Citrus Sinensis ID: 012002
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 473 | 2.2.26 [Sep-21-2011] | |||||||
| Q94AZ2 | 526 | Sugar transport protein 1 | yes | no | 0.995 | 0.895 | 0.824 | 0.0 | |
| O04249 | 513 | Sugar transport protein 7 | no | no | 0.966 | 0.890 | 0.606 | 1e-167 | |
| Q41144 | 523 | Sugar carrier protein C O | N/A | no | 0.959 | 0.868 | 0.589 | 1e-154 | |
| Q10710 | 522 | Sugar carrier protein A O | N/A | no | 0.959 | 0.869 | 0.588 | 1e-154 | |
| Q9SBA7 | 507 | Sugar transport protein 8 | no | no | 0.970 | 0.905 | 0.594 | 1e-152 | |
| Q8GW61 | 504 | Sugar transport protein 1 | no | no | 0.945 | 0.886 | 0.586 | 1e-152 | |
| Q9LT15 | 514 | Sugar transport protein 1 | no | no | 0.961 | 0.885 | 0.555 | 1e-152 | |
| Q9SFG0 | 507 | Sugar transport protein 6 | no | no | 0.970 | 0.905 | 0.594 | 1e-152 | |
| Q9SX48 | 517 | Sugar transport protein 9 | no | no | 0.949 | 0.868 | 0.566 | 1e-151 | |
| P23586 | 522 | Sugar transport protein 1 | no | no | 0.983 | 0.890 | 0.565 | 1e-150 |
| >sp|Q94AZ2|STP13_ARATH Sugar transport protein 13 OS=Arabidopsis thaliana GN=STP13 PE=1 SV=2 | Back alignment and function desciption |
|---|
Score = 812 bits (2098), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 395/479 (82%), Positives = 428/479 (89%), Gaps = 8/479 (1%)
Query: 1 MPHFLKKFFPVVYRRTQQG--DDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRRLG 58
MP FL+KFFPVVYR+ G DSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTR LG
Sbjct: 50 MPDFLEKFFPVVYRKVVAGADKDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRTLG 109
Query: 59 RRLTMLIAGIFFIAGVAFNVAAQNLAMLIVGRILLGCGVGFANQAVPLFLSEIAPTRIRG 118
RRLTMLIAG+FFI GVA N AQ+LAMLI GRILLGCGVGFANQAVPLFLSEIAPTRIRG
Sbjct: 110 RRLTMLIAGVFFIIGVALNAGAQDLAMLIAGRILLGCGVGFANQAVPLFLSEIAPTRIRG 169
Query: 119 GLNILFQLNVTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVGSLLVTDTPNS 178
GLNILFQLNVTIGILFANLVNYGT+ IK WGWR+SLGLAGIPA LLTVG+LLVT+TPNS
Sbjct: 170 GLNILFQLNVTIGILFANLVNYGTAKIKGGWGWRLSLGLAGIPALLLTVGALLVTETPNS 229
Query: 179 LIERGRFEEGKAVLRKIRGTDKIEPEFLELVEASRIAKEVKHPFRNLLKRRNRPQLVIAV 238
L+ERGR +EGKAVLR+IRGTD +EPEF +L+EASR+AKEVKHPFRNLL+RRNRPQLVIAV
Sbjct: 230 LVERGRLDEGKAVLRRIRGTDNVEPEFADLLEASRLAKEVKHPFRNLLQRRNRPQLVIAV 289
Query: 239 ALQIFQQCTGINAIMFYAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRR 298
ALQIFQQCTGINAIMFYAPVLF TLGFG ASLYS V+TGAVNVLSTLVSIYSVDKVGRR
Sbjct: 290 ALQIFQQCTGINAIMFYAPVLFSTLGFGSDASLYSAVVTGAVNVLSTLVSIYSVDKVGRR 349
Query: 299 MLLLEAGIQMFLSQTVIAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGW 358
+LLLEAG+QMF SQ VIAIILG+KV D S +L GFA+LVV+MICT+++AFAWSWGPLGW
Sbjct: 350 VLLLEAGVQMFFSQVVIAIILGVKVTDTSTNLSKGFAILVVVMICTYVAAFAWSWGPLGW 409
Query: 359 LIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHFKFGIFLFFSGWVLIMSCFV 418
LIPSETFPLETRSAGQSVTVCVNLLFTF+IAQAFLSMLCHFKFGIF+FFS WVLIMS FV
Sbjct: 410 LIPSETFPLETRSAGQSVTVCVNLLFTFIIAQAFLSMLCHFKFGIFIFFSAWVLIMSVFV 469
Query: 419 FFLLPETKNVPIEEMTERVWKQHWLWKNFMVDDGFDDDE----PKKNGHRNGFDPVSQL 473
FLLPETKN+PIEEMTERVWK+HW W FM D +D E K NG NGFDP ++L
Sbjct: 470 MFLLPETKNIPIEEMTERVWKKHWFWARFM--DDHNDHEFVNGEKSNGKSNGFDPSTRL 526
|
Mediates an active uptake of hexoses, probably by sugar/hydrogen symport. Arabidopsis thaliana (taxid: 3702) |
| >sp|O04249|STP7_ARATH Sugar transport protein 7 OS=Arabidopsis thaliana GN=STP7 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 588 bits (1516), Expect = e-167, Method: Compositional matrix adjust.
Identities = 279/460 (60%), Positives = 354/460 (76%), Gaps = 3/460 (0%)
Query: 1 MPHFLKKFFPVVYRRTQQGDDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRR 60
M FL++FF VY + +Q +SNYCKYDNQGL FTSSLYLAGL +T AS TR GRR
Sbjct: 54 MDEFLEEFFHTVYEKKKQAHESNYCKYDNQGLAAFTSSLYLAGLVSTLVASPITRNYGRR 113
Query: 61 LTMLIAGIFFIAGVAFNVAAQNLAMLIVGRILLGCGVGFANQAVPLFLSEIAPTRIRGGL 120
+++ GI F+ G N A NLAML+ GRI+LG G+GF NQAVPL+LSE+APT +RGGL
Sbjct: 114 ASIVCGGISFLIGSGLNAGAVNLAMLLAGRIMLGVGIGFGNQAVPLYLSEVAPTHLRGGL 173
Query: 121 NILFQLNVTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVGSLLVTDTPNSLI 180
N++FQL TIGI AN+VNYGT +K WGWR+SLGLA PA L+T+G + +TPNSL+
Sbjct: 174 NMMFQLATTIGIFTANMVNYGTQQLKP-WGWRLSLGLAAFPALLMTLGGYFLPETPNSLV 232
Query: 181 ERGRFEEGKAVLRKIRGTDKIEPEFLELVEASRIAKEVKHPFRNLLKRRNRPQLVIAVAL 240
ERG E G+ VL K+RGT+ + E ++V+AS +A +KHPFRN+L++R+RPQLV+A+ +
Sbjct: 233 ERGLTERGRRVLVKLRGTENVNAELQDMVDASELANSIKHPFRNILQKRHRPQLVMAICM 292
Query: 241 QIFQQCTGINAIMFYAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRML 300
+FQ TGIN+I+FYAPVLF+T+GFGG+ASLYS+ +TGAV VLST +SI VD++GRR L
Sbjct: 293 PMFQILTGINSILFYAPVLFQTMGFGGNASLYSSALTGAVLVLSTFISIGLVDRLGRRAL 352
Query: 301 LLEAGIQMFLSQTVIAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLI 360
L+ GIQM + Q ++A+ILG+K D+ E L G++V+VVI IC F+ AF WSWGPLGW I
Sbjct: 353 LITGGIQMIICQVIVAVILGVKFGDNQE-LSKGYSVIVVIFICLFVVAFGWSWGPLGWTI 411
Query: 361 PSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHFKFGIFLFFSGWVLIMSCFVFF 420
PSE FPLETRSAGQS+TV VNLLFTF+IAQAFL +LC FKFGIFLFF+GWV +M+ FV+F
Sbjct: 412 PSEIFPLETRSAGQSITVAVNLLFTFIIAQAFLGLLCAFKFGIFLFFAGWVTVMTIFVYF 471
Query: 421 LLPETKNVPIEEMTERVWKQHWLWKNFMVDDGFDDDEPKK 460
LLPETK VPIEEMT +W +HW WK + D +DE K
Sbjct: 472 LLPETKGVPIEEMT-LLWSKHWFWKKVLPDATNLEDESKN 510
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Mediates an active uptake of hexoses, probably by sugar/hydrogen symport. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q41144|STC_RICCO Sugar carrier protein C OS=Ricinus communis GN=STC PE=2 SV=1 | Back alignment and function description |
|---|
Score = 544 bits (1402), Expect = e-154, Method: Compositional matrix adjust.
Identities = 270/458 (58%), Positives = 348/458 (75%), Gaps = 4/458 (0%)
Query: 1 MPHFLKKFFPVVYRRTQQGDDSN-YCKYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGR 59
M FLKKFFP VYR+ + + SN YC+YD+Q L +FTSSLYLA L A+ AS TR+ GR
Sbjct: 52 MDSFLKKFFPSVYRKKKADESSNQYCQYDSQTLTMFTSSLYLAALIASLVASTITRKFGR 111
Query: 60 RLTMLIAGIFFIAGVAFNVAAQNLAMLIVGRILLGCGVGFANQAVPLFLSEIAPTRIRGG 119
+L+ML G+ F AG N AA+ + MLI+GRILLG G+GFANQ+VPL+LSE+AP + RG
Sbjct: 112 KLSMLFGGVLFCAGAIINGAAKAVWMLILGRILLGFGIGFANQSVPLYLSEMAPYKYRGA 171
Query: 120 LNILFQLNVTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVGSLLVTDTPNSL 179
LNI FQL++TIGIL AN++NY + IK WGWR+SLG A +PA ++TVGSL++ DTPNS+
Sbjct: 172 LNIGFQLSITIGILVANVLNYFFAKIKGGWGWRLSLGGAMVPALIITVGSLVLPDTPNSM 231
Query: 180 IERGRFEEGKAVLRKIRGTDKIEPEFLELVEASRIAKEVKHPFRNLLKRRNRPQLVIAVA 239
IERG+ EE +A L+++RG + ++ EF +LV AS +K+V+HP+RNLL+R+ RP L +A+A
Sbjct: 232 IERGQHEEARAHLKRVRGVEDVDEEFTDLVHASEDSKKVEHPWRNLLQRKYRPHLSMAIA 291
Query: 240 LQIFQQCTGINAIMFYAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRM 299
+ FQQ TGIN IMFYAPVLF T+GFG A+L S VITG VNV +T+VSIY VDK GRR
Sbjct: 292 IPFFQQLTGINVIMFYAPVLFDTIGFGSDAALMSAVITGLVNVFATMVSIYGVDKWGRRF 351
Query: 300 LLLEAGIQMFLSQTVIAIILGIK--VKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLG 357
L LE G+QM + Q ++A +G K V DL +AV+VV+ IC ++S FAWSWGPLG
Sbjct: 352 LFLEGGVQMLICQAIVAACIGAKFGVDGAPGDLPQWYAVVVVLFICIYVSGFAWSWGPLG 411
Query: 358 WLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHFKFGIFLFFSGWVLIMSCF 417
WL+PSE FPLE RSA QSV V VN+ FTFV+AQ FL MLCH KFG+F+FFS +VLIMS F
Sbjct: 412 WLVPSEIFPLEIRSAAQSVNVSVNMFFTFVVAQVFLIMLCHLKFGLFIFFSFFVLIMSIF 471
Query: 418 VFFLLPETKNVPIEEMTERVWKQHWLWKNFMVDDGFDD 455
V++ LPETK +PIEEM + VWKQHW W ++VD+ + +
Sbjct: 472 VYYFLPETKGIPIEEMGQ-VWKQHWYWSRYVVDEDYPN 508
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Ricinus communis (taxid: 3988) |
| >sp|Q10710|STA_RICCO Sugar carrier protein A OS=Ricinus communis GN=STA PE=2 SV=1 | Back alignment and function description |
|---|
Score = 544 bits (1401), Expect = e-154, Method: Compositional matrix adjust.
Identities = 272/462 (58%), Positives = 349/462 (75%), Gaps = 8/462 (1%)
Query: 1 MPHFLKKFFPVVYRRTQQGDDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRR 60
M FL+KFF VY + + ++NYCKYD+Q L FTSSLYLAGL A+ A TR GRR
Sbjct: 54 MDAFLEKFFRSVYLKKKHAHENNYCKYDDQRLAAFTSSLYLAGLAASLVAGPITRIYGRR 113
Query: 61 LTMLIAGIFFIAGVAFNVAAQNLAMLIVGRILLGCGVGFANQAVPLFLSEIAPTRIRGGL 120
+++ GI F+ G A N A NLAML++GRI+LG G+GF NQAVPL+LSE+APT +RGGL
Sbjct: 114 ASIISGGISFLIGAALNATAINLAMLLLGRIMLGVGIGFGNQAVPLYLSEMAPTHLRGGL 173
Query: 121 NILFQLNVTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVGSLLVTDTPNSLI 180
NI+FQL T GI AN+VNYGT ++S WGWR+SLGLA PA L+T+G LL+ +TPNSLI
Sbjct: 174 NIMFQLATTSGIFTANMVNYGTHKLES-WGWRLSLGLAAAPALLMTIGGLLLPETPNSLI 232
Query: 181 ERGRFEEGKAVLRKIRGTDKIEPEFLELVEASRIAKEVKHPFRNLLKRRNRPQLVIAVAL 240
E+G E+G+ VL KIRGT ++ EF ++++AS +A +KHPFRN+L++RNRPQLV+A+ +
Sbjct: 233 EQGLHEKGRNVLEKIRGTKHVDAEFQDMLDASELANSIKHPFRNILEKRNRPQLVMAIFM 292
Query: 241 QIFQQCTGINAIMFYAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRML 300
FQ TGIN I+FYAP LF+++GFGG+A+LYS+ +TGAV ST +SI +VD++GRR L
Sbjct: 293 PTFQILTGINIILFYAPPLFQSMGFGGNAALYSSAVTGAVLCSSTFISIATVDRLGRRFL 352
Query: 301 LLEAGIQMFLSQTVIAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLI 360
L+ GIQM Q ++AIILG+K D+ + L F+VLVVIMIC F+ AF WSWGPLGW +
Sbjct: 353 LISGGIQMITCQVIVAIILGVKFGDN-QQLSKSFSVLVVIMICLFVLAFGWSWGPLGWTV 411
Query: 361 PSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHFKFGIFLFFSGWVLIMSCFVFF 420
PSE FPLETRSAGQS+TV VNL FTFVIAQ+F S+LC FKFGIFLFF+GWV +M+ FV+
Sbjct: 412 PSEIFPLETRSAGQSITVAVNLFFTFVIAQSFPSLLCAFKFGIFLFFAGWVTVMTAFVYI 471
Query: 421 LLPETKNVPIEEMTERVWKQHWLWKNFM-----VDDGFDDDE 457
LPETK VPIEEM +W++HW WK + VDD + E
Sbjct: 472 FLPETKGVPIEEMI-FLWRKHWFWKKIVPGQPEVDDSRESME 512
|
Ricinus communis (taxid: 3988) |
| >sp|Q9SBA7|STP8_ARATH Sugar transport protein 8 OS=Arabidopsis thaliana GN=STP8 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 538 bits (1386), Expect = e-152, Method: Compositional matrix adjust.
Identities = 274/461 (59%), Positives = 338/461 (73%), Gaps = 2/461 (0%)
Query: 1 MPHFLKKFFPVVYRRTQQGDDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRR 60
M FLK+FFP VY R + ++NYCKYDNQ LQLFTSSLYLA L A+FFAS T +LGRR
Sbjct: 49 MDDFLKEFFPSVYERKKHAHENNYCKYDNQFLQLFTSSLYLAALVASFFASATCSKLGRR 108
Query: 61 LTMLIAGIFFIAGVAFNVAAQNLAMLIVGRILLGCGVGFANQAVPLFLSEIAPTRIRGGL 120
TM +A IFF+ GV A N+ MLI+GRILLG GVGF NQAVPLFLSEIAP R+RGGL
Sbjct: 109 PTMQLASIFFLIGVGLAAGAVNIYMLIIGRILLGFGVGFGNQAVPLFLSEIAPARLRGGL 168
Query: 121 NILFQLNVTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVGSLLVTDTPNSLI 180
NI+FQL VTIGIL AN+VNY TS I +GWRI+LG AGIPA +L GSLL+ +TP SLI
Sbjct: 169 NIVFQLMVTIGILIANIVNYFTSSIHP-YGWRIALGGAGIPALILLFGSLLICETPTSLI 227
Query: 181 ERGRFEEGKAVLRKIRGTDKIEPEFLELVEASRIAKEVKHPFRNLLKRRNRPQLVIAVAL 240
ER + +EGK L+KIRG + ++ E+ +V A IA++VK P+ L+K +RP VI + L
Sbjct: 228 ERNKTKEGKETLKKIRGVEDVDEEYESIVHACDIARQVKDPYTKLMKPASRPPFVIGMLL 287
Query: 241 QIFQQCTGINAIMFYAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRML 300
Q FQQ TGINAIMFYAPVLF+T+GFG A+L S V+TG +NVLST V I+ VDK GRR L
Sbjct: 288 QFFQQFTGINAIMFYAPVLFQTVGFGNDAALLSAVVTGTINVLSTFVGIFLVDKTGRRFL 347
Query: 301 LLEAGIQMFLSQTVIAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLI 360
LL++ + M + Q VI IIL K D + L A++VVI +C ++ FAWSWGPLGWLI
Sbjct: 348 LLQSSVHMLICQLVIGIILA-KDLDVTGTLARPQALVVVIFVCVYVMGFAWSWGPLGWLI 406
Query: 361 PSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHFKFGIFLFFSGWVLIMSCFVFF 420
PSETFPLETR+ G ++ V N+ FTFVIAQAFLSMLC K GIF FFSGW+++M F F
Sbjct: 407 PSETFPLETRTEGFALAVSCNMFFTFVIAQAFLSMLCAMKSGIFFFFSGWIVVMGLFALF 466
Query: 421 LLPETKNVPIEEMTERVWKQHWLWKNFMVDDGFDDDEPKKN 461
+PETK V I++M + VWK HW WK FM+++ D E + +
Sbjct: 467 FVPETKGVSIDDMRDSVWKLHWYWKRFMLEEDEHDVEKRTD 507
|
Mediates an active uptake of hexoses, probably by sugar/hydrogen symport. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8GW61|STP14_ARATH Sugar transport protein 14 OS=Arabidopsis thaliana GN=STP14 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 538 bits (1385), Expect = e-152, Method: Compositional matrix adjust.
Identities = 265/452 (58%), Positives = 340/452 (75%), Gaps = 5/452 (1%)
Query: 1 MPHFLKKFFPVVYRRTQQG-DDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGR 59
M FLK+FFP +Y+R Q ++++YCKYDNQ L LFTSSLY AGL +TF ASY TR GR
Sbjct: 53 MDDFLKEFFPGIYKRKQMHLNETDYCKYDNQILTLFTSSLYFAGLISTFGASYVTRIYGR 112
Query: 60 RLTMLIAGIFFIAGVAFNVAAQNLAMLIVGRILLGCGVGFANQAVPLFLSEIAPTRIRGG 119
R ++L+ + F G N AA+N+ MLI+GRI LG G+GF NQAVPL+LSE+AP +IRG
Sbjct: 113 RGSILVGSVSFFLGGVINAAAKNILMLILGRIFLGIGIGFGNQAVPLYLSEMAPAKIRGT 172
Query: 120 LNILFQLNVTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVGSLLVTDTPNSL 179
+N LFQL IGIL ANL+NY T I WGWR+SLGLA +PA L+ +G L++ +TPNSL
Sbjct: 173 VNQLFQLTTCIGILVANLINYKTEQIHP-WGWRLSLGLATVPAILMFLGGLVLPETPNSL 231
Query: 180 IERGRFEEGKAVLRKIRGTDKIEPEFLELVEASRIAKEVKHPFRNLLKRRNRPQLVI-AV 238
+E+G+ E+ KAVL K+RGT+ IE EF +LVEAS A+ VK+PFRNLL RRNRPQLVI A+
Sbjct: 232 VEQGKLEKAKAVLIKVRGTNNIEAEFQDLVEASDAARAVKNPFRNLLARRNRPQLVIGAI 291
Query: 239 ALQIFQQCTGINAIMFYAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRR 298
L FQQ TG+N+I+FYAPV+F++LGFGGSASL S+ IT A V++ ++S+YS DK GRR
Sbjct: 292 GLPAFQQLTGMNSILFYAPVMFQSLGFGGSASLISSTITNAALVVAAIMSMYSADKFGRR 351
Query: 299 MLLLEAGIQMFLSQTVIAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGW 358
LLLEA ++MF V+ + L +K + E L +++V++IC F+ A+ SWGP+GW
Sbjct: 352 FLLLEASVEMFCYMVVVGVTLALKFGEGKE-LPKSLGLILVVLICLFVLAYGRSWGPMGW 410
Query: 359 LIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHFKFGIFLFFSGWVLIMSCFV 418
L+PSE FPLETRSAGQSV VCVNL FT +IAQ FL LCH K+GIFL F+G +L M FV
Sbjct: 411 LVPSELFPLETRSAGQSVVVCVNLFFTALIAQCFLVSLCHLKYGIFLLFAGLILGMGSFV 470
Query: 419 FFLLPETKNVPIEEMTERVWKQHWLWKNFMVD 450
+FLLPETK VPIEE+ +W+QHWLWK ++ D
Sbjct: 471 YFLLPETKQVPIEEVY-LLWRQHWLWKKYVED 501
|
Mediates an active uptake of hexoses, probably by sugar/hydrogen symport. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LT15|STP10_ARATH Sugar transport protein 10 OS=Arabidopsis thaliana GN=STP10 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 538 bits (1385), Expect = e-152, Method: Compositional matrix adjust.
Identities = 257/463 (55%), Positives = 342/463 (73%), Gaps = 8/463 (1%)
Query: 1 MPHFLKKFFPVVYRRTQQGD-DSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGR 59
M FL KFFP V + ++ D+ YCK+DNQ LQLFTSSLYLA L A+F AS TR+ GR
Sbjct: 52 MEEFLTKFFPQVESQMKKAKHDTAYCKFDNQMLQLFTSSLYLAALVASFMASVITRKHGR 111
Query: 60 RLTMLIAGIFFIAGVAFNVAAQNLAMLIVGRILLGCGVGFANQAVPLFLSEIAPTRIRGG 119
+++M I G+ F+ G FN A N++MLI+GR+LLG GVGFANQ+ P++LSE+AP +IRG
Sbjct: 112 KVSMFIGGLAFLIGALFNAFAVNVSMLIIGRLLLGVGVGFANQSTPVYLSEMAPAKIRGA 171
Query: 120 LNILFQLNVTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVGSLLVTDTPNSL 179
LNI FQ+ +TIGIL ANL+NYGTS + +Q GWR+SLGLA +PA ++ +GS ++ DTPNS+
Sbjct: 172 LNIGFQMAITIGILVANLINYGTSKM-AQHGWRVSLGLAAVPAVVMVIGSFILPDTPNSM 230
Query: 180 IERGRFEEGKAVLRKIRGTDKIEPEFLELVEASRIAKEVKHPFRNLLKRRNRPQLVIAVA 239
+ERG+ EE K +L+KIRG D ++ EF +L++A AK+V++P++N+++ + RP L+ A
Sbjct: 231 LERGKNEEAKQMLKKIRGADNVDHEFQDLIDAVEAAKKVENPWKNIMESKYRPALIFCSA 290
Query: 240 LQIFQQCTGINAIMFYAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRM 299
+ FQQ TGIN IMFYAPVLFKTLGFG A+L S VITG VN+LST VSIY+VD+ GRR+
Sbjct: 291 IPFFQQITGINVIMFYAPVLFKTLGFGDDAALMSAVITGVVNMLSTFVSIYAVDRYGRRL 350
Query: 300 LLLEAGIQMFLSQTVIAIILGIKV-KDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGW 358
L LE GIQMF+ Q ++ +G + + L A ++ IC +++ FAWSWGPLGW
Sbjct: 351 LFLEGGIQMFICQLLVGSFIGARFGTSGTGTLTPATADWILAFICVYVAGFAWSWGPLGW 410
Query: 359 LIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHFKFGIFLFFSGWVLIMSCFV 418
L+PSE PLE R AGQ++ V VN+ FTF+I Q FL+MLCH KFG+F FF+ V IM+ F+
Sbjct: 411 LVPSEICPLEIRPAGQAINVSVNMFFTFLIGQFFLTMLCHMKFGLFYFFASMVAIMTVFI 470
Query: 419 FFLLPETKNVPIEEMTERVWKQHWLWKNFMVDD----GFDDDE 457
+FLLPETK VPIEEM RVWKQHW WK ++ +D G DD+
Sbjct: 471 YFLLPETKGVPIEEMG-RVWKQHWFWKKYIPEDAIIGGHDDNN 512
|
Mediates an active uptake of hexoses, probably by sugar/hydrogen symport. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SFG0|STP6_ARATH Sugar transport protein 6 OS=Arabidopsis thaliana GN=STP6 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 537 bits (1383), Expect = e-152, Method: Compositional matrix adjust.
Identities = 274/461 (59%), Positives = 336/461 (72%), Gaps = 2/461 (0%)
Query: 1 MPHFLKKFFPVVYRRTQQGDDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRR 60
M FLK+FFP V+ R + ++NYCKYDNQ LQLFTSSLYLA L A+F AS T +LGRR
Sbjct: 48 MDDFLKEFFPAVWERKKHVHENNYCKYDNQFLQLFTSSLYLAALVASFVASATCSKLGRR 107
Query: 61 LTMLIAGIFFIAGVAFNVAAQNLAMLIVGRILLGCGVGFANQAVPLFLSEIAPTRIRGGL 120
TM A IFF+ GV A NL MLI+GR+ LG GVGF NQAVPLFLSEIAP ++RGGL
Sbjct: 108 PTMQFASIFFLIGVGLTAGAVNLVMLIIGRLFLGFGVGFGNQAVPLFLSEIAPAQLRGGL 167
Query: 121 NILFQLNVTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVGSLLVTDTPNSLI 180
NI+FQL VTIGIL AN+VNY T+ + +GWRI+LG AGIPA +L GSLL+ +TP SLI
Sbjct: 168 NIVFQLMVTIGILIANIVNYFTATVHP-YGWRIALGGAGIPAVILLFGSLLIIETPTSLI 226
Query: 181 ERGRFEEGKAVLRKIRGTDKIEPEFLELVEASRIAKEVKHPFRNLLKRRNRPQLVIAVAL 240
ER + EEGK LRKIRG D I E+ +V A IA +VK P+R LLK +RP +I + L
Sbjct: 227 ERNKNEEGKEALRKIRGVDDINDEYESIVHACDIASQVKDPYRKLLKPASRPPFIIGMLL 286
Query: 241 QIFQQCTGINAIMFYAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRML 300
Q+FQQ TGINAIMFYAPVLF+T+GFG A+L S VITG++NVL+T V IY VD+ GRR L
Sbjct: 287 QLFQQFTGINAIMFYAPVLFQTVGFGSDAALLSAVITGSINVLATFVGIYLVDRTGRRFL 346
Query: 301 LLEAGIQMFLSQTVIAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLI 360
LL++ + M + Q +I IIL K + L A++VVI +C ++ FAWSWGPLGWLI
Sbjct: 347 LLQSSVHMLICQLIIGIILA-KDLGVTGTLGRPQALVVVIFVCVYVMGFAWSWGPLGWLI 405
Query: 361 PSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHFKFGIFLFFSGWVLIMSCFVFF 420
PSETFPLETRSAG +V V N+ FTFVIAQAFLSMLC + GIF FFSGW+++M F FF
Sbjct: 406 PSETFPLETRSAGFAVAVSCNMFFTFVIAQAFLSMLCGMRSGIFFFFSGWIIVMGLFAFF 465
Query: 421 LLPETKNVPIEEMTERVWKQHWLWKNFMVDDGFDDDEPKKN 461
+PETK + I++M E VWK HW WK +M+ + D K+N
Sbjct: 466 FIPETKGIAIDDMRESVWKPHWFWKRYMLPEDDHHDIEKRN 506
|
Mediates an active uptake of hexoses, probably by sugar/hydrogen symport. Can transport glucose, 3-O-methylglucose, mannose, fructose and galactose, and, to a lower extent, xylose and ribulose. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SX48|STP9_ARATH Sugar transport protein 9 OS=Arabidopsis thaliana GN=STP9 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 534 bits (1376), Expect = e-151, Method: Compositional matrix adjust.
Identities = 257/454 (56%), Positives = 337/454 (74%), Gaps = 5/454 (1%)
Query: 1 MPHFLKKFFPVVYRRTQQGD-DSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGR 59
M FL KFFP V ++ + ++ YCK+DNQ LQLFTSSLYLA L ++F AS TR+ GR
Sbjct: 52 MEEFLSKFFPEVDKQMHEARRETAYCKFDNQLLQLFTSSLYLAALASSFVASAVTRKYGR 111
Query: 60 RLTMLIAGIFFIAGVAFNVAAQNLAMLIVGRILLGCGVGFANQAVPLFLSEIAPTRIRGG 119
+++M + G+ F+ G FN A N+AMLIVGR+LLG GVGFANQ+ P++LSE+AP +IRG
Sbjct: 112 KISMFVGGVAFLIGSLFNAFATNVAMLIVGRLLLGVGVGFANQSTPVYLSEMAPAKIRGA 171
Query: 120 LNILFQLNVTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVGSLLVTDTPNSL 179
LNI FQ+ +TIGIL ANL+NYGTS + GWR+SLGLA +PA ++ +GS ++ DTPNS+
Sbjct: 172 LNIGFQMAITIGILIANLINYGTSQMAKN-GWRVSLGLAAVPAVIMVIGSFVLPDTPNSM 230
Query: 180 IERGRFEEGKAVLRKIRGTDKIEPEFLELVEASRIAKEVKHPFRNLLKR-RNRPQLVIAV 238
+ERG++E+ + +L+KIRG D ++ EF +L +A AK+V +P++N+ ++ + RP LV
Sbjct: 231 LERGKYEQAREMLQKIRGADNVDEEFQDLCDACEAAKKVDNPWKNIFQQAKYRPALVFCS 290
Query: 239 ALQIFQQCTGINAIMFYAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRR 298
A+ FQQ TGIN IMFYAPVLFKTLGF ASL S VITGAVNV+STLVSIY+VD+ GRR
Sbjct: 291 AIPFFQQITGINVIMFYAPVLFKTLGFADDASLISAVITGAVNVVSTLVSIYAVDRYGRR 350
Query: 299 MLLLEAGIQMFLSQTVIAIILGIKV-KDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLG 357
+L LE GIQM +SQ V+ ++G+K S L A ++ IC +++ FAWSWGPLG
Sbjct: 351 ILFLEGGIQMIVSQIVVGTLIGMKFGTTGSGTLTPATADWILAFICLYVAGFAWSWGPLG 410
Query: 358 WLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHFKFGIFLFFSGWVLIMSCF 417
WL+PSE PLE R AGQ++ V VN+ FTF+I Q FL+MLCH KFG+F FF G V +M+ F
Sbjct: 411 WLVPSEICPLEIRPAGQAINVSVNMFFTFLIGQFFLTMLCHMKFGLFYFFGGMVAVMTVF 470
Query: 418 VFFLLPETKNVPIEEMTERVWKQHWLWKNFMVDD 451
++FLLPETK VPIEEM RVWKQH WK +M DD
Sbjct: 471 IYFLLPETKGVPIEEMG-RVWKQHPFWKRYMPDD 503
|
Mediates an active uptake of hexoses, probably by sugar/hydrogen symport. Mostly transports glucose, and barely galactose, xylose and mannose. Arabidopsis thaliana (taxid: 3702) |
| >sp|P23586|STP1_ARATH Sugar transport protein 1 OS=Arabidopsis thaliana GN=STP1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 532 bits (1370), Expect = e-150, Method: Compositional matrix adjust.
Identities = 266/470 (56%), Positives = 346/470 (73%), Gaps = 5/470 (1%)
Query: 1 MPHFLKKFFPVVYRRTQQGDDSN-YCKYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGR 59
MP FLK+FFP VYR+ Q+ +N YC+YD+ L +FTSSLYLA L ++ AS TR+ GR
Sbjct: 50 MPSFLKRFFPSVYRKQQEDASTNQYCQYDSPTLTMFTSSLYLAALISSLVASTVTRKFGR 109
Query: 60 RLTMLIAGIFFIAGVAFNVAAQNLAMLIVGRILLGCGVGFANQAVPLFLSEIAPTRIRGG 119
RL+ML GI F AG N A+++ MLIVGRILLG G+GFANQAVPL+LSE+AP + RG
Sbjct: 110 RLSMLFGGILFCAGALINGFAKHVWMLIVGRILLGFGIGFANQAVPLYLSEMAPYKYRGA 169
Query: 120 LNILFQLNVTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVGSLLVTDTPNSL 179
LNI FQL++TIGIL A ++NY + IK WGWR+SLG A +PA ++T+GSL++ DTPNS+
Sbjct: 170 LNIGFQLSITIGILVAEVLNYFFAKIKGGWGWRLSLGGAVVPALIITIGSLVLPDTPNSM 229
Query: 180 IERGRFEEGKAVLRKIRGTDKIEPEFLELVEASRIAKEVKHPFRNLLKRRNRPQLVIAVA 239
IERG+ EE K LR+IRG D + EF +LV AS+ ++ ++HP+RNLL+R+ RP L +AV
Sbjct: 230 IERGQHEEAKTKLRRIRGVDDVSQEFDDLVAASKESQSIEHPWRNLLRRKYRPHLTMAVM 289
Query: 240 LQIFQQCTGINAIMFYAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRM 299
+ FQQ TGIN IMFYAPVLF T+GF ASL S V+TG+VNV +TLVSIY VD+ GRR
Sbjct: 290 IPFFQQLTGINVIMFYAPVLFNTIGFTTDASLMSAVVTGSVNVAATLVSIYGVDRWGRRF 349
Query: 300 LLLEAGIQMFLSQTVIAIILGIK--VKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLG 357
L LE G QM + Q V+A +G K V +L +A++VV IC +++ FAWSWGPLG
Sbjct: 350 LFLEGGTQMLICQAVVAACIGAKFGVDGTPGELPKWYAIVVVTFICIYVAGFAWSWGPLG 409
Query: 358 WLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHFKFGIFLFFSGWVLIMSCF 417
WL+PSE FPLE RSA QS+TV VN++FTF+IAQ FL+MLCH KFG+FL F+ +V++MS F
Sbjct: 410 WLVPSEIFPLEIRSAAQSITVSVNMIFTFIIAQIFLTMLCHLKFGLFLVFAFFVVVMSIF 469
Query: 418 VFFLLPETKNVPIEEMTERVWKQHWLWKNFMVDDGFDDD-EPKKNGHRNG 466
V+ LPETK +PIEEM + VW+ HW W F+ D + + E KN ++ G
Sbjct: 470 VYIFLPETKGIPIEEMGQ-VWRSHWYWSRFVEDGEYGNALEMGKNSNQAG 518
|
Major hexose transporter. Mediates an active uptake of hexoses, by sugar/hydrogen symport. Can transport glucose, 3-O-methylglucose, fructose, xylose, mannose, galactose, fucose, 2-deoxyglucose and arabinose. Confers sensitivity to galactose in seedlings. Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 473 | ||||||
| 225432612 | 536 | PREDICTED: sugar transport protein 13 [V | 1.0 | 0.882 | 0.817 | 0.0 | |
| 255552343 | 530 | sugar transporter, putative [Ricinus com | 0.995 | 0.888 | 0.825 | 0.0 | |
| 147822729 | 536 | hypothetical protein VITISV_025413 [Viti | 1.0 | 0.882 | 0.819 | 0.0 | |
| 15240313 | 526 | sugar transport protein 13 [Arabidopsis | 0.995 | 0.895 | 0.824 | 0.0 | |
| 356541627 | 522 | PREDICTED: sugar transport protein 13-li | 0.993 | 0.900 | 0.838 | 0.0 | |
| 356497466 | 522 | PREDICTED: sugar transport protein 13-li | 0.993 | 0.900 | 0.838 | 0.0 | |
| 300119978 | 529 | putative hexose transporter [Manihot esc | 0.997 | 0.892 | 0.841 | 0.0 | |
| 357480831 | 521 | Hexose transporter [Medicago truncatula] | 0.987 | 0.896 | 0.822 | 0.0 | |
| 449433333 | 526 | PREDICTED: sugar transport protein 13-li | 1.0 | 0.899 | 0.808 | 0.0 | |
| 449520309 | 538 | PREDICTED: sugar transport protein 13-li | 0.989 | 0.869 | 0.811 | 0.0 |
| >gi|225432612|ref|XP_002281683.1| PREDICTED: sugar transport protein 13 [Vitis vinifera] gi|66016961|gb|AAT09979.1| hexose transporter [Vitis vinifera] gi|297737025|emb|CBI26226.3| unnamed protein product [Vitis vinifera] gi|310877796|gb|ADP37129.1| hexose transporter [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 816 bits (2109), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 398/487 (81%), Positives = 433/487 (88%), Gaps = 14/487 (2%)
Query: 1 MPHFLKKFFPVVYRRTQQGDDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRR 60
M FLKKFFPVVYR+ + +SNYCKYDNQGLQLFTSSLYLAGLT+TFFASYTTR GR+
Sbjct: 50 MDPFLKKFFPVVYRKQHEELESNYCKYDNQGLQLFTSSLYLAGLTSTFFASYTTRSFGRK 109
Query: 61 LTMLIAGIFFIAGVAFNVAAQNLAMLIVGRILLGCGVGFANQAVPLFLSEIAPTRIRGGL 120
TMLIAGIFFI GV N AAQ+LAMLI+GRILLGCGVGFANQAVPLFLSEIAPTRIRGGL
Sbjct: 110 ATMLIAGIFFIVGVVLNTAAQDLAMLIIGRILLGCGVGFANQAVPLFLSEIAPTRIRGGL 169
Query: 121 NILFQLNVTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVGSLLVTDTPNSLI 180
NILFQLNVTIGILFANLVNYGT+ IK WGWR+SLGLAGIPA LLTVGSLLV DTPNSLI
Sbjct: 170 NILFQLNVTIGILFANLVNYGTAKIKGGWGWRVSLGLAGIPAVLLTVGSLLVVDTPNSLI 229
Query: 181 ERGRFEEGKAVLRKIRGTDKIEPEFLELVEASRIAKEVKHPFRNLLKRRNRPQLVIAVAL 240
ERGR EEGKAVLRKIRGTDKIEPE+ EL+EASR+AK VKHPFRNL++RRNRPQL+IAVAL
Sbjct: 230 ERGRLEEGKAVLRKIRGTDKIEPEYQELLEASRVAKLVKHPFRNLMQRRNRPQLIIAVAL 289
Query: 241 QIFQQCTGINAIMFYAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRML 300
QIFQQ TGINAIMFYAPVLF TLGFG ASLYS VITGAVNVLSTLVS+YSVDKVGRR+L
Sbjct: 290 QIFQQFTGINAIMFYAPVLFDTLGFGSDASLYSAVITGAVNVLSTLVSVYSVDKVGRRLL 349
Query: 301 LLEAGIQMFLSQTVIAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLI 360
LLEAG+QMF SQ VIAIILGIKVKDHS +LHTG+AVLVV+++CTF++ FAWSWGPLGWLI
Sbjct: 350 LLEAGVQMFFSQVVIAIILGIKVKDHSNNLHTGYAVLVVVLVCTFVAGFAWSWGPLGWLI 409
Query: 361 PSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHFKFGIFLFFSGWVLIMSCFVFF 420
PSETFPLETRSAGQSVTVCVNLLFTFVIAQ+FLSMLCH K+GIFLFFSGWV IMS FV F
Sbjct: 410 PSETFPLETRSAGQSVTVCVNLLFTFVIAQSFLSMLCHLKYGIFLFFSGWVFIMSFFVLF 469
Query: 421 LLPETKNVPIEEMTERVWKQHWLWKNFMVDD-------GFDDDE-------PKKNGHRNG 466
LLPETKN+PIEEMTERVWK+HWLWK FM D G++D+E K++G+ NG
Sbjct: 470 LLPETKNIPIEEMTERVWKKHWLWKRFMDDHVEGFPVFGYNDEETVVNGSDKKRDGYGNG 529
Query: 467 FDPVSQL 473
FDP SQL
Sbjct: 530 FDPSSQL 536
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255552343|ref|XP_002517216.1| sugar transporter, putative [Ricinus communis] gi|223543851|gb|EEF45379.1| sugar transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 815 bits (2106), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 398/482 (82%), Positives = 432/482 (89%), Gaps = 11/482 (2%)
Query: 1 MPHFLKKFFPVVYRRTQQGD-DSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGR 59
MP FLKKFFP VY +T +SNYCKYDNQGLQLFTSSLYLAGL ATFFASYTTR+LGR
Sbjct: 51 MPDFLKKFFPTVYYKTNDPTINSNYCKYDNQGLQLFTSSLYLAGLVATFFASYTTRKLGR 110
Query: 60 RLTMLIAGIFFIAGVAFNVAAQNLAMLIVGRILLGCGVGFANQAVPLFLSEIAPTRIRGG 119
R TMLIAG+FFI GV N AAQ+LAMLI+GR+LLGCGVGFANQAVPLFLSEIAPTRIRGG
Sbjct: 111 RPTMLIAGLFFIVGVVLNAAAQDLAMLIIGRVLLGCGVGFANQAVPLFLSEIAPTRIRGG 170
Query: 120 LNILFQLNVTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVGSLLVTDTPNSL 179
LNILFQLNVTIGILFA+LVNYGT+ I WGWR+SLGLAGIPA LLTVG+LLV++TPNSL
Sbjct: 171 LNILFQLNVTIGILFASLVNYGTAKITDGWGWRLSLGLAGIPALLLTVGALLVSETPNSL 230
Query: 180 IERGRFEEGKAVLRKIRGTDKIEPEFLELVEASRIAKEVKHPFRNLLKRRNRPQLVIAVA 239
IERGR +EGKAVLR+IRGTDKIEPEFLELVEASR AK VKHPFRNL+KRRNRPQLVIAVA
Sbjct: 231 IERGRLDEGKAVLRRIRGTDKIEPEFLELVEASRAAKAVKHPFRNLMKRRNRPQLVIAVA 290
Query: 240 LQIFQQCTGINAIMFYAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRM 299
LQIFQQ TGINAIMFYAPVLF T+GFG A+LYS VITGAVNV+ST+VSIYSVDK+GRR+
Sbjct: 291 LQIFQQFTGINAIMFYAPVLFDTVGFGSDAALYSAVITGAVNVVSTVVSIYSVDKLGRRV 350
Query: 300 LLLEAGIQMFLSQTVIAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWL 359
LLLEAGIQMF+SQ +IAIILGIKV DHS+DL FA++VV+M+C F+SAFAWSWGPLGWL
Sbjct: 351 LLLEAGIQMFISQVIIAIILGIKVTDHSDDLSKAFAIIVVVMVCGFVSAFAWSWGPLGWL 410
Query: 360 IPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHFKFGIFLFFSGWVLIMSCFVF 419
IPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHFKFGIFLFFSGWVLIMS FVF
Sbjct: 411 IPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHFKFGIFLFFSGWVLIMSFFVF 470
Query: 420 FLLPETKNVPIEEMTERVWKQHWLWKNFMVDDGFDD--------DEPKKNGHRNGFDPVS 471
FLLPETKNVPIEEMTERVWKQHW WK FM D ++D KKNGH+NGFDPV+
Sbjct: 471 FLLPETKNVPIEEMTERVWKQHWFWKRFM--DDYEDGAIEMNGQKASKKNGHKNGFDPVT 528
Query: 472 QL 473
QL
Sbjct: 529 QL 530
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147822729|emb|CAN61766.1| hypothetical protein VITISV_025413 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 814 bits (2103), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 399/487 (81%), Positives = 431/487 (88%), Gaps = 14/487 (2%)
Query: 1 MPHFLKKFFPVVYRRTQQGDDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRR 60
M FLKKFFPVVYR+ + SNYCKYDNQGLQLFTSSLYLAGLT+TFFASYTTR GR+
Sbjct: 50 MDPFLKKFFPVVYRKXHEXLXSNYCKYDNQGLQLFTSSLYLAGLTSTFFASYTTRSFGRK 109
Query: 61 LTMLIAGIFFIAGVAFNVAAQNLAMLIVGRILLGCGVGFANQAVPLFLSEIAPTRIRGGL 120
TMLIAGIFFI GV N AAQ+LAMLIVGRILLGCGVGFANQAVPLFLSEIAPTRIRGGL
Sbjct: 110 ATMLIAGIFFIVGVVLNTAAQDLAMLIVGRILLGCGVGFANQAVPLFLSEIAPTRIRGGL 169
Query: 121 NILFQLNVTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVGSLLVTDTPNSLI 180
NILFQLNVTIGILFANLVNYGT+ IK WGWR+SLGLAGIPA LLTVGSLLV DTPNSLI
Sbjct: 170 NILFQLNVTIGILFANLVNYGTAKIKGGWGWRVSLGLAGIPAVLLTVGSLLVVDTPNSLI 229
Query: 181 ERGRFEEGKAVLRKIRGTDKIEPEFLELVEASRIAKEVKHPFRNLLKRRNRPQLVIAVAL 240
ERGR EEGKAVLRKIRGTDKIEPE+ EL+EASR+AK VKHPFRNL++RRNRPQL+IAVAL
Sbjct: 230 ERGRLEEGKAVLRKIRGTDKIEPEYQELLEASRVAKLVKHPFRNLMQRRNRPQLIIAVAL 289
Query: 241 QIFQQCTGINAIMFYAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRML 300
QIFQQ TGINAIMFYAPVLF TLGFG ASLYS VITGAVNVLSTLVS+YSVDKVGRR+L
Sbjct: 290 QIFQQFTGINAIMFYAPVLFDTLGFGSDASLYSAVITGAVNVLSTLVSVYSVDKVGRRLL 349
Query: 301 LLEAGIQMFLSQTVIAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLI 360
LLEAG+QMF SQ VIAIILGIKVKDHS +LHTG+AVLVV+++CTF++ FAWSWGPLGWLI
Sbjct: 350 LLEAGVQMFFSQVVIAIILGIKVKDHSNNLHTGYAVLVVVLVCTFVAGFAWSWGPLGWLI 409
Query: 361 PSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHFKFGIFLFFSGWVLIMSCFVFF 420
PSETFPLETRSAGQSVTVCVNLLFTFVIAQ+FLSMLCH K+GIFLFFSGWV IMS FV F
Sbjct: 410 PSETFPLETRSAGQSVTVCVNLLFTFVIAQSFLSMLCHLKYGIFLFFSGWVFIMSFFVLF 469
Query: 421 LLPETKNVPIEEMTERVWKQHWLWKNFMVDD-------GFDDDE-------PKKNGHRNG 466
LLPETKN+PIEEMTERVWK+HWLWK FM D G++D E K++G+ NG
Sbjct: 470 LLPETKNIPIEEMTERVWKKHWLWKRFMDDHVEGXPVFGYNDXETVVNGSDKKRDGYGNG 529
Query: 467 FDPVSQL 473
FDP SQL
Sbjct: 530 FDPSSQL 536
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15240313|ref|NP_198006.1| sugar transport protein 13 [Arabidopsis thaliana] gi|85701281|sp|Q94AZ2.2|STP13_ARATH RecName: Full=Sugar transport protein 13; AltName: Full=Hexose transporter 13; AltName: Full=Multicopy suppressor of snf4 deficiency protein 1 gi|9965739|gb|AAG10146.1|AF250340_1 putative hexose transporter MSS1 [Arabidopsis thaliana] gi|3319354|gb|AAC26243.1| contains similarity to sugar transporters (Pfam: sugar_tr.hmm, score: 395.39) [Arabidopsis thaliana] gi|15450649|gb|AAK96596.1| AT5g26340/F9D12_17 [Arabidopsis thaliana] gi|15487258|emb|CAC69074.1| STP13 protein [Arabidopsis thaliana] gi|332006170|gb|AED93553.1| sugar transport protein 13 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 812 bits (2098), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 395/479 (82%), Positives = 428/479 (89%), Gaps = 8/479 (1%)
Query: 1 MPHFLKKFFPVVYRRTQQG--DDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRRLG 58
MP FL+KFFPVVYR+ G DSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTR LG
Sbjct: 50 MPDFLEKFFPVVYRKVVAGADKDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRTLG 109
Query: 59 RRLTMLIAGIFFIAGVAFNVAAQNLAMLIVGRILLGCGVGFANQAVPLFLSEIAPTRIRG 118
RRLTMLIAG+FFI GVA N AQ+LAMLI GRILLGCGVGFANQAVPLFLSEIAPTRIRG
Sbjct: 110 RRLTMLIAGVFFIIGVALNAGAQDLAMLIAGRILLGCGVGFANQAVPLFLSEIAPTRIRG 169
Query: 119 GLNILFQLNVTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVGSLLVTDTPNS 178
GLNILFQLNVTIGILFANLVNYGT+ IK WGWR+SLGLAGIPA LLTVG+LLVT+TPNS
Sbjct: 170 GLNILFQLNVTIGILFANLVNYGTAKIKGGWGWRLSLGLAGIPALLLTVGALLVTETPNS 229
Query: 179 LIERGRFEEGKAVLRKIRGTDKIEPEFLELVEASRIAKEVKHPFRNLLKRRNRPQLVIAV 238
L+ERGR +EGKAVLR+IRGTD +EPEF +L+EASR+AKEVKHPFRNLL+RRNRPQLVIAV
Sbjct: 230 LVERGRLDEGKAVLRRIRGTDNVEPEFADLLEASRLAKEVKHPFRNLLQRRNRPQLVIAV 289
Query: 239 ALQIFQQCTGINAIMFYAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRR 298
ALQIFQQCTGINAIMFYAPVLF TLGFG ASLYS V+TGAVNVLSTLVSIYSVDKVGRR
Sbjct: 290 ALQIFQQCTGINAIMFYAPVLFSTLGFGSDASLYSAVVTGAVNVLSTLVSIYSVDKVGRR 349
Query: 299 MLLLEAGIQMFLSQTVIAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGW 358
+LLLEAG+QMF SQ VIAIILG+KV D S +L GFA+LVV+MICT+++AFAWSWGPLGW
Sbjct: 350 VLLLEAGVQMFFSQVVIAIILGVKVTDTSTNLSKGFAILVVVMICTYVAAFAWSWGPLGW 409
Query: 359 LIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHFKFGIFLFFSGWVLIMSCFV 418
LIPSETFPLETRSAGQSVTVCVNLLFTF+IAQAFLSMLCHFKFGIF+FFS WVLIMS FV
Sbjct: 410 LIPSETFPLETRSAGQSVTVCVNLLFTFIIAQAFLSMLCHFKFGIFIFFSAWVLIMSVFV 469
Query: 419 FFLLPETKNVPIEEMTERVWKQHWLWKNFMVDDGFDDDE----PKKNGHRNGFDPVSQL 473
FLLPETKN+PIEEMTERVWK+HW W FM D +D E K NG NGFDP ++L
Sbjct: 470 MFLLPETKNIPIEEMTERVWKKHWFWARFM--DDHNDHEFVNGEKSNGKSNGFDPSTRL 526
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356541627|ref|XP_003539275.1| PREDICTED: sugar transport protein 13-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 810 bits (2093), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 399/476 (83%), Positives = 427/476 (89%), Gaps = 6/476 (1%)
Query: 1 MPHFLKKFFPVVYRRT--QQGDDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRRLG 58
MP FLKKFFP VYR+T ++G DSNYCKYDNQGLQLFTSSLYLAGLT+TFFASYTTRRLG
Sbjct: 50 MPPFLKKFFPTVYRKTVEEKGLDSNYCKYDNQGLQLFTSSLYLAGLTSTFFASYTTRRLG 109
Query: 59 RRLTMLIAGIFFIAGVAFNVAAQNLAMLIVGRILLGCGVGFANQAVPLFLSEIAPTRIRG 118
RRLTMLIAG FFI GV N AAQ+LAMLIVGRILLGCGVGFANQAVP+FLSEIAP+RIRG
Sbjct: 110 RRLTMLIAGFFFIGGVVLNAAAQDLAMLIVGRILLGCGVGFANQAVPVFLSEIAPSRIRG 169
Query: 119 GLNILFQLNVTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVGSLLVTDTPNS 178
LNILFQLNVTIGILFANLVNYGT+ IK WGWR+SLGLAGIPA LLT+G+L V DTPNS
Sbjct: 170 ALNILFQLNVTIGILFANLVNYGTNKIKGGWGWRLSLGLAGIPAVLLTLGALFVVDTPNS 229
Query: 179 LIERGRFEEGKAVLRKIRGTDKIEPEFLELVEASRIAKEVKHPFRNLLKRRNRPQLVIAV 238
LIERGR EEGK VL+KIRGTD IE EF ELVEASR+AKEVKHPFRNLLKRRNRPQLVI++
Sbjct: 230 LIERGRLEEGKTVLKKIRGTDNIELEFQELVEASRVAKEVKHPFRNLLKRRNRPQLVISI 289
Query: 239 ALQIFQQCTGINAIMFYAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRR 298
ALQIFQQ TGINAIMFYAPVLF TLGF ASLYS VITGAVNVLST+VSIYSVDK+GRR
Sbjct: 290 ALQIFQQFTGINAIMFYAPVLFNTLGFKNDASLYSAVITGAVNVLSTVVSIYSVDKLGRR 349
Query: 299 MLLLEAGIQMFLSQTVIAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGW 358
MLLLEAG+QMFLSQ VIAIILGIKV DHS+DL G A+LVV+M+CTF+S+FAWSWGPLGW
Sbjct: 350 MLLLEAGVQMFLSQVVIAIILGIKVTDHSDDLSKGIAILVVVMVCTFVSSFAWSWGPLGW 409
Query: 359 LIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHFKFGIFLFFSGWVLIMSCFV 418
LIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHFKFGIFLFFSGWVL+MS FV
Sbjct: 410 LIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHFKFGIFLFFSGWVLVMSVFV 469
Query: 419 FFLLPETKNVPIEEMTERVWKQHWLWKNFMVDDGFDDDEPK-KNGHRNGFDPVSQL 473
FLLPETKNVPIEEMTERVWKQHW WK F +DD D+ NG NGFDP S+L
Sbjct: 470 LFLLPETKNVPIEEMTERVWKQHWFWKRF-IDDAADEKVANVSNG--NGFDPTSRL 522
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356497466|ref|XP_003517581.1| PREDICTED: sugar transport protein 13-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 810 bits (2091), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 399/476 (83%), Positives = 428/476 (89%), Gaps = 6/476 (1%)
Query: 1 MPHFLKKFFPVVYRRT--QQGDDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRRLG 58
MP FLKKFFP VYR+T ++G DSNYCKYDNQGLQLFTSSLYLAGLT+TFFASYTTRRLG
Sbjct: 50 MPPFLKKFFPTVYRKTVEEKGLDSNYCKYDNQGLQLFTSSLYLAGLTSTFFASYTTRRLG 109
Query: 59 RRLTMLIAGIFFIAGVAFNVAAQNLAMLIVGRILLGCGVGFANQAVPLFLSEIAPTRIRG 118
RRLTMLIAG+FFI GV N AAQ+LAMLIVGRILLGCGVGFANQAVP+FLSEIAP+RIRG
Sbjct: 110 RRLTMLIAGVFFICGVVLNAAAQDLAMLIVGRILLGCGVGFANQAVPVFLSEIAPSRIRG 169
Query: 119 GLNILFQLNVTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVGSLLVTDTPNS 178
LNILFQLNVTIGILFANLVNYGT+ IK WGWR+SLGLAGIPA LLT+G+L V DTPNS
Sbjct: 170 ALNILFQLNVTIGILFANLVNYGTNKIKGGWGWRLSLGLAGIPAVLLTLGALFVVDTPNS 229
Query: 179 LIERGRFEEGKAVLRKIRGTDKIEPEFLELVEASRIAKEVKHPFRNLLKRRNRPQLVIAV 238
LIERGR EEGK VL+KIRGTD IE EF EL+EASR+AKEVKHPFRNLLKRRNRPQLVI+V
Sbjct: 230 LIERGRLEEGKTVLKKIRGTDNIELEFQELLEASRVAKEVKHPFRNLLKRRNRPQLVISV 289
Query: 239 ALQIFQQCTGINAIMFYAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRR 298
ALQIFQQ TGINAIMFYAPVLF TLGF ASLYS VITGAVNVLST+VSIYSVDKVGRR
Sbjct: 290 ALQIFQQFTGINAIMFYAPVLFNTLGFKNDASLYSAVITGAVNVLSTVVSIYSVDKVGRR 349
Query: 299 MLLLEAGIQMFLSQTVIAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGW 358
+LLLEAG+QMFLSQ VIAIILGIKV DHS+DL G A+LVV+M+CTF+S+FAWSWGPLGW
Sbjct: 350 ILLLEAGVQMFLSQVVIAIILGIKVTDHSDDLSKGIAILVVVMVCTFVSSFAWSWGPLGW 409
Query: 359 LIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHFKFGIFLFFSGWVLIMSCFV 418
LIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHFKFGIFLFFSGWVL+MS FV
Sbjct: 410 LIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHFKFGIFLFFSGWVLVMSVFV 469
Query: 419 FFLLPETKNVPIEEMTERVWKQHWLWKNFMVDDGFDDDEPK-KNGHRNGFDPVSQL 473
FLLPETKNVPIEEMTERVWKQHW WK F +DD D+ NG NGFDP S+L
Sbjct: 470 LFLLPETKNVPIEEMTERVWKQHWFWKRF-IDDAADEKVAHVSNG--NGFDPTSRL 522
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|300119978|gb|ADJ68005.1| putative hexose transporter [Manihot esculenta] gi|300119980|gb|ADJ68006.1| putative hexose transporter 2 [Manihot esculenta] | Back alignment and taxonomy information |
|---|
Score = 803 bits (2073), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 402/478 (84%), Positives = 432/478 (90%), Gaps = 6/478 (1%)
Query: 1 MPHFLKKFFPVVYRRTQQGD-DSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGR 59
MP FLKKFFP VY +TQ +SNYCKY NQGLQLFTSSLYLAGL ATFFASYTTR+LGR
Sbjct: 51 MPDFLKKFFPTVYDKTQDPTINSNYCKYANQGLQLFTSSLYLAGLVATFFASYTTRKLGR 110
Query: 60 RLTMLIAGIFFIAGVAFNVAAQNLAMLIVGRILLGCGVGFANQAVPLFLSEIAPTRIRGG 119
R TMLIAGIFFI GV N AAQ+LAMLI+GRILLGCGVGFANQAVPLFLSEIAPTRIRGG
Sbjct: 111 RPTMLIAGIFFIIGVVLNTAAQDLAMLIIGRILLGCGVGFANQAVPLFLSEIAPTRIRGG 170
Query: 120 LNILFQLNVTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVGSLLVTDTPNSL 179
LNILFQLNVTIGI+FANLVNYGT+ IKS WGWR+SLGLAGIPA LLT GSLLV++TPNSL
Sbjct: 171 LNILFQLNVTIGIVFANLVNYGTAKIKSGWGWRLSLGLAGIPALLLTFGSLLVSETPNSL 230
Query: 180 IERGRFEEGKAVLRKIRGTDKIEPEFLELVEASRIAKEVKHPFRNLLKRRNRPQLVIAVA 239
IERGR EEGKA+LRKIRGTDKIEPEFLELVEASRIAKEVKHPFRNL+KRRNRPQLVI+VA
Sbjct: 231 IERGRLEEGKAILRKIRGTDKIEPEFLELVEASRIAKEVKHPFRNLMKRRNRPQLVISVA 290
Query: 240 LQIFQQCTGINAIMFYAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRM 299
LQIFQQ TGINAIMFYAPVLF TLGFG ASLYS VITGAVNV+ST+VSIYSVD+VGRR+
Sbjct: 291 LQIFQQLTGINAIMFYAPVLFDTLGFGSDASLYSAVITGAVNVISTVVSIYSVDRVGRRV 350
Query: 300 LLLEAGIQMFLSQTVIAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWL 359
LLLEAG+QMF+SQ +IAIILGIKVKDHSEDLH G AVLVVIMICTF+S FAWSWGPLGWL
Sbjct: 351 LLLEAGVQMFVSQVIIAIILGIKVKDHSEDLHRGIAVLVVIMICTFVSGFAWSWGPLGWL 410
Query: 360 IPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHFKFGIFLFFSGWVLIMSCFVF 419
IPSETFPLETRSAGQSVTVCVNLLFTF IAQAFLSMLCHFK+GIFLFFS WV +MS FVF
Sbjct: 411 IPSETFPLETRSAGQSVTVCVNLLFTFAIAQAFLSMLCHFKYGIFLFFSSWVFVMSFFVF 470
Query: 420 FLLPETKNVPIEEMTERVWKQHWLWKNFMVDD-----GFDDDEPKKNGHRNGFDPVSQ 472
FL+PETKN+PIEEMTERVWKQHWLWK FM D+ + + +K GH NGFDPV+Q
Sbjct: 471 FLVPETKNIPIEEMTERVWKQHWLWKRFMDDNEEGAIEINGQKSQKKGHANGFDPVTQ 528
|
Source: Manihot esculenta Species: Manihot esculenta Genus: Manihot Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357480831|ref|XP_003610701.1| Hexose transporter [Medicago truncatula] gi|355512036|gb|AES93659.1| Hexose transporter [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 798 bits (2062), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 394/479 (82%), Positives = 426/479 (88%), Gaps = 12/479 (2%)
Query: 1 MPHFLKKFFPVVYRRT--QQGDDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRRLG 58
M FLKKFFP VYR+T + G DSNYCKYDNQGLQLFTSSLYLA LT+TFFASYTTR +G
Sbjct: 49 MHPFLKKFFPAVYRKTVLEAGLDSNYCKYDNQGLQLFTSSLYLAALTSTFFASYTTRTMG 108
Query: 59 RRLTMLIAGIFFIAGVAFNVAAQNLAMLIVGRILLGCGVGFANQAVPLFLSEIAPTRIRG 118
RRLTMLIAG FFIAGVAFN AAQNLAMLIVGRILLGCGVGFANQAVP+FLSEIAP+RIRG
Sbjct: 109 RRLTMLIAGFFFIAGVAFNAAAQNLAMLIVGRILLGCGVGFANQAVPVFLSEIAPSRIRG 168
Query: 119 GLNILFQLNVTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVGSLLVTDTPNS 178
LNILFQLNVTIGILFANLVNYGT+ I WGWR+SLGLAGIPA LLTVG+++V DTPNS
Sbjct: 169 ALNILFQLNVTIGILFANLVNYGTNKISGGWGWRLSLGLAGIPALLLTVGAIVVVDTPNS 228
Query: 179 LIERGRFEEGKAVLRKIRGTDKIEPEFLELVEASRIAKEVKHPFRNLLKRRNRPQLVIAV 238
LIERGR EEGKAVL+KIRGTD IEPEFLEL EASR+AKEVKHPFRNLLKR+NRPQL+I++
Sbjct: 229 LIERGRLEEGKAVLKKIRGTDNIEPEFLELCEASRVAKEVKHPFRNLLKRKNRPQLIISI 288
Query: 239 ALQIFQQCTGINAIMFYAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRR 298
ALQIFQQ TGINAIMFYAPVLF T+GF ASLYS VITGAVNVLST+VSIY VDK+GRR
Sbjct: 289 ALQIFQQFTGINAIMFYAPVLFNTVGFKNDASLYSAVITGAVNVLSTIVSIYFVDKLGRR 348
Query: 299 MLLLEAGIQMFLSQTVIAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGW 358
MLLLEAG+QMFLSQ VIAIILGIKV DHS+DL G+A+ VVI++CTF+SAFAWSWGPLGW
Sbjct: 349 MLLLEAGVQMFLSQIVIAIILGIKVTDHSDDLSKGYAIFVVILVCTFVSAFAWSWGPLGW 408
Query: 359 LIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHFKFGIFLFFSGWVLIMSCFV 418
LIPSETFPLETRSAGQSVTVCVN+LFTFVIAQAFLSMLCHFKFGIFLFFSGWVLIMS FV
Sbjct: 409 LIPSETFPLETRSAGQSVTVCVNMLFTFVIAQAFLSMLCHFKFGIFLFFSGWVLIMSIFV 468
Query: 419 FFLLPETKNVPIEEMTERVWKQHWLWKNFMVDDG---FDDDEPK-KNGHRNGFDPVSQL 473
FL+PETKN+PIEEMTERVWKQHW WK FM DD + D PK KN +P SQL
Sbjct: 469 LFLVPETKNIPIEEMTERVWKQHWFWKRFMEDDNEKVSNADYPKIKN------NPNSQL 521
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449433333|ref|XP_004134452.1| PREDICTED: sugar transport protein 13-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 798 bits (2062), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 384/475 (80%), Positives = 422/475 (88%), Gaps = 2/475 (0%)
Query: 1 MPHFLKKFFPVVYRRTQ--QGDDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRRLG 58
MP FLKKFFPVVYR+TQ + DSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTR+LG
Sbjct: 52 MPDFLKKFFPVVYRKTQLKEESDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRKLG 111
Query: 59 RRLTMLIAGIFFIAGVAFNVAAQNLAMLIVGRILLGCGVGFANQAVPLFLSEIAPTRIRG 118
R+LTMLIAG+FFI G N A+NL MLIVGRI LGCGVGFANQAVPLFLSEIAPTRIRG
Sbjct: 112 RKLTMLIAGVFFIIGTVLNTTAENLMMLIVGRISLGCGVGFANQAVPLFLSEIAPTRIRG 171
Query: 119 GLNILFQLNVTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVGSLLVTDTPNS 178
GLNILFQLNVTIGILFANLVNY T+ I+ WGWR+SLGLAGIPA LLT+G+L+V DTPNS
Sbjct: 172 GLNILFQLNVTIGILFANLVNYFTAKIEGGWGWRLSLGLAGIPAGLLTLGALMVVDTPNS 231
Query: 179 LIERGRFEEGKAVLRKIRGTDKIEPEFLELVEASRIAKEVKHPFRNLLKRRNRPQLVIAV 238
LIERGR EEGKAVL+KIRGTD +E EFLELVEASR+A+E+KHPFRNLLKRRNRPQL+IAV
Sbjct: 232 LIERGRMEEGKAVLKKIRGTDNVEAEFLELVEASRVAREIKHPFRNLLKRRNRPQLIIAV 291
Query: 239 ALQIFQQCTGINAIMFYAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRR 298
ALQIFQQ TGINAIMFYAPVLF TLGF SASLYS VITGAVNV ST++SIYSVDKVGRR
Sbjct: 292 ALQIFQQFTGINAIMFYAPVLFNTLGFKSSASLYSAVITGAVNVASTVISIYSVDKVGRR 351
Query: 299 MLLLEAGIQMFLSQTVIAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGW 358
MLLLEAG+QMF+SQ +IAI+LGIKV DHS++L FA LVV+M+CTF+S+FAWSWGPLGW
Sbjct: 352 MLLLEAGVQMFISQLMIAIVLGIKVNDHSDNLTKSFATLVVVMVCTFVSSFAWSWGPLGW 411
Query: 359 LIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHFKFGIFLFFSGWVLIMSCFV 418
LIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCH KFGIFLFFS WVLIMS FV
Sbjct: 412 LIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHLKFGIFLFFSSWVLIMSVFV 471
Query: 419 FFLLPETKNVPIEEMTERVWKQHWLWKNFMVDDGFDDDEPKKNGHRNGFDPVSQL 473
FLLPETKNVPIEEMTE+VWK+HW WK F+ +D + + H NGF+P +L
Sbjct: 472 LFLLPETKNVPIEEMTEQVWKRHWFWKRFVEEDEIEGQKRSVKKHSNGFEPSLEL 526
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449520309|ref|XP_004167176.1| PREDICTED: sugar transport protein 13-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 797 bits (2059), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 384/473 (81%), Positives = 427/473 (90%), Gaps = 5/473 (1%)
Query: 1 MPHFLKKFFPVVYRRTQQGDDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRR 60
MP FLKKFFPVV+RR ++G DSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRR
Sbjct: 51 MPSFLKKFFPVVHRRIEEGGDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRR 110
Query: 61 LTMLIAGIFFIAGVAFNVAAQNLAMLIVGRILLGCGVGFANQAVPLFLSEIAPTRIRGGL 120
TMLIAGIFFI G A N AAQN+ MLI+GRILLGCGVGFANQAVPLFLSEIAPTRIRGGL
Sbjct: 111 PTMLIAGIFFILGTALNAAAQNIEMLIIGRILLGCGVGFANQAVPLFLSEIAPTRIRGGL 170
Query: 121 NILFQLNVTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVGSLLVTDTPNSLI 180
NILFQLNVTIGILFA+L+NYGT+ IK WGWR+SLGLAG+PA LLT+G+LLV +TPNSLI
Sbjct: 171 NILFQLNVTIGILFASLINYGTAKIKDGWGWRLSLGLAGVPAGLLTIGALLVVETPNSLI 230
Query: 181 ERGRFEEGKAVLRKIRGTDKIEPEFLELVEASRIAKEVKHPFRNLLKRRNRPQLVIAVAL 240
ERGR EEGKA+LR+IRGT+ +EPEFLELVEASRIAKEVKHPFRNLLKRRN+PQL+IAVAL
Sbjct: 231 ERGRLEEGKAILRRIRGTENVEPEFLELVEASRIAKEVKHPFRNLLKRRNQPQLIIAVAL 290
Query: 241 QIFQQCTGINAIMFYAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRML 300
Q+FQQ TGINAIMFYAPVLF TLGF A+LYS VITGAVNV+ST+VSIYSVDK+GRR+L
Sbjct: 291 QVFQQLTGINAIMFYAPVLFNTLGFKNDAALYSAVITGAVNVVSTVVSIYSVDKLGRRIL 350
Query: 301 LLEAGIQMFLSQTVIAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLI 360
LLEAG+QMF+SQ VIA+ILGIKVKD + +LH A++VV+M+CTF+S+FAWSWGPLGWLI
Sbjct: 351 LLEAGVQMFISQVVIAVILGIKVKDDTNNLHNALAIVVVVMVCTFVSSFAWSWGPLGWLI 410
Query: 361 PSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHFKFGIFLFFSGWVLIMSCFVFF 420
PSETFPLETRSAGQS+TVCVNLLFTF IAQAFLSMLCHFKFGIFLFFSGWVL+MS FV F
Sbjct: 411 PSETFPLETRSAGQSITVCVNLLFTFAIAQAFLSMLCHFKFGIFLFFSGWVLVMSVFVLF 470
Query: 421 LLPETKNVPIEEMTERVWKQHWLWKNFMVDDGFDDDEPKKNGHRNGFDPVSQL 473
LLPETKN+PIEEMTERVWKQHWLWK FM DD++ +N HR + V L
Sbjct: 471 LLPETKNIPIEEMTERVWKQHWLWKRFM-----DDNDEGQNHHRYAKETVKPL 518
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 473 | ||||||
| TAIR|locus:2151074 | 526 | MSS1 "AT5G26340" [Arabidopsis | 0.997 | 0.897 | 0.805 | 4.2e-205 | |
| TAIR|locus:2132213 | 513 | STP7 "sugar transporter protei | 0.964 | 0.888 | 0.596 | 2e-150 | |
| TAIR|locus:2083003 | 507 | STP6 "sugar transporter 6" [Ar | 0.970 | 0.905 | 0.579 | 6.3e-140 | |
| TAIR|locus:2179734 | 507 | AT5G26250 [Arabidopsis thalian | 0.966 | 0.901 | 0.581 | 1.7e-139 | |
| TAIR|locus:2195995 | 504 | STP14 "sugar transport protein | 0.945 | 0.886 | 0.573 | 9.5e-137 | |
| TAIR|locus:2202044 | 522 | STP1 "AT1G11260" [Arabidopsis | 0.983 | 0.890 | 0.548 | 8.5e-136 | |
| TAIR|locus:2092221 | 514 | AT3G19940 [Arabidopsis thalian | 0.959 | 0.883 | 0.545 | 2.3e-135 | |
| TAIR|locus:2011957 | 517 | STP9 "sugar transporter 9" [Ar | 0.949 | 0.868 | 0.555 | 5.4e-134 | |
| TAIR|locus:2166781 | 514 | STP11 "sugar transporter 11" [ | 0.964 | 0.887 | 0.561 | 3.8e-133 | |
| TAIR|locus:2092286 | 514 | STP4 "sugar transporter 4" [Ar | 0.951 | 0.875 | 0.515 | 3.2e-129 |
| TAIR|locus:2151074 MSS1 "AT5G26340" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1984 (703.5 bits), Expect = 4.2e-205, P = 4.2e-205
Identities = 385/478 (80%), Positives = 418/478 (87%)
Query: 1 MPHFLKKFFPVVYRRTQQG-D-DSNYCKYDNQGLQLFTSSLYLAGLTATFFASYXXXXXX 58
MP FL+KFFPVVYR+ G D DSNYCKYDNQGLQLFTSSLYLAGLTATFFASY
Sbjct: 50 MPDFLEKFFPVVYRKVVAGADKDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRTLG 109
Query: 59 XXXXXXIAGIFFIAGVAFNVAAQNLAMLIVGRILLGCGVGFANQAVPLFLSEIAPTRIRG 118
IAG+FFI GVA N AQ+LAMLI GRILLGCGVGFANQAVPLFLSEIAPTRIRG
Sbjct: 110 RRLTMLIAGVFFIIGVALNAGAQDLAMLIAGRILLGCGVGFANQAVPLFLSEIAPTRIRG 169
Query: 119 GLNILFQLNVTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVGSLLVTDTPNS 178
GLNILFQLNVTIGILFANLVNYGT+ IK WGWR+SLGLAGIPA LLTVG+LLVT+TPNS
Sbjct: 170 GLNILFQLNVTIGILFANLVNYGTAKIKGGWGWRLSLGLAGIPALLLTVGALLVTETPNS 229
Query: 179 LIERGRFEEGKAVLRKIRGTDKIEPEFLELVEASRIAKEVKHPFRNLLKRRNRPQLVIAV 238
L+ERGR +EGKAVLR+IRGTD +EPEF +L+EASR+AKEVKHPFRNLL+RRNRPQLVIAV
Sbjct: 230 LVERGRLDEGKAVLRRIRGTDNVEPEFADLLEASRLAKEVKHPFRNLLQRRNRPQLVIAV 289
Query: 239 ALQIFQQCTGINAIMFYAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRR 298
ALQIFQQCTGINAIMFYAPVLF TLGFG ASLYS V+TGAVNVLSTLVSIYSVDKVGRR
Sbjct: 290 ALQIFQQCTGINAIMFYAPVLFSTLGFGSDASLYSAVVTGAVNVLSTLVSIYSVDKVGRR 349
Query: 299 MLLLEAGIQMFLSQTVIAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGW 358
+LLLEAG+QMF SQ VIAIILG+KV D S +L GFA+LVV+MICT+++AFAWSWGPLGW
Sbjct: 350 VLLLEAGVQMFFSQVVIAIILGVKVTDTSTNLSKGFAILVVVMICTYVAAFAWSWGPLGW 409
Query: 359 LIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHFKFGIFLFFSGWVLIMSCFV 418
LIPSETFPLETRSAGQSVTVCVNLLFTF+IAQAFLSMLCHFKFGIF+FFS WVLIMS FV
Sbjct: 410 LIPSETFPLETRSAGQSVTVCVNLLFTFIIAQAFLSMLCHFKFGIFIFFSAWVLIMSVFV 469
Query: 419 FFLLPETKNVPIEEMTERVWKQHWLWKNFMVDDGFDDD---EPKKNGHRNGFDPVSQL 473
FLLPETKN+PIEEMTERVWK+HW W FM DD D + K NG NGFDP ++L
Sbjct: 470 MFLLPETKNIPIEEMTERVWKKHWFWARFM-DDHNDHEFVNGEKSNGKSNGFDPSTRL 526
|
|
| TAIR|locus:2132213 STP7 "sugar transporter protein 7" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1468 (521.8 bits), Expect = 2.0e-150, P = 2.0e-150
Identities = 274/459 (59%), Positives = 346/459 (75%)
Query: 1 MPHFLKKFFPVVYRRTQQGDDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYXXXXXXXX 60
M FL++FF VY + +Q +SNYCKYDNQGL FTSSLYLAGL +T AS
Sbjct: 54 MDEFLEEFFHTVYEKKKQAHESNYCKYDNQGLAAFTSSLYLAGLVSTLVASPITRNYGRR 113
Query: 61 XXXXIAGIFFIAGVAFNVAAQNLAMLIVGRILLGCGVGFANQAVPLFLSEIAPTRIRGGL 120
GI F+ G N A NLAML+ GRI+LG G+GF NQAVPL+LSE+APT +RGGL
Sbjct: 114 ASIVCGGISFLIGSGLNAGAVNLAMLLAGRIMLGVGIGFGNQAVPLYLSEVAPTHLRGGL 173
Query: 121 NILFQLNVTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVGSLLVTDTPNSLI 180
N++FQL TIGI AN+VNYGT +K WGWR+SLGLA PA L+T+G + +TPNSL+
Sbjct: 174 NMMFQLATTIGIFTANMVNYGTQQLKP-WGWRLSLGLAAFPALLMTLGGYFLPETPNSLV 232
Query: 181 ERGRFEEGKAVLRKIRGTDKIEPEFLELVEASRIAKEVKHPFRNLLKRRNRPQLVIAVAL 240
ERG E G+ VL K+RGT+ + E ++V+AS +A +KHPFRN+L++R+RPQLV+A+ +
Sbjct: 233 ERGLTERGRRVLVKLRGTENVNAELQDMVDASELANSIKHPFRNILQKRHRPQLVMAICM 292
Query: 241 QIFQQCTGINAIMFYAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRML 300
+FQ TGIN+I+FYAPVLF+T+GFGG+ASLYS+ +TGAV VLST +SI VD++GRR L
Sbjct: 293 PMFQILTGINSILFYAPVLFQTMGFGGNASLYSSALTGAVLVLSTFISIGLVDRLGRRAL 352
Query: 301 LLEAGIQMFLSQTVIAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLI 360
L+ GIQM + Q ++A+ILG+K D+ E L G++V+VVI IC F+ AF WSWGPLGW I
Sbjct: 353 LITGGIQMIICQVIVAVILGVKFGDNQE-LSKGYSVIVVIFICLFVVAFGWSWGPLGWTI 411
Query: 361 PSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHFKFGIFLFFSGWVLIMSCFVFF 420
PSE FPLETRSAGQS+TV VNLLFTF+IAQAFL +LC FKFGIFLFF+GWV +M+ FV+F
Sbjct: 412 PSEIFPLETRSAGQSITVAVNLLFTFIIAQAFLGLLCAFKFGIFLFFAGWVTVMTIFVYF 471
Query: 421 LLPETKNVPIEEMTERVWKQHWLWKNFMVDDGFDDDEPK 459
LLPETK VPIEEMT +W +HW WK + D +DE K
Sbjct: 472 LLPETKGVPIEEMT-LLWSKHWFWKKVLPDATNLEDESK 509
|
|
| TAIR|locus:2083003 STP6 "sugar transporter 6" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1369 (487.0 bits), Expect = 6.3e-140, P = 6.3e-140
Identities = 267/461 (57%), Positives = 328/461 (71%)
Query: 1 MPHFLKKFFPVVYRRTQQGDDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYXXXXXXXX 60
M FLK+FFP V+ R + ++NYCKYDNQ LQLFTSSLYLA L A+F AS
Sbjct: 48 MDDFLKEFFPAVWERKKHVHENNYCKYDNQFLQLFTSSLYLAALVASFVASATCSKLGRR 107
Query: 61 XXXXIAGIFFIAGVAFNVAAQNLAMLIVGRILLGCGVGFANQAVPLFLSEIAPTRIRGGL 120
A IFF+ GV A NL MLI+GR+ LG GVGF NQAVPLFLSEIAP ++RGGL
Sbjct: 108 PTMQFASIFFLIGVGLTAGAVNLVMLIIGRLFLGFGVGFGNQAVPLFLSEIAPAQLRGGL 167
Query: 121 NILFQLNVTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVGSLLVTDTPNSLI 180
NI+FQL VTIGIL AN+VNY T+ + +GWRI+LG AGIPA +L GSLL+ +TP SLI
Sbjct: 168 NIVFQLMVTIGILIANIVNYFTATVHP-YGWRIALGGAGIPAVILLFGSLLIIETPTSLI 226
Query: 181 ERGRFEEGKAVLRKIRGTDKIEPEFLELVEASRIAKEVKHPFRNLLKRRNRPQLVIAVAL 240
ER + EEGK LRKIRG D I E+ +V A IA +VK P+R LLK +RP +I + L
Sbjct: 227 ERNKNEEGKEALRKIRGVDDINDEYESIVHACDIASQVKDPYRKLLKPASRPPFIIGMLL 286
Query: 241 QIFQQCTGINAIMFYAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRML 300
Q+FQQ TGINAIMFYAPVLF+T+GFG A+L S VITG++NVL+T V IY VD+ GRR L
Sbjct: 287 QLFQQFTGINAIMFYAPVLFQTVGFGSDAALLSAVITGSINVLATFVGIYLVDRTGRRFL 346
Query: 301 LLEAGIQMFLSQTVIAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLI 360
LL++ + M + Q +I IIL K + L A++VVI +C ++ FAWSWGPLGWLI
Sbjct: 347 LLQSSVHMLICQLIIGIILA-KDLGVTGTLGRPQALVVVIFVCVYVMGFAWSWGPLGWLI 405
Query: 361 PSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHFKFGIFLFFSGWVLIMSCFVFF 420
PSETFPLETRSAG +V V N+ FTFVIAQAFLSMLC + GIF FFSGW+++M F FF
Sbjct: 406 PSETFPLETRSAGFAVAVSCNMFFTFVIAQAFLSMLCGMRSGIFFFFSGWIIVMGLFAFF 465
Query: 421 LLPETKNVPIEEMTERVWKQHWLWKNFMVDDGFDDDEPKKN 461
+PETK + I++M E VWK HW WK +M+ + D K+N
Sbjct: 466 FIPETKGIAIDDMRESVWKPHWFWKRYMLPEDDHHDIEKRN 506
|
|
| TAIR|locus:2179734 AT5G26250 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1365 (485.6 bits), Expect = 1.7e-139, P = 1.7e-139
Identities = 267/459 (58%), Positives = 329/459 (71%)
Query: 1 MPHFLKKFFPVVYRRTQQGDDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYXXXXXXXX 60
M FLK+FFP VY R + ++NYCKYDNQ LQLFTSSLYLA L A+FFAS
Sbjct: 49 MDDFLKEFFPSVYERKKHAHENNYCKYDNQFLQLFTSSLYLAALVASFFASATCSKLGRR 108
Query: 61 XXXXIAGIFFIAGVAFNVAAQNLAMLIVGRILLGCGVGFANQAVPLFLSEIAPTRIRGGL 120
+A IFF+ GV A N+ MLI+GRILLG GVGF NQAVPLFLSEIAP R+RGGL
Sbjct: 109 PTMQLASIFFLIGVGLAAGAVNIYMLIIGRILLGFGVGFGNQAVPLFLSEIAPARLRGGL 168
Query: 121 NILFQLNVTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVGSLLVTDTPNSLI 180
NI+FQL VTIGIL AN+VNY TS I +GWRI+LG AGIPA +L GSLL+ +TP SLI
Sbjct: 169 NIVFQLMVTIGILIANIVNYFTSSIHP-YGWRIALGGAGIPALILLFGSLLICETPTSLI 227
Query: 181 ERGRFEEGKAVLRKIRGTDKIEPEFLELVEASRIAKEVKHPFRNLLKRRNRPQLVIAVAL 240
ER + +EGK L+KIRG + ++ E+ +V A IA++VK P+ L+K +RP VI + L
Sbjct: 228 ERNKTKEGKETLKKIRGVEDVDEEYESIVHACDIARQVKDPYTKLMKPASRPPFVIGMLL 287
Query: 241 QIFQQCTGINAIMFYAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRML 300
Q FQQ TGINAIMFYAPVLF+T+GFG A+L S V+TG +NVLST V I+ VDK GRR L
Sbjct: 288 QFFQQFTGINAIMFYAPVLFQTVGFGNDAALLSAVVTGTINVLSTFVGIFLVDKTGRRFL 347
Query: 301 LLEAGIQMFLSQTVIAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLI 360
LL++ + M + Q VI IIL K D + L A++VVI +C ++ FAWSWGPLGWLI
Sbjct: 348 LLQSSVHMLICQLVIGIILA-KDLDVTGTLARPQALVVVIFVCVYVMGFAWSWGPLGWLI 406
Query: 361 PSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHFKFGIFLFFSGWVLIMSCFVFF 420
PSETFPLETR+ G ++ V N+ FTFVIAQAFLSMLC K GIF FFSGW+++M F F
Sbjct: 407 PSETFPLETRTEGFALAVSCNMFFTFVIAQAFLSMLCAMKSGIFFFFSGWIVVMGLFALF 466
Query: 421 LLPETKNVPIEEMTERVWKQHWLWKNFMVDDGFDDDEPK 459
+PETK V I++M + VWK HW WK FM+++ D E +
Sbjct: 467 FVPETKGVSIDDMRDSVWKLHWYWKRFMLEEDEHDVEKR 505
|
|
| TAIR|locus:2195995 STP14 "sugar transport protein 14" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1339 (476.4 bits), Expect = 9.5e-137, P = 9.5e-137
Identities = 259/452 (57%), Positives = 332/452 (73%)
Query: 1 MPHFLKKFFPVVYRRTQQG-DDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYXXXXXXX 59
M FLK+FFP +Y+R Q ++++YCKYDNQ L LFTSSLY AGL +TF ASY
Sbjct: 53 MDDFLKEFFPGIYKRKQMHLNETDYCKYDNQILTLFTSSLYFAGLISTFGASYVTRIYGR 112
Query: 60 XXXXXIAGIFFIAGVAFNVAAQNLAMLIVGRILLGCGVGFANQAVPLFLSEIAPTRIRGG 119
+ + F G N AA+N+ MLI+GRI LG G+GF NQAVPL+LSE+AP +IRG
Sbjct: 113 RGSILVGSVSFFLGGVINAAAKNILMLILGRIFLGIGIGFGNQAVPLYLSEMAPAKIRGT 172
Query: 120 LNILFQLNVTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVGSLLVTDTPNSL 179
+N LFQL IGIL ANL+NY T I WGWR+SLGLA +PA L+ +G L++ +TPNSL
Sbjct: 173 VNQLFQLTTCIGILVANLINYKTEQIHP-WGWRLSLGLATVPAILMFLGGLVLPETPNSL 231
Query: 180 IERGRFEEGKAVLRKIRGTDKIEPEFLELVEASRIAKEVKHPFRNLLKRRNRPQLVI-AV 238
+E+G+ E+ KAVL K+RGT+ IE EF +LVEAS A+ VK+PFRNLL RRNRPQLVI A+
Sbjct: 232 VEQGKLEKAKAVLIKVRGTNNIEAEFQDLVEASDAARAVKNPFRNLLARRNRPQLVIGAI 291
Query: 239 ALQIFQQCTGINAIMFYAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRR 298
L FQQ TG+N+I+FYAPV+F++LGFGGSASL S+ IT A V++ ++S+YS DK GRR
Sbjct: 292 GLPAFQQLTGMNSILFYAPVMFQSLGFGGSASLISSTITNAALVVAAIMSMYSADKFGRR 351
Query: 299 MLLLEAGIQMFLSQTVIAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGW 358
LLLEA ++MF V+ + L +K + E L +++V++IC F+ A+ SWGP+GW
Sbjct: 352 FLLLEASVEMFCYMVVVGVTLALKFGEGKE-LPKSLGLILVVLICLFVLAYGRSWGPMGW 410
Query: 359 LIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHFKFGIFLFFSGWVLIMSCFV 418
L+PSE FPLETRSAGQSV VCVNL FT +IAQ FL LCH K+GIFL F+G +L M FV
Sbjct: 411 LVPSELFPLETRSAGQSVVVCVNLFFTALIAQCFLVSLCHLKYGIFLLFAGLILGMGSFV 470
Query: 419 FFLLPETKNVPIEEMTERVWKQHWLWKNFMVD 450
+FLLPETK VPIEE+ +W+QHWLWK ++ D
Sbjct: 471 YFLLPETKQVPIEEVY-LLWRQHWLWKKYVED 501
|
|
| TAIR|locus:2202044 STP1 "AT1G11260" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1330 (473.2 bits), Expect = 8.5e-136, P = 8.5e-136
Identities = 258/470 (54%), Positives = 336/470 (71%)
Query: 1 MPHFLKKFFPVVYRRTQQGDDSN-YCKYDNQGLQLFTSSLYLAGLTATFFASYXXXXXXX 59
MP FLK+FFP VYR+ Q+ +N YC+YD+ L +FTSSLYLA L ++ AS
Sbjct: 50 MPSFLKRFFPSVYRKQQEDASTNQYCQYDSPTLTMFTSSLYLAALISSLVASTVTRKFGR 109
Query: 60 XXXXXIAGIFFIAGVAFNVAAQNLAMLIVGRILLGCGVGFANQAVPLFLSEIAPTRIRGG 119
GI F AG N A+++ MLIVGRILLG G+GFANQAVPL+LSE+AP + RG
Sbjct: 110 RLSMLFGGILFCAGALINGFAKHVWMLIVGRILLGFGIGFANQAVPLYLSEMAPYKYRGA 169
Query: 120 LNILFQLNVTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVGSLLVTDTPNSL 179
LNI FQL++TIGIL A ++NY + IK WGWR+SLG A +PA ++T+GSL++ DTPNS+
Sbjct: 170 LNIGFQLSITIGILVAEVLNYFFAKIKGGWGWRLSLGGAVVPALIITIGSLVLPDTPNSM 229
Query: 180 IERGRFEEGKAVLRKIRGTDKIEPEFLELVEASRIAKEVKHPFRNLLKRRNRPQLVIAVA 239
IERG+ EE K LR+IRG D + EF +LV AS+ ++ ++HP+RNLL+R+ RP L +AV
Sbjct: 230 IERGQHEEAKTKLRRIRGVDDVSQEFDDLVAASKESQSIEHPWRNLLRRKYRPHLTMAVM 289
Query: 240 LQIFQQCTGINAIMFYAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRM 299
+ FQQ TGIN IMFYAPVLF T+GF ASL S V+TG+VNV +TLVSIY VD+ GRR
Sbjct: 290 IPFFQQLTGINVIMFYAPVLFNTIGFTTDASLMSAVVTGSVNVAATLVSIYGVDRWGRRF 349
Query: 300 LLLEAGIQMFLSQTVIAIILGIK--VKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLG 357
L LE G QM + Q V+A +G K V +L +A++VV IC +++ FAWSWGPLG
Sbjct: 350 LFLEGGTQMLICQAVVAACIGAKFGVDGTPGELPKWYAIVVVTFICIYVAGFAWSWGPLG 409
Query: 358 WLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHFKFGIFLFFSGWVLIMSCF 417
WL+PSE FPLE RSA QS+TV VN++FTF+IAQ FL+MLCH KFG+FL F+ +V++MS F
Sbjct: 410 WLVPSEIFPLEIRSAAQSITVSVNMIFTFIIAQIFLTMLCHLKFGLFLVFAFFVVVMSIF 469
Query: 418 VFFLLPETKNVPIEEMTERVWKQHWLWKNFMVDDGFDDD-EPKKNGHRNG 466
V+ LPETK +PIEEM + VW+ HW W F+ D + + E KN ++ G
Sbjct: 470 VYIFLPETKGIPIEEMGQ-VWRSHWYWSRFVEDGEYGNALEMGKNSNQAG 518
|
|
| TAIR|locus:2092221 AT3G19940 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1326 (471.8 bits), Expect = 2.3e-135, P = 2.3e-135
Identities = 252/462 (54%), Positives = 333/462 (72%)
Query: 1 MPHFLKKFFPVVYRRTQQGD-DSNYCKYDNQGLQLFTSSLYLAGLTATFFASYXXXXXXX 59
M FL KFFP V + ++ D+ YCK+DNQ LQLFTSSLYLA L A+F AS
Sbjct: 52 MEEFLTKFFPQVESQMKKAKHDTAYCKFDNQMLQLFTSSLYLAALVASFMASVITRKHGR 111
Query: 60 XXXXXIAGIFFIAGVAFNVAAQNLAMLIVGRILLGCGVGFANQAVPLFLSEIAPTRIRGG 119
I G+ F+ G FN A N++MLI+GR+LLG GVGFANQ+ P++LSE+AP +IRG
Sbjct: 112 KVSMFIGGLAFLIGALFNAFAVNVSMLIIGRLLLGVGVGFANQSTPVYLSEMAPAKIRGA 171
Query: 120 LNILFQLNVTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVGSLLVTDTPNSL 179
LNI FQ+ +TIGIL ANL+NYGTS + +Q GWR+SLGLA +PA ++ +GS ++ DTPNS+
Sbjct: 172 LNIGFQMAITIGILVANLINYGTSKM-AQHGWRVSLGLAAVPAVVMVIGSFILPDTPNSM 230
Query: 180 IERGRFEEGKAVLRKIRGTDKIEPEFLELVEASRIAKEVKHPFRNLLKRRNRPQLVIAVA 239
+ERG+ EE K +L+KIRG D ++ EF +L++A AK+V++P++N+++ + RP L+ A
Sbjct: 231 LERGKNEEAKQMLKKIRGADNVDHEFQDLIDAVEAAKKVENPWKNIMESKYRPALIFCSA 290
Query: 240 LQIFQQCTGINAIMFYAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRM 299
+ FQQ TGIN IMFYAPVLFKTLGFG A+L S VITG VN+LST VSIY+VD+ GRR+
Sbjct: 291 IPFFQQITGINVIMFYAPVLFKTLGFGDDAALMSAVITGVVNMLSTFVSIYAVDRYGRRL 350
Query: 300 LLLEAGIQMFLSQTVIAIILGIKV-KDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGW 358
L LE GIQMF+ Q ++ +G + + L A ++ IC +++ FAWSWGPLGW
Sbjct: 351 LFLEGGIQMFICQLLVGSFIGARFGTSGTGTLTPATADWILAFICVYVAGFAWSWGPLGW 410
Query: 359 LIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHFKFGIFLFFSGWVLIMSCFV 418
L+PSE PLE R AGQ++ V VN+ FTF+I Q FL+MLCH KFG+F FF+ V IM+ F+
Sbjct: 411 LVPSEICPLEIRPAGQAINVSVNMFFTFLIGQFFLTMLCHMKFGLFYFFASMVAIMTVFI 470
Query: 419 FFLLPETKNVPIEEMTERVWKQHWLWKNFMVDD----GFDDD 456
+FLLPETK VPIEEM RVWKQHW WK ++ +D G DD+
Sbjct: 471 YFLLPETKGVPIEEMG-RVWKQHWFWKKYIPEDAIIGGHDDN 511
|
|
| TAIR|locus:2011957 STP9 "sugar transporter 9" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1313 (467.3 bits), Expect = 5.4e-134, P = 5.4e-134
Identities = 252/454 (55%), Positives = 328/454 (72%)
Query: 1 MPHFLKKFFPVVYRRTQQGD-DSNYCKYDNQGLQLFTSSLYLAGLTATFFASYXXXXXXX 59
M FL KFFP V ++ + ++ YCK+DNQ LQLFTSSLYLA L ++F AS
Sbjct: 52 MEEFLSKFFPEVDKQMHEARRETAYCKFDNQLLQLFTSSLYLAALASSFVASAVTRKYGR 111
Query: 60 XXXXXIAGIFFIAGVAFNVAAQNLAMLIVGRILLGCGVGFANQAVPLFLSEIAPTRIRGG 119
+ G+ F+ G FN A N+AMLIVGR+LLG GVGFANQ+ P++LSE+AP +IRG
Sbjct: 112 KISMFVGGVAFLIGSLFNAFATNVAMLIVGRLLLGVGVGFANQSTPVYLSEMAPAKIRGA 171
Query: 120 LNILFQLNVTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVGSLLVTDTPNSL 179
LNI FQ+ +TIGIL ANL+NYGTS + GWR+SLGLA +PA ++ +GS ++ DTPNS+
Sbjct: 172 LNIGFQMAITIGILIANLINYGTSQMAKN-GWRVSLGLAAVPAVIMVIGSFVLPDTPNSM 230
Query: 180 IERGRFEEGKAVLRKIRGTDKIEPEFLELVEASRIAKEVKHPFRNLLKR-RNRPQLVIAV 238
+ERG++E+ + +L+KIRG D ++ EF +L +A AK+V +P++N+ ++ + RP LV
Sbjct: 231 LERGKYEQAREMLQKIRGADNVDEEFQDLCDACEAAKKVDNPWKNIFQQAKYRPALVFCS 290
Query: 239 ALQIFQQCTGINAIMFYAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRR 298
A+ FQQ TGIN IMFYAPVLFKTLGF ASL S VITGAVNV+STLVSIY+VD+ GRR
Sbjct: 291 AIPFFQQITGINVIMFYAPVLFKTLGFADDASLISAVITGAVNVVSTLVSIYAVDRYGRR 350
Query: 299 MLLLEAGIQMFLSQTVIAIILGIKV-KDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLG 357
+L LE GIQM +SQ V+ ++G+K S L A ++ IC +++ FAWSWGPLG
Sbjct: 351 ILFLEGGIQMIVSQIVVGTLIGMKFGTTGSGTLTPATADWILAFICLYVAGFAWSWGPLG 410
Query: 358 WLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHFKFGIFLFFSGWVLIMSCF 417
WL+PSE PLE R AGQ++ V VN+ FTF+I Q FL+MLCH KFG+F FF G V +M+ F
Sbjct: 411 WLVPSEICPLEIRPAGQAINVSVNMFFTFLIGQFFLTMLCHMKFGLFYFFGGMVAVMTVF 470
Query: 418 VFFLLPETKNVPIEEMTERVWKQHWLWKNFMVDD 451
++FLLPETK VPIEEM RVWKQH WK +M DD
Sbjct: 471 IYFLLPETKGVPIEEMG-RVWKQHPFWKRYMPDD 503
|
|
| TAIR|locus:2166781 STP11 "sugar transporter 11" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1305 (464.4 bits), Expect = 3.8e-133, P = 3.8e-133
Identities = 259/461 (56%), Positives = 327/461 (70%)
Query: 1 MPHFLKKFFPVVYRRTQ--QGDDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYXXXXXX 58
M FL KFFP V R+ Q +G ++ YCKYDN+ L LFTSSLYLA L A+F AS
Sbjct: 51 MEDFLTKFFPDVLRQMQNKRGRETEYCKYDNELLTLFTSSLYLAALFASFLASTITRLFG 110
Query: 59 XXXXXXIAGIFFIAGVAFNVAAQNLAMLIVGRILLGCGVGFANQAVPLFLSEIAPTRIRG 118
I + F++G N A NL MLI+GR+ LG GVGFANQ+VPL+LSE+AP +IRG
Sbjct: 111 RKVSMVIGSLAFLSGALLNGLAINLEMLIIGRLFLGVGVGFANQSVPLYLSEMAPAKIRG 170
Query: 119 GLNILFQLNVTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVGSLLVTDTPNS 178
LNI FQL +TIGIL AN+VNY T +++ GWR+SLGLAG+PA ++ VG + DTPNS
Sbjct: 171 ALNIGFQLAITIGILAANIVNYVTPKLQNGIGWRLSLGLAGVPAVMMLVGCFFLPDTPNS 230
Query: 179 LIERGRFEEGKAVLRKIRGTDKIEPEFLELVEASRIAKEVKHPFRNLLKRRNRPQLVIAV 238
++ERG E+ K +L+KIRGT ++E EF EL A AK+VKHP+ N+++ R RPQL
Sbjct: 231 ILERGNKEKAKEMLQKIRGTMEVEHEFNELCNACEAAKKVKHPWTNIMQARYRPQLTFCT 290
Query: 239 ALQIFQQCTGINAIMFYAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRR 298
+ FQQ TGIN IMFYAPVLFKT+GFG ASL S VITG VNVLST+VSIYSVDK GRR
Sbjct: 291 FIPFFQQLTGINVIMFYAPVLFKTIGFGNDASLISAVITGLVNVLSTIVSIYSVDKFGRR 350
Query: 299 MLLLEAGIQMFLSQTVIAIILGIKVKDHSEDLHTGF-AVLVVIMICTFISAFAWSWGPLG 357
L L+ G QM ++Q + ++G K + E +G A +++ +IC +++ FAWSWGPLG
Sbjct: 351 ALFLQGGFQMIVTQIAVGSMIGWKFGFNGEGNLSGVDADIILALICLYVAGFAWSWGPLG 410
Query: 358 WLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHFKFGIFLFFSGWVLIMSCF 417
WL+PSE PLE RSAGQS+ V VN+ FTF I Q FL+MLCH KFG+F FF+G VLIM+ F
Sbjct: 411 WLVPSEICPLEIRSAGQSLNVSVNMFFTFFIGQFFLTMLCHMKFGLFYFFAGMVLIMTIF 470
Query: 418 VFFLLPETKNVPIEEMTERVWKQHWLWKNFMV-DDGFDDDE 457
++FLLPETK VPIEEM +VWK+H W + DDG D D+
Sbjct: 471 IYFLLPETKGVPIEEMG-KVWKEHRYWGKYSNNDDGDDVDD 510
|
|
| TAIR|locus:2092286 STP4 "sugar transporter 4" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1268 (451.4 bits), Expect = 3.2e-129, P = 3.2e-129
Identities = 233/452 (51%), Positives = 327/452 (72%)
Query: 1 MPHFLKKFFPVVYRRTQQGDDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYXXXXXXXX 60
M FL++FFP VY++ + ++ YC++D+Q L LFTSSLY+A L ++ FAS
Sbjct: 50 MEPFLEEFFPYVYKKMKSAHENEYCRFDSQLLTLFTSSLYVAALVSSLFASTITRVFGRK 109
Query: 61 XXXXIAGIFFIAGVAFNVAAQNLAMLIVGRILLGCGVGFANQAVPLFLSEIAPTRIRGGL 120
+ G F G AFN AQN+AML++GRILLG GVGFANQ+VP++LSE+AP +RG
Sbjct: 110 WSMFLGGFTFFIGSAFNGFAQNIAMLLIGRILLGFGVGFANQSVPVYLSEMAPPNLRGAF 169
Query: 121 NILFQLNVTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVGSLLVTDTPNSLI 180
N FQ+ + GI+ A ++NY T+ +K GWRISLGLA +PA ++ +G+L++ DTPNSLI
Sbjct: 170 NNGFQVAIIFGIVVATIINYFTAQMKGNIGWRISLGLACVPAVMIMIGALILPDTPNSLI 229
Query: 181 ERGRFEEGKAVLRKIRGTDKIEPEFLELVEASRIAKEVKHPFRNLLKRRNRPQLVIAVAL 240
ERG EE K +L+ IRGT++++ EF +L++AS +K+VKHP++N++ R RPQL++ +
Sbjct: 230 ERGYTEEAKEMLQSIRGTNEVDEEFQDLIDASEESKQVKHPWKNIMLPRYRPQLIMTCFI 289
Query: 241 QIFQQCTGINAIMFYAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRML 300
FQQ TGIN I FYAPVLF+TLGFG ASL S ++TG + +L T VS+++VD+ GRR+L
Sbjct: 290 PFFQQLTGINVITFYAPVLFQTLGFGSKASLLSAMVTGIIELLCTFVSVFTVDRFGRRIL 349
Query: 301 LLEAGIQMFLSQTVIAIILGIKVK-DHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWL 359
L+ GIQM +SQ I ++G+K + ++ A L+V +IC +++ FAWSWGPLGWL
Sbjct: 350 FLQGGIQMLVSQIAIGAMIGVKFGVAGTGNIGKSDANLIVALICIYVAGFAWSWGPLGWL 409
Query: 360 IPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHFKFGIFLFFSGWVLIMSCFVF 419
+PSE PLE RSA Q++ V VN+ FTF++AQ FL+MLCH KFG+F FF+ +V+IM+ F++
Sbjct: 410 VPSEISPLEIRSAAQAINVSVNMFFTFLVAQLFLTMLCHMKFGLFFFFAFFVVIMTIFIY 469
Query: 420 FLLPETKNVPIEEMTERVWKQHWLWKNFMVDD 451
+LPETKNVPIEEM RVWK HW W F+ D+
Sbjct: 470 LMLPETKNVPIEEMN-RVWKAHWFWGKFIPDE 500
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q94AZ2 | STP13_ARATH | No assigned EC number | 0.8246 | 0.9957 | 0.8954 | yes | no |
| Q41144 | STC_RICCO | No assigned EC number | 0.5895 | 0.9598 | 0.8680 | N/A | no |
| C0SPB2 | YWTG_BACSU | No assigned EC number | 0.3374 | 0.8372 | 0.8665 | yes | no |
| Q39524 | HUP2_PARKE | No assigned EC number | 0.5351 | 0.9704 | 0.85 | N/A | no |
| Q39525 | HUP3_PARKE | No assigned EC number | 0.5096 | 0.9640 | 0.8539 | N/A | no |
| Q10710 | STA_RICCO | No assigned EC number | 0.5887 | 0.9598 | 0.8697 | N/A | no |
| P15686 | HUP1_PARKE | No assigned EC number | 0.5154 | 0.9408 | 0.8333 | N/A | no |
| Q07423 | HEX6_RICCO | No assigned EC number | 0.5468 | 0.9619 | 0.8921 | N/A | no |
| P0AEP2 | GALP_ECOL6 | No assigned EC number | 0.3292 | 0.8266 | 0.8426 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 473 | |||
| pfam00083 | 449 | pfam00083, Sugar_tr, Sugar (and other) transporter | 1e-114 | |
| TIGR00879 | 481 | TIGR00879, SP, MFS transporter, sugar porter (SP) | 1e-107 | |
| PRK10077 | 479 | PRK10077, xylE, D-xylose transporter XylE; Provisi | 3e-58 | |
| TIGR00898 | 505 | TIGR00898, 2A0119, cation transport protein | 5e-17 | |
| pfam07690 | 346 | pfam07690, MFS_1, Major Facilitator Superfamily | 1e-16 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 6e-16 | |
| TIGR00883 | 394 | TIGR00883, 2A0106, metabolite-proton symporter | 1e-11 | |
| TIGR00895 | 398 | TIGR00895, 2A0115, benzoate transport | 4e-11 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 1e-09 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 2e-06 | |
| COG2814 | 394 | COG2814, AraJ, Arabinose efflux permease [Carbohyd | 6e-06 | |
| TIGR00887 | 502 | TIGR00887, 2A0109, phosphate:H+ symporter | 2e-05 | |
| pfam13347 | 425 | pfam13347, MFS_2, MFS/sugar transport protein | 1e-04 | |
| TIGR00880 | 141 | TIGR00880, 2_A_01_02, Multidrug resistance protein | 1e-04 | |
| TIGR01299 | 742 | TIGR01299, synapt_SV2, synaptic vesicle protein SV | 7e-04 | |
| pfam07690 | 346 | pfam07690, MFS_1, Major Facilitator Superfamily | 0.001 | |
| TIGR00893 | 399 | TIGR00893, 2A0114, D-galactonate transporter | 0.002 | |
| pfam10187 | 99 | pfam10187, Nefa_Nip30_N, N-terminal domain of NEFA | 0.003 |
| >gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter | Back alignment and domain information |
|---|
Score = 343 bits (883), Expect = e-114
Identities = 150/416 (36%), Positives = 226/416 (54%), Gaps = 12/416 (2%)
Query: 24 YCKYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVAAQ-- 81
C L S + L + FA R GR+ ++LI + F+ G A+
Sbjct: 40 ACAASTVLSGLIVSIFSVGCLIGSLFAGKLGDRFGRKKSLLIGNVLFVIGALLQGFAKGK 99
Query: 82 NLAMLIVGRILLGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYG 141
+ MLIVGR+++G GVG + VP+++SEIAP ++RG L L+QL +T GIL A ++ G
Sbjct: 100 SFYMLIVGRVIVGLGVGGISVLVPMYISEIAPKKLRGALGSLYQLGITFGILVAAIIGLG 159
Query: 142 TSHIKSQWGWRISLGLAGIPAALLTVGSLLVTDTPNSLIERGRFEEGKAVLRKIRGTDKI 201
+ + GWRI LGL +PA LL +G L + ++P L+ +G+ EE +AVL K+RG +
Sbjct: 160 LNKYSNSDGWRIPLGLQFVPAILLLIGLLFLPESPRWLVLKGKLEEARAVLAKLRGVSDV 219
Query: 202 EPEFLELVEAS-RIAKEVKHPFRNLLKRRNRPQ-LVIAVALQIFQQCTGINAIMFYAPVL 259
+ E E ++ R + K + L + + Q L++ V LQIFQQ TGINAI +Y+P +
Sbjct: 220 DQEIQEEKDSLERSVEAEKASWLELFRGKTVRQRLLMGVMLQIFQQLTGINAIFYYSPTI 279
Query: 260 FKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIIL 319
F+TLG S T+I G VN + T ++I+ VD+ GRR LLL M + V+ + L
Sbjct: 280 FETLGLSDSL--LVTIIVGVVNFVFTFIAIFLVDRFGRRPLLLLGAAGMAICFLVLGVAL 337
Query: 320 GIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVC 379
K G ++ ++ I FI+ FA WGP+ W+I SE FPL R ++
Sbjct: 338 LGVAK------SKGAGIVAIVFILLFIAFFALGWGPVPWVIVSELFPLGVRPKAMAIATA 391
Query: 380 VNLLFTFVIAQAFLSMLCHFKFGIFLFFSGWVLIMSCFVFFLLPETKNVPIEEMTE 435
N L F+I F + +FL F+G +++ FVFF +PETK +EE+ E
Sbjct: 392 ANWLANFLIGFLFPIITGAIGGYVFLVFAGLLVLFILFVFFFVPETKGRTLEEIDE 447
|
Length = 449 |
| >gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Score = 325 bits (836), Expect = e-107
Identities = 157/419 (37%), Positives = 222/419 (52%), Gaps = 15/419 (3%)
Query: 26 KYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVA---AQN 82
Y + L S + G FA + + R GR+ ++LI + F+ G A +
Sbjct: 67 SYSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFALS 126
Query: 83 LAMLIVGRILLGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGT 142
+ MLIVGR+LLG GVG A+ VP++LSEIAP +RG L L+QL +T GIL A G
Sbjct: 127 VEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGK 186
Query: 143 SHIKSQWGWRISLGLAGIPAALLTVGSLLVTDTPNSLIERGRFEEGKAVLRKIRGTDKIE 202
+ + GWRI LGL IPA LL +G + ++P L+ +GR EE + L ++RGT +
Sbjct: 187 VSLNNTLGWRIPLGLQLIPAGLLFLGLFFLPESPRWLVGKGRVEEARKSLARLRGTSGED 246
Query: 203 PEFLELVEASRIAKEVKHPFRNL-------LKRRNRPQLVIAVALQIFQQCTGINAIMFY 255
E L+ +E I + ++ RR R +L + V LQ FQQ TGINAIM+Y
Sbjct: 247 KELLDELELIDIKRSIEKRSVQPSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYY 306
Query: 256 APVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVI 315
+P +F+ G + ++I GAVN T V+I+ VD+ GRR LLL M + V+
Sbjct: 307 SPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVL 366
Query: 316 AIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQS 375
I+ V S+ V I FI+ FA WGP+ W+I SE FPL R G S
Sbjct: 367 GILGASFVTGSSKSSGNVAIV----FILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGIS 422
Query: 376 VTVCVNLLFTFVIAQAFLSMLCHFKFG-IFLFFSGWVLIMSCFVFFLLPETKNVPIEEM 433
+ V N L F++ F +ML G +F+FF G ++ FV+F LPETK +EE+
Sbjct: 423 IAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLIFVYFFLPETKGRTLEEI 481
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 481 |
| >gnl|CDD|182225 PRK10077, xylE, D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Score = 199 bits (507), Expect = 3e-58
Identities = 123/436 (28%), Positives = 205/436 (47%), Gaps = 52/436 (11%)
Query: 35 FTSSLYLAG-LTATFFASYTTRRLGRRLTMLIAGI-FFIAGVA--------FNVAAQNLA 84
F + L G + Y + R GRR ++ IA + FFI+ + ++ N
Sbjct: 59 FCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTG 118
Query: 85 MLI---VGRILLGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYG 141
+ + RI+ G GVG A+ P++++EIAP IRG L Q + G L VNY
Sbjct: 119 YVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYF 178
Query: 142 TSHIKS-QW----GWRISLGLAGIPAALLTVGSLLVTDTPNSLIERGRFEEGKAVLRKIR 196
+ W GWR IPA L + V +TP L+ RG+ E+ + +LRKI
Sbjct: 179 IARSGDASWLNTDGWRYMFASEAIPALLFLMLLYFVPETPRYLMSRGKQEQAEGILRKIM 238
Query: 197 GTDKIEPEFLELVEASRIAKEVKHPFRNLLKRRNR------PQLVIAVALQIFQQCTGIN 250
G A++ +E+KH + K + +VI V L +FQQ GIN
Sbjct: 239 GNTL----------ATQALQEIKHSLDHGRKTGGKLLMFGVGVIVIGVMLSVFQQFVGIN 288
Query: 251 AIMFYAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFL 310
+++YAP +FKTLG +L T+I G +N+ T+++I +VDK GR+ L + + M +
Sbjct: 289 VVLYYAPEIFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAI 348
Query: 311 SQTVIAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETR 370
+ + ++ ++ + +++AFA SWGP+ W++ SE FP R
Sbjct: 349 GMFSLG----------TAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIR 398
Query: 371 SAGQSVTVCVNLLFTFVIAQAFLSM------LCHFKFGIFLFFSGWVLIMSC-FVFFLLP 423
++ V + + ++ F M + HF G + G + +++ F++ +P
Sbjct: 399 GKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVP 458
Query: 424 ETKNVPIEEMTERVWK 439
ETK +EEM E +W+
Sbjct: 459 ETKGKTLEEM-EALWE 473
|
Length = 479 |
| >gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein | Back alignment and domain information |
|---|
Score = 82.8 bits (205), Expect = 5e-17
Identities = 110/422 (26%), Positives = 176/422 (41%), Gaps = 59/422 (13%)
Query: 28 DNQGLQLFTSSLYLAGLTATFFASYTTRRLGRR----LTMLIAGIFFIAGVAFNVAAQNL 83
D + L S ++ L +F Y + R GR+ L+ L+ + + AF + N
Sbjct: 125 DAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGV-LTAF---SPNY 180
Query: 84 AMLIVGRILLGCGV-GFANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGT 142
+ +V R+L+G G+ G QAV L E P + R + L Q+ ++G++ LV Y
Sbjct: 181 TVFLVFRLLVGMGIGGIWVQAVVLNT-EFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFI 239
Query: 143 SHIKSQWGWRISLGLAGIPAALLTVGSLLVTDTPNSLIERGRFEEGKAVLRKIRGTDKIE 202
WR +P L + S V ++P LI +GR EE +L++I + +
Sbjct: 240 PD------WRWLQLAVSLPTFLFFLLSWFVPESPRWLISQGRIEEALKILQRIAKINGKK 293
Query: 203 P--EFLEL-VEASRIAKEVKHPFRNLLKRRNRPQLVIAVALQIFQQCTGINAIMFYAPVL 259
E L L +E + + ++ F +L + N + + + + F A +Y VL
Sbjct: 294 LPAEVLSLSLEKDLSSSKKQYSFLDLFRTPNLRKTTLCLMMLWF-----TTAFSYYGLVL 348
Query: 260 FKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRR----MLLLEAGIQMFLSQTVI 315
GG+ L I+G V + + L+++ +D++GRR LL AG+ + L V
Sbjct: 349 D-LGNLGGNIYL-DLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVP 406
Query: 316 AIILGIKVKDHSEDLH---TGFAVLVVIMIC-TFISAFAWSWGPLGWLIPSETFPLETRS 371
DL+ T AVL I F + L +E +P R+
Sbjct: 407 ------------VDLYFLRTALAVLGKFGITSAFQMVY---------LYTAELYPTVVRN 445
Query: 372 AGQSVTVCVNLLFTFVIAQAFLSMLCHFKFGIFLF-FSGWVLIMSCFVFFLLPETKNVPI 430
G V VC + I FL L + L F G L+ F LPETK VP+
Sbjct: 446 LG--VGVCSTMARVGSIISPFLVYLGEKWLFLPLVLFGGLALLAGILTLF-LPETKGVPL 502
Query: 431 EE 432
E
Sbjct: 503 PE 504
|
[Transport and binding proteins, Cations and iron carrying compounds]. Length = 505 |
| >gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily | Back alignment and domain information |
|---|
Score = 80.5 bits (199), Expect = 1e-16
Identities = 72/345 (20%), Positives = 127/345 (36%), Gaps = 45/345 (13%)
Query: 32 LQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVAAQNLAMLIVGRI 91
+ L ++ L A A + R GRR +LI + F G+ + A +L +L+V R+
Sbjct: 34 IGLLLTAFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLLLFASSLWLLLVLRV 93
Query: 92 LLGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTSHIKSQWGW 151
L G G G A +++ P RG L +G L+ + S +GW
Sbjct: 94 LQGLGGGALFPAAAALIADWFPPEERGRALGLLSAGFGLGAALGPLL---GGLLASLFGW 150
Query: 152 RISLGLAGIPAALLTVGSLLVTDTPNSLIERGRFEEGKAVLRKIRGTDKIEPEFLELVEA 211
R + + I A L V + L+ P +R + E
Sbjct: 151 RAAFLILAILALLAAVLAALLLPRPPPESKRPKPAEEAPAPLV----------------- 193
Query: 212 SRIAKEVKHPFRNLLKRRNRPQLVIAVALQIFQQCTGINAIMFYAPVLFKTLGFGGSASL 271
P LL R L++A+ L F A++ Y P+ + LG +
Sbjct: 194 ---------PAWKLLLRDPVLWLLLALLLFGF----AFFALLTYLPLYQEVLGLSALLAG 240
Query: 272 YSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKDHSEDLH 331
+ G + + L+ D++GRR LL A + + L+ +A++
Sbjct: 241 LLLGLAGLLGAIGRLLLGRLSDRLGRRRRLLLALLLLILAALGLALLSLT---------E 291
Query: 332 TGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSV 376
+ +LV +++ F + + P + S+ P E R +
Sbjct: 292 SSLWLLVALLLLGFGAGLVF---PALNALVSDLAPKEERGTASGL 333
|
Length = 346 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 78.9 bits (195), Expect = 6e-16
Identities = 40/141 (28%), Positives = 58/141 (41%), Gaps = 3/141 (2%)
Query: 32 LQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVAAQNLAMLIVGRI 91
L S+ L + A Y + R GRR +L+ + F G A +L +L+VGR
Sbjct: 36 AGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFASSLWLLLVGRF 95
Query: 92 LLGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTSHIKSQWGW 151
LLG G G A ++E P + RG LF +G L L+ + GW
Sbjct: 96 LLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAE---SLGW 152
Query: 152 RISLGLAGIPAALLTVGSLLV 172
R + I LL + L +
Sbjct: 153 RWLFLILAILGLLLALLLLFL 173
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|233168 TIGR00883, 2A0106, metabolite-proton symporter | Back alignment and domain information |
|---|
Score = 65.8 bits (161), Expect = 1e-11
Identities = 71/346 (20%), Positives = 127/346 (36%), Gaps = 57/346 (16%)
Query: 84 AMLIVGRILLGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTS 143
+L++ R++ G +G L+L+E AP RG Q+ +G+L A L S
Sbjct: 97 ILLLLARLIQGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLS 156
Query: 144 HIKS-----QWGWRISLGLAGIPAALLTVGSLLVTDTPNSLIERGRFEEGKAVLRKIRGT 198
++ +WGWRI L L+ L R EE
Sbjct: 157 YLLGDDALLEWGWRIPF-LVSAVLVLI------------GLYLRRNLEE----------- 192
Query: 199 DKIEPEFLELVEASRIAKEVKHPFRNLLKRRNRPQLVIAVALQIFQQCTGINAIMFYAPV 258
P F + E K+ + P L ++R ++ + L I T +
Sbjct: 193 ---TPVFEKAQEK---HKKKRGPIAETL-TKHRKPFLLGLGLVIATTTTFYLITTYLPTY 245
Query: 259 LFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAII 318
L +TLG +++L +++ + ++ +S D++GRR +L+ + L + +
Sbjct: 246 LTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMA 305
Query: 319 LGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTV 378
L D + +++ I GP+G +P E FP E R G S+
Sbjct: 306 L--------LDSGSFTLFFFLVLGMALIGGM--YTGPMGSFLP-ELFPTEVRYTGASLAY 354
Query: 379 CV-NLLF---TFVIAQAFLSMLCHFKFGIFLFFSGWVLIMSCFVFF 420
+ +F IA A ++M + G+ L +
Sbjct: 355 NLAGAIFGGFAPYIAAALVAM------TGDWYAIGYYLAALALIGL 394
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc [Transport and binding proteins, Unknown substrate]. Length = 394 |
| >gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport | Back alignment and domain information |
|---|
Score = 64.3 bits (157), Expect = 4e-11
Identities = 64/284 (22%), Positives = 109/284 (38%), Gaps = 19/284 (6%)
Query: 48 FFASYTTRRLGRRLTMLIAGIFFIAGVAFNVAAQNLAMLIVGRILLGCGVGFANQAVPLF 107
F R+GRR +L + + F A N+ L++ R L G G+G +
Sbjct: 70 LFFGPLADRIGRRRVLLWSILLFSVFTLLCALATNVTQLLILRFLAGLGLGGLMPNLNAL 129
Query: 108 LSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTV 167
+SE AP R RG L IG + + +GWR + GI LL +
Sbjct: 130 VSEYAPKRFRGTAVGLMFCGYPIGAAVGGFL---AGWLIPVFGWRSLFYVGGIAPLLLLL 186
Query: 168 GSLLVTDTPNS---LIERGRFEEGKAVLRKIRGTDKIEPEFLELVEASRIAKEVKHPFRN 224
LL+ P S L+ + R E + ++ I + E + L E + F+
Sbjct: 187 --LLMRFLPESIDFLVSK-RPETVRRIVNAIAPQMQAEAQ-SALPEQKATQGTKRSVFKA 242
Query: 225 LLKRRNRPQLVIAVALQIFQQCTGINAIMFYAPVLFKTLGFGGSASLYSTVITGAVNVLS 284
L + + V+ L G+ + + P L LGF S + + V+
Sbjct: 243 LFQGKTARITVLLWLLYFMLL-VGVYFLTNWLPKLMVELGFSLSLAATGGALFNFGGVIG 301
Query: 285 TLVSIYSVDKVGRR---MLLLEAGIQMFL-----SQTVIAIILG 320
+++ + D++G R +LLL + L + ++LG
Sbjct: 302 SIIFGWLADRLGPRVTALLLLLGAVFAVLVGSTLFSPTLLLLLG 345
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 398 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 59.6 bits (145), Expect = 1e-09
Identities = 39/192 (20%), Positives = 73/192 (38%), Gaps = 16/192 (8%)
Query: 232 PQLVIAVALQIFQQCTGINAIMFYAPVLFK-TLGFGGSASLYSTVITGAVNVLSTLVSIY 290
+L++ +AL F G ++ Y P+ + LG + + + G +L L+
Sbjct: 174 LRLLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGL 233
Query: 291 SVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFA 350
D++GRR LLL G L + ++L + + +LV +++ F FA
Sbjct: 234 LSDRLGRRRLLLLIG---LLLAALGLLLLAL--------APSLALLLVALLLLGFGLGFA 282
Query: 351 WSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHFKF-GIFLFFSG 409
+ SE P E R + L + +L + G+FL +
Sbjct: 283 FPALLTLA---SELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAA 339
Query: 410 WVLIMSCFVFFL 421
L+ + + L
Sbjct: 340 LALLAALLLLLL 351
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 2e-06
Identities = 40/140 (28%), Positives = 62/140 (44%), Gaps = 4/140 (2%)
Query: 34 LFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAG-IFFIAGVAFNVAAQNLAMLIVGRIL 92
L S L G+ + RLGRR +L+ G + G+ A +LA+L+V +L
Sbjct: 215 LLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALLL 274
Query: 93 LGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTSHIKSQWGWR 152
LG G+GFA A+ SE+AP RG + LF ++G L+ + G+
Sbjct: 275 LGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLL---AGLLLDTGGYG 331
Query: 153 ISLGLAGIPAALLTVGSLLV 172
+ A L + LL+
Sbjct: 332 GVFLILAALALLAALLLLLL 351
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|225371 COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 48.0 bits (115), Expect = 6e-06
Identities = 62/321 (19%), Positives = 102/321 (31%), Gaps = 57/321 (17%)
Query: 41 LAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVAAQNLAMLIVGRILLGCGVG-F 99
L + T RL RR +L FI + A + A+L++ R L G G F
Sbjct: 59 LGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSALAPSFAVLLLARALAGLAHGVF 118
Query: 100 ANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTSHIKSQWGWRISLGLAG 159
+ A L + P + L ++F +T+ + V GT + +GWR +
Sbjct: 119 WSIAAALAARLVPPGKRGRALALVF-TGLTLATVLG--VPLGT-FLGQLFGWRATFLAIA 174
Query: 160 IPAALLTVGSLLVTDTPNSLIERGRFEEGKAVLRKIRGTDKIEPEFLELVEASRIAKEVK 219
+ A L + L+ S I+ +
Sbjct: 175 VLALLALLLLWK------------------------------------LLPPSEISGSLP 198
Query: 220 HPFRNLLKRRNRPQLVIAVALQIFQQCTGINAIMFYAPVLFKTLGFGGSASLYSTVITGA 279
P R LL+ RP +++ + + P L GF SA + G
Sbjct: 199 GPLRTLLRLLRRPGVLLGLLATFLFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGI 258
Query: 280 VNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKDHSEDLHTGFAVLVV 339
+ L+ D+ RR L+ L + + L TG A +
Sbjct: 259 AGFIGNLLGGRLADRGPRRALIA-----ALLLLALALLAL----------TFTG-ASPAL 302
Query: 340 IMICTFISAFAWSWGPLGWLI 360
+ F+ FA+S G
Sbjct: 303 ALALLFLWGFAFSPALQGLQT 323
|
Length = 394 |
| >gnl|CDD|129965 TIGR00887, 2A0109, phosphate:H+ symporter | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 2e-05
Identities = 102/450 (22%), Positives = 171/450 (38%), Gaps = 88/450 (19%)
Query: 48 FFASYTTRRLGRR----LTMLIAGIFFIA-GVAFNVAAQNLAMLIVG-RILLGCGVGFAN 101
F + +LGR+ + ++I I +A G++ + +++ + R LG G+G
Sbjct: 74 LFFGWLADKLGRKRVYGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDY 133
Query: 102 QAVPLFLSEIAPTRIRG----------GLNILFQLNVTIGIL--FANLVNY--------G 141
+ SE A + RG G IL V + +L F + + G
Sbjct: 134 PLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTG 193
Query: 142 TSHIKSQWGWRISLGLAGIPAALLTVGSLLVTDTPNSLIERGRFEEGKAVLRKIRGTDKI 201
+ + WRI +G +PA L L + +TP + + E A KI
Sbjct: 194 SCVPAVDYMWRILIGFGAVPALLALYFRLTIPETPRYTADVAKDVEQAASDMSAVLQVKI 253
Query: 202 EPEFLELVEASRIAKEVKHP-------FRNLLKRRNRPQLVIAVALQIFQQCTGINAIMF 254
E E E+ +AS V+ P F + K R+ + ++ A F + I F
Sbjct: 254 EAEPDEVEKAS---TAVEVPKASWSDFFTHFFKWRH-GKHLLGTAGSWF-----LLDIAF 304
Query: 255 YA-----PVLFKTLGFGGSAS---LYSTVITGAV-NVLSTL--------VSIYSVDKVGR 297
Y V+ +G+ A+ Y + AV N++ L V+++ VD +GR
Sbjct: 305 YGVNLNQKVILSAIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGR 364
Query: 298 RMLLLEAGIQM--FLSQTVIAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGP 355
+ IQ+ F TV+ +LG S GF + V + F + F GP
Sbjct: 365 KP------IQLMGFFILTVLFFVLGFAYNHLS---THGFLAIYV--LAQFFANF----GP 409
Query: 356 --LGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHFKFGIFLFFSGWV-- 411
+++P E FP RS ++ + FL + H W+
Sbjct: 410 NATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGH 469
Query: 412 --LIMSCFVF------FLLPETKNVPIEEM 433
I + F+F L+PETK +EE+
Sbjct: 470 VLEIFALFMFLGILFTLLIPETKGKSLEEL 499
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Anions]. Length = 502 |
| >gnl|CDD|222060 pfam13347, MFS_2, MFS/sugar transport protein | Back alignment and domain information |
|---|
Score = 44.1 bits (105), Expect = 1e-04
Identities = 31/170 (18%), Positives = 57/170 (33%), Gaps = 22/170 (12%)
Query: 24 YCKYD--NQGLQ-LFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAG--VAFNV 78
Y Y N GL + +A + + +R G++ T L+ + G + F +
Sbjct: 248 YFTYVLGNAGLFSVLLLIGTIAAILGAPLWPWLAKRFGKKRTFLLGMLLAAIGLVLLFFL 307
Query: 79 AAQNLAMLIVGRILLGCGVGFANQAVPLFLSEIAP-------TRIRGGLNILFQLNVTIG 131
+L + +V +L G G+G A L+++ R G L+ +G
Sbjct: 308 PPGSLWLFLVLVVLAGIGLGLATLLPWAMLADVVDYGEWKTGKRREGITFSLYSFADKLG 367
Query: 132 ILFANLV----------NYGTSHIKSQWGWRISLGLAGIPAALLTVGSLL 171
+ + + I L IPA L + L+
Sbjct: 368 GALGGAIVGLLLAFAGYVANATAQSAAALSGIRLLFTLIPAVLALLALLI 417
|
This family is part of the major facilitator superfamily of membrane transport proteins. Length = 425 |
| >gnl|CDD|233166 TIGR00880, 2_A_01_02, Multidrug resistance protein | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 1e-04
Identities = 29/116 (25%), Positives = 45/116 (38%), Gaps = 3/116 (2%)
Query: 49 FASYTTRRLGRRLTMLIAGIFFIAGVAFNVAAQNLAMLIVGRILLGCGVGFANQAVPLFL 108
+ T R GR+ +L+ F+ A + N+ +LI+ R L G G FA A +
Sbjct: 17 LSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALI 76
Query: 109 SEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAAL 164
++I P RG L + +G L + + GWR I A
Sbjct: 77 ADIYPPEERGVALGLMSAGIALGPLLGPPL---GGVLAQFLGWRAPFLFLAILALA 129
|
Length = 141 |
| >gnl|CDD|130366 TIGR01299, synapt_SV2, synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Score = 41.9 bits (98), Expect = 7e-04
Identities = 43/196 (21%), Positives = 72/196 (36%), Gaps = 27/196 (13%)
Query: 29 NQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIA----GIFFIAGVAFNVAAQNLA 84
+ G + +YL + FF +LGR+ +LI G F F+ Q
Sbjct: 201 DSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVNGFFAF----FSSFVQGYG 256
Query: 85 MLIVGRILLGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTSH 144
+ R+L G G+G A V + +E RG + IG ++A + +
Sbjct: 257 FFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWA--- 313
Query: 145 IKSQWGWRISLGLA-------------GIPAALLTVGSLLVTDTPNSLIERGRFEEGKAV 191
I +GW +G A P + ++P +E G+ +E +
Sbjct: 314 IIPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTFMPESPRFFLENGKHDEAWMI 373
Query: 192 LRKIRGTD---KIEPE 204
L+ I T+ K PE
Sbjct: 374 LKLIHDTNMRAKGHPE 389
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by PFAM model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. Length = 742 |
| >gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 0.001
Identities = 27/98 (27%), Positives = 44/98 (44%), Gaps = 3/98 (3%)
Query: 41 LAGLTATFFASYTTRRLGRRLTMLIAGIFFI---AGVAFNVAAQNLAMLIVGRILLGCGV 97
L G + RLGRR +L+A + I G+A ++ L+V +LLG G
Sbjct: 248 LLGAIGRLLLGRLSDRLGRRRRLLLALLLLILAALGLALLSLTESSLWLLVALLLLGFGA 307
Query: 98 GFANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFA 135
G A+ +S++AP RG + L+ ++G
Sbjct: 308 GLVFPALNALVSDLAPKEERGTASGLYNTAGSLGGALG 345
|
Length = 346 |
| >gnl|CDD|233174 TIGR00893, 2A0114, D-galactonate transporter | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 0.002
Identities = 62/361 (17%), Positives = 109/361 (30%), Gaps = 42/361 (11%)
Query: 26 KYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGV--AFNVAAQNL 83
S+ + F + R G R T +A I GV A
Sbjct: 25 GLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKT--LAVFIVIWGVFTGLQAFAGAY 82
Query: 84 AMLIVGRILLGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTS 143
L + R+LLG + L ++ P R +F +G + +
Sbjct: 83 VSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGW-- 140
Query: 144 HIKSQWGWRISLGLAGIPAALLTVGSLLVT----DTPNSLIERGRFEEGKAVLRKIRGTD 199
I + W+ + + G+ + V L L E ++ +L
Sbjct: 141 -ILIHFSWQWAFIIEGVLGIIWGVLWLKFIPDPPQKAKWLTEEEKYIVVGGLL--AEQQG 197
Query: 200 KIEPEFLELVEASRIAKEVKHPFRNLLKRRNRPQLVIAVALQIFQQCTGINAIMFYAPV- 258
K K+ + LLK R V +AL F G+ + + P
Sbjct: 198 KGPSTPK------------KYQIKELLKDRR----VWGLALGQFLVNIGLGFFLTWFPTY 241
Query: 259 LFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAII 318
L + G + + + G V + ++ D LLL G + ++ AII
Sbjct: 242 LVQERGLSILEAGFMASLPGIVGFIGMILGGRLSD------LLLRRGKSLVFARKT-AII 294
Query: 319 LGIKVKDHSEDLHTGFAVLVVIMICTF--ISAFAWSWGPLGWLIPSETFPLETRSAGQSV 376
G+ + S + V + + F G +GW + S+ P +
Sbjct: 295 AGLVL---SLLMFATNYVNIPYAALALVALGFFGLGAGAIGWALISDNAPGNIAGLTGGL 351
Query: 377 T 377
Sbjct: 352 I 352
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 399 |
| >gnl|CDD|220624 pfam10187, Nefa_Nip30_N, N-terminal domain of NEFA-interacting nuclear protein NIP30 | Back alignment and domain information |
|---|
Score = 37.0 bits (86), Expect = 0.003
Identities = 20/50 (40%), Positives = 25/50 (50%), Gaps = 6/50 (12%)
Query: 185 FEEGKAVLRKIRGTDKIEPEFLELVEASRIAKEVKHPFRNLLKRRNRPQL 234
FEE + + RG D+ E EFL+ VE SR A E K KR +L
Sbjct: 52 FEEKFKLKNQFRGLDEDEVEFLDEVEESRRAAEKK------RKREEAEEL 95
|
This is a the N-terminal 100 amino acids of a family of proteins conserved from plants to humans. The full-length protein has putatively been called NEFA-interacting nuclear protein NIP30, however no reference could be found to confirm this. Length = 99 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 473 | |||
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 100.0 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 100.0 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 100.0 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 100.0 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 100.0 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 100.0 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 100.0 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 100.0 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 100.0 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 100.0 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 100.0 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 100.0 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 100.0 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 100.0 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 100.0 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 100.0 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 100.0 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 100.0 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 100.0 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 100.0 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 100.0 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 100.0 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 100.0 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 100.0 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 100.0 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 100.0 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 100.0 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 100.0 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 100.0 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 100.0 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 100.0 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 100.0 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 100.0 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 100.0 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 100.0 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 100.0 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 100.0 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 100.0 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 100.0 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 100.0 | |
| PRK03699 | 394 | putative transporter; Provisional | 100.0 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 100.0 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 100.0 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 100.0 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 100.0 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 100.0 | |
| PRK11043 | 401 | putative transporter; Provisional | 100.0 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 100.0 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 100.0 | |
| PRK12382 | 392 | putative transporter; Provisional | 100.0 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 100.0 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 100.0 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 100.0 | |
| PRK10504 | 471 | putative transporter; Provisional | 100.0 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 100.0 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 100.0 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 100.0 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 100.0 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 100.0 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 100.0 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 100.0 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 100.0 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 100.0 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 100.0 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.98 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.98 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.98 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 99.97 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.97 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.97 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 99.97 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 99.97 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.97 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.97 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.97 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.97 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 99.96 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.96 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.96 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 99.96 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 99.96 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.96 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.96 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 99.95 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.95 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 99.95 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.95 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.95 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 99.95 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 99.95 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.95 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 99.95 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 99.95 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 99.94 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 99.94 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 99.94 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.93 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 99.91 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 99.91 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 99.91 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 99.9 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 99.89 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 99.88 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.88 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 99.87 | |
| PRK11462 | 460 | putative transporter; Provisional | 99.87 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 99.87 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 99.87 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 99.87 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 99.86 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 99.85 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 99.85 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 99.83 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 99.82 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 99.8 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 99.74 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 99.73 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 99.71 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.7 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 99.66 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 99.65 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 99.62 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 99.57 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 99.53 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.52 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.51 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.51 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 99.5 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.5 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.46 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.45 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.45 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.45 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.44 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 99.43 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 99.41 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.41 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.41 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 99.41 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.41 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.41 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.4 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.39 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.39 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.37 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.37 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.37 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 99.36 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 99.36 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 99.36 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.35 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.35 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 99.34 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.34 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.34 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.34 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.33 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.33 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.32 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.32 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.32 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.31 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 99.3 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.3 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.29 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.29 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 99.29 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 99.28 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.27 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.27 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.27 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.26 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.26 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 99.25 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 99.25 | |
| PRK11043 | 401 | putative transporter; Provisional | 99.25 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 99.25 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 99.24 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 99.24 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 99.23 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 99.23 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.22 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.22 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 99.22 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 99.21 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.21 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.2 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.19 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 99.18 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.18 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.18 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.18 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 99.18 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 99.18 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 99.17 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.16 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.16 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.15 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 99.15 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 99.15 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 99.13 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 99.11 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 99.11 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.1 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 99.08 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 99.07 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 99.06 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.06 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.05 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.05 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 99.05 | |
| KOG3810 | 433 | consensus Micronutrient transporters (folate trans | 99.03 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 99.02 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 99.02 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 99.02 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 99.02 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 99.01 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 99.01 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 99.0 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 98.97 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 98.94 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 98.94 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 98.93 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 98.93 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 98.91 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 98.91 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 98.9 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 98.89 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 98.88 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 98.84 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 98.82 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 98.79 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 98.77 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 98.7 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 98.7 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 98.7 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 98.69 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 98.69 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 98.68 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 98.67 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 98.63 | |
| KOG3574 | 510 | consensus Acetyl-CoA transporter [Inorganic ion tr | 98.61 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 98.6 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 98.59 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 98.58 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 98.56 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 98.55 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 98.52 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 98.48 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 98.45 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 98.44 | |
| PF13000 | 544 | Acatn: Acetyl-coenzyme A transporter 1; InterPro: | 98.4 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 98.38 | |
| PRK11462 | 460 | putative transporter; Provisional | 98.34 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 98.32 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 98.32 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 98.31 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 98.3 | |
| KOG1237 | 571 | consensus H+/oligopeptide symporter [Amino acid tr | 98.25 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 98.18 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 98.16 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 98.15 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 98.06 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 98.05 | |
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 98.02 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 97.96 | |
| COG3202 | 509 | ATP/ADP translocase [Energy production and convers | 97.94 | |
| PF07672 | 267 | MFS_Mycoplasma: Mycoplasma MFS transporter; InterP | 97.87 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 97.81 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 97.76 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 97.76 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 97.67 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 97.59 | |
| KOG1479 | 406 | consensus Nucleoside transporter [Nucleotide trans | 97.48 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 97.3 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 97.27 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 97.22 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 97.14 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 97.12 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 96.67 | |
| PF01733 | 309 | Nucleoside_tran: Nucleoside transporter; InterPro: | 96.64 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 96.31 | |
| KOG1479 | 406 | consensus Nucleoside transporter [Nucleotide trans | 96.18 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 96.17 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 96.07 | |
| KOG1237 | 571 | consensus H+/oligopeptide symporter [Amino acid tr | 95.88 | |
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 95.79 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 95.58 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 95.52 | |
| KOG3097 | 390 | consensus Predicted membrane protein [Function unk | 95.27 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 95.14 | |
| KOG3880 | 409 | consensus Predicted small molecule transporter inv | 95.05 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 94.32 | |
| COG3202 | 509 | ATP/ADP translocase [Energy production and convers | 94.07 | |
| PF13000 | 544 | Acatn: Acetyl-coenzyme A transporter 1; InterPro: | 93.25 | |
| KOG3574 | 510 | consensus Acetyl-CoA transporter [Inorganic ion tr | 93.15 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 92.83 | |
| KOG2601 | 503 | consensus Iron transporter [Inorganic ion transpor | 92.22 | |
| PF03547 | 385 | Mem_trans: Membrane transport protein; InterPro: I | 91.39 | |
| KOG3880 | 409 | consensus Predicted small molecule transporter inv | 90.03 | |
| KOG2881 | 294 | consensus Predicted membrane protein [Function unk | 88.07 | |
| KOG2601 | 503 | consensus Iron transporter [Inorganic ion transpor | 84.63 | |
| KOG4830 | 412 | consensus Predicted sugar transporter [Carbohydrat | 84.38 | |
| COG5336 | 116 | Uncharacterized protein conserved in bacteria [Fun | 81.39 | |
| PF07672 | 267 | MFS_Mycoplasma: Mycoplasma MFS transporter; InterP | 81.18 | |
| COG5336 | 116 | Uncharacterized protein conserved in bacteria [Fun | 81.14 |
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-44 Score=334.12 Aligned_cols=426 Identities=30% Similarity=0.477 Sum_probs=359.4
Q ss_pred chhhHhHhhhhccccCCCCCcccCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHh---
Q 012002 4 FLKKFFPVVYRRTQQGDDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVAA--- 80 (473)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~l~~i~~~~~~~~--- 80 (473)
.+++|+++.+.+.....+.++. -+...+.+.+++.+|.++|++..|+++||+|||..+.++.++..++.+++.++
T Consensus 36 ~i~~f~n~t~~~r~g~~~s~~~--~~~lwS~~vs~f~iG~~~Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~~ 113 (485)
T KOG0569|consen 36 LIKSFINETLIERYGLPLSDST--LDLLWSLIVSIFFIGGMIGSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSKSA 113 (485)
T ss_pred HHHHHHHHHHHHhcCCCCChHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4567777777766653333321 23457889999999999999999999999999999999999988888887765
Q ss_pred hhHHHHHHHHHHHhhhhhhhhhhhhHHHhhcCCCCCchhhHHHHHHHHHHHHHHHHHHhhhccccCCccchHHHHHhhhH
Q 012002 81 QNLAMLIVGRILLGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTSHIKSQWGWRISLGLAGI 160 (473)
Q Consensus 81 ~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~wr~~f~~~~~ 160 (473)
+++.+++++|++.|+..|.......-++.|..|++.||......+.+..+|..++..++.. ..+.+...|++.+.+..+
T Consensus 114 ~~~e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l~-~ilGt~~~W~~l~~~~~i 192 (485)
T KOG0569|consen 114 PSFEMLILGRLIVGLACGLSTGLVPMYLTEISPKNLRGALGTLLQIGVVIGILLGQVLGLP-SLLGTEDLWPYLLAFPLI 192 (485)
T ss_pred hhHHHHHHHHHHHHHHhHHHHHHHHHHHhhcChhhhccHHHHHHHHHHHHHHHHHHHHccH-HhcCCCcchHHHHHHHHH
Confidence 7889999999999999999999999999999999999999999999999999999877431 223345679999999999
Q ss_pred HHHHHHHHhhcccCChhhHHh-hCChHHHHHHHHHHhCCCCchHHHHHHHHHHhhh---hhcccchHHhhcccCc-hhHH
Q 012002 161 PAALLTVGSLLVTDTPNSLIE-RGRFEEGKAVLRKIRGTDKIEPEFLELVEASRIA---KEVKHPFRNLLKRRNR-PQLV 235 (473)
Q Consensus 161 ~~~~~~~~~~~~~e~p~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~-~~~~ 235 (473)
++++..+...++||||||+.. +++.+||++.++..++.++.+.+.++..++.+++ ++++.++.++++++.. +...
T Consensus 193 ~~~~~l~~l~~~PESPk~Ll~~k~~~~~A~~sl~~y~G~~~~~~~~e~~~~e~~~~~~~~~~~~sl~~~~~~~~lR~~~~ 272 (485)
T KOG0569|consen 193 PALLQLALLPFLPESPKYLLIKKGDEEEARKALKFYRGKEDVEAEIEEMLREIEEEELEKKKQISLRQLLKNPTLRRPLL 272 (485)
T ss_pred HHHHHHHHHhcCCCCcchHHHHcCCHHHHHHHHHHHhCCCcchhHHHHHHHHHHHhccccccCCcHHHHhcCcchhHHHH
Confidence 999999999999999999998 8999999999999999987666555443333222 2256678999987554 4456
Q ss_pred HHHHHHHHhhcchhHHHHHhHHHHHHHcCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHhHHhHHHHHHHHHH
Q 012002 236 IAVALQIFQQCTGINAIMFYAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVI 315 (473)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~ 315 (473)
+.+.+....+..+.....+|...++++.|++..++.+.....++..++..+++.++.||+|||++++.+..++.+..+++
T Consensus 273 i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~ 352 (485)
T KOG0569|consen 273 IGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLM 352 (485)
T ss_pred HHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHH
Confidence 66777777788888999999999999999999999999999999999999999999999999999999999988888877
Q ss_pred HHHHhhhhccCCcccchhhHHHHHHHHHHHHHhhhccccccccccccccccccchhhhHHHHHHHHHHHHHHHHHHHHHH
Q 012002 316 AIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSM 395 (473)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (473)
.......... .....+..+.+.+.+...+..+.+|+.+.+.+|++|++.|+.++++....+++..++....+..+
T Consensus 353 ~~~~~l~~~~-----~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l 427 (485)
T KOG0569|consen 353 SIALFLSNSF-----GSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPL 427 (485)
T ss_pred HHHHHHHHHh-----hhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7765432110 11223345677788889999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHhhccCCCCCChHHHHHHH
Q 012002 396 LCHFKFGIFLFFSGWVLIMSCFVFFLLPETKNVPIEEMTERV 437 (473)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (473)
.+..|...++.+.+.+.+..+..+..+||||+|+..|+.++.
T Consensus 428 ~~~~g~~~filF~i~~~~~~i~~~~~lPETkgr~~~eI~~~~ 469 (485)
T KOG0569|consen 428 QNVIGPYVFILFVIPLAIFLIYLYRYLPETKGRTPYEIIEEL 469 (485)
T ss_pred HHHhcchhhHHHHHHHHHHHHHHHHhCcccCCCCHHHHHHHH
Confidence 999988888889999999999999999999999999884443
|
|
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-41 Score=327.21 Aligned_cols=408 Identities=28% Similarity=0.498 Sum_probs=296.1
Q ss_pred CCCCCcccCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHh------------hhHHHH
Q 012002 19 GDDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVAA------------QNLAML 86 (473)
Q Consensus 19 ~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~l~~i~~~~~~~~------------~~~~~l 86 (473)
+...+++++++.+.+++.+++.++..++++++|+++||+|||++++++.++++++.++++++ +.++.+
T Consensus 44 ~~~~~~~~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l 123 (479)
T PRK10077 44 APQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEF 123 (479)
T ss_pred ccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHH
Confidence 44566779999999999999999999999999999999999999999999999999888763 235678
Q ss_pred HHHHHHHhhhhhhhhhhhhHHHhhcCCCCCchhhHHHHHHHHHHHHHHHHHHhhhcc-----ccCCccchHHHHHhhhHH
Q 012002 87 IVGRILLGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTS-----HIKSQWGWRISLGLAGIP 161 (473)
Q Consensus 87 ~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~-----~~~~~~~wr~~f~~~~~~ 161 (473)
+++|+++|++.|...+...++++|++|+++|++++++.+.+..+|.++++.++.... ...+.+|||+.|++.+++
T Consensus 124 ~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~ 203 (479)
T PRK10077 124 VIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIP 203 (479)
T ss_pred HHHHHHHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCChHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999999999887755432 123467999999999888
Q ss_pred HHHHHHHhhcccCChhhHHhhCChHHHHHHHHHHhCCCCchHHHHHHHHHHhhhhhcccchHHhhcccCchhHHHHHHHH
Q 012002 162 AALLTVGSLLVTDTPNSLIERGRFEEGKAVLRKIRGTDKIEPEFLELVEASRIAKEVKHPFRNLLKRRNRPQLVIAVALQ 241 (473)
Q Consensus 162 ~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (473)
.++..+..+++||+|+++..+++.+++++..++..+.+..+...++..+..+.++. .....+.. ............
T Consensus 204 ~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~~~~~~~~ 279 (479)
T PRK10077 204 ALLFLMLLYFVPETPRYLMSRGKQEQAEGILRKIMGNTLATQALQEIKHSLDHGRK---TGGKLLMF-GVGVIVIGVMLS 279 (479)
T ss_pred HHHHHHHHHcCCCCcHHHHHcCCHHHHHHHHHHHcCChhHHHHHHHHHHHHHHhhh---hhhhhcch-hHHHHHHHHHHH
Confidence 88777667789999999888888888777776665443322222221111110000 00111110 111112222223
Q ss_pred HHhhcchhHHHHHhHHHHHHHcCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHhHHhHHHHHHHHHHHHHHhh
Q 012002 242 IFQQCTGINAIMFYAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGI 321 (473)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (473)
.+....++....++.|.+.++.|++...........++..+++.++.++++||+|||+.+..+.....++.+++.....
T Consensus 280 ~~~~~~~~~~~~~~~p~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~- 358 (479)
T PRK10077 280 VFQQFVGINVVLYYAPEIFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFY- 358 (479)
T ss_pred HHHHHhChhHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHh-
Confidence 3333444556677889888889998887777777888999999999999999999999999888887777766654321
Q ss_pred hhccCCcccchhhHHHHHHHHHHHHHhhhccccccccccccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHh-----
Q 012002 322 KVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSML----- 396 (473)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 396 (473)
............+++..++.....|..+.+++|.+|++.|+++.|+.+...+++..+++.+.+.+.
T Consensus 359 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~ 429 (479)
T PRK10077 359 ---------TQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWL 429 (479)
T ss_pred ---------cCcccHHHHHHHHHHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccch
Confidence 111112223333344444444455677888899999999999999999999999999887776554
Q ss_pred -hhhhhh-HHHHHHHHHHHHHHHHHhhccCCCCCChHHHHHHHhccc
Q 012002 397 -CHFKFG-IFLFFSGWVLIMSCFVFFLLPETKNVPIEEMTERVWKQH 441 (473)
Q Consensus 397 -~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (473)
+..++. .+...+.++.+..++.+++.||+|+++.+|. ++..++.
T Consensus 430 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~-~~~~~~~ 475 (479)
T PRK10077 430 VAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEEM-EALWEPE 475 (479)
T ss_pred hhhccCccHHHHHHHHHHHHHHHHHhccccCCCCCHHHH-HHHHhhc
Confidence 334433 3444454555555556667889998888877 5554443
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-42 Score=335.81 Aligned_cols=399 Identities=16% Similarity=0.204 Sum_probs=301.0
Q ss_pred hccccCCCCCcccCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 012002 14 RRTQQGDDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVAAQNLAMLIVGRILL 93 (473)
Q Consensus 14 ~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~l~~i~~~~~~~~~~~~~l~~~r~l~ 93 (473)
.....|.+.++++++..+.+++.++++++++++++++|+++||+|||+++++++++.++++++++++++++.++++|++.
T Consensus 186 is~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~lil~~i~~ll~afa~s~~~llv~R~l~ 265 (742)
T TIGR01299 186 VGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVNGFFAFFSSFVQGYGFFLFCRLLS 265 (742)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 34455677888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhhhhHHHhhcCCCCCchhhHHHHHHHHHHHHHHHHHHhhhccc----------cCCccchHHHHHhhhHHHH
Q 012002 94 GCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTSH----------IKSQWGWRISLGLAGIPAA 163 (473)
Q Consensus 94 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~----------~~~~~~wr~~f~~~~~~~~ 163 (473)
|++.|+..+...+++.|++|+++|++.++++.+++.+|.++++.++..... .....+||+.+++.+++.+
T Consensus 266 G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il~~~G~~~~~g~~~~~~gWR~l~~i~~lp~l 345 (742)
T TIGR01299 266 GFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQMGSAYQFHSWRVFVIVCAFPCV 345 (742)
T ss_pred HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhccccccccccHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999887543221 1123579999999998888
Q ss_pred HHHHHhhcccCChhhHHhhCChHHHHHHHHHHhCCCCch---HHH----HHHHHHHhh------hhhc------------
Q 012002 164 LLTVGSLLVTDTPNSLIERGRFEEGKAVLRKIRGTDKIE---PEF----LELVEASRI------AKEV------------ 218 (473)
Q Consensus 164 ~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~----~~~~~~~~~------~~~~------------ 218 (473)
+.+++.+++||+|+|+..+++.+++.+.++++...+... +.. .+.+..... +++.
T Consensus 346 l~ll~~~~lPESPrwL~~~gr~~eA~~iL~~i~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (742)
T TIGR01299 346 FAIGALTFMPESPRFFLENGKHDEAWMILKLIHDTNMRAKGHPEKVFSVNHIKTIHQEDELIEIESDTGTWYQRCFVRAL 425 (742)
T ss_pred HHHHHHHHcCCCHHHHHHCCCHHHHHHHHHHHhcCCCCCcCchhHHHHHHHHHHhhhhhhhhcccccccchhhcchhhhh
Confidence 877778889999999999999999999999988765421 110 000000000 0000
Q ss_pred ------ccchHHhhcccCchhHHHHHHHHHHhhcchhHHHHHhHHHHHHHc-----------------------------
Q 012002 219 ------KHPFRNLLKRRNRPQLVIAVALQIFQQCTGINAIMFYAPVLFKTL----------------------------- 263 (473)
Q Consensus 219 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------- 263 (473)
..+++++++.+. ++..+.+.+.+++....++++..|.|.++++.
T Consensus 426 ~~~~~~~~~~~~lf~~~~-~~~tl~l~~~wf~~~~~yygl~~w~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 504 (742)
T TIGR01299 426 SEGGGIWGNFLRCFNPEV-REITIKLMGVWFTLSFGYYGLSVWFPDMIKHLQADDYAALTKNFPGDKVAHFSFNFTLENQ 504 (742)
T ss_pred hhhhhHHHHHHHHcCccH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccchhccccccchhhh
Confidence 012445555544 44466677778888889999999999875431
Q ss_pred -------------CCC---------------------C------------------------------------------
Q 012002 264 -------------GFG---------------------G------------------------------------------ 267 (473)
Q Consensus 264 -------------g~~---------------------~------------------------------------------ 267 (473)
|+. .
T Consensus 505 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~ 584 (742)
T TIGR01299 505 IHRGGEYDNDKFIGLKFKSVSFEDSLFEECTFDDVTSSNTFFKNCTFIDTLFENTDFEEYKFIDSEFQNCSFLHNKEGCP 584 (742)
T ss_pred hccccccccchhhcccccccccccccccccceeeccccchhhhccchhhhhccccchhhhhhhhhhhhhccccccCCccC
Confidence 000 0
Q ss_pred ----------cchHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHhHHhHHHHHHHHHHHHHHhhhhccCCcccchhhHHH
Q 012002 268 ----------SASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKDHSEDLHTGFAVL 337 (473)
Q Consensus 268 ----------~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (473)
........+..++.+++.++.++++||+|||+++..+.++.+++.+++.+.. . ...
T Consensus 585 ~~~~~~~~~~~~~~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~------------s-~~~- 650 (742)
T TIGR01299 585 IDFDGDDEGAYMIYFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGN------------S-ESA- 650 (742)
T ss_pred ccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHc------------c-HHH-
Confidence 0012335566788999999999999999999999988888777776665431 1 111
Q ss_pred HHHHHHHHHHhhhccccccccccccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHH
Q 012002 338 VVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHFKFGIFLFFSGWVLIMSCF 417 (473)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (473)
.++..++.. ++..+..+....+++|++|++.|++++|+.+....+|++++|.+.+.+.+.. ...++.+.+++.+++++
T Consensus 651 ll~~~~l~g-~~~~~~~~~~~a~~aEl~Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~~-~~~pf~i~a~~lll~~l 728 (742)
T TIGR01299 651 MIALLCLFG-GLSIAAWNALDVLTVELYPSDKRATAFGFLNALCKAAAVLGILIFGSFVGIT-KAAPILFASAALACGGL 728 (742)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHHHHH
Confidence 222222222 2222333456778899999999999999999999999999999999887654 34444445555555566
Q ss_pred HHhhccCCCCCC
Q 012002 418 VFFLLPETKNVP 429 (473)
Q Consensus 418 ~~~~~~~~~~~~ 429 (473)
+..++||++++.
T Consensus 729 l~~~LPET~~~~ 740 (742)
T TIGR01299 729 LALKLPDTRGQV 740 (742)
T ss_pred HHHhCCCCcccc
Confidence 666779988764
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-42 Score=331.47 Aligned_cols=396 Identities=18% Similarity=0.229 Sum_probs=283.6
Q ss_pred ccCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhh------HHHHHHHHHHHhhhhh
Q 012002 25 CKYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVAAQN------LAMLIVGRILLGCGVG 98 (473)
Q Consensus 25 ~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~l~~i~~~~~~~~~~------~~~l~~~r~l~G~~~~ 98 (473)
.+.++.+.+++.+.+.+++.++++++|+++||+|||+++.++.+++.+++++++++++ ++.++++|+++|++.|
T Consensus 51 ~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g 130 (502)
T TIGR00887 51 GPLPSSVSAAVNGSASIGTLAGQLFFGWLADKLGRKRVYGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIG 130 (502)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHh
Confidence 3556778899999999999999999999999999999999999999999999998865 7899999999999999
Q ss_pred hhhhhhhHHHhhcCCCCCchhhHHHHHHHHHHHHHHHHHHhhhccc-c-------------------CCccchHHHHHhh
Q 012002 99 FANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTSH-I-------------------KSQWGWRISLGLA 158 (473)
Q Consensus 99 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~-~-------------------~~~~~wr~~f~~~ 158 (473)
...+....+++|++|+++|++++++.+....+|.++++.++..... . ...++||++|.+.
T Consensus 131 ~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~ 210 (502)
T TIGR00887 131 GDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFG 210 (502)
T ss_pred hhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHHHHHHHH
Confidence 9999999999999999999999999999999999999887643221 1 1135899999999
Q ss_pred hHHHHHHHHHhhcccCChhhHHhhCChH-HHHHHHHHHhCCCCchHHHHHHHHHHhhhhhcccchHHhhcccC---chhH
Q 012002 159 GIPAALLTVGSLLVTDTPNSLIERGRFE-EGKAVLRKIRGTDKIEPEFLELVEASRIAKEVKHPFRNLLKRRN---RPQL 234 (473)
Q Consensus 159 ~~~~~~~~~~~~~~~e~p~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 234 (473)
++++++..+..+++||||+|+..+++.+ ++++.+++....+..++ .++.++.+++++..+.+++++++.+. .++.
T Consensus 211 ~ip~~i~~~~~~~lpESpr~l~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 289 (502)
T TIGR00887 211 AVPALLALYFRLTIPETPRYTADVAKDVEQAASDMSAVLQVKIEAE-PDEVEKASTAVEVPKASWSDFFTHFFKWRHGKH 289 (502)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHhCcchHHHHHHHHHHhccccccC-cccccchhccccchhhhHHHHHHHHhhhHHHHH
Confidence 8888887777888999999999887764 46665665543321111 01111011111111235777776422 2222
Q ss_pred HHHHHHHHHhhcchhHHHHHhHHHHHHHcCCCCcchHH------------HHHHHHHHHHHHHHHHHHHHhhcCcchhHh
Q 012002 235 VIAVALQIFQQCTGINAIMFYAPVLFKTLGFGGSASLY------------STVITGAVNVLSTLVSIYSVDKVGRRMLLL 302 (473)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~------------~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~ 302 (473)
.+.....++.....++....+.|.++++.|++...++. ......++.+++.++.++++||+|||+.+.
T Consensus 290 ~~~~~~~~~~~~~~~y~~~~~~p~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l~ 369 (502)
T TIGR00887 290 LLGTAGSWFLLDIAFYGVNLNQKVILSAIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQL 369 (502)
T ss_pred HHHHHHHHHHHHHHHHccccccHHHHHHHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHH
Confidence 33333344444445566677788888888887653221 233445567778899999999999999988
Q ss_pred HHhHHHHHHHHHHHHHHhhhhccCCcccchhhHHHHHHHHHHHHHhhhccccccccccccccccccchhhhHHHHHHHHH
Q 012002 303 EAGIQMFLSQTVIAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNL 382 (473)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 382 (473)
.+..+..++..++...... ...... ....+.....+..+..++.+.+.+|.+|++.|+++.|+.+..++
T Consensus 370 ~~~~~~~~~~~~l~~~~~~---------~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~ 438 (502)
T TIGR00887 370 MGFFILTVLFFVLGFAYNH---------LSTHGF--LAIYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGK 438 (502)
T ss_pred HHHHHHHHHHHHHHHHHHh---------cchhHH--HHHHHHHHHHHhcCCCchhhhhhhccCchhHHHHHHHHHHHHhh
Confidence 8877777666555543210 000111 11122222233445556778888999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhh----------hh-hHHHHHHHHHHHHHHHHHhhccCCCCCChHHH
Q 012002 383 LFTFVIAQAFLSMLCHF----------KF-GIFLFFSGWVLIMSCFVFFLLPETKNVPIEEM 433 (473)
Q Consensus 383 ~~~~~~~~~~~~~~~~~----------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (473)
+++++++.+.+.+.+.. +. ..++++++++++. .+..+++||+++++.+|+
T Consensus 439 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~i~~~~lpEt~~~~leei 499 (502)
T TIGR00887 439 AGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFLG-ILFTLLIPETKGKSLEEL 499 (502)
T ss_pred hHHHHHHHHhhhhhccccccccccccccchHHHHHHHHHHHHH-HHHheEeccCCCCCHHhh
Confidence 99999999999988742 22 2344444444444 445567899999988776
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-39 Score=310.46 Aligned_cols=405 Identities=40% Similarity=0.675 Sum_probs=337.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhhhhhhHHHh
Q 012002 30 QGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVAAQNLAMLIVGRILLGCGVGFANQAVPLFLS 109 (473)
Q Consensus 30 ~~~~~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~l~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~ 109 (473)
.+.+|+.+...++..++++++|+++|++|||+.++++.+++.++.+++++++|+++++++|+++|+|.|........+++
T Consensus 89 ~~~s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~~piy~s 168 (513)
T KOG0254|consen 89 VRQGLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALAPSWYQLIVGRILTGLGVGGASVLAPVYIS 168 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccchhhhhhcchhhHh
Confidence 46699999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCchhhHHHHHHHHHHHHHHHHHHhhhccccCCccchHHHHHhhhHHHHHHHHHhhcccCChhhHHhhCChHHHH
Q 012002 110 EIAPTRIRGGLNILFQLNVTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVGSLLVTDTPNSLIERGRFEEGK 189 (473)
Q Consensus 110 ~~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~ 189 (473)
|..|++.||...+..+....+|..++..++...... . ++||..+.+..+++++..+..+++||+|+|+.++++.++++
T Consensus 169 Eiap~~~RG~l~~~~~l~~~~Gi~~~~~~~~~~~~~-~-~~Wr~~~~~~~i~~~~~~~~~~~~pesp~~L~~~g~~~~a~ 246 (513)
T KOG0254|consen 169 EIAPAHIRGTLVSLYQLFITIGILLGYCINYGTSKV-Y-AGWRIPLGLALIPAVILALGMLFLPESPRWLIEKGRLEEAK 246 (513)
T ss_pred hcCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhccC-C-ccHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHcCChHHHH
Confidence 999999999999999999999999997775555443 2 68999999999999998888888999999999999999999
Q ss_pred HHHHHHhCC--CCchHHHHHHHHHHhhh---hhcccchHHhhcccCchhHHHHHHHHHHhhcchhHHHHHhHHHHHHHcC
Q 012002 190 AVLRKIRGT--DKIEPEFLELVEASRIA---KEVKHPFRNLLKRRNRPQLVIAVALQIFQQCTGINAIMFYAPVLFKTLG 264 (473)
Q Consensus 190 ~~~~~~~~~--~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 264 (473)
+.+++.++. .+.+.+..+.+.....+ .+.+..+.++++....++..+...+..+.+..++....+|.+.+++..|
T Consensus 247 ~~l~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g 326 (513)
T KOG0254|consen 247 RSLKRLRGLSPEDVEVELELLKIKLLVEAEVAEGKASWGELFSPKVRKRLIIGLLLQLFQQLTGINYVFYYSTTIFKSAG 326 (513)
T ss_pred HHHHHHhCCCCcchHHHHHHHHHHHHHhhhcccccccHHHhcCcchHHHHHHHHHHHHHHHHhCCceEEeehHHHHHhcC
Confidence 999999984 33333333333111111 1112246677775667777888899999999999999999999999988
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHhHHhHHHHHHHHHHHHHHhhhhccCCcccchhhHHHHHHHHHH
Q 012002 265 FGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKDHSEDLHTGFAVLVVIMICT 344 (473)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (473)
.+... .......++..+++.+++.++.||+|||+.+..+...+.++.++++........... ......++.+...++
T Consensus 327 ~~~~~-~~~~~~~~~v~~~~t~~~~~lvd~~gRr~lll~s~~~m~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 403 (513)
T KOG0254|consen 327 LKSDT-FLASIILGVVNFLGTLVATYLVDRFGRRKLLLFGAAGMSICLVILAVVGVFALYYPN--SSKGAGWLAIVFLCL 403 (513)
T ss_pred CCCch-HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHHhccCCC--cccchhHHHHHHHHH
Confidence 77554 556677788888888999999999999999999999999999888877654322110 133456777888888
Q ss_pred HHHhhhccccccccccccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhh-hhHHHHHHHHHHHHHH-HHHhhc
Q 012002 345 FISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHFK-FGIFLFFSGWVLIMSC-FVFFLL 422 (473)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~ 422 (473)
+...+..+..++.|.+.+|.+|.+.|+.+.++....+++.+.+....+....+..+ ...++.+.+++.+... ..++++
T Consensus 404 ~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v~~~~~~~~~~~~~~~~f~~f~~~~~~~~~~fv~~~~ 483 (513)
T KOG0254|consen 404 FIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLISFFFPFITEALGIGGTFGYFGGICLLSLIIFVFFFV 483 (513)
T ss_pred HHHHHhcccccchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHheEEc
Confidence 89999999999999999999999999999999999999999888777777776665 5666777777777766 788899
Q ss_pred cCCCCCChHHHHHHHhcc
Q 012002 423 PETKNVPIEEMTERVWKQ 440 (473)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~ 440 (473)
||+|+++.+|+ ++..++
T Consensus 484 pETkg~sleei-~~~~~~ 500 (513)
T KOG0254|consen 484 PETKGLTLEEI-NELFEE 500 (513)
T ss_pred ccCCCCcHHHH-HHHHHc
Confidence 99999999998 554443
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-39 Score=313.47 Aligned_cols=382 Identities=14% Similarity=0.166 Sum_probs=257.5
Q ss_pred hccccCCCCCcccCCCch-hHH-----HHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHH--
Q 012002 14 RRTQQGDDSNYCKYDNQG-LQL-----FTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVAAQNLAM-- 85 (473)
Q Consensus 14 ~~~~~~~~~~~~~~s~~~-~~~-----~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~l~~i~~~~~~~~~~~~~-- 85 (473)
.....|.+.++++.+.++ .++ +.++.++++.++++++|+++||+|||+++.+++++++++++++++++|++.
T Consensus 35 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~i~~~~~a~~~~~~~~g 114 (490)
T PRK10642 35 YGFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKYGRQKILAITIVIMSISTFCIGLIPSYATIG 114 (490)
T ss_pred HHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhcccHHHHH
Confidence 334455666676544432 222 257788999999999999999999999999999999999999999999875
Q ss_pred ------HHHHHHHHhhhhhhhhhhhhHHHhhcCCCCCchhhHHHHHHHHHHHHHHHHHHhhhccc-c----CCccchHHH
Q 012002 86 ------LIVGRILLGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTSH-I----KSQWGWRIS 154 (473)
Q Consensus 86 ------l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~-~----~~~~~wr~~ 154 (473)
++++|+++|++.|+.++...++++|++|+++|+++.++...+..+|.++++.+...... + ..++|||+.
T Consensus 115 ~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~~~~~~~gWR~~ 194 (490)
T PRK10642 115 IWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAGVVVLISTIVGEANFLDWGWRIP 194 (490)
T ss_pred HHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhcCccHHHH
Confidence 88999999999999999999999999999999999999999888898888866433221 1 235899999
Q ss_pred HHhhhHHHHHHHHHhhcccCChhhHHhhCChHHHHHHHHHHhCCCCchHHHHHHHHHHhhhhhcccchHHhhcccCchhH
Q 012002 155 LGLAGIPAALLTVGSLLVTDTPNSLIERGRFEEGKAVLRKIRGTDKIEPEFLELVEASRIAKEVKHPFRNLLKRRNRPQL 234 (473)
Q Consensus 155 f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (473)
|++.+++.++..++..++||+|++...+++.++..+ +...++++.+++++++. ..+.
T Consensus 195 f~i~~~~~l~~~~~~~~~~esp~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~-~~~~- 251 (490)
T PRK10642 195 FFIALPLGIIGLYLRHALEETPAFQQHVDKLEQGDR---------------------EGLQDGPKVSFKEIATK-HWRS- 251 (490)
T ss_pred HHHHHHHHHHHHHHHHcCCCChhHHHHHHhhhhhcc---------------------ccccccccCCHHHHHHH-hHHH-
Confidence 999887766655556678999986533222111000 00001123345666654 2222
Q ss_pred HHHHHHHHHhhcchhHHHHHhHHHHHHH-cCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHhHHhHHHHHHHH
Q 012002 235 VIAVALQIFQQCTGINAIMFYAPVLFKT-LGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQT 313 (473)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~ 313 (473)
+.......++....++....|.|.++++ +|++..+.+.......++.+++.++.|+++||+|||+.+..+.+...+...
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~ 331 (490)
T PRK10642 252 LLTCIGLVIATNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAI 331 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 2222233334445667778889988854 788887777777778888999999999999999999988776654333322
Q ss_pred HHHHHHhhhhccCCcccchhhHHHHHHHHHHHHHhhhccccccccccccccccccchhhhHHHHHHHHHHHHHHHHHHHH
Q 012002 314 VIAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFL 393 (473)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (473)
...... .............+......... .....+..|.+|++.|+++.|+.+.....++.++|.+.+
T Consensus 332 ~~~~~~-----------~~~~~~~~~~~~~~~g~~~~~~~-g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g 399 (490)
T PRK10642 332 PAFILI-----------NSNVIGLIFAGLLMLAVILNCFT-GVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAA 399 (490)
T ss_pred HHHHHH-----------hCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 222111 11111111111111111111111 233455678999999999999877777788889999999
Q ss_pred HHhhhhh-hhHHHHHHHHHHHHHHHHHhhccCCCCCCh
Q 012002 394 SMLCHFK-FGIFLFFSGWVLIMSCFVFFLLPETKNVPI 430 (473)
Q Consensus 394 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (473)
.+.+..+ +.....+..+..+++++..+++||++++..
T Consensus 400 ~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~pes~~~~~ 437 (490)
T PRK10642 400 WLVESTQNLMMPAYYLMVVAVIGLITGVTMKETANRPL 437 (490)
T ss_pred HHHHHhCCchHHHHHHHHHHHHHHHHHHHhccccCCCC
Confidence 8887643 233333333344444455556788766543
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-39 Score=316.82 Aligned_cols=388 Identities=19% Similarity=0.281 Sum_probs=285.5
Q ss_pred cccCCCCCcccCC---CchhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 012002 16 TQQGDDSNYCKYD---NQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVAAQNLAMLIVGRIL 92 (473)
Q Consensus 16 ~~~~~~~~~~~~s---~~~~~~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~l~~i~~~~~~~~~~~~~l~~~r~l 92 (473)
...+.+.+|+|++ ..+.+++.+++.+++.++++++|+++||+|||++++++.++.+++.++++++++++.++++|++
T Consensus 110 ~~~~~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l 189 (505)
T TIGR00898 110 TFSSTIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLL 189 (505)
T ss_pred cccccEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 3567889999999 8999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhhhhhhhhHHHhhcCCCCCchhhHHHHHHHHHHHHHHHHHHhhhccccCCccchHHHHHhhhHHHHHHHHHhhcc
Q 012002 93 LGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVGSLLV 172 (473)
Q Consensus 93 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~ 172 (473)
.|++.+...+...+++.|++|+++|+++.++...+..+|.++++.++.... +||+.|++.+++.++..+..+++
T Consensus 190 ~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~------~wr~~~~~~~i~~~~~~~~~~~~ 263 (505)
T TIGR00898 190 VGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIP------DWRWLQLAVSLPTFLFFLLSWFV 263 (505)
T ss_pred HHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhh------HHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999865432 39999999999888877777889
Q ss_pred cCChhhHHhhCChHHHHHHHHHHhCCCCchHH--HHHHH-HHHhhhhhcccchHHhhcccCchhHHHHHHHHHHhhcchh
Q 012002 173 TDTPNSLIERGRFEEGKAVLRKIRGTDKIEPE--FLELV-EASRIAKEVKHPFRNLLKRRNRPQLVIAVALQIFQQCTGI 249 (473)
Q Consensus 173 ~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (473)
||+|+|+..+++.+++.+.+++..+.+..... ..+.. ++..++++.+.+++++++++..+...+.....++.....+
T Consensus 264 ~esp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 343 (505)
T TIGR00898 264 PESPRWLISQGRIEEALKILQRIAKINGKKLPAEVLSLSLEKDLSSSKKQYSFLDLFRTPNLRKTTLCLMMLWFTTAFSY 343 (505)
T ss_pred CCChHHHHHCCCHHHHHHHHHHHHHHcCCCCCHHHHhhhhhhhhhhccCCCcHHHHhCChHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988888776554432211 11111 1111111123467788887776655555444444332222
Q ss_pred HHHHHhHHHHHHHcCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHhHHhHHHHHHHHHHHHHHhhhhccCCcc
Q 012002 250 NAIMFYAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKDHSED 329 (473)
Q Consensus 250 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (473)
+.. +......+.+ ........++..+++.++.+++.||+|||+.+..+.++.+++.+++...
T Consensus 344 ~~~----~~~~~~~~~~---~~~~~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~----------- 405 (505)
T TIGR00898 344 YGL----VLDLGNLGGN---IYLDLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFV----------- 405 (505)
T ss_pred HHH----hccccccCCC---hHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHc-----------
Confidence 222 2223334443 2344556678888999999999999999999988877777776655443
Q ss_pred cchhhHHHHHHHHHHHHHhhhccccccccccccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHH
Q 012002 330 LHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHFKFGIFLFFSG 409 (473)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (473)
+....+......++...+. ....+..+.+.+|.+|++.|+++.|+.+....+|+.++|.+.+ +.+ .+....+.+.+
T Consensus 406 -~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~~-~~~-~~~~~~~~~~~ 481 (505)
T TIGR00898 406 -PVDLYFLRTALAVLGKFGI-TSAFQMVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLVY-LGE-KWLFLPLVLFG 481 (505)
T ss_pred -CCCchHHHHHHHHHHHHHH-HHHHHHHHHHhcccccHHHHhhhHhHHHHHHHHHHHHHhHHHH-HHH-HHHhhHHHHHH
Confidence 1111122222222222222 2222455677899999999999999999999999999999988 443 33333334444
Q ss_pred HHHHHHHHHHhhccCCCCCChH
Q 012002 410 WVLIMSCFVFFLLPETKNVPIE 431 (473)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~ 431 (473)
+..+++.+..+++||+++++++
T Consensus 482 ~~~~~~~~~~~~lpet~~~~l~ 503 (505)
T TIGR00898 482 GLALLAGILTLFLPETKGVPLP 503 (505)
T ss_pred HHHHHHHHHHHcCcCCCCCCCC
Confidence 4444445556678888877654
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-38 Score=306.03 Aligned_cols=410 Identities=37% Similarity=0.633 Sum_probs=297.5
Q ss_pred ccCCCCCcccCC--------CchhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhh---hHHH
Q 012002 17 QQGDDSNYCKYD--------NQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVAAQ---NLAM 85 (473)
Q Consensus 17 ~~~~~~~~~~~s--------~~~~~~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~l~~i~~~~~~~~~---~~~~ 85 (473)
..+.+..+++.+ ..+.+++.+++.++..++++++|+++||+|||++++++.++++++.+++.+.. +++.
T Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (481)
T TIGR00879 50 ALALPAFEFKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFALSVEM 129 (481)
T ss_pred hhhcHHHHHhcCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhccccchHH
Confidence 344455555555 89999999999999999999999999999999999999999999999996643 4568
Q ss_pred HHHHHHHHhhhhhhhhhhhhHHHhhcCCCCCchhhHHHHHHHHHHHHHHHHHHhhhccccCCccchHHHHHhhhHHHHHH
Q 012002 86 LIVGRILLGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALL 165 (473)
Q Consensus 86 l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~ 165 (473)
++++|+++|++.+...+....++.|++|+++|++++++.+.+..+|.++++.++.......+..+||+.|++.++..++.
T Consensus 130 ~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~ 209 (481)
T TIGR00879 130 LIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPLGLQLIPAGLL 209 (481)
T ss_pred HHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999511144445679999999977777766
Q ss_pred HHHhhcccCChhhHHhhCChHHHHHHHHHHhCCCCchHHHHHHHHH-----HhhhhhcccchHHhhcccC--chhHHHHH
Q 012002 166 TVGSLLVTDTPNSLIERGRFEEGKAVLRKIRGTDKIEPEFLELVEA-----SRIAKEVKHPFRNLLKRRN--RPQLVIAV 238 (473)
Q Consensus 166 ~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 238 (473)
.+..+++||+|++...+++.+++.+..++..+.+..+.+..+..+. ..+.+..+..+.+.++..+ .++.++..
T Consensus 210 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (481)
T TIGR00879 210 FLGLFFLPESPRWLVGKGRVEEARKSLARLRGTSGEDKELLDELELIDIKRSIEKRSVQPSWGSLFSSTRRIRRRLFLGV 289 (481)
T ss_pred HHHHhcCCCChHHHHHcCChHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHhhccccHHHHHhcCchhHHHHHHHH
Confidence 6667789999988777777666665555544433322221111000 0011111222344443222 34445555
Q ss_pred HHHHHhhcchhHHHHHhHHHHHHHcCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHhHHhHHHHHHHHHHHHH
Q 012002 239 ALQIFQQCTGINAIMFYAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAII 318 (473)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (473)
.+..+...........+.|.+.++.|++..+.+.......++.+++.++.++++||++||+.+..+..+..++.+++...
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (481)
T TIGR00879 290 VLQWFQQFTGINAIMYYSPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGIL 369 (481)
T ss_pred HHHHHHHHhCCeehHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence 56566555555667788899988999999888888889999999999999999999999999988877766666555532
Q ss_pred HhhhhccCCcccchhhHHHHHHHHHHHHHhhhccccccccccccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 012002 319 LGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCH 398 (473)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (473)
...... ..........+....++..++..+..+....+..|.+|++.|+++.|+.+...++++++++.+.+.+.++
T Consensus 370 ~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~ 445 (481)
T TIGR00879 370 GASFVT----GSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLES 445 (481)
T ss_pred hhcccC----CcccchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 210000 0000012333334444455555566677778889999999999999999999999999999999999988
Q ss_pred hhhhHHHH-HHHHHHHHHHHHHhhccCCCCCCh
Q 012002 399 FKFGIFLF-FSGWVLIMSCFVFFLLPETKNVPI 430 (473)
Q Consensus 399 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 430 (473)
.++...+. .++++++.+++.+++.+|+++++.
T Consensus 446 ~~~~~~f~~~~~~~~~~~i~~~~~~~~~~~~~~ 478 (481)
T TIGR00879 446 IGVGGVFIFFGGLNVLGLIFVYFFLPETKGRTL 478 (481)
T ss_pred cCccceehhHHHHHHHHHHHHheecccCCCCCh
Confidence 77655444 444444455555566677666544
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-39 Score=286.35 Aligned_cols=386 Identities=15% Similarity=0.105 Sum_probs=290.0
Q ss_pred hHhHhhhhccccCCCCCcccCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 012002 7 KFFPVVYRRTQQGDDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVAAQNLAML 86 (473)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~l~~i~~~~~~~~~~~~~l 86 (473)
.|+.+.-++...|.+.++.++|.+|+|++.|.+++.|.++.++.|.++||.++|+.+..++++.++.+++++++++.+.+
T Consensus 41 fYl~RknF~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLilsai~nil~Gfs~s~~~~ 120 (448)
T COG2271 41 FYLTRKNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILSAIVNILFGFSPSLFLF 120 (448)
T ss_pred HHHHHHhHhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHHHHHHHHHHHHhhhhHHHHH
Confidence 34444455667789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhhhhhhhhhHHHhhcCCCCCchhhHHHHHHHHHHHHHHHHHHhhhccccCCccchHHHHHhhhHHHHHHH
Q 012002 87 IVGRILLGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLT 166 (473)
Q Consensus 87 ~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~ 166 (473)
.++-+++|..+|...|++...++.|++++|||+..++++++.++|..+.|++..+ +.+..+.+||..|++.++++++..
T Consensus 121 ~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~l-a~~~~~~~w~~~f~~pgiiaiiva 199 (448)
T COG2271 121 AVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALL-AFFAFHGGWRAAFYFPGIIAIIVA 199 (448)
T ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHH-HHHHhccchhHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999432 666667799999999999998887
Q ss_pred HHh-hcccCChhhHHhhCChHHHHHHHHHHhCCCCchHHHHHHHHH-HhhhhhcccchHHhh-cccCchhHHHHHHHHHH
Q 012002 167 VGS-LLVTDTPNSLIERGRFEEGKAVLRKIRGTDKIEPEFLELVEA-SRIAKEVKHPFRNLL-KRRNRPQLVIAVALQIF 243 (473)
Q Consensus 167 ~~~-~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 243 (473)
++. +..+|+|+..- -++.++..++..+. .++++.+.-+.++++ +...+.+.+|.+++..+
T Consensus 200 l~~~~~~rd~Pqs~G-----------------LP~ie~~~~d~~e~~~~~~~~~~ls~~~i~~~YVL~Nk~iW~la~a~v 262 (448)
T COG2271 200 LILLFLLRDRPQSEG-----------------LPPIEEYRGDPLEIYEEEKENEGLTAWQIFVKYVLKNKLIWLLALANV 262 (448)
T ss_pred HHHHHHhCCCccccC-----------------CCCHHHhhcCchhhhhhhccCCCccHHHHHHHHHHcChHHHHHHHHHH
Confidence 774 55788885321 11111111111111 111111112333332 33333444888888888
Q ss_pred hhcchhHHHHHhHHHHHHH-cCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhc--CcchhHhHHhHHHHHHHHHHHHHHh
Q 012002 244 QQCTGINAIMFYAPVLFKT-LGFGGSASLYSTVITGAVNVLSTLVSIYSVDKV--GRRMLLLEAGIQMFLSQTVIAIILG 320 (473)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (473)
+....-+.+..|.|.|+.+ .|+|..++....+.+-.++++|.+++|+++||+ |||....+.+.+.....++.....
T Consensus 263 fvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~i~~~~~~~w~~- 341 (448)
T COG2271 263 FVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLLITASLVLYWLA- 341 (448)
T ss_pred HHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHcC-
Confidence 8888889999999988865 999999999999999999999999999999996 566665544333333322222211
Q ss_pred hhhccCCcccchhhHHHHHHHHHHHHHhhhccccccccccccccccccchhhhHHHHHHHHHH-HHHHHHHHHHHHhhhh
Q 012002 321 IKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLL-FTFVIAQAFLSMLCHF 399 (473)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 399 (473)
+.. .........+..+++..+...+.-..+.|..|++..|++.|+...++++ |...+....|++.|.+
T Consensus 342 ----------~~~-~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~~ 410 (448)
T COG2271 342 ----------PNG-SYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKAAGTATGFVGLFAYLIGAALAGLPLGYIADTW 410 (448)
T ss_pred ----------CCc-cHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhhccchhchhhhHHHHhhHHhcCCcceeeEecC
Confidence 222 2233333333333333343334455667999999999999999999999 8888889999999988
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhc
Q 012002 400 KFGIFLFFSGWVLIMSCFVFFLL 422 (473)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~ 422 (473)
+|...+++..++.+++.+++...
T Consensus 411 gW~g~Fi~~~~~a~l~~lll~~~ 433 (448)
T COG2271 411 GWDGGFIVLSIAALLAILLLLPV 433 (448)
T ss_pred CCcchHHHHHHHHHHHHHHHHHH
Confidence 87766666555555555544433
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-37 Score=277.75 Aligned_cols=353 Identities=18% Similarity=0.166 Sum_probs=275.0
Q ss_pred hhccccCCCCCcccCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 012002 13 YRRTQQGDDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVAAQNLAMLIVGRIL 92 (473)
Q Consensus 13 ~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~l~~i~~~~~~~~~~~~~l~~~r~l 92 (473)
....+.|++++|+|+|..+.|++.|.|.+++.+++++...+.||+.||++++..+.++.++++++++++||+.++++|++
T Consensus 31 v~~gLLp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi~~n~l~alAp~f~~Ll~aR~~ 110 (394)
T COG2814 31 VPVGLLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSALAPSFAVLLLARAL 110 (394)
T ss_pred HHHhchHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 34456789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhhhhhhhhHHHhhcCCCCCchhhHHHHHHHHHHHHHHHHHHhhhccccCCccchHHHHHhhhHHHHHHHHH-hhc
Q 012002 93 LGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVG-SLL 171 (473)
Q Consensus 93 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~-~~~ 171 (473)
.|++.|..++...++.++..|+++|++++++...+..++.++|.++ ...+.+.+|||..|++.+.++++..+. +..
T Consensus 111 ~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPL---Gt~ig~~~GWR~~F~~ia~l~ll~~~~~~~~ 187 (394)
T COG2814 111 AGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPL---GTFLGQLFGWRATFLAIAVLALLALLLLWKL 187 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccH---HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999 555556789999999999999888777 456
Q ss_pred ccCChhhHHhhCChHHHHHHHHHHhCCCCchHHHHHHHHHHhhhhhcccc---hHHhhcccCchhHHHHHHHHHHhhcch
Q 012002 172 VTDTPNSLIERGRFEEGKAVLRKIRGTDKIEPEFLELVEASRIAKEVKHP---FRNLLKRRNRPQLVIAVALQIFQQCTG 248 (473)
Q Consensus 172 ~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (473)
+| |+. ..++.+.+ ..+.+|++. ++...+..++...+
T Consensus 188 lP--~~~-----------------------------------~~~~~~~~~~~~~~~l~~p~----v~~~l~~t~l~~~g 226 (394)
T COG2814 188 LP--PSE-----------------------------------ISGSLPGPLRTLLRLLRRPG----VLLGLLATFLFMTG 226 (394)
T ss_pred CC--Ccc-----------------------------------CCCCCCcchhHHHHHhcCch----HHHHHHHHHHHHcc
Confidence 77 210 00111222 333444444 44444444444455
Q ss_pred hHHHHHhH-HHHHHHcCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHhHHhHHHHHHHHHHHHHHhhhhccCC
Q 012002 249 INAIMFYA-PVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKDHS 327 (473)
Q Consensus 249 ~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (473)
.+...+|. |.+.+..|++....++....++++.++|+.++|++.|| +.|+.+.....+..+....+.+..
T Consensus 227 ~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~~~~l~a~~~l~l~~~~-------- 297 (394)
T COG2814 227 HFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPRRALIAALLLLALALLALTFTG-------- 297 (394)
T ss_pred hhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cchhHHHHHHHHHHHHHHHHHHhc--------
Confidence 55555555 55555699999999999999999999999999999999 888888877777777766665542
Q ss_pred cccchhhHHHHHHHHHHHHHhhhccccccccccccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHH
Q 012002 328 EDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHFKFGIFLFF 407 (473)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (473)
...+..+....+........ ........++ .-++.+..+.+++....++|...+..+.|.+.++.++.....+
T Consensus 298 -----~~~~~~~~~~~~wg~a~~~~-~~~~~~~~a~-~~p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~~g~~~~~~~ 370 (394)
T COG2814 298 -----ASPALALALLFLWGFAFSPA-LQGLQTRLAR-LAPDAADLAGSLNVAAFNLGIALGAALGGLVLDALGYAATGWV 370 (394)
T ss_pred -----chHHHHHHHHHHHHHHhhhh-hhHHHHHhcc-cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHH
Confidence 12233333333322222211 1122222334 2357889999999999999999999999999999998888888
Q ss_pred HHHHHHHHHHHHhhccCC
Q 012002 408 SGWVLIMSCFVFFLLPET 425 (473)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~ 425 (473)
+++..+.+.++.+...+.
T Consensus 371 ~a~l~~~a~~~~~~~~~~ 388 (394)
T COG2814 371 GAALLLLALLLALLSARK 388 (394)
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 888777777766655443
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-44 Score=347.78 Aligned_cols=401 Identities=35% Similarity=0.662 Sum_probs=321.1
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhh---hHHHHHHHHHHHhhhhhhhhhhh
Q 012002 28 DNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVAAQ---NLAMLIVGRILLGCGVGFANQAV 104 (473)
Q Consensus 28 s~~~~~~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~l~~i~~~~~~~~~---~~~~l~~~r~l~G~~~~~~~~~~ 104 (473)
++.+.+++.+...+|..+|++++|+++||+|||+.++++.++..+++++.++++ +++.+.++|+++|++.|...+..
T Consensus 44 ~~~~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~ 123 (451)
T PF00083_consen 44 SSLLSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALLMIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVS 123 (451)
T ss_pred hHHHHHHHHHHHHhhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 445789999999999999999999999999999999999999999999999999 99999999999999999999999
Q ss_pred hHHHhhcCCCCCchhhHHHHHHHHHHHHHHHHHHhhhccccCCccchHHHHHhhhHHHHHHHHHhhcccCChhhHHhhCC
Q 012002 105 PLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVGSLLVTDTPNSLIERGR 184 (473)
Q Consensus 105 ~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~ 184 (473)
..++.|..|+++|++..++.+.++.+|.+++..++.......+..+||+.+.+..+++++..+..+++||||+|+..++|
T Consensus 124 ~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~l~~~~~~~~~pESP~wL~~~~~ 203 (451)
T PF00083_consen 124 PIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFGAIPSLLVLLLRFFLPESPRWLLSKGR 203 (451)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccceeccccc
Confidence 99999999999999999999999999999999886655444445679999999999998888778889999999999999
Q ss_pred hHHHHHHHHHHhCCCCchHHHHHHHHHHhhhhhcccchHHhhcccC-chhHHHHHHHHHHhhcchhHHHHHhHHHHHHHc
Q 012002 185 FEEGKAVLRKIRGTDKIEPEFLELVEASRIAKEVKHPFRNLLKRRN-RPQLVIAVALQIFQQCTGINAIMFYAPVLFKTL 263 (473)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (473)
.+|+++.+++.++.+..+.+..+..++.++.++.+.+++++++.+. +++....+.+..+....+......|.+.+.++.
T Consensus 204 ~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~~ 283 (451)
T PF00083_consen 204 DEEAEKVLRKLRGKEIEDEEIEEIKAEKKESQESKASWRDLFRNKKYRKRLLIALLLQFFQQFSGINFIFYYSPSIFENA 283 (451)
T ss_pred ccccccccccccccccccccccccccccccccccceeeeecccccccccccccccccccccccccccccccccccccccc
Confidence 9999999999776655555444444443333333366777887654 455555555666665666667777888888887
Q ss_pred CCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHhHHhHHHHHHHHHHHHHHhhhhccCCcccchhhHHHHHHHHH
Q 012002 264 GFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKDHSEDLHTGFAVLVVIMIC 343 (473)
Q Consensus 264 g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (473)
+.+.. -.......+..+++.+++.++.||+|||+.+..+...+.++...+....... ... +.......+....
T Consensus 284 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~~--~~~---~~~~~~~~i~~~~ 356 (451)
T PF00083_consen 284 GISNS--FLATLILGLVNFLGTLLAIFLIDRFGRRKLLIIGLLLMAICSLILGIIFFLG--VSS---SSWWSILSIVFLA 356 (451)
T ss_pred ccccc--cccccccccccccccccccccccccccccccccccccccccccccccccccc--ccc---ccccccccceeee
Confidence 77766 2344455667777888888999999999999988888777776665111000 000 0011233334444
Q ss_pred HHHHhhhccccccccccccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhh-hhHHHHHHHHHHHHHHHHHhhc
Q 012002 344 TFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHFK-FGIFLFFSGWVLIMSCFVFFLL 422 (473)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 422 (473)
.....+..++.+..+.+.+|.+|++.|+++.|+....+++++.+.+.+...+.+..+ ...+.++.+++.+..++.++++
T Consensus 357 l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~i~~i~~~~~l 436 (451)
T PF00083_consen 357 LFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNNLGGWGVFLIFAGVCLIAIIFVYFFL 436 (451)
T ss_pred eccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhHHHHHHHHhheeEEE
Confidence 455566667778888999999999999999999999999999999999988888776 6677777888888888889999
Q ss_pred cCCCCCChHHHHHH
Q 012002 423 PETKNVPIEEMTER 436 (473)
Q Consensus 423 ~~~~~~~~~~~~~~ 436 (473)
||||+++++|+ ++
T Consensus 437 pET~g~~l~ei-~~ 449 (451)
T PF00083_consen 437 PETKGKTLEEI-QE 449 (451)
T ss_pred eeCCCCCHHHH-Hh
Confidence 99999999998 44
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-37 Score=291.40 Aligned_cols=379 Identities=14% Similarity=0.122 Sum_probs=263.7
Q ss_pred hHhHhhhhccccCCCCCcccCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 012002 7 KFFPVVYRRTQQGDDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVAAQNLAML 86 (473)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~l~~i~~~~~~~~~~~~~l 86 (473)
+|++....+...|.+++|+|++..+.|++.+++.+++.+++++.|+++||+|||+++..+.++++++++++++++|++.+
T Consensus 20 ~~~d~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~l 99 (412)
T TIGR02332 20 SFLDRINIGFAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLWGIASTATMFATGPESL 99 (412)
T ss_pred HHhhhhhHHHHHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence 34445555666788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhhhhhhhhhHHHhhcCCCCCchhhHHHHHHHHHHHHHHHHHHhhhccc---cCCccchHHHHHhhhHHHH
Q 012002 87 IVGRILLGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTSH---IKSQWGWRISLGLAGIPAA 163 (473)
Q Consensus 87 ~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~---~~~~~~wr~~f~~~~~~~~ 163 (473)
++.|+++|++.+...+....++.|++|+++|++++++++.+.++|.+++++++..... +.+..|||+.|++.+++++
T Consensus 100 ~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~l 179 (412)
T TIGR02332 100 YLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDGLMALKGWQWLFLLEGFPSV 179 (412)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccchhHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999654432 1245799999999888887
Q ss_pred HHHHH-hhcccCChhhHHhhCChHHHHHHHHHHhCCCCchHHHHHHHHHHhhhhhcccchHHhhcccCchhHHHHHHHHH
Q 012002 164 LLTVG-SLLVTDTPNSLIERGRFEEGKAVLRKIRGTDKIEPEFLELVEASRIAKEVKHPFRNLLKRRNRPQLVIAVALQI 242 (473)
Q Consensus 164 ~~~~~-~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (473)
+..++ ++++||+|+.... -..++.+...+.........++..+ ...+.....+..+++++ . +.++...+.+
T Consensus 180 ~~~~~~~~~~~~~p~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~ 251 (412)
T TIGR02332 180 ILGVMTWFWLDDSPDKAKW-LDEEDKKALKEMIDNDQLTLEQPEG--AFAHAAMPQRSMLREIF----T-PAIMLYTLAY 251 (412)
T ss_pred HHHHHHhhccCCCcccCCC-CCHHHHHHHHHHHHhcccccccccc--ccccccccHHHHHHHhc----C-hHHHHHHHHH
Confidence 66554 5668888843100 0011111111111100000000000 00000000011222222 1 2256666667
Q ss_pred HhhcchhHHHHHhHHHHHHHc--CCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHh-HHhHHHHHHHHHHHHHH
Q 012002 243 FQQCTGINAIMFYAPVLFKTL--GFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLL-EAGIQMFLSQTVIAIIL 319 (473)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~-~~~~~~~~~~~~~~~~~ 319 (473)
++....++.+..|.|.++++. |++..+++.......++.+++.++.|+++||+++|+... .......++. ++....
T Consensus 252 ~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~~~~~~~~~~~~~~~-~~~~~~ 330 (412)
T TIGR02332 252 FCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKERKHHTALPYLFAAAGW-LLASAT 330 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcccCccHHHHHHHHHHHHHHH-HHHHhc
Confidence 777777888899999999874 677788888899999999999999999999999777533 2222222221 111110
Q ss_pred hhhhccCCcccchhhHHHHHHHHHHHHHhhhccccccccccccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 012002 320 GIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHF 399 (473)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (473)
.. ........+....+. ....+..+....|.+|++.|+++.|+.+...++|++++|.+.|.+.+..
T Consensus 331 -----------~~--~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~a~g~~~~~~~~g~~~~p~~~g~i~~~~ 396 (412)
T TIGR02332 331 -----------DH--NLIQLLGIIMASMGS-FSAMAIFWTTPDQSISLQARAIAIAVINATGNIGSALSPFLIGILKDAT 396 (412)
T ss_pred -----------CC--HHHHHHHHHHHHHHh-hhhhhHHHhhcccccchHHHHHHHHHHHHhhhhhhhhhhhhcccccccC
Confidence 11 111111111111111 1112333455567889999999999999999999999999999999987
Q ss_pred h-hhHHHHHH
Q 012002 400 K-FGIFLFFS 408 (473)
Q Consensus 400 ~-~~~~~~~~ 408 (473)
+ +...+.++
T Consensus 397 g~~~~~~~~~ 406 (412)
T TIGR02332 397 GSFNSGLWFV 406 (412)
T ss_pred CCCchhHHHH
Confidence 5 55544443
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-36 Score=284.59 Aligned_cols=351 Identities=11% Similarity=0.058 Sum_probs=255.7
Q ss_pred hccccCCCCCcccCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 012002 14 RRTQQGDDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVAAQNLAMLIVGRILL 93 (473)
Q Consensus 14 ~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~l~~i~~~~~~~~~~~~~l~~~r~l~ 93 (473)
.....|.+.+++|+|+++.|++.+.+.+++.++++++|+++||+|||+++..+.++.+++++++++++|++.++++|+++
T Consensus 28 ~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~ 107 (390)
T PRK03545 28 PVGLLSDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIASHVLSALAWNFTVLLISRIGI 107 (390)
T ss_pred HHcchHHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 34456889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhhhhHHHhhcCCCCCchhhHHHHHHHHHHHHHHHHHHhhhccccCCccchHHHHHhhhHHHHHHHHH-hhcc
Q 012002 94 GCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVG-SLLV 172 (473)
Q Consensus 94 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~-~~~~ 172 (473)
|++.+...+...+++.|++|+++|++++++...+.++|.+++|+++. .+.++.|||+.|++.+++.++..+. ..++
T Consensus 108 G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~---~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~ 184 (390)
T PRK03545 108 AFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGR---VIGQYLGWRTTFLAIGGGALITLLLLIKLL 184 (390)
T ss_pred HHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHH---HHHHHhcHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999944 3445679999999999887766555 3345
Q ss_pred cCChhhHHhhCChHHHHHHHHHHhCCCCchHHHHHHHHHHhhhhhcccchHHhhcccCchhHHHHHHHHHHhhcchhHHH
Q 012002 173 TDTPNSLIERGRFEEGKAVLRKIRGTDKIEPEFLELVEASRIAKEVKHPFRNLLKRRNRPQLVIAVALQIFQQCTGINAI 252 (473)
Q Consensus 173 ~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (473)
||+|+. +.+ ..++.++.+|++..+ ......++........
T Consensus 185 ~~~~~~-----~~~-------------------------------~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 224 (390)
T PRK03545 185 PLLPSE-----HSG-------------------------------SLKSLPLLFRRPALV----SLYLLTVVVVTAHFTA 224 (390)
T ss_pred CCCCCC-----Ccc-------------------------------hHHHHHHHHhCcHHH----HHHHHHHHHHHHHHHH
Confidence 654310 000 001123455555422 2222222222233333
Q ss_pred HHhHHHHHHH-cCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHhHHhHHHHHHHHHHHHHHhhhhccCCcccc
Q 012002 253 MFYAPVLFKT-LGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKDHSEDLH 331 (473)
Q Consensus 253 ~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (473)
..+.+.++++ .|++..+++......+++.++++++.+++.||++||+.. .+.....+....+... .
T Consensus 225 ~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~-~~~~~~~~~~~~l~~~------------~ 291 (390)
T PRK03545 225 YSYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGFLL-IAIALLLVCLLLLLPA------------A 291 (390)
T ss_pred HHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHH-HHHHHHHHHHHHHHHH------------h
Confidence 4455555544 799999999999999999999999999999999987643 3333333333222211 1
Q ss_pred hhhHHHHHHHHHHHHHhhhccccccccccccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHH
Q 012002 332 TGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHFKFGIFLFFSGWV 411 (473)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (473)
. ..+.......+.+.. .....+.......+..| +.+++++|+.+...++|..+++.+.|.+.++.++...+...+.+
T Consensus 292 ~-~~~~~~~~~~l~g~~-~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~g~~~~~~~~~~~ 368 (390)
T PRK03545 292 N-SEWHLSVLSIFWGIA-IMCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVSLHLGLSSIGYVGAAL 368 (390)
T ss_pred c-hHHHHHHHHHHHHHH-HhcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHH
Confidence 1 112222222222222 22222333445567766 57899999999999999999999999999999887777766666
Q ss_pred HHHHHHHHhhcc
Q 012002 412 LIMSCFVFFLLP 423 (473)
Q Consensus 412 ~~~~~~~~~~~~ 423 (473)
.+.+++......
T Consensus 369 ~~~~~~~~~~~~ 380 (390)
T PRK03545 369 ALAALVWSILIF 380 (390)
T ss_pred HHHHHHHHHHHc
Confidence 666555554433
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-36 Score=289.67 Aligned_cols=351 Identities=14% Similarity=0.112 Sum_probs=254.4
Q ss_pred ccccCCCCCcccCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHh
Q 012002 15 RTQQGDDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVAAQNLAMLIVGRILLG 94 (473)
Q Consensus 15 ~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~l~~i~~~~~~~~~~~~~l~~~r~l~G 94 (473)
....|.+.+++|+|+.+.+++.+.+.+++.+++++.|+++||+|||+++.++.++.++++++++++++++.++++|+++|
T Consensus 38 ~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G 117 (426)
T PRK12307 38 FYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGTGLSGLASGVIMLTLSRFIVG 117 (426)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 44556788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhhhHHHhhcCCCCCchhhHHHHHHHHHHHHHHHHHHhhhccccCCccchHHHHHhhhHHHHHHHHHhhcccC
Q 012002 95 CGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVGSLLVTD 174 (473)
Q Consensus 95 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e 174 (473)
++.+..++....++.|++|+++|++++++...+.++|.++++.+ ...+.+..+||+.|++..+..++...+....||
T Consensus 118 ~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l---~~~l~~~~~w~~~f~i~~~~~~~~~~~~~~~p~ 194 (426)
T PRK12307 118 MGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYF---MPSFAEAYGWRAAFFVGLLPVLLVIYIRARAPE 194 (426)
T ss_pred HHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHH---HHHHcccCCHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 99999999999999999999999999999999999999999988 455556689999998865544433332333455
Q ss_pred ChhhHHhhCChHHHHHHHHHHhCCCCchHHHHHHHHHHhhhhhcccchHHhhcccCchhHHHHHHHHHHhhcchhHHHHH
Q 012002 175 TPNSLIERGRFEEGKAVLRKIRGTDKIEPEFLELVEASRIAKEVKHPFRNLLKRRNRPQLVIAVALQIFQQCTGINAIMF 254 (473)
Q Consensus 175 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (473)
++++..++.+. .++.+. ...+..+.+++++++++..+..... ....+......+.+..
T Consensus 195 ~~~~~~~~~~~------------~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 252 (426)
T PRK12307 195 SKEWEEAKLSG------------KGKHSQ---------SAWSVFSLSMKGLFNRAQFPLTLCV-FIVLFSIFGANWPIFG 252 (426)
T ss_pred ChHHHHhhhhc------------cccccc---------cchhhhhHHHHHHHhhchHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 54332111000 000000 0000111245566666554332222 2222223333344566
Q ss_pred hHHHHHHHcCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHhHHhHHHHHHHHHHHHHHhhhhccCCcccchhh
Q 012002 255 YAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKDHSEDLHTGF 334 (473)
Q Consensus 255 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (473)
+.|.++++.|+++...+...+...++.+++.++.+++.||++||+.+..+.+...+....+... ....
T Consensus 253 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~ 320 (426)
T PRK12307 253 LLPTYLAGEGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFRI------------PQDN 320 (426)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHH------------cccc
Confidence 7888888889998888888888999999999999999999999998887766655444333221 1111
Q ss_pred HHHHHHHHHHHHHhhhccccccccccccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhH
Q 012002 335 AVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHFKFGI 403 (473)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (473)
.. ......+.......+..+....++.|.+|++.|+++.|+.+....+++.++|.+.|.+.+..++..
T Consensus 321 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~~~~g~~~ 388 (426)
T PRK12307 321 YL-LLGACLFGLMATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLGITMGLGA 388 (426)
T ss_pred HH-HHHHHHHHHHHhcccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHcccHHH
Confidence 11 111111111111122223444566899999999999999999999999999999999998887554
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-36 Score=281.37 Aligned_cols=326 Identities=12% Similarity=0.041 Sum_probs=231.3
Q ss_pred ccccCCCCCcccCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHh
Q 012002 15 RTQQGDDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVAAQNLAMLIVGRILLG 94 (473)
Q Consensus 15 ~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~l~~i~~~~~~~~~~~~~l~~~r~l~G 94 (473)
.+..|.+++|+|+|+.+.|++.+.+.+++.+++++.|+++||+|||+++..+......+.+....+++++.++++|+++|
T Consensus 11 ~~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G 90 (368)
T TIGR00903 11 SPVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDPFNYEWLLACQLLAA 90 (368)
T ss_pred HhhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 34567788899999999999999999999999999999999999999877665555454433333479999999999999
Q ss_pred hhhhhhhhhhhHHHhhcCCCCCchhhHHHHHHHHHHHHHHHHHHhhhccccCCccchHHHHHhhhHHHHHHHHH-hhccc
Q 012002 95 CGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVG-SLLVT 173 (473)
Q Consensus 95 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~-~~~~~ 173 (473)
++.+. .+.....++|++|+++|++++++.+.+.++|.+++++++. .+.+++|||+.|++.++++++..++ ++++|
T Consensus 91 ~g~~~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~---~l~~~~gWr~~f~~~~~l~~~~~~~~~~~lp 166 (368)
T TIGR00903 91 LGQPF-LLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGL---KIYTAGGLQLLIIPIAAVAAAGIILVLAALP 166 (368)
T ss_pred hHhHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHccchHHHHHHHHHHHHHHHHHHHHHcC
Confidence 99996 5666667799999999999999999999999999999944 4455689999999988887776655 55689
Q ss_pred CChhhHHhhCChHHHHHHHHHHhCCCCchHHHHHHHHHHhhhhhcccchHHhhcccCchhHHHHHHHHHHhhcchhHHHH
Q 012002 174 DTPNSLIERGRFEEGKAVLRKIRGTDKIEPEFLELVEASRIAKEVKHPFRNLLKRRNRPQLVIAVALQIFQQCTGINAIM 253 (473)
Q Consensus 174 e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (473)
|+|++.. +.. +. .+ ..++++++++++. ++...+..++....++.+.
T Consensus 167 ~~p~~~~---~~~---------------~~--~~----------~~~~~~~ll~~~~----~~~~~~~~~~~~~~~~~~~ 212 (368)
T TIGR00903 167 ALPFQAA---EGF---------------GF--KD----------AVKEFGALAGRKD----LWIIGAILGFGVALFDNLA 212 (368)
T ss_pred CCCCCCC---CCc---------------ch--HH----------HHHHHHHHHcChh----HHHHHHHHHHHHHHHHHHH
Confidence 9875421 000 00 00 0013556777665 6777777777788888999
Q ss_pred HhHHHHHHHcCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCcc---hhHhH-HhHHHHHHHHHHHHHHhhhhccCCcc
Q 012002 254 FYAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRR---MLLLE-AGIQMFLSQTVIAIILGIKVKDHSED 329 (473)
Q Consensus 254 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (473)
.|.|.++++.|++.. .+.......+.+.++ .++++||..|| +.... .....++....+..
T Consensus 213 ~wlp~~L~~~g~s~~-~~~~~~l~~~~g~~g---~~~~~d~~~r~~~r~~~~~~~~~~~a~~~~~~~~------------ 276 (368)
T TIGR00903 213 IWLEAALRPAGLEDI-AGDAVALAILAGLIG---VAVIPDRVARAGLRSIYIRAAALLIAAFFLALAF------------ 276 (368)
T ss_pred HHHHHHHHHCCCChH-HHHHHHHHHHHHHHH---HHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHH------------
Confidence 999999988888754 555555555555444 57788887543 32222 22222222211111
Q ss_pred cchhhHHHHHHHHHHHHHhhhccccccccccccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 012002 330 LHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLC 397 (473)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (473)
... ....+... ...+.+.....+..+.+.+|.+|++.|+++.|+.+..+++++..+|.+.+.+..
T Consensus 277 -~~~-~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~~ 341 (368)
T TIGR00903 277 -ELN-RLALFAFI-GIAGLLMLPAYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAMLFIS 341 (368)
T ss_pred -ccc-cHHHHHHH-HHHHHhhhhhHHHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHHhc
Confidence 111 11222222 222222333334456788999999999999999999999999999999988774
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-36 Score=286.73 Aligned_cols=366 Identities=17% Similarity=0.175 Sum_probs=242.6
Q ss_pred hHhhhhccccCCCCCccc---CCCchhHHHHHHH---HHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhh
Q 012002 9 FPVVYRRTQQGDDSNYCK---YDNQGLQLFTSSL---YLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVAAQN 82 (473)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~---~s~~~~~~~~s~~---~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~l~~i~~~~~~~~~~ 82 (473)
++....+...|.+.++++ .+..+.+...+.+ +++..++++++|+++||+|||+++..+.+++++++++++++++
T Consensus 36 ~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~ 115 (432)
T PRK10406 36 FDFYVYSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKSMLISVCMMCFGSLVIACLPG 115 (432)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhhcCC
Confidence 343344455566677763 4555544444444 4555599999999999999999999999999999999999988
Q ss_pred HH--------HHHHHHHHHhhhhhhhhhhhhHHHhhcCCCCCchhhHHHHHHHHHHHHHHHHHHhhhccccC-----Ccc
Q 012002 83 LA--------MLIVGRILLGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTSHIK-----SQW 149 (473)
Q Consensus 83 ~~--------~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~-----~~~ 149 (473)
+. .++++|+++|++.|+.++...++++|++|+++|+++.++.+.+...|.++++.+........ ..+
T Consensus 116 ~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~ 195 (432)
T PRK10406 116 YETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALLVVVVLQQTLEDAELREW 195 (432)
T ss_pred chhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhcc
Confidence 74 58899999999999999999999999999999999999999888888888887644333221 257
Q ss_pred chHHHHHhhhHHHHHHHHHhhcccCChhhHHhhCChHHHHHHHHHHhCCCCchHHHHHHHHHHhhhhhcccchHHhhccc
Q 012002 150 GWRISLGLAGIPAALLTVGSLLVTDTPNSLIERGRFEEGKAVLRKIRGTDKIEPEFLELVEASRIAKEVKHPFRNLLKRR 229 (473)
Q Consensus 150 ~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (473)
|||++|++.++++++...+...+||+|++.. + ++++..++++++|++
T Consensus 196 gWr~~F~i~~~~~ll~~~~~~~~~e~~~~~~------~---------------------------~~~~~~~~~~l~~~~ 242 (432)
T PRK10406 196 GWRIPFALGAVLAVVALWLRRQLDETSQQET------R---------------------------ALKEAGSLKGLWRNR 242 (432)
T ss_pred chHHHHHHHHHHHHHHHHHHhcCCCCchHHH------h---------------------------hhcccccHHHHHhhH
Confidence 9999999988888776655556777763210 0 000122456666543
Q ss_pred CchhHHHHHHHHHHhhcchhHHHHHhHHHHHHH-cCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHhHHhHHH
Q 012002 230 NRPQLVIAVALQIFQQCTGINAIMFYAPVLFKT-LGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQM 308 (473)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~ 308 (473)
+ .+.......+.....++.+..|.|.++++ +|++..+.+.......+...++..+.|+++||++||+.+.....+.
T Consensus 243 ~---~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~ 319 (432)
T PRK10406 243 R---AFIMVLGFTAAGSLCFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLA 319 (432)
T ss_pred H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHH
Confidence 3 12222222223344566777888888754 7999888888888888888888999999999999998876655543
Q ss_pred HHHHHHHHHHHhhhhccCCcccchhhHHHHHHHHHHHHHhhhccccccccccccccccccchhhhHHHHHHHHHH-HHHH
Q 012002 309 FLSQTVIAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLL-FTFV 387 (473)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~-~~~~ 387 (473)
.+....+..... ........+........... ...+..+.+.+|.+|++.|+++.|+.+..++. .+..
T Consensus 320 ~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~ 388 (432)
T PRK10406 320 ALFTVPILSALQ----------NVSSPYAAFGLVMCALLIVS-FYTSISGILKAEMFPAQVRALGVGLSYAVANALFGGS 388 (432)
T ss_pred HHHHHHHHHHHH----------cCCcHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhH
Confidence 333222211110 00111111111111111111 11123456678999999999999999988765 3445
Q ss_pred HHHHHHHHhhhhh-hhHHHHHHHHHHHHHHHHHhhc
Q 012002 388 IAQAFLSMLCHFK-FGIFLFFSGWVLIMSCFVFFLL 422 (473)
Q Consensus 388 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 422 (473)
.|.+.+.+ +..+ +...+.+.++..+++.+..+++
T Consensus 389 ~p~~~~~l-~~~g~~~~~~~~~~~~~~i~~~~~~~l 423 (432)
T PRK10406 389 AEYVALSL-KSIGMETAFFWYVTLMAVVAFLVSLML 423 (432)
T ss_pred HHHHHHHH-HHhCCCcHHHHHHHHHHHHHHHHHHHh
Confidence 66666644 4444 4444444445555554444443
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-37 Score=295.20 Aligned_cols=380 Identities=12% Similarity=0.010 Sum_probs=262.3
Q ss_pred HhhhhccccCCCCCcccCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHH-----hhhHH
Q 012002 10 PVVYRRTQQGDDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVA-----AQNLA 84 (473)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~l~~i~~~~~~~-----~~~~~ 84 (473)
.....+...|.+.+|+|++..+.|++.+.+.+++.+++++.|+++||+|||+++..+.++++++.++.++ +++++
T Consensus 44 ~r~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (467)
T PRK09556 44 IRKNFKAAQNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGKNTKQFLPFLLILSAICMLGFGASLGSGSVSLG 123 (467)
T ss_pred HhcChhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhccCccchHHHHHHHHHHHHHHHHHHHhcccchHH
Confidence 3444455678899999999999999999999999999999999999999999999988888887777665 58999
Q ss_pred HHHHHHHHHhhhhhhhhhhhhHHHhhcCCCCCchhhHHHHHHHHHHHHHHHHHHhhhccccCCccchHHHHHhhhHHHHH
Q 012002 85 MLIVGRILLGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAAL 164 (473)
Q Consensus 85 ~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~ 164 (473)
.+++.|+++|++.+...+...++++||+|+++|+++++++..+.++|.+++++++..........+||..|.+.+++.++
T Consensus 124 ~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~~~~~~~~f~~~g~~~~~ 203 (467)
T PRK09556 124 LMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWGANYFFDGHVIGMFIFPSIIALI 203 (467)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHHHHhhccCcchhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999998853322111112699999888888777
Q ss_pred HHHHh-hcccCChhhHHhhCChHHHHHHHHHHhCCCCchHHHHHHHHHHhhhhhcccchH-----HhhcccCchhHHHHH
Q 012002 165 LTVGS-LLVTDTPNSLIERGRFEEGKAVLRKIRGTDKIEPEFLELVEASRIAKEVKHPFR-----NLLKRRNRPQLVIAV 238 (473)
Q Consensus 165 ~~~~~-~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~ 238 (473)
..++. ++.+++|+..... +.++ .. .+. ...+ +... ++.+.+.. ..++++. ++..
T Consensus 204 ~~i~~~~~~~~~p~~~~~~-~~~~---~~----~~~-~~~~------~~~~-~~~~~~~~~~~~~~~l~~~~----~~~~ 263 (467)
T PRK09556 204 IGFIGLRYGSDSPEELGWG-KAEE---IF----GEP-ISEE------DKET-ESTDMTKWQIFVEYVLKNPV----IWLL 263 (467)
T ss_pred HHHHHHHhCCCChhhcCCC-Chhh---cc----cCc-cchh------hhcc-ccccCcHHHHHHHHHHcChH----HHHH
Confidence 66554 4456666421111 0010 00 000 0000 0000 00011111 1344433 6666
Q ss_pred HHHHHhhcchhHHHHHhHHHHHHH-cCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHhHHhHHHHHHHHHHHH
Q 012002 239 ALQIFQQCTGINAIMFYAPVLFKT-LGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAI 317 (473)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~ 317 (473)
.+..++....+.....|.|.++++ +|++..+++.......++.+++.++.|+++||++||+.+........++...+..
T Consensus 264 ~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~~~ 343 (467)
T PRK09556 264 CFANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALIIFTLGVY 343 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHH
Confidence 666666666667788899988755 8999999999988899999999999999999999998766544333322221111
Q ss_pred HHhhhhccCCcccchhhHHHHHHHHHHHHHhhhccccccccccccccccccchhhhHHHHHHHHHH-HHHHHHHHHHHHh
Q 012002 318 ILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLL-FTFVIAQAFLSML 396 (473)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 396 (473)
. .....+......+..+. ...+..........|.+|++.+|++.|+.+..+++ ++.++|.+.|.+.
T Consensus 344 ~------------~~~~~~~~~~~~~~~G~-~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~ 410 (467)
T PRK09556 344 Q------------HATSEYMYLASLFALGF-LVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIA 410 (467)
T ss_pred H------------hcCcHHHHHHHHHHHHH-HHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHh
Confidence 1 11111122122222221 11111112224456999999999999999999997 7799999999999
Q ss_pred h------------hhhhhHHHHHHHHHHHHHHHHHhhc
Q 012002 397 C------------HFKFGIFLFFSGWVLIMSCFVFFLL 422 (473)
Q Consensus 397 ~------------~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (473)
| ..+|...+.+..++.+++.+..+++
T Consensus 411 ~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 448 (467)
T PRK09556 411 DPTKNGTPIFGYTLTGWAGTFAALDIAAIGCICLMAIV 448 (467)
T ss_pred cccccccccccccccChHHHHHHHHHHHHHHHHHHHHH
Confidence 9 4556666655555555555555444
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-36 Score=284.75 Aligned_cols=362 Identities=16% Similarity=0.137 Sum_probs=265.3
Q ss_pred hhhccccCCCCCcccCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 012002 12 VYRRTQQGDDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVAAQNLAMLIVGRI 91 (473)
Q Consensus 12 ~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~l~~i~~~~~~~~~~~~~l~~~r~ 91 (473)
...+...|.+.+++|+++.+.+++.+.+.++..+++++.|+++||+|||+++..+.++.+++.++++++++++.+++.|+
T Consensus 32 ~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (406)
T PRK11551 32 QSAGVAAPRMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVALFGLFSLATAQAWDFPSLLVARL 111 (406)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 33455667888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhhhhhhhhHHHhhcCCCCCchhhHHHHHHHHHHHHHHHHHHhhhccccCCccchHHHHHhhhHHHHHHHHH-hh
Q 012002 92 LLGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVG-SL 170 (473)
Q Consensus 92 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~-~~ 170 (473)
++|++.+...+...+++.|++|+++|++++++.+.+..+|..+++.++ ..+.+..+||+.|++.+++.++..++ ..
T Consensus 112 l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (406)
T PRK11551 112 LTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIG---VLAAGDAAWRHIFYVGGVGPLLLVPLLMR 188 (406)
T ss_pred HHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHccccCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999984 34445678999999988766655544 45
Q ss_pred cccCChhhHHhhCChHHHHHHHHHHhCCCCchHHHHHHHHHHhhhhhcccchHHhhcccCchhHHHHHHHHHHhhcchhH
Q 012002 171 LVTDTPNSLIERGRFEEGKAVLRKIRGTDKIEPEFLELVEASRIAKEVKHPFRNLLKRRNRPQLVIAVALQIFQQCTGIN 250 (473)
Q Consensus 171 ~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (473)
++||+|++..++++.++ .+...+..++.+..++ .+......+......+
T Consensus 189 ~l~~~~~~~~~~~~~~~------------------------------~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 237 (406)
T PRK11551 189 WLPESRAFAQAAGAGKQ------------------------------RAPVLRALFGEGRATA-TLLLWISYFFTLIVLY 237 (406)
T ss_pred hCCCChhHHhccCcchh------------------------------hhhhHHHHhhhhhhhH-HHHHHHHHHHHHHHHH
Confidence 57887754322111000 0000111122111111 2222223333334455
Q ss_pred HHHHhHHHHHHHcCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHhHHhHHHHHHHHHHHHHHhhhhccCCccc
Q 012002 251 AIMFYAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKDHSEDL 330 (473)
Q Consensus 251 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (473)
....|.|.++++.|+++.+.+.......++.+++.++.|++.||++||+.+........++...+...
T Consensus 238 ~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~------------ 305 (406)
T PRK11551 238 FLLNWLPSLLVGQGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAA------------ 305 (406)
T ss_pred HHHHHHHHHHHhCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhc------------
Confidence 66778899988899999999999999999999999999999999999998877555544443333221
Q ss_pred chhhHHHHHHHHHHHHHhhhccccccccccccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhh-hhHHHHHHH
Q 012002 331 HTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHFK-FGIFLFFSG 409 (473)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 409 (473)
+ ..+.... ..+..+....+..+....+..|.+|++.|+++.|+.+....++..++|.+.|.+.++.+ +...+....
T Consensus 306 ~--~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~ 382 (406)
T PRK11551 306 P--SFAGMLL-AGFAAGLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALGRSTVGVIGASI 382 (406)
T ss_pred C--cHHHHHH-HHHHHHHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccCCchHHHHHHHH
Confidence 1 1111111 22222222223334556777899999999999999999999999999999999988754 334444444
Q ss_pred HHHHHHHHHHhhc
Q 012002 410 WVLIMSCFVFFLL 422 (473)
Q Consensus 410 ~~~~~~~~~~~~~ 422 (473)
.+.+.+.++.+.+
T Consensus 383 ~~~~~~~~~~~~~ 395 (406)
T PRK11551 383 PVILVAALAALLL 395 (406)
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444433
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-36 Score=286.18 Aligned_cols=372 Identities=15% Similarity=0.102 Sum_probs=258.4
Q ss_pred ccccCCCCCcccCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHh
Q 012002 15 RTQQGDDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVAAQNLAMLIVGRILLG 94 (473)
Q Consensus 15 ~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~l~~i~~~~~~~~~~~~~l~~~r~l~G 94 (473)
+...|++.+++|+|..+.|++.+.+.+++.+++++.|+++||+|||+++.++.++.+++.++++++++++.+++.|++.|
T Consensus 43 ~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g 122 (434)
T PRK11663 43 NAAMPEMLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGIINILFGFSSSLWAFALLWVLNA 122 (434)
T ss_pred HHhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 45567888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhhhHHHhhcCCCCCchhhHHHHHHHHHHHHHHHHHHhhhccccCCccchHHHHHhhhHHHHHHHHH-hhccc
Q 012002 95 CGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVG-SLLVT 173 (473)
Q Consensus 95 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~-~~~~~ 173 (473)
++.|...+...+++.|++|+++|++++++.+.+.++|.++++.+ .+.+.+.+|||+.|++.+++.++..+. .++++
T Consensus 123 ~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~---~~~l~~~~gw~~~f~~~~i~~~~~~~~~~~~~~ 199 (434)
T PRK11663 123 FFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLV---VGAIALHYGWRYGMMIAGIIAIVVGLFLCWRLR 199 (434)
T ss_pred HHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999998 444555689999999988877655444 45678
Q ss_pred CChhhHHhhCChHHHHHHHHHHhCCCCchHHHHHHHHHHhhhhhcccchHHhhcc-cCchhHHHHHHHHHHhhcchhHHH
Q 012002 174 DTPNSLIERGRFEEGKAVLRKIRGTDKIEPEFLELVEASRIAKEVKHPFRNLLKR-RNRPQLVIAVALQIFQQCTGINAI 252 (473)
Q Consensus 174 e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 252 (473)
|+|++.......++.. +.+ + ..++.++.+.+.++.++. ..+.+.++...+..+.....+..+
T Consensus 200 ~~p~~~~~~~~~~~~~----------~~~----~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (434)
T PRK11663 200 DKPQAMGLPSVGEWRH----------DAL----E---LAQQQEGAGLSRKEILTKYVLLNPYIWLLSFSYVLVYVVRAAI 262 (434)
T ss_pred CCHhhcCCCCcccccc----------ccc----c---cchhccccCCChhhhHHHHHhcChHHHHHHHHHHHHHHHHHHH
Confidence 8774321110000000 000 0 000000011122222221 111122455555455555556667
Q ss_pred HHhHHHHHH-HcCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhc--CcchhHh-HHhHHHHHHHHHHHHHHhhhhccCCc
Q 012002 253 MFYAPVLFK-TLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKV--GRRMLLL-EAGIQMFLSQTVIAIILGIKVKDHSE 328 (473)
Q Consensus 253 ~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (473)
..|.|.+++ ++|++..+++...+...+++++++++.|+++||+ ++|+... .......+....+...
T Consensus 263 ~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~~~~~~~~~~---------- 332 (434)
T PRK11663 263 NDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILLSVGSLWLM---------- 332 (434)
T ss_pred HHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHHHHHHHHHHc----------
Confidence 778888885 5899999999999999999999999999999998 3333332 2111111111111111
Q ss_pred ccchhhHHHHHHHHHHHHHhhhccccccccccccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHH
Q 012002 329 DLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHFKFGIFLFFS 408 (473)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (473)
.......... .++..+.+..+..........|.+|++.|+++.|+.+...++|..++|.+.|.+.+..++...+...
T Consensus 333 --~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~~g~~~~f~~~ 409 (434)
T PRK11663 333 --PFASYVMQAA-CFFTIGFFVFGPQMLIGMAAAECSHKEAAGAATGFVGLFAYLGAALSGYPLAKVLEIWHWTGFFVVI 409 (434)
T ss_pred --ccccHHHHHH-HHHHHHHHHhhHHHHHHHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccHHHHHHhcccHHHHHHH
Confidence 0001111111 1111111111111122345579999999999999999999999999999999999988877666665
Q ss_pred HHHHHHHHHHH
Q 012002 409 GWVLIMSCFVF 419 (473)
Q Consensus 409 ~~~~~~~~~~~ 419 (473)
+++.+++.+..
T Consensus 410 ~~~~~~~~~~~ 420 (434)
T PRK11663 410 SIAAGISALLL 420 (434)
T ss_pred HHHHHHHHHHH
Confidence 55554444433
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-35 Score=279.00 Aligned_cols=357 Identities=15% Similarity=0.127 Sum_probs=240.9
Q ss_pred cCCCchhHHHH-----HHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHH--------HHHHHHHH
Q 012002 26 KYDNQGLQLFT-----SSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVAAQNLA--------MLIVGRIL 92 (473)
Q Consensus 26 ~~s~~~~~~~~-----s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~l~~i~~~~~~~~~~~~--------~l~~~r~l 92 (473)
+.++. .+++. ++.+++..+++++.|+++||+|||++++.+.+++++++++++++++++ .++++|++
T Consensus 56 ~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l 134 (438)
T PRK09952 56 QVSPA-MGTLAAFATFGVGFLFRPLGGVVFGHFGDRLGRKRMLMLTVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAI 134 (438)
T ss_pred CCCcH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHH
Confidence 45555 45554 355677889999999999999999999999999999999999999987 58889999
Q ss_pred HhhhhhhhhhhhhHHHhhcCCCCCchhhHHHHHHHHHHHHHHHHHHhhhcccc-----CCccchHHHHHhhhHHHHHHHH
Q 012002 93 LGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTSHI-----KSQWGWRISLGLAGIPAALLTV 167 (473)
Q Consensus 93 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~-----~~~~~wr~~f~~~~~~~~~~~~ 167 (473)
+|++.|+.++....++.|++|+++|++..+..+.+..+|.+++..+....... ..++|||++|++.+++.++...
T Consensus 135 ~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~~~~ 214 (438)
T PRK09952 135 QGFAVGGEWGGAALLAVESAPKNKKAFYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLIALW 214 (438)
T ss_pred HHhhhcccHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999987764333221 1357999999998887666554
Q ss_pred HhhcccCChhhHHhhCChHHHHHHHHHHhCCCCchHHHHHHHHHHhhhhhcccchH-HhhcccCchhHHHHHHHHHHhhc
Q 012002 168 GSLLVTDTPNSLIERGRFEEGKAVLRKIRGTDKIEPEFLELVEASRIAKEVKHPFR-NLLKRRNRPQLVIAVALQIFQQC 246 (473)
Q Consensus 168 ~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 246 (473)
+....||+|++...+++.++ .+.+.+.. .++++++ .+.......++..
T Consensus 215 l~~~~~es~~~~~~~~~~~~----------------------------~~~~~~~~~~l~~~~~---~~~~~~~~~~~~~ 263 (438)
T PRK09952 215 VRNGMEESAEFEQQQHEQAA----------------------------AKKRIPVIEALLRHPG---AFLKIIALRLCEL 263 (438)
T ss_pred HHHhCCCChhHHHHHhhccc----------------------------ccccCCHHHHHHHchH---HHHHHHHHHHHHH
Confidence 45567888765322211000 00011112 2333322 1222222333444
Q ss_pred chhHHHHHhHHHHHH-HcCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHhHHhHHHHHHHHHHHHHHhhhhcc
Q 012002 247 TGINAIMFYAPVLFK-TLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKD 325 (473)
Q Consensus 247 ~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (473)
...+....|.|.+.+ .+|++...........++..+++.++.|+++||++||+.+..+.+...++...+.....
T Consensus 264 ~~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~----- 338 (438)
T PRK09952 264 LTMYIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALE----- 338 (438)
T ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHH-----
Confidence 455666778887775 47888765555555667778888899999999999999887765554443322222110
Q ss_pred CCcccchhhHHHHHHHHHHHHHhhhccccccccccccccccccchhhhHHHHHHHHH-HHHHHHHHHHHHHhhhh--hhh
Q 012002 326 HSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNL-LFTFVIAQAFLSMLCHF--KFG 402 (473)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~--~~~ 402 (473)
.....+..+.......... ....+..+.+.+|.+|++.|+++.|+.+.... +++.++|.+.+.+.+.. ++.
T Consensus 339 -----~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~ 412 (438)
T PRK09952 339 -----AQSIFWIVFFSIMLANIAH-DMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWH 412 (438)
T ss_pred -----cCChHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCch
Confidence 1111122221222211221 12223456778899999999999999776654 78899999999998754 244
Q ss_pred HHHHHHHHHHHHHHHHHhhccCC
Q 012002 403 IFLFFSGWVLIMSCFVFFLLPET 425 (473)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~ 425 (473)
..+.+.+++.+++.+..+..+++
T Consensus 413 ~~~~~~~~~~~i~~v~~~~~~~~ 435 (438)
T PRK09952 413 SVAIYLLAGCLISAMTALLMKDN 435 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHcccc
Confidence 55555666666666666666653
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-35 Score=277.91 Aligned_cols=354 Identities=10% Similarity=0.045 Sum_probs=256.6
Q ss_pred ccccCCCCCcccCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHh
Q 012002 15 RTQQGDDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVAAQNLAMLIVGRILLG 94 (473)
Q Consensus 15 ~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~l~~i~~~~~~~~~~~~~l~~~r~l~G 94 (473)
++..|++++|+|+|.++.|++.+.+.+++.+++++.|+++||+|||+++..+..+++++.+++++++|++.++++|+++|
T Consensus 29 ~~~lp~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~a~~~~~ll~~r~l~G 108 (393)
T PRK09705 29 GPLLPQLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMRELYPQSALLLSSALLGG 108 (393)
T ss_pred chhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHCcchHHHHHHHHHHH
Confidence 45667899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhhhHHHhhcCCCCCchhhHHHHHHHHHHHHHHHHHHhhhccccCCc-cchHHHHHhhhHHHHHHHHHhhccc
Q 012002 95 CGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTSHIKSQ-WGWRISLGLAGIPAALLTVGSLLVT 173 (473)
Q Consensus 95 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~-~~wr~~f~~~~~~~~~~~~~~~~~~ 173 (473)
++.+...+....++.+++| ++|+++++++..+..+|..+++.++. .+.++ .+||+.+.+.++..++..+.++...
T Consensus 109 ig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~---~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~~ 184 (393)
T PRK09705 109 VGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITP---WLVQHSETWYQTLAWWALPAVVALFAWWWQS 184 (393)
T ss_pred hHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHH---HHHHhcCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999997 77999999999999899999988843 33344 3799988776666554433333221
Q ss_pred -CChhhHHhhCChHHHHHHHHHHhCCCCchHHHHHHHHHHhhhhhcccchHHhhcccCchhHHHHHHHHHHhhcchhHHH
Q 012002 174 -DTPNSLIERGRFEEGKAVLRKIRGTDKIEPEFLELVEASRIAKEVKHPFRNLLKRRNRPQLVIAVALQIFQQCTGINAI 252 (473)
Q Consensus 174 -e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (473)
+.|+ ++ +++ +...++.++++. .+...+..++....+...
T Consensus 185 ~~~~~--------~~---------------------------~~~-~~~~~~~l~~~~----~~~l~~~~~~~~~~~~~~ 224 (393)
T PRK09705 185 AREVA--------SS---------------------------HKT-TTTPVRVVFTPR----AWTLGVYFGLINGGYASL 224 (393)
T ss_pred cCCCc--------cc---------------------------cCC-CcCCcccccCHh----HHHHHHHHHHHHHHHHHH
Confidence 2110 00 000 001112223322 333444444455566778
Q ss_pred HHhHHHHHHHcCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHhHHhHHHHHHHHHHHHHHhhhhccCCcccch
Q 012002 253 MFYAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKDHSEDLHT 332 (473)
Q Consensus 253 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (473)
..|.|.+++++|++..+++...+..+++.++++++.+++.||++||+....+..+..++..++... +.
T Consensus 225 ~~~lp~~l~~~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~------------~~ 292 (393)
T PRK09705 225 IAWLPAFYIEIGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWL------------PL 292 (393)
T ss_pred HHHHHHHHHHcCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHc------------cc
Confidence 888998888899999999999999999999999999999999999998887766665555443321 11
Q ss_pred hhHHHHHHHHHHHHHhhhccccccccccccccc-cccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhh-hhHHHHHHHH
Q 012002 333 GFAVLVVIMICTFISAFAWSWGPLGWLIPSETF-PLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHFK-FGIFLFFSGW 410 (473)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 410 (473)
..... .. .+...+.. ...+.......+.. |++.+++..|+.+..+.+++.++|.+.|++.|..+ +...+.+..+
T Consensus 293 ~~~~~-~~--~l~g~g~g-~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~ 368 (393)
T PRK09705 293 QLPVL-WA--MVCGLGLG-GAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHAL 368 (393)
T ss_pred hHHHH-HH--HHHHHhcc-chHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHH
Confidence 11111 11 11111111 22233333334555 46789999999999999999999999999999876 4554544444
Q ss_pred HHHH-HHHHHhhccCCCCC
Q 012002 411 VLIM-SCFVFFLLPETKNV 428 (473)
Q Consensus 411 ~~~~-~~~~~~~~~~~~~~ 428 (473)
+.+. ......+.||++++
T Consensus 369 ~~~~~~~~~~~~~~~~~~~ 387 (393)
T PRK09705 369 CVVGLMIITLRFAPARFPQ 387 (393)
T ss_pred HHHHHHHHHHHhccccccc
Confidence 4433 33345556665544
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=279.41 Aligned_cols=351 Identities=15% Similarity=0.095 Sum_probs=258.4
Q ss_pred ccccCCCCCcccCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHh
Q 012002 15 RTQQGDDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVAAQNLAMLIVGRILLG 94 (473)
Q Consensus 15 ~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~l~~i~~~~~~~~~~~~~l~~~r~l~G 94 (473)
+...|.+++++|+|+++.|++.+++.+++.++++++|+++||+|||+++..+.++.+++.++++++++++.++++|++.|
T Consensus 23 ~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 102 (377)
T TIGR00890 23 TLLAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIADSLAALYLTYGLAS 102 (377)
T ss_pred hhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45667889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhhhHHHhhcCCCCCchhhHHHHHHHHHHHHHHHHHHhhhccccCCccchHHHHHhhhHHHHHHHHHhh-ccc
Q 012002 95 CGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVGSL-LVT 173 (473)
Q Consensus 95 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~-~~~ 173 (473)
++.+..++.....+.+++| ++|+++.++...+.++|..+++++ ...+.+..+||+.|++.+++.++..+..+ +++
T Consensus 103 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~---~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~ 178 (377)
T TIGR00890 103 AGVGIAYGIALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPL---ITSVINLEGVPAAFIYMGIIFLLVIVLGAFLIG 178 (377)
T ss_pred HHHHHHHHhHHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHH---HHHHHhcccHHHHHHHHHHHHHHHHHHHHHhee
Confidence 9999998888999999997 579999999999999998876666 33344557899999999988877766644 455
Q ss_pred CChhhHHhhCChHHHHHHHHHHhCCCCchHHHHHHHHHHhhhhhcccchHHhhcccCchhHHHHHHHHHHhhcchhHHHH
Q 012002 174 DTPNSLIERGRFEEGKAVLRKIRGTDKIEPEFLELVEASRIAKEVKHPFRNLLKRRNRPQLVIAVALQIFQQCTGINAIM 253 (473)
Q Consensus 174 e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (473)
++|+.. .+++ + + .++++.+.++.++++. ++......++.........
T Consensus 179 ~~~~~~-~~~~-~-------------~--------------~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~ 225 (377)
T TIGR00890 179 YPPGQL-IKTN-I-------------E--------------VSVKDYTVWEMLRTPQ----FWVLYLSFFLNAVSGLLLI 225 (377)
T ss_pred cCchhc-cccC-c-------------c--------------cchhhhhHHHHHcCcc----HHHHHHHHHHHhHHHHHHH
Confidence 443210 0000 0 0 0000112334555544 3333333333333333444
Q ss_pred HhHHHHHHHcCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHhHHhHHHHHHHHHHHHHHhhhhccCCcccchh
Q 012002 254 FYAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKDHSEDLHTG 333 (473)
Q Consensus 254 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (473)
.+.+.+.++.|.+..+.+.......++.++++++.+++.||++||+.+..+.....++....... +..
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~------------~~~ 293 (377)
T TIGR00890 226 GLYKPYGQSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFI------------PML 293 (377)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHc------------ccc
Confidence 45566667788888888888999999999999999999999999999887777666665544432 111
Q ss_pred hHHHHHHHHHHHHHhhhccccccccccccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHH
Q 012002 334 FAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHFKFGIFLFFSGWVLI 413 (473)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (473)
................+ ...+....+..|.+|+++|+++.|+.+....++..++|.+.|.+.+..++...+...+++.+
T Consensus 294 ~~~~~~~~~~~~g~~~g-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~~ 372 (377)
T TIGR00890 294 NDVLFLATVALVFFTWG-GTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEIGFEYTFIVTGAFAL 372 (377)
T ss_pred hhHHHHHHHHHHHHHhc-cchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHH
Confidence 11111111222222222 22234456678999999999999999999999999999999999998887766666555554
Q ss_pred HH
Q 012002 414 MS 415 (473)
Q Consensus 414 ~~ 415 (473)
++
T Consensus 373 ~~ 374 (377)
T TIGR00890 373 TS 374 (377)
T ss_pred Hh
Confidence 43
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-35 Score=281.38 Aligned_cols=385 Identities=14% Similarity=0.166 Sum_probs=272.8
Q ss_pred hHhHhhhhccccCCCCCcccCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 012002 7 KFFPVVYRRTQQGDDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVAAQNLAML 86 (473)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~l~~i~~~~~~~~~~~~~l 86 (473)
.|++........|.+.+++|+++.+.+++.+++.++..++.++.|+++||+|||+++..+.++.+++.++++++++++.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (399)
T TIGR00893 6 NYLDRANLSFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAGAYVSL 85 (399)
T ss_pred HHHHHHhhhHhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHHcCHHHH
Confidence 34454555566677899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhhhhhhhhhHHHhhcCCCCCchhhHHHHHHHHHHHHHHHHHHhhhccccCCccchHHHHHhhhHHHHHHH
Q 012002 87 IVGRILLGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLT 166 (473)
Q Consensus 87 ~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~ 166 (473)
+++|++.|++.+...+....++.|++|+++|++++++.+...++|.++++.++ ..+.++.+||+.|++.+++.++..
T Consensus 86 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~---~~l~~~~~~~~~~~~~~~~~~~~~ 162 (399)
T TIGR00893 86 YILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLV---GWILIHFSWQWAFIIEGVLGIIWG 162 (399)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHH---HHHHHhCCchHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999994 444556789999999888877766
Q ss_pred HHh-hcccCChhhHHhhCChHHHHHH-HHHHhCCCCchHHHHHHHHHHhhhhhcccchHHhhcccCchhHHHHHHHHHHh
Q 012002 167 VGS-LLVTDTPNSLIERGRFEEGKAV-LRKIRGTDKIEPEFLELVEASRIAKEVKHPFRNLLKRRNRPQLVIAVALQIFQ 244 (473)
Q Consensus 167 ~~~-~~~~e~p~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (473)
+.. ++.||+|+.... ..++.++. .+....+ .+..++++......++.++++. ++...+..++
T Consensus 163 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~ 226 (399)
T TIGR00893 163 VLWLKFIPDPPQKAKW--LTEEEKYIVVGGLLAE----------QQGKGPSTPKKYQIKELLKDRR----VWGLALGQFL 226 (399)
T ss_pred HHhhheecCCCCcccc--CCHHHHhhcchhhccc----------cccccccCCCccchHHHhcCHH----HHHHHHHHHH
Confidence 654 446665532111 11111000 0000000 0000111112233445555443 5555566666
Q ss_pred hcchhHHHHHhHHHHHHH-cCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHhHHh-HHHHHHHHHHHHHHhhh
Q 012002 245 QCTGINAIMFYAPVLFKT-LGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAG-IQMFLSQTVIAIILGIK 322 (473)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 322 (473)
..........+.|.++++ .|.+..+.+.......++.+++.++.+++.||++||+...... ....++...........
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (399)
T TIGR00893 227 VNIGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLLMFAT 306 (399)
T ss_pred HHhHHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHh
Confidence 666777788888887755 8999889999999999999999999999999999986222111 11111111111111000
Q ss_pred hccCCcccchhhHHHHHHHHHHHHHhhhccccccccccccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhh-h
Q 012002 323 VKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHFK-F 401 (473)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 401 (473)
. .....+. ........ .+..+..+..+.+..|.+|++.|+++.|+.+....++..++|.+.|.+.+..+ +
T Consensus 307 --~-----~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g~~ 377 (399)
T TIGR00893 307 --N-----YVNIPYA-ALALVALG-FFGLGAGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATTGSF 377 (399)
T ss_pred --c-----cchhHHH-HHHHHHHH-HhchhhhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCCCch
Confidence 0 0111111 22222222 22222456778888999999999999999999999999999999999999877 6
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 012002 402 GIFLFFSGWVLIMSCFVF 419 (473)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~ 419 (473)
...+.+.++..+.+.+..
T Consensus 378 ~~~~~~~~~~~~~~~~~~ 395 (399)
T TIGR00893 378 AGALMVVAALALIGALSY 395 (399)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 666655555554444443
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=283.07 Aligned_cols=379 Identities=15% Similarity=0.126 Sum_probs=254.7
Q ss_pred hhhhccccCCCCCcccCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 012002 11 VVYRRTQQGDDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVAAQNLAMLIVGR 90 (473)
Q Consensus 11 ~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~l~~i~~~~~~~~~~~~~l~~~r 90 (473)
........|.+.+++|+|+.+.+++.+.+.+++.+++++.|+++||+|||++++.+.++.+++.++++++++++.+++.|
T Consensus 36 ~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 115 (496)
T PRK03893 36 FVLITLVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLFSVGTLACGFAPGYWTLFIAR 115 (496)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 33444556778889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhhhhhhhhHHHhhcCCCCCchhhHHHHHHHHHHHHHHHHHHhhhccccCCccchHHHHHhhhHHHHHHHHHhh
Q 012002 91 ILLGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVGSL 170 (473)
Q Consensus 91 ~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~ 170 (473)
++.|++.+...+....++.|++|+++|++++++...+.++|..+++.+ ...+.++++||+.|++..+..++..+...
T Consensus 116 ~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~---~~~l~~~~~w~~~f~~~~~~~~~~~~~~~ 192 (496)
T PRK03893 116 LVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQV---YSLVVPVWGWRALFFIGILPIIFALWLRK 192 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhccCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999 44455678999999886555444444445
Q ss_pred cccCChhhHHhhCChHHHHHHHHHHhCCCCchHHHHHHHH---H--Hhhhhhcccch-------------HHh-h-cccC
Q 012002 171 LVTDTPNSLIERGRFEEGKAVLRKIRGTDKIEPEFLELVE---A--SRIAKEVKHPF-------------RNL-L-KRRN 230 (473)
Q Consensus 171 ~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~~~~~~~~~~~-------------~~~-~-~~~~ 230 (473)
.+||++++..++++.++.++..+.....+........... . ..........+ ... . ....
T Consensus 193 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (496)
T PRK03893 193 NLPEAEDWKEKHAGKAPVRTMVDILYRGEHRIINILLTLAAAAALWFCFAGNLQNAAIVAVLGLLCAAIFISFMVQSSGK 272 (496)
T ss_pred hCCCchhhhhhccccccchhHHHHHhcchhHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHhccc
Confidence 5677665432221111111111110000000000000000 0 00000000000 000 0 0111
Q ss_pred chhHHHHHHHHHHhhcchhHHHHHhHHHHHH-HcCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHhHHhHHHH
Q 012002 231 RPQLVIAVALQIFQQCTGINAIMFYAPVLFK-TLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMF 309 (473)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~ 309 (473)
+++.........+...........+.|.+++ ++|++..+.+...+...++.+++.++.|++.||++||+.+..+..+..
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~ 352 (496)
T PRK03893 273 RWPTGVMLMVVVLFAFLYSWPIQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQ 352 (496)
T ss_pred chhHHHHHHHHHHHHHhccchHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 1111222222222222222235567888885 689999999999999999999999999999999999998877655544
Q ss_pred HHHHHHHHHHhhhhccCCcccchhhHHHHHHHHHHHHHhhhccccccccccccccccccchhhhHHHHHHHHHHHHHHHH
Q 012002 310 LSQTVIAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIA 389 (473)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 389 (473)
+..+.+... .....+.. ....+.......+..+....++.|.+|++.|++++|+.+....+++.++|
T Consensus 353 ~~~~~~~~~------------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp 419 (496)
T PRK03893 353 LLIIPVFAI------------GGANVWVL-GLLLFFQQMLGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAP 419 (496)
T ss_pred HHHHHHhhc------------cccHHHHH-HHHHHHHHHHhcccchhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHH
Confidence 443322221 11111211 11222222222223344556778999999999999999999999999999
Q ss_pred HHHHHHhhhhhhhHHH
Q 012002 390 QAFLSMLCHFKFGIFL 405 (473)
Q Consensus 390 ~~~~~~~~~~~~~~~~ 405 (473)
.+.|.+.++.++...+
T Consensus 420 ~l~g~l~~~~g~~~~~ 435 (496)
T PRK03893 420 ILGALIAQRLDLGTAL 435 (496)
T ss_pred HHHHHHhccCChHHHH
Confidence 9999999988866544
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-35 Score=277.88 Aligned_cols=371 Identities=14% Similarity=0.111 Sum_probs=256.9
Q ss_pred hHhhhhccccCCCCCcccCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 012002 9 FPVVYRRTQQGDDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVAAQNLAMLIV 88 (473)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~l~~i~~~~~~~~~~~~~l~~ 88 (473)
++........|.+++++|+++.+.+++.+.+.++..+++++.|+++||+|||++++++.++.+++.++++++++++.+++
T Consensus 26 ~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 105 (405)
T TIGR00891 26 FDFFLVALVLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLFSAGTLACGFAPGYITMFI 105 (405)
T ss_pred HHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 34444555667888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhhhhhhhhhHHHhhcCCCCCchhhHHHHHHHHHHHHHHHHHHhhhccccCCccchHHHHHhhhHHHHHHHHH
Q 012002 89 GRILLGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVG 168 (473)
Q Consensus 89 ~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~ 168 (473)
.|++.|++.+...+...+++.|++|+++|++++++.+.+..+|.++++.++.......+ .+||+.|++.+++.++..+.
T Consensus 106 ~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~-~~w~~~f~~~~~~~~~~~~~ 184 (405)
T TIGR00891 106 ARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWG-DGWRALFFISILPIIFALWL 184 (405)
T ss_pred HHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-ccHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998544332211 24999999877766666555
Q ss_pred hhcccCChhhHHhhCChHHHHHHHHHHhCCCCchHHHHHHHHHHhhhhhcccchHHhhcccCchhHHHHHHHHHHhhcch
Q 012002 169 SLLVTDTPNSLIERGRFEEGKAVLRKIRGTDKIEPEFLELVEASRIAKEVKHPFRNLLKRRNRPQLVIAVALQIFQQCTG 248 (473)
Q Consensus 169 ~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (473)
...+||++++...+++.++..+..++..+.+... . ...++.....++ +.++.+..+.............
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~------~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 253 (405)
T TIGR00891 185 RKNIPEAEDWKEKHAGKALVRTMVDILYGGEHRI---A------NIVMTLAAAMVQ--SAGKRWPTFVYLVVLVLFANLY 253 (405)
T ss_pred HHhCCCChhHHHHhhhhhhhhhHHHHHhccchhh---h------hhhhhhhHHhhh--hhhhhhHHHHHHHHHHHHHHHH
Confidence 6667887754332222111111111111100000 0 000000000111 0111111122222222222223
Q ss_pred hHHHHHhHHHHHH-HcCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHhHHhHHHHHHHHHHHHHHhhhhccCC
Q 012002 249 INAIMFYAPVLFK-TLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKDHS 327 (473)
Q Consensus 249 ~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (473)
......+.|.++. +.|++..+.+.......++.+++.++.+++.||++||+.+..+.....+........
T Consensus 254 ~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~--------- 324 (405)
T TIGR00891 254 SHPIQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAI--------- 324 (405)
T ss_pred HhhhhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHHh---------
Confidence 3344556676664 589999999999999999999999999999999999998877665443322221111
Q ss_pred cccchhhHHHHHHHHHHHHHhhhccccccccccccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhh-hhHHH
Q 012002 328 EDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHFK-FGIFL 405 (473)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 405 (473)
. ...+......++ ......+..+....+..|.+|++.|++++|+.+....++..++|.+.|.+.++.+ +...+
T Consensus 325 ---~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~g~~~~~~ 398 (405)
T TIGR00891 325 ---G-ANVAVLGLGLFF-QQMLVQGIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALLAQRLDEYGTAL 398 (405)
T ss_pred ---C-CchHHHHHHHHH-HHHHHccchhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhccccchhH
Confidence 1 111222222122 2222223334555677899999999999999999999999999999999999887 54433
|
|
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-35 Score=250.48 Aligned_cols=395 Identities=18% Similarity=0.184 Sum_probs=298.3
Q ss_pred hccccCCCCCcccCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 012002 14 RRTQQGDDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVAAQNLAMLIVGRILL 93 (473)
Q Consensus 14 ~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~l~~i~~~~~~~~~~~~~l~~~r~l~ 93 (473)
..-+.|..++.++.+..|..++......+..+++..+|.++|++|||+.+.+.....++..++.+.++|+..+++.|.+.
T Consensus 97 ~s~i~~~l~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~grr~~f~~T~l~t~v~~~is~~spnf~~L~~f~~l~ 176 (528)
T KOG0253|consen 97 LSLILPALDEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTIGRRKGFNLTFLVTGVFGVISGASPNFASLCVFRALW 176 (528)
T ss_pred HHHHHHHHHhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhhhhcchhhhhhHHHHHHHHHhhcCCCCeehhhHHHHHH
Confidence 34566778889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhhhhHHHhhcCCCCCchhhHHHHHHHHHHHHHHHHHHhhhccccCCccchHHHHHhhhHHHHHHHHHhhccc
Q 012002 94 GCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVGSLLVT 173 (473)
Q Consensus 94 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~ 173 (473)
|+|.|+ .|...++-.|..|..+|...+-.. ..+.+|.+....+++.. ..++||||.....+.+..+.+...+++|
T Consensus 177 ~~g~gg-~pv~~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~law~v---m~~~gwr~~l~~~~~pl~~~a~f~~w~~ 251 (528)
T KOG0253|consen 177 GFGVGG-LPVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLAWGV---MSNFGWRYLLFTSSTPLMFAARFLVWVY 251 (528)
T ss_pred hccCCC-ccHhHHHHHHhccCcCCCcchhHH-HHHHHHHHHHHHHHHHH---HHhhhHHHHHHHHHhHHHHHHHHHhhcc
Confidence 999998 899999999999999999877777 88999999999986654 3457999999999988888888888999
Q ss_pred CChhhHHhhCChHHHHHHHHHHhCCCCchH-------HHH--------HHHHHH-hhhhhcccchHHhhcccCchhHHHH
Q 012002 174 DTPNSLIERGRFEEGKAVLRKIRGTDKIEP-------EFL--------ELVEAS-RIAKEVKHPFRNLLKRRNRPQLVIA 237 (473)
Q Consensus 174 e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~--------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (473)
||||++..+++++++.+.++++...|..+- +.. +..+.+ +..++......+++..+.++. .+.
T Consensus 252 ESpRf~~~~G~~~kAletL~kiArmNg~qlplgvl~~s~~~~~e~e~~~~~~~~~~a~ke~rg~~~nLlsp~lrkt-tll 330 (528)
T KOG0253|consen 252 ESPRFYLAKGDDYKALETLHKIARMNGKQLPLGVLESSAIDRQEQEESDLDDSKSSAAKEVRGGTTNLLSPKLRKT-TLL 330 (528)
T ss_pred cCcchhhhcCChHHHHHHHHHHHHhcCCCCCcceeeeehhhhhhhhhhchhhhhhccccccccchHhhcChHHHHH-HHH
Confidence 999999999999999999998876653211 010 011111 112333455667776655555 344
Q ss_pred HHHHHHhhcchhHHHHHhHHHHHHHcC---C-----------------CCcchHHHHHHHHHHHHHHHHHHHHHHhhcCc
Q 012002 238 VALQIFQQCTGINAIMFYAPVLFKTLG---F-----------------GGSASLYSTVITGAVNVLSTLVSIYSVDKVGR 297 (473)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~g---~-----------------~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~ 297 (473)
....++.....+++.......+.+... . +......-..+..+..+.|.++.++++||+||
T Consensus 331 lw~iwfgnafsyyg~VLlttelfqsgd~c~~~~r~~p~e~e~~~~c~~s~~~dYrdllitslaefPGlLIt~~iverlGR 410 (528)
T KOG0253|consen 331 LWRIWFGNAFSYYGSVLLTTELFQSGDACPLYNRFLPTELETRANCPLSVAKDYRDLLITSLAEFPGLLITGVIVERLGR 410 (528)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHhccCccccchhcchhHHHhhhcCCccchhHHHHHHHHHHhhCCchhHHHHHHHHhcc
Confidence 444555555555555555554444321 1 11112233456778899999999999999999
Q ss_pred chhHhHHhHHHHHHHHHHHHHHhhhhccCCcccchhhHHHHHHHHHHHHHhhhccccccccccccccccccchhhhHHHH
Q 012002 298 RMLLLEAGIQMFLSQTVIAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVT 377 (473)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 377 (473)
|+.+...+++++++.+++.... ..+. .....+..-.+...++ .+.+.|+.|++|+..|+++.|..
T Consensus 411 KkTMal~l~~f~iflfll~~c~------------~rn~--~tvllf~arafisg~f-qvaYvYtPEVyPTavRatgvGtc 475 (528)
T KOG0253|consen 411 KKTMALSLILFGIFLFLLTTCK------------TRNA--YTVLLFTARAFISGAF-QVAYVYTPEVYPTAVRATGVGTC 475 (528)
T ss_pred hhHHHHHHHHHHHHHHHHHHhc------------Ccch--hHHHHHHHHHHHhchh-eEEEEecCcccchhhhhcchhhh
Confidence 9999998888888777666542 1111 1222222222333333 36689999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhccCCCCCCh
Q 012002 378 VCVNLLFTFVIAQAFLSMLCHFKFGIFLFFSGWVLIMSCFVFFLLPETKNVPI 430 (473)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (473)
...+.+|+++.|.+. ...+...+...+++.+++++.++...++-.|+|+|.+
T Consensus 476 SsmaRIggI~~p~iA-~~~e~s~sl~i~vy~~~~ilagIavcffPiEtkGR~l 527 (528)
T KOG0253|consen 476 SSMARIGGIFSPVIA-MRAELSTSLPIFVYGALFILAGIAVCFFPIETKGRSL 527 (528)
T ss_pred hhHHhhhhhhhhHHH-HHhccceeehHHHHHHHHHHHHHHheeeeeccCCCCC
Confidence 999999999999988 4444444556677777777777777777678888753
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-34 Score=274.46 Aligned_cols=350 Identities=19% Similarity=0.242 Sum_probs=233.6
Q ss_pred hHhHhhhhccccCCCCCcccCCCchhHHHH-HHHH-----HHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHh
Q 012002 7 KFFPVVYRRTQQGDDSNYCKYDNQGLQLFT-SSLY-----LAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVAA 80 (473)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~-s~~~-----~~~~~~~~~~g~l~Dr~Grr~~l~~~~~l~~i~~~~~~~~ 80 (473)
++++....+...|.+.++++.++.+.+.+. +... ++..+++++.|+++||+|||+.++.+.+++++++++++++
T Consensus 27 ~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~l~~~~ 106 (434)
T PRK15075 27 EMFDFFLFGFYATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKGLIVTLSIMASGTLLIAFV 106 (434)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHhC
Confidence 445556667778899999999888876543 3322 2234789999999999999999999999999999999999
Q ss_pred hhHH--------HHHHHHHHHhhhhhhhhhhhhHHHhhcCCCCCchhhHHHHHHHHHHHHHHHHHHhhhcccc-----CC
Q 012002 81 QNLA--------MLIVGRILLGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTSHI-----KS 147 (473)
Q Consensus 81 ~~~~--------~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~-----~~ 147 (473)
++++ .++++|+++|++.+...+....+++|++|+++|++++++...+.++|..+++.++...... .+
T Consensus 107 ~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~g~~~g~~l~~~~~~~~~~ 186 (434)
T PRK15075 107 PGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAVVFAALLGYLLNQWLSPAQMA 186 (434)
T ss_pred CcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHh
Confidence 9987 4688999999999999999999999999999999999999988888888887776544321 24
Q ss_pred ccchHHHHHhhhHHHHHHHHHhhcccCChhhHHhhCChHHHHHHHHHHhCCCCchHHHHHHHHHHhhhhhcccchHHhhc
Q 012002 148 QWGWRISLGLAGIPAALLTVGSLLVTDTPNSLIERGRFEEGKAVLRKIRGTDKIEPEFLELVEASRIAKEVKHPFRNLLK 227 (473)
Q Consensus 148 ~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (473)
.+|||++|++..+...+........||++++..++ + +.+.+..++...+
T Consensus 187 ~~gWr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~------------------------------~-~~~~~~~~~~~~~ 235 (434)
T PRK15075 187 EWGWRIPFLIGCLIVPFIFLIRRSLEETEEFLARK------------------------------H-RPSMREIFRSLAA 235 (434)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHhcCCCHHHHHhh------------------------------h-ccccccHHHHHHH
Confidence 68999999985544322222222233332110000 0 0000111111222
Q ss_pred ccCchhHHHHHHHHHHhhcchhHHHHHhHHHHHHH-cCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHhHHhH
Q 012002 228 RRNRPQLVIAVALQIFQQCTGINAIMFYAPVLFKT-LGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGI 306 (473)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~ 306 (473)
+ ++.........+.....++....|.|.++++ .|++..+.+.......++.+++.++.|+++||++||+.+..+..
T Consensus 236 ~---~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~ 312 (434)
T PRK15075 236 N---WRIVLAGMLMVAMTTVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTV 312 (434)
T ss_pred h---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 1 1222222333333445566778889988876 89998888888888899999999999999999999998776544
Q ss_pred HHHHHHHHHHHHHhhhhccCCcccchhhHHHHHHHHHHHHHhhhccccccccccccccccccchhhhHHHHHHHHHH-HH
Q 012002 307 QMFLSQTVIAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLL-FT 385 (473)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~-~~ 385 (473)
...+.......... . ......... ...+...++. ...+..+.+..|.+|++.|+++.++.+..... ++
T Consensus 313 ~~~~~~~~~~~~~~----~-----~~~~~~~~~-~~~~~~~~~g-~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g 381 (434)
T PRK15075 313 LAILTAYPALSWLV----A-----APSFARMLA-VELWLSFLYG-SYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFG 381 (434)
T ss_pred HHHHHHHHHHHHHH----c-----CCchHHHHH-HHHHHHHHHH-HHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHh
Confidence 43222111111100 0 111111111 1111111111 22233445678999999999999997666554 58
Q ss_pred HHHHHHHHHHhhhhhh
Q 012002 386 FVIAQAFLSMLCHFKF 401 (473)
Q Consensus 386 ~~~~~~~~~~~~~~~~ 401 (473)
.++|.+.+.+.+..++
T Consensus 382 ~~~p~~~g~i~~~~g~ 397 (434)
T PRK15075 382 GFTPAISTWLIHVTGD 397 (434)
T ss_pred hhHHHHHHHHHHhcCC
Confidence 8899999999998764
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-34 Score=275.16 Aligned_cols=379 Identities=16% Similarity=0.069 Sum_probs=253.7
Q ss_pred ccCCCCCcccCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhh----hHHHHHHHHHH
Q 012002 17 QQGDDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVAAQ----NLAMLIVGRIL 92 (473)
Q Consensus 17 ~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~l~~i~~~~~~~~~----~~~~l~~~r~l 92 (473)
..|.+.++ |+++.+.+++.+.+.+++.++++++|+++||+|||++++++.++.+++.+++++++ +++.+++.|++
T Consensus 51 ~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l 129 (452)
T PRK11273 51 AMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFL 129 (452)
T ss_pred hhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHH
Confidence 45667777 99999999999999999999999999999999999999999999999999988764 78889999999
Q ss_pred HhhhhhhhhhhhhHHHhhcCCCCCchhhHHHHHHHHHHHHH-HHHHHhhhccccCCccchHHHHHhhhHHHHHHHHH-hh
Q 012002 93 LGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGIL-FANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVG-SL 170 (473)
Q Consensus 93 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~-~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~-~~ 170 (473)
.|++.+...+.....+.|++|+++|++++++++.+.++|.. .+++++.... ...+||+.|++.+++.++..++ .+
T Consensus 130 ~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~---~~~gw~~~f~i~~~~~~~~~~l~~~ 206 (452)
T PRK11273 130 CGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMA---WFNDWHAALYMPAFAAILVALFAFA 206 (452)
T ss_pred HHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH---HhccHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998888888999999999999999999999999874 4555422221 1248999999988877765544 56
Q ss_pred cccCChhhHHhhCChHHHHHHHHHHhCCCCchHHHHHHHHHHhhhhhcccchHH-----hhcccCchhHHHHHHHHHHhh
Q 012002 171 LVTDTPNSLIERGRFEEGKAVLRKIRGTDKIEPEFLELVEASRIAKEVKHPFRN-----LLKRRNRPQLVIAVALQIFQQ 245 (473)
Q Consensus 171 ~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~ 245 (473)
++||+|+....+ +.++.++ +.+. + .+.+++.+.+.++ ++|++. ++...+..++.
T Consensus 207 ~~~~~~~~~~~~-~~~~~~~------~~~~---~-------~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~~~~~ 265 (452)
T PRK11273 207 MMRDTPQSCGLP-PIEEYKN------DYPD---D-------YNEKHEQELTAKQIFMQYVLPNKL----LWYIAIANVFV 265 (452)
T ss_pred HccCCHhhcCCC-Chhhhhh------cccc---c-------cccccCCCccHHHHHHHHHHcChH----HHHHHHHHHHH
Confidence 678877532111 1111000 0000 0 0000001111222 333333 55555555555
Q ss_pred cchhHHHHHhHHHHHHH-cCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhc--CcchhHhHH-hHHHHHHHHHHHHHHhh
Q 012002 246 CTGINAIMFYAPVLFKT-LGFGGSASLYSTVITGAVNVLSTLVSIYSVDKV--GRRMLLLEA-GIQMFLSQTVIAIILGI 321 (473)
Q Consensus 246 ~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~ 321 (473)
....+....|.|.++++ .|++..+++.......++.+++.++.|+++||+ +||+..... ..+..++...+...
T Consensus 266 ~~~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~~~~~~~--- 342 (452)
T PRK11273 266 YLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWLN--- 342 (452)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHHHHHh---
Confidence 55556777899998876 789988888888888899999999999999999 444432221 11112221111110
Q ss_pred hhccCCcccchhhHHHHHHHHHHHHHhhhccccccccccccccccccchhhhHHHHHHHHHHHHHH-HHHHHHHHhhhhh
Q 012002 322 KVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFV-IAQAFLSMLCHFK 400 (473)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 400 (473)
.....+............ ..+.......+..|.+|++.||++.|+.+...++++.+ +|.+.|.+.|+.+
T Consensus 343 ---------~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g 412 (452)
T PRK11273 343 ---------PAGNPTVDMACMIVIGFL-IYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFG 412 (452)
T ss_pred ---------cccChHHHHHHHHHHHHH-HHhHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhc
Confidence 111111111112221111 11111122344569999999999999999999888765 7999999999988
Q ss_pred hhHHHHHHHHHHHHHHHHHhhccCCCCCChHHH
Q 012002 401 FGIFLFFSGWVLIMSCFVFFLLPETKNVPIEEM 433 (473)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (473)
+...+...+.+.+++++......+.++|+.||.
T Consensus 413 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (452)
T PRK11273 413 WDGGFMVMIGGSILAVILLIVVMIGEKRHHEEL 445 (452)
T ss_pred chHHHHHHHHHHHHHHHHHHHHhccccchHHHH
Confidence 776666555555555555555555555555544
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-33 Score=266.07 Aligned_cols=348 Identities=13% Similarity=0.073 Sum_probs=245.3
Q ss_pred ccccCCCCCcccCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHh
Q 012002 15 RTQQGDDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVAAQNLAMLIVGRILLG 94 (473)
Q Consensus 15 ~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~l~~i~~~~~~~~~~~~~l~~~r~l~G 94 (473)
....|.+.+|+|++.++.|++.+.+.+++.++++++|+++||+|||+++..+..+.+++.+++++++|++.+++.|+++|
T Consensus 23 ~~~l~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~~~~~~~~~l~~~r~l~G 102 (382)
T PRK10091 23 MGVLTELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFTLSSSYLMLAIGRLVSG 102 (382)
T ss_pred HhChHHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 44667888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhhhHHHhhcCCCCCchhhHHHHHHHHHHHHHHHHHHhhhccccCCccchHHHHHhhhHHHHHHHHH-hhccc
Q 012002 95 CGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVG-SLLVT 173 (473)
Q Consensus 95 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~-~~~~~ 173 (473)
++.+...+....++.|++++++|++++++...+..+|..++++++ +.+.+..+||+.|++.+++.++..+. .+++|
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~---~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~lp 179 (382)
T PRK10091 103 FPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLG---TYLSQEFSWRYTFLLIAVFNIAVLASIYFWVP 179 (382)
T ss_pred hhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHH---HHHhhhccHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 999998999999999999999999999999999999999999984 44555679999999998877766554 44577
Q ss_pred CChhhHHhhCChHHHHHHHHHHhCCCCchHHHHHHHHHHhhhhhcccchHHhhcccCchhHHHHHHHHHHhhcchhHHHH
Q 012002 174 DTPNSLIERGRFEEGKAVLRKIRGTDKIEPEFLELVEASRIAKEVKHPFRNLLKRRNRPQLVIAVALQIFQQCTGINAIM 253 (473)
Q Consensus 174 e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (473)
|.++. .+. + . +.. .+.++++. .+......++.........
T Consensus 180 ~~~~~----~~~-~-----------------~-------------~~~-~~~~~~~~----~~~~~~~~~~~~~~~~~~~ 219 (382)
T PRK10091 180 DIRDE----AKG-G-----------------L-------------REQ-FHFLRSPA----PWLIFAATMFGNAGVFAWF 219 (382)
T ss_pred CCCcc----ccc-C-----------------H-------------HHH-HHHhcChH----HHHHHHHHHHHHHHHHHHH
Confidence 65310 000 0 0 000 11222222 2222222222222333333
Q ss_pred HhHHHHH-HHcCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHhHHhHHHHHHHHHHHHHHhhhhccCCcccch
Q 012002 254 FYAPVLF-KTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKDHSEDLHT 332 (473)
Q Consensus 254 ~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (473)
.+.+.++ +.+|+++.+.+......+++.++++++.+++.||+++|+.+..+..+..++.+++.... +
T Consensus 220 ~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~~~~~-----------~- 287 (382)
T PRK10091 220 SYIKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIVLALLMLFFFG-----------G- 287 (382)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheeccccCchhHHHHHHHHHHHHHHHHHHHH-----------h-
Confidence 4444444 45899999999999999999999999999999999999998877776666654443321 1
Q ss_pred hhHHHHHHHHHHHHHhhhccccccccccccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhh-hhhhHHHHHHHHH
Q 012002 333 GFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCH-FKFGIFLFFSGWV 411 (473)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 411 (473)
. .+......+....+......+.......+..|.+.++.+ ..+....+|..++|.+.|.+.|. .++...+...++.
T Consensus 288 ~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~Gp~~~G~l~~~~~~~~~~~~~~~~~ 364 (382)
T PRK10091 288 M-KTASLIFAFICCAGLFALSAPLQILLLQNAKGGELLGAA--GGQIAFNLGSAIGAYCGGMMLTLGLAYNYVALPAALL 364 (382)
T ss_pred h-HHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCcchHHHHH--HHHHHHHHHHHHHHHHhHHHHHcccCcchHHHHHHHH
Confidence 1 112222222222222111222222333444455555544 44677889999999999999986 4566655555444
Q ss_pred HHHHHHHHh
Q 012002 412 LIMSCFVFF 420 (473)
Q Consensus 412 ~~~~~~~~~ 420 (473)
.++.+....
T Consensus 365 ~~~~~~~~~ 373 (382)
T PRK10091 365 SFAAMSSLL 373 (382)
T ss_pred HHHHHHHHH
Confidence 444444333
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-34 Score=275.95 Aligned_cols=370 Identities=13% Similarity=0.084 Sum_probs=254.5
Q ss_pred cccCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHh--hhHHHHHHHHHHHhhhhhhhh
Q 012002 24 YCKYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVAA--QNLAMLIVGRILLGCGVGFAN 101 (473)
Q Consensus 24 ~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~l~~i~~~~~~~~--~~~~~l~~~r~l~G~~~~~~~ 101 (473)
|++++..+.|++.+.+.+++.+++++.|+++||+|||+++..+.++++++.+++.++ .+++.+++.|+++|++.+...
T Consensus 70 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~ 149 (465)
T TIGR00894 70 NFKWSGALQGLILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVS 149 (465)
T ss_pred CCCCCHHHhhHHHHHHHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccch
Confidence 789999999999999999999999999999999999999999999999999887654 568889999999999999999
Q ss_pred hhhhHHHhhcCCCCCchhhHHHHHHHHHHHHHHHHHHhhhccccCCc-cchHHHHHhhhHHHHHHHHHhhc-ccCChhhH
Q 012002 102 QAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTSHIKSQ-WGWRISLGLAGIPAALLTVGSLL-VTDTPNSL 179 (473)
Q Consensus 102 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~-~~wr~~f~~~~~~~~~~~~~~~~-~~e~p~~~ 179 (473)
+....++.||+|+++|++++++...+..+|.++++++ .+.+.+. .+||+.|++.++++++..+++++ .+|+|+..
T Consensus 150 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l---~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~p~~~ 226 (465)
T TIGR00894 150 PATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPI---SGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPADDPSIH 226 (465)
T ss_pred hhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhccCCCCeehhhhhHHHHHHHHHHHHHhcCCcccC
Confidence 9999999999999999999999999999999999999 4445555 49999999999988877766544 55666421
Q ss_pred HhhCChHHHHHHHHHHhCCCCchHHHHHHHHHHhhhhhcccchHHhhcccCchhHHHHHHHHHHhhcchhHHHHHhHHHH
Q 012002 180 IERGRFEEGKAVLRKIRGTDKIEPEFLELVEASRIAKEVKHPFRNLLKRRNRPQLVIAVALQIFQQCTGINAIMFYAPVL 259 (473)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (473)
. +.+.+| ++..++. .++.+.+.+.+.+++++++++. ++...+..++.....+.+..|.|.+
T Consensus 227 ~-~~~~~~-~~~i~~~-------------~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~lp~~ 287 (465)
T TIGR00894 227 P-CISKFE-KKYINSS-------------LQGQKGSTRQSLPIKAIPKSLP----VWAIWFAIFGHFWLYTILPTYLPTF 287 (465)
T ss_pred C-CCCHHH-HHHHHhh-------------cccccCCCCCCCCHHHHhcCHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 111111 1111000 0000001112335666666654 6667777777777778888899988
Q ss_pred HHH-cCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHhH---HhHHHHHHHHHHHHHHhhhhccCCcccchhhH
Q 012002 260 FKT-LGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLE---AGIQMFLSQTVIAIILGIKVKDHSEDLHTGFA 335 (473)
Q Consensus 260 ~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (473)
+++ +|++..+++...++..++.+++.++.|+++||+++|+.... ......++............. .....
T Consensus 288 l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~ 361 (465)
T TIGR00894 288 ISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYALPY------LSAAF 361 (465)
T ss_pred HHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH------cCCch
Confidence 865 89999999999999999999999999999999865432211 011111111111110000000 01111
Q ss_pred HHHHHHHHHHHHhhhccccccccccccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhh---hhhHHHHHHHHHH
Q 012002 336 VLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHF---KFGIFLFFSGWVL 412 (473)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 412 (473)
...+....+...+. ....+..+....|..|+ .+|.+.|+.+..+.+++.++|.+.|.+.+.. .+...+.+.++..
T Consensus 362 ~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~-~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~ 439 (465)
T TIGR00894 362 YLTIIILTLANAVS-SGPLAGVLINSLDLAPR-FLGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFVN 439 (465)
T ss_pred HHHHHHHHHHHHHh-hhhhhhhhhchhhcChh-HHHHHHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHHH
Confidence 22222222222222 11222333444566665 8999999999999999999999999887653 2445555555555
Q ss_pred HHHHHHHhhcc
Q 012002 413 IMSCFVFFLLP 423 (473)
Q Consensus 413 ~~~~~~~~~~~ 423 (473)
+++.+......
T Consensus 440 ~i~~i~~~~~~ 450 (465)
T TIGR00894 440 ILCVIFYLIFG 450 (465)
T ss_pred HHHHHHeeeee
Confidence 55555554443
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-33 Score=261.79 Aligned_cols=339 Identities=17% Similarity=0.174 Sum_probs=244.1
Q ss_pred cccCCCCCcccCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhh
Q 012002 16 TQQGDDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVAAQNLAMLIVGRILLGC 95 (473)
Q Consensus 16 ~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~l~~i~~~~~~~~~~~~~l~~~r~l~G~ 95 (473)
...|++.+++|+++++.|+..+.+.++..+++++.|+++||+|||++++.+.++.+++.++++++++++.++++|+++|+
T Consensus 41 ~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~ 120 (394)
T PRK10213 41 SLLTPMAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSFANSFSLLLIGRACLGL 120 (394)
T ss_pred hhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHH
Confidence 34567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhhHHHhhcCCCCCchhhHHHHHHHHHHHHHHHHHHhhhccccCCccchHHHHHhhhHHHHHHHHHh-hcccC
Q 012002 96 GVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVGS-LLVTD 174 (473)
Q Consensus 96 ~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~-~~~~e 174 (473)
+.+...+...+++.|++|+++|++++++...+.++|.+++|+++ ..+.+.+|||+.|++.+++.++..+.. ...||
T Consensus 121 ~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~---~~l~~~~gw~~~f~~~~~l~~~~~l~~~~~~p~ 197 (394)
T PRK10213 121 ALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLG---SFLGELIGWRNVFNAAAVMGVLCIFWIIKSLPS 197 (394)
T ss_pred hhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhhcCHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 99999999999999999999999999999999999999999994 445556799999999887776655443 33566
Q ss_pred ChhhHHhhCChHHHHHHHHHHhCCCCchHHHHHHHHHHhhhhhcccchHHhhcccCchhHHHHHHHHHHhhcchhHHHHH
Q 012002 175 TPNSLIERGRFEEGKAVLRKIRGTDKIEPEFLELVEASRIAKEVKHPFRNLLKRRNRPQLVIAVALQIFQQCTGINAIMF 254 (473)
Q Consensus 175 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (473)
+|++ + + +...+.++.++++. ++...+..++..........
T Consensus 198 ~~~~-----~--~-----------------------------~~~~~~~~~l~~~~----~~~~~~~~~~~~~~~~~~~~ 237 (394)
T PRK10213 198 LPGE-----P--S-----------------------------HQKQNTFRLLQRPG----VMAGMIAIFMSFAGQFAFFT 237 (394)
T ss_pred CCcc-----c--c-----------------------------cchhHHHHHhcCHH----HHHHHHHHHHHHHHHHHHHH
Confidence 4310 0 0 00011233444433 33332223333333344444
Q ss_pred h-HHHHHHHcCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHhHHhHHHHHHHHHHHHHHhhhhccCCcccchh
Q 012002 255 Y-APVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKDHSEDLHTG 333 (473)
Q Consensus 255 ~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (473)
+ .|.+.+++|+++.+.+......+++.+++.++.+++.||.+ |+.+.............+... ..
T Consensus 238 ~~~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~-~~~l~~~~~~~~~~~~~l~~~------------~~- 303 (394)
T PRK10213 238 YIRPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRSV-KLALAGAPLVLAVSALVLTLW------------GS- 303 (394)
T ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhccc-hhHHHHHHHHHHHHHHHHHHH------------hh-
Confidence 5 47777778999999999999999999999999999999954 444333333323222222221 11
Q ss_pred hHHHHHHHHHHHHHhhhccccccccccccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHH
Q 012002 334 FAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHFKFGIFLFFSGWVLI 413 (473)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (473)
..+.......+.+.++. ...+...+.+.+..| +.+++..++.....+++..+++.+.|.+.|..++...+..+++..+
T Consensus 304 ~~~~~~~~~~l~G~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~lg~~~G~~l~G~l~~~~g~~~~~~~~~~~~~ 381 (394)
T PRK10213 304 DKIVATGVAIIWGLTFA-LVPVGWSTWITRSLA-DQAEKAGSIQVAVIQLANTCGAAIGGYALDNIGLTSPLMLSGTLML 381 (394)
T ss_pred hHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHHHHHHHHHH
Confidence 12222222333332322 222333444566666 4466777777888889999999999999998887666665554443
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=271.53 Aligned_cols=367 Identities=11% Similarity=0.018 Sum_probs=237.8
Q ss_pred ccccCCCCCcccCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHh
Q 012002 15 RTQQGDDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVAAQNLAMLIVGRILLG 94 (473)
Q Consensus 15 ~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~l~~i~~~~~~~~~~~~~l~~~r~l~G 94 (473)
.+..|.+.+++|++..+.+++.+.+.+++.+++++.|+++||+|||+++..+.++++++.++++++++++.++++|+++|
T Consensus 56 ~~~~~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G 135 (476)
T PLN00028 56 APLLPIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLVSSATGFIAVRFFIG 135 (476)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 34456788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhhhHHHhhcCCCCCchhhHHHHHHHHHHHHHHHHHHhhhccc------cCCccchHHHHHhhhHHHHHHHHH
Q 012002 95 CGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTSH------IKSQWGWRISLGLAGIPAALLTVG 168 (473)
Q Consensus 95 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~------~~~~~~wr~~f~~~~~~~~~~~~~ 168 (473)
++.+.. +....+++|++|+++|++++++.....++|..+++.+...... ..+..|||+.|++.+++.++..+.
T Consensus 136 ~~~~~~-~~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g~l~l~~~l~ 214 (476)
T PLN00028 136 FSLATF-VSCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPGLLHIIMGIL 214 (476)
T ss_pred HHHHhh-HHHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHH
Confidence 998865 4456789999999999999999987777777776655332211 112358999999999888877666
Q ss_pred hhcccC-ChhhHHhhCChHHHHHHHHHHhCCCCchHHHHHHHHHHhhhhhcccchHHhhcccCchhHHHHHHHHHHhhcc
Q 012002 169 SLLVTD-TPNSLIERGRFEEGKAVLRKIRGTDKIEPEFLELVEASRIAKEVKHPFRNLLKRRNRPQLVIAVALQIFQQCT 247 (473)
Q Consensus 169 ~~~~~e-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (473)
.+++++ .|+. +.++. ++ +.. .++++....+++.+++++ .+...+.++....
T Consensus 215 ~~~~~~~~p~~-----~~~~~----~~---~~~------------~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~ 266 (476)
T PLN00028 215 VLTLGQDLPDG-----NYREL----KK---SGT------------MPKDSFSKVLRYGVTNYR----TWILALTYGYSFG 266 (476)
T ss_pred HHHHcCcCCCC-----chhhH----Hh---cCc------------cccccHHHHHHHHHcCch----hHHHHHHHHHHHH
Confidence 555543 3311 00000 00 000 000000112333444444 3444444444444
Q ss_pred hhHHHHHhHHHHHH-HcCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCcchh----HhHHhHHHHHHHHHHHHHHhhh
Q 012002 248 GINAIMFYAPVLFK-TLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRML----LLEAGIQMFLSQTVIAIILGIK 322 (473)
Q Consensus 248 ~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 322 (473)
....+..+.|.++. ++|++..+++...+...++.++++++.|+++||++||+. .........+..+.......
T Consensus 267 ~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~~~~~-- 344 (476)
T PLN00028 267 VELTMDNIIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGGVFCIWLGR-- 344 (476)
T ss_pred HHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHhcc--
Confidence 44556667777765 479999999999999999999999999999999987521 11111111111111111100
Q ss_pred hccCCcccchhhHHHHHHHHHHHHHhhhccccccccccccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 012002 323 VKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHFKFG 402 (473)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (473)
.. ..........++..+.... .+..+.+..+.. ++.+|++.|+.+..+.+|+.+++.+.+ ..+..++.
T Consensus 345 --------~~-~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~-~~~~g~~~g~~~~~g~lg~~i~~~l~~-~~~~~~y~ 412 (476)
T PLN00028 345 --------AN-SLGAAIVVMILFSIFVQAA-CGATFGIVPFVS-RRSLGVISGLTGAGGNVGAVLTQLLFF-TGSSYSTE 412 (476)
T ss_pred --------cc-hHHHHHHHHHHHHHHHHHh-hhhhcccCcccC-hhhchhhhhhhhccccHHHHHHHHHHH-hcCCccHh
Confidence 11 1111121122222211111 123344555654 468999999998888888888877655 22233455
Q ss_pred HHHHHHHHHHHHHHHHHhhccC
Q 012002 403 IFLFFSGWVLIMSCFVFFLLPE 424 (473)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~ 424 (473)
..+.+.+++.+++.++.++.+.
T Consensus 413 ~~f~~~~~~~~i~~~~~~~~~~ 434 (476)
T PLN00028 413 TGISLMGVMIIACTLPVAFIHF 434 (476)
T ss_pred hHHHHHHHHHHHHHHHHHheec
Confidence 5566656666666666666653
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-34 Score=274.53 Aligned_cols=368 Identities=12% Similarity=0.005 Sum_probs=260.2
Q ss_pred HhhhhccccCCCCCcccCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 012002 10 PVVYRRTQQGDDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVAAQNLAMLIVG 89 (473)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~l~~i~~~~~~~~~~~~~l~~~ 89 (473)
+...-+...|++.+++|.+.++.+|+.+.+.+++.++.+++|+++||+|||++++.+.+++.++++++++++|++.++++
T Consensus 21 d~tiv~~a~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~~~~~~~~a~~~~~li~~ 100 (495)
T PRK14995 21 DATVLHVAAPTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGLASLAAAFSPTASWLIAT 100 (495)
T ss_pred HHHHHHHHHHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 33334455788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhhhhhhhhHHHhhcC-CCCCchhhHHHHHHHHHHHHHHHHHHhhhccccCCccchHHHHHhhhHHHHHHHHH
Q 012002 90 RILLGCGVGFANQAVPLFLSEIA-PTRIRGGLNILFQLNVTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVG 168 (473)
Q Consensus 90 r~l~G~~~~~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~ 168 (473)
|+++|+|.+...+.....+.+++ |+++|++++++......+|..+||.+ .+.+.++.+||+.|++...+.++..++
T Consensus 101 r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~l---gg~l~~~~gwr~~f~i~~~~~~~~~~l 177 (495)
T PRK14995 101 RALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLV---GGILLEHFYWGSVFLINVPIVLVVMGL 177 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhhccCChHHHHHHHHHHHHHHHHH
Confidence 99999999999998888887776 67889999999999999999999999 555666789999999988777766555
Q ss_pred -hhcccCChhhHHhhCChHHHHHHH---------HHHh--CCCCchHHH-HH--------HHHHHhhhhhcccch--HHh
Q 012002 169 -SLLVTDTPNSLIERGRFEEGKAVL---------RKIR--GTDKIEPEF-LE--------LVEASRIAKEVKHPF--RNL 225 (473)
Q Consensus 169 -~~~~~e~p~~~~~~~~~~~~~~~~---------~~~~--~~~~~~~~~-~~--------~~~~~~~~~~~~~~~--~~~ 225 (473)
.+++||+|+.. +++.+...... .... ..+...... .. ...-...+.+.+.+. .++
T Consensus 178 ~~~~l~~~~~~~--~~~~d~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~f~~~e~~~~~p~~~~~l 255 (495)
T PRK14995 178 TARYVPRQAGRR--DQPLNLGHALMLIVAILLLVYSAKTALKGFLSLWVTSLTLLTGALLLGLFIRTQLAASRPMIDMRL 255 (495)
T ss_pred HHHhCCCCCCCC--CCCCChHhHHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCcCHHH
Confidence 45577765321 11111111000 0000 001100000 00 000000011111221 345
Q ss_pred hcccCchhHHHHHHHHHHhhcchhHHHHHhHHHHHHH-cCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHhHH
Q 012002 226 LKRRNRPQLVIAVALQIFQQCTGINAIMFYAPVLFKT-LGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEA 304 (473)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~ 304 (473)
+|++. +....+..++..........+.|.+++. +|+++.+++....+..++..++.++.|++.||+|+|+.+..+
T Consensus 256 f~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~g 331 (495)
T PRK14995 256 FTHRI----ILSGVVMAMTAMITLVGFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSRLGLRLVATGG 331 (495)
T ss_pred hCCcc----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHH
Confidence 66555 3344444444444556667788888776 899999999999999999999999999999999999888777
Q ss_pred hHHHHHHHHHHHHHHhhhhccCCcccchhhHHHHHHHHHHHHHhhhccccccccccccccccccchhhhHHHHHHHHHHH
Q 012002 305 GIQMFLSQTVIAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLF 384 (473)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 384 (473)
..+..++...+.... .....+.......+.+.+.+... +.......+..|++.++.+.++.+....+|
T Consensus 332 ~~~~~~~~~~l~~~~-----------~~~~~~~~~~~~~l~G~g~g~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~lG 399 (495)
T PRK14995 332 MALSALSFYGLAMTD-----------FSTQQWQAWGLMALLGFSAASAL-LASTSAIMAAAPPEKAAAAGAIETMAYELG 399 (495)
T ss_pred HHHHHHHHHHHHHhc-----------CCCchHHHHHHHHHHHHhHHHHH-HHHHHHHHhcCCHHhcchHHHHHHHHHHHH
Confidence 666665554443321 11111112222222222222222 233444567789999999999999999999
Q ss_pred HHHHHHHHHHHhhh
Q 012002 385 TFVIAQAFLSMLCH 398 (473)
Q Consensus 385 ~~~~~~~~~~~~~~ 398 (473)
+.+++.+.+.+.++
T Consensus 400 ~~~G~ai~g~i~~~ 413 (495)
T PRK14995 400 AGLGIAIFGLLLSR 413 (495)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999988765
|
|
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-34 Score=266.12 Aligned_cols=362 Identities=17% Similarity=0.233 Sum_probs=271.3
Q ss_pred CCcccCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhh--hHHHHHHHHHHHhhhhhh
Q 012002 22 SNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVAAQ--NLAMLIVGRILLGCGVGF 99 (473)
Q Consensus 22 ~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~l~~i~~~~~~~~~--~~~~l~~~r~l~G~~~~~ 99 (473)
+.++++|..+.+++.+++++|+.+++++.|++.||+|.|+++..+.++.++++++...+. +++.+++.|++||++.|.
T Consensus 65 ~~~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~g~ 144 (466)
T KOG2532|consen 65 AGEYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQGV 144 (466)
T ss_pred CceecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHHhH
Confidence 668999999999999999999999999999999999999999999999999999998875 456789999999999999
Q ss_pred hhhhhhHHHhhcCCCCCchhhHHHHHHHHHHHHHHHHHHhhhccccCCc-cchHHHHHhhhHHHHHHHHHhh-cccCChh
Q 012002 100 ANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTSHIKSQ-WGWRISLGLAGIPAALLTVGSL-LVTDTPN 177 (473)
Q Consensus 100 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~-~~wr~~f~~~~~~~~~~~~~~~-~~~e~p~ 177 (473)
.+|+...+.++|.|++||++..++..++..+|.+++.++ .+.+.+. +||+.+|++.++.+++..++++ +..|+|.
T Consensus 145 ~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~---sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~d~P~ 221 (466)
T KOG2532|consen 145 LFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPV---SGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYSDSPS 221 (466)
T ss_pred HHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHh---HHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhcCCcc
Confidence 999999999999999999999999999999999999988 5555555 8999999999999999888865 4667774
Q ss_pred hHHhhCChHHHHHHHHHHhCCCCchHHHHHHHHHHhh---hhhcccchHHhhcccCchhHHHHHHHHHHhhcchhHHHHH
Q 012002 178 SLIERGRFEEGKAVLRKIRGTDKIEPEFLELVEASRI---AKEVKHPFRNLLKRRNRPQLVIAVALQIFQQCTGINAIMF 254 (473)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (473)
. .+.-..+| .+..++.+.+ +++.+.|++++++++. +|...+..++...+++.+..
T Consensus 222 ~-h~~is~~E-----------------l~~I~~~k~~~~~~~~~~vP~~~i~ts~~----vwai~~~~f~~~~~~~~l~~ 279 (466)
T KOG2532|consen 222 K-HPNISEKE-----------------LKYIEKGKSEAHVKKKPPVPYKAILTSPP----VWAIWISAFGGNWGFYLLLT 279 (466)
T ss_pred c-CCCCCHHH-----------------HHHHHhcccccccCCCCCCCHHHHHcCHH----HHHHHHHHHHHHHHHHHHHH
Confidence 3 11111111 1111111111 1114679999999888 99999999999999999999
Q ss_pred hHHHHHHH-cCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCcc---------hhHhHHhHHHHHHHHHHHHHHhhhhc
Q 012002 255 YAPVLFKT-LGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRR---------MLLLEAGIQMFLSQTVIAIILGIKVK 324 (473)
Q Consensus 255 ~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (473)
|.|.|+++ +|++..+.|++.+++.+...+..+++|.++||+.+| -.-.++....+++++.+.+.
T Consensus 280 y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i~~~~~ai~l~~l~~~------ 353 (466)
T KOG2532|consen 280 YLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNTIAFGGPAVFLLVLAFT------ 353 (466)
T ss_pred HhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHhHHHHHHHHHHHeeeec------
Confidence 99999987 999999999999999999999999999999998663 11222222333333333322
Q ss_pred cCCcccchhhHHHHHHHHHHHHHhhhccccccccccccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhh---hhh
Q 012002 325 DHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCH---FKF 401 (473)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 401 (473)
+....+..++++.+..+..+... ...........+++.+..+|+.+....+.+.++|.+.+.+..+ ..|
T Consensus 354 ------~~~~~~~a~~~l~~~~~~~g~~~--~Gf~~~~~~~apq~a~~l~g~~~~~~~~~~~~~P~~vg~~~~~~t~~eW 425 (466)
T KOG2532|consen 354 ------SDEHRLLAVILLTIAIGLSGFNI--SGFYKNHQDIAPQHAGFVMGIINFVGALAGFIAPLLVGIIVTDNTREEW 425 (466)
T ss_pred ------CCCcchHHHHHHHHHHHHcccch--hhhHhhhhhccchHHHHHHHHHHHHHHHHHHHHHHheeeEeCCCCHHHH
Confidence 11122222222222222222221 1122212221457789999999999999999999999999842 245
Q ss_pred hHHHHHHHHHHHHHHHHHhhc
Q 012002 402 GIFLFFSGWVLIMSCFVFFLL 422 (473)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~ 422 (473)
...+.+.++..+++.+.+.+.
T Consensus 426 ~~VF~i~a~i~~~~~i~f~~f 446 (466)
T KOG2532|consen 426 RIVFLIAAGILIVGNIIFLFF 446 (466)
T ss_pred HHHHHHHHHHHHHhchheeEe
Confidence 566666555555555555444
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-33 Score=264.17 Aligned_cols=345 Identities=14% Similarity=0.086 Sum_probs=242.7
Q ss_pred CCCCcccCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHh--------hhHHHHHHHHH
Q 012002 20 DDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVAA--------QNLAMLIVGRI 91 (473)
Q Consensus 20 ~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~l~~i~~~~~~~~--------~~~~~l~~~r~ 91 (473)
.+++++|+|+.+.|++.+++.+++.+++++.|+++||+|||++++.+.++++++++.+.++ .+++.+++.|+
T Consensus 41 ~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~ 120 (399)
T PRK05122 41 YVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCALSGLLYLLAGLLAAWPVLSLLLLLLGRL 120 (399)
T ss_pred HHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHHH
Confidence 4678899999999999999999999999999999999999999999999988887776654 25778999999
Q ss_pred HHhhhhhhhhhhhhHHHhhcCCCCCchhhHHHHHHHHHHHHHHHHHHhhhccccCCccchHHHHHhhhHHHHHHHHHhhc
Q 012002 92 LLGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVGSLL 171 (473)
Q Consensus 92 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~ 171 (473)
++|++.+...+...+++.|++|+++|++++++.+.+..+|.++++.++ ..+.+..|||+.+++..+..++..+....
T Consensus 121 l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~---~~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 197 (399)
T PRK05122 121 LLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLG---VLLYHWGGLAGLGLLIMLLALLGLLLARP 197 (399)
T ss_pred HHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHH---HHHHHcccHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999984 44445678999988876665544333322
Q ss_pred ccCChhhHHhhCChHHHHHHHHHHhCCCCchHHHHHHHHHHhhhhhcccchHHhhcccCchhHHHHHHHHHHhhcchhHH
Q 012002 172 VTDTPNSLIERGRFEEGKAVLRKIRGTDKIEPEFLELVEASRIAKEVKHPFRNLLKRRNRPQLVIAVALQIFQQCTGINA 251 (473)
Q Consensus 172 ~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (473)
.|++++. + ++ +.++++.++.. +. ......+....+..
T Consensus 198 ~~~~~~~-----~-~~-------------------------------~~~~~~~~~~~--~~----~~~~~~~~~~~~~~ 234 (399)
T PRK05122 198 RPAVPPV-----K-GE-------------------------------RLPFRRVLGRV--WP----YGMGLALASIGFGT 234 (399)
T ss_pred CCCCCCC-----C-cc-------------------------------chhHHHHHHHH--HH----HHHHHHHHHHHHHH
Confidence 3332110 0 00 00111112111 00 01111112223344
Q ss_pred HHHhHHHHHHHcCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHhHHhHHHHHHHHHHHHHHhhhhccCCcccc
Q 012002 252 IMFYAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKDHSEDLH 331 (473)
Q Consensus 252 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (473)
...+.+.+.++.|.+ +.+.......++.+++.++.+++.||+++|+.+..+.....++..+.... +
T Consensus 235 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~------------~ 300 (399)
T PRK05122 235 IATFITLYYAARGWD--GAALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLA------------P 300 (399)
T ss_pred HHHHHHHHHHHcccc--cchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHh------------c
Confidence 556677766666653 44566677888889999999999999999998887766666655544432 1
Q ss_pred hhhHHHHHHHHHHHHHhhhccccccccccccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHH
Q 012002 332 TGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHFKFGIFLFFSGWV 411 (473)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (473)
+.+.......+.+.+... ..+.......|..|++.|+++.|+.+....++..+++.+.|.+.+..++...+...+++
T Consensus 301 --~~~~~~~~~~l~G~~~~~-~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~ 377 (399)
T PRK05122 301 --SPWMALIGAALTGFGFSL-VFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWFGYPSIFLAAALA 377 (399)
T ss_pred --cHHHHHHHHHHHHHhHHH-HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHH
Confidence 112222222222222222 22333344568889999999999999999999999999999999988877776666666
Q ss_pred HHHHHHHHhhccCCCC
Q 012002 412 LIMSCFVFFLLPETKN 427 (473)
Q Consensus 412 ~~~~~~~~~~~~~~~~ 427 (473)
.+++++...+.+++++
T Consensus 378 ~~~~~~~~~~~~~~~~ 393 (399)
T PRK05122 378 ALLGLALTWLLYRRAP 393 (399)
T ss_pred HHHHHHHHHHhccccc
Confidence 6666666555555443
|
|
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-32 Score=264.94 Aligned_cols=385 Identities=19% Similarity=0.160 Sum_probs=279.2
Q ss_pred CcccCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhhh
Q 012002 23 NYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVAAQNLAMLIVGRILLGCGVGFANQ 102 (473)
Q Consensus 23 ~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~l~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~ 102 (473)
+.++.+.....+..+++++|..+|++++|+++||+|||+++++++++..++.++.++++|++.+++.|+++|++.++...
T Consensus 111 ~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~~~~~~~~ 190 (521)
T KOG0255|consen 111 NLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGFFGSGPLT 190 (521)
T ss_pred ceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhccchhH
Confidence 56677888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHhhcCCCCCchhhHHHHHHHHHHHHHHHHHHhhhccccCCccchHHHHHhhhHHHHHHHHHhhcccCChhhHHhh
Q 012002 103 AVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVGSLLVTDTPNSLIER 182 (473)
Q Consensus 103 ~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~ 182 (473)
....+++|++++++|+.+..+ ......+..++++.+.+. .. +||+.+++..+++++.++++++.||+|||+..+
T Consensus 191 ~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~---~~--~Wr~~~~~~~~~~~~~~~~~~l~~Es~rwl~~~ 264 (521)
T KOG0255|consen 191 VGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYI---TR--DWRWLFWIISIPSGLFLLLWFLPPESPRWLLSK 264 (521)
T ss_pred HhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHH---Hh--hHHHHHHHHHHHHHHHHHHHHccCcChHHHHHc
Confidence 999999999999999999999 555555555555553222 22 799999999999998888777777999999999
Q ss_pred CChHHHHHHHHHHhCCCC---chHHHHHHH--HHHhh--hhhcccchHHhhcccCchhHHHHHHHHHHhhcchhHHHHHh
Q 012002 183 GRFEEGKAVLRKIRGTDK---IEPEFLELV--EASRI--AKEVKHPFRNLLKRRNRPQLVIAVALQIFQQCTGINAIMFY 255 (473)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~--~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (473)
++.+++.+.+++....|. ...+..+.. ...++ ..+++..+.++++.+..++..+...+.++.....+++....
T Consensus 265 g~~~~a~~~l~~~a~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~y~gl~~~ 344 (521)
T KOG0255|consen 265 GRIDEAIKILKKIAKLNGRKLSVKELLRLELLLRPLKLLFTEPKISFLDLFRTPRLRYRTLYLLFIWFVFSLVYYGLSLN 344 (521)
T ss_pred CchHHHHHHHHHHHhhcCCCCCcHHHHHHHHHhhHhhhhccCCCCchhhhhcCHHHHHHHHHHHHHHHHHhHHHHhhhhh
Confidence 999999999998865441 111111111 11111 11123457778877754444555555443333333222222
Q ss_pred HHHHHHHcCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHhHHhHHHHHHHHHHHHHHhhhhccCCcccchhhH
Q 012002 256 APVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKDHSEDLHTGFA 335 (473)
Q Consensus 256 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (473)
....|.+ ........+.....+....+...|+.|||.....+.....++++...+... ....
T Consensus 345 ----~~~lg~~---~~~~~~~~~~~~~p~~~~~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~ 406 (521)
T KOG0255|consen 345 ----VSGLGGN---IYLNFTLSGLVELPAYFRNGLLLPEFGRRPPLFLSLFLAGIGLLLFGWLPD-----------DLGG 406 (521)
T ss_pred ----hhhcCch---HHHHHHHHHHHHhhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhc-----------cchh
Confidence 2223322 334455555677888888899999999999999999988888888887642 1110
Q ss_pred HHHHHHHHHHHHhhhccccccccccccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHH-HHHHHHHH
Q 012002 336 VLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHFKFGIFLF-FSGWVLIM 414 (473)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 414 (473)
+...+...+...+...++. ..+.+..|++|+..|..+.+.......++++++|.+.-.... ......+. +.....+.
T Consensus 407 ~~~~~~~~~~~~~~~~~~~-~~~~~~~el~pt~~r~~~~~~~~~~~~~~~i~ap~~~~~~~~-~~~~~~~~~~~~~~~l~ 484 (521)
T KOG0255|consen 407 WLHWILPLLGKFFIGSAFN-LIFLYSAELIPTVVRNTAVGAISAAARLGSILAPLFPLLLRQ-MFPLLGLILFGWLALLL 484 (521)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hcccchHHHHHHHHHHH
Confidence 1222222222222233333 337788999999999999999999999999999988754444 22222222 45566666
Q ss_pred HHHHHhhccCCCCCChHHH
Q 012002 415 SCFVFFLLPETKNVPIEEM 433 (473)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~ 433 (473)
+.+..+++||++++.+.+.
T Consensus 485 ~~~~~~~lpet~~~~l~~t 503 (521)
T KOG0255|consen 485 GLLSLLLLPETKGKPLPGT 503 (521)
T ss_pred HHHHHhcCcccCCCCCchh
Confidence 7677789999999887665
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-33 Score=263.11 Aligned_cols=361 Identities=18% Similarity=0.201 Sum_probs=256.3
Q ss_pred hccccCCCCCcccCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 012002 14 RRTQQGDDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVAAQNLAMLIVGRILL 93 (473)
Q Consensus 14 ~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~l~~i~~~~~~~~~~~~~l~~~r~l~ 93 (473)
.....|.+.+++|++..+.+++.+.+.++..++.++.|+++||+|||+++..+.++.+++.+++.++++++.+++.|++.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (398)
T TIGR00895 36 MGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLFSVFTLLCALATNVTQLLILRFLA 115 (398)
T ss_pred HHhhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHH
Confidence 34556778889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhhhhHHHhhcCCCCCchhhHHHHHHHHHHHHHHHHHHhhhccccCCccchHHHHHhhhHHHHHHHHH-hhcc
Q 012002 94 GCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVG-SLLV 172 (473)
Q Consensus 94 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~-~~~~ 172 (473)
|++.+...+...+++.|++|+++|++++++...+..+|..+++.+ .+.+.+..+||+.|++.++..++..++ ..++
T Consensus 116 g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~---~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 192 (398)
T TIGR00895 116 GLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFL---AGWLIPVFGWRSLFYVGGIAPLLLLLLLMRFL 192 (398)
T ss_pred hcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHH---HHHHhhcccceeehhhhhhHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999 455556679999999987555554444 5668
Q ss_pred cCChhhHHhhCChHHHHHHHHHHhCCCCchHHHHHHHHHHhhhhhcccchHHhhcccCchhHHHHHHHHHHhhcchhHHH
Q 012002 173 TDTPNSLIERGRFEEGKAVLRKIRGTDKIEPEFLELVEASRIAKEVKHPFRNLLKRRNRPQLVIAVALQIFQQCTGINAI 252 (473)
Q Consensus 173 ~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (473)
||++++..++ +.++..+..++.......+.+. +..++.++.+..+...+.+++.+..+. .+...+..++........
T Consensus 193 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 269 (398)
T TIGR00895 193 PESIDFLVSK-RPETVRRIVNAIAPQMQAEAQS-ALPEQKATQGTKRSVFKALFQGKTARI-TVLLWLLYFMLLVGVYFL 269 (398)
T ss_pred CCCChHHHhc-CHHHHHHHHHHHHHhccccccc-cccccccccchhhHHHHHHhcchhHHH-HHHHHHHHHHHHHHHHHH
Confidence 8887665444 3333333332222111110000 000000000011111222333332222 333344444555566677
Q ss_pred HHhHHHHHHHcCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHhHHhHHHHHHHHHHHHHHhhhhccCCcccch
Q 012002 253 MFYAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKDHSEDLHT 332 (473)
Q Consensus 253 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (473)
..+.|++.++.|++..+.+.......++.+++.++.+++.||++||+... ......+...++.... .
T Consensus 270 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~-----------~- 336 (398)
T TIGR00895 270 TNWLPKLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPRVTAL-LLLLGAVFAVLVGSTL-----------F- 336 (398)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHH-HHHHHHHHHHHHHHHh-----------h-
Confidence 77888887889999999999999999999999999999999999884433 3333333322222211 1
Q ss_pred hhHHHHHHHHHHHHHhhhccccccccccccccccccchhhhHHHHHHHHHHHHHHHHHHHHHH
Q 012002 333 GFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSM 395 (473)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (473)
..+......++...+ .....+...++..|.+|++.|+++.|+.+....++..++|.+.|.+
T Consensus 337 -~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G~l 397 (398)
T TIGR00895 337 -SPTLLLLLGAIAGFF-VNGGQSGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPILAGYL 397 (398)
T ss_pred -CHHHHHHHHHHHHHH-HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHhc
Confidence 111122222222222 2223345667788999999999999999999999999999998865
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=270.93 Aligned_cols=372 Identities=14% Similarity=0.072 Sum_probs=248.1
Q ss_pred cccCCCCCcccCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHH-HHHHHh
Q 012002 16 TQQGDDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVAAQNLAMLIV-GRILLG 94 (473)
Q Consensus 16 ~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~l~~i~~~~~~~~~~~~~l~~-~r~l~G 94 (473)
...|++.+++|++.++.+++.+.+.++..++.+++|+++||+|||++++.+.++.++++++++++++++.+++ .|+++|
T Consensus 40 ~~~~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~G 119 (455)
T TIGR00892 40 VFFKELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGGLLASLGMILASFSSNVIELYLTAGFITG 119 (455)
T ss_pred hhHHHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3456778899999999999999999999999999999999999999999999999999999999999998875 579999
Q ss_pred hhhhhhhhhhhHHHhhcCCCCCchhhHHHHHHHHHHHHHHHHHHhhhccccCCccchHHHHHhhhHHHHHHHHHhhcccC
Q 012002 95 CGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVGSLLVTD 174 (473)
Q Consensus 95 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e 174 (473)
++.+...+....++.++++ ++|+++.++.+.+..+|..++|++ .+.+.+.+|||+.|++.+++.++..+..+++.+
T Consensus 120 ~~~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l---~~~l~~~~gwr~~f~~~~~~~~~~~v~~~~~~~ 195 (455)
T TIGR00892 120 LGLAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPL---NQYLFESFGWRGSFLILGGLLLHCCVCGALMRP 195 (455)
T ss_pred hcchhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHH---HHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCC
Confidence 9999877888888999996 789999999999999999999998 455555679999999999887766555444332
Q ss_pred ChhhHHhhCChHHHHHHHHHHhCCCCchHHHHHHHHHHhhhhhcccchHHhhcccCchhHHHHHHHHHHhhcchhHHHHH
Q 012002 175 TPNSLIERGRFEEGKAVLRKIRGTDKIEPEFLELVEASRIAKEVKHPFRNLLKRRNRPQLVIAVALQIFQQCTGINAIMF 254 (473)
Q Consensus 175 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (473)
.++.. .+.+ ++.. +.....+..++. +. ....++..+..+ .+.++++. ++......+.....+.....
T Consensus 196 ~~~~~-~~~~-~~~~---~~~~~~~~~~~~--~~-~~~~~~~~~~~~-~~~~~~~~----~~~~~~~~~l~~~~~~~~~~ 262 (455)
T TIGR00892 196 VGPSQ-RVSK-SKSK---EGLPPDGSTKKL--SK-KSTAEKINRFLD-FSLFTHRG----FLVYLSGNVIMFLGFFAPII 262 (455)
T ss_pred CCccc-cccc-cccc---ccCCCCCccccc--cc-cchhhhhhhhcc-hHHhcCch----HHHHHHHHHHHHHHccchHH
Confidence 22110 0000 0000 000000000000 00 000000000001 13444444 44444444444445555667
Q ss_pred hHHHHHHHcCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhc--CcchhHhHHhHHHHHHHHHHHHHHhhhhccCCcccch
Q 012002 255 YAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKV--GRRMLLLEAGIQMFLSQTVIAIILGIKVKDHSEDLHT 332 (473)
Q Consensus 255 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (473)
+.|.+.++.|++..+++...++.+++.++++++.+++.||. ++|+...........+...+.... ..
T Consensus 263 ~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~-----------~~ 331 (455)
T TIGR00892 263 FLVPYAKDKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCAL-----------AG 331 (455)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHH-----------hc
Confidence 77878888899999999999999999999999999999973 334333332222211111111111 11
Q ss_pred hhHHHHHHHHHHHHHhhhccccccccccccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhh-hhHHHHHHHHH
Q 012002 333 GFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHFK-FGIFLFFSGWV 411 (473)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 411 (473)
..+.......+.+.. .....+....+..|.+|++.++++.|+.+....++..++|.+.|.+.+..+ +...+...++.
T Consensus 332 -~~~~~~i~~~~~G~~-~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~ 409 (455)
T TIGR00892 332 -DYTGLVIYCIFFGLS-FGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSI 409 (455)
T ss_pred -hHHHHHHHHHHHHHH-hchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcCCcchHHHHhhHH
Confidence 122222222222222 223334556677789999999999999999999999999999999988764 55555544444
Q ss_pred HHHHHH
Q 012002 412 LIMSCF 417 (473)
Q Consensus 412 ~~~~~~ 417 (473)
.+++.+
T Consensus 410 ~li~~~ 415 (455)
T TIGR00892 410 VVSAGL 415 (455)
T ss_pred HHHHHH
Confidence 444433
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-32 Score=253.07 Aligned_cols=357 Identities=14% Similarity=0.052 Sum_probs=250.1
Q ss_pred hhccccCCCCC-cccCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHh-----hhHHHH
Q 012002 13 YRRTQQGDDSN-YCKYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVAA-----QNLAML 86 (473)
Q Consensus 13 ~~~~~~~~~~~-~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~l~~i~~~~~~~~-----~~~~~l 86 (473)
..++..+.+.+ ++|+|.+|.+++.+++.+++.++.++.|++.||+|.|+++.++.+++++.+++.+++ ++++.+
T Consensus 52 ~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i~~~~~~~a~~~~~~s~~~l 131 (462)
T PRK15034 52 LFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILIIPCVWLGIAVQNPNTPFGIF 131 (462)
T ss_pred HHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHcccCCCHHHH
Confidence 33445566654 899999999999999999999999999999999999999999999999999999987 899999
Q ss_pred HHHHHHHhhhhhhhhhhhhHHHhhcCCCCCchhhHHHHHHHHHHHHHHHHHHhhhcc---------c------cCCccch
Q 012002 87 IVGRILLGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTS---------H------IKSQWGW 151 (473)
Q Consensus 87 ~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~---------~------~~~~~~w 151 (473)
++.|++.|++ +..++.....+++|+|+++||+++++.....++|..+++++..... . ..+..+|
T Consensus 132 li~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~g~~~~~ 210 (462)
T PRK15034 132 IVIALLCGFA-GANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQADGSVMSL 210 (462)
T ss_pred HHHHHHHHHH-HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccccccccccchHHH
Confidence 9999999998 7789999999999999999999999997666666655544432111 0 0124569
Q ss_pred HHHHHhhhHHHHHHHHHhhcc-cCChhhHHhhCChHHHHHHHHHHhCCCCchHHHHHHHHHHhhhhhcccchHHhhcccC
Q 012002 152 RISLGLAGIPAALLTVGSLLV-TDTPNSLIERGRFEEGKAVLRKIRGTDKIEPEFLELVEASRIAKEVKHPFRNLLKRRN 230 (473)
Q Consensus 152 r~~f~~~~~~~~~~~~~~~~~-~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (473)
|..+++..++.++..++.++. ++.|+ ++.......+.+|++.
T Consensus 211 ~~~~~~~~~~~iv~~i~~~~~~~~~~~-------------------------------------~~~~~~~~~~vlk~~~ 253 (462)
T PRK15034 211 ANAAWIWVPLLAIATIAAWSGMNDIAS-------------------------------------SRASIADQLPVLQRLH 253 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCccc-------------------------------------cccCHHHHHHHhCCCc
Confidence 999988888887777665443 33221 0111123445666766
Q ss_pred chhHHHHHHHHHHhhcchhHHHHHhHHHHHHHcCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHhHHhHHHHH
Q 012002 231 RPQLVIAVALQIFQQCTGINAIMFYAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFL 310 (473)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~ 310 (473)
.|.+++.+++.+..+..+..+.|++.++ .++.........+..+...+.++++|+++||+|+++++.++.+.+.+
T Consensus 254 ----~Wllslly~~tFG~fvg~s~~lp~~~~~-~~~~~~~l~~~~l~~l~~~l~rplgG~LADRiG~~~vl~~~~i~~~i 328 (462)
T PRK15034 254 ----LWLLSLLYLATFGSFIGFSAGFAMLAKT-QFPDVNILRLAFFGPFIGAIARSVGGAISDKFGGVRVTLINFIFMAI 328 (462)
T ss_pred ----hhHHHHHHHHHHHHHHHHHHHHHHHHHH-HcChHHHHHHHHHHHHHHHHHHHhhHHHHHhcCchHHHHHHHHHHHH
Confidence 7777888888888888899899988866 33333333334445677888899999999999999999988877766
Q ss_pred HHHHHHHHHhhhhccCCcccchhhHHHHHHHHHHHHHhhhccccccccccccccccc---------------------cc
Q 012002 311 SQTVIAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPL---------------------ET 369 (473)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~---------------------~~ 369 (473)
+......... .. .....+...........+.+.+.. ..+-++.+.+|+ ++
T Consensus 329 ~~~~~~l~lp----~~----~~~~~~~~~~~~~~l~~~~G~gng-svfk~ip~~f~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (462)
T PRK15034 329 FSALLFLTLP----GT----GSGNFIAFYAVFMGLFLTAGLGSG-STFQMIAVIFRQITIYRVKMKGGSDEQAQREAVTE 399 (462)
T ss_pred HHHHHHHHhc----cc----cccHHHHHHHHHHHHHHHhcccch-HHHHhhHHHHhhhhhhcccccccchhHHhhHHHHH
Confidence 6644433321 00 011122222222222223333332 334445666664 15
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhhhhh-hhHHHH-HHHHHHHHHHHHHhh
Q 012002 370 RSAGQSVTVCVNLLFTFVIAQAFLSMLCHFK-FGIFLF-FSGWVLIMSCFVFFL 421 (473)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~ 421 (473)
.|.+.|+....+.+|+++.|.++|...+..+ +...+. +.+...++..+.+..
T Consensus 400 ~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~w~~ 453 (462)
T PRK15034 400 TAAALGFISAIGAVGGFFIPQAFGMSLNMTGSPVGAMKVFLIFYIVCVLLTWLV 453 (462)
T ss_pred HHHHHHHHHHHHHcccchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 6788999999999999999999999987765 333333 333333444444433
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-32 Score=258.84 Aligned_cols=339 Identities=14% Similarity=0.103 Sum_probs=247.0
Q ss_pred hhccccCCCCCcccCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 012002 13 YRRTQQGDDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVAAQNLAMLIVGRIL 92 (473)
Q Consensus 13 ~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~l~~i~~~~~~~~~~~~~l~~~r~l 92 (473)
...+..|.+.+++|.++.+.+++.+.+.++..+++++.|+++||+|||+++..+.++.+++.++++++++++.+++.|++
T Consensus 23 ~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 102 (385)
T TIGR00710 23 MYLPAFPEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALSNNIETLLVLRFV 102 (385)
T ss_pred HhcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHH
Confidence 33445577888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhhhhhhhhHHHhhcCCCCCchhhHHHHHHHHHHHHHHHHHHhhhccccCCccchHHHHHhhhHHHHHHHHHh-hc
Q 012002 93 LGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVGS-LL 171 (473)
Q Consensus 93 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~-~~ 171 (473)
.|++.+...+...+++.|++|+++|++++++.+....+|..+++.++ +.+.++.+||+.|++.++..++..+.. ++
T Consensus 103 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (385)
T TIGR00710 103 QAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLG---GYILVWLSWHAIFAFLSLAGILLSALIFFI 179 (385)
T ss_pred HHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHcCHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999994 445556789999999888777666554 44
Q ss_pred ccCChhhHHhhCChHHHHHHHHHHhCCCCchHHHHHHHHHHhhhhhcccchHHhhcccCchhHHHHHHHHHHhhcchhHH
Q 012002 172 VTDTPNSLIERGRFEEGKAVLRKIRGTDKIEPEFLELVEASRIAKEVKHPFRNLLKRRNRPQLVIAVALQIFQQCTGINA 251 (473)
Q Consensus 172 ~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (473)
.||+++.. ++ ++ .++..+.+++.++++. ++...+...........
T Consensus 180 ~~~~~~~~---~~-~~---------------------------~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 224 (385)
T TIGR00710 180 LPETLPYE---AR-IQ---------------------------ISTYFETFLLLLKSKM----FWGYALIYGASFGGFFA 224 (385)
T ss_pred CCCCCCCc---cc-CC---------------------------HHHHHHHHHHHHcCch----hHHHHHHHHHHHHHHHH
Confidence 66654210 00 00 0000112344555554 33333333333344455
Q ss_pred HHHhHHHHHH-HcCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHhHHhHHHHHHHHHHHHHHhhhhccCCccc
Q 012002 252 IMFYAPVLFK-TLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKDHSEDL 330 (473)
Q Consensus 252 ~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (473)
...+.|.+++ ++|+++.+.+.......++.+++.++.+++.||+++|+.+..+.....++..++.....
T Consensus 225 ~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 294 (385)
T TIGR00710 225 FFSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAKSLLRMGLILFAVSAVLLEITAI---------- 294 (385)
T ss_pred HHHcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHH----------
Confidence 6666777765 58999999999999999999999999999999999999888776666665555443321
Q ss_pred chhhHHHHHHHHHHHHHhhhccccccccccccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 012002 331 HTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHFK 400 (473)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (473)
.....+..........+.......+.......|..| +.++++.++.+.....++.+.+++.+.+.+..+
T Consensus 295 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~i~~~~~~~~~~~~~ 363 (385)
T TIGR00710 295 LGLGSWAMIIGPMMFVGIGNSMISSIAMAYALEDFP-HVAGTASALFGTLRLVLGAIVGYLVSLIHGNTA 363 (385)
T ss_pred hccchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-ccchHHHHHHHHHHHHHHHHHHHHHHhccccCh
Confidence 110111111211222212122222344455567766 578999999999988877777777774444333
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=260.16 Aligned_cols=356 Identities=10% Similarity=0.066 Sum_probs=254.7
Q ss_pred hhccccCCCCCcccCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 012002 13 YRRTQQGDDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVAAQNLAMLIVGRIL 92 (473)
Q Consensus 13 ~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~l~~i~~~~~~~~~~~~~l~~~r~l 92 (473)
..+...|++++++|+|.++.+++.+.+.+++.++++++|++.||+|||+++..+.++.+++.++++++++++.++++|++
T Consensus 25 ~~g~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l 104 (394)
T PRK03699 25 VTGMVMGPIAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALMILAVAGLMFSHSLALFSIAMFV 104 (394)
T ss_pred HHhhhhHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHH
Confidence 34556678899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhhhhhhhhHHHhhcCCCCCchhhHHHHHHHHHHHHHHHHHHhhhccccCCccchHHHHHhhhHHHHHHHHHhhcc
Q 012002 93 LGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVGSLLV 172 (473)
Q Consensus 93 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~ 172 (473)
+|++.+...+....++.|++|+++|+++++..+...++|..++|.+.... +.+..+||+.|.+.+++.++..++.++
T Consensus 105 ~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l--~~~~~gw~~~f~~~~~~~~~~~~~~~~- 181 (394)
T PRK03699 105 LGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYL--LARSIEWYWVYACIGLVYVAIFILTLF- 181 (394)
T ss_pred HHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHH--HhccccHHHHHHHHHHHHHHHHHHHHh-
Confidence 99999999999999999999999999999999888999999988873322 123468999999988877666554332
Q ss_pred cCChhhHHhhCChHHHHHHHHHHhCCCCchHHHHHHHHHHhhhhhcccchHHhhcccCchhHHHHHHHHHHhhcchhHHH
Q 012002 173 TDTPNSLIERGRFEEGKAVLRKIRGTDKIEPEFLELVEASRIAKEVKHPFRNLLKRRNRPQLVIAVALQIFQQCTGINAI 252 (473)
Q Consensus 173 ~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (473)
.+.|+. ++++. + + ++ .. .+... ++.++...+..++.....+.+
T Consensus 182 ~~~p~~--~~~~~-~-------------------------~-~~---~~----~~~~~-~~~~~~~~~~~~~~~~~~~~~ 224 (394)
T PRK03699 182 SEFPAL--GKHAP-K-------------------------A-DK---PV----AKEKW-GIGVLFLAIAALLYILAQLTF 224 (394)
T ss_pred cCCccc--cccCc-c-------------------------c-cC---cc----ccccC-ChHHHHHHHHHHHHHHHHHHH
Confidence 222210 00000 0 0 00 00 01111 122444445555555566677
Q ss_pred HHhHHHHHH-HcCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHhHHhHHHHHHHHHHHHHHhhhhccCCcccc
Q 012002 253 MFYAPVLFK-TLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKDHSEDLH 331 (473)
Q Consensus 253 ~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (473)
..|.|.+++ ++|+++.+++...+...++..+++++.++++||+++|+.+........+...++.. .
T Consensus 225 ~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~-------------~ 291 (394)
T PRK03699 225 ISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYLFVN-------------T 291 (394)
T ss_pred HHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHH-------------c
Confidence 889998885 48999999999999999999999999999999999999887665554443333221 1
Q ss_pred hhhHHHHHHHHHHHHHhhhccccccccccccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHH
Q 012002 332 TGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHFKFGIFLFFSGWV 411 (473)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (473)
....+. ....+..+ .......+....+..|..|. .++...+.......+|..++|.+.|.+.+..++...+....++
T Consensus 292 ~~~~~~-~~~~~~~G-~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~g~~~~~~~~~~~ 368 (394)
T PRK03699 292 DDPSHL-LYAILGLG-FFSSAIYTTIITLGSQQTKV-ASPKLVNFILTCGTIGTMLTFVVTSPIVAHFGLQAALLTANGL 368 (394)
T ss_pred CCchHH-HHHHHHHH-HHHHHHHHHHHHHHHHHccC-CCHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCchhhhhhhHHH
Confidence 111111 11122222 22222223334445565553 4567788888899999999999999999988876665555555
Q ss_pred HHHHHHHHhhccC
Q 012002 412 LIMSCFVFFLLPE 424 (473)
Q Consensus 412 ~~~~~~~~~~~~~ 424 (473)
.+++.+.....++
T Consensus 369 ~~~~~~~~~~~~~ 381 (394)
T PRK03699 369 YAVVFVMCILLGF 381 (394)
T ss_pred HHHHHHHHHHHHH
Confidence 5555444444443
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=258.50 Aligned_cols=332 Identities=13% Similarity=0.006 Sum_probs=246.7
Q ss_pred CCCCcccCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhh-----hHHHHHHHHHHHh
Q 012002 20 DDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVAAQ-----NLAMLIVGRILLG 94 (473)
Q Consensus 20 ~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~l~~i~~~~~~~~~-----~~~~l~~~r~l~G 94 (473)
....+++.+..+.+++.+++.++..++++++|+++||+|||++++.+.++.+++.++.++.+ +++.+++.|+++|
T Consensus 24 ~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g 103 (365)
T TIGR00900 24 LYVLAGTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVALLGGLNIWQVYVLAGILA 103 (365)
T ss_pred HHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Confidence 34455688999999999999999999999999999999999999999999999999988888 9999999999999
Q ss_pred hhhhhhhhhhhHHHhhcCCCCCchhhHHHHHHHHHHHHHHHHHHhhhccccCCccchHHHHHhhhHHHHHHHHHhhcc--
Q 012002 95 CGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVGSLLV-- 172 (473)
Q Consensus 95 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~-- 172 (473)
++.+...+...+++.|++|+++|++++++.+.+..+|.+++|.++ +.+.+..+||+.|++.++..++..+..+.+
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~---~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 180 (365)
T TIGR00900 104 IAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIG---GLMYATLGIKWAIWVDAVGFAISALLIVSVRI 180 (365)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHH---HHHHHHhhHHHHHHHHHHHHHHHHHHHHhccc
Confidence 999999999999999999999999999999999999999999994 444556789999999887766655544333
Q ss_pred cCChhhHHhhCChHHHHHHHHHHhCCCCchHHHHHHHHHHhhhhhcccchHHhhcccCchhHHHHHHHHHHhhcchhHHH
Q 012002 173 TDTPNSLIERGRFEEGKAVLRKIRGTDKIEPEFLELVEASRIAKEVKHPFRNLLKRRNRPQLVIAVALQIFQQCTGINAI 252 (473)
Q Consensus 173 ~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (473)
||+++. ++.+. ++ + ..++..+.++..+|++. ++......+.........
T Consensus 181 ~~~~~~----~~~~~--------------~~---~------~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 229 (365)
T TIGR00900 181 PELAAS----EIQAL--------------SN---A------VLRDTREGIKFVLKNPL----LRTLLLLALLFNLVFAPA 229 (365)
T ss_pred ccCCCc----ccccc--------------ch---h------HHHHHHhHHHHHHcCcH----HHHHHHHHHHHHHHHHHH
Confidence 222110 00000 00 0 00011123445555554 333333333333333334
Q ss_pred H-HhHHHHHHH-cCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHhHHhHHHHHHHHHHHHHHhhhhccCCccc
Q 012002 253 M-FYAPVLFKT-LGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKDHSEDL 330 (473)
Q Consensus 253 ~-~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (473)
. .+.|.+.++ +|.+..+.+.......++.+++.++.+++.||.+||+.+..+....+++.......
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 297 (365)
T TIGR00900 230 IVALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLT------------ 297 (365)
T ss_pred HHHHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhh------------
Confidence 3 677888876 89999999999999999999999999999999999998887665555555444432
Q ss_pred chhhHHHHHHHHHHHHHhhhccccccccccccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 012002 331 HTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHF 399 (473)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (473)
+. +.+......++.. .......+....+..|..|++.|+++.|+.+....++..+++.+.|.+.|..
T Consensus 298 ~~-~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~~~ 364 (365)
T TIGR00900 298 PP-NFPLFLVLWFAIG-VGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLADHL 364 (365)
T ss_pred ch-hHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 11 1222222222222 2222334556677789999999999999999999999999999999998864
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-34 Score=267.67 Aligned_cols=367 Identities=14% Similarity=0.076 Sum_probs=253.5
Q ss_pred hHhHhhhhccccCCCCCcccCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 012002 7 KFFPVVYRRTQQGDDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVAAQNLAML 86 (473)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~l~~i~~~~~~~~~~~~~l 86 (473)
.|+.........|.+.+++|++..+.|++.+++.++..+++++.|+++||+|||++++.+.++.+++.++++++++++.+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (379)
T TIGR00881 7 YYLVRKNFALAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFSTSLWVM 86 (379)
T ss_pred HHHhHHhhhhhhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHhhhHHHH
Confidence 34444444556678889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhhhhhhhhhHHHhhcCCCCCchhhHHHHHHHHHHHHHHHHH-HhhhccccCCccchHHHHHhhhHHHHHH
Q 012002 87 IVGRILLGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANL-VNYGTSHIKSQWGWRISLGLAGIPAALL 165 (473)
Q Consensus 87 ~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~-~~~~~~~~~~~~~wr~~f~~~~~~~~~~ 165 (473)
++.|++.|++.+...+...+++.|++|+++|++++++.+.+..+|..+++. ++. .+.+..+||+.|++.+++.++.
T Consensus 87 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 163 (379)
T TIGR00881 87 AALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLF---GIAELYSWHWVFIVPGIIAIIV 163 (379)
T ss_pred HHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHH---HHHhcCCchhHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999994 532 2334578999999988877665
Q ss_pred HHH-hhcccCChhhHHhhCChHHHHHHHHHHhCCCCchHHHHHHHHHHhhhhhcccchHHhhcccCchhHHHHHHHHHHh
Q 012002 166 TVG-SLLVTDTPNSLIERGRFEEGKAVLRKIRGTDKIEPEFLELVEASRIAKEVKHPFRNLLKRRNRPQLVIAVALQIFQ 244 (473)
Q Consensus 166 ~~~-~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (473)
.++ .++.+|+|+....+++.++. .++.+.+ + ++.+++.+..+...+++++++. ++...+..+.
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~ 227 (379)
T TIGR00881 164 SLICFLLLRDSPQSCGLPPAEEMP---------NEEPDGD--A-EKKEEELTKKQIFLQYVLLNKV----LWYISLGYVF 227 (379)
T ss_pred HHHHheeeCCCccccccCccccCc---------ccccccc--c-ccccccccchHHHHHHHHhcch----HHHHHHHHHH
Confidence 554 45567765421111100000 0000000 0 0000000111122344455544 4444455555
Q ss_pred hcchhHHHHHhHHHHHHH-cCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHhHHhHHHHHHHHHHHHHHhhhh
Q 012002 245 QCTGINAIMFYAPVLFKT-LGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKV 323 (473)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (473)
.......+..+.|.++++ .|++..+.+.......++.+++.++.+++.||..+++...............+.....
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~--- 304 (379)
T TIGR00881 228 VYVVRTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIVSLLVYWL--- 304 (379)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHhc---
Confidence 555556677788877754 7999999999999999999999999999999864333222221111111111111110
Q ss_pred ccCCcccchhhHHHHHHHHHHHHHhhhccccccccccccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 012002 324 KDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHFKFG 402 (473)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (473)
. .....+...... +..+....+..+....+..|.+|++.|+++.|+.+....+++.++|.+.|.+.++.++.
T Consensus 305 -~-----~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~ 376 (379)
T TIGR00881 305 -N-----PAANPLMDLICL-FALGFLVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLADGFGWA 376 (379)
T ss_pred -C-----cchhHHHHHHHH-HHHHHHHhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHHHhhccc
Confidence 0 111111211222 22222222333344556789999999999999999999999999999999999987754
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-32 Score=258.36 Aligned_cols=351 Identities=15% Similarity=0.080 Sum_probs=249.8
Q ss_pred ccCCCCCcccCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhh
Q 012002 17 QQGDDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVAAQNLAMLIVGRILLGCG 96 (473)
Q Consensus 17 ~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~l~~i~~~~~~~~~~~~~l~~~r~l~G~~ 96 (473)
..|.+.+++|+|..+.++..+.+.+++.+++++.|+++||+|||+++..+..+.+++.+++.++++++.+++.|+++|++
T Consensus 35 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~ 114 (406)
T PRK15402 35 GMLAVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFILTCLAILLAQSIEQFTLLRFLQGIG 114 (406)
T ss_pred chHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhH
Confidence 44567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhHHHhhcCCCCCchhhHHHHHHHHHHHHHHHHHHhhhccccCCccchHHHHHhhhHHHHHHHHHh-hcccCC
Q 012002 97 VGFANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVGS-LLVTDT 175 (473)
Q Consensus 97 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~-~~~~e~ 175 (473)
.+...+...+++.|++|+++|.+.+++......+|..++|.++ ..+.++.+||+.|++.++..++..+.. +..||+
T Consensus 115 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~---~~l~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (406)
T PRK15402 115 LCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVG---AALIHVLPWRGMFVLFAALAALSFFGLWRAMPET 191 (406)
T ss_pred hhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHccCccHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 9988899999999999999999999999888889999999984 444456789999999888877766543 446665
Q ss_pred hhhHHhhCChHHHHHHHHHHhCCCCchHHHHHHHHHHhhhhhcccchHHhhcccCchhHHHHHHHHHHhhcchhHHHHHh
Q 012002 176 PNSLIERGRFEEGKAVLRKIRGTDKIEPEFLELVEASRIAKEVKHPFRNLLKRRNRPQLVIAVALQIFQQCTGINAIMFY 255 (473)
Q Consensus 176 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (473)
++.. ++. .+. ++...+++.+++++. ++...+..++..........+
T Consensus 192 ~~~~---~~~-----------------~~~----------~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 237 (406)
T PRK15402 192 AGRV---GEK-----------------LSL----------KELGRDYKLVLKNRR----FVAGALALGLVSLPLLAWIAL 237 (406)
T ss_pred Cccc---ccc-----------------ccH----------HHHHHHHHHHHcCcH----HHHHHHHHHHHHHHHHHHHHH
Confidence 4210 000 000 001122344555554 333333333333333445556
Q ss_pred HHHHHH-HcCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHhHHhHHHHHHHHHHHHHHhhhhccCCcccchhh
Q 012002 256 APVLFK-TLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKDHSEDLHTGF 334 (473)
Q Consensus 256 ~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (473)
.|.++. .+|+++.+.+.......++.+++.++.+++.||+++|+.+..+.....++..++...... ....
T Consensus 238 ~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~---------~~~~ 308 (406)
T PRK15402 238 SPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRRPLRSLIRMGLWPMVAGLLLAALATVI---------SSHA 308 (406)
T ss_pred hHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHc---------cccc
Confidence 676664 489998888888777788899999999999999999998888777666665555443210 1111
Q ss_pred HHHHHHHHHHHHHhhhccccccccccccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHH
Q 012002 335 AVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHFKFGIFLFFSGWVLIM 414 (473)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (473)
.+.......+...+..... +...... ...+++.+|+..++.+....++..+++.+.+.+.+..+........+++.+.
T Consensus 309 ~~~~~~~~~~~g~g~~~~~-~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~ 386 (406)
T PRK15402 309 YLWLTAGLSLYAFGIGLAN-AGLYRLT-LFSSDVSKGTVSAAMGMLSMLIFTVGIELSKHAYLGGGNGLFNLFNLANGLL 386 (406)
T ss_pred HHHHHHHHHHHHHHHHHHh-hhHHHHH-hhhccccccHHHHHHHHHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHHH
Confidence 1222222222222222211 2222222 2334588999999999999999999999999998877655444444433333
Q ss_pred H
Q 012002 415 S 415 (473)
Q Consensus 415 ~ 415 (473)
.
T Consensus 387 ~ 387 (406)
T PRK15402 387 W 387 (406)
T ss_pred H
Confidence 3
|
|
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-34 Score=253.51 Aligned_cols=392 Identities=20% Similarity=0.246 Sum_probs=285.0
Q ss_pred cCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhh-------hHHHHHHHHHHHhhhhh
Q 012002 26 KYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVAAQ-------NLAMLIVGRILLGCGVG 98 (473)
Q Consensus 26 ~~s~~~~~~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~l~~i~~~~~~~~~-------~~~~l~~~r~l~G~~~~ 98 (473)
|.++...+.+..+..+|.++|++++|+++||+|||+++...++++.+++++++++. -.+++...|++.|+|.|
T Consensus 80 ~~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK~vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIG 159 (538)
T KOG0252|consen 80 HYPSGVLALVNAAALVGTIFGQLFFGWLGDKFGRKKVYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIG 159 (538)
T ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhcccc
Confidence 56778889999999999999999999999999999999999999999999888763 24688889999999999
Q ss_pred hhhhhhhHHHhhcCCCCCchhhHHHHHHHHHHHHHHHHHHhhhcccc-----CC-------ccchHHHHHhhhHHHHHHH
Q 012002 99 FANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTSHI-----KS-------QWGWRISLGLAGIPAALLT 166 (473)
Q Consensus 99 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~-----~~-------~~~wr~~f~~~~~~~~~~~ 166 (473)
+-+|...+..+|...+++||...+...+..+.|...|.+++..+... .. ..=||..+.+.++++++.+
T Consensus 160 GDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~GilaG~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~~l 239 (538)
T KOG0252|consen 160 GDYPLSATIMSESANKKTRGAFIAAVFAMQGFGILAGGIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPALLVL 239 (538)
T ss_pred CCCcchHHHhhhhhhhccccceeEEEEEecchhHhhccHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999988887777777776666654433221 11 1239999999999999888
Q ss_pred HHhhcccCChhhHHhhCCh-HHHHHHHHHHhCCCCchHHHHHHHHHHhhhhhcccc---hHHhhcccCchhHHHHHHHHH
Q 012002 167 VGSLLVTDTPNSLIERGRF-EEGKAVLRKIRGTDKIEPEFLELVEASRIAKEVKHP---FRNLLKRRNRPQLVIAVALQI 242 (473)
Q Consensus 167 ~~~~~~~e~p~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 242 (473)
...+.+||++++.....++ +.+.+..++ .... +.++.++.....+.++.. +...+..+ .-+.++..+..+
T Consensus 240 y~Rl~M~Et~~Y~al~~~~~~~a~~d~~k---~~~~--~~~~~~~~~~~~~~~~~~~~~F~~~f~~~-hg~~Llgt~~~W 313 (538)
T KOG0252|consen 240 YFRLKMPETARYTALVSKKLKQAAGDMKK---VLSV--DIEAESTAESDVPPPSNSFGLFSRLFLRW-HGKHLLGTAGTW 313 (538)
T ss_pred HhhhcCCcchhHHHHhhcCHhhhhhcccc---cccc--ccchhhccccCCCCcccccchHHHHHHHH-HHHHHHHHHHHH
Confidence 8888999999886444332 222111111 1111 001100111111111222 22222222 224577788888
Q ss_pred HhhcchhHHHHHhHHHHHHHcCCCCcchHH--------H-HHHHHHHHHHHHHHHHHHHhhcCcchhHhHHhHHHHHHHH
Q 012002 243 FQQCTGINAIMFYAPVLFKTLGFGGSASLY--------S-TVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQT 313 (473)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~--------~-~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~ 313 (473)
+..-..++....+...+++..|+.+.+... . ..+...+.++|..+...++|++|||+....++.++.+..+
T Consensus 314 FllDiafy~~nL~~s~I~~~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~iq~~GF~~~~i~~~ 393 (538)
T KOG0252|consen 314 FLLDIAFYGQNLFQSVIFSAIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQLMGFFIMTIFFF 393 (538)
T ss_pred HhhhhhhhccccHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhHHHHHhhHHHHHHHHH
Confidence 888888899999999999988887765444 1 1122223344566667789999999999999999988888
Q ss_pred HHHHHHhhhhccCCcccchhhHHHHHHHHHHHHHhhhccccccccccccccccccchhhhHHHHHHHHHHHHHHHHHHHH
Q 012002 314 VIAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFL 393 (473)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (473)
.++..... .......+++..+...+...+.+.....+.+|.+|++.|+++.|+....+-.|++++...+.
T Consensus 394 ~~~~~y~~----------~~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~~F~ 463 (538)
T KOG0252|consen 394 VIAGPYNQ----------LENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAFGFL 463 (538)
T ss_pred HHcCCccc----------ccccCceeehHHHHHHHHhcCCCceeEEeehhhchHHHhhhhhhHHHHhccchHHHHHHHhh
Confidence 77765321 11222223333344444555666677888999999999999999999999999999999999
Q ss_pred HHhh-----hhhhhHHHHHHHHHHHHHHHHHhhccCCCCCChHHH
Q 012002 394 SMLC-----HFKFGIFLFFSGWVLIMSCFVFFLLPETKNVPIEEM 433 (473)
Q Consensus 394 ~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (473)
++.+ ..+....++..+.+.+.+.+..+++||+++++++|+
T Consensus 464 ~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T~l~pEtk~~~leei 508 (538)
T KOG0252|consen 464 YLTDHNYPPNIGVRNVFIILAGCMLLGILFTLLIPETKGKSLEEI 508 (538)
T ss_pred HhhhccCCccccchHHHHHHHHHHHHhHheeEEeecccccCHHHh
Confidence 9988 556666677777777788888888999999999887
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-32 Score=266.00 Aligned_cols=370 Identities=16% Similarity=0.150 Sum_probs=262.3
Q ss_pred HhhhhccccCCCCCcccCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 012002 10 PVVYRRTQQGDDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVAAQNLAMLIVG 89 (473)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~l~~i~~~~~~~~~~~~~l~~~ 89 (473)
+....+...|.+.+++|.+..+.+++.+.+.++..++.++.|+++||+|||++++.+.++.+++++++++++|++.++++
T Consensus 17 ~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 96 (485)
T TIGR00711 17 DSTIVNVAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLLCGVAPNLELMIIF 96 (485)
T ss_pred HHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHHHhCcCCHHHHHHH
Confidence 34445566788899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhhhhhhhhHHHhhcCCCCCchhhHHHHHHHHHHHHHHHHHHhhhccccCCccchHHHHHhhhHHHHHHHHHh
Q 012002 90 RILLGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVGS 169 (473)
Q Consensus 90 r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~ 169 (473)
|+++|++.+...+...+++.|++|+++|+++++++..+..+|..++|.+ .+.+.++++||+.|++.++++++..++.
T Consensus 97 ~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~---~~~l~~~~~w~~~f~~~~~~~~~~~~~~ 173 (485)
T TIGR00711 97 RVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTL---GGWIIENYHWRWIFLINVPIGIIVVVVA 173 (485)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhcc---HhHhccCcCceehhhhhhHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999 5566677899999999888877666553
Q ss_pred -hcccCChhhHHhhCChHHHHHH--------HHH--HhCCC-C-chH-HHHHH----------HHHHhhhhhcccchHHh
Q 012002 170 -LLVTDTPNSLIERGRFEEGKAV--------LRK--IRGTD-K-IEP-EFLEL----------VEASRIAKEVKHPFRNL 225 (473)
Q Consensus 170 -~~~~e~p~~~~~~~~~~~~~~~--------~~~--~~~~~-~-~~~-~~~~~----------~~~~~~~~~~~~~~~~~ 225 (473)
++.||+++. .+++.+..... ... ..+.. + .++ +.... ....+.+++++....++
T Consensus 174 ~~~~~~~~~~--~~~~~d~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (485)
T TIGR00711 174 FFILPRDKPA--ASENFDFLGLLLLSVGLGSLLYGLSEGPERGWFDSNEILILSITGLVAIIAFVVWELTDDNPLVDLRL 251 (485)
T ss_pred HHHcCCcccc--ccCCCcHHHHHHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHcCCCCccCHHH
Confidence 446664431 11111111100 000 01111 1 011 00000 00001111111112345
Q ss_pred hcccCchhHHHHHHHHHHhhcchhHHHHHhHHHHHHH-cCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHhHH
Q 012002 226 LKRRNRPQLVIAVALQIFQQCTGINAIMFYAPVLFKT-LGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEA 304 (473)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~ 304 (473)
++++. ++...+..+.....++....+.|.++++ .|+++.+++.......++.+++.++.|++.||++||+.+..+
T Consensus 252 ~~~~~----~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~g 327 (485)
T TIGR00711 252 FKYRN----FTIGCVYMSLLGLGLYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKIDPRKLVTIG 327 (485)
T ss_pred HcCCC----hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHH
Confidence 55555 3333444444445556667788888866 899999999999999999999999999999999999988877
Q ss_pred hHHHHHHHHHHHHHHhhhhccCCcccchhhHHHHHHHHHHHHHhhhccccccccccccccccccchhhhHHHHHHHHHHH
Q 012002 305 GIQMFLSQTVIAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLF 384 (473)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 384 (473)
.....++...+..... +....+.......+.+.+.+....+. .....+..|++.++++.|+.+....+|
T Consensus 328 ~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~l~g~g~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~g 396 (485)
T TIGR00711 328 LILYAVGFYWRAFTFT----------PDTPFLAIALPQFIRGFGMGCFFMPL-TTIALSGLPPHKIARGSSLSNFTRQLG 396 (485)
T ss_pred HHHHHHHHHHHhccCC----------CCCCHHHHHHHHHHHHHHHHHHHHHH-HHHHHhcCCHHHHhHHHHHHHHHHHHH
Confidence 7666666554442110 11111111222222222222222223 233457779999999999999999999
Q ss_pred HHHHHHHHHHHhhhh
Q 012002 385 TFVIAQAFLSMLCHF 399 (473)
Q Consensus 385 ~~~~~~~~~~~~~~~ 399 (473)
+.+++.+.+.+.++.
T Consensus 397 ~~ig~~i~g~~~~~~ 411 (485)
T TIGR00711 397 GSIGTALITTILTNR 411 (485)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999988754
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-32 Score=256.68 Aligned_cols=332 Identities=14% Similarity=0.125 Sum_probs=241.7
Q ss_pred ccCCCCCcccCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhh
Q 012002 17 QQGDDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVAAQNLAMLIVGRILLGCG 96 (473)
Q Consensus 17 ~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~l~~i~~~~~~~~~~~~~l~~~r~l~G~~ 96 (473)
..|++.+++|+++++.+++.+++.+++.++++++|+++||+|||+++..+..+.+++.++++++++++.+++.|+++|++
T Consensus 28 ~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~ 107 (401)
T PRK11043 28 AFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWVESAAQLLVLRFVQAVG 107 (401)
T ss_pred hHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Confidence 34567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhHHHhhcCCCCCchhhHHHHHHHHHHHHHHHHHHhhhccccCCccchHHHHHhhhHHHHHHHHHhhcccCCh
Q 012002 97 VGFANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVGSLLVTDTP 176 (473)
Q Consensus 97 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p 176 (473)
.+...+...+++.|+++++++++..+.......+|..++|.+ .+.+.++++||+.|++.++..++..+..++++|++
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i---~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (401)
T PRK11043 108 VCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLL---GAWLLNHFGWQAIFATLFAITLLLILPTLRLKPSK 184 (401)
T ss_pred hHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhcCChHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 988888888999999999999999999988899999999998 44455667999999998888877766655566543
Q ss_pred hhHHhhCChHHHHHHHHHHhCCCCchHHHHHHHHHHhhhhhcccchHHhhcccCchhHHHHHHHHHHhhcchhHHHHHhH
Q 012002 177 NSLIERGRFEEGKAVLRKIRGTDKIEPEFLELVEASRIAKEVKHPFRNLLKRRNRPQLVIAVALQIFQQCTGINAIMFYA 256 (473)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (473)
+. ++ + ++.+.++++.+|++..+ ...+........+..+..+.
T Consensus 185 ~~----~~-~-----------------------------~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~ 226 (401)
T PRK11043 185 KA----RK-Q-----------------------------SQDALTFKQLLKSKTYL----GNVLIFAACSAAFFAWLTGS 226 (401)
T ss_pred Cc----cc-c-----------------------------chHHHHHHHHHcChhHH----HHHHHHHHHHHHHHHHHHHh
Confidence 20 00 0 00012344455554422 22222222233345566678
Q ss_pred HHHHHHcCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHhHHhHHHHHHHHHHHHHHhhhhccCCcccchhhHH
Q 012002 257 PVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKDHSEDLHTGFAV 336 (473)
Q Consensus 257 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (473)
|.+.++.|+++.+.+.......++.+++.+..+++.||+++|+..........++...+...... .....+
T Consensus 227 p~~~~~~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~ 297 (401)
T PRK11043 227 PFILEQMGYSPADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQLLPWLLVLFAVSVIAIWLASLL---------SHPSLV 297 (401)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHh---------ccCcHH
Confidence 88888899999888988888888899999999999999999887765555544444333222110 011111
Q ss_pred HHHHHHHHHHHhhhccccccccccccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 012002 337 LVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHFK 400 (473)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (473)
.............+ ...+.......+..| +.++++.|+.+.....++..++.+.+.+.+...
T Consensus 298 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~~~ 359 (401)
T PRK11043 298 PLLIPFCVMAAANG-AIYPIVVAQALRPFP-QATGKAAALQNTLQLGLCFLASLLVSALISTPL 359 (401)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHhhhCc-ccChHHHHHHHHHHHHHHHHHHHHHHHccCCCh
Confidence 12222222222222 222343444446555 579999999999999999999999998877543
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-32 Score=253.74 Aligned_cols=348 Identities=14% Similarity=0.142 Sum_probs=243.7
Q ss_pred CCCCCcccCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHH-HHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhh
Q 012002 19 GDDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTML-IAGIFFIAGVAFNVAAQNLAMLIVGRILLGCGV 97 (473)
Q Consensus 19 ~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~-~~~~l~~i~~~~~~~~~~~~~l~~~r~l~G~~~ 97 (473)
+.+++++|.|..+.|++.+.+.+...+.+++.|+++||+||||.++ .+..+..++.++++++++++.+++.|+++|.+.
T Consensus 22 ~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 101 (375)
T TIGR00899 22 LFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLFAWNRNYFLLLVLGVLLSSFA 101 (375)
T ss_pred HHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhh
Confidence 3467889999999999999999999999999999999999988755 466666778888999999999999999999888
Q ss_pred hhhhhhhhHHHhhcCCCCCchhh--HHHHHHHHHHHHHHHHHHhhhccccCCccchHHHHHhhhHHHHHHHHHh-hcccC
Q 012002 98 GFANQAVPLFLSEIAPTRIRGGL--NILFQLNVTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVGS-LLVTD 174 (473)
Q Consensus 98 ~~~~~~~~~~i~~~~~~~~r~~~--~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~-~~~~e 174 (473)
+...|...++..|+.|+++|++. .+....+.++|.++++.+ .+.+.+.++||+.|++.+++.++..+.. +++||
T Consensus 102 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~---~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 178 (375)
T TIGR00899 102 STANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPL---AFWLALGFGFTVMFLTAALAFVLCGVLVWLFLPS 178 (375)
T ss_pred hhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhH---HHHHHHhcccHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 88889888999999887777654 577888889999999998 4445556799999999988877666654 45787
Q ss_pred ChhhHHhhCChHHHHHHHHHHhCCCCchHHHHHHHHHHhhhhhcccchHHhhcccCchhHHHHHHHHHHhhcchhHHHHH
Q 012002 175 TPNSLIERGRFEEGKAVLRKIRGTDKIEPEFLELVEASRIAKEVKHPFRNLLKRRNRPQLVIAVALQIFQQCTGINAIMF 254 (473)
Q Consensus 175 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (473)
+|++..++ + ...+.++.++++..+..... .+...........
T Consensus 179 ~~~~~~~~----~------------------------------~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~ 220 (375)
T TIGR00899 179 YPRGAPGA----L------------------------------TRLEVRGLLASRDTRLLFVA----CTLMWGCNILYII 220 (375)
T ss_pred cccCcccc----c------------------------------CcchhhhhhcCcchHHHHHH----HHHHHHHHHHHHh
Confidence 66321000 0 00111223444432222221 1222222333445
Q ss_pred hHHHHH-HHcCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHhHHhHHHHHHHHHHHHHHhhhhccCCcccchh
Q 012002 255 YAPVLF-KTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKDHSEDLHTG 333 (473)
Q Consensus 255 ~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (473)
+.|.++ +++|.++.+.+.......+..+++.++.+++.||++||+.+..+.....+........ +
T Consensus 221 ~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~------------~-- 286 (375)
T TIGR00899 221 NMPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAAD------------N-- 286 (375)
T ss_pred hhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHH------------H--
Confidence 566666 4589999888888777777788889999999999999998877655443333222211 1
Q ss_pred hHHHHHHHHHHHHHhhhccccccccccccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHH
Q 012002 334 FAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHFKFGIFLFFSGWVLI 413 (473)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (473)
..+.......+...+.+ ...+....+..|..|+ +++++.++.+...++|..++|.+.|.+.+..++...+...+++.+
T Consensus 287 ~~~~~~~~~~~~g~~~g-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g~~~~~~~~~~~~~ 364 (375)
T TIGR00899 287 SLWALLMLQLLNAIFIG-ILAGIGMLYFQDLMPG-RAGAATTLYTNTGRVGWIIAGSVGGILAERWSYHAVYWFAIVMLI 364 (375)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCcc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHH
Confidence 12222222222222222 2223445566788776 467999999999999999999999999998887777776666666
Q ss_pred HHHHHHhhcc
Q 012002 414 MSCFVFFLLP 423 (473)
Q Consensus 414 ~~~~~~~~~~ 423 (473)
.+.+...+++
T Consensus 365 ~~~~~~~~~~ 374 (375)
T TIGR00899 365 VALFCLLLIK 374 (375)
T ss_pred HHHHHHheec
Confidence 6666665543
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-31 Score=248.71 Aligned_cols=342 Identities=13% Similarity=0.111 Sum_probs=241.1
Q ss_pred cccCCCCCcccCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhh
Q 012002 16 TQQGDDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVAAQNLAMLIVGRILLGC 95 (473)
Q Consensus 16 ~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~l~~i~~~~~~~~~~~~~l~~~r~l~G~ 95 (473)
+..|.+.+++|.|..++|++.+.+.+++.+++++.|+++||+|||+++..+.++.+++++++++++|++.++++|+++|+
T Consensus 27 ~~lp~~~~~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~ 106 (381)
T PRK03633 27 TLVPLWLAQEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFAAGCAGLGLMVGFWSWLAWRFVAGI 106 (381)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 44566777889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhhHHHhhcCCCCCchhhHHHHHHHHHHHHHHHHHHhhhccccCCccchHHHHHhhhHHHHHHHHH-hhcccC
Q 012002 96 GVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVG-SLLVTD 174 (473)
Q Consensus 96 ~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~-~~~~~e 174 (473)
+.+...+...+.+.+..++++|+++++....+.++|..+|+.++.. +.+...|+.. +..+........+ ....++
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~---l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 182 (381)
T PRK03633 107 GCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSK---VSTELMSVLP-WVTGLVLAAILPLLFTRILN 182 (381)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc---ccccccchHH-HHHHHHHHHHHHHHHhcccC
Confidence 9999999888888899999999999999999999999999999443 3332222222 2222222111111 111222
Q ss_pred ChhhHHhhCChHHHHHHHHHHhCCCCchHHHHHHHHHHhhhhhcccchHHhhcccCchhHHHHHHHHHHhhcchhHHHHH
Q 012002 175 TPNSLIERGRFEEGKAVLRKIRGTDKIEPEFLELVEASRIAKEVKHPFRNLLKRRNRPQLVIAVALQIFQQCTGINAIMF 254 (473)
Q Consensus 175 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (473)
+++ + +++..+.++.++++..+ ......+.....+.....
T Consensus 183 ~~~------~-------------------------------~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 221 (381)
T PRK03633 183 QQA------E-------------------------------NHDSTSIWPMLKLRQAR----LGVNGCIISGIVLGSLYG 221 (381)
T ss_pred CCC------C-------------------------------CCCCCCHHHHHHhcchH----HHHHHHHHHHHHHHHHHH
Confidence 100 0 00012234455555422 211112222223344556
Q ss_pred hHHHHHHHcCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHhHHhHHHHHHHHHHHHHHhhhhccCCcccchhh
Q 012002 255 YAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKDHSEDLHTGF 334 (473)
Q Consensus 255 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (473)
+.|.+.++.|.++...+.......++.+++++..+++.||+++|+.+..+.....++...... ..
T Consensus 222 ~lp~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~-------------~~-- 286 (381)
T PRK03633 222 LMPLYLNHQGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAMLS-------------QA-- 286 (381)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHhh-------------hH--
Confidence 788888888999888898888899999999999999999999999888776666555433321 00
Q ss_pred HHHHHHHHHHHHHhhhccccccccccccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHH
Q 012002 335 AVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHFKFGIFLFFSGWVLIM 414 (473)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (473)
... . ...+... ......|.......|..|++.++...+..+...++|..++|.+.|.+.|+.++...+...+.+.+.
T Consensus 287 ~~~-~-~~~l~g~-~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g~~~~f~~~~~~~l~ 363 (381)
T PRK03633 287 AMA-P-ALFILGA-AGFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNYSDNLLFIMIASVSFI 363 (381)
T ss_pred HHH-H-HHHHHHH-HHHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 111 1 1111111 112233555666678888888888888888888999999999999999988876666655555554
Q ss_pred HHHHHh
Q 012002 415 SCFVFF 420 (473)
Q Consensus 415 ~~~~~~ 420 (473)
..+..+
T Consensus 364 ~~~~~~ 369 (381)
T PRK03633 364 YLLMLL 369 (381)
T ss_pred HHHHHH
Confidence 444443
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-31 Score=252.32 Aligned_cols=339 Identities=12% Similarity=0.063 Sum_probs=236.5
Q ss_pred CCCCcccCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHH--------hhhHHHHHHHHH
Q 012002 20 DDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVA--------AQNLAMLIVGRI 91 (473)
Q Consensus 20 ~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~l~~i~~~~~~~--------~~~~~~l~~~r~ 91 (473)
.+++++|+|..++|++.+++.+++.++++++|+++||+||||+++.+.++..++.+.... .++++.++++|+
T Consensus 41 ~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~ 120 (392)
T PRK12382 41 FVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAGLAYLLAAILPVSAPFKFALLVVGRL 120 (392)
T ss_pred HHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHH
Confidence 357889999999999999999999999999999999999999999998887776553322 368899999999
Q ss_pred HHhhhhhhhhhhhhHHHhhcCCCCCchhhHHHHHHHHHHHHHHHHHHhhhccccCCccchHHHHHhhhHHHHHHHHHhhc
Q 012002 92 LLGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVGSLL 171 (473)
Q Consensus 92 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~ 171 (473)
++|++.+...+...+++.|++|+++|++++++.+.+..+|.+++|+++. .+.+.+|||+.+.+..+..++.......
T Consensus 121 l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~---~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 197 (392)
T PRK12382 121 ILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGL---LLHSHFGFAALALTTMVLPLLAWAFNGT 197 (392)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHH---HHHhccChHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999944 3445578998877655544333322222
Q ss_pred ccCChhhHHhhCChHHHHHHHHHHhCCCCchHHHHHHHHHHhhhhhcccchHHhhcccCchhHHHHHHHHHHhhcchhHH
Q 012002 172 VTDTPNSLIERGRFEEGKAVLRKIRGTDKIEPEFLELVEASRIAKEVKHPFRNLLKRRNRPQLVIAVALQIFQQCTGINA 251 (473)
Q Consensus 172 ~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (473)
.||.++. + + .+.+.++.++...... .. .+........
T Consensus 198 ~~~~~~~-----~--~------------------------------~~~~~~~~~~~~~~~~-~~-----~~l~~~~~~~ 234 (392)
T PRK12382 198 VRKVPAH-----A--G------------------------------ERPSLWSVVGLIWKPG-LG-----LALQGVGFAV 234 (392)
T ss_pred ccCCCCC-----c--c------------------------------cCchHHHHHHHHHHhH-HH-----HHHHHHHHhH
Confidence 3332110 0 0 0001111111110011 11 1111223344
Q ss_pred HHHhHHHHHHHcCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHhHHhHHHHHHHHHHHHHHhhhhccCCcccc
Q 012002 252 IMFYAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKDHSEDLH 331 (473)
Q Consensus 252 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (473)
...+.|.++++.+++. .+.......++.+++++..+++.||+++|+.+..+..+..++..++... +
T Consensus 235 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~------------~ 300 (392)
T PRK12382 235 IGTFVSLYFASKGWAM--AGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLA------------P 300 (392)
T ss_pred HHHHHHHHHHhcCCch--hHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHc------------c
Confidence 5566777777766653 4556666778888999999999999999999888777666665544331 1
Q ss_pred hhhHHHHHHHHHHHHHhhhccccccccccccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHH
Q 012002 332 TGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHFKFGIFLFFSGWV 411 (473)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (473)
..+.......+...+.. ...+.......|.+|++.|+++.|+.+....++..++|.+.|.+.++.++...+.+.+++
T Consensus 301 --~~~~~~~~~~l~g~~~~-~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g~~~~~~~~~~~ 377 (392)
T PRK12382 301 --TAWVALAGAALTGAGCS-LIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSFGYPSVFLAGAIS 377 (392)
T ss_pred --cHHHHHHHHHHHHHHHH-hHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHH
Confidence 11222222222222222 222334455578889999999999999999999999999999999998887777666666
Q ss_pred HHHHHHHHhh
Q 012002 412 LIMSCFVFFL 421 (473)
Q Consensus 412 ~~~~~~~~~~ 421 (473)
.+.+.+..+.
T Consensus 378 ~~~~~~~~~~ 387 (392)
T PRK12382 378 AVLGIIVTIL 387 (392)
T ss_pred HHHHHHHHHh
Confidence 6655555443
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-33 Score=262.93 Aligned_cols=364 Identities=13% Similarity=0.037 Sum_probs=260.6
Q ss_pred cCCCCCcccCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHH-----hhhHHHHHHHHHH
Q 012002 18 QGDDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVA-----AQNLAMLIVGRIL 92 (473)
Q Consensus 18 ~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~l~~i~~~~~~~-----~~~~~~l~~~r~l 92 (473)
.|...++++.+..+.|++.+.+.+++.+++++.|+++||+|||+++..+..+.+++.+..+. .++++.+++.|++
T Consensus 40 ~~~~~~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 119 (417)
T PRK10489 40 VPVQIQMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALNAFLPEPSLLAIYLLGLW 119 (417)
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence 34455666889999999999999999999999999999999999999988888877766543 4678999999999
Q ss_pred HhhhhhhhhhhhhHHHhhcCCCCCchhhHHHHHHHHHHHHHHHHHHhhhccccCCccchHHHHHhhhHHHHHHHHHhhcc
Q 012002 93 LGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVGSLLV 172 (473)
Q Consensus 93 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~ 172 (473)
+|++.+...+...+++.|++|+++|+++.++.....++|..+||.++. .+.+..+|++.|++.++..++..++.+.+
T Consensus 120 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g---~l~~~~~~~~~~~~~~~~~~~~~~~~~~l 196 (417)
T PRK10489 120 DGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGG---LLIAAGGVAWNYGLAAAGTFITLLPLLRL 196 (417)
T ss_pred HHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHH---HHHHHHhhHHHHHHHHHHHHHHHHHHHhC
Confidence 999999888999999999999999999999999999999999999944 34445689999998887777766666667
Q ss_pred cCChhhHHhhCChHHHHHHHHHHhCCCCchHHHHHHHHHHhhhhhcccchHHhhcccCchhHHHHHHHHHHhhcchhHHH
Q 012002 173 TDTPNSLIERGRFEEGKAVLRKIRGTDKIEPEFLELVEASRIAKEVKHPFRNLLKRRNRPQLVIAVALQIFQQCTGINAI 252 (473)
Q Consensus 173 ~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (473)
|++++.. +++ ++ .. ++..+.++..++++..+..++ ..++.. .....
T Consensus 197 ~~~~~~~--~~~-~~----------------~~----------~~~~~~~~~~~~~~~~~~~~~----~~~~~~-~~~~~ 242 (417)
T PRK10489 197 PALPPPP--QPR-EH----------------PL----------RSLLAGFRFLLASPVVGGIAL----LGGLLT-MASAV 242 (417)
T ss_pred CCCCCCC--ccc-cc----------------ch----------HHHHHHHHHHHcChHHHHHHH----HHHHHH-HHHhH
Confidence 7654210 000 00 00 000112333444443222111 111111 12345
Q ss_pred HHhHHHHHHH-cCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHhHHhHHHHHHHHHHHHHHhhhhccCCcccc
Q 012002 253 MFYAPVLFKT-LGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKDHSEDLH 331 (473)
Q Consensus 253 ~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (473)
..+.|.+.++ +|.++...+.+.+...++.+++.++.+++.||.++++.+..+.....++.+.+... +
T Consensus 243 ~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~------------~ 310 (417)
T PRK10489 243 RVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLM------------P 310 (417)
T ss_pred HHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHcc------------c
Confidence 6677888877 89999999999999999999999999999999777777776665555554433321 1
Q ss_pred hhhHHHHHHHHHHHHHhhhccccccccccccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhH-HHHHHHH
Q 012002 332 TGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHFKFGI-FLFFSGW 410 (473)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 410 (473)
..+......++.+. ......+...++..|..|++.||++.|+.+....++..+++.+.|.+.+..+... +...+++
T Consensus 311 --~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g~~~~~~~~~~~ 387 (417)
T PRK10489 311 --MWILAVLCLALFGY-LSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMTPVASASASGFG 387 (417)
T ss_pred --hHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhHHHHHHHH
Confidence 11222222222222 2222223445677899999999999999999999999999999999999887554 4445555
Q ss_pred HHHHHHHHHhhccCCCCCChHHH
Q 012002 411 VLIMSCFVFFLLPETKNVPIEEM 433 (473)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~ 433 (473)
..+.+++....+++.|+++.+|.
T Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~ 410 (417)
T PRK10489 388 LLIIGVLLLLVLGELRRFRQTPP 410 (417)
T ss_pred HHHHHHHHHHhcccccccccccc
Confidence 66667777777787777665554
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-31 Score=250.89 Aligned_cols=355 Identities=15% Similarity=0.088 Sum_probs=241.0
Q ss_pred CCCcccCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHH---H-hhhHHHHHHHHHHHhhh
Q 012002 21 DSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNV---A-AQNLAMLIVGRILLGCG 96 (473)
Q Consensus 21 ~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~l~~i~~~~~~---~-~~~~~~l~~~r~l~G~~ 96 (473)
+.+++|+++++.|++.+.+.+++.++++++|+++||+|||+++..+..+.+++++++. . .++++.+++.|+++|++
T Consensus 39 ~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~G~g 118 (402)
T TIGR00897 39 FLKALGLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAFIVFGLGHANYPLILLFYGIRGLG 118 (402)
T ss_pred HHHHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHcc
Confidence 3467899999999999999999999999999999999999999999999999877653 3 35788889999999999
Q ss_pred hhhhhhhhhHHHhhcCCCCCchhhHHHHHHHHHHHH-HHHHHHhhhccccCCccchHHHHHhhhHHHHHHHHH-hhcccC
Q 012002 97 VGFANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGI-LFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVG-SLLVTD 174 (473)
Q Consensus 97 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~-~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~-~~~~~e 174 (473)
.+...+.....+.+++|+++|++++++.+++.++|. ++++.+ .+.+.+.+||+..++.......+..++ .++.++
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~---~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (402)
T TIGR00897 119 YPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYY---SSYAIPAFGEMNTLWSALAFVLTGGVIALFSNKD 195 (402)
T ss_pred hHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhcccccchHHHHHHHHHHHHHHHHHHHhccCC
Confidence 998888888899999999999999999999999997 578887 444555677665555444333333333 233444
Q ss_pred ChhhHHhhCChHHHHHHHHHHhCCCCchHHHHHHHHHHhhhhhcccchHHhhcccCchhHHHHHHHHHHhhcchhHHHHH
Q 012002 175 TPNSLIERGRFEEGKAVLRKIRGTDKIEPEFLELVEASRIAKEVKHPFRNLLKRRNRPQLVIAVALQIFQQCTGINAIMF 254 (473)
Q Consensus 175 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (473)
.++.. .+++ + .+. ++..+.++.++|++. ++...+..++.....+....
T Consensus 196 ~~~~~-~~~~-~----------------~~~----------~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~ 243 (402)
T TIGR00897 196 IFTPQ-HMQT-R----------------EKF----------SELGKAATILFTNPN----VLLGGMVRIINTIGLFGFAV 243 (402)
T ss_pred CCCcc-cccC-C----------------cch----------hhHHHHHHHHHcChh----HHHHHHHHHHHHHHHHHHHH
Confidence 32100 0000 0 000 000112344556555 44444555555566777888
Q ss_pred hHHHHHHHcCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHhH-HhHHHHHHHHHHHHHHhhhhccCCcccchh
Q 012002 255 YAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLE-AGIQMFLSQTVIAIILGIKVKDHSEDLHTG 333 (473)
Q Consensus 255 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (473)
+.|.+.+++|++..+.+.......++.+++.+..|+++||++||+.+.. +.....+....+..... . ...
T Consensus 244 ~~p~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~---~------~~~ 314 (402)
T TIGR00897 244 FLPMFVAELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQ---H------FGH 314 (402)
T ss_pred HHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHH---c------cCC
Confidence 9999988899999998888888999999999999999999998887642 22223332222221110 0 001
Q ss_pred hHHHHHHHHHHHHHhhhccccccccccccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHH
Q 012002 334 FAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHFKFGIFLFFSGWVLI 413 (473)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (473)
..+.........+.+.. ...+.. ....|..| ++|+++.|+.+....+++.++|.+.+.+.+..++...+...+++.+
T Consensus 315 ~~~~~~~~~~~~G~~~~-~~~~~~-~~~~~~~~-~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~a~~~~ 391 (402)
T TIGR00897 315 SFAVALIIAIALGIFLA-GYVPLA-AVFPTLAP-KHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFGAIGVVWIFAALYV 391 (402)
T ss_pred cHHHHHHHHHHHHHHHH-HHHHHH-HHHHhhCc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHH
Confidence 11222222222222221 222332 34456644 6899999999999999999999999999998886665555555554
Q ss_pred HHHHHHhhc
Q 012002 414 MSCFVFFLL 422 (473)
Q Consensus 414 ~~~~~~~~~ 422 (473)
++.+...++
T Consensus 392 i~~~~~~~~ 400 (402)
T TIGR00897 392 VSAFLTAFI 400 (402)
T ss_pred HHHHHHHHh
Confidence 544444443
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=251.65 Aligned_cols=347 Identities=15% Similarity=0.184 Sum_probs=234.8
Q ss_pred cccCCCCCcccCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhh
Q 012002 16 TQQGDDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVAAQNLAMLIVGRILLGC 95 (473)
Q Consensus 16 ~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~l~~i~~~~~~~~~~~~~l~~~r~l~G~ 95 (473)
-..+++++.+|++++..|++.+.+.+.+.+++|++|+++|||+||+++.+|..++.++.++++++..||+++++|.+.|+
T Consensus 54 gv~~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~Av~~~~fs~~Fwq~~l~R~~vGi 133 (493)
T KOG1330|consen 54 GVLKEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTLAVFASGFSNHFWQVLLCRGFVGI 133 (493)
T ss_pred hhhHHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhhHHHhhcCCCCCchhhHHHHHHHHHHHHHHHHHHhhhccccCCccchHHHHHhhhHHHHHHHHHh-hcccC
Q 012002 96 GVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVGS-LLVTD 174 (473)
Q Consensus 96 ~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~-~~~~e 174 (473)
|.+...|+++++++|.+|..+|++++++++.+.++|..+|.+++...+.+.. .|||.|+..+++++++.++. ++.+|
T Consensus 134 GeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~--~Wr~af~~~avl~vi~~~L~~~f~~e 211 (493)
T KOG1330|consen 134 GEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTF--WWRWAFRGSAVLGVIVGLLVFLFVRE 211 (493)
T ss_pred chhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCcc--ceEEEEEeehHHHHHHHHHHHhhccC
Confidence 9999999999999999999999999999999999999999998555444433 39999999999999988875 45666
Q ss_pred ChhhHHhhCChHHHHHHHHHHhCCCCchHHHHHHHHHHhhhhhcc---cchHHhhcccCchhHHHHHHHHHHhhcchhHH
Q 012002 175 TPNSLIERGRFEEGKAVLRKIRGTDKIEPEFLELVEASRIAKEVK---HPFRNLLKRRNRPQLVIAVALQIFQQCTGINA 251 (473)
Q Consensus 175 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (473)
++|. ..+|.. +++ +..+... ++.+.+.|.+.. ....+.+.........
T Consensus 212 P~rg-----a~~~~~-------~~~-------------~~~~~~ts~~kDl~~l~~~~v~----v~~sl~~~a~~fv~Gs 262 (493)
T KOG1330|consen 212 PERG-----ARDEVD-------GEN-------------KMVKPFTSVWKDLKVLAKIKVF----VLSSLGIIAAQFVIGS 262 (493)
T ss_pred cccc-----cccccc-------cCC-------------cCCCCccchHHHHHHHHccCce----eeehHHHHHHHHhccc
Confidence 5432 111100 000 0001111 222233333332 2222222222333344
Q ss_pred HHHhHHHHH----HHcCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCcc----hhHhHHhHHHHHHHHHHHHHHhhhh
Q 012002 252 IMFYAPVLF----KTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRR----MLLLEAGIQMFLSQTVIAIILGIKV 323 (473)
Q Consensus 252 ~~~~~~~~~----~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (473)
+..|.|.+. +-.|++..+..++..+...++.+|.+.+|.++||+.|+ ......-+.++.+......+.....
T Consensus 263 ~sww~p~~~~~~~~~~~~~~~~~~ifg~vt~~~G~lGvl~Ggiisd~~~~~~~~~~~~~~~q~~~~~g~~~s~~~L~~~~ 342 (493)
T KOG1330|consen 263 LSWWAPAFIYYSYELIGFDHNATLIFGGVTCAGGSLGVLFGGIISDKLSRIFPNSGTLRASQLSAALGAPLSIPFLFLFP 342 (493)
T ss_pred cchhhhhHHHHHHHHhCCccccchhhhhHHHhhchhhheehHHHHHHHHHhcccccchhHHHHHHhhhhhHHHHHHHHHH
Confidence 555555433 33677778888888888899999999999999994321 2222222222222111111111100
Q ss_pred ccCCcccchhhHHHHHHHHHHHHHhhhccccccccccccccccccchhhhHHHHHHHHHHHHHHH-HHHHHHHhhhh
Q 012002 324 KDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVI-AQAFLSMLCHF 399 (473)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 399 (473)
.. .....+..++++.+........+.+. .-+..|++|++.|.++.++...+..+.+-.+ |++.|.+.|+.
T Consensus 343 ~~-----~~~s~~~~~il~~~g~~~~~~~~a~n-~~i~l~vV~p~~Rt~a~a~~~~~~h~fgd~~~p~ivGilsd~l 413 (493)
T KOG1330|consen 343 AF-----TSSSMIFGLILFLVGETISWFNWATN-NPIFLEVVPPSRRTTAYALDTVFEHIFGDAASPYIVGILSDKL 413 (493)
T ss_pred hh-----hhHHHHHHHHHHHHHHHHHhcccccc-cceeeEecCcccccHHHHHHHHHHHHhccCCCcceehhHHHHh
Confidence 00 11222222222222222222233333 3344699999999999999998877655555 45899888765
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-32 Score=261.62 Aligned_cols=364 Identities=15% Similarity=0.159 Sum_probs=256.3
Q ss_pred ccccCCCCCcccCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHh
Q 012002 15 RTQQGDDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVAAQNLAMLIVGRILLG 94 (473)
Q Consensus 15 ~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~l~~i~~~~~~~~~~~~~l~~~r~l~G 94 (473)
....|.+.+++|.+..+.+++.+.+.++..++.+++|+++||+|||++++.+..+.+++.++++++++++.++++|+++|
T Consensus 30 ~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g 109 (471)
T PRK10504 30 NTALPSMAQSLGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGSLFCALSGTLNELLLARVLQG 109 (471)
T ss_pred HHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 34566777889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhhhHHHhhcCCCCCchhhHHHHHHHHHHHHHHHHHHhhhccccCCccchHHHHHhhhHHHHHHHHHhh-ccc
Q 012002 95 CGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVGSL-LVT 173 (473)
Q Consensus 95 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~-~~~ 173 (473)
++.+...+....++.|++|+++|+++.++.....++|..++|.+ .+.+.++.+||+.|++......+..++.. ..|
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~---~g~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~ 186 (471)
T PRK10504 110 VGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPAL---GGLLVEYASWHWIFLINIPVGIIGAIATLMLMP 186 (471)
T ss_pred hhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHH---HHHHHhhccHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999 44455567999999998877766655543 345
Q ss_pred CChhhHHhhCChHHHHHHHH--------H-HhCCCCc--hH-HHHH-----------HHHHHhhhhhcccchHHhhcccC
Q 012002 174 DTPNSLIERGRFEEGKAVLR--------K-IRGTDKI--EP-EFLE-----------LVEASRIAKEVKHPFRNLLKRRN 230 (473)
Q Consensus 174 e~p~~~~~~~~~~~~~~~~~--------~-~~~~~~~--~~-~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~ 230 (473)
+.+. .+.+.+....... . ..+.+.. .. .... ...++++.+++..+ .+++|++.
T Consensus 187 ~~~~---~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~ 262 (471)
T PRK10504 187 NYTM---QTRRFDLSGFLLLAVGMATLTLALDGSKGLGLSPLAIAGLVAVGVVALLLYLLHARNNNRALFS-LKLFRTRT 262 (471)
T ss_pred Cccc---cCCCCChHHHHHHHHHHHHHHHHHhcCCcCCcchHHHHHHHHHHHHHHHHHHHHHhcCCCCccC-HHHhcccc
Confidence 4331 1112222111100 0 0111100 00 0000 00000111111112 23566665
Q ss_pred chhHHHHHHHHHHhhcchhHHHHHhHHHHHHH-cCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHhHHhHHHH
Q 012002 231 RPQLVIAVALQIFQQCTGINAIMFYAPVLFKT-LGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMF 309 (473)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~ 309 (473)
+.......++..........+.|++++. .|.++...++......++.+++.++.+++.||++||+.+..+.....
T Consensus 263 ----~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~ 338 (471)
T PRK10504 263 ----FSLGLAGSFAGRIGSGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRFGYRRVLVATTLGLA 338 (471)
T ss_pred ----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHH
Confidence 3333444444444555666778888875 89999999999888888899999999999999999999988777666
Q ss_pred HHHHHHHHHHhhhhccCCcccchhhHHHHHHHHHHHHHhhhccccccccccccccccccchhhhHHHHHHHHHHHHHHHH
Q 012002 310 LSQTVIAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIA 389 (473)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 389 (473)
+...++.... .....+.........+.+..... +....+..+..|++.++.+.|+.+....+|..+++
T Consensus 339 ~~~~~~~~~~-----------~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~ 406 (471)
T PRK10504 339 LVSLLFMLVA-----------LLGWYYLLPFVLFLQGMVNSTRF-SSMNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGV 406 (471)
T ss_pred HHHHHHHhcc-----------ccccHHHHHHHHHHHHHHHHHHH-HHHHHHHHHcCCHHhccchHHHHHHHHHHHHHHHH
Confidence 6655544321 11111111111111112222122 23345556788999999999999999999999999
Q ss_pred HHHHHHhhhhhh
Q 012002 390 QAFLSMLCHFKF 401 (473)
Q Consensus 390 ~~~~~~~~~~~~ 401 (473)
.+.|.+.+..++
T Consensus 407 ~i~g~ll~~~g~ 418 (471)
T PRK10504 407 TIAGLLLGLFGQ 418 (471)
T ss_pred HHHHHHHHHhhh
Confidence 999998877654
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-32 Score=255.61 Aligned_cols=327 Identities=20% Similarity=0.276 Sum_probs=242.3
Q ss_pred CCCCcccCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhh
Q 012002 20 DDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVAAQNLAMLIVGRILLGCGVGF 99 (473)
Q Consensus 20 ~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~l~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~ 99 (473)
.+.+++|.+..+.+++.+++.++..+++++.|+++||+|||+++..+.++.+++.++..++++++.++++|++.|++.+.
T Consensus 22 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~ 101 (352)
T PF07690_consen 22 YLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAFASNFWLLLIARFLLGIGSGF 101 (352)
T ss_dssp HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhhhhhHHHHhhhcccccccccc
Confidence 67788999999999999999999999999999999999999999999999999977777778888999999999999999
Q ss_pred hhhhhhHHHhhcCCCCCchhhHHHHHHHHHHHHHHHHHHhhhccccCCccchHHHHHhhhHHHHHHHHH-hhcccCChhh
Q 012002 100 ANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVG-SLLVTDTPNS 178 (473)
Q Consensus 100 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~-~~~~~e~p~~ 178 (473)
..+...+++.|++|+++|++++++.+.+.++|.++++.+ .+.+.+..+||+.|++.+++.++..++ ..+++++|+.
T Consensus 102 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l---~~~l~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~ 178 (352)
T PF07690_consen 102 FSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLL---GGFLISYFGWRWAFLISAILSLIAAILFILFLPEPPPP 178 (352)
T ss_dssp HHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHH---HHHCCCHCHHCCHHHHHHHHHHHHHHHHHCCC---STT
T ss_pred ccccccccccccchhhhhhhccccccchhhhhhhcccch---hhhhhhccccccccccccchhhhhhhhHhhhhhhcccc
Confidence 999999999999999999999999999999999999999 555556788999999999998888765 3445544422
Q ss_pred HHhhCChHHHHHHHHHHhCCCCchHHHHHHHHHHhhhhhccc-chHHhhcccCchhHHHHHHHHHHhhcchhHHHHHhHH
Q 012002 179 LIERGRFEEGKAVLRKIRGTDKIEPEFLELVEASRIAKEVKH-PFRNLLKRRNRPQLVIAVALQIFQQCTGINAIMFYAP 257 (473)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (473)
...+++.++. ++.+++.. .++.+++++..+ ......+...........+.|
T Consensus 179 ~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 230 (352)
T PF07690_consen 179 RERESPKESE------------------------SKKPKPLKPGFKSLFKNPVLW----ILLIAFFLFFFVFSGFSFFLP 230 (352)
T ss_dssp TT--SSTTTT--------------------------HHHCCCH-CTHHHHHHCCH----HHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccc------------------------cccccccccccccccccchhh----hhhhhhhHHHHHHHHhhcccc
Confidence 1111111100 00111112 255555555432 233333333445566788888
Q ss_pred HH-HHHcCCC-CcchHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHhHHhHHHHHHHHHHHHHHhhhhccCCcccchhhH
Q 012002 258 VL-FKTLGFG-GSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKDHSEDLHTGFA 335 (473)
Q Consensus 258 ~~-~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (473)
.+ .+.+|++ ..+.+.......+..+++.++.+++.||+++|+..........+....+..... ....
T Consensus 231 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~ 299 (352)
T PF07690_consen 231 LYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRRRLLIAILLLILGALGLLLLPF-----------SSSP 299 (352)
T ss_dssp HHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCSHH-----------HCHH
T ss_pred hhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHH-----------hhhH
Confidence 87 4668888 688888899999999999999999999999988777666655555554444321 1112
Q ss_pred HHHHHHHHHHHHhhhccccccccccccccccccchhhhHHHHHHHHHHHHHHHH
Q 012002 336 VLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIA 389 (473)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 389 (473)
........+.+. ......+....+..|..|++.+|++.|+.+...++++.++|
T Consensus 300 ~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP 352 (352)
T PF07690_consen 300 VWLIIALFLIGF-GFGIVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP 352 (352)
T ss_dssp HHHHHHHHHHHH-HHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence 222222222222 33333456677888999999999999999999999998886
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-32 Score=260.16 Aligned_cols=379 Identities=14% Similarity=0.052 Sum_probs=247.9
Q ss_pred cCCCCCcccCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHh----hhHHHHHHHHHHH
Q 012002 18 QGDDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVAA----QNLAMLIVGRILL 93 (473)
Q Consensus 18 ~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~l~~i~~~~~~~~----~~~~~l~~~r~l~ 93 (473)
.|.+++ +|+++++.+++.+++.++..+++++.|+++||+|||+++..+.++.+++.+++++. ++++.+.+.|++.
T Consensus 50 ~p~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~ 128 (438)
T TIGR00712 50 MPYLVE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVMLLMGFVPWATSSIAIMFVLLFLN 128 (438)
T ss_pred hHHHHH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHHHHHHhccccccchHHHHHHHHHHH
Confidence 345555 49999999999999999999999999999999999999999999999999887764 4677888999999
Q ss_pred hhhhhhhhhhhhHHHhhcCCCCCchhhHHHHHHHHHHHHHHHHHHhhhccccCCccchHHHHHhhhHHHHHHHHH-hhcc
Q 012002 94 GCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVG-SLLV 172 (473)
Q Consensus 94 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~-~~~~ 172 (473)
|++.+..++.....+.|++|+++|++++++.+.+.++|..+++.+.... ...+.+||+.|++.+++.++..+. .+++
T Consensus 129 g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~--~~~~~~w~~~f~~~~~~~~i~~~~~~~~~ 206 (438)
T TIGR00712 129 GWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLG--MAWFNDWHAALYFPAICAIIVALFAFAMM 206 (438)
T ss_pred HHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHH--HHHhhhhHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999988773221 222368999999998888776554 5567
Q ss_pred cCChhhHHhhCChHHHHHHHHHHhCCCCchHHHHHHHHHHhhhhhcccc-hHHhhcccCchhHHHHHHHHHHhhcchhHH
Q 012002 173 TDTPNSLIERGRFEEGKAVLRKIRGTDKIEPEFLELVEASRIAKEVKHP-FRNLLKRRNRPQLVIAVALQIFQQCTGINA 251 (473)
Q Consensus 173 ~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (473)
||+|+....+ +.++. ..+...+. . ++.+++.+.++. .+..+|++. ++...+..++.....+.
T Consensus 207 ~~~~~~~~~~-~~~~~-------~~~~~~~~--~---~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 269 (438)
T TIGR00712 207 RDTPQSCGLP-PIEEY-------RNDYPDDY--N---EKAEQELTAKEIFMQYVLPNKL----LWYIAIANVFVYLLRYG 269 (438)
T ss_pred cCCHHhcCCC-Cchhc-------cccccccc--c---cccccccchHHHHHHHHccCch----HHHHHHHHHHHHHHHHH
Confidence 8876432100 00000 00000000 0 000000000011 112344444 44444444444455566
Q ss_pred HHHhHHHHHHH-cCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHhHHhHHHHHHHHHHHHHHhhhhccCCccc
Q 012002 252 IMFYAPVLFKT-LGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKDHSEDL 330 (473)
Q Consensus 252 ~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (473)
...|.|.++++ .|+++.+++....+..+.++++.++.+++.||+++++....+.....+.......... .
T Consensus 270 ~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~---~------ 340 (438)
T TIGR00712 270 VLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKGNRGATGVFFMTLVTIAVIVYWM---N------ 340 (438)
T ss_pred HHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHh---c------
Confidence 77888988876 7999999999999999999999999999999996543222222222111111111100 0
Q ss_pred chhhHHHHHHHHHHHHHhhhccccccccccccccccccchhhhHHHHHHHHHHHH-HHHHHHHHHHhhhhhhhHHHHHHH
Q 012002 331 HTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFT-FVIAQAFLSMLCHFKFGIFLFFSG 409 (473)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 409 (473)
+....+.......... ....+..........|.+|++.|+++.|+.+...++++ .++|.+.|.+.|+.++...+....
T Consensus 341 ~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~g~~~~~~~~~ 419 (438)
T TIGR00712 341 PAGNPLVDMICMIVIG-FLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMI 419 (438)
T ss_pred CCCchHHHHHHHHHHH-HHHccHHHHHHHHHHHhcChhheeeehhhhchHHHhhhhhhcchhHHHHHHhccchHHHHHHH
Confidence 1111111111111111 11111111212345689999999999999999988875 678999999999888766554443
Q ss_pred H-HHHHHHHHHhhccCCC
Q 012002 410 W-VLIMSCFVFFLLPETK 426 (473)
Q Consensus 410 ~-~~~~~~~~~~~~~~~~ 426 (473)
. .++..+...+..+|.|
T Consensus 420 ~~~~~~~~~~~~~~~~~~ 437 (438)
T TIGR00712 420 GGSILAVILLIVVMIGEK 437 (438)
T ss_pred HHHHHHHHHHHHHHhhcc
Confidence 3 3344444444555543
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-31 Score=251.06 Aligned_cols=357 Identities=14% Similarity=0.150 Sum_probs=242.3
Q ss_pred cccCCCCCcccCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhh
Q 012002 16 TQQGDDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVAAQNLAMLIVGRILLGC 95 (473)
Q Consensus 16 ~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~l~~i~~~~~~~~~~~~~l~~~r~l~G~ 95 (473)
+..|++.+++|+|+.+.+++.+.+.++..++.+++|+++||+|||+++..+.++.+++.+++.++++++.+++.|+++|+
T Consensus 12 p~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~ 91 (377)
T PRK11102 12 PALPVIAADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQTIDQLIYMRFLHGL 91 (377)
T ss_pred ccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHH
Confidence 44556777889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhhHHHhhcCCCCCchhhHHHHHHHHHHHHHHHHHHhhhccccCCccchHHHHHhhhHHHHHHHHH-hhcccC
Q 012002 96 GVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVG-SLLVTD 174 (473)
Q Consensus 96 ~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~-~~~~~e 174 (473)
+.+...+...+++.|++|+++|++++++.+.+..+|..++|.++ ..+.+..+||+.|++.+++.++..++ .+++||
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (377)
T PRK11102 92 AAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIG---GWLLVWFSWHAIFWVLALAAILAAALVFFFIPE 168 (377)
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHcChHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 99999999999999999999999999999999999999999994 44455678999999988877766555 455676
Q ss_pred ChhhHHhhCChHHHHHHHHHHhCCCCchHHHHHHHHHHhhhhhcccchHHhhcccCchhHHHHHHHHHHhhcchhHHHHH
Q 012002 175 TPNSLIERGRFEEGKAVLRKIRGTDKIEPEFLELVEASRIAKEVKHPFRNLLKRRNRPQLVIAVALQIFQQCTGINAIMF 254 (473)
Q Consensus 175 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (473)
+++.. ++ ++ .+ .++...++++.++++. .+...+..++.......+..
T Consensus 169 ~~~~~---~~-~~-------------~~------------~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~ 215 (377)
T PRK11102 169 TLPKE---RR-QP-------------FH------------LRTTIRNFASLFRHKR----VLGYMLASGFSFAGMFSFLT 215 (377)
T ss_pred cCccc---cc-CC-------------CC------------hHHHHHHHHHHHcChH----HHHHHHHHHHHHHHHHHHHH
Confidence 54210 00 00 00 0000112334555543 33333333333444455555
Q ss_pred hHHHHH-HHcCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHhHHhHHHHHHHHHHHHHHhhhhccCCcccchh
Q 012002 255 YAPVLF-KTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKDHSEDLHTG 333 (473)
Q Consensus 255 ~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (473)
+.|.++ +..|+++.+.+.......++.+++.++.+++.||++||+.+..+.....+....+..... ...
T Consensus 216 ~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~----------~~~ 285 (377)
T PRK11102 216 AGPFVYIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRVGALNMLRFGLWIQFIMGIWLVVSAL----------LDL 285 (377)
T ss_pred cCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHH----------Hhh
Confidence 656555 458999999999999999999999999999999999999888777654443333222210 111
Q ss_pred hHHHHHHHHHHHHHhhhccccccccccccccccccchhhhHHHHHHHHH-HHHHHHHHHHHHHhhhhhhhHHHHHHHHHH
Q 012002 334 FAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNL-LFTFVIAQAFLSMLCHFKFGIFLFFSGWVL 412 (473)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (473)
..+........+....... .+....+..|..| +.++++.++.+.... ++..+++.+.+ ..... ....+...+++.
T Consensus 286 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~~~g~~~~~-~~~~~-~~~~~~~~~~~~ 361 (377)
T PRK11102 286 GFWALVVGVAAFVGCVSMI-SSNAMAVILDEFP-HMAGTASSLAGTLRFGIGAIVGALLSL-APFTS-AWPMVWSMAFCS 361 (377)
T ss_pred hHHHHHHHHHHHHHHHHHh-hHHHHHHHhcccc-ccchHHHHHHHHHHHHHHHHHHHHHHh-ccCCC-hHHHHHHHHHHH
Confidence 1122222222222222211 1222344566666 788999998877655 44444444433 22222 222333333444
Q ss_pred HHHHHHHhhc
Q 012002 413 IMSCFVFFLL 422 (473)
Q Consensus 413 ~~~~~~~~~~ 422 (473)
+.+++.+++.
T Consensus 362 ~~~~~~~~~~ 371 (377)
T PRK11102 362 ILSILFYLYA 371 (377)
T ss_pred HHHHHHHHHh
Confidence 4444444443
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-31 Score=252.74 Aligned_cols=341 Identities=19% Similarity=0.243 Sum_probs=236.9
Q ss_pred CCCchhHHHHHH-----HHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHH--------HHHHHHHHH
Q 012002 27 YDNQGLQLFTSS-----LYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVAAQNLA--------MLIVGRILL 93 (473)
Q Consensus 27 ~s~~~~~~~~s~-----~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~l~~i~~~~~~~~~~~~--------~l~~~r~l~ 93 (473)
.++++.+.+.+. .+++..+++++.|+++||+|||+++..+.++..++.++++++++++ .++++|+++
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~ 106 (394)
T TIGR00883 27 SGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLLPSYATIGIWAPILLLLARLIQ 106 (394)
T ss_pred CCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhCCChhhhHHHHHHHHHHHHHHH
Confidence 456666665554 3333457889999999999999999999999999999999998875 478899999
Q ss_pred hhhhhhhhhhhhHHHhhcCCCCCchhhHHHHHHHHHHHHHHHHHHhhhcccc-----CCccchHHHHHhhhHHHHHHHHH
Q 012002 94 GCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTSHI-----KSQWGWRISLGLAGIPAALLTVG 168 (473)
Q Consensus 94 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~-----~~~~~wr~~f~~~~~~~~~~~~~ 168 (473)
|++.+...+....++.|++++++|++..++.+.+..+|.++++.++...... .+.++||+.|++.+++.++..+.
T Consensus 107 G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~ 186 (394)
T TIGR00883 107 GFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALLEWGWRIPFLVSAVLVLIGLYL 186 (394)
T ss_pred HhhccccccccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhhccchHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999875543321 13578999999887776665555
Q ss_pred hhcccCChhhHHhhCChHHHHHHHHHHhCCCCchHHHHHHHHHHhhhhhcccchHHhhcccCchhHHHHHHHHHHhhcch
Q 012002 169 SLLVTDTPNSLIERGRFEEGKAVLRKIRGTDKIEPEFLELVEASRIAKEVKHPFRNLLKRRNRPQLVIAVALQIFQQCTG 248 (473)
Q Consensus 169 ~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (473)
....+|+|++..++ +++++.+.+.++.++++++ + ++......+.....
T Consensus 187 ~~~~~~~~~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~ 234 (394)
T TIGR00883 187 RRNLEETPVFEKAQ------------------------------EKHKKKRGPIRETLTKHRK-P-FLLGLGLVIATTTT 234 (394)
T ss_pred HHhcCCChhHHHHH------------------------------hccccccCCHHHHHHhchH-H-HHHHHHHHHHHHHH
Confidence 55567765321110 0011112344555554331 1 33333444444555
Q ss_pred hHHHHHhHHHHH-HHcCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHhHHhHHHHHHHHHHHHHHhhhhccCC
Q 012002 249 INAIMFYAPVLF-KTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKDHS 327 (473)
Q Consensus 249 ~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (473)
......+.|.+. +++|.+..+.+.......++..++.++.+++.||++||+.+.....+..+..........
T Consensus 235 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~------- 307 (394)
T TIGR00883 235 FYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALL------- 307 (394)
T ss_pred HHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHh-------
Confidence 666777888887 458899999998889999999999999999999999999877554444333221111110
Q ss_pred cccchhhHHHHHHHHHHHHHhhhccccccccccccccccccchhhhHHHHH-HHHHHHHHHHHHHHHHHhhhhh-hhHHH
Q 012002 328 EDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTV-CVNLLFTFVIAQAFLSMLCHFK-FGIFL 405 (473)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 405 (473)
.....+...........+.. ...+....+..|.+|++.|+++.++.. ....++..++|.+.|.+.++.+ +....
T Consensus 308 ---~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~ 383 (394)
T TIGR00883 308 ---DSGSFTLFFFLVLGLALIGG-MYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIG 383 (394)
T ss_pred ---cCCchHHHHHHHHHHHHHHH-HHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcCcchhHH
Confidence 11112222222222222222 223455677789999999999999854 4456788899999999999877 44444
Q ss_pred HHHHH
Q 012002 406 FFSGW 410 (473)
Q Consensus 406 ~~~~~ 410 (473)
....+
T Consensus 384 ~~~~~ 388 (394)
T TIGR00883 384 YYLAA 388 (394)
T ss_pred HHHHH
Confidence 44333
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-32 Score=239.51 Aligned_cols=356 Identities=16% Similarity=0.153 Sum_probs=274.4
Q ss_pred hhccccCCCCCcccCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHH---HHHHH
Q 012002 13 YRRTQQGDDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVAAQNLA---MLIVG 89 (473)
Q Consensus 13 ~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~l~~i~~~~~~~~~~~~---~l~~~ 89 (473)
..+++.+.+++++|+|++|.+++.++..+...+..++.|.+.||+|.|++..++.++..+-.+..+++.+++ +++++
T Consensus 32 l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~IP~~~~~~a~~~~~~~~ll~~ 111 (417)
T COG2223 32 LFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAVTYPSTWQLLVI 111 (417)
T ss_pred HHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHHHHHHHHHHccCCchHHHHHH
Confidence 346677889999999999999999999999999999999999999999999999999999999999986555 99999
Q ss_pred HHHHhhhhhhhhhhhhHHHhhcCCCCCchhhHHHHHHHHHHHHHHHHHHhhhccccCCccc---hHHHHHhhhHHHHHHH
Q 012002 90 RILLGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTSHIKSQWG---WRISLGLAGIPAALLT 166 (473)
Q Consensus 90 r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~---wr~~f~~~~~~~~~~~ 166 (473)
+.+.|++.+ .+.+..+++++|+||+++|.++|+.. ..++|..+...+ ...+....+ ||....+..+..++..
T Consensus 112 gll~G~~Ga-sFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~---~P~v~~~~g~~~w~~~~~i~~~~l~v~~ 186 (417)
T COG2223 112 GLLLGLAGA-SFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLV---APLVAVAFGFLAWRNVAGIYVVALAIAA 186 (417)
T ss_pred HHHHhcccc-eehcccccccccCChhhhhHHHHHhc-cccccHHHHHHH---HHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 999999866 88899999999999999999999998 788888877777 333344456 9999999888888866
Q ss_pred HH-hhcccCChhhHHhhCChHHHHHHHHHHhCCCCchHHHHHHHHHHhhhhhcc-cchHHhhcccCchhHHHHHHHHHHh
Q 012002 167 VG-SLLVTDTPNSLIERGRFEEGKAVLRKIRGTDKIEPEFLELVEASRIAKEVK-HPFRNLLKRRNRPQLVIAVALQIFQ 244 (473)
Q Consensus 167 ~~-~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (473)
+. ++.+.|.|.... ..++.. .+++..+++++ .|.+++.++.
T Consensus 187 v~~~~~~~d~p~~r~---------------------------------~~~~~~~~~~~~v~~~~~----~W~lsllY~~ 229 (417)
T COG2223 187 VLAWLGMNDVPEHRA---------------------------------SVKPQLPAQLKAVFSNKD----TWLLSLLYFA 229 (417)
T ss_pred HHHHHHhCCChhhhc---------------------------------cccccchhHHHHHhcCcc----hHHHHHHHHH
Confidence 66 445666652200 001111 34555666666 8888888999
Q ss_pred hcchhHHHHHhHHHHHHH-cCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHhHHhHHHHHHHHHHHHHHhhhh
Q 012002 245 QCTGINAIMFYAPVLFKT-LGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKV 323 (473)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (473)
.+.++..+..+.|.++++ +|.++.+++.......+.+.+.+.++|+++||+|.+|.+...+..+.++..+........
T Consensus 230 tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~~~~l~~~~~~~- 308 (417)
T COG2223 230 TFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVGMALAAALLSLFLTGF- 308 (417)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccchhHHHHHHHHHHHHHHHHHcccccc-
Confidence 999999999999988865 999999999999999999999999999999999999999998888888887777642100
Q ss_pred ccCCcccchhhHHHHHHHHHHHHHhhhccccccccccccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhh-hh
Q 012002 324 KDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHFK-FG 402 (473)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 402 (473)
. .................+.+.+.. ..+.++...+|+ +.|.+.|+...++.+|+...|...+...+..+ +.
T Consensus 309 ---~---~~~~~~~~~~~~l~l~~~~G~GnG-svfk~Ip~if~~-~~G~v~G~vga~G~lGGf~lp~~~g~~~~~tg~~~ 380 (417)
T COG2223 309 ---G---HGGSFVVFVAVFLALFVFAGLGNG-SVFKMIPVIFPK-ETGAVTGIVGAIGGLGGFFLPLAFGVSLDLTGSYT 380 (417)
T ss_pred ---c---cCcchHHHHHHHHHHHHHhccCcc-hheeechHHHHh-hhhHHHHHHHHhccccccchhHHHHHHHHhcccHH
Confidence 0 011222222223333333333333 445666677765 56889999999999999999999999999887 44
Q ss_pred HHHHHHHHHHHHHHHHH
Q 012002 403 IFLFFSGWVLIMSCFVF 419 (473)
Q Consensus 403 ~~~~~~~~~~~~~~~~~ 419 (473)
..+.+.....+.+.+..
T Consensus 381 ~~f~~~~~~~~~a~v~~ 397 (417)
T COG2223 381 GAFMLLLAFYLVALVLT 397 (417)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444444444444433
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-31 Score=250.97 Aligned_cols=351 Identities=12% Similarity=0.089 Sum_probs=241.1
Q ss_pred HhhhhccccCCCCCcccCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 012002 10 PVVYRRTQQGDDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVAAQNLAMLIVG 89 (473)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~l~~i~~~~~~~~~~~~~l~~~ 89 (473)
+.++..+..|++.+++|.+.++.++..+++.+++.++++++|+++||+|||++++.+.+++++++++++++++++.++++
T Consensus 31 ~~~~~~p~l~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~ 110 (413)
T PRK15403 31 TTDLIQPGIINVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLFTTSMTQFLIA 110 (413)
T ss_pred HHHhhccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 44445555667888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhhhhhhhhHHHhhcCCCCCchhhHHHHHHHHHHHHHHHHHHhhhccccCCccchHHHHHhhhHHHHHHHHH-
Q 012002 90 RILLGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVG- 168 (473)
Q Consensus 90 r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~- 168 (473)
|+++|++.+...+....++.|++|+++|++++++...+..+|..++|.++.. +.++.|||+.|++.++..++..+.
T Consensus 111 r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~---l~~~~gw~~~f~~~~~~~~i~~~~~ 187 (413)
T PRK15403 111 RFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAA---LMHFVHWKVLFAIIAVMGLIAFVGL 187 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhcCHHHHHHHHHHHHHHHHHHH
Confidence 9999999987777888889999999999999999999999999999999544 445579999999999887776655
Q ss_pred hhcccCChhhHHhhCChHHHHHHHHHHhCCCCchHHHHHHHHHHhhhhhcccchHHhhcccCchhHHHHHHHHHHhhcch
Q 012002 169 SLLVTDTPNSLIERGRFEEGKAVLRKIRGTDKIEPEFLELVEASRIAKEVKHPFRNLLKRRNRPQLVIAVALQIFQQCTG 248 (473)
Q Consensus 169 ~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (473)
++++||+++. +++..+ .+...+++++++|++. ++...+..++....
T Consensus 188 ~~~lp~~~~~---~~~~~~---------------------------~~~~~~~~~~ll~~~~----~~~~~l~~~~~~~~ 233 (413)
T PRK15403 188 LLAMPETVKR---GAVPFS---------------------------AKSVLRDFRNVFRNRL----FLTGAATLSLSYIP 233 (413)
T ss_pred HHhCCCCccc---cCCCCC---------------------------hHHHHHHHHHHHcCHH----HHHHHHHHHHHHHH
Confidence 4457876421 000000 0001123445566554 55444444555555
Q ss_pred hHHHHHhHHHHHHH-cCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHhHHhHHHHHHHHHHHHHHhhhhccCC
Q 012002 249 INAIMFYAPVLFKT-LGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKDHS 327 (473)
Q Consensus 249 ~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (473)
...+..+.|.++++ .|+++.+.++.......+.+++..+.+++.++..+++..........++..++......
T Consensus 234 ~~~~~~~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ig~~l~~~~~~~------ 307 (413)
T PRK15403 234 MMSWVAVSPVILIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDPTEPRFIWRAVPIQLVGLALLIVGNLL------ 307 (413)
T ss_pred HHHHHHhChHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHH------
Confidence 56666777887766 69999999998888888888888888877655544444333322233333222221100
Q ss_pred cccchhhHHHHHHHHHHHHHhhhccccccccccccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHH
Q 012002 328 EDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHFKFGIFLFF 407 (473)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (473)
.....+......+++..+..... |...... ..-....+|++.++.+.....+...++...+++.++.....+...
T Consensus 308 ---~~~~~~~~~~~~~l~~~G~~~~~-p~~~~~a-l~~~~~~~G~a~a~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 382 (413)
T PRK15403 308 ---WPHVWLWSVLGTSLYAFGIGLIF-PTLFRFT-LFSNNLPKGTVSASLNMVILMVMAVSVEIGRWLWFNGGRLPFHLL 382 (413)
T ss_pred ---ccccHHHHHHHHHHHHHHHHHHh-HHHHHHH-hccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHH
Confidence 00111111222222222222222 2222111 111222479999999999988888999988888776443333333
Q ss_pred H
Q 012002 408 S 408 (473)
Q Consensus 408 ~ 408 (473)
.
T Consensus 383 ~ 383 (413)
T PRK15403 383 A 383 (413)
T ss_pred H
Confidence 3
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-31 Score=247.60 Aligned_cols=329 Identities=15% Similarity=0.162 Sum_probs=227.9
Q ss_pred cccCCCCCcccCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhh
Q 012002 16 TQQGDDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVAAQNLAMLIVGRILLGC 95 (473)
Q Consensus 16 ~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~l~~i~~~~~~~~~~~~~l~~~r~l~G~ 95 (473)
...|.+.+++|.++.+.++..+.+.++..+++++.|+++||+|||++++.+.++.+++.+++.++++++.+++.|+++|+
T Consensus 24 ~~lp~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~ 103 (392)
T PRK10473 24 VGLPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLAETSSLFLAGRFLQGI 103 (392)
T ss_pred hhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHh
Confidence 34567788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhhHHHhhcCCCCCchhhHHHHHHHHHHHHHHHHHHhhhccccCCccchHHHHHhhhHHHHHHHHH-hhcccC
Q 012002 96 GVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVG-SLLVTD 174 (473)
Q Consensus 96 ~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~-~~~~~e 174 (473)
+.+...+...+++.|++|+++|+++.++.+....+|..++|.++.. +.+..+||+.|++.++..++..++ .+++||
T Consensus 104 ~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~---l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 180 (392)
T PRK10473 104 GAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHL---IMLKFPWQSLFYTMAAMGILVLLLSLFILKE 180 (392)
T ss_pred hhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhCcChHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 9999999999999999999999999999999999999999998443 344578999999988877766655 445666
Q ss_pred ChhhHHhhCChHHHHHHHHHHhCCCCchHHHHHHHHHHhhhhhcccchHHhhcccCchhHHHHHHHHHHhhcchhHHHHH
Q 012002 175 TPNSLIERGRFEEGKAVLRKIRGTDKIEPEFLELVEASRIAKEVKHPFRNLLKRRNRPQLVIAVALQIFQQCTGINAIMF 254 (473)
Q Consensus 175 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (473)
+++.. + + ++ . +..+..++.++++... ...+...+.......+..
T Consensus 181 ~~~~~--~-~-~~--------------~--------------~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 224 (392)
T PRK10473 181 TRPAR--A-P-AA--------------S--------------SKPRENSESLLNRFFL----SRLVITTLSVTVILTFVN 224 (392)
T ss_pred CCCcc--c-C-Cc--------------c--------------chHHHHHHHHhCHHHH----HHHHHHHHHHHHHHHHHH
Confidence 54210 0 0 00 0 0000112233333311 111111111222233444
Q ss_pred hHHHHH-HHcCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHhHHhHHHHHHHHHHHHHHhhhhccCCcccchh
Q 012002 255 YAPVLF-KTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKDHSEDLHTG 333 (473)
Q Consensus 255 ~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (473)
+.|.+. +++|+++.+.+...+..+++.+++.++.+++.||++||+.+..+.....++...+.... ..
T Consensus 225 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~------------~~ 292 (392)
T PRK10473 225 TSPVLLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIFKPRTLMLTSQVLFLAAGITLALSP------------SH 292 (392)
T ss_pred hCHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHH------------HH
Confidence 556555 45899988889888899999999999999999999999998888776666655554431 11
Q ss_pred hHHHHHHHHHHHHHhhhccccccccccccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhH
Q 012002 334 FAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHFKFGI 403 (473)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (473)
. ...........+...+.. . ....+..|.+.|+ |.......++..+++.+.+.+.+..++..
T Consensus 293 ~--~~~~~~~l~~~g~~~~~~-~--~~~~~~~~~~~~~---g~~~~~~~~~~~~g~~~~~~l~~~~g~~~ 354 (392)
T PRK10473 293 A--VSLFGITLICAGFSVGFG-V--AMSQALGPFSLRA---GVASSTLGIAQVCGSSLWIWLAAVLGISA 354 (392)
T ss_pred H--HHHHHHHHHHHHHHHHhH-H--HHHHHhccCcccc---cHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 1 111111221222222211 1 2223444544443 33334445566666777777776666543
|
|
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-31 Score=246.99 Aligned_cols=272 Identities=18% Similarity=0.205 Sum_probs=218.6
Q ss_pred CCCCCcccCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhh
Q 012002 19 GDDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVAAQNLAMLIVGRILLGCGVG 98 (473)
Q Consensus 19 ~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~l~~i~~~~~~~~~~~~~l~~~r~l~G~~~~ 98 (473)
..+.+|.|....+.+.+.++++++|+++.+++|.|.||++..+.+....+++++..++.....|++.+++.|++.|+.++
T Consensus 70 ~g~~edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~~~s~~~~ialr~llGl~es 149 (495)
T KOG2533|consen 70 SGLKEDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAAVHSFPGLIALRFLLGLFES 149 (495)
T ss_pred cCCccccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc
Confidence 44789999999999999999999999999999999999999999999999999999999899999999999999999999
Q ss_pred hhhhhhhHHHhhcCCCCCchhhHHHHHHHHHHHHHHHHHHhhhcccc---CCccchHHHHHhhhHHHHHHHHH-hhcccC
Q 012002 99 FANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTSHI---KSQWGWRISLGLAGIPAALLTVG-SLLVTD 174 (473)
Q Consensus 99 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~---~~~~~wr~~f~~~~~~~~~~~~~-~~~~~e 174 (473)
..+|....+++.|+.++||++.++++.+..++|.++|++++..+..+ ....||||.|++.++++++..++ ++++|+
T Consensus 150 ~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp~ 229 (495)
T KOG2533|consen 150 GGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVFFFLPD 229 (495)
T ss_pred ccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEEEEecC
Confidence 99999999999999999999999999999999999999997764221 22468999999999999988877 567999
Q ss_pred ChhhHHhhCChHHHHHHHHHHhCCCCchHHHHHHHHHHhhhhhcccchHHhhcccCchhHHHHHHHHHHhhcchhHHHHH
Q 012002 175 TPNSLIERGRFEEGKAVLRKIRGTDKIEPEFLELVEASRIAKEVKHPFRNLLKRRNRPQLVIAVALQIFQQCTGINAIMF 254 (473)
Q Consensus 175 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (473)
.|....-.++.|+. -..++.+..+... ..++.+...+++.++++. +|.+.++.++.....+++.+
T Consensus 230 ~P~~~~fl~~~ek~-~~~~~~~~~~~~~----------~~~~~~~~~~~~a~~dp~----vw~~~l~~~~~~lv~~~~~~ 294 (495)
T KOG2533|consen 230 NPSKAWFLTDEEKE-LVVERLRESPSGG----------IENKFKWKGFKEALKDPG----VWPFSLCYFFLKLVNYGFSY 294 (495)
T ss_pred ChhhccccchHHHH-HHHHHHHhccCCC----------cccccCHHHHHHHHhchh----HHHHHHHHHHHhhccccHHH
Confidence 98622111111110 0011111000000 000122345666677776 88888999999999999999
Q ss_pred hHHHHHHH-cCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhc----CcchhHhHHh
Q 012002 255 YAPVLFKT-LGFGGSASLYSTVITGAVNVLSTLVSIYSVDKV----GRRMLLLEAG 305 (473)
Q Consensus 255 ~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~----~~~~~~~~~~ 305 (473)
|+|.++++ .|++..++..+.++..++++++.+++|+++||+ .+|.......
T Consensus 295 ~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~~ 350 (495)
T KOG2533|consen 295 WLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFIVFL 350 (495)
T ss_pred HHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 99999988 679999999999999999999999999999994 4444444333
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-30 Score=245.55 Aligned_cols=356 Identities=11% Similarity=0.060 Sum_probs=242.2
Q ss_pred HhhhhccccCCCCCcccCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHH---HHhhhHHHH
Q 012002 10 PVVYRRTQQGDDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFN---VAAQNLAML 86 (473)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~l~~i~~~~~---~~~~~~~~l 86 (473)
.+...+...|++++++|+|+.+.|++.+.+.+++.+++++.|++.||+|||+++..+..+++++++++ .++++++.+
T Consensus 41 ~~~~~~~~~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~~~~l~~~~~~a~~~~~l 120 (438)
T PRK10133 41 ANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLF 120 (438)
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhcCCHHHH
Confidence 34455666788999999999999999999999999999999999999999999999999999999886 467899999
Q ss_pred HHHHHHHhhhhhhhhhhhhHHHhhcCCCCCchhhHHHHHHHHHHHHHHHHHHhhhcc-cc------------C-Cc----
Q 012002 87 IVGRILLGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTS-HI------------K-SQ---- 148 (473)
Q Consensus 87 ~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~-~~------------~-~~---- 148 (473)
+++|+++|+|.|...+..++++.|+.++++|.+.+++.+..+.+|..+++.++.... .. . +.
T Consensus 121 l~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~~~~~~~~~~~~~~~l~~~~~~~w 200 (438)
T PRK10133 121 LVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMTPEQLSAY 200 (438)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchhhhhccChhhHHHH
Confidence 999999999999999999999999877777777899999999999999998865322 00 0 00
Q ss_pred -----cchHHHHHhhhHH-HHHHHHH-hhcccCChhhHHhhCChHHHHHHHHHHhCCCCchHHHHHHHHHHhhhhhcccc
Q 012002 149 -----WGWRISLGLAGIP-AALLTVG-SLLVTDTPNSLIERGRFEEGKAVLRKIRGTDKIEPEFLELVEASRIAKEVKHP 221 (473)
Q Consensus 149 -----~~wr~~f~~~~~~-~~~~~~~-~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (473)
.+||++|+....+ .++..++ ....||.+.. +.+ + ++..+...+
T Consensus 201 ~~~~~~~w~~~f~~~~~v~~~~~~~~~~~~~p~~~~~---~~~-~--------------------------~~~~~~~~~ 250 (438)
T PRK10133 201 KHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSD---NHS-D--------------------------AKQGSFSAS 250 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcc---ccc-c--------------------------ccccchhhh
Confidence 2577777654433 3232222 2234442210 000 0 000001123
Q ss_pred hHHhhcccCchhHHHHHHHHHHhhcchhHHHHHhHHHH-HHH-cCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCcch
Q 012002 222 FRNLLKRRNRPQLVIAVALQIFQQCTGINAIMFYAPVL-FKT-LGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRM 299 (473)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~ 299 (473)
.+++++++..+ ...+..++..........|.+.+ .++ +|+++.+++.......++.+++++..+++.||+++|+
T Consensus 251 ~~~ll~~~~~~----~~~l~~~~~~~~~~~~~~~~~~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~ 326 (438)
T PRK10133 251 LSRLARIRHWR----WAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHK 326 (438)
T ss_pred HHHHHhCchHH----HHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH
Confidence 34566666532 22233333334444455566655 444 7999999999999999999999999999999999999
Q ss_pred hHhHHhHHHHHHHHHHHHHHhhhhccCCcccchhhHHHHHHHHHHHHHhhhccccccccccccccccccchhhhHHHHHH
Q 012002 300 LLLEAGIQMFLSQTVIAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVC 379 (473)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 379 (473)
.+..+..+..+.+.+.... +.. . ....+.+ .+.+.....|..++...+..|++ .+.+.++..
T Consensus 327 ~l~~~~~~~~~~~~~~~~~------------~~~--~-~~~~~~l-~glg~~~i~P~~~s~a~~~~~~~-~~~as~l~~- 388 (438)
T PRK10133 327 VLAAYALIAMALCLISAFA------------GGH--V-GLIALTL-CSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV- 388 (438)
T ss_pred HHHHHHHHHHHHHHHHHHc------------CCh--H-HHHHHHH-HHHHHHHHHHHHHHHHHcccchh-hccchhHHh-
Confidence 8887765555444333221 111 1 1111222 22222333356666667776654 567777776
Q ss_pred HHHHHHHHHHHHHHHHhhhhh-hhHHHHHHHHHHHHHHH
Q 012002 380 VNLLFTFVIAQAFLSMLCHFK-FGIFLFFSGWVLIMSCF 417 (473)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 417 (473)
...+++.++|++.|.+.+..+ ....+++..++.+..+.
T Consensus 389 ~~~~g~~~~~~i~G~l~~~~g~~~~~~~v~~~~~~~~~~ 427 (438)
T PRK10133 389 MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFI 427 (438)
T ss_pred HHhccchHHHHHHHHHHHhccchHHHHHHHHHHHHHHHH
Confidence 455788899999999988876 44555444444443333
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-30 Score=242.32 Aligned_cols=328 Identities=22% Similarity=0.280 Sum_probs=268.0
Q ss_pred cccCCCCCcccCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhh
Q 012002 16 TQQGDDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVAAQNLAMLIVGRILLGC 95 (473)
Q Consensus 16 ~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~l~~i~~~~~~~~~~~~~l~~~r~l~G~ 95 (473)
...|...+++|.+..+.+++.+...++..+++++.|+++||+|||+.+..+..+..++.+++.++++++.+++.|++.|+
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~ 99 (352)
T cd06174 20 PALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGL 99 (352)
T ss_pred hhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHc
Confidence 33445566779999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhhHHHhhcCCCCCchhhHHHHHHHHHHHHHHHHHHhhhccccCCccchHHHHHhhhHHHHHHHHHhhcccCC
Q 012002 96 GVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVGSLLVTDT 175 (473)
Q Consensus 96 ~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~ 175 (473)
+.+...+...+++.|++|+++|++.+++.+....+|..+++.+ ...+.+..+||+.+++.+++.++..+...+++
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 174 (352)
T cd06174 100 GGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLL---GGLLAESLGWRWLFLILAILGLLLALLLLFLL-- 174 (352)
T ss_pred ccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHH---HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 9999999999999999999999999999999999999999999 44455556799999998888777666544332
Q ss_pred hhhHHhhCChHHHHHHHHHHhCCCCchHHHHHHHHHHhhhhhcccchHHhhcccCchhHHHHHHHHHHhhcchhHHHHHh
Q 012002 176 PNSLIERGRFEEGKAVLRKIRGTDKIEPEFLELVEASRIAKEVKHPFRNLLKRRNRPQLVIAVALQIFQQCTGINAIMFY 255 (473)
Q Consensus 176 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (473)
+.++...+..++..........+
T Consensus 175 ---------------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~ 197 (352)
T cd06174 175 ---------------------------------------------------------RLLLLLALAFFLLSFGYYGLLTY 197 (352)
T ss_pred ---------------------------------------------------------HHHHHHHHHHHHHHhHHHHHHHH
Confidence 11445555566666667778888
Q ss_pred HHHHHHH-cCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCcch-hHhHHhHHHHHHHHHHHHHHhhhhccCCcccchh
Q 012002 256 APVLFKT-LGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRM-LLLEAGIQMFLSQTVIAIILGIKVKDHSEDLHTG 333 (473)
Q Consensus 256 ~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (473)
.|.+.++ .|.+..+.+.......++..++.++.+++.||++||+ .+..+.....++....... ++
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~------------~~- 264 (352)
T cd06174 198 LPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALA------------PS- 264 (352)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh------------cc-
Confidence 8888877 4899999999999999999999999999999999999 8887777777776665543 11
Q ss_pred hHHHHHHHHHHHHHhhhccccccccccccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHH
Q 012002 334 FAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHFKFGIFLFFSGWVLI 413 (473)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (473)
.+. ........+.......+....+..|..|+++|++..|+.+....++..+++.+.+.+.+..++...+...++..+
T Consensus 265 -~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~ 342 (352)
T cd06174 265 -LAL-LLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALAL 342 (352)
T ss_pred -HHH-HHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHH
Confidence 222 222333333333344466778889999999999999999999999999999999999988777766666666665
Q ss_pred HHHHHHh
Q 012002 414 MSCFVFF 420 (473)
Q Consensus 414 ~~~~~~~ 420 (473)
.+.+...
T Consensus 343 i~~i~~~ 349 (352)
T cd06174 343 LAALLLL 349 (352)
T ss_pred HHHHHhe
Confidence 5555443
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=4.5e-30 Score=244.47 Aligned_cols=351 Identities=14% Similarity=0.060 Sum_probs=240.3
Q ss_pred ccCCCCCcccCCCch-----hHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 012002 17 QQGDDSNYCKYDNQG-----LQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVAAQNLAMLIVGRI 91 (473)
Q Consensus 17 ~~~~~~~~~~~s~~~-----~~~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~l~~i~~~~~~~~~~~~~l~~~r~ 91 (473)
..|.+.+++|++..+ .|++.+++.++..+++++.|+++||+|||++++.+.++.+++.+++.++++++.+++.|+
T Consensus 36 ~l~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (408)
T PRK09874 36 FLPLYVEQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALGMGIVMVLMGLAQNIWQFLILRA 115 (408)
T ss_pred hHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 344555667888665 489999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhhhhhhhhHHHhhcCCCCCchhhHHHHHHHHHHHHHHHHHHhhhccccCCccchHHHHHhhhHHHHHHHHHh-h
Q 012002 92 LLGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVGS-L 170 (473)
Q Consensus 92 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~-~ 170 (473)
+.|++.+ ..+....++.+++|+++|++++++...+..+|.+++|.++ +.+.+..+||+.|++.+++.++..+.. +
T Consensus 116 ~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (408)
T PRK09874 116 LLGLLGG-FVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAG---GLLADSYGLRPVFFITASVLFLCFLVTLF 191 (408)
T ss_pred HHHHhhh-hHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHH---HHHHHHhCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999865 5677888899999999999999999999999999999994 444556789999999888777666553 4
Q ss_pred cccCChhhHHhhCChHHHHHHHHHHhCCCCchHHHHHHHHHHhhhhhcccchHHhhcccCchhHHHHHHHHHHhhcchhH
Q 012002 171 LVTDTPNSLIERGRFEEGKAVLRKIRGTDKIEPEFLELVEASRIAKEVKHPFRNLLKRRNRPQLVIAVALQIFQQCTGIN 250 (473)
Q Consensus 171 ~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (473)
+++|+++... + ++ + .+ ..+..+.+++++. ........+.......
T Consensus 192 ~~~~~~~~~~---~-~~--------------~---~~-----------~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 236 (408)
T PRK09874 192 CIRENFQPVS---K-KE--------------M---LH-----------MREVVTSLKNPKL---VLSLFVTTLIIQVATG 236 (408)
T ss_pred HhccCccccc---c-hh--------------h---hH-----------HHHHHHhCcCCch---HHHHHHHHHHHHHHHH
Confidence 4555431100 0 00 0 00 0001122333321 1111121222222233
Q ss_pred HHHHhHHHHHHHcCCCCcc----hHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHhHHhHHHHHHHHHHHHHHhhhhccC
Q 012002 251 AIMFYAPVLFKTLGFGGSA----SLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKDH 326 (473)
Q Consensus 251 ~~~~~~~~~~~~~g~~~~~----~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (473)
....+.+.+..+.+.+..+ .+......+++.+++.+..+++.||++||+.+..+.....+..+.....
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~-------- 308 (408)
T PRK09874 237 SIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFV-------- 308 (408)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHh--------
Confidence 3445556665553323222 3445566678888889999999999999999887766555444433321
Q ss_pred CcccchhhHHHHHHHHHHHHHhhhccccccccccccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHH
Q 012002 327 SEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHFKFGIFLF 406 (473)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (473)
+ ..+.......+.+ .......+...++..+..|++.+++.+++.+....+|..++|.+.|.+.+..++...+.
T Consensus 309 ----~--~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g~~~~f~ 381 (408)
T PRK09874 309 ----Q--TPLQLGILRFLLG-AADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANYGFRAVFL 381 (408)
T ss_pred ----c--cHHHHHHHHHHHH-hhhHhhHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhcchhHHHH
Confidence 1 1122222222222 22222234444555677888999999999999999999999999999999888877777
Q ss_pred HHHHHHHHHHHHHhh
Q 012002 407 FSGWVLIMSCFVFFL 421 (473)
Q Consensus 407 ~~~~~~~~~~~~~~~ 421 (473)
..+++.+.+.+..+.
T Consensus 382 ~~~~~~l~~~~~~~~ 396 (408)
T PRK09874 382 VTAGVVLFNAVYSWN 396 (408)
T ss_pred HHHHHHHHHHHHHHH
Confidence 666666555554443
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=8e-30 Score=240.48 Aligned_cols=351 Identities=11% Similarity=0.094 Sum_probs=231.6
Q ss_pred ccccCCCCCcccCCCchhHHHHHHHHH-HHHHHHHHHHHhhhhhhhHHHH-HHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 012002 15 RTQQGDDSNYCKYDNQGLQLFTSSLYL-AGLTATFFASYTTRRLGRRLTM-LIAGIFFIAGVAFNVAAQNLAMLIVGRIL 92 (473)
Q Consensus 15 ~~~~~~~~~~~~~s~~~~~~~~s~~~~-~~~~~~~~~g~l~Dr~Grr~~l-~~~~~l~~i~~~~~~~~~~~~~l~~~r~l 92 (473)
+...+.+.+++|+|.+++|++.+...+ ++.++.+++|+ +||+||||.+ +.+.++.+++..+.+++++++.+++.+.+
T Consensus 36 p~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 114 (393)
T PRK15011 36 PTLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDKRGDRKSLIVFCCLLGVLACTLFAWNRNYFVLLFVGVF 114 (393)
T ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 334455788999999999999876655 66666666666 9999999875 56666677888888899999988776665
Q ss_pred HhhhhhhhhhhhhHHHhhcCCCCCc--hhhHHHHHHHHHHHHHHHHHHhhhccccCCccchHHHHHhhhHHHHHHHHH-h
Q 012002 93 LGCGVGFANQAVPLFLSEIAPTRIR--GGLNILFQLNVTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVG-S 169 (473)
Q Consensus 93 ~G~~~~~~~~~~~~~i~~~~~~~~r--~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~-~ 169 (473)
.|...+...|....+..++.++++| +...++.+.+.++|.+++|++ .+.+.+++|||..|++.++..++..+. +
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i---~~~l~~~~gw~~~f~~~~~~~~~~~~~~~ 191 (393)
T PRK15011 115 LSSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPL---AYALAMGFSFTVMYLSAAVAFIVCGVMVW 191 (393)
T ss_pred HHHHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHH---HHHHHHhcChHHHHHHHHHHHHHHHHHHH
Confidence 5555567788888989998876655 345578889999999999999 444555679999999998877766655 4
Q ss_pred hcccCChhhHHhhCChHHHHHHHHHHhCCCCchHHHHHHHHHHhhhhhcccchHHhhcccCchhHHHHHHHHHHhhcchh
Q 012002 170 LLVTDTPNSLIERGRFEEGKAVLRKIRGTDKIEPEFLELVEASRIAKEVKHPFRNLLKRRNRPQLVIAVALQIFQQCTGI 249 (473)
Q Consensus 170 ~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (473)
+++||.++.. ++ ++ + ..+. ..+++ +..++. ..........+
T Consensus 192 ~~~~~~~~~~---~~-~~----------------------------~-~~~~---~~~~~--~~~~~~-~~~~~~~~~~~ 232 (393)
T PRK15011 192 LFLPSMRKEL---PL-AT----------------------------G-TLEA---PRRNR--RDTLLL-FVICTLMWGTN 232 (393)
T ss_pred hhcCccCCCC---cc-cc----------------------------c-cccc---ccccc--ccHHHH-HHHHHHHHHHH
Confidence 4577764210 00 00 0 0000 00111 111111 12222222334
Q ss_pred HHHHHhHHHHHH-HcCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHhHHhHHHHHHHHHHHHHHhhhhccCCc
Q 012002 250 NAIMFYAPVLFK-TLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKDHSE 328 (473)
Q Consensus 250 ~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (473)
..+..+.|.+++ ++|+++.+.+.+.....+..+++.++.|+++||++||+.+..+.....+........
T Consensus 233 ~~~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~---------- 302 (393)
T PRK15011 233 SLYIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMA---------- 302 (393)
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHH----------
Confidence 455567787775 489998888888887778888999999999999999987766544433332221110
Q ss_pred ccchhhHHHHHHHHHHHHHhhhccccccccccccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHH
Q 012002 329 DLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHFKFGIFLFFS 408 (473)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (473)
+ ..+..+..........+.. .+....+..|..|+ .++++.++.+...++|..+++.+.|.+.+..++...+...
T Consensus 303 --~--~~~~~l~~~~l~~~~~g~~-~~~~~~~~~~~~p~-~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~ 376 (393)
T PRK15011 303 --H--SPAILLGLQLLNAIYIGIL-GGIGMLYFQDLMPG-QAGSATTLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFA 376 (393)
T ss_pred --h--hHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 1 1111111111111111111 11223455788885 5899999999999999999999999999988887777776
Q ss_pred HHHHHHHHHHHhhccC
Q 012002 409 GWVLIMSCFVFFLLPE 424 (473)
Q Consensus 409 ~~~~~~~~~~~~~~~~ 424 (473)
.++.+++.+.++..||
T Consensus 377 ~~~~~~~~~~~~~~~~ 392 (393)
T PRK15011 377 LVMIIATLFCLLRIKD 392 (393)
T ss_pred HHHHHHHHHHHHhhcC
Confidence 6667777776666654
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.8e-30 Score=244.77 Aligned_cols=322 Identities=12% Similarity=0.082 Sum_probs=231.9
Q ss_pred CCCcccCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhh
Q 012002 21 DSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVAAQNLAMLIVGRILLGCGVGFA 100 (473)
Q Consensus 21 ~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~l~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~ 100 (473)
+.+++|+|..++|++.+...+...+.++++|+++||+|||+++..+.++.+++.+++.++++++.+++.|+++|++.+..
T Consensus 37 ~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~ 116 (400)
T PRK11646 37 FVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIAHEPWLLWLSCILSGLGGTLF 116 (400)
T ss_pred HHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 45677999999999999999999999999999999999999999999999999999999999999999999999999989
Q ss_pred hhhhhHHHhhcCCCCCchhhHHHHHHHHHHHHHHHHHHhhhccccCCccchHHHHHhhhHHHHHHHHH-hhcccCChhhH
Q 012002 101 NQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVG-SLLVTDTPNSL 179 (473)
Q Consensus 101 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~-~~~~~e~p~~~ 179 (473)
.+...+++.|++|+++|++++++.+...++|..+||.++... . +++||+.|++.++..++..++ .++.||.+.
T Consensus 117 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l---~-~~g~~~~f~~~~~~~~~~~i~~~~~~~~~~~-- 190 (400)
T PRK11646 117 DPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWL---L-QYDFRLVCATGAVLFVLAAAFNAWLLPAYKL-- 190 (400)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H-HhhHHHHHHHHHHHHHHHHHHHHHhCCcccc--
Confidence 999999999999999999999999999999999999995544 3 468999999988777665544 344554210
Q ss_pred HhhCChHHHHHHHHHHhCCCCchHHHHHHHHHHhhhhhcccchHHhhcccCchhHHHHHHHHHHhhcchhHHHHHhHHHH
Q 012002 180 IERGRFEEGKAVLRKIRGTDKIEPEFLELVEASRIAKEVKHPFRNLLKRRNRPQLVIAVALQIFQQCTGINAIMFYAPVL 259 (473)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (473)
++. + ++.+.++++.++++. ++...+..+...........+.|.+
T Consensus 191 ---~~~-~----------------------------~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~p~~ 234 (400)
T PRK11646 191 ---STV-R----------------------------TPVREGMTRVLRDKR----FVTYVLTLTGYYMLAVQVMLMLPIM 234 (400)
T ss_pred ---ccc-c----------------------------hhhHHHHHHHHcCch----HHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 000 0 000113445555554 2222222222222223345677888
Q ss_pred HHHcCCCCcchHHHHHHHHHHHHHHHHHHHHHHh-hcCcchhHhHHhHHHHHHHHHHHHHHhhhhccCCcccchhhHHHH
Q 012002 260 FKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVD-KVGRRMLLLEAGIQMFLSQTVIAIILGIKVKDHSEDLHTGFAVLV 338 (473)
Q Consensus 260 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (473)
.++.+.++.+.+...+..++....+....++..| |++.++.+..+.....++..++... ++ .+..
T Consensus 235 ~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~------------~~--~~~~ 300 (400)
T PRK11646 235 VNDIAGSPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMV------------SN--LQQL 300 (400)
T ss_pred HHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHh------------hh--HHHH
Confidence 8776667778888877777766665555565555 4665665665555555554443322 11 1112
Q ss_pred HHHHHHHHHhhhccccccccccccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 012002 339 VIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHF 399 (473)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (473)
.....++..+.. ...|...++..+..|++.||++.|+.+....++..++|.+.|.+.++.
T Consensus 301 ~~~~~l~~~g~~-~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~ 360 (400)
T PRK11646 301 FTLICLFYIGSI-IAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDLG 360 (400)
T ss_pred HHHHHHHHHHHH-HHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHHH
Confidence 222222222222 223445567789999999999999999999999999999999999875
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-29 Score=239.09 Aligned_cols=346 Identities=12% Similarity=0.038 Sum_probs=235.8
Q ss_pred CCCCcccCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhh
Q 012002 20 DDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVAAQNLAMLIVGRILLGCGVGF 99 (473)
Q Consensus 20 ~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~l~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~ 99 (473)
.+.+++|.++.+.+++.+.+.+++.++++++|+++||+|||++++.+.++.++++++++++.+. ++.|+++|++.+.
T Consensus 28 ~~~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~~~~~---~~~r~l~G~~~a~ 104 (393)
T PRK11195 28 ALLKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLMLFGIHP---LLAYGLVGIGAAA 104 (393)
T ss_pred HHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 3456788899999999999999999999999999999999999999999999999988887664 7789999999999
Q ss_pred hhhhhhHHHhhcCCCCCchhhHHHHHHHHHHHHHHHHHHhhhccccCCccchHHHHHhhhHHHHHHHHHhhcccCChhhH
Q 012002 100 ANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVGSLLVTDTPNSL 179 (473)
Q Consensus 100 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~ 179 (473)
..|...+++.|++|+++|++++++.+....+|.++||.+++.... +.|+..+.+.+...++..+..+.+||+|+..
T Consensus 105 ~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~----~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~ 180 (393)
T PRK11195 105 YSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALAD----PHAEAALAVCALIYLLAALFNLFIPRLGARR 180 (393)
T ss_pred HHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhcCCCCcccc
Confidence 999999999999999999999999999999999999999655433 2388777777665555555556678765321
Q ss_pred HhhCChHHHHHHHHHHhCCCCchHHHHHHHHHHhhhhhcccchHHhhcccCchhHHHHHHHHHHhhcchhHHHHHhHHHH
Q 012002 180 IERGRFEEGKAVLRKIRGTDKIEPEFLELVEASRIAKEVKHPFRNLLKRRNRPQLVIAVALQIFQQCTGINAIMFYAPVL 259 (473)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (473)
..++ .++ .. ...+ .....+.+++++..+...+...+.. .......+..|.+
T Consensus 181 ~~~~-~~~-~~-------------~~~~----------~~~~~~~l~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~ 231 (393)
T PRK11195 181 PGQS-WNP-IA-------------LLRD----------FFHACRVLWRDKLGRFSLAGTTLFW----GAGATLRFLVLAW 231 (393)
T ss_pred cccC-CCH-HH-------------HHHH----------HHHHHHHHHhCchhHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 0000 000 00 0000 0112345556555443332222222 1223333444555
Q ss_pred HHH-cCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHhHHhHHHHHHHHHHHHHHhhhhccCCcccchhhHHHH
Q 012002 260 FKT-LGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKDHSEDLHTGFAVLV 338 (473)
Q Consensus 260 ~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (473)
.++ +|.++.+.+......+++.+++.+..+++.||.++++.+..+. ..++....+.. . ...+..
T Consensus 232 ~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~-~~~~~~~~~~~-------------~-~~~~~~ 296 (393)
T PRK11195 232 APVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGI-LMGLVVLLMAL-------------Q-HSLLPA 296 (393)
T ss_pred HHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHH-HHHHHHHHHHH-------------H-hHHHHH
Confidence 544 8999999999999999999999999999999998887776653 22222222211 1 112222
Q ss_pred HHHHHHHHHhhhccccccccccccccccccc-hhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHH
Q 012002 339 VIMICTFISAFAWSWGPLGWLIPSETFPLET-RSAGQSVTVCVNLLFTFVIAQAFLSMLCHFKFGIFLFFSGWVLIMSCF 417 (473)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (473)
.....+.+.+......+ ..+...+..|++. +|++.++.+...+++..++..+.+.+ +..+....+.+.+++.+.+..
T Consensus 297 ~~~~~~~G~~~g~~~~~-~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 374 (393)
T PRK11195 297 YPLLILIGALGGFFVVP-MNALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLL-VKLGVPVVAVIVGFGLLVALA 374 (393)
T ss_pred HHHHHHHHHhhhhhhhh-HHHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHH
Confidence 22222222222222223 3445567655554 79999999999999999999988855 555655555555555544443
Q ss_pred H
Q 012002 418 V 418 (473)
Q Consensus 418 ~ 418 (473)
.
T Consensus 375 ~ 375 (393)
T PRK11195 375 M 375 (393)
T ss_pred H
Confidence 3
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.9e-29 Score=241.84 Aligned_cols=358 Identities=12% Similarity=0.076 Sum_probs=245.4
Q ss_pred cCCCCCcccCCCchhHHHHHHHHHHHHHHHHHHHHhhhhh-----hhHHH-HHHHHHHHHHHHHHHHHh---hhHHHHHH
Q 012002 18 QGDDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRRL-----GRRLT-MLIAGIFFIAGVAFNVAA---QNLAMLIV 88 (473)
Q Consensus 18 ~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~Dr~-----Grr~~-l~~~~~l~~i~~~~~~~~---~~~~~l~~ 88 (473)
.|..-++.|.+.+++|.+ +.....+ ++.+++|+++||+ ||||. ++.+.++.+++..++++. ++++.+.+
T Consensus 35 l~~~l~~~g~~~~~ig~~-~~~~~~~-~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~~~~~~~~a~~~~~~~l~~l~~ 112 (491)
T PRK11010 35 LQAWMTVENIDLKTIGFF-SLVGQAY-VFKFLWSPLMDRYTPPFLGRRRGWLLATQLLLLVAIAAMGFLEPGTQLRWLAA 112 (491)
T ss_pred HHHHHHhCCCCHHHHHHH-HHHHHHH-HHHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHHHHcCCcchHHHHHH
Confidence 344445558899999987 4444444 6889999999999 99885 667888887888887775 47889999
Q ss_pred HHHHHhhhhhhhhhhhhHHHhhcCCCCCchhhHHHHHHHHHHHHHHHHHHhhhccccCC-ccchHHHHHhhhHHHHHHHH
Q 012002 89 GRILLGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTSHIKS-QWGWRISLGLAGIPAALLTV 167 (473)
Q Consensus 89 ~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~-~~~wr~~f~~~~~~~~~~~~ 167 (473)
.|++.|++.+...+...+++.|++|++||+++.++...+..+|.++++.+ ...+.+ ..|||..|++.++..++..+
T Consensus 113 ~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l---~~~l~~~~~GWr~~f~i~a~l~ll~~l 189 (491)
T PRK11010 113 LAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGL---ALWLADRYLGWQGMYWLMAALLIPCII 189 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHH---HHHHHhcccCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999988 444444 46999999999988777766
Q ss_pred HhhcccCChhhHHhhCChHHHHHHHHHHhCCCCchHHHHHHHHHHhhhhhcccchHHhhcccCchhHHHHHHHHHHhhcc
Q 012002 168 GSLLVTDTPNSLIERGRFEEGKAVLRKIRGTDKIEPEFLELVEASRIAKEVKHPFRNLLKRRNRPQLVIAVALQIFQQCT 247 (473)
Q Consensus 168 ~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (473)
..+++||+++.. +.++ +. ++....++++.++++..+. ..+..+....
T Consensus 190 ~~~~~~e~~~~~----~~~~--------------~~-----------~~~~~~~l~~~~~~~~~~~----~ll~~~l~~~ 236 (491)
T PRK11010 190 ATLLAPEPTDTI----PVPK--------------TL-----------EQAVVAPLRDFFGRNNAWL----ILLLIVLYKL 236 (491)
T ss_pred HHHhcCCCcccc----cccc--------------ch-----------hhhHHHHHHHHHcCcCHHH----HHHHHHHHHH
Confidence 655677754210 0000 00 0001123455555444222 1111222222
Q ss_pred hhHHHHHhHHHHH-HHcCCCCcchHHHHH-HHHHHHHHHHHHHHHHHhhcCcchhHhHHhHHHHHHHHHHHHHHhhhhcc
Q 012002 248 GINAIMFYAPVLF-KTLGFGGSASLYSTV-ITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKD 325 (473)
Q Consensus 248 ~~~~~~~~~~~~~-~~~g~~~~~~~~~~~-~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (473)
.......+.+.++ ++.|++..+.+.... ...++.+++.++.|+++||+++|+.+.++.....+..........
T Consensus 237 ~~~~~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~----- 311 (491)
T PRK11010 237 GDAFAMSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSI----- 311 (491)
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh-----
Confidence 3333344445444 568999999998874 556799999999999999999988777665554444433322111
Q ss_pred CCcccchhhHHHHHHHHHHHHHhhhccccccccccccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHH
Q 012002 326 HSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHFKFGIFL 405 (473)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (473)
.....+......++.....+... +..+++..+..+++.+++..|+.+....++..+++++.|.+.+..|+...+
T Consensus 312 -----~~~~~~~l~~~~~l~~~~~g~~~-~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G~~~~f 385 (491)
T PRK11010 312 -----TDKNLYSMGAAVFFENLCGGMGT-AAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAHGWPTFY 385 (491)
T ss_pred -----ccccHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHH
Confidence 10111111111111111111111 223556678889999999999999999999999999999999998888877
Q ss_pred HHHHHHHHHHHHHHhhccC
Q 012002 406 FFSGWVLIMSCFVFFLLPE 424 (473)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~ 424 (473)
.+..++.+.+++.....++
T Consensus 386 ~~~~~~~l~~l~~~~~~~~ 404 (491)
T PRK11010 386 LFSVAAAVPGLLLLLVCRQ 404 (491)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 7777777777666666554
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.9e-30 Score=241.26 Aligned_cols=337 Identities=12% Similarity=0.071 Sum_probs=227.6
Q ss_pred hhhhccccCC-CCCcccCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhh-hHHHHHH
Q 012002 11 VVYRRTQQGD-DSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVAAQ-NLAMLIV 88 (473)
Q Consensus 11 ~~~~~~~~~~-~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~l~~i~~~~~~~~~-~~~~l~~ 88 (473)
.....+..|. +++++|+|+.+.+++.+.+.+++.++++++|+++||+|||+.++++.++.+++.+++++++ +++.+++
T Consensus 17 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 96 (366)
T TIGR00886 17 WFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLAVQSYSVLLL 96 (366)
T ss_pred HHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 3344566674 8899999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred HHHHHhhhhhhhhhhhhHHHhhcCCCCCchhhHHHHHHHHHHHHHHHHHHhhhccc-cC------CccchHHHH-HhhhH
Q 012002 89 GRILLGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTSH-IK------SQWGWRISL-GLAGI 160 (473)
Q Consensus 89 ~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~-~~------~~~~wr~~f-~~~~~ 160 (473)
.|+++|++.+ ..+....+++|++|+++|++++++.....++|..+++.++..... +. .+.+||+.| +..++
T Consensus 97 ~~~~~g~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~~~~~~~~~~ 175 (366)
T TIGR00886 97 LRLFIGIAGG-SFASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAFVIVPAG 175 (366)
T ss_pred HHHHHHHhch-hhHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHH
Confidence 9999999966 456778999999999999999999987777777777666432221 11 235899999 44454
Q ss_pred HHHHHHHH-hhcccCChhhHHhhCChHHHHHHHHHHhCCCCchHHHHHHHHHHhhhhhcccchHHhhcccCchhHHHHHH
Q 012002 161 PAALLTVG-SLLVTDTPNSLIERGRFEEGKAVLRKIRGTDKIEPEFLELVEASRIAKEVKHPFRNLLKRRNRPQLVIAVA 239 (473)
Q Consensus 161 ~~~~~~~~-~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (473)
+..+..++ ..+.+|+|+.. ++.++.+ ..+.... .+++......+.+++++ ++...
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~-------~~~~~~~----------~~~~~~~~~~~~~~~~~----~~~~~ 231 (366)
T TIGR00886 176 ILLLPALLIFFVGADTPPGK---PATGKLS-------FKGARWS----------VGTGALGDQLKVFRDRH----TWILA 231 (366)
T ss_pred HHHHHHHHHHHhcccCCccc---ccchhcc-------ccccccc----------ccchhHHHHHHHHhccc----hhhHH
Confidence 44444333 44566665311 0000000 0000000 00000112344555554 34444
Q ss_pred HHHHhhcchhHHHHHhHHHHHHH-cCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHhHHhHHHHHHHHHHHHH
Q 012002 240 LQIFQQCTGINAIMFYAPVLFKT-LGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAII 318 (473)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (473)
+..++..........+.|.++++ +|+++.+++.......+..++++++.+++.||+++|+.+..+......+..++...
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~ 311 (366)
T TIGR00886 232 LLYSVTFGSFLGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGARKLLMSFLGVAMGAFLVVLG 311 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhhccchhHHHHHHHHHHHHHHHHhc
Confidence 44444444556677778877765 79999999988888999999999999999999999988776665555544444332
Q ss_pred HhhhhccCCcccchhhHHHHHHHHHHHHHhhhccccccccccccccccccchhhhHHHHHHHHHHH
Q 012002 319 LGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLF 384 (473)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 384 (473)
.. .....+.............+... +..+.+..+..| +++|++.|+.+..+++|
T Consensus 312 ~~----------~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g 365 (366)
T TIGR00886 312 LV----------SPLSLAVFIVLFVALFFFSGAGN-GSTFALVPHIFR-RATGAVSGLVGAIGNLG 365 (366)
T ss_pred CC----------CcchHHHHHHHHHHHHHHhcccc-chhhhcchhhch-hhcccHHHHHHHhccCC
Confidence 10 10012222222222222222222 344566678776 68999999998887764
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-29 Score=238.24 Aligned_cols=334 Identities=10% Similarity=0.055 Sum_probs=237.8
Q ss_pred hhhhccccCCCCCcccCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHH---hhhHHHHH
Q 012002 11 VVYRRTQQGDDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVA---AQNLAMLI 87 (473)
Q Consensus 11 ~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~l~~i~~~~~~~---~~~~~~l~ 87 (473)
..+.++..|.+++++|+|+.+.|++.+.+.+++.+++++.|++.||+|||+++.++.++++++.+++.. .++++.++
T Consensus 19 ~~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~~~~~~~~~~~~~l 98 (410)
T TIGR00885 19 NDITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFLFWPAAEIMNYTLFL 98 (410)
T ss_pred HHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHhhccHHHHH
Confidence 345566778889999999999999999999999999999999999999999999999999999988654 36899999
Q ss_pred HHHHHHhhhhhhhhhhhhHHHhhcCCCCCchhhHHHHHHHHHHHHHHHHHHhhhccccC---------------------
Q 012002 88 VGRILLGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTSHIK--------------------- 146 (473)
Q Consensus 88 ~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~--------------------- 146 (473)
+.|++.|+|.|...+..++++.+..|+++|++.+++.+...++|..+++.++.......
T Consensus 99 ~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (410)
T TIGR00885 99 VGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQDVLDKLSPEELSAIK 178 (410)
T ss_pred HHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhhhhcCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998865442110
Q ss_pred --CccchHHHHHhhhHHHHHHHHHhhc--ccCChhhHHhhCChHHHHHHHHHHhCCCCchHHHHHHHHHHhhhhhcccch
Q 012002 147 --SQWGWRISLGLAGIPAALLTVGSLL--VTDTPNSLIERGRFEEGKAVLRKIRGTDKIEPEFLELVEASRIAKEVKHPF 222 (473)
Q Consensus 147 --~~~~wr~~f~~~~~~~~~~~~~~~~--~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (473)
+..+||++|++.+++.++..++..+ .||.++ + ++ ++.+...+.
T Consensus 179 ~~~~~~w~~~fl~~a~~~~~~~~~~~~~~~p~~~~------~-~~--------------------------~~~~~~~~~ 225 (410)
T TIGR00885 179 HSDLASVQTPYMIIGAVVLAVALLIMLTKMPALNH------S-DA--------------------------KQISFSASL 225 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc------c-cc--------------------------ccccchhhH
Confidence 1246999999988877766554433 333110 0 00 000001123
Q ss_pred HHhhcccCchhHHHHHHHHHHhhcchhHHHHHhHHHHHHHc--CCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCcchh
Q 012002 223 RNLLKRRNRPQLVIAVALQIFQQCTGINAIMFYAPVLFKTL--GFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRML 300 (473)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~ 300 (473)
++++|++. ++...+..++..........+.+.+.++. +.+...++...........+|+++++++.||+++|+.
T Consensus 226 ~~~~~~~~----~~~~~l~~f~yvg~e~~~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~~~~~~ 301 (410)
T TIGR00885 226 SRLARIRH----YREGVIAQFFYVGVQIMCWTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISYLAAHKV 301 (410)
T ss_pred HHHHhChh----HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHH
Confidence 34555554 33344444445555555667777777654 3333444555666667889999999999999999998
Q ss_pred HhHHhHHHHHHHHHHHHHHhhhhccCCcccchhhHHHHHHHHHHHHHhhhccccccccccccccccccchhhhHHHHHHH
Q 012002 301 LLEAGIQMFLSQTVIAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCV 380 (473)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 380 (473)
+.+......+..++.... +... ..........+.+..+ |..++...+..+++.+..+.++....
T Consensus 302 l~i~~~~~~~~~ll~~~~------------~~~~---~~~~l~~~glf~s~~f-p~i~sl~~~~~g~~~~~~s~~l~~~~ 365 (410)
T TIGR00885 302 LMAYAIIGMALCLGSIFA------------GGHV---GLYCLTLCSAFMSLMF-PTIYGIALKGLGQDTKYGAAGLVMAI 365 (410)
T ss_pred HHHHHHHHHHHHHHHHHc------------CChH---HHHHHHHHHHHHHHHH-HHHHHHHHhhhhhhhhhhHHHHHHHH
Confidence 887766666665555442 1111 1222222223333333 56677777888877655455554443
Q ss_pred HHHHHHHHHHHHHHHhhhh
Q 012002 381 NLLFTFVIAQAFLSMLCHF 399 (473)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~ 399 (473)
+|+.+.|++.|.+.|..
T Consensus 366 --~Gga~~p~l~G~~~d~~ 382 (410)
T TIGR00885 366 --IGGGIVPPLQGFIIDMK 382 (410)
T ss_pred --hccchHHHHHHHHHHHh
Confidence 89999999999999954
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-29 Score=235.94 Aligned_cols=327 Identities=12% Similarity=0.075 Sum_probs=234.5
Q ss_pred ccccCCCCCcccCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHh
Q 012002 15 RTQQGDDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVAAQNLAMLIVGRILLG 94 (473)
Q Consensus 15 ~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~l~~i~~~~~~~~~~~~~l~~~r~l~G 94 (473)
.+..|.+.+++|+|.++.|++.+.+.+++.+++++.|+++||+|||+++.++.++..++.+.+ .+++++.+++.|++.|
T Consensus 20 ~~~lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g 98 (355)
T TIGR00896 20 GPLLPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SAPGTALLFAGTALIG 98 (355)
T ss_pred cccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-HhccHHHHHHHHHHHH
Confidence 345677899999999999999999999999999999999999999999999999988888887 7889999999999999
Q ss_pred hhhhhhhhhhhHHHhhcCCCCCchhhHHHHHHHHHHHHHHHHHHhhhccccCCcc--chHHHHHhhhHHHHHHHHHhhcc
Q 012002 95 CGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTSHIKSQW--GWRISLGLAGIPAALLTVGSLLV 172 (473)
Q Consensus 95 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~--~wr~~f~~~~~~~~~~~~~~~~~ 172 (473)
++.+...+....++.|+++ ++|++++++.+.+.++|..+++.++... .+.. +||+.|.+.++..++... .++
T Consensus 99 ~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l---~~~~~~~w~~~f~~~~~~~~~~~~--~~~ 172 (355)
T TIGR00896 99 VGIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPL---AQHSGGHWQQALAWWALPALLALL--AWI 172 (355)
T ss_pred HHHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHH---HHhhhhhHHHHHHHHHHHHHHHHH--HHh
Confidence 9999988888889999986 5799999999999999999999884433 2222 499998877665443322 233
Q ss_pred cCChhhHHhhCChHHHHHHHHHHhCCCCchHHHHHHHHHHhhhhhcccchHHhhcccCchhHHHHHHHHHHhhcchhHHH
Q 012002 173 TDTPNSLIERGRFEEGKAVLRKIRGTDKIEPEFLELVEASRIAKEVKHPFRNLLKRRNRPQLVIAVALQIFQQCTGINAI 252 (473)
Q Consensus 173 ~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (473)
|+.++. .++ +++..+...++.+|++. .+...+..++....+...
T Consensus 173 ~~~~~~------~~~--------------------------~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 216 (355)
T TIGR00896 173 PQVRRR------VAA--------------------------NQTTTRLTPVRIWRSPL----AWQVTVFFGLQSGLYYSL 216 (355)
T ss_pred hhhccc------cCC--------------------------CCCCCCCCCchhhcCHh----HHHHHHHHHHHHHHHHHH
Confidence 432210 000 00001122334455443 333334444444556667
Q ss_pred HHhHHHHHHHcCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcC-cchhHhHHhHHHHHHHHHHHHHHhhhhccCCcccc
Q 012002 253 MFYAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVG-RRMLLLEAGIQMFLSQTVIAIILGIKVKDHSEDLH 331 (473)
Q Consensus 253 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (473)
..+.|.++++.|++..+.+...+...++.++++++.|++.||++ ||+.+..+.....++.+.+... .
T Consensus 217 ~~~lp~~~~~~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~------------~ 284 (355)
T TIGR00896 217 IGWLPAILISHGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFA------------P 284 (355)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHh------------h
Confidence 78899888889999999999999999999999999999999994 5556666655555555444432 1
Q ss_pred hhhHHHHHHHHHHHHHhhhcccccccccccccc-ccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 012002 332 TGFAVLVVIMICTFISAFAWSWGPLGWLIPSET-FPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHFK 400 (473)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (473)
....+. ...++. .......+.......+. .+++.++...++.+..++++..++|.+.|.+.|+.+
T Consensus 285 ~~~~~~---~~~l~g-~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~g 350 (355)
T TIGR00896 285 MHGLWA---WALVLG-LGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDISG 350 (355)
T ss_pred hhHHHH---HHHHHH-HhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 111111 111112 22222223333333333 345677889999999999999999999999998875
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.7e-30 Score=240.96 Aligned_cols=341 Identities=11% Similarity=0.033 Sum_probs=240.1
Q ss_pred cCCCCCcccCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhh
Q 012002 18 QGDDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVAAQNLAMLIVGRILLGCGV 97 (473)
Q Consensus 18 ~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~l~~i~~~~~~~~~~~~~l~~~r~l~G~~~ 97 (473)
.+.+++++|+|..++|++.+.+.+++.+++++.|+++||+|||++++++.++.+++.++.+++++++.++++|++.|.+.
T Consensus 31 ~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 110 (395)
T PRK10054 31 TIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIPLVNNVTLVVLFFALINCAY 110 (395)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 34566788999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred hhhhhhhhHHHhhcCCCCCchhhHHHHHHHHHHHHHHHHHHhhhccccCCccchHHHHHhhhHHHHHHHHHh-hcccCCh
Q 012002 98 GFANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVGS-LLVTDTP 176 (473)
Q Consensus 98 ~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~-~~~~e~p 176 (473)
+...+...++..|.+|+++|++++++.+...++|.+++|.++.... . .+||..|++.++..++..+.. +++||++
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~---~-~g~~~~f~~~~~~~~i~~i~~~~~~~~~~ 186 (395)
T PRK10054 111 SVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLV---M-QSINLPFWLAAICSAFPLVFIQIWVQRSE 186 (395)
T ss_pred HHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H-hccCcHHHHHHHHHHHHHHHHHHHHhccc
Confidence 8888899999999999999999999999999999999999965443 2 589999999887777665443 4455543
Q ss_pred hhHHhhCChHHHHHHHHHHhCCCCchHHHHHHHHHHhhhhhcccchHHhhcccCchhHHHHHHHHHHhhcchhHHHHHhH
Q 012002 177 NSLIERGRFEEGKAVLRKIRGTDKIEPEFLELVEASRIAKEVKHPFRNLLKRRNRPQLVIAVALQIFQQCTGINAIMFYA 256 (473)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (473)
+. ++ ++ + + + ..+.++.+|++.. +...+..++..........+.
T Consensus 187 ~~----~~-~~--------------~----------~--~--~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~ 229 (395)
T PRK10054 187 KA----IA-TE--------------T----------G--S--VWSPSVLLQDKAL----LWFTCSGFLASFVSGAFASCI 229 (395)
T ss_pred cc----cc-cc--------------h----------h--h--hhhhhhhccCcee----hHHHHHHHHHHHHHHHhhhhH
Confidence 10 00 00 0 0 0 0011344555553 222222222222233333344
Q ss_pred HHHHH---HcCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHhHHhHHHHHHHHHHHHHHhhhhccCCcccchh
Q 012002 257 PVLFK---TLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKDHSEDLHTG 333 (473)
Q Consensus 257 ~~~~~---~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (473)
+.+.. +.+.+....+.......+.........+++.||.++|+.+..+.....++...+... . .
T Consensus 230 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~------------~-~ 296 (395)
T PRK10054 230 SQYVMVVADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIRPLMTAGTLCFVIGLVGFIFS------------G-N 296 (395)
T ss_pred HHHHHHhcccchHHHHHHHHHHhhhhheeeehhHHHHHHccCCchhHHHHHHHHHHHHHHHHHHc------------c-h
Confidence 44432 345555566677777777777777888999999999998887776666665544431 1 1
Q ss_pred hHHHHHHHHHHHHHhhhccccccccccccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHH
Q 012002 334 FAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHFKFGIFLFFSGWVLI 413 (473)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (473)
..+...+....+..+ .....|.....+.+..|++.++++.+..+ ...+|..++|.+.|.+.|+.++...+...+.+..
T Consensus 297 ~~~~~~~~~~~~~~g-~~~~~p~~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~~~g~~~~~~~~~~~~~ 374 (395)
T PRK10054 297 SLLLWGMSAAVFTVG-EIIYAPGEYMLIDHIAPPGMKASYFSAQS-LGWLGAAINPLVSGVILTTLPPWSLFVILALAIV 374 (395)
T ss_pred HHHHHHHHHHHHHHH-HHHHHhhHHHHHHHhCCcccceehHhHHH-HHHHHHHHHHHHHHHHHHHcChhhHHHHHHHHHH
Confidence 122222222222222 22333455566778889999999988654 6778999999999999999887666655444433
Q ss_pred H
Q 012002 414 M 414 (473)
Q Consensus 414 ~ 414 (473)
.
T Consensus 375 ~ 375 (395)
T PRK10054 375 A 375 (395)
T ss_pred H
Confidence 3
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.3e-29 Score=236.98 Aligned_cols=331 Identities=16% Similarity=0.136 Sum_probs=232.0
Q ss_pred cccCCCCCcccCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhh
Q 012002 16 TQQGDDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVAAQNLAMLIVGRILLGC 95 (473)
Q Consensus 16 ~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~l~~i~~~~~~~~~~~~~l~~~r~l~G~ 95 (473)
+..|.+.+++|+|+.+.+++.+.+.+++.++++++|+++||+|||+++..+..+..++.+++.++++++.+++.|++.|+
T Consensus 29 p~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 108 (394)
T PRK11652 29 PAIADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALFAHSLTVLIAASAIQGL 108 (394)
T ss_pred ccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHh
Confidence 34567788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhhHHHhhcCCCCCchhhHHHHHHHHHHHHHHHHHHhhhccccCCccchHHHHHhhhHHHHHHHHH-hhcccC
Q 012002 96 GVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVG-SLLVTD 174 (473)
Q Consensus 96 ~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~-~~~~~e 174 (473)
+.+...+....+..|++++++|+++.++.+.+..+|..++|.++. .+.+..|||+.|++.++..++..+. .++.||
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~---~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~ 185 (394)
T PRK11652 109 GTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGG---LLTTLFGWRACYLFLLLLGAGVTFSMARWMPE 185 (394)
T ss_pred hhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhccChHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 999888888899999999999999999999999999999999844 4445678999999988777655544 455677
Q ss_pred ChhhHHhhCChHHHHHHHHHHhCCCCchHHHHHHHHHHhhhhhcccchHHhhcccCchhHHHHHHHHHHhhcchhHHHHH
Q 012002 175 TPNSLIERGRFEEGKAVLRKIRGTDKIEPEFLELVEASRIAKEVKHPFRNLLKRRNRPQLVIAVALQIFQQCTGINAIMF 254 (473)
Q Consensus 175 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (473)
+++.. + ++ ++.+..+++.++++..+. ..+..+........+..
T Consensus 186 ~~~~~----~-~~----------------------------~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 228 (394)
T PRK11652 186 TRPAD----A-RR----------------------------TRVLASYRTLLSNRRFNC----YLLMLIGTLAGIAVFEA 228 (394)
T ss_pred cCccc----c-ch----------------------------hHHHHHHHHHHcChHHHH----HHHHHHHHHHHHHHHHH
Confidence 54210 0 00 001122344455444222 22222222233344445
Q ss_pred hHHHHHHH-cCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHhHHhHHHHHHHHHHHHHHhhhhccCCcccchh
Q 012002 255 YAPVLFKT-LGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKDHSEDLHTG 333 (473)
Q Consensus 255 ~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (473)
+.+.++++ +|+++.+.+.......++.+++..+.+++.||.+++.... .....+.......... . ...
T Consensus 229 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~-~--------~~~ 297 (394)
T PRK11652 229 CSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLMWQS--VICCLLAGLLMWIPGW-F--------GVM 297 (394)
T ss_pred hChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH-h--------ccc
Confidence 55666665 8999888888888888888889999999999987333222 2222222111111100 0 011
Q ss_pred hHHHHHHHHHHHHHhhhccccccccccccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 012002 334 FAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHF 399 (473)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (473)
..+.......+...+... ..|....+..|.+| +.++++.++.+....+|+.+++.+.+.+....
T Consensus 298 ~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~lg~~~~~~~~~~~~~~~ 361 (394)
T PRK11652 298 NVWTLLVPAALFFFGAGM-LFPLATSGAMEPFP-YLAGTAGALLGGLQNIGSGLAALLSAMLPQTG 361 (394)
T ss_pred cHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhcc-ccchHHHHHHHHHHHHHHHHHHHHHHHccCCc
Confidence 122222222222222222 23455555667776 57899999999999999999999988876553
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.1e-29 Score=234.41 Aligned_cols=364 Identities=11% Similarity=0.030 Sum_probs=239.4
Q ss_pred HhhhhccccCCCCCcccCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhh-HHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 012002 10 PVVYRRTQQGDDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGR-RLTMLIAGIFFIAGVAFNVAAQNLAMLIV 88 (473)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~Dr~Gr-r~~l~~~~~l~~i~~~~~~~~~~~~~l~~ 88 (473)
.+.+.+++.+.+.+++|++..|+|++.+++.++..++++++|.++||+|| |+++.++.++.+++..+..+.++++.+++
T Consensus 18 ~~~~~~~l~~~l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (418)
T TIGR00889 18 WGSWLVTLGSYMSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFFAAQVTTPAGMFP 97 (418)
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 35566777778888999999999999999999999999999999999965 78889899999899999999999999999
Q ss_pred HHHHHhhhhhhhhhhhhHHHhhc--------CCCCCchhhHHHHHHHHHHHHHHHHHHhhhccccCCccchHHHHHhhhH
Q 012002 89 GRILLGCGVGFANQAVPLFLSEI--------APTRIRGGLNILFQLNVTIGILFANLVNYGTSHIKSQWGWRISLGLAGI 160 (473)
Q Consensus 89 ~r~l~G~~~~~~~~~~~~~i~~~--------~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~wr~~f~~~~~ 160 (473)
.|++.|++.+...+...++...+ .....|.+..| .+|.++++.++.... ....|+ +|++.++
T Consensus 98 ~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~r~~G------~lG~~ig~~l~g~l~---~~~~~~-~f~~~~~ 167 (418)
T TIGR00889 98 VLLANSLAYMPTIALTNSISYANLPQAGLDVVTDFPPIRVMG------TIGFIAAMWAVSLLD---IELSNI-QLYITAG 167 (418)
T ss_pred HHHHHHHHHccHHHHHHHHHHHHHhhcCCCchhcCCCeeeeh------hHHHHHHHHHHHHhc---ccchhH-HHHHHHH
Confidence 99999998877777666554222 22233455555 357777777744332 122354 4556666
Q ss_pred HHHHHHHHhhcccCChhhHHhhCChHHHHHHHHHHhCCCCchHHHHHHHHHHhhhhhcccchHHhhcccCchhHHHHHHH
Q 012002 161 PAALLTVGSLLVTDTPNSLIERGRFEEGKAVLRKIRGTDKIEPEFLELVEASRIAKEVKHPFRNLLKRRNRPQLVIAVAL 240 (473)
Q Consensus 161 ~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (473)
..++..++.+++||+|+. +++ ++ .. . ++..+.+.++++|++... .+.+
T Consensus 168 ~~~~~~~~~~~~~e~~~~---~~~-~~---------------~~--------~-~~~~~~~~~~~~k~~~~~----~~~~ 215 (418)
T TIGR00889 168 SSALLGVFALTLPDIPVA---KST-AK---------------MS--------I-KVMLGLDAFILFKNKRMA----IFFF 215 (418)
T ss_pred HHHHHHHHHhcCCCCCCC---ccc-cc---------------cC--------H-HHHhhhhHHHHhcCCCee----eHHH
Confidence 565555556678886521 000 00 00 0 000011234456666532 2222
Q ss_pred HHHhhcchhHHHHHhHHHHHHHcCCCC--------cchHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHhHHhHHHHHHH
Q 012002 241 QIFQQCTGINAIMFYAPVLFKTLGFGG--------SASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQ 312 (473)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~g~~~--------~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~ 312 (473)
..++..........+.+.+.++.|.++ ...+...+...+..+++.+..+++.||+|+|+.+..+.+...+..
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~ 295 (418)
T TIGR00889 216 FSMLLGAPLQITNIFGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRF 295 (418)
T ss_pred HHHHHHhHHHHHHHhHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHH
Confidence 233323333344456676777766554 556888888899999999999999999999999998887776665
Q ss_pred HHHHHHHhhhhccCCcccchh-hHHHHHHHHHHHHHhhhccccccccccccccccccchhhhHHHHH-HHHHHHHHHHHH
Q 012002 313 TVIAIILGIKVKDHSEDLHTG-FAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTV-CVNLLFTFVIAQ 390 (473)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~-~~~~~~~~~~~~ 390 (473)
.++.... ... ..+......++...... ...+....++.|.+|++.|+++.|+.+ ....+|..++|.
T Consensus 296 ~l~~~~~-----------~~~~~~~~l~l~~~l~g~~~~-~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~ 363 (418)
T TIGR00889 296 GFFAYGD-----------PEYFGYALLFLSMIVYGCAFD-FFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYI 363 (418)
T ss_pred HHHHHcC-----------cchhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 5444310 111 11222222222222222 223344566789999999999999997 567889999999
Q ss_pred HHHHHhhhhh------hhHHH-HHHHHHHHHHHHHHhhccCCCC
Q 012002 391 AFLSMLCHFK------FGIFL-FFSGWVLIMSCFVFFLLPETKN 427 (473)
Q Consensus 391 ~~~~~~~~~~------~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 427 (473)
+.|.+.++.+ |...+ ..+++..+.+++.+++.+++++
T Consensus 364 l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~~~ 407 (418)
T TIGR00889 364 LSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFKYSHN 407 (418)
T ss_pred HHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhCCccc
Confidence 9999998753 44444 4444555556666666665543
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.9e-29 Score=232.13 Aligned_cols=339 Identities=13% Similarity=0.038 Sum_probs=242.0
Q ss_pred ccCCCCCcccCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHH----HHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 012002 17 QQGDDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTM----LIAGIFFIAGVAFNVAAQNLAMLIVGRIL 92 (473)
Q Consensus 17 ~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l----~~~~~l~~i~~~~~~~~~~~~~l~~~r~l 92 (473)
..|.+.+++|+|..++|++.+++.+...++++++|+++||+|||+.. ..+..+..+ ..+..+++++.+++.|++
T Consensus 26 ~l~~~l~~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~l~~~~~l 103 (382)
T TIGR00902 26 FFPAWLKGIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALASAIFAA--AFSAGAHNAWLLFIAIGL 103 (382)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH--HHHHhhhhHHHHHHHHHH
Confidence 34455667899999999999999999999999999999999985433 233222222 244567899999999999
Q ss_pred HhhhhhhhhhhhhHHHhhcCCCCCchhhHHHHHHHHHHHHHHHHHHhhhccccCCccchHHHHHhhhHHHHHHHHHhhcc
Q 012002 93 LGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVGSLLV 172 (473)
Q Consensus 93 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~ 172 (473)
+|.+.+...|...++..++ +++|++.++......++|.+++|++ .+.+.+++|||..|++..+..++.. +.+.+
T Consensus 104 ~~~~~~~~~p~~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~l---~g~l~~~~g~~~~f~~~~~~~~~~~-~~~~~ 177 (382)
T TIGR00902 104 FALFFSAGMPIGDALANTW--QKQFGLDYGKVRLIGSAAFIIGSAL---FGGLIGMFDEQNILAILTAGLAFML-IGFLI 177 (382)
T ss_pred HHHHHccchhHHHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHHH---HHHHHHHcChhHHHHHHHHHHHHHH-HHHHc
Confidence 9999988899988887765 4678999999999999999999999 5556667899999988765533333 33333
Q ss_pred cCChhhHHhhCChHHHHHHHHHHhCCCCchHHHHHHHHHHhhhhhcccchHHhhcccCchhHHHHHHHHHHhhcchhHHH
Q 012002 173 TDTPNSLIERGRFEEGKAVLRKIRGTDKIEPEFLELVEASRIAKEVKHPFRNLLKRRNRPQLVIAVALQIFQQCTGINAI 252 (473)
Q Consensus 173 ~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (473)
+|+++. +++ ++ +++++...+.++++|+++ ++...+..++.......+
T Consensus 178 ~~~~~~---~~~-~~-------------------------~~~~~~~~~~~~~l~~~~----~~~~l~~~~l~~~~~~~~ 224 (382)
T TIGR00902 178 KPTIPP---KDA-IP-------------------------EDESQGDSAFIALLKNPM----NLRFLAAVCLIQGAHAAY 224 (382)
T ss_pred CCCCCC---Ccc-cc-------------------------ccccccchhHHHHHcChH----HHHHHHHHHHHHHHHHHH
Confidence 443210 000 00 000011223456666655 444455555555566777
Q ss_pred HHhHHHHHHHcCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHhHHhHHHHHHHHHHHHHHhhhhccCCcccch
Q 012002 253 MFYAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKDHSEDLHT 332 (473)
Q Consensus 253 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (473)
..+.|.++++.|.++.+.+.......++.+++....+++.||+++|+.+.++.+...+.........
T Consensus 225 ~~~~~~~l~~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~------------- 291 (382)
T TIGR00902 225 YGFSAIYWQAAGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAIE------------- 291 (382)
T ss_pred HHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhHh-------------
Confidence 7788888888999999999999999999999999999999999999999988888887776665431
Q ss_pred hhHHHHHHHHHHHHHhhhccccccccccccccccccchhhhHHHHHH-HHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHH
Q 012002 333 GFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVC-VNLLFTFVIAQAFLSMLCHFKFGIFLFFSGWV 411 (473)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (473)
+.+.......+....+.... +....++.+. |++.++++.++.+. ...+|..+++.+.|.+.|+.+...++..+++.
T Consensus 292 -~~~~~~~~q~l~g~~~~~~~-~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g~~~~~~~~~~~ 368 (382)
T TIGR00902 292 -AFPLIFLLQILHCGTFAVCH-LAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLGAGTFVFMAIIA 368 (382)
T ss_pred -hHHHHHHHHHHHHHHHHHHH-HHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 22223333333333333322 3345566777 88899999999874 56689999999999999998875555554444
Q ss_pred H
Q 012002 412 L 412 (473)
Q Consensus 412 ~ 412 (473)
+
T Consensus 369 ~ 369 (382)
T TIGR00902 369 A 369 (382)
T ss_pred H
Confidence 3
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.2e-28 Score=222.53 Aligned_cols=355 Identities=9% Similarity=0.062 Sum_probs=233.4
Q ss_pred ccccCCCCCcccCCCch-hHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 012002 15 RTQQGDDSNYCKYDNQG-LQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVAAQNLAMLIVGRILL 93 (473)
Q Consensus 15 ~~~~~~~~~~~~~s~~~-~~~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~l~~i~~~~~~~~~~~~~l~~~r~l~ 93 (473)
+...|.+.+|+|+|++| .|.+.++++.+|+++.+++|+++||+|.|+++.++.+.+++.+++.+++++++.+.+.|++.
T Consensus 46 s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~Sl~~L~i~R~ll 125 (511)
T TIGR00806 46 SFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGTSVWHMQLMEVFY 125 (511)
T ss_pred HHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556788899999999 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhhhhHHHhhcCCCCCchhhHHHHHHHHHHHHHHHHHHhhhccccCCccchHHHHHhh---hHHHHHHHHHhh
Q 012002 94 GCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTSHIKSQWGWRISLGLA---GIPAALLTVGSL 170 (473)
Q Consensus 94 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~wr~~f~~~---~~~~~~~~~~~~ 170 (473)
|+++|+.. +...++..|+|++||+++.++..++..+|.+++++++.. ...+|||+.+.+. .....+.+++.+
T Consensus 126 GvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~ql----l~s~gWr~y~~Ln~Isl~s~~~a~~~a~ 200 (511)
T TIGR00806 126 SVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQL----LVTLGWISYSTLNIISLVFMTFSVFLAL 200 (511)
T ss_pred HHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhcCchhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999 999999999999999999999999999999999999554 2357899765443 333344455567
Q ss_pred cccCChhhHHhhCChHHHHHHHHHHhCCCCchH-HHHH-HHH-HHhhhhhcccchHHhhcccCchhHHHHHHHHHHhhcc
Q 012002 171 LVTDTPNSLIERGRFEEGKAVLRKIRGTDKIEP-EFLE-LVE-ASRIAKEVKHPFRNLLKRRNRPQLVIAVALQIFQQCT 247 (473)
Q Consensus 171 ~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (473)
++|..++.+..+++.+.......+.....+.+. +..+ .+. ....-+.....+++..+++. ++...+.+.....
T Consensus 201 ~LP~~~~sl~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~n~~----vl~WSlWwa~a~~ 276 (511)
T TIGR00806 201 FLKRPKRSLFFNRLEDVRGALPCELDQMVPGPGGKLEDYLGTCRDSFLVRMLSELVTIYRNPQ----LLLWSLWWVFNSA 276 (511)
T ss_pred hCCCCchhhhhccccccccccccccccCCCCCccccchhhhhhhhHHHHHHHHHHHHHhcCcc----hhhhhHHHHHHhh
Confidence 888777665554432110000000000000000 0000 000 00000111223333444444 5556666677777
Q ss_pred hhHHHHHhHHHHHHHcCCC-CcchHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHhHHhHHHHHHHHHHHHHHhhhhccC
Q 012002 248 GINAIMFYAPVLFKTLGFG-GSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKDH 326 (473)
Q Consensus 248 ~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (473)
+++.+.+|...+.++..-+ +.-.|..-++..+.+.+..+..|++-.++.+...+.++.....-+.+++...
T Consensus 277 g~~qv~~Y~Q~LW~~v~~~~~~yNG~veA~~tllga~~a~~ag~~~~~w~~~~~l~l~v~s~~~~gll~~m~-------- 348 (511)
T TIGR00806 277 GYYLITYYVHTLWGTLDESLNKYNGAVDAASTLLGAITSFIAGFVNIRWARWSKLLIAVVSAIQAGLVFWMS-------- 348 (511)
T ss_pred HHHHHHHHHHHHHHHcCCCccccCCHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHhhhhh--------
Confidence 8888888888887765332 2355667777778888888999998555543333333332222222222111
Q ss_pred CcccchhhHHHHHHHHHHHHHhhhccccccccccccccccccchhhhHHHHHHHHHHHHHHHHHH
Q 012002 327 SEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQA 391 (473)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (473)
...+.|...+...++...+..... +...-+++....+.-|...|+.+++..+-..+...+
T Consensus 349 ----~t~~Iw~~Y~~yvlf~~~y~flit-ia~~~iA~~L~~~~~aLvFGiNtfvAl~LQtilT~i 408 (511)
T TIGR00806 349 ----QSHDIWVLYVTYVLFRGIYQFLVP-IATFQIASSLSKELCALVFGINTFVATALKTIITAV 408 (511)
T ss_pred ----cccchHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcccceEEEEecHHHHHHHHHHheEEE
Confidence 333455555555555555554433 222333344455666888888777766655554433
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-27 Score=224.74 Aligned_cols=333 Identities=14% Similarity=0.063 Sum_probs=228.1
Q ss_pred ccCCCCCcccCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhH----HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 012002 17 QQGDDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRR----LTMLIAGIFFIAGVAFNVAAQNLAMLIVGRIL 92 (473)
Q Consensus 17 ~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~Dr~Grr----~~l~~~~~l~~i~~~~~~~~~~~~~l~~~r~l 92 (473)
..|...+++|.|..++|++.+++.++..++++++|+++||+||| +.+.++..+. .......++++|.+++.|++
T Consensus 26 ~l~~~l~~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~i~~~l 103 (382)
T PRK11128 26 FWSVWLKGQGYTPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLLF--AVAFWFGAHSFWLLFVAIGL 103 (382)
T ss_pred hHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHH--HHHHHHhcccHHHHHHHHHH
Confidence 33445567899999999999999999999999999999999984 3333332222 22334446889999999999
Q ss_pred HhhhhhhhhhhhhHHHhhcCCCCCchhhHHHHHHHHHHHHHHHHHHhhhccccCCccchHHHHHhhhHHHHHHHHHhhcc
Q 012002 93 LGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVGSLLV 172 (473)
Q Consensus 93 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~ 172 (473)
.|++.+...+...+++.++ +++|+++++......++|.++||++ .+.+.+++|||..|++.++..++..+..++.
T Consensus 104 ~g~~~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~l---gg~l~~~~g~~~~f~~~~~~~~~~~~~~~~~ 178 (382)
T PRK11128 104 FNLFFSPLVPLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSAL---TGKLVSWFGEQAILWILTAGVASMLLGQLLR 178 (382)
T ss_pred HHHHHcccccHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHH---HHHHHHHcChhHHHHHHHHHHHHHHHHHHcc
Confidence 9999998999888888876 3568888899999999999999999 5555666799999988776555444444444
Q ss_pred cCChhhHHhhCChHHHHHHHHHHhCCCCchHHHHHHHHHHhhhhhcccchHHhhcccCchhHHHHHHHHHHhhcchhHHH
Q 012002 173 TDTPNSLIERGRFEEGKAVLRKIRGTDKIEPEFLELVEASRIAKEVKHPFRNLLKRRNRPQLVIAVALQIFQQCTGINAI 252 (473)
Q Consensus 173 ~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (473)
||.++. ++.++ +.++...++++++|++. ++...+..++........
T Consensus 179 ~~~~~~----~~~~~--------------------------~~~~~~~~~~~i~~~~~----~~~~~~~~~l~~~~~~~~ 224 (382)
T PRK11128 179 PTIMPQ----GESRQ--------------------------QESAGWPAWKALLKEPT----VWRFLLCVSLLQGSHAAY 224 (382)
T ss_pred CCCCCc----ccccc--------------------------ccccccchHHHHHcChh----HHHHHHHHHHHHHHhHhH
Confidence 543210 00000 00011234567777765 444433333333444556
Q ss_pred HHhHHHHHHHcCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHhHHhHHHHHHHHHHHHHHhhhhccCCcccch
Q 012002 253 MFYAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKDHSEDLHT 332 (473)
Q Consensus 253 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (473)
..+.|.+.++.|.+..+.+.......++.++..++.+++.||+++|+.+..+.....+........ +
T Consensus 225 ~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~------------~- 291 (382)
T PRK11128 225 YGFSAIYWQAAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGST------------T- 291 (382)
T ss_pred HHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhh------------h-
Confidence 666677778899999889999888889999999999999999999999888877766665544332 1
Q ss_pred hhHHHHHHHHHHHHHhhhccccccccccccccccccchhhhHHHHHHH-HHHHHHHHHHHHHHHhhhhhhhHHHH
Q 012002 333 GFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCV-NLLFTFVIAQAFLSMLCHFKFGIFLF 406 (473)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (473)
..+......++.+..+... .+....+..+. +++++++..++.+.. ...|..++|.+.|.+.|..+...++.
T Consensus 292 -~~~~~~~~~~l~g~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g~~~~~~ 363 (382)
T PRK11128 292 -ALPWLIVIQILHCGTFTVC-HLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHLGAGVFWV 363 (382)
T ss_pred -hHHHHHHHHHHHHHHHHHH-HHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 2222233333333333322 23334555565 555678888887644 45677899999999999987654433
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.5e-27 Score=224.33 Aligned_cols=348 Identities=13% Similarity=0.100 Sum_probs=231.0
Q ss_pred cccCCCchhHHHHHHHHHHHHHHHHHHHHhhhhh-----hhHH-HHHHHHHHHHHHHHHHHHh---hhHHHHHHHHHHHh
Q 012002 24 YCKYDNQGLQLFTSSLYLAGLTATFFASYTTRRL-----GRRL-TMLIAGIFFIAGVAFNVAA---QNLAMLIVGRILLG 94 (473)
Q Consensus 24 ~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~Dr~-----Grr~-~l~~~~~l~~i~~~~~~~~---~~~~~l~~~r~l~G 94 (473)
+.|+|.+++|++..+... .+..+++|+++||+ |||| +++++.++.+++..+.++. .+++.+++..++.+
T Consensus 28 ~~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~ 105 (402)
T PRK11902 28 VEGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIAAMAFCPPHAALWPLAGLAVLVA 105 (402)
T ss_pred HcCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHH
Confidence 449999999999777776 69999999999999 8875 7888888888888887776 45788888888889
Q ss_pred hhhhhhhhhhhHHHhhcCCCCCchhhHHHHHHHHHHHHHHHHHHhhhccccCCc-cchHHHHHhhhHHHHHHHHHhhccc
Q 012002 95 CGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTSHIKSQ-WGWRISLGLAGIPAALLTVGSLLVT 173 (473)
Q Consensus 95 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~-~~wr~~f~~~~~~~~~~~~~~~~~~ 173 (473)
+..+...+...+++.|++|++||+++.++...+.++|.++++.++. .+.+. .|||..|++.++..++..+..+++|
T Consensus 106 ~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~---~l~~~~~gw~~~f~i~a~~~l~~~l~~~~~~ 182 (402)
T PRK11902 106 FLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLAL---WLADRVLGWGNTYLLMAGLMLAGALTTLWAP 182 (402)
T ss_pred HHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHH---HHHhcccCHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999998843 34443 4899999998888776665556677
Q ss_pred CChhhHHhhCChHHHHHHHHHHhCCCCchHHHHHHHHHHhhhhhcccchHHhhcccCchhHHHHHHHHHHhhcchhHHHH
Q 012002 174 DTPNSLIERGRFEEGKAVLRKIRGTDKIEPEFLELVEASRIAKEVKHPFRNLLKRRNRPQLVIAVALQIFQQCTGINAIM 253 (473)
Q Consensus 174 e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (473)
|+++.. ++.++. .++..+++++++|++..+.......+..... .....
T Consensus 183 e~~~~~---~~~~~~--------------------------~~~~~~~~~~l~~~~~~~~~l~~~~l~~~~~---~~~~~ 230 (402)
T PRK11902 183 EPEVPA---RPPRSL--------------------------GEAVVGPLRDFFSRRGAWALLLLIVLYKLGD---AFAGS 230 (402)
T ss_pred CCcccc---cccchh--------------------------HHHHHHHHHHHHhCcCHHHHHHHHHHHHhHH---HHHHH
Confidence 754210 000000 0001224556677766333222222211111 11112
Q ss_pred HhHHHHHHHcCCCCcchHHHHHHHH-HHHHHHHHHHHHHHhhcCcchhHhHHhHHHHHHHHHHHHHHhhhhccCCcccch
Q 012002 254 FYAPVLFKTLGFGGSASLYSTVITG-AVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKDHSEDLHT 332 (473)
Q Consensus 254 ~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (473)
...+++.++.|+++.+.+......+ ++.+++.++.+++.||+++|+.+..+.....+..+.+..... ..
T Consensus 231 ~~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~----------~~ 300 (402)
T PRK11902 231 LSTTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAV----------TP 300 (402)
T ss_pred HHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh----------cC
Confidence 2334455668999988888876554 468899999999999999998877666555444433322111 11
Q ss_pred hhHHHHHHHHH---HHHHhhhccccccccccccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHH
Q 012002 333 GFAVLVVIMIC---TFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHFKFGIFLFFSG 409 (473)
Q Consensus 333 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (473)
...+....... +..+............++.+.+|.+. .++.+....++...++.+.|.+.|..|+...+...+
T Consensus 301 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~G~l~~~~G~~~~f~~~~ 376 (402)
T PRK11902 301 KHLWTMALAIGIENLCGGMGTAAFVALLMALCNRSFSATQ----YALLSALASVGRVYVGPTSGYLVEAYGWPGFYLMTV 376 (402)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHH
Confidence 11122222211 12222222222344555666666544 455555666777767778999999999887777777
Q ss_pred HHHHHHHHHHhhc
Q 012002 410 WVLIMSCFVFFLL 422 (473)
Q Consensus 410 ~~~~~~~~~~~~~ 422 (473)
++.+.+.+.....
T Consensus 377 ~~~~~~~~~~~~~ 389 (402)
T PRK11902 377 VIALPGLALLWLM 389 (402)
T ss_pred HHHHHHHHHHHHH
Confidence 6666665555433
|
|
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.1e-29 Score=237.94 Aligned_cols=382 Identities=18% Similarity=0.211 Sum_probs=280.9
Q ss_pred CCCCCcccCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH-HHHHhhhh
Q 012002 19 GDDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVAAQNLAMLIVG-RILLGCGV 97 (473)
Q Consensus 19 ~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~l~~i~~~~~~~~~~~~~l~~~-r~l~G~~~ 97 (473)
+++.++++-+.++++|+.++....+.+..++.+.+.||+|.|++.++|.++.+++.++.++++++|++++. -++.|+|.
T Consensus 70 ~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~v~~~g~~lssF~~~i~~l~lt~gvi~G~G~ 149 (509)
T KOG2504|consen 70 EELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGLVAALGLLLSSFATSLWQLYLTFGVIGGLGL 149 (509)
T ss_pred HHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhccc
Confidence 45677889999999999999999999999999999999999999999999999999999999999988886 69999999
Q ss_pred hhhhhhhhHHHhhcCCCCCchhhHHHHHHHHHHHHHHHHHHhhhccccCCccchHHHHHhhhHHHHHHHHHhhcccC-Ch
Q 012002 98 GFANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVGSLLVTD-TP 176 (473)
Q Consensus 98 ~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e-~p 176 (473)
|+.+......+..||+ |+|+.+.|+..++.++|.++-|.+ ...+.+.+|||+.+++.+.+.+-..+....+++ ++
T Consensus 150 ~~~~~paiviv~~YF~-kkR~lA~Gia~~GsG~G~~~~~~l---~~~l~~~~G~r~~~l~~~~~~l~~~~~~~~~rp~~~ 225 (509)
T KOG2504|consen 150 GLIYLPAVVILGTYFE-KKRALATGIAVSGTGVGTVVFPPL---LKYLLSKYGWRGALLIFGGISLNVLVAGALLRPLSP 225 (509)
T ss_pred hhhhcchhhhhhhHhH-HHHHHHHhhhhccCCcceeeHHHH---HHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCCCCc
Confidence 9999999999998885 669999999999999999999999 888888899999999998888666655444333 22
Q ss_pred hhHHhhCChHHH-HHHH--------HHHhCCC-Cch----HHHHHHHHHHhhhh--hcccch----HHhhcccCchhHHH
Q 012002 177 NSLIERGRFEEG-KAVL--------RKIRGTD-KIE----PEFLELVEASRIAK--EVKHPF----RNLLKRRNRPQLVI 236 (473)
Q Consensus 177 ~~~~~~~~~~~~-~~~~--------~~~~~~~-~~~----~~~~~~~~~~~~~~--~~~~~~----~~~~~~~~~~~~~~ 236 (473)
+......++.+. .+.. +.....+ ... ......++..++.+ ..+... .++++++. ++
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ll~~~~----fl 301 (509)
T KOG2504|consen 226 PKKPNEEKDLRNSAASVESTPKPVELRISERDSGLKKLSLSNLATLKRGPDKWRNSPLQAFLSMLDLSLLKDPK----FL 301 (509)
T ss_pred CCCchhhhhhccccccccccccccccccccCCCCCCcccccchhhhhhCCccccccchhhhhhhhhHHHHcCch----HH
Confidence 111110000000 0000 0000000 000 00000111001001 111111 35666654 88
Q ss_pred HHHHHHHhhcchhHHHHHhHHHHHHHcCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCcch--hHhHHhHHHHHHHHH
Q 012002 237 AVALQIFQQCTGINAIMFYAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRM--LLLEAGIQMFLSQTV 314 (473)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~--~~~~~~~~~~~~~~~ 314 (473)
.+.+...+...++.....++|.+.++.|++..++..+.++.++..++++++.|++.|+...++ ...++.+..+++.+.
T Consensus 302 ~~~~~~~~~~~g~~~p~~~l~~~~~~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~~~ 381 (509)
T KOG2504|consen 302 LLALSNLFAYLGFNVPFVYLPSYAKSLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLARLF 381 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHH
Confidence 888888888889999999999999999999999999999999999999999999999987433 334444444444422
Q ss_pred HHHHHhhhhccCCcccchhhHHHHHHHHHHHHHhhhccccccccccccccccccchhhhHHHHHHHHHHHHHHHHHHHHH
Q 012002 315 IAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLS 394 (473)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (473)
.... .....+...+.+.+........+...++.|+.+.+.-..+.|+...+..++..++|++.|.
T Consensus 382 ~p~~---------------~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~ 446 (509)
T KOG2504|consen 382 LPFA---------------TTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGL 446 (509)
T ss_pred HHHh---------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCccccee
Confidence 2221 2223333444444444444444555677899999999999999999999999999999999
Q ss_pred Hhhhhh-hhHHHHHHHHHHHHHHHHHhhcc
Q 012002 395 MLCHFK-FGIFLFFSGWVLIMSCFVFFLLP 423 (473)
Q Consensus 395 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 423 (473)
+.|..+ |...+.+++++.+.+..+++..+
T Consensus 447 ~~d~tg~Y~~~f~~~g~~~~~s~~~~~~~~ 476 (509)
T KOG2504|consen 447 LYDITGNYDHAFYFCGLCFLLSAVLLLILR 476 (509)
T ss_pred eeeccCCeeeehhhcChHHHHHHHHHHHhH
Confidence 999887 78888888888888887777776
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.8e-28 Score=224.44 Aligned_cols=327 Identities=14% Similarity=0.111 Sum_probs=222.4
Q ss_pred ccCCCCCcccCCCchhHHHHHHHHHHHHHHHHHHHHhhhhh-----hhHHH-HHHHHHHHHHHHHHHHHh---hhHHHHH
Q 012002 17 QQGDDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRRL-----GRRLT-MLIAGIFFIAGVAFNVAA---QNLAMLI 87 (473)
Q Consensus 17 ~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~Dr~-----Grr~~-l~~~~~l~~i~~~~~~~~---~~~~~l~ 87 (473)
..|.+.+|+|+|.+++|+..+. .+...+ .+++|+++||+ ||||. ++.+.++.+++....++. .+.+.+.
T Consensus 10 ~~~~~~~~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~~~~l~~l~ 87 (356)
T TIGR00901 10 TLPYWLRSKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVPSTDLPLLA 87 (356)
T ss_pred HHHHHHHHcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCcchhHHHHH
Confidence 3445667789999999999766 455555 89999999998 89886 567788888887777777 5667778
Q ss_pred HHHHHHhhhhhhhhhhhhHHHhhcCCCCCchhhHHHHHHHHHHHHHHHHHHhhhccccCCccc--------hHHHHHhhh
Q 012002 88 VGRILLGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTSHIKSQWG--------WRISLGLAG 159 (473)
Q Consensus 88 ~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~--------wr~~f~~~~ 159 (473)
...++.+++.+...+...+++.|++|+++|+++.++...+.++|.++++.++.. +.++.+ ||..|++.+
T Consensus 88 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~---l~~~~g~~~~~~~~wr~~f~i~a 164 (356)
T TIGR00901 88 GLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALV---LASPEFANTGLITLWGYIFFWTA 164 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHH---HhhhcccccccccccHHHHHHHH
Confidence 888899999999999999999999999999999999999999999999998543 333344 999999999
Q ss_pred HHHHHHHHHhhc-ccCChhhHHhhCChHHHHHHHHHHhCCCCchHHHHHHHHHHhhhhhcccchHHhhcccCchhHHHHH
Q 012002 160 IPAALLTVGSLL-VTDTPNSLIERGRFEEGKAVLRKIRGTDKIEPEFLELVEASRIAKEVKHPFRNLLKRRNRPQLVIAV 238 (473)
Q Consensus 160 ~~~~~~~~~~~~-~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (473)
+..++..+..++ .||+++. +++ ++ ++ .++.+.+++++++++..++ ++..
T Consensus 165 i~~l~~~~~~~~~~~e~~~~---~~~-~~---------------~~----------~~~~~~~~~~~~~~~~~~~-~~~~ 214 (356)
T TIGR00901 165 LLILPGLLVTLFLAKEPQED---ASV-PK---------------PL----------TQAVLKPIREFFQRKNMIQ-ALLL 214 (356)
T ss_pred HHHHHHHHHHHHhccCCCcc---ccc-ch---------------hH----------HHHHHHHHHHHHHhcCchH-HHHH
Confidence 887776655443 4664211 000 00 00 0001223455566554333 3333
Q ss_pred HHHHHhhcchhHHHHHhHHHHHHHcCCCCcchHHHHHHHH-HHHHHHHHHHHHHHhhcCcchhHhHHhHHHHHHHHHHHH
Q 012002 239 ALQIFQQCTGINAIMFYAPVLFKTLGFGGSASLYSTVITG-AVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAI 317 (473)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~ 317 (473)
.+..++....+.....+.|.++++.|+++.+.+......+ +..+++.++++++.||+|+|+.+..+.++..+...+...
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~ 294 (356)
T TIGR00901 215 LLLIVLYKLGDSAATVLTTLFLLDMGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIVQALTNAGFVW 294 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344455566777888888779999999888777665 577899999999999999999988777766665544433
Q ss_pred HHhhhhccCCcccchhhHHHHHHHHHHHHHhhhccccccccccccccccccchhhhHHHHHHHHH
Q 012002 318 ILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNL 382 (473)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 382 (473)
... ..+..+ ......+...... +..........+...++..|.+|++.||+.+|+.+...+
T Consensus 295 ~~~--~~~~~~-~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~ 355 (356)
T TIGR00901 295 LAS--NGHHDG-ITFPHLLMLFLTI-TLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLSA 355 (356)
T ss_pred HHh--cCcccc-cccchHHHHHHHH-HHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence 211 000000 0001122222222 222222223334567788999999999999999887654
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.4e-27 Score=224.14 Aligned_cols=356 Identities=14% Similarity=0.032 Sum_probs=214.4
Q ss_pred CCCCCcccCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHH---Hhhh-----HHHHHHHH
Q 012002 19 GDDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNV---AAQN-----LAMLIVGR 90 (473)
Q Consensus 19 ~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~l~~i~~~~~~---~~~~-----~~~l~~~r 90 (473)
..+++++|+|..+.|++.+++.+++.++++++|+++||+|||++++++..+.+++..... .++. .....+++
T Consensus 35 ~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (420)
T PRK09528 35 IWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIISGLLVLFGPFFIYVFAPLLQYNILLGAIVGG 114 (420)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667899999999999999999999999999999999999999887766655443221 1111 11122334
Q ss_pred HHHhhhhhhhhhhhhHHHhhcCCCCCchhhHHHHHHHHHHHHHHHHHHhhhccccCCccchHHHHHhhhHHHHHHHHHhh
Q 012002 91 ILLGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVGSL 170 (473)
Q Consensus 91 ~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~ 170 (473)
++.|.+.....+....+..+ . .+++++.++......++|..++|+++.... + .+|++.|++.+++.++..++.+
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~-~-~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~---~-~~~~~~f~~~~~~~~~~~~~~~ 188 (420)
T PRK09528 115 IYLGFGFLAGAGAIEAYIER-V-SRRSGFEYGRARMWGSLGWALCAFIAGILF---N-INPQINFWLGSGSALILLVLLF 188 (420)
T ss_pred HHhhhhhccchhhhhhHHHH-H-HhhccccchhhHHhhhHHHHHHHHHHHHHH---h-cCchHhHHHHHHHHHHHHHHHh
Confidence 44443333333333333322 2 345677888888888999999999855443 2 4799999998888777666655
Q ss_pred cccCChhhHHhhCChHHHHHHHHHHhCCCCchHHHHHHHHHHhhhhhcccchHHhhcccCchhHHHHHHHHHHhhcchhH
Q 012002 171 LVTDTPNSLIERGRFEEGKAVLRKIRGTDKIEPEFLELVEASRIAKEVKHPFRNLLKRRNRPQLVIAVALQIFQQCTGIN 250 (473)
Q Consensus 171 ~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (473)
+++++++....+.+.++ .++++...+..++.+|++..+...+. .+.....+.
T Consensus 189 ~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~l~~~~~~~l~l~----~~~~~~~~~ 240 (420)
T PRK09528 189 FAKPDAPSTAKVANALG------------------------ANASAVSLKDALALLKLPKFWFLVLY----VIGVACFYD 240 (420)
T ss_pred cccccccchhhhccchh------------------------cccccccHHHHHHHccCCCeEeehHH----HHHHHHHHH
Confidence 54332211000000000 00000011123345555553322221 111122223
Q ss_pred HHHHhHHHHHHH----cCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHhHHhHHHHHHHHHHHHHHhhhhccC
Q 012002 251 AIMFYAPVLFKT----LGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKDH 326 (473)
Q Consensus 251 ~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (473)
....+.|.+..+ .+.+..+.+...+...+...++.++.|++.||+++|+.+..+..+..+...+..+.
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~-------- 312 (420)
T PRK09528 241 VFDQQFPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFA-------- 312 (420)
T ss_pred HHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhc--------
Confidence 333344444432 35565677888888888999999999999999999999888777766665554432
Q ss_pred CcccchhhHHHHHHHHHHHHHhhhccccccccccccccccccchhhhHHH-HHHHHHHHHHHHHHHHHHHhhhhhhhHHH
Q 012002 327 SEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSV-TVCVNLLFTFVIAQAFLSMLCHFKFGIFL 405 (473)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (473)
++ .+.......+...... ...+....+..|.+|++.+++..+. .+....+|..+++.+.|.+.|..|+...+
T Consensus 313 ----~~--~~~~~~~~~l~g~~~~-~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f 385 (420)
T PRK09528 313 ----TG--PLEVSILKLLHAFEVP-FLLVGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTY 385 (420)
T ss_pred ----cc--HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHH
Confidence 11 1222221222221111 1112334566788899998887765 56778899999999999999988877666
Q ss_pred HHHHHHHHH-HHHHHhhcc
Q 012002 406 FFSGWVLIM-SCFVFFLLP 423 (473)
Q Consensus 406 ~~~~~~~~~-~~~~~~~~~ 423 (473)
...+++.++ .++..+..+
T Consensus 386 ~~~~~~~~i~~~~~~~~~~ 404 (420)
T PRK09528 386 LILGGIVLLFTLISVFTLS 404 (420)
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 654444443 333333333
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=1e-26 Score=249.31 Aligned_cols=325 Identities=11% Similarity=-0.017 Sum_probs=221.7
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHH---HhhhHHHHHHHHHHHhhhhhhhhhhhh
Q 012002 29 NQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNV---AAQNLAMLIVGRILLGCGVGFANQAVP 105 (473)
Q Consensus 29 ~~~~~~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~l~~i~~~~~~---~~~~~~~l~~~r~l~G~~~~~~~~~~~ 105 (473)
....+++.+++.+++.++++++|+++||+|||++++++.++.+++.+++. .+++++.++++|+++|++.+...++..
T Consensus 46 ~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~ 125 (1146)
T PRK08633 46 VILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYLGWFWLAFAVTFLLGAQSAIYSPAKY 125 (1146)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhhchHHH
Confidence 34579999999999999999999999999999999998877666555543 457899999999999999999999999
Q ss_pred HHHhhcCCCCCchhhHHHHHHHHHHHHHHHHHHhhhccccC-----C-ccchHHHHHhhhHHH-HHHHHHhhcccCChhh
Q 012002 106 LFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTSHIK-----S-QWGWRISLGLAGIPA-ALLTVGSLLVTDTPNS 178 (473)
Q Consensus 106 ~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~-----~-~~~wr~~f~~~~~~~-~~~~~~~~~~~e~p~~ 178 (473)
+++.|++|+++|++++++...+.++|.++|++++..+.... + ..+|++.+.+..+.. ++.+++.+.+||+|+.
T Consensus 126 ~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (1146)
T PRK08633 126 GIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFESVNGNTPSEILGRIAPAGLVLLAVAVLGLIFAYRLPKVPAA 205 (1146)
T ss_pred hhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccchHHHHHHHHHHHHHHHHHHhcCcCCCCC
Confidence 99999999999999999999999999999999966544320 0 123444444443333 3333345567776632
Q ss_pred HHhhCChHHHHHHHHHHhCCCCchHHHHHHHHHHhhhhhcccchHHhhcccCchhHHHHHHHHHHhhcchhHHHHHhHHH
Q 012002 179 LIERGRFEEGKAVLRKIRGTDKIEPEFLELVEASRIAKEVKHPFRNLLKRRNRPQLVIAVALQIFQQCTGINAIMFYAPV 258 (473)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (473)
...+.+.++ . ...+.....++.+++++. ++...+..++..........+.|.
T Consensus 206 ~~~~~~~~~--------------~----------~~~~~~~~~~~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 257 (1146)
T PRK08633 206 APEVFDKKK--------------Y----------LFPKLLWRNLKLLRSDRV----LWLAIIGLSYFWFISQLAQANFPA 257 (1146)
T ss_pred Ccccccccc--------------c----------ccHHHHHHHHHHHhcCcH----HHHHHHHHHHHHHHHHHHHHhhHH
Confidence 111000000 0 000001123444555544 333333333333334445556666
Q ss_pred HHH-HcCCCCc-chHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHhHHhHHHHHHHHHHHHHHhhhhccCCcccchhhHH
Q 012002 259 LFK-TLGFGGS-ASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKDHSEDLHTGFAV 336 (473)
Q Consensus 259 ~~~-~~g~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (473)
++. .+|++.. ..+++.+...++.+++.++.+++.||+++++.+.++.++.+++.+++... . ..+
T Consensus 258 ~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~------------~--~~~ 323 (1146)
T PRK08633 258 YAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTA------------P--SLA 323 (1146)
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHh------------h--hHH
Confidence 664 4899988 88999999999999999999999999999888877766666655554432 1 122
Q ss_pred HHHHHHHHHHHhhhccccccccccccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 012002 337 LVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSML 396 (473)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (473)
..++..++++.+.. ...+...+++.+..|++.||+++|+.+.+..++..+++.+.+.+.
T Consensus 324 ~~~~~~~~~g~~~~-~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~ 382 (1146)
T PRK08633 324 SVLVLFFLFGFSAG-LFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFS 382 (1146)
T ss_pred HHHHHHHHHHHHHH-HhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222222222222 222344567788999999999999999999998877776665543
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.7e-26 Score=203.00 Aligned_cols=353 Identities=12% Similarity=0.114 Sum_probs=266.2
Q ss_pred hHhhhhccccCCCCCcccCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHH---HhhhHHH
Q 012002 9 FPVVYRRTQQGDDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNV---AAQNLAM 85 (473)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~l~~i~~~~~~---~~~~~~~ 85 (473)
+.+..++.+.|.+++.++++..+.+++...++.+|.+.+++.|++.+|+|+|+.+++|+.++++++.+.. ...+|..
T Consensus 27 ~~~~l~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~pAa~~~~y~~ 106 (422)
T COG0738 27 FITCLNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPAASSKSYGF 106 (422)
T ss_pred HHhhcchhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHH
Confidence 3566778899999999999999999999999999999999999999999999999999999999999985 5678999
Q ss_pred HHHHHHHHhhhhhhhhhhhhHHHhhcCCCCCchhhHHHHHHHHHHHHHHHHHHhhhcccc---------------C-Ccc
Q 012002 86 LIVGRILLGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTSHI---------------K-SQW 149 (473)
Q Consensus 86 l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~---------------~-~~~ 149 (473)
++++-++.|.|.+...+..+.++....++++..+.+++.+..+++|.+++|+++..+-.- . +.-
T Consensus 107 FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~~~~~~~~~~~~~~~~~~ 186 (422)
T COG0738 107 FLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILSGVALTMSAAQILAIKGADAS 186 (422)
T ss_pred HHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhccCHHHHHHHHHHHHH
Confidence 999999999999999999999999999998888999999999999999999995543220 0 012
Q ss_pred chHHHHHhhhHHHHHHHHHhhc--ccCChhhHHhhCChHHHHHHHHHHhCCCCchHHHHHHHHHHhhhhhcccchHHhhc
Q 012002 150 GWRISLGLAGIPAALLTVGSLL--VTDTPNSLIERGRFEEGKAVLRKIRGTDKIEPEFLELVEASRIAKEVKHPFRNLLK 227 (473)
Q Consensus 150 ~wr~~f~~~~~~~~~~~~~~~~--~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (473)
.||++|...+...+++.+.... .|+.+.. +.+..+..+....++++
T Consensus 187 ~v~~pYl~~~~~lvll~v~~~~~k~p~~~~~--------------------------------~~~~~~~~~~~~~~l~~ 234 (422)
T COG0738 187 SVQFPYLILAGLLVLLAVLILLSKLPDLQVA--------------------------------APSLGASGSAGLSSLFQ 234 (422)
T ss_pred hhhhHHHHHHHHHHHHHHHHHhccCCcCCcc--------------------------------cccccccccchHHHHHh
Confidence 4888888888777666665443 3432210 00001111114566777
Q ss_pred ccCchhHHHHHHHHHHhhcchhHHHHHhHHHHHHH-cCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHhHHhH
Q 012002 228 RRNRPQLVIAVALQIFQQCTGINAIMFYAPVLFKT-LGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGI 306 (473)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~ 306 (473)
++. +....+..+++.........|.+.++.+ .|.+..++....+....+.++|++++.++..|+...|.+.+...
T Consensus 235 ~~~----~~~gvl~~FlYVG~Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~~k~Laf~a~ 310 (422)
T COG0738 235 NKH----LRLGVLAIFLYVGAEVAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRIKPEKYLAFYAL 310 (422)
T ss_pred ChH----HHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 776 6677777788888888888899988877 89999999999999999999999999999999999999887766
Q ss_pred HHHHHHHHHHHHHhhhhccCCcccchhhHHHHHHHHHHHHHhhhccccccccccccccccccchhhhHHHHHHHHHHHHH
Q 012002 307 QMFLSQTVIAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTF 386 (473)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 386 (473)
...+.++...+. +. ...+.. ....+.+.....|..++...+..| ++ ....|........|++
T Consensus 311 ~~ill~~~~~l~------------~g---~v~~~~-l~~ig~F~simfPTIfslal~~l~-~~-ts~~s~~l~maivGGA 372 (422)
T COG0738 311 IAILLLLAVALI------------GG---VVALYA-LFLIGLFNSIMFPTIFSLALKNLG-EH-TSVGSGLLVMAIVGGA 372 (422)
T ss_pred HHHHHHHHHHHh------------cC---hHHHHH-HHHHHHHhHHHHHHHHHHHHhccC-cc-ccccceeeeeheecch
Confidence 555555555443 22 112222 222233333444666777778778 33 3333445556667999
Q ss_pred HHHHHHHHHhhhhhhhHHHH-HHHHHHHHH
Q 012002 387 VIAQAFLSMLCHFKFGIFLF-FSGWVLIMS 415 (473)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 415 (473)
+.|++.|++.|+.+...... ....|.+..
T Consensus 373 iiP~l~G~i~d~~g~~~~~~~~pllc~lyV 402 (422)
T COG0738 373 IIPPLQGVIADMFGIQLTFLIVPLLCYLYV 402 (422)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 99999999999987654443 333444333
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.7e-27 Score=225.72 Aligned_cols=337 Identities=16% Similarity=0.122 Sum_probs=227.3
Q ss_pred ccCCCCCcccCCCchhHHHHHHHHHHHHHHHHHHHHhhhh----hhh-HHHHHHHHHHHHHHHHHHHHhhh------HHH
Q 012002 17 QQGDDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRR----LGR-RLTMLIAGIFFIAGVAFNVAAQN------LAM 85 (473)
Q Consensus 17 ~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~Dr----~Gr-r~~l~~~~~l~~i~~~~~~~~~~------~~~ 85 (473)
..+...+++|+++.++|++.++..+..++..|+.|+++|| +|| |+.++.+....+++.+++.+.++ .+.
T Consensus 22 l~~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 101 (437)
T TIGR00792 22 LLFFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPDFSATGKLVY 101 (437)
T ss_pred HHHHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCCCCcchHHHH
Confidence 3344566789999999999999999999999999999997 677 45677888888888888877654 456
Q ss_pred HHHHHHHHhhhhhhhhhhhhHHHhhcC-CCCCchhhHHHHHHHHHHHHHHHHHHhhhc-ccc---CCccchHHHHHhhhH
Q 012002 86 LIVGRILLGCGVGFANQAVPLFLSEIA-PTRIRGGLNILFQLNVTIGILFANLVNYGT-SHI---KSQWGWRISLGLAGI 160 (473)
Q Consensus 86 l~~~r~l~G~~~~~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~-~~~---~~~~~wr~~f~~~~~ 160 (473)
+++.+++.+++.+...+...++..|.. +++||++..++.+.+..+|..+++.+.... ..+ .+..+||+.+.+.++
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~~~ 181 (437)
T TIGR00792 102 AYITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALVLAL 181 (437)
T ss_pred HHHHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHHHH
Confidence 777889999999888888888999987 468899999999888888877765553222 111 235689999999998
Q ss_pred HHHHHHHH-hhcccCChhhHHhhCChHHHHHHHHHHhCCCCchHHHHHHHHHHhhhhhcccchHHhhcccCchhHHHHHH
Q 012002 161 PAALLTVG-SLLVTDTPNSLIERGRFEEGKAVLRKIRGTDKIEPEFLELVEASRIAKEVKHPFRNLLKRRNRPQLVIAVA 239 (473)
Q Consensus 161 ~~~~~~~~-~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (473)
+.++..++ .++.+|.++. +.++ ++++.+..+.++.+++++. ++...
T Consensus 182 l~~~~~~~~~~~~~e~~~~-----~~~~------------------------~~~~~~~~~~~~~l~~~~~----~~~~~ 228 (437)
T TIGR00792 182 IGVVSLIICFFGTKERYSE-----IPKN------------------------IEKKLSLKQIFKALFKNDQ----LLILC 228 (437)
T ss_pred HHHHHHHHHHcCCEecCCC-----CCcc------------------------cccCCCHHHHHHHHhCCHH----HHHHH
Confidence 88777665 4456665410 0000 0000001123344555544 33333
Q ss_pred HHHHhhcchhHHHHHhHHHHHHH-cCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHhHHhHHHHHHHHHHHHH
Q 012002 240 LQIFQQCTGINAIMFYAPVLFKT-LGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAII 318 (473)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (473)
+..++..........+.+++.+. .+ ++...+.......++.+++.++.+++.||+|+|+.+..+..+..++.+.....
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~ 307 (437)
T TIGR00792 229 LAYLFYNLAFNIKNGVQVYYFTYVLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFA 307 (437)
T ss_pred HHHHHHHHHHHHHcchhheeEeeecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHc
Confidence 33443334444444445555543 34 44556667777789999999999999999999999888877666655544331
Q ss_pred HhhhhccCCcccchhhHHHHHHHHHHHHHhhhcccccccccccccccc-------ccchhhhHHHHHHHHHHHHHHHHHH
Q 012002 319 LGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFP-------LETRSAGQSVTVCVNLLFTFVIAQA 391 (473)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (473)
+ ...+.......+...+ .....+..+++.+|..+ ++.+|.+.|+.+....++..+++.+
T Consensus 308 ------------~-~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i 373 (437)
T TIGR00792 308 ------------G-SNLPLILVLIILAGFG-QNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFL 373 (437)
T ss_pred ------------c-hhHHHHHHHHHHHHHH-HHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHH
Confidence 1 1112222222222222 22223445566667654 4567999999999999999999999
Q ss_pred HHHHhhhhhh
Q 012002 392 FLSMLCHFKF 401 (473)
Q Consensus 392 ~~~~~~~~~~ 401 (473)
.|.+.+..|+
T Consensus 374 ~g~ll~~~G~ 383 (437)
T TIGR00792 374 VGLILGIIGY 383 (437)
T ss_pred HHHHHHHcCC
Confidence 9999876554
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2e-27 Score=207.17 Aligned_cols=337 Identities=15% Similarity=0.066 Sum_probs=246.8
Q ss_pred CCcccCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhh
Q 012002 22 SNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVAAQNLAMLIVGRILLGCGVGFAN 101 (473)
Q Consensus 22 ~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~l~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~ 101 (473)
+.+.+-+++++|++.+.+.+.+.+.+++.|.+.||+|+|-.+++|.+++..+++++++.++|+.++++|.+||+|.+...
T Consensus 98 ~~~~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA~~~ 177 (464)
T KOG3764|consen 98 AISLDRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSAFAD 177 (464)
T ss_pred ccCccccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHHHHH
Confidence 45667788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHHHhhcCCCCC-chhhHHHHHHHHHHHHHHHHHHhhhccccCCccchHHHHHhhhHHHHHHHHHhhcccCChhhHH
Q 012002 102 QAVPLFLSEIAPTRI-RGGLNILFQLNVTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVGSLLVTDTPNSLI 180 (473)
Q Consensus 102 ~~~~~~i~~~~~~~~-r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~ 180 (473)
++..++++|.+|+++ |++++|+.-.+.++|..+||+. .+.+.+..|.+.+|.+.+++.++...+.+++-|..+
T Consensus 178 tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpf---GGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi~p~~--- 251 (464)
T KOG3764|consen 178 TSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPF---GGILYEFAGKSAPFLVLAIVLLLDGALQLLVIEPTE--- 251 (464)
T ss_pred hhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCc---ccchHhhcCCcCcHHHHHHHHHHHHHHHHheeCccc---
Confidence 999999999998654 8999999999999999999999 555666678999999999999998888666544210
Q ss_pred hhCChHHHHHHHHHHhCCCCchHHHHHHHHHHhhhhhcccchHHhhcccCchhHHHHHHHHHHhhcchhHHHHHhHHHHH
Q 012002 181 ERGRFEEGKAVLRKIRGTDKIEPEFLELVEASRIAKEVKHPFRNLLKRRNRPQLVIAVALQIFQQCTGINAIMFYAPVLF 260 (473)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (473)
.++++..+..+++++++++. ++.................--++.++
T Consensus 252 ------------------------------~~~~~~~~~~~~~~Ll~dP~----I~~~agai~~~n~~lafLePtlslwm 297 (464)
T KOG3764|consen 252 ------------------------------MDPDSTEQGTPMWSLLMDPY----ILLIAGAITFSNSSLAFLEPTLSLWM 297 (464)
T ss_pred ------------------------------cCccccccCccHHHHHhCch----HhhhhcchhhccchHHHhCcccHHHH
Confidence 00012233556788888877 44444433333333333333444544
Q ss_pred -HHcCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCcch--hHhHHhHHHHHHHHHHHHHHhhhhccCCcccchhhHHH
Q 012002 261 -KTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRM--LLLEAGIQMFLSQTVIAIILGIKVKDHSEDLHTGFAVL 337 (473)
Q Consensus 261 -~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (473)
+++.-+.-+.|+.+....+...++..+.|.+.||++..+ ....+.+..+.+.....+.. .....+.
T Consensus 298 ~e~m~~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~~~~~wl~~~~gl~~~G~~~~~iP~~~-----------~~~~L~v 366 (464)
T KOG3764|consen 298 LETMFTPGWEVGLAFLPASLSYAIGTNLFGKLADKYPHLRWLLSLGGLATVGVSSGPIPFAT-----------SIAQLWV 366 (464)
T ss_pred HHhccCCCcceeeeecccccchhccCchHHHHHHhcCchhHHHHHHHHHHHHHHhchhHhhh-----------hHHHHhh
Confidence 446644448899999999999999999999999999433 33333333333333333321 1122333
Q ss_pred HHHHHHHHHHhhhcccccccccccccccccc---chhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHH
Q 012002 338 VVIMICTFISAFAWSWGPLGWLIPSETFPLE---TRSAGQSVTVCVNLLFTFVIAQAFLSMLCHFKFGIFLFFSGW 410 (473)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (473)
.....++..........|....+ .+.-..+ .-|..+++......++.+++|.+.|.+.+..|+.+.....++
T Consensus 367 p~~~l~~~i~~~dasl~P~l~~l-vd~rh~s~~~vYGsVyaIad~a~sla~a~GP~~gg~iv~~iGF~wl~~iig~ 441 (464)
T KOG3764|consen 367 PNFGLGFGIGLADASLIPTLGYL-VDPRHVSGFNVYGSVYAIADAAFSLAYAIGPTFGGSLVEAIGFEWLMTIIGI 441 (464)
T ss_pred hhHHHHHHHHHHHHHHhhhhHHh-cchhhccccceeeeHHHHHHHHHHHhhhccccccchheeehhHHHHHHHHHH
Confidence 33334444444444444443322 2333333 668999999999999999999999999999887654443333
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.7e-26 Score=246.58 Aligned_cols=333 Identities=12% Similarity=0.014 Sum_probs=228.2
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHH---HHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhhhhhhH
Q 012002 30 QGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLI---AGIFFIAGVAFNVAAQNLAMLIVGRILLGCGVGFANQAVPL 106 (473)
Q Consensus 30 ~~~~~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~---~~~l~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~ 106 (473)
...++..+++.+.+.++++++|+++||+|||+++.. +.++..+..+.+...+++++++++|+++|++.+...|+..+
T Consensus 52 ~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~gi~~a~~~p~~~a 131 (1140)
T PRK06814 52 ALVTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFHLNSVPLLFAALFLMGIHSALFGPIKYS 131 (1140)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhchHHHH
Confidence 457888999999999999999999999999997633 33333333344444589999999999999999999999999
Q ss_pred HHhhcCCCCCchhhHHHHHHHHHHHHHHHHHHhhhccccCCccchHHHHHhhhHHHHHHHHHhhcccCChhhHHhhCChH
Q 012002 107 FLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVGSLLVTDTPNSLIERGRFE 186 (473)
Q Consensus 107 ~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~ 186 (473)
++.+++++++|++++++.+++.++|.++||++++. +....+|++.|...++..++.+++.+++|+++.... ..+.+
T Consensus 132 ~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~---l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 207 (1140)
T PRK06814 132 ILPDHLNKDELLGANALVEAGTFIAILLGTIIGGL---ATISGNFVILVALLMGIAVLGWLASLFIPKTGNAAP-DLKID 207 (1140)
T ss_pred hhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHH---HHhccccHHHHHHHHHHHHHHHHHHhhCCCCCCCCC-CCeec
Confidence 99999999999999999999999999999999544 445678999996665666655555666776542100 00000
Q ss_pred HHHHHHHHHhCCCCchHHHHHHHHHHhhhhhcccchHHhhcccCchhHHHHHHHHHHhhcchhHHHHHhHHHHHHH-cCC
Q 012002 187 EGKAVLRKIRGTDKIEPEFLELVEASRIAKEVKHPFRNLLKRRNRPQLVIAVALQIFQQCTGINAIMFYAPVLFKT-LGF 265 (473)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~ 265 (473)
. .. .++....++.+.+++. ++...+..+........+..+.|.++++ +|.
T Consensus 208 ~---------------~~----------~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~ 258 (1140)
T PRK06814 208 R---------------NI----------IRSTITLLKYAKADKR----IWLAILGISWFWLVGAVVLSQLPLLAKETLGG 258 (1140)
T ss_pred c---------------ch----------HHHHHHHHHHHhcCch----HHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCC
Confidence 0 00 0001123444555554 4444444444444455666788888765 899
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHhHHhHHHHHHHHHHHHHHhhhhccCCcc--------cchhhHHH
Q 012002 266 GGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKDHSED--------LHTGFAVL 337 (473)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~ 337 (473)
++...+.+.+..+++.+++.++.+++.++..+++.+..+.++.+++.+.+.+... ....... ......+.
T Consensus 259 ~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 336 (1140)
T PRK06814 259 DENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASS--SVPAEPAQLKSILVFLSKRHGWR 336 (1140)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhccc--ccccccccccchhhhhcccccHH
Confidence 9999999999999999999999999999887777666555554444433332100 0000000 00011222
Q ss_pred HHHHHHHHHHhhhccccccccccccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 012002 338 VVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCH 398 (473)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (473)
..+..++++.+. ....+...+++.+..|++.+|+++|+.++...++..+++.+.+.+.+.
T Consensus 337 ~~~~~~~~g~~~-~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~~ 396 (1140)
T PRK06814 337 ILIDLFGLAAAG-GLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQAL 396 (1140)
T ss_pred HHHHHHHHHHHH-HHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 222222333222 222334567778999999999999999999999999999999888753
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.2e-26 Score=215.74 Aligned_cols=347 Identities=14% Similarity=0.063 Sum_probs=224.2
Q ss_pred CCCCcccCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHH---Hh-----hhHHHHHHHHH
Q 012002 20 DDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNV---AA-----QNLAMLIVGRI 91 (473)
Q Consensus 20 ~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~l~~i~~~~~~---~~-----~~~~~l~~~r~ 91 (473)
.+.+++|++..+.|++.+.+.+++.+++++.|+++||+|||+.++.+....+++..... +. ..+..+++.|+
T Consensus 28 ~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (396)
T TIGR00882 28 WLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVLFAPFFIYVFGPLLQSNILVGAIVGGL 107 (396)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 34567899999999999999999999999999999999999999887776655443321 11 22344567789
Q ss_pred HHhhhhhhhhhhhhHHHhhcCCCCCchhhHHHHHHHHHHHHHHHHHHhhhccccCCccchHHHHHhhhHHHHHHHHHhhc
Q 012002 92 LLGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVGSLL 171 (473)
Q Consensus 92 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~ 171 (473)
+.|++.+...+....+..|.. +++++.++......++|.+++|.+++... + .+||.+|++.+++.++..++.+.
T Consensus 108 ~~g~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~g~~~g~~~~g~l~---~-~~~~~~f~~~~~~~~~~~~~~~~ 181 (396)
T TIGR00882 108 YLGFVFSAGAGAIEAYIEKVS--RNSNFEYGKARMFGCVGWALCASIAGILF---S-IDPQIVFWLGSGFALILMLLLMF 181 (396)
T ss_pred HHHHHhccchhhHHHHHHHhh--hhcccccchhhhhcccHHHHHHHHHhhhh---c-cCchHHHHHHHHHHHHHHHHHHH
Confidence 999998888888888877753 33456677788888899999999854432 2 58999999998888777665544
Q ss_pred -ccCChhhHHhhCChHHHHHHHHHHhCCCCchHHHHHHHHHHhhhhhcccchHHhhcccCchhHHHHHHHHHHhhcchhH
Q 012002 172 -VTDTPNSLIERGRFEEGKAVLRKIRGTDKIEPEFLELVEASRIAKEVKHPFRNLLKRRNRPQLVIAVALQIFQQCTGIN 250 (473)
Q Consensus 172 -~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (473)
.+|+|+.. +.+++ .+ .++++++.++..+++|++. ++...+..+.....+.
T Consensus 182 ~~~~~~~~~----~~~~~-------~~--------------~~~~~~~~~~~~~~l~~~~----~~~~~l~~~~~~~~~~ 232 (396)
T TIGR00882 182 AKPKAPSSA----TVANA-------LG--------------ANASAFSLKLALELFRQRK----FWMFVLYVVGVACVYD 232 (396)
T ss_pred hCCCCchhh----hhhcc-------cc--------------cccCCCCHHHHHHHHcCCc----HHHHHHHHHHHHHHHH
Confidence 34433110 00000 00 0000111223556666665 3333333333333334
Q ss_pred HHHHhHHHHHHHc----CCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHhHHhHHHHHHHHHHHHHHhhhhccC
Q 012002 251 AIMFYAPVLFKTL----GFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKDH 326 (473)
Q Consensus 251 ~~~~~~~~~~~~~----g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (473)
....+.+.++++. +.+....+...+...+...++.+..+++.||+++|+.+.++..+.++...+....
T Consensus 233 ~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~-------- 304 (396)
T TIGR00882 233 VFDQQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFA-------- 304 (396)
T ss_pred HHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhc--------
Confidence 4444556665542 4445566777888888889999999999999999999888777666655443321
Q ss_pred CcccchhhHHHHHHHHHHHHHhhhccccccccccccccccccchhhhHHH-HHHHHHHHHHHHHHHHHHHhhhhhhhHHH
Q 012002 327 SEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSV-TVCVNLLFTFVIAQAFLSMLCHFKFGIFL 405 (473)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (473)
+ +.+.......+....... .......+..+..|++.++++.+. .+....+|+.+++.+.|.+.|..|+...+
T Consensus 305 ----~--~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G~~~~f 377 (396)
T TIGR00882 305 ----T--TALEVVILKMLHAFEVPF-LLVGCFKYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIGFQGAY 377 (396)
T ss_pred ----C--ChHHHHHHHHHHHHHHHH-HHHHHHHHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhcccHHHH
Confidence 1 112222222222222111 111223345666788888877766 56788999999999999999988876666
Q ss_pred HHHHHHHHHHH
Q 012002 406 FFSGWVLIMSC 416 (473)
Q Consensus 406 ~~~~~~~~~~~ 416 (473)
.+.++..++..
T Consensus 378 ~~~~~~~~i~~ 388 (396)
T TIGR00882 378 LVLGCIVLLFT 388 (396)
T ss_pred HHHHHHHHHHH
Confidence 65555444433
|
|
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.2e-27 Score=230.47 Aligned_cols=293 Identities=14% Similarity=0.115 Sum_probs=214.8
Q ss_pred hhhhccccCCCCCcccCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhh---------
Q 012002 11 VVYRRTQQGDDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVAAQ--------- 81 (473)
Q Consensus 11 ~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~l~~i~~~~~~~~~--------- 81 (473)
..+.+...+.++++++++..+.|++.+.+.+++.++.++.|+++||+|||+++.++.++++++++++++.+
T Consensus 49 ~g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~ 128 (633)
T TIGR00805 49 NGLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYS 128 (633)
T ss_pred HHHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhChHHhcCCcccc
Confidence 45666778899999999999999999999999999999999999999999999999999999999998763
Q ss_pred ------------------------------------------hHHHHHHHHHHHhhhhhhhhhhhhHHHhhcCCCCCchh
Q 012002 82 ------------------------------------------NLAMLIVGRILLGCGVGFANQAVPLFLSEIAPTRIRGG 119 (473)
Q Consensus 82 ------------------------------------------~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~ 119 (473)
.+..++++|+++|+|.+..++...+++.|++|+++|++
T Consensus 129 ~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~ 208 (633)
T TIGR00805 129 TTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPL 208 (633)
T ss_pred ccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHH
Confidence 24567889999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhccccCCc------------------c-chHHHHHhhhHHHHHHHHHhhcccCChhhHH
Q 012002 120 LNILFQLNVTIGILFANLVNYGTSHIKSQ------------------W-GWRISLGLAGIPAALLTVGSLLVTDTPNSLI 180 (473)
Q Consensus 120 ~~~~~~~~~~lG~~~~~~~~~~~~~~~~~------------------~-~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~ 180 (473)
++++++.+..+|.++|++++......... . +||..|++.+++.++..+.++++|++.+...
T Consensus 209 ~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~l~~~p~~lp~~~ 288 (633)
T TIGR00805 209 YIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTSIPFFFFPKALPKEG 288 (633)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhCccccCCcc
Confidence 99999999999999999997654432110 1 3888899988888877766666665432110
Q ss_pred hhCChHHHHHHHHHHhCCCCchHHHHHHHHHHhhhhhcccchHHhhcccCchhHHHHHHHHHHhhcchhHHHHHhHHHHH
Q 012002 181 ERGRFEEGKAVLRKIRGTDKIEPEFLELVEASRIAKEVKHPFRNLLKRRNRPQLVIAVALQIFQQCTGINAIMFYAPVLF 260 (473)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (473)
.+.+.++.++ ........+. .. +.....++....++.+++++. ++...+..++....++.+..|.|.++
T Consensus 289 ~~~~~~~~~~---~~~~~~~~~~-~~---~~~~~~~~~~~~~~~Ll~n~~----f~~~~l~~~~~~~~~~~~~~~lP~yl 357 (633)
T TIGR00805 289 KRVNVDVHET---EKLEKSEDKS-RK---KNSDITKDFPKIIKRLLCNPI----YMLVILAQVIDSLAFNGYITFLPKYL 357 (633)
T ss_pred cccchhhhhh---hccccccccc-ch---hhhhhHHHHHHHHHHHHcCcH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000000000 0000000000 00 000001111234556666665 66677777777778888999999988
Q ss_pred HH-cCCCCcchHHHHHHHHH-HHHHHHHHHHHHHhhcCc--chhHhHHhHHHHHHHHH
Q 012002 261 KT-LGFGGSASLYSTVITGA-VNVLSTLVSIYSVDKVGR--RMLLLEAGIQMFLSQTV 314 (473)
Q Consensus 261 ~~-~g~~~~~~~~~~~~~~~-~~~~~~~~~g~l~d~~~~--~~~~~~~~~~~~~~~~~ 314 (473)
++ +|+++.+++.+.....+ +.+++.+++|+++||+++ |+.+..+.+...++.+.
T Consensus 358 ~~~~g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~~~~~~~~~~~~~~~~~~~~~~ 415 (633)
T TIGR00805 358 ENQYGISSAEANFLIGVVNLPAAGLGYLIGGFIMKKFKLNVKKAAYFAICLSTLSYLL 415 (633)
T ss_pred HHHcCCcHHHHHHHhhhhhhhHHHHHHhhhhheeeeecccHHHHHHHHHHHHHHHHHH
Confidence 75 99999999988887766 568999999999999984 45666555555555433
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.7e-27 Score=202.65 Aligned_cols=348 Identities=13% Similarity=0.040 Sum_probs=221.2
Q ss_pred CCCCcccCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhh
Q 012002 20 DDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVAAQNLAMLIVGRILLGCGVGF 99 (473)
Q Consensus 20 ~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~l~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~ 99 (473)
.+.++.+.+..-.|.+.|.|.+.+.+.++.+|.++||+|||+++++|++..++..++.+++.|+..+.++|++.|+..|
T Consensus 58 a~~~~~~~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~F~afv~aR~l~Gi~kg- 136 (451)
T KOG2615|consen 58 AIGEPDGASVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRNFAAFVLARFLGGIFKG- 136 (451)
T ss_pred hhCCcccccchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccC-
Confidence 3444444567788999999999999999999999999999999999999999999999999999777777999999988
Q ss_pred hhhhhhHHHhhcCCCCCchhhHHHHHHHHHHHHHHHHHHhhhccccCCccc---hHHHHHhhhHHHHH-HHHHhhcccCC
Q 012002 100 ANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTSHIKSQWG---WRISLGLAGIPAAL-LTVGSLLVTDT 175 (473)
Q Consensus 100 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~---wr~~f~~~~~~~~~-~~~~~~~~~e~ 175 (473)
...+..++++|.+++|+|+++++..+..+++|.++||.+|+++..+.+..| .-.+-++..+.+.. .....+++||+
T Consensus 137 nl~v~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g~~p~alP~~~v~i~a~~~v~~~~~~lpET 216 (451)
T KOG2615|consen 137 NLSVIRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSSISGSYPFALPCLLVFILAAGDVTFFPWFLPET 216 (451)
T ss_pred chHHHHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHhhHhhhccCchHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 778899999999999999999999999999999999999777666221222 11212222222222 23335678887
Q ss_pred hhhHHhhCChHHHHHHHHHHhCCCCchHHHHHHHHHHhhhhhcccchHHhhcccCchh---HHHHHHHHHHhhcchhHHH
Q 012002 176 PNSLIERGRFEEGKAVLRKIRGTDKIEPEFLELVEASRIAKEVKHPFRNLLKRRNRPQ---LVIAVALQIFQQCTGINAI 252 (473)
Q Consensus 176 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 252 (473)
-+ .+++.++.....+... +.. +..+.........+|++.... ..-.+.+..+.+...+...
T Consensus 217 L~---~rk~~~~~~~~~~~~~----------~~~---~~~~~~~~~~v~~lrn~p~~~~i~~~~i~~l~~~ly~~l~s~~ 280 (451)
T KOG2615|consen 217 LP---LRKRNDEHSTLQEAAD----------DRL---ALLKFARIFKVAALRNPPLLDFISVLRIFGLHYFLYLELFSGL 280 (451)
T ss_pred cc---chhhcccccchhhhhh----------hhh---hhcchhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHH
Confidence 32 2222211111100000 000 000000011111223222221 1222334444444445555
Q ss_pred HHhHHHHH-HHcCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcC--cchhHhHHhHHHHHHHHHHHHHHhhhhccCCcc
Q 012002 253 MFYAPVLF-KTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVG--RRMLLLEAGIQMFLSQTVIAIILGIKVKDHSED 329 (473)
Q Consensus 253 ~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (473)
.++.+.+. +.+|+++.+.|.+.+..++.+.+.+....+..+|.+ -+-.+......+.-..+.+..
T Consensus 281 ~~t~~~l~~~rfg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP~~llls~------------ 348 (451)
T KOG2615|consen 281 ENTVLFLTHGRFGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIVPAFLLLSL------------ 348 (451)
T ss_pred HhhHHHhhcCccCCChhhheeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHhc------------
Confidence 55555554 449999999999999998888888877777777765 233333222222222111111
Q ss_pred cchhhHHHHHHHHHHHHHhhhccccccccccccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 012002 330 LHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHF 399 (473)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (473)
......+.....+..... ....+....+.....|+++||+..|+....+.++-+++|.+.|.+....
T Consensus 349 --~~~~~~l~~~s~l~sf~~-A~~vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~~Ws 415 (451)
T KOG2615|consen 349 --ARTPVVLYLGSTLKSFST-ASVVTCLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVIFSWS 415 (451)
T ss_pred --cccchhhhHHHHHHHHHH-HHhhHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhheeEEEe
Confidence 111122222222222222 2222344556678889999999999999999999999999998776543
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.9e-26 Score=216.31 Aligned_cols=347 Identities=16% Similarity=0.129 Sum_probs=246.6
Q ss_pred cCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHh-----hhHHHHHHHHHHHhhhhhhh
Q 012002 26 KYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVAA-----QNLAMLIVGRILLGCGVGFA 100 (473)
Q Consensus 26 ~~s~~~~~~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~l~~i~~~~~~~~-----~~~~~l~~~r~l~G~~~~~~ 100 (473)
.-|+..++++..+..+...+.++++|.++||++|||+++.+.++.++..+..++. .+.|.+++.-++.|++.+..
T Consensus 41 t~S~~~valv~~a~~LP~~Llsl~aG~laDr~drrrili~~~~~~~~~~~~L~~l~~~~~~~~~~Ll~~~fl~g~~~a~~ 120 (524)
T PF05977_consen 41 TGSPLMVALVQAASTLPILLLSLFAGALADRFDRRRILILSQLLRALVALLLAVLAFFGLLSPWLLLILTFLLGIGSAFF 120 (524)
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHH
Confidence 4478889999999999999999999999999999999999998877665555443 47889999999999999999
Q ss_pred hhhhhHHHhhcCCCCCchhhHHHHHHHHHHHHHHHHHHhhhccccCCccchHHHHHhhhHHHHHHHHHhhcccCChhhHH
Q 012002 101 NQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVGSLLVTDTPNSLI 180 (473)
Q Consensus 101 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~ 180 (473)
.|+..+++.|..|+++...++++.+...++..++||.+++. +...+|-.+.|.+.++..++..+....+++.++
T Consensus 121 ~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~---Lva~~G~~~~f~inalsfl~~i~~l~~~~~~~~--- 194 (524)
T PF05977_consen 121 NPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGI---LVAFFGAAAAFLINALSFLISILALLRWKPPPP--- 194 (524)
T ss_pred HHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHcccccc---
Confidence 99999999999999999999999999999999999999554 333456778888887766655444433332210
Q ss_pred hhCChHHHHHHHHHHhCCCCchHHHHHHHHHHhhhhhcccchHHhhcccCchhHHHHHHHHHHhhcchhHHHHHhHHHHH
Q 012002 181 ERGRFEEGKAVLRKIRGTDKIEPEFLELVEASRIAKEVKHPFRNLLKRRNRPQLVIAVALQIFQQCTGINAIMFYAPVLF 260 (473)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (473)
.++..+| +..++.+..++-+.+++..+..+ +..+........+...+|.+.
T Consensus 195 ~~~~~~e-------------------------~~~~~l~~G~ryv~~~~~l~~~l----~~~~~~~l~~~a~~aLlPl~a 245 (524)
T PF05977_consen 195 PSSLPRE-------------------------RFFSALREGLRYVRSSPPLRSVL----LRSFLFNLFASAVWALLPLFA 245 (524)
T ss_pred ccccchh-------------------------hhhhhHHHHHHHHhcchHHHHHH----HHHHHHHHhhhHHHHhhhHHH
Confidence 0000000 00011112223233333322222 222222222334445678777
Q ss_pred HH-cCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHhHHhHHHHHHHHHHHHHHhhhhccCCcccchhhHHHHH
Q 012002 261 KT-LGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKDHSEDLHTGFAVLVV 339 (473)
Q Consensus 261 ~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (473)
++ +|.++...|++.+..+++.++|.++.+++.+|+++++.+..+.+..+++.+.+++.. +.+...
T Consensus 246 ~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~~--------------~~~~~~ 311 (524)
T PF05977_consen 246 RDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALSP--------------SFWLAL 311 (524)
T ss_pred HHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcch--------------HHHHHH
Confidence 55 899999999999999999999999999999999998888877777776666555431 223333
Q ss_pred HHHHHHHHhhhccccccccccccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHH
Q 012002 340 IMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHFKFGIFLFFSGWVLIMSCFVF 419 (473)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (473)
...++.+.+.. .......+..++..|++.||+++++.++....+..++..+.|.+.+..+....+..++++.+++.++.
T Consensus 312 ~~l~l~G~~~~-~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~~~ 390 (524)
T PF05977_consen 312 IALFLAGAAWI-IANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSALIA 390 (524)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHH
Confidence 33333333322 22234456678889999999999999999999999999999999999887766666666555555544
Q ss_pred hhc
Q 012002 420 FLL 422 (473)
Q Consensus 420 ~~~ 422 (473)
...
T Consensus 391 ~~~ 393 (524)
T PF05977_consen 391 LRF 393 (524)
T ss_pred HHh
Confidence 433
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=99.95 E-value=1e-24 Score=207.11 Aligned_cols=368 Identities=16% Similarity=0.142 Sum_probs=229.1
Q ss_pred HhHhhhhccccCCCCCcccCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 012002 8 FFPVVYRRTQQGDDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVAAQNLAMLI 87 (473)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~l~~i~~~~~~~~~~~~~l~ 87 (473)
|+.-.......+.+..|+|- .....|+.+...++..++.++.|+++|.+|||.+++.+.++..+|+++++.++|...++
T Consensus 57 ~~~~~~~a~~l~~I~~diG~-~~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA~~~~~~i 135 (599)
T PF06609_consen 57 YFVLVLPASILPYINADIGG-SDNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATAQNMNTFI 135 (599)
T ss_pred HHHHhccHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcCCcHHHHH
Confidence 33444444445667777774 57788999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhhhhhhhhHHHhhcCCCCCchhhHHHHHHHHHHHHHHHHHHhhhccccCCccchHHHHHhhhHHHHHHHH
Q 012002 88 VGRILLGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTV 167 (473)
Q Consensus 88 ~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~ 167 (473)
.+..+.|+|.|... .....++|..|.|.|....++...........++.+ ...+..+.+|||.|++.++...+.++
T Consensus 136 ag~~l~GvgaG~~~-~~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~i---a~~~~~~~~WRw~~~~~~i~~~i~~v 211 (599)
T PF06609_consen 136 AGMVLYGVGAGVQE-LAALAISELVPNKWRGLGLAIASIPFIITTWISPLI---AQLFAAHSGWRWIFYIFIIWSGIALV 211 (599)
T ss_pred HHHHHHHHhhHHHH-HHHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHH---HHHhccCCCcchHHHHHHHHHHHHHH
Confidence 99999999987665 456668999999999887777766555555566666 33334456899999999888777665
Q ss_pred HhhcccCChhhHHhhCCh---HHHHHHHHHH------------------hCCCCchHHHHHHH-------------HHHh
Q 012002 168 GSLLVTDTPNSLIERGRF---EEGKAVLRKI------------------RGTDKIEPEFLELV-------------EASR 213 (473)
Q Consensus 168 ~~~~~~e~p~~~~~~~~~---~~~~~~~~~~------------------~~~~~~~~~~~~~~-------------~~~~ 213 (473)
+.+++..+|++...+++. .+..+.++.+ .+....+....+.. ---+
T Consensus 212 l~~~fY~PP~~~~~~~~~~s~~~~l~~lD~IG~~L~~~Gl~LfLlgl~wgG~~~~~W~Sa~VIa~lviG~~~Lv~F~~wE 291 (599)
T PF06609_consen 212 LIFFFYFPPPRAQLHGRKLSKREQLKELDWIGIFLFIAGLALFLLGLSWGGYPYYPWKSAHVIAPLVIGFVLLVAFVVWE 291 (599)
T ss_pred HHHHHhCCCchhhhccccCcHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccchhhHHHHHHHHHHHHHhh
Confidence 533322223222222211 1212222211 11111111100000 0001
Q ss_pred hhhhcccc--hHHhhcccCchhHHHHHHHHHHhhcchhHHHHHhHHHHHH-HcCCCCc---chHHHHHHHHHHHHHHHHH
Q 012002 214 IAKEVKHP--FRNLLKRRNRPQLVIAVALQIFQQCTGINAIMFYAPVLFK-TLGFGGS---ASLYSTVITGAVNVLSTLV 287 (473)
Q Consensus 214 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~---~~~~~~~~~~~~~~~~~~~ 287 (473)
.....+++ -.+++|++ |.+...++..+.....++....+.|.... .++-++. ..++.....+++..++.++
T Consensus 292 ~~~~~~~Pl~P~~Lf~~~---r~~~~~lvi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~~~~~~s~~~~fg~~~g~~i 368 (599)
T PF06609_consen 292 WFGAPKDPLFPHRLFKDR---RGFAALLVISFISGMNFFSVNILWPQQVVNVFGSDPISITEIGWISSPVGFGSCAGAVI 368 (599)
T ss_pred hhccCCCCcCCHHHhccc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccceeehhhhhHHHHHHHHHHH
Confidence 11111122 23455543 22444445555555556666666665544 4655543 5677888888999999999
Q ss_pred HHHHHhhcCcchhHh-HHhHHHHHHHHHHHHHHhhhhccCCcccchhhHHHHHHHHHHHHHhhhcccccccccccccccc
Q 012002 288 SIYSVDKVGRRMLLL-EAGIQMFLSQTVIAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFP 366 (473)
Q Consensus 288 ~g~l~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 366 (473)
.+.+..+++|-|... ++...+.+++.++...- . ++....+.+..+..+..+. .. ......++-..|
T Consensus 369 ~g~l~~~ir~~Kw~li~~~~~~ta~~Gama~~~------~----~n~~~~i~~~~l~g~giG~--~~-~~~~~~~ql~~p 435 (599)
T PF06609_consen 369 LGLLFSKIRHIKWQLIFGSVLMTAFCGAMAAVR------P----DNKNAAIAFLVLAGFGIGG--IL-VPAIVIAQLIVP 435 (599)
T ss_pred HHHHHHHccchhHHHHHHHHHHHHHHHHHHHcc------C----CCcchHHHHHHHHHHhHHH--HH-HHHHHeeEeeeC
Confidence 999999888766554 44444443333332221 0 1112222222222221111 11 122344455679
Q ss_pred ccchhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 012002 367 LETRSAGQSVTVCVNLLFTFVIAQAFLSML 396 (473)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (473)
++.-+++.|+..++..+|+.++..++..+.
T Consensus 436 ~~~ig~a~gL~~s~R~~GGsIg~aIy~~I~ 465 (599)
T PF06609_consen 436 DEDIGTATGLTGSIRSIGGSIGYAIYNAIF 465 (599)
T ss_pred chHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 999999999999999999999988886554
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.3e-25 Score=189.39 Aligned_cols=334 Identities=15% Similarity=0.117 Sum_probs=257.1
Q ss_pred ccccCCCCCcccCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHh
Q 012002 15 RTQQGDDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVAAQNLAMLIVGRILLG 94 (473)
Q Consensus 15 ~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~l~~i~~~~~~~~~~~~~l~~~r~l~G 94 (473)
.+..+++++|+|+|.+..|++.++..+...+.+++..+++.|+|.++.+..++++.+++.++-... +.+.++.+-.+.|
T Consensus 32 gPLL~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G~~iR~~~-~~~~L~~gt~l~G 110 (395)
T COG2807 32 GPLLDEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAGILIRSLG-GLPLLFLGTLLAG 110 (395)
T ss_pred hhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHH
Confidence 345578899999999999999999999999999999999999999999999999999999998887 7888899999999
Q ss_pred hhhhhhhhhhhHHHhhcCCCCCchhhHHHHHHHHHHHHHHHHHHhhhccccCCcc-chHHHHHhhhHHHHHHHHHhhccc
Q 012002 95 CGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTSHIKSQW-GWRISLGLAGIPAALLTVGSLLVT 173 (473)
Q Consensus 95 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~-~wr~~f~~~~~~~~~~~~~~~~~~ 173 (473)
.|.+...+..+.++-+.||+ +-+..++++.+..++|..+++.+ ...+.++. +||....+-+.++++.++.++.-.
T Consensus 111 ~gIav~nVLLPslIK~~Fpk-~~~~mtglYs~sl~~~aaLaa~l---avpla~~~~gW~~aL~~WAl~allAl~~WlPq~ 186 (395)
T COG2807 111 AGIAVINVLLPSLIKRDFPK-RVGLMTGLYSTSLGAGAALAAAL---AVPLAQHSGGWRGALGFWALLALLALLIWLPQA 186 (395)
T ss_pred hhHHHHHHhhhHHHHhhccc-chhhHHhHHHHHHHHHHHHHhhh---hhHHHHhhccHHHHHHHHHHHHHHHHHHHhhhc
Confidence 99999999999999999975 47999999999999999999988 44444444 799999999999988887765321
Q ss_pred CChhhHHhhCChHHHHHHHHHHhCCCCchHHHHHHHHHHhhhhhcccchHHhhcccCchhHHHHHHHHHHhhcchhHHHH
Q 012002 174 DTPNSLIERGRFEEGKAVLRKIRGTDKIEPEFLELVEASRIAKEVKHPFRNLLKRRNRPQLVIAVALQIFQQCTGINAIM 253 (473)
Q Consensus 174 e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (473)
.|.. ....+.+..+...++|++. .|...+.+..+...++...
T Consensus 187 --~r~~--------------------------------~~~~~~~~~~~~~vw~~~~----aW~vtLfmGlqS~~~Y~~~ 228 (395)
T COG2807 187 --LREQ--------------------------------AASIATKLVSVRKVWRSPL----AWQVTLFMGLQSLLYYIVI 228 (395)
T ss_pred --cccc--------------------------------ccccccccccccccccCch----hHHHHHHHHhhHHHHHHHH
Confidence 1100 0001112233445677776 6777777788888899999
Q ss_pred HhHHHHHHHcCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcC-cchhHhHHhHHHHHHHHHHHHHHhhhhccCCcccch
Q 012002 254 FYAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVG-RRMLLLEAGIQMFLSQTVIAIILGIKVKDHSEDLHT 332 (473)
Q Consensus 254 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (473)
.|+|.++.+.|+|+.++|.+.+...+..++..+....+.+|.. +|+........+.++.+.+.+. +.
T Consensus 229 ~WLP~ili~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~~~~------------P~ 296 (395)
T COG2807 229 GWLPAILIDRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLVGLLLA------------PG 296 (395)
T ss_pred HHHHHHHHHcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHh------------hh
Confidence 9999999999999999999999999999999999999999765 4555555555556666555543 33
Q ss_pred hhHHHHHHHHHHHHHhhhccccccccccccccc-cccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhh-hHHHHH
Q 012002 333 GFAVLVVIMICTFISAFAWSWGPLGWLIPSETF-PLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHFKF-GIFLFF 407 (473)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 407 (473)
...++..+.+. ....+..|+..+.+.... .++..+.-.|+.+.++++-...+|.++|.+.|..+. ...+..
T Consensus 297 ~~~~lw~~llG----~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~gsw~~~~~~ 369 (395)
T COG2807 297 QLPILWALLLG----LGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDATGSWSAPLVL 369 (395)
T ss_pred hHHHHHHHHHh----CccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcCChHHHHHH
Confidence 33333321111 111122233333333333 446678889999999999999999999999998864 333333
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.7e-25 Score=210.52 Aligned_cols=383 Identities=11% Similarity=0.054 Sum_probs=237.7
Q ss_pred ccCCCchhHHHHHHHHHHHHHHHHHHHHhhhh-hhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhhhh
Q 012002 25 CKYDNQGLQLFTSSLYLAGLTATFFASYTTRR-LGRRLTMLIAGIFFIAGVAFNVAAQNLAMLIVGRILLGCGVGFANQA 103 (473)
Q Consensus 25 ~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~Dr-~Grr~~l~~~~~l~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~ 103 (473)
+|++..+.+++.+.+.+++.++++++|+++|| +|||+++.++.++.+++.++.+++++++.++++|++.|+|.|...+.
T Consensus 43 lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~ 122 (475)
T TIGR00924 43 LGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLAMSIYPDLIFYGLGTIAVGSGLFKAN 122 (475)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHhccccccCC
Confidence 89999999999999999999999999999999 89999999999999999999999999999999999999999999999
Q ss_pred hhHHHhhcCCCCC---chhhHHHHHHHHHHHHHHHHHHhhhccccCCccchHHHHHhhhHHHHHHHHHhhccc----CCh
Q 012002 104 VPLFLSEIAPTRI---RGGLNILFQLNVTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVGSLLVT----DTP 176 (473)
Q Consensus 104 ~~~~i~~~~~~~~---r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~----e~p 176 (473)
..++++|++|+++ |++++++++.+.++|.++||.+ .+.+.++.|||+.|++.++..++..+.+++.+ +.|
T Consensus 123 ~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l---~g~l~~~~g~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~ 199 (475)
T TIGR00924 123 PSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLL---AGVIAENYGYHVGFNLAAVGMVIGLLTFFAGRHMLRDIG 199 (475)
T ss_pred HHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHH---HHHHHHhcChHHHHHHHHHHHHHHHHHHHHcccccccCC
Confidence 9999999998764 8889999999999999999999 55555667999999998765554444333322 222
Q ss_pred hhHHhhCChHHHHHHHHH--------------HhCCCCchHHHHHH-------HHHHhhhhhcccchHHhhcccCchhHH
Q 012002 177 NSLIERGRFEEGKAVLRK--------------IRGTDKIEPEFLEL-------VEASRIAKEVKHPFRNLLKRRNRPQLV 235 (473)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (473)
+.. .+.+.++.+...+. ....+......... ........++ ...+.-|.+ . ..+
T Consensus 200 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~-~~~ 274 (475)
T TIGR00924 200 SVP-DPLSGQGKTYGKLLLALLAALALVFFCAWLMHHVVIANILLMTVTLAVIIFFFRLAFKP--RLDAVARNK-M-YAY 274 (475)
T ss_pred CCC-CCcchhhhhhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhc--cCCHHHHhH-H-HHH
Confidence 100 00000110000000 00000000000000 0000000000 000111111 1 113
Q ss_pred HHHHHHHHhhcchhHHHHHhHHHHHHH-cCCCC----cchHHHHHHHHHHHHHHHHHHHHHHhhcCc-----chhH--hH
Q 012002 236 IAVALQIFQQCTGINAIMFYAPVLFKT-LGFGG----SASLYSTVITGAVNVLSTLVSIYSVDKVGR-----RMLL--LE 303 (473)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~----~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~-----~~~~--~~ 303 (473)
+.+.+........+.......+.+.++ .+.+. ...+.+.+++.+..++..++..++..|++| +... .+
T Consensus 275 l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~~ 354 (475)
T TIGR00924 275 IVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEMLGMSVPVIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFTL 354 (475)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccceEECHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHH
Confidence 333444444444555555555555443 33322 126677888888888877765554444443 2333 55
Q ss_pred HhHHHHHHHHHHHHHHhhhhccCCcccchhhHHHHHHHHHHHHHhhhccccccccccccccccccchhhhHHHHHHHHHH
Q 012002 304 AGIQMFLSQTVIAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLL 383 (473)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 383 (473)
+.++.+++.....+.... .+ . ........++...++.........|....+..+..|++.||+.+|+......+
T Consensus 355 G~~l~~~~~~~~~~~~~~--~~-~---~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~ 428 (475)
T TIGR00924 355 GMLFCGASFLTFAASIWF--AD-A---GGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQAM 428 (475)
T ss_pred HHHHHHHHHHHHHHHHhh--cC-C---CCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 666666666555543211 00 0 11122223333444444555556677788889999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhhhHHHHHHHH-HHHHHHHHHhh
Q 012002 384 FTFVIAQAFLSMLCHFKFGIFLFFSGW-VLIMSCFVFFL 421 (473)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 421 (473)
|..+++.+.....+..++...+...++ +.+.+++..+.
T Consensus 429 g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (475)
T TIGR00924 429 GSLLGGYLATFGAVPQGVTGVFGKIGLVTLLVGVVMALM 467 (475)
T ss_pred HHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHH
Confidence 999998888877666554444433333 33334334333
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=9.3e-25 Score=208.97 Aligned_cols=383 Identities=13% Similarity=0.082 Sum_probs=242.1
Q ss_pred cccCCCCCcccCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHh------hhHHHHHHH
Q 012002 16 TQQGDDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVAA------QNLAMLIVG 89 (473)
Q Consensus 16 ~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~l~~i~~~~~~~~------~~~~~l~~~ 89 (473)
.+.+++++++|+|..+++++.++. ..+..+++++|++.||+|||+++.++.+++++++++++++ ++++.+.+.
T Consensus 48 v~s~~L~~~lgls~~~l~~i~svg-~~~g~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i~~s~~~l~l~ 126 (591)
T PTZ00207 48 LISGAMQARYNLTQRDLSTITTVG-IAVGYFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVIEGSVVRLSVY 126 (591)
T ss_pred HHHHHHHHHhCcCHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccccCcHHHHHHH
Confidence 445678899999999999999874 4556788899999999999999999999999999999998 689999999
Q ss_pred HHHHhhhhhhhhhhhhHHHhhcCCCCCchhhHHHHHHHHHHHHHHHHHH-hhhccccCCccchHHHHHhhhHHHHHHHHH
Q 012002 90 RILLGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLV-NYGTSHIKSQWGWRISLGLAGIPAALLTVG 168 (473)
Q Consensus 90 r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~-~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~ 168 (473)
|++.|+|.+...+.....+.+|+| ++||++.++...+.++|.++.+.+ ..+. . .+|+..|++.+++.++..++
T Consensus 127 r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~---~--~~~~~~fl~l~vl~~vv~ll 200 (591)
T PTZ00207 127 NGLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFF---S--DNTSAYFFFLMSFALVVGIL 200 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHH---H--HhHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999997 679999999999999999864444 2222 1 36888888888888776665
Q ss_pred h-hcc--cCChhhHHhhCChHHHHHHHHHHhCCC----------------------------------------------
Q 012002 169 S-LLV--TDTPNSLIERGRFEEGKAVLRKIRGTD---------------------------------------------- 199 (473)
Q Consensus 169 ~-~~~--~e~p~~~~~~~~~~~~~~~~~~~~~~~---------------------------------------------- 199 (473)
. .++ |++|++..++++.+++++..++.++..
T Consensus 201 ~~~~vr~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~q~~p~~~f~~~~~i~~~l~~yl~~~~~~~~~~~~~~~~~~~~~ 280 (591)
T PTZ00207 201 AIVFMRLPPFHLTGYQEKHLDEEEKAQRLMRKGVYLKQKAPMWRFVYGFVILIILIVFLPLQGALVAYLKLGSNFKVGFA 280 (591)
T ss_pred HHhheeCCcchhhcccccCCCHHHHHHHhhhhhhhhhcCCCceehhhHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 3 334 344444333332223222211110000
Q ss_pred ------------------------Cc---hHHHHHH-H--H---HHhh-------h---hhcccchHHhhcccCchhHHH
Q 012002 200 ------------------------KI---EPEFLEL-V--E---ASRI-------A---KEVKHPFRNLLKRRNRPQLVI 236 (473)
Q Consensus 200 ------------------------~~---~~~~~~~-~--~---~~~~-------~---~~~~~~~~~~~~~~~~~~~~~ 236 (473)
.. +.+..+. + . +.+. + .+...++.+.+++.. +|
T Consensus 281 ~v~~~lll~~p~l~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~t~~q~l~~~d----~W 356 (591)
T PTZ00207 281 VTVIVLTVIFPFMAFPLTTFDGKRPHDDSDGKAKEHVEAGEEVSAAEDKVVETDVDYIAPQFQETFIEGLKTAR----LW 356 (591)
T ss_pred HHHHHHHHHHHHHhhhHHHhccCCcCCCccccccccccccccccccccccccccccCCCCCCcchHHHHHhchh----HH
Confidence 00 0000000 0 0 0000 0 000113333333444 88
Q ss_pred HHHHHHHhhcchhHHHHHhHHHHHHHc-CCCCcc--hHHHHHHHHHHHHHHHHHHHHHHhhcCcch----h-----HhHH
Q 012002 237 AVALQIFQQCTGINAIMFYAPVLFKTL-GFGGSA--SLYSTVITGAVNVLSTLVSIYSVDKVGRRM----L-----LLEA 304 (473)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~--~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~----~-----~~~~ 304 (473)
+++..++|.......+...+.++.+.+ |.+.++ ...+.++.++++.+|++..|.++....+|+ . +.+.
T Consensus 357 ll~~~~~cg~g~gl~~~~N~~qI~~sl~g~~~~~~~~~~~vsL~si~~~~GRl~~g~~~~~~~~~~~~~r~prt~~l~~~ 436 (591)
T PTZ00207 357 CLLWSIFCCVGAHFVIIFNARFIYTALAGEAPDDALNTLLTVLNGVGSAVGRLCMSYFEIWSQKRRAEDRVPITIALFIP 436 (591)
T ss_pred HHHHHHHHhhCchheeeecHHHHHHHhcCCCCCccceeeehhhhhHHHHhhHHHHHHHHHHHHhhccccccchhHHHHHH
Confidence 888888888888888888888998887 773333 333778899999999999999883332222 1 1111
Q ss_pred hHHHHHHHHHHHHHHhhhhccCCcccchhhHHHHHHHHHHHHHhhhccccccccccccccccccchhhhHHHHHHHHHHH
Q 012002 305 GIQMFLSQTVIAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLF 384 (473)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 384 (473)
.+ +.++.++++... +.. .+.+...+.+.+++.. .++....++|+|. ++-|+-+-+.....-+|
T Consensus 437 ~~-~~~~~lll~~~~-----------p~~---~L~~~~~lvg~~~G~~-~~~~~~i~selFg-k~~g~~yN~~~~a~pig 499 (591)
T PTZ00207 437 SV-CIITMLTLFLTL-----------PKA---ALPLPYFIAAFANGFM-AATIALVTRTIFA-KDPAKHYNFCFLGSVLS 499 (591)
T ss_pred HH-HHHHHHHHHHHC-----------Ccc---HhHHHHHHHHHHhhHh-HHHHHHHHHHHhc-cchHHHhhHHhHHHHHH
Confidence 11 223333332221 211 1122222222222222 2355677799999 77788777777777777
Q ss_pred HHHH-HHHHHHHhhhhh-------------h-hHHHHHHHHHHHHHHHHHhhccCCC
Q 012002 385 TFVI-AQAFLSMLCHFK-------------F-GIFLFFSGWVLIMSCFVFFLLPETK 426 (473)
Q Consensus 385 ~~~~-~~~~~~~~~~~~-------------~-~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (473)
+.+. ..++|.++|.-. + ..+++.++++.+..+....+..+++
T Consensus 500 s~~~n~~l~G~~Yd~ea~k~~~~~C~G~~C~~~~~~v~~~~~~~g~~~s~~l~~R~r 556 (591)
T PTZ00207 500 AIFLNRLLYGEWYTQQADKLGQDVCTERVCVVMPLAFLLGLSFLAFITSTYVHLQYR 556 (591)
T ss_pred HHHHHHHHHHHHHHHHHhhCCCCeeCCceeeHhHHHHHHHHHHHHHHHHhheeeehH
Confidence 7666 567777776532 2 2445555555555554444444444
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=5e-25 Score=211.31 Aligned_cols=360 Identities=10% Similarity=0.017 Sum_probs=219.8
Q ss_pred CCCcccCCCchhHHHHHHHHHHHHHHHHHHHHhhhh-hhhHHHHHHHHHHHHHHHHHHHHhhhHHH-HHHHHHHHhhhhh
Q 012002 21 DSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRR-LGRRLTMLIAGIFFIAGVAFNVAAQNLAM-LIVGRILLGCGVG 98 (473)
Q Consensus 21 ~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~Dr-~Grr~~l~~~~~l~~i~~~~~~~~~~~~~-l~~~r~l~G~~~~ 98 (473)
+.+++|++.++.+++.+.+.....+..+++|+++|| +||||+++++.+++++++++++++.+... ++++|+++|+|.|
T Consensus 41 l~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~~~~~~~ll~~~~~l~~ig~g 120 (489)
T PRK10207 41 FVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGMSLLKPDLIFIALGTIAVGNG 120 (489)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHhccc
Confidence 455789999999999999999999999999999999 99999999999999999999999877554 4579999999999
Q ss_pred hhhhhhhHHHhhcCCCC--CchhhHHHHHHHHHHHHHHHHHHhhhccccCCccchHHHHHhhhHHHHHHHHHhhcccCCh
Q 012002 99 FANQAVPLFLSEIAPTR--IRGGLNILFQLNVTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVGSLLVTDTP 176 (473)
Q Consensus 99 ~~~~~~~~~i~~~~~~~--~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p 176 (473)
...+...+++.|++|++ +|++++++++.+.++|.++||.+ .+.+.++.|||+.|++.++..++..+.+.+.++..
T Consensus 121 ~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l---~g~l~~~~gw~~~F~i~~i~~~~~~~~~~~~~~~~ 197 (489)
T PRK10207 121 LFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSL---APVIADKFGYSVTYNLCGAGLIIALLVYFACRGMV 197 (489)
T ss_pred cccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHH---HHHHHHhhChHHHHHHHHHHHHHHHHHHHHcchhh
Confidence 99999999999999877 45789999999999999999999 55556678999999996553333333333333211
Q ss_pred hhHH--hhCChHHHHHHH-------------HHHhCCCCchHHHHHHHH-------HHhhhhhcccchHHhhcccCchhH
Q 012002 177 NSLI--ERGRFEEGKAVL-------------RKIRGTDKIEPEFLELVE-------ASRIAKEVKHPFRNLLKRRNRPQL 234 (473)
Q Consensus 177 ~~~~--~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~ 234 (473)
+... .+++..+..... ........ ......... -..++.+ . .+.+|++...
T Consensus 198 ~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~f~~~~~~--~--~~~~r~r~~~-- 270 (489)
T PRK10207 198 KDIGSEPDHKPMSFSKLLLVLLGSVVMIFVCAWLMHNVE-VANLVLIVLSIVVTIIFFREAFK--L--DKTGRNKMFV-- 270 (489)
T ss_pred cccCCCCCccchhhhhHHHHHHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHHHHHHhc--C--CHHHHHHHHH--
Confidence 1000 000001100000 00000000 000000000 0000000 0 1233322211
Q ss_pred HHHHHHHHHhhcchhHHHHHhHHHHHHH-cCCCC----cchHHHHHHHHHHHHHHHHHHHHHHhhcCcchh-------Hh
Q 012002 235 VIAVALQIFQQCTGINAIMFYAPVLFKT-LGFGG----SASLYSTVITGAVNVLSTLVSIYSVDKVGRRML-------LL 302 (473)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~----~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~-------~~ 302 (473)
....++........+....+..+.+.++ .+.+. .....+...+.+..++..++.+++.||+++|+. +.
T Consensus 271 ~~~l~~~~~~f~~~~~q~~~~l~l~~~~~~~~~~~G~~i~~~~~~~~n~~~iii~~pl~~~l~~rl~~r~~~~~~~~k~~ 350 (489)
T PRK10207 271 AFVLMLEAVVFYILYAQMPTSLNFFAINNVHHEILGFSINPVSFQALNPFWVVVASPILAGIYTHLGSKGKDLSMPMKFT 350 (489)
T ss_pred HHHHHHHHHHHHHHHHHcccHHHHHHHHhccccccceEECHHHHHhHhHHHHHHHHHHHHHHHHHHhhCCCCCCcHHHHH
Confidence 1111111222333334444455555542 22211 123345555667777788888999999998873 66
Q ss_pred HHhHHHHHHHHHHHHHHhhhhccCCcccchhhHHHHHHHHHHHHHhhhccccccccccccccccccchhhhHHHHHHHHH
Q 012002 303 EAGIQMFLSQTVIAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNL 382 (473)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 382 (473)
++.++.+++.+.+........ ..+ ...+.++. +...++.+.......+....++.+..|++.++.++|+.+....
T Consensus 351 ~G~~l~~~~~~~~~~~~~~~~-~~~---~~~s~~~~-i~~~~l~g~Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~~l~~~ 425 (489)
T PRK10207 351 LGMFLCSLGFLTAAAAGMWFA-DAQ---GLTSPWFI-VLVYLFQSLGELFISALGLAMIAALVPQHLMGFILGMWFLTQA 425 (489)
T ss_pred HHHHHHHHHHHHHHHHHHhhc-CCC---CccCHHHH-HHHHHHHHHHHHHHhHHHHHHHHHhChHHHHHHHHHHHHHHHH
Confidence 666666666544332111111 000 11122222 2333333344444455666777788999999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 012002 383 LFTFVIAQAFLSM 395 (473)
Q Consensus 383 ~~~~~~~~~~~~~ 395 (473)
+|+.++..+....
T Consensus 426 ig~~lg~~l~~~~ 438 (489)
T PRK10207 426 AAFLLGGYVATFT 438 (489)
T ss_pred HHHHHHHHHHHHh
Confidence 9999988777544
|
|
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.5e-24 Score=199.99 Aligned_cols=353 Identities=9% Similarity=-0.085 Sum_probs=224.8
Q ss_pred ccCCCCCcccCCCchhHHH--HHHHHHHHHHHHHHH-HHhhhhhhhHHHHHHHHHHH-HHHHHHHH---Hhhh-HHHHHH
Q 012002 17 QQGDDSNYCKYDNQGLQLF--TSSLYLAGLTATFFA-SYTTRRLGRRLTMLIAGIFF-IAGVAFNV---AAQN-LAMLIV 88 (473)
Q Consensus 17 ~~~~~~~~~~~s~~~~~~~--~s~~~~~~~~~~~~~-g~l~Dr~Grr~~l~~~~~l~-~i~~~~~~---~~~~-~~~l~~ 88 (473)
..|..-++.|.|.+++|++ .+...+...+.+++. ++..||+||||..++.+.+. ++.....+ ...+ ..+++.
T Consensus 23 ~lp~~l~~~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (390)
T TIGR02718 23 ALPTLLREDGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVLPMQCLVSACLASLALVGPDVAGAGWAVG 102 (390)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHHHHHHHHHHHHHHHHcCCcchhhHHHHHH
Confidence 3344445669999999997 467788888888888 44799999998875555332 22222222 1222 334455
Q ss_pred HHHHHhhhhhhhhhhhhHHHhhcCCCCCchhhHHHHHHHHHHHHHHHHHHhhhccccCCccchHHHHHhhhHHHHHHHHH
Q 012002 89 GRILLGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVG 168 (473)
Q Consensus 89 ~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~ 168 (473)
.-++.++..+...+...++..|..++++++...+....+..+|.++++.. ...+.++.|||..|++.++..++..+.
T Consensus 103 ~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~---~~~l~~~~gw~~~f~~~a~l~~~~~~~ 179 (390)
T TIGR02718 103 LLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAG---TLVLFGKFGQRPAFLLVACVPLASLVC 179 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHhCHHHHHHHHHHHHHHHHHH
Confidence 56666777788888888888999988888888888988889999999977 445556689999999999888776666
Q ss_pred hhcccCChhhHHhhCChHHHHHHHHHHhCCCCchHHHHHHHHHHhhhhhcccchHHhhcccCchhHHHHHHHHHHhhcch
Q 012002 169 SLLVTDTPNSLIERGRFEEGKAVLRKIRGTDKIEPEFLELVEASRIAKEVKHPFRNLLKRRNRPQLVIAVALQIFQQCTG 248 (473)
Q Consensus 169 ~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (473)
.++++|+++. +++. + ++...+.++.+|++.. +......++....
T Consensus 180 ~~~~~~~~~~---~~~~-~----------------------------~~~~~~~~~~l~~~~~----~~~~~~~~l~~~~ 223 (390)
T TIGR02718 180 VLWLKDRAVA---SPEA-P----------------------------LARRASLFRFFRRPLA----WSLLALALLSAMT 223 (390)
T ss_pred HHHcCCCCcC---cccc-c----------------------------hhhHHHHHHHHcCcCH----HHHHHHHHHHHHH
Confidence 5555443210 0000 0 0001234566666653 3233333333344
Q ss_pred hHHHHHhHHHHHHHcCCCCcchHHHHHHHHH-HHHHHHHHHHHHHhhcCcchhHhHHhHHHHHHHHHHHHHHhhhhccCC
Q 012002 249 INAIMFYAPVLFKTLGFGGSASLYSTVITGA-VNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKDHS 327 (473)
Q Consensus 249 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (473)
......+.+.++++.|+++.+.+......++ ..+++.++.|++.||+++|+.+..+.....+.......... . .
T Consensus 224 ~~~~~~~~~~~l~~~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~-~-~--- 298 (390)
T TIGR02718 224 AVSGFGLSKLYLVDAGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAA-F-W--- 298 (390)
T ss_pred HHHHHHHhhHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH-c-c---
Confidence 4555556777777889999999998877764 66777899999999999999888766554333222221110 0 0
Q ss_pred cccchhhHHHHHHHHHHHHHhhhccccccccccccccccc-cchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHH
Q 012002 328 EDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPL-ETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHFKFGIFLF 406 (473)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (473)
.............+.....+... +.......+..++ +.+++.+++.+....++..++|.+.|.+.+..++...+.
T Consensus 299 ---~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~ 374 (390)
T TIGR02718 299 ---LAPGIAVAWSCSAFGSLITGITS-VAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDRFGYAGGFL 374 (390)
T ss_pred ---cCCcHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHH
Confidence 00011111111111111111111 2223333355554 889999999999999999999999999999888866666
Q ss_pred HHHHHHHHHHH
Q 012002 407 FSGWVLIMSCF 417 (473)
Q Consensus 407 ~~~~~~~~~~~ 417 (473)
.++++.+.+.+
T Consensus 375 ~~~~~~l~a~~ 385 (390)
T TIGR02718 375 SGTVLAVLAIL 385 (390)
T ss_pred HHHHHHHHHHH
Confidence 66555555443
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.5e-22 Score=183.38 Aligned_cols=332 Identities=15% Similarity=0.063 Sum_probs=231.9
Q ss_pred cccCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhh-hHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhhh
Q 012002 24 YCKYDNQGLQLFTSSLYLAGLTATFFASYTTRRLG-RRLTMLIAGIFFIAGVAFNVAAQNLAMLIVGRILLGCGVGFANQ 102 (473)
Q Consensus 24 ~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~Dr~G-rr~~l~~~~~l~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~ 102 (473)
+.|+|..|+|.+.+...+...++++++|.++||.+ +|+++.+..++.++..+.....++++.+++.-++..+...+..|
T Consensus 31 ~~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~~~~~f~~~~~~~~l~~~~~~p~~p 110 (400)
T PF03825_consen 31 SRGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLLAFSSSFWWLFVIMLLFSFFFSPTMP 110 (400)
T ss_pred hCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHccHHH
Confidence 34899999999999999999999999999999986 57888888888888777778889999999888888988888899
Q ss_pred hhhHHHhhcCCCCCchhhHHHHHHHHHHHHHHHHHH-hhhccccCCccchHHHHHhhhHHHHHHHHHhhcccCChhhHHh
Q 012002 103 AVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLV-NYGTSHIKSQWGWRISLGLAGIPAALLTVGSLLVTDTPNSLIE 181 (473)
Q Consensus 103 ~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~-~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~ 181 (473)
...++..+... ++++-.+-.....++|.+++... +.......+..+....+++.+...++.....+.+|+.|+..
T Consensus 111 l~dsi~~~~~~--~~~~~YG~iRlwGSiGf~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ll~~~~l~lp~~~~~~-- 186 (400)
T PF03825_consen 111 LSDSIALSYLG--DRGKDYGRIRLWGSIGFIVAALAFGGLLGGYLGISGTSLIFYIAAILSLLLAGFALFLPKTPPKR-- 186 (400)
T ss_pred HHHHHHHHHcc--cccCCCCcchhhhhHHHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHHHHHHHhCCCCcccc--
Confidence 99998888875 34455566666667777666443 11111111212233456666666655555556678766110
Q ss_pred hCChHHHHHHHHHHhCCCCchHHHHHHHHHHhhhhhcccchHHhhcccCchhHHHHHHHHHHhhcchhHHHHHhHHHHHH
Q 012002 182 RGRFEEGKAVLRKIRGTDKIEPEFLELVEASRIAKEVKHPFRNLLKRRNRPQLVIAVALQIFQQCTGINAIMFYAPVLFK 261 (473)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (473)
+.++ +.++....+..+++|+++ ++.+.+..+........+..+.+.+++
T Consensus 187 --~~~~-------------------------~~~~~~~~~~~~llk~~~----~~~Fll~~~l~~~~~~~~~~f~~~yl~ 235 (400)
T PF03825_consen 187 --SAKE-------------------------SVKKLLGLDALKLLKNPR----FLVFLLAAFLIGISHAAYYTFFSIYLQ 235 (400)
T ss_pred --ccCC-------------------------CcccccchHHHHHhcCcc----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000 000111123345777776 555555556666667778888888899
Q ss_pred HcC-CCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHhHHhHHHHHHHHHHHHHHhhhhccCCcccchhhHHHHHH
Q 012002 262 TLG-FGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKDHSEDLHTGFAVLVVI 340 (473)
Q Consensus 262 ~~g-~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (473)
+.| .+....+...++..+..++.-...+++..|+|.|+++.++.+..++=..+...... +....+....
T Consensus 236 ~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~~----------~~~~~~~~~~ 305 (400)
T PF03825_consen 236 ELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFSD----------PWPFIVALQL 305 (400)
T ss_pred HcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcC----------CcHHHHHHHH
Confidence 877 77778888888888999999999999999999999999998888888777766410 1111111111
Q ss_pred H-HHHHHHhhhccccccccccccccccccchhhhHHHHHHH-HHHHHHHHHHHHHHHhhhhhh
Q 012002 341 M-ICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCV-NLLFTFVIAQAFLSMLCHFKF 401 (473)
Q Consensus 341 ~-~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 401 (473)
. ....+..+.... .....++.+..|++.|+++.++.+.. ..+|..++..+.|++.|+.+.
T Consensus 306 l~q~lhG~tf~~~~-~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~ 367 (400)
T PF03825_consen 306 LGQLLHGLTFGLFH-AASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGA 367 (400)
T ss_pred HHHhhhhHHHHHHH-HHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcc
Confidence 1 112222222222 23456778999999999999998886 468999999999999998763
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.6e-22 Score=194.97 Aligned_cols=334 Identities=14% Similarity=0.046 Sum_probs=210.9
Q ss_pred CcccCCCchhHHHHHHHHHHHHHHHHHHHHhhh----hhhh-HHHHHHHHHHHHHHHHHHHHhh------hHHHHHHHHH
Q 012002 23 NYCKYDNQGLQLFTSSLYLAGLTATFFASYTTR----RLGR-RLTMLIAGIFFIAGVAFNVAAQ------NLAMLIVGRI 91 (473)
Q Consensus 23 ~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~D----r~Gr-r~~l~~~~~l~~i~~~~~~~~~------~~~~l~~~r~ 91 (473)
+.+|++...+|.+..+..+.-++..|+.|.++| |+|| |+.++.+....+++.+++...+ .+..+++..+
T Consensus 35 ~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~llf~~p~~~~~~~~~~~~~~~~ 114 (473)
T PRK10429 35 DVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFLLFSAHLFEGTAQYVFVCVTYI 114 (473)
T ss_pred HhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHHHHHcCCCCCccHHHHHHHHHHH
Confidence 355899999999999999999999999999999 6698 6677778888888766664433 2345666677
Q ss_pred HHhhhhhhhhhhhhHHHhhcC-CCCCchhhHHHHHHHHHHHHHHHHHHhhh-c---cccCCccchHHHHHhhhHHHHHHH
Q 012002 92 LLGCGVGFANQAVPLFLSEIA-PTRIRGGLNILFQLNVTIGILFANLVNYG-T---SHIKSQWGWRISLGLAGIPAALLT 166 (473)
Q Consensus 92 l~G~~~~~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~lG~~~~~~~~~~-~---~~~~~~~~wr~~f~~~~~~~~~~~ 166 (473)
+.+++.....+.-.++..|.. +++||.+..++...+.++|..+.+.+... . +...+..+|+....+.+++.++..
T Consensus 115 l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~g~~~~~~i~~~~~~~~~ 194 (473)
T PRK10429 115 LWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPFVNYVGGGDRGFGFQMFTLVLIAFFIVST 194 (473)
T ss_pred HHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHH
Confidence 788888888889999999998 58889999998777777775555444221 1 111223468888877777766655
Q ss_pred HHh-hcccCChhhHHhhCChHHHHHHHHHHhCCCCchHHHHHHHHHHhhhhhcccchHH----hhcccCchhHHHHHHHH
Q 012002 167 VGS-LLVTDTPNSLIERGRFEEGKAVLRKIRGTDKIEPEFLELVEASRIAKEVKHPFRN----LLKRRNRPQLVIAVALQ 241 (473)
Q Consensus 167 ~~~-~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 241 (473)
+.. +..+|.++....+ .+++++.++++ +++++. ++..+..
T Consensus 195 ~~~~~~~~e~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~n~~----~~~ll~~ 239 (473)
T PRK10429 195 IITLRNVHEVYSSDNQV-------------------------------SAEGSHLTLKDIVALIYKNDQ----LSCLLGM 239 (473)
T ss_pred HHHHcCceecCCccccc-------------------------------cccccCCCHHHHHHHHhcCHH----HHHHHHH
Confidence 543 3466643100000 00001122333 334433 3333343
Q ss_pred HHhhcchhHHHHHhHHHHHHHcCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHhHHhHHHHHHHHHHHHHHhh
Q 012002 242 IFQQCTGINAIMFYAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGI 321 (473)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (473)
.++..........+.+++.+....+....+.+.....++.+++.++.+++.||+|+|+.+..+..+..++.+........
T Consensus 240 ~~~~~~~~~~~~~~~~y~~~y~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~ 319 (473)
T PRK10429 240 ALAYNIASNIINGFAIYYFTYVIGDADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLA 319 (473)
T ss_pred HHHHHHHHHHHhhheeeEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 44434444445555555555433344555666666678889999999999999999999887776555444443321100
Q ss_pred hhccCCcccchhhHHHHHHHHHHHHHhhhcccccccccccccccc-------ccchhhhHHHHHHHHHHHHHHHHHHHHH
Q 012002 322 KVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFP-------LETRSAGQSVTVCVNLLFTFVIAQAFLS 394 (473)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (473)
.....+..++...+...+.. ...+..+++.+|..+ .+..|...|.......++..+++.+.|.
T Consensus 320 ---------~~~~~~~~~i~~~l~g~~~~-~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~ 389 (473)
T PRK10429 320 ---------APHNALLIVIAGILLNIGTA-LFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGV 389 (473)
T ss_pred ---------CchhHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11112222222222222222 222345666777754 3345668899999999999999999999
Q ss_pred Hhhhhhh
Q 012002 395 MLCHFKF 401 (473)
Q Consensus 395 ~~~~~~~ 401 (473)
+.+..|+
T Consensus 390 ~l~~~Gy 396 (473)
T PRK10429 390 VLGLIGY 396 (473)
T ss_pred HHHHcCC
Confidence 8875543
|
|
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.9e-21 Score=181.47 Aligned_cols=383 Identities=12% Similarity=0.079 Sum_probs=245.7
Q ss_pred CCcccCCCchhHHHHHHHHHHHHHHHHHHHHhhh----hhhhHHHHHHH-HHHHHHHHHHHHHhhhHH------------
Q 012002 22 SNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTR----RLGRRLTMLIA-GIFFIAGVAFNVAAQNLA------------ 84 (473)
Q Consensus 22 ~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~D----r~Grr~~l~~~-~~l~~i~~~~~~~~~~~~------------ 84 (473)
-+++|++..+.+++..+..+...+.+++.|+++| |+||||.++++ .....++.++.+++++++
T Consensus 31 l~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~~~~~~~~~~~~~~~~~ 110 (477)
T TIGR01301 31 VQELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFAADIGHLFGDNLDKKTK 110 (477)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhCchhhhhccccccccch
Confidence 3457999999999999999999999999999999 59999988774 666667777777776653
Q ss_pred -----HHHHHHHHHhhhhhhhhhhhhHHHhhcCCCCCc--hhhHHHHHHHHHHHHHHHHHHhhhcc------ccCC----
Q 012002 85 -----MLIVGRILLGCGVGFANQAVPLFLSEIAPTRIR--GGLNILFQLNVTIGILFANLVNYGTS------HIKS---- 147 (473)
Q Consensus 85 -----~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r--~~~~~~~~~~~~lG~~~~~~~~~~~~------~~~~---- 147 (473)
.++++-.+..++.....+...++++|.+|+++| +.+.++.+...++|.++|+.+++... ....
T Consensus 111 ~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~ 190 (477)
T TIGR01301 111 PRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACG 190 (477)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccccccccc
Confidence 223333444558888888999999999998865 57999999999999999999876431 1100
Q ss_pred --ccchHHHHHhhhHHHHHHHHH-hhcccCChhhHHhhCChHHHHHHHHHHhCCCCchHHHHHHHHHHhhhhhcccchHH
Q 012002 148 --QWGWRISLGLAGIPAALLTVG-SLLVTDTPNSLIERGRFEEGKAVLRKIRGTDKIEPEFLELVEASRIAKEVKHPFRN 224 (473)
Q Consensus 148 --~~~wr~~f~~~~~~~~~~~~~-~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (473)
-.+.|..|++.++..++..++ .+..+|.|... .++.+++ ..+ +.++.+....+++
T Consensus 191 ~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~-~~~~~~~------~~~---------------~~~~~~~~~~~~~ 248 (477)
T TIGR01301 191 VSCANLKSCFLIDIILLAILTYIALSAVKENPLIG-SDDFINS------EAA---------------PPSKHGEEAFFGE 248 (477)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHeeeeeccCCCc-cccchhh------hcc---------------cccccchhhhHHH
Confidence 025789999988877776666 45688866311 0000000 000 0000011123445
Q ss_pred hhcc-cCchhHHHHHHHHHHhhcchhHHHHHhHHHHHHH--cCCCCcc----------hHHHHHHHHHHHHHHHHHHHHH
Q 012002 225 LLKR-RNRPQLVIAVALQIFQQCTGINAIMFYAPVLFKT--LGFGGSA----------SLYSTVITGAVNVLSTLVSIYS 291 (473)
Q Consensus 225 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~~~~----------~~~~~~~~~~~~~~~~~~~g~l 291 (473)
+++. +..++.++..++..++.+.+.+.+..|.+.+..+ ++-++.+ ..+....+++...+.+++..++
T Consensus 249 i~~~~~~mP~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~i~s~~l~~l 328 (477)
T TIGR01301 249 LFGAFKYLPRPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLGITSIGMEKL 328 (477)
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5542 3345567777888888888888888888777643 4433211 1233445566666777788899
Q ss_pred HhhcCc-chhHhHHhHHHHHHHHHHHHHHhhhhcc-C----Cccc-chhh-HHHHHHHHHHHHHhhhccccccccccccc
Q 012002 292 VDKVGR-RMLLLEAGIQMFLSQTVIAIILGIKVKD-H----SEDL-HTGF-AVLVVIMICTFISAFAWSWGPLGWLIPSE 363 (473)
Q Consensus 292 ~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~----~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (473)
.+|+|+ |+...++.++.++++....+........ . .... +... .+..+..+...+... .....++++++++
T Consensus 329 ~~~~g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~-A~~~siPfal~s~ 407 (477)
T TIGR01301 329 CRGWGAGKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFAILGIPL-AITYSIPFALASI 407 (477)
T ss_pred HHHhccchhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHHHhhHHH-HHHHHHhHHHHHH
Confidence 999985 6666777777777776666543211000 0 0000 0001 133333333333333 3334577888889
Q ss_pred cccc--cchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhh--hhHHHHHHHHHH-HHHHHHHhhccCCCC
Q 012002 364 TFPL--ETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHFK--FGIFLFFSGWVL-IMSCFVFFLLPETKN 427 (473)
Q Consensus 364 ~~p~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 427 (473)
..|+ +..|..+|+.|.+..+...+.....|.+.+..+ ....+.++++.. +.++...+.+|+++.
T Consensus 408 ~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~~~~~~~~~~ 476 (477)
T TIGR01301 408 RSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLALILLPRPRV 476 (477)
T ss_pred HccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 8885 455999999999999999999888887655544 234444555544 445556666776553
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.8e-22 Score=192.68 Aligned_cols=359 Identities=11% Similarity=0.050 Sum_probs=210.6
Q ss_pred CCCCcccCCCchhHHHHHHHHHHHHHHHHHHHHhhhh-hhhHHHHHHHHHHHHHHHHHHHHhh-hHHHHHHHHHHHhhhh
Q 012002 20 DDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRR-LGRRLTMLIAGIFFIAGVAFNVAAQ-NLAMLIVGRILLGCGV 97 (473)
Q Consensus 20 ~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~Dr-~Grr~~l~~~~~l~~i~~~~~~~~~-~~~~l~~~r~l~G~~~ 97 (473)
.+.+++|++.++.+++.+.+........+++|+++|| +|||++++++.++.+++.+++++++ +.+.+.++|+++|++.
T Consensus 47 yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~~~~~~~l~~~~~l~gig~ 126 (500)
T PRK09584 47 YLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWSGHDAGIVYMGMATIAVGN 126 (500)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhh
Confidence 3456789999999999988887767777899999999 5999999999999999999999874 5667778899999999
Q ss_pred hhhhhhhhHHHhhcCCCCC--chhhHHHHHHHHHHHHHHHHHHhhhccccCCccchHHHHHhhhHHHHHHHHHhh----c
Q 012002 98 GFANQAVPLFLSEIAPTRI--RGGLNILFQLNVTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVGSL----L 171 (473)
Q Consensus 98 ~~~~~~~~~~i~~~~~~~~--r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~----~ 171 (473)
|...+...+++.|++|+++ |..++++++.+.++|..++|.+ .+.+.+++|||+.|++.++..++..+.+. .
T Consensus 127 g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i---~g~l~~~~g~~~~F~i~~i~~~i~~i~~~~~~~~ 203 (500)
T PRK09584 127 GLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLA---TPWLAAKYGWSVAFALSVVGMLITVVNFAFCQRW 203 (500)
T ss_pred hcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHH---HHHHHHhhCHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 9999999999999998654 4567889999999999999999 55555678999999998765444433222 2
Q ss_pred ccCChhhHHhhCChHHHHHHH-----------HHHhCCCCchHHHHHHHHHHhhhhhcccchHHh--hcccCchhHHHHH
Q 012002 172 VTDTPNSLIERGRFEEGKAVL-----------RKIRGTDKIEPEFLELVEASRIAKEVKHPFRNL--LKRRNRPQLVIAV 238 (473)
Q Consensus 172 ~~e~p~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 238 (473)
++|.++.. .+++.+...... ....-.+. + ........... .......++. .+...+++.+..
T Consensus 204 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~- 278 (500)
T PRK09584 204 VKQYGSKP-DFEPINYRKLLLTIVGVVALIAIATWLLHNQ-E-IARMALGVVAL-GIVVIFGKEAFAMKGAARRKMIVA- 278 (500)
T ss_pred hccCCCCC-CccccchhhHHHHHHHHHHHHHHHHHHHhcc-h-HHHHHHHHHHH-HHHHHHHHHHhhcCHHHHHHHHHH-
Confidence 33321100 000011100000 00000000 0 00000000000 0000000000 000111221221
Q ss_pred HHHHHhhcchhHHHHHhHHHHHHH---cCCCC------cchHHHHHHHHHHHHHHHHHHHHHHhh----cCcchhHhHHh
Q 012002 239 ALQIFQQCTGINAIMFYAPVLFKT---LGFGG------SASLYSTVITGAVNVLSTLVSIYSVDK----VGRRMLLLEAG 305 (473)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~---~g~~~------~~~~~~~~~~~~~~~~~~~~~g~l~d~----~~~~~~~~~~~ 305 (473)
+... .....++......+..+.. ...+. ...+.+.+...+..++..++..++-+| .+..+.+.++.
T Consensus 279 ~~~~-~~~i~f~~~~~q~~~~l~~~~~~~~~~~~~g~~i~~~~~~s~n~i~iil~~p~~~~~~~~l~~r~~~~~~~~~G~ 357 (500)
T PRK09584 279 FILM-LEAIIFFVLYSQMPTSLNFFAIRNVEHSILGIAVEPEQYQALNPFWIMIGSPILAAIYNKMGDRLPMPHKFAIGM 357 (500)
T ss_pred HHHH-HHHHHHHHHHHHhccHHHHHHHHhccccccceEECHHHHHHHhHHHHHHHHHHHHHHHHHhCcCCCcHHHHHHHH
Confidence 1111 2222233333344433221 11111 225566667776666666666444444 44456677777
Q ss_pred HHHHHHHHHHHHHHhhhhccCCcccchhhHHHHHHHHHHHHHhhhccccccccccccccccccchhhhHHHHHHHHHHHH
Q 012002 306 IQMFLSQTVIAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFT 385 (473)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 385 (473)
++.+++...+........ .+ ...+.+ ..+...++.+.......|....++.+..|++.||+.+|+......++.
T Consensus 358 ~l~~l~f~~l~~~~~~~~---~~--~~vs~~-~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~ 431 (500)
T PRK09584 358 VLCSGAFLVLPLGAKFAN---DA--GIVSVN-WLIASYGLQSIGELMISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAA 431 (500)
T ss_pred HHHHHHHHHHHHHHHhcC---CC--CccCHH-HHHHHHHHHHHHHHHHhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHH
Confidence 777777776655432100 00 111122 333344444455555567777888899999999999998887777777
Q ss_pred HHHHHHHH
Q 012002 386 FVIAQAFL 393 (473)
Q Consensus 386 ~~~~~~~~ 393 (473)
.++..+..
T Consensus 432 ~~~g~~~~ 439 (500)
T PRK09584 432 LIAGYVAN 439 (500)
T ss_pred HHHHHHHH
Confidence 77766664
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.1e-21 Score=186.19 Aligned_cols=331 Identities=12% Similarity=0.032 Sum_probs=208.4
Q ss_pred CCcccCCCchhHHHHHHHHHHHHHHHHHHHHhhhh----hhh-HHHHHHHHHHHHHHHHHHHHhhh------HHHHHHHH
Q 012002 22 SNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRR----LGR-RLTMLIAGIFFIAGVAFNVAAQN------LAMLIVGR 90 (473)
Q Consensus 22 ~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~Dr----~Gr-r~~l~~~~~l~~i~~~~~~~~~~------~~~l~~~r 90 (473)
.+++|++..++|.+.++..+..++..|+.|.++|| +|| |+.++.+.+..+++.++....++ ++.+++..
T Consensus 37 t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~~~~~~~~~~~~ 116 (444)
T PRK09669 37 TDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGATGKIIYACVTY 116 (444)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHH
Confidence 44679999999999999999999999999999998 777 46666787887777766555543 45666677
Q ss_pred HHHhhhhhhhhhhhhHHHhhcC-CCCCchhhHHHHHHHHHHHHHHHHHHhhh-cccc---CCccchHHHHHhhhHHHHHH
Q 012002 91 ILLGCGVGFANQAVPLFLSEIA-PTRIRGGLNILFQLNVTIGILFANLVNYG-TSHI---KSQWGWRISLGLAGIPAALL 165 (473)
Q Consensus 91 ~l~G~~~~~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~lG~~~~~~~~~~-~~~~---~~~~~wr~~f~~~~~~~~~~ 165 (473)
++.+.+.......-.++.+|+. +++||.+..++...+..+|..+++.+... ...+ ....+|+..+.+.++++++.
T Consensus 117 ~l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~ii~~v~ 196 (444)
T PRK09669 117 ILLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMGLLGVVL 196 (444)
T ss_pred HHHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHH
Confidence 7777777777778889999998 55789988888888888887777654321 1122 12468999998888877766
Q ss_pred HHHhh-cccCChhhHHhhCChHHHHHHHHHHhCCCCchHHHHHHHHHHhhhhhcccchHHhhcccCchhHHHHHHHHHHh
Q 012002 166 TVGSL-LVTDTPNSLIERGRFEEGKAVLRKIRGTDKIEPEFLELVEASRIAKEVKHPFRNLLKRRNRPQLVIAVALQIFQ 244 (473)
Q Consensus 166 ~~~~~-~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (473)
.++.+ ..+|.++. + + +++.+..+.++.++|++..+. .+...++
T Consensus 197 ~~~~~~~~~e~~~~-----~--~-------------------------~~~~~~~~~~~~~~~n~~~~~----l~~~~~~ 240 (444)
T PRK09669 197 FFCCFFMTKERYTP-----E--V-------------------------DNSSSVWKDLKLLLGNSQWRI----MFIFNVV 240 (444)
T ss_pred HHHHhCCeEEecCC-----C--C-------------------------cCCCCHHHHHHHHhCCchHHH----HHHHHHH
Confidence 55533 34443210 0 0 000111234555666666333 2222222
Q ss_pred hcchhHHHHHhHHHHHHHcCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHhHHhHHHHHHHHHHHHHHhhhhc
Q 012002 245 QCTGINAIMFYAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVK 324 (473)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (473)
............+++.+..--++...+.......+..+++.++.+++.||+|+|+.+..+.....+....+...
T Consensus 241 ~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~------ 314 (444)
T PRK09669 241 LLTAVVTRGGATLYYVNYVLLRPDLATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFI------ 314 (444)
T ss_pred HHHHHHHHhhhhheeeeeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHh------
Confidence 22222222333333333321122333444555567778888899999999999999887765544333222221
Q ss_pred cCCcccchhhHHHHHHHHHHHHHhhhcccccccccccccccc-------ccchhhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 012002 325 DHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFP-------LETRSAGQSVTVCVNLLFTFVIAQAFLSMLC 397 (473)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (473)
+....+...+...+ .+.......+..+++.+|..+ .+..|...|..+....+|..+++.+.|.+.+
T Consensus 315 ------~~~~~~~~~~~~~i-~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~ 387 (444)
T PRK09669 315 ------PPSNVWLIFALNIL-FNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILA 387 (444)
T ss_pred ------CcchHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11122222222222 222223334566777777764 2344677888899999999999999999887
Q ss_pred hhhh
Q 012002 398 HFKF 401 (473)
Q Consensus 398 ~~~~ 401 (473)
..|+
T Consensus 388 ~~Gy 391 (444)
T PRK09669 388 WVDY 391 (444)
T ss_pred HcCC
Confidence 6654
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=99.88 E-value=7e-22 Score=189.17 Aligned_cols=388 Identities=13% Similarity=-0.022 Sum_probs=234.5
Q ss_pred hhhhccccCCCCCcccCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhh-----hHHHHHHHHHHHH-HHHHHHHHhhhHH
Q 012002 11 VVYRRTQQGDDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRRLG-----RRLTMLIAGIFFI-AGVAFNVAAQNLA 84 (473)
Q Consensus 11 ~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~Dr~G-----rr~~l~~~~~l~~-i~~~~~~~~~~~~ 84 (473)
........+.+.+++|++.++++...+...+...+-.+ +|+++||++ ||+.++++.++.+ ++....+..++..
T Consensus 42 ~l~~~~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~K~l-~g~l~D~~~i~G~rRr~~l~~~~~l~~~~~~~~l~~~~~~~ 120 (468)
T TIGR00788 42 GLMRLPLSPMLTDDLGLDGARYQRLVGLSSLGWALKPF-AGVMSDTFPLFGYTKRWYLVLSGLLGSAILYGLLPGKVSSA 120 (468)
T ss_pred HHhhhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCCCccchHHHHHHHHHHHHHHHHhcccccchH
Confidence 34445566677888999999999999999999999666 999999998 7788888877763 4433344445544
Q ss_pred HHH-HHHHHHhhhhhhhhhhhhHHHhhcCCCCCchhhHHHH---HHHHHHHHHHHHHHhhhccccCCccchHHHHHhhhH
Q 012002 85 MLI-VGRILLGCGVGFANQAVPLFLSEIAPTRIRGGLNILF---QLNVTIGILFANLVNYGTSHIKSQWGWRISLGLAGI 160 (473)
Q Consensus 85 ~l~-~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~---~~~~~lG~~~~~~~~~~~~~~~~~~~wr~~f~~~~~ 160 (473)
... +.+++.+++.+...++.-++..|..+ +++....+.. ....++|.++++.+ .+.+.+.++||..|++.+.
T Consensus 121 ~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l---~G~l~~~~~~~~~f~~~a~ 196 (468)
T TIGR00788 121 KVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLL---GGPLLDKTLTRILFLITAA 196 (468)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHH---HHHHHHhcCcchHHHHHHH
Confidence 444 48899999999999999999999998 5554433333 33345799999888 4445556789999999888
Q ss_pred HHHHHHHHhhcccCChhhHHhhCChHHHHHHHHHHhCCCCchHHHHHHHHHHhhhhhcccchHHhhcccCchhHHHHHHH
Q 012002 161 PAALLTVGSLLVTDTPNSLIERGRFEEGKAVLRKIRGTDKIEPEFLELVEASRIAKEVKHPFRNLLKRRNRPQLVIAVAL 240 (473)
Q Consensus 161 ~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (473)
+.++..+..++++|++.....+.+.++. ... .... ....+..++........++++..++.+...++
T Consensus 197 l~ll~~~~~~~~~E~~~~~~~~~~~~~~---------~~~--~~~~--~~~~~~~~~~~~~l~~~l~~~~i~~~l~fifl 263 (468)
T TIGR00788 197 LLLLQLFVSNLSKERRAFVRPRIGTYLE---------MNM--ALLT--LGVLANVKVQILGLRGAIQLLEIAKPLIFIFL 263 (468)
T ss_pred HHHHHHHHHHhcccccccccccccccch---------hhh--hhhh--hhHHHHHHHHHHHHHHHHhcHHHHHHHHHHHH
Confidence 8877755567778853100000000000 000 0000 00000001111122223333332221111111
Q ss_pred HHHhhcchhHHHHHhHHHHHHHcCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHhHHhHHHHHHHHHHHHHHh
Q 012002 241 QIFQQCTGINAIMFYAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILG 320 (473)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (473)
.+. .... .....+. ...+..|+++...|....+.+++.+++....+++.+|++.|+.+.++.++..++.........
T Consensus 264 ~~~-~~~~-~~~~~f~-~~~~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~ 340 (468)
T TIGR00788 264 SYA-NLPG-ASGSVFC-ATTQCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVK 340 (468)
T ss_pred HHh-hcCC-CCceeEE-EEcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeee
Confidence 011 1111 1111111 112358999999999999999999999999999999999999988877777666544322110
Q ss_pred hhhccCCcccchhhHHHHHHHHHHHHHhhhccccccccccccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 012002 321 IKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHFK 400 (473)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (473)
...... .....+.......+..........+. ..++.+..|++.+|+.+++.+.+.++|..+++.+.+.+.+..|
T Consensus 341 ~~~~~~----gi~~~~~~~~~~~l~~~~~g~~~~~~-~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g 415 (468)
T TIGR00788 341 RWNLAF----GISDEVFVLGDSIIAEVLAQLKFMPF-LVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETIG 415 (468)
T ss_pred cccccc----CCCCeeeeeehhHHHHHHHHHHHccH-HHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 000000 00011122222222222333333333 5667899999999999999999999999999999998888776
Q ss_pred -----hhHHHHHHHHHH---HHHHHHHhhccC
Q 012002 401 -----FGIFLFFSGWVL---IMSCFVFFLLPE 424 (473)
Q Consensus 401 -----~~~~~~~~~~~~---~~~~~~~~~~~~ 424 (473)
+...+....++. ++.+....++|+
T Consensus 416 ~~~~~~~~~~~~i~i~~~~~l~~l~~~~llP~ 447 (468)
T TIGR00788 416 ITCDNSNNLWLLILGHSLAPLLPLPLLHLLPR 447 (468)
T ss_pred CCcccccchHHHHHHHHHHHHHHHHHHHhCCC
Confidence 444433333333 333334445665
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.7e-19 Score=168.50 Aligned_cols=364 Identities=15% Similarity=0.102 Sum_probs=242.2
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHH-HHHHHHHHHHHHHHHHh--hhHHHHHHHHHHHhhhhhhhhhhhhH
Q 012002 30 QGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTM-LIAGIFFIAGVAFNVAA--QNLAMLIVGRILLGCGVGFANQAVPL 106 (473)
Q Consensus 30 ~~~~~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l-~~~~~l~~i~~~~~~~~--~~~~~l~~~r~l~G~~~~~~~~~~~~ 106 (473)
+..++..++..+..++..|+.|.++|+-|+||.+ .+...+..+++.+..+. .+++...+.-++.-++.+.....-.+
T Consensus 70 s~~~~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~~~~~~~~~~l~iia~v~~~~~~vfyna 149 (477)
T PF11700_consen 70 SLWLYANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFVSPGQWWLALVLFIIANVGYEASNVFYNA 149 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4457888999999999999999999999877655 45555566677777664 34555555666667788888889999
Q ss_pred HHhhcCCCCCc--------------------------hhhHHHHHHHHHHHHHHHHHHhhhccccC-----CccchHHHH
Q 012002 107 FLSEIAPTRIR--------------------------GGLNILFQLNVTIGILFANLVNYGTSHIK-----SQWGWRISL 155 (473)
Q Consensus 107 ~i~~~~~~~~r--------------------------~~~~~~~~~~~~lG~~~~~~~~~~~~~~~-----~~~~wr~~f 155 (473)
++.|..+++++ ++..+.-.....+|.++.-++........ +..+-|..+
T Consensus 150 ~LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~~r~~~ 229 (477)
T PF11700_consen 150 YLPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTWAIRVAF 229 (477)
T ss_pred HhHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchhhhHHH
Confidence 99999998888 89998888888888887777644332111 124568888
Q ss_pred HhhhHHHHHHHHH-hhcccCChhhHHhhCChHHHHHHHHHHhCCCCchHHHHHHHHHHhhhhhcccchHHhhcccCchhH
Q 012002 156 GLAGIPAALLTVG-SLLVTDTPNSLIERGRFEEGKAVLRKIRGTDKIEPEFLELVEASRIAKEVKHPFRNLLKRRNRPQL 234 (473)
Q Consensus 156 ~~~~~~~~~~~~~-~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (473)
.+.++.-++..+- ++++||.|+....++...-.. ..-++-.+.++++.|.+ .
T Consensus 230 ~~~a~ww~vfsiP~~~~~~~~~~~~~~~~~~~~~~-----------------------~g~~~l~~t~k~~~~~~----~ 282 (477)
T PF11700_consen 230 LIVALWWLVFSIPLFLWLPDRPGPRPLPSGSSYLR-----------------------FGFKRLWRTFKEIRKLR----Q 282 (477)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCCCCCCCcchhHHH-----------------------HHHHHHHHHHHHHHhCh----H
Confidence 8888877666555 556787763200000000000 00011122233333322 2
Q ss_pred HHHHHHHHHhhcchhHHHHHhHHHHHH-HcCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCcc--hhHhHHhHHHHHH
Q 012002 235 VIAVALQIFQQCTGINAIMFYAPVLFK-TLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRR--MLLLEAGIQMFLS 311 (473)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~--~~~~~~~~~~~~~ 311 (473)
...+++.+++..-+...+......+.+ .+|++..+...+.....+.+++|+++.+++.||+|.| +.+........+.
T Consensus 283 ~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i 362 (477)
T PF11700_consen 283 LFLFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIII 362 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHH
Confidence 555667777777777778777777776 5999999999999999999999999999999999998 6666555444222
Q ss_pred HHHHHHHHhhhhccCCcccchhhHHHHHHHHHHHHHhhhccccccccccccccccccchhhhHHHHHHHHHHHHHHHHHH
Q 012002 312 QTVIAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQA 391 (473)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (473)
.+...+-.. .. .....+... +....+..+.+..+..+...++.+|+.|+++.+..+|++...+...+.++|.+
T Consensus 363 ~~~g~~G~~-~~---~~g~~~~~~---f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll 435 (477)
T PF11700_consen 363 PLYGLFGFW-PS---FFGLKSPWE---FWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLL 435 (477)
T ss_pred HHHHHHHhh-hc---ccCcccHHH---HHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHH
Confidence 222211000 00 000011111 22222233333444445677888999999999999999999999999999999
Q ss_pred HHHHhhhhh-hhHHHHHHHHHHHHHHHHHhhccCCCC
Q 012002 392 FLSMLCHFK-FGIFLFFSGWVLIMSCFVFFLLPETKN 427 (473)
Q Consensus 392 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (473)
+|.+.+..+ ....+....+..++++++++.++..|+
T Consensus 436 ~g~i~~~tg~~r~g~~~l~~lf~~gl~ll~~v~~~~g 472 (477)
T PF11700_consen 436 FGLITDATGSQRYGFLFLLVLFLIGLILLFFVDVEKG 472 (477)
T ss_pred HHHHHHHhCCchhHHHHHHHHHHHHHHHHhhccchhh
Confidence 999999886 445555555666666666666665443
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.87 E-value=4e-22 Score=165.86 Aligned_cols=357 Identities=14% Similarity=0.092 Sum_probs=229.4
Q ss_pred ccCCCCCcccCCCchhHHHHHHHHHHHHHHHHHHHHhhhh-hhhHHHHHHHHHHHHHHHHHHHH---hhhHHHHHHHHHH
Q 012002 17 QQGDDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRR-LGRRLTMLIAGIFFIAGVAFNVA---AQNLAMLIVGRIL 92 (473)
Q Consensus 17 ~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~Dr-~Grr~~l~~~~~l~~i~~~~~~~---~~~~~~l~~~r~l 92 (473)
...+.+.+.+++.++..++.+.|.+...+.++++|++.|| +|-|..-++-+....++.++++. .+.+|.++.+||+
T Consensus 66 lq~~fk~d~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv~~GqliFa~Ggi~~aFw~M~~GRF~ 145 (459)
T KOG4686|consen 66 LQIDFKLDSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFVFLGQLIFAAGGISHAFWTMLAGRFL 145 (459)
T ss_pred hhhhhhcccccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhee
Confidence 3456677888999999999999999999999999999996 68887666666666677777654 5899999999999
Q ss_pred HhhhhhhhhhhhhHHHhhcCCCCCchhhHHHHHHHHHHHHHHHHHHhhhccccCCccch------HHHHH----hh---h
Q 012002 93 LGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTSHIKSQWGW------RISLG----LA---G 159 (473)
Q Consensus 93 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~w------r~~f~----~~---~ 159 (473)
.|+|.-...++.+++..-|+..||.+.++|+.....-+|..+--.+ ..++.+..+= +.... +. .
T Consensus 146 FGIGgESlAVaQN~yav~wFKGKELn~vfGlqlSvAR~GstvNf~l---m~~ly~~~~~~~~~~ghT~LG~~l~~~~~tc 222 (459)
T KOG4686|consen 146 FGIGGESLAVAQNKYAVYWFKGKELNFVFGLQLSVARLGSTVNFLL---MPFLYDTMGRMFPGVGHTLLGLWLCFEVKTC 222 (459)
T ss_pred eccCchhhhhhhcceeEEEecCccccchhhHHHHHHHhhceeeeee---cHHHHHHHHHhcccchHHHHHHHHHHHHHHH
Confidence 9999998999999999999999999999999988888887654444 2222111000 00000 00 0
Q ss_pred HHHHHHHHHhhcccCChhhHHhhCChHHHHHHHHHHhCCCCchHHHHHHHHHHhhhhhcccchHHhhcccCchhHHHHHH
Q 012002 160 IPAALLTVGSLLVTDTPNSLIERGRFEEGKAVLRKIRGTDKIEPEFLELVEASRIAKEVKHPFRNLLKRRNRPQLVIAVA 239 (473)
Q Consensus 160 ~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (473)
...++.+...- +. ++.++..+.+..+... +.....+. +...+-+|...
T Consensus 223 ~~slical~lg-~~-----------D~rAerilh~e~g~~G-----------------e~pkLtdv---~~f~ppfw~~~ 270 (459)
T KOG4686|consen 223 KQSLICALSLG-LS-----------DDRAERILHLEEGFLG-----------------EEPKLTDV---NTFYPPFWVLV 270 (459)
T ss_pred HHHHHHHHHhh-hh-----------hhHHHHHHhhhcCccc-----------------CCcccccc---cccCccHHHHH
Confidence 00111110000 00 0111111111000000 00111111 11122266666
Q ss_pred HHHHhhcchhHHHHHhHHHHHHH-cCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHhHHhHHHHHHHHHHHHH
Q 012002 240 LQIFQQCTGINAIMFYAPVLFKT-LGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAII 318 (473)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (473)
...++......-+....|.++++ +|+|+..++.+.+.......+.+.+.|.++||+|++-..+.+..+..+..-....+
T Consensus 271 iicv~yyva~fPFi~lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~F 350 (459)
T KOG4686|consen 271 IICVLYYVAWFPFITLGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGLFF 350 (459)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHh
Confidence 66666666666677777877755 99999999999999999999999999999999999988776655444333222222
Q ss_pred HhhhhccCCcccchhhHHHHHHHHHHHHHhhhccccccccccccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 012002 319 LGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCH 398 (473)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (473)
...+++.......+...... +..|..++.+.|.++.|++.|..+.+.++|-.+.|.+.|.+.|+
T Consensus 351 ------------t~lsPy~~m~~lGLsysllA----cslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~ 414 (459)
T KOG4686|consen 351 ------------TFLSPYTSMTFLGLSYSLLA----CSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADG 414 (459)
T ss_pred ------------hhccHHHHHHHHhhhHHHHH----HHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecC
Confidence 11122222222222111111 23455667788999999999999999999999999999999987
Q ss_pred hh-h---hHHHHHHHHHHHHHHHHHhhccC
Q 012002 399 FK-F---GIFLFFSGWVLIMSCFVFFLLPE 424 (473)
Q Consensus 399 ~~-~---~~~~~~~~~~~~~~~~~~~~~~~ 424 (473)
.+ + ..++...+...+....+.+.+.+
T Consensus 415 ~g~y~~le~ffl~~~~~aL~svgil~~~N~ 444 (459)
T KOG4686|consen 415 DGSYDNLEAFFLIIGLMALTSVGILFYLNK 444 (459)
T ss_pred CCchhhHHHHHHHHHHHHHHHHHHHhheec
Confidence 65 2 24444444444444444444443
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.6e-19 Score=172.99 Aligned_cols=326 Identities=10% Similarity=0.002 Sum_probs=198.7
Q ss_pred cccCCCchhHHHHHHHHHHHHHHHHHHHHhhhh----hhhH-HHHHHHHHHHHHHHHHHHHhhh------HHHHHHHHHH
Q 012002 24 YCKYDNQGLQLFTSSLYLAGLTATFFASYTTRR----LGRR-LTMLIAGIFFIAGVAFNVAAQN------LAMLIVGRIL 92 (473)
Q Consensus 24 ~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~Dr----~Grr-~~l~~~~~l~~i~~~~~~~~~~------~~~l~~~r~l 92 (473)
.+|+++..+|.+..+.-+--++..|+.|.++|| +||| +.++++.+..+++.+++...++ ...+.+.-++
T Consensus 39 ~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p~~s~~~~~~y~~~~~~~ 118 (460)
T PRK11462 39 IFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSMNGKMIYAAITYTL 118 (460)
T ss_pred hhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHH
Confidence 459999999999999999999999999999995 7886 5666777888888777655542 4456667777
Q ss_pred HhhhhhhhhhhhhHHHhhcCC-CCCchhhHHHHHHHHHHHHHHHHHHhhhc-cccC---CccchHHHHHhhhHHHHHHHH
Q 012002 93 LGCGVGFANQAVPLFLSEIAP-TRIRGGLNILFQLNVTIGILFANLVNYGT-SHIK---SQWGWRISLGLAGIPAALLTV 167 (473)
Q Consensus 93 ~G~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~lG~~~~~~~~~~~-~~~~---~~~~wr~~f~~~~~~~~~~~~ 167 (473)
..++.......-.++..|..+ ++||.+..++...+..+|..+++.+.... .... +..+|+....+.+++.+++.+
T Consensus 119 ~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~ii~~i~~~ 198 (460)
T PRK11462 119 LTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLSVVAFMMLA 198 (460)
T ss_pred HHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHH
Confidence 788888888899999999986 68899999999999998887776663221 1111 124788888777777766655
Q ss_pred Hhh-cccCChhhHHhhCChHHHHHHHHHHhCCCCchHHHHHHHHHHhhhhhcccchHHhhcccCchhHHHHHHHHHHhhc
Q 012002 168 GSL-LVTDTPNSLIERGRFEEGKAVLRKIRGTDKIEPEFLELVEASRIAKEVKHPFRNLLKRRNRPQLVIAVALQIFQQC 246 (473)
Q Consensus 168 ~~~-~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (473)
+.+ ..+|.++. + + ++.+.++.++..++++..+.. ....++..
T Consensus 199 i~~~~~kE~~~~-----~--~--------------------------~~~~~~~~l~~~~~Nk~~~~l----~~~~~~~~ 241 (460)
T PRK11462 199 FCFFTTKERVEA-----P--P--------------------------TTTSMREDLRDIWQNDQWRIV----GLLTIFNI 241 (460)
T ss_pred HHHhcceeccCC-----C--c--------------------------cCCCHHHHHHHHhCChHHHHH----HHHHHHHH
Confidence 433 34443210 0 0 000011233445555543322 22222222
Q ss_pred chhHHHHHhHHHHHHH-cCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHhHHhHHHHHHHHHHHHHHhhhhcc
Q 012002 247 TGINAIMFYAPVLFKT-LGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKD 325 (473)
Q Consensus 247 ~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (473)
...........++.+. .| ++...+.+.....++.+++.++++++.||+++|+....+.....+...++.+.
T Consensus 242 ~~~~~~~~~~~y~~~y~~g-~~~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~------- 313 (460)
T PRK11462 242 LAVCVRGGAMMYYVTWILG-TPEVFVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFFV------- 313 (460)
T ss_pred HHHHHHHhHhhhhhhhhcC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHh-------
Confidence 2222222223333332 23 22334456667788889999999999999999988765444333322222211
Q ss_pred CCcccchhhHHHHHHHHHHHHHhhhcccccccccccccccc-------ccchhhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 012002 326 HSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFP-------LETRSAGQSVTVCVNLLFTFVIAQAFLSMLCH 398 (473)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (473)
+...........++.. .......++.+.+.+|..+ .+..|...+.......++..+++.+.|.+.+.
T Consensus 314 -----~~~~~~~~~~~~~l~g-~~~~~~~~l~~~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~iL~~ 387 (460)
T PRK11462 314 -----PMQASITMFVFIFVIG-VLHQLVTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWMLAY 387 (460)
T ss_pred -----chhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111111122222222 2222233444556666644 23335556676788889999999988888765
Q ss_pred hh
Q 012002 399 FK 400 (473)
Q Consensus 399 ~~ 400 (473)
.|
T Consensus 388 ~G 389 (460)
T PRK11462 388 GG 389 (460)
T ss_pred cC
Confidence 43
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.9e-20 Score=177.50 Aligned_cols=330 Identities=15% Similarity=0.135 Sum_probs=233.0
Q ss_pred CcccCCCchhHHHHHHHHHHHHHHHHHHHHhhh----hhhhHH-HHHHHHHHHHHHHHHHHHh-h-------hHHHHHHH
Q 012002 23 NYCKYDNQGLQLFTSSLYLAGLTATFFASYTTR----RLGRRL-TMLIAGIFFIAGVAFNVAA-Q-------NLAMLIVG 89 (473)
Q Consensus 23 ~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~D----r~Grr~-~l~~~~~l~~i~~~~~~~~-~-------~~~~l~~~ 89 (473)
+.+|+++..+|++..+..+..++..|+.|.++| |+|||| .++++..+.+++.+++... + ....+.+.
T Consensus 30 ~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~~~~~~~~~~ 109 (428)
T PF13347_consen 30 DVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSFTAKLVWLFVF 109 (428)
T ss_pred HHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhhhhHHHHHHHH
Confidence 445899999999999999999999999999999 899765 5567888888888887765 4 23445777
Q ss_pred HHHHhhhhhhhhhhhhHHHhhcCC-CCCchhhHHHHHHHHHHHHHHHHHHhhh-ccccCCc---cchHHHHHhhhHHHHH
Q 012002 90 RILLGCGVGFANQAVPLFLSEIAP-TRIRGGLNILFQLNVTIGILFANLVNYG-TSHIKSQ---WGWRISLGLAGIPAAL 164 (473)
Q Consensus 90 r~l~G~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~lG~~~~~~~~~~-~~~~~~~---~~wr~~f~~~~~~~~~ 164 (473)
-++..++.......-.++..|..+ +++|.+..+.-..+..+|.++...+... ...+.+. .+|++..++.+++.++
T Consensus 110 ~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~~iv~~v 189 (428)
T PF13347_consen 110 YILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMALVLAIVGLV 189 (428)
T ss_pred HHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHHHHHHHHHH
Confidence 777899999999999999999997 5689999999998888888655555322 2222221 2799999999888887
Q ss_pred HHHHh-hcccCChhhHHhhCChHHHHHHHHHHhCCCCchHHHHHHHHHHhhhhhcccchHHhhcccCchhHHHHHHHHHH
Q 012002 165 LTVGS-LLVTDTPNSLIERGRFEEGKAVLRKIRGTDKIEPEFLELVEASRIAKEVKHPFRNLLKRRNRPQLVIAVALQIF 243 (473)
Q Consensus 165 ~~~~~-~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (473)
..++. +..+|.++ +. ++++++.+.++.++++++++. +.......+
T Consensus 190 ~~~i~~~~~ke~~~------~~------------------------~~~~~~~~~~~~~~~~~~nr~----~~~l~~~~~ 235 (428)
T PF13347_consen 190 FFLITFFFVKERSV------EV------------------------TEQEKKISLRDSLRSLFRNRP----FRILLLAFF 235 (428)
T ss_pred Hhhhhhheeeeccc------cc------------------------cccccccccccchhhhcccch----HHHHHHHHH
Confidence 77764 44666110 00 001111222445666677766 333444444
Q ss_pred hhcchhHHHHHhHHHHHHH-cCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHhHHhHHHHHHHHHHHHHHhhh
Q 012002 244 QQCTGINAIMFYAPVLFKT-LGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIK 322 (473)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (473)
+............+++.+. .|.+ ...+.......+..+++.++.++++||+|+|+.+..+..+.+++.+.+.+..
T Consensus 236 ~~~~~~~~~~~~~~y~~~~vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~--- 311 (428)
T PF13347_consen 236 LQWLAFALMNTFLPYYFTYVLGNE-GLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFLG--- 311 (428)
T ss_pred HHHhhhhhhhhHHHHHHHHHhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHHH---
Confidence 4444445555556666665 4544 5566777788899999999999999999999999999888888877766642
Q ss_pred hccCCcccchhhHHHHHHHHHHHHHhhhccccccccccccccccc-------cchhhhHHHHHHHHHHHHHHHHHHHHHH
Q 012002 323 VKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPL-------ETRSAGQSVTVCVNLLFTFVIAQAFLSM 395 (473)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (473)
..+.+...+...+ .+..........+++.+|+.+. +..|...|+.+....++..+++.+.+.+
T Consensus 312 ---------~~~~~~~~i~~~l-~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~ 381 (428)
T PF13347_consen 312 ---------PGSPWLVLILFIL-AGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLL 381 (428)
T ss_pred ---------hhhHHHHHHHHHH-hHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHH
Confidence 1223333333333 3333333445677788888763 3458889999999999999999999988
Q ss_pred hhhhh
Q 012002 396 LCHFK 400 (473)
Q Consensus 396 ~~~~~ 400 (473)
.+..|
T Consensus 382 l~~~G 386 (428)
T PF13347_consen 382 LALVG 386 (428)
T ss_pred HHHhC
Confidence 76554
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.6e-20 Score=177.32 Aligned_cols=329 Identities=9% Similarity=-0.003 Sum_probs=198.6
Q ss_pred CCCcccCCCchhHHHHHHHHHHHHHHHHHHHHhhhhh----hhHHHH-HHHHHHHHHHHHHHHHhh-------hHHHHHH
Q 012002 21 DSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRRL----GRRLTM-LIAGIFFIAGVAFNVAAQ-------NLAMLIV 88 (473)
Q Consensus 21 ~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~Dr~----Grr~~l-~~~~~l~~i~~~~~~~~~-------~~~~l~~ 88 (473)
..+.+|++..++|.+.+...+..++..++.|+++||. ||||.. +.+.+...+.+++....+ ..+.+++
T Consensus 35 ~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (448)
T PRK09848 35 YTDVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVLVFWVPTDWSHSSKVVYAYL 114 (448)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHHHHHhCcCCCCcchHHHHHHH
Confidence 3445689999999999999999999999999999996 777644 566555555444432111 2233455
Q ss_pred HHHHHhhhhhhhhhhhhHHHhhcCCC-CCchhhHHHHHHH-----HHHHHHHHHHHhhhccccCCccchHHHHHhhhHHH
Q 012002 89 GRILLGCGVGFANQAVPLFLSEIAPT-RIRGGLNILFQLN-----VTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPA 162 (473)
Q Consensus 89 ~r~l~G~~~~~~~~~~~~~i~~~~~~-~~r~~~~~~~~~~-----~~lG~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~ 162 (473)
..++.+++.+...+...++..+..++ ++|.+..++-..+ ..+|..++|.++...+... ..+|.....+.++++
T Consensus 115 ~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~p~i~~~~g~~~-~~~~~~~~~~~~v~~ 193 (448)
T PRK09848 115 TYMGLGLCYSLVNIPYGSLATAMTQQPQSRARLGAARGIAASLTFVCLAFLIGPSIKNSSPEEM-VSVYHFWTIVLAIAG 193 (448)
T ss_pred HHHHHHHHHHHhcccHhhhhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCch-hhhHHHHHHHHHHHH
Confidence 56778888888888888888877654 6788876665543 3355666666644322110 012222222333333
Q ss_pred HHHHHH-hhcccCChhhHHhhCChHHHHHHHHHHhCCCCchHHHHHHHHHHhhhhhcccchHHhhcccCchhHHHHHHHH
Q 012002 163 ALLTVG-SLLVTDTPNSLIERGRFEEGKAVLRKIRGTDKIEPEFLELVEASRIAKEVKHPFRNLLKRRNRPQLVIAVALQ 241 (473)
Q Consensus 163 ~~~~~~-~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (473)
++..++ ....+|+++. + +++...+..++.++|++. ++...+.
T Consensus 194 ~~~~~~~~~~~~e~~~~---~------------------------------~~~~~~~~~~~~l~~n~~----f~~~~~~ 236 (448)
T PRK09848 194 MVLYFICFKSTRENVVR---I------------------------------VAQPSLKISLQTLKRNRP----LFMLCIG 236 (448)
T ss_pred HHHHHHHHcCcEeccCC---C------------------------------ccCCCHHHHHHHHhCCch----HHHHHHH
Confidence 333322 2334554210 0 000011223556677666 4444444
Q ss_pred HHhhcchhHHHHHhHHHHHHH-cCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHhHHhHHHHHHHHHHHHHHh
Q 012002 242 IFQQCTGINAIMFYAPVLFKT-LGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILG 320 (473)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (473)
.++............|++.++ +|.+....+.......++.+++.++.+++.||+++|+.+..+.++..++.+.+...
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~-- 314 (448)
T PRK09848 237 ALCVLISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWV-- 314 (448)
T ss_pred HHHHHHHHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHc--
Confidence 444455555566667777665 67665555444444466778889999999999999999998877766665544431
Q ss_pred hhhccCCcccchhhHHHHHHHHHHHHHhhhcccccccccccccccccc-------chhhhHHHHHHHHHHHHHHHHHHHH
Q 012002 321 IKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLE-------TRSAGQSVTVCVNLLFTFVIAQAFL 393 (473)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-------~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (473)
+....+.......+...+. ....+..+++.+|..|.+ .+|...|+.+....+|..+++.+.+
T Consensus 315 ----------~~~~~~~~~~~~~l~g~G~-~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g 383 (448)
T PRK09848 315 ----------SVWSLPVALVALAIASIGQ-GVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPA 383 (448)
T ss_pred ----------CchhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 1112222222222222222 222234556666766543 4588999999999999999999998
Q ss_pred HHhhhhh
Q 012002 394 SMLCHFK 400 (473)
Q Consensus 394 ~~~~~~~ 400 (473)
.+.+..|
T Consensus 384 ~~l~~~G 390 (448)
T PRK09848 384 FILGLSG 390 (448)
T ss_pred HHHHHcC
Confidence 8876544
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=4e-19 Score=167.84 Aligned_cols=364 Identities=11% Similarity=0.109 Sum_probs=210.2
Q ss_pred CCcccCCCchhHHHHHHHHHHHHHHHHHHHHhhhhh-hhHHHHHHHHHHHHHHHHHHHHhh-hHHHHHHHHHHHhhhhhh
Q 012002 22 SNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRRL-GRRLTMLIAGIFFIAGVAFNVAAQ-NLAMLIVGRILLGCGVGF 99 (473)
Q Consensus 22 ~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~Dr~-Grr~~l~~~~~l~~i~~~~~~~~~-~~~~l~~~r~l~G~~~~~ 99 (473)
.+++|+++.+.+.+.+.+.....++.+++|+++||+ ||||+++++.++.+++.++++..+ +...+.++..+.++|.|.
T Consensus 37 ~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~~~~~~~~~l~l~li~iG~G~ 116 (493)
T PRK15462 37 TNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGASEIHPSFLYLSLAIIVCGYGL 116 (493)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhccc
Confidence 345799999999999999999999999999999999 999999999999999988777543 223344445555566777
Q ss_pred hhhhhhHHHhhcCCCC--CchhhHHHHHHHHHHHHHHHHHHhhhccccCCccchHHHHHhhhHHHHHHHHHhhcccCChh
Q 012002 100 ANQAVPLFLSEIAPTR--IRGGLNILFQLNVTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVGSLLVTDTPN 177 (473)
Q Consensus 100 ~~~~~~~~i~~~~~~~--~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~ 177 (473)
..+...++++|.+|++ +|..++++.+.+.++|..++|.+ .+.+.+++|||+.|.+.++..++..+.++...+..+
T Consensus 117 ~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l---~g~L~~~~Gw~~~F~iaaigm~l~li~~~~~~~~l~ 193 (493)
T PRK15462 117 FKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIA---CGYAQEEYSWAMGFGLAAVGMIAGLVIFLCGNRHFT 193 (493)
T ss_pred ccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHH---HHHHHhhhChHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 7788889999999875 69999999999999999999999 566666789999999876644443333322111100
Q ss_pred hH-HhhCChHHHHHHHHHHhC----CCCchHHHH-H-HHHHHhhhh------hcccc----hHHhhcccCchhH--HHHH
Q 012002 178 SL-IERGRFEEGKAVLRKIRG----TDKIEPEFL-E-LVEASRIAK------EVKHP----FRNLLKRRNRPQL--VIAV 238 (473)
Q Consensus 178 ~~-~~~~~~~~~~~~~~~~~~----~~~~~~~~~-~-~~~~~~~~~------~~~~~----~~~~~~~~~~~~~--~~~~ 238 (473)
.. ..++++.+.++....... .-....... . ..+...... -...- .....+...++|+ .+.+
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~er~r~~~~~~l 273 (493)
T PRK15462 194 HTRGVNKKVLRATNFLLPNWGWLLVLLVATPALITVLFWKEWSVYALIVATIIGLGVLAKIYRKAENQKQRKELGLIVTL 273 (493)
T ss_pred cCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhhHHHHHHH
Confidence 00 000000000000000000 000000000 0 000000000 00000 0000000011121 2222
Q ss_pred HHHHHhhcchhHHHHHhHHHHHHH------cCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCc--ch-----hHhHHh
Q 012002 239 ALQIFQQCTGINAIMFYAPVLFKT------LGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGR--RM-----LLLEAG 305 (473)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~--~~-----~~~~~~ 305 (473)
.+.....+..+.....-+..+.++ .|++ ....+..+++.+..++.+++..++-.|..| |. -..++.
T Consensus 274 ~~~~~~Fw~~~~Q~~~sl~lfa~~~vd~~~~g~~-ip~~~~qslNp~~ii~l~P~~a~lw~~l~~~~~~~s~~~Kfa~g~ 352 (493)
T PRK15462 274 TFFSMLFWAFAQQGGSSISLYIDRFVNRDMFGYT-VPTAMFQSINAFAVMLCGVFLAWVVKESVAGNRTVRIWGKFALGL 352 (493)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHhccchhccee-eCHHHHHhHhHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHH
Confidence 222222233333333333333333 2332 335667788888888888877777666532 21 255666
Q ss_pred HHHHHHHHHHHHHHhhhhccCCcccchhhHHHHHHHHHHHHHhhhccccccccccccccccccchhhhHHHHHHHH-HHH
Q 012002 306 IQMFLSQTVIAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVN-LLF 384 (473)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~-~~~ 384 (473)
++++++.+++.+..... +. .......+++...++.........|+..+.++++.|++.+|..+|+..... .++
T Consensus 353 ~~~g~~f~~l~~~~~~~--~~----~~~~s~~wl~~~~~~~t~gEl~~sPvgls~~~~laP~~~~g~~mg~w~l~~~~~~ 426 (493)
T PRK15462 353 GLMSAGFCILTLSARWS--AM----YGHSSLPLMVLGLAVMGFAELFIDPVAMSQITRIEIPGVTGVLTGIYMLLSGAIA 426 (493)
T ss_pred HHHHHHHHHHHHHHhhc--CC----CCCcCHHHHHHHHHHHHHHHHHHChHHHHHHHHhChHHHHHHHHHHHHHHHHHHH
Confidence 66666666655433211 10 111222334444555566677778999999999999999999999987644 567
Q ss_pred HHHHHHHHHHH
Q 012002 385 TFVIAQAFLSM 395 (473)
Q Consensus 385 ~~~~~~~~~~~ 395 (473)
..++..+.+..
T Consensus 427 ~~~~g~~~~~~ 437 (493)
T PRK15462 427 NYLAGVIADQT 437 (493)
T ss_pred HHHHHHHHHHh
Confidence 66666665544
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.3e-19 Score=164.85 Aligned_cols=332 Identities=15% Similarity=0.121 Sum_probs=236.2
Q ss_pred cccCCCchhHHHHHHHHHHHHHHHHHHHHhhhh----hhh-HHHHHHHHHHHHHHHHHHHHhhh------HHHHHHHHHH
Q 012002 24 YCKYDNQGLQLFTSSLYLAGLTATFFASYTTRR----LGR-RLTMLIAGIFFIAGVAFNVAAQN------LAMLIVGRIL 92 (473)
Q Consensus 24 ~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~Dr----~Gr-r~~l~~~~~l~~i~~~~~~~~~~------~~~l~~~r~l 92 (473)
.+|++...+|.+..+.-+--++..|+.|.++|| +|| |+.++.+.+..++.+.++-.+++ ....++.-.+
T Consensus 42 v~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~~p~~~~~~k~~ya~vtY~l 121 (467)
T COG2211 42 VFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFITPDFSMTGKLIYALVTYML 121 (467)
T ss_pred ccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHHcCCCcccCcchHHHHHHHHH
Confidence 458999999999999999999999999999995 787 56778888999999999888764 4566677889
Q ss_pred HhhhhhhhhhhhhHHHhhcCC-CCCchhhHHHHHHHHHHHHHHHHHHhhh-ccccCC---ccchHHHHHhhhHHHHHHHH
Q 012002 93 LGCGVGFANQAVPLFLSEIAP-TRIRGGLNILFQLNVTIGILFANLVNYG-TSHIKS---QWGWRISLGLAGIPAALLTV 167 (473)
Q Consensus 93 ~G~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~lG~~~~~~~~~~-~~~~~~---~~~wr~~f~~~~~~~~~~~~ 167 (473)
.+++.......-.++..|+++ ++||.+..++-..+.++|.++...+... ...+.+ ..||+....+.++++.+..+
T Consensus 122 ~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~~vi~~i~~l 201 (467)
T COG2211 122 LGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVLGVIGVILLL 201 (467)
T ss_pred HHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHHHHHHH
Confidence 999999999999999999984 6789999999999999987666554322 222222 46899999998888887777
Q ss_pred Hhhc-ccCChhhHHhhCChHHHHHHHHHHhCCCCchHHHHHHHHHHhhhhhcccchHHhhcccCchhHHHHHHHHHHhhc
Q 012002 168 GSLL-VTDTPNSLIERGRFEEGKAVLRKIRGTDKIEPEFLELVEASRIAKEVKHPFRNLLKRRNRPQLVIAVALQIFQQC 246 (473)
Q Consensus 168 ~~~~-~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (473)
..++ .+|.+... +..+ ...+++.+..+..+++++. +...++..++..
T Consensus 202 ~~~~~v~ER~~~~----~~~~------------------------~~~~~~~~~~~~~~~~Nrp----~~~~l~~~l~~~ 249 (467)
T COG2211 202 FCFFNVKERVVET----QPTK------------------------TGVKLKLKDSFLLIFKNRP----LLLLLLMNLLLF 249 (467)
T ss_pred HHHHHhhcccCcc----ccCc------------------------ccccccHHHHHHHHHccch----HHHHHHHHHHHH
Confidence 6554 56643100 0000 0001111222334556665 444444555555
Q ss_pred chhHHHHHhHHHHHHH-cCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHhHHhHHHHHHHHHHHHHHhhhhcc
Q 012002 247 TGINAIMFYAPVLFKT-LGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKD 325 (473)
Q Consensus 247 ~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (473)
.+.........++.+. .|.+.............+.+++.++..++.+|+|+|+++..+.++..++.+++.+.
T Consensus 250 ~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~------- 322 (467)
T COG2211 250 IAFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFT------- 322 (467)
T ss_pred HHHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhh-------
Confidence 5555555555666554 67777777777777778888889999999999999999999988888888777765
Q ss_pred CCcccchhhHHHHHHHHHHHHHhhhcccccccccccccccc-------ccchhhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 012002 326 HSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFP-------LETRSAGQSVTVCVNLLFTFVIAQAFLSMLCH 398 (473)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (473)
+.....+.++..+ ..........++.|++.+|... .+..|...|....+.-+|.+++..+.|+..+.
T Consensus 323 -----~~~~~~l~~~~~~-i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~L~~ 396 (467)
T COG2211 323 -----PAGSVVLIVVALI-IAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGWILGA 396 (467)
T ss_pred -----cCcchHHHHHHHH-HHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222333333323 3333334445688888888753 33457888888889999999999999999877
Q ss_pred hh
Q 012002 399 FK 400 (473)
Q Consensus 399 ~~ 400 (473)
.|
T Consensus 397 ~G 398 (467)
T COG2211 397 IG 398 (467)
T ss_pred cC
Confidence 65
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.2e-19 Score=161.43 Aligned_cols=277 Identities=12% Similarity=0.070 Sum_probs=189.7
Q ss_pred HHhhhHHHHHHHHHHHhhhhhhhhhhhhHHHhhcCCCCCchhhHHHHHHHHHHHHHHHHHHhhhccccC--C--------
Q 012002 78 VAAQNLAMLIVGRILLGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTSHIK--S-------- 147 (473)
Q Consensus 78 ~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~--~-------- 147 (473)
+...+|+.++++-++.|.|.+...+..+.++++..+++++++.+++.+..+++|..++|.++....... +
T Consensus 5 ~~~~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~ 84 (310)
T TIGR01272 5 ASQRYYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATA 84 (310)
T ss_pred HHhhHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhh
Confidence 456789999999999999999999999999999999999999999999999999999999965433211 0
Q ss_pred ---ccchHHHHHhhhHHHHHHHHHhhcc--cCChhhHHhhCChHHHHHHHHHHhCCCCchHHHHHHHHHHhhhhhcccch
Q 012002 148 ---QWGWRISLGLAGIPAALLTVGSLLV--TDTPNSLIERGRFEEGKAVLRKIRGTDKIEPEFLELVEASRIAKEVKHPF 222 (473)
Q Consensus 148 ---~~~wr~~f~~~~~~~~~~~~~~~~~--~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (473)
..+|+++|++.+.+.++..+.+.+. ||.++ ++.++ ..+ + +....
T Consensus 85 ~~~~~~~~~~yl~ia~~~~~~~i~~~~~~~p~~~~-----~~~~~-----------------------~~~--~-~~~~~ 133 (310)
T TIGR01272 85 NAEAAKVHTPYLLLAGALAVLAIIFAFLPLPELQE-----ADVAR-----------------------VSS--G-DTTQK 133 (310)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCc-----ccccc-----------------------ccc--c-cccch
Confidence 1479999997776655555554443 44210 00000 000 0 00011
Q ss_pred HHhhcccCchhHHHHHHHHHHhhcchhHHHHHhHHHHHHH---cCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCcch
Q 012002 223 RNLLKRRNRPQLVIAVALQIFQQCTGINAIMFYAPVLFKT---LGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRM 299 (473)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~ 299 (473)
++.++++. ++...+..++.......+..|.+.++++ +|+++.+++...+....+.++|+++.+++.||+++|+
T Consensus 134 ~~~~~~~~----~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~ 209 (310)
T TIGR01272 134 TSAFQFTH----LVLGALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGR 209 (310)
T ss_pred hhHHhhHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHH
Confidence 12333322 5556677777777788888899988864 5899999999999999999999999999999999999
Q ss_pred hHhHHhHHHHHHHHHHHHHHhhhhccCCcccchhhHHHHHHHHHHHHHhhhccccccccccccccccccchhhhHHHHHH
Q 012002 300 LLLEAGIQMFLSQTVIAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVC 379 (473)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 379 (473)
.+..+..+..++..+.... +..... ......+ .+.....|...+...+..|++ .+++.++. .
T Consensus 210 ~l~~~~~l~~~~~~l~~~~------------~~~~~~---~~~~l~g-~~~s~i~P~~~s~a~~~~~~~-~~~asai~-~ 271 (310)
T TIGR01272 210 YLAFNAFLAVLLSIGAALT------------HGYVAM---WFVLALG-LFNSIMFPTIFSLALNALGRH-TSQGSGIL-C 271 (310)
T ss_pred HHHHHHHHHHHHHHHHHHc------------CCHHHH---HHHHHHH-HHHHHHHHHHHHHHHhhhhhh-hhhhHHHH-H
Confidence 8877766665554333221 111111 1112222 222233355555556766654 45666664 6
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhHHHHH
Q 012002 380 VNLLFTFVIAQAFLSMLCHFKFGIFLFF 407 (473)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (473)
.+.+|+.+.|++.|.+.|..+....+.+
T Consensus 272 ~~~~Gg~i~P~l~G~lad~~g~~~a~~v 299 (310)
T TIGR01272 272 LAIVGGAIVPLLQGSLADCLGIQLAFAL 299 (310)
T ss_pred HHHhcchHHHHHHHHHHHhccchHHHHH
Confidence 7789999999999999998776555443
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.7e-19 Score=159.74 Aligned_cols=363 Identities=13% Similarity=0.122 Sum_probs=247.8
Q ss_pred CCcccCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHh------hhHH--HHHHHHHHH
Q 012002 22 SNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVAA------QNLA--MLIVGRILL 93 (473)
Q Consensus 22 ~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~l~~i~~~~~~~~------~~~~--~l~~~r~l~ 93 (473)
+..++ +....-|+.-+|++.+....+++-|+.||+|-|...+++..+.++|..+-..+ +.++ ....+..+.
T Consensus 72 ~~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~ia 150 (480)
T KOG2563|consen 72 NSFYG-SSSAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGTVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIA 150 (480)
T ss_pred HHHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHHHHHHHHHHHhhhccCccccccchhhhhHHhHHHH
Confidence 34446 67778899999999999999999999999999999999999999999998776 3345 667889999
Q ss_pred hhhhhhhhhhhhHHHhhcCCCCCchhhHHHHHHHHHHHHHHHHHHhhhccccC---CccchHHH--HHhhhHHHHHHHHH
Q 012002 94 GCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTSHIK---SQWGWRIS--LGLAGIPAALLTVG 168 (473)
Q Consensus 94 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~---~~~~wr~~--f~~~~~~~~~~~~~ 168 (473)
+.++-.....-..+..-|++++||..+..+-.++..+|.+++.++...+-.-. ++..|... |+.....+.+.+++
T Consensus 151 a~Aq~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~llppilV~~~~~~~~~~~~~~~~f~~~~~l~~l~l~l 230 (480)
T KOG2563|consen 151 AAAQPFILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLPPILVPSSKDSEDNSWLFFTLFLGVECLAALLLAL 230 (480)
T ss_pred HHhhhHhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhccceecCCCCCcchhHHHHHHHHHHHHHHHHHHHHH
Confidence 99988888777888899999999999999999998899888888744332222 34567653 44444443333333
Q ss_pred -hhcccCChhhHHhhCChHHHHHHHHHHhCCCCchHHHHHHHHHHhhhhhcccchHHhhcccCchhHHHHHHHHHHhhcc
Q 012002 169 -SLLVTDTPNSLIERGRFEEGKAVLRKIRGTDKIEPEFLELVEASRIAKEVKHPFRNLLKRRNRPQLVIAVALQIFQQCT 247 (473)
Q Consensus 169 -~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (473)
.+..++.|+..... .. ....+.+-..+.++.++++. +++..+.+.....
T Consensus 231 ~~~~~~~~P~tPps~-----------------------s~---~~~~~~~f~~si~~~~~n~~----F~il~~~ygi~~g 280 (480)
T KOG2563|consen 231 VLFVFTKKPPTPPSA-----------------------SQ---AALQDASFPKSIKSCFKNRQ----FIILAICYGIGLG 280 (480)
T ss_pred HHHhcCCCCCCCCch-----------------------hH---hhhhcCcHHHHHHHHHcCcc----HHHHHHHHhhhHH
Confidence 22333333210000 00 00001112445677777777 7777777776666
Q ss_pred hhHHHHHhHHHHHHHcCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCcchh-HhHHhHHHHHHHHHHHHHHhhhhccC
Q 012002 248 GINAIMFYAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRML-LLEAGIQMFLSQTVIAIILGIKVKDH 326 (473)
Q Consensus 248 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (473)
.++...+.+...+...|++...+|.......+++++++.+.|.+.||.++-+. ..+......++...+....
T Consensus 281 ~F~~l~~~l~~~l~~sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~~~~l~~~t------- 353 (480)
T KOG2563|consen 281 LFNSLSTLLNLALCPSGYEGVFAGYIGALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALVGTLMLLTCT------- 353 (480)
T ss_pred HHHHHHHHhhhccccccCCccccchhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhh-------
Confidence 66777666665556678888899999999999999999999999999876443 3333333333321111111
Q ss_pred CcccchhhHHHHHHHHHHHHHhhhccccccccccccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhh----hh
Q 012002 327 SEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHFK----FG 402 (473)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 402 (473)
......+++...+...+.+..+..|+..-+..|..-+..-++..|+.+..+++.+.+...+.+...+..+ +.
T Consensus 354 ----~~~~~~viv~~t~~~~g~~~~~~~Pig~ElgvE~TyPv~E~tSsGll~~~gq~f~~~~~~~~~~~~~~~~~~~~~~ 429 (480)
T KOG2563|consen 354 ----LFLGDSVIVFTTCGLLGFFGTGYLPIGFELGVETTYPVAEGTSSGLLNLSGQIFGVILVFIMGILAEDLGPPGNTF 429 (480)
T ss_pred ----ccCCceEehhhhHHHHHHhhcCCCCcceeeeeeeccccCCcccceeEEeehhHHHHHHHHHHHHHhhccCCCCCCc
Confidence 1112223444555566667778888988888998766667888899999999999999999998887766 44
Q ss_pred HHHHHHHHHHHH-HHHHHhhccCCC
Q 012002 403 IFLFFSGWVLIM-SCFVFFLLPETK 426 (473)
Q Consensus 403 ~~~~~~~~~~~~-~~~~~~~~~~~~ 426 (473)
...+......+. .++..++.++.+
T Consensus 430 ~~~i~~~~~~~l~~~lva~~r~~y~ 454 (480)
T KOG2563|consen 430 PANIFLTVSALLGAILVAFFRPDYR 454 (480)
T ss_pred cchhHhHHHHHHHHHHHhhhhhhHH
Confidence 334444444444 444444444333
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.2e-18 Score=152.24 Aligned_cols=355 Identities=12% Similarity=0.025 Sum_probs=242.1
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhHH-HHHHHHHHHHHHHHHHHHhhh--HH-HHHHHHHHHhhhhhhhhhh
Q 012002 28 DNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRL-TMLIAGIFFIAGVAFNVAAQN--LA-MLIVGRILLGCGVGFANQA 103 (473)
Q Consensus 28 s~~~~~~~~s~~~~~~~~~~~~~g~l~Dr~Grr~-~l~~~~~l~~i~~~~~~~~~~--~~-~l~~~r~l~G~~~~~~~~~ 103 (473)
+.+..+...++..+..++.+|+.|.++|+.|+|| .+-....+..++..+..++++ ++ ..++.-.+..++.....+.
T Consensus 56 ~~a~~gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~~s~~~~~l~~~il~~i~~~~s~Vf 135 (438)
T COG2270 56 STAYWGYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPPGSYLLLLLLFLILASIGFEFSNVF 135 (438)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhcchhhee
Confidence 4567888899999999999999999999999765 555666666667777777655 44 4555678888999999999
Q ss_pred hhHHHhhcCCCCCchhhHHHHHHHHHHHHHHHHHHhhhcccc---------------CCccchHHHHHhhhHHHHHHHHH
Q 012002 104 VPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTSHI---------------KSQWGWRISLGLAGIPAALLTVG 168 (473)
Q Consensus 104 ~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~---------------~~~~~wr~~f~~~~~~~~~~~~~ 168 (473)
-.+++.+..++++-++..++-.....+|.++.-+........ .+...=|..+.+.++..++..+-
T Consensus 136 yds~L~~~~~k~~~~riS~lg~~~gylgs~i~li~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ri~~~l~A~W~li~~iP 215 (438)
T COG2270 136 YDSMLPRLTTKDNMGRISGLGWALGYLGSVILLIFVVLGFALGQQTGITIILLGLPPADGEDVRITGLLAALWWLLFALP 215 (438)
T ss_pred hhhHhhhhcCccccCcccccccccccccchHHHHHHHHHHhcccccceeEEeeccCccccccchhHHHHHHHHHHHHHhH
Confidence 999999999998888887776666666666555442111111 13345677888877776665554
Q ss_pred -hhcccCChhhHHhhCChHHHHHHHHHHhCCCCchHHHHHHHHHHhhhhhcccchHHhhcccCchhHHHHHHHHHHhhcc
Q 012002 169 -SLLVTDTPNSLIERGRFEEGKAVLRKIRGTDKIEPEFLELVEASRIAKEVKHPFRNLLKRRNRPQLVIAVALQIFQQCT 247 (473)
Q Consensus 169 -~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (473)
++.+++.++-. ....+ .-...-++-+.+++++.+++. +..+.+..+...-
T Consensus 216 m~~~v~~~~~~~---~~~~~----------------------~l~~g~k~L~~t~k~i~~~~~----i~~FLiA~~~~~D 266 (438)
T COG2270 216 MILNVHDAEKIS---SPPPT----------------------ALRNGFKELKSTFKEIRGRKN----LVLFLIARFFYID 266 (438)
T ss_pred HHhccccccccc---ccchH----------------------HHHHHHHHHHHHHHHHhcccc----hHHHHHHHHHHHh
Confidence 44555544200 00000 000111222345555555554 5556666666666
Q ss_pred hhHHHHHhHHHHHH-HcCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHhHHhHHHHHHHHHHHHHHhhhhccC
Q 012002 248 GINAIMFYAPVLFK-TLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKDH 326 (473)
Q Consensus 248 ~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (473)
+..+.......+-. ++|++..+...+.....+..++|+++.|++.||+|.|+++..+.++..+..+......
T Consensus 267 Gv~til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~~------- 339 (438)
T COG2270 267 GVNTILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFLE------- 339 (438)
T ss_pred hHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHcc-------
Confidence 77777777777776 6999999999999999999999999999999999999988887776666555544431
Q ss_pred CcccchhhHHHHHHHHHHHHHhhhccccccccccccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhh-HHH
Q 012002 327 SEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHFKFG-IFL 405 (473)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 405 (473)
.....|.. .+..+.+..+.....-++..+.+|+++.+..+|+++..+...+.++|...+.+.+.++.. .-+
T Consensus 340 ----~~~~f~i~----gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~ 411 (438)
T COG2270 340 ----GELDFWIL----GLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAGV 411 (438)
T ss_pred ----ccHHHHHH----HHHHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHH
Confidence 11112222 122222233333466788899999999999999999999999999999999998877632 333
Q ss_pred HHHHHHHHHHHHHHhhccCCC
Q 012002 406 FFSGWVLIMSCFVFFLLPETK 426 (473)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~ 426 (473)
....+.++.+.+.++.+|..+
T Consensus 412 ~~i~vll~iGl~~L~~v~~~~ 432 (438)
T COG2270 412 LSIIVLLLIGLLLLLRVKVPG 432 (438)
T ss_pred HHHHHHHHhhHhhEEeecCCC
Confidence 344444555566666666543
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.4e-18 Score=155.71 Aligned_cols=352 Identities=18% Similarity=0.143 Sum_probs=210.8
Q ss_pred CcccCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHH--HHHHHHH-HHh----hhHH-HHHHHHHHHh
Q 012002 23 NYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFF--IAGVAFN-VAA----QNLA-MLIVGRILLG 94 (473)
Q Consensus 23 ~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~l~--~i~~~~~-~~~----~~~~-~l~~~r~l~G 94 (473)
++.|+|.+++|.+.++..+...+.+++.|.++||+|.||-++....+. ..+.+.. .+. .|++ ..+++-+..|
T Consensus 36 ~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i~~l~~l~~pff~~v~~pll~~n~~lg~iig~i~l~ 115 (412)
T PF01306_consen 36 QVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFIAILLLLFGPFFIYVFGPLLQSNFWLGAIIGGIYLG 115 (412)
T ss_dssp HHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHHHHHHHTCHHHHHHTHHHHHHTT-HHHHHHTTTTTT
T ss_pred cccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345999999999999999999999999999999999766554333222 2222221 222 2332 2333344455
Q ss_pred hhhhhhhhhhhHHHhhcCCCCCchhhHHHHHHHHHHHHHHHHHHhhhccccCCccchHHHHHhhhHHHHHHHHHhhcc-c
Q 012002 95 CGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVGSLLV-T 173 (473)
Q Consensus 95 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~-~ 173 (473)
+...+..|+.-+++.++. ++.+.-.|-..+..++|.+++..+++.+-. .+-+..||+....+++..++.++. |
T Consensus 116 ~~f~~~~~~~Ea~~er~s--r~~~feYG~~R~wGSig~ai~s~~~G~L~~----i~p~~~fwi~s~~~~il~lll~~~~~ 189 (412)
T PF01306_consen 116 LVFNAGVPLSEAYAERVS--RRNGFEYGRARMWGSIGFAIASLLAGILFN----INPNIIFWIASAAAIILLLLLLLLKP 189 (412)
T ss_dssp TTTTTHHHHHHHHHHHHH--HHHSS-HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHSS--
T ss_pred HHHcccchHHHHHHHHHH--HHhcCCcchHHHHhhHHHHHHHHHhheeee----eCccHHHHHHHHHHHHHHHHHHHcCC
Confidence 555556666666666654 234455666677777777777777443322 244577887766666555554433 3
Q ss_pred CChhhHHhhCChHHHHHHHHHHhCCCCchHHHHHHHHHHhhhhhcccch---HHhhcccCchhHHHHHHHHHHhhcchhH
Q 012002 174 DTPNSLIERGRFEEGKAVLRKIRGTDKIEPEFLELVEASRIAKEVKHPF---RNLLKRRNRPQLVIAVALQIFQQCTGIN 250 (473)
Q Consensus 174 e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (473)
+.++.....+. +..++++.+. .+++|.++ +|.+.+........+.
T Consensus 190 ~~~~~~~~~~~----------------------------~~~~~~~~~~~~~~~l~k~~~----fw~~~l~v~g~~~~Y~ 237 (412)
T PF01306_consen 190 DVPPQAEVADA----------------------------LGAKKDKVSLKDVLSLFKMRN----FWFFVLFVIGVAAIYD 237 (412)
T ss_dssp -SSSSS-SSTT----------------------------SSS------HHHHHHHTTSHH----HHHHHHHHHHHHHHHH
T ss_pred cCchhhhhhcc----------------------------cccCCCCCcHHHHHHHhcchh----HHHHHHHHHHHHHHHH
Confidence 33311100000 0001112223 34455554 5555555555555566
Q ss_pred HHHHhHHHHHHHc----CCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHhHHhHHHHHHHHHHHHHHhhhhccC
Q 012002 251 AIMFYAPVLFKTL----GFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKDH 326 (473)
Q Consensus 251 ~~~~~~~~~~~~~----g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (473)
.+....+.+...+ +.+....|+..+..-+..++...+.+++.+|+|.|+.+.++...+.+-....++..
T Consensus 238 vfdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~~------- 310 (412)
T PF01306_consen 238 VFDQQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFAT------- 310 (412)
T ss_dssp HHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT---------
T ss_pred HHHHHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhhc-------
Confidence 6665566666543 23345678888888899999999999999999999999999988888877776642
Q ss_pred CcccchhhHHHHHHHHHHHHHhhhccccccccccccccccccchhhhHHHH-HHHHHHHHHHHHHHHHHHhhhhhhh-HH
Q 012002 327 SEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVT-VCVNLLFTFVIAQAFLSMLCHFKFG-IF 404 (473)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 404 (473)
..+.....-.+-..-+..... ...-|+++.+|++..++...+. +...+++..+.+.+.|.+.|+.|+. .+
T Consensus 311 -------~~~~i~~~klLH~~e~~l~lv-a~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~ty 382 (412)
T PF01306_consen 311 -------NPWVISLIKLLHALEFPLLLV-AAFKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTY 382 (412)
T ss_dssp -------SHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -------chHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHH
Confidence 222233332333322222222 2345778999999988988886 5678899999999999999999976 45
Q ss_pred HHHHHHHHHHHHHHHhhccCCCC
Q 012002 405 LFFSGWVLIMSCFVFFLLPETKN 427 (473)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~ 427 (473)
++.+.+.....++..+.+++.++
T Consensus 383 limg~iv~~~~li~~f~l~~~~~ 405 (412)
T PF01306_consen 383 LIMGLIVLPFTLISAFTLKKDKK 405 (412)
T ss_dssp HHHHHHHHHHHHHHHHHS--SSS
T ss_pred HHHHHHHHHHHHHheeeecCCCc
Confidence 55555555555556666655443
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.3e-17 Score=151.96 Aligned_cols=365 Identities=16% Similarity=0.121 Sum_probs=228.1
Q ss_pred CCCCcccCCCchhHHHHHHHHHHHHHHHHHHHHhhhhh-hhHHHHHHHHHHHHHHHHHHHHhh--hHHHHHHHHHHHhhh
Q 012002 20 DDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRRL-GRRLTMLIAGIFFIAGVAFNVAAQ--NLAMLIVGRILLGCG 96 (473)
Q Consensus 20 ~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~Dr~-Grr~~l~~~~~l~~i~~~~~~~~~--~~~~l~~~r~l~G~~ 96 (473)
+..+.+|+|+++..-+.+.|..-.-...+++|+++||+ |+|+++..|.+++.+|.++.+.+. +...+.++-++.++|
T Consensus 51 ~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~~~~~~gl~i~L~~I~iG 130 (498)
T COG3104 51 QLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISSVSGPGGLYIGLALIIVG 130 (498)
T ss_pred hccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHhc
Confidence 34444789999999999999998899999999999996 999999999999999999999984 788999999999999
Q ss_pred hhhhhhhhhHHHhhcCCCCC--chhhHHHHHHHHHHHHHHHHHHhhhccccCCccchHHHHHhhhHHHHHHHHHhhcccC
Q 012002 97 VGFANQAVPLFLSEIAPTRI--RGGLNILFQLNVTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVGSLLVTD 174 (473)
Q Consensus 97 ~~~~~~~~~~~i~~~~~~~~--r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e 174 (473)
.|..-+...+++.|.+|+++ |...+++++++.++|..++|++ ..++.++.||+..|...++-..+.++..+..+.
T Consensus 131 ~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i---~~~~~~~~g~~~gF~~aavGm~~gl~~f~~~~r 207 (498)
T COG3104 131 TGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPII---TGLLAINYGWHVGFGLAAVGMIIGLVIFLLGRR 207 (498)
T ss_pred cccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHH---HHHHHHhhCHHHHHHHHHHHHHHHHHHHHHccc
Confidence 99999999999999998643 7788999999999999999999 777778899999999888766666555443321
Q ss_pred ---------ChhhHHhhCChHHHHHHHHHHhCCC---Cc-hHHHHHHHH------HH---hhhhhcccchHHhhcccCch
Q 012002 175 ---------TPNSLIERGRFEEGKAVLRKIRGTD---KI-EPEFLELVE------AS---RIAKEVKHPFRNLLKRRNRP 232 (473)
Q Consensus 175 ---------~p~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~------~~---~~~~~~~~~~~~~~~~~~~~ 232 (473)
.|..+..+................. .. ......... .. .+..+.++...+.-|....-
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~er~r~~~~~ 287 (498)
T COG3104 208 HVKGIGGVPDPNPLSFNFLLPVLGGLVVMILAALLTLLLNQNTFSGVLLVISILIAIIYFAEAFRSPKVFDERRRLLAAI 287 (498)
T ss_pred hhcCCCCCCCccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHHHHHH
Confidence 1111111111101000000000000 00 000000000 00 00000000000000000001
Q ss_pred hHHHHHHHHHHhhcchhHHHHHhHHHHHHH--cCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCcc-------hhHhH
Q 012002 233 QLVIAVALQIFQQCTGINAIMFYAPVLFKT--LGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRR-------MLLLE 303 (473)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~-------~~~~~ 303 (473)
++++...+.+.+..-....+..|.....++ +|++ ....+..+.+.+.-++..++..++..|.+++ .-+.+
T Consensus 288 ~Lfl~~~iFW~~~~Q~~ssl~~~a~~~v~~~~~g~~-vp~~~fQslNp~~Iii~~pI~a~l~~~l~~~~~~ps~~~KFal 366 (498)
T COG3104 288 PLFLFAVIFWALYEQMGSSLNLYADRNVNRQIFGFE-VPPAWFQSLNPFFIILFSPILAALWTKLGRGNKQPSTPIKFAL 366 (498)
T ss_pred HHHHHHHHHHHHHHhccchHHHHHHHhhccccccee-cCHHHHHhhCHHHHHHHHHHHHHHHhHhhcCCCCCCcchHHHH
Confidence 112222233333333333444444443332 3332 3455678888888888888888888775433 12344
Q ss_pred HhHHHHHHHHHHHHHHhhhhccCCcccchhhHHHHHHHHHHHHHhhhccccccccccccccccccchhhhHHHHHHHHHH
Q 012002 304 AGIQMFLSQTVIAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLL 383 (473)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 383 (473)
+..+++.+.+++....... ..+ +...+..+.+...++.........|+..+++..+.|+...+..+++.......
T Consensus 367 Gl~l~g~~fl~l~~~~~~~--~~~---~~~~s~~~lil~y~l~s~gEL~iSpvGLs~~t~laP~~~~s~~ma~wfLt~a~ 441 (498)
T COG3104 367 GLILAGLGFLILLLAGIWF--GGP---SGLVSVWWLVLSYVLQSFGELFISPVGLSMVTKLAPPALKSFIMAMWFLTVAA 441 (498)
T ss_pred HHHHHHHHHHHHHHHHHhh--cCC---CCCcCHHHHHHHHHHHHHHHHHhCHHHHHHHHHhChHHHHHHHHHHHHHHHHH
Confidence 4444455544444431111 110 22233444555566666677777788889999999999999999998888888
Q ss_pred HHHHHHHHHH
Q 012002 384 FTFVIAQAFL 393 (473)
Q Consensus 384 ~~~~~~~~~~ 393 (473)
+..++..+.+
T Consensus 442 ~~~l~g~va~ 451 (498)
T COG3104 442 GQTLGGQVAG 451 (498)
T ss_pred HHHhhceecc
Confidence 8887777766
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=99.74 E-value=7.7e-15 Score=131.41 Aligned_cols=331 Identities=12% Similarity=0.052 Sum_probs=211.7
Q ss_pred CCCcccCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhh-----hHHH-HHHHHHHHHHHHHHHHHh-----h-------h
Q 012002 21 DSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRRLG-----RRLT-MLIAGIFFIAGVAFNVAA-----Q-------N 82 (473)
Q Consensus 21 ~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~Dr~G-----rr~~-l~~~~~l~~i~~~~~~~~-----~-------~ 82 (473)
|-.|++++..-.+.+.+...+... ..+.+|+.+|+.+ ||.. +..|..+...+..+..++ . +
T Consensus 6 MIvEL~vpA~lv~~lval~~~~ap-~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~~ 84 (403)
T PF03209_consen 6 MIVELGVPAWLVALLVALHYLVAP-LRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSGP 84 (403)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHH-HHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcccccccccc
Confidence 445789999999999998888765 5899999999999 7754 455666666666665553 2 2
Q ss_pred H--H--HHHHHHHHHhhhhhhhhhhhhHHHhhcCCCCCchhhHHHHHHHHHHHHHHHHHHhhhccccCCccchHHHHHh-
Q 012002 83 L--A--MLIVGRILLGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTSHIKSQWGWRISLGL- 157 (473)
Q Consensus 83 ~--~--~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~wr~~f~~- 157 (473)
. + ...+.-.+.|+|.+...+...++++|..|+++|+++.++.....-+|.+++..+ .+.+.+.++-.-..-+
T Consensus 85 ~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~---~g~lL~~~s~~rL~~v~ 161 (403)
T PF03209_consen 85 FWLGLALAALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIV---FGRLLDPFSPERLIQVI 161 (403)
T ss_pred cHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHH---HHHHccccCHHHHHHHH
Confidence 2 2 334456788999999999999999999999999999999999999999999998 5555554443322222
Q ss_pred --hhHHHHHHHHHhhcccCChhhHHhhCChHHHHHHHHHHhCCCCchHHHHHHHHHHhhhhhcccchHHhhcccCchhHH
Q 012002 158 --AGIPAALLTVGSLLVTDTPNSLIERGRFEEGKAVLRKIRGTDKIEPEFLELVEASRIAKEVKHPFRNLLKRRNRPQLV 235 (473)
Q Consensus 158 --~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (473)
.+++.++..++..+-.|.+.. .... ..++++......+++++.++..++.+
T Consensus 162 ~~~a~i~~~l~~ia~wg~E~r~~-~~~~--------------------------~~~~~~~~f~~a~~~~~~~~~a~~f~ 214 (403)
T PF03209_consen 162 QGVALIALLLNLIALWGQEPRRS-RRAA--------------------------AAERPRPPFREAWRQVWASPQARRFF 214 (403)
T ss_pred HHHHHHHHHHHHHHHHhcccCCc-cccc--------------------------CCCCCCccHHHHHHHHHhCCChhHHH
Confidence 222222222232332332210 0000 00011112234556666677766655
Q ss_pred HHHHHHHHhhcchhHHHHHhH-HHHHHHcCCCCcchHHHHHHHHHHHHHHHHHHHHHHh-hcCcchhHhHHhHHHHHHHH
Q 012002 236 IAVALQIFQQCTGINAIMFYA-PVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVD-KVGRRMLLLEAGIQMFLSQT 313 (473)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d-~~~~~~~~~~~~~~~~~~~~ 313 (473)
...++..+.. +.-...+ |+=-+.+|++..+...++...+.+.+++....+++.. |.++++...++.....++..
T Consensus 215 ~fl~l~t~a~----~~QD~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~ 290 (403)
T PF03209_consen 215 VFLFLGTLAF----FMQDVILEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFA 290 (403)
T ss_pred HHHHHHHHHH----HhhHHHcCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHH
Confidence 5555444322 2222222 3333458999999999999999999999999998776 57777777777777777666
Q ss_pred HHHHHHhhhhccCCcccchhhHHHHHHHHHHHHHhhhccccccccccccccccccchhhhHHHHHHHHHHHHHHHHHHHH
Q 012002 314 VIAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFL 393 (473)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (473)
++..... ....+.......+++.+.+.... -..+.+-+..+++..|..+|.......+...++..+.|
T Consensus 291 lii~a~~-----------~~~~~~~~~~~~l~G~g~G~f~v-gals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG 358 (403)
T PF03209_consen 291 LIILAGP-----------LGSPWLFRPGVFLLGLGNGLFTV-GALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGG 358 (403)
T ss_pred HHHHHHh-----------cccchHHHHHHHHHHHhhhHHHH-HHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 6555431 11222222222222222221111 11223347777888999999999999998888888888
Q ss_pred HHhhh
Q 012002 394 SMLCH 398 (473)
Q Consensus 394 ~~~~~ 398 (473)
.+.|-
T Consensus 359 ~~~D~ 363 (403)
T PF03209_consen 359 ALRDL 363 (403)
T ss_pred HHHHH
Confidence 87764
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.4e-16 Score=151.30 Aligned_cols=290 Identities=15% Similarity=0.132 Sum_probs=210.2
Q ss_pred hhhccccCCCCCcccCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHh-----------
Q 012002 12 VYRRTQQGDDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVAA----------- 80 (473)
Q Consensus 12 ~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~l~~i~~~~~~~~----------- 80 (473)
.|.+.....+++.++++.++.|++.+.+=++..+...+..+..-|..|-+.+-+|+++++++++++++-
T Consensus 114 ~y~~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgsll~alPHf~~~~y~~~~ 193 (735)
T KOG3626|consen 114 GYFNSVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGSLLFALPHFFSGPYEYEL 193 (735)
T ss_pred hhhhhhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHHHHHhChHHhcCcchhhh
Confidence 344445568999999999999999999999999999999999999999999999999999999998763
Q ss_pred ---------h---------------------------h----HH-HHHHHHHHHhhhhhhhhhhhhHHHhhcCCCCCchh
Q 012002 81 ---------Q---------------------------N----LA-MLIVGRILLGCGVGFANQAVPLFLSEIAPTRIRGG 119 (473)
Q Consensus 81 ---------~---------------------------~----~~-~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~ 119 (473)
+ + ++ .++++.++.|+|....++...+|+-|...+++-+.
T Consensus 194 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~Spl 273 (735)
T KOG3626|consen 194 EVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTLGISYIDDNVKKKNSPL 273 (735)
T ss_pred hhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccCCCccccccccccCCcH
Confidence 0 0 22 56778999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhccccCCcc----------------chHHHHHhhhHHHHHHHHHhhcccCChhhHHhhC
Q 012002 120 LNILFQLNVTIGILFANLVNYGTSHIKSQW----------------GWRISLGLAGIPAALLTVGSLLVTDTPNSLIERG 183 (473)
Q Consensus 120 ~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~----------------~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~ 183 (473)
.+|+......+|.++|-+++.+...+...+ .|..-|++.+.+.++..+.++++|...+...++
T Consensus 274 Ylgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a~p~f~fPk~lp~~~~~- 352 (735)
T KOG3626|consen 274 YLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFSAVPLFFFPKELPKSQKR- 352 (735)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhCcccCcccccc-
Confidence 999999999999999999977664432211 287888888888888888888888654221111
Q ss_pred ChHHHHHHHHHHhCCCCchHHHHHHHHHHhhhhhcccchHHhhcccCchhHHHHHHHHHHhhcchhHHHHHhHHHHHHH-
Q 012002 184 RFEEGKAVLRKIRGTDKIEPEFLELVEASRIAKEVKHPFRNLLKRRNRPQLVIAVALQIFQQCTGINAIMFYAPVLFKT- 262 (473)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 262 (473)
+..+..+..+...+..+.+ ....++-++-....+.+++++. +....+...+....+..+.+|+|.|++.
T Consensus 353 ~~~~~~~~~k~~~~~~~~~------~~~~~~ikdfp~s~~~ll~N~i----f~~~~l~~~~~~~~~~G~~tFlPKyLE~Q 422 (735)
T KOG3626|consen 353 KRARDLHVLKTESGGAKSD------KTFGKKIKDFPKSIKRLLSNPI----FMLVVLASVIESLAITGYITFLPKYLETQ 422 (735)
T ss_pred chhhhhcccccccccccCC------cchhhhHHHHHHHHHHHhcCch----HHHHHHHHHHHHHHHhhHHHhhHHHHHHH
Confidence 0000000000000000000 0000111222344555666665 8888888888899999999999999976
Q ss_pred cCCCCcchHHHHHHHHH-HHHHHHHHHHHHHhhcC--cchhHhHHhHHHHHHH
Q 012002 263 LGFGGSASLYSTVITGA-VNVLSTLVSIYSVDKVG--RRMLLLEAGIQMFLSQ 312 (473)
Q Consensus 263 ~g~~~~~~~~~~~~~~~-~~~~~~~~~g~l~d~~~--~~~~~~~~~~~~~~~~ 312 (473)
+|.++..+..+....++ +..+|.+++|++..|+. .|....+..+...+..
T Consensus 423 fg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkfkl~~r~~a~~~~~~~~l~l 475 (735)
T KOG3626|consen 423 FGISASLANILTGSIGVPAAAVGIFLGGLIIKKFKLSARGAAKFVIVCSVLSL 475 (735)
T ss_pred cCCCHHHHHHHhhhhhhhhhhhhhhccceeeeeecccHHHHHHHHHHHHHHHH
Confidence 99999998888766555 55677788999999875 3444444433333333
|
|
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=99.71 E-value=8.3e-19 Score=168.51 Aligned_cols=378 Identities=16% Similarity=0.121 Sum_probs=3.0
Q ss_pred hhccccCCCCCcccCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHh------------
Q 012002 13 YRRTQQGDDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVAA------------ 80 (473)
Q Consensus 13 ~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~l~~i~~~~~~~~------------ 80 (473)
|.+...+.+++.|+++.++.|++.+.+-++..+..++..++.+|..|-|.+-.|.++++++++++++-
T Consensus 21 ~~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~lPhf~~~~y~~~~~ 100 (539)
T PF03137_consen 21 YVNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFALPHFLSGPYSYEEA 100 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhccHhhcCCCccccc
Confidence 44556678999999999999999999999999999999999999888899999999999999987642
Q ss_pred h--------------------------------------hHHHHHHHHHHHhhhhhhhhhhhhHHHhhcCCCCCchhhHH
Q 012002 81 Q--------------------------------------NLAMLIVGRILLGCGVGFANQAVPLFLSEIAPTRIRGGLNI 122 (473)
Q Consensus 81 ~--------------------------------------~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~ 122 (473)
. -++.++++.++.|+|....++...+|+-|..++++-+...|
T Consensus 101 ~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~splYiG 180 (539)
T PF03137_consen 101 SNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKNSPLYIG 180 (539)
T ss_dssp ---------------------------------------------------SSS--------------------------
T ss_pred cccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccccccccCccchh
Confidence 0 13577889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhccccC-C----c-------------c-chHHHHHhhhHHHHHHHHHhhcccCChhhHHhhC
Q 012002 123 LFQLNVTIGILFANLVNYGTSHIK-S----Q-------------W-GWRISLGLAGIPAALLTVGSLLVTDTPNSLIERG 183 (473)
Q Consensus 123 ~~~~~~~lG~~~~~~~~~~~~~~~-~----~-------------~-~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~ 183 (473)
+..+...+|.++|-++++....+. + . . .|..-|++.+.+.++..+..+++|+..+...+..
T Consensus 181 i~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl~~FPk~lp~~~~~~ 260 (539)
T PF03137_consen 181 ILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAIPLFFFPKKLPGTSERQ 260 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCCccccc
Confidence 999999999999988866443321 0 0 1 2777777777777777766677775432221000
Q ss_pred ChHHHHHHHHHHhCCCCchHHHHHHHH---HHhhhhhcccchHHhhcccCchhHHHHHHHHHHhhcchhHHHHHhHHHHH
Q 012002 184 RFEEGKAVLRKIRGTDKIEPEFLELVE---ASRIAKEVKHPFRNLLKRRNRPQLVIAVALQIFQQCTGINAIMFYAPVLF 260 (473)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (473)
+.++. ..++.. +..+.+..+.+. ..+..++-....+.+++++. ++...+...........+.++.|.|+
T Consensus 261 ~~~~~--~~~~~~--~~~~~~~~~~~~~~~~~~~~~df~~~l~~Ll~Np~----f~~~~la~~~~~~~~~G~~tF~pKyl 332 (539)
T PF03137_consen 261 EEKES--SERKEE--DSDKDSFKDPKSKKSFGKSIKDFPKALKRLLTNPV----FMCLILAGVFESFIVSGFATFLPKYL 332 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred chhhh--hhcchh--hhhhhcccccccccchhhhhhhHHHHHHHHhcChH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00000 000000 000000000000 00111222334445555554 77777888888888889999999999
Q ss_pred HH-cCCCCcchHHHHHHHHH-HHHHHHHHHHHHHhhcC--cchhHhHHhHHHHHHHHHH--HHHHhhhhc-------cC-
Q 012002 261 KT-LGFGGSASLYSTVITGA-VNVLSTLVSIYSVDKVG--RRMLLLEAGIQMFLSQTVI--AIILGIKVK-------DH- 326 (473)
Q Consensus 261 ~~-~g~~~~~~~~~~~~~~~-~~~~~~~~~g~l~d~~~--~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-------~~- 326 (473)
|. ++.++.++..+.....+ +..+|.+++|++.+|++ .|+......+...+..+.. .++...... ..
T Consensus 333 E~QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~~~~v~~~v~~~~~~~~~~~~C~~~~~aGv~~~y~ 412 (539)
T PF03137_consen 333 ESQFGLSASQASLLTGIVSIPGAALGILLGGYIVKKFKLSARGAAKFCIVVSIVSVILYSPLFFLGCPNPPIAGVTVPYH 412 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHhCCCHHHHHHHHhhhhcchhheehheEEEEEEEecCcHHHHHHHHHHHHHHHHHHHHHHHeecCCCCceeeecCccc
Confidence 76 99999988887766555 67788899999999975 4455444444444333331 111111100 00
Q ss_pred --------Cc---------------------ccchhhHHHH-HHHHHHHHHhhhccccccccccccccccccchhhhHHH
Q 012002 327 --------SE---------------------DLHTGFAVLV-VIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSV 376 (473)
Q Consensus 327 --------~~---------------------~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 376 (473)
.+ +..-...... ++..++..........|..... -..+|+++|+.+.|+
T Consensus 413 ~~~~~~~~~~~~~~Cn~~~~~~~~~a~~G~C~~~C~~~~~~Fl~~~~~~~~~~~~~~~p~~~i~-LR~V~~~~rs~AlGv 491 (539)
T PF03137_consen 413 NSTSSSPSCNLTCSCNSCCSSGNGSATPGKCPSDCCNKLIPFLILLFILSFFTFMSQVPSTLIT-LRCVPPEQRSFALGV 491 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccCCCCCCCCCCCCCCccCCCcccccCCCcCcccccccHHHHHHHHHHHHHHHhcccchheee-eccCChhhcchhhhH
Confidence 00 0000111222 2222222333333444444433 478899999999999
Q ss_pred HHHHHH-HHHHHHHHHHHHHhhhh
Q 012002 377 TVCVNL-LFTFVIAQAFLSMLCHF 399 (473)
Q Consensus 377 ~~~~~~-~~~~~~~~~~~~~~~~~ 399 (473)
...+.. +|.+-+|.++|.+.|..
T Consensus 492 ~~~~~rllg~IPgPIifG~iiD~t 515 (539)
T PF03137_consen 492 QWLIIRLLGFIPGPIIFGAIIDST 515 (539)
T ss_dssp ------------------------
T ss_pred HHHHHHhhcCcchHHHHhHHHhhh
Confidence 998766 46677999999999864
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.7e-16 Score=154.08 Aligned_cols=173 Identities=12% Similarity=0.122 Sum_probs=132.7
Q ss_pred CCcccCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHH---HHHhhhHHHHHHHHHHHhhhhh
Q 012002 22 SNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAF---NVAAQNLAMLIVGRILLGCGVG 98 (473)
Q Consensus 22 ~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~l~~i~~~~---~~~~~~~~~l~~~r~l~G~~~~ 98 (473)
++++|.+..+.++..+...++..++.+++|+++||+|||+.+..+.++..++.+. ...+++...++++|++.|++.+
T Consensus 278 ~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 357 (490)
T PRK10642 278 SHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINSNVIGLIFAGLLMLAVILN 357 (490)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 4556888888888888899999999999999999999999988887654443332 2233457778889999999888
Q ss_pred hhhhhhhHHHhhcCCCCCchhhHHHHHHHHHHHHHHHHHHhhhccccCCc-cchHHHHHhhhHHHHHHHHHhhcccCChh
Q 012002 99 FANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTSHIKSQ-WGWRISLGLAGIPAALLTVGSLLVTDTPN 177 (473)
Q Consensus 99 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~-~~wr~~f~~~~~~~~~~~~~~~~~~e~p~ 177 (473)
........++.|.+|++.|++++++.+....++..++|.+ .+.+.+. .+|+.++++..+++++..+..+++||+|+
T Consensus 358 ~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i---~g~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~pes~~ 434 (490)
T PRK10642 358 CFTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTL---AAWLVESTQNLMMPAYYLMVVAVIGLITGVTMKETAN 434 (490)
T ss_pred HHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHH---HHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhccccC
Confidence 7777888889999999999999997444444555667766 3333332 34787777777777777777777899999
Q ss_pred hHHhh-----CChHHHHHHHHHHhC
Q 012002 178 SLIER-----GRFEEGKAVLRKIRG 197 (473)
Q Consensus 178 ~~~~~-----~~~~~~~~~~~~~~~ 197 (473)
++.++ ++.+|+++.++++++
T Consensus 435 ~~~~~~~~~~~~~~~a~~~l~~~~~ 459 (490)
T PRK10642 435 RPLKGATPAASDIQEAKEILVEHYD 459 (490)
T ss_pred CCCCCccccccchhhHHHHhhcccc
Confidence 98765 888999999988874
|
|
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.1e-15 Score=138.14 Aligned_cols=366 Identities=14% Similarity=0.133 Sum_probs=218.7
Q ss_pred cccCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhh-HHHHHHHHHHHHHHHHHH-HHh---h-hHHHHHHHHHHHhhhh
Q 012002 24 YCKYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGR-RLTMLIAGIFFIAGVAFN-VAA---Q-NLAMLIVGRILLGCGV 97 (473)
Q Consensus 24 ~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~Dr~Gr-r~~l~~~~~l~~i~~~~~-~~~---~-~~~~l~~~r~l~G~~~ 97 (473)
|.+.+.+..|++.++..++.+++++.+|++..|.+. |+.++.+.++..+++++. ++. + ..+.++++|++.|+|.
T Consensus 65 D~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~ 144 (488)
T KOG2325|consen 65 DPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLIAIIGNLLYLALAYVPNGVKYLMLVARILTGVGV 144 (488)
T ss_pred CCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccCHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHcCcCc
Confidence 567888999999999999999999999999999997 888999999999999998 433 3 6789999999999998
Q ss_pred hhhhhhhhHHHhhcCCCCCchhhHHHHHHHHHHHHHHHHHHhhhccccCCc-------cc---hHHHHHhhhHHHHHHHH
Q 012002 98 GFANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTSHIKSQ-------WG---WRISLGLAGIPAALLTV 167 (473)
Q Consensus 98 ~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~-------~~---wr~~f~~~~~~~~~~~~ 167 (473)
| ......+|+++-...++|.++++....+..+|.++||.++.++..+.+. .. +-.+-|+.+++.++.++
T Consensus 145 ~-n~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v 223 (488)
T KOG2325|consen 145 G-NFAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIV 223 (488)
T ss_pred c-cHHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHH
Confidence 7 6678899999988889999999999999999999999987776665531 11 22566777777777666
Q ss_pred H-hhcccCChhhHHhhCChHHHHHHHHHHhCCCCchHHHHHHHHHHhhhhhcccchHHhhcccCchhHHHHHHHHHHhhc
Q 012002 168 G-SLLVTDTPNSLIERGRFEEGKAVLRKIRGTDKIEPEFLELVEASRIAKEVKHPFRNLLKRRNRPQLVIAVALQIFQQC 246 (473)
Q Consensus 168 ~-~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (473)
+ .+++.|.++....++..++ ++ ++. ...+.-+.+..+...+.+.+..+...
T Consensus 224 ~i~~~f~E~~~~~~~~~~~~~------------------~~---~~~-------~~~~~~~~~~d~~~~~vc~~~~~~~~ 275 (488)
T KOG2325|consen 224 IILFFFKEVYRGIIDKKKRSV------------------EE---EKS-------DIEKVKKPKLDWVAVLVCIFLRFVVN 275 (488)
T ss_pred HHHhheeecccCccccccccc------------------hh---hcc-------chhhhccCChhHHHHHHHHHHHHHHH
Confidence 6 4457776532111110000 00 000 00001111222233444445555555
Q ss_pred chhHHHHHhH-HHHHHHcCCCCcchHHHH----HHHHHHHHHHHHHHHHHH-hhcCcchhHhHHhHHHHHHHHHHHHHHh
Q 012002 247 TGINAIMFYA-PVLFKTLGFGGSASLYST----VITGAVNVLSTLVSIYSV-DKVGRRMLLLEAGIQMFLSQTVIAIILG 320 (473)
Q Consensus 247 ~~~~~~~~~~-~~~~~~~g~~~~~~~~~~----~~~~~~~~~~~~~~g~l~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (473)
..+....... +.....++++..++-... ++.++......+...+.. .++.+|+.+..+.+.......+......
T Consensus 276 ~~~~~iet~~~~~~m~~y~w~~~~av~~~gi~~~~~g~ls~~~~l~~~f~~l~~i~~r~~~~~g~l~~f~~~~i~~yp~~ 355 (488)
T KOG2325|consen 276 FIATTIETLSSALTMVMYGWTGSEAVLYNGITLSISGILSVILLLLYIFTRLGKIDKRRIILLGFLIFFLSYYIFTYPWG 355 (488)
T ss_pred HHHHHHHhccchHHHHHhccccchHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhhccceeeeehHHHHHHhhheeeeecc
Confidence 5545434433 344455777766544333 223333333223333322 2334455555443333333322222111
Q ss_pred hhh-ccC-Cc-----ccc---------hhhHHHHHHH--HHHHHHhhhccccccccccccccccccchhhhHHHHHHHHH
Q 012002 321 IKV-KDH-SE-----DLH---------TGFAVLVVIM--ICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNL 382 (473)
Q Consensus 321 ~~~-~~~-~~-----~~~---------~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 382 (473)
... ..+ .+ ... .........+ ..+++..+-.... ...++-+|+..+..+++..++......
T Consensus 356 ~~s~pv~~~~~~~~~~~~~~y~wc~~~~~v~~~~~l~~~i~~~g~~~P~~~~-~~~tlySkiLgp~~q~~~qg~~~~~~s 434 (488)
T KOG2325|consen 356 FYSGPVQPYNTTYAGCDFEEYSWCDTTTAVPLILYLISFIVVFGIAFPFIST-ALDTLYSKILGPRDQGTMQGVFSISGS 434 (488)
T ss_pred ccccccccccccccCcCcccchhhccCcccChhhheeehhheeccccccccc-hHHHHHHHHhCCccccceeEEEEeccc
Confidence 111 000 00 000 0011111111 1122222221111 234455788899999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHH
Q 012002 383 LFTFVIAQAFLSMLCHFKFGIFLFFSGWVLIMSCFVF 419 (473)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (473)
.+..++|.+........|+...+.+..+..+.....+
T Consensus 435 ~~~~~~~~~~t~~~~~~g~~~v~~~~~~~~l~~~~l~ 471 (488)
T KOG2325|consen 435 IARVVGPIFSTAIFTLSGPRPVWIILLCLLLVVAALW 471 (488)
T ss_pred hhhhhhHHHHhhhHHhcCccHHHHHHHHHHHHHHHHH
Confidence 9999999988888888887766666555555444433
|
|
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=99.65 E-value=1e-15 Score=122.25 Aligned_cols=137 Identities=23% Similarity=0.354 Sum_probs=120.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhhhhhhHHHhhcCCC
Q 012002 35 FTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVAAQNLAMLIVGRILLGCGVGFANQAVPLFLSEIAPT 114 (473)
Q Consensus 35 ~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~l~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~ 114 (473)
+.+.+.++..++.++.|++.||+|||+.+..+..+..++.+...+.++++.+.+.+++.|++.+...+....++.|.+|+
T Consensus 3 ~~~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 82 (141)
T TIGR00880 3 LLAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIYPP 82 (141)
T ss_pred EEEeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCCh
Confidence 34566788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHhhhccccCCccchHHHHHhhhHHHHHHHHHhhc-ccC
Q 012002 115 RIRGGLNILFQLNVTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVGSLL-VTD 174 (473)
Q Consensus 115 ~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~-~~e 174 (473)
++|++.+++.+....+|..+++.+ .+.+.+..+|++.+++.++..++..+..++ .||
T Consensus 83 ~~~~~~~~~~~~~~~~g~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (141)
T TIGR00880 83 EERGVALGLMSAGIALGPLLGPPL---GGVLAQFLGWRAPFLFLAILALAAFILLAFLLPE 140 (141)
T ss_pred hhhhHHHHHHHHhHHHHHHHhHHh---HHHHhcccchHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 999999999999999999999999 444556678999999988877776665443 444
|
|
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.5e-14 Score=133.23 Aligned_cols=318 Identities=13% Similarity=0.103 Sum_probs=205.0
Q ss_pred HHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhh--hhhhhhhhhHHHhhcCCCCC
Q 012002 39 LYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVAAQNLAMLIVGRILLGCG--VGFANQAVPLFLSEIAPTRI 116 (473)
Q Consensus 39 ~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~l~~i~~~~~~~~~~~~~l~~~r~l~G~~--~~~~~~~~~~~i~~~~~~~~ 116 (473)
..+...+.++..|.++||+|||..+....+...+..+...+.. +|.++ +.|+. .+.......++++|....++
T Consensus 71 ~~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~~-~~~~~----~~~l~g~~~~~~s~~~a~vadis~~~~ 145 (463)
T KOG2816|consen 71 AGLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQG-YWFFL----LLGLSGGFSAIFSVGFAYVADISSEEE 145 (463)
T ss_pred hHHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHHH-HHHhh----hcccccchhhhhhhhhhheeeccchhH
Confidence 3567788899999999999999999999999888888777766 44333 44442 34467788889999999999
Q ss_pred chhhHHHHHHHHHHHHHHHHHHhhhccccCCccchHHHHHhhhHHHHHHHHH-hhcccCChhhHHhhCChHHHHHHHHHH
Q 012002 117 RGGLNILFQLNVTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVG-SLLVTDTPNSLIERGRFEEGKAVLRKI 195 (473)
Q Consensus 117 r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~-~~~~~e~p~~~~~~~~~~~~~~~~~~~ 195 (473)
|....++....+..+..++|.++. .+....|.-.+|.+..+..++..+. ..++||+-....+. + ...+..
T Consensus 146 R~~~~gll~~~~~~~~~~~p~~~~---~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~~~---~---~~~~~~ 216 (463)
T KOG2816|consen 146 RSSSIGLLSGTFGAGLVIGPALGG---YLVKFLGIALVFLIAAASGILSLLYMLLFLPESLQEKERS---D---ATLREL 216 (463)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHH---HHHHhcCchHHHHHHHHHHHHHHHHHhhccccccCccccc---c---cccccc
Confidence 999999999999999999999944 4444466778888888887777766 55688864211111 0 000000
Q ss_pred hCCCCchHHHHHHHHHHhhhhhcccchHHhhcccCchhHHHHHHHHHHhhcchhHHHHHhHHHHHH-HcCCCCcchHHHH
Q 012002 196 RGTDKIEPEFLELVEASRIAKEVKHPFRNLLKRRNRPQLVIAVALQIFQQCTGINAIMFYAPVLFK-TLGFGGSASLYST 274 (473)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~ 274 (473)
.... .........++...+....|..+.......+..........-..+++++ .++++..+.+.+.
T Consensus 217 ~~~~-------------~~~~~~~~~~~~~~~~~~~r~~l~l~l~~~~~~~~~~~~~~~~~~~yl~~~f~w~~~~~s~~~ 283 (463)
T KOG2816|consen 217 TPGS-------------LDSSHVADAFQSLTKVGPDRLLLLLLLVAFLSSLPEAGGASDVLLLYLKAKFGWNKKEFSDLL 283 (463)
T ss_pred CCCc-------------ccchhhhhhhhhhcccCCCccchHHHHHHHHHHHHHhcCceeEEEEEEeeecCcCHHHHHHHH
Confidence 0000 0000111122222222222222222222222111111111101123343 4899999999888
Q ss_pred HHHHHHHHHHHHHHH-HHHhhcCcchhHhHHhHHHHHHHHHHHHHHhhhhccCCcccchhhHHHHHHHHHHHHHhhhccc
Q 012002 275 VITGAVNVLSTLVSI-YSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSW 353 (473)
Q Consensus 275 ~~~~~~~~~~~~~~g-~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (473)
+..+....++.++.. .+...++.|+....+.....+.....++.. . .|....... ...+....
T Consensus 284 ~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~~------------~--~w~~~~~~v--~~~~~~~~ 347 (463)
T KOG2816|consen 284 SLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFAT------------E--TWMMFAAGV--VVALAGIV 347 (463)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHhc------------c--chhhhHHHH--HHHhhcch
Confidence 899998889888766 777788988888777777777777777642 1 122111111 12222333
Q ss_pred cccccccccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 012002 354 GPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHF 399 (473)
Q Consensus 354 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (473)
.|...+..+...+++.+|++.++...+..+.+.++|.+.+.+...+
T Consensus 348 ~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i~~~t 393 (463)
T KOG2816|consen 348 FPAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYGNIFALT 393 (463)
T ss_pred hHHHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 3555667778889999999999999999999999999999886543
|
|
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.6e-12 Score=116.78 Aligned_cols=340 Identities=10% Similarity=0.058 Sum_probs=209.4
Q ss_pred ccCCCchhH-HHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhhhh
Q 012002 25 CKYDNQGLQ-LFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVAAQNLAMLIVGRILLGCGVGFANQA 103 (473)
Q Consensus 25 ~~~s~~~~~-~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~l~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~ 103 (473)
.|++..|+. -+.-...-.+....++...+.|..|.|++++++.+...+...+..+.++.+.+-+..++-|++.+ ...+
T Consensus 35 kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~~sv~~mq~~q~~yg~~~a-~eva 113 (412)
T PF01770_consen 35 KNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFGTSVLAMQLMQFFYGLATA-AEVA 113 (412)
T ss_pred cCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHH-HHHH
Confidence 688888865 56667777788899999999999999999999999999999999999999999999999999988 4678
Q ss_pred hhHHHhhcCCCCCchhhHHHHHHHHHHHHHHHHHHhhhccccCCccchHHHHHhhhHHHHHHHHHhhcccCChhhHHhhC
Q 012002 104 VPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVGSLLVTDTPNSLIERG 183 (473)
Q Consensus 104 ~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~ 183 (473)
-.+++-...|+++-.++.+...++.-+|..++.++|=.+... +..+.+...++......+..++.+++|..++....++
T Consensus 114 y~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~-~~~sy~~L~~isl~~~~~a~~~~~fLP~~~~S~~f~r 192 (412)
T PF01770_consen 114 YYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSF-GGVSYFQLNYISLASVSLALLIALFLPMPKRSLFFHR 192 (412)
T ss_pred HHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHHHHHcCCCCcccceec
Confidence 888998889999888999888888888877777774322221 2345777777776666666666778888776544433
Q ss_pred ChHHHHHHHHHHhCCCCchHHHH-HHHHH--------HhhhhhcccchHHhhcccCchhHHHHHHHHHHhhcchhHHHHH
Q 012002 184 RFEEGKAVLRKIRGTDKIEPEFL-ELVEA--------SRIAKEVKHPFRNLLKRRNRPQLVIAVALQIFQQCTGINAIMF 254 (473)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (473)
+.++.....+...+..+..++.. +..+. ...-+.....+++..+++. ++...+.+.+...++....+
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~y~~~~----ll~WSlWWa~atcgy~qv~n 268 (412)
T PF01770_consen 193 KPPAEQDANESESDKMNESPESSSSTEKSPSTESSSRKSVLRLLWKDFKSCYSNPR----LLLWSLWWAFATCGYYQVIN 268 (412)
T ss_pred cCccccccccccccccccccccccccccCcccccchHHHHHHHHHHHHHHHhcCch----HHHHHHHHHHHHhHHHHHHH
Confidence 32221110000000000000000 00000 0000111122233333333 66677777777888888888
Q ss_pred hHHHHHHHc---CCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHhHHhHHHHHHHHHHHHHHhhhhccCCcccc
Q 012002 255 YAPVLFKTL---GFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKDHSEDLH 331 (473)
Q Consensus 255 ~~~~~~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (473)
|...+.++. +-...-.|.+-+...+.+.++.+..|++..++.+...+..+......+.+++... .
T Consensus 269 YvQ~LW~~v~~~~~~~vYNG~VeA~~tllgA~~al~~g~v~~~w~~~~~l~l~~~S~l~a~~L~lm~------------~ 336 (412)
T PF01770_consen 269 YVQSLWDTVPPSDNESVYNGAVEAASTLLGAIAALLAGYVKVNWDRWGELALGVFSLLQAGLLFLMS------------F 336 (412)
T ss_pred HHHHHHHhcCCCCCCcccchHHHHHHHHHHHHHHHHHhHhhcchHHHHHHHHHHHHHHHHHHHHHHH------------H
Confidence 888888776 3334456777777788888888889998666666554444433322222222221 2
Q ss_pred hhhHHHHHHHHHHHHHhhhccccccccccccccccccchhhhHHHHHHHHHH
Q 012002 332 TGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLL 383 (473)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 383 (473)
..+.|.......++...+.....-...-+ +.....+.-+...|+...+..+
T Consensus 337 t~~Iwv~Y~~yIif~~~y~fliTiA~~qI-A~~l~~e~yaLVFGiNtf~Al~ 387 (412)
T PF01770_consen 337 TGNIWVCYAGYIIFRSLYMFLITIASFQI-AKNLSEERYALVFGINTFVALV 387 (412)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhccccceeeeeeeHHHHHHH
Confidence 23444444444444444443322222222 2333444456666665555444
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=99.53 E-value=3.3e-13 Score=127.75 Aligned_cols=380 Identities=13% Similarity=0.110 Sum_probs=216.0
Q ss_pred CCCCCcccCCCchhHHHHHHHHHHHHHHHHHHHHhhhhh-----hhHHHHHHHHHHHHHHHHHHHHh----hhHHHHHHH
Q 012002 19 GDDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRRL-----GRRLTMLIAGIFFIAGVAFNVAA----QNLAMLIVG 89 (473)
Q Consensus 19 ~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~Dr~-----Grr~~l~~~~~l~~i~~~~~~~~----~~~~~l~~~ 89 (473)
+-+++++|+++++.....+...+...+ -++.|.++|.+ .||+-++++.++.+++.+..+.. .+.....++
T Consensus 14 ~~l~~~l~ls~~~~~~~~~~~~lPw~~-Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~~~~~~ 92 (433)
T PF03092_consen 14 PFLKDDLGLSPAQLQRLSSLASLPWSI-KPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAAIAVVL 92 (433)
T ss_pred HHHHHHcCCCHHHHHHHHHHHhCchHH-hhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhhhHHHH
Confidence 456678899999999999988888665 47789999975 36666777877776666665553 346666777
Q ss_pred HHHHhhhhhhhhhhhhHHHhhcCC--CCCchhhHHHHHHHHHHHHHHHHHHhhhccccCCccchHHHHHhhhHHHHHHHH
Q 012002 90 RILLGCGVGFANQAVPLFLSEIAP--TRIRGGLNILFQLNVTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTV 167 (473)
Q Consensus 90 r~l~G~~~~~~~~~~~~~i~~~~~--~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~ 167 (473)
-++..+|.+....++-+++.|... +++|+...+.......+|.+++..+ .+.+.+..++|..|.+.+++..+..+
T Consensus 93 l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l---~G~l~~~~~~~~~f~i~~~~~~l~~~ 169 (433)
T PF03092_consen 93 LFLASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLL---SGPLLDSFGPQGVFLISAALPLLMLI 169 (433)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHh---hhhhhhcCCCeEEehHHHHHHHHHHH
Confidence 788899999999999999999873 3347788888888889999999888 55566677899999888877776665
Q ss_pred HhhcccCChhhHHhhCChHHHHHHHHHHhCCCCchHHHHHHHHHHhhhhhcccchHHhhcccCchhHHH-HHHHHHHhhc
Q 012002 168 GSLLVTDTPNSLIERGRFEEGKAVLRKIRGTDKIEPEFLELVEASRIAKEVKHPFRNLLKRRNRPQLVI-AVALQIFQQC 246 (473)
Q Consensus 168 ~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 246 (473)
..+++.|..+. .+.++.... .++..+. .....++.....++.++.+..++..+ ..++..+...
T Consensus 170 ~~~~~~~e~~~----~~~~~~~~~-----~~~~~~~-------~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~ 233 (433)
T PF03092_consen 170 VALFLLEERKV----RPADEVFSF-----GKEEVPC-------LFGSFREQLSELWRALQQRAIWQPILFFIFFFNLPPS 233 (433)
T ss_pred HHHHhhhhccc----cccchhhcc-----cccccch-------hhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccC
Confidence 54444432100 000000000 0000000 00001111222333333333221111 1111111111
Q ss_pred chhHH-HHHhHHHHHHHcC---CCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHhHHhHHHHHHHHHHHHHHhhh
Q 012002 247 TGINA-IMFYAPVLFKTLG---FGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIK 322 (473)
Q Consensus 247 ~~~~~-~~~~~~~~~~~~g---~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (473)
.. .. ..++. ....+ +++...+.+..+..++.++|..+......+..-|+++....+...+..+.-..+....
T Consensus 234 ~~-~a~~fy~~---~~~~~gp~fs~~f~~~~~~vg~~~~l~g~~~y~~~~~~~~~R~~~~~t~~~~~~~~l~~~~lv~~~ 309 (433)
T PF03092_consen 234 IS-SASSFYFQ---TDALGGPHFSPSFYGTLSIVGSIASLLGILLYRKYFSNWSWRRIFVVTTLVSVLASLFDLLLVTRW 309 (433)
T ss_pred CC-CccEEEEE---eccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcccEEEEEEE
Confidence 11 11 11111 12234 7777777777777778888888777766666666666554443332222111110000
Q ss_pred hccCCcccchhhHHHHHHHHHHHHHhhhccccccccccccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhh--
Q 012002 323 VKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHFK-- 400 (473)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 400 (473)
+..-..++. +..+.-..+........+.|. ..+++|++|+...|+.+++...+.++|..++..+...+.+..+
T Consensus 310 --n~~~Gi~d~--~f~lgd~~l~~~~~~i~~mP~-lvl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~vt 384 (433)
T PF03092_consen 310 --NLDLGIPDQ--WFALGDTILEEVIGMIAFMPS-LVLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLMELFGVT 384 (433)
T ss_pred --eeeeCcCCe--EEEEEhHHHHHHHHHHHHHHH-HHHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 000000111 111111122222222222233 2345799999999999999999999999999998888776554
Q ss_pred ------hhHHHHHHHHHHHHHHHHHhhccCCCC
Q 012002 401 ------FGIFLFFSGWVLIMSCFVFFLLPETKN 427 (473)
Q Consensus 401 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (473)
.....+++.++.++.+.+..++|+.++
T Consensus 385 ~~~f~~l~~lili~~~~~ll~l~ll~lLp~~~~ 417 (433)
T PF03092_consen 385 RDDFSNLWLLILICSVIQLLPLPLLFLLPPQKR 417 (433)
T ss_pred cccccchHHHHHHHHHHHHHHHHHHHHcCCCch
Confidence 223333444444555555556665443
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.52 E-value=9.4e-14 Score=132.60 Aligned_cols=148 Identities=16% Similarity=0.232 Sum_probs=127.2
Q ss_pred cCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhhhhhh
Q 012002 26 KYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVAAQNLAMLIVGRILLGCGVGFANQAVP 105 (473)
Q Consensus 26 ~~s~~~~~~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~l~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~ 105 (473)
+.+..+.|++.++..++..++.+++|++.||+|||+.+..+.++.+++.++.+++++.+.+++.+++.|++.+...+...
T Consensus 258 ~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~ 337 (420)
T PRK09528 258 EQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFLLVGVF 337 (420)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677889999999999999999999999999999999999999999999999999999999999999999988888888
Q ss_pred HHHhhcCCCCCchhhHHH-HHHHHHHHHHHHHHHhhhccccCCccchHHHHHhhhHHHHHHHHHhh-cccCCh
Q 012002 106 LFLSEIAPTRIRGGLNIL-FQLNVTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVGSL-LVTDTP 176 (473)
Q Consensus 106 ~~i~~~~~~~~r~~~~~~-~~~~~~lG~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~-~~~e~p 176 (473)
.++.|.+|++.|+...+. ++....+|.++++.+ .+.+.+..|||..|.+.+++.++..++.+ .++++|
T Consensus 338 ~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~---~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~~~~~~~ 407 (420)
T PRK09528 338 KYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTL---AGNLYDSIGFQGTYLILGGIVLLFTLISVFTLSGDR 407 (420)
T ss_pred HHHHHHcCccceeeeeeehHHHHHHHHHHHHHHH---HHHHHHhhCchHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 999999999988887655 677788999999999 66666678999999998888776665543 444443
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.8e-13 Score=128.59 Aligned_cols=177 Identities=15% Similarity=0.087 Sum_probs=127.0
Q ss_pred HHHHHHHHHhhcchhHHHHHhHHHHHHHcCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHhHHhHHHHHHHHH
Q 012002 235 VIAVALQIFQQCTGINAIMFYAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTV 314 (473)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~ 314 (473)
+....+..+...........+.|.+.+++|.+..+.+...+...++.+++.++.|+++||+|||+.+..+..+..++.++
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~ 98 (398)
T TIGR00895 19 IILSFLIMLMDGYDLAAMGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLFSVFTLL 98 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 44444444444445556667788888889999999999999999999999999999999999999999887777766655
Q ss_pred HHHHHhhhhccCCcccchhhHHHHHHHHHHHHHhhhccccccccccccccccccchhhhHHHHHHHHHHHHHHHHHHHHH
Q 012002 315 IAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLS 394 (473)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (473)
.... + ..+.... ..+..+.......+....+..|.+|++.|+++.++.+....+|..+++.+.+.
T Consensus 99 ~~~~------------~--~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~ 163 (398)
T TIGR00895 99 CALA------------T--NVTQLLI-LRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGW 163 (398)
T ss_pred HHHc------------c--chHHHHH-HHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHH
Confidence 5432 1 1122222 22233333333445667788899999999999999999999999999999999
Q ss_pred HhhhhhhhHHHHHH-HHHHHHHHHHHhhccCCC
Q 012002 395 MLCHFKFGIFLFFS-GWVLIMSCFVFFLLPETK 426 (473)
Q Consensus 395 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 426 (473)
+.+..++...+.+. .+..+...+...+.+++.
T Consensus 164 l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (398)
T TIGR00895 164 LIPVFGWRSLFYVGGIAPLLLLLLLMRFLPESI 196 (398)
T ss_pred HhhcccceeehhhhhhHHHHHHHHHHHhCCCCC
Confidence 98887766555544 344444455555666543
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.2e-13 Score=129.30 Aligned_cols=149 Identities=17% Similarity=0.265 Sum_probs=124.3
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhh----hHHHHHHHHHHHhhhhhhhhh
Q 012002 27 YDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVAAQ----NLAMLIVGRILLGCGVGFANQ 102 (473)
Q Consensus 27 ~s~~~~~~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~l~~i~~~~~~~~~----~~~~l~~~r~l~G~~~~~~~~ 102 (473)
++.++.+...++..++..++.++.|+++||+|||+++.++.++.+++..+..... +++.+++.+++.|++.+...+
T Consensus 248 ~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~~~~~~~l~l~~~l~g~~~~~~~~ 327 (418)
T TIGR00889 248 FVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPEYFGYALLFLSMIVYGCAFDFFNI 327 (418)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHH
Confidence 3457789999999999999999999999999999999999999988877776632 346677889999999998899
Q ss_pred hhhHHHhhcCCCCCchhhHHHHH-HHHHHHHHHHHHHhhhccccCCc---cchHHHHHhhhHHHHHHHHHh-hcccCC
Q 012002 103 AVPLFLSEIAPTRIRGGLNILFQ-LNVTIGILFANLVNYGTSHIKSQ---WGWRISLGLAGIPAALLTVGS-LLVTDT 175 (473)
Q Consensus 103 ~~~~~i~~~~~~~~r~~~~~~~~-~~~~lG~~~~~~~~~~~~~~~~~---~~wr~~f~~~~~~~~~~~~~~-~~~~e~ 175 (473)
....++.|++|+++|++++++.+ ...++|.++||++++......+. +||+..|.+.+++.++..++. ++++|+
T Consensus 328 ~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~ 405 (418)
T TIGR00889 328 SGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFKYS 405 (418)
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 99999999999999999999997 67889999999996554433222 579999999888877776664 456665
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.6e-12 Score=114.85 Aligned_cols=234 Identities=12% Similarity=0.123 Sum_probs=150.6
Q ss_pred CcccCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhhh
Q 012002 23 NYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVAAQNLAMLIVGRILLGCGVGFANQ 102 (473)
Q Consensus 23 ~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~l~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~ 102 (473)
+++|++..|++.+....+....+..++.|.++||+|||+.-++.+++.+++++ +-..++++.++++|++.|++....+.
T Consensus 62 ~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl-~k~~~~~~~L~~GRvlgGiaTSLLfS 140 (354)
T PF05631_consen 62 ESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCL-TKHSSNYPVLLLGRVLGGIATSLLFS 140 (354)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHH-HHhccccHHHHHHHHHHHHHHHHHHH
Confidence 45799999999999999999999999999999999999999999999999986 44568999999999999999999998
Q ss_pred hhhHHH-hhcCC----CCCchhhHHHHH-HHHHHHHHHHHHHhhhccccCCcc--chHHHHHhhhHHHHHHHHHhh-ccc
Q 012002 103 AVPLFL-SEIAP----TRIRGGLNILFQ-LNVTIGILFANLVNYGTSHIKSQW--GWRISLGLAGIPAALLTVGSL-LVT 173 (473)
Q Consensus 103 ~~~~~i-~~~~~----~~~r~~~~~~~~-~~~~lG~~~~~~~~~~~~~~~~~~--~wr~~f~~~~~~~~~~~~~~~-~~~ 173 (473)
+--+++ .|.-. ++..+..++... ..+++-.+++.+++ ..+.+.. |-..+|....+..++..++.. ..+
T Consensus 141 ~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a---~~l~~~~~~g~vaPF~~a~~~l~~~~~~I~~~W~ 217 (354)
T PF05631_consen 141 AFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVA---NVLADWFGFGPVAPFDAAIVLLAVAAVLILKTWP 217 (354)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHH---HHHHHHhCCCCcchHHHHHHHHHHHHHHHHhccc
Confidence 888874 45422 222222222222 12222233333332 2222223 336788887777766666543 456
Q ss_pred CChhhHHhhCChHHHHHHHHHHhCCCCchHHHHHHHHHHhhhhhcccchHHhhcccCchhHHHHHHHHHHhhcchhHHHH
Q 012002 174 DTPNSLIERGRFEEGKAVLRKIRGTDKIEPEFLELVEASRIAKEVKHPFRNLLKRRNRPQLVIAVALQIFQQCTGINAIM 253 (473)
Q Consensus 174 e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (473)
|++... .+ .. +..++.+..++.++++++ ++.+.....+.....+....
T Consensus 218 ENyg~~------~~--------------~~---------~~~~~~~~a~~~i~~d~r---il~LG~~qslFE~smy~FVf 265 (354)
T PF05631_consen 218 ENYGDT------SS--------------SS---------SLSGSFREAWRAILSDPR---ILLLGLIQSLFEGSMYLFVF 265 (354)
T ss_pred ccCCCc------cc--------------cc---------chHHHHHHHHHHHHcCch---hHHHHHHHHHHHHHHHHhee
Confidence 643100 00 00 000111122344444444 34444445555555555566
Q ss_pred HhHHHHHHHcCCCCcchHHHHHHHHHHHHHHHHHHHHHHhh
Q 012002 254 FYAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDK 294 (473)
Q Consensus 254 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~ 294 (473)
.|.|.+..+ + .....|++++...+..++|+.+..++..+
T Consensus 266 lWtPaL~~~-~-~~~P~GlIFssFM~a~MlGS~lf~~l~s~ 304 (354)
T PF05631_consen 266 LWTPALDPD-D-EELPLGLIFSSFMVAMMLGSSLFSRLLSK 304 (354)
T ss_pred eeeceecCC-C-CCCCchHHHHHHHHHHHHHHHHHHHHHhC
Confidence 678877521 1 23457889999999999999988765554
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=3.8e-13 Score=127.09 Aligned_cols=150 Identities=17% Similarity=0.210 Sum_probs=125.1
Q ss_pred CCCcccCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhh
Q 012002 21 DSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVAAQNLAMLIVGRILLGCGVGFA 100 (473)
Q Consensus 21 ~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~l~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~ 100 (473)
+++++|+++.+.+++.+...++..++.+++|+++||+|||+.+..+.....+........++.+.+++.+++.+++.|..
T Consensus 243 l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~g~~ 322 (393)
T PRK15011 243 IINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMAHSPAILLGLQLLNAIYIGIL 322 (393)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 44567899999999998888888899999999999999999888877766666555566778888888999999988887
Q ss_pred hhhhhHHHhhcCCCCCchhhHHHHHHHHHHHHHHHHHHhhhccccCCccchHHHHHhhhHHHHHHHHHhhcccC
Q 012002 101 NQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVGSLLVTD 174 (473)
Q Consensus 101 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e 174 (473)
.+....+..|.+|+ +|++++++++....+|..+++.+ .+.+.+.+||+..|++.+++.++..+..+++||
T Consensus 323 ~~~~~~~~~~~~p~-~~g~~~~~~~~~~~lg~~~g~~l---~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 392 (393)
T PRK15011 323 GGIGMLYFQDLMPG-QAGSATTLYTNTSRVGWIIAGSL---AGIVAEIWNYHAVFWFALVMIIATLFCLLRIKD 392 (393)
T ss_pred HHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHHHHHHH---HHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhcC
Confidence 77888888998875 59999999999999999999999 445556679999999988888887777666654
|
|
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=4e-12 Score=120.01 Aligned_cols=175 Identities=11% Similarity=0.067 Sum_probs=122.4
Q ss_pred HHHHHHHHHhhcchhHHHHHhHHHHH-HHcCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHhHHhHHHHHHHH
Q 012002 235 VIAVALQIFQQCTGINAIMFYAPVLF-KTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQT 313 (473)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~ 313 (473)
++.+.+..++...+......+.|.++ +++|++..+.++..+...+..+++.+..|+++||+|||+.+..+.....++.+
T Consensus 9 ~~~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~ 88 (395)
T PRK10054 9 TSALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFI 88 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHH
Confidence 55555666666777777777777666 45899999999999999999999999999999999999998888777666665
Q ss_pred HHHHHHhhhhccCCcccchhhHHHHHHHHHHHHHhhhccccccccccccccccccchhhhHHHHHHHHHHHHHHHHHHHH
Q 012002 314 VIAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFL 393 (473)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (473)
.+.+. ++ .+..+...+..... .....+....+..|..|++.|+++.|+.+...++|..++|.+.+
T Consensus 89 ~~~~~------------~~--~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~ 153 (395)
T PRK10054 89 AIPLV------------NN--VTLVVLFFALINCA-YSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGT 153 (395)
T ss_pred HHHHH------------hH--HHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55442 11 12222222222222 22233455667789999999999999999999999999999999
Q ss_pred HHhhhhhhhHHHHHHHHHHHHHH-HHHhhccCC
Q 012002 394 SMLCHFKFGIFLFFSGWVLIMSC-FVFFLLPET 425 (473)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 425 (473)
.+.+ .++...+...+++.++.+ +..+.+++.
T Consensus 154 ~l~~-~g~~~~f~~~~~~~~i~~i~~~~~~~~~ 185 (395)
T PRK10054 154 LLVM-QSINLPFWLAAICSAFPLVFIQIWVQRS 185 (395)
T ss_pred HHHH-hccCcHHHHHHHHHHHHHHHHHHHHhcc
Confidence 8875 455555544444444443 333444443
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.45 E-value=4.2e-12 Score=126.36 Aligned_cols=162 Identities=14% Similarity=0.054 Sum_probs=118.3
Q ss_pred HHHHHhHHHHHHHcCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHhHHhHHHHHHHHHHHHHHhhhhccCCcc
Q 012002 250 NAIMFYAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKDHSED 329 (473)
Q Consensus 250 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (473)
..+....|.+.+++|++..+.+++.+...++.+++.+++|+++||+|||+.+.++.++..++.++..+.
T Consensus 184 ~~is~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~lil~~i~~ll~afa----------- 252 (742)
T TIGR01299 184 FVVGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVNGFFAFFSSFV----------- 252 (742)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHH-----------
Confidence 445666777778899999999999999999999999999999999999999998877777766655543
Q ss_pred cchhhHHHHHHHHHHHHHhhhccccccccccccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhh----------
Q 012002 330 LHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHF---------- 399 (473)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 399 (473)
+ ..+.+++. -++.+....+..+...+++.|.+|++.|+...++.+....+|..+++.+...+....
T Consensus 253 -~--s~~~llv~-R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il~~~G~~~~~g~~~ 328 (742)
T TIGR01299 253 -Q--GYGFFLFC-RLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQMGSAY 328 (742)
T ss_pred -h--hHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhcccccc
Confidence 1 11222222 222222333334677888899999999999999999999999988888766655432
Q ss_pred ---hhhHHHHHHHHHHHHHHHHHhhccCCC
Q 012002 400 ---KFGIFLFFSGWVLIMSCFVFFLLPETK 426 (473)
Q Consensus 400 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (473)
+|...+.+.++..+++++..+++||+.
T Consensus 329 ~~~gWR~l~~i~~lp~ll~ll~~~~lPESP 358 (742)
T TIGR01299 329 QFHSWRVFVIVCAFPCVFAIGALTFMPESP 358 (742)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence 344555566666666666677788763
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.45 E-value=8.8e-13 Score=122.89 Aligned_cols=146 Identities=27% Similarity=0.356 Sum_probs=134.2
Q ss_pred cccCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhHH-HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhhh
Q 012002 24 YCKYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRL-TMLIAGIFFIAGVAFNVAAQNLAMLIVGRILLGCGVGFANQ 102 (473)
Q Consensus 24 ~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~Dr~Grr~-~l~~~~~l~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~ 102 (473)
.+|.++.+.+++.+...++..++.++.|++.||+|||+ .+..+..+..++.++....++.+.+.+..++.|++.+...+
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 284 (352)
T cd06174 205 VLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFP 284 (352)
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhccch
Confidence 34889999999999999999999999999999999999 99999999999999999999999999999999999999999
Q ss_pred hhhHHHhhcCCCCCchhhHHHHHHHHHHHHHHHHHHhhhccccCCccchHHHHHhhhHHHHHHHHHhhcc
Q 012002 103 AVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVGSLLV 172 (473)
Q Consensus 103 ~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~ 172 (473)
....++.|..|+++|++.+++.+....+|..+++.+ .+.+.+..+|+..+++.+++.++..+..+++
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i---~g~l~~~~~~~~~~~~~~~~~~i~~i~~~~~ 351 (352)
T cd06174 285 ALLTLASELAPPEARGTASGLFNTFGSLGGALGPLL---AGLLLDTGGYGGVFLILAALALLAALLLLLL 351 (352)
T ss_pred hHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhcccCcchHHHHHHHHHHHHHHHheec
Confidence 999999999999999999999999999999999999 5555567899999999999888877765443
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.45 E-value=6.4e-12 Score=119.64 Aligned_cols=180 Identities=12% Similarity=0.037 Sum_probs=129.4
Q ss_pred chhHHHHHHHHHHhhcchhHHHHHhHHHHHHHcCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHhHHhHHHHH
Q 012002 231 RPQLVIAVALQIFQQCTGINAIMFYAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFL 310 (473)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~ 310 (473)
.++.+....+..+.............|.+.+++|.+..+.++..+...++..++.++.|+++||+|||+.+..+.++..+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~ 89 (405)
T TIGR00891 10 QWNAFSAAWLGWLLDAFDFFLVALVLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLFSA 89 (405)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 34445566666666666677777778888888999999999999999999999999999999999999999988777777
Q ss_pred HHHHHHHHHhhhhccCCcccchhhHHHHHHHHHHHHHhhhccccccccccccccccccchhhhHHHHHHHHHHHHHHHHH
Q 012002 311 SQTVIAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQ 390 (473)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 390 (473)
+.++.... + ..+..... .+..+.......+....++.|.+|+++|+++.++.+....+|..+++.
T Consensus 90 ~~~~~~~~------------~--~~~~l~~~-~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 154 (405)
T TIGR00891 90 GTLACGFA------------P--GYITMFIA-RLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQ 154 (405)
T ss_pred HHHHHHHh------------c--cHHHHHHH-HHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHH
Confidence 66655442 1 11222222 222222222333455667789999999999999999999999999999
Q ss_pred HHHHHhhhhh--hhHHHHHHHHHHHHHHHHHhhccCC
Q 012002 391 AFLSMLCHFK--FGIFLFFSGWVLIMSCFVFFLLPET 425 (473)
Q Consensus 391 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (473)
+.+.+.+..+ +...+.+.++..+...+.....||+
T Consensus 155 l~~~l~~~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~ 191 (405)
T TIGR00891 155 VYSLVVPVWGDGWRALFFISILPIIFALWLRKNIPEA 191 (405)
T ss_pred HHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 9988877655 5555555554444444444455554
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.2e-12 Score=124.38 Aligned_cols=143 Identities=17% Similarity=0.174 Sum_probs=123.6
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhhhhhhHHHh
Q 012002 30 QGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVAAQNLAMLIVGRILLGCGVGFANQAVPLFLS 109 (473)
Q Consensus 30 ~~~~~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~l~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~ 109 (473)
.+.++..+.+.++..++.++.|++.||+|||+.+..+..+.+++.++..+.++.+.+++.+++.|++.+..++.....+.
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~ 328 (399)
T PRK05122 249 DGAALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLAPSPWMALIGAALTGFGFSLVFPALGVEAV 328 (399)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 34567778888999999999999999999999999999998988888888888888889999999999999988888888
Q ss_pred hcCCCCCchhhHHHHHHHHHHHHHHHHHHhhhccccCCccchHHHHHhhhHHHHHHHHHhhcccCC
Q 012002 110 EIAPTRIRGGLNILFQLNVTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVGSLLVTDT 175 (473)
Q Consensus 110 ~~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~ 175 (473)
|.+|+++|+++.++++....+|..+++.+ .+.+.+..||++.|++.++..++..+..++++++
T Consensus 329 ~~~~~~~~g~~~g~~~~~~~~g~~~~~~~---~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (399)
T PRK05122 329 KRVPPQNRGAALGAYSVFLDLSLGITGPL---AGLVASWFGYPSIFLAAALAALLGLALTWLLYRR 391 (399)
T ss_pred HhCCHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 99999999999999999999999998888 5555566789999999888887777665555443
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.1e-11 Score=117.85 Aligned_cols=181 Identities=13% Similarity=0.101 Sum_probs=129.8
Q ss_pred hhHHHHHHHHHHhhcchhHHHHHhHHHHHHHcCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHhHHhHHHHHH
Q 012002 232 PQLVIAVALQIFQQCTGINAIMFYAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLS 311 (473)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~ 311 (473)
++.++...+.+++............|.+.+++|++..+.++..+...++..++.+..|++.||+|||+.+..+.++..++
T Consensus 7 ~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~ 86 (412)
T TIGR02332 7 RRLIIFLFILFIFSFLDRINIGFAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLWGIA 86 (412)
T ss_pred hHHHHHHHHHHHHHHhhhhhHHHHHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHHHHH
Confidence 44455566666665666666677778777889999999999999999999999999999999999999998888887777
Q ss_pred HHHHHHHHhhhhccCCcccchhhHHHHHHHHHHHHHhhhccccccccccccccccccchhhhHHHHHHHHHHHHHHHHHH
Q 012002 312 QTVIAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQA 391 (473)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (473)
..+..+.. + .+... ..-++.+.......+....+..|.+|+++|+++.++.+....+|..+++.+
T Consensus 87 ~~~~~~~~------------~--~~~l~-~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~ 151 (412)
T TIGR02332 87 STATMFAT------------G--PESLY-LLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLIL 151 (412)
T ss_pred HHHHHHhc------------C--HHHHH-HHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77666531 1 11122 222222333333345555677899999999999999999999999999999
Q ss_pred HHHHhh------hhhhhHHHHHHHHH-HHHHHHHHhhccCCCC
Q 012002 392 FLSMLC------HFKFGIFLFFSGWV-LIMSCFVFFLLPETKN 427 (473)
Q Consensus 392 ~~~~~~------~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 427 (473)
.+.+.+ ..++...+.+.++. ++...+.++++||+++
T Consensus 152 ~~~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~ 194 (412)
T TIGR02332 152 SGYILALDGLMALKGWQWLFLLEGFPSVILGVMTWFWLDDSPD 194 (412)
T ss_pred HHHHHhCCCCCCccchhHHHHHHHHHHHHHHHHHhhccCCCcc
Confidence 888764 24566555554433 3444555566676543
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.5e-12 Score=114.96 Aligned_cols=179 Identities=12% Similarity=0.067 Sum_probs=136.6
Q ss_pred hhHHHHHHHHHHhhcchhHHHHHhHHHHHHHcCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHhHHhHHHHHH
Q 012002 232 PQLVIAVALQIFQQCTGINAIMFYAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLS 311 (473)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~ 311 (473)
.+.++...+.+......--.+..-.|.+.++.++|..+.|.+.+...+..-++.++.|.++||.+.|+.+..+.++.++.
T Consensus 28 ~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLilsai~ 107 (448)
T COG2271 28 IQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILSAIV 107 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHHHHHHHH
Confidence 34466666666655555556677778898999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhccCCcccchhhHHHHHHHHHHHHHhhhccccccccccccccccccchhhhHHHHHHHHHHHHHHHHHH
Q 012002 312 QTVIAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQA 391 (473)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (473)
.+++.+.. ..++..++..+-+.+-+.++.|. ...+..-+|+++||+..++-|+..++|+.+.|++
T Consensus 108 nil~Gfs~--------------s~~~~~~l~~lng~fQg~Gwpp~-~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~ 172 (448)
T COG2271 108 NILFGFSP--------------SLFLFAVLWVLNGWFQGMGWPPC-ARTITHWFSRKERGTWWSIWNTSHNIGGALAPLV 172 (448)
T ss_pred HHHHhhhh--------------HHHHHHHHHHHHHHHhcCCCcHH-HHHHHHHcCccccCceEEEehhhhhcccchHHHH
Confidence 99888752 22333333334444445555544 4455799999999999999999999999999999
Q ss_pred H--HHHhhhhhhhHHHHHHH-HHHHHHHHHHhhccCC
Q 012002 392 F--LSMLCHFKFGIFLFFSG-WVLIMSCFVFFLLPET 425 (473)
Q Consensus 392 ~--~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 425 (473)
. +.+..+.++...+++.+ +.+++++++++..+++
T Consensus 173 ~~la~~~~~~~w~~~f~~pgiiaiival~~~~~~rd~ 209 (448)
T COG2271 173 ALLAFFAFHGGWRAAFYFPGIIAIIVALILLFLLRDR 209 (448)
T ss_pred HHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 9 88888877666555544 4445555666665543
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.3e-12 Score=122.95 Aligned_cols=142 Identities=17% Similarity=0.104 Sum_probs=122.5
Q ss_pred CCcccCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhH--HHHHHHHHHHhhhhhh
Q 012002 22 SNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVAAQNL--AMLIVGRILLGCGVGF 99 (473)
Q Consensus 22 ~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~l~~i~~~~~~~~~~~--~~l~~~r~l~G~~~~~ 99 (473)
.+++|.++.+.+++.+.+.++..++.++.|++.||+|||+.+.++..+.+++.++..+.++. ..+++..++.|++.+.
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~ 311 (377)
T TIGR00890 232 GQSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPMLNDVLFLATVALVFFTWGG 311 (377)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcc
Confidence 35678888899999999999999999999999999999999999999999988888777643 3345667888998888
Q ss_pred hhhhhhHHHhhcCCCCCchhhHHHHHHHHHHHHHHHHHHhhhccccCCccchHHHHHhhhHHHHHHH
Q 012002 100 ANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLT 166 (473)
Q Consensus 100 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~ 166 (473)
..+....++.|.+|+++|+++.++.+....+|..++|.+ .+.+.++.||++.|.+.+++.++..
T Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~---~g~l~~~~g~~~~f~~~~~~~~~~~ 375 (377)
T TIGR00890 312 TISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLI---ASHALTEIGFEYTFIVTGAFALTSL 375 (377)
T ss_pred chhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHH---HHHHHhhhchhhHHHHHHHHHHHhc
Confidence 888888999999999999999999999999999999999 5555667899999998887766543
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.41 E-value=3.7e-12 Score=120.80 Aligned_cols=163 Identities=18% Similarity=0.155 Sum_probs=119.3
Q ss_pred hHHHHHhHHHHHHHcCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHhHHhHHHHHHHHHHHHHHhhhhccCCc
Q 012002 249 INAIMFYAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKDHSE 328 (473)
Q Consensus 249 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (473)
...+....|.+.+++|.+..+.++..+...++..++.++.|+++||+|||+.+..+.++..++..+....
T Consensus 10 ~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~---------- 79 (399)
T TIGR00893 10 RANLSFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFA---------- 79 (399)
T ss_pred HHhhhHhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHH----------
Confidence 3455566777778899999999999999999999999999999999999999998887777776666543
Q ss_pred ccchhhHHHHHHHHHHHHHhhhccccccccccccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHH
Q 012002 329 DLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHFKFGIFLFFS 408 (473)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (473)
+ +.+.......+ .+.......+....+..|.+|+++|+++.++.+....+|..+++.+.+.+.+..++...+...
T Consensus 80 --~--~~~~~~~~~~l-~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~ 154 (399)
T TIGR00893 80 --G--AYVSLYILRVL-LGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIE 154 (399)
T ss_pred --c--CHHHHHHHHHH-HHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHH
Confidence 1 12222222222 222233334566677889999999999999999999999999999999988887776665554
Q ss_pred HHHHHH-HHHHHhhccCCC
Q 012002 409 GWVLIM-SCFVFFLLPETK 426 (473)
Q Consensus 409 ~~~~~~-~~~~~~~~~~~~ 426 (473)
++..+. .++..+..++++
T Consensus 155 ~~~~~~~~~~~~~~~~~~~ 173 (399)
T TIGR00893 155 GVLGIIWGVLWLKFIPDPP 173 (399)
T ss_pred HHHHHHHHHHhhheecCCC
Confidence 444433 333344445443
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.4e-11 Score=117.02 Aligned_cols=173 Identities=10% Similarity=0.114 Sum_probs=125.6
Q ss_pred HHHHHHHHHhhcchhHHHHHhHHHHHHH-cCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhc-CcchhHhHHhHHHHHHH
Q 012002 235 VIAVALQIFQQCTGINAIMFYAPVLFKT-LGFGGSASLYSTVITGAVNVLSTLVSIYSVDKV-GRRMLLLEAGIQMFLSQ 312 (473)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~~~~~~~~ 312 (473)
++..+...+.....++.+..++|.++.+ +|++..+++...........++.+++|+++||+ |||+.+.++.++..++.
T Consensus 11 l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~ 90 (493)
T PRK15462 11 IYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGH 90 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHH
Confidence 5555556666677788888899988765 899999999999999999999999999999999 99999998888888776
Q ss_pred HHHHHHHhhhhccCCcccchhhHHHHHHHHHHHHHhhhcccccccccccccccccc--chhhhHHHHHHHHHHHHHHHHH
Q 012002 313 TVIAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLE--TRSAGQSVTVCVNLLFTFVIAQ 390 (473)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~~~~~~~~~~~~~~~~~~~ 390 (473)
+++... ...... ..........+. ....+...++.+|.+|++ .|.++.++.+...++|+.++|.
T Consensus 91 lll~~~------------~~~~~~-~~l~l~li~iG~-G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~ 156 (493)
T PRK15462 91 VVLGAS------------EIHPSF-LYLSLAIIVCGY-GLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPI 156 (493)
T ss_pred HHHHHh------------hcchhH-HHHHHHHHHHhc-ccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHH
Confidence 654321 000111 111111111111 222244456778999876 6999999999999999999999
Q ss_pred HHHHHhhhhhhhHHHHHHHHHHHHHHHHHhh
Q 012002 391 AFLSMLCHFKFGIFLFFSGWVLIMSCFVFFL 421 (473)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (473)
+.+++.+..++...+..+++..+.+++.+..
T Consensus 157 l~g~L~~~~Gw~~~F~iaaigm~l~li~~~~ 187 (493)
T PRK15462 157 ACGYAQEEYSWAMGFGLAAVGMIAGLVIFLC 187 (493)
T ss_pred HHHHHHhhhChHHHHHHHHHHHHHHHHHHHH
Confidence 9999998888777666666555555555443
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.41 E-value=3.7e-12 Score=119.93 Aligned_cols=150 Identities=18% Similarity=0.212 Sum_probs=126.0
Q ss_pred CCCcccCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhh
Q 012002 21 DSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVAAQNLAMLIVGRILLGCGVGFA 100 (473)
Q Consensus 21 ~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~l~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~ 100 (473)
+.+++|.++.+.+++.+.......++.++.|++.||+|||+++.++.++..+..+...+.++.+.+.+.+++.|++.+..
T Consensus 226 ~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~ 305 (375)
T TIGR00899 226 IIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAADNSLWALLMLQLLNAIFIGIL 305 (375)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567899999999988888888888999999999999999998888777776666667788888888999999999988
Q ss_pred hhhhhHHHhhcCCCCCchhhHHHHHHHHHHHHHHHHHHhhhccccCCccchHHHHHhhhHHHHHHHHHhhcccC
Q 012002 101 NQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVGSLLVTD 174 (473)
Q Consensus 101 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e 174 (473)
.+....++.|..|+ ++++++++++....+|..++|.+ .+.+.+..||+..|++.++..++..++..+++|
T Consensus 306 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~---~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 375 (375)
T TIGR00899 306 AGIGMLYFQDLMPG-RAGAATTLYTNTGRVGWIIAGSV---GGILAERWSYHAVYWFAIVMLIVALFCLLLIKD 375 (375)
T ss_pred HHHHHHHHHHhCcc-hhhHHHHHHHHHHHHHHHHHHHH---HHHHHHhccchhHHHHHHHHHHHHHHHHheecC
Confidence 88888999998875 56799999999999999999999 555555678999999988888777776655543
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=7.1e-12 Score=120.03 Aligned_cols=175 Identities=11% Similarity=0.023 Sum_probs=125.5
Q ss_pred HHHHHHHHHhhcchhHHHHHhHHHHHHHcCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHhHHhHHHHHHHHH
Q 012002 235 VIAVALQIFQQCTGINAIMFYAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTV 314 (473)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~ 314 (473)
++..++.+++.......+..+.|.+.+++|++..+.+...+...++..++.++.|++.||+|||+.+.++.++..++.++
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~ 104 (434)
T PRK11663 25 LITMYLGYALFYFTRKSFNAAMPEMLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGIINIL 104 (434)
T ss_pred HHHHHHHHHHHHHhhhhHHHhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHHHHHH
Confidence 44445555554444456677889999999999999999999999999999999999999999999998888887777765
Q ss_pred HHHHHhhhhccCCcccchhhHHHHHHHHHHHHHhhhccccccccccccccccccchhhhHHHHHHHHHHHHHHHHHHHHH
Q 012002 315 IAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLS 394 (473)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (473)
..... +.+.......+...+.+ ...+....+..|.+|+++|++++++.+....+|..+++.+.+.
T Consensus 105 ~~~~~--------------~~~~l~~~~~l~g~~~g-~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~ 169 (434)
T PRK11663 105 FGFSS--------------SLWAFALLWVLNAFFQG-WGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGA 169 (434)
T ss_pred HHHHh--------------HHHHHHHHHHHHHHHHH-ccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55431 11222222222222222 2234556677899999999999999999999999999999999
Q ss_pred HhhhhhhhHHHHHHHHHH-HHHHHHHhhccC
Q 012002 395 MLCHFKFGIFLFFSGWVL-IMSCFVFFLLPE 424 (473)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 424 (473)
+.+..++...+...++.. +.+++..+++++
T Consensus 170 l~~~~gw~~~f~~~~i~~~~~~~~~~~~~~~ 200 (434)
T PRK11663 170 IALHYGWRYGMMIAGIIAIVVGLFLCWRLRD 200 (434)
T ss_pred HHHcccHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 988888776665544433 333344444554
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=5e-12 Score=120.32 Aligned_cols=149 Identities=15% Similarity=0.081 Sum_probs=123.7
Q ss_pred CcccCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhhh
Q 012002 23 NYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVAAQNLAMLIVGRILLGCGVGFANQ 102 (473)
Q Consensus 23 ~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~l~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~ 102 (473)
++.|.+..+.+++.+...++..++.++.|+++||+|||+.+..+.....++.++..+.++.+.+.+.-++.|++.++..+
T Consensus 248 ~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 327 (406)
T PRK11551 248 VGQGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAAPSFAGMLLAGFAAGLFVVGGQS 327 (406)
T ss_pred HhCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhHHH
Confidence 44689999999999999999999999999999999999999888777777777777778888888888999998888889
Q ss_pred hhhHHHhhcCCCCCchhhHHHHHHHHHHHHHHHHHHhhhccccCCc-cchHHHHHhhhHHHHHHHHHhhcccC
Q 012002 103 AVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTSHIKSQ-WGWRISLGLAGIPAALLTVGSLLVTD 174 (473)
Q Consensus 103 ~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~-~~wr~~f~~~~~~~~~~~~~~~~~~e 174 (473)
...+++.|.+|+++|+++.++.+....+|..++|.+ .+.+.++ .+|...+++.....++..++.+++.+
T Consensus 328 ~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~---~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (406)
T PRK11551 328 VLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLL---AGQLLALGRSTVGVIGASIPVILVAALAALLLVS 397 (406)
T ss_pred HHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhh---HhhhhccCCchHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999 5555443 35666666666665555555444433
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=9.4e-12 Score=118.80 Aligned_cols=173 Identities=12% Similarity=-0.046 Sum_probs=119.7
Q ss_pred HhhcchhHHHHHhHHHHHHHcCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHhHHhHHHHHHHHHHHHHHhhh
Q 012002 243 FQQCTGINAIMFYAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIK 322 (473)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (473)
+....+........|.+.++.+.++.+.+...+...++..++.++.|+++||++||+.+..+..+.+++..........
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~- 105 (417)
T PRK10489 27 FISIFGLGLLGVAVPVQIQMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALNAFL- 105 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHHHHc-
Confidence 3344455566777888888888899999999999999999999999999999999999988777666655544332110
Q ss_pred hccCCcccchhhHHHHHHHHHHHHHhhhccccccccccccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 012002 323 VKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHFKFG 402 (473)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (473)
.....+.......+...+.+ ...+....+..|..|+++|+++.++.+....++..+++.+.+.+.+..++.
T Consensus 106 --------~~~~~~~l~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~~~ 176 (417)
T PRK10489 106 --------PEPSLLAIYLLGLWDGFFGS-LGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAAGGVA 176 (417)
T ss_pred --------CCCcHHHHHHHHHHHHHHHH-HHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHhhH
Confidence 01111222222222222211 122333456678899999999999999999999999999999998877766
Q ss_pred HHHHHHHHHHHHHHHHHhhccCC
Q 012002 403 IFLFFSGWVLIMSCFVFFLLPET 425 (473)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~ 425 (473)
..+.+.++..+.+.+..+.+|+.
T Consensus 177 ~~~~~~~~~~~~~~~~~~~l~~~ 199 (417)
T PRK10489 177 WNYGLAAAGTFITLLPLLRLPAL 199 (417)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCC
Confidence 66666655555555555556553
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.5e-11 Score=116.20 Aligned_cols=177 Identities=18% Similarity=0.115 Sum_probs=123.6
Q ss_pred HHHHHHHHHhhcchhHHHHHhHHHHHHHcCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHhHHhHHHHHHHHH
Q 012002 235 VIAVALQIFQQCTGINAIMFYAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTV 314 (473)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~ 314 (473)
.+......+.............|.+.+++|.+..+.++..+...++..++.++.|++.||+|||+.+..+.....++...
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~ 86 (385)
T TIGR00710 7 ALLLGCLSILGPLGIDMYLPAFPEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLG 86 (385)
T ss_pred HHHHHHHHHHHHHHHHHhcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHH
Confidence 33333334444444455555677888889999999999999999999999999999999999999999887777776666
Q ss_pred HHHHHhhhhccCCcccchhhHHHHHHHHHHHHHhhhccccccccccccccccccchhhhHHHHHHHHHHHHHHHHHHHHH
Q 012002 315 IAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLS 394 (473)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (473)
.... + ..+.... ..+..+.......+....+..|.+|+++|+++.++.+....++..+++.+.+.
T Consensus 87 ~~~~------------~--~~~~~~~-~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~ 151 (385)
T TIGR00710 87 LALS------------N--NIETLLV-LRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGY 151 (385)
T ss_pred HHHH------------c--cHHHHHH-HHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5543 1 1122222 22222222223334556777899999999999999999999999999999999
Q ss_pred HhhhhhhhHHHHHHHHH-HHHHHHHHhhccCCC
Q 012002 395 MLCHFKFGIFLFFSGWV-LIMSCFVFFLLPETK 426 (473)
Q Consensus 395 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 426 (473)
+.+..++...+...++. .+..++..+..||++
T Consensus 152 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (385)
T TIGR00710 152 ILVWLSWHAIFAFLSLAGILLSALIFFILPETL 184 (385)
T ss_pred HHHHcCHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 88877776555444433 333444444555543
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.37 E-value=3.4e-12 Score=122.78 Aligned_cols=142 Identities=11% Similarity=0.044 Sum_probs=118.3
Q ss_pred CcccCCCchhHHHHHHHHHHHHHHHHHHHHhhhh--hhhHHHHH--HHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhh
Q 012002 23 NYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRR--LGRRLTML--IAGIFFIAGVAFNVAAQNLAMLIVGRILLGCGVG 98 (473)
Q Consensus 23 ~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~Dr--~Grr~~l~--~~~~l~~i~~~~~~~~~~~~~l~~~r~l~G~~~~ 98 (473)
+++|++..+.+++.+...++..++.++.|+++|| +++|+... .+.++.+++.+++.+.++++.+++.+++.|++.+
T Consensus 269 ~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~i~~~~~G~~~g 348 (455)
T TIGR00892 269 KDKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALAGDYTGLVIYCIFFGLSFG 348 (455)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhc
Confidence 4568999999999999999999999999999997 33443333 3444455666667778899999999999999999
Q ss_pred hhhhhhhHHHhhcCCCCCchhhHHHHHHHHHHHHHHHHHHhhhccccCCcc-chHHHHHhhhHHHHHHHH
Q 012002 99 FANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTSHIKSQW-GWRISLGLAGIPAALLTV 167 (473)
Q Consensus 99 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~-~wr~~f~~~~~~~~~~~~ 167 (473)
...+...+++.|.+|++++++.+++++....+|.++||.+ .+.+.+.. +|++.|++.+++.++..+
T Consensus 349 ~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i---~G~l~~~~g~~~~~f~~~~~~~li~~~ 415 (455)
T TIGR00892 349 SVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPL---AGRLVDATKNYKYIFYASGSIVVSAGL 415 (455)
T ss_pred hHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccc---eeeeehhcCCcchHHHHhhHHHHHHHH
Confidence 9999999999999999999999999999999999999999 66666655 599999998887665544
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=3.1e-11 Score=114.12 Aligned_cols=160 Identities=13% Similarity=0.002 Sum_probs=115.0
Q ss_pred HHHHHhHHHHHHHcCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHhHHhHHHHHHHHHHHHHHhhhhccCCcc
Q 012002 250 NAIMFYAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKDHSED 329 (473)
Q Consensus 250 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (473)
+......|.+.+++|.+..+.++..+...++..++.+..|++.||+|||+.+..+.....++.+.....
T Consensus 26 ~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~----------- 94 (390)
T PRK03545 26 FVPVGLLSDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIASHVLSALA----------- 94 (390)
T ss_pred HHHHcchHHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHh-----------
Confidence 334445688888999999999999999999999999999999999999999999888877776665543
Q ss_pred cchhhHHHHHHHHHHHHHhhhccccccccccccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHH
Q 012002 330 LHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHFKFGIFLFFSG 409 (473)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (473)
+ +.+...+.-. ..+.......+....+..|.+|+++|+++.|+......++..++|++.+.+.+..++...+...+
T Consensus 95 -~--~~~~l~~~r~-~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~ 170 (390)
T PRK03545 95 -W--NFTVLLISRI-GIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYLGWRTTFLAIG 170 (390)
T ss_pred -c--cHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHH
Confidence 1 1122222222 22222222234455667899999999999999999999999999999999888878776555544
Q ss_pred HHHHH-HHHHHhhccC
Q 012002 410 WVLIM-SCFVFFLLPE 424 (473)
Q Consensus 410 ~~~~~-~~~~~~~~~~ 424 (473)
+..+. ........|+
T Consensus 171 ~~~~l~~~~~~~~~~~ 186 (390)
T PRK03545 171 GGALITLLLLIKLLPL 186 (390)
T ss_pred HHHHHHHHHHHHhCCC
Confidence 44333 3333444454
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.7e-11 Score=114.94 Aligned_cols=169 Identities=11% Similarity=0.047 Sum_probs=120.9
Q ss_pred HHhhcchhHHHHHhHHHHHHHcCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHhHHhHHHHHHHHHHHHHHhh
Q 012002 242 IFQQCTGINAIMFYAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGI 321 (473)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (473)
.+....+........|.+..+.+.+..+.+...+...++..++.++.|+++||+|||+.+..+..+..++..+.......
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~ 87 (365)
T TIGR00900 8 QLISLIGTAITQVALPLYVLAGTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVALL 87 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHc
Confidence 33344445566667788888889999999999999999999999999999999999999998877776666655543210
Q ss_pred hhccCCcccchhhHHHHHHHHHHHHHhhhccccccccccccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 012002 322 KVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHFKF 401 (473)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (473)
.....+....... ..+.......+...++..|.+|+++|+++.++.+....+|..+++.+.+.+.+..++
T Consensus 88 ---------~~~~~~~~~~~~~-l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~ 157 (365)
T TIGR00900 88 ---------GGLNIWQVYVLAG-ILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGI 157 (365)
T ss_pred ---------CCCcHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 0011222222222 222223333455667788999999999999999999999999999999999888887
Q ss_pred hHHHHHHHHHHHHHHHHHh
Q 012002 402 GIFLFFSGWVLIMSCFVFF 420 (473)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~ 420 (473)
...+...++..+.+.+..+
T Consensus 158 ~~~~~~~~~~~~~~~~~~~ 176 (365)
T TIGR00900 158 KWAIWVDAVGFAISALLIV 176 (365)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 7666555554444444333
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=99.36 E-value=3.1e-11 Score=116.34 Aligned_cols=175 Identities=13% Similarity=0.095 Sum_probs=129.2
Q ss_pred HHHHHHHHHHhhcchhHHHHHhHHHHHHH---cCCCCcchHHHHHHHHHHHHHHHHHHHHHHhh-cCcchhHhHHhHHHH
Q 012002 234 LVIAVALQIFQQCTGINAIMFYAPVLFKT---LGFGGSASLYSTVITGAVNVLSTLVSIYSVDK-VGRRMLLLEAGIQMF 309 (473)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~~~~~~~~~~~~~~~ 309 (473)
.++.+.+..++...+++.+..++|.++++ +|++..+++.......++..++.+++|+++|| +|||+.+..+..+..
T Consensus 11 ~~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~ 90 (475)
T TIGR00924 11 PLFTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLM 90 (475)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHH
Confidence 35666666777777888888888888764 79999999999999999999999999999999 899999999988888
Q ss_pred HHHHHHHHHHhhhhccCCcccchhhHHHHHHHHHHHHHhhhccccccccccccccccccc---hhhhHHHHHHHHHHHHH
Q 012002 310 LSQTVIAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLET---RSAGQSVTVCVNLLFTF 386 (473)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~---~~~~~~~~~~~~~~~~~ 386 (473)
++.+++... + . .+.......+ .+.......+....+.++.+|++. |+++.++.+...++|..
T Consensus 91 ~g~~~~~~~------------~-~-~~~~~~~~~l-~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ 155 (475)
T TIGR00924 91 LGHFMLAMS------------I-Y-PDLIFYGLGT-IAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSF 155 (475)
T ss_pred HHHHHHHhc------------c-c-HhHHHHHHHH-HHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHH
Confidence 877666542 1 1 1112222222 222223334555667778887754 88899999999999999
Q ss_pred HHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhcc
Q 012002 387 VIAQAFLSMLCHFKFGIFLFFSGWVLIMSCFVFFLLP 423 (473)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (473)
++|.+.+.+.++.++...+...++..+.+.+.+...+
T Consensus 156 ig~~l~g~l~~~~g~~~~f~~~~~~~~~~~l~~~~~~ 192 (475)
T TIGR00924 156 ISPLLAGVIAENYGYHVGFNLAAVGMVIGLLTFFAGR 192 (475)
T ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHcc
Confidence 9999999999887877766665555555544444433
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.7e-11 Score=116.12 Aligned_cols=161 Identities=10% Similarity=0.034 Sum_probs=119.0
Q ss_pred HHHHHHHHHhhcchhHHHHHhHHHHHHHcCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHhHHhHHHHHHHHH
Q 012002 235 VIAVALQIFQQCTGINAIMFYAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTV 314 (473)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~ 314 (473)
.....+..+.............|.+.+++|.++.+.+...+...++..++.++.|+++||+|||+.+..+.+...++..+
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~ 99 (426)
T PRK12307 20 LFSAWLGYVFDGFDFMLIFYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGTGL 99 (426)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHH
Confidence 44455555555555666666777777889999999999999999999999999999999999999999998888887776
Q ss_pred HHHHHhhhhccCCcccchhhHHHHHHHHHHHHHhhhccccccccccccccccccchhhhHHHHHHHHHHHHHHHHHHHHH
Q 012002 315 IAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLS 394 (473)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (473)
..... ..+...+.- +..+.......+....++.|.+|++.|+++.++......+|..+++.+.+.
T Consensus 100 ~~~~~--------------~~~~l~~~r-~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~ 164 (426)
T PRK12307 100 SGLAS--------------GVIMLTLSR-FIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPS 164 (426)
T ss_pred HHHHh--------------HHHHHHHHH-HHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHH
Confidence 65532 112222222 222222222334556677899999999999999999999999999998888
Q ss_pred HhhhhhhhHHHHHHHH
Q 012002 395 MLCHFKFGIFLFFSGW 410 (473)
Q Consensus 395 ~~~~~~~~~~~~~~~~ 410 (473)
+.+..++...+.+..+
T Consensus 165 l~~~~~w~~~f~i~~~ 180 (426)
T PRK12307 165 FAEAYGWRAAFFVGLL 180 (426)
T ss_pred HcccCCHHHHHHHHHH
Confidence 8887777666655443
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.36 E-value=4.9e-11 Score=112.59 Aligned_cols=149 Identities=11% Similarity=0.045 Sum_probs=111.7
Q ss_pred HHHHHhHHHHHHHcCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHhHHhHHHHHHHHHHHHHHhhhhccCCcc
Q 012002 250 NAIMFYAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKDHSED 329 (473)
Q Consensus 250 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (473)
+......|.+.+++|.++.+.+...+...++..++.++.|++.||+|||+.+..+.++..++.+.....
T Consensus 37 ~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~----------- 105 (394)
T PRK10213 37 FLPVSLLTPMAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSFA----------- 105 (394)
T ss_pred HHHHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHH-----------
Confidence 344445677788899999999999999999999999999999999999999999988888776655442
Q ss_pred cchhhHHHHHHHHHHHHHhhhccccccccccccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHH
Q 012002 330 LHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHFKFGIFLFFSG 409 (473)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (473)
+ +.+..++.-. ..+.......+....++.|.+|+++|+.+.++......++..++|.+.+.+.+..++...+.+.+
T Consensus 106 -~--~~~~l~~~r~-l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~ 181 (394)
T PRK10213 106 -N--SFSLLLIGRA-CLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAA 181 (394)
T ss_pred -C--hHHHHHHHHH-HHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHH
Confidence 1 1222222222 22222222335566777899999999999999999999999999999999998888776665544
Q ss_pred HHHH
Q 012002 410 WVLI 413 (473)
Q Consensus 410 ~~~~ 413 (473)
+..+
T Consensus 182 ~l~~ 185 (394)
T PRK10213 182 VMGV 185 (394)
T ss_pred HHHH
Confidence 4333
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=3.6e-11 Score=116.75 Aligned_cols=164 Identities=14% Similarity=0.026 Sum_probs=121.8
Q ss_pred HHHHHHHHHHhhcchhHHHHHhHHHHHHHcCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHhHHhHHHHHHHH
Q 012002 234 LVIAVALQIFQQCTGINAIMFYAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQT 313 (473)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~ 313 (473)
.++...+..++.......+..+.|.+.+++|.++.+.++..+...++..++.++.|+++||+|||+.+..+..+..++.+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~ 90 (471)
T PRK10504 11 QLWIVAFGFFMQSLDTTIVNTALPSMAQSLGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGSL 90 (471)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHH
Confidence 35666666777777777788899999999999999999988888899999999999999999999999887766666655
Q ss_pred HHHHHHhhhhccCCcccchhhHHHHHHHHHHHHHhhhccccccccccccccccccchhhhHHHHHHHHHHHHHHHHHHHH
Q 012002 314 VIAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFL 393 (473)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (473)
..... + ..+..... -.+.+.......+....+..|.+|++.|+++.|+.+....++..++|.+.+
T Consensus 91 ~~~~~------------~--~~~~l~~~-~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g 155 (471)
T PRK10504 91 FCALS------------G--TLNELLLA-RVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGG 155 (471)
T ss_pred HHHHh------------C--CHHHHHHH-HHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 44331 1 11112222 222222222333455667789999999999999999999999999999999
Q ss_pred HHhhhhhhhHHHHHHHHHH
Q 012002 394 SMLCHFKFGIFLFFSGWVL 412 (473)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~ 412 (473)
.+.++.++...+.+.....
T Consensus 156 ~l~~~~gw~~~f~~~~~~~ 174 (471)
T PRK10504 156 LLVEYASWHWIFLINIPVG 174 (471)
T ss_pred HHHhhccHHHHHHHHHHHH
Confidence 9998888766555544433
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=7.8e-12 Score=118.38 Aligned_cols=137 Identities=13% Similarity=0.133 Sum_probs=120.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhhhhhhHHHhh
Q 012002 31 GLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVAAQNLAMLIVGRILLGCGVGFANQAVPLFLSE 110 (473)
Q Consensus 31 ~~~~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~l~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~ 110 (473)
+.++..+.+.++..+++++.|++.||+|+|+.+..+..+.+++.++..+.++.+.+++++++.|++.+...+.....+.|
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~ 329 (392)
T PRK12382 250 MAGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLAPTAWVALAGAALTGAGCSLIFPALGVEVVK 329 (392)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 35666777888889999999999999999999999999999998888888888888899999999999888888889999
Q ss_pred cCCCCCchhhHHHHHHHHHHHHHHHHHHhhhccccCCccchHHHHHhhhHHHHHHHHHhh
Q 012002 111 IAPTRIRGGLNILFQLNVTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVGSL 170 (473)
Q Consensus 111 ~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~ 170 (473)
.+|+++|++++++.+....+|..++|.+ .+.+.++.||+..|.+.++..++..++.+
T Consensus 330 ~~~~~~~g~~~g~~~~~~~~g~~ig~~~---~g~l~~~~g~~~~~~~~~~~~~~~~~~~~ 386 (392)
T PRK12382 330 RVPSQVRGTALGGYAAFQDIAYGVSGPL---AGMLATSFGYPSVFLAGAISAVLGIIVTI 386 (392)
T ss_pred hcCHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhCchHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999 55666678999999998888777666544
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.34 E-value=7.9e-11 Score=106.76 Aligned_cols=175 Identities=15% Similarity=0.087 Sum_probs=140.4
Q ss_pred HHHHHHHHHHhhcchhHHHHHhHHHHHHHcCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHhHHhHHHHHHHH
Q 012002 234 LVIAVALQIFQQCTGINAIMFYAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQT 313 (473)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~ 313 (473)
.++.+.+..|+.....+...-.+|.+-+++|.|..++|...+.++++..++.++...+.+|+.||+++.....+..++.+
T Consensus 14 ~l~aLa~~~F~igttEfv~~gLLp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi~~n~ 93 (394)
T COG2814 14 ALLALALAAFAIGTTEFVPVGLLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNL 93 (394)
T ss_pred HHHHHHHHHHHHHhHHHHHHhchHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHH
Confidence 36777778888888888888999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHhhhhccCCcccchhhHHHHHHHHHHHHHhhhccccccccccccccccccchhhhHHHHHHHHHHHHHHHHHHHH
Q 012002 314 VIAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFL 393 (473)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (473)
+..+... ...+...=+..+.....+.++...+..++.|+++|+++.++......++..++.++..
T Consensus 94 l~alAp~---------------f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt 158 (394)
T COG2814 94 LSALAPS---------------FAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGT 158 (394)
T ss_pred HHHHhcc---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHH
Confidence 8887521 1122222222222223333466778899999999999999999999999999999999
Q ss_pred HHhhhhhhhHHH-HHHHHHHHHHHHHHhhcc
Q 012002 394 SMLCHFKFGIFL-FFSGWVLIMSCFVFFLLP 423 (473)
Q Consensus 394 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 423 (473)
++-+.+||...+ .++.+..+..+..+..+|
T Consensus 159 ~ig~~~GWR~~F~~ia~l~ll~~~~~~~~lP 189 (394)
T COG2814 159 FLGQLFGWRATFLAIAVLALLALLLLWKLLP 189 (394)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 999999887554 455555556666677777
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=7.5e-11 Score=111.61 Aligned_cols=170 Identities=11% Similarity=0.037 Sum_probs=119.8
Q ss_pred CchhHHHHHHHHHHhhcchhHHHHHhHHHHHHHcCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHhHHhHHHH
Q 012002 230 NRPQLVIAVALQIFQQCTGINAIMFYAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMF 309 (473)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~ 309 (473)
++++..+...+.++.............|.+.+++|++..+.+...+...++..++.++.|++.||+|||+.+..+.....
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~ 83 (394)
T PRK03699 4 NRIKLTWISFLSYALTGALVIVTGMVMGPIAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALMI 83 (394)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 44455666666666665556667777888888999999999999999999999999999999999999999988877777
Q ss_pred HHHHHHHHHHhhhhccCCcccchhhHHHHHHHHHHHHHhhhccccccccccccccccccchhhhHHHHHHHHHHHHHHHH
Q 012002 310 LSQTVIAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIA 389 (473)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 389 (473)
++..+.... + +.+.......+...+.+ ...+....++.|.+|++.|+.+.+..+....+++.++|
T Consensus 84 i~~~l~~~~------------~--~~~~~~~~~~l~G~~~g-~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~ 148 (394)
T PRK03699 84 LAVAGLMFS------------H--SLALFSIAMFVLGVVSG-ITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFP 148 (394)
T ss_pred HHHHHHHHc------------c--hHHHHHHHHHHHHHhhH-hhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHH
Confidence 666655542 1 11222222222222222 22234456678999999999999998888888889999
Q ss_pred HHHHHHhhh-hhhhHHHHHHHHHHHH
Q 012002 390 QAFLSMLCH-FKFGIFLFFSGWVLIM 414 (473)
Q Consensus 390 ~~~~~~~~~-~~~~~~~~~~~~~~~~ 414 (473)
.+.+.+.+. .++...+...++..+.
T Consensus 149 ~~~~~l~~~~~gw~~~f~~~~~~~~~ 174 (394)
T PRK03699 149 IIAAYLLARSIEWYWVYACIGLVYVA 174 (394)
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHH
Confidence 988887653 4666555544444333
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.4e-11 Score=116.04 Aligned_cols=164 Identities=13% Similarity=0.088 Sum_probs=117.4
Q ss_pred chhHHHHHhHHHHHHHcCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHhHHhHHHHHHHHHHHHHHhhhhccC
Q 012002 247 TGINAIMFYAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKDH 326 (473)
Q Consensus 247 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (473)
.....+....|.+.+++|.+..+.+.+.+...++..++.++.|+++||+|||+.+..+..+..++.++.....
T Consensus 9 ~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~------- 81 (379)
T TIGR00881 9 LVRKNFALAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFST------- 81 (379)
T ss_pred HhHHhhhhhhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHhh-------
Confidence 3445566677888888999999999999999999999999999999999999999998888777777665531
Q ss_pred CcccchhhHHHHHHHHHHHHHhhhccccccccccccccccccchhhhHHHHHHHHHHHHHHHHH-HHHHHhhhhhhhHHH
Q 012002 327 SEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQ-AFLSMLCHFKFGIFL 405 (473)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 405 (473)
..+..+ ...++.+.......+....+..|.+|+++|+++.++.+....+|..+++. +.+.+.+..++...+
T Consensus 82 -------~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 153 (379)
T TIGR00881 82 -------SLWVMA-ALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVF 153 (379)
T ss_pred -------hHHHHH-HHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHH
Confidence 122222 22233333333444566778889999999999999999999999999994 555555555555544
Q ss_pred HHHH-HHHHHHHHHHhhccCC
Q 012002 406 FFSG-WVLIMSCFVFFLLPET 425 (473)
Q Consensus 406 ~~~~-~~~~~~~~~~~~~~~~ 425 (473)
...+ +..+..++..++.+++
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~ 174 (379)
T TIGR00881 154 IVPGIIAIIVSLICFLLLRDS 174 (379)
T ss_pred HHHHHHHHHHHHHHheeeCCC
Confidence 4433 3334444445555543
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.34 E-value=8.8e-12 Score=120.59 Aligned_cols=148 Identities=12% Similarity=0.046 Sum_probs=112.0
Q ss_pred CCCcccCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHH--HHHhhhHHHHHHHHHHHhhhhh
Q 012002 21 DSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAF--NVAAQNLAMLIVGRILLGCGVG 98 (473)
Q Consensus 21 ~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~l~~i~~~~--~~~~~~~~~l~~~r~l~G~~~~ 98 (473)
+++++|++..+.++..+...++..++.+++|+++||+|||+.+.....+..++..+ ....++.+.+.+.+++.|++..
T Consensus 285 l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~ 364 (467)
T PRK09556 285 AFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALIIFTLGVYQHATSEYMYLASLFALGFLVF 364 (467)
T ss_pred HHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHh
Confidence 45678999999999999999999999999999999999998876655444443322 2234566677788888886544
Q ss_pred hhhhhhhHHHhhcCCCCCchhhHHHHHHHHHH-HHHHHHHHhhhccccCC------------ccchHHHHHhhhHHHHHH
Q 012002 99 FANQAVPLFLSEIAPTRIRGGLNILFQLNVTI-GILFANLVNYGTSHIKS------------QWGWRISLGLAGIPAALL 165 (473)
Q Consensus 99 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~l-G~~~~~~~~~~~~~~~~------------~~~wr~~f~~~~~~~~~~ 165 (473)
...........|.+|+++|+++.|+.+....+ |..++|.+ .+.+.+ ..+|+..|++..+..++.
T Consensus 365 ~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~---~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~ 441 (467)
T PRK09556 365 GPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVG---LGMIADPTKNGTPIFGYTLTGWAGTFAALDIAAIGC 441 (467)
T ss_pred hHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhh---HHHHhcccccccccccccccChHHHHHHHHHHHHHH
Confidence 44444446677999999999999999988886 77888888 444444 467999999887777776
Q ss_pred HHHhhc
Q 012002 166 TVGSLL 171 (473)
Q Consensus 166 ~~~~~~ 171 (473)
.+..++
T Consensus 442 ~~~~~~ 447 (467)
T PRK09556 442 ICLMAI 447 (467)
T ss_pred HHHHHH
Confidence 555443
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.4e-11 Score=114.38 Aligned_cols=142 Identities=16% Similarity=0.082 Sum_probs=125.2
Q ss_pred CcccCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhhh
Q 012002 23 NYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVAAQNLAMLIVGRILLGCGVGFANQ 102 (473)
Q Consensus 23 ~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~l~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~ 102 (473)
+++|.++.++|++.+...++..++.++.+++.||+|+|+.+.++.++.++..++.+++++.+.+++.+++.|++.+...+
T Consensus 233 ~~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~q~l~g~~~~~~~~ 312 (382)
T TIGR00902 233 QAAGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAIEAFPLIFLLQILHCGTFAVCHL 312 (382)
T ss_pred HHCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHH
Confidence 34799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHhhcCCCCCchhhHHHHH-HHHHHHHHHHHHHhhhccccCCccchHHHHHhhhHHHHHHHHHh
Q 012002 103 AVPLFLSEIAPTRIRGGLNILFQ-LNVTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVGS 169 (473)
Q Consensus 103 ~~~~~i~~~~~~~~r~~~~~~~~-~~~~lG~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~ 169 (473)
....++.+. |+++|++..++++ ...++|.++++.+ .+.+.++.|+ ..|++.+.++++..++.
T Consensus 313 ~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~---~G~l~~~~g~-~~~~~~~~~~~~~~~~~ 375 (382)
T TIGR00902 313 AAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAF---AGFIYPTLGA-GTFVFMAIIAAAAFFLI 375 (382)
T ss_pred HHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhccH-HHHHHHHHHHHHHHHHH
Confidence 999999998 8889999999986 5778999999999 5556666776 56777777766555443
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=4.8e-11 Score=112.96 Aligned_cols=177 Identities=12% Similarity=0.114 Sum_probs=123.3
Q ss_pred HHHHHHHHHhhcchhHHHHHhHHHHHHHcCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHhHHhHHHHHHHHH
Q 012002 235 VIAVALQIFQQCTGINAIMFYAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTV 314 (473)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~ 314 (473)
+.+.....+....+........|.+.+++|.+..+.+...+...++..++.++.|+++||+|||+.+..+.....++...
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~ 84 (392)
T PRK10473 5 LLCSFALVLLYPAGIDMYLVGLPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLL 84 (392)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHH
Confidence 44444555555555666667888888899999999999999999999999999999999999999999887777766665
Q ss_pred HHHHHhhhhccCCcccchhhHHHHHHHHHHHHHhhhccccccccccccccccccchhhhHHHHHHHHHHHHHHHHHHHHH
Q 012002 315 IAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLS 394 (473)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (473)
.... ++ .+.......+ .+.......+....+..|.+|+++|+++.++.+....++..++|.+.+.
T Consensus 85 ~~~~------------~~--~~~~~~~~~l-~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~ 149 (392)
T PRK10473 85 CSLA------------ET--SSLFLAGRFL-QGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHL 149 (392)
T ss_pred HHHh------------Cc--HHHHHHHHHH-HHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5432 11 1111222222 2222222223456677899999999999999999999999999999888
Q ss_pred HhhhhhhhHHHHH-HHHHHHHHHHHHhhccCCC
Q 012002 395 MLCHFKFGIFLFF-SGWVLIMSCFVFFLLPETK 426 (473)
Q Consensus 395 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 426 (473)
+.+..++...+.+ +.+..+..++..+..+|++
T Consensus 150 l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~ 182 (392)
T PRK10473 150 IMLKFPWQSLFYTMAAMGILVLLLSLFILKETR 182 (392)
T ss_pred HHhCcChHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 8777776554444 3344444444455566543
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.4e-11 Score=117.36 Aligned_cols=137 Identities=21% Similarity=0.127 Sum_probs=120.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhhhhhhHHHhhc
Q 012002 32 LQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVAAQNLAMLIVGRILLGCGVGFANQAVPLFLSEI 111 (473)
Q Consensus 32 ~~~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~l~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~ 111 (473)
.+.+.+...++..++.+..|+++||+|||+.+..+..+..++.+...+.++.+.+++.+++.|++.+...+...+++.+.
T Consensus 260 ~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 339 (408)
T PRK09874 260 SGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFVQTPLQLGILRFLLGAADGALLPAVQTLLVYN 339 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhHhhHHHHHHHHHHh
Confidence 46667777888889999999999999999999999988888888888888889999999999999999999999999999
Q ss_pred CCCCCchhhHHHHHHHHHHHHHHHHHHhhhccccCCccchHHHHHhhhHHHHHHHHHhhc
Q 012002 112 APTRIRGGLNILFQLNVTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVGSLL 171 (473)
Q Consensus 112 ~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~ 171 (473)
.|+++|++.+++.+....+|..+||.+ .+.+.++.||+..|++.+++.++..+..++
T Consensus 340 ~~~~~~g~~~~~~~~~~~~g~~~gp~~---~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~ 396 (408)
T PRK09874 340 SSNQIAGRIFSYNQSFRDIGNVTGPLM---GAAISANYGFRAVFLVTAGVVLFNAVYSWN 396 (408)
T ss_pred CCcccceeeehHHHHHHHHHHHhhHHH---HHHHHhhcchhHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999 555556678999999999888877666443
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.6e-11 Score=115.68 Aligned_cols=144 Identities=15% Similarity=0.129 Sum_probs=118.6
Q ss_pred CcccCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhhh
Q 012002 23 NYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVAAQNLAMLIVGRILLGCGVGFANQ 102 (473)
Q Consensus 23 ~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~l~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~ 102 (473)
++.|.+.++.+++.+...++..+++++.|++.||+|+|+++..+..+.+++.+... +........++.|++.+...|
T Consensus 228 ~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~---~~~~~~~~~~l~g~~~~~~~p 304 (381)
T PRK03633 228 NHQGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAML---SQAAMAPALFILGAAGFTLYP 304 (381)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHh---hhHHHHHHHHHHHHHHHhHHH
Confidence 34588899999999999999999999999999999999999988888777665543 223445577888888888899
Q ss_pred hhhHHHhhcCCCCCchhhHHHHHHHHHHHHHHHHHHhhhccccCCccchHHHHHhhhHHHHHHHHHhhcc
Q 012002 103 AVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVGSLLV 172 (473)
Q Consensus 103 ~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~ 172 (473)
...+++.|..|+++++...+..+...++|.++||.+ .+.+.++.+|++.|.+.+.+.++..+..++.
T Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~---~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~ 371 (381)
T PRK03633 305 VAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSF---TAMLMQNYSDNLLFIMIASVSFIYLLMLLRK 371 (381)
T ss_pred HHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhCccHHHHHHHHHHHHHHHHHHhc
Confidence 999999999988888888888888899999999999 5556667889999999888877666554443
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=5.6e-11 Score=116.34 Aligned_cols=177 Identities=12% Similarity=0.025 Sum_probs=126.1
Q ss_pred hHHHHHHHHHHhhcchhHHHHHhHHHHHHHcCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHhHHhHHHHHHH
Q 012002 233 QLVIAVALQIFQQCTGINAIMFYAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQ 312 (473)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~ 312 (473)
+.+....+..+.............|.+.+++|.+..+.+...+...++..++.++.|++.||+|||+.+..+.+...++.
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~ 99 (496)
T PRK03893 20 KAFSAAWLGYLLDGFDFVLITLVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLFSVGT 99 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHH
Confidence 34555556666656666667777788888899999999999999999999999999999999999999998887777776
Q ss_pred HHHHHHHhhhhccCCcccchhhHHHHHHHHHHHHHhhhccccccccccccccccccchhhhHHHHHHHHHHHHHHHHHHH
Q 012002 313 TVIAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAF 392 (473)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (473)
++..... +.+.... ..++.+.......+....++.|.+|++.|+.+.++......+|..+++.+.
T Consensus 100 ~~~~~~~--------------~~~~l~~-~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~ 164 (496)
T PRK03893 100 LACGFAP--------------GYWTLFI-ARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVY 164 (496)
T ss_pred HHHHHHh--------------HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6655431 1122222 222222222223344456678999999999999999999999999999999
Q ss_pred HHHhhhhhhhHHHHHHHHHHHHHHHHHhhccC
Q 012002 393 LSMLCHFKFGIFLFFSGWVLIMSCFVFFLLPE 424 (473)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (473)
+.+.+..++...+.+.++..+...+.....|+
T Consensus 165 ~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~p~ 196 (496)
T PRK03893 165 SLVVPVWGWRALFFIGILPIIFALWLRKNLPE 196 (496)
T ss_pred HHHhccCCHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99988877776665544433333333333343
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.9e-11 Score=112.71 Aligned_cols=160 Identities=16% Similarity=0.112 Sum_probs=116.5
Q ss_pred HhhcchhHHHHHhHH-HHHHHcCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHhHHhHHHHHHHHHHHHHHhh
Q 012002 243 FQQCTGINAIMFYAP-VLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGI 321 (473)
Q Consensus 243 ~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (473)
+.............| .+.+++|.+..+.++..+...++..++.++.|+++||+|||+.+..+.++..++..+..+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~--- 82 (352)
T PF07690_consen 6 FLSGFGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAFA--- 82 (352)
T ss_dssp HHHHHHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhhh---
Confidence 333344455666667 5667799999999999999999999999999999999999999998888888874444421
Q ss_pred hhccCCcccchhhHHHHHHHHHHHHHhhhccccccccccccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 012002 322 KVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHFKF 401 (473)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (473)
+ +.+ .+....+..+.......+....++.|.+|+++|+++.++.+....+|..+++.+.+.+.+..++
T Consensus 83 ---------~--~~~-~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~ 150 (352)
T PF07690_consen 83 ---------S--NFW-LLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGW 150 (352)
T ss_dssp ---------C--CHH-HHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHH
T ss_pred ---------h--hHH-HHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhcccc
Confidence 1 122 2222222333333334456677788999999999999999999999999999999999888777
Q ss_pred hHHHHHHHHHHHHHHH
Q 012002 402 GIFLFFSGWVLIMSCF 417 (473)
Q Consensus 402 ~~~~~~~~~~~~~~~~ 417 (473)
...+.+.++..+...+
T Consensus 151 ~~~~~~~~~~~~~~~i 166 (352)
T PF07690_consen 151 RWAFLISAILSLIAAI 166 (352)
T ss_dssp CCHHHHHHHHHHHHHH
T ss_pred ccccccccchhhhhhh
Confidence 6655555555544444
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=3.7e-11 Score=117.04 Aligned_cols=158 Identities=18% Similarity=0.103 Sum_probs=117.7
Q ss_pred CCCCCcccCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhh--hH-H-HHHHHHHHHh
Q 012002 19 GDDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVAAQ--NL-A-MLIVGRILLG 94 (473)
Q Consensus 19 ~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~l~~i~~~~~~~~~--~~-~-~l~~~r~l~G 94 (473)
|.+.++.|.+....++......+...++.+++|+++||+|||++++.+.++.+++.++.+... +. + ....+.++.+
T Consensus 295 p~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~ 374 (479)
T PRK10077 295 PEIFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYV 374 (479)
T ss_pred HHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHH
Confidence 344456688877778888888889999999999999999999999999999998888776542 11 1 2233344444
Q ss_pred hhhhh-hhhhhhHHHhhcCCCCCchhhHHHHHHHHHHHHHHHHHHhhhc---cccCCccchHHHHHhhhHHHHHHHHHhh
Q 012002 95 CGVGF-ANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGT---SHIKSQWGWRISLGLAGIPAALLTVGSL 170 (473)
Q Consensus 95 ~~~~~-~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~---~~~~~~~~wr~~f~~~~~~~~~~~~~~~ 170 (473)
.+.+. ..+....++.|.+|+++|++++++.+....+|.++++.+.... +.+.++.+|++.|++.++++++.+++.+
T Consensus 375 ~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (479)
T PRK10077 375 AAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMW 454 (479)
T ss_pred HHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHHHHHHHHHHHHHHHH
Confidence 44443 3367789999999999999999999999999998887663322 2445568899999998887777666644
Q ss_pred -cccCCh
Q 012002 171 -LVTDTP 176 (473)
Q Consensus 171 -~~~e~p 176 (473)
+.||++
T Consensus 455 ~~~~e~~ 461 (479)
T PRK10077 455 KFVPETK 461 (479)
T ss_pred hccccCC
Confidence 466654
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=9.6e-11 Score=110.38 Aligned_cols=177 Identities=11% Similarity=0.054 Sum_probs=125.1
Q ss_pred HHHHHHHHHhhcchhHHHHHhHHHHHHHcCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHhHHhHHHHHHHHH
Q 012002 235 VIAVALQIFQQCTGINAIMFYAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTV 314 (473)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~ 314 (473)
++...+..+.............|.+.+++|.+..+.++..+...++..++.++.|++.||+|||+.+..+..+.+++.++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l 84 (382)
T PRK10091 5 ILSLALGTFGLGMAEFGIMGVLTELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAM 84 (382)
T ss_pred HHHHHHHHHHHHhhHHHHHhChHHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHH
Confidence 55555555555555566777888888999999999999999999999999999999999999999999988888877766
Q ss_pred HHHHHhhhhccCCcccchhhHHHHHHHHHHHHHhhhccccccccccccccccccchhhhHHHHHHHHHHHHHHHHHHHHH
Q 012002 315 IAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLS 394 (473)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (473)
.... ++ .+...+.-. +.+.......+....+..|.+|+++|+++.++......++..+++++.+.
T Consensus 85 ~~~~------------~~--~~~l~~~r~-l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~ 149 (382)
T PRK10091 85 FTLS------------SS--YLMLAIGRL-VSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTY 149 (382)
T ss_pred HHHh------------Cc--HHHHHHHHH-HHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHH
Confidence 5543 11 122222222 22222122223444566788899999999999999999999999999998
Q ss_pred HhhhhhhhHHHHHHHHHHH-HHHHHHhhccCCC
Q 012002 395 MLCHFKFGIFLFFSGWVLI-MSCFVFFLLPETK 426 (473)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 426 (473)
+.+..++...+...++..+ ..+......|+.+
T Consensus 150 l~~~~gwr~~f~~~~~~~~~~~~~~~~~lp~~~ 182 (382)
T PRK10091 150 LSQEFSWRYTFLLIAVFNIAVLASIYFWVPDIR 182 (382)
T ss_pred HhhhccHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 8887777665555444333 3333444566543
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.2e-10 Score=110.56 Aligned_cols=156 Identities=9% Similarity=-0.047 Sum_probs=106.4
Q ss_pred HHHHHHHHHhhcchhHHHHHhHHHHHHHcCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHhHHhHHHHHHHHH
Q 012002 235 VIAVALQIFQQCTGINAIMFYAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTV 314 (473)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~ 314 (473)
+....+..++...+......+.+.+.+++|.++.+.+...+...++..++.++.|++.||+|||+.+..+.....++...
T Consensus 15 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~ 94 (402)
T TIGR00897 15 LLWGYIGVVVFMTGDGLEQGWLSPFLKALGLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAA 94 (402)
T ss_pred hhHHHHHHHHHHHhhhhHHHhHHHHHHHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHH
Confidence 44444444444555555566777777889999999999999999999999999999999999999999888877776554
Q ss_pred HHHHHhhhhccCCcccchhhHHHHHHHHHHHHHhhhccccccccccccccccccchhhhHHHHHHHHHHHH-HHHHHHHH
Q 012002 315 IAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFT-FVIAQAFL 393 (473)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 393 (473)
...... ...+.+.......+.+.+. ....+.......+.+|+++|++++|+.+....+|. .+++.+.+
T Consensus 95 ~~~~~~----------~~~~~~~l~~~~~i~G~g~-~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~ 163 (402)
T TIGR00897 95 FIVFGL----------GHANYPLILLFYGIRGLGY-PLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSS 163 (402)
T ss_pred HHHHhc----------cCccHHHHHHHHHHHHcch-HHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 422110 1111222222222222111 11222333445688899999999999999999886 57788888
Q ss_pred HHhhhhhh
Q 012002 394 SMLCHFKF 401 (473)
Q Consensus 394 ~~~~~~~~ 401 (473)
.+.+..++
T Consensus 164 ~l~~~~g~ 171 (402)
T TIGR00897 164 YAIPAFGE 171 (402)
T ss_pred hcccccch
Confidence 87776664
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.29 E-value=4.1e-11 Score=116.96 Aligned_cols=176 Identities=15% Similarity=0.153 Sum_probs=128.1
Q ss_pred HHHHHHHHHhhcchhHHHHHhHHHHHHHcCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHhHHhHHHHHHHHH
Q 012002 235 VIAVALQIFQQCTGINAIMFYAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTV 314 (473)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~ 314 (473)
+..+.+..+.............|.+.+++|.+..+.++..+...++..++.++.|++.||+|||+.+..+..+..++..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~ 83 (485)
T TIGR00711 4 TIVLMLGTFMAVLDSTIVNVAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLL 83 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHH
Confidence 44455555555666667777889999999999999999999999999999999999999999999999888877777665
Q ss_pred HHHHHhhhhccCCcccchhhHHHHHHHHHHHHHhhhccccccccccccccccccchhhhHHHHHHHHHHHHHHHHHHHHH
Q 012002 315 IAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLS 394 (473)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (473)
.... + +.+. +....++.+.......+....++.|.+|++.|+++.++......++..++|.+.+.
T Consensus 84 ~~~~------------~--~~~~-l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~ 148 (485)
T TIGR00711 84 CGVA------------P--NLEL-MIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGW 148 (485)
T ss_pred HhCc------------C--CHHH-HHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhH
Confidence 5432 1 1122 22222333333333445667778899999999999999999999999999999999
Q ss_pred HhhhhhhhHHHHHHHHHH-HHHHHHHhhccCC
Q 012002 395 MLCHFKFGIFLFFSGWVL-IMSCFVFFLLPET 425 (473)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 425 (473)
+.++.++...+....... +...+..+..+++
T Consensus 149 l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~ 180 (485)
T TIGR00711 149 IIENYHWRWIFLINVPIGIIVVVVAFFILPRD 180 (485)
T ss_pred hccCcCceehhhhhhHHHHHHHHHHHHHcCCc
Confidence 988877665554443333 3333344445543
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.4e-10 Score=109.56 Aligned_cols=172 Identities=12% Similarity=0.076 Sum_probs=120.4
Q ss_pred HHHHHHHHHhhcchhHHHHHhHHHHHHHcCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHhHHhHHHHHHHHH
Q 012002 235 VIAVALQIFQQCTGINAIMFYAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTV 314 (473)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~ 314 (473)
++.+.+..+....+........+.+.++++.++.+.++..+.+.+...+..++.|++.||+|||+++..+..+..++.+.
T Consensus 5 f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~ 84 (393)
T PRK11195 5 FYAIMAAQFFSALADNALLFAAIALLKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLL 84 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHH
Confidence 34444445544444444555555667788888888999999999999999999999999999999999988877776655
Q ss_pred HHHHHhhhhccCCcccchhhHHHHHHHHHHHHHhhhccccccccccccccccccchhhhHHHHHHHHHHHHHHHHHHHHH
Q 012002 315 IAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLS 394 (473)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (473)
..... . . . ..-+..+.......|...+++.|.+|+++|+++.|+......++..++|.+.|.
T Consensus 85 ~~~~~------------~--~---~-~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~ 146 (393)
T PRK11195 85 MLFGI------------H--P---L-LAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGA 146 (393)
T ss_pred HHHHH------------H--H---H-HHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 43321 1 1 1 111223333444456777888999999999999999999999999999999999
Q ss_pred HhhhhhhhHHHHHHHHHHHHHHHHHhhccCC
Q 012002 395 MLCHFKFGIFLFFSGWVLIMSCFVFFLLPET 425 (473)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (473)
+.+.. +...+...+.+.+.+.+..+.+|+.
T Consensus 147 l~~~~-~~~~~~i~~~~~~~~~~~~~~l~~~ 176 (393)
T PRK11195 147 LADPH-AEAALAVCALIYLLAALFNLFIPRL 176 (393)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 98864 3333333333333444445556654
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.2e-10 Score=110.55 Aligned_cols=175 Identities=14% Similarity=0.116 Sum_probs=127.5
Q ss_pred HHHHHHHHHhhcchhHHHHHhHHHHHH-HcCCCCcchHHHHHHHHHHHHHHHHHHHHHHhh-cCcchhHhHHhHHHHHHH
Q 012002 235 VIAVALQIFQQCTGINAIMFYAPVLFK-TLGFGGSASLYSTVITGAVNVLSTLVSIYSVDK-VGRRMLLLEAGIQMFLSQ 312 (473)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~~~~~~~~~~~~~~~~~~ 312 (473)
++..+...+.....++.+..+++.+++ ++|++..++......+.....+..+++|+++|| +|||+.+..+.++..++.
T Consensus 16 ~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~ 95 (489)
T PRK10207 16 FFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGY 95 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHH
Confidence 555566666677788888888877765 599999988888888887788888899999999 999999999999988888
Q ss_pred HHHHHHHhhhhccCCcccchhhHHHHHHHHHHHHHhhhcccccccccccccccccc--chhhhHHHHHHHHHHHHHHHHH
Q 012002 313 TVIAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLE--TRSAGQSVTVCVNLLFTFVIAQ 390 (473)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~~~~~~~~~~~~~~~~~~~ 390 (473)
+...+.. ............ .+.......|....++.|.+|++ .|+.+.++.....++|..++|.
T Consensus 96 ~~~~~~~-------------~~~~ll~~~~~l-~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~ 161 (489)
T PRK10207 96 FMTGMSL-------------LKPDLIFIALGT-IAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLS 161 (489)
T ss_pred HHHHHhc-------------cchhHHHHHHHH-HHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHH
Confidence 7766531 111111112222 23333334455567788999887 4577899999999999999999
Q ss_pred HHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhcc
Q 012002 391 AFLSMLCHFKFGIFLFFSGWVLIMSCFVFFLLP 423 (473)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (473)
+.+.+.++.+|...+....+..+.+++.+...+
T Consensus 162 l~g~l~~~~gw~~~F~i~~i~~~~~~~~~~~~~ 194 (489)
T PRK10207 162 LAPVIADKFGYSVTYNLCGAGLIIALLVYFACR 194 (489)
T ss_pred HHHHHHHhhChHHHHHHHHHHHHHHHHHHHHcc
Confidence 999999988887766666555555555544443
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.5e-10 Score=107.99 Aligned_cols=169 Identities=12% Similarity=0.086 Sum_probs=116.7
Q ss_pred HHHHhhcchhHHHHHhHHHHH-HHcCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHhHHhHHHHHHHHHHHHH
Q 012002 240 LQIFQQCTGINAIMFYAPVLF-KTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAII 318 (473)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (473)
...++...+.+....+.+.++ ++.|++..+.|...+...+...+..++.|+++||+|||+.+..+.....++.+.....
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~ 96 (400)
T PRK11646 17 IDNMLVVLGFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIA 96 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHh
Confidence 333344444555555666554 5689999999999999999999999999999999999999998888888777666542
Q ss_pred HhhhhccCCcccchhhHHHHHHHHHHHHHhhhccccccccccccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 012002 319 LGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCH 398 (473)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (473)
+ ..+....... ..+.......+...+++.|.+|+++|+++.|+.+....++..++|.+.+.+. .
T Consensus 97 ------------~--~~~~l~~~~~-l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~ 160 (400)
T PRK11646 97 ------------H--EPWLLWLSCI-LSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL-Q 160 (400)
T ss_pred ------------c--cHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence 1 1222222222 2222222233445566789999999999999999999999999999999988 5
Q ss_pred hhhhHHHHHHHHHHH-HHHHHHhhccC
Q 012002 399 FKFGIFLFFSGWVLI-MSCFVFFLLPE 424 (473)
Q Consensus 399 ~~~~~~~~~~~~~~~-~~~~~~~~~~~ 424 (473)
.++...+.+.++..+ .+++..+..|+
T Consensus 161 ~g~~~~f~~~~~~~~~~~i~~~~~~~~ 187 (400)
T PRK11646 161 YDFRLVCATGAVLFVLAAAFNAWLLPA 187 (400)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 566555544444333 33333444454
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=3.2e-10 Score=109.78 Aligned_cols=173 Identities=12% Similarity=-0.009 Sum_probs=109.6
Q ss_pred HHHHHHHHHhhcchhHHHHHhHHHHHHHcCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHhHHhHHHHHHHHH
Q 012002 235 VIAVALQIFQQCTGINAIMFYAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTV 314 (473)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~ 314 (473)
+.......++..........+.|.+.+++|++..+.+...+...++..++.++.|+++||+|||+.+..+.+...++.++
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~ 117 (476)
T PLN00028 38 FHLSWISFFTCFVSTFAAAPLLPIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFC 117 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHH
Confidence 33333344444444455666677888889999999998888888999999999999999999999988877776666555
Q ss_pred HHHHHhhhhccCCcccchhhHHHHHHHHHHHHHhhhccccccccccccccccccchhhhHHHHHHHHHHHHHHHHHHHHH
Q 012002 315 IAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLS 394 (473)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (473)
.... .+ .+...+..++.+ .......+ ...++.|.+|++.|+++.|+.+....+|+.+++.+.+.
T Consensus 118 ~~~~------------~s--~~~l~~~r~l~G-~~~~~~~~-~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~ 181 (476)
T PLN00028 118 MSLV------------SS--ATGFIAVRFFIG-FSLATFVS-CQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPL 181 (476)
T ss_pred HHHh------------cC--HHHHHHHHHHHH-HHHHhhHH-HHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4442 11 111111112222 11222222 23456799999999999999988888887777666654
Q ss_pred Hhh----h-----hhhhHHHHHHHHHHHHHHHHHhhcc
Q 012002 395 MLC----H-----FKFGIFLFFSGWVLIMSCFVFFLLP 423 (473)
Q Consensus 395 ~~~----~-----~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (473)
+.. . .+|...+.+.++..+...+..++++
T Consensus 182 i~~~~~~~~~~~~~gWr~~f~i~g~l~l~~~l~~~~~~ 219 (476)
T PLN00028 182 VFPLIKDAGAPSFTAWRIAFFVPGLLHIIMGILVLTLG 219 (476)
T ss_pred HHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHc
Confidence 432 1 2555555544444433333333333
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.2e-10 Score=108.59 Aligned_cols=177 Identities=14% Similarity=0.043 Sum_probs=118.8
Q ss_pred HHHHHHHHHhhcchhHHHHHhHHHHHHHcCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHhHHhHHHHHHHHH
Q 012002 235 VIAVALQIFQQCTGINAIMFYAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTV 314 (473)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~ 314 (473)
.+.......+............|.+.+++|.++.+.+...+...++..++.++.|+++||+|||+.+..+.....++.+.
T Consensus 10 l~~~~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~ 89 (394)
T PRK11652 10 LFMLVLLVAVGQMAQTIYVPAIADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLV 89 (394)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHH
Confidence 44444444444444445555677888889999999999999999999999999999999999999998887776666655
Q ss_pred HHHHHhhhhccCCcccchhhHHHHHHHHHHHHHhhhccccccccccccccccccchhhhHHHHHHHHHHHHHHHHHHHHH
Q 012002 315 IAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLS 394 (473)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (473)
.... + ..+..... .++.+.......+....+..|.++.+.++.+.+..+....++..++|.+.+.
T Consensus 90 ~~~~------------~--~~~~l~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~ 154 (394)
T PRK11652 90 ALFA------------H--SLTVLIAA-SAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGL 154 (394)
T ss_pred HHHH------------c--cHHHHHHH-HHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4432 1 11111111 1222221112223444556788888889999999999999999999999998
Q ss_pred HhhhhhhhHHHHHHHHH-HHHHHHHHhhccCCC
Q 012002 395 MLCHFKFGIFLFFSGWV-LIMSCFVFFLLPETK 426 (473)
Q Consensus 395 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 426 (473)
+.+..++...+.+.++. .+...+..++.||++
T Consensus 155 l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~ 187 (394)
T PRK11652 155 LTTLFGWRACYLFLLLLGAGVTFSMARWMPETR 187 (394)
T ss_pred HHhccChHHHHHHHHHHHHHHHHHHHHhCCccC
Confidence 88877776555544433 333344445566643
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.26 E-value=5.1e-11 Score=114.33 Aligned_cols=179 Identities=12% Similarity=0.068 Sum_probs=114.7
Q ss_pred HHHHHHHHHhhcchhHHHHHhHHHHHHHcCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHhHHhHHHHHHHHH
Q 012002 235 VIAVALQIFQQCTGINAIMFYAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTV 314 (473)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~ 314 (473)
++...+...........+....|.+.+ .|+++.+.++..+...++..++.++.|+++||+|||+.+..+.++.+++.+.
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~p~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~ 107 (438)
T TIGR00712 29 FLGIFFGYAAYYLVRKNFALAMPYLVE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVMLL 107 (438)
T ss_pred HHHHHHHHHHHHHHhccHHhhhHHHHH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHHHHH
Confidence 444444444444333444556676654 6999999999999999999999999999999999999888877776666655
Q ss_pred HHHHHhhhhccCCcccchhhHHHHHHHHHHHHHhhhccccccccccccccccccchhhhHHHHHHHHHHHHHHHHHHHHH
Q 012002 315 IAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLS 394 (473)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (473)
...... .....+.......+...+.+. ..+.....+.|.+|+++|++++|+.+....+++.+++.+.+.
T Consensus 108 ~~~~~~----------~~~~~~~l~~~~~l~g~~~g~-~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~ 176 (438)
T TIGR00712 108 MGFVPW----------ATSSIAIMFVLLFLNGWFQGM-GWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLL 176 (438)
T ss_pred Hhcccc----------ccchHHHHHHHHHHHHHHhhc-chHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHH
Confidence 443210 001111112222222222222 223334556789999999999999999999999999888776
Q ss_pred Hhh-hhhhhHHHHHHHH-HHHHHHHHHhhccCC
Q 012002 395 MLC-HFKFGIFLFFSGW-VLIMSCFVFFLLPET 425 (473)
Q Consensus 395 ~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 425 (473)
..+ ..+|...+...++ ..+..++..++.+|+
T Consensus 177 ~~~~~~~w~~~f~~~~~~~~i~~~~~~~~~~~~ 209 (438)
T TIGR00712 177 GMAWFNDWHAALYFPAICAIIVALFAFAMMRDT 209 (438)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 554 3456555554443 344444555555553
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.4e-10 Score=111.75 Aligned_cols=162 Identities=14% Similarity=0.078 Sum_probs=104.2
Q ss_pred HHHhHHHHHHHcCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHhHHhHHHHHHHHHHHHHHhhhhccCCcccc
Q 012002 252 IMFYAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKDHSEDLH 331 (473)
Q Consensus 252 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (473)
+....|++.++ |++..+.+...+...++..++.++.|+++||+|||+.+..+.++..++.+...+... .
T Consensus 48 ~~~~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~~~----------~ 116 (452)
T PRK11273 48 FALAMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPW----------A 116 (452)
T ss_pred HHHhhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHHhhhc----------c
Confidence 45567777766 999999999999999999999999999999999999999888877777766554310 0
Q ss_pred hhhHHHHHHHHHHHHHhhhccccccccccccccccccchhhhHHHHHHHHHHHHHHHHHHHH-HHhhhhhhhHHHHH-HH
Q 012002 332 TGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFL-SMLCHFKFGIFLFF-SG 409 (473)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~ 409 (473)
....+.......+...+.+ ...+.......|.+|++.|++++|+.+....+|+.+.+++.+ .+....+|...+.+ +.
T Consensus 117 ~~~~~~~~~~~~l~gi~~g-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~gw~~~f~i~~~ 195 (452)
T PRK11273 117 TSSIAVMFVLLFLCGWFQG-MGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFNDWHAALYMPAF 195 (452)
T ss_pred cccHHHHHHHHHHHHHHHh-ccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 1111222222222222222 222333345578899999999999999988888755444432 22222344444444 33
Q ss_pred HHHHHHHHHHhhccCC
Q 012002 410 WVLIMSCFVFFLLPET 425 (473)
Q Consensus 410 ~~~~~~~~~~~~~~~~ 425 (473)
+..+..++..++.+++
T Consensus 196 ~~~~~~~l~~~~~~~~ 211 (452)
T PRK11273 196 AAILVALFAFAMMRDT 211 (452)
T ss_pred HHHHHHHHHHHHccCC
Confidence 3444445555566654
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.4e-10 Score=111.35 Aligned_cols=177 Identities=19% Similarity=0.101 Sum_probs=126.2
Q ss_pred HHHHHHHHHHhhcchhHHHHHhHHHHHHHcCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHhHHhHHHHHHHH
Q 012002 234 LVIAVALQIFQQCTGINAIMFYAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQT 313 (473)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~ 313 (473)
.+...++..+....-......-.|.+.+++|.+..+.++..+.+.++...+.+..|+++||+|||+.+..+.....++.+
T Consensus 7 ~~~~~~~~~~~~~ld~tiv~~a~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~~~~ 86 (495)
T PRK14995 7 TLVIIVLVYIPVAIDATVLHVAAPTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGLASL 86 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 45556666666666667778888999999999999999999999999999999999999999999999999888888777
Q ss_pred HHHHHHhhhhccCCcccchhhHHHHHHHHHHHHHhhhccccccccccccccc-cccchhhhHHHHHHHHHHHHHHHHHHH
Q 012002 314 VIAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETF-PLETRSAGQSVTVCVNLLFTFVIAQAF 392 (473)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (473)
+.... + +.+..+..-.+.+ .......+.......+.+ |+++|+++.|+......+|..++|.+.
T Consensus 87 ~~~~a------------~--~~~~li~~r~l~G-~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lg 151 (495)
T PRK14995 87 AAAFS------------P--TASWLIATRALLA-IGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVG 151 (495)
T ss_pred HHHHc------------C--CHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 76653 1 1222222222222 222222233333334544 778999999999999999999999999
Q ss_pred HHHhhhhhhhHHHHHHHH-HHHHHHHHHhhccCC
Q 012002 393 LSMLCHFKFGIFLFFSGW-VLIMSCFVFFLLPET 425 (473)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 425 (473)
+.+.++.+|...+..... ..+...+..+.+|+.
T Consensus 152 g~l~~~~gwr~~f~i~~~~~~~~~~l~~~~l~~~ 185 (495)
T PRK14995 152 GILLEHFYWGSVFLINVPIVLVVMGLTARYVPRQ 185 (495)
T ss_pred HHhhccCChHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 999998887665555443 333334444555553
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=99.25 E-value=6.1e-11 Score=115.56 Aligned_cols=163 Identities=15% Similarity=0.016 Sum_probs=113.0
Q ss_pred HHHHhHHHHHHHcCCC--------CcchHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHhHHhHHHHHHHHHHHHHHhhh
Q 012002 251 AIMFYAPVLFKTLGFG--------GSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIK 322 (473)
Q Consensus 251 ~~~~~~~~~~~~~g~~--------~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (473)
.+....+....+.+++ ..+.++..+...++..++.++.|+++||+|||+.+..+..+..++..+.....
T Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~--- 122 (481)
T TIGR00879 46 VIGGALALPAFEFKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAA--- 122 (481)
T ss_pred hhhhhhhcHHHHHhcCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhc---
Confidence 3444455555555555 78899999999999999999999999999999999988887777766664431
Q ss_pred hccCCcccchhhHHHHHHHHHHHHHhhhccccccccccccccccccchhhhHHHHHHHHHHHHHHHHHHH---HHHhhhh
Q 012002 323 VKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAF---LSMLCHF 399 (473)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 399 (473)
.....+..++...+.+ .......+....++.|.+|+++|+++.++.+....+|..+++.+. +...+..
T Consensus 123 --------~~~~~~~~~~~r~l~G-~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~ 193 (481)
T TIGR00879 123 --------FALSVEMLIVGRVLLG-IGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLNNTL 193 (481)
T ss_pred --------cccchHHHHHHHHHHH-hhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCc
Confidence 1111112222222222 222233345667788999999999999999999999999999988 5544555
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhccCC
Q 012002 400 KFGIFLFFSGWVLIMSCFVFFLLPET 425 (473)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (473)
++...+.+.++..+..++..++++|+
T Consensus 194 ~w~~~f~~~~~~~~~~~~~~~~l~~~ 219 (481)
T TIGR00879 194 GWRIPLGLQLIPAGLLFLGLFFLPES 219 (481)
T ss_pred cHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 66666666555555555556666664
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=4.2e-10 Score=106.93 Aligned_cols=155 Identities=14% Similarity=0.010 Sum_probs=107.0
Q ss_pred hHHHHHHHcCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHhHHhHHHHHHHHHHHHHHhhhhccCCcccchhh
Q 012002 255 YAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKDHSEDLHTGF 334 (473)
Q Consensus 255 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (473)
..|.+.+++|.++.+.+...+...++..++.++.|+++||+|||+.+..+..+..++....... ++
T Consensus 28 ~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~------------~~-- 93 (401)
T PRK11043 28 AFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWV------------ES-- 93 (401)
T ss_pred hHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHh------------cC--
Confidence 3344567799999999999999999999999999999999999999988877766665555432 11
Q ss_pred HHHHHHHHHHHHHhhhccccccccccccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHH
Q 012002 335 AVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHFKFGIFLFFSGWVLIM 414 (473)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (473)
.+...+...+.+ .......+....+..|.+|++.++...+..+....++..++|.+.+.+.+..++...+....+..+.
T Consensus 94 ~~~l~~~~~l~G-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~ 172 (401)
T PRK11043 94 AAQLLVLRFVQA-VGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATLFAITLL 172 (401)
T ss_pred HHHHHHHHHHHH-hhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 111122112211 1111112233456678899988888889888888899999999999998888876655554444444
Q ss_pred HHHHHhhccC
Q 012002 415 SCFVFFLLPE 424 (473)
Q Consensus 415 ~~~~~~~~~~ 424 (473)
..+..+..++
T Consensus 173 ~~~~~~~~~~ 182 (401)
T PRK11043 173 LILPTLRLKP 182 (401)
T ss_pred HHHHHHHcCC
Confidence 4444444444
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.1e-10 Score=106.72 Aligned_cols=163 Identities=9% Similarity=-0.092 Sum_probs=111.0
Q ss_pred hhHHHHHhHHHHHHHcCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHhHHhHHHHHHHHHHHHHHhhhhccCC
Q 012002 248 GINAIMFYAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKDHS 327 (473)
Q Consensus 248 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (473)
....+....|.+.+++|.+..+.++..+...++..++.+..|+++||+|||+.+.........+. .....
T Consensus 6 ~~~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~-~~~~~--------- 75 (368)
T TIGR00903 6 IWVTFSPVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAA-GRLLD--------- 75 (368)
T ss_pred HHHHHHhhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHH-HHHHH---------
Confidence 34456667888888999999999999999999999999999999999998887654433332221 11111
Q ss_pred cccchhhHHHHHHHHHHHHHhhhccccccccccccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHH
Q 012002 328 EDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHFKFGIFLFF 407 (473)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (473)
.. .....+..-.+.+.+.. . .+......+|.+|+++|+++.++.+....+|..+++.+.+.+.++.+|...+..
T Consensus 76 ---~~-~~~~l~~~R~l~G~g~~-~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~ 149 (368)
T TIGR00903 76 ---PF-NYEWLLACQLLAALGQP-F-LLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIP 149 (368)
T ss_pred ---hc-cHHHHHHHHHHHHhHhH-H-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHH
Confidence 01 11122222222222211 1 122334447889999999999999999999999999999999888888766655
Q ss_pred -HHHHHHHHHHHHhhccCCC
Q 012002 408 -SGWVLIMSCFVFFLLPETK 426 (473)
Q Consensus 408 -~~~~~~~~~~~~~~~~~~~ 426 (473)
+++..+..++.++++||.+
T Consensus 150 ~~~l~~~~~~~~~~~lp~~p 169 (368)
T TIGR00903 150 IAAVAAAGIILVLAALPALP 169 (368)
T ss_pred HHHHHHHHHHHHHHHcCCCC
Confidence 4444455555666677643
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.24 E-value=6.9e-09 Score=96.34 Aligned_cols=325 Identities=13% Similarity=0.076 Sum_probs=180.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhhhhhhHHHhhcCCCC
Q 012002 36 TSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVAAQNLAMLIVGRILLGCGVGFANQAVPLFLSEIAPTR 115 (473)
Q Consensus 36 ~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~l~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~ 115 (473)
.++-+..+.+.+++.+.+.|+.|.|..++++...+....+..-+ .|-+.++++-.+.|+|.+..+..--.+++|..+++
T Consensus 56 ~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~-~N~y~~yfssallG~Gaallw~GqG~ylt~~st~~ 134 (461)
T KOG3098|consen 56 QAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLF-PNSYYLYFSSALLGFGAALLWTGQGGYLTSNSTRE 134 (461)
T ss_pred HHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHh-cchHHHHHHHHHhhhhHHheecccceehhhcCChh
Confidence 77888888999999999999999999999999999887776655 45677888999999999999999999999999999
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHhhhccccCC-----ccchH--------------HHHHhhhHHHHHHHHHhhcccCCh
Q 012002 116 IRGGLNILFQLNVTIGILFANLVNYGTSHIKS-----QWGWR--------------ISLGLAGIPAALLTVGSLLVTDTP 176 (473)
Q Consensus 116 ~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~-----~~~wr--------------~~f~~~~~~~~~~~~~~~~~~e~p 176 (473)
.+.+..++.......+.++|..+-.......+ ..+-+ ..+.+...+..+..+...+.|.+.
T Consensus 135 tie~Nisi~Wai~~~~li~Ggi~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~~~~~l~~i~~~~~p~~~ 214 (461)
T KOG3098|consen 135 TIERNISIFWAIGQSSLIIGGIILFIYFQFSSSSAIITDGTRRLVFEVLFIDFEIKVLFGVLLAISVLSIINFDFLPSKD 214 (461)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHhheeeeEecccccccccchhhhhcchhhhhHHHHHHHHHHHHHHHHHhhheeecCccc
Confidence 99999999988888888888766333322221 11121 111111111111122222233211
Q ss_pred hhHHhhCChHHHHHHHHHHhCCCCchHHHHHHHHHHhhhhhcccchHHhhcccCchhHHHHHHHHHHhhcchhHHHHHhH
Q 012002 177 NSLIERGRFEEGKAVLRKIRGTDKIEPEFLELVEASRIAKEVKHPFRNLLKRRNRPQLVIAVALQIFQQCTGINAIMFYA 256 (473)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (473)
. . .+ . +.. +.......+..+|....++ .+.+...++.............
T Consensus 215 ~-~------~~--------------------~--~~~-~~~~~~~l~~~~~l~~~~~-ml~L~~~f~~tG~~~Sf~~~iy 263 (461)
T KOG3098|consen 215 V-V------NC--------------------K--SSS-ETSFSELLKLTFKLLKTPK-MLLLFPFFFYTGLETSFWISIY 263 (461)
T ss_pred h-h------hh--------------------h--hhc-cccHHHHHHHHHHHhcCHh-HHHHHHHHHHHHHHHHHHHhcc
Confidence 0 0 00 0 000 0011122233333333333 3333222222222222222222
Q ss_pred HHHH--H-HcCCCC-cchHHHHHHHHHHHHHHHHHHHHHHhh---cCcchhHhHHhHHHHHHHHHHHHHHhhhh--cc-C
Q 012002 257 PVLF--K-TLGFGG-SASLYSTVITGAVNVLSTLVSIYSVDK---VGRRMLLLEAGIQMFLSQTVIAIILGIKV--KD-H 326 (473)
Q Consensus 257 ~~~~--~-~~g~~~-~~~~~~~~~~~~~~~~~~~~~g~l~d~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~ 326 (473)
|..+ . ..+.+. ...+......+++.+++....+.+.+| +||++.+.++..+..+..++.......-. .. +
T Consensus 264 pt~i~ft~~~~~n~~~~~ai~~~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~ 343 (461)
T KOG3098|consen 264 PTCISFTRKLGSNTTYLIAIYSIGIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTD 343 (461)
T ss_pred chhhhhhhhccCcchhHHHHHHHHHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCCc
Confidence 3222 1 222222 223444555667777777777777765 57778777776665555544443321101 00 0
Q ss_pred CcccchhhHHHHHHHHHHHHHhhhccccccccccccccccccchhhhHHHHHHHHHHHHHHHHHHHH
Q 012002 327 SEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFL 393 (473)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (473)
..+............+.+..+..-..+....+.++..++ ++.|..+.++...-..+...++-....
T Consensus 344 ~~~~~~~~~~~~~~ii~~l~G~~D~~~~t~~~~ii~~~~-~~~~~~~fsi~kfyq~~~s~v~~f~~~ 409 (461)
T KOG3098|consen 344 SPPLLFTPSYYLALIIGFLLGFGDACFNTQRYVIIALLY-PDDRAQAFSLFKFYQSVASCVAFFFSP 409 (461)
T ss_pred ccccccccchhHHHHHHHHHhhHHHHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHHhhhhh
Confidence 001111112333333444444444455556667777777 566777877777777666655444443
|
|
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=99.24 E-value=7.2e-11 Score=101.17 Aligned_cols=158 Identities=16% Similarity=0.125 Sum_probs=124.8
Q ss_pred hccccCCCCCcccCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHh-------hhHHHH
Q 012002 14 RRTQQGDDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVAA-------QNLAML 86 (473)
Q Consensus 14 ~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~l~~i~~~~~~~~-------~~~~~l 86 (473)
.+.+.|++++.+|+|.+|...+.+...+|..+| ++.|.+.|++|+|.++.+|.+...+|..+...+ .++|.+
T Consensus 21 Fs~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~G-~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i~~~~~~~~ 99 (250)
T PF06813_consen 21 FSAYSPQLKSRLGYSQSQLNTLSTAGDIGSYFG-ILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRIPSLPVWLM 99 (250)
T ss_pred hhhhhHHHHHHhCCCHHHHHHHHHHHHHHhhcc-HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCccCccchHHH
Confidence 355678899999999999999999999999874 889999999999999999999999999888765 467888
Q ss_pred HHHHHHHhhhhhhhhhhhhHHHhhcCCCCCchhhHHHHHHHHHHHHHHHHHHhhhccccCCccchHHHHHhhhHHHHHHH
Q 012002 87 IVGRILLGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLT 166 (473)
Q Consensus 87 ~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~ 166 (473)
.+..++.|.+.+....++.....+.|| ++||++.++.-...+++..+-..+ ...+.+...-+..+.+...+.++.+
T Consensus 100 ~~~~~l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i---~~~~f~~~~~~fll~la~~~~~v~l 175 (250)
T PF06813_consen 100 CLFLFLGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQI---YSAFFGDDPSSFLLFLAVLPAVVCL 175 (250)
T ss_pred HHHHHHHcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHH---HHHHcCCChHHHHHHHHHHHHHHHH
Confidence 888899999988887888888888897 579999999999999988887766 3333332334445555555555555
Q ss_pred HHhhcccCCh
Q 012002 167 VGSLLVTDTP 176 (473)
Q Consensus 167 ~~~~~~~e~p 176 (473)
+..+++++.|
T Consensus 176 ~~~~~vr~~~ 185 (250)
T PF06813_consen 176 VAMFFVRPVP 185 (250)
T ss_pred HHhhheeccC
Confidence 5555555444
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.9e-10 Score=111.09 Aligned_cols=153 Identities=17% Similarity=0.122 Sum_probs=104.0
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHhHHhHHHHHHHHHHHHHHhhhhccCCcccchhhHHHHHHHHHHH
Q 012002 266 GGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKDHSEDLHTGFAVLVVIMICTF 345 (473)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (473)
+..+.+.+.+...++.+++.++.|++.||+|||+.+..+.++..++.++...... . ........+...-+.
T Consensus 54 ~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~~~~~~~v~~~~~~~~~~------~---~~~~~~~~~~~~r~l 124 (502)
T TIGR00887 54 PSSVSAAVNGSASIGTLAGQLFFGWLADKLGRKRVYGMELIIMIIATVASGLSPG------S---SPKSVMATLCFWRFW 124 (502)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHccC------c---ccchHHHHHHHHHHH
Confidence 3445678888899999999999999999999999998887777777655544210 0 000011122222222
Q ss_pred HHhhhccccccccccccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHhh-----------------------hhhhh
Q 012002 346 ISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLC-----------------------HFKFG 402 (473)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~ 402 (473)
.+.......+....+..|.+|++.|+++.++.+....+|..+++.+...+.. ..+|.
T Consensus 125 ~G~~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR 204 (502)
T TIGR00887 125 LGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWR 204 (502)
T ss_pred HHHHHhhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHH
Confidence 3333333345667888999999999999999999999988888877665432 12466
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCCC
Q 012002 403 IFLFFSGWVLIMSCFVFFLLPETKN 427 (473)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (473)
..+.+.++..+...+..+++||+.+
T Consensus 205 ~~~~~~~ip~~i~~~~~~~lpESpr 229 (502)
T TIGR00887 205 ILIGFGAVPALLALYFRLTIPETPR 229 (502)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCHH
Confidence 6666666666666666677888643
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=3.2e-10 Score=107.77 Aligned_cols=157 Identities=11% Similarity=0.098 Sum_probs=110.3
Q ss_pred hHHHHHHHcCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHhHHhHHHHHHHHHHHHHHhhhhccCCcccchhh
Q 012002 255 YAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKDHSEDLHTGF 334 (473)
Q Consensus 255 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (473)
-.|.+.++++.+....+...+.+.++..++.++.|+++||+|||+.+..+..+..++....... + .
T Consensus 38 ~l~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a------------~-~- 103 (413)
T PRK15403 38 GIINVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLFT------------T-S- 103 (413)
T ss_pred CHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHHc------------C-C-
Confidence 3445667799999999999999999999999999999999999999998877776666555442 1 1
Q ss_pred HHHHHHHHHHHHHhhhccccccccccccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHH
Q 012002 335 AVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHFKFGIFLFFSGWVLIM 414 (473)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (473)
.+..+..-.+.+.+. ....+....+..|.+|++.+++++++.+....++..++|.+.+.+.+..++...+...++..+.
T Consensus 104 ~~~l~~~r~l~Gi~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~~~~~~i 182 (413)
T PRK15403 104 MTQFLIARFIQGTSI-CFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAIIAVMGLI 182 (413)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 111222212211111 1122344566789999999999999999999999999999998888877776666555544444
Q ss_pred HHH-HHhhccCCC
Q 012002 415 SCF-VFFLLPETK 426 (473)
Q Consensus 415 ~~~-~~~~~~~~~ 426 (473)
+.+ ..+.+||++
T Consensus 183 ~~~~~~~~lp~~~ 195 (413)
T PRK15403 183 AFVGLLLAMPETV 195 (413)
T ss_pred HHHHHHHhCCCCc
Confidence 433 344567654
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=4.8e-10 Score=106.69 Aligned_cols=164 Identities=13% Similarity=0.066 Sum_probs=112.6
Q ss_pred hhHHHHHhHHHHHHHcCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHhHHhHHHHHHHHHHHHHHhhhhccCC
Q 012002 248 GINAIMFYAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKDHS 327 (473)
Q Consensus 248 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (473)
....+....|.+.+++|.+..+.+...+...++..++.++.|+++||+|||+.+..+.....++.......
T Consensus 28 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~--------- 98 (406)
T PRK15402 28 ANDMIQPGMLAVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFILTCLAILLA--------- 98 (406)
T ss_pred hhhhHhcchHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHH---------
Confidence 34444455667778899999999999999999999999999999999999999988877777766655442
Q ss_pred cccchhhHHHHHHHHHHHHHhhhccccccccccccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHH
Q 012002 328 EDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHFKFGIFLFF 407 (473)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (473)
++ .+..... .+..+.......+.......|.+|++.|.++.++......++..++|.+.+.+.+..++...+.+
T Consensus 99 ---~~--~~~l~~~-~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~~ 172 (406)
T PRK15402 99 ---QS--IEQFTLL-RFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVLPWRGMFVL 172 (406)
T ss_pred ---cc--HHHHHHH-HHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccHHHHH
Confidence 11 1112222 12212212222234556678999999999999998888888889999999988887776655554
Q ss_pred HHHHHHH-HHHHHhhccCCC
Q 012002 408 SGWVLIM-SCFVFFLLPETK 426 (473)
Q Consensus 408 ~~~~~~~-~~~~~~~~~~~~ 426 (473)
.++..+. .....+..||++
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~ 192 (406)
T PRK15402 173 FAALAALSFFGLWRAMPETA 192 (406)
T ss_pred HHHHHHHHHHHHHHhCCCCC
Confidence 4444333 333344456543
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.3e-09 Score=105.84 Aligned_cols=151 Identities=15% Similarity=0.113 Sum_probs=117.9
Q ss_pred CCCcccCCCchhHHHHH-HHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHH---HHh-hhHHHHHHHHHHHhh
Q 012002 21 DSNYCKYDNQGLQLFTS-SLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFN---VAA-QNLAMLIVGRILLGC 95 (473)
Q Consensus 21 ~~~~~~~s~~~~~~~~s-~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~l~~i~~~~~---~~~-~~~~~l~~~r~l~G~ 95 (473)
+.+++|++..+.+++.. ...++..++.+++|+++||+|+|+.+.++.++.+++.+.. +.. ++.+.+.+.-+++.+
T Consensus 249 l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~~~~~~~l~~~~~l~~~ 328 (491)
T PRK11010 249 LIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSITDKNLYSMGAAVFFENL 328 (491)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 34567999999999984 6668999999999999999999998877666655544332 232 355555556677666
Q ss_pred hhhhhhhhhhHHHhhcCCCCCchhhHHHHHHHHHHHHHHHHHHhhhccccCCccchHHHHHhhhHHHHHHHHHhhcccC
Q 012002 96 GVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVGSLLVTD 174 (473)
Q Consensus 96 ~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e 174 (473)
+.|...+...++..+..+++.+++..++.+...++|..+++.+ .+.+.+..||+..|.+.++.+++..++..++++
T Consensus 329 ~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~---~G~l~~~~G~~~~f~~~~~~~l~~l~~~~~~~~ 404 (491)
T PRK11010 329 CGGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPV---AGWFVEAHGWPTFYLFSVAAAVPGLLLLLVCRQ 404 (491)
T ss_pred HHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6666677778889999999999999999999999999888877 555666679999999988888887776655554
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.3e-10 Score=109.66 Aligned_cols=153 Identities=9% Similarity=-0.012 Sum_probs=110.5
Q ss_pred CCcccCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHH---h-hhHHHHHHHHHHHhhhh
Q 012002 22 SNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVA---A-QNLAMLIVGRILLGCGV 97 (473)
Q Consensus 22 ~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~l~~i~~~~~~~---~-~~~~~l~~~r~l~G~~~ 97 (473)
++++|.+......+.....+...++.+++|+++||+|||++++.+.++..++.+.... . ++.+.+++..++.|++.
T Consensus 278 ~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 357 (438)
T PRK09952 278 TQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEAQSIFWIVFFSIMLANIAH 357 (438)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 4456777776666666667777888999999999999999998887766655443332 1 23445555667778888
Q ss_pred hhhhhhhhHHHhhcCCCCCchhhHHHHH-HHHHHHHHHHHHHhhhccccCCccchHHHHHhhhHHHHHHHHHhhcccCC
Q 012002 98 GFANQAVPLFLSEIAPTRIRGGLNILFQ-LNVTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVGSLLVTDT 175 (473)
Q Consensus 98 ~~~~~~~~~~i~~~~~~~~r~~~~~~~~-~~~~lG~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~ 175 (473)
+...+...+++.|.+|.+.|+...++.+ .+..+|..++|.+........ ..+|+..+...++..++..+..+.++|+
T Consensus 358 ~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~-~~~~~~~~~~~~~~~~i~~v~~~~~~~~ 435 (438)
T PRK09952 358 DMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYF-GGSWHSVAIYLLAGCLISAMTALLMKDN 435 (438)
T ss_pred HHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhc-CCCchHHHHHHHHHHHHHHHHHHHcccc
Confidence 8888889999999999999988888854 445588888998843332211 2358888888877777776666666664
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=99.21 E-value=9.8e-11 Score=113.48 Aligned_cols=145 Identities=12% Similarity=-0.010 Sum_probs=107.2
Q ss_pred HcCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHhHHhHHHHHHHHHHHHHHhhhhccCCcccchhhHHHHHHH
Q 012002 262 TLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKDHSEDLHTGFAVLVVIM 341 (473)
Q Consensus 262 ~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (473)
+++++..+.+.+.+.+.++..++.++.|++.||+|||+.+..+.++..++.++..... . .....++.
T Consensus 70 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~-----------~--~~~~~l~~ 136 (465)
T TIGR00894 70 NFKWSGALQGLILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAA-----------G--GGIALVVF 136 (465)
T ss_pred CCCCCHHHhhHHHHHHHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHH-----------H--cCchHHHH
Confidence 4678888899999999999999999999999999999999988777666665544321 0 11122333
Q ss_pred HHHHHHhhhccccccccccccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhh-hhhHHHHHHHHHHHHHHHHH
Q 012002 342 ICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHF-KFGIFLFFSGWVLIMSCFVF 419 (473)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 419 (473)
.-++.+.......+....+.+|.+|+++|+++.|+.+....+|..+++.+.+.+.+.. ++...+.+.++..+...+.+
T Consensus 137 ~r~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~ 215 (465)
T TIGR00894 137 CRVIQGLAQGSVSPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLW 215 (465)
T ss_pred HHHHHHHhcccchhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHH
Confidence 3334444444555666778899999999999999999999999999999999998874 76655555444444433333
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.21 E-value=7.6e-10 Score=103.81 Aligned_cols=148 Identities=10% Similarity=-0.010 Sum_probs=106.2
Q ss_pred HHHHHHHHHhhcchhHHHHHhHHH-HHHHcCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHhHHhHHHHHHHH
Q 012002 235 VIAVALQIFQQCTGINAIMFYAPV-LFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQT 313 (473)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~ 313 (473)
++...+..+...........+.|. +.+++|++..+.++..+...++..++.++.|+++||+|||+.+..+.+...++.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~ 82 (366)
T TIGR00886 3 LFFSWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCL 82 (366)
T ss_pred hHHHHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHH
Confidence 344555555556666777788885 5577999999999999999999999999999999999999999998888887776
Q ss_pred HHHHHHhhhhccCCcccchhhHHHHHHHHHHHHHhhhccccccccccccccccccchhhhHHHHHHHHHHHHHHHHHHHH
Q 012002 314 VIAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFL 393 (473)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (473)
...... . ..+.......+.+ ...... +....++.|.+|+++|+++.++......+|..+++.+.+
T Consensus 83 ~~~~~~------------~-~~~~~~~~~~~~g-~~~~~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~ 147 (366)
T TIGR00886 83 WAGLAV------------Q-SYSVLLLLRLFIG-IAGGSF-ASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMP 147 (366)
T ss_pred HHHHHh------------h-hHHHHHHHHHHHH-Hhchhh-HhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHH
Confidence 665431 0 1122222222222 222222 334566789999999999999999888888777777766
Q ss_pred HHhh
Q 012002 394 SMLC 397 (473)
Q Consensus 394 ~~~~ 397 (473)
.+..
T Consensus 148 ~l~~ 151 (366)
T TIGR00886 148 PIIG 151 (366)
T ss_pred HHHH
Confidence 5554
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.20 E-value=8.9e-11 Score=111.27 Aligned_cols=139 Identities=16% Similarity=0.119 Sum_probs=109.2
Q ss_pred CCcccCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHH--HHHHH--hhhHHHHHHHHHHHhhhh
Q 012002 22 SNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGV--AFNVA--AQNLAMLIVGRILLGCGV 97 (473)
Q Consensus 22 ~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~l~~i~~--~~~~~--~~~~~~l~~~r~l~G~~~ 97 (473)
++++|.+..+.+++.+...++..++.++.|+++||+|||+.+..+..+..+.. +...+ .++.+.+.+..++.|++.
T Consensus 247 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 326 (394)
T TIGR00883 247 TQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALLDSGSFTLFFFLVLGLALIG 326 (394)
T ss_pred HHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH
Confidence 35668899999999999999999999999999999999998876555544433 22222 246677778889999999
Q ss_pred hhhhhhhhHHHhhcCCCCCchhhHHH-HHHHHHHHHHHHHHHhhhccccCCccc-hHHHHHhhhHHHH
Q 012002 98 GFANQAVPLFLSEIAPTRIRGGLNIL-FQLNVTIGILFANLVNYGTSHIKSQWG-WRISLGLAGIPAA 163 (473)
Q Consensus 98 ~~~~~~~~~~i~~~~~~~~r~~~~~~-~~~~~~lG~~~~~~~~~~~~~~~~~~~-wr~~f~~~~~~~~ 163 (473)
+...+...+++.|.+|+++|++++++ .+.+..+|..++|.+ .+.+.++.| |+..++......+
T Consensus 327 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~---~g~l~~~~g~~~~~~~~~~~~~l 391 (394)
T TIGR00883 327 GMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYI---AAALVAMTGDWYAIGYYLAALAL 391 (394)
T ss_pred HHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHH---HHHHHHHcCcchhHHHHHHHHHH
Confidence 99999999999999999999999998 456667888899988 444555556 8877766665443
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=2e-10 Score=108.50 Aligned_cols=148 Identities=16% Similarity=0.092 Sum_probs=113.6
Q ss_pred cccCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhh-hHHHHHHHHHHHhhhhhhhhh
Q 012002 24 YCKYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVAAQ-NLAMLIVGRILLGCGVGFANQ 102 (473)
Q Consensus 24 ~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~l~~i~~~~~~~~~-~~~~l~~~r~l~G~~~~~~~~ 102 (473)
++|.+..+.|.+.+.+.++..++.++.|++.||+|||+.+..+..+..++.++....+ +...+ .-++.|++.+...+
T Consensus 234 ~~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~l~g~g~g~~~~ 311 (393)
T PRK09705 234 EIGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWLPLQLPVL--WAMVCGLGLGGAFP 311 (393)
T ss_pred HcCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHccchHHHH--HHHHHHHhccchHH
Confidence 4689999999999999999999999999999999999999988888777766554333 22222 23466888888888
Q ss_pred hhhHHHhhcCC-CCCchhhHHHHHHHHHHHHHHHHHHhhhccccCCccc-hHHHHHhhhHHHHHHHHH-hhcccCCh
Q 012002 103 AVPLFLSEIAP-TRIRGGLNILFQLNVTIGILFANLVNYGTSHIKSQWG-WRISLGLAGIPAALLTVG-SLLVTDTP 176 (473)
Q Consensus 103 ~~~~~i~~~~~-~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~-wr~~f~~~~~~~~~~~~~-~~~~~e~p 176 (473)
.......+..+ +++|++.+++.+....++..++|.+ .+.+.+..| |+..|++..+..++..+. ..+.||++
T Consensus 312 ~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~---~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (393)
T PRK09705 312 LCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWF---SGVLRSISGNYLMDWAFHALCVVGLMIITLRFAPARF 385 (393)
T ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhccccc
Confidence 77777777775 5678999999999999999999999 444444443 788888877776666555 44566654
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.2e-09 Score=100.97 Aligned_cols=151 Identities=10% Similarity=-0.045 Sum_probs=101.3
Q ss_pred hHHHHHHHHHHhhcchhHHHHHhHHHHHH-HcCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHhHHhHHHHHH
Q 012002 233 QLVIAVALQIFQQCTGINAIMFYAPVLFK-TLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLS 311 (473)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~ 311 (473)
+.++...+.+...+.....+....+.+.+ ++|++..+.+++.++..+...++++..|++.||+|.|+++.++.++..+.
T Consensus 34 r~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i~ 113 (462)
T PRK15034 34 RNLWISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILIIP 113 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 34555555555555555555555566655 69999999999999999999999999999999999999999888887777
Q ss_pred HHHHHHHHhhhhccCCcccchhhHHHHHHHHHHHHHhhhccccccccccccccccccchhhhHHHHHHHHHHHHHHHHHH
Q 012002 312 QTVIAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQA 391 (473)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (473)
.+...+.... ...+.+..++ ..++.+..+. ..+.....+++.+|+++||++.|+....+++|..+.+.+
T Consensus 114 ~~~~~~a~~~---------~~~s~~~lli-~r~l~Gigg~-~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l 182 (462)
T PRK15034 114 CVWLGIAVQN---------PNTPFGIFIV-IALLCGFAGA-NFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLV 182 (462)
T ss_pred HHHHHHHHcc---------cCCCHHHHHH-HHHHHHHHHH-hHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHH
Confidence 7665543100 0011112222 2222221222 223455667899999999999999977777777666555
Q ss_pred HHH
Q 012002 392 FLS 394 (473)
Q Consensus 392 ~~~ 394 (473)
.+.
T Consensus 183 ~p~ 185 (462)
T PRK15034 183 APL 185 (462)
T ss_pred HHH
Confidence 544
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=4.7e-10 Score=105.70 Aligned_cols=160 Identities=17% Similarity=0.159 Sum_probs=115.5
Q ss_pred HHHHhHHHHHHHcCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHhHHhHHHHHHHHHHHHHHhhhhccCCccc
Q 012002 251 AIMFYAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKDHSEDL 330 (473)
Q Consensus 251 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (473)
......|.+.+++|.++.+.+...+...++..++.++.|++.||+|||+.+..+.....++........
T Consensus 9 ~~~p~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~----------- 77 (377)
T PRK11102 9 MYLPALPVIAADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQ----------- 77 (377)
T ss_pred HHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHc-----------
Confidence 344566778888999999999999999999999999999999999999999988887777776665431
Q ss_pred chhhHHHHHHHHHHHHHhhhccccccccccccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHH
Q 012002 331 HTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHFKFGIFLFFSGW 410 (473)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (473)
+ .+...... +..+.......+....+..|.+|+++|+++.++.+....++..++|.+.+.+.+..++...+...++
T Consensus 78 -~--~~~~~~~~-~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~ 153 (377)
T PRK11102 78 -T--IDQLIYMR-FLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLAL 153 (377)
T ss_pred -c--HHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHH
Confidence 1 11122222 2222222223344556778999999999999999999999999999999999887776655544433
Q ss_pred -HHHHHHHHHhhccCC
Q 012002 411 -VLIMSCFVFFLLPET 425 (473)
Q Consensus 411 -~~~~~~~~~~~~~~~ 425 (473)
..+..++..+..+|+
T Consensus 154 ~~~~~~~~~~~~~~~~ 169 (377)
T PRK11102 154 AAILAAALVFFFIPET 169 (377)
T ss_pred HHHHHHHHHHHhCCcc
Confidence 333344444555554
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.18 E-value=8e-10 Score=106.50 Aligned_cols=185 Identities=14% Similarity=0.077 Sum_probs=129.9
Q ss_pred hhcccCchhHHHHHHHHHHhhcchhHHHHHhHHHHHHHcCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHhHH
Q 012002 225 LLKRRNRPQLVIAVALQIFQQCTGINAIMFYAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEA 304 (473)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~ 304 (473)
.+|++..+.++..-.+.. .+......-.+-+..+..-|+...+++.....+..++..+++|.+.||++||++++.+
T Consensus 6 plr~~~Fr~lw~a~~iS~----lG~~~~~va~~wlv~~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~drrrili~~ 81 (524)
T PF05977_consen 6 PLRNRNFRRLWIAQLISN----LGDWMQTVALAWLVTQLTGSPLMVALVQAASTLPILLLSLFAGALADRFDRRRILILS 81 (524)
T ss_pred cccCchHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHH
Confidence 355666555444444333 3444444444444555556778888888888999999999999999999999999998
Q ss_pred hHHHHHHHHHHHHHHhhhhccCCcccchhhHHHHHHHHHHHHHhhhccccccccccccccccccchhhhHHHHHHHHHHH
Q 012002 305 GIQMFLSQTVIAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLF 384 (473)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 384 (473)
-+..++....+.+... ........+....+..++......|...+++.|++|+++...+.++.+...++.
T Consensus 82 ~~~~~~~~~~L~~l~~----------~~~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~nia 151 (524)
T PF05977_consen 82 QLLRALVALLLAVLAF----------FGLLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIA 151 (524)
T ss_pred HHHHHHHHHHHHHHHH----------hCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHH
Confidence 8877766665555432 111222233333344444444555777888899999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhcc
Q 012002 385 TFVIAQAFLSMLCHFKFGIFLFFSGWVLIMSCFVFFLLP 423 (473)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (473)
..++|.+.|.+....|....+.+.+++.+..++.....+
T Consensus 152 r~iGPalgG~Lva~~G~~~~f~inalsfl~~i~~l~~~~ 190 (524)
T PF05977_consen 152 RIIGPALGGILVAFFGAAAAFLINALSFLISILALLRWK 190 (524)
T ss_pred HhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 999999999999888877777776666666555554443
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=4.4e-10 Score=105.92 Aligned_cols=141 Identities=16% Similarity=0.105 Sum_probs=118.1
Q ss_pred CcccCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhhh
Q 012002 23 NYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVAAQNLAMLIVGRILLGCGVGFANQ 102 (473)
Q Consensus 23 ~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~l~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~ 102 (473)
++.|.+..+.|.+.+...++..+..++.|++.||+|+|+.+..+.++.+++.++.+++++.+.+++..++.|++.+...+
T Consensus 233 ~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~ 312 (382)
T PRK11128 233 QAAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGSTTALPWLIVIQILHCGTFTVCHL 312 (382)
T ss_pred HHCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 35789999999999999999999999999999999999999999999999888888899999999999999999999999
Q ss_pred hhhHHHhhcCCCCCchhhHHHHH-HHHHHHHHHHHHHhhhccccCCccchHHHHHhhhHHHHHHHHH
Q 012002 103 AVPLFLSEIAPTRIRGGLNILFQ-LNVTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVG 168 (473)
Q Consensus 103 ~~~~~i~~~~~~~~r~~~~~~~~-~~~~lG~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~ 168 (473)
....++.+. +++++++..+..+ ...++|..+||.+ .+.+.+.+|+ ..++..+++.++.+++
T Consensus 313 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i---~G~l~~~~g~-~~~~~~~~~~~~~~~~ 374 (382)
T PRK11128 313 AAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVL---SGFLYQHLGA-GVFWVMALVALPALFI 374 (382)
T ss_pred HHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhccH-HHHHHHHHHHHHHHHH
Confidence 999998886 5666788888876 5567788899999 5555566677 4666666666554443
|
|
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.4e-09 Score=105.52 Aligned_cols=168 Identities=11% Similarity=0.042 Sum_probs=115.3
Q ss_pred HHHHHHHHHhhcchhHHHHHhHHHHH-HHcCCCCcchHHHHHHHHHHHHHHHHHHHHHHhh-cCcchhHhHHhHHHHHHH
Q 012002 235 VIAVALQIFQQCTGINAIMFYAPVLF-KTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDK-VGRRMLLLEAGIQMFLSQ 312 (473)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~~~~~~~~~~~~~~~~~~ 312 (473)
++..+...++....++.+..+.+.++ +++|++..+++..............+++|+++|| +|||+.+..+.++..++.
T Consensus 23 ~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~ 102 (500)
T PRK09584 23 FYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGY 102 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence 55666666677777788888888877 5599998888777766665555556789999999 599999999888887776
Q ss_pred HHHHHHHhhhhccCCcccchhhHHHHHHHHHHHHHhhhccccccccccccccccccc--hhhhHHHHHHHHHHHHHHHHH
Q 012002 313 TVIAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLET--RSAGQSVTVCVNLLFTFVIAQ 390 (473)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~--~~~~~~~~~~~~~~~~~~~~~ 390 (473)
.++... .. ..........+.. .......+....+..|.+|++. +..+.++.+...++|..++|.
T Consensus 103 ~l~~~~------------~~-~~~~l~~~~~l~g-ig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~ 168 (500)
T PRK09584 103 ALVAWS------------GH-DAGIVYMGMATIA-VGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSML 168 (500)
T ss_pred HHHHHh------------cc-cHHHHHHHHHHHH-HhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHH
Confidence 655542 11 1111222222222 2222233455567789887643 456788889999999999999
Q ss_pred HHHHHhhhhhhhHHHHHHHHHHHHHH
Q 012002 391 AFLSMLCHFKFGIFLFFSGWVLIMSC 416 (473)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (473)
+.+++.++.++...+...++..+.++
T Consensus 169 i~g~l~~~~g~~~~F~i~~i~~~i~~ 194 (500)
T PRK09584 169 ATPWLAAKYGWSVAFALSVVGMLITV 194 (500)
T ss_pred HHHHHHHhhCHHHHHHHHHHHHHHHH
Confidence 99999998888776666554444433
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.7e-09 Score=102.51 Aligned_cols=149 Identities=5% Similarity=-0.079 Sum_probs=106.4
Q ss_pred HHHHHHHHhhcchhHHHHHhHHHHHHHcCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHhHHhHHHHHHHHHH
Q 012002 236 IAVALQIFQQCTGINAIMFYAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVI 315 (473)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~ 315 (473)
+.....++.............|.+.+++|.+..+.+...+...++..++++..+++.||+|||+.+..+..+.+++..+.
T Consensus 6 ~~~~~~f~~~G~~~~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~ 85 (410)
T TIGR00885 6 ALITSLFALWGFANDITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFLF 85 (410)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHH
Confidence 33444444444444555677788888899999999999999999999999999999999999999999998888887665
Q ss_pred HHHHhhhhccCCcccchhhHHHHHHHHHHHHHhhhccccccccccccccccccchhhhHHHHHHHHHHHHHHHHHHHHHH
Q 012002 316 AIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSM 395 (473)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (473)
.... ...+.+..+...++.+.+.+. ..+....+..+..|++.+++..++.+....+|..+++.+.+.+
T Consensus 86 ~~~~-----------~~~~~~~~l~~~~l~G~g~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l 153 (410)
T TIGR00885 86 WPAA-----------EIMNYTLFLVGLFILTAGLGF-LETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQL 153 (410)
T ss_pred HHHH-----------hhccHHHHHHHHHHHHhhHHH-HHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4321 111122222222222222222 2223344556788889999999999999999999999988877
Q ss_pred h
Q 012002 396 L 396 (473)
Q Consensus 396 ~ 396 (473)
.
T Consensus 154 ~ 154 (410)
T TIGR00885 154 I 154 (410)
T ss_pred H
Confidence 4
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=99.17 E-value=4.9e-08 Score=90.93 Aligned_cols=341 Identities=13% Similarity=0.023 Sum_probs=179.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHh--------h----hHH---HHHHHHHHHhhhhhh-
Q 012002 36 TSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVAA--------Q----NLA---MLIVGRILLGCGVGF- 99 (473)
Q Consensus 36 ~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~l~~i~~~~~~~~--------~----~~~---~l~~~r~l~G~~~~~- 99 (473)
.-.-.+..++.++..|.+.||..|.+++..+.+..-++..+++.. + +-+ .+++.-.+.|.-.-.
T Consensus 44 gl~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Qn~sv~~s~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~i~~La 123 (432)
T PF06963_consen 44 GLVRSLSAILFGPWVGRWIDRSPRLKVIRTSLVVQNLSVAASCALFLLLLSYPSSSSQSSWLFIALFALLILLGAIERLA 123 (432)
T ss_pred HHHHHHHHHHhhHHHHHHHhCCcchhhHHHHHHHHHHHHHHHHHHHHHHHhCCccccccchHHHHHHHHHHHHHHHHHHH
Confidence 333445567788888999999999998877765533332222211 1 012 112222222221111
Q ss_pred hhhhhhHHHhhcC------CCCCchhhHHHHHHHHHHHHHHHHHHhhhccccCCccchHHHHHhhhHHHHHHHHH-hhcc
Q 012002 100 ANQAVPLFLSEIA------PTRIRGGLNILFQLNVTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVG-SLLV 172 (473)
Q Consensus 100 ~~~~~~~~i~~~~------~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~-~~~~ 172 (473)
......+.=.||. +++.+.+.++...-.--+.-+++|++ .+.+.+..+.+....+.+...++..+. .+++
T Consensus 124 s~~~~iavERDWVvvi~~~~~~~La~~NA~mRRIDL~ckllaPl~---vG~l~t~~s~~~~~~~i~~~N~~S~~vEy~~l 200 (432)
T PF06963_consen 124 SIANTIAVERDWVVVIAGGDPGALARMNATMRRIDLFCKLLAPLF---VGLLMTFASPVIAAIFIAGWNLASVFVEYFLL 200 (432)
T ss_pred HhhhhheeccchhhhhcCCChhhHHHHHHHHHHHHHHHHHHHHHH---HHHHhhccCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1112222223453 24445677777777777888999999 666666677888888777777776665 3322
Q ss_pred ----cCChhhHHhhCChHHHHHHHHHHhCCCCchHHHHHHHHHHhhhhhcccchHHhhcccCchhHHHHHHHHHHhhcch
Q 012002 173 ----TDTPNSLIERGRFEEGKAVLRKIRGTDKIEPEFLELVEASRIAKEVKHPFRNLLKRRNRPQLVIAVALQIFQQCTG 248 (473)
Q Consensus 173 ----~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (473)
...| .+..+++.++.....+.. .....+.+....+...+.-++....|+..++.+. +...+...+.++.
T Consensus 201 ~~VY~~~P-~L~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~w~~Y~~q~v----flas~alalLY~T- 273 (432)
T PF06963_consen 201 ARVYNSVP-ALAVKKRSSESESSSDEE-SSSESSSDPSILKRLWNPLRTIIRGWRTYFRQPV----FLASFALALLYFT- 273 (432)
T ss_pred HHHHHhCh-HhcCCCCCcccccccccc-ccccccchhhHHHHHHHHHHHHhccHHHHHhCHH----HHHHHHHHHHHHH-
Confidence 1222 222222222111000000 0000000000011111111222345555555443 3332222222222
Q ss_pred hHHHHHhHHHHHHHcCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHhHHhHHHHHHHHHHHHHHhhhhccCCc
Q 012002 249 INAIMFYAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKDHSE 328 (473)
Q Consensus 249 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (473)
.-.+......|+...|+++...+..-....+.++.+.++..++.+|+|..|.=.++......+..+.......+ ..
T Consensus 274 VLsf~~lmt~yl~~~G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~--~~-- 349 (432)
T PF06963_consen 274 VLSFGGLMTAYLKSQGYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAP--GS-- 349 (432)
T ss_pred HhcCcHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcC--CC--
Confidence 22234444556677799999999999999999999999999999999988877777665554444433332211 00
Q ss_pred ccc-hhhHHHHHHHHHHHHHhhhccccccccccccccccccchhhhHHHHHHHHHHHHHHHHHHH
Q 012002 329 DLH-TGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAF 392 (473)
Q Consensus 329 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (473)
+ .......++......=..-.++-.....+.+|..|+++||...|+-+...++...+.-.+.
T Consensus 350 --~~~~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~~~ 412 (432)
T PF06963_consen 350 --PFSSISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLSFVLT 412 (432)
T ss_pred --CchhhHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 1 1112222222222111111222223345668999999999999999999988776554443
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.16 E-value=4.9e-10 Score=106.79 Aligned_cols=152 Identities=13% Similarity=0.122 Sum_probs=131.0
Q ss_pred CCCcccCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhH--HHHHHHHHHHHHHHHHHHH--------hhhHHHHHHHH
Q 012002 21 DSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRR--LTMLIAGIFFIAGVAFNVA--------AQNLAMLIVGR 90 (473)
Q Consensus 21 ~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~Dr~Grr--~~l~~~~~l~~i~~~~~~~--------~~~~~~l~~~r 90 (473)
.++++|++..+...+.-+..+..++|++++|++.||+|.| ++++++++++.+..+...+ .++-+.+.+.-
T Consensus 308 a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~~~g~~~~~~f~~~a 387 (477)
T PF11700_consen 308 ATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLYGLFGFWPSFFGLKSPWEFWVLA 387 (477)
T ss_pred HHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhhhcccCcccHHHHHHHH
Confidence 3567899999999999999999999999999999999999 8999998888776666666 67888999999
Q ss_pred HHHhhhhhhhhhhhhHHHhhcCCCCCchhhHHHHHHHHHHHHHHHHHHhhhccccCCccchHHHHHhhhHHHHHHHHHhh
Q 012002 91 ILLGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVGSL 170 (473)
Q Consensus 91 ~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~ 170 (473)
++.|+..|+.++...++.+|..|+++.+..+|++....-....+||++.+......+ +-|+.+....++.++.+++.+
T Consensus 388 ~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg--~~r~g~~~l~~lf~~gl~ll~ 465 (477)
T PF11700_consen 388 VLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATG--SQRYGFLFLLVLFLIGLILLF 465 (477)
T ss_pred HHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CchhHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999444444332 378888887777777777766
Q ss_pred cccC
Q 012002 171 LVTD 174 (473)
Q Consensus 171 ~~~e 174 (473)
+++.
T Consensus 466 ~v~~ 469 (477)
T PF11700_consen 466 FVDV 469 (477)
T ss_pred hccc
Confidence 6654
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.3e-09 Score=103.39 Aligned_cols=174 Identities=14% Similarity=0.093 Sum_probs=119.7
Q ss_pred HHHHHhhcchhHHHHHhHHHHHHHcCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhc-----Ccch-hHhHHhHHHHHHH
Q 012002 239 ALQIFQQCTGINAIMFYAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKV-----GRRM-LLLEAGIQMFLSQ 312 (473)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-----~~~~-~~~~~~~~~~~~~ 312 (473)
...++.+...+.....-+|.++++.|++.++.|.+...... .+..++.|+++||+ |||| .+..+....+++.
T Consensus 5 ~~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~ 82 (402)
T PRK11902 5 LLLGFASGLPLALTSGTLQAWMTVEGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASI 82 (402)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHH
Confidence 34455566677778888999999999999999988665554 58889999999999 7765 5666666666666
Q ss_pred HHHHHHHhhhhccCCcccchhhHHHHHHHHHHHHHhhhccccccccccccccccccchhhhHHHHHHHHHHHHHHHHHHH
Q 012002 313 TVIAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAF 392 (473)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (473)
..+.+.. +....+. +....+....+.....+...+++.|..|+++|+++.++......++..+++.+.
T Consensus 83 ~~l~~~~-----------~~~~~~~-l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~ 150 (402)
T PRK11902 83 AAMAFCP-----------PHAALWP-LAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLA 150 (402)
T ss_pred HHHHhcC-----------ccchHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHH
Confidence 5554321 1111222 222222223334444456678889999999999999999998899999999998
Q ss_pred HHHhhh-hhhhHHHHHHHHHHHHHHHHHhhccCCC
Q 012002 393 LSMLCH-FKFGIFLFFSGWVLIMSCFVFFLLPETK 426 (473)
Q Consensus 393 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (473)
+.+.+. .++...+.+.++..+...+..+..+|++
T Consensus 151 ~~l~~~~~gw~~~f~i~a~~~l~~~l~~~~~~e~~ 185 (402)
T PRK11902 151 LWLADRVLGWGNTYLLMAGLMLAGALTTLWAPEPE 185 (402)
T ss_pred HHHHhcccCHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 888875 3676666655554444444455556543
|
|
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.3e-09 Score=96.41 Aligned_cols=175 Identities=12% Similarity=0.031 Sum_probs=122.2
Q ss_pred HHHHHHHHHhhcchhHHHHHhHHHHHHHcCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHhHHhHHHHHHHHH
Q 012002 235 VIAVALQIFQQCTGINAIMFYAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTV 314 (473)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~ 314 (473)
++...+.....+.....+....+.+-+++++|+.|.+++.++..+.+.+.++..|.+.||+|.|++...+.++..+-.+.
T Consensus 16 L~~S~~af~v~F~VW~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~IP~~~ 95 (417)
T COG2223 16 LWLSTLAFDVGFMVWTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIPCLG 95 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHHHHHH
Confidence 45455555444444455555556666779999999999999999999999999999999999999999998888888777
Q ss_pred HHHHHhhhhccCCcccchhhHHHHHHHHHHHHHhhhccccccccccccccccccchhhhHHHHHHHHHHHHHHHHHHHHH
Q 012002 315 IAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLS 394 (473)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (473)
..+... .... + .++.+.++.+. ..+...+...++++.+|++++|.+.|+.. .+++|..+...+.+.
T Consensus 96 ~~~a~~----------~~~~-~-~ll~~gll~G~-~GasFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~ 161 (417)
T COG2223 96 LAFAVT----------YPST-W-QLLVIGLLLGL-AGASFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPL 161 (417)
T ss_pred HHHHcc----------CCch-H-HHHHHHHHHhc-ccceehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHH
Confidence 777542 1111 1 12222222222 22223355677799999999999999999 999999999999888
Q ss_pred Hhhhhh---hhH-HHHHHHHHHHHHHHHHhhcc
Q 012002 395 MLCHFK---FGI-FLFFSGWVLIMSCFVFFLLP 423 (473)
Q Consensus 395 ~~~~~~---~~~-~~~~~~~~~~~~~~~~~~~~ 423 (473)
+....+ +.. ..+.....++..+..++...
T Consensus 162 v~~~~g~~~w~~~~~i~~~~l~v~~v~~~~~~~ 194 (417)
T COG2223 162 VAVAFGFLAWRNVAGIYVVALAIAAVLAWLGMN 194 (417)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 888777 433 33344444444444444443
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.1e-08 Score=100.92 Aligned_cols=147 Identities=15% Similarity=0.203 Sum_probs=119.1
Q ss_pred cccCCCchhHHHHHHHHHHHHHHHHHHHHhhhh-hhhHHHHHHHHHHHHHHHHHHHHhhh--------HHHHHHHHHHHh
Q 012002 24 YCKYDNQGLQLFTSSLYLAGLTATFFASYTTRR-LGRRLTMLIAGIFFIAGVAFNVAAQN--------LAMLIVGRILLG 94 (473)
Q Consensus 24 ~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~Dr-~Grr~~l~~~~~l~~i~~~~~~~~~~--------~~~l~~~r~l~G 94 (473)
.+|++++....+...+....-+..+++|+++|+ +||++.+.++.++..++.++.+++.. ....+++-.+..
T Consensus 17 ~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~l~gLaLia 96 (654)
T TIGR00926 17 FLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLDLLGLALIA 96 (654)
T ss_pred HcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHHHHHHHHHH
Confidence 468899999999999999999999999999996 59999999999999999988877521 234667788899
Q ss_pred hhhhhhhhhhhHHHhhcCCCCC---chhhHHHHHHHHHHHHHHHHHHhhhcccc----CCccchHHHHHhhhHHHHHHHH
Q 012002 95 CGVGFANQAVPLFLSEIAPTRI---RGGLNILFQLNVTIGILFANLVNYGTSHI----KSQWGWRISLGLAGIPAALLTV 167 (473)
Q Consensus 95 ~~~~~~~~~~~~~i~~~~~~~~---r~~~~~~~~~~~~lG~~~~~~~~~~~~~~----~~~~~wr~~f~~~~~~~~~~~~ 167 (473)
+|.|+.-+...+...|.+++++ |...+.++..+.++|..+++++......- ....+|...|.+.++..++..+
T Consensus 97 ~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia~l 176 (654)
T TIGR00926 97 LGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPAILMILALI 176 (654)
T ss_pred hhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHHHHHHHHHH
Confidence 9999999999999999997543 66788889999999999998884333211 1234799999998888877766
Q ss_pred Hhh
Q 012002 168 GSL 170 (473)
Q Consensus 168 ~~~ 170 (473)
+..
T Consensus 177 vf~ 179 (654)
T TIGR00926 177 VFM 179 (654)
T ss_pred HHH
Confidence 643
|
|
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=99.15 E-value=7e-10 Score=110.24 Aligned_cols=161 Identities=10% Similarity=-0.080 Sum_probs=116.7
Q ss_pred HHHHHHhhcchhHHHHHhHHHHHHHcCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHhHHhHHHHHHHHHHHH
Q 012002 238 VALQIFQQCTGINAIMFYAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAI 317 (473)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~ 317 (473)
..+..+............++.+.++++++..+.|++.+.+.++..++.++.+++.||.+||+.+.++.++.+++.++.++
T Consensus 38 ~~~~~~~~~~~~g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~al 117 (633)
T TIGR00805 38 LTCAQLQGLLYNGLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSL 117 (633)
T ss_pred HHHHHHHHHHHHHHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhC
Confidence 33344444433344555566777789999999999999999999999999999999999999999999999999888766
Q ss_pred HHhhhhcc-C--------------------C--cc-----------cch--hhHHHHHHHHHHHHHhhhccccccccccc
Q 012002 318 ILGIKVKD-H--------------------S--ED-----------LHT--GFAVLVVIMICTFISAFAWSWGPLGWLIP 361 (473)
Q Consensus 318 ~~~~~~~~-~--------------------~--~~-----------~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (473)
........ . . ++ ... ...+..+++.-++.+.......++..+++
T Consensus 118 phf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i 197 (633)
T TIGR00805 118 PHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYI 197 (633)
T ss_pred hHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhh
Confidence 53211000 0 0 00 000 11233333444555555556667788899
Q ss_pred cccccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 012002 362 SETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCH 398 (473)
Q Consensus 362 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (473)
.|.+|++.|+...|+.+....+|..+++.+.+.+.+.
T Consensus 198 ~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~ 234 (633)
T TIGR00805 198 DDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQI 234 (633)
T ss_pred hccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhc
Confidence 9999999999999999999999999999998887753
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=99.13 E-value=7.1e-09 Score=96.00 Aligned_cols=160 Identities=12% Similarity=0.053 Sum_probs=119.7
Q ss_pred HHHHhHHHHHHHcCCCCcc-hHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHhHHhHHHHHHHHHHHHHHhhhhccCCcc
Q 012002 251 AIMFYAPVLFKTLGFGGSA-SLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKDHSED 329 (473)
Q Consensus 251 ~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (473)
...+..|++.+++|++..+ .+.+......+..+..+..|+++||+|.|+++..+.+...+..++.++...
T Consensus 44 n~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~S--------- 114 (511)
T TIGR00806 44 GESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGTS--------- 114 (511)
T ss_pred hHHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHH---------
Confidence 3445667777889999999 999999999999999999999999999999999988888888777776421
Q ss_pred cchhhHHHHHHHHHHHHHhhhccccccccccccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhh---HHHH
Q 012002 330 LHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHFKFG---IFLF 406 (473)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 406 (473)
.....+.-++++.+-+ ... ....++.+.+|+++|+++.|+.+....+|.++++++.+. ....++. ....
T Consensus 115 -----l~~L~i~R~llGvaEA-~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~ql-l~s~gWr~y~~Ln~ 186 (511)
T TIGR00806 115 -----VWHMQLMEVFYSVTMA-ARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQL-LVTLGWISYSTLNI 186 (511)
T ss_pred -----HHHHHHHHHHHHHHHH-HHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCchhHHHHHH
Confidence 1222222223332222 222 556677899999999999999999999999999999998 4455543 3444
Q ss_pred HHHHHHHHHHHHHhhccCCCC
Q 012002 407 FSGWVLIMSCFVFFLLPETKN 427 (473)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~ 427 (473)
+......++++..+++|..++
T Consensus 187 Isl~s~~~a~~~a~~LP~~~~ 207 (511)
T TIGR00806 187 ISLVFMTFSVFLALFLKRPKR 207 (511)
T ss_pred HHHHHHHHHHHHHHhCCCCch
Confidence 555666667777788885443
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.1e-10 Score=105.65 Aligned_cols=179 Identities=12% Similarity=0.027 Sum_probs=134.2
Q ss_pred HHHHHHHHHhhcchhHHHHHhHHHHHHHcCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHhHHhHHHHHHHHH
Q 012002 235 VIAVALQIFQQCTGINAIMFYAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTV 314 (473)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~ 314 (473)
...+++....+..--+.+....+..-+.++.++...|++.....+...+.+++.|++.||++||+++.++..+-.++.+.
T Consensus 35 l~il~~vnlmny~Dr~~iagv~~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~Av~~ 114 (493)
T KOG1330|consen 35 LVILCLVNLMNYADRYTIAGVLKEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTLAVFA 114 (493)
T ss_pred HHHHHHHHHHHHhhhhhhhhhhHHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHHHHHH
Confidence 44444444444444445544555555568999999999999999999999999999999999999999998888887777
Q ss_pred HHHHHhhhhccCCcccchhhHHHHHHHHHHHHHhhhccccccccccccccccccchhhhHHHHHHHHHHHHHHHHHHHHH
Q 012002 315 IAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLS 394 (473)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (473)
..+. ...+.+.+.=.+.+....++.|+...+++|.+|.++|++++++.+....+|..++-.....
T Consensus 115 ~~fs---------------~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~ 179 (493)
T KOG1330|consen 115 SGFS---------------NHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSV 179 (493)
T ss_pred HHHH---------------HHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeee
Confidence 7664 2333444455556666778888999999999999999999999999999998888877777
Q ss_pred Hhhhhh-hhH-HHHHHHHHHHHHHHHHhhccCCCCC
Q 012002 395 MLCHFK-FGI-FLFFSGWVLIMSCFVFFLLPETKNV 428 (473)
Q Consensus 395 ~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (473)
+.+..+ |.. +...+++.++++++..++.+|++++
T Consensus 180 va~~~~~Wr~af~~~avl~vi~~~L~~~f~~eP~rg 215 (493)
T KOG1330|consen 180 VASLTFWWRWAFRGSAVLGVIVGLLVFLFVREPERG 215 (493)
T ss_pred eccCccceEEEEEeehHHHHHHHHHHHhhccCcccc
Confidence 776655 433 3444555555666666777776554
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=5.4e-09 Score=100.18 Aligned_cols=172 Identities=10% Similarity=-0.033 Sum_probs=104.7
Q ss_pred HHHHHHhhcchhHHHHHhHHHHHHHcC---CCCcc---hHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHhHHhHHHHHH
Q 012002 238 VALQIFQQCTGINAIMFYAPVLFKTLG---FGGSA---SLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLS 311 (473)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~g---~~~~~---~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~ 311 (473)
..+..+........+....|.+.++++ .+..+ .+.......++..+++++.|+++||+|||+.+..+.....++
T Consensus 27 ~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~ 106 (432)
T PRK10406 27 ASSGNLVEWFDFYVYSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKSMLISVCMMCFG 106 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 334444445555566666677777764 33332 233444555666799999999999999999999998888888
Q ss_pred HHHHHHHHhhhhccCCcccchhhHHHHHHHHHHHHHhhhccccccccccccccccccchhhhHHHHHHHHHHHHHHHHHH
Q 012002 312 QTVIAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQA 391 (473)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (473)
.+...+..... .........+...-+..+.......+...+++.|.+|+++|+...++.......|..+++.+
T Consensus 107 ~~~~~~~~~~~-------~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~~ 179 (432)
T PRK10406 107 SLVIACLPGYE-------TIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALLV 179 (432)
T ss_pred HHHHhhcCCch-------hHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHH
Confidence 77766531100 00001112222222333333334445667888999999999999888877766666666655
Q ss_pred HHHHh--------hhhhhhHHHHHHHHHHHHHH
Q 012002 392 FLSML--------CHFKFGIFLFFSGWVLIMSC 416 (473)
Q Consensus 392 ~~~~~--------~~~~~~~~~~~~~~~~~~~~ 416 (473)
...+. ...+|...+.+.++..+...
T Consensus 180 ~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~~ 212 (432)
T PRK10406 180 VVVLQQTLEDAELREWGWRIPFALGAVLAVVAL 212 (432)
T ss_pred HHHHHHhCCHHHHhccchHHHHHHHHHHHHHHH
Confidence 43332 24567766666555444433
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.10 E-value=1e-09 Score=104.01 Aligned_cols=140 Identities=16% Similarity=0.225 Sum_probs=119.9
Q ss_pred cCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhhhhhh
Q 012002 26 KYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVAAQNLAMLIVGRILLGCGVGFANQAVP 105 (473)
Q Consensus 26 ~~s~~~~~~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~l~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~ 105 (473)
+.+....|.+.+...+...++.++.|++.||+|||+.+.++..+.+++..+...+++.+.+++.+++.|++.........
T Consensus 250 ~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~ 329 (396)
T TIGR00882 250 QQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFATTALEVVILKMLHAFEVPFLLVGCF 329 (396)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667789999999999999999999999999999999999999999888878889999999999999999877777777
Q ss_pred HHHhhcCCCCCchhhHHH-HHHHHHHHHHHHHHHhhhccccCCccchHHHHHhhhHHHHHHHHH
Q 012002 106 LFLSEIAPTRIRGGLNIL-FQLNVTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVG 168 (473)
Q Consensus 106 ~~i~~~~~~~~r~~~~~~-~~~~~~lG~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~ 168 (473)
.+..+..+++.++...+. .+....+|..+++.+ .+.+.+..||+..|.+.+++.++..++
T Consensus 330 ~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l---~G~l~~~~G~~~~f~~~~~~~~i~~~~ 390 (396)
T TIGR00882 330 KYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTL---AGNMYDSIGFQGAYLVLGCIVLLFTLI 390 (396)
T ss_pred HHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHh---HHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 788888888878776665 678889999999999 666666679999999988888776665
|
|
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=3.8e-09 Score=102.30 Aligned_cols=168 Identities=13% Similarity=0.106 Sum_probs=105.3
Q ss_pred chhHHHHHhHHHHHHHcCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHhHHhHHHHHHHHHHHHHHhhhhccC
Q 012002 247 TGINAIMFYAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKDH 326 (473)
Q Consensus 247 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (473)
...+.+..+.|.+.+++|++..+.+.+....... ....++.|++.||+|+|+++.++.+...++.++.++.....
T Consensus 41 g~~y~fsv~s~~L~~~lgls~~~l~~i~svg~~~-g~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~---- 115 (591)
T PTZ00207 41 SFMYAFNLISGAMQARYNLTQRDLSTITTVGIAV-GYFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEV---- 115 (591)
T ss_pred HHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH-HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhccc----
Confidence 3446677788888888999999888777653333 34566789999999999999999999999888777642100
Q ss_pred CcccchhhHHHHHHHHHHHHHhhhccccccccccccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHH
Q 012002 327 SEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHFKFGIFLF 406 (473)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (473)
...+.+...+..++.+.+ .....+.....+.+.+| +.||.+.|+......+|+.+.+.+...+........+++
T Consensus 116 ----i~~s~~~l~l~r~l~G~G-~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~~~~~~~fl~ 189 (591)
T PTZ00207 116 ----IEGSVVRLSVYNGLMTLG-CMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFSDNTSAYFFF 189 (591)
T ss_pred ----ccCcHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 001122222222222211 11111222344567786 679999999999999999876666655544322334444
Q ss_pred HHHHHHHHHHHHHhhccCC
Q 012002 407 FSGWVLIMSCFVFFLLPET 425 (473)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~ 425 (473)
.+.+..+.+++...+++..
T Consensus 190 l~vl~~vv~ll~~~~vr~p 208 (591)
T PTZ00207 190 LMSFALVVGILAIVFMRLP 208 (591)
T ss_pred HHHHHHHHHHHHHhheeCC
Confidence 5555555555555555443
|
|
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.07 E-value=4.7e-09 Score=96.86 Aligned_cols=146 Identities=12% Similarity=-0.039 Sum_probs=102.7
Q ss_pred cchhHHHHHhHHHHHHHcCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHhHHhHHHHHHHHHHHHHHhhhhcc
Q 012002 246 CTGINAIMFYAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKD 325 (473)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (473)
..+.....+++=-.+++.+-.+...|........+.++.-+..+++.+|+|+-+++..++....+-++.+...
T Consensus 384 G~g~~lv~tFLfWHled~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L------- 456 (618)
T KOG3762|consen 384 GAGVGLVFTFLFWHLEDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYL------- 456 (618)
T ss_pred HHHHHHHHHHHHHHHhhcCCcceeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHh-------
Confidence 3333444444433456777777778888888888999999999999999999999998877777666665554
Q ss_pred CCcccchhhHHHHHHHHHHHHHhhhccccccccccccccccccchhhhHHHHHHHH-HHHHHHHHHHHHHHhhhhhhhHH
Q 012002 326 HSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVN-LLFTFVIAQAFLSMLCHFKFGIF 404 (473)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 404 (473)
.++|+.+.+=.+-.......+. ...+|++...|++.+.++.++..... .+|-.++..+.|.+...++....
T Consensus 457 -------~n~W~vLPieilqgit~aliWa-a~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~~tt 528 (618)
T KOG3762|consen 457 -------QNPWMVLPIEILQGITHALIWA-AIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFGARTT 528 (618)
T ss_pred -------cCchheeeHHHHHHHHHHHHHH-HHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeehhHHH
Confidence 2344444443444444444443 33467789999999999999988875 46788888888988888775444
Q ss_pred HH
Q 012002 405 LF 406 (473)
Q Consensus 405 ~~ 406 (473)
+-
T Consensus 529 f~ 530 (618)
T KOG3762|consen 529 FR 530 (618)
T ss_pred HH
Confidence 33
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.6e-09 Score=106.27 Aligned_cols=137 Identities=21% Similarity=0.135 Sum_probs=112.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhH--HHHHHHHHHHhhhhhhhhhhhhHHHhhcC
Q 012002 35 FTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVAAQNL--AMLIVGRILLGCGVGFANQAVPLFLSEIA 112 (473)
Q Consensus 35 ~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~l~~i~~~~~~~~~~~--~~l~~~r~l~G~~~~~~~~~~~~~i~~~~ 112 (473)
......+...++.++.+++.||+|||+.+.++.++.+++.++..+.++. +...+.-++.+++.+..++....+..|.+
T Consensus 360 ~~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 439 (505)
T TIGR00898 360 DLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGITSAFQMVYLYTAELY 439 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 3344556667888999999999999999999999999988888877654 45555667777888888889999999999
Q ss_pred CCCCchhhHHHHHHHHHHHHHHHHHHhhhccccCCccchHHHHHhhhHHHHHHHHHhhcccCCh
Q 012002 113 PTRIRGGLNILFQLNVTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVGSLLVTDTP 176 (473)
Q Consensus 113 ~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p 176 (473)
|.+.|+.++++.+....+|.+++|.+.. . ...++..++++.++..++..++.+++||+.
T Consensus 440 p~~~r~~~~g~~~~~~~ig~~i~p~i~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~lpet~ 498 (505)
T TIGR00898 440 PTVVRNLGVGVCSTMARVGSIISPFLVY-L----GEKWLFLPLVLFGGLALLAGILTLFLPETK 498 (505)
T ss_pred cHHHHhhhHhHHHHHHHHHHHHHhHHHH-H----HHHHHhhHHHHHHHHHHHHHHHHHcCcCCC
Confidence 9999999999999999999999999844 1 234577788888888888777777888864
|
|
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.06 E-value=2.8e-09 Score=100.87 Aligned_cols=143 Identities=13% Similarity=0.013 Sum_probs=109.8
Q ss_pred CcccCCCchhHHHHHHHHH-HHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHH------hhhHHHHHHHHHHHhh
Q 012002 23 NYCKYDNQGLQLFTSSLYL-AGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVA------AQNLAMLIVGRILLGC 95 (473)
Q Consensus 23 ~~~~~s~~~~~~~~s~~~~-~~~~~~~~~g~l~Dr~Grr~~l~~~~~l~~i~~~~~~~------~~~~~~l~~~r~l~G~ 95 (473)
+|.|++++++|++.+.... ...++.++.|++.||+|+|+.+..+..+.++..+.... .++.+.+.....+.++
T Consensus 236 ~~~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (390)
T TIGR02718 236 VDAGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLAPGIAVAWSCSAFGSL 315 (390)
T ss_pred HhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCcHHHHHHHHHHHHH
Confidence 4469999999999988764 66778899999999999999998877766443333221 1233344555666777
Q ss_pred hhhhhhhhhhHHHhhcCCC-CCchhhHHHHHHHHHHHHHHHHHHhhhccccCCccchHHHHHhhhHHHHHHHHH
Q 012002 96 GVGFANQAVPLFLSEIAPT-RIRGGLNILFQLNVTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVG 168 (473)
Q Consensus 96 ~~~~~~~~~~~~i~~~~~~-~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~ 168 (473)
+.+...+...+.+.+..++ +++++.++..+...++|..++|.+ .+.+.+..||+..|++.+++.++..++
T Consensus 316 ~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~---~G~l~~~~G~~~~f~~~~~~~l~a~~~ 386 (390)
T TIGR02718 316 ITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSI---AGYLTDRFGYAGGFLSGTVLAVLAILL 386 (390)
T ss_pred HHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHccHHHHHHHHHHHHHHHHH
Confidence 7888888888888888776 789999999999999999999999 555556678999998888777665544
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=7.1e-09 Score=111.89 Aligned_cols=190 Identities=10% Similarity=0.028 Sum_probs=115.5
Q ss_pred HhhcccCchhHHHHHHHHHHhhcchhHHHHHhHHHHHHH-cCCC-CcchHHHHHHHHHHHHHHHHHHHHHHhhcCcchhH
Q 012002 224 NLLKRRNRPQLVIAVALQIFQQCTGINAIMFYAPVLFKT-LGFG-GSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLL 301 (473)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~ 301 (473)
++++.+..+++++..++..+........+..+..+.+.. .+.+ ....++..+...+..++..+++|+++||++||+++
T Consensus 6 ~l~~~~~f~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~ 85 (1140)
T PRK06814 6 YLMKSRRFAPLFWTQFFGAFNDNFLKNALVILILYGLSGALGAYNNALVTLAGAVFILPFFIFSALAGQLADKYDKAKLA 85 (1140)
T ss_pred hhhhccccHHHHHHHHHhHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHH
Confidence 356666655544444444443222222222222222221 2111 13356667778888899999999999999999976
Q ss_pred hHHhHHHHHHHHHHHHHHhhhhccCCcccchhhHHHHHHHHHHHHHhhhccccccccccccccccccchhhhHHHHHHHH
Q 012002 302 LEAGIQMFLSQTVIAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVN 381 (473)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 381 (473)
........+.......... . ...+ .+++..++.+.......|...+++.+.+|++.++.++|+.++..
T Consensus 86 ~~~~~~~~~~~~~~~~~~~----------~-~s~~-~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~ 153 (1140)
T PRK06814 86 KILKFAEIGIAALAIYGFH----------L-NSVP-LLFAALFLMGIHSALFGPIKYSILPDHLNKDELLGANALVEAGT 153 (1140)
T ss_pred HHHHHHHHHHHHHHHHHHH----------H-hhHH-HHHHHHHHHHHHHHhhchHHHHhhHhhcCccccchhhHHHHHHH
Confidence 4422222222211111110 1 1122 23333333444444555777888899999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhccCC
Q 012002 382 LLFTFVIAQAFLSMLCHFKFGIFLFFSGWVLIMSCFVFFLLPET 425 (473)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (473)
.++..++|.+.|.+.+..++...++..++..+.++++.++++++
T Consensus 154 ~ig~~igp~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (1140)
T PRK06814 154 FIAILLGTIIGGLATISGNFVILVALLMGIAVLGWLASLFIPKT 197 (1140)
T ss_pred HHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHhhCCCC
Confidence 99999999999999988887766655555555555555666554
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.8e-09 Score=102.62 Aligned_cols=114 Identities=19% Similarity=0.258 Sum_probs=97.8
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHhhhhhhhhhhhhH
Q 012002 28 DNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVAA-QNLAMLIVGRILLGCGVGFANQAVPL 106 (473)
Q Consensus 28 s~~~~~~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~l~~i~~~~~~~~-~~~~~l~~~r~l~G~~~~~~~~~~~~ 106 (473)
+..+.+++.+...++..++.+++++++||+|+|+++..+..+.+++.++..+. ++.+.+.+..++.|++.+...+...+
T Consensus 255 ~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 334 (437)
T TIGR00792 255 DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAGSNLPLILVLIILAGFGQNFVTGLVWA 334 (437)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888888899999999999999999999999999998888888777665 46677788889999999999999999
Q ss_pred HHhhcCC-------CCCchhhHHHHHHHHHHHHHHHHHHhhh
Q 012002 107 FLSEIAP-------TRIRGGLNILFQLNVTIGILFANLVNYG 141 (473)
Q Consensus 107 ~i~~~~~-------~~~r~~~~~~~~~~~~lG~~~~~~~~~~ 141 (473)
+++|..+ ++++|.++++.+....+|..+++.+.+.
T Consensus 335 ~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ 376 (437)
T TIGR00792 335 LVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGL 376 (437)
T ss_pred HHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998865 4567999999999999999999888443
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.5e-08 Score=97.19 Aligned_cols=167 Identities=17% Similarity=0.027 Sum_probs=105.3
Q ss_pred HHHHHHHHHhhcchhHHHHHhHHHHHHHcCCCCcchHHHH-HHH-----HHHHHHHHHHHHHHHhhcCcchhHhHHhHHH
Q 012002 235 VIAVALQIFQQCTGINAIMFYAPVLFKTLGFGGSASLYST-VIT-----GAVNVLSTLVSIYSVDKVGRRMLLLEAGIQM 308 (473)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~-----~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~ 308 (473)
....++..+........+....|.+.++++.+..+.+... +.. .+...++.++.|++.||+|||+.+..+..+.
T Consensus 17 ~~~~~~~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~ 96 (434)
T PRK15075 17 ILRVTSGNFLEMFDFFLFGFYATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKGLIVTLSIM 96 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHHHHHHHHHH
Confidence 5556666666666777788888998888988776644322 211 2223467889999999999999999988887
Q ss_pred HHHHHHHHHHHhhhhccCCcccchhhHHHHHHHHHHHHHhhhccccccccccccccccccchhhhHHHHHHHHHHHHHHH
Q 012002 309 FLSQTVIAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVI 388 (473)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 388 (473)
.++..+..+...... ........+...-+..+.......+....+.+|.+|++.|+++.++.....+++..++
T Consensus 97 ~~~~~l~~~~~~~~~-------~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~g 169 (434)
T PRK15075 97 ASGTLLIAFVPGYAT-------IGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAVVFA 169 (434)
T ss_pred HHHHHHHHhCCcHHH-------HHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHHHHHHHHHH
Confidence 777776665311000 0000001112222222222222233445678999999999999999988888777777
Q ss_pred HHHHHHHh--------hhhhhhHHHHHH
Q 012002 389 AQAFLSML--------CHFKFGIFLFFS 408 (473)
Q Consensus 389 ~~~~~~~~--------~~~~~~~~~~~~ 408 (473)
+.+.+.+. +..+|...+.+.
T Consensus 170 ~~~g~~l~~~~~~~~~~~~gWr~~f~~~ 197 (434)
T PRK15075 170 ALLGYLLNQWLSPAQMAEWGWRIPFLIG 197 (434)
T ss_pred HHHHHHHHHhCCHHHHhccchHHHHHHH
Confidence 66665542 345666555543
|
|
| >KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.03 E-value=8.6e-09 Score=89.63 Aligned_cols=343 Identities=8% Similarity=0.031 Sum_probs=200.6
Q ss_pred CcccCCCchhH-HHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhh
Q 012002 23 NYCKYDNQGLQ-LFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVAAQNLAMLIVGRILLGCGVGFAN 101 (473)
Q Consensus 23 ~~~~~s~~~~~-~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~l~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~ 101 (473)
.+.+++..++. -+.-...-.+.+.-++.=.+.|-.-.|+++++-.+.......+.-+.++.+.+=+.-++.|...+ ..
T Consensus 34 p~~NlT~~~l~~evyPvwTYSYLv~LvpvFlLTD~lrYKPvivlq~ls~v~~w~~lv~g~sV~~mQvlE~FyG~~tA-aE 112 (433)
T KOG3810|consen 34 PDKNLTEDQLTNEVYPVWTYSYLVGLVPVFLLTDYLRYKPVVVLQALSGVPVWIMLVFGPSVKAMQVLEFFYGPATA-AE 112 (433)
T ss_pred CCCCccHHHHhcccccchhHHHHHHHHHHHHHhhhhhcceeeeeeccchhHHHHHHHhcCCchheeeehhhcChHHH-HH
Confidence 34455555433 22333444566666777788999999999998888888888888899999999999999999887 56
Q ss_pred hhhhHHHhhcCCCCCchhhHHHHHHHHHHHHHHHHHHhhhccccCCccchHHHHHhhhHHHHHHHHHhhcccCChhhHHh
Q 012002 102 QAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVGSLLVTDTPNSLIE 181 (473)
Q Consensus 102 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~ 181 (473)
.+-++++-+..+++++.++.+...+..-.|...|..++-..... +..++...-.+......+..++.+++|..+|.+..
T Consensus 113 IAYysYIYs~Vd~~~Yqrvt~y~RaA~L~g~~~g~vlaQlLvs~-~~~sy~~LN~ISL~~~~ia~~~A~fLP~v~rSl~f 191 (433)
T KOG3810|consen 113 IAYYSYIYSKVDPEMYKRVTGYCRAAFLVGKFVGSVLAQLLVSL-ETLSYTTLNYISLAEVTIAVLLALFLPRVKRSLYF 191 (433)
T ss_pred HhhhheeeeecCHHHHHHHHHHhHHHHHHHhHHHhHHHHHHhhh-cccchhhhchhhHHHHHHHHHHHhhCCCCchhhhh
Confidence 78888999999999999999998888877777777663322221 12344444455444445555567788887776665
Q ss_pred hCChHHHHHHHHHHhCCCCchHHHHHHHHHHhhhhhcccchHHhhcccCchhHHHHHHHHHHhhcchhHHHHHhHHHHHH
Q 012002 182 RGRFEEGKAVLRKIRGTDKIEPEFLELVEASRIAKEVKHPFRNLLKRRNRPQLVIAVALQIFQQCTGINAIMFYAPVLFK 261 (473)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (473)
+.+.++.. .......+. +.+..+..+ .........+.+..+++. +....+.+.....+++...+|...+-+
T Consensus 192 ~~~~~~~~--v~~~e~~~~-~~~~~~~l~--~~~~~l~~~l~~~y~np~----ll~WSlWwAl~scg~~QV~nY~Q~LW~ 262 (433)
T KOG3810|consen 192 HRLEDKIS--VGDLEEMNP-QASYMSYLR--GAFVLLWRDLQECYSNPR----LLKWSLWWALASCGYYQVTNYTQILWK 262 (433)
T ss_pred hcccccce--eccchhcCc-cchhhHHHH--HHHHHHHHHHHHHhcCch----hhhhHHHHHHhhchhHHHHHHHHHHHH
Confidence 55544321 000000000 000000000 001111223344444444 555666677777788888888887777
Q ss_pred HcCCC--CcchHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHhHHhHHHHHHHHHHHHHHhhhhccCCcccchhhHHHHH
Q 012002 262 TLGFG--GSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKDHSEDLHTGFAVLVV 339 (473)
Q Consensus 262 ~~g~~--~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (473)
+..-. ..-.|..-++..+.+.++.+..|.+.-.+.|+.-+.++......+.+++... .....|...
T Consensus 263 ~~~~~~~~vyNG~veAv~tlLGa~~~~~~g~l~i~w~r~g~~ll~~~s~~~agllf~m~------------~t~~Iw~~Y 330 (433)
T KOG3810|consen 263 EVAPNPANVYNGAVEAVSTLLGAIAALAAGYLNINWNRWGDLLLAVGSAVQAGLLFIMA------------QTQHIWVCY 330 (433)
T ss_pred hhCCCchhhhcCHHHHHHHHHHHHHHHHHHheeeccchhhHHHHHHHHHHhhhhhhhhh------------cccceehhh
Confidence 65311 1223444556667777888888888766666644443333222222222211 333344444
Q ss_pred HHHHHHHHhhhccccccccccccccccccchhhhHHHHHHHHHHHHHHHH
Q 012002 340 IMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIA 389 (473)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 389 (473)
....++...+..... +...-+++....+.-|...|+...+.-+-..+..
T Consensus 331 a~yvlfr~~y~l~it-iA~~~iA~nL~~e~~gLvFGiNTFvAl~lQsilT 379 (433)
T KOG3810|consen 331 AGYVLFRVIYQLTIT-IATFQIARNLSSELFGLVFGINTFVALILQSILT 379 (433)
T ss_pred hhHHHHHhhHhhhhh-HHHHHHHHhhhhhhheeeeehHHHHHHHHHHhhe
Confidence 444555444444332 2222223444556667777777666555444433
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.02 E-value=2.2e-09 Score=96.54 Aligned_cols=152 Identities=13% Similarity=0.147 Sum_probs=131.4
Q ss_pred CCcccCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhh
Q 012002 22 SNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVAAQNLAMLIVGRILLGCGVGFAN 101 (473)
Q Consensus 22 ~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~l~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~ 101 (473)
++++|++..++.++.-...+..+++++++|+|.||+|.|+++..+.++..+.++..-+...-..+.++-.+.|...|+.+
T Consensus 280 ~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~~~~~~f~i~gll~g~s~G~~q 359 (438)
T COG2270 280 AADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFLEGELDFWILGLLVGTSLGGAQ 359 (438)
T ss_pred HHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHccccHHHHHHHHHHHHhcchHH
Confidence 45889999999999999999999999999999999999999999999999999988888877788888899999999999
Q ss_pred hhhhHHHhhcCCCCCchhhHHHHHHHHHHHHHHHHHHhhhccccCCccchHHHHHhhhHHHHHHHHHhhcccCC
Q 012002 102 QAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVGSLLVTDT 175 (473)
Q Consensus 102 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~ 175 (473)
..+.++.++..|+++-++.+|+++...-.+..+||.+-.......+ +-|.-+....++.++.+++.+.+|++
T Consensus 360 A~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg--~~r~g~~~i~vll~iGl~~L~~v~~~ 431 (438)
T COG2270 360 ASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITG--SSRAGVLSIIVLLLIGLLLLLRVKVP 431 (438)
T ss_pred HHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhc--chhhHHHHHHHHHHhhHhhEEeecCC
Confidence 9999999999999999999999999999999999998544444443 36666666666666666666666653
|
|
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.7e-09 Score=101.42 Aligned_cols=145 Identities=15% Similarity=0.051 Sum_probs=97.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCcchhHhHHhHHHHHHHHHHHHHHhhhhccCCcccchhhHHHHHHHHHHHHHhhh
Q 012002 271 LYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFA 350 (473)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (473)
+...+...+++++|++..++++||+|||..+.+..++..++.++...... .....+.++.-++.+...+
T Consensus 63 S~~vs~f~iG~~~Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~-----------~~~~e~li~GR~i~Gl~~g 131 (485)
T KOG0569|consen 63 SLIVSIFFIGGMIGSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSKS-----------APSFEMLILGRLIVGLACG 131 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHH-----------hhhHHHHHHHHHHHHHHhH
Confidence 34567788999999999999999999999998888877777776666532 1122222222222222222
Q ss_pred ccccccccccccccccccchhhhHHHHHHHHHHHHHHHHHHH-HHHhhhh-hhhHHHHHHHHHHHHHHHHHhhccCCCC
Q 012002 351 WSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAF-LSMLCHF-KFGIFLFFSGWVLIMSCFVFFLLPETKN 427 (473)
Q Consensus 351 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (473)
... .....+..|..|++.||....+......+|..++..+. ..+.++. .|...+.+..+..+...+...++||..+
T Consensus 132 l~~-~~~pmyl~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~l~~l~~~PESPk 209 (485)
T KOG0569|consen 132 LST-GLVPMYLTEISPKNLRGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPLIPALLQLALLPFLPESPK 209 (485)
T ss_pred HHH-HHHHHHHhhcChhhhccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCCcc
Confidence 222 24456778999999999998888888888887774443 3344333 3555566666666777777888888654
|
|
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.02 E-value=3e-09 Score=93.93 Aligned_cols=147 Identities=16% Similarity=0.003 Sum_probs=104.1
Q ss_pred CCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHhHHhHHHHHHHHHHHHHHhhhhccCCcccchhhHHHHHHHHH
Q 012002 264 GFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKDHSEDLHTGFAVLVVIMIC 343 (473)
Q Consensus 264 g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (473)
+-+..-+|.+-+.+++..++.++..|.++||+|||.++.++.+..++...+.+..- ....++..=
T Consensus 64 ~~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~---------------~F~afv~aR 128 (451)
T KOG2615|consen 64 GASVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSR---------------NFAAFVLAR 128 (451)
T ss_pred cccchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHH
Confidence 33556788899999999999999999999999999999999888888766666532 122222222
Q ss_pred HHHHhhhccccccccccccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHhh---hhhhhHHHH---HHHHHHHH-HH
Q 012002 344 TFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLC---HFKFGIFLF---FSGWVLIM-SC 416 (473)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~---~~~~~~~~-~~ 416 (473)
+..+.+- +...+..++++|+++++.|+.+++..+....+|.+++|.++|.+.. ..+...+.. +..+.... ..
T Consensus 129 ~l~Gi~k-gnl~v~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g~~p~alP~~~v~i~a~~~v~ 207 (451)
T KOG2615|consen 129 FLGGIFK-GNLSVIRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSSISGSYPFALPCLLVFILAAGDVT 207 (451)
T ss_pred Hhhhhcc-CchHHHHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHhhHhhhccCchHHHHHHHHHHHHHHHH
Confidence 3333333 3334667889999999999999999999999999999999999877 333222221 22222222 34
Q ss_pred HHHhhccCCC
Q 012002 417 FVFFLLPETK 426 (473)
Q Consensus 417 ~~~~~~~~~~ 426 (473)
...+++|||-
T Consensus 208 ~~~~~lpETL 217 (451)
T KOG2615|consen 208 FFPWFLPETL 217 (451)
T ss_pred HHHHhCCccc
Confidence 4566778763
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=2.1e-08 Score=95.99 Aligned_cols=150 Identities=6% Similarity=-0.076 Sum_probs=104.5
Q ss_pred HHHHHHHHHhhcchhHHHHHhHHHHHHHcCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHhHHhHHHHHHHHH
Q 012002 235 VIAVALQIFQQCTGINAIMFYAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTV 314 (473)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~ 314 (473)
+..+.+.++.............|.+.+++|.++.+.++..+...++..++.+..|++.||+|||+.+..+..+..++.++
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~~~~l 107 (438)
T PRK10133 28 FALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAAL 107 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHH
Confidence 34444455555555667777889887889999999999999999999999999999999999999999998888888766
Q ss_pred HHHHHhhhhccCCcccchhhHHHHHHHHHHHHHhhhccccccccccccccccccchhhhHHHHHHHHHHHHHHHHHHHHH
Q 012002 315 IAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLS 394 (473)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (473)
..... ...+.+..+....+.+.+.+.. .+....++.|..|++.+...+++.+....+|..+++.+.+.
T Consensus 108 ~~~~~-----------~a~~~~~ll~~r~l~G~g~g~~-~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~ 175 (438)
T PRK10133 108 FWPAA-----------EIMNYTLFLVGLFIIAAGLGCL-ETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQS 175 (438)
T ss_pred HHHHH-----------hcCCHHHHHHHHHHHHHHHHHH-HhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 53221 0111222222222222222222 23334455677666666667889999999999999888765
Q ss_pred Hh
Q 012002 395 ML 396 (473)
Q Consensus 395 ~~ 396 (473)
+.
T Consensus 176 l~ 177 (438)
T PRK10133 176 LI 177 (438)
T ss_pred HH
Confidence 43
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=99.01 E-value=7.3e-09 Score=96.75 Aligned_cols=162 Identities=12% Similarity=0.107 Sum_probs=105.8
Q ss_pred HHHHHhHHHHHHHcCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhc-----CcchhH-hHHhHHHHHHHHHHHHHHhhhh
Q 012002 250 NAIMFYAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKV-----GRRMLL-LEAGIQMFLSQTVIAIILGIKV 323 (473)
Q Consensus 250 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-----~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 323 (473)
.......|.+.++.|+|..+.+..... .+...+ .++.|+++||+ ||||.+ ..+.+..++....+.+..
T Consensus 5 ~~~~~~~~~~~~~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~---- 78 (356)
T TIGR00901 5 GLVGNTLPYWLRSKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLV---- 78 (356)
T ss_pred hhHHhHHHHHHHHcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCC----
Confidence 345556788889999999999888644 444444 88999999998 788875 444444444444443220
Q ss_pred ccCCcccchhhHHHHHHHHHHHHHhhhccccccccccccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhh---
Q 012002 324 KDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHFK--- 400 (473)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 400 (473)
+....+... ...+..........+...+++.|.+|+++|+.+.++......+|..+++.+.+.+....+
T Consensus 79 -------~~~~l~~l~-~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~ 150 (356)
T TIGR00901 79 -------PSTDLPLLA-GLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANT 150 (356)
T ss_pred -------cchhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhccccc
Confidence 111122222 222222233333334556677899999999999999999999999999999998887776
Q ss_pred -----hhHHHHHHHHHHHHHHHHHhh-ccCC
Q 012002 401 -----FGIFLFFSGWVLIMSCFVFFL-LPET 425 (473)
Q Consensus 401 -----~~~~~~~~~~~~~~~~~~~~~-~~~~ 425 (473)
+...+.+.++..+...+..++ .+|+
T Consensus 151 ~~~~~wr~~f~i~ai~~l~~~~~~~~~~~e~ 181 (356)
T TIGR00901 151 GLITLWGYIFFWTALLILPGLLVTLFLAKEP 181 (356)
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 666666666655555544443 4553
|
|
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=99.01 E-value=2.2e-09 Score=85.31 Aligned_cols=134 Identities=16% Similarity=0.081 Sum_probs=89.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCcchhHhHHhHHHHHHHHHHHHHHhhhhccCCcccchhhHHHHHHHHHHHHHhhhcccc
Q 012002 275 VITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWG 354 (473)
Q Consensus 275 ~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (473)
+...++.+++.+..+++.||++||+.+..+.....++....... . ..+.......+.. .......
T Consensus 5 ~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~------------~--~~~~~~~~~~~~g-~~~~~~~ 69 (141)
T TIGR00880 5 AGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALS------------S--NITVLIIARFLQG-FGAAFAL 69 (141)
T ss_pred EeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHh------------c--cHHHHHHHHHHHH-HHHHHHH
Confidence 34567788999999999999999999888777666665554432 1 1122222222222 2222223
Q ss_pred ccccccccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHH-HHHHHHHHhhcc
Q 012002 355 PLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHFKFGIFLFFSGWV-LIMSCFVFFLLP 423 (473)
Q Consensus 355 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 423 (473)
+....+..|.+|++.|+++.++.+....++..+++.+.+.+.+..++...+...... .+..+...+..|
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (141)
T TIGR00880 70 VAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFLLP 139 (141)
T ss_pred HhHHHHHHHHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhhcCC
Confidence 455677789999999999999999999999999999999998877765544444333 333333443333
|
|
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=99.00 E-value=5e-08 Score=89.17 Aligned_cols=136 Identities=13% Similarity=0.103 Sum_probs=99.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhhhhhhHHHh
Q 012002 30 QGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVAAQNLAMLIVGRILLGCGVGFANQAVPLFLS 109 (473)
Q Consensus 30 ~~~~~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~l~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~ 109 (473)
-..+.+.-+-.+...+..+.+.+..+|+..+.=..++..++.++.++.+++++.+.=+++-++.+++.|........+..
T Consensus 59 ~~t~~Vlladi~P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~~~v~~~l~Gv~las~ssg~GE~tfL~lt~ 138 (402)
T PF02487_consen 59 VSTGAVLLADILPSLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAFSPSVWVRLLGVVLASLSSGLGEVTFLSLTH 138 (402)
T ss_pred ccchHHHHHHHHHHHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhheeeccchhHHHHHHHHHhhhhhhhHHHHHHHHH
Confidence 33455666666777777788888999987666666677788889999999999999999999999999988888888755
Q ss_pred hcCCCCCchhhHHHHHHHHHHHHHHHHHHhhhccccCCccchHHHHHhhhHHHHHHHHHhhcc
Q 012002 110 EIAPTRIRGGLNILFQLNVTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVGSLLV 172 (473)
Q Consensus 110 ~~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~ 172 (473)
.+++ ...+.+.++.+.+.++|+..-..+.. -..+-|..+.+...+.++..+.++++
T Consensus 139 -~y~~----~~l~~wssGTG~aGl~Ga~~y~~lT~--~g~s~~~tll~~~~lp~~~~~~~f~~ 194 (402)
T PF02487_consen 139 -FYGK----SSLSAWSSGTGGAGLVGALYYLGLTT--LGLSPRTTLLIMLVLPAIFLLSYFFL 194 (402)
T ss_pred -hcCc----cccccccCCcChhhHHHHHHHHHHHH--hCcCHHHHHHHHHHHHHHHHHHHHHh
Confidence 4543 35688888888888888877443333 12445777777776665555554443
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.97 E-value=2.3e-08 Score=108.25 Aligned_cols=131 Identities=11% Similarity=0.054 Sum_probs=91.5
Q ss_pred HHHHHHHcCCCCc--chHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHhHHhHHHHHHHHHHHHHHhhhhccCCcccchh
Q 012002 256 APVLFKTLGFGGS--ASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKDHSEDLHTG 333 (473)
Q Consensus 256 ~~~~~~~~g~~~~--~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (473)
.+.+...++.+.. ..++..++..++.+++.+++|+++||+|||+++..+.++..+..++..+... . .
T Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~----------~-~ 101 (1146)
T PRK08633 33 QNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYY----------L-G 101 (1146)
T ss_pred HHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHH----------H-c
Confidence 3344444554433 3567777888889999999999999999999998877665555444433221 1 1
Q ss_pred hHHHHHHHHHHHHHhhhccccccccccccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 012002 334 FAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCH 398 (473)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (473)
..+. +++..++.+.......+...+++.|.+|++.|+.++|+......+|..+++.+.+.+.+.
T Consensus 102 ~~~~-l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~ 165 (1146)
T PRK08633 102 WFWL-AFAVTFLLGAQSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFES 165 (1146)
T ss_pred cHHH-HHHHHHHHHHHHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1222 222223333334444566677889999999999999999999999999999999988765
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.5e-08 Score=94.51 Aligned_cols=133 Identities=11% Similarity=-0.011 Sum_probs=94.2
Q ss_pred HHHHHhHHHHHHHcCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHhHHhHHHHHHHHHHHHHHhhhhccCCcc
Q 012002 250 NAIMFYAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKDHSED 329 (473)
Q Consensus 250 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (473)
.......|.+.+++|++..+.++..+...++..++.++.|+++||+|||+.+..+.....++.+.. ..
T Consensus 17 ~~~~~~lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~----------- 84 (355)
T TIGR00896 17 TSVGPLLPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SA----------- 84 (355)
T ss_pred ccCcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-Hh-----------
Confidence 344557788889999999999999999999999999999999999999999988776655554433 11
Q ss_pred cchhhHHHHHHHHHHHHHhhhccccccccccccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 012002 330 LHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHF 399 (473)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (473)
++ .+..+....+...+... ..+....+..|.+| ++|+++.++.+....+|..+++.+.+.+.+..
T Consensus 85 -~~--~~~l~~~~~~~g~g~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~ 149 (355)
T TIGR00896 85 -PG--TALLFAGTALIGVGIAI-INVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHS 149 (355)
T ss_pred -cc--HHHHHHHHHHHHHHHHH-HhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 11 11222222222221111 11233345567776 57999999999999999999999888887664
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=98.94 E-value=5e-08 Score=92.63 Aligned_cols=157 Identities=13% Similarity=0.010 Sum_probs=99.2
Q ss_pred HHHHHHhhcchhHHHHHhHHHHHHHcCCCCcchHHHHHHHHHHHHHHHHHHHHHHh----hcCcchhHhHHh-HHHHHHH
Q 012002 238 VALQIFQQCTGINAIMFYAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVD----KVGRRMLLLEAG-IQMFLSQ 312 (473)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d----~~~~~~~~~~~~-~~~~~~~ 312 (473)
.....+.....+.....+.+.++++.|.+....+.+.....+.+++..++.|+++| |+|||+.+.... ....++.
T Consensus 9 ~~~~~~Giq~~~~l~~~~l~~yl~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l 88 (477)
T TIGR01301 9 VASVAAGVQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAV 88 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHH
Confidence 33334444455666777777888899999999999999999999999999999999 599999988753 3334443
Q ss_pred HHHHHHHhhhh--ccCCcccchhh-HHHHHHHHHHHHHhhhccccccccccccccccccch--hhhHHHHHHHHHHHHHH
Q 012002 313 TVIAIILGIKV--KDHSEDLHTGF-AVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETR--SAGQSVTVCVNLLFTFV 387 (473)
Q Consensus 313 ~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~--~~~~~~~~~~~~~~~~~ 387 (473)
.++........ ....+...... .+..+....+.......... ...++++|..|+++| +.+.++.+....+|+.+
T Consensus 89 ~ll~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~-p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~il 167 (477)
T TIGR01301 89 ILIGFAADIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQG-PCRAFLADLTGGDARRTRIANAYFSFFMAIGNVL 167 (477)
T ss_pred HHHHhCchhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHH-HHHHhcccccCchhHHHHHHHHHHHHHHHHHHHH
Confidence 44333211000 00000000001 11222222222223332222 345778999998865 57899999999999999
Q ss_pred HHHHHHHH
Q 012002 388 IAQAFLSM 395 (473)
Q Consensus 388 ~~~~~~~~ 395 (473)
++.+.+..
T Consensus 168 g~~~g~~~ 175 (477)
T TIGR01301 168 GYAAGAYS 175 (477)
T ss_pred HHHHHHHH
Confidence 98887754
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=98.93 E-value=5.7e-06 Score=78.28 Aligned_cols=124 Identities=9% Similarity=0.010 Sum_probs=93.7
Q ss_pred CCCCcccC-----CCchhHHHHHHHHHHHHHH-HHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHh----h--------
Q 012002 20 DDSNYCKY-----DNQGLQLFTSSLYLAGLTA-TFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVAA----Q-------- 81 (473)
Q Consensus 20 ~~~~~~~~-----s~~~~~~~~s~~~~~~~~~-~~~~g~l~Dr~Grr~~l~~~~~l~~i~~~~~~~~----~-------- 81 (473)
+++|.+.+ +.+.+.++-+...+...+. .++.+++++|++|++++-+....+....+++++. +
T Consensus 28 ~lKD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~ 107 (472)
T TIGR00769 28 DTKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHPTAL 107 (472)
T ss_pred hhhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCCcHH
Confidence 45666655 3357889999888877776 8999999999999999988877777777776665 1
Q ss_pred -------------------hHHHHHHHHHHHhhhhhhhhh-hhhHHHhhcCCCCCchhhHHHHHHHHHHHHHHHHHHhhh
Q 012002 82 -------------------NLAMLIVGRILLGCGVGFANQ-AVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYG 141 (473)
Q Consensus 82 -------------------~~~~l~~~r~l~G~~~~~~~~-~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~ 141 (473)
+.|...+.-+...+-...... .-..+++|.++.+|-.|..+++..+.++|.++++.+...
T Consensus 108 ~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~ 187 (472)
T TIGR00769 108 ADKLLSLLPPGFMGFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKY 187 (472)
T ss_pred HHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 133334444455555455554 777889999999999999999999999999999988444
Q ss_pred cc
Q 012002 142 TS 143 (473)
Q Consensus 142 ~~ 143 (473)
..
T Consensus 188 ~~ 189 (472)
T TIGR00769 188 FS 189 (472)
T ss_pred HH
Confidence 33
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.4e-08 Score=92.08 Aligned_cols=131 Identities=8% Similarity=0.008 Sum_probs=105.9
Q ss_pred cccCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhhhh
Q 012002 24 YCKYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVAAQNLAMLIVGRILLGCGVGFANQA 103 (473)
Q Consensus 24 ~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~l~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~ 103 (473)
.+|+++.+.++..+.+..+..++.+..+++.||+|+|+.+.++..+..++.++....++... ..+-++.|++.+..+|.
T Consensus 172 ~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~~~~~~~-~~~~~l~g~~~s~i~P~ 250 (310)
T TIGR01272 172 ALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGAALTHGYVA-MWFVLALGLFNSIMFPT 250 (310)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHHHHHHHH
Confidence 46899999999999999999999999999999999999999888888887766666554333 34566899999999999
Q ss_pred hhHHHhhcCCCCCchhhHHHHHHHHHHHHHHHHHHhhhccccCCccchHHHHHhhhH
Q 012002 104 VPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTSHIKSQWGWRISLGLAGI 160 (473)
Q Consensus 104 ~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~wr~~f~~~~~ 160 (473)
..+...+..|++ .+.+.++. ....+|.++.|++ .+.+.+..|.+..|++..+
T Consensus 251 ~~s~a~~~~~~~-~~~asai~-~~~~~Gg~i~P~l---~G~lad~~g~~~a~~v~~~ 302 (310)
T TIGR01272 251 IFSLALNALGRH-TSQGSGIL-CLAIVGGAIVPLL---QGSLADCLGIQLAFALPVP 302 (310)
T ss_pred HHHHHHhhhhhh-hhhhHHHH-HHHHhcchHHHHH---HHHHHHhccchHHHHHHHH
Confidence 999999888754 55666765 5566899999998 6666666788888874443
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=98.91 E-value=5.3e-09 Score=96.12 Aligned_cols=146 Identities=16% Similarity=0.199 Sum_probs=124.9
Q ss_pred cCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhhhhhh
Q 012002 26 KYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVAAQNLAMLIVGRILLGCGVGFANQAVP 105 (473)
Q Consensus 26 ~~s~~~~~~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~l~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~ 105 (473)
+.++...|.+.+...+.-++.-.+..++.+|+|.|+.++++..+.++=.++++++++.+.+.+.+.+.|+-.+.......
T Consensus 255 ~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~~~~~~i~~~klLH~~e~~l~lva~f 334 (412)
T PF01306_consen 255 GQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFATNPWVISLIKLLHALEFPLLLVAAF 334 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCCCCchhhHHHH-HHHHHHHHHHHHHHhhhccccCCccchHHHHHhhhHHHHHHHHHhhc-ccC
Q 012002 106 LFLSEIAPTRIRGGLNILF-QLNVTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVGSLL-VTD 174 (473)
Q Consensus 106 ~~i~~~~~~~~r~~~~~~~-~~~~~lG~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~-~~e 174 (473)
.|+++.+|+|-.++...+. +.+.++|.++.+.+ .+.+.++.|.+..|++.+.+.++..++..+ +++
T Consensus 335 kYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~---~G~lyd~~G~~~tylimg~iv~~~~li~~f~l~~ 402 (412)
T PF01306_consen 335 KYITAHFDKRLSATLYLVGFQFAKQIGIIILSPL---AGYLYDRIGFQHTYLIMGLIVLPFTLISAFTLKK 402 (412)
T ss_dssp HHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--
T ss_pred HHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhh---HHhhHhhcCcHHHHHHHHHHHHHHHHHheeeecC
Confidence 9999999988777777774 67888899988888 777778899999999999888777776444 444
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=98.91 E-value=2.8e-08 Score=85.36 Aligned_cols=175 Identities=13% Similarity=0.178 Sum_probs=117.5
Q ss_pred HHHHHhhcchhHHHHHhHHHHHHHcCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHhHHhHHHHHHHHHHHHH
Q 012002 239 ALQIFQQCTGINAIMFYAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAII 318 (473)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (473)
...........+.+..|.|.+.+++|+|..+...+.....++..+| +..|.+.|++|++.++.++.+...++...+...
T Consensus 8 ~~~v~~~~Gt~Y~Fs~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~G-~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~ 86 (250)
T PF06813_consen 8 SIWVQLCSGTTYTFSAYSPQLKSRLGYSQSQLNTLSTAGDIGSYFG-ILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLA 86 (250)
T ss_pred HHHHHHhcCcccchhhhhHHHHHHhCCCHHHHHHHHHHHHHHhhcc-HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444556788899999999999999999998888888888774 888999999999999999999999998888776
Q ss_pred HhhhhccCCcccchhhHHHHHHHHHHHHHhhhccc-cccccccccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 012002 319 LGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSW-GPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLC 397 (473)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (473)
.... .+....|.. +...+.+..+..+ .........+.+| ++||++.|+.-....+++.+...+...+.+
T Consensus 87 ~~~~-------i~~~~~~~~--~~~~~l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~f~ 156 (250)
T PF06813_consen 87 VSGR-------IPSLPVWLM--CLFLFLGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSAFFG 156 (250)
T ss_pred HhCc-------cCccchHHH--HHHHHHHcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHHHHcC
Confidence 5311 011122222 2222222222221 1222223346777 479999999999999999998888887776
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHhhccC
Q 012002 398 HFKFGIFLFFSGWVLIMSCFVFFLLPE 424 (473)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (473)
..........+....+++++...+++.
T Consensus 157 ~~~~~fll~la~~~~~v~l~~~~~vr~ 183 (250)
T PF06813_consen 157 DDPSSFLLFLAVLPAVVCLVAMFFVRP 183 (250)
T ss_pred CChHHHHHHHHHHHHHHHHHHhhheec
Confidence 643444444444444445555455443
|
|
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.90 E-value=7.5e-09 Score=99.37 Aligned_cols=152 Identities=16% Similarity=0.148 Sum_probs=135.8
Q ss_pred CCCCCcccCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhh--hHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhh
Q 012002 19 GDDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRRLG--RRLTMLIAGIFFIAGVAFNVAAQNLAMLIVGRILLGCG 96 (473)
Q Consensus 19 ~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~Dr~G--rr~~l~~~~~l~~i~~~~~~~~~~~~~l~~~r~l~G~~ 96 (473)
|+..++.+.++.+.+.+.++..+...++.+..|+++|+.. ++.+..+++++.+++.+.++++++++.+...-.+.|++
T Consensus 322 ~~~~~~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~~~~p~~~~~~~l~~~~~~fG~~ 401 (509)
T KOG2504|consen 322 PSYAKSLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLARLFLPFATTYVGLIVFSILFGFC 401 (509)
T ss_pred HHHHhhcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 3445577999999999999999999999999999999988 56677889999999999999999999999999999999
Q ss_pred hhhhhhhhhHHHhhcCCCCCchhhHHHHHHHHHHHHHHHHHHhhhccccCCccc-hHHHHHhhhHHHHHHHHHhhccc
Q 012002 97 VGFANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTSHIKSQWG-WRISLGLAGIPAALLTVGSLLVT 173 (473)
Q Consensus 97 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~-wr~~f~~~~~~~~~~~~~~~~~~ 173 (473)
.|.........+.|..+.++-..+.|+.....+++.++||++ .+.+.+..+ |...|+..++..++...+++..+
T Consensus 402 ~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPi---ag~~~d~tg~Y~~~f~~~g~~~~~s~~~~~~~~ 476 (509)
T KOG2504|consen 402 VGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPI---AGLLYDITGNYDHAFYFCGLCFLLSAVLLLILR 476 (509)
T ss_pred HHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCccc---ceeeeeccCCeeeehhhcChHHHHHHHHHHHhH
Confidence 999988888899999999999999999999999999999999 445555444 99999999999888887777665
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=4.4e-08 Score=94.45 Aligned_cols=119 Identities=13% Similarity=0.121 Sum_probs=96.7
Q ss_pred CCcccCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhh--hHHHHHHHHHHHhhhhhh
Q 012002 22 SNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVAAQ--NLAMLIVGRILLGCGVGF 99 (473)
Q Consensus 22 ~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~l~~i~~~~~~~~~--~~~~l~~~r~l~G~~~~~ 99 (473)
++.+|.+....++......++..++.++++++.||+|+|+++.++.++.+++.++..+.+ +++.+++..++.|+|.+.
T Consensus 256 ~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~l~g~G~~~ 335 (448)
T PRK09848 256 RYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVSVWSLPVALVALAIASIGQGV 335 (448)
T ss_pred eeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHH
Confidence 445666655555555555677888999999999999999999999999888888777653 677777788899999999
Q ss_pred hhhhhhHHHhhcCCCC-------CchhhHHHHHHHHHHHHHHHHHHhh
Q 012002 100 ANQAVPLFLSEIAPTR-------IRGGLNILFQLNVTIGILFANLVNY 140 (473)
Q Consensus 100 ~~~~~~~~i~~~~~~~-------~r~~~~~~~~~~~~lG~~~~~~~~~ 140 (473)
..+...++.+|..|.+ ++|..++..+....+|..+++.+..
T Consensus 336 ~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g 383 (448)
T PRK09848 336 TMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPA 383 (448)
T ss_pred HHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999988654 3588899999999999999887744
|
|
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.88 E-value=3e-08 Score=90.69 Aligned_cols=135 Identities=29% Similarity=0.385 Sum_probs=113.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhh--HHHHHHHHHHHhhhhhhhhhhhhHH
Q 012002 30 QGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVAAQN--LAMLIVGRILLGCGVGFANQAVPLF 107 (473)
Q Consensus 30 ~~~~~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~l~~i~~~~~~~~~~--~~~l~~~r~l~G~~~~~~~~~~~~~ 107 (473)
.+.++..+.+.++..++.++.|.++||+|||+.+..+.....++.+++++..+ .+.+++.|+++|++.+...+....+
T Consensus 39 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 118 (338)
T COG0477 39 LLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPNVGLALLLILRLLQGLGGGGLLPVASAL 118 (338)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 57899999999999999999999999999998888888776777777777776 8999999999999999999999999
Q ss_pred HhhcCCC-CCchhhHHHHHH-HHHHHHHHHHHHhhhccccCCccchHHHHHhhhHHHHHH
Q 012002 108 LSEIAPT-RIRGGLNILFQL-NVTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALL 165 (473)
Q Consensus 108 i~~~~~~-~~r~~~~~~~~~-~~~lG~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~ 165 (473)
+.|+.|+ ++|+...+.... ...+|..+++.++...... ...+||..|.+........
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 177 (338)
T COG0477 119 LSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGA-LLWGWRAAFLLAALLGLLL 177 (338)
T ss_pred HHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcchHHHHHHHHHHHHHH
Confidence 9999987 678888888888 5888888888775544444 5568999766666555433
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.84 E-value=4.5e-08 Score=90.36 Aligned_cols=177 Identities=14% Similarity=0.134 Sum_probs=133.3
Q ss_pred HHHHHHHHHhhcchhHHHHHhHHHHHH-HcC----CCCcchHHHHHHHHHHHHHHHHHHHHHHhh-cCcchhHhHHhHHH
Q 012002 235 VIAVALQIFQQCTGINAIMFYAPVLFK-TLG----FGGSASLYSTVITGAVNVLSTLVSIYSVDK-VGRRMLLLEAGIQM 308 (473)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g----~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~~~~~~~~~~~~~~ 308 (473)
++.++..-+.--+.++++...+..|+. +.+ ++.+++..+...+....-+..+++||++|| +|+|+.+..+.+++
T Consensus 23 l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~ 102 (498)
T COG3104 23 LYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILM 102 (498)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 556666666677777777777666664 355 999888888888888888889999999999 59999999999999
Q ss_pred HHHHHHHHHHHhhhhccCCcccchhhHHHHHHHHHHHHHhhhcccccccccccccccccc--chhhhHHHHHHHHHHHHH
Q 012002 309 FLSQTVIAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLE--TRSAGQSVTVCVNLLFTF 386 (473)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~~~~~~~~~~~~~~~ 386 (473)
.++.+++..... .....+ .+.+.... ......-+....+..|++|++ .|-.+.++..+..++|+.
T Consensus 103 ~iGh~~L~~~~~-----------~~~~gl-~i~L~~I~-iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl 169 (498)
T COG3104 103 AIGHLVLAISSV-----------SGPGGL-YIGLALII-VGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSL 169 (498)
T ss_pred HHHHHHHhcccc-----------ccccHH-HHHHHHHH-hccccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHH
Confidence 999998887410 111111 22222222 333344456667778998764 467788888888999999
Q ss_pred HHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhccC
Q 012002 387 VIAQAFLSMLCHFKFGIFLFFSGWVLIMSCFVFFLLPE 424 (473)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (473)
++|.+.+++.++.++...+..+++....+++.+...++
T Consensus 170 ~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f~~~~r 207 (498)
T COG3104 170 IAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFLLGRR 207 (498)
T ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHccc
Confidence 99999999999999999999999999888888877654
|
|
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.82 E-value=8.3e-09 Score=91.72 Aligned_cols=147 Identities=14% Similarity=0.080 Sum_probs=112.7
Q ss_pred cCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHhHHhHHHHHHHHHHHHHHhhhhccCCcccchhhHHHHHHHH
Q 012002 263 LGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKDHSEDLHTGFAVLVVIMI 342 (473)
Q Consensus 263 ~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (473)
.+-+..+.|+++....+.+++.+.+.|.+.||+|+|..+.++...+..+.+++++.- .. ++.++.=
T Consensus 101 ~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~-------------sy-~~l~vAR 166 (464)
T KOG3764|consen 101 LDRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGN-------------SY-PMLFVAR 166 (464)
T ss_pred ccccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcc-------------hh-HHHHHHH
Confidence 455678899999999999999999999999999999999999999999988888742 11 1222222
Q ss_pred HHHHHhhhccccccccccccccccccc-hhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhh
Q 012002 343 CTFISAFAWSWGPLGWLIPSETFPLET-RSAGQSVTVCVNLLFTFVIAQAFLSMLCHFKFGIFLFFSGWVLIMSCFVFFL 421 (473)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (473)
...+...........+++++.+|.+. |++++|+...+..+|-.++|++.|.+++..|+...+.+.++..+.-..+.++
T Consensus 167 -~LQgvgsA~~~tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~ 245 (464)
T KOG3764|consen 167 -SLQGVGSAFADTSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLL 245 (464)
T ss_pred -HHhhhhHHHHHhhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHh
Confidence 22222222333455677889999865 7999999999999999999999999999999888777766666655555544
Q ss_pred ccC
Q 012002 422 LPE 424 (473)
Q Consensus 422 ~~~ 424 (473)
+-+
T Consensus 246 vi~ 248 (464)
T KOG3764|consen 246 VIE 248 (464)
T ss_pred eeC
Confidence 433
|
|
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.79 E-value=7.3e-08 Score=91.44 Aligned_cols=146 Identities=12% Similarity=0.029 Sum_probs=111.6
Q ss_pred HcCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHhHHhHHHHHHHHHHHHHHhhhhccCCcccchhhHHHHHHH
Q 012002 262 TLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKDHSEDLHTGFAVLVVIM 341 (473)
Q Consensus 262 ~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (473)
++.++..+-+++.+....+.+++.+..+++.||+|-|+++..+.++.+++.++...... ...+ .++.
T Consensus 67 ~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~------------~~~~-~~~~ 133 (466)
T KOG2532|consen 67 EYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAAS------------IGFY-LLLV 133 (466)
T ss_pred eecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHH------------hcch-hhHH
Confidence 36778888899999999999999999999999999999999999999999888888652 1122 2233
Q ss_pred HHHHHHhhhccccccccccccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhh-hhhhHHHHHHHHHHHHHHHHHh
Q 012002 342 ICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCH-FKFGIFLFFSGWVLIMSCFVFF 420 (473)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 420 (473)
.=++.+.......|....+.++-.|+++|++..++.....++|..++-++.|.+-+. .||...+.+.+...++..++++
T Consensus 134 ~R~lqGl~~g~~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~ 213 (466)
T KOG2532|consen 134 LRFLQGLGQGVLFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWF 213 (466)
T ss_pred HHHHhHHHHhHHHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHH
Confidence 333333333344456667778999999999999999999999999999999999988 7776555544444444334333
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=98.77 E-value=7.4e-08 Score=92.82 Aligned_cols=152 Identities=9% Similarity=0.006 Sum_probs=118.1
Q ss_pred CcccCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHh----------hhHHHHHHHHHH
Q 012002 23 NYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVAA----------QNLAMLIVGRIL 92 (473)
Q Consensus 23 ~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~l~~i~~~~~~~~----------~~~~~l~~~r~l 92 (473)
+.+|+++.+.|.+.+...++..++....+++.+|++.|+++.++.++.+++.+..... ++.+.++..-++
T Consensus 281 ~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l 360 (468)
T TIGR00788 281 QCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSII 360 (468)
T ss_pred ccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhHH
Confidence 4689999999999999999999999999999999999999999999999888664311 344455667889
Q ss_pred HhhhhhhhhhhhhHHHhhcCCCCCchhhHHHHHHHHHHHHHHHHHHhhhccccC----CccchHHHHHh-hhHHHHHHHH
Q 012002 93 LGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTSHIK----SQWGWRISLGL-AGIPAALLTV 167 (473)
Q Consensus 93 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~----~~~~wr~~f~~-~~~~~~~~~~ 167 (473)
.+++.+..+.+...++.+..|+++++...++..+..++|..+++.++....... ++++.++...+ +.+..++...
T Consensus 361 ~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g~~~~~~~~~~~~i~i~~~~~l~~l~ 440 (468)
T TIGR00788 361 AEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETIGITCDNSNNLWLLILGHSLAPLLPLP 440 (468)
T ss_pred HHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999998755443322 22333333322 3333333344
Q ss_pred HhhcccC
Q 012002 168 GSLLVTD 174 (473)
Q Consensus 168 ~~~~~~e 174 (473)
..+++|+
T Consensus 441 ~~~llP~ 447 (468)
T TIGR00788 441 LLHLLPR 447 (468)
T ss_pred HHHhCCC
Confidence 4456775
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.70 E-value=3.5e-08 Score=89.50 Aligned_cols=123 Identities=15% Similarity=0.173 Sum_probs=95.1
Q ss_pred cCCCCCcccCCCchhHHHHHHHHHHHHHHHHHHHHhhh----hhhhHHHH-HHHHHHHHHHHHHHHHhhhHH--------
Q 012002 18 QGDDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTR----RLGRRLTM-LIAGIFFIAGVAFNVAAQNLA-------- 84 (473)
Q Consensus 18 ~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~D----r~Grr~~l-~~~~~l~~i~~~~~~~~~~~~-------- 84 (473)
.++...++|++....+.+--...+...+.+++.|..+| |+||||.+ ..+..+..++.++..++.++.
T Consensus 55 ~tPyl~~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~Lig~aaDig~~lgd~~~ 134 (498)
T KOG0637|consen 55 LTPYLQSLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIAVSLFLIGYAADIGLLLGDNER 134 (498)
T ss_pred ccHHHHHcCCCcccccccccccccccceecccccccccccccccccccchHHHhhHHHHHHHhhhhhHhhhhHHhcCCcc
Confidence 34445566888888888888888999999999999999 48987655 556666777777777775442
Q ss_pred ---------HHHHHHHHHhhhhhhhhhhhhHHHhhcCCCCCchh-hHHHHHHHHHHHHHHHHHHhh
Q 012002 85 ---------MLIVGRILLGCGVGFANQAVPLFLSEIAPTRIRGG-LNILFQLNVTIGILFANLVNY 140 (473)
Q Consensus 85 ---------~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~-~~~~~~~~~~lG~~~~~~~~~ 140 (473)
.++++--+.=++.-.....+.+++.|...+++|.+ +++.+....++|..+|..++.
T Consensus 135 ~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnvLGY~~g~ 200 (498)
T KOG0637|consen 135 KPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAVGNVLGYALGS 200 (498)
T ss_pred cccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHhcceeeeeccc
Confidence 34444555556777788899999999997766666 999999999999999988843
|
|
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.70 E-value=9.1e-08 Score=94.18 Aligned_cols=147 Identities=10% Similarity=0.083 Sum_probs=107.3
Q ss_pred HcCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHhHHhHHHHHHHHHHHHHHhhhhccCCcccchhhHHHHHHH
Q 012002 262 TLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKDHSEDLHTGFAVLVVIM 341 (473)
Q Consensus 262 ~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (473)
....+.....+..++..++.++|.++.|.++||+|||+++..+.++..++.+..++.. .......
T Consensus 112 ~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~---------------~~~~~~~ 176 (521)
T KOG0255|consen 112 LVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAP---------------NYWMFLI 176 (521)
T ss_pred eeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhC---------------cHHHHHH
Confidence 3555667777888999999999999999999999999999999998888886666542 2223333
Q ss_pred HHHHHHhhhccccccccccccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhh
Q 012002 342 ICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHFKFGIFLFFSGWVLIMSCFVFFL 421 (473)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (473)
.=++.+.+..+...+.+.+..|.++++.|+.+..+ ......++.+++...+++.. +|........+..+..++.+++
T Consensus 177 ~Rfl~G~~~~~~~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~Wr~~~~~~~~~~~~~~~~~~l 253 (521)
T KOG0255|consen 177 FRFLSGFFGSGPLTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR--DWRWLFWIISIPSGLFLLLWFL 253 (521)
T ss_pred HHHHHHhhccchhHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHHHHc
Confidence 44444445555556777888999999999999999 88888889999999888887 3444444444444444444555
Q ss_pred ccCCC
Q 012002 422 LPETK 426 (473)
Q Consensus 422 ~~~~~ 426 (473)
.+|.+
T Consensus 254 ~~Es~ 258 (521)
T KOG0255|consen 254 PPESP 258 (521)
T ss_pred cCcCh
Confidence 55644
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.4e-06 Score=78.36 Aligned_cols=144 Identities=8% Similarity=-0.109 Sum_probs=105.3
Q ss_pred HHhhcchhHHHHHhHHHHHHHcCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHhHHhHHHHHHHHHHHHHHhh
Q 012002 242 IFQQCTGINAIMFYAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGI 321 (473)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (473)
++.............|.+.+.++.+..+++++......+..+.++..+++.+|+|+|+-+..+..++++++.++.....
T Consensus 22 Ffl~G~~~~l~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~pAa~- 100 (422)
T COG0738 22 FFLWGFITCLNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPAAS- 100 (422)
T ss_pred HHHHHHHhhcchhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhh-
Confidence 3333334445556778888889999999999999999999999999999999999999999999999999988875431
Q ss_pred hhccCCcccchhhHHHHHHHHHHHHHhhhccccccccccccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 012002 322 KVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLC 397 (473)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (473)
.......+...+....+ ....-.....++..+.|++....-+.+.+.++.+|..++|.+.+.+..
T Consensus 101 ----------~~~y~~FL~~lFila~G-i~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lil 165 (422)
T COG0738 101 ----------SKSYGFFLVALFILASG-IGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLIL 165 (422)
T ss_pred ----------hhhHHHHHHHHHHHHhh-hHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 11111111111111111 111122344566677788778888899999999999999999998877
|
|
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.6e-07 Score=85.43 Aligned_cols=118 Identities=14% Similarity=0.047 Sum_probs=82.7
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHhHHhHHHHHHHHHHHHHHhhhhccCCcccchhhHHHHHHHHHH
Q 012002 265 FGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKDHSEDLHTGFAVLVVIMICT 344 (473)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (473)
+++...+.+.....++.++|++..|++.||+|||+++...++++.++.++.+...... +.....+.+.+.=+
T Consensus 81 ~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK~vYG~~liImIi~t~~~~~s~~~~--------~~~~~m~~L~~~R~ 152 (538)
T KOG0252|consen 81 YPSGVLALVNAAALVGTIFGQLFFGWLGDKFGRKKVYGKELIIMIICSALSGLSVGTT--------SPLGVMMTLCFFRF 152 (538)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHHHHhccCCCCC--------CCcchhhHHHHHHH
Confidence 4556677888888999999999999999999999999988888888877544432100 11122233333334
Q ss_pred HHHhhhccccccccccccccccccchhhhHHHHHHHHHHHHHHHHH
Q 012002 345 FISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQ 390 (473)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 390 (473)
+.+....+-.|+..++++|....+.||+-.+...+....|...+..
T Consensus 153 ~LGiGIGGDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~GilaG~i 198 (538)
T KOG0252|consen 153 LLGIGIGGDYPLSATIMSESANKKTRGAFIAAVFAMQGFGILAGGI 198 (538)
T ss_pred HhhccccCCCcchHHHhhhhhhhccccceeEEEEEecchhHhhccH
Confidence 4445555666888899999999999998877776665554444433
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=98.69 E-value=4.3e-07 Score=85.11 Aligned_cols=145 Identities=17% Similarity=0.304 Sum_probs=115.0
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHh-hhHHHHHH----HHHHHhhhhhhhh
Q 012002 27 YDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVAA-QNLAMLIV----GRILLGCGVGFAN 101 (473)
Q Consensus 27 ~s~~~~~~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~l~~i~~~~~~~~-~~~~~l~~----~r~l~G~~~~~~~ 101 (473)
.+....+.+.+...++-++.-...+++..|+|.|+++.++.+.+++=..+.+.. ++.+...+ ...++|+.-+..+
T Consensus 240 ~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~~~~~~~~~~~~l~q~lhG~tf~~~~ 319 (400)
T PF03825_consen 240 YSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFSDPWPFIVALQLLGQLLHGLTFGLFH 319 (400)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhhhhHHHHHHH
Confidence 567777888888888889999999999999999999999999999988888887 55544333 3456999999999
Q ss_pred hhhhHHHhhcCCCCCchhhHHHHHH-HHHHHHHHHHHHhhhccccCCcc------chHHHHHhhhHHHHHHHHHhh-ccc
Q 012002 102 QAVPLFLSEIAPTRIRGGLNILFQL-NVTIGILFANLVNYGTSHIKSQW------GWRISLGLAGIPAALLTVGSL-LVT 173 (473)
Q Consensus 102 ~~~~~~i~~~~~~~~r~~~~~~~~~-~~~lG~~~~~~~~~~~~~~~~~~------~wr~~f~~~~~~~~~~~~~~~-~~~ 173 (473)
.+...++.+..|++.|+++.+++++ ..++|..+|..++ +.+.+++ .|...+.+.+.+.++..+++. +++
T Consensus 320 ~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~ig---G~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~f~~~fk 396 (400)
T PF03825_consen 320 AASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIG---GWLYDAFGARGMFDWSAVFLVFAVMALVILVLFVILFK 396 (400)
T ss_pred HHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHH---HHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 9999999999999999999999876 4679999999994 4444433 355666666666666655543 344
Q ss_pred C
Q 012002 174 D 174 (473)
Q Consensus 174 e 174 (473)
|
T Consensus 397 ~ 397 (400)
T PF03825_consen 397 P 397 (400)
T ss_pred C
Confidence 4
|
|
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.68 E-value=3.7e-07 Score=76.79 Aligned_cols=314 Identities=13% Similarity=0.094 Sum_probs=163.8
Q ss_pred CCCCcccCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhh
Q 012002 20 DDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVAAQNLAMLIVGRILLGCGVGF 99 (473)
Q Consensus 20 ~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~l~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~ 99 (473)
.+-+.++....++|.+.-..+-...+...+.|.++|+.|||+.-+.-++.+.++++ .-.+++|-.++++|++-|++.+.
T Consensus 62 yLYstYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLsCi-TKhSpqYkVLmVGR~LGGiaTsL 140 (454)
T KOG4332|consen 62 YLYSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSCI-TKHSPQYKVLMVGRVLGGIATSL 140 (454)
T ss_pred eeehhcCccCCccceeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHHHH-hhcCCceEEEeehhhhhhHHHHH
Confidence 34456688889999888888888888999999999999999977666666555443 33568899999999999999998
Q ss_pred hhhhhhHH-HhhcCCCCCchhhHHHHHHHH----HHHHHHHHHHhhhc-cccCCc--cchHHHHHhhhHHHHHHH-HHhh
Q 012002 100 ANQAVPLF-LSEIAPTRIRGGLNILFQLNV----TIGILFANLVNYGT-SHIKSQ--WGWRISLGLAGIPAALLT-VGSL 170 (473)
Q Consensus 100 ~~~~~~~~-i~~~~~~~~r~~~~~~~~~~~----~lG~~~~~~~~~~~-~~~~~~--~~wr~~f~~~~~~~~~~~-~~~~ 170 (473)
.+.+.-++ ++|.-+ +|+.-.-+..... -+|.-+-.++++.. ..+.+. .|--.+|-..+....+.. ++.-
T Consensus 141 LFSaFEsWliaEHne--kr~FeqqWls~TFskA~ffgNglvAiiaGlfgn~lvd~~slGPVAPFdAAacfLaigmAvil~ 218 (454)
T KOG4332|consen 141 LFSAFESWLIAEHNE--KRGFEQQWLSVTFSKAVFFGNGLVAIIAGLFGNLLVDTFSLGPVAPFDAAACFLAIGMAVILS 218 (454)
T ss_pred HHHHHHHHHHHHhhh--ccCChHhhhhHHHHHHHHhhccHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHh
Confidence 88887765 556542 3332222222111 12222222222212 222221 233344443332222221 1111
Q ss_pred cccCChhhHHhhCChHHHHHHHHHHhCCCCchHHHHHHHHHHhhhhhcccchHHhhcccCchhHHHHHHHHHHhhcchhH
Q 012002 171 LVTDTPNSLIERGRFEEGKAVLRKIRGTDKIEPEFLELVEASRIAKEVKHPFRNLLKRRNRPQLVIAVALQIFQQCTGIN 250 (473)
Q Consensus 171 ~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (473)
-..| ..+++.|.+..+.+. +...+.+..+.+ +.+...+...+-...+.
T Consensus 219 ~W~E------Nygdps~~kdlltqf-----------------------~gaa~aiaSD~k---i~LLG~iqsLFE~smyt 266 (454)
T KOG4332|consen 219 SWSE------NYGDPSENKDLLTQF-----------------------KGAARAIASDEK---IALLGAIQSLFEGSMYT 266 (454)
T ss_pred hhhh------ccCChhhhHHHHHHh-----------------------hHhHHHHhcchH---HHHHHHHHHHHhhhhhe
Confidence 1111 122222221111111 112222332222 23333444444444444
Q ss_pred HHHHhHHHHHHHcCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCcc--hhHhHHhHHHHHHHHHHHHHHhhhhccCCc
Q 012002 251 AIMFYAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRR--MLLLEAGIQMFLSQTVIAIILGIKVKDHSE 328 (473)
Q Consensus 251 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (473)
....|.|.+-.+ -....-|.+++.+.+..++|+-+..++..|-..| ..+.+.+........+...... ..+
T Consensus 267 FVFLWTPaLspn--~e~iPhGfiFatFMlASmLGSSla~Rl~s~s~~~ve~ymqivf~vs~a~l~Lpilt~~-vsP---- 339 (454)
T KOG4332|consen 267 FVFLWTPALSPN--DEEIPHGFIFATFMLASMLGSSLASRLLSRSSPKVESYMQIVFLVSIAALLLPILTSS-VSP---- 339 (454)
T ss_pred eeeeecccCCCC--cccCCchhHHHHHHHHHHHhhHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHhc-cCC----
Confidence 444566655321 1122356788888889999988887777664433 3444444444433333333221 111
Q ss_pred ccchhhHHHHHHHHHHHHHhhhccccccccccccccccccchhhhHHHHH
Q 012002 329 DLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTV 378 (473)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 378 (473)
.......-++.++.+-.+.+..+ |...-+-++..|.+.|++.+-+..
T Consensus 340 --~kes~~~s~i~F~~~E~cvGlfw-PSimkmRsqyIPEearstimNfFR 386 (454)
T KOG4332|consen 340 --SKESPSESLIGFCLFEACVGLFW-PSIMKMRSQYIPEEARSTIMNFFR 386 (454)
T ss_pred --CcCCchHHHHHHHHHHHHHhhcc-hHHHHHHHhhCCHHHHhhhhhhee
Confidence 11222223445555555555444 444455577889988887654443
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=98.67 E-value=3.7e-07 Score=88.24 Aligned_cols=134 Identities=13% Similarity=0.063 Sum_probs=85.5
Q ss_pred HhHHHHHHHcCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHhHHhHHHHHHHHHHHHHHhhhhccCCcccchh
Q 012002 254 FYAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKDHSEDLHTG 333 (473)
Q Consensus 254 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (473)
.-++++..+.|-++ ...++.....++..++.++.|+++|.+|||..++.+.++..++.++.+.. ++.
T Consensus 65 ~~l~~I~~diG~~~-~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA------------~~~ 131 (599)
T PF06609_consen 65 SILPYINADIGGSD-NWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATA------------QNM 131 (599)
T ss_pred HHHHHHHHhcCCCc-cchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcC------------CcH
Confidence 33456667777664 44567777888999999999999999999999999988888888777653 111
Q ss_pred hHHHHHHHHHHHHHhhhccccccccccccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHH
Q 012002 334 FAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHFKFGIF 404 (473)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (473)
... +....+.+.+ .+...+....++|..|.+.|..+.++...........++.+...+..+.+|...
T Consensus 132 ~~~--iag~~l~Gvg--aG~~~~~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~ 198 (599)
T PF06609_consen 132 NTF--IAGMVLYGVG--AGVQELAALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWI 198 (599)
T ss_pred HHH--HHHHHHHHHh--hHHHHHHHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchH
Confidence 121 2222222211 122223345578999999998877766654444444555655555444444443
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=98.63 E-value=6.6e-07 Score=86.83 Aligned_cols=113 Identities=18% Similarity=0.177 Sum_probs=89.9
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHH-----hhhHHHHHHHHHHHhhhhhhhhh
Q 012002 28 DNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVA-----AQNLAMLIVGRILLGCGVGFANQ 102 (473)
Q Consensus 28 s~~~~~~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~l~~i~~~~~~~-----~~~~~~l~~~r~l~G~~~~~~~~ 102 (473)
+....+++.+...++..++.+++++++||+|+|+.+.++..+..++.+...+ ..+.+.+++.-++.|++.+...+
T Consensus 264 ~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~~~~~~~~ 343 (473)
T PRK10429 264 DADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLAAPHNALLIVIAGILLNIGTALFWV 343 (473)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHH
Confidence 4556777778777889999999999999999999999888877766655433 34567777788899999999999
Q ss_pred hhhHHHhhcCC-------CCCchhhHHHHHHHHHHHHHHHHHHhh
Q 012002 103 AVPLFLSEIAP-------TRIRGGLNILFQLNVTIGILFANLVNY 140 (473)
Q Consensus 103 ~~~~~i~~~~~-------~~~r~~~~~~~~~~~~lG~~~~~~~~~ 140 (473)
...++++|..+ .++.|..++......-+|..+++.+.+
T Consensus 344 ~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g 388 (473)
T PRK10429 344 LQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIG 388 (473)
T ss_pred HHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999865 333456888888888888888877644
|
|
| >KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.61 E-value=2.7e-06 Score=75.41 Aligned_cols=336 Identities=14% Similarity=0.007 Sum_probs=168.0
Q ss_pred cCCCchhHHHHHHHHHHHHHHHHHHHHhhh-----hhhhHHHHH-HHHHHHHHHHHHHHHh-----------hhHHHHHH
Q 012002 26 KYDNQGLQLFTSSLYLAGLTATFFASYTTR-----RLGRRLTML-IAGIFFIAGVAFNVAA-----------QNLAMLIV 88 (473)
Q Consensus 26 ~~s~~~~~~~~s~~~~~~~~~~~~~g~l~D-----r~Grr~~l~-~~~~l~~i~~~~~~~~-----------~~~~~l~~ 88 (473)
|+|.++.+...-++. - ...-++|.++.| |+||||.-+ -+..+.+....+.+.- ++...+..
T Consensus 61 ~vSyt~~a~fS~ay~-P-~sLKllWaPiVDs~y~k~~GrrksWvvp~q~llG~~mllLs~~v~~~~g~ng~~p~v~~lt~ 138 (510)
T KOG3574|consen 61 GVSYTSQAIFSFAYW-P-FSLKLLWAPIVDSVYSKRFGRRKSWVVPCQYLLGLFMLLLSYLVDRGLGGNGGLPNVVALTL 138 (510)
T ss_pred Ccchhhhhhhhhhhh-H-HHHHHHHHhhhHHHHHHhhccccceeeehHHHHHHHHHHHhhCCCcccccCCCCcchHHHHH
Confidence 666666654432221 1 233478899999 999988543 3334433333333321 33334444
Q ss_pred HHHHHhhhhhhhhhhhhHHHhhcCCCCCchhhHHHHHHHHHHHHHHHHHHhhhccccCC-------ccchH---------
Q 012002 89 GRILLGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTSHIKS-------QWGWR--------- 152 (473)
Q Consensus 89 ~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~-------~~~wr--------- 152 (473)
.-++.-+..+..-.+.-.+.-.+..+++-|.+......+...|.+++..+ +-.+.+ ..+|.
T Consensus 139 ~f~LLnflaAtQDIAVDgwALtmLs~e~lgyaST~q~Vg~~~GyfL~~~i---fLaL~s~dF~N~y~rs~P~~~g~ItL~ 215 (510)
T KOG3574|consen 139 LFLLLNFLAATQDIAVDGWALTMLSRENLGYASTCQSVGQTAGYFLGNVV---FLALESPDFCNTYLRSIPLDQGFITLA 215 (510)
T ss_pred HHHHHHHHHhhhhhhhhHHHHHhcCHhhcCchhHHHHHHHhhhHHhhcce---eeEecChhhhhHHHhcCcCccceEEhh
Confidence 55666677777777888888888889999999999999999999998877 322221 01121
Q ss_pred HHHHhhhHHHHHHHHHhhcccCChhhHHhhCChHHHHHHHHHHhCCCCchHHHHHHHHHHhhhhhcccchHHhhcccCch
Q 012002 153 ISLGLAGIPAALLTVGSLLVTDTPNSLIERGRFEEGKAVLRKIRGTDKIEPEFLELVEASRIAKEVKHPFRNLLKRRNRP 232 (473)
Q Consensus 153 ~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (473)
...++.+...++.-.+..+..+++.. + .. ++....-++..+-.+++++-+..+
T Consensus 216 gy~~fwg~~~~vat~Lv~~~kke~~~--------~----------------~~---~e~~~~i~~~yk~l~~vLklk~v~ 268 (510)
T KOG3574|consen 216 GYLWFWGALFIVATTLVALLKKENDE--------S----------------VD---EELELGIHESYKLLRDVLKLKSVR 268 (510)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCch--------h----------------hh---hhhhcCHHHHHHHHHHHHcCccHH
Confidence 22333444444444443333332210 0 00 000000111122345555555533
Q ss_pred hHHHHHHHHHHhhcchhHHHHHhHHHHHHHcCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHhHHhH---HHH
Q 012002 233 QLVIAVALQIFQQCTGINAIMFYAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGI---QMF 309 (473)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~---~~~ 309 (473)
. +.......-.++..-....+.-+.++|++....++...+..-.+++.....|..+.+..+-....-+.. +.+
T Consensus 269 ~----la~i~lt~K~gf~a~da~t~LkLle~Gv~ke~Lal~~v~~~plqI~l~~~~gk~ta~~~pl~~~lka~~~R~~~~ 344 (510)
T KOG3574|consen 269 W----LAGILLTGKLGFQAADALTSLKLLEHGVPKEELALIAVPLVPLQIALPLYIGKWTAGPRPLNVFLKAVPYRLGGG 344 (510)
T ss_pred H----HHHHHHHHHHHhhhhhhccchHHHHcCCChhHheeeeeehhhHHHhhhhhheeecCCCCcchHHHHhhhHHHHHH
Confidence 2 222233333344555555666677889988876655433333334433333333332111111111111 111
Q ss_pred HHHHHHHHHHhhhhccCCcccchhhHHHHHHHHHHHHHhhhccccccccccccccccccchhhhHHHHHHHHHHHHHHHH
Q 012002 310 LSQTVIAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIA 389 (473)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 389 (473)
....++.... .........-........+....+...+.....-...+..+++.++...|+.+.+.|...++|+-.-.
T Consensus 345 ~~~t~Lv~~~--~~~~~~~G~~~~~~~il~i~~y~~~~~~~ts~fv~~maf~aqisdp~iggTymTlLNTLsnLGg~wp~ 422 (510)
T KOG3574|consen 345 LVQTALVWWT--PTLGHSDGTFPRGYYILLITSYAFHQVFVTSMFVSGMAFHAQISDPAIGGTYMTLLNTLSNLGGNWPG 422 (510)
T ss_pred HHHHHHHhhh--cccccCCCceeechHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccCccHHHHHHHHHHhcCCcHH
Confidence 1111111111 11111000011111222222222222222222223345567889999999999999999999998888
Q ss_pred HHHHHHhhhh
Q 012002 390 QAFLSMLCHF 399 (473)
Q Consensus 390 ~~~~~~~~~~ 399 (473)
.+..++.|..
T Consensus 423 tv~l~l~D~l 432 (510)
T KOG3574|consen 423 TVALWLADGL 432 (510)
T ss_pred HHHHHhcccC
Confidence 8888887653
|
|
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.60 E-value=7e-07 Score=75.90 Aligned_cols=150 Identities=10% Similarity=0.008 Sum_probs=109.1
Q ss_pred CCCcccCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHH-HHHHHHHHHHhhhHHHHHHHHHHHhhhhhh
Q 012002 21 DSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIF-FIAGVAFNVAAQNLAMLIVGRILLGCGVGF 99 (473)
Q Consensus 21 ~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~l-~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~ 99 (473)
.++.+|+|+...+.+.|....-.++.+++.|.++||+|++.+.+.+..+ ..++-....| +++.=.++..+.|+....
T Consensus 291 F~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~F--t~lsPy~~m~~lGLsysl 368 (459)
T KOG4686|consen 291 FQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGLFF--TFLSPYTSMTFLGLSYSL 368 (459)
T ss_pred HHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHh--hhccHHHHHHHHhhhHHH
Confidence 3567799999999999999999999999999999999999777665444 4444444433 333345567788888776
Q ss_pred hhhhhhHHHhhcCCCCCchhhHHHHHHHHHHHHHHHHHHhhhccccCCccchHHHHHh-hhHHHHHHHHHhhcc
Q 012002 100 ANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTSHIKSQWGWRISLGL-AGIPAALLTVGSLLV 172 (473)
Q Consensus 100 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~wr~~f~~-~~~~~~~~~~~~~~~ 172 (473)
........++...|+++.|++.+..++..++|..+.|+++++...-...+.|--.|.+ .+.+++....+.+.+
T Consensus 369 lAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~~~~aL~svgil~~~ 442 (459)
T KOG4686|consen 369 LACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLIIGLMALTSVGILFYL 442 (459)
T ss_pred HHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCCchhhHHHHHHHHHHHHHHHHHHHhhe
Confidence 6666777888889999999999999999999999999995554433333445544444 444554444444433
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.2e-06 Score=84.52 Aligned_cols=112 Identities=14% Similarity=0.123 Sum_probs=86.1
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHH--hhhHHHHHHHHHHHhhhhhhhhhhhhHH
Q 012002 30 QGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVA--AQNLAMLIVGRILLGCGVGFANQAVPLF 107 (473)
Q Consensus 30 ~~~~~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~l~~i~~~~~~~--~~~~~~l~~~r~l~G~~~~~~~~~~~~~ 107 (473)
+..+.+.....+...++.+++++++||+|+|+.+..+.++.+++.+...+ .++.+.+++..++.|++.+...+...++
T Consensus 264 ~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~am 343 (444)
T PRK09669 264 DLATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIPPSNVWLIFALNILFNFIQNLTTPLQWSM 343 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666677888889999999999999999999888776654443333 3577778888899999999999999999
Q ss_pred HhhcCCC-------CCchhhHHHHHHHHHHHHHHHHHHhhh
Q 012002 108 LSEIAPT-------RIRGGLNILFQLNVTIGILFANLVNYG 141 (473)
Q Consensus 108 i~~~~~~-------~~r~~~~~~~~~~~~lG~~~~~~~~~~ 141 (473)
++|..+. ++.|..++..+....+|..+|+.+++.
T Consensus 344 ~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ 384 (444)
T PRK09669 344 FSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGW 384 (444)
T ss_pred HHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998752 224566788877778888888877543
|
|
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.7e-06 Score=84.85 Aligned_cols=139 Identities=16% Similarity=0.037 Sum_probs=100.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCcchhHhHHhHHHHHHHHHHHHHHhhhhccCCcccchhhHHHHHHHHHHHHHhhh
Q 012002 271 LYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFA 350 (473)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (473)
+++.+...++..++.++.|+++|++|||+.+..+.+...++.++..... +.....+.-.+.+ ...
T Consensus 92 s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a~--------------~~~~l~~GR~l~G-~g~ 156 (513)
T KOG0254|consen 92 GLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALAP--------------SWYQLIVGRILTG-LGV 156 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhh--------------hHHHHHHHHHHhc-cch
Confidence 7899999999999999999999999999999999999999988888752 1222222222222 222
Q ss_pred ccccccccccccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhh--hhhHHHHHHHHHHHHHHHHHhhccCC
Q 012002 351 WSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHF--KFGIFLFFSGWVLIMSCFVFFLLPET 425 (473)
Q Consensus 351 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (473)
.....+...+.+|..|++.||...+..+....+|..++ .+.+....+. +|...+....+..+...+..++.||+
T Consensus 157 G~~~~~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~-~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~pes 232 (513)
T KOG0254|consen 157 GGASVLAPVYISEIAPAHIRGTLVSLYQLFITIGILLG-YCINYGTSKVYAGWRIPLGLALIPAVILALGMLFLPES 232 (513)
T ss_pred hhhhhcchhhHhhcCChhhhHHHHHHHHHHHHHHHHHH-HHHhhhhccCCccHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 22234566788999999999999999998888666666 6666665543 56655555555555555556777764
|
|
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.56 E-value=9.9e-07 Score=77.96 Aligned_cols=156 Identities=16% Similarity=0.079 Sum_probs=108.7
Q ss_pred hHHHHHHHcCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHhHHhHHHHHHHHHHHHHHhhhhccCCcccchhh
Q 012002 255 YAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKDHSEDLHTGF 334 (473)
Q Consensus 255 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (473)
..|..-...|.+..+..++......+..+++...|.+.|++|||+.....+....+...+-.. +.+.
T Consensus 100 i~~~l~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~grr~~f~~T~l~t~v~~~is~~-------------spnf 166 (528)
T KOG0253|consen 100 ILPALDEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTIGRRKGFNLTFLVTGVFGVISGA-------------SPNF 166 (528)
T ss_pred HHHHHHhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhhhhcchhhhhhHHHHHHHHHhhcC-------------CCCe
Confidence 334444457888889999999999999999999999999999999998777666655554443 1112
Q ss_pred HHHHHHHHHHHHHhhhccccccccccccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHH
Q 012002 335 AVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHFKFGIFLFFSGWVLIM 414 (473)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (473)
.++ .+.-+.... +.+..|...++-.|..|...|..-+-+. ..-.+|......+.-....+.|+...+.....-...
T Consensus 167 ~~L-~~f~~l~~~--g~gg~pv~~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~law~vm~~~gwr~~l~~~~~pl~~ 242 (528)
T KOG0253|consen 167 ASL-CVFRALWGF--GVGGLPVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLAWGVMSNFGWRYLLFTSSTPLMF 242 (528)
T ss_pred ehh-hHHHHHHhc--cCCCccHhHHHHHHhccCcCCCcchhHH-HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHH
Confidence 222 222222222 2222455556667999999888776555 666677777777776677788888887777777777
Q ss_pred HHHHHhhccCCCC
Q 012002 415 SCFVFFLLPETKN 427 (473)
Q Consensus 415 ~~~~~~~~~~~~~ 427 (473)
.+..+++++|..+
T Consensus 243 ~a~f~~w~~ESpR 255 (528)
T KOG0253|consen 243 AARFLVWVYESPR 255 (528)
T ss_pred HHHHHhhcccCcc
Confidence 7778888887643
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=98.55 E-value=2.6e-09 Score=103.28 Aligned_cols=145 Identities=17% Similarity=0.108 Sum_probs=98.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHhHHhHHHHHHHHHHHHHHhhhhccCCcccchhhHHHHHHHHHHHHHhh
Q 012002 270 SLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAF 349 (473)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (473)
.+...+...++.++|+++.|+++||+|||+.+..+..+..++.++..+.. .......+...-++.+..
T Consensus 48 ~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~~i~~~~~~~~~------------~~~~~~~~~~~R~~~G~~ 115 (451)
T PF00083_consen 48 SSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALLMIIGSILIAFAP------------SYNNFWMLLIGRFLIGFG 115 (451)
T ss_pred HHHHHHHHHhhhcccccccccccccccccccccccccccccccccccccc------------cccccccccccccccccc
Confidence 46778888999999999999999999999999999888888887777642 001122222222333333
Q ss_pred hccccccccccccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhh---hhhhHHHHHHHHHHHHHHHHHhhccCCC
Q 012002 350 AWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCH---FKFGIFLFFSGWVLIMSCFVFFLLPETK 426 (473)
Q Consensus 350 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (473)
.....+....++.|..|++.|+...++.+....+|..++..+.-...+. ..|...+.+..+..+...+...++||+.
T Consensus 116 ~g~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~l~~~~~~~~~pESP 195 (451)
T PF00083_consen 116 IGGAYVVSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFGAIPSLLVLLLRFFLPESP 195 (451)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 3344456778889999999999999988888877766665554333221 2355555555555555556667778754
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=98.52 E-value=6.7e-07 Score=85.71 Aligned_cols=111 Identities=15% Similarity=0.169 Sum_probs=99.5
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhh--hHHHHHHHHHHHhhhhhhhhhhhhHH
Q 012002 30 QGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVAAQ--NLAMLIVGRILLGCGVGFANQAVPLF 107 (473)
Q Consensus 30 ~~~~~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~l~~i~~~~~~~~~--~~~~l~~~r~l~G~~~~~~~~~~~~~ 107 (473)
...+.+..+..++..++.+++++++||+|+|+.+..+..+.+++.++..+.+ |.+.+++.-++.|++.+...+...++
T Consensus 260 ~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~gi~~~~~~~~~~a~ 339 (428)
T PF13347_consen 260 GLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFLGPGSPWLVLILFILAGIGYGAFFVIPWAM 339 (428)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHhHhhhcccccccccc
Confidence 5778888899999999999999999999999999999999999999998886 99999999999999999999999999
Q ss_pred HhhcCCC-------CCchhhHHHHHHHHHHHHHHHHHHhh
Q 012002 108 LSEIAPT-------RIRGGLNILFQLNVTIGILFANLVNY 140 (473)
Q Consensus 108 i~~~~~~-------~~r~~~~~~~~~~~~lG~~~~~~~~~ 140 (473)
++|..+. ++.|..++..+...-+|..+++.+..
T Consensus 340 ~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g 379 (428)
T PF13347_consen 340 LADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVG 379 (428)
T ss_pred cccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHH
Confidence 9998873 33578888888888888888887644
|
|
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=98.48 E-value=2.6e-07 Score=63.87 Aligned_cols=73 Identities=12% Similarity=-0.001 Sum_probs=67.8
Q ss_pred ccccCCCCCcccCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 012002 15 RTQQGDDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVAAQNLAMLI 87 (473)
Q Consensus 15 ~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~l~~i~~~~~~~~~~~~~l~ 87 (473)
.++.|.|.+|.++|.++.|++.+..++||.+|++...++.++..+++.+..+.+...+..+.+++.++.+.+.
T Consensus 12 TplLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~~~~~~w~ 84 (85)
T PF06779_consen 12 TPLLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALTHSFWLWS 84 (85)
T ss_pred HhHhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhchHHHh
Confidence 4577889999999999999999999999999999999999999999999999999999999999999887654
|
Note that many members are hypothetical proteins. |
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=98.45 E-value=6.7e-06 Score=65.20 Aligned_cols=113 Identities=19% Similarity=0.204 Sum_probs=94.3
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhhhhhhH
Q 012002 27 YDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVAAQNLAMLIVGRILLGCGVGFANQAVPL 106 (473)
Q Consensus 27 ~s~~~~~~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~l~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~ 106 (473)
+++..--.-.++.+....+.+++.+.+.+++|.|+.++++.+.+.+-.. .-+-++.+.++.+-++.|++.+..+++.-.
T Consensus 34 i~~~~G~~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~-~~~~~~~~~l~~~s~l~G~~~a~lW~aqg~ 112 (156)
T PF05978_consen 34 ISAGLGYYSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIA-SFFYPNSYTLYPASALLGFGAALLWTAQGT 112 (156)
T ss_pred ccccccHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHH-HHHhhhHHHHHHHHHHHhhhhHHhhHhhhH
Confidence 3333334555666777788889999999999999999999999886444 345678889999999999999999999999
Q ss_pred HHhhcCCCCCchhhHHHHHHHHHHHHHHHHHHhh
Q 012002 107 FLSEIAPTRIRGGLNILFQLNVTIGILFANLVNY 140 (473)
Q Consensus 107 ~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~ 140 (473)
++.+..++++|++..+++......+.++|.++..
T Consensus 113 ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~ 146 (156)
T PF05978_consen 113 YLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLF 146 (156)
T ss_pred HHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998888888888887743
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.44 E-value=5.5e-07 Score=83.54 Aligned_cols=145 Identities=16% Similarity=0.132 Sum_probs=124.9
Q ss_pred cccCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhhhh
Q 012002 24 YCKYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVAAQNLAMLIVGRILLGCGVGFANQA 103 (473)
Q Consensus 24 ~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~l~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~ 103 (473)
|++-.+.-.|........+-++.-++.+++..|+|+-+++.+++.+..+=.+...+.+|.|+.+...+++|+..+..+.+
T Consensus 400 d~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L~n~W~vLPieilqgit~aliWaa 479 (618)
T KOG3762|consen 400 DLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYLQNPWMVLPIEILQGITHALIWAA 479 (618)
T ss_pred hcCCcceeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHhcCchheeeHHHHHHHHHHHHHHH
Confidence 34556677777778888888999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHhhcCCCCCchhhHHHHHH-HHHHHHHHHHHHhhhccccCCccchHHHHHhhhHHHHHHHHHhhc
Q 012002 104 VPLFLSEIAPTRIRGGLNILFQL-NVTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVGSLL 171 (473)
Q Consensus 104 ~~~~i~~~~~~~~r~~~~~~~~~-~~~lG~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~ 171 (473)
..+|++...||+-|..+.++.+. ..++|--+|.++ .+.+.+.++=|..|.+.++.+++.+++...
T Consensus 480 ~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslI---GG~~v~~fg~~ttf~~~giAcl~~l~~~~~ 545 (618)
T KOG3762|consen 480 IISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLI---GGFVVERFGARTTFRIFGIACLVTLALFIS 545 (618)
T ss_pred HHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhh---hhhhheeehhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999988764 456777777777 555566688899999999888877666443
|
|
| >PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ] | Back alignment and domain information |
|---|
Probab=98.40 E-value=3.3e-05 Score=71.64 Aligned_cols=41 Identities=7% Similarity=-0.199 Sum_probs=32.9
Q ss_pred cccccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 012002 358 WLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCH 398 (473)
Q Consensus 358 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (473)
.++-+.+..+..-|+.+.+.|+..++|+-.-..+.-++.|.
T Consensus 427 ~AFharISDP~IGGTYMTLLNTvSNLGGtWP~~~vL~lVD~ 467 (544)
T PF13000_consen 427 MAFHARISDPAIGGTYMTLLNTVSNLGGTWPRTFVLWLVDY 467 (544)
T ss_pred HHHHhhccCcccchHHHHHHHHHHhcCCCchHHHHHHHhhh
Confidence 34446788889999999999999999988777776666654
|
This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane |
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.38 E-value=8.6e-06 Score=72.28 Aligned_cols=143 Identities=16% Similarity=0.139 Sum_probs=111.0
Q ss_pred CcccCCCchhHHHHHHHHHHHHHHHHHHHHhhhhh-hhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhh
Q 012002 23 NYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRRL-GRRLTMLIAGIFFIAGVAFNVAAQNLAMLIVGRILLGCGVGFAN 101 (473)
Q Consensus 23 ~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~Dr~-Grr~~l~~~~~l~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~ 101 (473)
.|-|+|..+.|++.+...+.....++....+++|. ++|+..+....++.++.+.+.+.+....++. -++.|+|.|..+
T Consensus 236 i~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~~~~P~~~~~lw-~~llG~G~G~~F 314 (395)
T COG2807 236 IDRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLVGLLLAPGQLPILW-ALLLGLGQGGAF 314 (395)
T ss_pred HHcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhhHHHHH-HHHHhCccchHH
Confidence 34599999999999999999999999999999965 6788888888888888888888765554444 499999999999
Q ss_pred hhhhHHHhhcCCCCC-chhhHHHHHHHHHHHHHHHHHHhhhccccCCc-cchHHHHHhhhHHHHHHHHHh
Q 012002 102 QAVPLFLSEIAPTRI-RGGLNILFQLNVTIGILFANLVNYGTSHIKSQ-WGWRISLGLAGIPAALLTVGS 169 (473)
Q Consensus 102 ~~~~~~i~~~~~~~~-r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~-~~wr~~f~~~~~~~~~~~~~~ 169 (473)
+.+..++.+..++.+ -++..++.+....+=...||.+ .+.+.|. .+|+...+......+++.+.-
T Consensus 315 ~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l---~G~lhDa~gsw~~~~~~l~~~~i~m~i~G 381 (395)
T COG2807 315 PLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWL---FGFLHDATGSWSAPLVLLALATLLMLIFG 381 (395)
T ss_pred HHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhh---HhHHHHhcCChHHHHHHHHHHHHHHHHHH
Confidence 999999998876544 4455666665555556677777 4444432 369988888777777666553
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.34 E-value=1.5e-05 Score=76.81 Aligned_cols=149 Identities=9% Similarity=0.012 Sum_probs=92.8
Q ss_pred HHHHhhcchhHHHHHhHHHHHHH-cCCCCcchHHHHHHHHHHHHHHHHHHHHHHhh----cCcchhHh-HHhHHHHHHHH
Q 012002 240 LQIFQQCTGINAIMFYAPVLFKT-LGFGGSASLYSTVITGAVNVLSTLVSIYSVDK----VGRRMLLL-EAGIQMFLSQT 313 (473)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~----~~~~~~~~-~~~~~~~~~~~ 313 (473)
+.-+.....+.....|+.+++.+ .|+++..+|.+..+.-+...+.-++.|.++|| +||||..+ ++.+.++++..
T Consensus 16 ~g~~~~~~~~~~~~~~l~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~ 95 (460)
T PRK11462 16 MGDAASHIIFDNVMLYMMFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCV 95 (460)
T ss_pred cchhhhhHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHH
Confidence 33333344455566667666654 89999999999999999999999999999997 57765554 45455555544
Q ss_pred HHHHHHhhhhccCCcccchhhHHHHHHHHHHHHHhhhcccccccccccccccc-ccchhhhHHHHHHHHHHHHHHHHHHH
Q 012002 314 VIAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFP-LETRSAGQSVTVCVNLLFTFVIAQAF 392 (473)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (473)
++... + +.+ ......+..+..+++..++..... ...++.+|+.+ +++|++..+.......+|..+++.+.
T Consensus 96 llf~~---p--~~s---~~~~~~y~~~~~~~~~~~~t~~~i-py~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~ 166 (460)
T PRK11462 96 LAYST---P--DLS---MNGKMIYAAITYTLLTLLYTVVNI-PYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLM 166 (460)
T ss_pred HHHhC---C--CCC---cchHHHHHHHHHHHHHHHHHHHhc-cHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33321 0 000 111122223333333333333332 23456677766 57899999999999888887777665
Q ss_pred HHHhh
Q 012002 393 LSMLC 397 (473)
Q Consensus 393 ~~~~~ 397 (473)
..+..
T Consensus 167 ~plv~ 171 (460)
T PRK11462 167 MPLVN 171 (460)
T ss_pred HHHHH
Confidence 55444
|
|
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.32 E-value=3.4e-06 Score=79.00 Aligned_cols=185 Identities=9% Similarity=0.037 Sum_probs=112.9
Q ss_pred hhHHHHHHHHHHhhcchhHHHHHhHHHHHHH--cCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCc-chhHhHHhHHH
Q 012002 232 PQLVIAVALQIFQQCTGINAIMFYAPVLFKT--LGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGR-RMLLLEAGIQM 308 (473)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~-~~~~~~~~~~~ 308 (473)
++.+++..+..+.....+..+..-.-.|+++ .+-+.+..|++.+...++..+++++.|+...|.+. |+.++.+.+++
T Consensus 33 wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii~ 112 (488)
T KOG2325|consen 33 WRSIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLIA 112 (488)
T ss_pred hHhHHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccCHHHHHHHH
Confidence 3445555555554444433332222234455 66677788999999999999999999999999886 88889999999
Q ss_pred HHHHHHHHHHHhhhhccCCcccchhhHHHHHHHHHHHHHhhhccccccccccccccccccchhhhHHHHHHHHHHHHHHH
Q 012002 309 FLSQTVIAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVI 388 (473)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 388 (473)
.++.++....... ++. +..+++.+=+..+.+.+.....-.|+++..-.+.|.++++.......+|..+|
T Consensus 113 ~~g~llY~~l~~~---------~~~--~~y~mL~~R~l~Gvg~~n~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilG 181 (488)
T KOG2325|consen 113 IIGNLLYLALAYV---------PNG--VKYLMLVARILTGVGVGNFAVLRAYIADASTVEDRPRAFAATSGGFVLGIILG 181 (488)
T ss_pred HHHHHHHHHHHhc---------ccc--hHHHHHHHHHHcCcCcccHHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHh
Confidence 9998888555321 121 22333333333333434445667777787777788888887777666666666
Q ss_pred HHHHHHHhh---h-h---------hhh-HHHHHHHHHHHHHHHHHhhccCCCC
Q 012002 389 AQAFLSMLC---H-F---------KFG-IFLFFSGWVLIMSCFVFFLLPETKN 427 (473)
Q Consensus 389 ~~~~~~~~~---~-~---------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (473)
|.+...... . . -+. ..++...+.++..+++.++.+|..+
T Consensus 182 p~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~~ 234 (488)
T KOG2325|consen 182 PTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEVYR 234 (488)
T ss_pred HHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheeeccc
Confidence 655433321 1 0 123 3344444444555555566666443
|
|
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.32 E-value=7.6e-06 Score=78.17 Aligned_cols=152 Identities=14% Similarity=0.056 Sum_probs=104.4
Q ss_pred HHcCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHhHHhHHHHHHHHHHHHHHhhhhccCCcccchhhHHHHHH
Q 012002 261 KTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKDHSEDLHTGFAVLVVI 340 (473)
Q Consensus 261 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (473)
++.++...+.+...+.+.++.+++.+.++.+.||++..+.+....+...+..++.... .....++
T Consensus 74 edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~~---------------~s~~~~i 138 (495)
T KOG2533|consen 74 EDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAAV---------------HSFPGLI 138 (495)
T ss_pred cccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHH---------------hhhHHHH
Confidence 4456777889999999999999999999999999995554443333322222222211 1223344
Q ss_pred HHHHHHHhhhccccccccccccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHhh------hhhhhHHHHH-HHHHHH
Q 012002 341 MICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLC------HFKFGIFLFF-SGWVLI 413 (473)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~-~~~~~~ 413 (473)
+.-++.+.+..+..|....+++..+.+++|+.-+|+.+....+|+++++.+...+.. ..+|...+++ +++.++
T Consensus 139 alr~llGl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~ 218 (495)
T KOG2533|consen 139 ALRFLLGLFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLV 218 (495)
T ss_pred HHHHHHHHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHH
Confidence 444455555555666767788999999999999999999999999999998877533 2356555544 555555
Q ss_pred HHHHHHhhccCCCC
Q 012002 414 MSCFVFFLLPETKN 427 (473)
Q Consensus 414 ~~~~~~~~~~~~~~ 427 (473)
.++++++++|+...
T Consensus 219 ~gi~~f~~lp~~P~ 232 (495)
T KOG2533|consen 219 LGIVVFFFLPDNPS 232 (495)
T ss_pred HHheEEEEecCChh
Confidence 66677777776443
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=98.31 E-value=2.2e-05 Score=71.37 Aligned_cols=154 Identities=12% Similarity=0.095 Sum_probs=127.8
Q ss_pred cccCCCCCcccCCCchhHHHHHHHHHHHHHHHHHHHHhhh-hhhhHHHHHHHHHHHHHHHHHHHHh---hhHHHHHHHHH
Q 012002 16 TQQGDDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTR-RLGRRLTMLIAGIFFIAGVAFNVAA---QNLAMLIVGRI 91 (473)
Q Consensus 16 ~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~D-r~Grr~~l~~~~~l~~i~~~~~~~~---~~~~~l~~~r~ 91 (473)
.++|.-.+.||++..+...+......|..++-...|++.. |.++|++-.+++.+..++..+..++ .+.+.+...-+
T Consensus 230 iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~~~~~~~~~~~~ 309 (403)
T PF03209_consen 230 ILEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPLGSPWLFRPGVF 309 (403)
T ss_pred HcCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHH
Confidence 3556778889999999999999999999999999999988 6788888888888887777665544 67889999999
Q ss_pred HHhhhhhhhhhhhhHHHhhcCCCCCchhhHHHHHHHHHHHHHHHHHHhhhccccC-------CccchHHHHHhhhHHHHH
Q 012002 92 LLGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTSHIK-------SQWGWRISLGLAGIPAAL 164 (473)
Q Consensus 92 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~-------~~~~wr~~f~~~~~~~~~ 164 (473)
+.|++.|.......+.+.+...+++.|..+|.+.....++..++..++....++. ...+|-.+|.+.++..++
T Consensus 310 l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~~~~~~~~aY~~VF~lEa~ll~~ 389 (403)
T PF03209_consen 310 LLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVRALFGNSPALAYGVVFALEAVLLLA 389 (403)
T ss_pred HHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999888888888866554322 235677888887777666
Q ss_pred HHHHh
Q 012002 165 LTVGS 169 (473)
Q Consensus 165 ~~~~~ 169 (473)
.+.+.
T Consensus 390 a~~ll 394 (403)
T PF03209_consen 390 ALVLL 394 (403)
T ss_pred HHHHH
Confidence 55543
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=98.30 E-value=1.1e-05 Score=75.56 Aligned_cols=108 Identities=21% Similarity=0.397 Sum_probs=88.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhh---h------HHHHHHHHHHHhhhhhhhhhhhhHHHhhcCCCC---CchhhHHHHHHHH
Q 012002 61 LTMLIAGIFFIAGVAFNVAAQ---N------LAMLIVGRILLGCGVGFANQAVPLFLSEIAPTR---IRGGLNILFQLNV 128 (473)
Q Consensus 61 ~~l~~~~~l~~i~~~~~~~~~---~------~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~---~r~~~~~~~~~~~ 128 (473)
|+++++.+++.+|.++..++. + .+.++++-++.++|.|+.-|...++.+|.++++ +|...+.+++.+.
T Consensus 2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i 81 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI 81 (372)
T ss_dssp HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence 678889999999999955542 2 267899999999999999999999999999765 3667888999999
Q ss_pred HHHHHHHHHHhhhccccCCccchHHHHHhhhHHHHHHHHHhhc
Q 012002 129 TIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVGSLL 171 (473)
Q Consensus 129 ~lG~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~ 171 (473)
++|..++..+ ...+.+++||.+.|.+.++..++..+.++.
T Consensus 82 n~G~~~~~~~---~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~ 121 (372)
T PF00854_consen 82 NIGSLFSPTL---VPYIQQNYGWFLGFGIPAIGMLLALIVFLS 121 (372)
T ss_dssp HHHHHHHHHC---CCHHHHCS-HHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhhHhhccc---chhhccccchhhhhhHHHHHHHHHHHHHHh
Confidence 9999999998 777777899999999998887776665443
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.25 E-value=7e-05 Score=73.07 Aligned_cols=147 Identities=16% Similarity=0.174 Sum_probs=117.8
Q ss_pred CCCcccCCCchhHHHHHHHHHHHHHHHHHHHHhhhhh-hhHHHHHHHHHHHHHHHHHHHHhhhH----------------
Q 012002 21 DSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRRL-GRRLTMLIAGIFFIAGVAFNVAAQNL---------------- 83 (473)
Q Consensus 21 ~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~Dr~-Grr~~l~~~~~l~~i~~~~~~~~~~~---------------- 83 (473)
+.+++|.+...+.-..+.+.-......+.+++++|-| ||-+++.++.++..++.++..++...
T Consensus 64 lt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~~~~~~~~~ 143 (571)
T KOG1237|consen 64 LTLELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMCKFKPGGNV 143 (571)
T ss_pred HHHHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccCCCCCCc
Confidence 4556678888888888888888899999999999976 99999999999988887665554221
Q ss_pred ---------HHHHHHHHHHhhhhhhhhhhhhHHHhhcCC---CCC---chhhHHHHHHHHHHHHHHHHHHhhhccccCCc
Q 012002 84 ---------AMLIVGRILLGCGVGFANQAVPLFLSEIAP---TRI---RGGLNILFQLNVTIGILFANLVNYGTSHIKSQ 148 (473)
Q Consensus 84 ---------~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~---~~~---r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~ 148 (473)
..+..+.-+..+|.|+.-+...++-+|-++ +++ +...+.++....++|..++..+ ..+.-++
T Consensus 144 c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~---~vyiq~~ 220 (571)
T KOG1237|consen 144 CESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTV---LVYIQDN 220 (571)
T ss_pred ccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHH---HHhhhhc
Confidence 256667788888999999999999999998 322 3367888999999999999988 7777678
Q ss_pred cchHHHHHhhhHHHHHHHHHhh
Q 012002 149 WGWRISLGLAGIPAALLTVGSL 170 (473)
Q Consensus 149 ~~wr~~f~~~~~~~~~~~~~~~ 170 (473)
.+|.+-|.+..+...++.++++
T Consensus 221 ~~w~lgf~i~~~~~~lai~iF~ 242 (571)
T KOG1237|consen 221 VGWKLGFGIPTVLNALAILIFL 242 (571)
T ss_pred ccceeeccHHHHHHHHHHHHHH
Confidence 8999999888877766655543
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.18 E-value=4.2e-05 Score=71.64 Aligned_cols=114 Identities=15% Similarity=0.189 Sum_probs=91.7
Q ss_pred ccCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhh--hHHHHHHHHHHHhhhhhhhhh
Q 012002 25 CKYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVAAQ--NLAMLIVGRILLGCGVGFANQ 102 (473)
Q Consensus 25 ~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~l~~i~~~~~~~~~--~~~~l~~~r~l~G~~~~~~~~ 102 (473)
+|-++....+.......+..++.+++.++++|+|+|+++.++.++..++.++.-+.+ +.+.+++..++.++|.+...+
T Consensus 267 lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~~~~~~l~~~~~~i~~~g~~~~~~ 346 (467)
T COG2211 267 LGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTPAGSVVLIVVALIIAGVGTGIANP 346 (467)
T ss_pred cCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHhhcccc
Confidence 355666677788888888888899999999999999999999999999999998876 788889999999999999999
Q ss_pred hhhHHHhhcCCC-------CCchhhHHHHHHHHHHHHHHHHHH
Q 012002 103 AVPLFLSEIAPT-------RIRGGLNILFQLNVTIGILFANLV 138 (473)
Q Consensus 103 ~~~~~i~~~~~~-------~~r~~~~~~~~~~~~lG~~~~~~~ 138 (473)
...++++|..+- ++-|...+......=+|.+++..+
T Consensus 347 l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~ 389 (467)
T COG2211 347 LPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFI 389 (467)
T ss_pred ccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHH
Confidence 999999887652 223555666555555566655533
|
|
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=98.16 E-value=0.00034 Score=66.34 Aligned_cols=91 Identities=9% Similarity=0.062 Sum_probs=52.2
Q ss_pred hHHHHHHHHHHHhhhhhhhhhhhhHHHhhcCCCCCchhhHHHHHHHHHHHHHHHHHHhhhccccCCc---cchH--HHHH
Q 012002 82 NLAMLIVGRILLGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTSHIKSQ---WGWR--ISLG 156 (473)
Q Consensus 82 ~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~---~~wr--~~f~ 156 (473)
.++..++.-++.|++.+........+.+. +|++ .+..+..+.+++++++.++-.......+. ..++ .-|.
T Consensus 105 ~f~~~~~~v~~~g~~~~~~q~s~~gla~~-fp~~----~~~a~~~G~g~aGv~~s~~~ii~~a~~~~~~~~~~~a~~YF~ 179 (437)
T TIGR00939 105 FFVTTMASVVIINSGMALLQGSLFGLAGV-FPST----YSSAVMSGQGLAGVLTSLAMILVKASGNDSHGLKKSALGYFG 179 (437)
T ss_pred HHHHHHHHHHHHHhhhhhhcccchhhccc-CCHH----HHHHHHhcchhHHHHHHHHHHHHHHhcCCccchhhhhhhHHH
Confidence 56777778889999999888888887774 5544 34555566666666655543322211111 1222 2333
Q ss_pred hhhHHHHHHHHHhhcccCChh
Q 012002 157 LAGIPAALLTVGSLLVTDTPN 177 (473)
Q Consensus 157 ~~~~~~~~~~~~~~~~~e~p~ 177 (473)
+..++.+++++....+++.|.
T Consensus 180 ~a~~v~l~~i~~~~~l~k~~~ 200 (437)
T TIGR00939 180 TPCVVQLICIVCYLLLPKLPF 200 (437)
T ss_pred HHHHHHHHHHHHHHHHhcCHH
Confidence 344444445555555676663
|
|
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=98.15 E-value=1.5e-05 Score=54.88 Aligned_cols=68 Identities=19% Similarity=0.294 Sum_probs=57.8
Q ss_pred HHHHHhhcchhHHHHHhHHHHHHHcCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHhHHhH
Q 012002 239 ALQIFQQCTGINAIMFYAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGI 306 (473)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~ 306 (473)
-..++........+.-|.|.++++.|+++.+.|.+.++..+..+++.++.|.++||.++++.......
T Consensus 6 k~~yf~~f~~~g~~~Pfl~~~~~~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~ 73 (77)
T PF12832_consen 6 KAFYFFYFAALGCLYPFLPLYLKQLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSL 73 (77)
T ss_pred HHHHHHHHHHHHHHHhhhhHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHH
Confidence 34445555667778888999999999999999999999999999999999999999999888775543
|
|
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.00013 Score=69.23 Aligned_cols=135 Identities=13% Similarity=0.131 Sum_probs=95.0
Q ss_pred HHHHHHHHHHHHHHHHhhcCcchhHhHHhHHHHHHHHHHHHHHhhhhccCCcccchhhHHHHHHHHHHHHHhhhcccccc
Q 012002 277 TGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPL 356 (473)
Q Consensus 277 ~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (473)
.++..++.+...|.++|++|||..+......+.+......+.. ++.++ ..-..+.+ ......
T Consensus 71 ~~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~~----------------~~~~~-~~~l~g~~-~~~~s~ 132 (463)
T KOG2816|consen 71 AGLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQG----------------YWFFL-LLGLSGGF-SAIFSV 132 (463)
T ss_pred hHHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHHH----------------HHHhh-hcccccch-hhhhhh
Confidence 3678888899999999999999999887777666666555531 22222 21112222 222235
Q ss_pred ccccccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHH-HHHHhhccCCCCCC
Q 012002 357 GWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHFKFGIFLFFSGWVLIMS-CFVFFLLPETKNVP 429 (473)
Q Consensus 357 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 429 (473)
..++.++....+.|....|+.+.....+..++|.+.+.+....+....+.++.+..+.. ....+++||+..++
T Consensus 133 ~~a~vadis~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~ 206 (463)
T KOG2816|consen 133 GFAYVADISSEEERSSSIGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESLQEK 206 (463)
T ss_pred hhhheeeccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccCcc
Confidence 56778899999999999999999999999999999999998887666555555554444 44455667765443
|
|
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.00018 Score=64.58 Aligned_cols=57 Identities=21% Similarity=0.111 Sum_probs=48.7
Q ss_pred HHHHHcCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHhHHhHHHHHHHHH
Q 012002 258 VLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTV 314 (473)
Q Consensus 258 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~ 314 (473)
.+.+++|++..+.+.++....+.+.+...+.|.+.||+|||+..+...++..++++.
T Consensus 59 ~LY~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~ 115 (354)
T PF05631_consen 59 ALYESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLT 115 (354)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHH
Confidence 345679999999999999999999999999999999999999988777766666653
|
|
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.015 Score=55.78 Aligned_cols=261 Identities=16% Similarity=0.137 Sum_probs=136.0
Q ss_pred CCchhHHHHHHHHH-HHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHh---------h----------------
Q 012002 28 DNQGLQLFTSSLYL-AGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVAA---------Q---------------- 81 (473)
Q Consensus 28 s~~~~~~~~s~~~~-~~~~~~~~~g~l~Dr~Grr~~l~~~~~l~~i~~~~~~~~---------~---------------- 81 (473)
+.+.+..+-....+ +..+...+..++++|++|.+++-+....+.....++++. +
T Consensus 56 gae~I~flK~~~vlP~a~~f~~~y~kl~n~~s~~~lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~ 135 (491)
T PF03219_consen 56 GAEVIPFLKVWGVLPVAILFTILYSKLSNRLSREKLFYIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFK 135 (491)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHH
Confidence 44555566554444 345667889999999999999887777766666666553 0
Q ss_pred ------hHHHHHHHHHHHhhhhhhhhh-hhhHHHhhcCCCCCchhhHHHHHHHHHHHHHHHHHHhhhccc-cC-----Cc
Q 012002 82 ------NLAMLIVGRILLGCGVGFANQ-AVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTSH-IK-----SQ 148 (473)
Q Consensus 82 ------~~~~l~~~r~l~G~~~~~~~~-~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~-~~-----~~ 148 (473)
+.|.+.+.-++.-+-.....+ .-..+..|.++.+|-.|..++++.+.++|.++++.+...... .. +.
T Consensus 136 ~~i~~~~~Wt~slfYv~aElwgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~~~~~~~~~~~ 215 (491)
T PF03219_consen 136 GFIAMFRNWTFSLFYVMAELWGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSSFLRKSLPAGV 215 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccc
Confidence 122333333333333233332 456778999999999999999999999999999888544444 11 12
Q ss_pred cchHHHHHhh----hHHHHHHHHHhhcccCChhhHHhhCChHHHHHHHHHHhCCCCchHHHHHHHHHHhhhhhcccchHH
Q 012002 149 WGWRISLGLA----GIPAALLTVGSLLVTDTPNSLIERGRFEEGKAVLRKIRGTDKIEPEFLELVEASRIAKEVKHPFRN 224 (473)
Q Consensus 149 ~~wr~~f~~~----~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (473)
..|...+... .+.+++...+..++.+.. ..+++. . ....++++++.+.+.++
T Consensus 216 ~~~~~~l~~l~~~v~~~g~~i~~~~~~~~~~v---l~~~~~----------------~-----~~~~~~kk~k~k~s~~e 271 (491)
T PF03219_consen 216 DAWELSLNSLMGIVLILGIVIILLYRYMNKNV---LTDPRF----------------Y-----PSAKKKKKKKPKMSLKE 271 (491)
T ss_pred ccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHc---cCcccc----------------c-----hhhhcccccCCCccHHH
Confidence 3465433222 122222222222221100 000000 0 00111222233334444
Q ss_pred hhcccCchhHHHHHHHHHHhhcchhHHHHHhHHHHHHHcCCCCcc----hHHHHHHHHHHHHHHHHHHHHHHhhcCcchh
Q 012002 225 LLKRRNRPQLVIAVALQIFQQCTGINAIMFYAPVLFKTLGFGGSA----SLYSTVITGAVNVLSTLVSIYSVDKVGRRML 300 (473)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~----~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~ 300 (473)
-++.-.+.+.+..+++...++......+..-.-...++.--++.+ .|......++..++..++++.+.+|+|-+..
T Consensus 272 s~k~l~kS~yL~~Ia~lvi~Ygi~inLvE~~wK~~lk~~~~~~~~ysafmG~~~~~tGivtii~~~l~~~iir~~GW~~~ 351 (491)
T PF03219_consen 272 SFKLLLKSKYLLCIALLVIAYGISINLVEVVWKSQLKQLYPDPNDYSAFMGKFSSWTGIVTIIMMFLSSNIIRRFGWRTA 351 (491)
T ss_pred HHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 333222222255444444443333333322222222222223222 2344555667777777888899999998777
Q ss_pred HhHHhHHHHHHH
Q 012002 301 LLEAGIQMFLSQ 312 (473)
Q Consensus 301 ~~~~~~~~~~~~ 312 (473)
..+.-+.+.+..
T Consensus 352 AlitPiv~lit~ 363 (491)
T PF03219_consen 352 ALITPIVILITG 363 (491)
T ss_pred HHHhHHHHHHHH
Confidence 666555444433
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.00041 Score=69.17 Aligned_cols=157 Identities=14% Similarity=0.069 Sum_probs=98.9
Q ss_pred HHHHHcCCCCcchHHHHHHHHHHHHHHHHHHHHHHhh-cCcchhHhHHhHHHHHHHHHHHHHHhhhhccCCcccchhhHH
Q 012002 258 VLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDK-VGRRMLLLEAGIQMFLSQTVIAIILGIKVKDHSEDLHTGFAV 336 (473)
Q Consensus 258 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (473)
++.+.+|++...+..+........-+..+++|++.|+ +|+++.+..+.++..++..++.+... . . ........
T Consensus 13 Yl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~-~--~---~~~~~~~~ 86 (654)
T TIGR00926 13 YFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAI-P--S---SGHPLHDL 86 (654)
T ss_pred HHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccC-c--c---cccchHHH
Confidence 3345588888888777777777777888899999997 69999999888888887766665311 0 0 00011111
Q ss_pred HHHHHHHHHHHhhhcccccccccccccccccc---chhhhHHHHHHHHHHHHHHHHHHHHHHhhhh-------hhhHHHH
Q 012002 337 LVVIMICTFISAFAWSWGPLGWLIPSETFPLE---TRSAGQSVTVCVNLLFTFVIAQAFLSMLCHF-------KFGIFLF 406 (473)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~ 406 (473)
..+.. ..+......+.-|...+...|.++++ .+.....+.....++|+.+++.+.+++.+.. ++...+.
T Consensus 87 ~~l~g-LaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~ 165 (654)
T TIGR00926 87 LDLLG-LALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFG 165 (654)
T ss_pred HHHHH-HHHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHH
Confidence 12222 22233333334455556666777643 3677888888899999999999999887543 3555555
Q ss_pred HHHHHHHHHHHHHhh
Q 012002 407 FSGWVLIMSCFVFFL 421 (473)
Q Consensus 407 ~~~~~~~~~~~~~~~ 421 (473)
+.+++.+++.+....
T Consensus 166 i~~i~m~ia~lvf~~ 180 (654)
T TIGR00926 166 VPAILMILALIVFMA 180 (654)
T ss_pred HHHHHHHHHHHHHHH
Confidence 555555555544433
|
|
| >COG3202 ATP/ADP translocase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.01 Score=55.56 Aligned_cols=123 Identities=15% Similarity=0.040 Sum_probs=86.0
Q ss_pred CCCCcccCC---CchhHHHHHHHHH-HHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHh---------hh----
Q 012002 20 DDSNYCKYD---NQGLQLFTSSLYL-AGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVAA---------QN---- 82 (473)
Q Consensus 20 ~~~~~~~~s---~~~~~~~~s~~~~-~~~~~~~~~g~l~Dr~Grr~~l~~~~~l~~i~~~~~~~~---------~~---- 82 (473)
.++|.+.++ +..+.++-+...+ +..+..++.+++.+++.|.+++-..+..+....+++++. ++
T Consensus 48 ~lKDslvv~~~gae~I~FlK~~~vlP~avif~~iy~kl~~~lt~~~vF~~~~~~F~~fF~LFa~Vi~P~~~~~hp~~~~~ 127 (509)
T COG3202 48 SLKDSLVVTRQGAESISFLKTWGVLPSAVIFTIIYQKLLNILTREKVFYIILGFFLGFFALFAFVIYPYKDILHPDPEFS 127 (509)
T ss_pred HhhhheEeecCcchhhHHHHHHHhchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCHHHH
Confidence 455665554 4556777777777 667888999999999999999988888888888777764 11
Q ss_pred -------------------HHHHHHHHHHHhhhhhhhhh-hhhHHHhhcCCCCCchhhHHHHHHHHHHHHHHHHHHhhhc
Q 012002 83 -------------------LAMLIVGRILLGCGVGFANQ-AVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGT 142 (473)
Q Consensus 83 -------------------~~~l~~~r~l~G~~~~~~~~-~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~ 142 (473)
.|...+...+.=+=...... .-.....|.+..+|-.|..+.++.+.+++..++..+....
T Consensus 128 ~~~~~~~p~~l~~~ili~~~Ws~s~~Yi~aELWgslV~S~lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~~~ 207 (509)
T COG3202 128 RDLFADLPMFLKWFILIVGEWSYSLFYIMAELWGSLVLSLLFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVTSWL 207 (509)
T ss_pred HHHHhhCCccceeeeEeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 12222222222222222222 4455678889888889999999999999999998884433
|
|
| >PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS) | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00042 Score=58.97 Aligned_cols=58 Identities=12% Similarity=0.139 Sum_probs=38.6
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHhhhccccCC--ccchHHHHHhhhHHHHHHHHHhhcc
Q 012002 115 RIRGGLNILFQLNVTIGILFANLVNYGTSHIKS--QWGWRISLGLAGIPAALLTVGSLLV 172 (473)
Q Consensus 115 ~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~--~~~wr~~f~~~~~~~~~~~~~~~~~ 172 (473)
|+|+..+.+...+.++|.++.-..-.......+ ...|++.+.+.+++.++-+++..++
T Consensus 2 k~K~~~s~~n~~gf~iG~ii~~ipF~~~~~~~~~~~~~W~~I~si~~lL~~IpLIly~if 61 (267)
T PF07672_consen 2 KKKSILSQFNPWGFNIGTIIVNIPFLISSSVVIALTNNWQWILSIFILLIFIPLILYIIF 61 (267)
T ss_pred CccceeeeeccccchhhHHHHHhhHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 567777888888889998887666322211111 2359999999888877666664443
|
|
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=97.81 E-value=3.5e-06 Score=81.90 Aligned_cols=159 Identities=12% Similarity=-0.052 Sum_probs=1.5
Q ss_pred HHHHHHhhcchhHHHHHhHHHHHHHcCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHhHHhHHHHHHHHHHHH
Q 012002 238 VALQIFQQCTGINAIMFYAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAI 317 (473)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~ 317 (473)
+++..+.+..........++.+-++++++..++|++.+.+-++.++..++..+..+|..|-|.+..+.++++++.+++.+
T Consensus 8 ~~~~~~~q~~~~g~~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~l 87 (539)
T PF03137_consen 8 LCLLGLFQMMVSGYVNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFAL 87 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhc
Confidence 34444444444444445556666779999999999999999999999999999999988889999999999988888776
Q ss_pred HHhhhhcc---CC----------cc---------------------cc-hhhHHHHHHHHHHHHHhhhcccccccccccc
Q 012002 318 ILGIKVKD---HS----------ED---------------------LH-TGFAVLVVIMICTFISAFAWSWGPLGWLIPS 362 (473)
Q Consensus 318 ~~~~~~~~---~~----------~~---------------------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (473)
........ .. .+ .. ....+.+++..-++.+.......++..+|+-
T Consensus 88 Phf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiD 167 (539)
T PF03137_consen 88 PHFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYID 167 (539)
T ss_dssp ----------------------------------------------------------------SSS-------------
T ss_pred cHhhcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeec
Confidence 54332110 00 00 00 0111233333334444555556678889999
Q ss_pred ccccccchhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 012002 363 ETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSML 396 (473)
Q Consensus 363 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (473)
|..+++..+...|+......+|.+++-.+.+...
T Consensus 168 Dnv~~~~splYiGi~~~~~~lGPa~Gf~lg~~~L 201 (539)
T PF03137_consen 168 DNVSKKNSPLYIGILYAMSILGPALGFLLGSFCL 201 (539)
T ss_dssp ----------------------------------
T ss_pred cccccccCccchhhhhHHhhccHHHHHHHHHHHH
Confidence 9999999999999999988888777766665544
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00074 Score=62.11 Aligned_cols=128 Identities=20% Similarity=0.041 Sum_probs=83.8
Q ss_pred cCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHhHHhHHHHHHHHHHHHHHhhhhccCCcccchhhH-HHHHHH
Q 012002 263 LGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKDHSEDLHTGFA-VLVVIM 341 (473)
Q Consensus 263 ~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 341 (473)
+| +...+-+...++.+..++..+.+-|+.||+|-|....++..+..++..+=.+...- ..++... .+....
T Consensus 75 Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt~ln~iGa~Ir~iss~p-------~v~~~f~~~l~~~G 146 (480)
T KOG2563|consen 75 YG-SSSAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGTVLNGIGAWIRLISSLP-------FVPPLFRRPLTHTG 146 (480)
T ss_pred hc-chHHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHHHHHHHHHHHhhhccCc-------cccccchhhhhHHh
Confidence 55 56667788888999999999999999999999999999998888887776654310 0001111 111111
Q ss_pred HHHHHHhhhccccccccccccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 012002 342 ICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHF 399 (473)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (473)
-.......... ..+..-+..-.+|+++|+.+..+..+.+.+|..++..+-..+..+.
T Consensus 147 q~iaa~Aq~Fi-m~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~llppilV~~~ 203 (480)
T KOG2563|consen 147 QSIAAAAQPFI-LGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLPPILVPSS 203 (480)
T ss_pred HHHHHHhhhHh-hccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhccceecCCC
Confidence 11111111111 1122233345679999999999999999998888877776665443
|
|
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=97.76 E-value=4.3e-05 Score=52.57 Aligned_cols=48 Identities=13% Similarity=0.280 Sum_probs=42.9
Q ss_pred CcccCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHH
Q 012002 23 NYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFF 70 (473)
Q Consensus 23 ~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~l~ 70 (473)
++.|+|..++|.+.++..+...++.+++|.++||+|+++.++....++
T Consensus 28 ~~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~~ 75 (77)
T PF12832_consen 28 KQLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLFM 75 (77)
T ss_pred hhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHHH
Confidence 356999999999999999999999999999999999998887766554
|
|
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00085 Score=66.21 Aligned_cols=197 Identities=12% Similarity=0.038 Sum_probs=137.1
Q ss_pred HHHHHHHHHHhhcchhHHHHHhHHHHHHHcCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHhHHhHHHHHHHH
Q 012002 234 LVIAVALQIFQQCTGINAIMFYAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQT 313 (473)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~ 313 (473)
.+.++.+..+........+...+..+-++++++..+.|++...+-++..+......+...|..|-+.+-++.++++++.+
T Consensus 98 fl~~l~~~~~~q~l~~~y~~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgsl 177 (735)
T KOG3626|consen 98 FLVLLSLAAFAQGLYVGYFNSVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGSL 177 (735)
T ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHHH
Confidence 34555555555555554445555556566999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHhhhhcc------------CC---------------------cc----cchhhHHHHHHHHHHHHHhhhcccccc
Q 012002 314 VIAIILGIKVKD------------HS---------------------ED----LHTGFAVLVVIMICTFISAFAWSWGPL 356 (473)
Q Consensus 314 ~~~~~~~~~~~~------------~~---------------------~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (473)
+.++.-...... .. +. ..+...+++++..-++.+.......++
T Consensus 178 l~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tl 257 (735)
T KOG3626|consen 178 LFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTL 257 (735)
T ss_pred HHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccC
Confidence 887763221100 00 00 011124445555556666666677788
Q ss_pred ccccccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhh------------------h-hhHHHHHHHHHHHHHHH
Q 012002 357 GWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHF------------------K-FGIFLFFSGWVLIMSCF 417 (473)
Q Consensus 357 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~-~~~~~~~~~~~~~~~~~ 417 (473)
..+|+.|...++......|+...+..+|-+++-.+.+....-+ | |+.-+++++.+.+...+
T Consensus 258 GisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a~ 337 (735)
T KOG3626|consen 258 GISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFSAV 337 (735)
T ss_pred CCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHH
Confidence 8999999999888899999999988888777776666554211 1 44555666666666777
Q ss_pred HHhhccCCCCCCh
Q 012002 418 VFFLLPETKNVPI 430 (473)
Q Consensus 418 ~~~~~~~~~~~~~ 430 (473)
.+++.|+..+++.
T Consensus 338 p~f~fPk~lp~~~ 350 (735)
T KOG3626|consen 338 PLFFFPKELPKSQ 350 (735)
T ss_pred HHHhCcccCcccc
Confidence 7778887665443
|
|
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0038 Score=59.52 Aligned_cols=128 Identities=7% Similarity=0.004 Sum_probs=79.0
Q ss_pred cchHHHHHHHHHHHHHH-HHHHHHHHhhcCcchhHhHHhHHHHHHHHHHHHHHhhhhccCCcc----------cchhhH-
Q 012002 268 SASLYSTVITGAVNVLS-TLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKDHSED----------LHTGFA- 335 (473)
Q Consensus 268 ~~~~~~~~~~~~~~~~~-~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~- 335 (473)
+...++.+...+...+. .++.+++++|++|++.+............++.+...- ..+..++ .+....
T Consensus 43 e~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p-~~~~~~p~~~~~~~~~~~~~~~~~ 121 (472)
T TIGR00769 43 EIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYP-LSDLLHPTALADKLLSLLPPGFMG 121 (472)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhc-chhhcCCcHHHHHHHhhcchhhHH
Confidence 34455555444444444 7888999999999999887766666666555554321 1111000 000000
Q ss_pred ------HHHHHHHHHHHHhhhccccc-cccccccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 012002 336 ------VLVVIMICTFISAFAWSWGP-LGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSML 396 (473)
Q Consensus 336 ------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (473)
.+......+..-.++..... +.|.+++|.+..++..+-.++....+++|..+++.+...+.
T Consensus 122 ~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~ 189 (472)
T TIGR00769 122 FIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFS 189 (472)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111222222222222233 67889999999999999999999999999999998888766
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.024 Score=52.18 Aligned_cols=91 Identities=12% Similarity=0.001 Sum_probs=49.5
Q ss_pred hHHHHHHHHHHHhhhhhhhhhhhhHHHhhcCCCCCchhhHHHHHHHHHHHHHHHHHHhhhccccCCc--cchHHHHHhhh
Q 012002 82 NLAMLIVGRILLGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTSHIKSQ--WGWRISLGLAG 159 (473)
Q Consensus 82 ~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~--~~wr~~f~~~~ 159 (473)
.++..++.-++.|++.|..........++ +|++.-+ -..+|.++++++..++........++ .+=...|.+..
T Consensus 116 ff~vt~~~vv~~~~a~a~~qgs~~G~a~~-~P~~ytq----avm~G~a~aG~l~Sl~~i~tka~~~~~~~sA~~yF~~s~ 190 (406)
T KOG1479|consen 116 FFLVTLIIVVLLNLANAVVQGSLYGLAGL-FPSEYTQ----AVMSGQALAGTLTSLLRILTKAAFSDSRTSALIYFITST 190 (406)
T ss_pred hHHHHHHHHHHHhhhhhhhccchhhhhhc-CCHHHHH----HHHhcchhHhHHHHHHHHHHHHhcCCCCceeehhHHHHH
Confidence 46677777888899999888888887776 4555432 22333444444444432222222221 12223344455
Q ss_pred HHHHHHHHHhhcccCChh
Q 012002 160 IPAALLTVGSLLVTDTPN 177 (473)
Q Consensus 160 ~~~~~~~~~~~~~~e~p~ 177 (473)
++.+++.++...+|+.|-
T Consensus 191 ~~~llC~i~y~~l~~lpf 208 (406)
T KOG1479|consen 191 VILLLCFVLYLVLPKLPF 208 (406)
T ss_pred HHHHHHHHHHHHhhcchH
Confidence 555555555556666663
|
|
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.098 Score=49.49 Aligned_cols=172 Identities=8% Similarity=-0.060 Sum_probs=91.7
Q ss_pred HHHHHHHHHhhcchhHHHHHhHHHHHHH-cCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHhHHhHHHHHHHH
Q 012002 235 VIAVALQIFQQCTGINAIMFYAPVLFKT-LGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQT 313 (473)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~ 313 (473)
.+.+....++...+--...+-.+.++.+ +.-+-...+.+...-.+..++.....|...||..|.+......+..-++..
T Consensus 4 ~~~Ly~sh~ls~w~dR~w~Fa~~L~L~~i~p~sLl~~siygl~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Qn~sv~ 83 (432)
T PF06963_consen 4 LWRLYLSHFLSTWGDRMWEFAVPLFLISIFPGSLLPVSIYGLVRSLSAILFGPWVGRWIDRSPRLKVIRTSLVVQNLSVA 83 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhhHHHHHHHhCCcchhhHHHHHHHHHHHHH
Confidence 3445555666666666666777777766 333444555666667777888888899999999999987777665444443
Q ss_pred HHHHHHhhhhccCCccc-chhhHHHHHHHHHHHHHhhhcccccccccc----ccccc--cccchhhhHHHHHHHHHHHHH
Q 012002 314 VIAIILGIKVKDHSEDL-HTGFAVLVVIMICTFISAFAWSWGPLGWLI----PSETF--PLETRSAGQSVTVCVNLLFTF 386 (473)
Q Consensus 314 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~--p~~~~~~~~~~~~~~~~~~~~ 386 (473)
+................ +.......+............+......++ +..+. +++.....++...-+-.+...
T Consensus 84 ~s~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~i~~Las~~~~iavERDWVvvi~~~~~~~La~~NA~mRRIDL~ckl 163 (432)
T PF06963_consen 84 ASCALFLLLLSYPSSSSQSSWLFIALFALLILLGAIERLASIANTIAVERDWVVVIAGGDPGALARMNATMRRIDLFCKL 163 (432)
T ss_pred HHHHHHHHHHhCCccccccchHHHHHHHHHHHHHHHHHHHHhhhhheeccchhhhhcCCChhhHHHHHHHHHHHHHHHHH
Confidence 33333222111111000 011111112211222211111111111111 11222 334445556666666667899
Q ss_pred HHHHHHHHHhhhhhhhHHHH
Q 012002 387 VIAQAFLSMLCHFKFGIFLF 406 (473)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~ 406 (473)
++|.+.|.+.+..+......
T Consensus 164 laPl~vG~l~t~~s~~~~~~ 183 (432)
T PF06963_consen 164 LAPLFVGLLMTFASPVIAAI 183 (432)
T ss_pred HHHHHHHHHhhccCHHHHHH
Confidence 99999999998766554333
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0025 Score=60.94 Aligned_cols=155 Identities=17% Similarity=0.111 Sum_probs=87.4
Q ss_pred HHHHHHcCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcC-----cchhHhHHhHHHHHHHHHHHHHHhhhhccCCcccc
Q 012002 257 PVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVG-----RRMLLLEAGIQMFLSQTVIAIILGIKVKDHSEDLH 331 (473)
Q Consensus 257 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (473)
+++.+++|+++.+...+.....+...+ .++.|.++|-+. ||..+.++.++..++...+..... .
T Consensus 14 ~~l~~~l~ls~~~~~~~~~~~~lPw~~-Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~----------~ 82 (433)
T PF03092_consen 14 PFLKDDLGLSPAQLQRLSSLASLPWSI-KPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPA----------S 82 (433)
T ss_pred HHHHHHcCCCHHHHHHHHHHHhCchHH-hhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhccc----------c
Confidence 445566999998887776666665544 678899999862 444455555444444444333211 0
Q ss_pred hhhHHHHHHHHHHHHHhhhccccccccccccccc---cccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHH
Q 012002 332 TGFAVLVVIMICTFISAFAWSWGPLGWLIPSETF---PLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHFKFGIFLFFS 408 (473)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (473)
..........+.+...+....- .+.-++..|.. |.+ +|...+.......+|+.++..+.|.+.+..++...+.+.
T Consensus 83 ~~s~~~~~~~l~la~~g~a~~D-V~aDa~vvE~~~~~p~~-~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~ 160 (433)
T PF03092_consen 83 ESSAAIAVVLLFLASFGYAFAD-VAADALVVELARREPES-RGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLIS 160 (433)
T ss_pred cchhhhHHHHHHHHHHHHHHHH-HhhhHHHHHHhhcCCch-hHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHH
Confidence 0111111112222222222111 13344445654 434 788888888899999999999999998887765555444
Q ss_pred HHHHHHH-HHHHhhccC
Q 012002 409 GWVLIMS-CFVFFLLPE 424 (473)
Q Consensus 409 ~~~~~~~-~~~~~~~~~ 424 (473)
....+.. +...+..+|
T Consensus 161 ~~~~~l~~~~~~~~~~e 177 (433)
T PF03092_consen 161 AALPLLMLIVALFLLEE 177 (433)
T ss_pred HHHHHHHHHHHHHhhhh
Confidence 4443333 334444444
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0031 Score=43.85 Aligned_cols=70 Identities=16% Similarity=0.055 Sum_probs=60.6
Q ss_pred hHHHHHhHHHHHHHcCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHhHHhHHHHHHHHHHHHH
Q 012002 249 INAIMFYAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAII 318 (473)
Q Consensus 249 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (473)
-+.+.-.+|.+.++.++|..+++++.+.+.++.++|.+...++.++.++++.+..+.+...+........
T Consensus 8 RFayTplLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~ 77 (85)
T PF06779_consen 8 RFAYTPLLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALT 77 (85)
T ss_pred HHHHHhHhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667899999999999999999999999999999999999999888888888888777777776664
|
Note that many members are hypothetical proteins. |
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.023 Score=52.80 Aligned_cols=157 Identities=11% Similarity=0.006 Sum_probs=92.5
Q ss_pred hHHHHHHH-cCCCCcchHHHHHHHH-HHHHHHHHHHHHHHhhcCcchhHhHHhHHHHHHHHHHHHHHhhhhccCCcccch
Q 012002 255 YAPVLFKT-LGFGGSASLYSTVITG-AVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKDHSEDLHT 332 (473)
Q Consensus 255 ~~~~~~~~-~g~~~~~~~~~~~~~~-~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (473)
..|++.+. .|++..+..--..+.+ =..+...+....+.|.++.|++++...+...+...++.+.-
T Consensus 26 l~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~~------------- 92 (412)
T PF01770_consen 26 LTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFGT------------- 92 (412)
T ss_pred chHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHC-------------
Confidence 34555554 7888776543322222 24455566778899999999999988777666666555431
Q ss_pred hhHHHHHHHHHHHHHhhhccccccccccccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhh--hhhHHHHHHHH
Q 012002 333 GFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHF--KFGIFLFFSGW 410 (473)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 410 (473)
......+.-++.+.....- ...++++=...|+++--++.+.......+|..++..++-.+.... .+.....+...
T Consensus 93 -sv~~mq~~q~~yg~~~a~e--vay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~~L~~isl~ 169 (412)
T PF01770_consen 93 -SVLAMQLMQFFYGLATAAE--VAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYFQLNYISLA 169 (412)
T ss_pred -cHHHHHHHHHHHHHHHHHH--HHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 1122222222222222211 123344445567777788888888888888777777666555422 24444455555
Q ss_pred HHHHHHHHHhhccCCCC
Q 012002 411 VLIMSCFVFFLLPETKN 427 (473)
Q Consensus 411 ~~~~~~~~~~~~~~~~~ 427 (473)
...++++..+++|..++
T Consensus 170 ~~~~a~~~~~fLP~~~~ 186 (412)
T PF01770_consen 170 SVSLALLIALFLPMPKR 186 (412)
T ss_pred HHHHHHHHHHHcCCCCc
Confidence 56666777777877554
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.045 Score=43.58 Aligned_cols=112 Identities=11% Similarity=-0.023 Sum_probs=70.4
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHhHHhHHHHHHHHHHHHHHhhhhccCCcccchhhHHHHHHHHHHHH
Q 012002 267 GSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKDHSEDLHTGFAVLVVIMICTFI 346 (473)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (473)
+.....-.++......++.++.+.+.+++|.|+.+.++.+...+....... + ..+..+....+.+
T Consensus 36 ~~~G~~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~~~-------------~--~~~~l~~~s~l~G 100 (156)
T PF05978_consen 36 AGLGYYSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASFFY-------------P--NSYTLYPASALLG 100 (156)
T ss_pred ccccHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh-------------h--hHHHHHHHHHHHh
Confidence 333344556666777888888999999999999999887766655444332 1 1233333333333
Q ss_pred HhhhccccccccccccccccccchhhhHHHHHHHHHHHHHHHHHHHHH
Q 012002 347 SAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLS 394 (473)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (473)
.+.+..+.+. -.++.+...++.+++-.++.-.+...+..++..+.-.
T Consensus 101 ~~~a~lW~aq-g~ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~ 147 (156)
T PF05978_consen 101 FGAALLWTAQ-GTYLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLFF 147 (156)
T ss_pred hhhHHhhHhh-hHHHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333332 3455677778888888888888877766666655443
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.07 Score=50.56 Aligned_cols=100 Identities=18% Similarity=0.208 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHHHHHhhh---hhhhHHHHHHHHHHHHHHHHHHHHh------------------hhHHHHHHHHHHHhhh
Q 012002 38 SLYLAGLTATFFASYTTR---RLGRRLTMLIAGIFFIAGVAFNVAA------------------QNLAMLIVGRILLGCG 96 (473)
Q Consensus 38 ~~~~~~~~~~~~~g~l~D---r~Grr~~l~~~~~l~~i~~~~~~~~------------------~~~~~l~~~r~l~G~~ 96 (473)
...++..+++.+.+.+++ ++||++++.++..+..++.++.-.+ +++...++.-+++|++
T Consensus 287 ~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~l~G~~ 366 (461)
T KOG3098|consen 287 GIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGFLLGFG 366 (461)
T ss_pred HHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHHHHHhhH
Confidence 334455556666677765 5789999999999888888876554 2466788889999999
Q ss_pred hhhhhhhhhHHHhhcCCCCCchhhHHHHHHHHHHHHHHHHHH
Q 012002 97 VGFANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLV 138 (473)
Q Consensus 97 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~ 138 (473)
.+......+.++.+.+ +++|..+.++...-..++..++...
T Consensus 367 D~~~~t~~~~ii~~~~-~~~~~~~fsi~kfyq~~~s~v~~f~ 407 (461)
T KOG3098|consen 367 DACFNTQRYVIIALLY-PDDRAQAFSLFKFYQSVASCVAFFF 407 (461)
T ss_pred HHHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHHhhh
Confidence 9999999999999999 5678888888888888877776655
|
|
| >PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.00038 Score=63.22 Aligned_cols=82 Identities=13% Similarity=0.083 Sum_probs=0.0
Q ss_pred HHHhhhhhhhhhhhhHHHhhcCCCCCchhhHHHHHHHHHHHHHHHHHHhhhccccCCccchH--HHHHhhhHHHHHHHHH
Q 012002 91 ILLGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTSHIKSQWGWR--ISLGLAGIPAALLTVG 168 (473)
Q Consensus 91 ~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~wr--~~f~~~~~~~~~~~~~ 168 (473)
++.|++.+........+.+. +|++. ......+.++++++..++-.......+...+. ..|.+..++.+++++.
T Consensus 5 ~~~~~~~~~~q~s~~glas~-~p~~y----~~a~~~Gq~~aGv~~s~l~ii~~~~~~~~~~~a~~yF~~a~~i~i~~~~~ 79 (309)
T PF01733_consen 5 ALIGFANAVLQSSLFGLASL-FPPKY----TQAVMIGQGLAGVIVSLLRIITKASGSDVKTSAFIYFIIAVLIVILCIIL 79 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEHhhhHHHhccHHHHHhc-CCHHH----HHHHHhhccHHHHHHHHHHHHHHHhhhccchhhhhHHHHHHHHHHHHHHH
Confidence 45677777777777777775 66554 34444555555555554433222222222223 2233333333444444
Q ss_pred hhcccCChh
Q 012002 169 SLLVTDTPN 177 (473)
Q Consensus 169 ~~~~~e~p~ 177 (473)
.+.++..|.
T Consensus 80 ~~~l~~~~~ 88 (309)
T PF01733_consen 80 YFILPRSPF 88 (309)
T ss_dssp ---------
T ss_pred HHHhccChH
Confidence 555666553
|
Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A. |
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.084 Score=47.66 Aligned_cols=135 Identities=16% Similarity=0.050 Sum_probs=80.3
Q ss_pred HHHHhHHHHHHHcCCCC--cchHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHhHHhHHHHHHHHHHHHHHhhhhccCCc
Q 012002 251 AIMFYAPVLFKTLGFGG--SASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKDHSE 328 (473)
Q Consensus 251 ~~~~~~~~~~~~~g~~~--~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (473)
......+.+..+.+.+. ...+.......+...++.+..|.+.||.|||+.+..+.....++.......
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~---------- 89 (338)
T COG0477 20 LLSPALPLLLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALA---------- 89 (338)
T ss_pred hHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhC----------
Confidence 34445555556655554 367788888888888888999999999999977766655423332222221
Q ss_pred ccchhhHHHHHHHHHHHHHhhhccccccccccccccccc-cchhhhHHHHHH-HHHHHHHHHHHHHHHHhhh
Q 012002 329 DLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPL-ETRSAGQSVTVC-VNLLFTFVIAQAFLSMLCH 398 (473)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 398 (473)
.....+........ .+.......+....+..|..|. +.|+...+.... ...++..+++.+.+.+...
T Consensus 90 --~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (338)
T COG0477 90 --PNVGLALLLILRLL-QGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGA 158 (338)
T ss_pred --ccchHHHHHHHHHH-HHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11011111111111 2222223445666777888887 677888888777 4666777777666655544
|
|
| >KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.52 Score=43.71 Aligned_cols=59 Identities=8% Similarity=-0.164 Sum_probs=31.1
Q ss_pred HHHHHHHHHhhcchhHHHHHhHHHHHHHcCCCCcchHHHHHHHHHHHHHHHHHHHHHHhh
Q 012002 235 VIAVALQIFQQCTGINAIMFYAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDK 294 (473)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~ 294 (473)
.+.+++...........+.+-.+++.+++-.+.. +-.......+.+.+...+.-.+--+
T Consensus 20 ~~i~~llGiG~LlpWN~fiTa~~y~~~~~~~~~~-~~~F~~~~~~~a~i~~ll~~~~n~~ 78 (406)
T KOG1479|consen 20 YLIFLLLGIGTLLPWNMFITASDYYYYRFPGYHN-SKNFTSSYTLAAQIPLLLFNLLNAF 78 (406)
T ss_pred HHHHHHHhcccccchHhhhccHHHHHhhcCCCch-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555556667777777787777433333 3344444444444444444444333
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.19 Score=49.19 Aligned_cols=139 Identities=13% Similarity=0.037 Sum_probs=78.1
Q ss_pred ccCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHH-HHHHHH-HHHHHH----HHhhhH-HHHHHHHHHHhhhh
Q 012002 25 CKYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLI-AGIFFI-AGVAFN----VAAQNL-AMLIVGRILLGCGV 97 (473)
Q Consensus 25 ~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~-~~~l~~-i~~~~~----~~~~~~-~~l~~~r~l~G~~~ 97 (473)
+|-+..+.+.+.++++.|.++|+.+++++.++.-++...+- +..+.+ ++..+. ++...+ ..++..-++.|+..
T Consensus 45 ~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~~~~~~~~e~~i~l~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~l~ 124 (521)
T PRK03612 45 LGDSVTQFSTVIGLMLFAMGVGALLSKYLLRDAAAGFVAVELLLALLGGLSALILYAAFAFQGLSRLLLYVLVLLIGLLI 124 (521)
T ss_pred hCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36677888999999999999999999988754333332211 111111 111111 111111 22234456678888
Q ss_pred hhhhhhhhHHHhhcCCCCCchhhHHHHHHHHHHHHHHHHHHhhhccccCCccchHHHHHhhhHHHHHHH
Q 012002 98 GFANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLT 166 (473)
Q Consensus 98 ~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~ 166 (473)
|+..|....+..+... ++-++..|-.+....+|.++|.++..+. +....|-....++.+.+.+++.
T Consensus 125 G~~~Pl~~~~~~~~~~-~~~g~~~g~ly~~ntlGa~~G~l~~~~v--Llp~lG~~~t~~~~a~l~~~~a 190 (521)
T PRK03612 125 GMEIPLLMRILQRIRD-QHLGHNVATVLAADYLGALVGGLAFPFL--LLPRLGLIRTAALTGSLNLLAA 190 (521)
T ss_pred HHHHHHHHHHHHhccc-cchhhhhhhhHhHHhHHHHHHHHHHHHH--HHHhcchHHHHHHHHHHHHHHH
Confidence 8888888887765432 2245566777777777777777774332 1222343333334444444333
|
|
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.0072 Score=55.93 Aligned_cols=158 Identities=16% Similarity=0.048 Sum_probs=95.6
Q ss_pred HHHHHHHHHhhcchhHHHHHhHHHHHHHcCCCCcchHHHHHHHHHHHHHHHHHHHHHHhh----cCcchhHhHHh-HHHH
Q 012002 235 VIAVALQIFQQCTGINAIMFYAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDK----VGRRMLLLEAG-IQMF 309 (473)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~----~~~~~~~~~~~-~~~~ 309 (473)
++......+..-.++..-..|.|.+++..|.+..-.+.+....-+.+++.+++.|..+|| +||||..+... ....
T Consensus 34 li~v~~ia~Gvqf~wA~elsy~tPyl~~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~ 113 (498)
T KOG0637|consen 34 LISVASIAAGVQFGWALELSYLTPYLQSLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIA 113 (498)
T ss_pred HHHHHHHHHHHHHHHHHHhccccHHHHHcCCCcccccccccccccccceecccccccccccccccccccchHHHhhHHHH
Confidence 333333334444455666778888889999999888888888888999999999999997 67877766544 4445
Q ss_pred HHHHHHHHHHhhhhccCCcccc-h--hhHHHHHHHHHHHHHhhhccccccccccccccccccchhh-hHHHHHHHHHHHH
Q 012002 310 LSQTVIAIILGIKVKDHSEDLH-T--GFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSA-GQSVTVCVNLLFT 385 (473)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-~~~~~~~~~~~~~ 385 (473)
++.+++.....+...-.++... . ......++.+.+.-........| .-++..++...+.+.+ +++....+..+|+
T Consensus 114 ~~l~Lig~aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp-~ra~L~Dl~~~d~~~~~Ans~f~~f~avGn 192 (498)
T KOG0637|consen 114 VSLFLIGYAADIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGP-CRALLADLARGDAKKTRANSVFSFFMAVGN 192 (498)
T ss_pred HHHhhhhhHhhhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhh-HHHHHHHhccChhhhhccchhHHHHHHhcc
Confidence 5555555544332111111111 1 11222222223333333333333 3456678776666666 8888888888888
Q ss_pred HHHHHHHH
Q 012002 386 FVIAQAFL 393 (473)
Q Consensus 386 ~~~~~~~~ 393 (473)
.++-...+
T Consensus 193 vLGY~~g~ 200 (498)
T KOG0637|consen 193 VLGYALGS 200 (498)
T ss_pred eeeeeccc
Confidence 77655554
|
|
| >KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.69 Score=45.76 Aligned_cols=167 Identities=11% Similarity=0.025 Sum_probs=103.2
Q ss_pred HHhHHHHHHHcCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhc-CcchhHhHHhHHHHHHHHHHHHHHhhhhccCC----
Q 012002 253 MFYAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKV-GRRMLLLEAGIQMFLSQTVIAIILGIKVKDHS---- 327 (473)
Q Consensus 253 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 327 (473)
.....++...++.+...+...............+.+++++|.+ ||-+.+.++.++..++..++............
T Consensus 58 ~nlv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~~~ 137 (571)
T KOG1237|consen 58 SNLVTYLTLELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMCKF 137 (571)
T ss_pred hHHHHHHHHHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccC
Confidence 4445555566777777777777777777788889999999975 88899998888888887777666655432211
Q ss_pred ------cccchhhHHHHHHHHHHHHHhhhccccccccccccccccc----cch--hhhHHHHHHHHHHHHHHHHHHHHHH
Q 012002 328 ------EDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPL----ETR--SAGQSVTVCVNLLFTFVIAQAFLSM 395 (473)
Q Consensus 328 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~----~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (473)
.+.+.......+............+.-|....+.+|-++. +.+ ..-+.......+.|..++..+..++
T Consensus 138 ~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vyi 217 (571)
T KOG1237|consen 138 KPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLVYI 217 (571)
T ss_pred CCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHHhh
Confidence 0111222222333333333334445556666677777762 222 3566677777788888888777777
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHH
Q 012002 396 LCHFKFGIFLFFSGWVLIMSCFVF 419 (473)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~ 419 (473)
-++.+|..-+.....+.+++++++
T Consensus 218 q~~~~w~lgf~i~~~~~~lai~iF 241 (571)
T KOG1237|consen 218 QDNVGWKLGFGIPTVLNALAILIF 241 (571)
T ss_pred hhcccceeeccHHHHHHHHHHHHH
Confidence 677766654444444444444333
|
|
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.34 Score=46.76 Aligned_cols=117 Identities=14% Similarity=0.040 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHHHhhcCcchhHhHHhHHHHHHHHHHHHHHhhhhccCCccc----------chhhHH-------HHHHHH
Q 012002 280 VNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKDHSEDL----------HTGFAV-------LVVIMI 342 (473)
Q Consensus 280 ~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~-------~~~~~~ 342 (473)
+.++...+..+++++++++++..+..........++++... +..+.-++. +....+ +.....
T Consensus 71 ~a~~f~~~y~kl~n~~s~~~lFy~~~~~F~~fF~~f~~vly-P~~~~lhp~~~~~~~~~~~~~~~~~~i~~~~~Wt~slf 149 (491)
T PF03219_consen 71 VAILFTILYSKLSNRLSREKLFYIIIIPFLGFFALFAFVLY-PNRDILHPDAFADKLLAILPPGFKGFIAMFRNWTFSLF 149 (491)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHh-hchhhcCCCHHHHHhhhhccchHHHHHHHHHHHHHHHH
Confidence 34555677889999999999888776666666666665542 211111000 011111 111112
Q ss_pred HHHHHhhhcc-ccccccccccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 012002 343 CTFISAFAWS-WGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLC 397 (473)
Q Consensus 343 ~~~~~~~~~~-~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (473)
.+..-.++.. ..-+.|.++.|.++.++..+..++.....+++..+++.+.....+
T Consensus 150 Yv~aElwgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~ 205 (491)
T PF03219_consen 150 YVMAELWGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSS 205 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222222222 222568899999999999999999999999999999988887776
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=95.58 E-value=0.11 Score=48.46 Aligned_cols=110 Identities=15% Similarity=0.092 Sum_probs=78.7
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHH-----HHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhhh
Q 012002 28 DNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIF-----FIAGVAFNVAAQNLAMLIVGRILLGCGVGFANQ 102 (473)
Q Consensus 28 s~~~~~~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~l-----~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~ 102 (473)
..++..+....|.+|-.++.--...+ |+ |++.+.+.+- ..+...+.-+.++.|..++.-+..|+..|..++
T Consensus 279 ~r~~Y~~Y~~~YQ~GVFISRSS~~~~--ri--r~lwils~LQ~~nl~~~~l~s~~~fipsi~ivf~lif~eGLlGGa~YV 354 (402)
T PF02487_consen 279 PRDQYRWYQLLYQLGVFISRSSLPFF--RI--RRLWILSLLQVINLVFLLLQSWYRFIPSIWIVFVLIFYEGLLGGASYV 354 (402)
T ss_pred HHHHHHHHHHHHHHHHhhhhcceeee--eh--hhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhHHHH
Confidence 35566677777776665553222111 33 3333332222 222233344568899999999999999999999
Q ss_pred hhhHHHhhcCCCCCchhhHHHHHHHHHHHHHHHHHHhhh
Q 012002 103 AVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYG 141 (473)
Q Consensus 103 ~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~ 141 (473)
-....+.|-.++++|..+++....+.++|.+++.+++..
T Consensus 355 NtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~ 393 (402)
T PF02487_consen 355 NTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLP 393 (402)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998544
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=95.52 E-value=1.1 Score=42.99 Aligned_cols=23 Identities=17% Similarity=0.244 Sum_probs=13.5
Q ss_pred hHHHHHHHHHHHHHHHHHhhccC
Q 012002 402 GIFLFFSGWVLIMSCFVFFLLPE 424 (473)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~ 424 (473)
..++..+.+..+++++++..+++
T Consensus 175 ~~YF~~a~~v~l~~i~~~~~l~k 197 (437)
T TIGR00939 175 LGYFGTPCVVQLICIVCYLLLPK 197 (437)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhc
Confidence 35555566666666666665543
|
|
| >KOG3097 consensus Predicted membrane protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.27 E-value=1.1 Score=40.07 Aligned_cols=99 Identities=23% Similarity=0.347 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhhhhhhHHHhhcCCC--CC
Q 012002 39 LYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVAAQNLAMLIVGRILLGCGVGFANQAVPLFLSEIAPT--RI 116 (473)
Q Consensus 39 ~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~l~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~--~~ 116 (473)
..+..+..+++.+.+..++|.|.++.++...+... +..-+=+.+..++-.-...|+|.+..+..--+|+++.-.. ++
T Consensus 67 ~y~~l~~s~m~~~~~Ir~~g~K~tm~lav~~Y~ly-iA~Nl~pr~~tlVPa~~~~G~aa~p~W~SkgtYlT~~g~~ya~~ 145 (390)
T KOG3097|consen 67 LYLSLIDSSMFMPLLIRFLGTKWTMVLAVFPYALY-IAANLEPRYETLVPAGLVLGMAAGPIWASKGTYLTPMGQNYANQ 145 (390)
T ss_pred hhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH-HHhhcchhHHhhccHHHhhccccccccccCcceecHHHHHHHHh
Confidence 34455666677779999999999999988887653 3333447788899999999999999998877777665432 22
Q ss_pred c-------------hhhHHHHHHHHHHHHHHHHHH
Q 012002 117 R-------------GGLNILFQLNVTIGILFANLV 138 (473)
Q Consensus 117 r-------------~~~~~~~~~~~~lG~~~~~~~ 138 (473)
| +....++++..-.|..++.++
T Consensus 146 ~~~q~~~~~~~~ffg~Ffii~~~~qv~gn~issli 180 (390)
T KOG3097|consen 146 RGEQAGDGMKVRFFGEFFIIFQCAQVWGNLISSLI 180 (390)
T ss_pred hhhhccCceeeeehhHHHHHHHHHHHHHHHHHHHH
Confidence 3 345566667777776666665
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=95.14 E-value=1.5 Score=43.06 Aligned_cols=32 Identities=16% Similarity=-0.005 Sum_probs=24.0
Q ss_pred cCCCCcchHHHHHHHHHHHHHHHHHHHHHHhh
Q 012002 263 LGFGGSASLYSTVITGAVNVLSTLVSIYSVDK 294 (473)
Q Consensus 263 ~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~ 294 (473)
+|-+....+.+.+.+.++..+|+.+++++.++
T Consensus 45 ~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~ 76 (521)
T PRK03612 45 LGDSVTQFSTVIGLMLFAMGVGALLSKYLLRD 76 (521)
T ss_pred hCchHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 67777777778888888888888887776533
|
|
| >KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.05 E-value=0.015 Score=50.85 Aligned_cols=139 Identities=10% Similarity=0.064 Sum_probs=86.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhhhhhhHHHhhc
Q 012002 32 LQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVAAQNLAMLIVGRILLGCGVGFANQAVPLFLSEI 111 (473)
Q Consensus 32 ~~~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~l~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~ 111 (473)
.|.+.-+-.+-..+..+.+....||+---+=..+..++.+.+.++.+++++.++-+.+-.+..++.|.....-..+-+.
T Consensus 64 tg~VLLaDilPsL~iKl~~Pff~~rfpf~~Ri~~~v~~sa~s~~lVafs~s~~~sL~GV~~aSissGlGEiTFL~lss~- 142 (409)
T KOG3880|consen 64 TGAVLLADILPSLAIKLTAPFFIHRFPFGFRIALVVLLSALSFFLVAFSNSVPMSLLGVVFASISSGLGEITFLALSSR- 142 (409)
T ss_pred cchhhhhhhhHHHHHHHhchhhhhhcccchHHHHHHHHHhcceEEEEeccchhHHHhhhhhhhhcCCcceeehhhhhcc-
Confidence 4444555556666667777778888644333455667778888999999999999999999988888766555554433
Q ss_pred CCCCCchhhHHHHHHHHHHHHHHHHHHhhhccccCCccchHHHHHhhhHHHHHHHHHhhcccCCh
Q 012002 112 APTRIRGGLNILFQLNVTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVGSLLVTDTP 176 (473)
Q Consensus 112 ~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p 176 (473)
++ ....+.++.+.+.+.++|..--.++... .+.+-|...++...+-++.+...+++.++|
T Consensus 143 Y~----~~~i~~WSSGTGgAGliGa~SYa~lT~~-~~~spk~Tlli~l~lP~lfa~~yf~lL~~p 202 (409)
T KOG3880|consen 143 YP----SIVIAGWSSGTGGAGLIGASSYAFLTSW-ANLSPKSTLLIMLFLPALFAFAYFFLLKSP 202 (409)
T ss_pred CC----CceeccccCCCCcchhhhhhHHHHHhhh-cCCChhhHHHHHHHHHHHHHHHHHheeCCC
Confidence 32 2334555555555556665442223222 235677777777766666665555543333
|
|
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=94.32 E-value=0.25 Score=46.40 Aligned_cols=119 Identities=8% Similarity=-0.043 Sum_probs=73.0
Q ss_pred hhHhHHhHHHHHHHHHHHHHHhhhhccCCcccchhhHHHHHHHHHHHHHhhhcccccccccccccccccc---chhhhHH
Q 012002 299 MLLLEAGIQMFLSQTVIAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLE---TRSAGQS 375 (473)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~---~~~~~~~ 375 (473)
|.+.++.++..++.+++.+....... . .........+.+. .......+.-|....+..|.++++ .|.+...
T Consensus 2 ktI~~g~~~~~~G~~ll~l~~~~~~~--~---~~~~~~~~~~gL~-lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~ 75 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLTLSAIPPSL--P---SGIQLGLFYIGLA-LIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFN 75 (372)
T ss_dssp HHHHHHHHHHHHHHHH--HHHTSSSC-----------CHHHHHHH-HHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhHHHHhcchh--h---hhHHHHHHHHHHH-HHHhccccccccHHHHHHHHhcccchhhhhhhHH
Confidence 45666777777777775554321100 0 0001112222222 223333344455566667877654 4667788
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhcc
Q 012002 376 VTVCVNLLFTFVIAQAFLSMLCHFKFGIFLFFSGWVLIMSCFVFFLLP 423 (473)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (473)
......++|..++..+.+++.++.++...+.+..++.+++++.+..-+
T Consensus 76 ~fY~~in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~~~ 123 (372)
T PF00854_consen 76 WFYWGINIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLSGR 123 (372)
T ss_dssp HHHHHHHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHhhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHhCC
Confidence 889999999999999999999999999988888888888777666553
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >COG3202 ATP/ADP translocase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=94.07 E-value=2.1 Score=40.67 Aligned_cols=131 Identities=9% Similarity=-0.089 Sum_probs=79.1
Q ss_pred CcchHHHHHHHHH-HHHHHHHHHHHHHhhcCcchhHhHHhHHHHHHHHHHHHHHhhhhccCCcc-----------cchh-
Q 012002 267 GSASLYSTVITGA-VNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKDHSED-----------LHTG- 333 (473)
Q Consensus 267 ~~~~~~~~~~~~~-~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~- 333 (473)
++....+-...-+ +.++..++..++.+++.+.++............++++.... +..+..++ .+..
T Consensus 60 ae~I~FlK~~~vlP~avif~~iy~kl~~~lt~~~vF~~~~~~F~~fF~LFa~Vi~-P~~~~~hp~~~~~~~~~~~~p~~l 138 (509)
T COG3202 60 AESISFLKTWGVLPSAVIFTIIYQKLLNILTREKVFYIILGFFLGFFALFAFVIY-PYKDILHPDPEFSRDLFADLPMFL 138 (509)
T ss_pred chhhHHHHHHHhchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHh-ccccccCCCHHHHHHHHhhCCccc
Confidence 4444444343334 56677788889999999999888776666666666665543 11111000 0100
Q ss_pred -------hHHHHHHHHHHHHHhhhccccccccccccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 012002 334 -------FAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCH 398 (473)
Q Consensus 334 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (473)
..|...+.....-........-+.|..+.|....++..+-+++.+...+++..+++.+..+..++
T Consensus 139 ~~~ili~~~Ws~s~~Yi~aELWgslV~S~lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~~~~k~ 210 (509)
T COG3202 139 KWFILIVGEWSYSLFYIMAELWGSLVLSLLFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVTSWLSKH 210 (509)
T ss_pred eeeeEeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 01211111111111122222225677888999999999999999999999999999988887763
|
|
| >PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ] | Back alignment and domain information |
|---|
Probab=93.25 E-value=0.88 Score=43.33 Aligned_cols=68 Identities=15% Similarity=0.117 Sum_probs=35.4
Q ss_pred HHHHHHHhhcchhHHHHHhHHHHHHH--cCCCCcchHHHHH---HHHHHHHHHHHHHHHHHhhcCcchhHhHH
Q 012002 237 AVALQIFQQCTGINAIMFYAPVLFKT--LGFGGSASLYSTV---ITGAVNVLSTLVSIYSVDKVGRRMLLLEA 304 (473)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~~~~~~~~~~---~~~~~~~~~~~~~g~l~d~~~~~~~~~~~ 304 (473)
.+.+.++.+........--.|.++++ .+.+-.+.+.... ++++=-+=+.++=...+.|+||||..++-
T Consensus 4 lL~~LY~lQGiP~GL~~gsiPflL~~~~~~~sy~q~~~fSla~~PfSlKlLWaPiVDs~y~~~~GRRKSWiiP 76 (544)
T PF13000_consen 4 LLVLLYFLQGIPLGLAFGSIPFLLQSMAKKVSYSQQAIFSLASYPFSLKLLWAPIVDSVYSKRIGRRKSWIIP 76 (544)
T ss_pred HHHHHHHHcCcccccccccchhhhccccCCCChhHheeeeeeechhHHHHhhhhhhhhhcccccCCcchhhhH
Confidence 34455556666554444567888877 5665555443221 12222222222333445578998876543
|
This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane |
| >KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.15 E-value=2.1 Score=39.33 Aligned_cols=66 Identities=17% Similarity=0.156 Sum_probs=42.2
Q ss_pred HHHHHHHHHhhcchhHHHHHhHHHHHHHcCCCCcchHHHHHHHHHHHHHHHHHHHHHHh-----hcCcchhHhH
Q 012002 235 VIAVALQIFQQCTGINAIMFYAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVD-----KVGRRMLLLE 303 (473)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d-----~~~~~~~~~~ 303 (473)
+..+.+.+..+...+.... -.|.+++..|.|-+..+.......= .---+++..++| |+||||..++
T Consensus 33 illLl~LYllQGiP~GL~~-~iP~lL~ak~vSyt~~a~fS~ay~P--~sLKllWaPiVDs~y~k~~GrrksWvv 103 (510)
T KOG3574|consen 33 ILLLLFLYLLQGIPLGLIG-AIPLLLQAKGVSYTSQAIFSFAYWP--FSLKLLWAPIVDSVYSKRFGRRKSWVV 103 (510)
T ss_pred HHHHHHHHHHcCCchhHhh-hhHHHhcCCCcchhhhhhhhhhhhH--HHHHHHHHhhhHHHHHHhhccccceee
Confidence 5556666777777766555 8899998777776555443332221 122456777777 9999887654
|
|
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.83 E-value=2.1 Score=37.28 Aligned_cols=135 Identities=15% Similarity=0.114 Sum_probs=89.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhhhhH--HHHHHHHHHHHHHHHHHHHhh-------hHHHHHHHHHHHhhhhhhhh
Q 012002 31 GLQLFTSSLYLAGLTATFFASYTTRRLGRR--LTMLIAGIFFIAGVAFNVAAQ-------NLAMLIVGRILLGCGVGFAN 101 (473)
Q Consensus 31 ~~~~~~s~~~~~~~~~~~~~g~l~Dr~Grr--~~l~~~~~l~~i~~~~~~~~~-------~~~~l~~~r~l~G~~~~~~~ 101 (473)
--|.+.+.++++..+|+-+..++..|-..| +.+.+...+.++...+..... +...=+++-.+.-.+.|..+
T Consensus 283 PhGfiFatFMlASmLGSSla~Rl~s~s~~~ve~ymqivf~vs~a~l~Lpilt~~vsP~kes~~~s~i~F~~~E~cvGlfw 362 (454)
T KOG4332|consen 283 PHGFIFATFMLASMLGSSLASRLLSRSSPKVESYMQIVFLVSIAALLLPILTSSVSPSKESPSESLIGFCLFEACVGLFW 362 (454)
T ss_pred CchhHHHHHHHHHHHhhHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHhccCCCcCCchHHHHHHHHHHHHHhhcc
Confidence 358999999999999999988888776554 455555554444443333321 22233455556667778899
Q ss_pred hhhhHHHhhcCCCCCchhhHHHHHHHHHHHHHHHHHHhhhccccCCccchHHHHHhhhHHHHHHHHH
Q 012002 102 QAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVG 168 (473)
Q Consensus 102 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~ 168 (473)
|....+-+++.|+++|...+.++..-.++=..++-.. ...-....+-|..|-++.....+..+.
T Consensus 363 PSimkmRsqyIPEearstimNfFRvPLnifvClvLyn---lh~~~~p~~tr~mf~icS~~~~~a~i~ 426 (454)
T KOG4332|consen 363 PSIMKMRSQYIPEEARSTIMNFFRVPLNIFVCLVLYN---LHVDAFPTTTRNMFGICSAFLFVASIL 426 (454)
T ss_pred hHHHHHHHhhCCHHHHhhhhhheechhhHhhhhhhee---cccccCccccchhhhhhHHHHHHHHHH
Confidence 9999999999999999999999876655444443222 111112345678888877776665444
|
|
| >KOG2601 consensus Iron transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.22 E-value=0.57 Score=42.61 Aligned_cols=121 Identities=13% Similarity=-0.041 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHH------Hh------hhHHHHHHHHHHHhhhhhhhh----hhh
Q 012002 41 LAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNV------AA------QNLAMLIVGRILLGCGVGFAN----QAV 104 (473)
Q Consensus 41 ~~~~~~~~~~g~l~Dr~Grr~~l~~~~~l~~i~~~~~~------~~------~~~~~l~~~r~l~G~~~~~~~----~~~ 104 (473)
....+..++.|...|+..|+|++...+.+.=++..+++ +. .+++.+..+-++.-.-.+... .-.
T Consensus 74 gs~lvlg~ivGq~vDg~sr~Kvi~~~L~lqNlSv~vagglvi~~l~~~~~~~~t~pv~t~~lvLa~~i~aI~~Las~A~~ 153 (503)
T KOG2601|consen 74 GSQLVLGPIVGQWVDGMSRVKVIQTWLLLQNLSVIVAGGLVITLLVHKDLKSATSPVFTVCLVLANLIAAIAVLASLAGT 153 (503)
T ss_pred hHHHhhHHHHHHHhcchhHHHHHHHHHhhccHHHHHHHHHHhhheeecchhcccccHHHHHHHHHHHHHHHHHHHHhhhe
Confidence 33456677888999999999998877665433333332 21 255555555544433222211 111
Q ss_pred hHHHhhcC----CCCCchhhH---HHHHHHHHHHHHHHHHHhhhccccCCccchHHHHHhhhHHHHH
Q 012002 105 PLFLSEIA----PTRIRGGLN---ILFQLNVTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAAL 164 (473)
Q Consensus 105 ~~~i~~~~----~~~~r~~~~---~~~~~~~~lG~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~ 164 (473)
...-.||. ..+.+.... +.....-..-..++|.+ .+.+....+-|..-.+.++.+++
T Consensus 154 i~i~RDWvvV~s~g~s~s~lt~mnatir~iDq~tn~Lapv~---tg~Iitfvsl~~~~g~f~~w~~v 217 (503)
T KOG2601|consen 154 ILIERDWVVVMSEGESPSVLTNMNATIRGIDQSTNLLAPVI---TGLIITFVSLRASAGTFAAWALV 217 (503)
T ss_pred EEecccEEEEecCCCCHHHHhhcchhhhhhhhhhhchhhhh---hcccceeechhhhhhhhHHHHHH
Confidence 12223443 223333333 55555555667788888 66666656666655555555544
|
|
| >PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea | Back alignment and domain information |
|---|
Probab=91.39 E-value=1.9 Score=40.69 Aligned_cols=19 Identities=11% Similarity=0.317 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHhhcC
Q 012002 278 GAVNVLSTLVSIYSVDKVG 296 (473)
Q Consensus 278 ~~~~~~~~~~~g~l~d~~~ 296 (473)
.+..++..+..|++..|.+
T Consensus 5 ~i~~i~~ii~~G~~~~~~~ 23 (385)
T PF03547_consen 5 AILPIFLIILLGYLLGRFG 23 (385)
T ss_pred HHHHHHHHHHHHHHHHHhC
Confidence 3444455556666666653
|
Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane |
| >KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.03 E-value=1.5 Score=38.99 Aligned_cols=111 Identities=12% Similarity=0.041 Sum_probs=78.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhh-hhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhhhhhhHHHh
Q 012002 31 GLQLFTSSLYLAGLTATFFASYTTR-RLGRRLTMLIAGIFFIAGVAFNVAAQNLAMLIVGRILLGCGVGFANQAVPLFLS 109 (473)
Q Consensus 31 ~~~~~~s~~~~~~~~~~~~~g~l~D-r~Grr~~l~~~~~l~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~ 109 (473)
|.-|....|.+|..+..--.-..-- ..---.++-.-..++.+...+..+.+++|...+.-+.-|+-.|..++-..--+.
T Consensus 289 qYRwyqvlYQlGVFiSRSS~~~~~~p~l~~LailQ~vNl~ff~~~a~~~ftpsi~ivf~lI~~EGLlGGasYVNTf~~i~ 368 (409)
T KOG3880|consen 289 QYRWYQVLYQLGVFISRSSINLFTMPYLWLLAILQFVNLLFFLLQAWYWFTPSIWIVFALILFEGLLGGASYVNTFHNIH 368 (409)
T ss_pred cchhhheeeeeeEEEEeccceEEechHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcCchHHHHHHHHHh
Confidence 4667777777665433211100000 001112233344556666677778899999999999999998989988888888
Q ss_pred hcCCCCCchhhHHHHHHHHHHHHHHHHHHhhh
Q 012002 110 EIAPTRIRGGLNILFQLNVTIGILFANLVNYG 141 (473)
Q Consensus 110 ~~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~ 141 (473)
+-.++++|..+++....+-++|..++..++..
T Consensus 369 ~e~~pd~rEfamsavs~sDS~Gi~lA~~lalp 400 (409)
T KOG3880|consen 369 KETEPDVREFAMSAVSISDSIGIFLAGLLALP 400 (409)
T ss_pred hcCCchHHHHhHhhheecchhhHHHHHHHhcc
Confidence 88889999999999999999999999988543
|
|
| >KOG2881 consensus Predicted membrane protein [Function unknown] | Back alignment and domain information |
|---|
Probab=88.07 E-value=16 Score=31.43 Aligned_cols=34 Identities=21% Similarity=0.280 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHhhcCcchhHhHHhHHHHHH
Q 012002 278 GAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLS 311 (473)
Q Consensus 278 ~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~ 311 (473)
.++..+..+.+-+++.|+..|++..++.++..+.
T Consensus 250 ~lCT~lAVigGk~lAskIS~rtVt~~ggi~Fi~F 283 (294)
T KOG2881|consen 250 ALCTGLAVIGGKYLASKISVRTVTLIGGILFIIF 283 (294)
T ss_pred HHHHHHHHhhhHHHhhhheeEEEEEecchhHHHH
Confidence 3444444455557788888888877776655444
|
|
| >KOG2601 consensus Iron transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=84.63 E-value=34 Score=31.78 Aligned_cols=67 Identities=12% Similarity=-0.025 Sum_probs=38.4
Q ss_pred HHHHHhHHHHHHH-cCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHhHHhHHHHHHHHHHH
Q 012002 250 NAIMFYAPVLFKT-LGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIA 316 (473)
Q Consensus 250 ~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~ 316 (473)
-...+-...++.. .|-+..-....-.+-+...++...+.|...|+..|+|++.....+.-++.++.+
T Consensus 44 R~W~F~VsL~M~~L~gnsl~lvAvyglvesgs~lvlg~ivGq~vDg~sr~Kvi~~~L~lqNlSv~vag 111 (503)
T KOG2601|consen 44 RMWEFSVSLFMILLGGNSLLLVAVYGLVESGSQLVLGPIVGQWVDGMSRVKVIQTWLLLQNLSVIVAG 111 (503)
T ss_pred hHHHHHHHHHHHHHcCceehhHHHHHHHHHhHHHhhHHHHHHHhcchhHHHHHHHHHhhccHHHHHHH
Confidence 3333444445544 333334444444555555666666777888999999887766665444443333
|
|
| >KOG4830 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=84.38 E-value=0.041 Score=46.87 Aligned_cols=38 Identities=16% Similarity=0.198 Sum_probs=26.8
Q ss_pred cCCCchhHHHHHHHHHHHHHHHHHHHHh---------hhhhhhHHHH
Q 012002 26 KYDNQGLQLFTSSLYLAGLTATFFASYT---------TRRLGRRLTM 63 (473)
Q Consensus 26 ~~s~~~~~~~~s~~~~~~~~~~~~~g~l---------~Dr~Grr~~l 63 (473)
++++.....++-+..+.-++..++.|.. .||+|||+..
T Consensus 48 glsp~~~AmlML~GQVtda~st~ftGi~~d~nll~~~idr~G~~~~w 94 (412)
T KOG4830|consen 48 GLSPSSRAMLMLIGQVTDAISTPFTGIFSDSNLLPACIDRIGRRMSW 94 (412)
T ss_pred cCCcchhHHHHHhhHHHHHHhcccccccccccccHHHhhhhcceeee
Confidence 6777777777777777777777777643 4688887654
|
|
| >COG5336 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=81.39 E-value=8.5 Score=27.88 Aligned_cols=41 Identities=15% Similarity=0.138 Sum_probs=28.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhhhhh-hhHHHHHHHHHHH
Q 012002 30 QGLQLFTSSLYLAGLTATFFASYTTRRL-GRRLTMLIAGIFF 70 (473)
Q Consensus 30 ~~~~~~~s~~~~~~~~~~~~~g~l~Dr~-Grr~~l~~~~~l~ 70 (473)
.+.+.-.++-+++..+.....||+.||| |.+|..++..++.
T Consensus 42 ~~~a~klssefIsGilVGa~iG~llD~~agTsPwglIv~lll 83 (116)
T COG5336 42 YAQAFKLSSEFISGILVGAGIGWLLDKFAGTSPWGLIVFLLL 83 (116)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 3445666777788888888889999997 6666655544443
|
|
| >PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS) | Back alignment and domain information |
|---|
Probab=81.18 E-value=22 Score=31.05 Aligned_cols=105 Identities=13% Similarity=0.138 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhh-hhhHHHHH----HHHHHHHHHHHHHHH-h----hhHHHHHHHHHHHhhhhhhhhh
Q 012002 33 QLFTSSLYLAGLTATFFASYTTRR-LGRRLTML----IAGIFFIAGVAFNVA-A----QNLAMLIVGRILLGCGVGFANQ 102 (473)
Q Consensus 33 ~~~~s~~~~~~~~~~~~~g~l~Dr-~Grr~~l~----~~~~l~~i~~~~~~~-~----~~~~~l~~~r~l~G~~~~~~~~ 102 (473)
....-.+..|+.+|.+..|.+... +.||+.+. .+.+++.++.+.... . .++..+++.-|+.|+..=+..+
T Consensus 144 ~~~~I~fv~g~~~G~~~ig~~nkt~~kRk~fi~~~~~~gi~~~~l~~~~~~~~g~~~~~~~~~f~I~~Fl~G~f~WgiQ~ 223 (267)
T PF07672_consen 144 PIFQILFVAGYFLGPFTIGLWNKTNYKRKPFIHFIISLGIVFFVLSIVVVYFVGPGNAAGFAFFYIFGFLAGFFLWGIQG 223 (267)
T ss_pred HHHHHHHHHHHhhhceeeccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhhhH
Confidence 344455556666666777777764 55666544 334445554444212 1 2466788888888887655555
Q ss_pred hhhHHHhhcCCCCCchhhHHHHHHHHHHHHHHHHHH
Q 012002 103 AVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLV 138 (473)
Q Consensus 103 ~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~ 138 (473)
+...+=-|. +...+.+.--.++..|++|.+.-.+.
T Consensus 224 ViL~lPhEy-K~~~pk~ig~~Fg~iWGfGY~~yTi~ 258 (267)
T PF07672_consen 224 VILNLPHEY-KGYNPKKIGIQFGLIWGFGYIFYTIY 258 (267)
T ss_pred HHhcChhhh-cCCCcceehhHHHHHHHHHHHHHHHH
Confidence 554444443 33334444555566688887766554
|
|
| >COG5336 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=81.14 E-value=3.8 Score=29.62 Aligned_cols=40 Identities=8% Similarity=-0.015 Sum_probs=31.2
Q ss_pred ccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHH
Q 012002 367 LETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHFKFGIFLF 406 (473)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (473)
++.++.+.++-...-.+++.+....+|++.|++-...++.
T Consensus 37 ~s~k~~~~a~klssefIsGilVGa~iG~llD~~agTsPwg 76 (116)
T COG5336 37 ESIKGYAQAFKLSSEFISGILVGAGIGWLLDKFAGTSPWG 76 (116)
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHH
Confidence 4567788888888888999999999999999885443333
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 473 | ||||
| 4gby_A | 491 | The Structure Of The Mfs (Major Facilitator Superfa | 1e-39 |
| >pdb|4GBY|A Chain A, The Structure Of The Mfs (Major Facilitator Superfamily) Proton:xylose Symporter Xyle Bound To D-Xylose Length = 491 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 473 | |||
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 5e-08 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 7e-04 |
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 54.5 bits (130), Expect = 5e-08
Identities = 37/289 (12%), Positives = 80/289 (27%), Gaps = 90/289 (31%)
Query: 165 LTVGSLLVTDTPNSLIERGRFEEGKAVLRKIRGTDKIEPEFLELVEASRIAK----EVKH 220
L + + ++P +++E L+K+ +I+P + + S K ++
Sbjct: 187 LNLKN---CNSPETVLEM---------LQKLL--YQIDPNWTSRSDHSSNIKLRIHSIQA 232
Query: 221 PFRNLLKRRNRPQ-LVI------AVALQIFQ-QCTGINAIMFYAPVLFKTLGFGGSASLY 272
R LLK + L++ A A F C K L
Sbjct: 233 ELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSC--------------KIL--------- 269
Query: 273 STVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKDHSEDLHT 332
+ T V L + + + + ++++ L + +D ++ T
Sbjct: 270 --LTTRFKQVTDFLSAATTTH---ISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLT 324
Query: 333 GFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAF 392
+ +I I +W W + + +N+L + F
Sbjct: 325 TNP-RRLSIIAESIRDGLATWDN--WK------HVNCDKLTTIIESSLNVLEPAEYRKMF 375
Query: 393 LSMLCHFKFGIFLFFSGWVLIMSCFVFFLLPETKNVPIEEMT-ERVWKQ 440
+F P + I + +W
Sbjct: 376 DR------LSVF------------------PP--SAHIPTILLSLIWFD 398
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} Length = 524 | Back alignment and structure |
|---|
Score = 41.2 bits (97), Expect = 7e-04
Identities = 45/334 (13%), Positives = 98/334 (29%), Gaps = 44/334 (13%)
Query: 35 FTSSLYLAGLTATFFA-SYTTRRLGRRLTMLIAGIFFIAGVAF-NVAAQNLAMLIVGRIL 92
F +Y L + A + G+ T+L + + G AF + ++ G L
Sbjct: 63 FVIGVYFFPLLGGWIADRF----FGKYNTILWLSLIYCVGHAFLAIFEHSVQGFYTGLFL 118
Query: 93 LGCGVGF--ANQAVPLFLSEI----APTRIRGGLNILFQLNVTIGILFANLVNYGTSHIK 146
+ G G V F+ + + + ++ F + G FA+L +
Sbjct: 119 IALGSGGIKPL--VSSFMGDQFDQSNKSLAQKAFDM-FYFTINFGSFFASLS---MPLLL 172
Query: 147 SQWGWRISLGLAGIPAALLTVGSLLVTDTPNSLIERGRFEEGKAVLRKIRGTDKIEPEFL 206
+G ++ G+ G+ + + + F G+ + K FL
Sbjct: 173 KNFGAAVAFGIPGVLMFV----ATVF------------FWLGRKRYIHMPPEPKDPHGFL 216
Query: 207 ELVEASRIAKEVKHPFRNLLKRRNRPQLVIAVALQIFQQCTGINAIMFYAPVLFKTLGFG 266
++ ++ + K L+ L + + I + A + +
Sbjct: 217 PVIRSALLTKVEGKGNIGLV-------LALIGGVSAAYALVNIPTLGIVAGLCCAMVLVM 269
Query: 267 GSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGI--QMFLSQTVIAIILGIKVK 324
G +++ ++ V V R ++L Q IL
Sbjct: 270 GFVGAGASLQLERARKSHPDAAVDGVRSVLRILVLFALVTPFWSLFDQKASTWILQANDM 329
Query: 325 DHSEDLHTG-FAVLVVIMICTFISAFAWSWGPLG 357
+ L +++ I + P
Sbjct: 330 VKPQWFEPAMMQALNPLLVMLLIPFNNFVLYPAI 363
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 473 | |||
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 100.0 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 100.0 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 100.0 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 100.0 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 100.0 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.96 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.96 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.47 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.39 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 99.39 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.36 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.36 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.32 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 99.1 |
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-46 Score=365.73 Aligned_cols=401 Identities=28% Similarity=0.466 Sum_probs=320.3
Q ss_pred cCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHH------------------HhhhHHHHH
Q 012002 26 KYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNV------------------AAQNLAMLI 87 (473)
Q Consensus 26 ~~s~~~~~~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~l~~i~~~~~~------------------~~~~~~~l~ 87 (473)
+.++.+.|++.+++.+|..+|++++|+++||+|||++++++.+++.+++++++ +++|+++++
T Consensus 51 ~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~ 130 (491)
T 4gc0_A 51 SAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFV 130 (491)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHH
Confidence 34556789999999999999999999999999999999999999999999999 478999999
Q ss_pred HHHHHHhhhhhhhhhhhhHHHhhcCCCCCchhhHHHHHHHHHHHHHHHHHHhhhccccC-----CccchHHHHHhhhHHH
Q 012002 88 VGRILLGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTSHIK-----SQWGWRISLGLAGIPA 162 (473)
Q Consensus 88 ~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~-----~~~~wr~~f~~~~~~~ 162 (473)
++|+++|+|.|+..+....+++|+.|+++|++..++.+.+..+|.++++.++....... ...+||+.+.+..++.
T Consensus 131 ~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (491)
T 4gc0_A 131 IYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPA 210 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhh
Confidence 99999999999999999999999999999999999999999999999998866544322 2457999999999999
Q ss_pred HHHHHHhhcccCChhhHHhhCChHHHHHHHHHHhCCCCchHHHHHHHHHHhhhhhcccchHHhhcccCchhHHHHHHHHH
Q 012002 163 ALLTVGSLLVTDTPNSLIERGRFEEGKAVLRKIRGTDKIEPEFLELVEASRIAKEVKHPFRNLLKRRNRPQLVIAVALQI 242 (473)
Q Consensus 163 ~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (473)
++..+..+++||+|+|+..+++.+++.+.+++..+++..+++..+.++..+++++.. .... ....++..+......
T Consensus 211 ~~~~~~~~~~peSp~~L~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~ 286 (491)
T 4gc0_A 211 LLFLMLLYTVPESPRWLMSRGKQEQAEGILRKIMGNTLATQAVQEIKHSLDHGRKTG-GRLL---MFGVGVIVIGVMLSI 286 (491)
T ss_dssp HHHHHHGGGSCCCHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-THHH---HSCCTHHHHHHHHHH
T ss_pred hhhhhhhhcCCCChHHHHHcCchhHHHHhHHHhcCCchhHHHHHHHHHHHHhhhhhh-hHHH---HhcccHHHHHHHHHH
Confidence 888888899999999999999999999998887655433333322222222211111 1111 222344466666667
Q ss_pred HhhcchhHHHHHhHHHHHHHcCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHhHHhHHHHHHHHHHHHHHhhh
Q 012002 243 FQQCTGINAIMFYAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIK 322 (473)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (473)
+....+...+..|.|.+.+..+.+...........++..+++.++++++.||+|||+.+..+...+.++.+.+.....
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~-- 364 (491)
T 4gc0_A 287 FQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFY-- 364 (491)
T ss_dssp HHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHh--
Confidence 777778888889999999888888877777888889999999999999999999999999888888877776665442
Q ss_pred hccCCcccchhhHHHHHHHHHHHHHhhhccccccccccccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhh---
Q 012002 323 VKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHF--- 399 (473)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 399 (473)
.....+..+...+++..++..+..++.+.+.+|++|++.|+++.|+.+..+++++.+++.+.+.+.+..
T Consensus 365 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~ 436 (491)
T 4gc0_A 365 --------TQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLV 436 (491)
T ss_dssp --------TTCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHH
T ss_pred --------cccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222334445555556666677777888899999999999999999999999999999998887765432
Q ss_pred ---h-hhHHHHHHHHHHHHHHHHHhhccCCCCCChHHHHHHHhccc
Q 012002 400 ---K-FGIFLFFSGWVLIMSCFVFFLLPETKNVPIEEMTERVWKQH 441 (473)
Q Consensus 400 ---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (473)
+ ...++++++++++..++.++++||||++++||+ |+.++++
T Consensus 437 ~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~tLeei-~~~f~~~ 481 (491)
T 4gc0_A 437 AHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEEL-EALWEPE 481 (491)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCCHHHH-GGGTC--
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHheecCCCCCCHHHH-HHHhCCC
Confidence 1 224566677777778888899999999999998 6666544
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-39 Score=308.41 Aligned_cols=374 Identities=14% Similarity=0.069 Sum_probs=276.5
Q ss_pred ccccCCCCCcccCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHH----hhhHHHHHHHH
Q 012002 15 RTQQGDDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVA----AQNLAMLIVGR 90 (473)
Q Consensus 15 ~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~l~~i~~~~~~~----~~~~~~l~~~r 90 (473)
....|.+.+++ ++..+.|++.+++.+++.++++++|+++||+|||++++++.++.+++.+++++ +++++.++++|
T Consensus 48 ~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 126 (451)
T 1pw4_A 48 ALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLL 126 (451)
T ss_dssp HHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHH
T ss_pred HHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHH
Confidence 34456788888 99999999999999999999999999999999999999999999999999999 99999999999
Q ss_pred HHHhhhhhhhhhhhhHHHhhcCCCCCchhhHHHHHHHHHHHHHHHHHHhhhccccCCccc-hHHHHHhhhHHHHHHHHH-
Q 012002 91 ILLGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTSHIKSQWG-WRISLGLAGIPAALLTVG- 168 (473)
Q Consensus 91 ~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~-wr~~f~~~~~~~~~~~~~- 168 (473)
+++|++.+...+...+++.|++|+++|++++++.+.+.++|.+++|.++.. +.+..+ ||+.|++.+++.++..++
T Consensus 127 ~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~---l~~~~g~w~~~f~~~~~~~~~~~~~~ 203 (451)
T 1pw4_A 127 FLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLL---GMAWFNDWHAALYMPAFCAILVALFA 203 (451)
T ss_dssp HHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHH---HHHHTCCSTTCTHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHH---HHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999543 334567 999999999888776655
Q ss_pred hhcccCChhhHHhhCChHHHHHHHHHHhCCCCchHHHHHHHHHHhhhhhcccc--hHHhhcccCchhHHHHHHHHHHhhc
Q 012002 169 SLLVTDTPNSLIERGRFEEGKAVLRKIRGTDKIEPEFLELVEASRIAKEVKHP--FRNLLKRRNRPQLVIAVALQIFQQC 246 (473)
Q Consensus 169 ~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (473)
.+++||+|+....+++.++. ...+.+ . ++.++++....+ .++.++++. ++...+..++..
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~----------~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 265 (451)
T 1pw4_A 204 FAMMRDTPQSCGLPPIEEYK----------NDYPDD---Y-NEKAEQELTAKQIFMQYVLPNKL----LWYIAIANVFVY 265 (451)
T ss_dssp HHHCCCSSTTTCCCSCTTTC----------CC-----------------CCTHHHHHHTSSCHH----HHHHHHHHHHHH
T ss_pred HhhccCCHhhcCCCChhhhc----------cccccc---c-hhhhhcccccccchHHHHHcCHH----HHHHHHHHHHHH
Confidence 46688887543221111100 000000 0 000000111111 233343333 666666666666
Q ss_pred chhHHHHHhHHHHHHH-cCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhc--CcchhHhHHhHHHH-HHHHHHHHHHhhh
Q 012002 247 TGINAIMFYAPVLFKT-LGFGGSASLYSTVITGAVNVLSTLVSIYSVDKV--GRRMLLLEAGIQMF-LSQTVIAIILGIK 322 (473)
Q Consensus 247 ~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 322 (473)
.....+..+.|.++++ +|++..+.+...+...++.+++.++.+++.||+ +||+.+..+..+.. ++.+++...
T Consensus 266 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 341 (451)
T 1pw4_A 266 LLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMN---- 341 (451)
T ss_dssp HHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSC----
T ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHh----
Confidence 7777888899998887 899999999999999999999999999999999 99888776655544 333222210
Q ss_pred hccCCcccchhhHHHHHHHHHHHHHhhhccccccccccccccccccchhhhHHHHHHHHHH-HHHHHHHHHHHHhhhhhh
Q 012002 323 VKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLL-FTFVIAQAFLSMLCHFKF 401 (473)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 401 (473)
+....+.......+.+ .......+....+..|.+|++.|+++.|+.+....+ +..++|.+.|.+.+..++
T Consensus 342 --------~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~ 412 (451)
T 1pw4_A 342 --------PAGNPTVDMICMIVIG-FLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGW 412 (451)
T ss_dssp --------CTTCHHHHHHHHHHHH-HHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCS
T ss_pred --------cccCHHHHHHHHHHHH-HHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 1112222222222222 222233344567778999999999999999999999 999999999999998887
Q ss_pred hHHHHHHHHHHHHHHHHHhhcc
Q 012002 402 GIFLFFSGWVLIMSCFVFFLLP 423 (473)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~ 423 (473)
...+.+.+++.+++.+..++.+
T Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~ 434 (451)
T 1pw4_A 413 DGGFMVMIGGSILAVILLIVVM 434 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 7666666655555555554443
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-36 Score=288.95 Aligned_cols=354 Identities=12% Similarity=0.063 Sum_probs=267.8
Q ss_pred hccccCCCCCcccCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHH---HHhhhHHHHHHHH
Q 012002 14 RRTQQGDDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFN---VAAQNLAMLIVGR 90 (473)
Q Consensus 14 ~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~l~~i~~~~~---~~~~~~~~l~~~r 90 (473)
.....|.+.+++|++..+.|++.+.+.+++.++++++|+++||+|||++++++.++.+++.+++ +++++++.++++|
T Consensus 45 ~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 124 (438)
T 3o7q_A 45 NDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGL 124 (438)
T ss_dssp HHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHH
Confidence 3444566788899999999999999999999999999999999999999999999999999999 8889999999999
Q ss_pred HHHhhhhhhhhhhhhHHHhhcCCCCCchhhHHHHHHHHHHHHHHHHHHhhhccccCCccc--------------------
Q 012002 91 ILLGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTSHIKSQWG-------------------- 150 (473)
Q Consensus 91 ~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~-------------------- 150 (473)
+++|++.+...+...+++.|++|+++|++++++.+.+.++|.++++.++..... +..+
T Consensus 125 ~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~ 202 (438)
T 3o7q_A 125 FIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLIL--SNVPHQSQDVLDKMSPEQLSAYKH 202 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHH--TSSCCCCHHHHHHSCHHHHHHHHH
T ss_pred HHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cccccccccccccCCcchhhhhhh
Confidence 999999999999999999999999999999999999999999999999554430 2222
Q ss_pred -----hHHHHHhhhHHHHHHHHHhhc--ccCChhhHHhhCChHHHHHHHHHHhCCCCchHHHHHHHHHHhhhhhcccchH
Q 012002 151 -----WRISLGLAGIPAALLTVGSLL--VTDTPNSLIERGRFEEGKAVLRKIRGTDKIEPEFLELVEASRIAKEVKHPFR 223 (473)
Q Consensus 151 -----wr~~f~~~~~~~~~~~~~~~~--~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (473)
||+.|++.+++.++..++.++ .||+++. ++++ +++++.+.+++
T Consensus 203 ~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~---~~~~---------------------------~~~~~~~~~~~ 252 (438)
T 3o7q_A 203 SLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSD---NHSD---------------------------AKQGSFSASLS 252 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTT---CCCC---------------------------SSTTSHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHcCCccccc---cccc---------------------------ccccchhhhHH
Confidence 999998888777666555433 4554321 0000 00111123455
Q ss_pred HhhcccCchhHHHHHHHHHHhhcchhHHHHHhHHHH-HHH-cCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCcchhH
Q 012002 224 NLLKRRNRPQLVIAVALQIFQQCTGINAIMFYAPVL-FKT-LGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLL 301 (473)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~ 301 (473)
+++|++. ++...+..++..........+.|.+ +++ +|++..+++.......++.+++.++.+++.||++||+.+
T Consensus 253 ~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~ 328 (438)
T 3o7q_A 253 RLARIRH----WRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVL 328 (438)
T ss_dssp HHTTCSH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred HHHhChH----HHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 6666655 4455555555556667777888888 777 599999999999999999999999999999999999999
Q ss_pred hHHhHHHHHHHHHHHHHHhhhhccCCcccchhhHHHHHHHHHHHHHhhhccccccccccccccccccchhhhHHHHHHHH
Q 012002 302 LEAGIQMFLSQTVIAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVN 381 (473)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 381 (473)
..+.+...++.++.... +. . +. .....+.. .+.....+..+.+..|.+|++ ++.+.++.. .+
T Consensus 329 ~~~~~~~~~~~~~~~~~------------~~-~-~~-~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~ 390 (438)
T 3o7q_A 329 AAYALIAMALCLISAFA------------GG-H-VG-LIALTLCS-AFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MT 390 (438)
T ss_dssp HHHHHHHHHHHHHHHHC------------CH-H-HH-HHHHHHHH-HHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HT
T ss_pred HHHHHHHHHHHHHHHHc------------CC-c-HH-HHHHHHHH-HHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HH
Confidence 88877766665544432 11 1 11 12222222 223333456677777888876 888888777 67
Q ss_pred HHHHHHHHHHHHHHhhhhh-hhHHHHHHHHHHHHHHHHHhh
Q 012002 382 LLFTFVIAQAFLSMLCHFK-FGIFLFFSGWVLIMSCFVFFL 421 (473)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 421 (473)
.+++.++|.+.|.+.+..+ +...+.+.+++.+...+..+.
T Consensus 391 ~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 431 (438)
T 3o7q_A 391 IIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFIFARF 431 (438)
T ss_dssp THHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence 7999999999999999988 766666555554444443333
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-33 Score=272.02 Aligned_cols=391 Identities=13% Similarity=0.061 Sum_probs=250.3
Q ss_pred CCcccCCCchhHHHHHHHHHHHHHHHHHHHHhhhh-hhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhh
Q 012002 22 SNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRR-LGRRLTMLIAGIFFIAGVAFNVAAQNLAMLIVGRILLGCGVGFA 100 (473)
Q Consensus 22 ~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~Dr-~Grr~~l~~~~~l~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~ 100 (473)
++|+|++..+.+++.+.+.++..++++++|+++|| +|||+++..+.++.+++.+++++++|++.++++|+++|++.+..
T Consensus 46 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~ 125 (491)
T 4aps_A 46 TGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFL 125 (491)
T ss_dssp HTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHH
T ss_pred hhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhc
Confidence 44589999999999999999999999999999999 89999999999999999999999999999999999999999999
Q ss_pred hhhhhHHHhhcCCCCC--chhhHHHHHHHHHHHHHHHHHHhhhccccCCccchHHHHHhhhHHHHHHHHHhhcc-cCChh
Q 012002 101 NQAVPLFLSEIAPTRI--RGGLNILFQLNVTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVGSLLV-TDTPN 177 (473)
Q Consensus 101 ~~~~~~~i~~~~~~~~--r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~-~e~p~ 177 (473)
.+...++++|++|+++ |+.++++++.+.++|..++|.++ +.+.++.|||+.|++.++..++..++.++. ++..+
T Consensus 126 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~---~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 202 (491)
T 4aps_A 126 KPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIV---GAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLD 202 (491)
T ss_dssp HHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred cchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHH---HHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCccccc
Confidence 9999999999999988 77788889999999999999994 445556789999999877776665554332 22110
Q ss_pred ----hHHhhCChHHHHHHHHH----------------HhCCCCchHHHHHHHHH---------HhhhhhcccchHHhhcc
Q 012002 178 ----SLIERGRFEEGKAVLRK----------------IRGTDKIEPEFLELVEA---------SRIAKEVKHPFRNLLKR 228 (473)
Q Consensus 178 ----~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~ 228 (473)
....+.+.++.++..+. ..+..+.+......... ....++...+.. .+.
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 280 (491)
T 4aps_A 203 PHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIVAIAIPVFYFAWMISSVKVTST--EHL 280 (491)
T ss_dssp SCCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHHHC-------------
T ss_pred ccccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhhHHHHHHHHHHHHHHhhcccccHH--HHH
Confidence 00111122222222221 11111111110000000 000000000000 111
Q ss_pred cCchhHHHHHHHHHHhhcchhHHHHHhHHHHHHH-cCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHh-----
Q 012002 229 RNRPQLVIAVALQIFQQCTGINAIMFYAPVLFKT-LGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLL----- 302 (473)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~----- 302 (473)
+. .. .+...+..+.....+.....+.|.+.++ .+.+....+.......+..+++.++.+++.||++||+...
T Consensus 281 ~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~ 358 (491)
T 4aps_A 281 RV-VS-YIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFA 358 (491)
T ss_dssp -C-TT-HHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHH
T ss_pred HH-HH-HHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHH
Confidence 11 11 2222222333333334444556666655 6777677888888899999999999999999999987655
Q ss_pred HHhHHHHHHHHHHHHHHhhhhccCCcccchhhHHHHHHHHHHHHHhhhccccccccccccccccccchhhhHHHHHHHHH
Q 012002 303 EAGIQMFLSQTVIAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNL 382 (473)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 382 (473)
.+..+..++..++....... ... .....+.......+ .+.......+..+.+..|.+|++.|+++.|+.+....
T Consensus 359 ~~~~~~~~~~~~~~~~~~~~--~~~---~~~~~~~~~~~~~l-~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~ 432 (491)
T 4aps_A 359 VGLMFAGLSFLLMAIPGALY--GTS---GKVSPLWLVGSWAL-VILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSS 432 (491)
T ss_dssp HHHHHHHHHHTTTHHHHHHC--CCC---TTCCTHHHHHHHHH-HHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhc--CCC---CCccHHHHHHHHHH-HHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 44444444444443322110 000 11122222222222 2233333345667788999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhccCC
Q 012002 383 LFTFVIAQAFLSMLCHFKFGIFLFFSGWVLIMSCFVFFLLPET 425 (473)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (473)
+|..+++.+.+.+.+......+...+++..+.+++.++..++.
T Consensus 433 ~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (491)
T 4aps_A 433 VGSALNAQLVTLYNAKSEVAYFSYFGLGSVVLGIVLVFLSKRI 475 (491)
T ss_dssp HHHHHHHHHGGGGGGSSTTHHHHHTHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999988776544455555555555555555544443
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-35 Score=274.84 Aligned_cols=343 Identities=14% Similarity=0.126 Sum_probs=259.0
Q ss_pred cccCCCCCcccCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhh
Q 012002 16 TQQGDDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVAAQNLAMLIVGRILLGC 95 (473)
Q Consensus 16 ~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~l~~i~~~~~~~~~~~~~l~~~r~l~G~ 95 (473)
+..|.+.+++|.++.+.+++.+.+.+++.++++++|+++||+|||+++..+..+.+++.++++++++++.+++.|+++|+
T Consensus 21 ~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~ 100 (375)
T 2gfp_A 21 PAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSLTVLIAASAMQGM 100 (375)
T ss_dssp HHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 34456778899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhhHHHhhcCCCCCchhhHHHHHHHHHHHHHHHHHHhhhccccCCccchHHHHHhhhHHHHHHHHH-hhcccC
Q 012002 96 GVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVG-SLLVTD 174 (473)
Q Consensus 96 ~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~-~~~~~e 174 (473)
+.+...+...+++.|++|+++|++++++.+.+..+|..++|.+ .+.+.+..+||+.|++.+++.++..+. .+++||
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (375)
T 2gfp_A 101 GTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLI---GGLLDTMWNWRACYLFLLVLCAGVTFSMARWMPE 177 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHH---HHHSSCHHHHHHHHHHHHHHHHHHHCCCCCSSCC
T ss_pred HHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHH---HHHHHHhccHHHHHHHHHHHHHHHHHHHHHHCcc
Confidence 9999999999999999999999999999999999999999999 455556679999999998888777764 556787
Q ss_pred ChhhHHhhCChHHHHHHHHHHhCCCCchHHHHHHHHHHhhhhhcccchHHhhcccCchhHHHHHHHHHHhhcchhHHHHH
Q 012002 175 TPNSLIERGRFEEGKAVLRKIRGTDKIEPEFLELVEASRIAKEVKHPFRNLLKRRNRPQLVIAVALQIFQQCTGINAIMF 254 (473)
Q Consensus 175 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (473)
+++... + +++.+.++++.+|++. ++...+..++..........
T Consensus 178 ~~~~~~---~------------------------------~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~ 220 (375)
T 2gfp_A 178 TRPVDA---P------------------------------RTRLLTSYKTLFGNSG----FNCYLLMLIGGLAGIAAFEA 220 (375)
T ss_dssp CSTTTC---C------------------------------CCCTTTCSTHHHHHHH----HHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCc---c------------------------------cccHHHHHHHHhcCcc----hHHHHHHHHHHHHHHHHHHH
Confidence 653210 0 0112334555665554 44455555555556667777
Q ss_pred hHHHHHHH-cCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHhHHhHH-HHHHHHHHHHHHhhhhccCCcccch
Q 012002 255 YAPVLFKT-LGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQ-MFLSQTVIAIILGIKVKDHSEDLHT 332 (473)
Q Consensus 255 ~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (473)
+.|.+.++ +|.++.+.+.......++.+++.++.+++.||++++ +..+... ...+......... ..
T Consensus 221 ~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~--~~~~~~~~~~~~~~~~~~~~~----------~~ 288 (375)
T 2gfp_A 221 CSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTL--MWQSVICCLLAGLLMWIPDWF----------GV 288 (375)
T ss_dssp HCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHH--HHHHHHHHHHTSSSSSHHHHH----------HH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhh----------cc
Confidence 88877766 888888999999999999999999999999998872 2222222 1111111111100 11
Q ss_pred hhHHHHHHHHHHHHHhhhccccccccccccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHH
Q 012002 333 GFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHFKFGIFLFFSGWVL 412 (473)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (473)
...+.......+...+. ....+....+..|..| +.|+++.|+.+....++..+++.+.+.+.+..++...+.+.++..
T Consensus 289 ~~~~~~~~~~~l~g~~~-~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~~ 366 (375)
T 2gfp_A 289 MNVWTLLVPAALFFFGA-GMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQTGQGSLGLLMTLMGL 366 (375)
T ss_dssp HHHHHHHHHHHHHHHHH-HHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHH-HHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHH
Confidence 12222222223333222 2334566777889988 889999999999999999999999999988777666665544433
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.96 E-value=8.4e-29 Score=242.42 Aligned_cols=142 Identities=18% Similarity=0.264 Sum_probs=129.1
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHhhhhh-hhHHHHHHHHHHHHHHHHHHHHhh-hHHHHHHHHHHHhhhhhhhhhhh
Q 012002 27 YDNQGLQLFTSSLYLAGLTATFFASYTTRRL-GRRLTMLIAGIFFIAGVAFNVAAQ-NLAMLIVGRILLGCGVGFANQAV 104 (473)
Q Consensus 27 ~s~~~~~~~~s~~~~~~~~~~~~~g~l~Dr~-Grr~~l~~~~~l~~i~~~~~~~~~-~~~~l~~~r~l~G~~~~~~~~~~ 104 (473)
++..+.+++.+.+.++..++.+++|+++||+ |||+++.++.++.+++.+++++++ +++.++++|++.|++.+...+..
T Consensus 51 ~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~ 130 (524)
T 2xut_A 51 LRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLV 130 (524)
T ss_dssp TTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhH
Confidence 9999999999999999999999999999999 999999999999999999999999 99999999999999999999999
Q ss_pred hHHHhhcCCCCCchhhHHH---HHHHHHHHHHHHHHHhhhccccCCccchHHHHHhhhHHHHHHHHHhhc
Q 012002 105 PLFLSEIAPTRIRGGLNIL---FQLNVTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVGSLL 171 (473)
Q Consensus 105 ~~~i~~~~~~~~r~~~~~~---~~~~~~lG~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~ 171 (473)
.+++.|++|+++|+++.+. .+.+.++|.+++|.+ .+.+.+..+||+.|++.+++.++..+..++
T Consensus 131 ~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~---~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~ 197 (524)
T 2xut_A 131 SSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLS---MPLLLKNFGAAVAFGIPGVLMFVATVFFWL 197 (524)
T ss_dssp HHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHT---STHHHHTSCHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhccccHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999876666 899999999999999 555555678999999988887766655443
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=6.4e-30 Score=242.35 Aligned_cols=359 Identities=13% Similarity=0.048 Sum_probs=220.1
Q ss_pred CCCcccCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHH---HHHHhhhH-HHHHHHHHHHhhh
Q 012002 21 DSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVA---FNVAAQNL-AMLIVGRILLGCG 96 (473)
Q Consensus 21 ~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~l~~i~~~---~~~~~~~~-~~l~~~r~l~G~~ 96 (473)
+++++|+|..+.|++.+.+.+++.++++++|+++||+|||++++++..+++++.. .+.+++.. ..++..+++.|++
T Consensus 34 l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (417)
T 2cfq_A 34 LHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIY 113 (417)
T ss_dssp HHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHHTTCCHHHHGGGSS
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5567899999999999999999999999999999999999999998887765322 12233222 1244567777776
Q ss_pred hhhhhhhhhHHHhhcCCC--CCchhhHHHHHHHHHHHHHHHHHHhhhccccCCccchHHHHHhhhHHHHHHHHHhhcccC
Q 012002 97 VGFANQAVPLFLSEIAPT--RIRGGLNILFQLNVTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVGSLLVTD 174 (473)
Q Consensus 97 ~~~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e 174 (473)
.+...+.....+.++.++ ++|+...+......++|..++|.++.... + .+||+.|++.++..++..+..++.+|
T Consensus 114 ~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~---~-~~~~~~f~~~~~~~~~~~~~~~~~~~ 189 (417)
T 2cfq_A 114 LGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMF---T-INNQFVFWLGSGCALILAVLLFFAKT 189 (417)
T ss_dssp TTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHH---H-HCSHHHHTTTTTTTTTHHHHSCSSCC
T ss_pred HHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHH---H-hchhHHHHHHHHHHHHHHHHHHHcCc
Confidence 666555555555555433 34566777777777888888888854433 2 47999999888776555555555444
Q ss_pred ChhhHHhhCChHHHHHHHHHHhCCCCchHHHHHHHHHHhhhhhcccchHHhhcccCchhHHHHHHHHHHhhcchhHHHHH
Q 012002 175 TPNSLIERGRFEEGKAVLRKIRGTDKIEPEFLELVEASRIAKEVKHPFRNLLKRRNRPQLVIAVALQIFQQCTGINAIMF 254 (473)
Q Consensus 175 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (473)
+|+. +.+.++ ..+. ++++....+++++++++. ++...+..+.....+..+..
T Consensus 190 ~~~~---~~~~~~----------~~~~-----------~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~ 241 (417)
T 2cfq_A 190 DAPS---SATVAN----------AVGA-----------NHSAFSLKLALELFRQPK----LWFLSLYVIGVSCTYDVFDQ 241 (417)
T ss_dssp CCSC---SSCSSS----------SSSS-----------CCCCCCHHHHHHHTTCHH----HHHHHHHHHHHHHHHHHHHH
T ss_pred cccc---cccccc----------cccc-----------ccccccHHHHHHHhcCCc----hhhHHHHHHHHHHHHHHHHH
Confidence 3311 000000 0000 000000112344555443 32333332322333444445
Q ss_pred hHHHHHHH-cC---CCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHhHHhHHHHHHHHHHHHHHhhhhccCCccc
Q 012002 255 YAPVLFKT-LG---FGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKDHSEDL 330 (473)
Q Consensus 255 ~~~~~~~~-~g---~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (473)
+.|.++.+ ++ .+....+.......++.+++.++.++++||++||+.+..+....++....+...
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~------------ 309 (417)
T 2cfq_A 242 QFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFA------------ 309 (417)
T ss_dssp HHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTC------------
T ss_pred HHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHh------------
Confidence 56766654 33 223445667777778888999999999999999998887666655544333211
Q ss_pred chhhHHHHHHHHHHHHHhhhccccccccccccccccccchhhhHHHH-HHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHH
Q 012002 331 HTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVT-VCVNLLFTFVIAQAFLSMLCHFKFGIFLFFSG 409 (473)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (473)
+ ..+..+....+...... ...+..+.+.+|.+|++.|+++.++. +....+|+.++|.+.|.+.+..++...+.+.+
T Consensus 310 ~--~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~ 386 (417)
T 2cfq_A 310 T--SALEVVILKTLHMFEVP-FLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLG 386 (417)
T ss_dssp C--SHHHHHHHTTHHHHHHH-HHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHH
T ss_pred c--cHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHH
Confidence 1 11112111111111111 11123356788999999999999994 78888999999999999998877666555555
Q ss_pred HHHHHHHHH-HhhccCCC
Q 012002 410 WVLIMSCFV-FFLLPETK 426 (473)
Q Consensus 410 ~~~~~~~~~-~~~~~~~~ 426 (473)
+..+++.+. ++..++++
T Consensus 387 ~~~l~~~~~~~~~~~~~~ 404 (417)
T 2cfq_A 387 LVALGFTLISVFTLSGPG 404 (417)
T ss_dssp HHHHHHHHHHTTSSCCSC
T ss_pred HHHHHHHHHHHhhhcCCC
Confidence 554444444 44444433
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=5.8e-13 Score=126.86 Aligned_cols=153 Identities=7% Similarity=-0.087 Sum_probs=116.4
Q ss_pred HHHHHHHHHhhcchhHHHHHhHHHHHHHcCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHhHHhHHHHHHHHH
Q 012002 235 VIAVALQIFQQCTGINAIMFYAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTV 314 (473)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~ 314 (473)
++...+..+.............|.+.+++|.+..+.+++.+...++..++.++.|+++||+|||+.+..+.++..++.++
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~ 107 (438)
T 3o7q_A 28 FALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAAL 107 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 44555555555555667777888888899999999999999999999999999999999999999999998888888777
Q ss_pred HHHHHhhhhccCCcccchhhHHHHHHHHHHHHHhhhccccccccccccccccccchhhhHHHHHHHHHHHHHHHHHHHHH
Q 012002 315 IAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLS 394 (473)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (473)
...... . ...+..++...+ .+.......+....++.|.+|+++|+.+.++.+....+|..+++.+.+.
T Consensus 108 ~~~~~~----------~-~~~~~l~~~~~l-~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~ 175 (438)
T 3o7q_A 108 FWPAAE----------I-MNYTLFLVGLFI-IAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQS 175 (438)
T ss_dssp HHHHHH----------T-TCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTH
T ss_pred HHhccc----------c-ccHHHHHHHHHH-HHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 643211 1 112222222222 2222333334557788999999999999999999999999999999998
Q ss_pred Hh-hhh
Q 012002 395 ML-CHF 399 (473)
Q Consensus 395 ~~-~~~ 399 (473)
+. +..
T Consensus 176 l~~~~~ 181 (438)
T 3o7q_A 176 LILSNV 181 (438)
T ss_dssp HHHTSS
T ss_pred HHhccc
Confidence 88 443
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.39 E-value=1.6e-12 Score=124.33 Aligned_cols=149 Identities=13% Similarity=0.102 Sum_probs=128.5
Q ss_pred CCCcccCCCchhHHHHHHHHHHHHHHHHHHHHhhhhh--hhHHHHHHHHHHHH-HHHHHHHHh--hhHHHHHHHHHHHhh
Q 012002 21 DSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRRL--GRRLTMLIAGIFFI-AGVAFNVAA--QNLAMLIVGRILLGC 95 (473)
Q Consensus 21 ~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~Dr~--Grr~~l~~~~~l~~-i~~~~~~~~--~~~~~l~~~r~l~G~ 95 (473)
+++.+|++..+.+++.+...++..++.++.|++.||+ |||+.+..+..+.. ++.++..+. .+.+.+.+..++.|+
T Consensus 279 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 358 (451)
T 1pw4_A 279 LKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGF 358 (451)
T ss_dssp BTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHH
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHH
Confidence 4455799999999999999999999999999999999 99999988887776 666666665 367788888999999
Q ss_pred hhhhhhhhhhHHHhhcCCCCCchhhHHHHHHHHHH-HHHHHHHHhhhccccCCccchHHHHHhhhHHHHHHHHHhhcc
Q 012002 96 GVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVTI-GILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVGSLLV 172 (473)
Q Consensus 96 ~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~l-G~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~ 172 (473)
+.+...+....++.|.+|+++|++++++.+....+ |..++|.+ .+.+.+..||+..|++.++..++..++.+++
T Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~---~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 433 (451)
T 1pw4_A 359 LIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAI---VGYTVDFFGWDGGFMVMIGGSILAVILLIVV 433 (451)
T ss_dssp HHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHSSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHH---HHHHHHhcCcHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999 99999999 5555566789999999888887777665544
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.39 E-value=2.3e-12 Score=120.03 Aligned_cols=173 Identities=13% Similarity=0.021 Sum_probs=127.2
Q ss_pred HHHHHHhhcchhHHHHHhHHHHHHHcCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHhHHhHHHHHHHHHHHH
Q 012002 238 VALQIFQQCTGINAIMFYAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAI 317 (473)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~ 317 (473)
..+..+.............|.+.+++|.+..+.+...+...++..++.++.|+++||+|||+.+..+.....++......
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~ 84 (375)
T 2gfp_A 5 LVLLVAVGQMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVT 84 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHH
Confidence 34444445555566667778888889999999999999999999999999999999999999999988888887777665
Q ss_pred HHhhhhccCCcccchhhHHHHHHHHHHHHHhhhccccccccccccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 012002 318 ILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLC 397 (473)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (473)
.. +.+... ...+..+.......+....+..|.+|+++|+++.++.+....+|..++|.+.+.+.+
T Consensus 85 ~~--------------~~~~l~-~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~ 149 (375)
T 2gfp_A 85 TS--------------SLTVLI-AASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDT 149 (375)
T ss_dssp HH--------------HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred hc--------------cHHHHH-HHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 31 122222 222222333333345666778899999999999999999999999999999999988
Q ss_pred hhhhhHHHHHHHHHHHHHHH-HHhhccCC
Q 012002 398 HFKFGIFLFFSGWVLIMSCF-VFFLLPET 425 (473)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 425 (473)
..++...+.+.++..+...+ ..+..||+
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (375)
T 2gfp_A 150 MWNWRACYLFLLVLCAGVTFSMARWMPET 178 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCCCSSCCC
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHCccc
Confidence 87777666555544444433 44455554
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=7e-13 Score=125.26 Aligned_cols=148 Identities=15% Similarity=0.204 Sum_probs=123.3
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhhhhhhH
Q 012002 27 YDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVAAQNLAMLIVGRILLGCGVGFANQAVPL 106 (473)
Q Consensus 27 ~s~~~~~~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~l~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~ 106 (473)
.+....+++.+...++..++.++.|+++||+|||+++..+..+.+++.++.++.++.+.+++..++.+++.+...+....
T Consensus 256 ~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 335 (417)
T 2cfq_A 256 QGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFK 335 (417)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566788888888999999999999999999999999999888888878877888888888888889888777788889
Q ss_pred HHhhcCCCCCchhhHHH-HHHHHHHHHHHHHHHhhhccccCCccchHHHHHhhhHHHHHHHHHh-hcccCChh
Q 012002 107 FLSEIAPTRIRGGLNIL-FQLNVTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVGS-LLVTDTPN 177 (473)
Q Consensus 107 ~i~~~~~~~~r~~~~~~-~~~~~~lG~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~-~~~~e~p~ 177 (473)
++.|.+|++.|+++.++ ++....+|.+++|.+ .+.+.++.|++..|.+.+++.++..++. .+.+|.++
T Consensus 336 ~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l---~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~~ 405 (417)
T 2cfq_A 336 YITSQFEVRFSATIYLVCFCFFKQLAMIFMSVL---AGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGP 405 (417)
T ss_dssp HHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHH---HHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCSCT
T ss_pred HHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhh---HHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCCCc
Confidence 99999999999999998 478888999999999 4555556788999998888877776664 44666543
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.36 E-value=2.2e-12 Score=124.78 Aligned_cols=171 Identities=14% Similarity=0.105 Sum_probs=123.2
Q ss_pred HHHHHHHHHhhcchhHHHHHhHHHHHH-H-----cCCCCcchHHHHHHHHHHHHHHHHHHHHHHhh-cCcchhHhHHhHH
Q 012002 235 VIAVALQIFQQCTGINAIMFYAPVLFK-T-----LGFGGSASLYSTVITGAVNVLSTLVSIYSVDK-VGRRMLLLEAGIQ 307 (473)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-----~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~~~~~~~~~~~~~ 307 (473)
++......++....++.+..+.+.+++ . +|.+..+.++..+...++..++.++.|+++|| +|||+.+..+.++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~ 94 (491)
T 4aps_A 15 LSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVL 94 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHH
Confidence 455555555566666667666666664 4 89999999999999999999999999999999 8999999988888
Q ss_pred HHHHHHHHHHHHhhhhccCCcccchhhHHHHHHHHHHHHHhhhccccccccccccccccccc--hhhhHHHHHHHHHHHH
Q 012002 308 MFLSQTVIAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLET--RSAGQSVTVCVNLLFT 385 (473)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~--~~~~~~~~~~~~~~~~ 385 (473)
..++.++.... + . .+.......+ .+.......+....++.|.+|++. |+.+.++.+....+|.
T Consensus 95 ~~~~~~~~~~~------------~-~-~~~~~~~~~l-~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~ 159 (491)
T 4aps_A 95 IMLGHIVLALP------------F-G-ASALFGSIIL-IIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGA 159 (491)
T ss_dssp HHHHHHHHHSC------------C-S-TTHHHHHHHH-HHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh------------h-h-HHHHHHHHHH-HHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHH
Confidence 77777665432 1 1 1112222222 222222233566777889999988 7788888899999999
Q ss_pred HHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHh
Q 012002 386 FVIAQAFLSMLCHFKFGIFLFFSGWVLIMSCFVFF 420 (473)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (473)
.++|.+.+.+.+..++...+...++..+.+.+..+
T Consensus 160 ~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~ 194 (491)
T 4aps_A 160 FIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYY 194 (491)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999888877766665555554444443
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.32 E-value=2.8e-11 Score=118.03 Aligned_cols=171 Identities=12% Similarity=0.057 Sum_probs=121.3
Q ss_pred HHHHHHHhhcchhHHHHHhHHHHHH-HcC------CCCcchHHHHHHHHHHHHHHHHHHHHHHhhc-CcchhHhHHhHHH
Q 012002 237 AVALQIFQQCTGINAIMFYAPVLFK-TLG------FGGSASLYSTVITGAVNVLSTLVSIYSVDKV-GRRMLLLEAGIQM 308 (473)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~g------~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~~~~ 308 (473)
...+..++....++....+.+.++. ++| ++..+.+.+.+...++..++.++.|+++||+ |||+.+..+.++.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~ 95 (524)
T 2xut_A 16 YIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIY 95 (524)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 3444444555556666677776664 588 9999999999999999999999999999999 9999999888777
Q ss_pred HHHHHHHHHHHhhhhccCCcccchhhHHHHHHHHHHHHHhhhccccccccccccccccccchhhhHHH---HHHHHHHHH
Q 012002 309 FLSQTVIAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSV---TVCVNLLFT 385 (473)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~---~~~~~~~~~ 385 (473)
.++.++.... + ...+...... +..+.......+...+++.|.+|++.|+++.+. .+....+|.
T Consensus 96 ~~~~~~~~~~------------~-~~~~~~~~~~-~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~ 161 (524)
T 2xut_A 96 CVGHAFLAIF------------E-HSVQGFYTGL-FLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGS 161 (524)
T ss_dssp HHHHHHHHHT------------S-SCHHHHHHHH-HHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh------------c-ccHHHHHHHH-HHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHH
Confidence 7776665542 1 0122222222 222333333445667788999999999776666 888899999
Q ss_pred HHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhh
Q 012002 386 FVIAQAFLSMLCHFKFGIFLFFSGWVLIMSCFVFFL 421 (473)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (473)
.++|.+.+.+.+..++...+.+.++..+.+.+..++
T Consensus 162 ~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~ 197 (524)
T 2xut_A 162 FFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWL 197 (524)
T ss_dssp HHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999988777776666655555554444433
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=4.8e-10 Score=108.31 Aligned_cols=153 Identities=18% Similarity=0.089 Sum_probs=108.4
Q ss_pred CcccCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhh-----hHHHHHH-HHHHHhhh
Q 012002 23 NYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVAAQ-----NLAMLIV-GRILLGCG 96 (473)
Q Consensus 23 ~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~l~~i~~~~~~~~~-----~~~~l~~-~r~l~G~~ 96 (473)
+..+.+............+...++.++++++.||+|||+.++.+....+++.+..+... +...+.. .-+..+.+
T Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (491)
T 4gc0_A 305 KTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFA 384 (491)
T ss_dssp HHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHH
Confidence 34455666677777788888999999999999999999999999888888777665432 1122222 22222222
Q ss_pred hhhhhhhhhHHHhhcCCCCCchhhHHHHHHHHHHHHHHHHHHhhhccc---cCCccchHHHHHhhhHHHHHHHHH-hhcc
Q 012002 97 VGFANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTSH---IKSQWGWRISLGLAGIPAALLTVG-SLLV 172 (473)
Q Consensus 97 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~---~~~~~~wr~~f~~~~~~~~~~~~~-~~~~ 172 (473)
. ...+....+.+|.+|.+.|++++++......+|.++++.+...... .....++.+.|++.++++++..+. ++++
T Consensus 385 ~-~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~ 463 (491)
T 4gc0_A 385 M-SWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFV 463 (491)
T ss_dssp T-TTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHC
T ss_pred h-HHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhee
Confidence 2 3456778899999999999999999999988998888766322211 111245666788888888777766 5678
Q ss_pred cCCh
Q 012002 173 TDTP 176 (473)
Q Consensus 173 ~e~p 176 (473)
||+.
T Consensus 464 PETk 467 (491)
T 4gc0_A 464 PETK 467 (491)
T ss_dssp CCCT
T ss_pred cCCC
Confidence 9975
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 473 | ||||
| d1pw4a_ | 447 | f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es | 5e-14 | |
| d1pv7a_ | 417 | f.38.1.2 (A:) Lactose permease {Escherichia coli [ | 0.002 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Score = 71.6 bits (174), Expect = 5e-14
Identities = 56/402 (13%), Positives = 114/402 (28%), Gaps = 34/402 (8%)
Query: 32 LQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAF----NVAAQNLAMLI 87
L S + +A + F + R R+ + I A + F A ++A++
Sbjct: 61 LGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMF 120
Query: 88 VGRILLGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTSHIKS 147
V L G G + + RGG+ ++ +G L+ +
Sbjct: 121 VLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFN 180
Query: 148 QWGWRISLGLAGIPAALLTVGSLLVTDTPNSLIERGRFEEGKAVLRKIRGTDKIEPEFLE 207
W + + L F + + E +
Sbjct: 181 DWHAALYMPAFCAILVALFA-----------------FAMMRDTPQSCGLPPIEEYKNDY 223
Query: 208 LVEASRIAKEVKHPFRNLLKRRNRPQLVIAVALQIFQQCTGINAIMFYAPVLFK-TLGFG 266
+ + A++ + ++ +L+ +A+ I+ ++P K F
Sbjct: 224 PDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFA 283
Query: 267 GSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKDH 326
S ++ + + TL+ + DKV R M L +
Sbjct: 284 LDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYW------- 336
Query: 327 SEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTF 386
++ V ++ I + L L E P + T L
Sbjct: 337 ---MNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGS 393
Query: 387 VIAQAFLSMLCHF--KFGIFLFFSGWVLIMSCFVFFLLPETK 426
V A A + F G F+ G ++ + ++ K
Sbjct: 394 VAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEK 435
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Length = 417 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Score = 38.2 bits (87), Expect = 0.002
Identities = 44/405 (10%), Positives = 96/405 (23%), Gaps = 47/405 (11%)
Query: 34 LFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNV----AAQNLAMLIVG 89
+ +++ L L + +LG R +L + A ++VG
Sbjct: 47 IIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVG 106
Query: 90 RILLGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTSHIKSQW 149
I+ G +GF A + R + + + +A + +
Sbjct: 107 SIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMF-TIN 165
Query: 150 GWRISLGLAGIPAALLTVGSLLVTDTPNSLIERGRFEEGKAVLRKIRGTDKIEPEFLELV 209
+ +G L + TD P+S +
Sbjct: 166 NQFVFWLGSGCALILAVLLFFAKTDAPSSATVANAVGANHSAFSL--------------- 210
Query: 210 EASRIAKEVKHPFRNLLKRRNRPQLVIAVALQIFQQCTGINAIMFYAPVLFKTLGFGGSA 269
L ++ L + V + F T G
Sbjct: 211 ----------KLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRV 260
Query: 270 SLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKDHSED 329
Y T + +N + ++ + ++A + S
Sbjct: 261 FGYVTTMGELLNASIMFFAPLIIN------------RIGGKNALLLAGTIMSVRIIGSSF 308
Query: 330 LHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIA 389
+ V+++ + F F + + F + + V C +
Sbjct: 309 ATSALEVVILKTLHMFEVPFLL---VGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFM 365
Query: 390 QAFLSMLCHFK--FGIFLFFSGWVLIMSCFVFFLLPETKNVPIEE 432
+ G +L L + F L + +
Sbjct: 366 SVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGPLSLLR 410
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 473 | |||
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 100.0 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.95 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.43 | |
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.42 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2e-37 Score=295.22 Aligned_cols=375 Identities=15% Similarity=0.057 Sum_probs=259.4
Q ss_pred cccCCCCCcccCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhh----hHHHHHHHHH
Q 012002 16 TQQGDDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVAAQ----NLAMLIVGRI 91 (473)
Q Consensus 16 ~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~l~~i~~~~~~~~~----~~~~l~~~r~ 91 (473)
...|.++| +|+|.+|+|++.+++.+++.++++++|+++||+|||+++.++.++.+++.+++++++ +++.+++.|+
T Consensus 46 ~~~p~~~~-~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (447)
T d1pw4a_ 46 LAMPYLVE-QGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLF 124 (447)
T ss_dssp HHHHHTTS-STTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHH
T ss_pred HHHHHHHH-hCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHH
Confidence 34456664 799999999999999999999999999999999999999999999999999998764 7789999999
Q ss_pred HHhhhhhhhhhhhhHHHhhcCCCCCchhhHHHHHHHHHHHHHHHHHHhhhccccCCccchHHHHHhhhHHHHHHHHHh-h
Q 012002 92 LLGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVGS-L 170 (473)
Q Consensus 92 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~-~ 170 (473)
+.|++.|...+....++.|++|+++|++++++.+.+..+|.++++.++..... ...+||+.|++.+++.++..++. +
T Consensus 125 ~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~--~~~~w~~~~~~~~~~~~~~~~~~~~ 202 (447)
T d1pw4a_ 125 LCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMA--WFNDWHAALYMPAFCAILVALFAFA 202 (447)
T ss_dssp HHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHH--HTCCSTTCTHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhh--hhhcccccchhhhhhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999987543322 12479999999888887776664 4
Q ss_pred cccCChhhHHhhCChHHHHHHHHHHhCCCCchHHHHHHHHHHhhhhhcccchHHhhcccCchhHHHHHHHHHHhhcchhH
Q 012002 171 LVTDTPNSLIERGRFEEGKAVLRKIRGTDKIEPEFLELVEASRIAKEVKHPFRNLLKRRNRPQLVIAVALQIFQQCTGIN 250 (473)
Q Consensus 171 ~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (473)
+.+|+|+........+.. ++..++ ..++.+++....+...+..+++ +.++......++.....+
T Consensus 203 ~~~~~~~~~~~~~~~~~~----------~~~~~~--~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 266 (447)
T d1pw4a_ 203 MMRDTPQSCGLPPIEEYK----------NDYPDD--YNEKAEQELTAKQIFMQYVLPN----KLLWYIAIANVFVYLLRY 266 (447)
T ss_dssp HCCCSSTTTCCCSCTTTC----------CC---------------CCTHHHHHHTSSC----HHHHHHHHHHHHHHHHHH
T ss_pred hcccchhhcccchhhhhh----------hhcccc--hhhccccccchhhHHHHHHHcC----chHHHHHHHhhhhhhhhh
Confidence 466655432211111100 000000 0000000001111122223333 335666666666666677
Q ss_pred HHHHhHHHHHHH-cCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHhHHhHHHHHHHHHHHHHHhhhhccCCcc
Q 012002 251 AIMFYAPVLFKT-LGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKDHSED 329 (473)
Q Consensus 251 ~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (473)
....+.|.++.+ .+++..+.+.......+..+++.++.+++.||++|++..........+.......... .
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~---- 338 (447)
T d1pw4a_ 267 GILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWM----N---- 338 (447)
T ss_dssp HHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTS----C----
T ss_pred cchhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhccccccccccchhHHHHHHHHHHHHh----c----
Confidence 778888887765 8899999999999999999999999999999999876555443333332222222110 0
Q ss_pred cchhhHHHHHHHHHHHHHhhhccccccccccccccccccchhhhHHHHHHHHHHH-HHHHHHHHHHHhhhhhhhHHHHHH
Q 012002 330 LHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLF-TFVIAQAFLSMLCHFKFGIFLFFS 408 (473)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 408 (473)
.....+......+. .++......+....+..|.+|++.|+++.|+.+...+++ ..++|.+.|.+.+..++...+.+.
T Consensus 339 -~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~ 416 (447)
T d1pw4a_ 339 -PAGNPTVDMICMIV-IGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVM 416 (447)
T ss_dssp -CTTCHHHHHHHHHH-HHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHH
T ss_pred -ccccHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHH
Confidence 11122222222222 222233333455677789999999999999999988875 456788899999998876655554
Q ss_pred HHHHHHHHHHH
Q 012002 409 GWVLIMSCFVF 419 (473)
Q Consensus 409 ~~~~~~~~~~~ 419 (473)
..+.+.+.++.
T Consensus 417 ~~~~~~~~~~~ 427 (447)
T d1pw4a_ 417 IGGSILAVILL 427 (447)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 44444444333
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.95 E-value=5.3e-29 Score=233.63 Aligned_cols=363 Identities=14% Similarity=0.013 Sum_probs=226.0
Q ss_pred CCCcccCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHH----HHHHHHHhhh
Q 012002 21 DSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVAAQNLAML----IVGRILLGCG 96 (473)
Q Consensus 21 ~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~l~~i~~~~~~~~~~~~~l----~~~r~l~G~~ 96 (473)
+++++|+|++++|++.+++.+++.++++++|+++||+||||+++++..+..++..+..+..+.... ++.+.+.+.+
T Consensus 34 l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (417)
T d1pv7a_ 34 LHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIY 113 (417)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHHHHHHHTHHHHHHHTHHHHHHTTCHHHHHHTTTT
T ss_pred HHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhc
Confidence 566789999999999999999999999999999999999999999999999999888887665543 4556666666
Q ss_pred hhhhhhhhhHHHhhcCCC--CCchhhHHHHHHHHHHHHHHHHHHhhhccccCCccchHHHHHhhhHHHHHHHHH-hhccc
Q 012002 97 VGFANQAVPLFLSEIAPT--RIRGGLNILFQLNVTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVG-SLLVT 173 (473)
Q Consensus 97 ~~~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~-~~~~~ 173 (473)
.+...........+..++ +++.+..+........+..+++.++..... .+|+..+........+..++ .+..+
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (417)
T d1pv7a_ 114 LGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT----INNQFVFWLGSGCALILAVLLFFAKT 189 (417)
T ss_dssp GGGGGTTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHH----HCHHHHHHHHHHHHHHHHHHHHSSCC
T ss_pred ccccccchhhcccccccchhhhhHHHHHHHhhhhcccccccccccccccc----ccccccccchhhHHHHHHHHHHHHhc
Confidence 655555555544444332 234566777778888888888888544433 45666666655555544444 55566
Q ss_pred CChhhHHhhCChHHHHHHHHHHhCCCCchHHHHHHHHHHhhhhhcccchHHhhcccCchhHHHHHHHHHHhhcchhHHHH
Q 012002 174 DTPNSLIERGRFEEGKAVLRKIRGTDKIEPEFLELVEASRIAKEVKHPFRNLLKRRNRPQLVIAVALQIFQQCTGINAIM 253 (473)
Q Consensus 174 e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (473)
|+|+... +.++ ++.++++.......+.++.+..+............ .....
T Consensus 190 ~~~~~~~---~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ 240 (417)
T d1pv7a_ 190 DAPSSAT---VANA----------------------VGANHSAFSLKLALELFRQPKLWFLSLYVIGVSCT----YDVFD 240 (417)
T ss_dssp CSCSSSC---SSHH----------------------HHSCCCCCCHHHHHHHTTSSHHHHHHHHHHHHHHH----HHHHH
T ss_pred ccccchh---hhhh----------------------hhhhcccccccccccccccccccchhhhhHHHHHH----HHhhh
Confidence 6553210 0000 00000011111122222233222222222222221 12222
Q ss_pred HhHHHHHHH----cCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHhHHhHHHHHHHHHHHHHHhhhhccCCcc
Q 012002 254 FYAPVLFKT----LGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKDHSED 329 (473)
Q Consensus 254 ~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (473)
...+.+... .+.+....+.......++..++..+.+++.||.++|+.+..+.....++.+.+...
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~----------- 309 (417)
T d1pv7a_ 241 QQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFA----------- 309 (417)
T ss_dssp HHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTC-----------
T ss_pred ccccccccccccccccchhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccccc-----------
Confidence 222222222 22334455667777888889999999999999999999988877777766655432
Q ss_pred cchhhHHHHHHHHHHHHHhhhccccccccccccccccccchhhhHHHHH-HHHHHHHHHHHHHHHHHhhhhhhhHHHHH-
Q 012002 330 LHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTV-CVNLLFTFVIAQAFLSMLCHFKFGIFLFF- 407 (473)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 407 (473)
+ +.+.......+...+.. ...+....+..|.+|++.|+++.|+.. ....+|..++|.+.|.+.|..++...+.+
T Consensus 310 -~--~~~~~~~~~~l~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~~ 385 (417)
T d1pv7a_ 310 -T--SALEVVILKTLHMFEVP-FLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVL 385 (417)
T ss_dssp -C--CHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred -c--ccchhhHHHHHHHHHHH-HHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH
Confidence 1 12222222222222222 233455677889999999999999865 55678999999999999999887655544
Q ss_pred HHHHHHHHHHHHhhccCCCCCChH
Q 012002 408 SGWVLIMSCFVFFLLPETKNVPIE 431 (473)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~ 431 (473)
+++..+..++..+.++++++.+.+
T Consensus 386 ~~~~~~~~~~~~~~l~~~~~~~~~ 409 (417)
T d1pv7a_ 386 GLVALGFTLISVFTLSGPGPLSLL 409 (417)
T ss_dssp HHHHHHHHHHHHHHSCCSSCTTHH
T ss_pred HHHHHHHHHHHHHhhcCCCccchh
Confidence 444444555556666655555543
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.43 E-value=1.1e-13 Score=128.06 Aligned_cols=149 Identities=14% Similarity=0.168 Sum_probs=132.4
Q ss_pred CCCCcccCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhh
Q 012002 20 DDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVAAQNLAMLIVGRILLGCGVGF 99 (473)
Q Consensus 20 ~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~l~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~ 99 (473)
...++.+.+....+...+...++..++.++.+++.||+|+|+.+.++..+.+++.++..+.++.+.+++..++.|++.+.
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~ 328 (417)
T d1pv7a_ 249 SFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPF 328 (417)
T ss_dssp TSSSCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHH
T ss_pred ccccccccchhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHH
Confidence 44455566778888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhHHHhhcCCCCCchhhHHHH-HHHHHHHHHHHHHHhhhccccCCccchHHHHHhhhHHHHHHHHHhhc
Q 012002 100 ANQAVPLFLSEIAPTRIRGGLNILF-QLNVTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVGSLL 171 (473)
Q Consensus 100 ~~~~~~~~i~~~~~~~~r~~~~~~~-~~~~~lG~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~ 171 (473)
..+...+++.|.+|+++|+++.++. +....+|..++|.+ .+.+.++.||+..|++.+++.++..++..+
T Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~---~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 398 (417)
T d1pv7a_ 329 LLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVL---AGNMYESIGFQGAYLVLGLVALGFTLISVF 398 (417)
T ss_dssp HHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHH---HHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999975 56778999999999 566667789999999998888777766444
|
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.42 E-value=1.5e-13 Score=128.98 Aligned_cols=162 Identities=14% Similarity=0.091 Sum_probs=113.1
Q ss_pred HHHhHHHHHHHcCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHhHHhHHHHHHHHHHHHHHhhhhccCCcccc
Q 012002 252 IMFYAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKDHSEDLH 331 (473)
Q Consensus 252 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (473)
+....|.+ ++.|++..+.+++.+...++..++.++.|+++||+|||+.+..+.++..++.++.+.....
T Consensus 44 ~~~~~p~~-~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~---------- 112 (447)
T d1pw4a_ 44 FALAMPYL-VEQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWA---------- 112 (447)
T ss_dssp HHHHHHHT-TSSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHH----------
T ss_pred HHHHHHHH-HHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhhccccchh----------
Confidence 44445544 5689999999999999999999999999999999999999999988888877776654211
Q ss_pred hhhHHHHHHHHHHHHHhhhccccccccccccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhh-hhhH-HHHHHH
Q 012002 332 TGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHF-KFGI-FLFFSG 409 (473)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~ 409 (473)
....+..++...+ .+.......+....++.|.+|+++|+++.++.+....+|..+++.+.+...+.. ++.. ++....
T Consensus 113 ~~~~~~~~~~~~~-~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~w~~~~~~~~~ 191 (447)
T d1pw4a_ 113 TSSIAVMFVLLFL-CGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAF 191 (447)
T ss_dssp HSSSSHHHHHHHH-HHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHH
T ss_pred hhhHHHHHHHHHH-HHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhhhhhcccccchhhhh
Confidence 1111122222222 222222233455667789999999999999999999999999998888776654 3333 344444
Q ss_pred HHHHHHHHHHhhccCC
Q 012002 410 WVLIMSCFVFFLLPET 425 (473)
Q Consensus 410 ~~~~~~~~~~~~~~~~ 425 (473)
+..+..++.+.+.+++
T Consensus 192 ~~~~~~~~~~~~~~~~ 207 (447)
T d1pw4a_ 192 CAILVALFAFAMMRDT 207 (447)
T ss_dssp HHHHHHHHHHHHCCCS
T ss_pred hHHHHHHHHHHhcccc
Confidence 4445555555555544
|