Citrus Sinensis ID: 012115

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470
MVQRMAVSLRFALLLFAAFVSFQLISASDDATILYESFDESFEGRWIVSQKDEYKGVWKHSKSEGHEDYGLLVGEPAKKYAIVKELDEPLSLKDGTVVLQYEVRLQNGLECGGAYLKYLRPQEAGWVSKEFDNESPYMIMFGPDKCGATNKVHFILKHKNPKSGEYIEHHLKNPPSVPSDKLTHVYTAILKPDNELRILIDGEEKQKANFLAADDFQPPLIPEKTIPDPDDKKPEDWDERAKIPDPDAVKPEDWDEDAPMEIEDEDAVKPEGWLDDDPEEIDDPEATKPEDWDDEEDGEWEAPKIDNPKCEAAPGCGEWKRPMKRNPAYKGKWHAPHIDNPNYKGIWKPQQIPNPNYFELDKPDFEPIAAVGIEIWTMQDGILFDNILISKDEKVAESYRASAWKPKFDVEKEKLKRVPRANKRTVVKRKKRPRRKKLLLLLLVGGDAIIKQMEAGCLWLLAALLVDYQL
cHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEcccccccccccEEccccccccEEEEEccccccccEEEEcccccccEEEEccccccccccccEEEEEEEEEEccccccccEEEEccccccccccccccccccEEEEEccccccccccEEEEEEEccccccccEEEccccccccccccccEEEEEEEcccccEEEEEccEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEcccccEEcEEEEEccHHHHHHHHHHcccccHHHHHHHHHccccccHHHHHHHHcccccccHHHHHHHHccHHHHHHHHHHHHHHHHHHHHccc
cHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEEccccccccccEEccccccccEEEEEccccccccEEEEccHHHHHHHHcccccccccccccEEEEEEEEEccccccccEEEEEcccccccccHHHccccccEEEEEcccccccccEEEEEEEEccccccEEEEHccccccccccccccEEEEEEEccccEEEEEEccEEEEcccccccccccccccccccccccccccccccccHcccccccccccccccccccccccccccccccccccccccccccccccccccccHcccccccccccccccHccccccccccccccccccccccccccccccccccccccccccccccHcccccccccccEEEEEEEEEccccEEEEEEEEEccHHHHHHHHHHcccccHHHHHHHHHHcccHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
MVQRMAVSLRFALLLFAAFVSFQLisasddatiLYESfdesfegrwivSQKDEYKgvwkhskseghedygllvgepaKKYAIVKEldeplslkdgtVVLQYEVRLQNGLECGGAYLkylrpqeagwvskefdnespymimfgpdkcgatnkVHFILKhknpksgeyiehhlknppsvpsdklTHVYTAIlkpdnelriLIDGEEKQkanflaaddfqpplipektipdpddkkpedwderakipdpdavkpedwdedapmeiededavkpegwldddpeeiddpeatkpedwddeedgeweapkidnpkceaapgcgewkrpmkrnpaykgkwhaphidnpnykgiwkpqqipnpnyfeldkpdfepiaavGIEIWTmqdgilfdnilisKDEKVAESYRasawkpkfdvekeklkrvprankrtvvkrkkrprRKKLLLLLLVGGDAIIKQMEAGCLWLLAALLVDYQL
MVQRMAVSLRFALLLFAAFVSFQLISASDDATILYESFDESFEGRWIVSQKDEYKGVWKhskseghedyglLVGEPAKKYAIVKELdeplslkdgtVVLQYEVRLQNGLECGGAYLKYLRPQEAGWVSKEFDNESPYMIMFGPDKCGATNKVHFILKHKNPKSGEYIEHHLKnppsvpsdKLTHVYTAILKPDNELRILIDGEEKQKANflaaddfqpplipektipdpddkkpedwderakipdpdavkpedwdEDAPmeiededavkpegwldddpeeiddpeatkpedwddeedgeweapkidnpkceaapgcgewkrPMKRNPAYKGKWHAPHIDNPNYKGIWKPQQIPNPNYFELDKPDFEPIAAVGIEIWTMQDGILFDNILISKDEKVAESYrasawkpkfdvekeklkrvprankrtvvkrkkrprrkkllLLLLVGGDAIIKQMEAGCLWLLAALLVDYQL
MVQRMavslrfalllfaafvsfQLISASDDATILYESFDESFEGRWIVSQKDEYKGVWKHSKSEGHEDYGLLVGEPAKKYAIVKELDEPLSLKDGTVVLQYEVRLQNGLECGGAYLKYLRPQEAGWVSKEFDNESPYMIMFGPDKCGATNKVHFILKHKNPKSGEYIEHHLKNPPSVPSDKLTHVYTAILKPDNELRILIDGEEKQKANFLAADDFQPPLIpektipdpddkkpedwdeRAKIPDPDAVKPEDWDEDAPMEIEDEDAVKPEGWLdddpeeiddpeATKPedwddeedgeweAPKIDNPKCEAAPGCGEWKRPMKRNPAYKGKWHAPHIDNPNYKGIWKPQQIPNPNYFELDKPDFEPIAAVGIEIWTMQDGILFDNILISKDEKVAESYRASAWKPKFDVEKEKLKRVPRANkrtvvkrkkrprrkkllllllvGGDAIIKQMEAGCLWLLAALLVDYQL
*****AVSLRFALLLFAAFVSFQLISASDDATILYESFDESFEGRWIVSQKDEYKGVWKHSKSEGHEDYGLLVGEPAKKYAIVKELDEPLSLKDGTVVLQYEVRLQNGLECGGAYLKYLRPQEAGWVSKEFDNESPYMIMFGPDKCGATNKVHFILKHK*********************KLTHVYTAILKPDNELRILIDG*******F*********************************************************************************************************************AYKGKWHAPHIDNPNYKGIWKPQQIPNPNYFELDKPDFEPIAAVGIEIWTMQDGILFDNILISKDEKVAESYRASAWK******************************KKLLLLLLVGGDAIIKQMEAGCLWLLAALLVDY**
******V*LRFALLLFAAFVSFQLISASDDATILYESFDESFEGRWIVSQKDEYKGVWKHSKSEGHEDYGLLVGEPAKKYAIVKELDEPLSLKDGTVVLQYEVRLQNGLECGGAYLKYLRPQE**********ESPYMIMFGPDKCGATNKVHFILKHKNPKSGEYIEHHLKNPPSVPSDKLTHVYTAILKPDNELRILIDGEEKQKANFLAADDFQP******************WDERAKIPDPDAVKPEDWDEDAPMEIEDEDAVKPEGWLDDDPEEIDDPEATKPEDWDDEEDGEWEAPKIDNPKCEAAPGCGEWKRPMKRNPAYKGKWHAPHIDNPNYKGIWKPQQIPNPNYFELDKPDFEPIAAVGIEIWTMQDGILFDNILISKDEKVAESYRASAWKPKF*************************RRKKLLLLLLVGGDAIIKQMEAGCLWLLAALLVDYQL
MVQRMAVSLRFALLLFAAFVSFQLISASDDATILYESFDESFEGRWIVSQKDEYKGVWKHSKSEGHEDYGLLVGEPAKKYAIVKELDEPLSLKDGTVVLQYEVRLQNGLECGGAYLKYLRPQEAGWVSKEFDNESPYMIMFGPDKCGATNKVHFILKHKNPKSGEYIEHHLKNPPSVPSDKLTHVYTAILKPDNELRILIDGEEKQKANFLAADDFQPPLIPEKTIPDP*********ERAKIPDPDAVKPEDWDEDAPMEIEDEDAVKPEGWLDDDPEEIDDPEAT************WEAPKIDNPKCEAAPGCGEWKRPMKRNPAYKGKWHAPHIDNPNYKGIWKPQQIPNPNYFELDKPDFEPIAAVGIEIWTMQDGILFDNILISKDEKVAESYRASAWKPKFDVEKEKLKRVPRANKRTVVKRKKRPRRKKLLLLLLVGGDAIIKQMEAGCLWLLAALLVDYQL
*VQRMAVSLRFALLLFAAFVSFQLISASDDATILYESFDESFEGRWIVSQKDEYKGVWKHSKSEGHEDYGLLVGEPAKKYAIVKELDEPLSLKDGTVVLQYEVRLQNGLECGGAYLKYLRPQEAGWVSKEFDNESPYMIMFGPDKCGATNKVHFILKHKNPKSGEYIEHHLKNPPSVPSDKLTHVYTAILKPDNELRILIDGEEKQKANFLAADDFQPPLIPEKTIPDPDDKKPEDWDERAKIPDPDAVKPEDWDEDAPMEIEDEDAVKPEGWLDDDPEEIDDPEATKPEDWDDEEDGEWEAPKIDNPKCEAAPGCGEWKRPMKRNPAYKGKWHAPHIDNPNYKGIWKPQQIPNPNYFELDKPDFEPIAAVGIEIWTMQDGILFDNILISKDEKVAESYRASAWKPKFDVEKEKLKRVPRANKRTVVKRKKRPRRKKLLLLLLVGGDAIIKQMEAGCLWLLAALLVDYQL
iiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MVQRMAVSLRFALLLFAAFVSFQLISASDDATILYESFDESFEGRWIVSQKDEYKGVWKHSKSEGHEDYGLLVGEPAKKYAIVKELDEPLSLKDGTVVLQYEVRLQNGLECGGAYLKYLRPQEAGWVSKEFDNESPYMIMFGPDKCGATNKVHFILKHKNPKSGEYIEHHLKNPPSVPSDKLTHVYTAILKPDNELRILIDGEEKQKANFLAADDFQPPLIPEKTIPDPDDKKPEDWDERAKIPDPDAVKPEDWDEDAPMEIEDEDAVKPEGWLDDDPEEIDDPEATKPEDWDDEEDGEWEAPKIDNPKCEAAPGCGEWKRPMKRNPAYKGKWHAPHIDNPNYKGIWKPQQIPNPNYFELDKPDFEPIAAVGIEIWTMQDGILFDNILISKDEKVAESYRASAWKPKFDVEKEKLKRVPRANKRTVVKRKKRPRRKKLLLLLLVGGDAIIKQMEAGCLWLLAALLVDYQL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query470 2.2.26 [Sep-21-2011]
P29402530 Calnexin homolog 1 OS=Ara yes no 0.865 0.767 0.812 0.0
Q39817546 Calnexin homolog OS=Glyci no no 0.876 0.754 0.818 0.0
Q38798532 Calnexin homolog 2 OS=Ara no no 0.834 0.736 0.812 0.0
O82709551 Calnexin homolog OS=Pisum N/A no 0.868 0.740 0.769 1e-179
Q39994540 Calnexin homolog OS=Helia N/A no 0.831 0.724 0.787 1e-176
P35564591 Calnexin OS=Mus musculus yes no 0.778 0.619 0.515 1e-106
P35565591 Calnexin OS=Rattus norveg yes no 0.778 0.619 0.512 1e-105
Q5R440592 Calnexin OS=Pongo abelii yes no 0.774 0.614 0.507 1e-104
P24643593 Calnexin OS=Canis familia yes no 0.774 0.613 0.505 1e-104
P27824592 Calnexin OS=Homo sapiens yes no 0.774 0.614 0.502 1e-104
>sp|P29402|CALX1_ARATH Calnexin homolog 1 OS=Arabidopsis thaliana GN=CNX1 PE=1 SV=1 Back     alignment and function desciption
 Score =  701 bits (1808), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 333/410 (81%), Positives = 368/410 (89%), Gaps = 3/410 (0%)

Query: 1   MVQRMAVSLRFALLLFAAFVSFQLISASDDATILYESFDESFEGRWIVSQKDEYKGVWKH 60
           M QR   S+    LL  AFVSFQ +   DD T+LYESFDE F+GRWIVS+  +Y+GVWKH
Sbjct: 1   MRQRQLFSV---FLLLLAFVSFQKLCYCDDQTVLYESFDEPFDGRWIVSKNSDYEGVWKH 57

Query: 61  SKSEGHEDYGLLVGEPAKKYAIVKELDEPLSLKDGTVVLQYEVRLQNGLECGGAYLKYLR 120
           +KSEGHEDYGLLV E A+KY IVKELDEPL+LK+GTVVLQYEVR Q GLECGGAYLKYLR
Sbjct: 58  AKSEGHEDYGLLVSEKARKYGIVKELDEPLNLKEGTVVLQYEVRFQEGLECGGAYLKYLR 117

Query: 121 PQEAGWVSKEFDNESPYMIMFGPDKCGATNKVHFILKHKNPKSGEYIEHHLKNPPSVPSD 180
           PQEAGW  + FD+ESPY IMFGPDKCG TNKVHFILKHKNPKSGEY+EHHLK PPSVP D
Sbjct: 118 PQEAGWTPQGFDSESPYSIMFGPDKCGGTNKVHFILKHKNPKSGEYVEHHLKFPPSVPYD 177

Query: 181 KLTHVYTAILKPDNELRILIDGEEKQKANFLAADDFQPPLIPEKTIPDPDDKKPEDWDER 240
           KL+HVYTAILKPDNE+RIL+DGEEK+KAN L+ +DF+P LIP KTIPDP+DKKPEDWDER
Sbjct: 178 KLSHVYTAILKPDNEVRILVDGEEKKKANLLSGEDFEPALIPAKTIPDPEDKKPEDWDER 237

Query: 241 AKIPDPDAVKPEDWDEDAPMEIEDEDAVKPEGWLDDDPEEIDDPEATKPEDWDDEEDGEW 300
           AKIPDP+AVKPEDWDEDAPMEIEDE+A KPEGWLDD+PEE+DDPEATKPEDWDDEEDG W
Sbjct: 238 AKIPDPNAVKPEDWDEDAPMEIEDEEAEKPEGWLDDEPEEVDDPEATKPEDWDDEEDGMW 297

Query: 301 EAPKIDNPKCEAAPGCGEWKRPMKRNPAYKGKWHAPHIDNPNYKGIWKPQQIPNPNYFEL 360
           EAPKIDNPKCEAAPGCGEWKRPMKRNPAYKGKW +P IDNP YKGIWKP+ IPNP+YFEL
Sbjct: 298 EAPKIDNPKCEAAPGCGEWKRPMKRNPAYKGKWSSPLIDNPAYKGIWKPRDIPNPDYFEL 357

Query: 361 DKPDFEPIAAVGIEIWTMQDGILFDNILISKDEKVAESYRASAWKPKFDV 410
           D+PD+EPIAA+GIEIWTMQDGILFDNILI+KDEKVAE+YR + WKPKFDV
Sbjct: 358 DRPDYEPIAAIGIEIWTMQDGILFDNILIAKDEKVAETYRQTTWKPKFDV 407
Calcium-binding protein that interacts with newly synthesized glycoproteins in the endoplasmic reticulum. It may act in assisting protein assembly and/or in the retention within the ER of unassembled protein subunits. It seems to play a major role in the quality control apparatus of the ER by the retention of incorrectly folded proteins.
Arabidopsis thaliana (taxid: 3702)
>sp|Q39817|CALX_SOYBN Calnexin homolog OS=Glycine max PE=2 SV=1 Back     alignment and function description
>sp|Q38798|CALX2_ARATH Calnexin homolog 2 OS=Arabidopsis thaliana GN=At5g07340 PE=2 SV=2 Back     alignment and function description
>sp|O82709|CALX_PEA Calnexin homolog OS=Pisum sativum PE=2 SV=1 Back     alignment and function description
>sp|Q39994|CALX_HELTU Calnexin homolog OS=Helianthus tuberosus PE=2 SV=1 Back     alignment and function description
>sp|P35564|CALX_MOUSE Calnexin OS=Mus musculus GN=Canx PE=1 SV=1 Back     alignment and function description
>sp|P35565|CALX_RAT Calnexin OS=Rattus norvegicus GN=Canx PE=1 SV=1 Back     alignment and function description
>sp|Q5R440|CALX_PONAB Calnexin OS=Pongo abelii GN=CANX PE=2 SV=2 Back     alignment and function description
>sp|P24643|CALX_CANFA Calnexin OS=Canis familiaris GN=CANX PE=1 SV=3 Back     alignment and function description
>sp|P27824|CALX_HUMAN Calnexin OS=Homo sapiens GN=CANX PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query470
15240353530 calnexin 1 [Arabidopsis thaliana] gi|231 0.865 0.767 0.812 0.0
297797139529 calnexin 1 [Arabidopsis lyrata subsp. ly 0.865 0.769 0.812 0.0
31321896533 putative papillar cell-specific calnexin 0.855 0.754 0.818 0.0
224134230533 predicted protein [Populus trichocarpa] 0.893 0.787 0.824 0.0
255540003542 calnexin, putative [Ricinus communis] gi 0.885 0.767 0.832 0.0
297797141 1401 hypothetical protein ARALYDRAFT_496347 [ 0.810 0.271 0.837 0.0
356527390538 PREDICTED: calnexin homolog [Glycine max 0.882 0.771 0.829 0.0
351727521546 calnexin homolog precursor [Glycine max] 0.876 0.754 0.818 0.0
224119894538 predicted protein [Populus trichocarpa] 0.880 0.769 0.814 0.0
356508884543 PREDICTED: calnexin homolog [Glycine max 0.874 0.756 0.822 0.0
>gi|15240353|ref|NP_200987.1| calnexin 1 [Arabidopsis thaliana] gi|231683|sp|P29402.1|CALX1_ARATH RecName: Full=Calnexin homolog 1; Flags: Precursor gi|16211|emb|CAA79144.1| calnexin homolog [Arabidopsis thaliana] gi|10176872|dbj|BAB10079.1| calnexin homolog precursor [Arabidopsis thaliana] gi|16649021|gb|AAL24362.1| calnexin homolog precursor [Arabidopsis thaliana] gi|21387169|gb|AAM47988.1| calnexin-like protein precursor [Arabidopsis thaliana] gi|21555674|gb|AAM63911.1| calnexin-like protein [Arabidopsis thaliana] gi|332010135|gb|AED97518.1| calnexin 1 [Arabidopsis thaliana] Back     alignment and taxonomy information
 Score =  701 bits (1808), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 333/410 (81%), Positives = 368/410 (89%), Gaps = 3/410 (0%)

Query: 1   MVQRMAVSLRFALLLFAAFVSFQLISASDDATILYESFDESFEGRWIVSQKDEYKGVWKH 60
           M QR   S+    LL  AFVSFQ +   DD T+LYESFDE F+GRWIVS+  +Y+GVWKH
Sbjct: 1   MRQRQLFSV---FLLLLAFVSFQKLCYCDDQTVLYESFDEPFDGRWIVSKNSDYEGVWKH 57

Query: 61  SKSEGHEDYGLLVGEPAKKYAIVKELDEPLSLKDGTVVLQYEVRLQNGLECGGAYLKYLR 120
           +KSEGHEDYGLLV E A+KY IVKELDEPL+LK+GTVVLQYEVR Q GLECGGAYLKYLR
Sbjct: 58  AKSEGHEDYGLLVSEKARKYGIVKELDEPLNLKEGTVVLQYEVRFQEGLECGGAYLKYLR 117

Query: 121 PQEAGWVSKEFDNESPYMIMFGPDKCGATNKVHFILKHKNPKSGEYIEHHLKNPPSVPSD 180
           PQEAGW  + FD+ESPY IMFGPDKCG TNKVHFILKHKNPKSGEY+EHHLK PPSVP D
Sbjct: 118 PQEAGWTPQGFDSESPYSIMFGPDKCGGTNKVHFILKHKNPKSGEYVEHHLKFPPSVPYD 177

Query: 181 KLTHVYTAILKPDNELRILIDGEEKQKANFLAADDFQPPLIPEKTIPDPDDKKPEDWDER 240
           KL+HVYTAILKPDNE+RIL+DGEEK+KAN L+ +DF+P LIP KTIPDP+DKKPEDWDER
Sbjct: 178 KLSHVYTAILKPDNEVRILVDGEEKKKANLLSGEDFEPALIPAKTIPDPEDKKPEDWDER 237

Query: 241 AKIPDPDAVKPEDWDEDAPMEIEDEDAVKPEGWLDDDPEEIDDPEATKPEDWDDEEDGEW 300
           AKIPDP+AVKPEDWDEDAPMEIEDE+A KPEGWLDD+PEE+DDPEATKPEDWDDEEDG W
Sbjct: 238 AKIPDPNAVKPEDWDEDAPMEIEDEEAEKPEGWLDDEPEEVDDPEATKPEDWDDEEDGMW 297

Query: 301 EAPKIDNPKCEAAPGCGEWKRPMKRNPAYKGKWHAPHIDNPNYKGIWKPQQIPNPNYFEL 360
           EAPKIDNPKCEAAPGCGEWKRPMKRNPAYKGKW +P IDNP YKGIWKP+ IPNP+YFEL
Sbjct: 298 EAPKIDNPKCEAAPGCGEWKRPMKRNPAYKGKWSSPLIDNPAYKGIWKPRDIPNPDYFEL 357

Query: 361 DKPDFEPIAAVGIEIWTMQDGILFDNILISKDEKVAESYRASAWKPKFDV 410
           D+PD+EPIAA+GIEIWTMQDGILFDNILI+KDEKVAE+YR + WKPKFDV
Sbjct: 358 DRPDYEPIAAIGIEIWTMQDGILFDNILIAKDEKVAETYRQTTWKPKFDV 407

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|297797139|ref|XP_002866454.1| calnexin 1 [Arabidopsis lyrata subsp. lyrata] gi|297312289|gb|EFH42713.1| calnexin 1 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|31321896|gb|AAK84429.1| putative papillar cell-specific calnexin [Brassica napus] Back     alignment and taxonomy information
>gi|224134230|ref|XP_002321768.1| predicted protein [Populus trichocarpa] gi|222868764|gb|EEF05895.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255540003|ref|XP_002511066.1| calnexin, putative [Ricinus communis] gi|223550181|gb|EEF51668.1| calnexin, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|297797141|ref|XP_002866455.1| hypothetical protein ARALYDRAFT_496347 [Arabidopsis lyrata subsp. lyrata] gi|297312290|gb|EFH42714.1| hypothetical protein ARALYDRAFT_496347 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|356527390|ref|XP_003532294.1| PREDICTED: calnexin homolog [Glycine max] Back     alignment and taxonomy information
>gi|351727521|ref|NP_001235116.1| calnexin homolog precursor [Glycine max] gi|3334138|sp|Q39817.1|CALX_SOYBN RecName: Full=Calnexin homolog; Flags: Precursor gi|669003|gb|AAA80588.1| calnexin [Glycine max] Back     alignment and taxonomy information
>gi|224119894|ref|XP_002318189.1| predicted protein [Populus trichocarpa] gi|118487874|gb|ABK95759.1| unknown [Populus trichocarpa] gi|222858862|gb|EEE96409.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356508884|ref|XP_003523183.1| PREDICTED: calnexin homolog [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query470
TAIR|locus:2159223530 CNX1 "calnexin 1" [Arabidopsis 0.838 0.743 0.738 1.3e-165
ASPGD|ASPL0000015815561 clxA [Emericella nidulans (tax 0.763 0.639 0.461 4.9e-85
UNIPROTKB|Q5R440592 CANX "Calnexin" [Pongo abelii 0.772 0.613 0.439 5.7e-84
UNIPROTKB|F1S441593 CANX "Uncharacterized protein" 0.772 0.612 0.442 9.3e-84
UNIPROTKB|B4DGP8627 CANX "cDNA FLJ55574, highly si 0.772 0.578 0.434 3.1e-83
UNIPROTKB|P27824592 CANX "Calnexin" [Homo sapiens 0.772 0.613 0.434 3.1e-83
MGI|MGI:88261591 Canx "calnexin" [Mus musculus 0.774 0.615 0.445 5e-83
UNIPROTKB|G4MTZ0577 MGG_01607 "Calnexin" [Magnapor 0.768 0.625 0.455 6.4e-83
UNIPROTKB|E1C2S5591 CANX "Uncharacterized protein" 0.772 0.614 0.449 1e-82
UNIPROTKB|E1C8M9582 CANX "Uncharacterized protein" 0.772 0.623 0.449 1e-82
TAIR|locus:2159223 CNX1 "calnexin 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1596 (566.9 bits), Expect = 1.3e-165, Sum P(2) = 1.3e-165
 Identities = 291/394 (73%), Positives = 322/394 (81%)

Query:    23 QLISASDDATILYESFDESFEGRWIVSQKDEYKGVWKHSKSEGHEDYGLLVGEPAKKYAI 82
             Q +   DD T+LYESFDE F+GRWIVS+  +Y+GVWKH+KSEGHEDYGLLV E A+KY I
Sbjct:    20 QKLCYCDDQTVLYESFDEPFDGRWIVSKNSDYEGVWKHAKSEGHEDYGLLVSEKARKYGI 79

Query:    83 VKELDEPLSLKDGTVVLQYEVRLQNGLECGGAYLKYLRPQEAGWVSKEFDNESPYMIMFG 142
             VKELDEPL+LK+GTVVLQYEVR Q GLECGGAYLKYLRPQEAGW  + FD+ESPY IMFG
Sbjct:    80 VKELDEPLNLKEGTVVLQYEVRFQEGLECGGAYLKYLRPQEAGWTPQGFDSESPYSIMFG 139

Query:   143 PDKCGATNKVHFILKHKNPKSGEYIEHHLKNPPSVPSDKLTHVYTAILKPDNELRILIDG 202
             PDKCG TNKVHFILKHKNPKSGEY+EHHLK PPSVP DKL+HVYTAILKPDNE+RIL+DG
Sbjct:   140 PDKCGGTNKVHFILKHKNPKSGEYVEHHLKFPPSVPYDKLSHVYTAILKPDNEVRILVDG 199

Query:   203 EEKQKANFLAADDFQPPLIXXXXXXXXXXXXXXXXXXRAKIPDPDAVKPEDWDEDAPMEI 262
             EEK+KAN L+ +DF+P LI                  RAKIPDP+AVKPEDWDEDAPMEI
Sbjct:   200 EEKKKANLLSGEDFEPALIPAKTIPDPEDKKPEDWDERAKIPDPNAVKPEDWDEDAPMEI 259

Query:   263 EDEDAVKPEGWLXXXXXXXXXXXATKPXXXXXXXXXXXXAPKIDNPKCEAAPGCGEWKRP 322
             EDE+A KPEGWL           ATKP            APKIDNPKCEAAPGCGEWKRP
Sbjct:   260 EDEEAEKPEGWLDDEPEEVDDPEATKPEDWDDEEDGMWEAPKIDNPKCEAAPGCGEWKRP 319

Query:   323 MKRNPAYKGKWHAPHIDNPNYKGIWKPQQIPNPNYFELDKPDFEPIAAVGIEIWTMQDGI 382
             MKRNPAYKGKW +P IDNP YKGIWKP+ IPNP+YFELD+PD+EPIAA+GIEIWTMQDGI
Sbjct:   320 MKRNPAYKGKWSSPLIDNPAYKGIWKPRDIPNPDYFELDRPDYEPIAAIGIEIWTMQDGI 379

Query:   383 LFDNILISKDEKVAESYRASAWKPKFDVEKEKLK 416
             LFDNILI+KDEKVAE+YR + WKPKFDVEKEK K
Sbjct:   380 LFDNILIAKDEKVAETYRQTTWKPKFDVEKEKQK 413
GO:0005509 "calcium ion binding" evidence=IEA
GO:0005783 "endoplasmic reticulum" evidence=IEA;IDA
GO:0006457 "protein folding" evidence=IEA;RCA
GO:0051082 "unfolded protein binding" evidence=IEA
GO:0005739 "mitochondrion" evidence=IDA
GO:0005773 "vacuole" evidence=IDA
GO:0009505 "plant-type cell wall" evidence=IDA
GO:0005774 "vacuolar membrane" evidence=IDA
GO:0005886 "plasma membrane" evidence=IDA
GO:0016020 "membrane" evidence=IDA
GO:0009507 "chloroplast" evidence=IDA
GO:0009506 "plasmodesma" evidence=IDA
GO:0005794 "Golgi apparatus" evidence=RCA
GO:0009408 "response to heat" evidence=RCA
GO:0009627 "systemic acquired resistance" evidence=RCA
GO:0009644 "response to high light intensity" evidence=RCA
GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA
GO:0042542 "response to hydrogen peroxide" evidence=RCA
GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA
ASPGD|ASPL0000015815 clxA [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
UNIPROTKB|Q5R440 CANX "Calnexin" [Pongo abelii (taxid:9601)] Back     alignment and assigned GO terms
UNIPROTKB|F1S441 CANX "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|B4DGP8 CANX "cDNA FLJ55574, highly similar to Calnexin" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|P27824 CANX "Calnexin" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:88261 Canx "calnexin" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|G4MTZ0 MGG_01607 "Calnexin" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms
UNIPROTKB|E1C2S5 CANX "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|E1C8M9 CANX "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P24643CALX_CANFANo assigned EC number0.50510.77440.6138yesno
Q5R440CALX_PONABNo assigned EC number0.50770.77440.6148yesno
Q39994CALX_HELTUNo assigned EC number0.78730.83190.7240N/Ano
P27824CALX_HUMANNo assigned EC number0.50250.77440.6148yesno
P35565CALX_RATNo assigned EC number0.51280.77870.6192yesno
P35564CALX_MOUSENo assigned EC number0.51530.77870.6192yesno
P29402CALX1_ARATHNo assigned EC number0.81210.86590.7679yesno
O82709CALX_PEANo assigned EC number0.76970.86800.7404N/Ano
Q6Q487CALX_ASPFUNo assigned EC number0.54810.77020.6429yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
CNX1
calnexin 1 (CNX1); calnexin 1 (CNX1); FUNCTIONS IN- unfolded protein binding, calcium ion binding; INVOLVED IN- protein folding; LOCATED IN- in 8 components; EXPRESSED IN- 26 plant structures; EXPRESSED DURING- 15 growth stages; CONTAINS InterPro DOMAIN/s- Calreticulin/calnexin, P (InterPro-IPR009033), Calreticulin/calnexin (InterPro-IPR001580), Calreticulin/calnexin, conserved site (InterPro-IPR018124), Concanavalin A-like lectin/glucanase (InterPro-IPR008985), Concanavalin A-like lectin/glucanase, subgroup (InterPro-IPR013320); BEST Arabidopsis thaliana protein match is- calnexin, pu [...] (530 aa)
(Arabidopsis thaliana)
Predicted Functional Partners:
AT1G09210
calreticulin 2 (CRT2); calreticulin 2 (CRT2); FUNCTIONS IN- unfolded protein binding, calcium i [...] (424 aa)
   • •••0.993
CRT1
CRT1 (CALRETICULIN 1); calcium ion binding / unfolded protein binding; Encodes calreticulin CRT [...] (425 aa)
   • •••0.993
BIP2
BIP2; ATP binding; luminal binding protein (BiP) ; Probably plays a role in facilitating the as [...] (668 aa)
   •  • 0.974
AT5G07340
calnexin, putative; calnexin, putative; FUNCTIONS IN- unfolded protein binding, calcium ion bin [...] (532 aa)
   • •••0.971
ATPDIL1-1
ATPDIL1-1 (PDI-LIKE 1-1); protein disulfide isomerase; Encodes a protein disulfide isomerase-li [...] (501 aa)
   •  • 0.968
SHD
SHD (SHEPHERD); ATP binding / unfolded protein binding; encodes an ortholog of GRP94, an ER-res [...] (823 aa)
   •  • 0.960
UNE5
UNE5 (UNFERTILIZED EMBRYO SAC 5); protein disulfide isomerase; Encodes a protein disulfide isom [...] (361 aa)
   •  • 0.939
ATPDIL1-2
ATPDIL1-2 (PDI-LIKE 1-2); protein disulfide isomerase; Encodes a protein disulfide isomerase-li [...] (508 aa)
   •  • 0.933
CRT3
CRT3 (CALRETICULIN 3); calcium ion binding / unfolded protein binding; Encodes calreticulin CRT [...] (424 aa)
   • •••0.909
SDF2
SDF2 (STROMAL CELL-DERIVED FACTOR 2-LIKE PROTEIN PRECURSOR); STROMAL CELL-DERIVED FACTOR 2-LIKE [...] (218 aa)
   •  • 0.901

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query470
pfam00262359 pfam00262, Calreticulin, Calreticulin family 1e-169
>gnl|CDD|215825 pfam00262, Calreticulin, Calreticulin family Back     alignment and domain information 
 Score =  479 bits (1236), Expect = e-169
 Identities = 206/365 (56%), Positives = 251/365 (68%), Gaps = 17/365 (4%)

Query: 34  LYESFD--ESFEGRWIVSQ-KDEYKGVWKHSKSEGH----EDYGLLVGEPAKKYAIVKEL 86
            +E FD  + +E RWI S+ K +  G WK    + +    +D GL+  + AK YAI  + 
Sbjct: 3   FFEQFDDDDLWEKRWIPSKAKKDDDGKWKVEAGKFYGGEEKDKGLVTKDDAKFYAISAKF 62

Query: 87  DEPLSLKDGTVVLQYEVRLQNGLECGGAYLKYLRPQEAGWVSKEFDNESPYMIMFGPDKC 146
            +P S K  T+V+QYEV+LQ G++CGGAY+K L         K+F  E+PY IMFGPD C
Sbjct: 63  PKPFSNKGKTLVVQYEVKLQQGIDCGGAYIKLLSKDFDQ---KDFSGETPYTIMFGPDIC 119

Query: 147 GATNK-VHFILKHKNPKSGEYIEHHLKNPPSVPSDKLTHVYTAILKPDNELRILIDGEEK 205
           G+  K VHFI +HK P +G   E HL   P    DKLTH+YT I++PDN   ILIDGE  
Sbjct: 120 GSDTKKVHFIFRHK-PITGYKEEKHLIKKPISRCDKLTHLYTLIIRPDNTFEILIDGEVV 178

Query: 206 QKANFLAADDFQPPLIPEKTIPDPDDKKPEDWDERAKIPDPDAVKPEDWDEDAPMEIEDE 265
           +  + L  +DF PP  P K IPDP DKKPEDWD+R KIPDP+A KPEDWDED P  I D 
Sbjct: 179 KSGSLL--EDFDPPFNPPKEIPDPTDKKPEDWDDREKIPDPEAKKPEDWDEDEPEFIPDP 236

Query: 266 DAVKPEGWLDDDPEEIDDPEATKPEDWDDEEDGEWEAPKIDNPKCEAAPGCGEWKRPMKR 325
           +AVKPEGWL+D+PE I DP+ATKPEDWDDEEDGEWEAP I NPKCE A GC   K PM +
Sbjct: 237 NAVKPEGWLEDEPEYIPDPDATKPEDWDDEEDGEWEAPMIPNPKCEKACGC--GKPPMIK 294

Query: 326 NPAYKGKWHAPHIDNPNYKGIWKPQQIPNPNYFELDKP-DFEPIAAVGIEIWTMQDGILF 384
           NP YKGKW  P IDNPNYKG+WKP++IPNP+YFE   P + EPI A+G E+W ++ GILF
Sbjct: 295 NPKYKGKWKPPMIDNPNYKGVWKPRKIPNPDYFEDPNPYNLEPIGAIGFELWQVKSGILF 354

Query: 385 DNILI 389
           DNILI
Sbjct: 355 DNILI 359

Length = 359

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 470
PF00262367 Calreticulin: Calreticulin family; InterPro: IPR00 100.0
KOG0675558 consensus Calnexin [Posttranslational modification 100.0
KOG0674406 consensus Calreticulin [Posttranslational modifica 100.0
PF00262367 Calreticulin: Calreticulin family; InterPro: IPR00 100.0
KOG0675558 consensus Calnexin [Posttranslational modification 100.0
KOG0674406 consensus Calreticulin [Posttranslational modifica 99.92
>PF00262 Calreticulin: Calreticulin family; InterPro: IPR001580 Synonym(s): Calregulin, CRP55, HACBP Calreticulin [] is a high-capacity calcium-binding protein which is present in most tissues and located at the periphery of the endoplasmic (ER) and the sarcoplamic reticulum (SR) membranes Back     alignment and domain information 
Probab=100.00  E-value=3e-140  Score=1072.34  Aligned_cols=352  Identities=59%  Similarity=1.159  Sum_probs=264.2

Q ss_pred             eeeecccCcc--cCCCceeccCC------CccceEEEeCCC----CCCCCceeecCcccceeeecccCCCccCCCCcEEE
Q 012115           32 TILYESFDES--FEGRWIVSQKD------EYKGVWKHSKSE----GHEDYGLLVGEPAKKYAIVKELDEPLSLKDGTVVL   99 (470)
Q Consensus        32 ~~F~E~Fd~~--w~~rWv~S~~~------~y~GkW~l~~~~----~~~D~GLv~~~~ak~yaIS~kl~kPf~~~~k~LVv   99 (470)
                      |||+|+|++.  |.+|||+|+++      +|.|+|+++++.    .++|+||||+++|||||||++|++||++++|+|||
T Consensus         1 v~F~E~F~~~~~~~~rWv~S~~~k~~~~~~y~G~W~~~~~~~~~~~~~DkGLv~~~~ak~yaIS~kl~kPf~~~~k~LVv   80 (367)
T PF00262_consen    1 VYFFETFDDGDDWKSRWVQSEAKKDDEIAKYDGKWELEAGKWYPGFEGDKGLVTKSDAKHYAISAKLDKPFSNKDKDLVV   80 (367)
T ss_dssp             EEEEE---SGGGGGGTEEE--SSST--------EEEEEB-SSTSSTTTTBEEEEESSSEEEEEEEEEEEEE-STTS-EEE
T ss_pred             CeEeEecCCCCcccCceeeCCCcCcCccccCceEEEEecccccCCCcCceeeEeccchhhhhhhhhCCCccccCCCcEEE
Confidence            6999999874  99999999766      569999999983    37899999999999999999999999999999999


Q ss_pred             EEEEEecCccccCCceeEecCCCCCCCccc-ccCCCCCeEEEEccCccCCCCeEEEEEecCCCCCCcccccccCCCCCC-
Q 012115          100 QYEVRLQNGLECGGAYLKYLRPQEAGWVSK-EFDNESPYMIMFGPDKCGATNKVHFILKHKNPKSGEYIEHHLKNPPSV-  177 (470)
Q Consensus       100 QYeVk~q~~idCGGaYIKLl~~~~~~~~~~-~f~~~tpY~IMFGPD~CG~~~kvh~i~~~~np~~g~~~e~~~~~~~~~-  177 (470)
                      |||||||++|+|||||||||+..   .++. +|+++|||+||||||+||++++|||||||+||+|++++|+|+++++.. 
T Consensus        81 QYeVK~q~~idCGGaYIKLL~~~---~~~~~~f~~~TpY~IMFGPD~CG~~~kvHfI~~~~nP~~~~~~e~~l~~~p~~~  157 (367)
T PF00262_consen   81 QYEVKFQQGIDCGGAYIKLLPAS---FDQEENFSDKTPYSIMFGPDKCGSSNKVHFIFRHKNPITGEIEEKHLKKPPISC  157 (367)
T ss_dssp             EEEEEETT--SEEE--EEEEBTT---SSGGGG-STTS-ESEEEEEEEESTTEEEEEEEEEE-TTTEETTEEEE-SSSSB-
T ss_pred             EEEEEeecceeccceEEEEecCc---cchhhhcCCCCCceEEeCCccCCCCceEEEEEEecCCCCCcccceecccCCccc
Confidence            99999999999999999999843   4555 999999999999999999999999999999999999999999999875 


Q ss_pred             CCCCCCceEEEEEecCCceEEEecCeeeccccccccCCCCCCCCCCCCCCCCCCCCCCCccccCccCCCCCCCCCCCCCC
Q 012115          178 PSDKLTHVYTAILKPDNELRILIDGEEKQKANFLAADDFQPPLIPEKTIPDPDDKKPEDWDERAKIPDPDAVKPEDWDED  257 (470)
Q Consensus       178 ~~D~~tHlYTLIi~pdntyei~IDg~~~~~G~L~~~~df~p~~~ppk~I~DP~d~KP~DWdd~~~I~Dp~~~KPeDWde~  257 (470)
                      .+|++||||||||+|||||||+|||+++++|||+  +||+|||+||++|+||+|+||+|||||++|+||+|+||+||||+
T Consensus       158 ~~D~~tHlYTLii~~dntyeI~IDg~~~~~G~L~--~df~Pp~~ppk~I~Dp~d~KP~DW~d~~~I~Dp~~~KPedWdE~  235 (367)
T PF00262_consen  158 FTDKLTHLYTLIIRPDNTYEIRIDGEVVKSGSLL--EDFDPPFNPPKEIDDPNDKKPEDWDDREKIPDPNAKKPEDWDED  235 (367)
T ss_dssp             HHSSSEEEEEEEEETTTEEEEEETTEEEEEEEHH--HHSE--ESS-SCEE-TTT--TTT-TTTSEEC-SSTT--TTTSSS
T ss_pred             ccCCCcceEEEEEcCCCeEEEEECCEEeeccccc--cccccCcCChhcccCccccCCcchhhhcccCCccccCccccccc
Confidence            5899999999999999999999999999999999  78999999999999999999999999999999999999999999


Q ss_pred             CCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCccCCCCCcCCCCCCccCCCCCCCCCCCCCCcCCc
Q 012115          258 APMEIEDEDAVKPEGWLDDDPEEIDDPEATKPEDWDDEEDGEWEAPKIDNPKCEAAPGCGEWKRPMKRNPAYKGKWHAPH  337 (470)
Q Consensus       258 ~p~~I~Dp~a~KP~dWde~ep~~I~DP~~~KPedWdd~~~G~w~~P~I~NP~~~~~~gcG~W~~P~I~NP~ykG~W~pp~  337 (470)
                      +|++|+||+|+||++|+|+||++|+||+|+||+|||+++||+|+||+|+||+|.. .|||+|++|||.||+|||+|+|||
T Consensus       236 ~p~~I~D~~a~kP~~W~edep~~IpDp~a~kP~dWdde~dGeWe~P~I~NP~C~~-~gCG~w~~p~i~Np~YkG~W~pp~  314 (367)
T PF00262_consen  236 EPEFIPDPDAVKPEGWLEDEPEYIPDPEAKKPEDWDDEEDGEWEAPMIPNPKCKE-PGCGEWKPPMIKNPNYKGKWKPPM  314 (367)
T ss_dssp             --SEEE-TT----SS-BSSS-SEEE-TT--S-TT--CCCCSS----EEE-CGGTT-S-BSS----EEE-TT--SS----E
T ss_pred             CcccccCccccCCcchhhCCCcccCCCCCCCCCCCCccccCCccCCccCCCcccC-CCccccccccccCccccCCccccc
Confidence            9999999999999999999999999999999999999999999999999999998 999999999999999999999999


Q ss_pred             cCCCCCCCCCCCCCCCCCCCCCCCCC-CCcccceeeEEEeEeecCceEeEEEE
Q 012115          338 IDNPNYKGIWKPQQIPNPNYFELDKP-DFEPIAAVGIEIWTMQDGILFDNILI  389 (470)
Q Consensus       338 I~NP~YkG~W~P~~I~NP~Y~~d~~p-~~~~i~~iGfElW~~~~g~~FDNI~i  389 (470)
                      |+||+|||+|+||+|+||+|+++.+| .+.+|++||||||||++|++||||||
T Consensus       315 I~NP~YkG~W~p~~I~NP~y~~d~~p~~~~~i~~ig~ElW~~~~~~~FDNi~i  367 (367)
T PF00262_consen  315 IPNPNYKGEWKPRKIPNPDYFEDPNPYNFEPIGAIGFELWQMSSGIIFDNILI  367 (367)
T ss_dssp             EE-TT---S----EEE-TT--SSTTTT--S-EEEEEEEEEESSS-EEEEEEEE
T ss_pred             cCCccccccccccccCCCcccCCCCccccCceeEEEEEEEeccCCceeeeEEC
Confidence            99999999999999999999999999 68999999999999999999999997

It probably plays a role in the storage of calcium in the lumen of the ER and SR and it may well have other important functions. Structurally, calreticulin is a protein of about 400 amino acid residues consisting of three domains: An N-terminal, probably globular, domain of about 180 amino acid residues (N-domain). A central domain of about 70 residues (P-domain) which contains three repeats of an acidic 17 amino acid motif. This region binds calcium with a low-capacity, but a high-affinity. A C-terminal domain rich in acidic residues and in lysine (C-domain). This region binds calcium with a high-capacity but a low-affinity. Calreticulin is evolutionarily related to several other calcium-binding proteins, including Onchocerca volvulus antigen RAL-1, calnexin [] and calmegin [].; GO: 0005509 calcium ion binding; PDB: 3POS_C 3DOW_B 3POW_A 1HHN_A 1K9C_A 1K91_A 3O0X_B 3O0W_A 3RG0_A 3O0V_A ....
>KOG0675 consensus Calnexin [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0674 consensus Calreticulin [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF00262 Calreticulin: Calreticulin family; InterPro: IPR001580 Synonym(s): Calregulin, CRP55, HACBP Calreticulin [] is a high-capacity calcium-binding protein which is present in most tissues and located at the periphery of the endoplasmic (ER) and the sarcoplamic reticulum (SR) membranes Back     alignment and domain information
>KOG0675 consensus Calnexin [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0674 consensus Calreticulin [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query470
1jhn_A424 Crystal Structure Of The Lumenal Domain Of Calnexin 5e-83
3rg0_A332 Structural And Functional Relationships Between The 1e-36
3o0v_A273 Crystal Structure Of The Calreticulin Lectin Domain 4e-18
3o0v_A273 Crystal Structure Of The Calreticulin Lectin Domain 8e-04
3o0w_A273 Structural Basis Of Carbohydrate Recognition By Cal 4e-17
3o0w_A273 Structural Basis Of Carbohydrate Recognition By Cal 8e-04
3pos_A265 Crystal Structure Of The Globular Domain Of Human C 1e-16
1hhn_A101 Calreticulin P-Domain Length = 101 2e-08
>pdb|1JHN|A Chain A, Crystal Structure Of The Lumenal Domain Of Calnexin Length = 424 Back     alignment and structure 
Iteration: 1

 Score =  304 bits (779), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 169/388 (43%), Positives = 223/388 (57%), Gaps = 24/388 (6%)
Query: 36  ESFDESFEGRWIVSQ--KDE-------YKGVW-----KHSKSEGHEDYGLLVGEPAKKYA 81
           +SFD      WI+S+  KD+       Y G W     K +K  G  D GL++   AK +A
Sbjct: 30  DSFDRGTLSGWILSKAKKDDTDDEIAKYDGKWEVDEMKETKLPG--DKGLVLMSRAKHHA 87
Query: 82  IVKELDEPLSLKDGTVVLQYEVRLQNGLECGGAYLKYLRPQEAGWVSKEFDNESPYMIMF 141
           I  +L++P       +++QYEV  QNG+ECGGAY+K L  +       +F +++PY IMF
Sbjct: 88  ISAKLNKPFLFDTKPLIVQYEVNFQNGIECGGAYVKLLS-KTPELNLDQFHDKTPYTIMF 146
Query: 142 GPDKCGATNKVHFILKHKNPKSGEYIEHHLKNP----PSVPSDKLTHVYTAILKPDNELR 197
           GPDKCG   K+HFI +HKNPK+G Y E H K P     +  +DK TH+YT IL PDN   
Sbjct: 147 GPDKCGEDYKLHFIFRHKNPKTGVYEEKHAKRPDADLKTYFTDKKTHLYTLILNPDNSFE 206
Query: 198 ILIDGEEKQKANFLAADDFQPPLIXXXXXXXXXXXXXXXXXXRAKIPDPDAVKPEDWDED 257
           IL+D       N L  +D  PP+                   R KIPDPDAVKP+DW+ED
Sbjct: 207 ILVDQSIVNSGNLL--NDMTPPVNPSREIEDPEDQKPEDWDERPKIPDPDAVKPDDWNED 264
Query: 258 APMEIEDEDAVKPEGWLXXXXXXXXXXXATKPXXXXXXXXXXXXAPKIDNPKCEAAPGCG 317
           AP +I DE+A KP+GWL           A KP            AP+I NPKCE+APGCG
Sbjct: 265 APAKIPDEEATKPDGWLDDEPEYVPDPDAEKPEDWDEDMDGEWEAPQIANPKCESAPGCG 324
Query: 318 EWKRPMKRNPAYKGKWHAPHIDNPNYKGIWKPQQIPNPNYFE-LDKPDFEPIAAVGIEIW 376
            W+RPM  NP YKGKW  P IDNPNY+GIWKP++IPNP++FE L+     P +A+G+E+W
Sbjct: 325 VWQRPMIDNPNYKGKWKPPMIDNPNYQGIWKPRKIPNPDFFEDLEPFKMTPFSAIGLELW 384
Query: 377 TMQDGILFDNILISKDEKVAESYRASAW 404
           +M   I FDN ++  D +V + +    W
Sbjct: 385 SMTSDIFFDNFIVCGDRRVVDDWANDGW 412
>pdb|3RG0|A Chain A, Structural And Functional Relationships Between The Lectin And Arm Domains Of Calreticulin Length = 332 Back     alignment and structure
>pdb|3O0V|A Chain A, Crystal Structure Of The Calreticulin Lectin Domain Length = 273 Back     alignment and structure
>pdb|3O0V|A Chain A, Crystal Structure Of The Calreticulin Lectin Domain Length = 273 Back     alignment and structure
>pdb|3O0W|A Chain A, Structural Basis Of Carbohydrate Recognition By Calreticulin Length = 273 Back     alignment and structure
>pdb|3O0W|A Chain A, Structural Basis Of Carbohydrate Recognition By Calreticulin Length = 273 Back     alignment and structure
>pdb|3POS|A Chain A, Crystal Structure Of The Globular Domain Of Human Calreticulin Length = 265 Back     alignment and structure
>pdb|1HHN|A Chain A, Calreticulin P-Domain Length = 101 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query470
1jhn_A424 Calnexin; jelly-roll, beta sandwich, chaperone; 2. 1e-151
3rg0_A332 Calreticulin; beta-sandwich, chaperone, monoglucos 8e-97
3pow_A265 Calreticulin; legume lectin fold, CNX/CRT family, 7e-60
3pow_A265 Calreticulin; legume lectin fold, CNX/CRT family, 2e-12
1hhn_A101 Calreticulin; molecular chaperone; NMR {Rattus nor 4e-35
3ici_C38 Calnexin, PP90; protein-protein complex, endoplasm 1e-15
>1jhn_A Calnexin; jelly-roll, beta sandwich, chaperone; 2.90A {Canis lupus familiaris} SCOP: b.29.1.12 b.104.1.1 Length = 424 Back     alignment and structure
 Score =  436 bits (1122), Expect = e-151
 Identities = 192/400 (48%), Positives = 257/400 (64%), Gaps = 20/400 (5%)

Query: 32  TILYESFDESFEGRWIVSQKDE---------YKGVWKHSKSEGH---EDYGLLVGEPAKK 79
               +SFD      WI+S+  +         Y G W+  + +      D GL++   AK 
Sbjct: 26  VYFADSFDRGTLSGWILSKAKKDDTDDEIAKYDGKWEVDEMKETKLPGDKGLVLMSRAKH 85

Query: 80  YAIVKELDEPLSLKDGTVVLQYEVRLQNGLECGGAYLKYLRPQEAGWVSKEFDNESPYMI 139
           +AI  +L++P       +++QYEV  QNG+ECGGAY+K L  +       +F +++PY I
Sbjct: 86  HAISAKLNKPFLFDTKPLIVQYEVNFQNGIECGGAYVKLL-SKTPELNLDQFHDKTPYTI 144

Query: 140 MFGPDKCGATNKVHFILKHKNPKSGEYIEHHLKNPP----SVPSDKLTHVYTAILKPDNE 195
           MFGPDKCG   K+HFI +HKNPK+G Y E H K P     +  +DK TH+YT IL PDN 
Sbjct: 145 MFGPDKCGEDYKLHFIFRHKNPKTGVYEEKHAKRPDADLKTYFTDKKTHLYTLILNPDNS 204

Query: 196 LRILIDGEEKQKANFLAADDFQPPLIPEKTIPDPDDKKPEDWDERAKIPDPDAVKPEDWD 255
             IL+D       N L  +D  PP+ P + I DP+D+KPEDWDER KIPDPDAVKP+DW+
Sbjct: 205 FEILVDQSIVNSGNLL--NDMTPPVNPSREIEDPEDQKPEDWDERPKIPDPDAVKPDDWN 262

Query: 256 EDAPMEIEDEDAVKPEGWLDDDPEEIDDPEATKPEDWDDEEDGEWEAPKIDNPKCEAAPG 315
           EDAP +I DE+A KP+GWLDD+PE + DP+A KPEDWD++ DGEWEAP+I NPKCE+APG
Sbjct: 263 EDAPAKIPDEEATKPDGWLDDEPEYVPDPDAEKPEDWDEDMDGEWEAPQIANPKCESAPG 322

Query: 316 CGEWKRPMKRNPAYKGKWHAPHIDNPNYKGIWKPQQIPNPNYFELDKP-DFEPIAAVGIE 374
           CG W+RPM  NP YKGKW  P IDNPNY+GIWKP++IPNP++FE  +P    P +A+G+E
Sbjct: 323 CGVWQRPMIDNPNYKGKWKPPMIDNPNYQGIWKPRKIPNPDFFEDLEPFKMTPFSAIGLE 382

Query: 375 IWTMQDGILFDNILISKDEKVAESYRASAWKPKFDVEKEK 414
           +W+M   I FDN ++  D +V + +    W  K   +   
Sbjct: 383 LWSMTSDIFFDNFIVCGDRRVVDDWANDGWGLKKAADGAA 422
>3rg0_A Calreticulin; beta-sandwich, chaperone, monoglucosylated proteins binding, carbohydrate binding, calcium binding, endoplasmic reticulu; 2.57A {Mus musculus} Length = 332 Back     alignment and structure
>3pow_A Calreticulin; legume lectin fold, CNX/CRT family, multi-functional, carboh binding, peptide binding, multi-compartmental, chaperone; 1.55A {Homo sapiens} PDB: 3pos_A 3o0w_A* 3o0v_A* 3o0x_A* Length = 265 Back     alignment and structure
>3pow_A Calreticulin; legume lectin fold, CNX/CRT family, multi-functional, carboh binding, peptide binding, multi-compartmental, chaperone; 1.55A {Homo sapiens} PDB: 3pos_A 3o0w_A* 3o0v_A* 3o0x_A* Length = 265 Back     alignment and structure
>1hhn_A Calreticulin; molecular chaperone; NMR {Rattus norvegicus} SCOP: b.104.1.1 PDB: 1k9c_A 1k91_A Length = 101 Back     alignment and structure
>3ici_C Calnexin, PP90; protein-protein complex, endoplasmic reticulum, glycoprotein isomerase, rotamase, chaperone, lectin, membrane; HET: MES; 1.70A {Canis lupus familiaris} Length = 38 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query470
1jhn_A424 Calnexin; jelly-roll, beta sandwich, chaperone; 2. 100.0
3rg0_A332 Calreticulin; beta-sandwich, chaperone, monoglucos 100.0
3pow_A265 Calreticulin; legume lectin fold, CNX/CRT family, 100.0
1jhn_A424 Calnexin; jelly-roll, beta sandwich, chaperone; 2. 100.0
1hhn_A101 Calreticulin; molecular chaperone; NMR {Rattus nor 100.0
1hhn_A101 Calreticulin; molecular chaperone; NMR {Rattus nor 99.92
3rg0_A332 Calreticulin; beta-sandwich, chaperone, monoglucos 99.63
3ici_C38 Calnexin, PP90; protein-protein complex, endoplasm 99.28
3ici_C38 Calnexin, PP90; protein-protein complex, endoplasm 98.06
>1jhn_A Calnexin; jelly-roll, beta sandwich, chaperone; 2.90A {Canis lupus familiaris} SCOP: b.29.1.12 b.104.1.1 Back     alignment and structure
Probab=100.00  E-value=1.4e-144  Score=1112.35  Aligned_cols=386  Identities=50%  Similarity=1.013  Sum_probs=357.1

Q ss_pred             cCCCcceeeecccCcccCCCceeccCC---------CccceEEEeCCCC---CCCCceeecCcccceeeecccCCCccCC
Q 012115           26 SASDDATILYESFDESFEGRWIVSQKD---------EYKGVWKHSKSEG---HEDYGLLVGEPAKKYAIVKELDEPLSLK   93 (470)
Q Consensus        26 ~~~~~~~~F~E~Fd~~w~~rWv~S~~~---------~y~GkW~l~~~~~---~~D~GLv~~~~ak~yaIS~kl~kPf~~~   93 (470)
                      ..+++++||+|+|+++|.+|||+|+++         +|.|+|+++++..   .+|+||||+++|||||||++|++||+|+
T Consensus        20 p~~~~~~~F~E~F~~~~~~rWv~S~~~k~~~~~~~~~y~G~w~~~~~~~~~~~~DkGL~~~~~ar~yaISa~~~kpf~~~   99 (424)
T 1jhn_A           20 PVPSGEVYFADSFDRGTLSGWILSKAKKDDTDDEIAKYDGKWEVDEMKETKLPGDKGLVLMSRAKHHAISAKLNKPFLFD   99 (424)
T ss_dssp             CCCCSCCSSEECCCSSSCCSCCCCCCC-----------CCEEECCBCTTCSSTTCBCCEEECSSCCCEEEEEEEEEECSS
T ss_pred             CCCCcceeEeeecCCCccCCceeCcccccccccccccCCeEEEEecCccCCCccccceeeccchhHHHHHHhhcCccccC
Confidence            345899999999999999999999986         5789999999853   7899999999999999999999999999


Q ss_pred             CCcEEEEEEEEecCccccCCceeEecCCCCCCCcccccCCCCCeEEEEccCccCCCCeEEEEEecCCCCCCcccccccCC
Q 012115           94 DGTVVLQYEVRLQNGLECGGAYLKYLRPQEAGWVSKEFDNESPYMIMFGPDKCGATNKVHFILKHKNPKSGEYIEHHLKN  173 (470)
Q Consensus        94 ~k~LVvQYeVk~q~~idCGGaYIKLl~~~~~~~~~~~f~~~tpY~IMFGPD~CG~~~kvh~i~~~~np~~g~~~e~~~~~  173 (470)
                      +|+||||||||||++|+|||||||||+.. .++++++|+++|||+||||||+||.++||||||+|+||+||+++|+|+++
T Consensus       100 ~k~LVvQYeVk~q~~idCGGaYiKLl~~~-~~~d~~~f~~~TpY~IMFGPD~CG~~~kvH~I~~~knp~~g~~~ekh~~~  178 (424)
T 1jhn_A          100 TKPLIVQYEVNFQNGIECGGAYVKLLSKT-PELNLDQFHDKTPYTIMFGPDKCGEDYKLHFIFRHKNPKTGVYEEKHAKR  178 (424)
T ss_dssp             SSCEEEEEEECCTTCCSEEECCEEEEBCC-SSCCGGGCCSSCCEEEEEEEEEESSCCEEEEEEEEECTTTCCEEEECCCC
T ss_pred             CCCEEEEEEEEecccccccceEEEeecCc-ccCCHhHcCCCCCceEeccCCccCCCCeEEEEEecCCCCCCchhhhcccC
Confidence            99999999999999999999999999743 35899999999999999999999999999999999999999999999998


Q ss_pred             CCC----CCCCCCCceEEEEEecCCceEEEecCeeeccccccccCCCCCCCCCCCCCCCCCCCCCCCccccCccCCCCCC
Q 012115          174 PPS----VPSDKLTHVYTAILKPDNELRILIDGEEKQKANFLAADDFQPPLIPEKTIPDPDDKKPEDWDERAKIPDPDAV  249 (470)
Q Consensus       174 ~~~----~~~D~~tHlYTLIi~pdntyei~IDg~~~~~G~L~~~~df~p~~~ppk~I~DP~d~KP~DWdd~~~I~Dp~~~  249 (470)
                      ++.    +++|++||||||||||||||||+|||+++.+|||+  +||+|||+||++|+||+|+||+|||++++|+||+|+
T Consensus       179 ~~~~~~~~~~D~~tHlYTLIl~pdntyei~ID~~~v~~GsL~--~D~~Pp~~pp~~I~Dp~~~KP~DWde~~~I~Dp~a~  256 (424)
T 1jhn_A          179 PDADLKTYFTDKKTHLYTLILNPDNSFEILVDQSIVNSGNLL--NDMTPPVNPSREIEDPEDQKPEDWDERPKIPDPDAV  256 (424)
T ss_dssp             CSSCCTHHHHSCSCEEEEEEEETTTEEEEEETTEEEEEEC---------CCSSCCCCBCTTCCCCTTCCCCSEEECSSCC
T ss_pred             CcccccccccCCCceEEEEEEcCCCcEEEEECCceecccccH--HhccccCCCcccccCccccCccccccccccCCcccC
Confidence            763    34799999999999999999999999999999999  899999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCccCCCCCcCCCCCCccCCCCCCCCCC
Q 012115          250 KPEDWDEDAPMEIEDEDAVKPEGWLDDDPEEIDDPEATKPEDWDDEEDGEWEAPKIDNPKCEAAPGCGEWKRPMKRNPAY  329 (470)
Q Consensus       250 KPeDWde~~p~~I~Dp~a~KP~dWde~ep~~I~DP~~~KPedWdd~~~G~w~~P~I~NP~~~~~~gcG~W~~P~I~NP~y  329 (470)
                      ||+|||+++|.+|+||+|+||+||+|+||++|+||+++||+||++++||+|++|+|+||+|++++|||+|++|||+||+|
T Consensus       257 KPeDWde~~p~~I~Dp~A~KPedWdd~ep~~I~DP~a~KPedWd~~~~G~W~~P~i~NP~~~~~~gcG~W~~P~I~NP~y  336 (424)
T 1jhn_A          257 KPDDWNEDAPAKIPDEEATKPDGWLDDEPEYVPDPDAEKPEDWDEDMDGEWEAPQIANPKCESAPGCGVWQRPMIDNPNY  336 (424)
T ss_dssp             CCTTCCSSCCSEEECTTCCCCSSCBSSSCSCCBCTTCCCCTTCCTTTSCCCCCCBCCCGGGTTSSCBSSCCCCEEECTTC
T ss_pred             CccccccCCccccCCccccCCCCccccccccCCCcccCCccccccCCCccccCcccCCchhcccccCCcccCCCCCCccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCcCCccCCCCCCCCCCCCCCCCCCCCCCCCC-CCcccceeeEEEeEeecCceEeEEEEeCCHHHHHHHHHhhcCCcc
Q 012115          330 KGKWHAPHIDNPNYKGIWKPQQIPNPNYFELDKP-DFEPIAAVGIEIWTMQDGILFDNILISKDEKVAESYRASAWKPKF  408 (470)
Q Consensus       330 kG~W~pp~I~NP~YkG~W~P~~I~NP~Y~~d~~p-~~~~i~~iGfElW~~~~g~~FDNI~i~~d~~~A~~~~~~t~~~k~  408 (470)
                      ||+|+||||+||+|+|+|+||+|+||+|+++.+| +|.+|++||||||||++|++|||||||+|+++|++++++||..|+
T Consensus       337 kG~W~pp~I~NP~Ykg~W~p~~I~NP~y~~d~~p~~~~~i~~iG~ElW~~~~g~~FDNilItdd~~~A~~~~~~t~~~k~  416 (424)
T 1jhn_A          337 KGKWKPPMIDNPNYQGIWKPRKIPNPDFFEDLEPFKMTPFSAIGLELWSMTSDIFFDNFIVCGDRRVVDDWANDGWGLKK  416 (424)
T ss_dssp             CCSCCCCEEECTTCCCSCCCCBCCCTTCCCCCCTTCCCCEEEEEECCCCSSSCCBCEEEEEESSSHHHHHHHHHTTTC--
T ss_pred             cCcccCCccCCCcccccccccccCCccccCCCcccccCcccEEEEEeEEeeCCcEEeeEEEcCCHHHHHHHHHhhhhhhh
Confidence            9999999999999999999999999999999999 799999999999999999999999999999999999999999999


Q ss_pred             hHHHHh
Q 012115          409 DVEKEK  414 (470)
Q Consensus       409 ~~e~~~  414 (470)
                      .+|.+.
T Consensus       417 ~~e~~~  422 (424)
T 1jhn_A          417 AADGAA  422 (424)
T ss_dssp             ------
T ss_pred             hhhhhc
Confidence            887543
>3rg0_A Calreticulin; beta-sandwich, chaperone, monoglucosylated proteins binding, carbohydrate binding, calcium binding, endoplasmic reticulu; 2.57A {Mus musculus} Back     alignment and structure
>3pow_A Calreticulin; legume lectin fold, CNX/CRT family, multi-functional, carboh binding, peptide binding, multi-compartmental, chaperone; 1.55A {Homo sapiens} PDB: 3pos_A 3o0w_A* 3o0v_A* 3o0x_A* Back     alignment and structure
>1jhn_A Calnexin; jelly-roll, beta sandwich, chaperone; 2.90A {Canis lupus familiaris} SCOP: b.29.1.12 b.104.1.1 Back     alignment and structure
>1hhn_A Calreticulin; molecular chaperone; NMR {Rattus norvegicus} SCOP: b.104.1.1 PDB: 1k9c_A 1k91_A Back     alignment and structure
>1hhn_A Calreticulin; molecular chaperone; NMR {Rattus norvegicus} SCOP: b.104.1.1 PDB: 1k9c_A 1k91_A Back     alignment and structure
>3rg0_A Calreticulin; beta-sandwich, chaperone, monoglucosylated proteins binding, carbohydrate binding, calcium binding, endoplasmic reticulu; 2.57A {Mus musculus} Back     alignment and structure
>3ici_C Calnexin, PP90; protein-protein complex, endoplasmic reticulum, glycoprotein isomerase, rotamase, chaperone, lectin, membrane; HET: MES; 1.70A {Canis lupus familiaris} Back     alignment and structure
>3ici_C Calnexin, PP90; protein-protein complex, endoplasmic reticulum, glycoprotein isomerase, rotamase, chaperone, lectin, membrane; HET: MES; 1.70A {Canis lupus familiaris} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 470
d1jhna4249 b.29.1.12 (A:61-262,A:412-458) Calnexin {Dog (Cani 1e-76
d1jhna4249 b.29.1.12 (A:61-262,A:412-458) Calnexin {Dog (Cani 1e-06
d1jhna4249 b.29.1.12 (A:61-262,A:412-458) Calnexin {Dog (Cani 0.001
d1jhna3142 b.104.1.1 (A:270-411) Calnexin {Dog (Canis familia 3e-68
d1k9ca_74 b.104.1.1 (A:) Calreticulin {Rat (Rattus norvegicu 8e-27
d1k91a_37 b.104.1.1 (A:) Calreticulin {Rat (Rattus norvegicu 1e-13
>d1jhna4 b.29.1.12 (A:61-262,A:412-458) Calnexin {Dog (Canis familiaris) [TaxId: 9615]} Length = 249 Back     information, alignment and structure

class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Calnexin/calreticulin
domain: Calnexin
species: Dog (Canis familiaris) [TaxId: 9615]

 Score =  237 bits (607), Expect = 1e-76
 Identities = 86/242 (35%), Positives = 120/242 (49%), Gaps = 22/242 (9%)

Query: 33  ILYESFDESFEGRWIVSQ--KDE-------YKGVWKH---SKSEGHEDYGLLVGEPAKKY 80
              +SFD      WI+S+  KD+       Y G W+     +++   D GL++   AK +
Sbjct: 11  YFADSFDRGTLSGWILSKAKKDDTDDEIAKYDGKWEVDEMKETKLPGDKGLVLMSRAKHH 70

Query: 81  AIVKELDEPLSLKDGTVVLQYEVRLQNGLECGGAYLKYLRPQEAGWVSKEFDNESPYMIM 140
           AI  +L++P       +++QYEV  QNG+ECGGAY+K L  +       +F +++PY IM
Sbjct: 71  AISAKLNKPFLFDTKPLIVQYEVNFQNGIECGGAYVKLL-SKTPELNLDQFHDKTPYTIM 129

Query: 141 FGPDKCGATNKVHFILKHKNPKSGEYIEHHLKNP----PSVPSDKLTHVYTAILKPDNEL 196
           FGPDKCG   K+HFI +HKNPK+G Y E H K P     +  +DK TH+YT IL PDN  
Sbjct: 130 FGPDKCGEDYKLHFIFRHKNPKTGVYEEKHAKRPDADLKTYFTDKKTHLYTLILNPDNSF 189

Query: 197 RILIDGEEKQKANFLAADDFQPPLIPEKTIPDPDDKKPEDWDERAKIPDPDAVKPEDWDE 256
            IL+D       N    + F+    P   I         D      I   D    +DW  
Sbjct: 190 EILVDQSIVNSGNL---EPFKMT--PFSAIGLELWSMTSDIFFDNFIVCGDRRVVDDWAN 244

Query: 257 DA 258
           D 
Sbjct: 245 DG 246
>d1jhna4 b.29.1.12 (A:61-262,A:412-458) Calnexin {Dog (Canis familiaris) [TaxId: 9615]} Length = 249 Back     information, alignment and structure
>d1jhna4 b.29.1.12 (A:61-262,A:412-458) Calnexin {Dog (Canis familiaris) [TaxId: 9615]} Length = 249 Back     information, alignment and structure
>d1jhna3 b.104.1.1 (A:270-411) Calnexin {Dog (Canis familiaris) [TaxId: 9615]} Length = 142 Back     information, alignment and structure
>d1k9ca_ b.104.1.1 (A:) Calreticulin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 74 Back     information, alignment and structure
>d1k91a_ b.104.1.1 (A:) Calreticulin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 37 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query470
d1jhna4249 Calnexin {Dog (Canis familiaris) [TaxId: 9615]} 100.0
d1jhna3142 Calnexin {Dog (Canis familiaris) [TaxId: 9615]} 100.0
d1jhna3142 Calnexin {Dog (Canis familiaris) [TaxId: 9615]} 100.0
d1k9ca_74 Calreticulin {Rat (Rattus norvegicus) [TaxId: 1011 99.94
d1k9ca_74 Calreticulin {Rat (Rattus norvegicus) [TaxId: 1011 99.9
d1k91a_37 Calreticulin {Rat (Rattus norvegicus) [TaxId: 1011 99.32
d1k91a_37 Calreticulin {Rat (Rattus norvegicus) [TaxId: 1011 98.27
d1jhna4249 Calnexin {Dog (Canis familiaris) [TaxId: 9615]} 97.5
>d1jhna4 b.29.1.12 (A:61-262,A:412-458) Calnexin {Dog (Canis familiaris) [TaxId: 9615]} Back     information, alignment and structure
class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Calnexin/calreticulin
domain: Calnexin
species: Dog (Canis familiaris) [TaxId: 9615]

Probab=100.00  E-value=4.1e-83  Score=621.73  Aligned_cols=227  Identities=37%  Similarity=0.634  Sum_probs=209.5

Q ss_pred             cCCCcceeeecccCcccCCCceeccCC---------CccceEEEeCCCC---CCCCceeecCcccceeeecccCCCccCC
Q 012115           26 SASDDATILYESFDESFEGRWIVSQKD---------EYKGVWKHSKSEG---HEDYGLLVGEPAKKYAIVKELDEPLSLK   93 (470)
Q Consensus        26 ~~~~~~~~F~E~Fd~~w~~rWv~S~~~---------~y~GkW~l~~~~~---~~D~GLv~~~~ak~yaIS~kl~kPf~~~   93 (470)
                      ..|++.+||+|+|+++|.+|||+|+++         +|.|+|.++++..   ++|+||||+++|||||||++|++||+++
T Consensus         4 p~~~~~v~F~E~Fd~~~~~rWi~S~akk~~~~~~~~~y~G~W~~~~~~~~~~~~DkGL~~~~~ak~yaIs~~l~~pf~~~   83 (249)
T d1jhna4           4 PVPSGEVYFADSFDRGTLSGWILSKAKKDDTDDEIAKYDGKWEVDEMKETKLPGDKGLVLMSRAKHHAISAKLNKPFLFD   83 (249)
T ss_dssp             CCCCSCCSSEECCCSSSCCSCCCCCCC-----------CCEEECCBCTTCSSTTCBCCEEECSSCCCEEEEEEEEEECSS
T ss_pred             CCCCcceeEEeccCCcccCCCEECcccccCcccceeeccceeeeecccccCCCCcccceecccchhhhhhccCCCCcccC
Confidence            457899999999999999999999985         6899999988653   7899999999999999999999999999


Q ss_pred             CCcEEEEEEEEecCccccCCceeEecCCCCCCCcccccCCCCCeEEEEccCccCCCCeEEEEEecCCCCCCcccccccCC
Q 012115           94 DGTVVLQYEVRLQNGLECGGAYLKYLRPQEAGWVSKEFDNESPYMIMFGPDKCGATNKVHFILKHKNPKSGEYIEHHLKN  173 (470)
Q Consensus        94 ~k~LVvQYeVk~q~~idCGGaYIKLl~~~~~~~~~~~f~~~tpY~IMFGPD~CG~~~kvh~i~~~~np~~g~~~e~~~~~  173 (470)
                      +|+||||||||+|++++|||||||||+.. .++++++|+++|||+||||||+||.++||||||+|+||++|+++|+|++.
T Consensus        84 ~k~LVvQYeVk~q~~~~CGGaYiKLl~~~-~~~~~~~f~~~TpY~IMFGPD~CG~~~kvHfIf~~~np~~~~~eek~~~~  162 (249)
T d1jhna4          84 TKPLIVQYEVNFQNGIECGGAYVKLLSKT-PELNLDQFHDKTPYTIMFGPDKCGEDYKLHFIFRHKNPKTGVYEEKHAKR  162 (249)
T ss_dssp             SSCEEEEEEECCTTCCSEEECCEEEEBCC-SSCCGGGCCSSCCEEEEEEEEEESSCCEEEEEEEEECTTTCCEEEECCCC
T ss_pred             CCCEEEEEEeeeccCccccceEEEeecCc-ccCCHhHcCCCCCceEEeCCcccCCCCEEEEEEEcCCCCCccceeeeecC
Confidence            99999999999999999999999999753 45789999999999999999999999999999999999999999999999


Q ss_pred             CCC----CCCCCCCceEEEEEecCCceEEEecCeeeccccccccCCCCCCCCCCCCCCCCCCCCCCCccccCccCCCCCC
Q 012115          174 PPS----VPSDKLTHVYTAILKPDNELRILIDGEEKQKANFLAADDFQPPLIPEKTIPDPDDKKPEDWDERAKIPDPDAV  249 (470)
Q Consensus       174 ~~~----~~~D~~tHlYTLIi~pdntyei~IDg~~~~~G~L~~~~df~p~~~ppk~I~DP~d~KP~DWdd~~~I~Dp~~~  249 (470)
                      |.+    +.+|++||||||||+|||||||+|||+++++|||+   +|.  +.|+++|+||+++||+||||+++|+||+++
T Consensus       163 p~~~~~~~~~D~~tHLYTLIi~pdntfeI~iDg~~~~~G~le---~~~--~~p~~~i~dp~~~KP~DW~d~~~I~dp~~~  237 (249)
T d1jhna4         163 PDADLKTYFTDKKTHLYTLILNPDNSFEILVDQSIVNSGNLE---PFK--MTPFSAIGLELWSMTSDIFFDNFIVCGDRR  237 (249)
T ss_dssp             CSSCCTHHHHSCSCEEEEEEEETTTEEEEEETTEEEEEECCC---TTC--CCCEEEEEECCCCSSSCCBCEEEEEESSSH
T ss_pred             CCccccccCcCCCcccceEEECCCCeEEEEeCCccccCCCcC---ccc--CCCcccCCCcccCCCCCccccccccCCCcC
Confidence            854    45799999999999999999999999999999987   243  668999999999999999999999999999


Q ss_pred             CCCCCCCCC
Q 012115          250 KPEDWDEDA  258 (470)
Q Consensus       250 KPeDWde~~  258 (470)
                      ||+|||++.
T Consensus       238 kpedWdedt  246 (249)
T d1jhna4         238 VVDDWANDG  246 (249)
T ss_dssp             HHHHHHHHT
T ss_pred             Chhhhhhhc
Confidence            999999864
>d1jhna3 b.104.1.1 (A:270-411) Calnexin {Dog (Canis familiaris) [TaxId: 9615]} Back     information, alignment and structure
>d1jhna3 b.104.1.1 (A:270-411) Calnexin {Dog (Canis familiaris) [TaxId: 9615]} Back     information, alignment and structure
>d1k9ca_ b.104.1.1 (A:) Calreticulin {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1k9ca_ b.104.1.1 (A:) Calreticulin {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1k91a_ b.104.1.1 (A:) Calreticulin {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1k91a_ b.104.1.1 (A:) Calreticulin {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1jhna4 b.29.1.12 (A:61-262,A:412-458) Calnexin {Dog (Canis familiaris) [TaxId: 9615]} Back     information, alignment and structure