Citrus Sinensis ID: 012078

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-
MNEKANVSKELNARHRKILEGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAFIQSMGNEKANSYWEAELPPNYDRVGIENFIRAKYEEKRWVSRDGQANSPPRGLEEKASIHWQRPGEKSGHGYTDNSENLSEERKHVQAPSTKDSVPAARISLPLPPRGPDQVVAITKPQQTESTVAPAGATNQSSDANLAVPPPKVDFASDLFDMLSGDSPNENSSEAASADDNLWAGFQSAVETSTAEKKDSTKAVESSPQSATGIEDLFKDSPSLATPSSSEKPQKDLKNDIMSLFEKSNMVSPFAMHQQQLTMLAQQQSLLMAAAAKSGGDPKFSSSFQLPVSNGTNLPSNFGNQIPGIMMPGAGTADLQKLMQAMSIAPAQQVGAGPADLQKLMQAMSMVPTHQVAAGPADIQKLMQAMSMAPTHQGGNSVPFPTSRYSNILLF
cccccHHcHHHHHHHHHHHHHHHccccccccccccccccccEEccccEEEEccccccccccccccccEEEcccccccHHHHHHHHHHcHHHHHHHHHHcccccccHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccccccccccccHHHHHHHHccccccccccccHHHHHHHHHHcccccccccccccccccccccccccc
ccccccccHHHHHHHHHHHHHHHHcccccEccccccEcccEEEccccEEEcHHHHHHHHHHccccccEEEcccccccHHHHHHHHHccHHHHHHHHccccccccccHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcccccccccccccccccccHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccHHccccccccccccccccccccccHHHHccccccccccccHHHHHHHccccccccccccccccccccccccEEEcc
MNEKANVSKELNARHRKILEGLlklpenrecadckakgprwasvNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAFIQSMGNekansyweaelppnydrvgIENFIRAKYEekrwvsrdgqanspprgleekasihwqrpgeksghgytdnsenlseerkhvqapstkdsvpaarislplpprgpdqvvaitkpqqtestvapagatnqssdanlavpppkvdfasdlfdmlsgdspnensseaasaddnLWAGFQSAVetstaekkdstkavesspqsatgiedlfkdspslatpsssekpqkdlKNDIMSLFEksnmvspfamHQQQLTMLAQQQSLLMAAAAksggdpkfsssfqlpvsngtnlpsnfgnqipgimmpgagtADLQKLMQAMSiapaqqvgagpADLQKLMQAMSmvpthqvaagpADIQKLMQAMsmapthqggnsvpfptsrysnillf
mnekanvskelnaRHRKILegllklpenreCADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAFIQSMGNEKANSYWEAelppnydrVGIENFIRAKyeekrwvsrdgqanspprgleekasihwqrpgeksghgYTDNSENLSEERKHvqapstkdsvpaarislplpprgpDQVVAITKPQQTESTVapagatnqssdanlavPPPKVDFASDLFDMLSGDSPNENSSEAASADDNLWAGFQSAVEtstaekkdstkavesspqsatgiedLFKDSPSlatpsssekpqkdLKNDIMSLFEKSNMVSPFAMHQQQLTMLAQQQSLLMAAAAKSGGDPKFSSSFQLPVSNGTNLPSNFGNQIPGIMMPGAGTADLQKLMQAMSIAPAQQVGAGPADLQKLMQAMSMVPTHQVAAGPADIQKLMQAMSMAPthqggnsvpfptsrysnillf
MNEKANVSKELNARHRKILEGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAFIQSMGNEKANSYWEAELPPNYDRVGIENFIRAKYEEKRWVSRDGQANSPPRGLEEKASIHWQRPGEKSGHGYTDNSENLSEERKHVQAPSTKDSVPAARISLPLPPRGPDQVVAITKPQQTESTVAPAGATNQSSDANLAVPPPKVDFASDLFDMLSGDSPnensseaasaddnLWAGFQSAVETSTAEKKDSTKAVESSPQSATGIEDLFKDSPSLATPSSSEKPQKDLKNDIMSLFEKSNMVSPFamhqqqltmlaqqqsllmaaaaKSGGDPKFSSSFQLPVSNGTNLPSNFGNQIPGIMMPGAGTADLQKLMQAMSIAPAQQVGAGPADLQKLMQAMSMVPTHQVAAGPADIQKLMQAMSMAPTHQGGNSVPFPTSRYSNILLF
*****************ILEGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAFIQSMGNEKANSYWEAELPPNYDRVGIENFIRAKYEEKRWV************************************************************************************************************************************************************************************************************************************************************************************************************************************************************
*********************LLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAFIQSMGNEKANSYWEAELPPNYDRVGIENFIRAKYEEKRWVSR*****************************************************************************************************************************************************************************************************************************************************************************************************************************************************NILLF
*********ELNARHRKILEGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAFIQSMGNEKANSYWEAELPPNYDRVGIENFIRAKYEEKRW*******************************************************VPAARISLPLPPRGPDQVVAITKPQQTESTVAPAGATNQSSDANLAVPPPKVDFASDLFDMLSG************ADDNLWAGFQSA*********************ATGIEDLFKDSP************KDLKNDIMSLFEKSNMVSPFAMHQQQLTMLAQQQSLLM***********FSSSFQLPVSNGTNLPSNFGNQIPGIMMPGAGTADLQKLMQAMSIAPAQQVGAGPADLQKLMQAMSMVPTHQVAAGPADIQKLMQAMSMAPTHQGGNSVPFPTSRYSNILLF
********KELNARHRKILEGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAFIQSMGNEKANSYWEAELPPNYDRVGIENFIRAKYEEKRWVSR******************************************************************************************************************************************************************************************DLKNDIMSLFEKSNMVSPFAMHQQQLTMLAQQQSLLMAAAAKSGGDPKFSSSFQLPVSNGTNLPSNFGNQIPGIMMPGAGTADLQKLMQAMSIAPAQQVGAGPADLQKLMQAMSMVPTHQVAAGPADIQKLMQAMSMAP*HQGGNSVPFPTSRYSNILLF
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MNEKANVSKELNARHRKILEGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAFIQSMGNEKANSYWEAELPPNYDRVGIENFIRAKYEEKRWVSRDGQANSPPRGLEEKASIHWQRPGEKSGHGYTDNSENLSEERKHVQAPSTKDSVPAARISLPLPPRGPDQVVAITKPQQTESTVAPAGATNQSSDANLAVPPPKVDFASDLFDMLSGDSPNENSSEAASADDNLWAGFQSAVETSTAEKKDSTKAVESSPQSATGIEDLFKDSPSLATPSSSEKPQKDLKNDIMSLFEKSNMVSPFAMHQQQLTMLAQQQSLLMAAAAKSGGDPKFSSSFQLPVSNGTNLPSNFGNQIPGIMMPGAGTADLQKLMQAMSIAPAQQVGAGPADLQKLMQAMSMVPTHQVAAGPADIQKLMQAMSMAPTHQGGNSVPFPTSRYSNILLF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query471 2.2.26 [Sep-21-2011]
Q9FL69483 Probable ADP-ribosylation yes no 0.823 0.803 0.636 1e-133
Q0WQQ1232 Probable ADP-ribosylation no no 0.263 0.534 0.758 1e-54
Q5F413428 Stromal membrane-associat yes no 0.250 0.275 0.524 2e-34
Q7TN29428 Stromal membrane-associat yes no 0.280 0.308 0.464 2e-33
Q8WU79429 Stromal membrane-associat yes no 0.280 0.307 0.457 3e-33
Q5EA00429 Stromal membrane-associat yes no 0.280 0.307 0.457 4e-33
Q91VZ6440 Stromal membrane-associat no no 0.227 0.243 0.540 2e-32
Q8IYB5467 Stromal membrane-associat no no 0.227 0.229 0.531 1e-31
Q9UT34320 Uncharacterized protein C yes no 0.237 0.35 0.525 3e-30
P40529298 ADP-ribosylation factor G yes no 0.229 0.362 0.525 1e-28
>sp|Q9FL69|AGD5_ARATH Probable ADP-ribosylation factor GTPase-activating protein AGD5 OS=Arabidopsis thaliana GN=AGD5 PE=1 SV=1 Back     alignment and function desciption
 Score =  475 bits (1223), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 261/410 (63%), Positives = 302/410 (73%), Gaps = 22/410 (5%)

Query: 1   MNEKANVSKELNARHRKILEGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRS 60
           MNEKANVSKELNARHRKILEGLLK PENRECADCK KGPRWASVNLGIFICMQCSGIHRS
Sbjct: 1   MNEKANVSKELNARHRKILEGLLKHPENRECADCKTKGPRWASVNLGIFICMQCSGIHRS 60

Query: 61  LGVHISKVRSATLDTWLPEQVAFIQSMGNEKANSYWEAELPPNYDRVGIENFIRAKYEEK 120
           LGVHISKVRSATLDTWLPEQVAFIQSMGN+KANSYWEAELPPNYDRVGIENFIRAKYEEK
Sbjct: 61  LGVHISKVRSATLDTWLPEQVAFIQSMGNDKANSYWEAELPPNYDRVGIENFIRAKYEEK 120

Query: 121 RWVSRDGQANSPPRGLEEKASIHWQRPGEKSGHGYTDNSENLSEERKHVQAPSTKDSVPA 180
           RWVSR  +A SPPR +E++     +R G    HG++ +  NL EERK + A  T+++V A
Sbjct: 121 RWVSRGEKARSPPR-VEQERRKSVERSGPGYEHGHSSSPVNLFEERKTIPASRTRNNVAA 179

Query: 181 ARISLPLPPRGPDQVVAITKPQQT-ESTVAPAGATNQSSDANLAVPPPKVDFASDLFDML 239
            RI+LP+PP+GP QV+   KPQQ  ES   P     Q+ +   A  PPKVDFA+DLF+ML
Sbjct: 180 TRINLPVPPQGPSQVI---KPQQKMESAATPVEREKQAVNVAPASDPPKVDFATDLFNML 236

Query: 240 SGDSPNENSSEA----ASADDNLWAGFQSAVETSTAEKKDSTK--AVESSPQSATGIEDL 293
           S D    N+SEA      ADDN WAGFQSA    TAEK  + K     S P S++  EDL
Sbjct: 237 SMDDSTTNTSEATPGDTPADDNSWAGFQSAGSGQTAEKIVTAKPAESSSPPASSSDFEDL 296

Query: 294 FKDSPSLATPSSSEKPQKDLKNDIMSLFEKSNMVSPFAMHQQQLTMLAQQQSLLMAAAAK 353
           FKD+P+L T    ++  KD+K DIMSLFEK+N+VSPFAMHQQQ+ MLAQQQ+L MAAA  
Sbjct: 297 FKDTPNLTT----QQAPKDVKGDIMSLFEKTNIVSPFAMHQQQVAMLAQQQALYMAAAKA 352

Query: 354 SGGDPKFSSSFQLPVSNGTNLPS-NFGN----QIPGIMMPGAGTADLQKL 398
           +GG P   +  Q  ++N  N+ S N+ N    QIPG+  P  G ADLQKL
Sbjct: 353 AGGTPNGVN--QQAIANALNVASANWSNPGGYQIPGMTNPVGGQADLQKL 400
GTPase-activating protein (GAP) for ADP ribosylation factor (ARF).
Arabidopsis thaliana (taxid: 3702)
>sp|Q0WQQ1|AGD15_ARATH Probable ADP-ribosylation factor GTPase-activating protein AGD15 OS=Arabidopsis thaliana GN=AGD15 PE=2 SV=1 Back     alignment and function description
>sp|Q5F413|SMAP2_CHICK Stromal membrane-associated protein 2 OS=Gallus gallus GN=SMAP2 PE=2 SV=1 Back     alignment and function description
>sp|Q7TN29|SMAP2_MOUSE Stromal membrane-associated protein 2 OS=Mus musculus GN=Smap2 PE=1 SV=1 Back     alignment and function description
>sp|Q8WU79|SMAP2_HUMAN Stromal membrane-associated protein 2 OS=Homo sapiens GN=SMAP2 PE=1 SV=1 Back     alignment and function description
>sp|Q5EA00|SMAP2_BOVIN Stromal membrane-associated protein 2 OS=Bos taurus GN=SMAP2 PE=2 SV=1 Back     alignment and function description
>sp|Q91VZ6|SMAP1_MOUSE Stromal membrane-associated protein 1 OS=Mus musculus GN=Smap1 PE=1 SV=1 Back     alignment and function description
>sp|Q8IYB5|SMAP1_HUMAN Stromal membrane-associated protein 1 OS=Homo sapiens GN=SMAP1 PE=1 SV=2 Back     alignment and function description
>sp|Q9UT34|YIQ9_SCHPO Uncharacterized protein C824.09c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC824.09c PE=4 SV=1 Back     alignment and function description
>sp|P40529|AGE2_YEAST ADP-ribosylation factor GTPase-activating protein effector protein 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=AGE2 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query471
359493891478 PREDICTED: probable ADP-ribosylation fac 0.917 0.903 0.695 1e-164
225461326475 PREDICTED: probable ADP-ribosylation fac 0.917 0.909 0.693 1e-162
224115066492 predicted protein [Populus trichocarpa] 0.845 0.808 0.726 1e-155
224123040478 predicted protein [Populus trichocarpa] 0.889 0.876 0.617 1e-155
359806292500 uncharacterized protein LOC100807561 [Gl 0.940 0.886 0.625 1e-148
255580436482 Stromal membrane-associated protein, put 0.845 0.825 0.706 1e-148
356543996484 PREDICTED: probable ADP-ribosylation fac 0.857 0.834 0.655 1e-145
449464762510 PREDICTED: probable ADP-ribosylation fac 0.968 0.894 0.584 1e-144
356549775481 PREDICTED: probable ADP-ribosylation fac 0.857 0.839 0.666 1e-143
297796307478 ARF-GAP domain 5 [Arabidopsis lyrata sub 0.821 0.809 0.650 1e-136
>gi|359493891|ref|XP_003634688.1| PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD5-like isoform 2 [Vitis vinifera] gi|302143074|emb|CBI20369.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  585 bits (1508), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 308/443 (69%), Positives = 350/443 (79%), Gaps = 11/443 (2%)

Query: 1   MNEKANVSKELNARHRKILEGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRS 60
           MNEKANV+KELNARHRKILEGLLKLPENRECADCK+KGPRWASVNLGIFICMQCSGIHRS
Sbjct: 1   MNEKANVTKELNARHRKILEGLLKLPENRECADCKSKGPRWASVNLGIFICMQCSGIHRS 60

Query: 61  LGVHISKVRSATLDTWLPEQVAFIQSMGNEKANSYWEAELPPNYDRVGIENFIRAKYEEK 120
           LGVHISKVRSATLDTWLPEQVAFIQSMGNEKANSYWEAELPPNYDRVGIENFIRAKYE+K
Sbjct: 61  LGVHISKVRSATLDTWLPEQVAFIQSMGNEKANSYWEAELPPNYDRVGIENFIRAKYEDK 120

Query: 121 RWVSRDGQANSPPRGLEEKASIHWQRPGEKSGHGYTDNSENLSEERKHVQAPSTKDSVPA 180
           RW+ +DG+  S  +G EEKAS HW RPG++ G G T NSEN  EE+K+VQAPS KD+ PA
Sbjct: 121 RWIPKDGKPRSTSQGREEKASAHWHRPGDRGGSGNTSNSENSFEEKKNVQAPSIKDNGPA 180

Query: 181 ARISLPLPPRGPDQVVAITKPQQT----ESTVAPAGATNQSSDANLAVPPPKVDFASDLF 236
            RISLP+PP+GP+ V  I KP Q     E +V  A +  Q++D+   VPPPKVD+A+DLF
Sbjct: 181 TRISLPVPPKGPEPVAPIPKPHQVTQKPEPSVPQAESAKQAADSTPVVPPPKVDYATDLF 240

Query: 237 DMLSGDSPNENSSEAASADDNLWAGFQSAVETSTAEKKDSTKAVESSPQSATGIEDLFKD 296
           +MLS D P EN SEAASADDN WAGFQSA +TSTAEK    K +E + QS +GIEDLFKD
Sbjct: 241 NMLSMDDPTENGSEAASADDNAWAGFQSAEQTSTAEKTAPAKPIEGNTQSTSGIEDLFKD 300

Query: 297 SPSLATPSSSEKPQKDLKNDIMSLFEKSNMVSPFAMHQQQLTMLAQQQSLLMAAAAKSGG 356
           SPS+  P++S+KPQKD+KNDIMSLFEKSNMVSPF++HQQQL MLAQQQSLLMAAAAKS G
Sbjct: 301 SPSI-MPAASDKPQKDVKNDIMSLFEKSNMVSPFSLHQQQLAMLAQQQSLLMAAAAKSTG 359

Query: 357 -DPKFSSSFQLPVSNGTNLPS----NFGNQIPGIMMPGAGTADLQKLMQAMSIAPAQQVG 411
             PKFS + Q   SNGT+LP+    N G QIPG+MM  AG  D+QK MQA ++ P    G
Sbjct: 360 VAPKFSINAQQHSSNGTDLPTQNWPNMGYQIPGMMMQAAGNNDMQKFMQAANMGPTHPAG 419

Query: 412 AGPADLQKLMQAMSMV-PTHQVA 433
                    M  M  V PT+ VA
Sbjct: 420 NSVPFATSSMYTMGQVAPTNGVA 442

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225461326|ref|XP_002284562.1| PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD5-like isoform 1 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224115066|ref|XP_002316931.1| predicted protein [Populus trichocarpa] gi|222859996|gb|EEE97543.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224123040|ref|XP_002330426.1| predicted protein [Populus trichocarpa] gi|222871811|gb|EEF08942.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|359806292|ref|NP_001240964.1| uncharacterized protein LOC100807561 [Glycine max] gi|255635528|gb|ACU18115.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|255580436|ref|XP_002531044.1| Stromal membrane-associated protein, putative [Ricinus communis] gi|223529372|gb|EEF31337.1| Stromal membrane-associated protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356543996|ref|XP_003540442.1| PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD5-like [Glycine max] Back     alignment and taxonomy information
>gi|449464762|ref|XP_004150098.1| PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD5-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356549775|ref|XP_003543266.1| PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD5-like [Glycine max] Back     alignment and taxonomy information
>gi|297796307|ref|XP_002866038.1| ARF-GAP domain 5 [Arabidopsis lyrata subsp. lyrata] gi|297311873|gb|EFH42297.1| ARF-GAP domain 5 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query471
TAIR|locus:2162580483 AGD5 "AT5G54310" [Arabidopsis 0.953 0.929 0.532 3.2e-113
TAIR|locus:2090517232 AGD15 "AT3G17660" [Arabidopsis 0.263 0.534 0.758 4.6e-50
ZFIN|ZDB-GENE-060920-2483 smap1 "stromal membrane-associ 0.641 0.625 0.340 3.6e-40
WB|WBGene00012359495 W09D10.1 [Caenorhabditis elega 0.261 0.248 0.535 1.6e-37
ASPGD|ASPL0000049357565 AN1931 [Emericella nidulans (t 0.273 0.228 0.511 2.8e-36
UNIPROTKB|Q5F413428 SMAP2 "Stromal membrane-associ 0.348 0.383 0.423 5e-35
UNIPROTKB|A0FI88473 SMAP1 "Uncharacterized protein 0.259 0.257 0.515 8.1e-35
FB|FBgn0033349517 CG8243 [Drosophila melanogaste 0.636 0.580 0.318 8.3e-35
CGD|CAL0003973387 orf19.1396 [Candida albicans ( 0.407 0.496 0.408 2.1e-34
UNIPROTKB|Q8WU79429 SMAP2 "Stromal membrane-associ 0.280 0.307 0.464 2.1e-34
TAIR|locus:2162580 AGD5 "AT5G54310" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1117 (398.3 bits), Expect = 3.2e-113, P = 3.2e-113
 Identities = 257/483 (53%), Positives = 303/483 (62%)

Query:     1 MNEKANVSKELNARHRKILEGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRS 60
             MNEKANVSKELNARHRKILEGLLK PENRECADCK KGPRWASVNLGIFICMQCSGIHRS
Sbjct:     1 MNEKANVSKELNARHRKILEGLLKHPENRECADCKTKGPRWASVNLGIFICMQCSGIHRS 60

Query:    61 LGVHISKVRSATLDTWLPEQVAFIQSMGNEKANSYWEAELPPNYDRVGIENFIRAKYEEK 120
             LGVHISKVRSATLDTWLPEQVAFIQSMGN+KANSYWEAELPPNYDRVGIENFIRAKYEEK
Sbjct:    61 LGVHISKVRSATLDTWLPEQVAFIQSMGNDKANSYWEAELPPNYDRVGIENFIRAKYEEK 120

Query:   121 RWVSRDGQANSPPRGLEEKA-SIHWQRPGEKSGHGYTDNSENLSEERKHVQAPSTKDSVP 179
             RWVSR  +A SPPR  +E+  S+    PG +  HG++ +  NL EERK + A  T+++V 
Sbjct:   121 RWVSRGEKARSPPRVEQERRKSVERSGPGYE--HGHSSSPVNLFEERKTIPASRTRNNVA 178

Query:   180 AARISLPLPPRGPDQVVAITKPQQT-ESTVAPAGATNQSSDANLAVPPPKVDFASDLFDM 238
             A RI+LP+PP+GP QV+   KPQQ  ES   P     Q+ +   A  PPKVDFA+DLF+M
Sbjct:   179 ATRINLPVPPQGPSQVI---KPQQKMESAATPVEREKQAVNVAPASDPPKVDFATDLFNM 235

Query:   239 LSGDSPXXXXXXXXXXXXXL----WAGFQSAVETSTAEKKDSTKAVESS--PQSATGIED 292
             LS D                    WAGFQSA    TAEK  + K  ESS  P S++  ED
Sbjct:   236 LSMDDSTTNTSEATPGDTPADDNSWAGFQSAGSGQTAEKIVTAKPAESSSPPASSSDFED 295

Query:   293 LFKDSPSLATPSSSEKPQKDLKNDIMSLFEKSNMVSPFXXXXXXXXXXXXXXXXXXXXXX 352
             LFKD+P+L T    ++  KD+K DIMSLFEK+N+VSPF                      
Sbjct:   296 LFKDTPNLTT----QQAPKDVKGDIMSLFEKTNIVSPFAMHQQQVAMLAQQQALYMAAAK 351

Query:   353 KSGGDPKFSSSFQLPVSNGTNLPS-NFGN----QIPGIMMPGAGTADLQKLMQAMSI-AP 406
              +GG P   +  Q  ++N  N+ S N+ N    QIPG+  P  G ADLQKLMQ M++ A 
Sbjct:   352 AAGGTPNGVN--QQAIANALNVASANWSNPGGYQIPGMTNPVGGQADLQKLMQNMNMNAN 409

Query:   407 AQQVGAGPAD--LQKLMQAM-SMVPTHQV------AAGPADIQKLMQAMSMAPTHQGGNS 457
                  A P +  LQ    +  +M   +QV      + G        Q  S  P+ Q G  
Sbjct:   410 MNTRPAQPQENTLQYPSSSFYTMGQANQVNGMTPNSTGKPQSSSATQPTSTTPSSQSGKD 469

Query:   458 VPF 460
               F
Sbjct:   470 FDF 472
GO:0003677 "DNA binding" evidence=ISS
GO:0005634 "nucleus" evidence=ISM;ISS
GO:0008060 "ARF GTPase activator activity" evidence=IEA
GO:0008270 "zinc ion binding" evidence=IEA
GO:0032312 "regulation of ARF GTPase activity" evidence=IEA
GO:0005829 "cytosol" evidence=IDA
GO:0005768 "endosome" evidence=IDA
GO:0005802 "trans-Golgi network" evidence=IDA
GO:0010227 "floral organ abscission" evidence=IMP
GO:0032857 "activation of ARF GTPase activity" evidence=IDA
GO:0006499 "N-terminal protein myristoylation" evidence=RCA
TAIR|locus:2090517 AGD15 "AT3G17660" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-060920-2 smap1 "stromal membrane-associated protein 1" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
WB|WBGene00012359 W09D10.1 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
ASPGD|ASPL0000049357 AN1931 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
UNIPROTKB|Q5F413 SMAP2 "Stromal membrane-associated protein 2" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|A0FI88 SMAP1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
FB|FBgn0033349 CG8243 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
CGD|CAL0003973 orf19.1396 [Candida albicans (taxid:5476)] Back     alignment and assigned GO terms
UNIPROTKB|Q8WU79 SMAP2 "Stromal membrane-associated protein 2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9FL69AGD5_ARATHNo assigned EC number0.63650.82370.8033yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query471
pfam01412117 pfam01412, ArfGap, Putative GTPase activating prot 1e-61
smart00105119 smart00105, ArfGap, Putative GTP-ase activating pr 8e-49
COG5347319 COG5347, COG5347, GTPase-activating protein that r 3e-38
PLN03114395 PLN03114, PLN03114, ADP-ribosylation factor GTPase 6e-18
PLN03119 648 PLN03119, PLN03119, putative ADP-ribosylation fact 2e-14
PLN03131 705 PLN03131, PLN03131, hypothetical protein; Provisio 3e-14
>gnl|CDD|216485 pfam01412, ArfGap, Putative GTPase activating protein for Arf Back     alignment and domain information 
 Score =  196 bits (500), Expect = 1e-61
 Identities = 67/117 (57%), Positives = 85/117 (72%), Gaps = 6/117 (5%)

Query: 16  RKILEGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDT 75
           +++L  L KLP N+ CADC A  P WAS+NLGIFIC++CSG+HRSLGVHISKVRS TLD 
Sbjct: 1   KRLLRELRKLPGNKVCADCGAPNPTWASLNLGIFICIRCSGVHRSLGVHISKVRSLTLDK 60

Query: 76  WLPEQVAFIQSMGNEKANSYWEAELPPNY------DRVGIENFIRAKYEEKRWVSRD 126
           W PEQ+ F+++ GN++AN +WEA LPP        DR   E+FIRAKY EK +   +
Sbjct: 61  WTPEQLEFMKAGGNKRANEFWEANLPPPKPPPSSSDREKRESFIRAKYVEKLFAEAE 117

Putative zinc fingers with GTPase activating proteins (GAPs) towards the small GTPase, Arf. The GAP of ARD1 stimulates GTPase hydrolysis for ARD1 but not ARFs. Length = 117
>gnl|CDD|214518 smart00105, ArfGap, Putative GTP-ase activating proteins for the small GTPase, ARF Back     alignment and domain information
>gnl|CDD|227651 COG5347, COG5347, GTPase-activating protein that regulates ARFs (ADP-ribosylation factors), involved in ARF-mediated vesicular transport [Intracellular trafficking and secretion] Back     alignment and domain information
>gnl|CDD|178661 PLN03114, PLN03114, ADP-ribosylation factor GTPase-activating protein AGD10; Provisional Back     alignment and domain information
>gnl|CDD|178666 PLN03119, PLN03119, putative ADP-ribosylation factor GTPase-activating protein AGD14; Provisional Back     alignment and domain information
>gnl|CDD|178677 PLN03131, PLN03131, hypothetical protein; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 471
KOG0703287 consensus Predicted GTPase-activating protein [Sig 100.0
PLN03119 648 putative ADP-ribosylation factor GTPase-activating 100.0
PLN03131 705 hypothetical protein; Provisional 100.0
PF01412116 ArfGap: Putative GTPase activating protein for Arf 100.0
smart00105112 ArfGap Putative GTP-ase activating proteins for th 100.0
COG5347319 GTPase-activating protein that regulates ARFs (ADP 100.0
PLN03114395 ADP-ribosylation factor GTPase-activating protein 99.96
KOG0704386 consensus ADP-ribosylation factor GTPase activator 99.95
KOG0706454 consensus Predicted GTPase-activating protein [Sig 99.93
KOG0705749 consensus GTPase-activating protein Centaurin gamm 99.92
KOG0521785 consensus Putative GTPase activating proteins (GAP 99.86
KOG0702524 consensus Predicted GTPase-activating protein [Sig 99.82
KOG0818 669 consensus GTPase-activating proteins of the GIT fa 99.79
KOG1117 1186 consensus Rho- and Arf-GTPase activating protein A 99.69
KOG0521785 consensus Putative GTPase activating proteins (GAP 94.09
>KOG0703 consensus Predicted GTPase-activating protein [Signal transduction mechanisms] Back     alignment and domain information 
Probab=100.00  E-value=2.6e-46  Score=370.08  Aligned_cols=276  Identities=36%  Similarity=0.525  Sum_probs=191.4

Q ss_pred             ccHHHHHHHHHHHHHhhcCCCCCCCcCCCCCCCCceecchhHHHhHhhhhhhhcCCCccceeeeccCCCCCHHHHHHHHh
Q 012078            7 VSKELNARHRKILEGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAFIQS   86 (471)
Q Consensus         7 ~sk~~~ar~ekiL~~Llk~P~Nk~CADCGa~~P~WaSvn~GVFLC~~CSgIHR~LG~hISkVKSLsLD~Wt~eeV~~Lq~   86 (471)
                      +++...++++++|++||+.|+|++|||||+++|+|||+|+|||||++|+||||+||+||||||||+||.|++|+|+.|+.
T Consensus         4 ~~~~~~~~~~~~l~~Ll~~~~N~~CADC~a~~P~WaSwnlGvFiC~~C~giHR~lg~hiSkVkSv~LD~W~~eqv~~m~~   83 (287)
T KOG0703|consen    4 VEKGSNERNKRRLRELLREPDNKVCADCGAKGPRWASWNLGVFICLRCAGIHRSLGVHISKVKSVTLDEWTDEQVDFMIS   83 (287)
T ss_pred             ccccccchHHHHHHHHHcCcccCcccccCCCCCCeEEeecCeEEEeecccccccccchhheeeeeeccccCHHHHHHHHH
Confidence            44456789999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCchHHHHHHhhcCCCCCChh----HHHHHHHHHhhhcccccCCCCCCCCCCccccccccccCCCCCCCCCCCCCCCcch
Q 012078           87 MGNEKANSYWEAELPPNYDRV----GIENFIRAKYEEKRWVSRDGQANSPPRGLEEKASIHWQRPGEKSGHGYTDNSENL  162 (471)
Q Consensus        87 ~GN~~aN~iwEa~lPp~~d~~----~~e~FIraKY~eKrFv~~~~~~~~ps~~~dek~~~~~~r~~~~~g~~~~~s~~~~  162 (471)
                      +||.++|.|||+++|..++++    .+|+|||+|||.|+|+.++..-....+.+++..    .|...+..+.+...++..
T Consensus        84 ~GN~~an~~~ea~~p~~~~~p~~d~~~e~FIR~KYE~kkf~~~~~~~~s~~~~~~~~~----k~~~~~~~~~~~s~s~~~  159 (287)
T KOG0703|consen   84 MGNAKANSYYEAKLPDPFRRPGPDDLVEQFIRDKYERKKFLDPEEDITSKPGSRDEES----KRSDKRSRKLSSSLSRSF  159 (287)
T ss_pred             HcchhhhhhccccCCccccCCChHHHHHHHHHHHHhhhhhccchhhcccCCCcccccc----cccccCccccccchhhhh
Confidence            999999999999999887664    499999999999999997621111122222221    112233344444444433


Q ss_pred             hHhhhcCCCCCCCCCCccccccCCCCCCCCCcccccCCCCCCCCccCCCCcCCcCcCCCCCCCCCcccccccccccCCCC
Q 012078          163 SEERKHVQAPSTKDSVPAARISLPLPPRGPDQVVAITKPQQTESTVAPAGATNQSSDANLAVPPPKVDFASDLFDMLSGD  242 (471)
Q Consensus       163 f~e~~~~~~~~~~~a~pasr~~~pa~~~~~~~v~p~Pkpq~~eP~~~~~~~~~~~~d~~~~~~~pkvd~atdlfnmLsmD  242 (471)
                      +. ...       ...-..+.  +...                    +.......++..........++. ++.+.++++
T Consensus       160 ~~-~~r-------~~~~~~~~--~~~s--------------------~~~~~~~~~~~~~~~i~~~~~~~-~~~s~~n~~  208 (287)
T KOG0703|consen  160 VK-SAR-------EDQLKYFL--PKTS--------------------QPVDDLATFQGPIASPHNLQTTY-SLNSTLNIF  208 (287)
T ss_pred             hh-hcc-------cccccccc--ccCC--------------------CCchhhhhccCccccccchheee-ccccccccc
Confidence            33 110       11111111  1111                    00001111122233455677777 888888888


Q ss_pred             CCCCCCCcc----ccCCCCccccccccccccccccCCCCCcCCCCCCCcccccccccCCCCCCCCCCCCCCcchhhhhHH
Q 012078          243 SPNENSSEA----ASADDNLWAGFQSAVETSTAEKKDSTKAVESSPQSATGIEDLFKDSPSLATPSSSEKPQKDLKNDIM  318 (471)
Q Consensus       243 ~~tengS~A----ss~dd~~wagFqsA~~~sta~k~~~a~a~eS~~~S~sg~eDlFkds~~~~~~~~~~~~qk~~KndIm  318 (471)
                      +   +++++    + +.+..|+.|+.+...-+ +...+..+..+....-.+.+ ++++-+..+.    .      . .|+
T Consensus       209 ~---~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~s~~~~f~~~~-~~~~~~~~~~----~------~-~~~  271 (287)
T KOG0703|consen  209 G---SGKEAADSFT-LRAARFAPLAVAFSTVT-EDLVPFLQRNSLSEGFMEKT-LSKPKRWFGT----Q------Q-SKS  271 (287)
T ss_pred             c---CccccCCCcc-cccccccccccccccCc-cccccccccccccccccCcc-cccccccccc----C------c-ccc
Confidence            8   33333    4 78888999998765555 66666666666555555555 7777333322    2      5 899


Q ss_pred             HhhccCCcCCCchhhHH
Q 012078          319 SLFEKSNMVSPFAMHQQ  335 (471)
Q Consensus       319 sLfeksn~~spf~~~qq  335 (471)
                      +|| +-..+.||..++|
T Consensus       272 ~~~-~~~~~~~~~~~~~  287 (287)
T KOG0703|consen  272 SLF-FLDGNVPFGSKES  287 (287)
T ss_pred             ccc-cccccccccccCC
Confidence            999 9999999987764

>PLN03119 putative ADP-ribosylation factor GTPase-activating protein AGD14; Provisional Back     alignment and domain information
>PLN03131 hypothetical protein; Provisional Back     alignment and domain information
>PF01412 ArfGap: Putative GTPase activating protein for Arf; InterPro: IPR001164 This entry describes a family of small GTPase activating proteins, for example ARF1-directed GTPase-activating protein, the cycle control GTPase activating protein (GAP) GCS1 which is important for the regulation of the ADP ribosylation factor ARF, a member of the Ras superfamily of GTP-binding proteins [] Back     alignment and domain information
>smart00105 ArfGap Putative GTP-ase activating proteins for the small GTPase, ARF Back     alignment and domain information
>COG5347 GTPase-activating protein that regulates ARFs (ADP-ribosylation factors), involved in ARF-mediated vesicular transport [Intracellular trafficking and secretion] Back     alignment and domain information
>PLN03114 ADP-ribosylation factor GTPase-activating protein AGD10; Provisional Back     alignment and domain information
>KOG0704 consensus ADP-ribosylation factor GTPase activator [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton] Back     alignment and domain information
>KOG0706 consensus Predicted GTPase-activating protein [Signal transduction mechanisms] Back     alignment and domain information
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms] Back     alignment and domain information
>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms] Back     alignment and domain information
>KOG0702 consensus Predicted GTPase-activating protein [Signal transduction mechanisms] Back     alignment and domain information
>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms] Back     alignment and domain information
>KOG1117 consensus Rho- and Arf-GTPase activating protein ARAP3 [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information
>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query471
2iqj_A134 Crystal Structure Of The Gap Domain Of Smap1l (Loc6 1e-32
2crr_A141 Solution Structure Of Arfgap Domain From Human Smap 2e-31
3jue_A368 Crystal Structure Of Arfgap And Ank Repeat Domain O 2e-24
4f1p_A368 Crystal Structure Of Mutant S554d For Arfgap And An 2e-24
3t9k_A390 Crystal Structure Of Acap1 C-portion Mutant S554d F 2e-24
3feh_A386 Crystal Structure Of Full Length Centaurin Alpha-1 5e-22
3fm8_C392 Crystal Structure Of Full Length Centaurin Alpha-1 9e-22
3sub_A163 Crystal Structure Of The Catalytic Domain Of Plasmo 3e-19
2b0o_E301 Crystal Structure Of Uplc1 Gap Domain Length = 301 6e-19
1dcq_A278 Crystal Structure Of The Arf-Gap Domain And Ankyrin 7e-19
3lvq_E497 The Crystal Structure Of Asap3 In Complex With Arf6 1e-18
2owa_A138 Crystal Structure Of Putative Gtpase Activating Pro 5e-17
3o47_A329 Crystal Structure Of Arfgap1-Arf1 Fusion Protein Le 2e-16
2olm_A140 Arfgap Domain Of Hiv-1 Rev Binding Protein Length = 4e-16
2p57_A144 Gap Domain Of Znf289, An Id1-Regulated Zinc Finger 7e-16
3dwd_A147 Crystal Structure Of The Arfgap Domain Of Human Arf 8e-16
2d9l_A134 Solution Structure Of The Arfgap Domain Of Human Ri 1e-15
2crw_A149 Solution Structure Of The Arfgap Domain Of Adp-Ribo 1e-15
>pdb|2IQJ|A Chain A, Crystal Structure Of The Gap Domain Of Smap1l (Loc64744) Stromal Membrane-Associated Protein 1-Like Length = 134 Back     alignment and structure 
Iteration: 1

 Score =  137 bits (344), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 61/122 (50%), Positives = 86/122 (70%), Gaps = 4/122 (3%)
Query: 14  RHRKILEGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATL 73
           R++ +L  LL   +N+ CADC++KGPRWAS N+G+FIC++C+GIHR+LGVHIS+V+S  L
Sbjct: 13  RYQAVLANLLLEEDNKFCADCQSKGPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNL 72
Query: 74  DTWLPEQVAFIQSMGNEKANSYWEAELPPNYDR----VGIENFIRAKYEEKRWVSRDGQA 129
           D W  EQ+  +Q MGN KAN  +EA LP  + R      +E FIR KYE+K+++ R    
Sbjct: 73  DQWTQEQIQCMQEMGNGKANRLYEAYLPETFRRPQIDPAVEGFIRDKYEKKKYMDRSLDI 132
Query: 130 NS 131
           N+
Sbjct: 133 NA 134
>pdb|2CRR|A Chain A, Solution Structure Of Arfgap Domain From Human Smap1 Length = 141 Back     alignment and structure
>pdb|3JUE|A Chain A, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1 Length = 368 Back     alignment and structure
>pdb|4F1P|A Chain A, Crystal Structure Of Mutant S554d For Arfgap And Ank Repeat Domain Of Acap1 Length = 368 Back     alignment and structure
>pdb|3T9K|A Chain A, Crystal Structure Of Acap1 C-portion Mutant S554d Fused With Integrin Beta1 Peptide Length = 390 Back     alignment and structure
>pdb|3FEH|A Chain A, Crystal Structure Of Full Length Centaurin Alpha-1 Length = 386 Back     alignment and structure
>pdb|3FM8|C Chain C, Crystal Structure Of Full Length Centaurin Alpha-1 Bound With The Fha Domain Of Kif13b (Capri Target) Length = 392 Back     alignment and structure
>pdb|3SUB|A Chain A, Crystal Structure Of The Catalytic Domain Of Plasmodium Falciparum Arf Gtpase Activating Protein Length = 163 Back     alignment and structure
>pdb|2B0O|E Chain E, Crystal Structure Of Uplc1 Gap Domain Length = 301 Back     alignment and structure
>pdb|1DCQ|A Chain A, Crystal Structure Of The Arf-Gap Domain And Ankyrin Repeats Of Papbeta Length = 278 Back     alignment and structure
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In Trans State Length = 497 Back     alignment and structure
>pdb|2OWA|A Chain A, Crystal Structure Of Putative Gtpase Activating Protein For Adp Ribosylation Factor From Cryptosporidium Parvum (Cgd5_1040) Length = 138 Back     alignment and structure
>pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein Length = 329 Back     alignment and structure
>pdb|2OLM|A Chain A, Arfgap Domain Of Hiv-1 Rev Binding Protein Length = 140 Back     alignment and structure
>pdb|2P57|A Chain A, Gap Domain Of Znf289, An Id1-Regulated Zinc Finger Protein Length = 144 Back     alignment and structure
>pdb|3DWD|A Chain A, Crystal Structure Of The Arfgap Domain Of Human Arfgap1 Length = 147 Back     alignment and structure
>pdb|2D9L|A Chain A, Solution Structure Of The Arfgap Domain Of Human Rip Length = 134 Back     alignment and structure
>pdb|2CRW|A Chain A, Solution Structure Of The Arfgap Domain Of Adp-Ribosylation Factor Gtpaseactivating Protein 3 (Arfgap 3) Length = 149 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query471
2crr_A141 Stromal membrane-associated protein SMAP1B; arfgap 2e-67
2iqj_A134 Stromal membrane-associated protein 1-like; zinc, 3e-65
3jue_A368 Arfgap with coiled-coil, ANK repeat and PH domain 1e-62
2olm_A140 Nucleoporin-like protein RIP; arfgap, GTPase-activ 3e-62
1dcq_A278 PYK2-associated protein beta; zinc-binding module, 1e-60
2b0o_E301 UPLC1; arfgap, structural genomics, structural gen 3e-60
2owa_A138 Arfgap-like finger domain containing protein; zinc 3e-58
3lju_X386 ARF-GAP with dual PH domain-containing protein 1; 2e-57
3sub_A163 ADP-ribosylation factor GTPase-activating protein; 9e-53
3dwd_A147 ADP-ribosylation factor GTPase-activating protein; 3e-52
2crw_A149 ARF GAP 3, ADP-ribosylation factor GTPase-activati 3e-48
2p57_A144 GTPase-activating protein ZNF289; zinc finger, GAP 7e-48
3lvq_E497 ARF-GAP with SH3 domain, ANK repeat and PH domain 3e-43
3o47_A329 ADP-ribosylation factor GTPase-activating protein 1e-32
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-04
>2crr_A Stromal membrane-associated protein SMAP1B; arfgap domain, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 141 Back     alignment and structure
 Score =  211 bits (539), Expect = 2e-67
 Identities = 65/137 (47%), Positives = 94/137 (68%), Gaps = 4/137 (2%)

Query: 2   NEKANVSKELNARHRKILEGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSL 61
           +  +  +++LN +H+ IL  LL+  +N+ CADC+AKGPRWAS N+G+FIC++C+GIHR+L
Sbjct: 3   SGSSGKAQKLNEQHQLILSKLLREEDNKYCADCEAKGPRWASWNIGVFICIRCAGIHRNL 62

Query: 62  GVHISKVRSATLDTWLPEQVAFIQSMGNEKANSYWEAELPPNY----DRVGIENFIRAKY 117
           GVHIS+V+S  LD W  EQ+  +Q MGN KA   +EA LP N+        +E FIR KY
Sbjct: 63  GVHISRVKSVNLDQWTAEQIQCMQDMGNTKARLLYEANLPENFRRPQTDQAVEFFIRDKY 122

Query: 118 EEKRWVSRDGQANSPPR 134
           E+K++  ++  A S P 
Sbjct: 123 EKKKYYDKNAIAISGPS 139
>2iqj_A Stromal membrane-associated protein 1-like; zinc, structural genomics, structural genomics consortium, SGC, protein transport; 1.90A {Homo sapiens} Length = 134 Back     alignment and structure
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368 Back     alignment and structure
>2olm_A Nucleoporin-like protein RIP; arfgap, GTPase-activating protein, REV-interacting protein, human immunodeficiency virus, AIDS, structural genomics; 1.48A {Homo sapiens} PDB: 2d9l_A Length = 140 Back     alignment and structure
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278 Back     alignment and structure
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301 Back     alignment and structure
>2owa_A Arfgap-like finger domain containing protein; zinc finger protein, cysteine-rich motif, GTPase activation; 2.00A {Cryptosporidium parvum iowa II} Length = 138 Back     alignment and structure
>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C* Length = 386 Back     alignment and structure
>3sub_A ADP-ribosylation factor GTPase-activating protein; protein trafficking, hydrolase AC; 2.40A {Plasmodium falciparum 3D7} Length = 163 Back     alignment and structure
>3dwd_A ADP-ribosylation factor GTPase-activating protein; GAP, structural genomics consorti ER-golgi transport, golgi apparatus, GTPase activation; 2.40A {Homo sapiens} Length = 147 Back     alignment and structure
>2crw_A ARF GAP 3, ADP-ribosylation factor GTPase-activating protein 3; arfgap domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 149 Back     alignment and structure
>2p57_A GTPase-activating protein ZNF289; zinc finger, GAP, structural genomics, structural genomics consortium, SGC, metal binding protein; 1.80A {Homo sapiens} Length = 144 Back     alignment and structure
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497 Back     alignment and structure
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens} Length = 329 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query471
2iqj_A134 Stromal membrane-associated protein 1-like; zinc, 100.0
2crr_A141 Stromal membrane-associated protein SMAP1B; arfgap 100.0
2olm_A140 Nucleoporin-like protein RIP; arfgap, GTPase-activ 100.0
3jue_A368 Arfgap with coiled-coil, ANK repeat and PH domain 100.0
3lju_X386 ARF-GAP with dual PH domain-containing protein 1; 100.0
2owa_A138 Arfgap-like finger domain containing protein; zinc 100.0
2crw_A149 ARF GAP 3, ADP-ribosylation factor GTPase-activati 100.0
3dwd_A147 ADP-ribosylation factor GTPase-activating protein; 99.98
2p57_A144 GTPase-activating protein ZNF289; zinc finger, GAP 99.97
3sub_A163 ADP-ribosylation factor GTPase-activating protein; 99.97
2b0o_E301 UPLC1; arfgap, structural genomics, structural gen 99.96
3lvq_E497 ARF-GAP with SH3 domain, ANK repeat and PH domain 99.96
1dcq_A278 PYK2-associated protein beta; zinc-binding module, 99.96
3o47_A329 ADP-ribosylation factor GTPase-activating protein 99.95
1u5k_A244 Hypothetical protein; OBD-fold, Zn-binding, recomb 83.3
>2iqj_A Stromal membrane-associated protein 1-like; zinc, structural genomics, structural genomics consortium, SGC, protein transport; 1.90A {Homo sapiens} Back     alignment and structure
Probab=100.00  E-value=3.4e-41  Score=301.81  Aligned_cols=122  Identities=49%  Similarity=0.917  Sum_probs=107.5

Q ss_pred             ccccHHHHHHHHHHHHHhhcCCCCCCCcCCCCCCCCceecchhHHHhHhhhhhhhcCCCccceeeeccCCCCCHHHHHHH
Q 012078            5 ANVSKELNARHRKILEGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAFI   84 (471)
Q Consensus         5 ~~~sk~~~ar~ekiL~~Llk~P~Nk~CADCGa~~P~WaSvn~GVFLC~~CSgIHR~LG~hISkVKSLsLD~Wt~eeV~~L   84 (471)
                      +..|++..++++++|+.|++.|+|+.|+|||+++|+|+|+|||||||++|+||||+||+|||+||||+||+|++++|++|
T Consensus         4 ~~~~~~~~e~~~~~l~~L~~~p~N~~CaDCg~~~P~WaS~n~GvfiC~~CsgiHR~lG~hiS~VkSl~ld~w~~~~l~~m   83 (134)
T 2iqj_A            4 TGKSVKDVDRYQAVLANLLLEEDNKFCADCQSKGPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNLDQWTQEQIQCM   83 (134)
T ss_dssp             ---------CCHHHHHHHTTSGGGGBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCHHHHHHH
T ss_pred             ccccHhHHHHHHHHHHHHHcCcCCCcCCcCcCCCCCeEEecCCEEEhHhhhHHHhcCCCCCCceeeccccCCCHHHHHHH
Confidence            35678888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhCchHHHHHHhhcCCCCCC----hhHHHHHHHHHhhhcccccCC
Q 012078           85 QSMGNEKANSYWEAELPPNYD----RVGIENFIRAKYEEKRWVSRD  126 (471)
Q Consensus        85 q~~GN~~aN~iwEa~lPp~~d----~~~~e~FIraKY~eKrFv~~~  126 (471)
                      +.+||.++|.|||+++|+.+.    ...+|+|||+||++|+|+.+.
T Consensus        84 ~~~GN~~an~~~e~~lp~~~~~P~~~~~~e~fIr~KY~~k~f~~~~  129 (134)
T 2iqj_A           84 QEMGNGKANRLYEAYLPETFRRPQIDPAVEGFIRDKYEKKKYMDRS  129 (134)
T ss_dssp             HTCHHHHHHHHHTTTCCSSCCCCCSHHHHHHHHHHHHTSCTTCCTT
T ss_pred             HHHchHHHHHHHHhcCCccCCCCCchHHHHHHHHHHHhCCeeeCCc
Confidence            999999999999999986542    346899999999999999764
>2crr_A Stromal membrane-associated protein SMAP1B; arfgap domain, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2olm_A Nucleoporin-like protein RIP; arfgap, GTPase-activating protein, REV-interacting protein, human immunodeficiency virus, AIDS, structural genomics; 1.48A {Homo sapiens} PDB: 2d9l_A Back     alignment and structure
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A Back     alignment and structure
>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C* Back     alignment and structure
>2owa_A Arfgap-like finger domain containing protein; zinc finger protein, cysteine-rich motif, GTPase activation; 2.00A {Cryptosporidium parvum iowa II} Back     alignment and structure
>2crw_A ARF GAP 3, ADP-ribosylation factor GTPase-activating protein 3; arfgap domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3dwd_A ADP-ribosylation factor GTPase-activating protein; GAP, structural genomics consorti ER-golgi transport, golgi apparatus, GTPase activation; 2.40A {Homo sapiens} Back     alignment and structure
>2p57_A GTPase-activating protein ZNF289; zinc finger, GAP, structural genomics, structural genomics consortium, SGC, metal binding protein; 1.80A {Homo sapiens} Back     alignment and structure
>3sub_A ADP-ribosylation factor GTPase-activating protein; protein trafficking, hydrolase AC; 2.40A {Plasmodium falciparum 3D7} Back     alignment and structure
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Back     alignment and structure
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Back     alignment and structure
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Back     alignment and structure
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens} Back     alignment and structure
>1u5k_A Hypothetical protein; OBD-fold, Zn-binding, recombination,replication; 2.00A {Deinococcus radiodurans} SCOP: b.40.4.13 g.45.1.2 PDB: 1w3s_A 2v1c_C Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 471
d1dcqa2122 g.45.1.1 (A:247-368) Pyk2-associated protein beta 5e-50
d1ea9c1121 b.1.18.2 (C:1-121) Maltogenic amylase, N-terminal 0.002
>d1dcqa2 g.45.1.1 (A:247-368) Pyk2-associated protein beta ARF-GAP domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 122 Back     information, alignment and structure

class: Small proteins
fold: ArfGap/RecO-like zinc finger
superfamily: ArfGap/RecO-like zinc finger
family: Pyk2-associated protein beta ARF-GAP domain
domain: Pyk2-associated protein beta ARF-GAP domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  164 bits (416), Expect = 5e-50
 Identities = 43/119 (36%), Positives = 66/119 (55%), Gaps = 8/119 (6%)

Query: 16  RKILEGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDT 75
           ++I+  + ++  N  C DC A  P W S NLGI  C++CSGIHR LGVH S+++S TLD 
Sbjct: 3   KEIISEVQRMTGNDVCCDCGAPDPTWLSTNLGILTCIECSGIHRELGVHYSRMQSLTLDV 62

Query: 76  WLPEQVAFIQSMGNEKANSYWEAELP--------PNYDRVGIENFIRAKYEEKRWVSRD 126
               ++   +++GN   N   E  LP        P  D +  +++I AKY E+R+  + 
Sbjct: 63  LGTSELLLAKNIGNAGFNEIMECCLPSEDPVKPNPGSDMIARKDYITAKYMERRYARKK 121

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query471
d1dcqa2122 Pyk2-associated protein beta ARF-GAP domain {Mouse 100.0
d1u5ka2157 Recombinational repair protein RecO, C-terminal do 84.64
>d1dcqa2 g.45.1.1 (A:247-368) Pyk2-associated protein beta ARF-GAP domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: Small proteins
fold: ArfGap/RecO-like zinc finger
superfamily: ArfGap/RecO-like zinc finger
family: Pyk2-associated protein beta ARF-GAP domain
domain: Pyk2-associated protein beta ARF-GAP domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.2e-39  Score=284.50  Aligned_cols=111  Identities=38%  Similarity=0.747  Sum_probs=103.8

Q ss_pred             HHHHHHHhhcCCCCCCCcCCCCCCCCceecchhHHHhHhhhhhhhcCCCccceeeeccCCCCCHHHHHHHHhhCchHHHH
Q 012078           15 HRKILEGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAFIQSMGNEKANS   94 (471)
Q Consensus        15 ~ekiL~~Llk~P~Nk~CADCGa~~P~WaSvn~GVFLC~~CSgIHR~LG~hISkVKSLsLD~Wt~eeV~~Lq~~GN~~aN~   94 (471)
                      .+++|++|++.|+|+.|||||+++|+|||++||||||++|+|+||+||+|||+|||++||+|++++|++|+.+||.++|+
T Consensus         2 t~~~l~~l~~~p~N~~CaDC~~~~p~w~s~n~GvfvC~~CsgiHR~lg~~is~VkS~~ld~w~~~~i~~~~~~GN~~~n~   81 (122)
T d1dcqa2           2 TKEIISEVQRMTGNDVCCDCGAPDPTWLSTNLGILTCIECSGIHRELGVHYSRMQSLTLDVLGTSELLLAKNIGNAGFNE   81 (122)
T ss_dssp             HHHHHHHHHHSTTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCGGGGHHHHHSCHHHHHH
T ss_pred             hHHHHHHHHhCCCCCccCCCCCCCCCeEEecCCEEEchhhhHHHhcCCCCceEeeecccCCCCHHHHHHHHHHhHHHHHH
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhcCCCC--------CChhHHHHHHHHHhhhcccccC
Q 012078           95 YWEAELPPN--------YDRVGIENFIRAKYEEKRWVSR  125 (471)
Q Consensus        95 iwEa~lPp~--------~d~~~~e~FIraKY~eKrFv~~  125 (471)
                      +||+++|..        .+...+++||++||++|+|+.+
T Consensus        82 ~~ea~~~~~~~~kp~~~~~~~~r~~fI~~KY~~k~f~~k  120 (122)
T d1dcqa2          82 IMECCLPSEDPVKPNPGSDMIARKDYITAKYMERRYARK  120 (122)
T ss_dssp             HHTTTCCSSSCCSCCTTCCHHHHHHHHHHHHTTCTTSCC
T ss_pred             HHHhhCCcccCcCCCCCccHHHHHHHHHHHHHhCccccc
Confidence            999998632        2345689999999999999975
>d1u5ka2 g.45.1.2 (A:81-237) Recombinational repair protein RecO, C-terminal domain {Deinococcus radiodurans [TaxId: 1299]} Back     information, alignment and structure