus 60 ~~~~~~~~~~~~~~~~l~aa~~Al~dAg~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (216)
T d1tqya1 60 FGPRELDRMDRASQFAVACAREAFAASGLDPDTL-DPARVGVSLGSAVAAATSLEREYLLLSDSGRDWEVDAAWLSRHMF 138 (216)
T ss_dssp CCHHHHHHSCHHHHHHHHHHHHHHHHHTCCTTTC-CGGGEEEEEECSSTTHHHHHHHHHHHHTTTTCSSCCGGGCCTTTH
T ss_pred cChhhhcccCcchhhHHHHHHHHHHHhcCCcccc-ccccccccccccccccchhhHHHhhhhhcccccccchhhcccccc
Confidence 8999999999999999999999999999988766 4789999999999999988888887776543 35667778
Q ss_pred hhhhhhHHHHHHHHhcCCCCCeeeecCCcchHHHHHHHHHHHHHcCCCCEEEEeecCCCcChHHHHHHhhhhccccc
Q 011989 192 PRILINMASGHVSMKYGFQGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTK 268 (473)
Q Consensus 192 ~~~~~~~~a~~ia~~lgl~Gp~~~v~~acasg~~Al~~A~~~I~~G~~d~vlv~g~d~~~~~~~~~~~~~~~~~~~~ 268 (473)
+..+++.+++++++.||++||+++++++|+|++.||.+|+++|+.|++|+|||||+|..++|..+..|+++++++.+
T Consensus 139 ~~~~~~~~a~~ia~~~g~~Gp~~tv~~ACaS~~~Ai~~A~~~i~~G~~d~~ivGG~d~~l~p~~~~~F~~~~alS~~ 215 (216)
T d1tqya1 139 DYLVPSVMPAEVAWAVGAEGPVTMVSTGCTSGLDSVGNAVRAIEEGSADVMFAGAADTPITPIVVACFDAIRATTAR 215 (216)
T ss_dssp HHHSTTHHHHHHHHHHTCCSCEEEECCGGGHHHHHHHHHHHHHHHTSCSEEEEEEEECCCSHHHHHHHHHTTCBCCC
T ss_pred cccCchHHHHHHHHhcCccccceeeccccchHHHHHHHHHHHHHcCCCCEEEEeeeccccCHHHHHHHHHCCCCCcC
Confidence 88889999999999999999999999999999999999999999999999999999999999999999999999853
|
| >d2vbaa2 c.95.1.1 (A:254-404) Beta-ketoacyl-ACP synthase I {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Beta-ketoacyl-ACP synthase I species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2.1e-34 Score=247.51 Aligned_cols=151 Identities=43% Similarity=0.702 Sum_probs=137.3
Q ss_pred EEEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEEEEcCCCCCCCCHHHHHHHHHHhhcccCCCCcee
Q 011989 312 YAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAF 391 (473)
Q Consensus 312 ~a~i~g~~~~~d~~~~~~~~~~~~~~~~a~~~al~~agl~~~dId~v~~hgtgt~~~D~~E~~a~~~~~~~~~~~~~~~v 391 (473)
|++|.|++.++|+.+++.|+ ++++.++++++|+.+ +.|||||++|||||+++|.+|..|++++|+.. .++|
T Consensus 1 Yaei~G~g~~~Dg~~~taP~--~~~~~~~~~~al~~a---~~~I~~v~aHgtGT~~gD~~E~~Al~~vfg~~----~~~v 71 (151)
T d2vbaa2 1 YAEIVGYGATSDGADMVAPS--GEGAVRCMKMAMHGV---DTPIDYLNSHGTSTPVGDVKELAAIREVFGDK----SPAI 71 (151)
T ss_dssp CEEEEEEEEEECCSCTTSCC--SHHHHHHHHHHHTTC---CSCCCEEECCCCSCHHHHHHHHHHHHHHHTTC----CCEE
T ss_pred CEEEEEEEEecCCCCCCCcC--HHHHHHHHHHhhhcC---cccceeEEEeccCCccccHHHHHHHHHHhCCC----Cccc
Confidence 78999999999999888875 567899999999876 57999999999999999999999999999864 5789
Q ss_pred eccccchhhhHHhHHHHHHHHHHHHHHhCccCCCCCCCCCCCCCCCCCCccccCCCCCCcEEEEeccccccceeeEEEee
Q 011989 392 SSTKGAIGHLLGAAGAVEAIFAVLAIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPISAALSNSFGFGGTNASLLFTK 471 (473)
Q Consensus 392 ~s~k~~~Gh~~~AsG~~~li~~~~~l~~~~ipp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~g~gG~~~~~vl~~ 471 (473)
+++|+++||+++|||++++++++++|+++++||++|++++++++....++ .+++..+++.+++|||||||+|+|+||+|
T Consensus 72 ~s~K~~~GH~~~asG~~~l~~~~~~l~~~~ipp~~~~~~~~~~~~~~~v~-~~~~~~~~~~a~~nsfGfGG~Na~~vl~~ 150 (151)
T d2vbaa2 72 SATKAMTGHSLGAAGVQEAIYSLLMLEHGFIAPSINIEELDEQAAGLNIV-TETTDRELTTVMSNSFGFGGTNATLVMRK 150 (151)
T ss_dssp ECTHHHHCBCGGGHHHHHHHHHHHHHHHTEECCCCCCSSBCTTCTTSEEC-CSCEECCCCEEEEEEEETTTEEEEEEEEC
T ss_pred ccchhhccccccchhhhhhhHHHHHHHcCCcccccCcccccccccccccc-CcCcCCCCCEEEEeCCcccceeEEEEEEE
Confidence 99999999999999999999999999999999999999999987655555 56667789999999999999999999998
Q ss_pred c
Q 011989 472 C 472 (473)
Q Consensus 472 ~ 472 (473)
.
T Consensus 151 v 151 (151)
T d2vbaa2 151 L 151 (151)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >d1teda_ c.95.1.2 (A:) Polyketide synthase PKS18 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Chalcone synthase-like domain: Polyketide synthase PKS18 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.70 E-value=4.2e-17 Score=160.60 Aligned_cols=259 Identities=15% Similarity=0.138 Sum_probs=157.4
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCCCCCCceeEEEecCCCChhhHHHHHHHHHHhccccCCCcchhhhhhhHHHHHHHHhc
Q 011989 128 RFIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKY 207 (473)
Q Consensus 128 ~~~~la~~aa~~Al~dAgl~~~~~~~~~~~gvivg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~l 207 (473)
....|+.+|+++||++||++++|++ .||++++.+ +..+..+.+|+..|
T Consensus 91 ~~~~la~~Aa~~aL~~ag~~~~dId-----~lI~~t~t~---------------------------~~~P~~a~~v~~~L 138 (372)
T d1teda_ 91 HAVPLAVDVSKRALAGLPYRAAEIG-----LLVLATSTG---------------------------FIAPGVDVAIVKEL 138 (372)
T ss_dssp HHHHHHHHHHHHHHTTCCCCGGGEE-----EEEEEESSC---------------------------CCSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHCC-----EEEEeccCC---------------------------CCCchHHHHHHhhh
Confidence 4568999999999999999887776 666666432 11245667899999
Q ss_pred CCCCCe--eeec-CCcchHHHHHHHHHHHHHcCCCCEEEEeecCCCcChHHHHHHhhhhccccccCCCCCCCCcCccCCC
Q 011989 208 GFQGPN--HAAV-TACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGR 284 (473)
Q Consensus 208 gl~Gp~--~~v~-~acasg~~Al~~A~~~I~~G~~d~vlv~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pfd~~~ 284 (473)
|++... +.+. .||++++.||..|..+|++|..+.+||+++|.++..... .+ . ++...
T Consensus 139 Gl~~~~~~~~~~~~gC~g~~~aL~~A~~~l~sg~~~~~LVV~~E~~s~~~~~----------------~d---~-~~~~~ 198 (372)
T d1teda_ 139 GLSPSISRVVVNFMGCAAAMNALGTATNYVRAHPAMKALVVCIELCSVNAVF----------------AD---D-INDVV 198 (372)
T ss_dssp TCCTTCEEEEEESCGGGHHHHHHHHHHHHHHHSTTCEEEEEEEEECGGGCCC----------------CS---S-HHHHH
T ss_pred ccCCceeEeeccccCccHHHHHHHHHHHHHhcCCCccceeeeehhhcccccC----------------CC---c-chhhh
Confidence 998643 3343 589999999999999999999999999999964321100 00 0 00111
Q ss_pred CceeeccceEEEEEccchHHHhcCCeEEEEEEEEEEe-cCC-CC-----CCC------CCC-----ChHHHHHHHHHHHH
Q 011989 285 DGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMS-GDA-HH-----ITQ------PHI-----DGKGAILAMTRALK 346 (473)
Q Consensus 285 ~G~~~geGaaavvL~~~~~A~~~g~~~~a~i~g~~~~-~d~-~~-----~~~------~~~-----~~~~~~~a~~~al~ 346 (473)
..+++||||+|+||++.+....... ....+.+.... ... .. ... ... .......+++++|+
T Consensus 199 ~~~lfGDGAaA~ll~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~ 277 (372)
T d1teda_ 199 IHSLFGDGCAALVIGASQVQEKLEP-GKVVVRSSFSQLLDNTEDGIVLGVNHNGITCELSENLPGYIFSGVAPVVTEMLW 277 (372)
T ss_dssp HHHHBCEEEEEEEEEEECTTSCCCT-TCEEEEEEEEEECTTCTTSEEEEEETTEEEEEECTTHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhcccceeEEeccCCcccccCC-ceeEEecccccccCCCccccccCCCCCcceeechHHHHHHHHHHHHHHHHHHHH
Confidence 2456899999999987553222111 11223332211 110 00 000 000 12345678999999
Q ss_pred HcCCCCCCccEEEEcCCCCCCCCHHHHHHHHHHhhcccCCCCceee-ccccchhhhHHhHHHHHHHHHHHHHHhCccCCC
Q 011989 347 QSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFS-STKGAIGHLLGAAGAVEAIFAVLAIHHGVAPLT 425 (473)
Q Consensus 347 ~agl~~~dId~v~~hgtgt~~~D~~E~~a~~~~~~~~~~~~~~~v~-s~k~~~Gh~~~AsG~~~li~~~~~l~~~~ipp~ 425 (473)
++|++++|||++.+|-.+... ...+.+.++... ..++.+ .+-..+||+.+|+=.+.| -..++++.+
T Consensus 278 ~~gl~~~did~~i~Hq~~~~i-----~~~i~~~Lgl~~--ek~~~s~~~l~~~GN~~sasip~~L---~~~l~~g~~--- 344 (372)
T d1teda_ 278 DNGLQISDIDLWAIHPGGPKI-----IEQSVRSLGISA--ELAAQSWDVLARFGNMLSVSLIFVL---ETMVQQAES--- 344 (372)
T ss_dssp HTTCCGGGCSCEEECCSCHHH-----HHHHHHHHTCCG--GGGHHHHHHHHHHCBCTHHHHHHHH---HHHHHSCSS---
T ss_pred hcCCCHHHhhhhhccCccHHH-----HHHHHHHcCCCH--HHhhhhHHHHhccCCcHHHHHHHHH---HHHHHhCCC---
Confidence 999999999999999654332 233444444321 122211 112356888776543322 233444331
Q ss_pred CCCCCCCCCCCCCCCccccCCCCCCcEEEEeccccccceeeEEEeecC
Q 011989 426 LNLAKPDPIFNDNFMPLTASKDMPISAALSNSFGFGGTNASLLFTKCQ 473 (473)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~g~gG~~~~~vl~~~~ 473 (473)
....+.++..+||-|=+..++||+..+
T Consensus 345 ---------------------~~g~d~vll~~fG~G~s~~~~ll~~~~ 371 (372)
T d1teda_ 345 ---------------------AKAISTGVAFAFGPGVTVEGMLFDIIR 371 (372)
T ss_dssp ---------------------SSSSEEEEEEEEETTTEEEEEEEEECC
T ss_pred ---------------------CCCCCEEEEEEEcHHHhHHHHhheeec
Confidence 122356677788877678888888653
|
| >d1hnja1 c.95.1.2 (A:1-174) Ketoacyl-ACP synthase III (FabH) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Chalcone synthase-like domain: Ketoacyl-ACP synthase III (FabH) species: Escherichia coli [TaxId: 562]
Probab=99.48 E-value=4e-15 Score=129.77 Aligned_cols=119 Identities=18% Similarity=0.214 Sum_probs=95.0
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCceeEEEecCCCChhhHHHHHHHHHHhccccCCCcchhhhhhhHHHHHHHHhcC
Q 011989 129 FIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYG 208 (473)
Q Consensus 129 ~~~la~~aa~~Al~dAgl~~~~~~~~~~~gvivg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lg 208 (473)
...|+.+|+++||+++|+++++++ .|++++..+. ...+..+..|...||
T Consensus 51 ~~~la~~Aa~~al~~a~~~~~~Id-----~li~~s~~~~--------------------------~~~P~~a~~v~~~Lg 99 (174)
T d1hnja1 51 VSTMGFEAATRAIEMAGIEKDQIG-----LIVVATTSAT--------------------------HAFPSAACQIQSMLG 99 (174)
T ss_dssp HHHHHHHHHHHHHHHHTCCGGGCC-----EEEEECSCCS--------------------------CSSSCHHHHHHHHHT
T ss_pred chHHHHHHHHHhhhhccccccccc-----EEEEecCCcc--------------------------ccccchhhhhhhccC
Confidence 568999999999999999988887 7888775432 233566778999999
Q ss_pred CCC-CeeeecCCcchHHHHHHHHHHHHHcCCCCEEEEeecCCCcChHHHHHHhhhhccccccCCCCCCCCcCccCCCCce
Q 011989 209 FQG-PNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDGF 287 (473)
Q Consensus 209 l~G-p~~~v~~acasg~~Al~~A~~~I~~G~~d~vlv~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pfd~~~~G~ 287 (473)
++. +++.+..+|++++.||..|..+|++|.++.+||+++|..+.. +. ++.....+
T Consensus 100 l~~~~~~di~~~C~g~~~al~~A~~~i~sg~~~~~Lvv~~e~~S~~-----------~~-------------~~d~~~~~ 155 (174)
T d1hnja1 100 IKGCPAFDVAAACAGFTYALSVADQYVKSGAVKYALVVGSDVLART-----------CD-------------PTDRGTII 155 (174)
T ss_dssp CCSSCEEEECCGGGHHHHHHHHHHHHHHTTSCSEEEEEEEECHHHH-----------SC-------------TTCHHHHT
T ss_pred CCchhhhhhhhhhccHHHHHHHHHHHHhcCCcceeEEEeeehhhcc-----------cC-------------CCCCCeEE
Confidence 986 889999999999999999999999999999999999973211 00 11112345
Q ss_pred eeccceEEEEEccch
Q 011989 288 VIGEGSGVLVLEELE 302 (473)
Q Consensus 288 ~~geGaaavvL~~~~ 302 (473)
++||||+|+||++.+
T Consensus 156 lfGDgA~A~vl~~~~ 170 (174)
T d1hnja1 156 IFGDGAGAAVLAASE 170 (174)
T ss_dssp TBCCEEEEEEEEEES
T ss_pred EeceeeEEEEEEeCC
Confidence 789999999999754
|
| >d1ub7a1 c.95.1.2 (A:2-173) Ketoacyl-ACP synthase III (FabH) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Chalcone synthase-like domain: Ketoacyl-ACP synthase III (FabH) species: Thermus thermophilus [TaxId: 274]
Probab=99.47 E-value=9e-15 Score=127.19 Aligned_cols=119 Identities=14% Similarity=0.236 Sum_probs=94.9
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCceeEEEecCCCChhhHHHHHHHHHHhccccCCCcchhhhhhhHHHHHHHHhcC
Q 011989 129 FIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYG 208 (473)
Q Consensus 129 ~~~la~~aa~~Al~dAgl~~~~~~~~~~~gvivg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lg 208 (473)
...|+.+|+++||+++|+++++++ .|++++..+ ....+..+..|+..||
T Consensus 49 ~~~ma~~Aa~~aL~~agi~~~dId-----lli~~s~t~--------------------------~~~~p~~a~~v~~~Lg 97 (172)
T d1ub7a1 49 TSDLAFKAVEDLLRRHPGALEGVD-----AVIVATNTP--------------------------DALFPDTAALVQARFG 97 (172)
T ss_dssp HHHHHHHHHHHHHHHSTTTTTTEE-----EEEEECSSC--------------------------SEEESCHHHHHHHHTT
T ss_pred ccHHHHHHHHHHHhhcCcccccce-----EEEEecccc--------------------------cccccchHHHHHHHhc
Confidence 578999999999999999888776 677766442 2234556678899999
Q ss_pred CCCCeeeecCCcchHHHHHHHHHHHHHcCCCCEEEEeecCCCcChHHHHHHhhhhccccccCCCCCCCCcCccCCCCcee
Q 011989 209 FQGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDGFV 288 (473)
Q Consensus 209 l~Gp~~~v~~acasg~~Al~~A~~~I~~G~~d~vlv~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pfd~~~~G~~ 288 (473)
.+.+++.|..+|++++.+|..|..++++|..+.+||+++|.++.-.. ++.....++
T Consensus 98 ~~~~~~di~~~C~g~~~al~~a~~~~~~~~~~~~Lvv~~e~~S~~~~------------------------~~d~~~~~l 153 (172)
T d1ub7a1 98 LKAFAYDLLAGCPGWIYALAQAHALVEAGLAQKVLAVGAEALSKIID------------------------WNDRATAVL 153 (172)
T ss_dssp CCCEEEEEECSTTHHHHHHHHHHHHHHTTSCSEEEEEEEECGGGTSC------------------------TTCHHHHTT
T ss_pred cCccceeehhccccHHHHHHHHhhhhhcCCcceeEEecccccccccC------------------------CCCcCeEEE
Confidence 88899999999999999999999999999999999999997432110 112223567
Q ss_pred eccceEEEEEccch
Q 011989 289 IGEGSGVLVLEELE 302 (473)
Q Consensus 289 ~geGaaavvL~~~~ 302 (473)
+||||+|+||++.+
T Consensus 154 fGDgAaA~ll~~~~ 167 (172)
T d1ub7a1 154 FGDGGGAAVVGKVR 167 (172)
T ss_dssp BCCEEEEEEEECCC
T ss_pred ecceeEEEEEEEcC
Confidence 89999999998755
|
| >d1afwa2 c.95.1.1 (A:294-417) Thiolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Thiolase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.44 E-value=6.8e-14 Score=112.11 Aligned_cols=119 Identities=24% Similarity=0.362 Sum_probs=95.9
Q ss_pred CCeEEEEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEEEEcCCCCCCCCHHHHHHHHHHhhcccCCC
Q 011989 308 GAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSG 387 (473)
Q Consensus 308 g~~~~a~i~g~~~~~d~~~~~~~~~~~~~~~~a~~~al~~agl~~~dId~v~~hgtgt~~~D~~E~~a~~~~~~~~~~~~ 387 (473)
|.+|+++|.+|+... ..|...+.+...+++++|+++|++.+|||+||+| |+||.+.+...+.++.
T Consensus 2 gl~plAri~~~a~~g-----~~P~~m~~gPv~Ai~klL~r~gl~~~Did~~Ein----------EAFA~q~l~~~~~l~i 66 (124)
T d1afwa2 2 NLPVLGRYIDFQTVG-----VPPEIMGVGPAYAIPKVLEATGLQVQDIDIFEIN----------EAFAAQALYCIHKLGI 66 (124)
T ss_dssp TCCCCEEEEEEEEEE-----CCGGGGGGHHHHHHHHHHHHHTCCGGGCSEEEEC----------CSBHHHHHHHHHHHTC
T ss_pred CCcEEEEEEEEEEEe-----cCHHHhhhChHHHHHHHHHHcCCCcccCcEEEec----------cchhHHHHHHHHHcCC
Confidence 678899999999876 3566677788999999999999999999999999 9999988877655433
Q ss_pred Cce-eecccc--chhhhHHhHHHHHHHHHHHHHHhCccCCCCCCCCCCCCCCCCCCccccCCCCCCcEEEEeccccccce
Q 011989 388 SLA-FSSTKG--AIGHLLGAAGAVEAIFAVLAIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPISAALSNSFGFGGTN 464 (473)
Q Consensus 388 ~~~-v~s~k~--~~Gh~~~AsG~~~li~~~~~l~~~~ipp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~g~gG~~ 464 (473)
+.. +|...+ .+|||.||||...++.++.+|++ .++.+++...-||.-
T Consensus 67 d~~kvN~~GGaiAlGHP~GaSGarlv~~l~~~L~~------------------------------~~~glas~C~ggG~G 116 (124)
T d1afwa2 67 DLNKVNPRGGAIALGHPLGCTGARQVATILRELKK------------------------------DQIGVVSMCIGTGMG 116 (124)
T ss_dssp CGGGBSTTCCHHHHCBCTTTHHHHHHHHHHHHSCT------------------------------TCEEEEEEEETTTEE
T ss_pred ChhhccccCccceecCCcCCchHHHHHHHHHHhcc------------------------------CCEEEEEEcccCCcE
Confidence 332 333334 88999999999999999988753 136777777788888
Q ss_pred eeEEEee
Q 011989 465 ASLLFTK 471 (473)
Q Consensus 465 ~~~vl~~ 471 (473)
.++|++|
T Consensus 117 ~a~~ier 123 (124)
T d1afwa2 117 AAAIFIK 123 (124)
T ss_dssp EEEEEEE
T ss_pred EEEEEEe
Confidence 8888886
|
| >d1ulqa2 c.95.1.1 (A:276-400) Beta-ketoadipyl CoA thiolase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Beta-ketoadipyl CoA thiolase species: Thermus thermophilus [TaxId: 274]
Probab=99.41 E-value=2.1e-13 Score=109.25 Aligned_cols=120 Identities=25% Similarity=0.320 Sum_probs=94.9
Q ss_pred eEEEEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEEEEcCCCCCCCCHHHHHHHHHHhhcccCCCCc
Q 011989 310 KIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSL 389 (473)
Q Consensus 310 ~~~a~i~g~~~~~d~~~~~~~~~~~~~~~~a~~~al~~agl~~~dId~v~~hgtgt~~~D~~E~~a~~~~~~~~~~~~~~ 389 (473)
+|+++|.+|+... ..|...+.+...+++++|+++|++++|||++|+| |+||.+.+...+.....+
T Consensus 1 KPlA~i~~~~~~g-----~~P~~~~~~P~~A~~~~L~r~gl~~~Did~~Ein----------EAFAaq~l~~~~~~~l~~ 65 (125)
T d1ulqa2 1 RPLARVRAIAVAG-----VPPRIMGIGPVPATRKALERAGLSFSDLGLIELN----------EAFAAQALAVLREWSLSM 65 (125)
T ss_dssp CCSEEEEEEEEEE-----CCGGGGGGTHHHHHHHHHHHTTCCGGGCSEEEEC----------CSBHHHHHHHHHHHTCCT
T ss_pred CCeEEEEEEEEEe-----cCHHHHhhccHHHHHhHhhccCcCccccchheec----------cccchhHHHHHHHhhccC
Confidence 3678999998876 3566666778999999999999999999999999 999987765543211111
Q ss_pred ---eeecccc--chhhhHHhHHHHHHHHHHHHHHhCccCCCCCCCCCCCCCCCCCCccccCCCCCCcEEEEeccccccce
Q 011989 390 ---AFSSTKG--AIGHLLGAAGAVEAIFAVLAIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPISAALSNSFGFGGTN 464 (473)
Q Consensus 390 ---~v~s~k~--~~Gh~~~AsG~~~li~~~~~l~~~~ipp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~g~gG~~ 464 (473)
.+|...+ .+|||.||||...++..+.+|+++ +.++.++....-||..
T Consensus 66 d~~kvN~~GGaIAlGHP~GASGari~~tl~~~L~~~----------------------------~~~~G~as~C~gGG~g 117 (125)
T d1ulqa2 66 EDQRLNPNGGAIALGHPLGASGARILTTLVHEMRRR----------------------------KVQFGLATMCIGVGQG 117 (125)
T ss_dssp TCTTBSTTCCHHHHCCCHHHHHHHHHHHHHHHHHHT----------------------------TCSEEEEEEEETTTEE
T ss_pred chhhcCCCCCcccccCCccccchhHHHHHHHHHHhc----------------------------CCCEEEEEecccccce
Confidence 2444444 889999999999999999999852 2468888888899999
Q ss_pred eeEEEeec
Q 011989 465 ASLLFTKC 472 (473)
Q Consensus 465 ~~~vl~~~ 472 (473)
.++++|+.
T Consensus 118 ~A~~iE~i 125 (125)
T d1ulqa2 118 IAVVVEGM 125 (125)
T ss_dssp EEEEEEEC
T ss_pred eEEEEEeC
Confidence 99999973
|
| >d1mzja1 c.95.1.2 (A:3-183) Priming beta-ketosynthase from the r1128 polyketide biosynthetic pathway {Streptomyces sp. r1128 [TaxId: 140437]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Chalcone synthase-like domain: Priming beta-ketosynthase from the r1128 polyketide biosynthetic pathway species: Streptomyces sp. r1128 [TaxId: 140437]
Probab=99.38 E-value=4e-13 Score=117.54 Aligned_cols=119 Identities=20% Similarity=0.234 Sum_probs=94.1
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCceeEEEecCCCChhhHHHHHHHHHHhccccCCCcchhhhhhhHHHHHHHHhcC
Q 011989 129 FIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYG 208 (473)
Q Consensus 129 ~~~la~~aa~~Al~dAgl~~~~~~~~~~~gvivg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lg 208 (473)
...|+.+|+++||+++|+++++++ .|++++..+. ...+..+..++..++
T Consensus 58 ~~~ma~~Aa~~aL~~a~~~~~dId-----~li~~s~~~~--------------------------~~~p~~a~~v~~~l~ 106 (181)
T d1mzja1 58 IQVMGVAASRRALEHAGVDPAEID-----LVVVSTMTNF--------------------------VHTPPLSVAIAHELG 106 (181)
T ss_dssp HHHHHHHHHHHHHHHHTCCGGGCC-----EEEEECSCCC--------------------------CCSSCHHHHHHHHHT
T ss_pred HHHHhHHHHHhhhhhccCChhHCe-----EEEEeccCCc--------------------------cccccHHHHHHHhhc
Confidence 578999999999999999988887 7777775422 222445667888899
Q ss_pred CCC-CeeeecCCcchHHHHHHHHHHHHHcCCCCEEEEeecCCCcChHHHHHHhhhhccccccCCCCCCCCcCccCCCCce
Q 011989 209 FQG-PNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDGF 287 (473)
Q Consensus 209 l~G-p~~~v~~acasg~~Al~~A~~~I~~G~~d~vlv~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pfd~~~~G~ 287 (473)
.+. .++.+..+|++++.||..|..+|++|..+.+||+++|.++... .++.....+
T Consensus 107 ~~~~~~~Dv~~~C~g~~~aL~~A~~~i~~~~~~~~LvV~~e~~s~~~------------------------~~~d~~~~~ 162 (181)
T d1mzja1 107 ADNAGGFDLSAACAGFCHALSIAADAVESGGSRHVLVVATERMTDVI------------------------DLADRSLSF 162 (181)
T ss_dssp CTTCEEEEEECGGGHHHHHHHHHHHHHHHSSCSCEEEEEEEEGGGGS------------------------CSSCTTTTT
T ss_pred CCCccceeHHhhhccHHHHHHHHhCHhhcCCCceeEEeeeccccccC------------------------CCCCcceEE
Confidence 864 7899999999999999999999999999999999999732110 022234467
Q ss_pred eeccceEEEEEccch
Q 011989 288 VIGEGSGVLVLEELE 302 (473)
Q Consensus 288 ~~geGaaavvL~~~~ 302 (473)
++||||+|+||++.+
T Consensus 163 lfGDGAaA~ll~~~~ 177 (181)
T d1mzja1 163 LFGDGAGAAVVGPSD 177 (181)
T ss_dssp TBCEEEEEEEEEEES
T ss_pred EeeeeeEEEEEEeCC
Confidence 899999999998654
|
| >d1m3ka2 c.95.1.1 (A:269-392) Biosynthetic thiolase {Zoogloea ramigera [TaxId: 350]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Biosynthetic thiolase species: Zoogloea ramigera [TaxId: 350]
Probab=99.37 E-value=2.5e-13 Score=108.59 Aligned_cols=119 Identities=23% Similarity=0.326 Sum_probs=96.7
Q ss_pred eEEEEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEEEEcCCCCCCCCHHHHHHHHHHhhcccCCCCc
Q 011989 310 KIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSL 389 (473)
Q Consensus 310 ~~~a~i~g~~~~~d~~~~~~~~~~~~~~~~a~~~al~~agl~~~dId~v~~hgtgt~~~D~~E~~a~~~~~~~~~~~~~~ 389 (473)
+|+++|.+++... ..|...+.+...+++++|+++|++.+|||+||+| |+||.+.+...+.++.+.
T Consensus 2 ~Plari~~~a~~g-----~dP~~mg~~Pv~A~~~lL~r~gl~~~Did~~Ein----------EAFA~q~la~~~~l~id~ 66 (124)
T d1m3ka2 2 QPLGRIVSWATVG-----VDPKVMGTGPIPASRKALERAGWKIGDLDLVEAN----------EAFAAQACAVNKDLGWDP 66 (124)
T ss_dssp CCSEEEEEEEEEE-----CCGGGGGGTHHHHHHHHHHHHTCCGGGCSEEEEC----------CSBHHHHHHHHHHHCCCG
T ss_pred CcEEEEEEEEEEe-----cChHHhccchHHHHHHHHHHcCCChhcccHHHhc----------ccchhheeeehHhhCCCh
Confidence 5779999998876 3566667788999999999999999999999999 999988887655433222
Q ss_pred e-eecccc--chhhhHHhHHHHHHHHHHHHHHhCccCCCCCCCCCCCCCCCCCCccccCCCCCCcEEEEeccccccceee
Q 011989 390 A-FSSTKG--AIGHLLGAAGAVEAIFAVLAIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPISAALSNSFGFGGTNAS 466 (473)
Q Consensus 390 ~-v~s~k~--~~Gh~~~AsG~~~li~~~~~l~~~~ipp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~g~gG~~~~ 466 (473)
. +|...+ .+|||.||||...++..+..|+++ +.++.+++...-||.-.+
T Consensus 67 ~kvN~~GGaiAlGHP~GaSGarl~~tl~~~L~~~----------------------------~~~~Glas~C~gGG~g~A 118 (124)
T d1m3ka2 67 SIVNVNGGAIAIGHPIGASGARILNTLLFEMKRR----------------------------GARKGLATLCIGGGMGVA 118 (124)
T ss_dssp GGBSTTCCHHHHCCCTTTHHHHHHHHHHHHHHHH----------------------------TCSEEEEEEEETTTEEEE
T ss_pred hhcCCCCCccccccCcCccchhHHHHHHHHHHhc----------------------------CCCEEEEEecccccceeE
Confidence 2 333334 889999999999999999999861 246888888888999999
Q ss_pred EEEee
Q 011989 467 LLFTK 471 (473)
Q Consensus 467 ~vl~~ 471 (473)
+++|+
T Consensus 119 ~liE~ 123 (124)
T d1m3ka2 119 MCIES 123 (124)
T ss_dssp EEEEC
T ss_pred EEEEe
Confidence 99987
|
| >d1wdkc2 c.95.1.1 (C:264-391) Fatty oxidation complex beta subunit (3-ketoacyl-CoA thiolase) {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Fatty oxidation complex beta subunit (3-ketoacyl-CoA thiolase) species: Pseudomonas fragi [TaxId: 296]
Probab=99.36 E-value=6.5e-13 Score=106.92 Aligned_cols=122 Identities=24% Similarity=0.311 Sum_probs=96.9
Q ss_pred CCeEEEEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEEEEcCCCCCCCCHHHHHHHHHHhhcccCCC
Q 011989 308 GAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSG 387 (473)
Q Consensus 308 g~~~~a~i~g~~~~~d~~~~~~~~~~~~~~~~a~~~al~~agl~~~dId~v~~hgtgt~~~D~~E~~a~~~~~~~~~~~~ 387 (473)
|.+|+++|.+++... ..|...+.+...+++++|+++|++.+|||++|+| |+||.+.+...+....
T Consensus 1 Gl~pla~i~~~~~~g-----~dP~~mg~~p~~A~~klL~ragl~~~did~~Ein----------EAFA~q~l~~~~~~~~ 65 (128)
T d1wdkc2 1 GLEPLAVIRSMAVAG-----VDPAIMGYGPVPATQKALKRAGLNMADIDFIELN----------EAFAAQALPVLKDLKV 65 (128)
T ss_dssp TCCCSEEEEEEEEEE-----CCGGGGGGTHHHHHHHHHHHHTCCGGGCCEEEEC----------CSBHHHHHHHHHHTTC
T ss_pred CCCEEEEEEEEEEEe-----cCHHHhccCcHHHHHHHhhhcCccccccceEEee----------cccchhhhhhhhhccc
Confidence 467889999998876 3566666778999999999999999999999999 9998887755333211
Q ss_pred -Cc---eeecccc--chhhhHHhHHHHHHHHHHHHHHhCccCCCCCCCCCCCCCCCCCCccccCCCCCCcEEEEeccccc
Q 011989 388 -SL---AFSSTKG--AIGHLLGAAGAVEAIFAVLAIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPISAALSNSFGFG 461 (473)
Q Consensus 388 -~~---~v~s~k~--~~Gh~~~AsG~~~li~~~~~l~~~~ipp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~g~g 461 (473)
.. .+|...+ .+|||.||||...++..+.+|+++ +.++.++....-|
T Consensus 66 ~~~~~ekvN~~GGaiAlGHP~GASGaRlv~~l~~~L~~~----------------------------~~~~Glas~C~gG 117 (128)
T d1wdkc2 66 LDKMNEKVNLHGGAIALGHPFGCSGARISGTLLNVMKQN----------------------------GGTFGLSTMCIGL 117 (128)
T ss_dssp GGGHHHHBSTTCCHHHHCCCHHHHHHHHHHHHHHHHHHT----------------------------TCSEEEEEEEETT
T ss_pred ccCCcceecCCCCcccccccccccchhHHHHHHHHHHhc----------------------------CCCEEEEEecccc
Confidence 11 2444444 889999999999999999999862 2467888888889
Q ss_pred cceeeEEEeec
Q 011989 462 GTNASLLFTKC 472 (473)
Q Consensus 462 G~~~~~vl~~~ 472 (473)
|.-+++++|+.
T Consensus 118 G~g~A~~iErv 128 (128)
T d1wdkc2 118 GQGIATVFERV 128 (128)
T ss_dssp TEEEEEEEECC
T ss_pred cceeEEEEEeC
Confidence 99999999873
|
| >d1ulqa1 c.95.1.1 (A:3-275) Beta-ketoadipyl CoA thiolase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Beta-ketoadipyl CoA thiolase species: Thermus thermophilus [TaxId: 274]
Probab=99.23 E-value=2.2e-11 Score=113.37 Aligned_cols=94 Identities=17% Similarity=0.117 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCceeEEEecCCCChhhHHHHHHHHHHhccccCCCcchhhhhhhHHHHHHHHhcC
Q 011989 129 FIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYG 208 (473)
Q Consensus 129 ~~~la~~aa~~Al~dAgl~~~~~~~~~~~gvivg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lg 208 (473)
..+|+..+++++|+++|+++++++ .|++|+..... .-...++..++...|
T Consensus 24 ~~dL~~~a~~~al~~~~i~~~~Id-----~vi~G~v~~~g-------------------------~~~~n~aR~~al~aG 73 (273)
T d1ulqa1 24 PDDLLAHALSVLVDRSGVPKEEVE-----DVYAGCANQAG-------------------------EDNRNVARMALLLAG 73 (273)
T ss_dssp HHHHHHHHHHHHHHHHTCCGGGCC-----EEEEECSCCSS-------------------------TTTTTHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCC-----EEEEEeccccc-------------------------cccccHHHHHHHHcC
Confidence 357889999999999999999998 89999854321 011234556666667
Q ss_pred CCC--CeeeecCCcchHHHHHHHHHHHHHcCCCCEEEEeecCCCcC
Q 011989 209 FQG--PNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSID 252 (473)
Q Consensus 209 l~G--p~~~v~~acasg~~Al~~A~~~I~~G~~d~vlv~g~d~~~~ 252 (473)
+.. |+++|+..|+||+.||.+|++.|++|..|++|++|+|+++.
T Consensus 74 lp~~vp~~tVn~~CaSg~~Ai~~a~~~I~~G~~d~~lagG~EsmS~ 119 (273)
T d1ulqa1 74 FPVEVAGCTVNRLCGSGLEAVAQAARAIWAGEGKVYIGSGVESMSR 119 (273)
T ss_dssp CCTTCEEEEEECGGGHHHHHHHHHHHHHHTTSCSEEEEEEEEESSS
T ss_pred CCCccceEEEecccchHHHHHHHHHHHHhcCCCccceeeeccccch
Confidence 743 88999999999999999999999999999999999998663
|
| >d1m3ka1 c.95.1.1 (A:1-268) Biosynthetic thiolase {Zoogloea ramigera [TaxId: 350]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Biosynthetic thiolase species: Zoogloea ramigera [TaxId: 350]
Probab=99.23 E-value=2e-11 Score=113.13 Aligned_cols=93 Identities=18% Similarity=0.185 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCceeEEEecCCCChhhHHHHHHHHHHhccccCCCcchhhhhhhHHHHHHHHhcC
Q 011989 129 FIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYG 208 (473)
Q Consensus 129 ~~~la~~aa~~Al~dAgl~~~~~~~~~~~gvivg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lg 208 (473)
...|+..+++++|+++|+++++++ .|++|+..... -...++..++...|
T Consensus 27 ~~dL~~~~~~~~l~~~~i~~~~Id-----~vi~G~~~~~~--------------------------~~~n~ar~~al~ag 75 (268)
T d1m3ka1 27 AHELGATVISAVLERAGVAAGEVN-----EVILGQVLPAG--------------------------EGQNPARQAAMKAG 75 (268)
T ss_dssp HHHHHHHHHHHHHHHHTCCGGGCC-----EEEEECSCCTT--------------------------SCSCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCc-----EEEEeeccccC--------------------------cchHHHhHHHHHhC
Confidence 357899999999999999999998 89999854210 11234556677777
Q ss_pred CC--CCeeeecCCcchHHHHHHHHHHHHHcCCCCEEEEeecCCCcC
Q 011989 209 FQ--GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSID 252 (473)
Q Consensus 209 l~--Gp~~~v~~acasg~~Al~~A~~~I~~G~~d~vlv~g~d~~~~ 252 (473)
+. -|+++|+..|+||+.||.+|++.|++|++|++|++|+|+++.
T Consensus 76 lp~~vpa~tv~~~C~Sg~~Ai~~Aa~~I~~G~~dvvlagG~EsmS~ 121 (268)
T d1m3ka1 76 VPQEATAWGMNQLAGSGLRAVALGMQQIATGDASIIVAGGMESMSM 121 (268)
T ss_dssp CCTTSEEEEEECGGGHHHHHHHHHHHHHHTTSCSCEEEEEEEESTT
T ss_pred CcccccceeecccCcccchHHHHHHHHHhCCCceEEeecccccccc
Confidence 75 388999999999999999999999999999999999998763
|
| >d1u0ma1 c.95.1.2 (A:2-201) Putative polyketide synthase SCO1206 {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Chalcone synthase-like domain: Putative polyketide synthase SCO1206 species: Streptomyces coelicolor [TaxId: 1902]
Probab=99.21 E-value=7.2e-12 Score=111.25 Aligned_cols=117 Identities=18% Similarity=0.181 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCceeEEEecCCCChhhHHHHHHHHHHhccccCCCcchhhhhhhHHHHHHHHhcC
Q 011989 129 FIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYG 208 (473)
Q Consensus 129 ~~~la~~aa~~Al~dAgl~~~~~~~~~~~gvivg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lg 208 (473)
...|+.+|+++||+++|+++++++ .|+++++.+. . .+..+..+...+|
T Consensus 75 a~~la~~Aa~~aL~~ag~~~~dId-----~lI~~s~t~~----------------------~-----~P~~aa~v~~~lg 122 (200)
T d1u0ma1 75 AKSRVPAVIQRALDDAELLATDID-----VIIYVSCTGF----------------------M-----MPSLTAWLINEMG 122 (200)
T ss_dssp HHHHHHHHHHHHHHHHTCCGGGCS-----EEEEECSSSC----------------------C-----SSCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHcCCChhhhh-----eEEEeccCCC----------------------C-----cchhHHHHHHHHh
Confidence 467999999999999999988887 7777765421 1 2345668899999
Q ss_pred CCCC--eeee-cCCcchHHHHHHHHHHHHHcCCCCEEEEeecCCCcChHHHHHHhhhhccccccCCCCCCCCcCccCCC-
Q 011989 209 FQGP--NHAA-VTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGR- 284 (473)
Q Consensus 209 l~Gp--~~~v-~~acasg~~Al~~A~~~I~~G~~d~vlv~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pfd~~~- 284 (473)
++.. .+.+ ..+|++++.+|..|..+|++|..+.|||+++|.++... +|-|...
T Consensus 123 ~~~~~~~~~i~~~gC~g~~~al~~A~~~l~~~~~~~vLvv~~e~~S~~~-----------------------~~~d~~~~ 179 (200)
T d1u0ma1 123 FDSTTRQIPIAQLGCAAGGAAINRAHDFCTAYPEANALIVACEFCSLCY-----------------------QPTDLGVG 179 (200)
T ss_dssp CCTTCEEEEECSCGGGHHHHHHHHHHHHHHHSTTCEEEEEEEEEGGGGC-----------------------CTTCCSHH
T ss_pred cCCCeeEeccccchhhHHHHHHHHHHHHHHhCCCCEEEEEEEecccccc-----------------------CCCCCChh
Confidence 8763 4555 47999999999999999999999999999999743211 0111111
Q ss_pred ---CceeeccceEEEEEcc
Q 011989 285 ---DGFVIGEGSGVLVLEE 300 (473)
Q Consensus 285 ---~G~~~geGaaavvL~~ 300 (473)
...++||||+|+||+.
T Consensus 180 ~~~~~~lFgDGAaA~ll~~ 198 (200)
T d1u0ma1 180 SLLCNGLFGDGIAAAVVRG 198 (200)
T ss_dssp HHHHHHHBCEEEEEEEEET
T ss_pred hhhcccccccccEEEEEec
Confidence 1346899999999975
|
| >d1wdkc1 c.95.1.1 (C:2-263) Fatty oxidation complex beta subunit (3-ketoacyl-CoA thiolase) {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Fatty oxidation complex beta subunit (3-ketoacyl-CoA thiolase) species: Pseudomonas fragi [TaxId: 296]
Probab=99.14 E-value=3.1e-11 Score=111.29 Aligned_cols=93 Identities=18% Similarity=0.174 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHHH-HcCCCCCCCCCCCceeEEEecCCCChhhHHHHHHHHHHhccccCCCcchhhhhhhHHHHHHHHhcC
Q 011989 130 IAYALCAADEALH-DAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYG 208 (473)
Q Consensus 130 ~~la~~aa~~Al~-dAgl~~~~~~~~~~~gvivg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lg 208 (473)
.+|+..+++++|+ ++|+++++++ .|++|+..... .....++..++...|
T Consensus 31 ~dL~~~~i~~~l~r~agi~~~~Id-----~vi~G~v~~~~-------------------------~~g~n~aR~~al~ag 80 (262)
T d1wdkc1 31 EDMSAHLISKVLERNSKVDPGEVE-----DVIWGCVNQTL-------------------------EQGWNIARMASLMTQ 80 (262)
T ss_dssp HHHHHHHHHHHHHHCTTSCGGGEE-----EEEEECSSBSB-------------------------TTTTTHHHHHHTTSS
T ss_pred HHHHHHHHHHHHHhcCCCCHHHee-----EEEEEeecccc-------------------------cccccchhhhHhhhh
Confidence 5788999999999 5999988887 89999754210 011234556666666
Q ss_pred CCC--CeeeecCCcchHHHHHHHHHHHHHcCCCCEEEEeecCCCcC
Q 011989 209 FQG--PNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSID 252 (473)
Q Consensus 209 l~G--p~~~v~~acasg~~Al~~A~~~I~~G~~d~vlv~g~d~~~~ 252 (473)
+.. |+++|+..|+||+.||..|++.|++|+.|++|++|+|.++.
T Consensus 81 ~p~~vp~~tV~~~C~Sgl~Ai~~aa~~I~sG~~dvvlAgGvEsmS~ 126 (262)
T d1wdkc1 81 IPHTSAAQTVSRLCGSSMSALHTAAQAIMTGNGDVFVVGGVEHMGH 126 (262)
T ss_dssp SCTTSEEEEEECGGGHHHHHHHHHHHHHHTTSCSEEEEEEEEETTT
T ss_pred cccccchhhccccccHHHHHHHHHHHHHHhhcCCceeeeccccccc
Confidence 642 89999999999999999999999999999999999998664
|
| >d1bi5a1 c.95.1.2 (A:1-235) Chalcone synthase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Chalcone synthase-like domain: Chalcone synthase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.12 E-value=1e-10 Score=106.21 Aligned_cols=119 Identities=11% Similarity=0.053 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCCCCCCceeEEEecCCCChhhHHHHHHHHHHhccccCCCcchhhhhhhHHHHHHHHhc
Q 011989 128 RFIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKY 207 (473)
Q Consensus 128 ~~~~la~~aa~~Al~dAgl~~~~~~~~~~~gvivg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~l 207 (473)
....|+.+|+++||++||+++++++ .||++++++.. .++. ...+...+
T Consensus 101 ~~~~la~~Aa~~aL~~a~~~~~dId-----~lI~~t~t~~~--------------------------~p~~-~a~~~~~l 148 (235)
T d1bi5a1 101 EVPRLGKEAAVKAIKEWGQPKSKIT-----HLIVCTTSGVD--------------------------MPGA-DYQLTKLL 148 (235)
T ss_dssp HHHHHHHHHHHHHHHHHCSCGGGCC-----EEEEEESSCCC--------------------------SSCH-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCChhHCc-----EEEEecccCCc--------------------------cCcc-HHHHHHHH
Confidence 3557999999999999999988887 78888765321 1122 33566667
Q ss_pred CCCCCe--e-eecCCcchHHHHHHHHHHHHHcCCCCEEEEeecCCCcChHHHHHHhhhhccccccCCCCCCCCcCccCCC
Q 011989 208 GFQGPN--H-AAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGR 284 (473)
Q Consensus 208 gl~Gp~--~-~v~~acasg~~Al~~A~~~I~~G~~d~vlv~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pfd~~~ 284 (473)
++.... + .+..+|++++.+|..|..+|++|..+.|||+++|.++..+. ++.+.
T Consensus 149 ~~~~~~~~~~~~~~~C~g~~~al~~A~~~i~~~~~~~vLvV~~E~~S~~~~------------------------~~d~~ 204 (235)
T d1bi5a1 149 GLRPYVKRYMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEVTAVTFR------------------------GPSDT 204 (235)
T ss_dssp TCCTTCEEEEEESCCTTHHHHHHHHHHHHHHTSTTCEEEEEEEECGGGTCC------------------------CCCTT
T ss_pred hcCCCceEEeeecCccchHHHHHHHHHHHHHcCCCCeEEEEEeeecceecC------------------------CCCCC
Confidence 765432 3 35779999999999999999999999999999997432110 00111
Q ss_pred ------CceeeccceEEEEEccch
Q 011989 285 ------DGFVIGEGSGVLVLEELE 302 (473)
Q Consensus 285 ------~G~~~geGaaavvL~~~~ 302 (473)
...++||||+|+||+..+
T Consensus 205 ~~~~~v~~~lFGDGA~A~vl~~~p 228 (235)
T d1bi5a1 205 HLDSLVGQALFGDGAAALIVGSDP 228 (235)
T ss_dssp CHHHHHHHHHBCCEEEEEEEESSC
T ss_pred chhhhcceeeeccceEEEEEecCC
Confidence 134689999999998654
|
| >d1afwa1 c.95.1.1 (A:25-293) Thiolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Thiolase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.10 E-value=2.5e-10 Score=105.41 Aligned_cols=91 Identities=19% Similarity=0.147 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHHHH----cCCCCCCCCCCCceeEEEecCCCChhhHHHHHHHHHHhccccCCCcchhhhhhhHHHHHHHH
Q 011989 130 IAYALCAADEALHD----AKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSM 205 (473)
Q Consensus 130 ~~la~~aa~~Al~d----Agl~~~~~~~~~~~gvivg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~ 205 (473)
..|+..+++++|+. +|+++++++ .|++|+.... + ....++..++.
T Consensus 36 ~~L~~~~i~~~l~r~~~~~~idp~~Id-----~vi~G~v~~~-------------------------g-~~~~~aR~~al 84 (269)
T d1afwa1 36 DYLLYNFLNEFIGRFPEPLRADLNLIE-----EVACGNVLNV-------------------------G-AGATEHRAACL 84 (269)
T ss_dssp HHHHHHHHHHHHHTSCHHHHTCGGGCC-----CEEEECSSSB-------------------------G-GGHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCccccCChhhcC-----EEEecccccc-------------------------c-cccccchhhhh
Confidence 56777888888874 578888887 8999985421 1 12234556666
Q ss_pred hcCCC--CCeeeecCCcchHHHHHHHHHHHHHcCCCCEEEEeecCCCc
Q 011989 206 KYGFQ--GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSI 251 (473)
Q Consensus 206 ~lgl~--Gp~~~v~~acasg~~Al~~A~~~I~~G~~d~vlv~g~d~~~ 251 (473)
.-|+. -|.++|+..|+||++||..|++.|++|+.|++|++|+|.++
T Consensus 85 ~aglp~~vpa~tVnr~CaSg~~Ai~~Aa~~I~~G~~divlagG~EsmS 132 (269)
T d1afwa1 85 ASGIPYSTPFVALNRQCSSGLTAVNDIANKIKVGQIDIGLALGVESMT 132 (269)
T ss_dssp HTTCCTTSCEEEEECGGGHHHHHHHHHHHHHHTTSCSEEEEEEEEEHH
T ss_pred hccccccccchhccccchHHHHHHHHHHHHHhhccccceeeeeccccc
Confidence 67763 49999999999999999999999999999999999999865
|
| >d1xpma1 c.95.1.2 (A:2-167) 3-hydroxy-3-methylglutaryl CoA synthase MvaS {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Chalcone synthase-like domain: 3-hydroxy-3-methylglutaryl CoA synthase MvaS species: Staphylococcus aureus [TaxId: 1280]
Probab=99.02 E-value=4.1e-11 Score=103.10 Aligned_cols=113 Identities=14% Similarity=0.144 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCceeEEEecCCCChhhHHHHHHHHHHhccccCCCcchhhhhhhHHHHHHHHhcC
Q 011989 129 FIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYG 208 (473)
Q Consensus 129 ~~~la~~aa~~Al~dAgl~~~~~~~~~~~gvivg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lg 208 (473)
...|++.|+++||++.+ +++++ .+++++..+ ....+..+..+...+|
T Consensus 50 ~~~ma~~Aa~~al~~~~--~~~id-----~li~~t~~~--------------------------~~~~p~~a~~v~~~lg 96 (166)
T d1xpma1 50 IVSMGANAAKDIITDED--KKKIG-----MVIVATESA--------------------------VDAAKAAAVQIHNLLG 96 (166)
T ss_dssp HHHHHHHHHHTTCCHHH--HHHEE-----EEEEECSSC--------------------------SBSSSCHHHHHHHHTT
T ss_pred HHHHHHHHHHhhhcccc--CCCCC-----eEEEecccc--------------------------ccccchhHHHHHHhhc
Confidence 45799999999987664 33333 345555432 2223456678899999
Q ss_pred CCC--CeeeecCCcchHHHHHHHHHHHHHcCCCCEEEEeecCCCcChHHHHHHhhhhccccccCCCCCCCCcCccCCCCc
Q 011989 209 FQG--PNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDG 286 (473)
Q Consensus 209 l~G--p~~~v~~acasg~~Al~~A~~~I~~G~~d~vlv~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pfd~~~~G 286 (473)
++. .++.+..+|++++.||..|..+|++|..+.+||+++|..... ++ ...-
T Consensus 97 ~~~~~~~~dv~~~C~g~~~al~~A~~~i~~~~~~~alvV~sd~~~~~--------------------------~~-~~~~ 149 (166)
T d1xpma1 97 IQPFARCFEMKEACYAATPAIQLAKDYLATRPNEKVLVIATDTARYG--------------------------LN-SGGE 149 (166)
T ss_dssp CCSSCEEEEEESTTTTHHHHHHHHHHHHTTCTTCEEEEEEEEEECCC--------------------------TT-CSSG
T ss_pred cccceEEeeecccHHHHHHHHHHHhhHHhcCCCCeEEEEEEceEecc--------------------------CC-CCCC
Confidence 865 678899999999999999999999999999999999852211 11 1223
Q ss_pred eeeccceEEEEEccc
Q 011989 287 FVIGEGSGVLVLEEL 301 (473)
Q Consensus 287 ~~~geGaaavvL~~~ 301 (473)
+.+||||+|+||++.
T Consensus 150 ~~fGDGA~A~ll~~~ 164 (166)
T d1xpma1 150 PTQGAGAVAMVIAHN 164 (166)
T ss_dssp GGCEEEEEEEEEEES
T ss_pred ccCCCeeEEEEEecC
Confidence 568999999999864
|
| >d1u6ea2 c.95.1.2 (A:175-317) Ketoacyl-ACP synthase III (FabH) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Chalcone synthase-like domain: Ketoacyl-ACP synthase III (FabH) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.84 E-value=0.0054 Score=49.85 Aligned_cols=99 Identities=16% Similarity=0.165 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHcCCCCCCccEEEEcCCCCCCCCHHHHHHHHHHhhcccCCCCceeeccccchhhhHHhHHHHHHHHHHH
Q 011989 336 GAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAVL 415 (473)
Q Consensus 336 ~~~~a~~~al~~agl~~~dId~v~~hgtgt~~~D~~E~~a~~~~~~~~~~~~~~~v~s~k~~~Gh~~~AsG~~~li~~~~ 415 (473)
...++++++|+++|++++|||++.+|-.+. . -..++.+-++... .+. +.+.-..+||+.+|+=.+.|..
T Consensus 49 ~v~~~i~~~L~~~gl~~~dId~~i~Hqa~~----~-i~~~v~~~lgl~~--ek~-~~~~~~~~GNt~sasip~~L~~--- 117 (148)
T d1u6ea2 49 KMGDVGRRAMDAAGVRPDQIDVFVPHQANS----R-INELLVKNLQLRP--DAV-VANDIEHTGNTSAASIPLAMAE--- 117 (148)
T ss_dssp HHHHHHHHHHHHHTCCGGGCCEEEECCSCH----H-HHHHHHHHHTCCT--TCE-ECCTHHHHCBCGGGHHHHHHHH---
T ss_pred HHHHHHHHHHHHcCCCcccccEEEeccccH----H-HHHHHHHhcCCCc--hhh-hhhhHHhhCCCccchHHHHHHH---
Confidence 345789999999999999999999994332 2 2445555555431 122 2234467899998886665554
Q ss_pred HHHhCccCCCCCCCCCCCCCCCCCCccccCCCCCCcEEEEeccccccceeeEEEe
Q 011989 416 AIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPISAALSNSFGFGGTNASLLFT 470 (473)
Q Consensus 416 ~l~~~~ipp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~g~gG~~~~~vl~ 470 (473)
+++.+.+. +-..++..+||.|=+-+++|++
T Consensus 118 a~~~g~i~-------------------------~Gd~vll~gfG~G~s~~a~llr 147 (148)
T d1u6ea2 118 LLTTGAAK-------------------------PGDLALLIGYGAGLSYAAQVVR 147 (148)
T ss_dssp HHHHTSSC-------------------------TTCEEEEEEEETTTEEEEEEEE
T ss_pred HHHcCCCC-------------------------CCCEEEEEEEchhhhheEEEEe
Confidence 44444321 2345666688877777777775
|
| >d1ub7a2 c.95.1.2 (A:174-322) Ketoacyl-ACP synthase III (FabH) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Chalcone synthase-like domain: Ketoacyl-ACP synthase III (FabH) species: Thermus thermophilus [TaxId: 274]
Probab=96.35 E-value=0.0074 Score=49.08 Aligned_cols=97 Identities=21% Similarity=0.151 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHcCCCCCCccEEEEcCCCCCCCCHHHHHHHHHHhhcccCCCCceeeccccchhhhHHhHHHHHHHHHHHH
Q 011989 337 AILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLA 416 (473)
Q Consensus 337 ~~~a~~~al~~agl~~~dId~v~~hgtgt~~~D~~E~~a~~~~~~~~~~~~~~~v~s~k~~~Gh~~~AsG~~~li~~~~~ 416 (473)
...+++++|+++|++++|||++.+|- .+..+ ...+.+.++... .+.+ . .-..+||+.+|+=.+.|. +.
T Consensus 49 vp~~i~~~L~~~g~~~~dId~~i~Hq----a~~~~-~~~i~~~lgi~~--~k~~-~-~~~~~Gn~~sasip~~L~---~~ 116 (149)
T d1ub7a2 49 MNTATLEAIEKAGLTPEDIRLFVPHQ----ANLRI-IDAARERLGLPW--ERVA-V-NVDRYGNTSTASIPLALK---EA 116 (149)
T ss_dssp HHHHHHHHHHHHTCCGGGCSEEEECC----SCHHH-HHHHHHTTTCCG--GGBC-C-CHHHHCBCGGGHHHHHHH---HH
T ss_pred HHHHHHHHHHhhccccccccEEEeec----cchHH-HHHHHhhccchh--hHHH-H-HHHHhcCCcchhHHHHHH---HH
Confidence 44788999999999999999999993 33322 223333333221 1222 2 234679998887554433 44
Q ss_pred HHhCccCCCCCCCCCCCCCCCCCCccccCCCCCCcEEEEeccccccceeeEEEe
Q 011989 417 IHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPISAALSNSFGFGGTNASLLFT 470 (473)
Q Consensus 417 l~~~~ipp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~g~gG~~~~~vl~ 470 (473)
++.+.+. +-..++..+||.|-+..++||+
T Consensus 117 ~~~~~~~-------------------------~Gd~vll~g~G~G~s~ga~llr 145 (149)
T d1ub7a2 117 VDAGRIR-------------------------EGDHVLLVSFGAGLTWAAAVLT 145 (149)
T ss_dssp HHHTSSC-------------------------TTCEEEEEEEETTTEEEEEEEE
T ss_pred HHcCCCC-------------------------CCCEEEEEEEchHhhhEEEEEE
Confidence 4544432 2345666789988777777775
|
| >d1hnja2 c.95.1.2 (A:175-317) Ketoacyl-ACP synthase III (FabH) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Chalcone synthase-like domain: Ketoacyl-ACP synthase III (FabH) species: Escherichia coli [TaxId: 562]
Probab=95.91 E-value=0.018 Score=46.30 Aligned_cols=97 Identities=20% Similarity=0.162 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHcCCCCCCccEEEEcCCCCCCCCHHHHHHHHHHhhcccCCCCceeeccccchhhhHHhHHHHHHHHHHHH
Q 011989 337 AILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLA 416 (473)
Q Consensus 337 ~~~a~~~al~~agl~~~dId~v~~hgtgt~~~D~~E~~a~~~~~~~~~~~~~~~v~s~k~~~Gh~~~AsG~~~li~~~~~ 416 (473)
..++++++|+++|++++|||++..|-.+.. =...+.+.++... .+++ ..-..+||+.+|+=.+.|-. .
T Consensus 46 ~~~~i~~~L~~~g~~~~dId~~i~Hq~~~~-----~~~~~~~~l~l~~--~k~~--~~~~~~GN~~sasip~~L~~---~ 113 (143)
T d1hnja2 46 LAHIVDETLAANNLDRSQLDWLVPHQANLR-----IISATAKKLGMSM--DNVV--VTLDRHGNTSAASVPCALDE---A 113 (143)
T ss_dssp HHHHHHHHHHHTTCCGGGCCEEEECCSCHH-----HHHHHHHHTTCCG--GGBC--CCHHHHCBCGGGHHHHHHHH---H
T ss_pred hhHHHHHHHHHhhhcccccceEEeccCchH-----HHHHHHHhCccch--hhhh--hhhhhhcccccchHHHHHHH---H
Confidence 456889999999999999999999944322 2233444444322 1222 23447799998876554433 3
Q ss_pred HHhCccCCCCCCCCCCCCCCCCCCccccCCCCCCcEEEEeccccccceeeEEEe
Q 011989 417 IHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPISAALSNSFGFGGTNASLLFT 470 (473)
Q Consensus 417 l~~~~ipp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~g~gG~~~~~vl~ 470 (473)
++.+.+ .+-..++..+||.|=+.++++++
T Consensus 114 ~~~~~~-------------------------~~Gd~vll~g~G~G~s~g~~llr 142 (143)
T d1hnja2 114 VRDGRI-------------------------KPGQLVLLEAFGGGFTWGSALVR 142 (143)
T ss_dssp HHTTCS-------------------------CTTCEEEEEEEETTTEEEEEEEE
T ss_pred HHhCCC-------------------------CCCCEEEEEEEehhhhhEEEEEE
Confidence 444332 12345666688887677777764
|
| >d1mzja2 c.95.1.2 (A:184-336) Priming beta-ketosynthase from the r1128 polyketide biosynthetic pathway {Streptomyces sp. r1128 [TaxId: 140437]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Chalcone synthase-like domain: Priming beta-ketosynthase from the r1128 polyketide biosynthetic pathway species: Streptomyces sp. r1128 [TaxId: 140437]
Probab=95.21 E-value=0.094 Score=42.36 Aligned_cols=101 Identities=18% Similarity=0.129 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHcCCCCCCccEEEEcCCCCCCCCHHHHHHHHHHhhcccCCCCceeeccccchhhhHHhHHHHHHHHHHH
Q 011989 336 GAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAVL 415 (473)
Q Consensus 336 ~~~~a~~~al~~agl~~~dId~v~~hgtgt~~~D~~E~~a~~~~~~~~~~~~~~~v~s~k~~~Gh~~~AsG~~~li~~~~ 415 (473)
.+.++++++|+++|++++|||++.+|-.+.. -..++.+.++... ..+ +...-..+||+.+|+=.+.| ..
T Consensus 49 ~vp~~i~~~L~~~gl~~~dId~~i~Hq~~~~-----~~~~v~~~lgi~~--ek~-~~~~~~~~GNt~Sasip~~L---~~ 117 (153)
T d1mzja2 49 DVVPAAREALEVAGLTVGDLVAFVPHQANLR-----IIDVLVDRLGVPE--HVV-VSRDAEDTGNTSSASVALAL---DR 117 (153)
T ss_dssp HHHHHHHHHHHTTTCCGGGCSEEEECCSCHH-----HHHHHHHHHTCCT--TSE-ECCTHHHHCBCTTHHHHHHH---HH
T ss_pred HHHHHHHHHHHHhCCCcccCCEEEEcCCcHH-----HHHHHHHHhCCCc--hhc-chhhhhhcCCcccchHHHHH---HH
Confidence 3556889999999999999999999944322 3344555555322 111 22233567888877533322 23
Q ss_pred HHHhCccCCCCCCCCCCCCCCCCCCccccCCCCCCcEEEEeccccccceeeEEEeec
Q 011989 416 AIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPISAALSNSFGFGGTNASLLFTKC 472 (473)
Q Consensus 416 ~l~~~~ipp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~g~gG~~~~~vl~~~ 472 (473)
.++.+.+. +-..++..+||.|=+.+.++|+-+
T Consensus 118 ~~~~~~~~-------------------------~Gd~ill~~fG~G~s~~~~~l~~~ 149 (153)
T d1mzja2 118 LVRSGAVP-------------------------GGGPALMIGFGAGLSYAGQALLLP 149 (153)
T ss_dssp HHHHTSSC-------------------------TTCEEEEEEEETTTEEEEEEEECC
T ss_pred HHHcCCCC-------------------------CCCEEEEEEEchhhhhhEEEEEec
Confidence 44444321 223555567886655566666543
|
| >d1u0ma2 c.95.1.2 (A:202-349) Putative polyketide synthase SCO1206 {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Chalcone synthase-like domain: Putative polyketide synthase SCO1206 species: Streptomyces coelicolor [TaxId: 1902]
Probab=92.47 E-value=0.087 Score=42.30 Aligned_cols=66 Identities=17% Similarity=0.209 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHcCCCCCCccEEEEcCCCCCCCCHHHHHHHHHHhhcccCCCCceee-ccccchhhhHHhHHH
Q 011989 335 KGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFS-STKGAIGHLLGAAGA 407 (473)
Q Consensus 335 ~~~~~a~~~al~~agl~~~dId~v~~hgtgt~~~D~~E~~a~~~~~~~~~~~~~~~v~-s~k~~~Gh~~~AsG~ 407 (473)
.....+++++|+++|++++|||++.+|-.+.. -...+.+.++... .+++.+ .+-..+||+.+|+=.
T Consensus 43 ~~~~~~i~~~l~~~g~~~~did~~~~Hq~~~~-----i~~~i~~~Lgl~~--~k~~~s~~~l~~~GN~~sasi~ 109 (148)
T d1u0ma2 43 EPLAPALKELAGEHGWDASDLDFYIVHAGGPR-----ILDDLSTFLEVDP--HAFRFSRATLTEYGNIASAVVL 109 (148)
T ss_dssp HHHHHHHHHHHHTTSCCSSCCSCCEEECSHHH-----HHHHHHHHSCSCG--GGGHHHHHHHHHTCBCTTHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHCCEEEECCCCHH-----HHHHHHHHhCCCh--hhhhHHHHHHHhcCCCCcchHH
Confidence 45678899999999999999999999943322 2333444444221 122211 122456998888733
|
| >d1ee0a2 c.95.1.2 (A:236-395) Pyrone synthase (PyS, chalcone synthase 2) {Gerbera hybrid cultivar [TaxId: 18101]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Chalcone synthase-like domain: Pyrone synthase (PyS, chalcone synthase 2) species: Gerbera hybrid cultivar [TaxId: 18101]
Probab=90.52 E-value=0.88 Score=36.57 Aligned_cols=110 Identities=15% Similarity=0.120 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHHHcCCCCCCccEEEEcCCCCCCCCHHHHHHHHHHhhcccCCCCceee-ccccchhhhHHhHHHHHHHHH
Q 011989 335 KGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFS-STKGAIGHLLGAAGAVEAIFA 413 (473)
Q Consensus 335 ~~~~~a~~~al~~agl~~~dId~v~~hgtgt~~~D~~E~~a~~~~~~~~~~~~~~~v~-s~k~~~Gh~~~AsG~~~li~~ 413 (473)
......+++.|+++|++.+|||++.+|--|... ..++.+-++... ..+..+ .+-..+|++.+||=..-|-..
T Consensus 47 ~~v~~~v~~~l~~~gl~~~di~~~v~Hqgg~~I-----ld~i~~~L~L~~--~~l~~s~~vl~~yGNtSSaSI~~vL~~~ 119 (160)
T d1ee0a2 47 KNIENAAEKALSPLGITDWNSVFWMVHPGGRAI-----LDQVERKLNLKE--DKLRASRHVLSEYGNLISACVLFIIDEV 119 (160)
T ss_dssp HHHHHHHHHHHGGGTCCCGGGSEEEECCSSHHH-----HHHHHHHTTCCT--TTTHHHHHHHHHHCBCGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccCCccccceEeecCCcHHH-----HHHHHHHcCCCH--HHHHHHHHHHHHhCCCccchHHHHHHHH
Confidence 455678899999999999999999999544332 333444444322 223321 223366888888755544333
Q ss_pred HHHHHhCccCCCCCCCCCCCCCCCCCCccccCCCCCCcEEEEeccccccceeeEEEeec
Q 011989 414 VLAIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPISAALSNSFGFGGTNASLLFTKC 472 (473)
Q Consensus 414 ~~~l~~~~ipp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~g~gG~~~~~vl~~~ 472 (473)
... +...+. .........++..+||-|=+-..++|++.
T Consensus 120 ~~~---~~~~~~------------------~~~g~~~d~~ll~afG~Glt~~~~llr~~ 157 (160)
T d1ee0a2 120 RKR---SMAEGK------------------STTGEGLDCGVLFGFGPGMTVETVVLRSV 157 (160)
T ss_dssp HHH---HHHTTC------------------SBTBTTBSEEEEEEEETTTEEEEEEEEEC
T ss_pred Hhh---hhhcCC------------------CCcCCCcCEEEEEEEChHHHHHHHHHeec
Confidence 322 221110 00112345677789998888889999875
|
| >d1bi5a2 c.95.1.2 (A:236-389) Chalcone synthase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Chalcone synthase-like domain: Chalcone synthase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=90.38 E-value=1 Score=35.88 Aligned_cols=110 Identities=11% Similarity=0.059 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHHHcCCCCCCccEEEEcCCCCCCCCHHHHHHHHHHhhcccCCCCceee-ccccchhhhHHhHHHHHHHHH
Q 011989 335 KGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFS-STKGAIGHLLGAAGAVEAIFA 413 (473)
Q Consensus 335 ~~~~~a~~~al~~agl~~~dId~v~~hgtgt~~~D~~E~~a~~~~~~~~~~~~~~~v~-s~k~~~Gh~~~AsG~~~li~~ 413 (473)
......+.+.|+++|++..|||++.+|--|... ..++.+-++... .+++.+ .+-..+|++.+||=..-|-..
T Consensus 42 ~~i~~~~~~~l~~~gl~~~di~~~v~Hqgg~~I-----ld~v~~~L~L~~--~~~~~s~~vl~~yGN~SSasi~~vL~~~ 114 (154)
T d1bi5a2 42 KNITKALVEAFEPLGISDYNSIFWIAHPGGPAI-----LDQVEQKLALKP--EKMNATREVLSEYGNMSSACVLFILDEM 114 (154)
T ss_dssp HHHHHHHHHHHGGGTCCCTTSSEEEECCSSHHH-----HHHHHHHHTCCG--GGGHHHHHHHHHHCBCGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCccccceEeeccccHHH-----HHHHHHHhCCCH--HHHHHhHHHHHhcCCCCcccHHHHHHHH
Confidence 455678899999999999999999999544433 334455555332 122321 123366888877755444333
Q ss_pred HHHHHhCccCCCCCCCCCCCCCCCCCCccccCCCCCCcEEEEeccccccceeeEEEeec
Q 011989 414 VLAIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPISAALSNSFGFGGTNASLLFTKC 472 (473)
Q Consensus 414 ~~~l~~~~ipp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~g~gG~~~~~vl~~~ 472 (473)
... +...+.. ........++..+||-|=+...++|++.
T Consensus 115 ~~~---~~~~~~~------------------~~g~~~~~~~~~aFG~Glt~~~~llr~~ 152 (154)
T d1bi5a2 115 RKK---STQNGLK------------------TTGEGLEWGVLFGFGPGLTIETVVLRSV 152 (154)
T ss_dssp HHH---HHHTTCS------------------BTTTTCSEEEEEEEETTTEEEEEEEEEC
T ss_pred HHh---hhccCCc------------------ccCCCcCEEEEEEEchHHhHHHHHHhcC
Confidence 222 2211110 1112345677779998888888999874
|
| >d1u0ua2 c.95.1.2 (A:238-393) Dihydropinosylvin synthase {Scots pine (Pinus sylvestris) [TaxId: 3349]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Chalcone synthase-like domain: Dihydropinosylvin synthase species: Scots pine (Pinus sylvestris) [TaxId: 3349]
Probab=87.08 E-value=1.8 Score=34.44 Aligned_cols=109 Identities=12% Similarity=0.080 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHHHcCCCCCCccEEEEcCCCCCCCCHHHHHHHHHHhhcccCCCCceee-ccccchhhhHHhHHHHHHHHH
Q 011989 335 KGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFS-STKGAIGHLLGAAGAVEAIFA 413 (473)
Q Consensus 335 ~~~~~a~~~al~~agl~~~dId~v~~hgtgt~~~D~~E~~a~~~~~~~~~~~~~~~v~-s~k~~~Gh~~~AsG~~~li~~ 413 (473)
......+++.|++++++.+|||++.+|--|... ..++.+-++... .+++.+ .+-..+|++.+|+=..-|-.+
T Consensus 43 ~~i~~~~~~~l~~~~~~~~did~~i~Hqgg~~I-----ld~v~~~L~L~~--~k~~~s~~~l~~~GN~sSasip~~L~~~ 115 (156)
T d1u0ua2 43 ANIENCMVEAFSQFKISDWNKLFWVVHPGGRAI-----LDRVEAKLNLDP--TKLIPTRHVMSEYGNMSSACVHFILDQT 115 (156)
T ss_dssp HHHHHHHHHHHGGGTCCCGGGSEEEECCSCHHH-----HHHHHHHHTCCT--TTTHHHHHHHHHHCBCGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCChhhCceEeecCCcHHH-----HHHHHHHhCCCc--ccchhhHHHHhhcCCCCcccHHHHHHHH
Confidence 456678899999999999999999999544433 333444444332 123321 122366888777644433333
Q ss_pred HHHHH-hCccCCCCCCCCCCCCCCCCCCccccCCCCCCcEEEEeccccccceeeEEEeec
Q 011989 414 VLAIH-HGVAPLTLNLAKPDPIFNDNFMPLTASKDMPISAALSNSFGFGGTNASLLFTKC 472 (473)
Q Consensus 414 ~~~l~-~~~ipp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~g~gG~~~~~vl~~~ 472 (473)
...-. .+.. ........++..+||-|=+...+||++.
T Consensus 116 ~~~~~~~~~~----------------------~~~~~~~~~~~~gfG~Glt~~~~llr~~ 153 (156)
T d1u0ua2 116 RKASLQNGCS----------------------TTGEGLEMGVLFGFGPGLTIETVVLKSV 153 (156)
T ss_dssp HHHHHHHTCS----------------------BSBTTBSEEEEEEEETTTEEEEEEEEEC
T ss_pred HHhhhhccCC----------------------CcCCCCCEEEEEEECHHHhHHHHHHeeC
Confidence 22211 1110 1112345777789998888888998875
|
| >d1u0ma1 c.95.1.2 (A:2-201) Putative polyketide synthase SCO1206 {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Chalcone synthase-like domain: Putative polyketide synthase SCO1206 species: Streptomyces coelicolor [TaxId: 1902]
Probab=84.04 E-value=0.63 Score=38.96 Aligned_cols=29 Identities=21% Similarity=0.244 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHcCCCCCCccEEEEcCCCCC
Q 011989 337 AILAMTRALKQSGLQSHQVDYVNAHATSTP 366 (473)
Q Consensus 337 ~~~a~~~al~~agl~~~dId~v~~hgtgt~ 366 (473)
..++++++|+++|++++|||++... +.|.
T Consensus 79 a~~Aa~~aL~~ag~~~~dId~lI~~-s~t~ 107 (200)
T d1u0ma1 79 VPAVIQRALDDAELLATDIDVIIYV-SCTG 107 (200)
T ss_dssp HHHHHHHHHHHHTCCGGGCSEEEEE-CSSS
T ss_pred HHHHHHHHHHHcCCChhhhheEEEe-ccCC
Confidence 4678999999999999999998754 4443
|
| >d1ub7a1 c.95.1.2 (A:2-173) Ketoacyl-ACP synthase III (FabH) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Chalcone synthase-like domain: Ketoacyl-ACP synthase III (FabH) species: Thermus thermophilus [TaxId: 274]
Probab=83.09 E-value=0.52 Score=38.49 Aligned_cols=46 Identities=22% Similarity=0.096 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHcCCCCCCccEEEEcCCCCCC-CCHHHHHHHHHHhh
Q 011989 335 KGAILAMTRALKQSGLQSHQVDYVNAHATSTPL-GDTVEATAIRTVFS 381 (473)
Q Consensus 335 ~~~~~a~~~al~~agl~~~dId~v~~hgtgt~~-~D~~E~~a~~~~~~ 381 (473)
.-..++.+++|+++|++|+|||++.... .|+. ..+.-+..+++-++
T Consensus 51 ~ma~~Aa~~aL~~agi~~~dIdlli~~s-~t~~~~~p~~a~~v~~~Lg 97 (172)
T d1ub7a1 51 DLAFKAVEDLLRRHPGALEGVDAVIVAT-NTPDALFPDTAALVQARFG 97 (172)
T ss_dssp HHHHHHHHHHHHHSTTTTTTEEEEEEEC-SSCSEEESCHHHHHHHHTT
T ss_pred HHHHHHHHHHHhhcCcccccceEEEEec-ccccccccchHHHHHHHhc
Confidence 4456789999999999999999988763 3432 23334444555555
|
| >d1mzja1 c.95.1.2 (A:3-183) Priming beta-ketosynthase from the r1128 polyketide biosynthetic pathway {Streptomyces sp. r1128 [TaxId: 140437]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Chalcone synthase-like domain: Priming beta-ketosynthase from the r1128 polyketide biosynthetic pathway species: Streptomyces sp. r1128 [TaxId: 140437]
Probab=81.86 E-value=2 Score=35.05 Aligned_cols=77 Identities=19% Similarity=0.123 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHcCCCCCCccEEEEcCCCCCC-CCHHHHHHHHHHhhcccCCCCceeeccccchhhhHHhHHHHHHHHH
Q 011989 335 KGAILAMTRALKQSGLQSHQVDYVNAHATSTPL-GDTVEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFA 413 (473)
Q Consensus 335 ~~~~~a~~~al~~agl~~~dId~v~~hgtgt~~-~D~~E~~a~~~~~~~~~~~~~~~v~s~k~~~Gh~~~AsG~~~li~~ 413 (473)
.-..++.+++|++++++++|||++..+ |.++. .-+.-+..++..++.. .+..--+ + ...++++..|-.+
T Consensus 60 ~ma~~Aa~~aL~~a~~~~~dId~li~~-s~~~~~~~p~~a~~v~~~l~~~----~~~~~Dv--~---~~C~g~~~aL~~A 129 (181)
T d1mzja1 60 VMGVAASRRALEHAGVDPAEIDLVVVS-TMTNFVHTPPLSVAIAHELGAD----NAGGFDL--S---AACAGFCHALSIA 129 (181)
T ss_dssp HHHHHHHHHHHHHHTCCGGGCCEEEEE-CSCCCCCSSCHHHHHHHHHTCT----TCEEEEE--E---CGGGHHHHHHHHH
T ss_pred HHhHHHHHhhhhhccCChhHCeEEEEe-ccCCccccccHHHHHHHhhcCC----CccceeH--H---hhhccHHHHHHHH
Confidence 345689999999999999999998865 44433 2333445566665543 1222111 1 1233445555555
Q ss_pred HHHHHhCc
Q 011989 414 VLAIHHGV 421 (473)
Q Consensus 414 ~~~l~~~~ 421 (473)
...|+.+.
T Consensus 130 ~~~i~~~~ 137 (181)
T d1mzja1 130 ADAVESGG 137 (181)
T ss_dssp HHHHHHSS
T ss_pred hCHhhcCC
Confidence 55566543
|
| >d1hnja1 c.95.1.2 (A:1-174) Ketoacyl-ACP synthase III (FabH) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Chalcone synthase-like domain: Ketoacyl-ACP synthase III (FabH) species: Escherichia coli [TaxId: 562]
Probab=81.06 E-value=2.2 Score=34.47 Aligned_cols=48 Identities=17% Similarity=0.249 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHcCCCCCCccEEEEcCCCCCC-CCHHHHHHHHHHhhcc
Q 011989 335 KGAILAMTRALKQSGLQSHQVDYVNAHATSTPL-GDTVEATAIRTVFSDH 383 (473)
Q Consensus 335 ~~~~~a~~~al~~agl~~~dId~v~~hgtgt~~-~D~~E~~a~~~~~~~~ 383 (473)
.-..++.+++|++++++++|||++.... .++. .-+.-+.-+++.++.+
T Consensus 53 ~la~~Aa~~al~~a~~~~~~Id~li~~s-~~~~~~~P~~a~~v~~~Lgl~ 101 (174)
T d1hnja1 53 TMGFEAATRAIEMAGIEKDQIGLIVVAT-TSATHAFPSAACQIQSMLGIK 101 (174)
T ss_dssp HHHHHHHHHHHHHHTCCGGGCCEEEEEC-SCCSCSSSCHHHHHHHHHTCC
T ss_pred HHHHHHHHHhhhhcccccccccEEEEec-CCccccccchhhhhhhccCCC
Confidence 3456889999999999999999877653 3333 2244555566666654
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