Citrus Sinensis ID: 012121

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470
Protein Sequence
MLQFGQSACRGGGRKGGKPFRRGGRLVGRGRGHGAISNSTPSAAVPGQTSSSIPGQVPGAPTRPPPPMAWCELCRVDCNTLEILEQHKNGKRHKRNLRTHADLQNLNKCIAGQQNIQMPNSGSQPEVSQPEKVEECREKQPLESLPSQTLLGNASNETEMQKNTVDSVKEPQRKSRDQPDSRGCGSKRKMRGGRGGKYMRTNEGGPRRPIEPPKPKGVIPLICELCNVKCESQVVFDSHLVGKKHLANVKRFHGHRALYGEAALQSLYPASFNSLSSSVITQVQQGVNDPQVVLAQLLTYVLSQAQAQAQAPGLLAEQLRGLAAQIPGLVGMVAPAPAPGSSQETQYQHDFRTQRSMATTEEGSKNTVMVEAEDQQQSIATDLESPETVGIETKEKNASLPQDKKIISSLENPDNTASASKCEVASGGEAVQQQHGDDLVDSENEQDLELHNEEDAKEDTVEALQLQNNE
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEcccHHHHHHHHcccHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEccccccccccHHHHHHHHcHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHccccccHHHHHHHHHHHHHHHHHHHccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccHHHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccccccccccccccccEcccccccccccccccccccccccEEEEEEEEccccHHHHHHHHccHHHHHHHHHHHHHHHHcHcccccccccccccccccccccccccccccccccccccccccccccccccEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEEccEEcccHHHHHHHHccHHHHHHHHHHcccccccHHHHHHHcccccccccccccccccccccccccHHHHHHcHHHHHHcccccccccHHHHHHHccHHHccccccccccccccccccccccccccEEEEEEEcccccccccEEEEccccccccccccccccccccccccccEEccccccEcccccccccccccccEEEccccHHHHHHccccccccccccccHcccHHHcHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
mlqfgqsacrgggrkggkpfrrggrlvgrgrghgaisnstpsaavpgqtsssipgqvpgaptrppppmawcelcrvDCNTLEILEQHkngkrhkrnlrthaDLQNLNkciagqqniqmpnsgsqpevsqpekveecrekqpleslpsqtllgnasnetemQKNTvdsvkepqrksrdqpdsrgcgskrkmrggrggkymrtneggprrpieppkpkgvipLICElcnvkcesqvvfdshlvgkkHLANVKRFHGHRALYGEAalqslypasfnslSSSVITQVQQGVNDPQVVLAQLLTYVLSQAQAQAQAPGLLAEQLRGLAAqipglvgmvapapapgssqetqyqhdfrtqrsmatteegskntvMVEAEDQQqsiatdlespetvgietkeknaslpqdkkiisslenpdntasaskcevasggeavqqqhgddlvdseneqdlelhneedaKEDTVEALQLQNNE
Flexible Loop (DISEMBL)
mlqfgqsacrgggrkggkpfrrggrlvgrgrghgaisnstpsaavpgqtsssIPGQVPGAPTRPPPPMAWCELCRVDCNTLEILEqhkngkrhkrnlRTHADLQNLNKCIAGQQNIQMPNSGSQPEVSQPEKVEECRekqpleslpsqtllgnasnetemqkntvdsvkepqrksrdqpdsrgcgskrkmrggrggkymrtneggprrpieppkpkGVIPLICELCNVKCESQVVFDSHLVGKKHLANVKRFHGHRALYGEAALQSLYPASFNSLSSSVITQVQQGVNDPQVVLAQLLTYVLSQAQAQAQAPGLLAEQLRGLAAQIPGLVGMVAPAPAPGSSQETQYQHDFRTQRSMATTEEGSKNTVMVEAEDQQqsiatdlespetvgietkeknaslpqdKKIISSLENPDNTASASKCEVASGGEAVQQQHGDDLVDSENEQDLELhneedakedTVEALQLQNNE
Low Complexity Region (SEG)
MLQFGQSACrgggrkggkpfrrggrlvgrgrghgAISNSTPSAAVPGQTSSSIpgqvpgaptrppppMAWCELCRVDCNTLEILEQHKNGKRHKRNLRTHADLQNLNKCIAGQQNIQMPNSGSQPEVSQPEKVEECREKQPLESLPSQTLLGNASNETEMQKNTVDSVKEPQRKSRDQPDsrgcgskrkmrggrggkymrTNEGGPRRPIEPPKPKGVIPLICELCNVKCESQVVFDSHLVGKKHLANVKRFHGHRALYGEAALQSLYPASFNSLSSSVITQVQQGVNDPQVVLAQLLTYVLSqaqaqaqaPGLLAEQLRGLAAQIPGLVGMVAPAPAPGSSQETQYQHDFRTQRSMATTEEGSKNTVMVEAEDQQQSIATDLESPETVGIETKEKNASLPQDKKIISSLENPDNTASASKCEVASGGEAVQQQHGDDLVDSENEQDLELHNEEDAKEDTVEALQLQNNE
Disordered region (IsUnstruct)
*******************************************************************MAWCELCRVDCNTLEILEQ**********************CI**********************************************************************************************************GVIPLICELCNVKCESQVVFDSHLVGKKHLANVKRFHGHRALYGEAALQSLYPASFNSLSSSVITQVQQGVNDPQVVLAQLLTYVLSQAQAQAQAPGLLAEQLRGLAAQIPG**********************************************************************************************************************************************
Disordered Region (DISOPRED)
*********************************************************************WCELCRVDCNTLEI*****************************************************************************************************************************************LICELCNVKCESQVVFDSHLVGK******************************************************************************************************************************************************************************************************SENEQDLE*********************
Disordered Region (DISEMBL)
******************PFRRGGRLVGRGRGHGAIS************************TRPPPPMAWCELCRVDCNTLEILEQHKNGKRHKRNLRTHADLQNLNKCIAGQQNIQM*************************SLPSQTLLGNASNE*************************************GGKYMRTNEGGPRRPIEPPKPKGVIPLICELCNVKCESQVVFDSHLVGKKHLANVKRFHGHRALYGEAALQSLYPASFNSLSSSVITQVQQGVNDPQVVLAQLLTYVLSQAQAQAQAPGLLAEQLRGLAAQIPGLVGMVAPA***********QHDFRTQRSMATTEEGSKNTVMVEAEDQQQSIATDLESPETVGIETKEKNASLPQDKKIISSLE*****************************DSENEQDLELHNEEDAKEDTVEALQLQNNE
Disordered Region (DISPRO)
**********************************************************GAPTRPPPPMAWCELCRVDCNTLEILEQHKNGKRHKRNLRTHADLQNLNKCI******************************************************************************************************PKPKGVIPLICELCNVKCESQVVFDSHLVGKKHLANVKRFHGHRALYGEAALQSLYPASFNSLSSSVITQVQQGVNDPQVVLAQLLTYVLSQAQAQAQAPGLLAEQLRGLAAQIPGLVGMVA***************DFRTQRSMATTEEGSKNTVMVEAEDQQQSIATDLE**E*VGI*****NASLP*DKKIISSL*N********************************EQDL*LHNEEDAKEDTVEALQLQ***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLQFGQSACRGGGRKGGKPFRRGGRLVGRGRGHGAISNSTPSAAVPGQTSSSIPGQVPGAPTRPPPPMAWCELCRVDCNTLEILEQHKNGKRHKRNLRTHADLQNLNKCIAGQQNIQMPNSGSQPEVSQPEKVEECREKQPLESLPSQTLLGNASNETEMQKNTVDSVKEPQRKSRDQPDSRGCGSKRKMRGGRGGKYMRTNEGGPRRPIEPPKPKGVIPLICELCNVKCESQVVFDSHLVGKKHLANVKRFHGHRALYGEAALQSLYPASFNSLSSSVITQVQQGVNDPQVVLAQLLTYVLSQAQAQAQAPGLLAEQLRGLAAQIPGLVGMVAPAPAPGSSQETQYQHDFRTQRSMATTEEGSKNTVMVEAEDQQQSIATDLESPETVGIETKEKNASLPQDKKIISSLENPDNTASASKCEVASGGEAVQQQHGDDLVDSENEQDLELHNEEDAKEDTVEALQLQNNE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	470
297734533	679	unnamed protein product [Vitis vinifera]	0.710	0.491	0.465	4e-60
147819081	628	hypothetical protein VITISV_000640 [Viti	0.655	0.490	0.480	3e-58
255576046	725	conserved hypothetical protein [Ricinus	0.538	0.348	0.430	7e-47
356495137	446	PREDICTED: uncharacterized protein LOC10	0.6	0.632	0.429	1e-43
147812148	618	hypothetical protein VITISV_009309 [Viti	0.534	0.406	0.411	1e-42
413955253	396	hypothetical protein ZEAMMB73_384238 [Ze	0.440	0.522	0.299	5e-18
226491021	396	uncharacterized protein LOC100272823 [Ze	0.440	0.522	0.299	6e-18
224141481	289	predicted protein [Populus trichocarpa]	0.278	0.453	0.287	1e-09
225457301	424	PREDICTED: uncharacterized protein LOC10	0.361	0.400	0.288	4e-09
388501728	173	unknown [Medicago truncatula]	0.210	0.572	0.433	3e-08

>gi|297734533|emb|CBI16584.3| unnamed protein product [Vitis vinifera]

 Score =  238 bits (608), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 175/376 (46%), Positives = 226/376 (60%), Gaps = 42/376 (11%)

Query: 59  GAPTRPPPPMAWCELCRVDCNTLEILEQHKNGKRHKRNLRTHADLQNLNKCIAGQQNIQM 118
           G P    P MAWCELCRVDCNTLEILEQHKNGKRHK+NL  + +LQNLNK I G QN QM
Sbjct: 111 GNPFWRSPCMAWCELCRVDCNTLEILEQHKNGKRHKKNLLVYQELQNLNKLITGVQNEQM 170

Query: 119 PNSGSQPEVSQPEKVEECREKQPLESLPSQTLLGNASN---ETEMQKNTVDS--VKEPQR 173
           P S  +P++ Q E+V    +KQ     PSQ    N +    +TE +K+ V +   +E +R
Sbjct: 171 PISDFKPQLIQSERVGGSEDKQ-----PSQGTGANGTEKEQQTEAEKSEVSAQPTEEQER 225

Query: 174 KSR-DQPDSRGCGSKRKMRGGRGGKYMRTNEGGPRRPIEPPKPKGVIPLICELCNVKCES 232
           K+R D   + G G KRKMRGGRGGK MR          EPPKPK +IPLICELCNVKCES
Sbjct: 226 KARMDHFQAPGRGLKRKMRGGRGGKRMRQ--------FEPPKPKEMIPLICELCNVKCES 277

Query: 233 QVVFDSHLVGKKHLANVKRFHGHRALYGEAALQSLYPASFNSLSSSVITQV-QQGVNDPQ 291
           QVVFDSHL GKKH +N+KRFHG++A+    ALQ+L P++ N+ S+  I QV QQGV+  Q
Sbjct: 278 QVVFDSHLAGKKHHSNLKRFHGYQAIIA-GALQALIPSNPNAPSNFFIPQVHQQGVSGSQ 336

Query: 292 VVLAQLLTYVLSQAQAQAQAPGLLAEQLRGLAAQIPGLVGMVAPAPAPGSSQETQYQHDF 351
            + AQ + Y + Q QA   APG  +E                 P PAP S+ ETQ +   
Sbjct: 337 GLPAQPMPY-MQQGQAPGMAPGPASE-----------------PEPAPVSALETQDKEGT 378

Query: 352 RTQRSMATTEEGSKNTVMVEAEDQQQS--IATDLESPETVGIETKEKNASLPQDKKIISS 409
           +T  S AT+E G +NTV  EA  Q Q   IA++  S  +       + ++  + K +I  
Sbjct: 379 KTVESQATSEAGGQNTVTAEANSQLQPDIIASEASSGVSTNTTIVSETSAF-EGKDVIPP 437

Query: 410 LENPDNTASASKCEVA 425
           +++PD   S +K + A
Sbjct: 438 IDDPDVAPSENKVKGA 453

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147819081|emb|CAN65350.1| hypothetical protein VITISV_000640 [Vitis vinifera]

 Score =  232 bits (592), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 162/337 (48%), Positives = 200/337 (59%), Gaps = 29/337 (8%)

Query: 59  GAPTRPPPPMAWCELCRVDCNTLEILEQHKNGKRHKRNLRTHADLQNLNKCIAGQQNIQM 118
           G P    P MAWCELCRVDCNTLEILEQHKNGKRHK+NL  + +LQNLNK I G QN QM
Sbjct: 269 GNPFWRSPCMAWCELCRVDCNTLEILEQHKNGKRHKKNLLVYQELQNLNKLITGVQNEQM 328

Query: 119 PNSGSQPEVSQPEKVEECREKQPLESLPSQTLLGNASNETEMQKNTVDSVKEPQRKSR-D 177
           P S  +P++ Q E+V    + QP +   +         E E  + +    +E +RK+R D
Sbjct: 329 PISDFKPQLIQSERVGGSEDXQPSQGTGANGTEKEQQTEAEKSEVSAQPTEEQERKARMD 388

Query: 178 QPDSRGCGSKRKMRGGRGGKYMRTNEGGPRRPIEPPKPKGVIPLICELCNVKCESQVVFD 237
              + G G KRKMRGGRGGK MR          EPPKPK +IPLICELCNVKCESQVVFD
Sbjct: 389 HFQAPGRGLKRKMRGGRGGKRMRQ--------FEPPKPKEMIPLICELCNVKCESQVVFD 440

Query: 238 SHLVGKKHLANVKRFHGHRALYGEAALQSLYPASFNSLSSSVITQV-QQGVNDPQVVLAQ 296
           SHL GKKH +N+KRFHG++A+    ALQ+L P++ N+ S+  I QV QQGV+  Q + AQ
Sbjct: 441 SHLAGKKHHSNLKRFHGYQAIIA-GALQALIPSNPNAPSNFFIPQVHQQGVSGSQGLPAQ 499

Query: 297 LLTYVLSQAQAQAQAPGLLAEQLRGLAAQIPGLVGMVAPAPAPGSSQETQYQHDFRTQRS 356
            +   + Q QA   APGL +E                 P PAP S+ ETQ +   +T  S
Sbjct: 500 PMP-XMQQGQAPGMAPGLASE-----------------PEPAPVSALETQDKEGTKTVES 541

Query: 357 MATTEEGSKNTVMVEAEDQQQSIATDLESPETVGIET 393
            AT+E G +NTV  EA  Q Q      E+   V   T
Sbjct: 542 QATSEAGGQNTVTAEANSQLQPXXIASEAXSGVSTNT 578

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255576046|ref|XP_002528918.1| conserved hypothetical protein [Ricinus communis] gi|223531620|gb|EEF33447.1| conserved hypothetical protein [Ricinus communis]

 Score =  194 bits (494), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 120/279 (43%), Positives = 162/279 (58%), Gaps = 26/279 (9%)

Query: 10  RGGGRKGGKPFRRGGRLVGRGRGHGAISNST---PSAA------VPGQTSSSIPGQVPGA 60
           RG G   GK   R      R + HGA S S+   PSAA      V  + + S P     A
Sbjct: 385 RGRGHGKGKAHSR------RFKPHGAASTSSYPEPSAANEDPAAVAVEAAQSAPAPEKLA 438

Query: 61  PTRPPPPMAWCELCRVDCNTLEILEQHKNGKRHKRNLRTHADLQNLNKCIAGQQNIQMPN 120
           P   P  +AWCELCRVDC ++E+LEQHKNGKRHK+NL    +L+   K     +N Q   
Sbjct: 439 PKHQPAQIAWCELCRVDCTSVEVLEQHKNGKRHKKNLLRIEELKKAVKFGEEIKNDQETI 498

Query: 121 SGSQPEVSQ-PEKVEECREKQPLESLPSQTLLGNASNETEMQKNTVDSVKEPQRKSRDQP 179
             ++PE  Q P+  ++  E++  E+L  +          ++Q NT +  + P  +  DQ 
Sbjct: 499 INTKPEDYQEPQVAQDGEEQKTAENLTVEATNDEHIMVRDLQDNTGEKSEVPVEELSDQQ 558

Query: 180 ---------DSRGCGSKRKMRGGRGGKYMRTNEGGPRRPIEPPKPKGVIPLICELCNVKC 230
                    D+R  G KRK++GGRGGK M+T+E   RRP+EPPKPK V+PLIC+LCNVKC
Sbjct: 559 GMKPKMNLFDNRRRGMKRKIKGGRGGKRMKTSETH-RRPVEPPKPKVVVPLICDLCNVKC 617

Query: 231 ESQVVFDSHLVGKKHLANVKRFHGHRALYGEAALQSLYP 269
           +++ V D HL GKKH+A +KRF GH+A+YG   LQ+LYP
Sbjct: 618 DTREVLDRHLSGKKHIAKLKRFEGHQAIYGPTGLQALYP 656

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356495137|ref|XP_003516437.1| PREDICTED: uncharacterized protein LOC100794880 [Glycine max]

 Score =  183 bits (465), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 132/307 (42%), Positives = 187/307 (60%), Gaps = 25/307 (8%)

Query: 45  VPGQTSSSIPGQVPGAPTRPPPP-MAWCELCRVDCNTLEILEQHKNGKRHKRNLRTHADL 103
           +P  +S  +   VP     P PP    CE+C+V+CN+ EILEQHK GK+H++N+R H +L
Sbjct: 118 IPFHSSGPVVSNVPARVQPPVPPRKVCCEICKVECNSPEILEQHKVGKKHQKNMRVHEEL 177

Query: 104 QNLNKCIAGQQNIQMPNSGSQPEVSQPEKVEECREK-QPLESLPSQTLLGNASNETEMQK 162
           Q  N  I  QQ+ ++P S       QP++V+E  +   P E++ S  ++ N   E ++Q 
Sbjct: 178 QRRN-AINEQQSGEIPTSQLN-LTDQPKEVQESEKNGHPTENMGSGVIINNHEEEIQLQN 235

Query: 163 NTVDSVKE-----PQRKSRDQPDSRGCGSKRKMRGGRGGKYMRTNEGGPRRPIEPPKPKG 217
           N V ++ E     P+ K+ D   +RG G KRK +GG+GGKYMRTN+G   +P+EP +   
Sbjct: 236 N-VGNMSEVPAEVPEGKTVDNSAARGRGLKRKKKGGKGGKYMRTNDGS--KPVEPAQ--- 289

Query: 218 VIPLICELCNVKCESQVVFDSHLVGKKHLANVKRFHG----HRALYGE-AALQSLYPASF 272
            +   CELC+VKCESQVV+ SH+ GKKHL+ ++R        +AL G  + LQ++YP   
Sbjct: 290 TMSFRCELCDVKCESQVVYQSHMTGKKHLSKLRRASSGVGQQQALSGALSGLQAVYPPDI 349

Query: 273 NSLSSSVITQVQQGVNDPQVVLAQLLTYVLSQAQAQAQAPGLLAEQLRGLAAQIPGLVGM 332
           N+LS+++  QVQQG NDPQV+LAQLL  VLSQAQ  A AP   A     +A+QIP    M
Sbjct: 350 NALSNAINAQVQQGDNDPQVLLAQLLMTVLSQAQVPATAPVTGA-----IASQIPAPTSM 404

Query: 333 VAPAPAP 339
             P+  P
Sbjct: 405 AGPSYEP 411

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147812148|emb|CAN77034.1| hypothetical protein VITISV_009309 [Vitis vinifera]

 Score =  180 bits (457), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 116/282 (41%), Positives = 158/282 (56%), Gaps = 31/282 (10%)

Query: 30  GRGHGAISNSTPSAAVPGQTSSSIPGQVPGAPTRPPPPMAWCELCRVDCNTLEILEQHKN 89
           G   G +   +  A V  +TS S       AP   P  +AWCELCRVDC +LEILEQHKN
Sbjct: 81  GEPSGVLPEESGEAVVLAETSPSTVAPGDSAPNWQPSQVAWCELCRVDCTSLEILEQHKN 140

Query: 90  GKRHKRNLRTHADLQNLNKCIAGQQNIQMPNSGSQPEVSQPEKVEECREK--QPLESLPS 147
           GKRHK+NL+   +L++ N       N  +  S  QPE++Q  + E   E    P ++LPS
Sbjct: 141 GKRHKKNLQRIEELKSANLTGTEIPNEPVGESKFQPEIAQEGEEESDEEGEENPEKNLPS 200

Query: 148 QTLLGNASNETEM---QKNTVDSVKEPQRKSRDQPDSRGCGSKRKMRGGRGGKYMRTNEG 204
           + +    +NE EM   QKN  D V++P++   ++PDS+    K +M      ++      
Sbjct: 201 EAI----ANENEMVGEQKN--DIVEQPEKPMEERPDSQV--GKPRMEHFDNWRHGMKRRM 252

Query: 205 -------------GPRRPIEPPKPKGVIPLICELCNVKCESQVVFDSHLVGKKHLANVKR 251
                         PRR IEPPKPK VIPLIC+LCNVKC++Q VFD HL GKKH+A +KR
Sbjct: 253 RGGRGGKRMKMFEAPRRSIEPPKPKVVIPLICDLCNVKCDTQEVFDRHLSGKKHIAKLKR 312

Query: 252 FHGHRALYGEAALQSLYPASFNSLSSSVIT---QVQQGVNDP 290
           F GH+A+YG   LQ+LYP   N ++ +++      QQG   P
Sbjct: 313 FEGHQAMYGPMGLQALYPP--NPIAQTLLHPQGHQQQGFYSP 352

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|413955253|gb|AFW87902.1| hypothetical protein ZEAMMB73_384238 [Zea mays]

 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 83/277 (29%), Positives = 120/277 (43%), Gaps = 70/277 (25%)

Query: 41  PSAAVPGQTSSSIPGQVPGAPTRPPPPMAWCELCRVDCNTLEILEQHKNGKRHKRNLRTH 100
           P+  V   TSSS  G V         P AWC++C V CN+ EILEQHKNGKRHKR+++  
Sbjct: 59  PAHMVQATTSSSTRGTVV--------PAAWCDICHVGCNSKEILEQHKNGKRHKRSVQRM 110

Query: 101 ADLQNLNKCIAGQQNIQMPNSGSQPEVS------------------------QPEKVEEC 136
            D+  L        ++  P+S    EV                          PE V   
Sbjct: 111 QDMARLQGTTPAIADMGAPSSSQLAEVEGPSRSVHMVPPLGSTSLSGEHKDLAPENVGAS 170

Query: 137 REKQPLESLPSQTLLGNASNETEMQKNTVDSVKE---------PQRKSRD----QPDSRG 183
                +  +P  +   N ++ T    + V++  E         P  + +D     P++ G
Sbjct: 171 VYGVQITEVPGSSSKQNKTHHTSTVGHGVEAQVELHVAVQACQPSNEMKDGGEAPPNATG 230

Query: 184 -----------------CGSKRKMRG-GRGGKYMRTNEGGPRRPIEPPKPKGVI--PLIC 223
                             GSKRK  G GRG K +R ++   +R     +P+ V   PL+C
Sbjct: 231 PSNAQLVEARMGVNGNNNGSKRKPTGAGRGRKKLRVSQAPQQR-----RPERVREQPLVC 285

Query: 224 ELCNVKCESQVVFDSHLVGKKHLANVKRFHGHRALYG 260
            +CN  C+++ VFD HLVGKKH + +KR  G   L+G
Sbjct: 286 TICNAICDTRAVFDIHLVGKKHQSRLKRSQGPDVLFG 322

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|226491021|ref|NP_001140748.1| uncharacterized protein LOC100272823 [Zea mays] gi|194700900|gb|ACF84534.1| unknown [Zea mays]

 Score = 98.6 bits (244), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 83/277 (29%), Positives = 120/277 (43%), Gaps = 70/277 (25%)

Query: 41  PSAAVPGQTSSSIPGQVPGAPTRPPPPMAWCELCRVDCNTLEILEQHKNGKRHKRNLRTH 100
           P+  V   TSSS  G V         P AWC++C V CN+ EILEQHKNGKRHKR+++  
Sbjct: 59  PAHMVQATTSSSTRGTVV--------PAAWCDICHVGCNSKEILEQHKNGKRHKRSVQRM 110

Query: 101 ADLQNLNKCIAGQQNIQMPNSGSQPEVS------------------------QPEKVEEC 136
            D+  L        ++  P+S    EV                          PE V   
Sbjct: 111 QDMARLQGTTPAIADMGAPSSSQLAEVEGPSRSVHMVPPLGSTSLSGEHKDLAPENVGAS 170

Query: 137 REKQPLESLPSQTLLGNASNETEMQKNTVDSVKE---------PQRKSRD----QPDSRG 183
                +  +P  +   N ++ T    + V++  E         P  + +D     P++ G
Sbjct: 171 VYGVQITEVPGSSSKQNKTHHTSTVGHGVEAQVELHVAVQACQPSNEMKDGGEAPPNATG 230

Query: 184 -----------------CGSKRKMRG-GRGGKYMRTNEGGPRRPIEPPKPKGVI--PLIC 223
                             GSKRK  G GRG K +R ++   +R     +P+ V   PL+C
Sbjct: 231 PSNAQLVEARMGVNGNNNGSKRKPTGAGRGRKKLRVSQAPQQR-----RPERVREQPLVC 285

Query: 224 ELCNVKCESQVVFDSHLVGKKHLANVKRFHGHRALYG 260
            +CN  C+++ VFD HLVGKKH + +KR  G   L+G
Sbjct: 286 TICNAICDTRAVFDIHLVGKKHQSRLKRSQGPDVLFG 322

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224141481|ref|XP_002324100.1| predicted protein [Populus trichocarpa] gi|222867102|gb|EEF04233.1| predicted protein [Populus trichocarpa]

 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 54/188 (28%), Positives = 83/188 (44%), Gaps = 57/188 (30%)

Query: 69  AWCELCRVDCNTLEILEQHKNGKRHKRNLRTHADLQNLNKCIAGQQNIQMPNSGSQPEVS 128
           A+CE+C+VDCN+ ++L+QHK GK+HK+N      L+ L    AG       ++GS   V 
Sbjct: 154 AYCEVCKVDCNSKDVLDQHKLGKKHKKN------LEKLQAAAAGCS----VSAGSNNPVI 203

Query: 129 QPEKVEECREKQPLESLPSQTLLGNASNETEMQKNTVDSVKEPQRKSRDQPDSRGCGSKR 188
            P++             PS++  GN     + +K   + +++   K R           R
Sbjct: 204 GPQEN------------PSKSENGNGQ---KSKKKAAEPLEDLDSKRR-----------R 237

Query: 189 KMRGGRGGKYMRTNEGGPRRPIEPPKPKGVIPLICELCNVKCESQVVFDSHLVGKKHLAN 248
            + GG     +R                     +C  CNV C S  VF+SHL G+KH A 
Sbjct: 238 ILEGGAAADAVR---------------------VCSFCNVVCNSDTVFNSHLAGQKHAAM 276

Query: 249 VKRFHGHR 256
           +K+  G R
Sbjct: 277 LKKLAGIR 284

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225457301|ref|XP_002281421.1| PREDICTED: uncharacterized protein LOC100251937 [Vitis vinifera] gi|297733915|emb|CBI15162.3| unnamed protein product [Vitis vinifera]

 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 56/194 (28%), Positives = 89/194 (45%), Gaps = 24/194 (12%)

Query: 71  CELCRVDCNTLEILEQHKNGKRHKRNLRTHADLQNLNKCIAGQQNIQMPNSGSQPEVSQP 130
           CE+C +DCN+ ++LE+H +GK+H RNL+ H +   ++  I+ + +I M N+GS   V Q 
Sbjct: 132 CEVCNIDCNSKDVLEKHISGKKHNRNLQIHTN--QVSTTISTKDSIGM-NTGSL--VGQI 186

Query: 131 EKVEECREKQPLESLPSQTLLGNASNETEMQKNTVDSVKEPQRKSRDQPDSRGCGSKRKM 190
             +   R      +   Q+L+       E      DSV+           +  C S+   
Sbjct: 187 GSISHQRILGSAGAAAGQSLVAKRLKLVE-GGAVADSVRTCTI------CNVACNSQVVF 239

Query: 191 RGGRGGKYMRTNEG-GPRRPI-----------EPPKPKGVIPLICELCNVKCESQVVFDS 238
           +    GK      G  P+  +            P KPK V    CE+C + C S  VF  
Sbjct: 240 QKHLTGKKHAAQVGLRPQHLVVQPHSNGIWSKAPKKPKFVQSAWCEVCKINCNSSDVFTK 299

Query: 239 HLVGKKHLANVKRF 252
           H++GKKHL N+++ 
Sbjct: 300 HILGKKHLKNLEKL 313

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388501728|gb|AFK38930.1| unknown [Medicago truncatula]

 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 49/113 (43%), Positives = 60/113 (53%), Gaps = 14/113 (12%)

Query: 254 GHRALYGEAALQSLYPASFNSLSSSVITQVQQGVNDPQVVLAQLLTYVLSQAQAQAQAPG 313
           G +AL G A LQ+LYP   N+L++++  QVQQG NDPQV+LAQLL   LSQAQ       
Sbjct: 39  GPQALPGAAGLQALYPPDINALATAINAQVQQGDNDPQVLLAQLLVNALSQAQGSTT--- 95

Query: 314 LLAEQLRGLAAQIPGLVGMVAPAPAPGSSQETQYQHDFRTQRSMATTEEGSKN 366
             A     LAAQ P      APA   GS  + Q     +TQ S    + G  N
Sbjct: 96  --AAPNGTLAAQTP------APASVAGSGNDPQL---VQTQVSEVAADVGVGN 137

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

No hits with e-value below 0.001 by BLAST

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00009596001 SubName- Full=Chromosome chr2 scaffold_241, whole genome shotgun sequence; (446 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	470
pfam12874	25	pfam12874, zf-met, Zinc-finger of C2H2 type	2e-07
smart00451	35	smart00451, ZnF_U1, U1-like zinc finger	9e-07
pfam12874	25	pfam12874, zf-met, Zinc-finger of C2H2 type	1e-04
smart00451	35	smart00451, ZnF_U1, U1-like zinc finger	2e-04
pfam12171	27	pfam12171, zf-C2H2_jaz, Zinc-finger double-strande	0.002

>gnl|CDD|205121 pfam12874, zf-met, Zinc-finger of C2H2 type

 Score = 46.3 bits (111), Expect = 2e-07
 Identities = 14/25 (56%), Positives = 15/25 (60%)

Query: 221 LICELCNVKCESQVVFDSHLVGKKH 245
             CELCNV   S+    SHL GKKH
Sbjct: 1   FYCELCNVTFTSESQLKSHLRGKKH 25

This is a zinc-finger domain with the CxxCx(12)Hx(6)H motif, found in multiple copies in a wide range of proteins from plants to metazoans. Some member proteins, particularly those from plants, are annotated as being RNA-binding. Length = 25

>gnl|CDD|197732 smart00451, ZnF_U1, U1-like zinc finger

 Score = 44.9 bits (107), Expect = 9e-07
 Identities = 14/30 (46%), Positives = 20/30 (66%)

Query: 223 CELCNVKCESQVVFDSHLVGKKHLANVKRF 252
           C+LCNV    ++  ++HL GKKH  NVK+ 
Sbjct: 6   CKLCNVTFTDEISVEAHLKGKKHKKNVKKR 35

Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins. Length = 35

>gnl|CDD|205121 pfam12874, zf-met, Zinc-finger of C2H2 type

 Score = 39.0 bits (92), Expect = 1e-04
 Identities = 10/24 (41%), Positives = 14/24 (58%)

Query: 70 WCELCRVDCNTLEILEQHKNGKRH 93
          +CELC V   +   L+ H  GK+H
Sbjct: 2  YCELCNVTFTSESQLKSHLRGKKH 25

This is a zinc-finger domain with the CxxCx(12)Hx(6)H motif, found in multiple copies in a wide range of proteins from plants to metazoans. Some member proteins, particularly those from plants, are annotated as being RNA-binding. Length = 25

>gnl|CDD|197732 smart00451, ZnF_U1, U1-like zinc finger

 Score = 38.4 bits (90), Expect = 2e-04
 Identities = 11/29 (37%), Positives = 18/29 (62%)

Query: 70 WCELCRVDCNTLEILEQHKNGKRHKRNLR 98
          +C+LC V       +E H  GK+HK+N++
Sbjct: 5  YCKLCNVTFTDEISVEAHLKGKKHKKNVK 33

Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins. Length = 35

>gnl|CDD|204841 pfam12171, zf-C2H2_jaz, Zinc-finger double-stranded RNA-binding

 Score = 35.2 bits (82), Expect = 0.002
 Identities = 8/23 (34%), Positives = 13/23 (56%)

Query: 223 CELCNVKCESQVVFDSHLVGKKH 245
           C  C+   +S+   ++HL  KKH
Sbjct: 4   CVACDKYFKSENALENHLKSKKH 26

This domain family is found in archaea and eukaryotes, and is approximately 30 amino acids in length. The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. Length = 27

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	470
smart00451	35	ZnF_U1 U1-like zinc finger. Family of C2H2-type zi	98.56
PF12874	25	zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG	98.45
smart00451	35	ZnF_U1 U1-like zinc finger. Family of C2H2-type zi	98.45
PF12874	25	zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG	98.18
PF12171	27	zf-C2H2_jaz: Zinc-finger double-stranded RNA-bindi	98.15
PF12171	27	zf-C2H2_jaz: Zinc-finger double-stranded RNA-bindi	97.86
PF06220	38	zf-U1: U1 zinc finger; InterPro: IPR013085 Zinc fi	97.47
KOG4727	193	consensus U1-like Zn-finger protein [General funct	97.4
PF06220	38	zf-U1: U1 zinc finger; InterPro: IPR013085 Zinc fi	97.17
KOG4727	193	consensus U1-like Zn-finger protein [General funct	96.97
KOG0150	336	consensus Spliceosomal protein FBP21 [RNA processi	96.69
KOG3408	129	consensus U1-like Zn-finger-containing protein, pr	96.31
KOG3454	165	consensus U1 snRNP-specific protein C [RNA process	96.26
PLN02748	468	tRNA dimethylallyltransferase	96.1
KOG3408	129	consensus U1-like Zn-finger-containing protein, pr	95.85
KOG3032	264	consensus Uncharacterized conserved protein [Funct	95.56
KOG0717	508	consensus Molecular chaperone (DnaJ superfamily) [	95.49
COG5188	470	PRP9 Splicing factor 3a, subunit 3 [RNA processing	95.48
KOG3792	816	consensus Transcription factor NFAT, subunit NF90	95.26
KOG0717	508	consensus Molecular chaperone (DnaJ superfamily) [	95.25
KOG0227	222	consensus Splicing factor 3a, subunit 2 [RNA proce	94.7
KOG2785	390	consensus C2H2-type Zn-finger protein [General fun	94.14
PF14968	336	CCDC84: Coiled coil protein 84	93.88
KOG3454	165	consensus U1 snRNP-specific protein C [RNA process	93.75
PLN02748	468	tRNA dimethylallyltransferase	93.41
PF13894	24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	93.37
COG5112	126	UFD2 U1-like Zn-finger-containing protein [General	93.06
PF12756	100	zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB:	92.43
PF00096	23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	91.99
smart00586	49	ZnF_DBF Zinc finger in DBF-like proteins.	91.89
PF13912	27	zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9	91.29
COG5112	126	UFD2 U1-like Zn-finger-containing protein [General	91.22
smart00586	49	ZnF_DBF Zinc finger in DBF-like proteins.	91.21
KOG3032	264	consensus Uncharacterized conserved protein [Funct	91.2
PF07535	49	zf-DBF: DBF zinc finger; InterPro: IPR006572 Zinc	91.05
COG5246	222	PRP11 Splicing factor 3a, subunit 2 [RNA processin	91.0
PF07535	49	zf-DBF: DBF zinc finger; InterPro: IPR006572 Zinc	89.96
COG5136	188	U1 snRNP-specific protein C [RNA processing and mo	89.93
COG5188	470	PRP9 Splicing factor 3a, subunit 3 [RNA processing	89.75
PF13912	27	zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9	89.52
KOG0227	222	consensus Splicing factor 3a, subunit 2 [RNA proce	89.26
PF13894	24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	87.79
smart00355	26	ZnF_C2H2 zinc finger.	87.3
KOG0150	336	consensus Spliceosomal protein FBP21 [RNA processi	87.01
COG5246	222	PRP11 Splicing factor 3a, subunit 2 [RNA processin	86.18
PF12756	100	zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB:	85.5
KOG4722	672	consensus Zn-finger protein [General function pred	84.88
KOG3792	816	consensus Transcription factor NFAT, subunit NF90	84.28
PF11931	196	DUF3449: Domain of unknown function (DUF3449); Int	83.39
KOG1146	1406	consensus Homeobox protein [General function predi	82.89
PF00096	23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	82.29

>smart00451 ZnF_U1 U1-like zinc finger

Probab=98.56  E-value=5.2e-08  Score=67.24  Aligned_cols=32  Identities=44%  Similarity=0.837  Sum_probs=30.6

Q ss_pred             CEEeeecccccCcHHHHHhhhhhhhHHHHHhh
Q 012121          220 PLICELCNVKCESQVVFDSHLVGKKHLANVKR  251 (470)
Q Consensus       220 ~~~CeLCNV~cnSe~~~~sHL~GKKH~kklKk  251 (470)
                      .|+|++|+++|++...|.+|++||||+++|++
T Consensus         3 ~~~C~~C~~~~~~~~~~~~H~~gk~H~~~~~~   34 (35)
T smart00451        3 GFYCKLCNVTFTDEISVEAHLKGKKHKKNVKK   34 (35)
T ss_pred             CeEccccCCccCCHHHHHHHHChHHHHHHHHc
Confidence            68999999999999999999999999999976

Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.

>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A

Probab=98.45  E-value=8.8e-08  Score=62.12  Aligned_cols=25  Identities=36%  Similarity=0.731  Sum_probs=24.5

Q ss_pred             EEeeecccccCcHHHHHhhhhhhhH
Q 012121          221 LICELCNVKCESQVVFDSHLVGKKH  245 (470)
Q Consensus       221 ~~CeLCNV~cnSe~~~~sHL~GKKH  245 (470)
                      |+|+||++.|+++..|++|++|+||
T Consensus         1 ~~C~~C~~~f~s~~~~~~H~~s~~H   25 (25)
T PF12874_consen    1 FYCDICNKSFSSENSLRQHLRSKKH   25 (25)
T ss_dssp             EEETTTTEEESSHHHHHHHHTTHHH
T ss_pred             CCCCCCCCCcCCHHHHHHHHCcCCC
Confidence            7999999999999999999999999

>smart00451 ZnF_U1 U1-like zinc finger

Probab=98.45  E-value=9.3e-08  Score=65.98  Aligned_cols=34  Identities=32%  Similarity=0.631  Sum_probs=30.9

Q ss_pred             CcccccccccccCCHHHHHHHhcCcchHHHHHhH
Q 012121           67 PMAWCELCRVDCNTLEILEQHKNGKRHKRNLRTH  100 (470)
Q Consensus        67 ~~~yC~VCnVsFnSpsqaqsHy~GKKHkKNLrkL  100 (470)
                      ..+||++|+++|++...+.+|+.||+|+++++++
T Consensus         2 ~~~~C~~C~~~~~~~~~~~~H~~gk~H~~~~~~~   35 (35)
T smart00451        2 GGFYCKLCNVTFTDEISVEAHLKGKKHKKNVKKR   35 (35)
T ss_pred             cCeEccccCCccCCHHHHHHHHChHHHHHHHHcC
Confidence            3579999999999999999999999999998753

Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.

>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A

Probab=98.18  E-value=7.3e-07  Score=57.81  Aligned_cols=25  Identities=28%  Similarity=0.679  Sum_probs=24.3

Q ss_pred             ccccccccccCCHHHHHHHhcCcch
Q 012121           69 AWCELCRVDCNTLEILEQHKNGKRH   93 (470)
Q Consensus        69 ~yC~VCnVsFnSpsqaqsHy~GKKH   93 (470)
                      |+|++|+++|+++.+|++|+.|++|
T Consensus         1 ~~C~~C~~~f~s~~~~~~H~~s~~H   25 (25)
T PF12874_consen    1 FYCDICNKSFSSENSLRQHLRSKKH   25 (25)
T ss_dssp             EEETTTTEEESSHHHHHHHHTTHHH
T ss_pred             CCCCCCCCCcCCHHHHHHHHCcCCC
Confidence            6899999999999999999999998

>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length

Probab=98.15  E-value=7.4e-07  Score=59.51  Aligned_cols=27  Identities=26%  Similarity=0.545  Sum_probs=25.3

Q ss_pred             CEEeeecccccCcHHHHHhhhhhhhHH
Q 012121          220 PLICELCNVKCESQVVFDSHLVGKKHL  246 (470)
Q Consensus       220 ~~~CeLCNV~cnSe~~~~sHL~GKKH~  246 (470)
                      .|||.+|+..|+++.+|++|++||+|+
T Consensus         1 q~~C~~C~k~f~~~~~~~~H~~sk~Hk   27 (27)
T PF12171_consen    1 QFYCDACDKYFSSENQLKQHMKSKKHK   27 (27)
T ss_dssp             -CBBTTTTBBBSSHHHHHCCTTSHHHH
T ss_pred             CCCcccCCCCcCCHHHHHHHHccCCCC
Confidence            489999999999999999999999995

The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.

>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length

Probab=97.86  E-value=5e-06  Score=55.54  Aligned_cols=26  Identities=31%  Similarity=0.617  Sum_probs=25.1

Q ss_pred             ccccccccccCCHHHHHHHhcCcchH
Q 012121           69 AWCELCRVDCNTLEILEQHKNGKRHK   94 (470)
Q Consensus        69 ~yC~VCnVsFnSpsqaqsHy~GKKHk   94 (470)
                      +||.+|++.|+++.++++|+.||+|+
T Consensus         2 ~~C~~C~k~f~~~~~~~~H~~sk~Hk   27 (27)
T PF12171_consen    2 FYCDACDKYFSSENQLKQHMKSKKHK   27 (27)
T ss_dssp             CBBTTTTBBBSSHHHHHCCTTSHHHH
T ss_pred             CCcccCCCCcCCHHHHHHHHccCCCC
Confidence            69999999999999999999999996

The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.

>PF06220 zf-U1: U1 zinc finger; InterPro: IPR013085 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.47  E-value=9.3e-05  Score=54.20  Aligned_cols=33  Identities=27%  Similarity=0.593  Sum_probs=21.9

Q ss_pred             ccccccccccc--CCHHHHHHHhcCcchHHHHHhH
Q 012121           68 MAWCELCRVDC--NTLEILEQHKNGKRHKRNLRTH  100 (470)
Q Consensus        68 ~~yC~VCnVsF--nSpsqaqsHy~GKKHkKNLrkL  100 (470)
                      -+||+.|+++|  +++..-..|..|.+|+.+++.+
T Consensus         3 ryyCdyC~~~~~~d~~~~Rk~H~~G~kH~~nv~~~   37 (38)
T PF06220_consen    3 RYYCDYCKKYLTHDSPSIRKQHERGWKHKENVKRY   37 (38)
T ss_dssp             S-B-TTT--B-S--SHHHHHHHT--THHHHHHHHH
T ss_pred             CeecccccceecCCChHHHHHhhccHHHHHHHHHh
Confidence            47999999999  6777889999999999999864

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. C2H2-type (classical) zinc fingers (Znf) were the first class to be characterised. They contain a short beta hairpin and an alpha helix (beta/beta/alpha structure), where a single zinc atom is held in place by Cys(2)His(2) (C2H2) residues in a tetrahedral array. C2H2 Znf's can be divided into three groups based on the number and pattern of fingers: triple-C2H2 (binds single ligand), multiple-adjacent-C2H2 (binds multiple ligands), and separated paired-C2H2 []. C2H2 Znf's are the most common DNA-binding motifs found in eukaryotic transcription factors, and have also been identified in prokaryotes []. Transcription factors usually contain several Znf's (each with a conserved beta/beta/alpha structure) capable of making multiple contacts along the DNA, where the C2H2 Znf motifs recognise DNA sequences by binding to the major groove of DNA via a short alpha-helix in the Znf, the Znf spanning 3-4 bases of the DNA []. C2H2 Znf's can also bind to RNA and protein targets []. This entry represents a C2H2-type zinc finger motif found in several U1 small nuclear ribonucleoprotein C (U1-C) proteins. Some proteins contain multiple copies of this motif. The U1 small nuclear ribonucleoprotein (U1 snRNP) binds to the pre-mRNA 5' splice site at early stages of spliceosome assembly. Recruitment of U1 to a class of weak 5' splice site is promoted by binding of the protein TIA-1 to uridine-rich sequences immediately downstream from the 5' splice site. Binding of TIA-1 in the vicinity of a 5' splice site helps to stabilise U1 snRNP recruitment, at least in part, via a direct interaction with U1-C, thus providing one molecular mechanism for the function of this splicing regulator []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2VRD_A.

>KOG4727 consensus U1-like Zn-finger protein [General function prediction only]

Probab=97.40  E-value=0.0001  Score=70.11  Aligned_cols=34  Identities=26%  Similarity=0.517  Sum_probs=31.4

Q ss_pred             CcCCEEeeecccccCcHHHHHhhhhhhhHHHHHh
Q 012121          217 GVIPLICELCNVKCESQVVFDSHLVGKKHLANVK  250 (470)
Q Consensus       217 ~~~~~~CeLCNV~cnSe~~~~sHL~GKKH~kklK  250 (470)
                      ....|||.|||..+-...+|-.|||||+|+.+|-
T Consensus        72 q~~GyyCdVCdcvvKDSinflDHiNgKkHqrnlg  105 (193)
T KOG4727|consen   72 QKGGYYCDVCDCVVKDSINFLDHINGKKHQRNLG  105 (193)
T ss_pred             ccCceeeeecceeehhhHHHHHHhccHHHHHHHh
Confidence            3569999999999999999999999999999884

>PF06220 zf-U1: U1 zinc finger; InterPro: IPR013085 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.17  E-value=0.00023  Score=52.17  Aligned_cols=33  Identities=33%  Similarity=0.561  Sum_probs=21.3

Q ss_pred             CEEeeeccccc--CcHHHHHhhhhhhhHHHHHhhh
Q 012121          220 PLICELCNVKC--ESQVVFDSHLVGKKHLANVKRF  252 (470)
Q Consensus       220 ~~~CeLCNV~c--nSe~~~~sHL~GKKH~kklKk~  252 (470)
                      .|||+.|++++  ++...-+.|..|+||+.++++.
T Consensus         3 ryyCdyC~~~~~~d~~~~Rk~H~~G~kH~~nv~~~   37 (38)
T PF06220_consen    3 RYYCDYCKKYLTHDSPSIRKQHERGWKHKENVKRY   37 (38)
T ss_dssp             S-B-TTT--B-S--SHHHHHHHT--THHHHHHHHH
T ss_pred             CeecccccceecCCChHHHHHhhccHHHHHHHHHh
Confidence            68999999999  4556779999999999999763

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. C2H2-type (classical) zinc fingers (Znf) were the first class to be characterised. They contain a short beta hairpin and an alpha helix (beta/beta/alpha structure), where a single zinc atom is held in place by Cys(2)His(2) (C2H2) residues in a tetrahedral array. C2H2 Znf's can be divided into three groups based on the number and pattern of fingers: triple-C2H2 (binds single ligand), multiple-adjacent-C2H2 (binds multiple ligands), and separated paired-C2H2 []. C2H2 Znf's are the most common DNA-binding motifs found in eukaryotic transcription factors, and have also been identified in prokaryotes []. Transcription factors usually contain several Znf's (each with a conserved beta/beta/alpha structure) capable of making multiple contacts along the DNA, where the C2H2 Znf motifs recognise DNA sequences by binding to the major groove of DNA via a short alpha-helix in the Znf, the Znf spanning 3-4 bases of the DNA []. C2H2 Znf's can also bind to RNA and protein targets []. This entry represents a C2H2-type zinc finger motif found in several U1 small nuclear ribonucleoprotein C (U1-C) proteins. Some proteins contain multiple copies of this motif. The U1 small nuclear ribonucleoprotein (U1 snRNP) binds to the pre-mRNA 5' splice site at early stages of spliceosome assembly. Recruitment of U1 to a class of weak 5' splice site is promoted by binding of the protein TIA-1 to uridine-rich sequences immediately downstream from the 5' splice site. Binding of TIA-1 in the vicinity of a 5' splice site helps to stabilise U1 snRNP recruitment, at least in part, via a direct interaction with U1-C, thus providing one molecular mechanism for the function of this splicing regulator []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2VRD_A.

>KOG4727 consensus U1-like Zn-finger protein [General function prediction only]

Probab=96.97  E-value=0.00045  Score=65.86  Aligned_cols=37  Identities=27%  Similarity=0.462  Sum_probs=33.0

Q ss_pred             CCcccccccccccCCHHHHHHHhcCcchHHHHHhHHh
Q 012121           66 PPMAWCELCRVDCNTLEILEQHKNGKRHKRNLRTHAD  102 (470)
Q Consensus        66 ~~~~yC~VCnVsFnSpsqaqsHy~GKKHkKNLrkLk~  102 (470)
                      ...+||+||+..|.-...|..|++||+|++|+.-+..
T Consensus        73 ~~GyyCdVCdcvvKDSinflDHiNgKkHqrnlgmsm~  109 (193)
T KOG4727|consen   73 KGGYYCDVCDCVVKDSINFLDHINGKKHQRNLGMSMR  109 (193)
T ss_pred             cCceeeeecceeehhhHHHHHHhccHHHHHHHhhhhc
Confidence            4789999999999999999999999999999876543

>KOG0150 consensus Spliceosomal protein FBP21 [RNA processing and modification]

Probab=96.69  E-value=0.00073  Score=69.12  Aligned_cols=40  Identities=25%  Similarity=0.548  Sum_probs=36.4

Q ss_pred             CCCCCCCccccccccccc-CCHHHHHHHhcCcchHHHHHhH
Q 012121           61 PTRPPPPMAWCELCRVDC-NTLEILEQHKNGKRHKRNLRTH  100 (470)
Q Consensus        61 ~~~~p~~~~yC~VCnVsF-nSpsqaqsHy~GKKHkKNLrkL  100 (470)
                      -.|.+....||++|++|| +++...+.|-.||||+-+|.+.
T Consensus         3 eYWkS~~kkfCdyCKiWi~dN~~Sv~~He~GkrHke~V~Kr   43 (336)
T KOG0150|consen    3 EYWKSQPKKFCDYCKIWIKDNPASVRFHERGKRHKENVAKR   43 (336)
T ss_pred             hhhhhccchhhhhhhhhhcCChHHHHhHhhhhHHHHHHHHH
Confidence            469999999999999999 7888889999999999999854

>KOG3408 consensus U1-like Zn-finger-containing protein, probabl erole in RNA processing/splicing [RNA processing and modification]

Probab=96.31  E-value=0.0022  Score=58.29  Aligned_cols=37  Identities=22%  Similarity=0.291  Sum_probs=34.8

Q ss_pred             CcCCEEeeecccccCcHHHHHhhhhhhhHHHHHhhhc
Q 012121          217 GVIPLICELCNVKCESQVVFDSHLVGKKHLANVKRFH  253 (470)
Q Consensus       217 ~~~~~~CeLCNV~cnSe~~~~sHL~GKKH~kklKk~~  253 (470)
                      ....|||-.|.-.|.+..+|+.|+++|.|+++||++.
T Consensus        54 G~GqfyCi~CaRyFi~~~~l~~H~ktK~HKrRvK~l~   90 (129)
T KOG3408|consen   54 GGGQFYCIECARYFIDAKALKTHFKTKVHKRRVKELR   90 (129)
T ss_pred             CCceeehhhhhhhhcchHHHHHHHhccHHHHHHHhcc
Confidence            3579999999999999999999999999999999985

>KOG3454 consensus U1 snRNP-specific protein C [RNA processing and modification]

Probab=96.26  E-value=0.0023  Score=60.48  Aligned_cols=36  Identities=22%  Similarity=0.542  Sum_probs=31.9

Q ss_pred             ccccccccccc--CCHHHHHHHhcCcchHHHHHhHHhh
Q 012121           68 MAWCELCRVDC--NTLEILEQHKNGKRHKRNLRTHADL  103 (470)
Q Consensus        68 ~~yC~VCnVsF--nSpsqaqsHy~GKKHkKNLrkLk~~  103 (470)
                      -+||+.|+.++  +|.++-.+|+.|+||++|++-+...
T Consensus         3 RYyCDYCdt~LthDslsvRK~H~~GrkH~~nvk~YY~k   40 (165)
T KOG3454|consen    3 RYYCDYCDTYLTHDSLSVRKTHCGGRKHKDNVKDYYQK   40 (165)
T ss_pred             cchhhhhhhhhhcccHHHHHhhhhhHHHHHHHHHHHHH
Confidence            46899999887  6999999999999999999977644

>PLN02748 tRNA dimethylallyltransferase

Probab=96.10  E-value=0.0029  Score=67.70  Aligned_cols=35  Identities=23%  Similarity=0.500  Sum_probs=32.4

Q ss_pred             CCEEeeeccc-ccCcHHHHHhhhhhhhHHHHHhhhc
Q 012121          219 IPLICELCNV-KCESQVVFDSHLVGKKHLANVKRFH  253 (470)
Q Consensus       219 ~~~~CeLCNV-~cnSe~~~~sHL~GKKH~kklKk~~  253 (470)
                      ..|+|++|+. .++++.+++.|++|++|++++++..
T Consensus       417 ~~~~Ce~C~~~~~~G~~eW~~Hlksr~Hk~~~~~~~  452 (468)
T PLN02748        417 TQYVCEACGNKVLRGAHEWEQHKQGRGHRKRVQRLK  452 (468)
T ss_pred             ccccccCCCCcccCCHHHHHHHhcchHHHHHHhHHH
Confidence            5788999998 8999999999999999999999864

>KOG3408 consensus U1-like Zn-finger-containing protein, probabl erole in RNA processing/splicing [RNA processing and modification]

Probab=95.85  E-value=0.0044  Score=56.40  Aligned_cols=40  Identities=23%  Similarity=0.340  Sum_probs=35.8

Q ss_pred             CCCCcccccccccccCCHHHHHHHhcCcchHHHHHhHHhh
Q 012121           64 PPPPMAWCELCRVDCNTLEILEQHKNGKRHKRNLRTHADL  103 (470)
Q Consensus        64 ~p~~~~yC~VCnVsFnSpsqaqsHy~GKKHkKNLrkLk~~  103 (470)
                      +--..+||-.|...|.+..++..|+.+|.|+++++.|...
T Consensus        53 PG~GqfyCi~CaRyFi~~~~l~~H~ktK~HKrRvK~l~~~   92 (129)
T KOG3408|consen   53 PGGGQFYCIECARYFIDAKALKTHFKTKVHKRRVKELREV   92 (129)
T ss_pred             CCCceeehhhhhhhhcchHHHHHHHhccHHHHHHHhcccC
Confidence            3356789999999999999999999999999999999753

>KOG3032 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.56  E-value=0.02  Score=57.19  Aligned_cols=60  Identities=25%  Similarity=0.393  Sum_probs=45.1

Q ss_pred             CcCCEEeeecccccCcHHHHHhhhhhhhHHHHHhhhcc--cccccccccccccCCCCCCCCCc
Q 012121          217 GVIPLICELCNVKCESQVVFDSHLVGKKHLANVKRFHG--HRALYGEAALQSLYPASFNSLSS  277 (470)
Q Consensus       217 ~~~~~~CeLCNV~cnSe~~~~sHL~GKKH~kklKk~~g--~~~l~g~~~lq~~~P~n~sa~s~  277 (470)
                      ..+.+.|-|||+-.- +..++.|.+||||...+-++..  .+-.-..+.+.+-.|+.+|+.+.
T Consensus        32 ~sgql~C~vCn~piK-p~lW~vHvnsKkHre~id~lKs~~~Kv~k~~~T~~p~~p~spn~kts   93 (264)
T KOG3032|consen   32 ESGQLVCRVCNVPIK-PSLWDVHVNSKKHREAIDSLKSRGSKVAKTRPTKIPALPKSPNSKTS   93 (264)
T ss_pred             CCCCeeEEEecCccc-HHHHHHHhccHHHHHHHHHHHhhhcccccCcCccCccCCCCCCcccc
Confidence            347899999999999 9999999999999999877752  22222225566667777777664

>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=95.49  E-value=0.0067  Score=65.12  Aligned_cols=34  Identities=26%  Similarity=0.579  Sum_probs=32.7

Q ss_pred             ccccccccccCCHHHHHHHhcCcchHHHHHhHHh
Q 012121           69 AWCELCRVDCNTLEILEQHKNGKRHKRNLRTHAD  102 (470)
Q Consensus        69 ~yC~VCnVsFnSpsqaqsHy~GKKHkKNLrkLk~  102 (470)
                      .||.||+++|.|+-++..|-..|||++||+.|..
T Consensus       293 lyC~vCnKsFKseKq~kNHEnSKKHkenv~eLrq  326 (508)
T KOG0717|consen  293 LYCVVCNKSFKSEKQLKNHENSKKHKENVAELRQ  326 (508)
T ss_pred             eEEeeccccccchHHHHhhHHHHHHHHHHHHHHH
Confidence            8999999999999999999999999999999874

>COG5188 PRP9 Splicing factor 3a, subunit 3 [RNA processing and modification]

Probab=95.48  E-value=0.0055  Score=64.12  Aligned_cols=36  Identities=25%  Similarity=0.561  Sum_probs=33.3

Q ss_pred             CcccccccccccCCHHHHHHHhcCcchHHHHHhHHh
Q 012121           67 PMAWCELCRVDCNTLEILEQHKNGKRHKRNLRTHAD  102 (470)
Q Consensus        67 ~~~yC~VCnVsFnSpsqaqsHy~GKKHkKNLrkLk~  102 (470)
                      +.+||.+|..||....+|+.|+.||.|.|+.++...
T Consensus       237 ~~~YC~~C~r~f~~~~VFe~Hl~gK~H~k~~~~~~~  272 (470)
T COG5188         237 PKVYCVKCGREFSRSKVFEYHLEGKRHCKEGQGKEE  272 (470)
T ss_pred             cceeeHhhhhHhhhhHHHHHHHhhhhhhhhhhhhhH
Confidence            568999999999999999999999999999987765

>KOG3792 consensus Transcription factor NFAT, subunit NF90 [General function prediction only]

Probab=95.26  E-value=0.0074  Score=67.40  Aligned_cols=33  Identities=24%  Similarity=0.288  Sum_probs=30.1

Q ss_pred             CEEeeecccccCcHHHHHhhhhhhhHHHHHhhh
Q 012121          220 PLICELCNVKCESQVVFDSHLVGKKHLANVKRF  252 (470)
Q Consensus       220 ~~~CeLCNV~cnSe~~~~sHL~GKKH~kklKk~  252 (470)
                      .|+|++|-++||+.+-+..||.+-+|.+..+.+
T Consensus       235 el~cEksi~tcs~pd~~g~alRrv~ec~~skL~  267 (816)
T KOG3792|consen  235 ELHCEKSIVTCSGPDAYGAALRRVKECKVSKLH  267 (816)
T ss_pred             HHHHHHhhccccCccchHHHHHHHHHhhhhccc
Confidence            469999999999999999999999999887665

>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=95.25  E-value=0.011  Score=63.56  Aligned_cols=37  Identities=30%  Similarity=0.470  Sum_probs=33.9

Q ss_pred             EEeeecccccCcHHHHHhhhhhhhHHHHHhhhccccc
Q 012121          221 LICELCNVKCESQVVFDSHLVGKKHLANVKRFHGHRA  257 (470)
Q Consensus       221 ~~CeLCNV~cnSe~~~~sHL~GKKH~kklKk~~g~~~  257 (470)
                      +||-+||.+|-|+-+|..|.+.|||..+|.++.+.+.
T Consensus       293 lyC~vCnKsFKseKq~kNHEnSKKHkenv~eLrqemE  329 (508)
T KOG0717|consen  293 LYCVVCNKSFKSEKQLKNHENSKKHKENVAELRQEME  329 (508)
T ss_pred             eEEeeccccccchHHHHhhHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999998865443

>KOG0227 consensus Splicing factor 3a, subunit 2 [RNA processing and modification]

Probab=94.70  E-value=0.017  Score=56.36  Aligned_cols=36  Identities=28%  Similarity=0.406  Sum_probs=32.8

Q ss_pred             CcCCEEeeecccccCcHHHHHhhhhhhhHHHHHhhh
Q 012121          217 GVIPLICELCNVKCESQVVFDSHLVGKKHLANVKRF  252 (470)
Q Consensus       217 ~~~~~~CeLCNV~cnSe~~~~sHL~GKKH~kklKk~  252 (470)
                      ...+|.|.||+-.-+++..|-.|..||||+.+|.+.
T Consensus        50 h~G~yeCkLClT~H~ne~Syl~HtqGKKHq~Nlarr   85 (222)
T KOG0227|consen   50 HLGKYECKLCLTLHNNEGSYLAHTQGKKHQTNLARR   85 (222)
T ss_pred             cCcceeehhhhhhhcchhhhhhhhccchhhHHHHHH
Confidence            346899999999999999999999999999998764

>KOG2785 consensus C2H2-type Zn-finger protein [General function prediction only]

Probab=94.14  E-value=0.03  Score=58.96  Aligned_cols=36  Identities=31%  Similarity=0.530  Sum_probs=33.0

Q ss_pred             CCEEeeecccccCcHHHHHhhhhhhhHHHHHhhhcc
Q 012121          219 IPLICELCNVKCESQVVFDSHLVGKKHLANVKRFHG  254 (470)
Q Consensus       219 ~~~~CeLCNV~cnSe~~~~sHL~GKKH~kklKk~~g  254 (470)
                      ..++|.+|+..+-|+..+..||..|||..+++++..
T Consensus        67 ~~~~c~~c~k~~~s~~a~~~hl~Sk~h~~~~~~~~r  102 (390)
T KOG2785|consen   67 SVVYCEACNKSFASPKAHENHLKSKKHVENLSNHQR  102 (390)
T ss_pred             cceehHHhhccccChhhHHHHHHHhhcchhhhhhhc
Confidence            468999999999999999999999999999988643

>PF14968 CCDC84: Coiled coil protein 84

Probab=93.88  E-value=0.051  Score=56.42  Aligned_cols=30  Identities=23%  Similarity=0.621  Sum_probs=26.1

Q ss_pred             cccccccccCCHHHHHHHhcCcchHHHHHhHHh
Q 012121           70 WCELCRVDCNTLEILEQHKNGKRHKRNLRTHAD  102 (470)
Q Consensus        70 yC~VCnVsFnSpsqaqsHy~GKKHkKNLrkLk~  102 (470)
                      ||.||++.+..   -+-|.-+++|+++|+.+-.
T Consensus         1 yC~vCr~~h~~---gr~H~Y~~~Hq~~L~~~L~   30 (336)
T PF14968_consen    1 YCEVCRRNHDQ---GRRHVYSPKHQKSLSAFLS   30 (336)
T ss_pred             CcchhhCcccc---cCCCccCHHHHHHHHHHHH
Confidence            89999999876   6789999999999997754

>KOG3454 consensus U1 snRNP-specific protein C [RNA processing and modification]

Probab=93.75  E-value=0.025  Score=53.65  Aligned_cols=33  Identities=33%  Similarity=0.575  Sum_probs=28.0

Q ss_pred             CEEeeecccccC--cHHHHHhhhhhhhHHHHHhhh
Q 012121          220 PLICELCNVKCE--SQVVFDSHLVGKKHLANVKRF  252 (470)
Q Consensus       220 ~~~CeLCNV~cn--Se~~~~sHL~GKKH~kklKk~  252 (470)
                      .|||+-|+...+  |..+=+.|+.|+||++++|-.
T Consensus         3 RYyCDYCdt~LthDslsvRK~H~~GrkH~~nvk~Y   37 (165)
T KOG3454|consen    3 RYYCDYCDTYLTHDSLSVRKTHCGGRKHKDNVKDY   37 (165)
T ss_pred             cchhhhhhhhhhcccHHHHHhhhhhHHHHHHHHHH
Confidence            589999996665  667999999999999998654

>PLN02748 tRNA dimethylallyltransferase

Probab=93.41  E-value=0.054  Score=58.26  Aligned_cols=37  Identities=24%  Similarity=0.388  Sum_probs=32.6

Q ss_pred             Cccccccccc-ccCCHHHHHHHhcCcchHHHHHhHHhh
Q 012121           67 PMAWCELCRV-DCNTLEILEQHKNGKRHKRNLRTHADL  103 (470)
Q Consensus        67 ~~~yC~VCnV-sFnSpsqaqsHy~GKKHkKNLrkLk~~  103 (470)
                      ..+.|++|+. .+.++.+-+.|+.|++|++++++.+..
T Consensus       417 ~~~~Ce~C~~~~~~G~~eW~~Hlksr~Hk~~~~~~~k~  454 (468)
T PLN02748        417 TQYVCEACGNKVLRGAHEWEQHKQGRGHRKRVQRLKQK  454 (468)
T ss_pred             ccccccCCCCcccCCHHHHHHHhcchHHHHHHhHHHhh
Confidence            4446999998 799999999999999999999987654

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A

Probab=93.37  E-value=0.054  Score=33.43  Aligned_cols=21  Identities=19%  Similarity=0.529  Sum_probs=17.8

Q ss_pred             EEeeecccccCcHHHHHhhhh
Q 012121          221 LICELCNVKCESQVVFDSHLV  241 (470)
Q Consensus       221 ~~CeLCNV~cnSe~~~~sHL~  241 (470)
                      |.|.+|+..|.+...|..|+.
T Consensus         1 ~~C~~C~~~~~~~~~l~~H~~   21 (24)
T PF13894_consen    1 FQCPICGKSFRSKSELRQHMR   21 (24)
T ss_dssp             EE-SSTS-EESSHHHHHHHHH
T ss_pred             CCCcCCCCcCCcHHHHHHHHH
Confidence            689999999999999999985

...

>COG5112 UFD2 U1-like Zn-finger-containing protein [General function prediction only]

Probab=93.06  E-value=0.08  Score=47.71  Aligned_cols=43  Identities=30%  Similarity=0.446  Sum_probs=37.8

Q ss_pred             CCCCCCCcccccccccccCCHHHHHHHhcCcchHHHHHhHHhh
Q 012121           61 PTRPPPPMAWCELCRVDCNTLEILEQHKNGKRHKRNLRTHADL  103 (470)
Q Consensus        61 ~~~~p~~~~yC~VCnVsFnSpsqaqsHy~GKKHkKNLrkLk~~  103 (470)
                      |..+--..+||--|...|.++..|..|..||-|+++++.+..-
T Consensus        48 p~lPGlGqhYCieCaryf~t~~aL~~HkkgkvHkRR~KelRev   90 (126)
T COG5112          48 PELPGLGQHYCIECARYFITEKALMEHKKGKVHKRRAKELREV   90 (126)
T ss_pred             CCCCCCceeeeehhHHHHHHHHHHHHHhccchhHHHHHHHhcC
Confidence            4445567899999999999999999999999999999988764

>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A

Probab=92.43  E-value=0.064  Score=43.08  Aligned_cols=31  Identities=23%  Similarity=0.453  Sum_probs=26.5

Q ss_pred             CEEeeecccccCcHHHHHhhhhhhhHHHHHh
Q 012121          220 PLICELCNVKCESQVVFDSHLVGKKHLANVK  250 (470)
Q Consensus       220 ~~~CeLCNV~cnSe~~~~sHL~GKKH~kklK  250 (470)
                      .+.|.+|+..|.+...|..||+.+.|++...
T Consensus        50 ~~~C~~C~~~f~s~~~l~~Hm~~~~H~~~~~   80 (100)
T PF12756_consen   50 SFRCPYCNKTFRSREALQEHMRSKHHKKRNS   80 (100)
T ss_dssp             SEEBSSSS-EESSHHHHHHHHHHTTTTC-S-
T ss_pred             CCCCCccCCCCcCHHHHHHHHcCccCCCccc
Confidence            5899999999999999999999999988754

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=91.99  E-value=0.11  Score=32.77  Aligned_cols=22  Identities=18%  Similarity=0.455  Sum_probs=20.4

Q ss_pred             EEeeecccccCcHHHHHhhhhh
Q 012121          221 LICELCNVKCESQVVFDSHLVG  242 (470)
Q Consensus       221 ~~CeLCNV~cnSe~~~~sHL~G  242 (470)
                      |.|.+|+..|++...|..|++-
T Consensus         1 y~C~~C~~~f~~~~~l~~H~~~   22 (23)
T PF00096_consen    1 YKCPICGKSFSSKSNLKRHMRR   22 (23)
T ss_dssp             EEETTTTEEESSHHHHHHHHHH
T ss_pred             CCCCCCCCccCCHHHHHHHHhH
Confidence            6899999999999999999864

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....

>smart00586 ZnF_DBF Zinc finger in DBF-like proteins

Probab=91.89  E-value=0.076  Score=41.45  Aligned_cols=29  Identities=31%  Similarity=0.549  Sum_probs=24.5

Q ss_pred             CCcccccccccccCCHHHHHHHhcCcchHHHH
Q 012121           66 PPMAWCELCRVDCNTLEILEQHKNGKRHKRNL   97 (470)
Q Consensus        66 ~~~~yC~VCnVsFnSpsqaqsHy~GKKHkKNL   97 (470)
                      ++..||+.|.+.|.   .|..|+.+++|++=.
T Consensus         3 ~k~GYCE~Cr~kfd---~l~~Hi~s~~Hr~FA   31 (49)
T smart00586        3 KKPGYCENCREKYD---DLETHLLSEKHRRFA   31 (49)
T ss_pred             CCCcccccHhHHHh---hHHHHhccHHHHHHH
Confidence            35679999999998   578899999999743

>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B

Probab=91.29  E-value=0.13  Score=33.67  Aligned_cols=22  Identities=23%  Similarity=0.478  Sum_probs=20.3

Q ss_pred             CEEeeecccccCcHHHHHhhhh
Q 012121          220 PLICELCNVKCESQVVFDSHLV  241 (470)
Q Consensus       220 ~~~CeLCNV~cnSe~~~~sHL~  241 (470)
                      .|.|..|+..|.+...|..|++
T Consensus         1 ~~~C~~C~~~F~~~~~l~~H~~   22 (27)
T PF13912_consen    1 PFECDECGKTFSSLSALREHKR   22 (27)
T ss_dssp             SEEETTTTEEESSHHHHHHHHC
T ss_pred             CCCCCccCCccCChhHHHHHhH
Confidence            3789999999999999999993

>COG5112 UFD2 U1-like Zn-finger-containing protein [General function prediction only]

Probab=91.22  E-value=0.11  Score=46.81  Aligned_cols=37  Identities=19%  Similarity=0.221  Sum_probs=34.1

Q ss_pred             cCCEEeeecccccCcHHHHHhhhhhhhHHHHHhhhcc
Q 012121          218 VIPLICELCNVKCESQVVFDSHLVGKKHLANVKRFHG  254 (470)
Q Consensus       218 ~~~~~CeLCNV~cnSe~~~~sHL~GKKH~kklKk~~g  254 (470)
                      ...+||--|...|.++..|..|++||-|+.++|++.+
T Consensus        53 lGqhYCieCaryf~t~~aL~~HkkgkvHkRR~KelRe   89 (126)
T COG5112          53 LGQHYCIECARYFITEKALMEHKKGKVHKRRAKELRE   89 (126)
T ss_pred             CceeeeehhHHHHHHHHHHHHHhccchhHHHHHHHhc
Confidence            3689999999999999999999999999999998843

>smart00586 ZnF_DBF Zinc finger in DBF-like proteins

Probab=91.21  E-value=0.077  Score=41.42  Aligned_cols=30  Identities=30%  Similarity=0.538  Sum_probs=25.5

Q ss_pred             CEEeeecccccCcHHHHHhhhhhhhHHHHHhhh
Q 012121          220 PLICELCNVKCESQVVFDSHLVGKKHLANVKRF  252 (470)
Q Consensus       220 ~~~CeLCNV~cnSe~~~~sHL~GKKH~kklKk~  252 (470)
                      .-||++|.+.|.   .|..|+.++||++=.+..
T Consensus         5 ~GYCE~Cr~kfd---~l~~Hi~s~~Hr~FA~~~   34 (49)
T smart00586        5 PGYCENCREKYD---DLETHLLSEKHRRFAENN   34 (49)
T ss_pred             CcccccHhHHHh---hHHHHhccHHHHHHHcCc
Confidence            449999999987   789999999998876554

>KOG3032 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.20  E-value=0.33  Score=48.75  Aligned_cols=41  Identities=17%  Similarity=0.353  Sum_probs=36.4

Q ss_pred             CCCCCCcccccccccccCCHHHHHHHhcCcchHHHHHhHHhh
Q 012121           62 TRPPPPMAWCELCRVDCNTLEILEQHKNGKRHKRNLRTHADL  103 (470)
Q Consensus        62 ~~~p~~~~yC~VCnVsFnSpsqaqsHy~GKKHkKNLrkLk~~  103 (470)
                      +.-+.....|.||++-.. +.....|.+||+|+-++..|+.-
T Consensus        29 kyn~sgql~C~vCn~piK-p~lW~vHvnsKkHre~id~lKs~   69 (264)
T KOG3032|consen   29 KYNESGQLVCRVCNVPIK-PSLWDVHVNSKKHREAIDSLKSR   69 (264)
T ss_pred             ccCCCCCeeEEEecCccc-HHHHHHHhccHHHHHHHHHHHhh
Confidence            445677788999999999 99999999999999999999943

>PF07535 zf-DBF: DBF zinc finger; InterPro: IPR006572 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=91.05  E-value=0.095  Score=40.79  Aligned_cols=30  Identities=30%  Similarity=0.520  Sum_probs=25.4

Q ss_pred             CEEeeecccccCcHHHHHhhhhhhhHHHHHhhh
Q 012121          220 PLICELCNVKCESQVVFDSHLVGKKHLANVKRF  252 (470)
Q Consensus       220 ~~~CeLCNV~cnSe~~~~sHL~GKKH~kklKk~  252 (470)
                      .-||+.|.+.|.   .|..|+.+++|++-....
T Consensus         5 ~GYCE~C~~ky~---~l~~Hi~s~~Hr~FA~~~   34 (49)
T PF07535_consen    5 PGYCENCRVKYD---DLEEHIQSEKHRKFAEND   34 (49)
T ss_pred             CccCccccchhh---hHHHHhCCHHHHHHHcCc
Confidence            349999999998   599999999998876543

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. In eukaryotes, initiation of DNA replication requires the assembly of pre-replication complexes (pre-RCs) on chromatin during the G1 phase. In the S phase, pre-RCs are activated by two protein kinases, Cdk2 and Cdc7, which results in the loading of replication factors and the unwinding of replication origins by the MCM helicase complex []. Cdc7 is a serine/threonine kinase that is conserved from yeast to human. It is regulated by its association with a regulatory subunit, the Dbf4 protein. This complex is often referred to as DDK (Dbf4-dependent kinase) []. DBF4 contains an N-terminal BRCT domain and a C-terminal conserved region that could potentially coordinate one zinc atom, the DBF4-type zinc finger. This entry represents the zinc finger, which is important for the interaction with Cdc7 [, ]. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding

>COG5246 PRP11 Splicing factor 3a, subunit 2 [RNA processing and modification]

Probab=91.00  E-value=0.15  Score=49.68  Aligned_cols=38  Identities=29%  Similarity=0.431  Sum_probs=33.4

Q ss_pred             CcCCEEeeecccccCcHHHHHhhhhhhhHHHHHhhhcc
Q 012121          217 GVIPLICELCNVKCESQVVFDSHLVGKKHLANVKRFHG  254 (470)
Q Consensus       217 ~~~~~~CeLCNV~cnSe~~~~sHL~GKKH~kklKk~~g  254 (470)
                      ....|.|.||+-.--++..|..|+.||||+.++.+.+.
T Consensus        50 h~Gk~vC~LC~T~H~~e~Sy~~H~~GKKH~~n~~rrs~   87 (222)
T COG5246          50 HTGKYVCLLCKTKHLTEMSYVKHREGKKHKENSSRRSE   87 (222)
T ss_pred             CCCcEEeeeeccccccHHHHHHhhccchhhhhHHHHHH
Confidence            45689999999999999999999999999999876533

>PF07535 zf-DBF: DBF zinc finger; InterPro: IPR006572 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=89.96  E-value=0.19  Score=39.14  Aligned_cols=29  Identities=31%  Similarity=0.692  Sum_probs=24.7

Q ss_pred             CCcccccccccccCCHHHHHHHhcCcchHHHH
Q 012121           66 PPMAWCELCRVDCNTLEILEQHKNGKRHKRNL   97 (470)
Q Consensus        66 ~~~~yC~VCnVsFnSpsqaqsHy~GKKHkKNL   97 (470)
                      .+..||+.|.+.|.+   |..|+.+++|++=.
T Consensus         3 ~k~GYCE~C~~ky~~---l~~Hi~s~~Hr~FA   31 (49)
T PF07535_consen    3 KKPGYCENCRVKYDD---LEEHIQSEKHRKFA   31 (49)
T ss_pred             CCCccCccccchhhh---HHHHhCCHHHHHHH
Confidence            456799999999985   88999999999644

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. In eukaryotes, initiation of DNA replication requires the assembly of pre-replication complexes (pre-RCs) on chromatin during the G1 phase. In the S phase, pre-RCs are activated by two protein kinases, Cdk2 and Cdc7, which results in the loading of replication factors and the unwinding of replication origins by the MCM helicase complex []. Cdc7 is a serine/threonine kinase that is conserved from yeast to human. It is regulated by its association with a regulatory subunit, the Dbf4 protein. This complex is often referred to as DDK (Dbf4-dependent kinase) []. DBF4 contains an N-terminal BRCT domain and a C-terminal conserved region that could potentially coordinate one zinc atom, the DBF4-type zinc finger. This entry represents the zinc finger, which is important for the interaction with Cdc7 [, ]. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding

>COG5136 U1 snRNP-specific protein C [RNA processing and modification]

Probab=89.93  E-value=0.13  Score=49.21  Aligned_cols=35  Identities=20%  Similarity=0.323  Sum_probs=30.4

Q ss_pred             ccccccccccc--CCHHHHHHHhcCcchHHHHHhHHh
Q 012121           68 MAWCELCRVDC--NTLEILEQHKNGKRHKRNLRTHAD  102 (470)
Q Consensus        68 ~~yC~VCnVsF--nSpsqaqsHy~GKKHkKNLrkLk~  102 (470)
                      -+||+.|++|+  ++.++-..|+.|++|..+.+.+..
T Consensus         3 RY~CeyC~~~LthD~lsvRk~H~~G~~H~~~~~dYY~   39 (188)
T COG5136           3 RYFCEYCNKMLTHDRLSVRKMHCGGAKHGLMRKDYYM   39 (188)
T ss_pred             chHHHHHHHHHhccHHHHHHHhhhhHHHHHHHHHHHH
Confidence            36899999998  588899999999999999886654

>COG5188 PRP9 Splicing factor 3a, subunit 3 [RNA processing and modification]

Probab=89.75  E-value=0.15  Score=53.76  Aligned_cols=36  Identities=25%  Similarity=0.413  Sum_probs=32.3

Q ss_pred             CCEEeeecccccCcHHHHHhhhhhhhHHHHHhhhcc
Q 012121          219 IPLICELCNVKCESQVVFDSHLVGKKHLANVKRFHG  254 (470)
Q Consensus       219 ~~~~CeLCNV~cnSe~~~~sHL~GKKH~kklKk~~g  254 (470)
                      ..+||..|..+|....+|..|+.||.|.+..+....
T Consensus       237 ~~~YC~~C~r~f~~~~VFe~Hl~gK~H~k~~~~~~~  272 (470)
T COG5188         237 PKVYCVKCGREFSRSKVFEYHLEGKRHCKEGQGKEE  272 (470)
T ss_pred             cceeeHhhhhHhhhhHHHHHHHhhhhhhhhhhhhhH
Confidence            368999999999999999999999999998877544

>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B

Probab=89.52  E-value=0.27  Score=32.17  Aligned_cols=20  Identities=30%  Similarity=0.566  Sum_probs=19.0

Q ss_pred             ccccccccccCCHHHHHHHh
Q 012121           69 AWCELCRVDCNTLEILEQHK   88 (470)
Q Consensus        69 ~yC~VCnVsFnSpsqaqsHy   88 (470)
                      +.|++|+++|.+...|..|.
T Consensus         2 ~~C~~C~~~F~~~~~l~~H~   21 (27)
T PF13912_consen    2 FECDECGKTFSSLSALREHK   21 (27)
T ss_dssp             EEETTTTEEESSHHHHHHHH
T ss_pred             CCCCccCCccCChhHHHHHh
Confidence            56999999999999999998

>KOG0227 consensus Splicing factor 3a, subunit 2 [RNA processing and modification]

Probab=89.26  E-value=0.24  Score=48.60  Aligned_cols=38  Identities=29%  Similarity=0.344  Sum_probs=33.6

Q ss_pred             CCcccccccccccCCHHHHHHHhcCcchHHHHHhHHhh
Q 012121           66 PPMAWCELCRVDCNTLEILEQHKNGKRHKRNLRTHADL  103 (470)
Q Consensus        66 ~~~~yC~VCnVsFnSpsqaqsHy~GKKHkKNLrkLk~~  103 (470)
                      -..+-|.+|.-.-+++..+..|..||||+-||.+....
T Consensus        51 ~G~yeCkLClT~H~ne~Syl~HtqGKKHq~Nlarraa~   88 (222)
T KOG0227|consen   51 LGKYECKLCLTLHNNEGSYLAHTQGKKHQTNLARRAAK   88 (222)
T ss_pred             CcceeehhhhhhhcchhhhhhhhccchhhHHHHHHHHH
Confidence            34556999999999999999999999999999988765

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A

Probab=87.79  E-value=0.38  Score=29.52  Aligned_cols=21  Identities=24%  Similarity=0.422  Sum_probs=16.9

Q ss_pred             ccccccccccCCHHHHHHHhc
Q 012121           69 AWCELCRVDCNTLEILEQHKN   89 (470)
Q Consensus        69 ~yC~VCnVsFnSpsqaqsHy~   89 (470)
                      +-|.+|+..|.+...+..|+.
T Consensus         1 ~~C~~C~~~~~~~~~l~~H~~   21 (24)
T PF13894_consen    1 FQCPICGKSFRSKSELRQHMR   21 (24)
T ss_dssp             EE-SSTS-EESSHHHHHHHHH
T ss_pred             CCCcCCCCcCCcHHHHHHHHH
Confidence            459999999999999999974

...

>smart00355 ZnF_C2H2 zinc finger

Probab=87.30  E-value=0.31  Score=30.03  Aligned_cols=24  Identities=21%  Similarity=0.455  Sum_probs=21.0

Q ss_pred             EEeeecccccCcHHHHHhhhhhhhHH
Q 012121          221 LICELCNVKCESQVVFDSHLVGKKHL  246 (470)
Q Consensus       221 ~~CeLCNV~cnSe~~~~sHL~GKKH~  246 (470)
                      |.|..|+..|++...|..|+.  .|.
T Consensus         1 ~~C~~C~~~f~~~~~l~~H~~--~H~   24 (26)
T smart00355        1 YRCPECGKVFKSKSALKEHMR--THX   24 (26)
T ss_pred             CCCCCCcchhCCHHHHHHHHH--Hhc
Confidence            469999999999999999997  553

>KOG0150 consensus Spliceosomal protein FBP21 [RNA processing and modification]

Probab=87.01  E-value=0.31  Score=50.55  Aligned_cols=34  Identities=24%  Similarity=0.433  Sum_probs=28.8

Q ss_pred             CCEEeeeccccc-CcHHHHHhhhhhhhHHHHHhhh
Q 012121          219 IPLICELCNVKC-ESQVVFDSHLVGKKHLANVKRF  252 (470)
Q Consensus       219 ~~~~CeLCNV~c-nSe~~~~sHL~GKKH~kklKk~  252 (470)
                      ..+||++|.|++ +.....+.|=.||||+.+|.+.
T Consensus         9 ~kkfCdyCKiWi~dN~~Sv~~He~GkrHke~V~Kr   43 (336)
T KOG0150|consen    9 PKKFCDYCKIWIKDNPASVRFHERGKRHKENVAKR   43 (336)
T ss_pred             cchhhhhhhhhhcCChHHHHhHhhhhHHHHHHHHH
Confidence            468999999988 5677899999999999888543

>COG5246 PRP11 Splicing factor 3a, subunit 2 [RNA processing and modification]

Probab=86.18  E-value=0.55  Score=45.92  Aligned_cols=38  Identities=26%  Similarity=0.400  Sum_probs=33.8

Q ss_pred             CCcccccccccccCCHHHHHHHhcCcchHHHHHhHHhh
Q 012121           66 PPMAWCELCRVDCNTLEILEQHKNGKRHKRNLRTHADL  103 (470)
Q Consensus        66 ~~~~yC~VCnVsFnSpsqaqsHy~GKKHkKNLrkLk~~  103 (470)
                      -..+-|.+|+-.--++..+..|..||||+-|+.+....
T Consensus        51 ~Gk~vC~LC~T~H~~e~Sy~~H~~GKKH~~n~~rrs~e   88 (222)
T COG5246          51 TGKYVCLLCKTKHLTEMSYVKHREGKKHKENSSRRSEE   88 (222)
T ss_pred             CCcEEeeeeccccccHHHHHHhhccchhhhhHHHHHHH
Confidence            34567999999999999999999999999999988654

>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A

Probab=85.50  E-value=0.37  Score=38.70  Aligned_cols=32  Identities=25%  Similarity=0.443  Sum_probs=26.6

Q ss_pred             CcccccccccccCCHHHHHHHhcCcchHHHHH
Q 012121           67 PMAWCELCRVDCNTLEILEQHKNGKRHKRNLR   98 (470)
Q Consensus        67 ~~~yC~VCnVsFnSpsqaqsHy~GKKHkKNLr   98 (470)
                      ..+.|.+|++.|.+...+..|+..+.|.+...
T Consensus        49 ~~~~C~~C~~~f~s~~~l~~Hm~~~~H~~~~~   80 (100)
T PF12756_consen   49 ESFRCPYCNKTFRSREALQEHMRSKHHKKRNS   80 (100)
T ss_dssp             SSEEBSSSS-EESSHHHHHHHHHHTTTTC-S-
T ss_pred             CCCCCCccCCCCcCHHHHHHHHcCccCCCccc
Confidence            36889999999999999999999999997544

>KOG4722 consensus Zn-finger protein [General function prediction only]

Probab=84.88  E-value=0.46  Score=51.36  Aligned_cols=34  Identities=35%  Similarity=0.567  Sum_probs=31.2

Q ss_pred             CCEEeeecccccCcHHHHHhhhhhhhHHHHHhhh
Q 012121          219 IPLICELCNVKCESQVVFDSHLVGKKHLANVKRF  252 (470)
Q Consensus       219 ~~~~CeLCNV~cnSe~~~~sHL~GKKH~kklKk~  252 (470)
                      ....|.+|||-..|+.-|-+|..|+||+--|+.+
T Consensus       492 rkkqcslcnvlissevylfshvkgrkhqqal~e~  525 (672)
T KOG4722|consen  492 RKKQCSLCNVLISSEVYLFSHVKGRKHQQALNEL  525 (672)
T ss_pred             hhhccchhhhhhhhhhhhhhhhcchhHHHHHHHH
Confidence            4568999999999999999999999999988875

>KOG3792 consensus Transcription factor NFAT, subunit NF90 [General function prediction only]

Probab=84.28  E-value=0.87  Score=51.69  Aligned_cols=35  Identities=26%  Similarity=0.567  Sum_probs=30.9

Q ss_pred             CcCCEEeeecccccCcHHHHHhhhhhhhHHHHHhh
Q 012121          217 GVIPLICELCNVKCESQVVFDSHLVGKKHLANVKR  251 (470)
Q Consensus       217 ~~~~~~CeLCNV~cnSe~~~~sHL~GKKH~kklKk  251 (470)
                      ....|.|+||+..||..-.-..||+|+||.-..|+
T Consensus       356 K~~~f~cKlcdckf~d~nak~mhl~grRhrLQYk~  390 (816)
T KOG3792|consen  356 KLLRFHCKLCDCKFNDPNAKEMHLKGRRHRLQYKQ  390 (816)
T ss_pred             chHhhhhhhhcCCCCCcchHHhhhhcccccceecc
Confidence            45699999999999999999999999999766664

>PF11931 DUF3449: Domain of unknown function (DUF3449); InterPro: IPR024598 This presumed domain is functionally uncharacterised

Probab=83.39  E-value=0.35  Score=47.04  Aligned_cols=34  Identities=18%  Similarity=0.510  Sum_probs=0.0

Q ss_pred             CCEEeeecc-cccCcHHHHHhhhhhhhHHHHHhhh
Q 012121          219 IPLICELCN-VKCESQVVFDSHLVGKKHLANVKRF  252 (470)
Q Consensus       219 ~~~~CeLCN-V~cnSe~~~~sHL~GKKH~kklKk~  252 (470)
                      ..|.|+||. .++-+...|..|+...||..-|+.+
T Consensus       100 ~ey~CEICGN~~Y~GrkaFekHF~E~rH~~GlrcL  134 (196)
T PF11931_consen  100 VEYKCEICGNQSYKGRKAFEKHFQEWRHAYGLRCL  134 (196)
T ss_dssp             -----------------------------------
T ss_pred             CeeeeEeCCCcceecHHHHHHhcChhHHHccChhc
Confidence            589999997 7788999999999999999888876

It has two conserved sequence motifs: PIP and CEICG and contains a zinc-finger of the C2H2-type.; PDB: 4DGW_A.

>KOG1146 consensus Homeobox protein [General function prediction only]

Probab=82.89  E-value=2.2  Score=51.30  Aligned_cols=44  Identities=20%  Similarity=0.230  Sum_probs=36.5

Q ss_pred             CCCCCCCCcccccccccccCCHHHHHHHhcCcchHHHHHhHHhh
Q 012121           60 APTRPPPPMAWCELCRVDCNTLEILEQHKNGKRHKRNLRTHADL  103 (470)
Q Consensus        60 a~~~~p~~~~yC~VCnVsFnSpsqaqsHy~GKKHkKNLrkLk~~  103 (470)
                      +....+....-|.+|++.++....+-.|++--+|+.+++.+...
T Consensus       510 ~~~~~~~~p~~C~~C~~stttng~LsihlqS~~h~~~lee~~~~  553 (1406)
T KOG1146|consen  510 EVYRCPGKPYPCRACNYSTTTNGNLSIHLQSDLHRNELEEAEEN  553 (1406)
T ss_pred             ccccCCCCcccceeeeeeeecchHHHHHHHHHhhHHHHHHHHhc
Confidence            34456667778999999999999999999999999997766654

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=82.29  E-value=0.98  Score=28.42  Aligned_cols=21  Identities=19%  Similarity=0.412  Sum_probs=18.8

Q ss_pred             ccccccccccCCHHHHHHHhc
Q 012121           69 AWCELCRVDCNTLEILEQHKN   89 (470)
Q Consensus        69 ~yC~VCnVsFnSpsqaqsHy~   89 (470)
                      +-|..|+..|.+...|..|..
T Consensus         1 y~C~~C~~~f~~~~~l~~H~~   21 (23)
T PF00096_consen    1 YKCPICGKSFSSKSNLKRHMR   21 (23)
T ss_dssp             EEETTTTEEESSHHHHHHHHH
T ss_pred             CCCCCCCCccCCHHHHHHHHh
Confidence            359999999999999999974

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	470
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	99.64
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	98.5
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	97.59
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	97.38
3cw1_L	77	U1 small nuclear ribonucleoprotein C; PRE-mRNA spl	97.32
3cw1_L	77	U1 small nuclear ribonucleoprotein C; PRE-mRNA spl	97.19
4dgw_A	402	PRE-mRNA-splicing factor PRP9; zinc finger; 3.11A	96.47
3eph_A	409	TRNA isopentenyltransferase; transferase, alternat	95.88
2yrk_A	55	Zinc finger homeobox protein 4; structure genomics	95.51
4dgw_A	402	PRE-mRNA-splicing factor PRP9; zinc finger; 3.11A	94.66
3eph_A	409	TRNA isopentenyltransferase; transferase, alternat	92.81
1fu9_A	36	U-shaped transcriptional cofactor; zinc-finger, be	91.17
2elx_A	35	Zinc finger protein 406; ZFAT zinc finger 1, struc	89.97
2kvf_A	28	Zinc finger and BTB domain-containing protein 32;	89.94
2elv_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	89.63
2elq_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	89.51
2kvh_A	27	Zinc finger and BTB domain-containing protein 32;	89.43
2elt_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	89.39
1srk_A	35	Zinc finger protein ZFPM1; classical zinc finger,	89.38
2kvg_A	27	Zinc finger and BTB domain-containing protein 32;	88.97
1znf_A	27	31ST zinc finger from XFIN; zinc finger DNA bindin	88.82
2m0f_A	29	Zinc finger and BTB domain-containing protein 17;	88.09
2els_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	88.07
2elr_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	88.06
1fu9_A	36	U-shaped transcriptional cofactor; zinc-finger, be	87.93
1rik_A	29	E6APC1 peptide; E6-binding domain, zinc finger, hu	87.85
1ard_A	29	Yeast transcription factor ADR1; transcription reg	87.82
2m0d_A	30	Zinc finger and BTB domain-containing protein 17;	87.24
2elo_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	86.88
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	86.81
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	86.72
3mjh_B	34	Early endosome antigen 1; protein-zinc finger comp	86.52
2lvu_A	26	Zinc finger and BTB domain-containing protein 17;	86.32
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	85.88
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	85.7
2yrk_A	55	Zinc finger homeobox protein 4; structure genomics	85.7
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	85.64
2elp_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	85.63
3iuf_A	48	Zinc finger protein UBI-D4; structural genomics co	85.5
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	85.41
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	85.24
2lvr_A	30	Zinc finger and BTB domain-containing protein 17;	85.33
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	84.96
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	84.95
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	84.83
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	84.77
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	84.73
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	84.56
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	84.55
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	84.47
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	84.47
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	84.43
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	84.37
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	84.32
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	84.28
2lvt_A	29	Zinc finger and BTB domain-containing protein 17;	84.57
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	84.09
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	84.08
2kvf_A	28	Zinc finger and BTB domain-containing protein 32;	83.99
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	83.96
1rim_A	33	E6APC2 peptide; E6-binding domain, zinc finger, hu	83.92
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	83.87
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	83.78
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	83.75
1klr_A	30	Zinc finger Y-chromosomal protein; transcription;	83.66
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	83.59
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	83.59
2kvh_A	27	Zinc finger and BTB domain-containing protein 32;	83.57
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	83.55
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	83.52
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	83.38
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	83.36
2elx_A	35	Zinc finger protein 406; ZFAT zinc finger 1, struc	83.34
2emb_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	83.31
2m0e_A	29	Zinc finger and BTB domain-containing protein 17;	83.21
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	83.13
1ard_A	29	Yeast transcription factor ADR1; transcription reg	83.13
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	83.07
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	83.06
2elm_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	82.97
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	82.97
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	82.95
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	82.94
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	82.93
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	82.91
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	82.88
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	82.83
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	82.83
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	82.82
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	82.81
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	82.73
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	82.7
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	82.59
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	82.52
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	82.45
1srk_A	35	Zinc finger protein ZFPM1; classical zinc finger,	82.4
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	82.4
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	82.38
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	82.36
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	82.34
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	82.32
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	82.3
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	82.26
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	82.13
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	82.1
1yui_A	54	GAGA-factor; complex (DNA-binding protein/DNA), ch	82.07
2elr_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	82.05
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	82.02
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	82.02
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	82.0
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	81.95
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	81.93
2eoy_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	81.89
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	81.83
4f9c_B	144	Protein DBF4 homolog A; Ser/Thr protein kinase, tr	81.79
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	81.79
3mjh_B	34	Early endosome antigen 1; protein-zinc finger comp	81.73
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	81.7
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	81.67
2kvg_A	27	Zinc finger and BTB domain-containing protein 32;	81.66
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	81.64
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	81.59
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	81.58
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	81.56
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	81.55
2yrm_A	43	B-cell lymphoma 6 protein; ZF-C2H2, zinc binding,	81.52
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	81.48
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	81.45
1znf_A	27	31ST zinc finger from XFIN; zinc finger DNA bindin	81.43
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	81.4
2elq_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	81.25
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	81.18
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	81.13
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	81.11
2m0f_A	29	Zinc finger and BTB domain-containing protein 17;	81.1
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	81.1
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	80.92
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	80.76
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	80.75
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	80.75
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	80.67
2m0d_A	30	Zinc finger and BTB domain-containing protein 17;	80.62
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	80.53
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	80.35
2elv_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	80.35
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	80.35
2elt_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	80.34
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	80.31
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	80.29
2ab3_A	29	ZNF29; zinc finger protein, beta BETA alpha, RREII	80.22
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	80.18
2yso_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	80.18
1fv5_A	36	First zinc finger of U-shaped; CCHC, protein inter	80.14
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	80.1
2eou_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	80.09

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4

Probab=99.64  E-value=2.3e-16  Score=137.19  Aligned_cols=37  Identities=14%  Similarity=0.262  Sum_probs=33.9

Q ss_pred             CcccccccccccCCHHHHHHHhcCcchHHHHHhHHhh
Q 012121           67 PMAWCELCRVDCNTLEILEQHKNGKRHKRNLRTHADL  103 (470)
Q Consensus        67 ~~~yC~VCnVsFnSpsqaqsHy~GKKHkKNLrkLk~~  103 (470)
                      ..++|.+|+++|+|+.++..||.||+|+++|+.+...
T Consensus        31 ~~~~C~~C~v~~~S~s~~~~H~~gkkH~~~v~~~~~~   67 (127)
T 1zu1_A           31 SDTQCKVCSAVLISESQKLAHYQSRKHANKVRRYMAI   67 (127)
T ss_dssp             CSSEETTTTEECCSHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred             CCCcCcCCCCEeCCHHHHHHHHCcHHHHHHHHHHhcc
Confidence            4589999999999999999999999999999987653

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4

Probab=98.50  E-value=4.9e-08  Score=84.81  Aligned_cols=39  Identities=26%  Similarity=0.442  Sum_probs=35.4

Q ss_pred             CCCCCcccccccccccCCHHHHHHHhcCcchHHHHHhHH
Q 012121           63 RPPPPMAWCELCRVDCNTLEILEQHKNGKRHKRNLRTHA  101 (470)
Q Consensus        63 ~~p~~~~yC~VCnVsFnSpsqaqsHy~GKKHkKNLrkLk  101 (470)
                      ..+...+||.+|++||+|+.+|.+||.||+|++++++++
T Consensus        88 ~~~~~~~~C~~C~~~f~s~~~~~~H~~gk~H~~~~~~~~  126 (127)
T 1zu1_A           88 DGEDRSKCCPVCNMTFSSPVVAESHYIGKTHIKNLRLRE  126 (127)
T ss_dssp             SCCCTTTEETTTTEECSSHHHHHHHHTSHHHHHHHHHHH
T ss_pred             cCCCCCeEcCCCCCEeCCHHHHHHHHCCHHHHHHHHHhc
Confidence            356778999999999999999999999999999999863

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4

Probab=97.59  E-value=3.1e-05  Score=68.46  Aligned_cols=37  Identities=19%  Similarity=0.254  Sum_probs=34.7

Q ss_pred             CcCCEEeeecccccCcHHHHHhhhhhhhHHHHHhhhc
Q 012121          217 GVIPLICELCNVKCESQVVFDSHLVGKKHLANVKRFH  253 (470)
Q Consensus       217 ~~~~~~CeLCNV~cnSe~~~~sHL~GKKH~kklKk~~  253 (470)
                      ....|||.+|+..|.+...|..|+++|+|+++|+.+.
T Consensus        47 GekpfyC~~C~K~F~~~~~L~~H~rsK~HKrrvk~l~   83 (124)
T 1zr9_A           47 GGGLHRCLACARYFIDSTNLKTHFRSKDHKKRLKQLS   83 (124)
T ss_dssp             GGGCSEETTTTEECSSHHHHHHHTTCHHHHHHHHHHT
T ss_pred             CCcceEcccCcchhCCHHHHHHHHhhhhhhHHHHHhc
Confidence            4578999999999999999999999999999999975

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4

Probab=97.38  E-value=6.7e-05  Score=66.31  Aligned_cols=37  Identities=22%  Similarity=0.262  Sum_probs=34.8

Q ss_pred             CCcccccccccccCCHHHHHHHhcCcchHHHHHhHHh
Q 012121           66 PPMAWCELCRVDCNTLEILEQHKNGKRHKRNLRTHAD  102 (470)
Q Consensus        66 ~~~~yC~VCnVsFnSpsqaqsHy~GKKHkKNLrkLk~  102 (470)
                      ...+||.+|+++|.+...|..|+.+|+|+++++.+..
T Consensus        48 ekpfyC~~C~K~F~~~~~L~~H~rsK~HKrrvk~l~~   84 (124)
T 1zr9_A           48 GGLHRCLACARYFIDSTNLKTHFRSKDHKKRLKQLSV   84 (124)
T ss_dssp             GGCSEETTTTEECSSHHHHHHHTTCHHHHHHHHHHTS
T ss_pred             CcceEcccCcchhCCHHHHHHHHhhhhhhHHHHHhcc
Confidence            5789999999999999999999999999999999864

>3cw1_L U1 small nuclear ribonucleoprotein C; PRE-mRNA splicing, spliceosome, RNA-binding domain, SM fold, finger, RNA recognition motif, 5' splice site; 5.49A {Homo sapiens} PDB: 1uw2_A 2vrd_A

Probab=97.32  E-value=0.00011  Score=60.52  Aligned_cols=36  Identities=19%  Similarity=0.459  Sum_probs=32.1

Q ss_pred             ccccccccccc--CCHHHHHHHhcCcchHHHHHhHHhh
Q 012121           68 MAWCELCRVDC--NTLEILEQHKNGKRHKRNLRTHADL  103 (470)
Q Consensus        68 ~~yC~VCnVsF--nSpsqaqsHy~GKKHkKNLrkLk~~  103 (470)
                      .+||+.|++++  +|+.+..+|..|+||+.|++.+...
T Consensus         3 kYyCdYCd~~lt~Ds~s~Rk~H~~G~kH~~nv~~yy~~   40 (77)
T 3cw1_L            3 KFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDYYCK   40 (77)
T ss_pred             CcccccCCceecCCCHHHHHHHHccHHHHHHHHHHHHH
Confidence            57999999999  6889999999999999999977654

>3cw1_L U1 small nuclear ribonucleoprotein C; PRE-mRNA splicing, spliceosome, RNA-binding domain, SM fold, finger, RNA recognition motif, 5' splice site; 5.49A {Homo sapiens} PDB: 1uw2_A 2vrd_A

Probab=97.19  E-value=0.00016  Score=59.50  Aligned_cols=33  Identities=33%  Similarity=0.667  Sum_probs=29.7

Q ss_pred             CEEeeeccccc--CcHHHHHhhhhhhhHHHHHhhh
Q 012121          220 PLICELCNVKC--ESQVVFDSHLVGKKHLANVKRF  252 (470)
Q Consensus       220 ~~~CeLCNV~c--nSe~~~~sHL~GKKH~kklKk~  252 (470)
                      .|||+-|++++  +|..+.+.|++|+||+.+++..
T Consensus         3 kYyCdYCd~~lt~Ds~s~Rk~H~~G~kH~~nv~~y   37 (77)
T 3cw1_L            3 KFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDY   37 (77)
T ss_pred             CcccccCCceecCCCHHHHHHHHccHHHHHHHHHH
Confidence            69999999999  5677899999999999998776

>4dgw_A PRE-mRNA-splicing factor PRP9; zinc finger; 3.11A {Saccharomyces cerevisiae}

Probab=96.47  E-value=0.00087  Score=68.99  Aligned_cols=36  Identities=28%  Similarity=0.445  Sum_probs=32.4

Q ss_pred             CCcccccccccccCCHHHHHHHhcCcchHHHHHhHH
Q 012121           66 PPMAWCELCRVDCNTLEILEQHKNGKRHKRNLRTHA  101 (470)
Q Consensus        66 ~~~~yC~VCnVsFnSpsqaqsHy~GKKHkKNLrkLk  101 (470)
                      ....||..|+++|.++.++..|+.||||+|++.+.+
T Consensus       290 ~~~l~C~~c~K~Fs~~~v~~~hL~GKkh~K~~~~~k  325 (402)
T 4dgw_A          290 AKGIYCPFCSRWFKTSSVFESHLVGKIHKKNESKRR  325 (402)
T ss_dssp             TTEECBTTTTBCBSSHHHHHTTSSSHHHHHHHHHSH
T ss_pred             CcCeeehhhhhhhccccccHHHhcccccchhHHHHH
Confidence            457899999999999999999999999999886644

>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*

Probab=95.88  E-value=0.0035  Score=64.60  Aligned_cols=34  Identities=24%  Similarity=0.463  Sum_probs=31.4

Q ss_pred             CCEEeeeccc------ccCcHHHHHhhhhhhhHHHHHhhh
Q 012121          219 IPLICELCNV------KCESQVVFDSHLVGKKHLANVKRF  252 (470)
Q Consensus       219 ~~~~CeLCNV------~cnSe~~~~sHL~GKKH~kklKk~  252 (470)
                      ..|+|++|+.      .+.++.+++.|++|++|+++|++.
T Consensus       359 ~~~~Ce~C~~~~~~~~~~~ge~~W~~H~ksr~Hk~~~~~~  398 (409)
T 3eph_A          359 THYTCNVCRNADGKNVVAIGEKYWKIHLGSRRHKSNLKRN  398 (409)
T ss_dssp             CEEEEEEEECTTSCEEEEESHHHHHHHHTSHHHHHHHHHH
T ss_pred             cceeCCCCCCCCCCcceEEcHHHHHHHhhhhHHHHHHHHH
Confidence            4689999998      899999999999999999999876

>2yrk_A Zinc finger homeobox protein 4; structure genomics, ZF-C2H2 domain, ZFH-4, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.37.1.4

Probab=95.51  E-value=0.0036  Score=48.71  Aligned_cols=36  Identities=28%  Similarity=0.631  Sum_probs=32.5

Q ss_pred             EEeeecccccCcHHHHHhhhhhhhHHHHHhhhcccc
Q 012121          221 LICELCNVKCESQVVFDSHLVGKKHLANVKRFHGHR  256 (470)
Q Consensus       221 ~~CeLCNV~cnSe~~~~sHL~GKKH~kklKk~~g~~  256 (470)
                      ..|++|+|.++....++.|+-.+.|..+||.+-+.+
T Consensus        14 ~eC~lC~vkYs~r~slqDHIFs~qHI~~vk~~v~~q   49 (55)
T 2yrk_A           14 PECTLCGVKYSARLSIRDHIFSKQHISKVRETVGSQ   49 (55)
T ss_dssp             SCCTTTTCCCCSSSCHHHHHTSHHHHHHHHHTTCSS
T ss_pred             ccccccCcccccccchhhhhccHHHHHHHHHHHHhh
Confidence            389999999999999999999999999999875443

>4dgw_A PRE-mRNA-splicing factor PRP9; zinc finger; 3.11A {Saccharomyces cerevisiae}

Probab=94.66  E-value=0.011  Score=60.89  Aligned_cols=34  Identities=35%  Similarity=0.597  Sum_probs=31.0

Q ss_pred             CCEEeeecccccCcHHHHHhhhhhhhHHHHHhhh
Q 012121          219 IPLICELCNVKCESQVVFDSHLVGKKHLANVKRF  252 (470)
Q Consensus       219 ~~~~CeLCNV~cnSe~~~~sHL~GKKH~kklKk~  252 (470)
                      ..+||..|+..|.++.+|..||.||||.+.+.+.
T Consensus       291 ~~l~C~~c~K~Fs~~~v~~~hL~GKkh~K~~~~~  324 (402)
T 4dgw_A          291 KGIYCPFCSRWFKTSSVFESHLVGKIHKKNESKR  324 (402)
T ss_dssp             TEECBTTTTBCBSSHHHHHTTSSSHHHHHHHHHS
T ss_pred             cCeeehhhhhhhccccccHHHhcccccchhHHHH
Confidence            4799999999999999999999999999987553

>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*

Probab=92.81  E-value=0.045  Score=56.38  Aligned_cols=37  Identities=24%  Similarity=0.382  Sum_probs=32.7

Q ss_pred             ccccccccc------ccCCHHHHHHHhcCcchHHHHHhHHhhh
Q 012121           68 MAWCELCRV------DCNTLEILEQHKNGKRHKRNLRTHADLQ  104 (470)
Q Consensus        68 ~~yC~VCnV------sFnSpsqaqsHy~GKKHkKNLrkLk~~~  104 (470)
                      .++|++|+.      .+.++.+-+.|+.||+|++++++.+..+
T Consensus       360 ~~~Ce~C~~~~~~~~~~~ge~~W~~H~ksr~Hk~~~~~~~k~~  402 (409)
T 3eph_A          360 HYTCNVCRNADGKNVVAIGEKYWKIHLGSRRHKSNLKRNTRQA  402 (409)
T ss_dssp             EEEEEEEECTTSCEEEEESHHHHHHHHTSHHHHHHHHHHHHHH
T ss_pred             ceeCCCCCCCCCCcceEEcHHHHHHHhhhhHHHHHHHHHHHHH
Confidence            357999998      7999999999999999999999876553

>1fu9_A U-shaped transcriptional cofactor; zinc-finger, beta-hairpin + alpha-helix; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1jn7_A

Probab=91.17  E-value=0.098  Score=37.67  Aligned_cols=22  Identities=14%  Similarity=0.418  Sum_probs=20.4

Q ss_pred             CCEEeeecccccCcHHHHHhhh
Q 012121          219 IPLICELCNVKCESQVVFDSHL  240 (470)
Q Consensus       219 ~~~~CeLCNV~cnSe~~~~sHL  240 (470)
                      ..++|+.|+|.|++-..|..|.
T Consensus         7 ~~~~C~~C~IsF~~l~ty~aHK   28 (36)
T 1fu9_A            7 MKKYCSTCDISFNYVKTYLAHK   28 (36)
T ss_dssp             CCSEETTTTEECSSHHHHHHHH
T ss_pred             CcCeeccccceehhhHHHhhhh
Confidence            5789999999999999999995

>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=89.97  E-value=0.17  Score=31.51  Aligned_cols=23  Identities=30%  Similarity=0.532  Sum_probs=21.1

Q ss_pred             CCEEeeecccccCcHHHHHhhhh
Q 012121          219 IPLICELCNVKCESQVVFDSHLV  241 (470)
Q Consensus       219 ~~~~CeLCNV~cnSe~~~~sHL~  241 (470)
                      ..|.|.+|+..|.....|..|+.
T Consensus         6 k~~~C~~C~k~f~~~~~L~~H~~   28 (35)
T 2elx_A            6 SGYVCALCLKKFVSSIRLRSHIR   28 (35)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHH
T ss_pred             CCeECCCCcchhCCHHHHHHHHH
Confidence            46999999999999999999975

>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=89.94  E-value=0.17  Score=30.06  Aligned_cols=23  Identities=17%  Similarity=0.507  Sum_probs=20.7

Q ss_pred             CCEEeeecccccCcHHHHHhhhh
Q 012121          219 IPLICELCNVKCESQVVFDSHLV  241 (470)
Q Consensus       219 ~~~~CeLCNV~cnSe~~~~sHL~  241 (470)
                      ..|.|.+|+..|.+...|..|+.
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~   24 (28)
T 2kvf_A            2 RPYSCSVCGKRFSLKHQMETHYR   24 (28)
T ss_dssp             CSEECSSSCCEESCHHHHHHHHT
T ss_pred             cCccCCCCCcccCCHHHHHHHHH
Confidence            36899999999999999999974

>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=89.63  E-value=0.24  Score=31.39  Aligned_cols=23  Identities=22%  Similarity=0.563  Sum_probs=21.1

Q ss_pred             CCEEeeecccccCcHHHHHhhhh
Q 012121          219 IPLICELCNVKCESQVVFDSHLV  241 (470)
Q Consensus       219 ~~~~CeLCNV~cnSe~~~~sHL~  241 (470)
                      ..|.|.+|+..|.....|..|+.
T Consensus         8 k~~~C~~C~k~f~~~~~l~~H~~   30 (36)
T 2elv_A            8 LLYDCHICERKFKNELDRDRHML   30 (36)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHT
T ss_pred             CCeECCCCCCccCCHHHHHHHHH
Confidence            47999999999999999999975

>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=89.51  E-value=0.22  Score=31.51  Aligned_cols=23  Identities=26%  Similarity=0.618  Sum_probs=21.1

Q ss_pred             CCEEeeecccccCcHHHHHhhhh
Q 012121          219 IPLICELCNVKCESQVVFDSHLV  241 (470)
Q Consensus       219 ~~~~CeLCNV~cnSe~~~~sHL~  241 (470)
                      ..|.|.+|+..|.+...|..|+.
T Consensus         8 k~~~C~~C~k~f~~~~~l~~H~~   30 (36)
T 2elq_A            8 KPFKCSLCEYATRSKSNLKAHMN   30 (36)
T ss_dssp             CSEECSSSSCEESCHHHHHHHHH
T ss_pred             CCccCCCCCchhCCHHHHHHHHH
Confidence            57999999999999999999974

>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=89.43  E-value=0.2  Score=29.75  Aligned_cols=23  Identities=26%  Similarity=0.586  Sum_probs=20.7

Q ss_pred             CCEEeeecccccCcHHHHHhhhh
Q 012121          219 IPLICELCNVKCESQVVFDSHLV  241 (470)
Q Consensus       219 ~~~~CeLCNV~cnSe~~~~sHL~  241 (470)
                      ..|.|.+|+..|.....|..|+.
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~   24 (27)
T 2kvh_A            2 KPFSCSLCPQRSRDFSAMTKHLR   24 (27)
T ss_dssp             CCEECSSSSCEESSHHHHHHHHH
T ss_pred             cCccCCCcChhhCCHHHHHHHHH
Confidence            36899999999999999999974

>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=89.39  E-value=0.24  Score=31.14  Aligned_cols=23  Identities=22%  Similarity=0.473  Sum_probs=21.1

Q ss_pred             CCEEeeecccccCcHHHHHhhhh
Q 012121          219 IPLICELCNVKCESQVVFDSHLV  241 (470)
Q Consensus       219 ~~~~CeLCNV~cnSe~~~~sHL~  241 (470)
                      ..|.|.+|+..|.....|..|+.
T Consensus         8 k~~~C~~C~k~f~~~~~l~~H~~   30 (36)
T 2elt_A            8 KPYKCPQCSYASAIKANLNVHLR   30 (36)
T ss_dssp             CSEECSSSSCEESSHHHHHHHHH
T ss_pred             CCCCCCCCCcccCCHHHHHHHHH
Confidence            57999999999999999999984

>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1

Probab=89.38  E-value=0.23  Score=31.17  Aligned_cols=23  Identities=22%  Similarity=0.567  Sum_probs=21.1

Q ss_pred             CCEEeeecccccCcHHHHHhhhh
Q 012121          219 IPLICELCNVKCESQVVFDSHLV  241 (470)
Q Consensus       219 ~~~~CeLCNV~cnSe~~~~sHL~  241 (470)
                      ..|.|.+|+..|.....|..|+.
T Consensus         6 k~~~C~~C~k~f~~~~~l~~H~~   28 (35)
T 1srk_A            6 RPFVCRICLSAFTTKANCARHLK   28 (35)
T ss_dssp             SCEECSSSCCEESSHHHHHHHHG
T ss_pred             cCeeCCCCCcccCCHHHHHHHHH
Confidence            47999999999999999999974

>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=88.97  E-value=0.2  Score=30.02  Aligned_cols=23  Identities=30%  Similarity=0.743  Sum_probs=20.7

Q ss_pred             CCEEeeecccccCcHHHHHhhhh
Q 012121          219 IPLICELCNVKCESQVVFDSHLV  241 (470)
Q Consensus       219 ~~~~CeLCNV~cnSe~~~~sHL~  241 (470)
                      ..|.|.+|+..|.....|..|+.
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~   24 (27)
T 2kvg_A            2 APYRCPLCRAGCPSLASMQAHMR   24 (27)
T ss_dssp             CTEEETTTTEEESCHHHHHHHHT
T ss_pred             cCcCCCCCCcccCCHHHHHHHHH
Confidence            36899999999999999999974

>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1

Probab=88.82  E-value=0.17  Score=29.71  Aligned_cols=21  Identities=19%  Similarity=0.412  Sum_probs=19.4

Q ss_pred             EEeeecccccCcHHHHHhhhh
Q 012121          221 LICELCNVKCESQVVFDSHLV  241 (470)
Q Consensus       221 ~~CeLCNV~cnSe~~~~sHL~  241 (470)
                      |.|.+|+..|.+...|..|+.
T Consensus         2 ~~C~~C~k~f~~~~~l~~H~~   22 (27)
T 1znf_A            2 YKCGLCERSFVEKSALSRHQR   22 (27)
T ss_dssp             CBCSSSCCBCSSHHHHHHHGG
T ss_pred             ccCCCCCCcCCCHHHHHHHHH
Confidence            789999999999999999984

>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=88.09  E-value=0.23  Score=29.30  Aligned_cols=22  Identities=27%  Similarity=0.545  Sum_probs=20.2

Q ss_pred             CEEeeecccccCcHHHHHhhhh
Q 012121          220 PLICELCNVKCESQVVFDSHLV  241 (470)
Q Consensus       220 ~~~CeLCNV~cnSe~~~~sHL~  241 (470)
                      .|.|.+|+..|.....|..|+.
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~   23 (29)
T 2m0f_A            2 PLKCRECGKQFTTSGNLKRHLR   23 (29)
T ss_dssp             CEECTTTSCEESCHHHHHHHHH
T ss_pred             CccCCCCCCccCChhHHHHHHH
Confidence            5899999999999999999974

>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=88.07  E-value=0.29  Score=30.95  Aligned_cols=23  Identities=26%  Similarity=0.462  Sum_probs=21.1

Q ss_pred             CCEEeeecccccCcHHHHHhhhh
Q 012121          219 IPLICELCNVKCESQVVFDSHLV  241 (470)
Q Consensus       219 ~~~~CeLCNV~cnSe~~~~sHL~  241 (470)
                      ..|.|.+|+..|.....|..|+.
T Consensus         8 k~~~C~~C~k~f~~~~~l~~H~~   30 (36)
T 2els_A            8 KIFTCEYCNKVFKFKHSLQAHLR   30 (36)
T ss_dssp             CCEECTTTCCEESSHHHHHHHHH
T ss_pred             CCEECCCCCceeCCHHHHHHHHH
Confidence            57999999999999999999974

>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=88.06  E-value=0.26  Score=30.95  Aligned_cols=24  Identities=25%  Similarity=0.517  Sum_probs=21.4

Q ss_pred             cCCEEeeecccccCcHHHHHhhhh
Q 012121          218 VIPLICELCNVKCESQVVFDSHLV  241 (470)
Q Consensus       218 ~~~~~CeLCNV~cnSe~~~~sHL~  241 (470)
                      ...|.|.+|+..|.+...|..|+.
T Consensus         7 ~~~~~C~~C~k~f~~~~~l~~H~~   30 (36)
T 2elr_A            7 GKTHLCDMCGKKFKSKGTLKSHKL   30 (36)
T ss_dssp             CSSCBCTTTCCBCSSHHHHHHHHH
T ss_pred             CCCeecCcCCCCcCchHHHHHHHH
Confidence            357899999999999999999974

>1fu9_A U-shaped transcriptional cofactor; zinc-finger, beta-hairpin + alpha-helix; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1jn7_A

Probab=87.93  E-value=0.25  Score=35.55  Aligned_cols=23  Identities=22%  Similarity=0.479  Sum_probs=20.2

Q ss_pred             CCcccccccccccCCHHHHHHHh
Q 012121           66 PPMAWCELCRVDCNTLEILEQHK   88 (470)
Q Consensus        66 ~~~~yC~VCnVsFnSpsqaqsHy   88 (470)
                      ....+|..|+++|++-..|..|.
T Consensus         6 ~~~~~C~~C~IsF~~l~ty~aHK   28 (36)
T 1fu9_A            6 VMKKYCSTCDISFNYVKTYLAHK   28 (36)
T ss_dssp             CCCSEETTTTEECSSHHHHHHHH
T ss_pred             cCcCeeccccceehhhHHHhhhh
Confidence            35679999999999999999884

>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A

Probab=87.85  E-value=0.21  Score=29.65  Aligned_cols=22  Identities=14%  Similarity=0.353  Sum_probs=20.3

Q ss_pred             CEEeeecccccCcHHHHHhhhh
Q 012121          220 PLICELCNVKCESQVVFDSHLV  241 (470)
Q Consensus       220 ~~~CeLCNV~cnSe~~~~sHL~  241 (470)
                      .|.|.+|+..|.....|..|+.
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~   23 (29)
T 1rik_A            2 KFACPECPKRFMRSDHLTLHIL   23 (29)
T ss_dssp             CEECSSSSCEESCSHHHHHHHT
T ss_pred             CccCCCCCchhCCHHHHHHHHH
Confidence            5899999999999999999985

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A

Probab=87.82  E-value=0.18  Score=29.86  Aligned_cols=22  Identities=23%  Similarity=0.548  Sum_probs=20.2

Q ss_pred             CEEeeecccccCcHHHHHhhhh
Q 012121          220 PLICELCNVKCESQVVFDSHLV  241 (470)
Q Consensus       220 ~~~CeLCNV~cnSe~~~~sHL~  241 (470)
                      .|.|.+|+..|.....|..|+.
T Consensus         2 ~~~C~~C~~~f~~~~~l~~H~~   23 (29)
T 1ard_A            2 SFVCEVCTRAFARQEHLKRHYR   23 (29)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHH
T ss_pred             CeECCCCCcccCCHHHHHHHHH
Confidence            4789999999999999999975

>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=87.24  E-value=0.29  Score=28.94  Aligned_cols=23  Identities=22%  Similarity=0.408  Sum_probs=20.6

Q ss_pred             CCEEeeecccccCcHHHHHhhhh
Q 012121          219 IPLICELCNVKCESQVVFDSHLV  241 (470)
Q Consensus       219 ~~~~CeLCNV~cnSe~~~~sHL~  241 (470)
                      ..|.|.+|+..|.....|..|+.
T Consensus         2 k~~~C~~C~~~f~~~~~l~~H~~   24 (30)
T 2m0d_A            2 KPYQCDYCGRSFSDPTSKMRHLE   24 (30)
T ss_dssp             CCEECTTTCCEESCHHHHHHHHH
T ss_pred             cCccCCCCCcccCCHHHHHHHHH
Confidence            36899999999999999999974

>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=86.88  E-value=0.28  Score=31.09  Aligned_cols=23  Identities=17%  Similarity=0.449  Sum_probs=21.1

Q ss_pred             CCEEeeecccccCcHHHHHhhhh
Q 012121          219 IPLICELCNVKCESQVVFDSHLV  241 (470)
Q Consensus       219 ~~~~CeLCNV~cnSe~~~~sHL~  241 (470)
                      ..|.|.+|+..|.....|..|+.
T Consensus         8 k~~~C~~C~k~f~~~~~l~~H~~   30 (37)
T 2elo_A            8 RSYSCPVCEKSFSEDRLIKSHIK   30 (37)
T ss_dssp             CCCEETTTTEECSSHHHHHHHHH
T ss_pred             CCcCCCCCCCccCCHHHHHHHHH
Confidence            46899999999999999999975

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A

Probab=86.81  E-value=0.34  Score=31.41  Aligned_cols=23  Identities=17%  Similarity=0.463  Sum_probs=21.1

Q ss_pred             CCEEeeecccccCcHHHHHhhhh
Q 012121          219 IPLICELCNVKCESQVVFDSHLV  241 (470)
Q Consensus       219 ~~~~CeLCNV~cnSe~~~~sHL~  241 (470)
                      ..|.|.+|+..|.+...|..|+.
T Consensus         5 k~~~C~~C~k~f~~~~~L~~H~~   27 (39)
T 1njq_A            5 RSYTCSFCKREFRSAQALGGHMN   27 (39)
T ss_dssp             SSEECTTTCCEESSHHHHHHHHH
T ss_pred             CceECCCCCcccCCHHHHHHHHH
Confidence            47999999999999999999974

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A

Probab=86.72  E-value=0.28  Score=31.14  Aligned_cols=23  Identities=17%  Similarity=0.300  Sum_probs=20.9

Q ss_pred             CCEEeeecccccCcHHHHHhhhh
Q 012121          219 IPLICELCNVKCESQVVFDSHLV  241 (470)
Q Consensus       219 ~~~~CeLCNV~cnSe~~~~sHL~  241 (470)
                      ..|.|.+|+..|.....|..|+.
T Consensus        10 k~~~C~~C~k~f~~~~~l~~H~~   32 (37)
T 1p7a_A           10 KPFQCPDCDRSFSRSDHLALHRK   32 (37)
T ss_dssp             SSBCCTTTCCCBSSHHHHHHHHG
T ss_pred             CCccCCCCCcccCcHHHHHHHHH
Confidence            46899999999999999999974

>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}

Probab=86.52  E-value=0.31  Score=34.45  Aligned_cols=23  Identities=17%  Similarity=0.219  Sum_probs=21.0

Q ss_pred             CCcccccccccccCCHHHHHHHh
Q 012121           66 PPMAWCELCRVDCNTLEILEQHK   88 (470)
Q Consensus        66 ~~~~yC~VCnVsFnSpsqaqsHy   88 (470)
                      ...+.|.+|.+.|.+..+|..||
T Consensus         3 ~EGFiCP~C~~~l~s~~~L~~Hy   25 (34)
T 3mjh_B            3 SEGFICPQCMKSLGSADELFKHY   25 (34)
T ss_dssp             SEEEECTTTCCEESSHHHHHHHH
T ss_pred             CcccCCcHHHHHcCCHHHHHHHH
Confidence            34688999999999999999999

>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=86.32  E-value=0.14  Score=30.16  Aligned_cols=22  Identities=23%  Similarity=0.623  Sum_probs=20.0

Q ss_pred             CEEeeecccccCcHHHHHhhhh
Q 012121          220 PLICELCNVKCESQVVFDSHLV  241 (470)
Q Consensus       220 ~~~CeLCNV~cnSe~~~~sHL~  241 (470)
                      .|.|.+|+..|.....|..|+.
T Consensus         2 p~~C~~C~k~f~~~~~l~~H~~   23 (26)
T 2lvu_A            2 PYVCERCGKRFVQSSQLANHIR   23 (26)
Confidence            4789999999999999999974

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=85.88  E-value=0.43  Score=31.80  Aligned_cols=23  Identities=17%  Similarity=0.235  Sum_probs=21.1

Q ss_pred             CCEEeeecccccCcHHHHHhhhh
Q 012121          219 IPLICELCNVKCESQVVFDSHLV  241 (470)
Q Consensus       219 ~~~~CeLCNV~cnSe~~~~sHL~  241 (470)
                      ..|.|.+|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~   33 (44)
T 2epv_A           11 KPYECNECGKAFIWKSLLIVHER   33 (44)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHG
T ss_pred             cCeECCCCCcccCchHHHHHHHh
Confidence            47999999999999999999975

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A

Probab=85.70  E-value=0.46  Score=31.03  Aligned_cols=23  Identities=22%  Similarity=0.300  Sum_probs=21.0

Q ss_pred             CCEEeeecccccCcHHHHHhhhh
Q 012121          219 IPLICELCNVKCESQVVFDSHLV  241 (470)
Q Consensus       219 ~~~~CeLCNV~cnSe~~~~sHL~  241 (470)
                      ..|.|.+|+..|.+...|..|+.
T Consensus         9 k~~~C~~C~k~f~~~~~L~~H~~   31 (42)
T 2el5_A            9 NPYECSECGKAFNRKDQLISHQR   31 (42)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHG
T ss_pred             CCccCCCcChhhCCHHHHHHHHH
Confidence            47999999999999999999974

>2yrk_A Zinc finger homeobox protein 4; structure genomics, ZF-C2H2 domain, ZFH-4, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.37.1.4

Probab=85.70  E-value=0.37  Score=37.57  Aligned_cols=33  Identities=24%  Similarity=0.412  Sum_probs=30.2

Q ss_pred             ccccccccccCCHHHHHHHhcCcchHHHHHhHH
Q 012121           69 AWCELCRVDCNTLEILEQHKNGKRHKRNLRTHA  101 (470)
Q Consensus        69 ~yC~VCnVsFnSpsqaqsHy~GKKHkKNLrkLk  101 (470)
                      --|.+|++.|+....++.|+--+.|..+|+.+-
T Consensus        14 ~eC~lC~vkYs~r~slqDHIFs~qHI~~vk~~v   46 (55)
T 2yrk_A           14 PECTLCGVKYSARLSIRDHIFSKQHISKVRETV   46 (55)
T ss_dssp             SCCTTTTCCCCSSSCHHHHHTSHHHHHHHHHTT
T ss_pred             ccccccCcccccccchhhhhccHHHHHHHHHHH
Confidence            379999999999999999999999999998654

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A

Probab=85.64  E-value=0.45  Score=30.99  Aligned_cols=23  Identities=17%  Similarity=0.419  Sum_probs=21.0

Q ss_pred             CCEEeeecccccCcHHHHHhhhh
Q 012121          219 IPLICELCNVKCESQVVFDSHLV  241 (470)
Q Consensus       219 ~~~~CeLCNV~cnSe~~~~sHL~  241 (470)
                      ..|.|.+|+..|.....|..|+.
T Consensus        10 ~~~~C~~C~k~f~~~~~l~~H~~   32 (42)
T 2epc_A           10 TPYLCGQCGKSFTQRGSLAVHQR   32 (42)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHH
T ss_pred             CCeECCCCCcccCCHHHHHHHhh
Confidence            46999999999999999999974

>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=85.63  E-value=0.37  Score=30.63  Aligned_cols=23  Identities=13%  Similarity=0.353  Sum_probs=20.8

Q ss_pred             CCEEeeecccccCcH-HHHHhhhh
Q 012121          219 IPLICELCNVKCESQ-VVFDSHLV  241 (470)
Q Consensus       219 ~~~~CeLCNV~cnSe-~~~~sHL~  241 (470)
                      ..|.|.+|+..|... ..|..|+.
T Consensus         8 k~~~C~~C~k~f~~~~~~L~~H~~   31 (37)
T 2elp_A            8 RAMKCPYCDFYFMKNGSDLQRHIW   31 (37)
T ss_dssp             CCEECSSSSCEECSSCHHHHHHHH
T ss_pred             CCeECCCCChhhccCHHHHHHHHH
Confidence            469999999999999 99999974

>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}

Probab=85.50  E-value=0.4  Score=33.17  Aligned_cols=23  Identities=17%  Similarity=0.570  Sum_probs=21.0

Q ss_pred             CCEEeeecccccCcHHHHHhhhh
Q 012121          219 IPLICELCNVKCESQVVFDSHLV  241 (470)
Q Consensus       219 ~~~~CeLCNV~cnSe~~~~sHL~  241 (470)
                      ..|.|.+|+..|.....|..|+.
T Consensus         6 kp~~C~~C~k~F~~~~~L~~H~~   28 (48)
T 3iuf_A            6 KPYACDICGKRYKNRPGLSYHYA   28 (48)
T ss_dssp             SCEECTTTCCEESSHHHHHHHHH
T ss_pred             cCEECCCcCcccCCHHHHHHHhh
Confidence            57999999999999999999974

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=85.41  E-value=0.49  Score=30.83  Aligned_cols=23  Identities=13%  Similarity=0.174  Sum_probs=21.1

Q ss_pred             CCEEeeecccccCcHHHHHhhhh
Q 012121          219 IPLICELCNVKCESQVVFDSHLV  241 (470)
Q Consensus       219 ~~~~CeLCNV~cnSe~~~~sHL~  241 (470)
                      ..|.|.+|+..|.....|..|+.
T Consensus         9 k~~~C~~C~k~f~~~~~L~~H~~   31 (41)
T 2ept_A            9 RVYECQECGKSFRQKGSLTLHER   31 (41)
T ss_dssp             CCEECSSSCCEESSHHHHHHHGG
T ss_pred             CCeECCCCCCCcCCHHHHHHHHH
Confidence            47999999999999999999974

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=85.24  E-value=0.5  Score=31.57  Aligned_cols=23  Identities=17%  Similarity=0.452  Sum_probs=21.1

Q ss_pred             CCEEeeecccccCcHHHHHhhhh
Q 012121          219 IPLICELCNVKCESQVVFDSHLV  241 (470)
Q Consensus       219 ~~~~CeLCNV~cnSe~~~~sHL~  241 (470)
                      ..|.|.+|+..|.....|..|+.
T Consensus        11 ~~~~C~~C~k~F~~~~~L~~H~~   33 (46)
T 2em3_A           11 KPYECKVCSKAFTQKAHLAQHQK   33 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHH
T ss_pred             cCeECCCCCcccCCHHHHHHHHH
Confidence            46999999999999999999984

>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}

Probab=85.33  E-value=0.17  Score=30.19  Aligned_cols=22  Identities=18%  Similarity=0.517  Sum_probs=20.2

Q ss_pred             CEEeeecccccCcHHHHHhhhh
Q 012121          220 PLICELCNVKCESQVVFDSHLV  241 (470)
Q Consensus       220 ~~~CeLCNV~cnSe~~~~sHL~  241 (470)
                      .|.|.+|+..|.....|..|+.
T Consensus         3 ~~~C~~C~k~f~~~~~l~~H~~   24 (30)
T 2lvr_A            3 PYVCIHCQRQFADPGALQRHVR   24 (30)
Confidence            5899999999999999999974

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=84.96  E-value=0.53  Score=31.33  Aligned_cols=23  Identities=22%  Similarity=0.442  Sum_probs=21.2

Q ss_pred             CCEEeeecccccCcHHHHHhhhh
Q 012121          219 IPLICELCNVKCESQVVFDSHLV  241 (470)
Q Consensus       219 ~~~~CeLCNV~cnSe~~~~sHL~  241 (470)
                      ..|.|.+|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2yts_A           11 KPYICNECGKSFIQKSHLNRHRR   33 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHGG
T ss_pred             cCEECCCCChhhCChHHHHHHHH
Confidence            47999999999999999999984

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=84.95  E-value=0.74  Score=31.29  Aligned_cols=24  Identities=17%  Similarity=0.389  Sum_probs=21.7

Q ss_pred             cCCEEeeecccccCcHHHHHhhhh
Q 012121          218 VIPLICELCNVKCESQVVFDSHLV  241 (470)
Q Consensus       218 ~~~~~CeLCNV~cnSe~~~~sHL~  241 (470)
                      ...|.|.+|+..|.....|..|+.
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~   33 (48)
T 2epr_A           10 RKQVACEICGKIFRDVYHLNRHKL   33 (48)
T ss_dssp             CCSEEETTTTEEESSHHHHHHHGG
T ss_pred             CcCeeCCCCCcccCCHHHHHHHHH
Confidence            357999999999999999999984

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=84.83  E-value=0.5  Score=31.56  Aligned_cols=23  Identities=17%  Similarity=0.353  Sum_probs=21.2

Q ss_pred             CCEEeeecccccCcHHHHHhhhh
Q 012121          219 IPLICELCNVKCESQVVFDSHLV  241 (470)
Q Consensus       219 ~~~~CeLCNV~cnSe~~~~sHL~  241 (470)
                      ..|.|.+|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~   33 (45)
T 2epu_A           11 KPFECTHCGKSFRAKGNLVTHQR   33 (45)
T ss_dssp             CSEEETTTTEEESSHHHHHHHHT
T ss_pred             cCccCCCCCCccCChHHHHHHHH
Confidence            57999999999999999999974

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=84.77  E-value=0.56  Score=31.32  Aligned_cols=23  Identities=13%  Similarity=0.193  Sum_probs=21.1

Q ss_pred             CCEEeeecccccCcHHHHHhhhh
Q 012121          219 IPLICELCNVKCESQVVFDSHLV  241 (470)
Q Consensus       219 ~~~~CeLCNV~cnSe~~~~sHL~  241 (470)
                      ..|.|.+|+..|.....|..|+.
T Consensus        11 ~~~~C~~C~k~F~~~~~L~~H~~   33 (46)
T 2emi_A           11 RHYECSECGKAFIQKSTLSMHQR   33 (46)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHG
T ss_pred             CCCCCCCCCcccCCHHHHHHHHh
Confidence            46999999999999999999975

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=84.73  E-value=0.54  Score=31.40  Aligned_cols=23  Identities=17%  Similarity=0.309  Sum_probs=21.1

Q ss_pred             CCEEeeecccccCcHHHHHhhhh
Q 012121          219 IPLICELCNVKCESQVVFDSHLV  241 (470)
Q Consensus       219 ~~~~CeLCNV~cnSe~~~~sHL~  241 (470)
                      ..|.|.+|+..|.+...|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2ep3_A           11 KPYRCAECGKAFTDRSNLFTHQK   33 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHT
T ss_pred             CCeECCCCCchhCCHHHHHHHHH
Confidence            47999999999999999999974

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=84.56  E-value=0.55  Score=31.47  Aligned_cols=23  Identities=17%  Similarity=0.299  Sum_probs=21.1

Q ss_pred             CCEEeeecccccCcHHHHHhhhh
Q 012121          219 IPLICELCNVKCESQVVFDSHLV  241 (470)
Q Consensus       219 ~~~~CeLCNV~cnSe~~~~sHL~  241 (470)
                      ..|.|.+|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2yto_A           11 KPYKCSDCGKAFTRKSGLHIHQQ   33 (46)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHH
T ss_pred             CCEECcccCCccCCHhHHHHHHH
Confidence            46999999999999999999974

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=84.55  E-value=0.47  Score=30.99  Aligned_cols=23  Identities=22%  Similarity=0.557  Sum_probs=21.2

Q ss_pred             CCEEeeecccccCcHHHHHhhhh
Q 012121          219 IPLICELCNVKCESQVVFDSHLV  241 (470)
Q Consensus       219 ~~~~CeLCNV~cnSe~~~~sHL~  241 (470)
                      ..|.|.+|+..|.....|..|+.
T Consensus        10 k~~~C~~C~k~f~~~~~L~~H~~   32 (42)
T 2en2_A           10 KPYKCETCGARFVQVAHLRAHVL   32 (42)
T ss_dssp             CSEECTTTCCEESSHHHHHHHTH
T ss_pred             CCEeCCCcChhhCCHHHHHHHHH
Confidence            47999999999999999999985

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A

Probab=84.47  E-value=0.53  Score=31.57  Aligned_cols=23  Identities=17%  Similarity=0.359  Sum_probs=21.1

Q ss_pred             CCEEeeecccccCcHHHHHhhhh
Q 012121          219 IPLICELCNVKCESQVVFDSHLV  241 (470)
Q Consensus       219 ~~~~CeLCNV~cnSe~~~~sHL~  241 (470)
                      ..|.|.+|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~   33 (46)
T 2emj_A           11 KPFECAECGKSFSISSQLATHQR   33 (46)
T ss_dssp             CSEECSSSSCEESSHHHHHHHHH
T ss_pred             CCEECCCCCcccCCHHHHHHHHH
Confidence            47999999999999999999974

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=84.47  E-value=0.45  Score=32.00  Aligned_cols=23  Identities=17%  Similarity=0.384  Sum_probs=21.2

Q ss_pred             CCEEeeecccccCcHHHHHhhhh
Q 012121          219 IPLICELCNVKCESQVVFDSHLV  241 (470)
Q Consensus       219 ~~~~CeLCNV~cnSe~~~~sHL~  241 (470)
                      ..|.|.+|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2eon_A           11 KPYKCQVCGKAFRVSSHLVQHHS   33 (46)
T ss_dssp             CSCBCSSSCCBCSSHHHHHHHTT
T ss_pred             cccCCCCCCcccCcHHHHHHHHH
Confidence            46899999999999999999985

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=84.43  E-value=0.53  Score=31.34  Aligned_cols=23  Identities=17%  Similarity=0.352  Sum_probs=21.1

Q ss_pred             CCEEeeecccccCcHHHHHhhhh
Q 012121          219 IPLICELCNVKCESQVVFDSHLV  241 (470)
Q Consensus       219 ~~~~CeLCNV~cnSe~~~~sHL~  241 (470)
                      ..|.|.+|+..|.....|..|+.
T Consensus        11 ~~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2yrj_A           11 KPYRCGECGKAFAQKANLTQHQR   33 (46)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHT
T ss_pred             CCeECCCCCCccCCHHHHHHHHH
Confidence            46999999999999999999974

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=84.37  E-value=0.44  Score=31.25  Aligned_cols=23  Identities=30%  Similarity=0.644  Sum_probs=21.1

Q ss_pred             CCEEeeecccccCcHHHHHhhhh
Q 012121          219 IPLICELCNVKCESQVVFDSHLV  241 (470)
Q Consensus       219 ~~~~CeLCNV~cnSe~~~~sHL~  241 (470)
                      ..|.|.+|+..|.....|..|+.
T Consensus        10 k~~~C~~C~k~f~~~~~L~~H~~   32 (42)
T 2eos_A           10 KPYPCEICGTRFRHLQTLKSHLR   32 (42)
T ss_dssp             CCBCCSSSCCCBSSHHHHHHHTT
T ss_pred             CCEECCCCCCccCCHHHHHHHHH
Confidence            46899999999999999999975

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=84.32  E-value=0.54  Score=31.28  Aligned_cols=23  Identities=17%  Similarity=0.339  Sum_probs=21.0

Q ss_pred             CCEEeeecccccCcHHHHHhhhh
Q 012121          219 IPLICELCNVKCESQVVFDSHLV  241 (470)
Q Consensus       219 ~~~~CeLCNV~cnSe~~~~sHL~  241 (470)
                      ..|.|.+|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2ytf_A           11 KPFECSECQKAFNTKSNLIVHQR   33 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHH
T ss_pred             CCcCCCCCCcccCCHHHHHHHHH
Confidence            47999999999999999999974

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=84.28  E-value=0.46  Score=31.75  Aligned_cols=23  Identities=22%  Similarity=0.446  Sum_probs=21.0

Q ss_pred             CCEEeeecccccCcHHHHHhhhh
Q 012121          219 IPLICELCNVKCESQVVFDSHLV  241 (470)
Q Consensus       219 ~~~~CeLCNV~cnSe~~~~sHL~  241 (470)
                      ..|.|.+|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~   33 (46)
T 2en3_A           11 KPFQCKECGMNFSWSCSLFKHLR   33 (46)
T ss_dssp             CSEECSSSCCEESSSHHHHHHHH
T ss_pred             CCeeCcccChhhCCHHHHHHHHH
Confidence            46999999999999999999983

>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=84.57  E-value=0.2  Score=29.99  Aligned_cols=22  Identities=18%  Similarity=0.434  Sum_probs=20.0

Q ss_pred             CEEeeecccccCcHHHHHhhhh
Q 012121          220 PLICELCNVKCESQVVFDSHLV  241 (470)
Q Consensus       220 ~~~CeLCNV~cnSe~~~~sHL~  241 (470)
                      .|.|.+|+..|.....|..|+.
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~   23 (29)
T 2lvt_A            2 PCQCVMCGKAFTQASSLIAHVR   23 (29)
Confidence            4789999999999999999974

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=84.09  E-value=0.53  Score=30.91  Aligned_cols=23  Identities=17%  Similarity=0.332  Sum_probs=21.1

Q ss_pred             CCEEeeecccccCcHHHHHhhhh
Q 012121          219 IPLICELCNVKCESQVVFDSHLV  241 (470)
Q Consensus       219 ~~~~CeLCNV~cnSe~~~~sHL~  241 (470)
                      ..|.|.+|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (44)
T 2eof_A           11 KPYECNECQKAFNTKSNLMVHQR   33 (44)
T ss_dssp             CSEECTTTCCEESCHHHHHHHHH
T ss_pred             CCeECCCCCcccCCHhHHHHHHH
Confidence            46999999999999999999984

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=84.08  E-value=0.65  Score=31.11  Aligned_cols=23  Identities=13%  Similarity=0.258  Sum_probs=21.1

Q ss_pred             CCEEeeecccccCcHHHHHhhhh
Q 012121          219 IPLICELCNVKCESQVVFDSHLV  241 (470)
Q Consensus       219 ~~~~CeLCNV~cnSe~~~~sHL~  241 (470)
                      ..|.|.+|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~   33 (46)
T 2emf_A           11 KHFECTECGKAFTRKSTLSMHQK   33 (46)
T ss_dssp             CCEECSSSCCEESCHHHHHHHGG
T ss_pred             CCeECCCCCchhCCHHHHHHHHH
Confidence            46999999999999999999985

>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=83.99  E-value=0.65  Score=27.41  Aligned_cols=22  Identities=18%  Similarity=0.303  Sum_probs=19.4

Q ss_pred             cccccccccccCCHHHHHHHhc
Q 012121           68 MAWCELCRVDCNTLEILEQHKN   89 (470)
Q Consensus        68 ~~yC~VCnVsFnSpsqaqsHy~   89 (470)
                      .+-|.+|.+.|.....|..|..
T Consensus         3 ~~~C~~C~k~f~~~~~l~~H~~   24 (28)
T 2kvf_A            3 PYSCSVCGKRFSLKHQMETHYR   24 (28)
T ss_dssp             SEECSSSCCEESCHHHHHHHHT
T ss_pred             CccCCCCCcccCCHHHHHHHHH
Confidence            4669999999999999999964

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=83.96  E-value=0.54  Score=31.29  Aligned_cols=23  Identities=22%  Similarity=0.364  Sum_probs=21.1

Q ss_pred             CCEEeeecccccCcHHHHHhhhh
Q 012121          219 IPLICELCNVKCESQVVFDSHLV  241 (470)
Q Consensus       219 ~~~~CeLCNV~cnSe~~~~sHL~  241 (470)
                      ..|.|.+|+..|.....|..|+.
T Consensus        11 ~~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2eor_A           11 KPYNCEECGKAFIHDSQLQEHQR   33 (46)
T ss_dssp             CSEECTTTCCEESSHHHHHHHHH
T ss_pred             cCccCCCCCCCcCCHHHHHHHHH
Confidence            46999999999999999999974

>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1

Probab=83.92  E-value=0.38  Score=30.45  Aligned_cols=22  Identities=14%  Similarity=0.366  Sum_probs=20.1

Q ss_pred             CEEeeecccccCcHHHHHhhhh
Q 012121          220 PLICELCNVKCESQVVFDSHLV  241 (470)
Q Consensus       220 ~~~CeLCNV~cnSe~~~~sHL~  241 (470)
                      .|.|.+|+..|.....|..|+.
T Consensus         2 p~~C~~C~k~F~~~~~L~~H~~   23 (33)
T 1rim_A            2 KFACPECPKRFMRSDHLSKHIT   23 (33)
T ss_dssp             CCCCSSSCCCCSSHHHHHHHHH
T ss_pred             cccCCCCCchhCCHHHHHHHHH
Confidence            4789999999999999999984

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=83.87  E-value=0.43  Score=31.08  Aligned_cols=23  Identities=17%  Similarity=0.310  Sum_probs=20.9

Q ss_pred             CCEEeeecccccCcHHHHHhhhh
Q 012121          219 IPLICELCNVKCESQVVFDSHLV  241 (470)
Q Consensus       219 ~~~~CeLCNV~cnSe~~~~sHL~  241 (470)
                      ..|.|.+|+..|.....|..|+.
T Consensus         9 k~~~C~~C~k~f~~~~~L~~H~~   31 (42)
T 2yte_A            9 KPYSCAECKETFSDNNRLVQHQK   31 (42)
T ss_dssp             CSCBCTTTCCBCSSHHHHHHHHH
T ss_pred             CCeECCCCCCccCCHHHHHHHHH
Confidence            46899999999999999999975

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=83.78  E-value=0.63  Score=31.17  Aligned_cols=23  Identities=17%  Similarity=0.288  Sum_probs=21.1

Q ss_pred             CCEEeeecccccCcHHHHHhhhh
Q 012121          219 IPLICELCNVKCESQVVFDSHLV  241 (470)
Q Consensus       219 ~~~~CeLCNV~cnSe~~~~sHL~  241 (470)
                      ..|.|.+|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2em4_A           11 RPYECIECGKAFKTKSSLICHRR   33 (46)
T ss_dssp             SSEECSSSCCEESSHHHHHHHHH
T ss_pred             cCcCCCCCCCccCCHHHHHHHHH
Confidence            47999999999999999999974

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=83.75  E-value=0.62  Score=31.22  Aligned_cols=23  Identities=13%  Similarity=0.164  Sum_probs=21.2

Q ss_pred             CCEEeeecccccCcHHHHHhhhh
Q 012121          219 IPLICELCNVKCESQVVFDSHLV  241 (470)
Q Consensus       219 ~~~~CeLCNV~cnSe~~~~sHL~  241 (470)
                      ..|.|.+|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~   33 (46)
T 2ytp_A           11 RHYECSECGKAFARKSTLIMHQR   33 (46)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHT
T ss_pred             CCeECCcCCcccCCHHHHHHHHH
Confidence            46999999999999999999985

>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A

Probab=83.66  E-value=0.33  Score=28.64  Aligned_cols=22  Identities=14%  Similarity=0.535  Sum_probs=20.0

Q ss_pred             CEEeeecccccCcHHHHHhhhh
Q 012121          220 PLICELCNVKCESQVVFDSHLV  241 (470)
Q Consensus       220 ~~~CeLCNV~cnSe~~~~sHL~  241 (470)
                      .|.|.+|+..|.....|..|+.
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~   23 (30)
T 1klr_A            2 TYQCQYCEFRSADSSNLKTHIK   23 (30)
T ss_dssp             CCCCSSSSCCCSCSHHHHHHHH
T ss_pred             CccCCCCCCccCCHHHHHHHHH
Confidence            4789999999999999999975

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=83.59  E-value=0.66  Score=30.98  Aligned_cols=23  Identities=22%  Similarity=0.358  Sum_probs=21.1

Q ss_pred             CCEEeeecccccCcHHHHHhhhh
Q 012121          219 IPLICELCNVKCESQVVFDSHLV  241 (470)
Q Consensus       219 ~~~~CeLCNV~cnSe~~~~sHL~  241 (470)
                      ..|.|.+|+..|.+...|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2ytj_A           11 KPYICAECGKAFTIRSNLIKHQK   33 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHH
T ss_pred             cCeECCCCChhhCCHHHHHHHHH
Confidence            46999999999999999999974

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=83.59  E-value=0.53  Score=31.04  Aligned_cols=23  Identities=22%  Similarity=0.242  Sum_probs=21.0

Q ss_pred             CCEEeeecccccCcHHHHHhhhh
Q 012121          219 IPLICELCNVKCESQVVFDSHLV  241 (470)
Q Consensus       219 ~~~~CeLCNV~cnSe~~~~sHL~  241 (470)
                      ..|.|.+|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (44)
T 2eoj_A           11 NPYECCECGKVFSRKDQLVSHQK   33 (44)
T ss_dssp             CSCEETTTTEECSSHHHHHHHHT
T ss_pred             cCeeCCCCCCccCCHHHHHHHHH
Confidence            46899999999999999999975

>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=83.57  E-value=0.65  Score=27.39  Aligned_cols=21  Identities=19%  Similarity=0.420  Sum_probs=19.0

Q ss_pred             cccccccccccCCHHHHHHHh
Q 012121           68 MAWCELCRVDCNTLEILEQHK   88 (470)
Q Consensus        68 ~~yC~VCnVsFnSpsqaqsHy   88 (470)
                      .+-|.+|...|.....|..|.
T Consensus         3 ~~~C~~C~k~f~~~~~l~~H~   23 (27)
T 2kvh_A            3 PFSCSLCPQRSRDFSAMTKHL   23 (27)
T ss_dssp             CEECSSSSCEESSHHHHHHHH
T ss_pred             CccCCCcChhhCCHHHHHHHH
Confidence            467999999999999999986

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=83.55  E-value=0.69  Score=30.88  Aligned_cols=23  Identities=17%  Similarity=0.410  Sum_probs=21.2

Q ss_pred             CCEEeeecccccCcHHHHHhhhh
Q 012121          219 IPLICELCNVKCESQVVFDSHLV  241 (470)
Q Consensus       219 ~~~~CeLCNV~cnSe~~~~sHL~  241 (470)
                      ..|.|.+|+..|.+...|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2eml_A           11 KPYECSVCGKAFSHRQSLSVHQR   33 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHG
T ss_pred             CCeeCCCcCCccCCHHHHHHHHH
Confidence            46999999999999999999985

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=83.52  E-value=0.61  Score=31.22  Aligned_cols=23  Identities=22%  Similarity=0.488  Sum_probs=21.0

Q ss_pred             CCEEeeecccccCcHHHHHhhhh
Q 012121          219 IPLICELCNVKCESQVVFDSHLV  241 (470)
Q Consensus       219 ~~~~CeLCNV~cnSe~~~~sHL~  241 (470)
                      ..|.|.+|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2eoz_A           11 KPYSCNVCGKAFVLSAHLNQHLR   33 (46)
T ss_dssp             CSEEETTTTEEESSHHHHHHHHH
T ss_pred             CCeECcccChhhCCHHHHHHHHH
Confidence            47999999999999999999974

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=83.38  E-value=0.65  Score=30.87  Aligned_cols=23  Identities=17%  Similarity=0.416  Sum_probs=21.1

Q ss_pred             CCEEeeecccccCcHHHHHhhhh
Q 012121          219 IPLICELCNVKCESQVVFDSHLV  241 (470)
Q Consensus       219 ~~~~CeLCNV~cnSe~~~~sHL~  241 (470)
                      ..|.|.+|+..|.+...|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2eme_A           11 KPYVCDYCGKAFGLSAELVRHQR   33 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHG
T ss_pred             CCeECCCCChhhCCHHHHHHHHH
Confidence            46999999999999999999984

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=83.36  E-value=0.63  Score=31.06  Aligned_cols=23  Identities=22%  Similarity=0.319  Sum_probs=21.1

Q ss_pred             CCEEeeecccccCcHHHHHhhhh
Q 012121          219 IPLICELCNVKCESQVVFDSHLV  241 (470)
Q Consensus       219 ~~~~CeLCNV~cnSe~~~~sHL~  241 (470)
                      ..|.|.+|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~   33 (46)
T 2emy_A           11 NPYECHECGKAFSRKYQLISHQR   33 (46)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHH
T ss_pred             cCcCCCCCCcccCcHHHHHHHHH
Confidence            46999999999999999999975

>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=83.34  E-value=0.64  Score=28.79  Aligned_cols=22  Identities=23%  Similarity=0.236  Sum_probs=19.7

Q ss_pred             CcccccccccccCCHHHHHHHh
Q 012121           67 PMAWCELCRVDCNTLEILEQHK   88 (470)
Q Consensus        67 ~~~yC~VCnVsFnSpsqaqsHy   88 (470)
                      ..+.|.+|...|.....|..|.
T Consensus         6 k~~~C~~C~k~f~~~~~L~~H~   27 (35)
T 2elx_A            6 SGYVCALCLKKFVSSIRLRSHI   27 (35)
T ss_dssp             CSEECSSSCCEESSHHHHHHHH
T ss_pred             CCeECCCCcchhCCHHHHHHHH
Confidence            4577999999999999999996

>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=83.31  E-value=0.61  Score=30.84  Aligned_cols=23  Identities=13%  Similarity=0.193  Sum_probs=21.1

Q ss_pred             CCEEeeecccccCcHHHHHhhhh
Q 012121          219 IPLICELCNVKCESQVVFDSHLV  241 (470)
Q Consensus       219 ~~~~CeLCNV~cnSe~~~~sHL~  241 (470)
                      ..|.|.+|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (44)
T 2emb_A           11 KRYECSKCQATFNLRKHLIQHQK   33 (44)
T ss_dssp             SSEECTTTCCEESCHHHHHHHGG
T ss_pred             CCeECCCCCCccCCHHHHHHHHH
Confidence            46999999999999999999984

>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=83.21  E-value=0.34  Score=28.35  Aligned_cols=22  Identities=23%  Similarity=0.380  Sum_probs=19.9

Q ss_pred             CEEeeecccccCcHHHHHhhhh
Q 012121          220 PLICELCNVKCESQVVFDSHLV  241 (470)
Q Consensus       220 ~~~CeLCNV~cnSe~~~~sHL~  241 (470)
                      .|.|..|+..|.....|..|+.
T Consensus         2 ~~~C~~C~~~f~~~~~l~~H~~   23 (29)
T 2m0e_A            2 EHKCPHCDKKFNQVGNLKAHLK   23 (29)
T ss_dssp             CCCCSSCCCCCCTTTHHHHHHH
T ss_pred             CCcCCCCCcccCCHHHHHHHHH
Confidence            4789999999999999999984

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=83.13  E-value=0.65  Score=31.00  Aligned_cols=23  Identities=17%  Similarity=0.416  Sum_probs=21.3

Q ss_pred             CCEEeeecccccCcHHHHHhhhh
Q 012121          219 IPLICELCNVKCESQVVFDSHLV  241 (470)
Q Consensus       219 ~~~~CeLCNV~cnSe~~~~sHL~  241 (470)
                      ..|.|.+|+..|.....|..|+.
T Consensus        11 ~~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2ep0_A           11 KPYKCDVCHKSFRYGSSLTVHQR   33 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHT
T ss_pred             CCeeCcccCcccCChHHHHHHHH
Confidence            57999999999999999999975

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A

Probab=83.13  E-value=0.73  Score=27.07  Aligned_cols=21  Identities=29%  Similarity=0.457  Sum_probs=18.8

Q ss_pred             cccccccccccCCHHHHHHHh
Q 012121           68 MAWCELCRVDCNTLEILEQHK   88 (470)
Q Consensus        68 ~~yC~VCnVsFnSpsqaqsHy   88 (470)
                      .+-|.+|...|.....|..|.
T Consensus         2 ~~~C~~C~~~f~~~~~l~~H~   22 (29)
T 1ard_A            2 SFVCEVCTRAFARQEHLKRHY   22 (29)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHH
T ss_pred             CeECCCCCcccCCHHHHHHHH
Confidence            357999999999999999996

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=83.07  E-value=0.7  Score=30.83  Aligned_cols=23  Identities=17%  Similarity=0.437  Sum_probs=21.2

Q ss_pred             CCEEeeecccccCcHHHHHhhhh
Q 012121          219 IPLICELCNVKCESQVVFDSHLV  241 (470)
Q Consensus       219 ~~~~CeLCNV~cnSe~~~~sHL~  241 (470)
                      ..|.|.+|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2ep2_A           11 KPYECSICGKSFTKKSQLHVHQQ   33 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHH
T ss_pred             cCcCCCCCCcccCCHHHHHHHHH
Confidence            47999999999999999999984

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=83.06  E-value=1  Score=34.90  Aligned_cols=24  Identities=17%  Similarity=0.285  Sum_probs=19.8

Q ss_pred             cCCEEeeecccccCcHHHHHhhhh
Q 012121          218 VIPLICELCNVKCESQVVFDSHLV  241 (470)
Q Consensus       218 ~~~~~CeLCNV~cnSe~~~~sHL~  241 (470)
                      ...|.|.+|+..|.+...|..|+.
T Consensus        15 ~~~~~C~~C~~~f~~~~~l~~H~~   38 (106)
T 2ee8_A           15 KKEFICKFCGRHFTKSYNLLIHER   38 (106)
T ss_dssp             CCCCBCSSSCCBCSSHHHHHHHHH
T ss_pred             CcCeECCCCCCccCCHHHHHHHHH
Confidence            356889999999999988888874

>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=82.97  E-value=0.52  Score=30.34  Aligned_cols=22  Identities=14%  Similarity=0.394  Sum_probs=20.2

Q ss_pred             CCEEeeecccccCcHHHHHhh-h
Q 012121          219 IPLICELCNVKCESQVVFDSH-L  240 (470)
Q Consensus       219 ~~~~CeLCNV~cnSe~~~~sH-L  240 (470)
                      ..|.|..|+..|.....|..| +
T Consensus         8 k~~~C~~C~k~f~~~~~L~~H~~   30 (37)
T 2elm_A            8 HLYYCSQCHYSSITKNCLKRHVI   30 (37)
T ss_dssp             CEEECSSSSCEEECHHHHHHHHH
T ss_pred             cCeECCCCCcccCCHHHHHHHHH
Confidence            469999999999999999999 5

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=82.97  E-value=0.49  Score=30.78  Aligned_cols=23  Identities=17%  Similarity=0.382  Sum_probs=21.1

Q ss_pred             CCEEeeecccccCcHHHHHhhhh
Q 012121          219 IPLICELCNVKCESQVVFDSHLV  241 (470)
Q Consensus       219 ~~~~CeLCNV~cnSe~~~~sHL~  241 (470)
                      ..|.|.+|+..|.....|..|+.
T Consensus        10 k~~~C~~C~k~f~~~~~L~~H~~   32 (42)
T 2ytb_A           10 KPYRCDQCGKAFSQKGSLIVHIR   32 (42)
T ss_dssp             CSBCCTTTTCCBSSHHHHHTTGG
T ss_pred             CCeeCCCccchhCCHHHHHHHHH
Confidence            46899999999999999999984

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=82.95  E-value=0.67  Score=31.04  Aligned_cols=23  Identities=13%  Similarity=0.215  Sum_probs=21.1

Q ss_pred             CCEEeeecccccCcHHHHHhhhh
Q 012121          219 IPLICELCNVKCESQVVFDSHLV  241 (470)
Q Consensus       219 ~~~~CeLCNV~cnSe~~~~sHL~  241 (470)
                      ..|.|.+|+..|.+...|..|+.
T Consensus        11 ~~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2em5_A           11 KSHQCHECGRGFTLKSHLNQHQR   33 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHT
T ss_pred             CCeECCcCCCccCCHHHHHHHHH
Confidence            46999999999999999999984

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A

Probab=82.94  E-value=0.72  Score=30.67  Aligned_cols=23  Identities=17%  Similarity=0.242  Sum_probs=21.1

Q ss_pred             CCEEeeecccccCcHHHHHhhhh
Q 012121          219 IPLICELCNVKCESQVVFDSHLV  241 (470)
Q Consensus       219 ~~~~CeLCNV~cnSe~~~~sHL~  241 (470)
                      ..|.|.+|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2el4_A           11 KPYGCSQCAKTFSLKSQLIVHQR   33 (46)
T ss_dssp             CSEECSSSSCEESSHHHHHHHGG
T ss_pred             CceECCCCCchhCCHHHHHHHHH
Confidence            46999999999999999999984

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=82.93  E-value=0.6  Score=30.86  Aligned_cols=23  Identities=17%  Similarity=0.324  Sum_probs=21.1

Q ss_pred             CCEEeeecccccCcHHHHHhhhh
Q 012121          219 IPLICELCNVKCESQVVFDSHLV  241 (470)
Q Consensus       219 ~~~~CeLCNV~cnSe~~~~sHL~  241 (470)
                      ..|.|.+|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (44)
T 2yu5_A           11 NPFKCSKCDRVFTQRNYLVQHER   33 (44)
T ss_dssp             CSEECSSSSCEESSSHHHHHHHH
T ss_pred             CCeECCCCCchhCCHHHHHHHhH
Confidence            46999999999999999999974

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=82.91  E-value=0.48  Score=31.64  Aligned_cols=23  Identities=22%  Similarity=0.371  Sum_probs=21.1

Q ss_pred             CCEEeeecccccCcHHHHHhhhh
Q 012121          219 IPLICELCNVKCESQVVFDSHLV  241 (470)
Q Consensus       219 ~~~~CeLCNV~cnSe~~~~sHL~  241 (470)
                      ..|.|.+|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2emg_A           11 NPFICSECGKVFTHKTNLIIHQK   33 (46)
T ss_dssp             CSCBCTTTCCBCSSHHHHHHHHT
T ss_pred             CCEECCccCcccCCHHHHHHHHH
Confidence            46899999999999999999985

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=82.88  E-value=0.6  Score=31.08  Aligned_cols=23  Identities=17%  Similarity=0.398  Sum_probs=21.1

Q ss_pred             CCEEeeecccccCcHHHHHhhhh
Q 012121          219 IPLICELCNVKCESQVVFDSHLV  241 (470)
Q Consensus       219 ~~~~CeLCNV~cnSe~~~~sHL~  241 (470)
                      ..|.|.+|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2eow_A           11 KPYKCNECGKAFRARSSLAIHQA   33 (46)
T ss_dssp             CCEECTTSCCEESSHHHHHHHHH
T ss_pred             CCeeccccCChhcCHHHHHHHHH
Confidence            46999999999999999999984

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=82.83  E-value=0.78  Score=30.60  Aligned_cols=23  Identities=22%  Similarity=0.355  Sum_probs=21.2

Q ss_pred             CCEEeeecccccCcHHHHHhhhh
Q 012121          219 IPLICELCNVKCESQVVFDSHLV  241 (470)
Q Consensus       219 ~~~~CeLCNV~cnSe~~~~sHL~  241 (470)
                      ..|.|.+|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2em7_A           11 KPYKCEECGKGFICRRDLYTHHM   33 (46)
T ss_dssp             CSEECSSSCCEESCHHHHHHHGG
T ss_pred             cCccCCCccchhCCHHHHHHHHH
Confidence            47999999999999999999975

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=82.83  E-value=0.55  Score=31.36  Aligned_cols=23  Identities=17%  Similarity=0.261  Sum_probs=21.0

Q ss_pred             CCEEeeecccccCcHHHHHhhhh
Q 012121          219 IPLICELCNVKCESQVVFDSHLV  241 (470)
Q Consensus       219 ~~~~CeLCNV~cnSe~~~~sHL~  241 (470)
                      ..|.|.+|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~   33 (46)
T 2enf_A           11 KPYKCNECGKVFTQNSHLVRHRG   33 (46)
T ss_dssp             CSCBCSSSCCBCSSHHHHHHHHT
T ss_pred             cCeECCCCCcccCCHHHHHHHHH
Confidence            46899999999999999999974

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=82.82  E-value=0.68  Score=31.00  Aligned_cols=23  Identities=26%  Similarity=0.560  Sum_probs=21.1

Q ss_pred             CCEEeeecccccCcHHHHHhhhh
Q 012121          219 IPLICELCNVKCESQVVFDSHLV  241 (470)
Q Consensus       219 ~~~~CeLCNV~cnSe~~~~sHL~  241 (470)
                      ..|.|.+|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2em2_A           11 KPFKCKECGKAFRQNIHLASHLR   33 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHH
T ss_pred             CCEECCcCCchhCCHHHHHHHHH
Confidence            47999999999999999999974

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=82.81  E-value=0.69  Score=30.86  Aligned_cols=23  Identities=17%  Similarity=0.352  Sum_probs=21.2

Q ss_pred             CCEEeeecccccCcHHHHHhhhh
Q 012121          219 IPLICELCNVKCESQVVFDSHLV  241 (470)
Q Consensus       219 ~~~~CeLCNV~cnSe~~~~sHL~  241 (470)
                      ..|.|.+|+..|.+...|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2ene_A           11 KPYKCNECGKVFRHNSYLSRHQR   33 (46)
T ss_dssp             SSEECSSSCCEESSHHHHHHHHT
T ss_pred             CCeECCCCCchhCChHHHHHHHh
Confidence            47999999999999999999985

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=82.73  E-value=0.51  Score=31.25  Aligned_cols=23  Identities=13%  Similarity=0.212  Sum_probs=21.1

Q ss_pred             CCEEeeecccccCcHHHHHhhhh
Q 012121          219 IPLICELCNVKCESQVVFDSHLV  241 (470)
Q Consensus       219 ~~~~CeLCNV~cnSe~~~~sHL~  241 (470)
                      ..|.|.+|+..|.....|..|+.
T Consensus        11 ~~~~C~~C~k~F~~~~~L~~H~~   33 (44)
T 2eox_A           11 KSYNCNECGKAFTRIFHLTRHQK   33 (44)
T ss_dssp             CCEEETTTTEEESSSHHHHTTHH
T ss_pred             CCeECcccCcccCCHHHHHHHHH
Confidence            46999999999999999999974

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=82.70  E-value=0.5  Score=31.70  Aligned_cols=23  Identities=13%  Similarity=0.244  Sum_probs=21.1

Q ss_pred             CCEEeeecccccCcHHHHHhhhh
Q 012121          219 IPLICELCNVKCESQVVFDSHLV  241 (470)
Q Consensus       219 ~~~~CeLCNV~cnSe~~~~sHL~  241 (470)
                      ..|.|.+|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~   33 (46)
T 2en9_A           11 KLFKCNECKKTFTQSSSLTVHQR   33 (46)
T ss_dssp             CCCBCTTTCCBCSSHHHHHHHHH
T ss_pred             CCEECCccCcccCCHHHHHHHHH
Confidence            46899999999999999999975

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=82.59  E-value=0.53  Score=31.57  Aligned_cols=23  Identities=17%  Similarity=0.273  Sum_probs=20.9

Q ss_pred             CCEEeeecccccCcHHHHHhhhh
Q 012121          219 IPLICELCNVKCESQVVFDSHLV  241 (470)
Q Consensus       219 ~~~~CeLCNV~cnSe~~~~sHL~  241 (470)
                      ..|.|.+|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2eoh_A           11 KPYECKECRKTFIQIGHLNQHKR   33 (46)
T ss_dssp             CSCCCSSSCCCCSSHHHHHHHHH
T ss_pred             CCcCCCCcCchhCCHHHHHHHHH
Confidence            46899999999999999999974

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=82.52  E-value=0.63  Score=31.18  Aligned_cols=23  Identities=26%  Similarity=0.505  Sum_probs=21.0

Q ss_pred             CCEEeeecccccCcHHHHHhhhh
Q 012121          219 IPLICELCNVKCESQVVFDSHLV  241 (470)
Q Consensus       219 ~~~~CeLCNV~cnSe~~~~sHL~  241 (470)
                      ..|.|.+|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2yth_A           11 KPFQCEECGKRFTQNSHLHSHQR   33 (46)
T ss_dssp             SSBCCSSSCCCBSSHHHHHHHGG
T ss_pred             cCCCCCCCCcccCCHHHHHHHHH
Confidence            46899999999999999999984

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=82.45  E-value=0.57  Score=31.18  Aligned_cols=23  Identities=17%  Similarity=0.294  Sum_probs=21.1

Q ss_pred             CCEEeeecccccCcHHHHHhhhh
Q 012121          219 IPLICELCNVKCESQVVFDSHLV  241 (470)
Q Consensus       219 ~~~~CeLCNV~cnSe~~~~sHL~  241 (470)
                      ..|.|.+|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2ep1_A           11 KPYECSDCGKSFIKKSQLHVHQR   33 (46)
T ss_dssp             CSSCCSSSCCCCSSHHHHHHHHG
T ss_pred             CCcCCCCCCchhCCHHHHHHHHH
Confidence            46899999999999999999985

>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1

Probab=82.40  E-value=0.76  Score=28.66  Aligned_cols=23  Identities=17%  Similarity=0.241  Sum_probs=20.2

Q ss_pred             CcccccccccccCCHHHHHHHhc
Q 012121           67 PMAWCELCRVDCNTLEILEQHKN   89 (470)
Q Consensus        67 ~~~yC~VCnVsFnSpsqaqsHy~   89 (470)
                      ..+-|.+|...|.....|..|..
T Consensus         6 k~~~C~~C~k~f~~~~~l~~H~~   28 (35)
T 1srk_A            6 RPFVCRICLSAFTTKANCARHLK   28 (35)
T ss_dssp             SCEECSSSCCEESSHHHHHHHHG
T ss_pred             cCeeCCCCCcccCCHHHHHHHHH
Confidence            45779999999999999999963

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=82.40  E-value=0.54  Score=31.60  Aligned_cols=23  Identities=17%  Similarity=0.070  Sum_probs=21.0

Q ss_pred             CCEEeeecccccCcHHHHHhhhh
Q 012121          219 IPLICELCNVKCESQVVFDSHLV  241 (470)
Q Consensus       219 ~~~~CeLCNV~cnSe~~~~sHL~  241 (470)
                      ..|.|.+|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~   33 (46)
T 2eom_A           11 RGHRCSDCGKFFLQASNFIQHRR   33 (46)
T ss_dssp             SSCCCSSSCCCCSSHHHHHHHHH
T ss_pred             CCcCCCCCCCeeCChHHHHHHHH
Confidence            46899999999999999999974

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=82.38  E-value=0.55  Score=31.26  Aligned_cols=23  Identities=17%  Similarity=0.426  Sum_probs=21.0

Q ss_pred             CCEEeeecccccCcHHHHHhhhh
Q 012121          219 IPLICELCNVKCESQVVFDSHLV  241 (470)
Q Consensus       219 ~~~~CeLCNV~cnSe~~~~sHL~  241 (470)
                      ..|.|.+|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2eq3_A           11 KPYECNQCGKAFSVRSSLTTHQA   33 (46)
T ss_dssp             CSSEETTTTEECSSHHHHHHHHT
T ss_pred             CCeECCCCChhhCCHHHHHHHHH
Confidence            46899999999999999999974

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=82.36  E-value=0.78  Score=30.30  Aligned_cols=23  Identities=22%  Similarity=0.355  Sum_probs=21.1

Q ss_pred             CCEEeeecccccCcHHHHHhhhh
Q 012121          219 IPLICELCNVKCESQVVFDSHLV  241 (470)
Q Consensus       219 ~~~~CeLCNV~cnSe~~~~sHL~  241 (470)
                      ..|.|.+|+..|.....|..|+.
T Consensus         9 k~~~C~~C~k~f~~~~~L~~H~~   31 (44)
T 2emx_A            9 KPFGCSCCEKAFSSKSYLLVHQQ   31 (44)
T ss_dssp             CCEECSSSSCEESSHHHHHHHHH
T ss_pred             cCccCCCCCcccCCHHHHHHHHH
Confidence            47999999999999999999974

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=82.34  E-value=0.78  Score=30.49  Aligned_cols=23  Identities=17%  Similarity=0.247  Sum_probs=21.1

Q ss_pred             CCEEeeecccccCcHHHHHhhhh
Q 012121          219 IPLICELCNVKCESQVVFDSHLV  241 (470)
Q Consensus       219 ~~~~CeLCNV~cnSe~~~~sHL~  241 (470)
                      ..|.|.+|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2emm_A           11 RPHKCNECGKSFIQSAHLIQHQR   33 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHH
T ss_pred             CCeeCCCCChhhCCHHHHHHHHH
Confidence            47999999999999999999974

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=82.32  E-value=0.74  Score=30.71  Aligned_cols=23  Identities=17%  Similarity=0.359  Sum_probs=21.2

Q ss_pred             CCEEeeecccccCcHHHHHhhhh
Q 012121          219 IPLICELCNVKCESQVVFDSHLV  241 (470)
Q Consensus       219 ~~~~CeLCNV~cnSe~~~~sHL~  241 (470)
                      ..|.|.+|+..|.....|..|+.
T Consensus        11 ~~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2ytk_A           11 KPYKCNECGKVFTQNSHLTNHWR   33 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHH
T ss_pred             CCEeCCcCCCccCCHHHHHHHHH
Confidence            47999999999999999999984

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=82.30  E-value=0.73  Score=30.73  Aligned_cols=23  Identities=26%  Similarity=0.509  Sum_probs=21.1

Q ss_pred             CCEEeeecccccCcHHHHHhhhh
Q 012121          219 IPLICELCNVKCESQVVFDSHLV  241 (470)
Q Consensus       219 ~~~~CeLCNV~cnSe~~~~sHL~  241 (470)
                      ..|.|.+|+..|.....|..|+.
T Consensus        11 ~~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2en1_A           11 KPFKCEECGKRFTQNSQLHSHQR   33 (46)
T ss_dssp             CSEEETTTTEEESSHHHHHHHGG
T ss_pred             CCeeCCCCCcccCCHHHHHHHHH
Confidence            46999999999999999999984

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=82.26  E-value=0.64  Score=30.91  Aligned_cols=23  Identities=17%  Similarity=0.267  Sum_probs=20.9

Q ss_pred             CCEEeeecccccCcHHHHHhhhh
Q 012121          219 IPLICELCNVKCESQVVFDSHLV  241 (470)
Q Consensus       219 ~~~~CeLCNV~cnSe~~~~sHL~  241 (470)
                      ..|.|.+|+..|.+...|..|+.
T Consensus        11 ~~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2eov_A           11 KPYKCSDCGKSFTWKSRLRIHQK   33 (46)
T ss_dssp             CSCBCSSSCCBCSSHHHHHHHHH
T ss_pred             CCccCCccChhhCCHHHHHHHHH
Confidence            46899999999999999999974

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A

Probab=82.13  E-value=0.89  Score=28.69  Aligned_cols=22  Identities=18%  Similarity=0.276  Sum_probs=19.8

Q ss_pred             CcccccccccccCCHHHHHHHh
Q 012121           67 PMAWCELCRVDCNTLEILEQHK   88 (470)
Q Consensus        67 ~~~yC~VCnVsFnSpsqaqsHy   88 (470)
                      ..+.|.+|+..|.....|..|.
T Consensus        10 k~~~C~~C~k~f~~~~~l~~H~   31 (37)
T 1p7a_A           10 KPFQCPDCDRSFSRSDHLALHR   31 (37)
T ss_dssp             SSBCCTTTCCCBSSHHHHHHHH
T ss_pred             CCccCCCCCcccCcHHHHHHHH
Confidence            4577999999999999999996

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=82.10  E-value=0.75  Score=30.68  Aligned_cols=23  Identities=30%  Similarity=0.515  Sum_probs=21.2

Q ss_pred             CCEEeeecccccCcHHHHHhhhh
Q 012121          219 IPLICELCNVKCESQVVFDSHLV  241 (470)
Q Consensus       219 ~~~~CeLCNV~cnSe~~~~sHL~  241 (470)
                      ..|.|.+|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2ysp_A           11 KPYKCEKCGKGYNSKFNLDMHQK   33 (46)
T ss_dssp             CSEEETTTTEEESCHHHHHHHHT
T ss_pred             CCeECCCCCCccCCHHHHHHHHH
Confidence            47999999999999999999975

>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*

Probab=82.07  E-value=0.65  Score=32.49  Aligned_cols=23  Identities=22%  Similarity=0.455  Sum_probs=21.0

Q ss_pred             CCEEeeecccccCcHHHHHhhhh
Q 012121          219 IPLICELCNVKCESQVVFDSHLV  241 (470)
Q Consensus       219 ~~~~CeLCNV~cnSe~~~~sHL~  241 (470)
                      ..|.|.+|+..|.....|..|+.
T Consensus        23 k~~~C~~C~k~f~~~~~L~~H~~   45 (54)
T 1yui_A           23 QPATCPICYAVIRQSRNLRRHLE   45 (54)
T ss_dssp             CCEECTTTCCEESSHHHHHHHHH
T ss_pred             CCccCCCCCcccCCHHHHHHHHH
Confidence            46999999999999999999974

>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=82.05  E-value=0.86  Score=28.46  Aligned_cols=22  Identities=23%  Similarity=0.549  Sum_probs=19.6

Q ss_pred             CcccccccccccCCHHHHHHHh
Q 012121           67 PMAWCELCRVDCNTLEILEQHK   88 (470)
Q Consensus        67 ~~~yC~VCnVsFnSpsqaqsHy   88 (470)
                      ..+-|.+|...|.....|..|.
T Consensus         8 ~~~~C~~C~k~f~~~~~l~~H~   29 (36)
T 2elr_A            8 KTHLCDMCGKKFKSKGTLKSHK   29 (36)
T ss_dssp             SSCBCTTTCCBCSSHHHHHHHH
T ss_pred             CCeecCcCCCCcCchHHHHHHH
Confidence            4567999999999999999986

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=82.02  E-value=0.77  Score=30.74  Aligned_cols=23  Identities=22%  Similarity=0.385  Sum_probs=21.3

Q ss_pred             CCEEeeecccccCcHHHHHhhhh
Q 012121          219 IPLICELCNVKCESQVVFDSHLV  241 (470)
Q Consensus       219 ~~~~CeLCNV~cnSe~~~~sHL~  241 (470)
                      ..|.|.+|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2em8_A           11 KPYKCVECGKGYKRRLDLDFHQR   33 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHH
T ss_pred             CCeECcccCchhCCHHHHHHHHH
Confidence            57999999999999999999985

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=82.02  E-value=1.9  Score=31.75  Aligned_cols=24  Identities=17%  Similarity=0.273  Sum_probs=20.8

Q ss_pred             CCCcccccccccccCCHHHHHHHh
Q 012121           65 PPPMAWCELCRVDCNTLEILEQHK   88 (470)
Q Consensus        65 p~~~~yC~VCnVsFnSpsqaqsHy   88 (470)
                      ....+.|.+|+..|.+...|..|.
T Consensus        15 ~~~~~~C~~C~~~f~~~~~l~~H~   38 (77)
T 2cot_A           15 ERRRYKCDECGKSFSHSSDLSKHR   38 (77)
T ss_dssp             CSCSSBCSSSCCBCSCHHHHHHHH
T ss_pred             CCCCEECCCCCcccCCHHHHHHHH
Confidence            356678999999999999999885

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}

Probab=82.00  E-value=0.83  Score=30.56  Aligned_cols=23  Identities=17%  Similarity=0.351  Sum_probs=21.2

Q ss_pred             CCEEeeecccccCcHHHHHhhhh
Q 012121          219 IPLICELCNVKCESQVVFDSHLV  241 (470)
Q Consensus       219 ~~~~CeLCNV~cnSe~~~~sHL~  241 (470)
                      ..|.|.+|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2el6_A           11 NPYKCSQCEKSFSGKLRLLVHQR   33 (46)
T ss_dssp             CSEECSSSSCEESSHHHHHHHHG
T ss_pred             CCeECCCCCcccCCHHHHHHHHH
Confidence            47999999999999999999975

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=81.95  E-value=0.62  Score=31.11  Aligned_cols=23  Identities=17%  Similarity=0.346  Sum_probs=21.0

Q ss_pred             CCEEeeecccccCcHHHHHhhhh
Q 012121          219 IPLICELCNVKCESQVVFDSHLV  241 (470)
Q Consensus       219 ~~~~CeLCNV~cnSe~~~~sHL~  241 (470)
                      ..|.|.+|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2eq2_A           11 KPYQCNECGKAFSQTSKLARHQR   33 (46)
T ss_dssp             CSSSCCSSCCCCSSHHHHHHHGG
T ss_pred             CCeECCCCCcccCCHHHHHHHHH
Confidence            46899999999999999999984

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A

Probab=81.93  E-value=0.83  Score=30.35  Aligned_cols=23  Identities=17%  Similarity=0.270  Sum_probs=21.1

Q ss_pred             CCEEeeecccccCcHHHHHhhhh
Q 012121          219 IPLICELCNVKCESQVVFDSHLV  241 (470)
Q Consensus       219 ~~~~CeLCNV~cnSe~~~~sHL~  241 (470)
                      ..|.|.+|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2em9_A           11 KPYNCKECGKSFRWASCLLKHQR   33 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHGG
T ss_pred             cCeECCccccccCChHHHHHHHH
Confidence            47999999999999999999974

>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=81.89  E-value=0.65  Score=31.11  Aligned_cols=23  Identities=13%  Similarity=0.235  Sum_probs=21.0

Q ss_pred             CCEEeeecccccCcHHHHHhhhh
Q 012121          219 IPLICELCNVKCESQVVFDSHLV  241 (470)
Q Consensus       219 ~~~~CeLCNV~cnSe~~~~sHL~  241 (470)
                      ..|.|.+|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2eoy_A           11 KCFKCNKCEKTFSCSKYLTQHER   33 (46)
T ss_dssp             CCEECSSSCCEESSSHHHHHHHT
T ss_pred             CCEECcCCCCcCCCHHHHHHHHH
Confidence            46999999999999999999974

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=81.83  E-value=0.66  Score=31.07  Aligned_cols=23  Identities=13%  Similarity=0.345  Sum_probs=20.9

Q ss_pred             CCEEeeecccccCcHHHHHhhhh
Q 012121          219 IPLICELCNVKCESQVVFDSHLV  241 (470)
Q Consensus       219 ~~~~CeLCNV~cnSe~~~~sHL~  241 (470)
                      ..|.|.+|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2em6_A           11 KCYKCDVCGKEFSQSSHLQTHQR   33 (46)
T ss_dssp             CCCBCSSSCCBCSSHHHHHHHHT
T ss_pred             CCeECCCCCcccCCHHHHHHHHH
Confidence            46899999999999999999974

>4f9c_B Protein DBF4 homolog A; Ser/Thr protein kinase, transferase, phosphorylation, cell C cell division, mitosis, S phase; HET: 0SX; 2.08A {Homo sapiens} PDB: 4f99_B* 4f9b_B* 4f9a_B*

Probab=81.79  E-value=0.49  Score=42.38  Aligned_cols=28  Identities=29%  Similarity=0.534  Sum_probs=23.6

Q ss_pred             CEEeeecccccCcHHHHHhhhhhhhHHHHHh
Q 012121          220 PLICELCNVKCESQVVFDSHLVGKKHLANVK  250 (470)
Q Consensus       220 ~~~CeLCNV~cnSe~~~~sHL~GKKH~kklK  250 (470)
                      .=||++|.+.|..   |..|+.+++|.+-++
T Consensus        87 ~GyCE~C~~~y~~---l~~H~~s~~Hr~fa~  114 (144)
T 4f9c_B           87 KGYCECCLQKYED---LETHLLSEQHRNFAQ  114 (144)
T ss_dssp             -CEETTTTEECSC---HHHHHHSHHHHHHHT
T ss_pred             CCCccchhhhhhh---HHHHcCCHHHHHHHh
Confidence            3499999999995   789999999987663

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=81.79  E-value=0.77  Score=30.71  Aligned_cols=23  Identities=22%  Similarity=0.355  Sum_probs=21.1

Q ss_pred             CCEEeeecccccCcHHHHHhhhh
Q 012121          219 IPLICELCNVKCESQVVFDSHLV  241 (470)
Q Consensus       219 ~~~~CeLCNV~cnSe~~~~sHL~  241 (470)
                      ..|.|++|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~   33 (46)
T 2eoo_A           11 RPYGCNECGKNFGRHSHLIEHLK   33 (46)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHH
T ss_pred             CCEEccccCcccCCHHHHHHHHH
Confidence            46999999999999999999974

>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}

Probab=81.73  E-value=0.6  Score=33.00  Aligned_cols=25  Identities=24%  Similarity=0.309  Sum_probs=22.2

Q ss_pred             CEEeeecccccCcHHHHHhhhhhhhH
Q 012121          220 PLICELCNVKCESQVVFDSHLVGKKH  245 (470)
Q Consensus       220 ~~~CeLCNV~cnSe~~~~sHL~GKKH  245 (470)
                      .|.|-+|-+.|.+..+|..|+ .++|
T Consensus         5 GFiCP~C~~~l~s~~~L~~Hy-e~~H   29 (34)
T 3mjh_B            5 GFICPQCMKSLGSADELFKHY-EAVH   29 (34)
T ss_dssp             EEECTTTCCEESSHHHHHHHH-HHHT
T ss_pred             ccCCcHHHHHcCCHHHHHHHH-Hhcc
Confidence            599999999999999999999 4455

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=81.70  E-value=0.54  Score=30.88  Aligned_cols=23  Identities=22%  Similarity=0.411  Sum_probs=21.0

Q ss_pred             CCEEeeecccccCcHHHHHhhhh
Q 012121          219 IPLICELCNVKCESQVVFDSHLV  241 (470)
Q Consensus       219 ~~~~CeLCNV~cnSe~~~~sHL~  241 (470)
                      ..|.|.+|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (44)
T 2en7_A           11 KPYVCNECGKAFRSKSYLIIHTR   33 (44)
T ss_dssp             SSSCCTTTCCCCSSHHHHHHHHT
T ss_pred             cCeECCCCCCccCCHHHHHHHhh
Confidence            46899999999999999999984

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=81.67  E-value=0.79  Score=30.55  Aligned_cols=23  Identities=22%  Similarity=0.485  Sum_probs=21.1

Q ss_pred             CCEEeeecccccCcHHHHHhhhh
Q 012121          219 IPLICELCNVKCESQVVFDSHLV  241 (470)
Q Consensus       219 ~~~~CeLCNV~cnSe~~~~sHL~  241 (470)
                      ..|.|.+|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2emp_A           11 KPYMCNECGKAFSVYSSLTTHQV   33 (46)
T ss_dssp             CSEECSSSCCEESCHHHHHHHHH
T ss_pred             cCeECCCCCchhCCHHHHHHHHH
Confidence            46999999999999999999984

>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=81.66  E-value=0.84  Score=27.17  Aligned_cols=22  Identities=32%  Similarity=0.738  Sum_probs=19.4

Q ss_pred             cccccccccccCCHHHHHHHhc
Q 012121           68 MAWCELCRVDCNTLEILEQHKN   89 (470)
Q Consensus        68 ~~yC~VCnVsFnSpsqaqsHy~   89 (470)
                      .+-|.+|...|.....|..|..
T Consensus         3 ~~~C~~C~k~f~~~~~l~~H~~   24 (27)
T 2kvg_A            3 PYRCPLCRAGCPSLASMQAHMR   24 (27)
T ss_dssp             TEEETTTTEEESCHHHHHHHHT
T ss_pred             CcCCCCCCcccCCHHHHHHHHH
Confidence            4679999999999999999963

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=81.64  E-value=0.8  Score=30.54  Aligned_cols=23  Identities=17%  Similarity=0.391  Sum_probs=21.1

Q ss_pred             CCEEeeecccccCcHHHHHhhhh
Q 012121          219 IPLICELCNVKCESQVVFDSHLV  241 (470)
Q Consensus       219 ~~~~CeLCNV~cnSe~~~~sHL~  241 (470)
                      ..|.|.+|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2ytd_A           11 KPYKCSECGKAFHRHTHLNEHRR   33 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHH
T ss_pred             cCeECCCCCCeeCChHHHHHHHH
Confidence            46999999999999999999974

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=81.59  E-value=0.53  Score=31.55  Aligned_cols=23  Identities=17%  Similarity=0.473  Sum_probs=21.1

Q ss_pred             CCEEeeecccccCcHHHHHhhhh
Q 012121          219 IPLICELCNVKCESQVVFDSHLV  241 (470)
Q Consensus       219 ~~~~CeLCNV~cnSe~~~~sHL~  241 (470)
                      ..|.|.+|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~   33 (46)
T 2enh_A           11 KPYECDVCRKAFSHHASLTQHQR   33 (46)
T ss_dssp             SSCBCTTTCCBCSSSHHHHHHGG
T ss_pred             CCcCCCCcCchhCCHHHHHHHHH
Confidence            46899999999999999999975

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=81.58  E-value=0.7  Score=30.82  Aligned_cols=23  Identities=17%  Similarity=0.375  Sum_probs=21.2

Q ss_pred             CCEEeeecccccCcHHHHHhhhh
Q 012121          219 IPLICELCNVKCESQVVFDSHLV  241 (470)
Q Consensus       219 ~~~~CeLCNV~cnSe~~~~sHL~  241 (470)
                      ..|.|.+|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~   33 (46)
T 2eq0_A           11 KPYKCHECGKVFRRNSHLARHQL   33 (46)
T ss_dssp             CCEECTTTCCEESSHHHHHHHHT
T ss_pred             CCeECCCCCchhCCHHHHHHHHH
Confidence            46999999999999999999984

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=81.56  E-value=0.97  Score=32.82  Aligned_cols=23  Identities=26%  Similarity=0.544  Sum_probs=17.9

Q ss_pred             CCEEeeecccccCcHHHHHhhhh
Q 012121          219 IPLICELCNVKCESQVVFDSHLV  241 (470)
Q Consensus       219 ~~~~CeLCNV~cnSe~~~~sHL~  241 (470)
                      ..|.|.+|+..|.+...|..|+.
T Consensus         8 ~~~~C~~C~k~f~~~~~L~~H~~   30 (70)
T 1x5w_A            8 HPEKCSECSYSCSSKAALRIHER   30 (70)
T ss_dssp             CSEECSSSSCEESSHHHHHHHHG
T ss_pred             CCeECCCCCcccCCHHHHHHHHH
Confidence            46788888888888888888774

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A

Probab=81.55  E-value=0.8  Score=30.53  Aligned_cols=23  Identities=13%  Similarity=0.231  Sum_probs=21.1

Q ss_pred             CCEEeeecccccCcHHHHHhhhh
Q 012121          219 IPLICELCNVKCESQVVFDSHLV  241 (470)
Q Consensus       219 ~~~~CeLCNV~cnSe~~~~sHL~  241 (470)
                      ..|.|.+|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2ema_A           11 KRYKCNECGKVFSRNSQLSQHQK   33 (46)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHT
T ss_pred             cCcCCCCCcchhCCHHHHHHHHH
Confidence            46999999999999999999974

>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=81.52  E-value=0.67  Score=30.81  Aligned_cols=23  Identities=13%  Similarity=0.494  Sum_probs=21.0

Q ss_pred             CCEEeeecccccCcHHHHHhhhh
Q 012121          219 IPLICELCNVKCESQVVFDSHLV  241 (470)
Q Consensus       219 ~~~~CeLCNV~cnSe~~~~sHL~  241 (470)
                      ..|.|.+|+..|.....|..|+.
T Consensus         9 k~~~C~~C~k~f~~~~~L~~H~~   31 (43)
T 2yrm_A            9 GAFFCNECDCRFSEEASLKRHTL   31 (43)
T ss_dssp             CCBCCSSSCCCBSSHHHHHHHHH
T ss_pred             CCEECCCCCCeeCChHHHHHHHH
Confidence            46899999999999999999974

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=81.48  E-value=0.77  Score=30.63  Aligned_cols=23  Identities=22%  Similarity=0.452  Sum_probs=21.1

Q ss_pred             CCEEeeecccccCcHHHHHhhhh
Q 012121          219 IPLICELCNVKCESQVVFDSHLV  241 (470)
Q Consensus       219 ~~~~CeLCNV~cnSe~~~~sHL~  241 (470)
                      ..|.|.+|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~   33 (46)
T 2emh_A           11 RPYICTVCGKAFTDRSNLIKHQK   33 (46)
T ss_dssp             CSEECTTTCCEESSHHHHHHHHH
T ss_pred             CCcCCCCCCchhCCHHHHHHHHH
Confidence            47999999999999999999984

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=81.45  E-value=0.69  Score=30.77  Aligned_cols=23  Identities=17%  Similarity=0.342  Sum_probs=21.0

Q ss_pred             CCEEeeecccccCcHHHHHhhhh
Q 012121          219 IPLICELCNVKCESQVVFDSHLV  241 (470)
Q Consensus       219 ~~~~CeLCNV~cnSe~~~~sHL~  241 (470)
                      ..|.|.+|+..|.....|..|+.
T Consensus        11 ~~~~C~~C~k~F~~~~~L~~H~~   33 (46)
T 2eoe_A           11 KPYKCNECGKVFTQNSHLANHQR   33 (46)
T ss_dssp             CSSEETTTTEECSSHHHHHHHHG
T ss_pred             CCeECCCcChhhCCHHHHHHHHH
Confidence            46899999999999999999984

>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1

Probab=81.43  E-value=0.91  Score=26.40  Aligned_cols=20  Identities=25%  Similarity=0.448  Sum_probs=18.4

Q ss_pred             ccccccccccCCHHHHHHHh
Q 012121           69 AWCELCRVDCNTLEILEQHK   88 (470)
Q Consensus        69 ~yC~VCnVsFnSpsqaqsHy   88 (470)
                      +-|.+|.+.|.....|..|.
T Consensus         2 ~~C~~C~k~f~~~~~l~~H~   21 (27)
T 1znf_A            2 YKCGLCERSFVEKSALSRHQ   21 (27)
T ss_dssp             CBCSSSCCBCSSHHHHHHHG
T ss_pred             ccCCCCCCcCCCHHHHHHHH
Confidence            46999999999999999997

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=81.40  E-value=0.77  Score=30.62  Aligned_cols=23  Identities=17%  Similarity=0.437  Sum_probs=21.2

Q ss_pred             CCEEeeecccccCcHHHHHhhhh
Q 012121          219 IPLICELCNVKCESQVVFDSHLV  241 (470)
Q Consensus       219 ~~~~CeLCNV~cnSe~~~~sHL~  241 (470)
                      ..|.|.+|+..|.....|..|+.
T Consensus        11 ~~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2en6_A           11 KPYGCNECGKTFSQKSILSAHQR   33 (46)
T ss_dssp             CCEEETTTTEEESSHHHHHHHHH
T ss_pred             cCeECCCCCcccCchHHHHHHHH
Confidence            46999999999999999999985

>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=81.25  E-value=0.86  Score=28.68  Aligned_cols=22  Identities=23%  Similarity=0.359  Sum_probs=19.7

Q ss_pred             CcccccccccccCCHHHHHHHh
Q 012121           67 PMAWCELCRVDCNTLEILEQHK   88 (470)
Q Consensus        67 ~~~yC~VCnVsFnSpsqaqsHy   88 (470)
                      ..+-|.+|...|.....|..|.
T Consensus         8 k~~~C~~C~k~f~~~~~l~~H~   29 (36)
T 2elq_A            8 KPFKCSLCEYATRSKSNLKAHM   29 (36)
T ss_dssp             CSEECSSSSCEESCHHHHHHHH
T ss_pred             CCccCCCCCchhCCHHHHHHHH
Confidence            4577999999999999999996

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=81.18  E-value=0.61  Score=31.15  Aligned_cols=23  Identities=17%  Similarity=0.369  Sum_probs=21.1

Q ss_pred             CCEEeeecccccCcHHHHHhhhh
Q 012121          219 IPLICELCNVKCESQVVFDSHLV  241 (470)
Q Consensus       219 ~~~~CeLCNV~cnSe~~~~sHL~  241 (470)
                      ..|.|.+|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2epz_A           11 KPFDCIDCGKAFSDHIGLNQHRR   33 (46)
T ss_dssp             CSBCCTTTCCCBSSHHHHHHHHT
T ss_pred             CCeECCCCCceeCCHHHHHHHHH
Confidence            46899999999999999999985

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=81.13  E-value=0.42  Score=33.09  Aligned_cols=25  Identities=24%  Similarity=0.542  Sum_probs=21.7

Q ss_pred             CCEEeeecccccCcHHHHHhhhhhh
Q 012121          219 IPLICELCNVKCESQVVFDSHLVGK  243 (470)
Q Consensus       219 ~~~~CeLCNV~cnSe~~~~sHL~GK  243 (470)
                      ..|.|.+|+..|.+...|..|+.-.
T Consensus        28 ~~~~C~~C~~~f~~~~~l~~H~~~h   52 (57)
T 1bbo_A           28 RPYHCTYCNFSFKTKGNLTKHMKSK   52 (57)
T ss_dssp             CCEECSSSSCEESSHHHHHHHHHSS
T ss_pred             CCccCCCCCchhcCHHHHHHHHHHh
Confidence            3589999999999999999998643

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=81.11  E-value=0.86  Score=30.39  Aligned_cols=23  Identities=26%  Similarity=0.349  Sum_probs=21.1

Q ss_pred             CCEEeeecccccCcHHHHHhhhh
Q 012121          219 IPLICELCNVKCESQVVFDSHLV  241 (470)
Q Consensus       219 ~~~~CeLCNV~cnSe~~~~sHL~  241 (470)
                      ..|.|.+|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2enc_A           11 KPFKCEECGKGFYTNSQCYSHQR   33 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHH
T ss_pred             CCcCCCCCCCcCCChHHHHHHHH
Confidence            47999999999999999999974

>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=81.10  E-value=0.87  Score=26.62  Aligned_cols=21  Identities=24%  Similarity=0.300  Sum_probs=18.8

Q ss_pred             cccccccccccCCHHHHHHHh
Q 012121           68 MAWCELCRVDCNTLEILEQHK   88 (470)
Q Consensus        68 ~~yC~VCnVsFnSpsqaqsHy   88 (470)
                      .+.|.+|...|.....|..|.
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~   22 (29)
T 2m0f_A            2 PLKCRECGKQFTTSGNLKRHL   22 (29)
T ss_dssp             CEECTTTSCEESCHHHHHHHH
T ss_pred             CccCCCCCCccCChhHHHHHH
Confidence            357999999999999999886

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=81.10  E-value=0.56  Score=31.33  Aligned_cols=23  Identities=22%  Similarity=0.476  Sum_probs=21.0

Q ss_pred             CCEEeeecccccCcHHHHHhhhh
Q 012121          219 IPLICELCNVKCESQVVFDSHLV  241 (470)
Q Consensus       219 ~~~~CeLCNV~cnSe~~~~sHL~  241 (470)
                      ..|.|.+|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2eq1_A           11 KPYKCNECGKAFRAHSNLTTHQV   33 (46)
T ss_dssp             CCCCCTTTTCCCSSHHHHHHHHT
T ss_pred             CCeECCcCChhhCCHHHHHHHHH
Confidence            46899999999999999999975

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=80.92  E-value=0.71  Score=30.72  Aligned_cols=23  Identities=17%  Similarity=0.238  Sum_probs=21.1

Q ss_pred             CCEEeeecccccCcHHHHHhhhh
Q 012121          219 IPLICELCNVKCESQVVFDSHLV  241 (470)
Q Consensus       219 ~~~~CeLCNV~cnSe~~~~sHL~  241 (470)
                      ..|.|.+|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~   33 (47)
T 2epx_A           11 KPYECIECGKAFIQNTSLIRHWR   33 (47)
T ss_dssp             CSBCCSSSCCCBSSHHHHHHHHT
T ss_pred             CCEECCccCchhCChHHHHHHhH
Confidence            46899999999999999999975

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=80.76  E-value=0.67  Score=31.04  Aligned_cols=23  Identities=22%  Similarity=0.444  Sum_probs=21.0

Q ss_pred             CCEEeeecccccCcHHHHHhhhh
Q 012121          219 IPLICELCNVKCESQVVFDSHLV  241 (470)
Q Consensus       219 ~~~~CeLCNV~cnSe~~~~sHL~  241 (470)
                      ..|.|.+|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2emz_A           11 RPFKCNECGKGFGRRSHLAGHLR   33 (46)
T ss_dssp             CSCCCSSSCCCCSSHHHHHHHHH
T ss_pred             CCeECCCCCcccCCHHHHHHHHH
Confidence            46899999999999999999985

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A

Probab=80.75  E-value=0.78  Score=30.69  Aligned_cols=23  Identities=17%  Similarity=0.304  Sum_probs=21.0

Q ss_pred             CCEEeeecccccCcHHHHHhhhh
Q 012121          219 IPLICELCNVKCESQVVFDSHLV  241 (470)
Q Consensus       219 ~~~~CeLCNV~cnSe~~~~sHL~  241 (470)
                      ..|.|.+|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~   33 (46)
T 2emk_A           11 KPYECKECGKAFSQTTHLIQHQR   33 (46)
T ss_dssp             CSCBCSSSCCBCSCHHHHHHHHH
T ss_pred             CceECCCCCchhCCHHHHHHHHH
Confidence            46899999999999999999984

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=80.75  E-value=0.68  Score=30.89  Aligned_cols=23  Identities=22%  Similarity=0.460  Sum_probs=21.1

Q ss_pred             CCEEeeecccccCcHHHHHhhhh
Q 012121          219 IPLICELCNVKCESQVVFDSHLV  241 (470)
Q Consensus       219 ~~~~CeLCNV~cnSe~~~~sHL~  241 (470)
                      ..|.|.+|+..|.....|..|+.
T Consensus        11 ~~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2ytg_A           11 KPFKCGECGKSYNQRVHLTQHQR   33 (46)
T ss_dssp             CSEECTTTCCEESSSHHHHTTGG
T ss_pred             CCeECCCCCcccCCHHHHHHHHH
Confidence            47999999999999999999984

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=80.67  E-value=0.8  Score=30.65  Aligned_cols=23  Identities=26%  Similarity=0.473  Sum_probs=21.1

Q ss_pred             CCEEeeecccccCcHHHHHhhhh
Q 012121          219 IPLICELCNVKCESQVVFDSHLV  241 (470)
Q Consensus       219 ~~~~CeLCNV~cnSe~~~~sHL~  241 (470)
                      ..|.|.+|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~   33 (46)
T 2elz_A           11 KPYKCEDCGKGYNRRLNLDMHQR   33 (46)
T ss_dssp             SSCBCSSSCCBCSSHHHHHHHGG
T ss_pred             CCeeCcccCchhCCHHHHHHHHH
Confidence            46899999999999999999975

>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=80.62  E-value=0.98  Score=26.49  Aligned_cols=21  Identities=14%  Similarity=0.210  Sum_probs=19.0

Q ss_pred             cccccccccccCCHHHHHHHh
Q 012121           68 MAWCELCRVDCNTLEILEQHK   88 (470)
Q Consensus        68 ~~yC~VCnVsFnSpsqaqsHy   88 (470)
                      .+-|.+|...|.....|..|.
T Consensus         3 ~~~C~~C~~~f~~~~~l~~H~   23 (30)
T 2m0d_A            3 PYQCDYCGRSFSDPTSKMRHL   23 (30)
T ss_dssp             CEECTTTCCEESCHHHHHHHH
T ss_pred             CccCCCCCcccCCHHHHHHHH
Confidence            467999999999999999986

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=80.53  E-value=0.63  Score=31.05  Aligned_cols=23  Identities=17%  Similarity=0.299  Sum_probs=20.8

Q ss_pred             CCEEeeecccccCcHHHHHhhhh
Q 012121          219 IPLICELCNVKCESQVVFDSHLV  241 (470)
Q Consensus       219 ~~~~CeLCNV~cnSe~~~~sHL~  241 (470)
                      ..|.|.+|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~   33 (46)
T 2yti_A           11 KPYKCNECGKVFTQNSHLARHRG   33 (46)
T ss_dssp             CTTCCSSSCCCCSSHHHHHHHHT
T ss_pred             cCeECCCCCcccCChhHHHHHhH
Confidence            46899999999999999999974

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=80.35  E-value=0.76  Score=30.65  Aligned_cols=23  Identities=17%  Similarity=0.541  Sum_probs=21.0

Q ss_pred             CCEEeeecccccCcHHHHHhhhh
Q 012121          219 IPLICELCNVKCESQVVFDSHLV  241 (470)
Q Consensus       219 ~~~~CeLCNV~cnSe~~~~sHL~  241 (470)
                      ..|.|.+|+..|.....|..|+.
T Consensus        11 ~~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2eoq_A           11 KPFKCDICGKSFCGRSRLNRHSM   33 (46)
T ss_dssp             CSCCCSSSCCCCSSHHHHHHHHH
T ss_pred             CCcCCCcCCchhCCHHHHHHHHH
Confidence            46899999999999999999975

>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=80.35  E-value=0.98  Score=28.40  Aligned_cols=23  Identities=13%  Similarity=0.189  Sum_probs=20.2

Q ss_pred             CcccccccccccCCHHHHHHHhc
Q 012121           67 PMAWCELCRVDCNTLEILEQHKN   89 (470)
Q Consensus        67 ~~~yC~VCnVsFnSpsqaqsHy~   89 (470)
                      ..+-|.+|...|.....|..|..
T Consensus         8 k~~~C~~C~k~f~~~~~l~~H~~   30 (36)
T 2elv_A            8 LLYDCHICERKFKNELDRDRHML   30 (36)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHT
T ss_pred             CCeECCCCCCccCCHHHHHHHHH
Confidence            45679999999999999999973

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=80.35  E-value=0.81  Score=30.62  Aligned_cols=23  Identities=22%  Similarity=0.348  Sum_probs=21.1

Q ss_pred             CCEEeeecccccCcHHHHHhhhh
Q 012121          219 IPLICELCNVKCESQVVFDSHLV  241 (470)
Q Consensus       219 ~~~~CeLCNV~cnSe~~~~sHL~  241 (470)
                      ..|.|.+|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2ytq_A           11 KPYGCSECGKAFSSKSYLIIHMR   33 (46)
T ss_dssp             CSCBCSSSCCBCSCHHHHHHHHT
T ss_pred             CCcCCCccChhhCChHHHHHHHH
Confidence            46899999999999999999975

>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=80.34  E-value=0.95  Score=28.27  Aligned_cols=22  Identities=18%  Similarity=0.187  Sum_probs=19.8

Q ss_pred             CcccccccccccCCHHHHHHHh
Q 012121           67 PMAWCELCRVDCNTLEILEQHK   88 (470)
Q Consensus        67 ~~~yC~VCnVsFnSpsqaqsHy   88 (470)
                      ..+-|.+|...|.....|..|.
T Consensus         8 k~~~C~~C~k~f~~~~~l~~H~   29 (36)
T 2elt_A            8 KPYKCPQCSYASAIKANLNVHL   29 (36)
T ss_dssp             CSEECSSSSCEESSHHHHHHHH
T ss_pred             CCCCCCCCCcccCCHHHHHHHH
Confidence            4577999999999999999986

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=80.31  E-value=0.84  Score=30.31  Aligned_cols=23  Identities=13%  Similarity=0.176  Sum_probs=21.0

Q ss_pred             CCEEeeecccccCcHHHHHhhhh
Q 012121          219 IPLICELCNVKCESQVVFDSHLV  241 (470)
Q Consensus       219 ~~~~CeLCNV~cnSe~~~~sHL~  241 (470)
                      ..|.|.+|+..|.....|..|+.
T Consensus        11 ~~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2en8_A           11 KSHTCDECGKNFCYISALRIHQR   33 (46)
T ss_dssp             SSEECTTTCCEESSHHHHHHHHT
T ss_pred             CCeECCCcCcccCCHHHHHHHHH
Confidence            46999999999999999999974

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=80.29  E-value=0.84  Score=30.42  Aligned_cols=23  Identities=17%  Similarity=0.317  Sum_probs=21.1

Q ss_pred             CCEEeeecccccCcHHHHHhhhh
Q 012121          219 IPLICELCNVKCESQVVFDSHLV  241 (470)
Q Consensus       219 ~~~~CeLCNV~cnSe~~~~sHL~  241 (470)
                      ..|.|.+|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2yu8_A           11 KPYKCNECGKVFTQNSHLARHRR   33 (46)
T ss_dssp             SSEECSSSCCEESSSHHHHHHTH
T ss_pred             CCeECCcCCchhCCHHHHHHHHH
Confidence            47999999999999999999984

>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A

Probab=80.22  E-value=1  Score=26.41  Aligned_cols=22  Identities=14%  Similarity=0.377  Sum_probs=20.1

Q ss_pred             CEEee--ecccccCcHHHHHhhhh
Q 012121          220 PLICE--LCNVKCESQVVFDSHLV  241 (470)
Q Consensus       220 ~~~Ce--LCNV~cnSe~~~~sHL~  241 (470)
                      .|.|.  .|+..|.....|..|+.
T Consensus         2 ~~~C~~~~C~k~f~~~~~l~~H~~   25 (29)
T 2ab3_A            2 VYVCHFENCGRSFNDRRKLNRHKK   25 (29)
T ss_dssp             CEEECSTTTCEEESSHHHHHHHHG
T ss_pred             CCCCcCCcCcCccCCHHHHHHHHH
Confidence            58999  99999999999999974

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=80.18  E-value=0.8  Score=30.54  Aligned_cols=23  Identities=17%  Similarity=0.299  Sum_probs=21.0

Q ss_pred             CCEEeeecccccCcHHHHHhhhh
Q 012121          219 IPLICELCNVKCESQVVFDSHLV  241 (470)
Q Consensus       219 ~~~~CeLCNV~cnSe~~~~sHL~  241 (470)
                      ..|.|.+|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~   33 (46)
T 2ytn_A           11 KPYKCNECGKVFTQNSHLARHRG   33 (46)
T ss_dssp             SSCBCTTTCCBCSSHHHHHHHGG
T ss_pred             cCeECCCCCCeeCCHHHHHHHhh
Confidence            46899999999999999999974

>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=80.18  E-value=0.9  Score=30.29  Aligned_cols=23  Identities=22%  Similarity=0.203  Sum_probs=21.0

Q ss_pred             CCEEeeecccccCcHHHHHhhhh
Q 012121          219 IPLICELCNVKCESQVVFDSHLV  241 (470)
Q Consensus       219 ~~~~CeLCNV~cnSe~~~~sHL~  241 (470)
                      ..|.|++|+..|.....|..|+.
T Consensus        11 ~~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2yso_A           11 KSHQCRECGEIFFQYVSLIEHQV   33 (46)
T ss_dssp             CCEECTTTCCEESSHHHHHHHHH
T ss_pred             CCEEccccChhhCCHHHHHHHHH
Confidence            46999999999999999999974

>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B

Probab=80.14  E-value=0.8  Score=31.53  Aligned_cols=22  Identities=18%  Similarity=0.522  Sum_probs=20.8

Q ss_pred             CCEEeeecccccCcHHHHHhhh
Q 012121          219 IPLICELCNVKCESQVVFDSHL  240 (470)
Q Consensus       219 ~~~~CeLCNV~cnSe~~~~sHL  240 (470)
                      ..|.|..|+..|+....|..|+
T Consensus         7 kp~~C~~CgK~F~~~s~L~~H~   28 (36)
T 1fv5_A            7 ARFMCLPCGIAFSSPSTLEAHQ   28 (36)
T ss_dssp             CCCEETTTTEECSCHHHHHHHH
T ss_pred             cCeECCCCCCccCCHhHccCcC
Confidence            5799999999999999999997

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=80.10  E-value=1.5  Score=30.72  Aligned_cols=24  Identities=21%  Similarity=0.448  Sum_probs=21.5

Q ss_pred             cCCEEeeecccccCcHHHHHhhhh
Q 012121          218 VIPLICELCNVKCESQVVFDSHLV  241 (470)
Q Consensus       218 ~~~~~CeLCNV~cnSe~~~~sHL~  241 (470)
                      ...|.|.+|+..|.....|..|+.
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~   33 (54)
T 2eps_A           10 GKPYICQSCGKGFSRPDHLNGHIK   33 (54)
T ss_dssp             SCCEECSSSCCEESSHHHHHHHHH
T ss_pred             CCCeECCCCCcccCCHHHHHHHHH
Confidence            457999999999999999999974

>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=80.09  E-value=0.69  Score=30.68  Aligned_cols=23  Identities=13%  Similarity=0.241  Sum_probs=20.9

Q ss_pred             CCEEeeecccccCcHHHHHhhhh
Q 012121          219 IPLICELCNVKCESQVVFDSHLV  241 (470)
Q Consensus       219 ~~~~CeLCNV~cnSe~~~~sHL~  241 (470)
                      ..|.|.+|+..|.....|..|+.
T Consensus        11 ~~~~C~~C~k~f~~~~~L~~H~~   33 (44)
T 2eou_A           11 TTSECQECGKIFRHSSLLIEHQA   33 (44)
T ss_dssp             CCCCCTTTCCCCSSHHHHHHHHH
T ss_pred             cCeECCCCCcccCCHHHHHHHHH
Confidence            46899999999999999999974

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	470
d1zu1a2	55	g.37.1.4 (A:74-128) dsRNA-binding protein ZFa (ZNF	0.001

>d1zu1a2 g.37.1.4 (A:74-128) dsRNA-binding protein ZFa (ZNF346, JAZ) {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 55

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: dsRNA-binding protein ZFa (ZNF346, JAZ)
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

 Score = 34.5 bits (79), Expect = 0.001
 Identities = 12/29 (41%), Positives = 19/29 (65%)

Query: 223 CELCNVKCESQVVFDSHLVGKKHLANVKR 251
           C +CN+   S VV +SH +GK H+ N++ 
Sbjct: 24  CPVCNMTFSSPVVAESHYIGKTHIKNLRL 52

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	470
d1zu1a2	55	dsRNA-binding protein ZFa (ZNF346, JAZ) {African c	98.98
d1zu1a2	55	dsRNA-binding protein ZFa (ZNF346, JAZ) {African c	98.76
d1zr9a1	67	Zinc finger protein 593, ZNF593 {Human (Homo sapie	98.1
d1zr9a1	67	Zinc finger protein 593, ZNF593 {Human (Homo sapie	98.04
d1zu1a1	72	dsRNA-binding protein ZFa (ZNF346, JAZ) {African c	97.77
d1zu1a1	72	dsRNA-binding protein ZFa (ZNF346, JAZ) {African c	97.16
d2vrda1	61	Spliceosomal protein U1C {Human (Homo sapiens) [Ta	97.12
d2vrda1	61	Spliceosomal protein U1C {Human (Homo sapiens) [Ta	96.44
d1bboa2	29	Enhancer binding protein {Human (Homo sapiens) [Ta	94.56
d2yrka1	48	Zinc finger homeobox protein 4, ZFHX4 {Human (Homo	93.83
d1srka_	35	Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc	91.53
d1fu9a_	36	U-shaped transcription factor, different fingers {	91.52
d1fu9a_	36	U-shaped transcription factor, different fingers {	90.15
d2ct1a2	36	Transcriptional repressor CTCF {Human (Homo sapien	88.62
d1a1ia2	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	87.36
d1p7aa_	37	Kruppel-like factor 3, Bklf {Mouse (Mus musculus)	86.51
d1x6ha2	36	Transcriptional repressor CTCF {Human (Homo sapien	86.25
d2adra1	29	ADR1 {Synthetic, based on Saccharomyces cerevisiae	85.91
d1srka_	35	Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc	83.13
d1x6ea1	33	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	82.73
d2epsa1	39	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	82.66
d1bboa2	29	Enhancer binding protein {Human (Homo sapiens) [Ta	81.89

>d1zu1a2 g.37.1.4 (A:74-128) dsRNA-binding protein ZFa (ZNF346, JAZ) {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: dsRNA-binding protein ZFa (ZNF346, JAZ)
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=98.98  E-value=1.5e-10  Score=87.97  Aligned_cols=39  Identities=26%  Similarity=0.455  Sum_probs=35.2

Q ss_pred             CCCCCCcccccccccccCCHHHHHHHhcCcchHHHHHhH
Q 012121           62 TRPPPPMAWCELCRVDCNTLEILEQHKNGKRHKRNLRTH  100 (470)
Q Consensus        62 ~~~p~~~~yC~VCnVsFnSpsqaqsHy~GKKHkKNLrkL  100 (470)
                      .+..+...||.||+++|+|+.++++||.||+|+|+++..
T Consensus        15 ~~~~d~nk~C~lCn~~Fns~~~AqsHY~GK~H~K~lk~~   53 (55)
T d1zu1a2          15 SDGEDRSKCCPVCNMTFSSPVVAESHYIGKTHIKNLRLR   53 (55)
T ss_dssp             SSCCCTTTEETTTTEECSSHHHHHHHHTSHHHHHHHHHH
T ss_pred             cCCCCchhhhhhhhcccCCHHHHHHHhhhhHHHHHHHHh
Confidence            355678889999999999999999999999999999864

>d1zu1a2 g.37.1.4 (A:74-128) dsRNA-binding protein ZFa (ZNF346, JAZ) {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: dsRNA-binding protein ZFa (ZNF346, JAZ)
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=98.76  E-value=2.4e-09  Score=81.27  Aligned_cols=35  Identities=34%  Similarity=0.630  Sum_probs=32.0

Q ss_pred             CCEEeeecccccCcHHHHHhhhhhhhHHHHHhhhc
Q 012121          219 IPLICELCNVKCESQVVFDSHLVGKKHLANVKRFH  253 (470)
Q Consensus       219 ~~~~CeLCNV~cnSe~~~~sHL~GKKH~kklKk~~  253 (470)
                      ...+|.|||++|||..+.++||.||+|.++|+..+
T Consensus        20 ~nk~C~lCn~~Fns~~~AqsHY~GK~H~K~lk~~~   54 (55)
T d1zu1a2          20 RSKCCPVCNMTFSSPVVAESHYIGKTHIKNLRLRE   54 (55)
T ss_dssp             TTTEETTTTEECSSHHHHHHHHTSHHHHHHHHHHH
T ss_pred             chhhhhhhhcccCCHHHHHHHhhhhHHHHHHHHhc
Confidence            35599999999999999999999999999999754

>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger protein 593, ZNF593
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.10  E-value=6.2e-07  Score=70.06  Aligned_cols=37  Identities=16%  Similarity=0.165  Sum_probs=34.4

Q ss_pred             cCCEEeeecccccCcHHHHHhhhhhhhHHHHHhhhcc
Q 012121          218 VIPLICELCNVKCESQVVFDSHLVGKKHLANVKRFHG  254 (470)
Q Consensus       218 ~~~~~CeLCNV~cnSe~~~~sHL~GKKH~kklKk~~g  254 (470)
                      ...|||-.|+..|.++.+|+.|+++|||+++||.+..
T Consensus        13 ~gqfYCv~C~K~F~se~~l~~H~ksKkHKrrvk~L~~   49 (67)
T d1zr9a1          13 GGLHRCLACARYFIDSTNLKTHFRSKDHKKRLKQLSV   49 (67)
T ss_dssp             GGCSEETTTTEECSSHHHHHHHTTCHHHHHHHHHHTS
T ss_pred             CCEEecccccCccCCHHHHHHHHcccHHHHHHHHhcc
Confidence            4689999999999999999999999999999999843

>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger protein 593, ZNF593
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.04  E-value=8e-07  Score=69.42  Aligned_cols=37  Identities=22%  Similarity=0.262  Sum_probs=34.0

Q ss_pred             CCcccccccccccCCHHHHHHHhcCcchHHHHHhHHh
Q 012121           66 PPMAWCELCRVDCNTLEILEQHKNGKRHKRNLRTHAD  102 (470)
Q Consensus        66 ~~~~yC~VCnVsFnSpsqaqsHy~GKKHkKNLrkLk~  102 (470)
                      ...+||.+|+++|.+..+|+.|..+|+|+|++++|+.
T Consensus        13 ~gqfYCv~C~K~F~se~~l~~H~ksKkHKrrvk~L~~   49 (67)
T d1zr9a1          13 GGLHRCLACARYFIDSTNLKTHFRSKDHKKRLKQLSV   49 (67)
T ss_dssp             GGCSEETTTTEECSSHHHHHHHTTCHHHHHHHHHHTS
T ss_pred             CCEEecccccCccCCHHHHHHHHcccHHHHHHHHhcc
Confidence            3458999999999999999999999999999999864

>d1zu1a1 g.37.1.4 (A:2-73) dsRNA-binding protein ZFa (ZNF346, JAZ) {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: dsRNA-binding protein ZFa (ZNF346, JAZ)
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=97.77  E-value=5e-06  Score=65.45  Aligned_cols=37  Identities=14%  Similarity=0.262  Sum_probs=34.4

Q ss_pred             CcccccccccccCCHHHHHHHhcCcchHHHHHhHHhh
Q 012121           67 PMAWCELCRVDCNTLEILEQHKNGKRHKRNLRTHADL  103 (470)
Q Consensus        67 ~~~yC~VCnVsFnSpsqaqsHy~GKKHkKNLrkLk~~  103 (470)
                      ...||.||++.+.|+++..+||.||||++|++.+..+
T Consensus        31 td~~CkvC~a~L~seSQriaHYeskkHa~kvr~yf~~   67 (72)
T d1zu1a1          31 SDTQCKVCSAVLISESQKLAHYQSRKHANKVRRYMAI   67 (72)
T ss_dssp             CSSEETTTTEECCSHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred             chhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3568999999999999999999999999999999876

>d1zu1a1 g.37.1.4 (A:2-73) dsRNA-binding protein ZFa (ZNF346, JAZ) {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: dsRNA-binding protein ZFa (ZNF346, JAZ)
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=97.16  E-value=7.6e-05  Score=58.63  Aligned_cols=33  Identities=24%  Similarity=0.449  Sum_probs=30.9

Q ss_pred             CEEeeecccccCcHHHHHhhhhhhhHHHHHhhh
Q 012121          220 PLICELCNVKCESQVVFDSHLVGKKHLANVKRF  252 (470)
Q Consensus       220 ~~~CeLCNV~cnSe~~~~sHL~GKKH~kklKk~  252 (470)
                      ..+|.+|++...|+.+-.+|+.||||.++|+..
T Consensus        32 d~~CkvC~a~L~seSQriaHYeskkHa~kvr~y   64 (72)
T d1zu1a1          32 DTQCKVCSAVLISESQKLAHYQSRKHANKVRRY   64 (72)
T ss_dssp             SSEETTTTEECCSHHHHHHHHHCHHHHHHHHHH
T ss_pred             hhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            459999999999999999999999999999875

>d2vrda1 g.37.1.4 (A:1-61) Spliceosomal protein U1C {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Spliceosomal protein U1C
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.12  E-value=0.00012  Score=56.12  Aligned_cols=35  Identities=20%  Similarity=0.531  Sum_probs=31.5

Q ss_pred             ccccccccccc--CCHHHHHHHhcCcchHHHHHhHHh
Q 012121           68 MAWCELCRVDC--NTLEILEQHKNGKRHKRNLRTHAD  102 (470)
Q Consensus        68 ~~yC~VCnVsF--nSpsqaqsHy~GKKHkKNLrkLk~  102 (470)
                      -+||+.|+++|  +|+++-..|+.|++|+.|++.+..
T Consensus         3 ryyCdYC~~~lt~ds~s~RK~H~~G~kH~~n~~~yy~   39 (61)
T d2vrda1           3 KFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDYYQ   39 (61)
T ss_dssp             SCEETTTTEECSCCSHHHHHHHTCCTHHHHHHHHHTS
T ss_pred             chhhhhhcchhccCChhHHHHHhccHHHHHHHHHHHH
Confidence            47999999999  578888999999999999998765

>d2vrda1 g.37.1.4 (A:1-61) Spliceosomal protein U1C {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Spliceosomal protein U1C
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.44  E-value=0.0006  Score=52.05  Aligned_cols=33  Identities=33%  Similarity=0.639  Sum_probs=28.8

Q ss_pred             CEEeeecccccC--cHHHHHhhhhhhhHHHHHhhh
Q 012121          220 PLICELCNVKCE--SQVVFDSHLVGKKHLANVKRF  252 (470)
Q Consensus       220 ~~~CeLCNV~cn--Se~~~~sHL~GKKH~kklKk~  252 (470)
                      .|||+-|+++++  |..+=+.|++|+||+.+++..
T Consensus         3 ryyCdYC~~~lt~ds~s~RK~H~~G~kH~~n~~~y   37 (61)
T d2vrda1           3 KFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDY   37 (61)
T ss_dssp             SCEETTTTEECSCCSHHHHHHHTCCTHHHHHHHHH
T ss_pred             chhhhhhcchhccCChhHHHHHhccHHHHHHHHHH
Confidence            689999999995  556678999999999999865

>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.56  E-value=0.0034  Score=41.29  Aligned_cols=29  Identities=24%  Similarity=0.540  Sum_probs=26.5

Q ss_pred             CEEeeecccccCcHHHHHhhhhhhhHHHH
Q 012121          220 PLICELCNVKCESQVVFDSHLVGKKHLAN  248 (470)
Q Consensus       220 ~~~CeLCNV~cnSe~~~~sHL~GKKH~kk  248 (470)
                      .|.|.-||..|-....|..||..|-|.++
T Consensus         1 py~C~~CnF~FKTKGNLTKHmkSKaH~kk   29 (29)
T d1bboa2           1 PYHCTYCNFSFKTKGNLTKHMKSKAHSKK   29 (29)
T ss_dssp             CEECSSSSCEESSHHHHHHHHHSSSSCCC
T ss_pred             CcccceeeeeEeeccchhHhhhhhhhccC
Confidence            48999999999999999999999999653

>d2yrka1 g.37.1.4 (A:8-55) Zinc finger homeobox protein 4, ZFHX4 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger homeobox protein 4, ZFHX4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.83  E-value=0.0081  Score=43.80  Aligned_cols=35  Identities=29%  Similarity=0.671  Sum_probs=32.0

Q ss_pred             EeeecccccCcHHHHHhhhhhhhHHHHHhhhcccc
Q 012121          222 ICELCNVKCESQVVFDSHLVGKKHLANVKRFHGHR  256 (470)
Q Consensus       222 ~CeLCNV~cnSe~~~~sHL~GKKH~kklKk~~g~~  256 (470)
                      -|.+|++..++....+.|+-.+.|.++||..-+.+
T Consensus         8 eC~lC~vKYs~~~SvrdHiFskqHI~~Vk~~v~~q   42 (48)
T d2yrka1           8 ECTLCGVKYSARLSIRDHIFSKQHISKVRETVGSQ   42 (48)
T ss_dssp             CCTTTTCCCCSSSCHHHHHTSHHHHHHHHHTTCSS
T ss_pred             cCcccceeeeeecchHhhhhhHHHHHHHHHHHHhH
Confidence            69999999999999999999999999999875443

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.53  E-value=0.046  Score=36.93  Aligned_cols=28  Identities=21%  Similarity=0.478  Sum_probs=24.1

Q ss_pred             cCCEEeeecccccCcHHHHHhhhhhhhHHH
Q 012121          218 VIPLICELCNVKCESQVVFDSHLVGKKHLA  247 (470)
Q Consensus       218 ~~~~~CeLCNV~cnSe~~~~sHL~GKKH~k  247 (470)
                      ..+|.|++|+..|+....|+.|+.  .|..
T Consensus         5 ekPy~C~~C~k~F~~~~~L~~H~r--~Ht~   32 (35)
T d1srka_           5 KRPFVCRICLSAFTTKANCARHLK--VHTD   32 (35)
T ss_dssp             CSCEECSSSCCEESSHHHHHHHHG--GGTS
T ss_pred             CccccCCCCCCcccChHHHHHHcc--ccCC
Confidence            468999999999999999999984  6643

>d1fu9a_ g.37.1.2 (A:) U-shaped transcription factor, different fingers {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: U-shaped transcription factor, different fingers
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=91.52  E-value=0.042  Score=37.78  Aligned_cols=22  Identities=23%  Similarity=0.528  Sum_probs=19.4

Q ss_pred             CcccccccccccCCHHHHHHHh
Q 012121           67 PMAWCELCRVDCNTLEILEQHK   88 (470)
Q Consensus        67 ~~~yC~VCnVsFnSpsqaqsHy   88 (470)
                      ...||..|+++|++-..|..|.
T Consensus         7 ~~rYC~~CDI~Fn~~~T~~aHK   28 (36)
T d1fu9a_           7 MKKYCSTCDISFNYVKTYLAHK   28 (36)
T ss_dssp             CCSEETTTTEECSSHHHHHHHH
T ss_pred             hhhHHhhCCceehhHHHHHHHH
Confidence            3469999999999999999884

>d1fu9a_ g.37.1.2 (A:) U-shaped transcription factor, different fingers {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: U-shaped transcription factor, different fingers
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=90.15  E-value=0.065  Score=36.81  Aligned_cols=22  Identities=14%  Similarity=0.418  Sum_probs=19.8

Q ss_pred             CCEEeeecccccCcHHHHHhhh
Q 012121          219 IPLICELCNVKCESQVVFDSHL  240 (470)
Q Consensus       219 ~~~~CeLCNV~cnSe~~~~sHL  240 (470)
                      ...||..|+|.||+...|..|.
T Consensus         7 ~~rYC~~CDI~Fn~~~T~~aHK   28 (36)
T d1fu9a_           7 MKKYCSTCDISFNYVKTYLAHK   28 (36)
T ss_dssp             CCSEETTTTEECSSHHHHHHHH
T ss_pred             hhhHHhhCCceehhHHHHHHHH
Confidence            4579999999999999999994

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.62  E-value=0.1  Score=35.14  Aligned_cols=26  Identities=19%  Similarity=0.528  Sum_probs=22.7

Q ss_pred             CcCCEEeeecccccCcHHHHHhhhhh
Q 012121          217 GVIPLICELCNVKCESQVVFDSHLVG  242 (470)
Q Consensus       217 ~~~~~~CeLCNV~cnSe~~~~sHL~G  242 (470)
                      ...+|.|++|+..|+....|..|+.-
T Consensus         5 gekP~~C~~C~k~F~~~~~L~~H~~~   30 (36)
T d2ct1a2           5 GEKPYECYICHARFTQSGTMKMHILQ   30 (36)
T ss_dssp             CCCSEECTTTCCEESCHHHHHHHHHH
T ss_pred             CCCCEeCCCCcccccchHHHHHHccc
Confidence            34689999999999999999999753

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=87.36  E-value=0.12  Score=33.25  Aligned_cols=23  Identities=17%  Similarity=0.482  Sum_probs=21.0

Q ss_pred             CCEEeeecccccCcHHHHHhhhh
Q 012121          219 IPLICELCNVKCESQVVFDSHLV  241 (470)
Q Consensus       219 ~~~~CeLCNV~cnSe~~~~sHL~  241 (470)
                      ..|.|.+|+..|+....|..|+.
T Consensus         2 KPy~C~~C~k~F~~~~~L~~H~r   24 (28)
T d1a1ia2           2 KPFQCRICMRNFSRSDHLTTHIR   24 (28)
T ss_dssp             CCEECTTTCCEESCHHHHHHHHH
T ss_pred             cCccCCCCcCEecccccccccCC
Confidence            46999999999999999999974

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=86.51  E-value=0.14  Score=34.50  Aligned_cols=27  Identities=22%  Similarity=0.496  Sum_probs=23.7

Q ss_pred             cCCEEeeecccccCcHHHHHhhhhhhhHH
Q 012121          218 VIPLICELCNVKCESQVVFDSHLVGKKHL  246 (470)
Q Consensus       218 ~~~~~CeLCNV~cnSe~~~~sHL~GKKH~  246 (470)
                      ..+|.|.+|+..|+....|..|+  +.|+
T Consensus         9 eKPy~C~~C~k~F~~~~~L~~H~--r~H~   35 (37)
T d1p7aa_           9 IKPFQCPDCDRSFSRSDHLALHR--KRHM   35 (37)
T ss_dssp             SSSBCCTTTCCCBSSHHHHHHHH--GGGT
T ss_pred             ccCeEeCCCCCEecCHHHHHHHH--hcCc
Confidence            46899999999999999999998  4664

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.25  E-value=0.19  Score=33.66  Aligned_cols=24  Identities=21%  Similarity=0.527  Sum_probs=21.8

Q ss_pred             cCCEEeeecccccCcHHHHHhhhh
Q 012121          218 VIPLICELCNVKCESQVVFDSHLV  241 (470)
Q Consensus       218 ~~~~~CeLCNV~cnSe~~~~sHL~  241 (470)
                      ...|.|++|+..|+....|..|+.
T Consensus         6 ekPy~C~~C~k~F~~~~~L~~H~r   29 (36)
T d1x6ha2           6 EKPYACSHCDKTFRQKQLLDMHFK   29 (36)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHHH
T ss_pred             CCCEECCCCCCCcCCHhHHHHhCc
Confidence            468999999999999999999983

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=85.91  E-value=0.12  Score=33.39  Aligned_cols=22  Identities=23%  Similarity=0.548  Sum_probs=20.3

Q ss_pred             CEEeeecccccCcHHHHHhhhh
Q 012121          220 PLICELCNVKCESQVVFDSHLV  241 (470)
Q Consensus       220 ~~~CeLCNV~cnSe~~~~sHL~  241 (470)
                      .|.|.+|+..|+....|..|+.
T Consensus         2 p~~C~~C~k~F~~~~~L~~H~r   23 (29)
T d2adra1           2 SFVCEVCTRAFARQEHLKRHYR   23 (29)
T ss_dssp             CBCCTTTCCCBSCHHHHHHHHH
T ss_pred             cCCCCCCCCCCCCchHcccccC
Confidence            5899999999999999999984

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=83.13  E-value=0.3  Score=32.78  Aligned_cols=26  Identities=23%  Similarity=0.296  Sum_probs=22.4

Q ss_pred             CcccccccccccCCHHHHHHHhcCcchH
Q 012121           67 PMAWCELCRVDCNTLEILEQHKNGKRHK   94 (470)
Q Consensus        67 ~~~yC~VCnVsFnSpsqaqsHy~GKKHk   94 (470)
                      +.+.|.+|++.|+....|..|.  +.|.
T Consensus         6 kPy~C~~C~k~F~~~~~L~~H~--r~Ht   31 (35)
T d1srka_           6 RPFVCRICLSAFTTKANCARHL--KVHT   31 (35)
T ss_dssp             SCEECSSSCCEESSHHHHHHHH--GGGT
T ss_pred             ccccCCCCCCcccChHHHHHHc--cccC
Confidence            5678999999999999999997  4564

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.73  E-value=0.34  Score=32.11  Aligned_cols=24  Identities=17%  Similarity=0.264  Sum_probs=21.6

Q ss_pred             cCCEEeeecccccCcHHHHHhhhh
Q 012121          218 VIPLICELCNVKCESQVVFDSHLV  241 (470)
Q Consensus       218 ~~~~~CeLCNV~cnSe~~~~sHL~  241 (470)
                      ...|.|..|+..|+....|..|++
T Consensus         5 ekpy~C~~Cgk~F~~~~~L~~H~r   28 (33)
T d1x6ea1           5 EKPYGCVECGKAFSRSSILVQHQR   28 (33)
T ss_dssp             CCCEECSSSCCEESSHHHHHHHHH
T ss_pred             CCCeeCCCCCCEeCchHHhHhhcc
Confidence            468999999999999999999974

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.66  E-value=0.3  Score=33.46  Aligned_cols=23  Identities=22%  Similarity=0.515  Sum_probs=21.1

Q ss_pred             CCEEeeecccccCcHHHHHhhhh
Q 012121          219 IPLICELCNVKCESQVVFDSHLV  241 (470)
Q Consensus       219 ~~~~CeLCNV~cnSe~~~~sHL~  241 (470)
                      ..|.|++|+..|+....|..|++
T Consensus         4 Kpy~C~~Cgk~F~~~~~L~~H~r   26 (39)
T d2epsa1           4 KPYICQSCGKGFSRPDHLNGHIK   26 (39)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHH
T ss_pred             CCccCCCCCCCcCChHHhhccCc
Confidence            57999999999999999999974

>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.89  E-value=0.2  Score=32.71  Aligned_cols=27  Identities=26%  Similarity=0.497  Sum_probs=25.1

Q ss_pred             ccccccccccCCHHHHHHHhcCcchHH
Q 012121           69 AWCELCRVDCNTLEILEQHKNGKRHKR   95 (470)
Q Consensus        69 ~yC~VCnVsFnSpsqaqsHy~GKKHkK   95 (470)
                      +.|..|+..|...-.+..|...|-|.|
T Consensus         2 y~C~~CnF~FKTKGNLTKHmkSKaH~k   28 (29)
T d1bboa2           2 YHCTYCNFSFKTKGNLTKHMKSKAHSK   28 (29)
T ss_dssp             EECSSSSCEESSHHHHHHHHHSSSSCC
T ss_pred             cccceeeeeEeeccchhHhhhhhhhcc
Confidence            569999999999999999999999975