Citrus Sinensis ID: 012131
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 470 | 2.2.26 [Sep-21-2011] | |||||||
| Q9C6S5 | 495 | Probable polyamine transp | yes | no | 0.993 | 0.943 | 0.697 | 0.0 | |
| Q9FFL1 | 490 | Polyamine transporter RMV | no | no | 0.940 | 0.902 | 0.695 | 0.0 | |
| Q6Z8D0 | 531 | Polyamine transporter PUT | no | no | 0.951 | 0.841 | 0.704 | 0.0 | |
| A2X8M8 | 531 | Polyamine transporter PUT | N/A | no | 0.951 | 0.841 | 0.704 | 0.0 | |
| Q9C6S4 | 482 | Probable polyamine transp | no | no | 0.955 | 0.931 | 0.665 | 1e-176 | |
| Q9LH39 | 479 | Probable polyamine transp | no | no | 0.976 | 0.958 | 0.560 | 1e-148 | |
| Q9LHN7 | 478 | Probable polyamine transp | no | no | 0.955 | 0.939 | 0.457 | 1e-112 | |
| P37034 | 464 | Uncharacterized transport | yes | no | 0.695 | 0.704 | 0.257 | 6e-12 | |
| Q5RKI7 | 479 | Solute carrier family 7 m | yes | no | 0.682 | 0.670 | 0.239 | 3e-11 | |
| Q91WN3 | 478 | Solute carrier family 7 m | yes | no | 0.814 | 0.801 | 0.234 | 7e-11 |
| >sp|Q9C6S5|PHSB_ARATH Probable polyamine transporter At1g31830 OS=Arabidopsis thaliana GN=At1g31830 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 697 bits (1799), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 329/472 (69%), Positives = 400/472 (84%), Gaps = 5/472 (1%)
Query: 2 ESNNVHYVQLGEDSSPK-----LERFQKVSVIPLVFLIFYEVSGGPFGVEDSVMAAGPLL 56
E+N V Y +G D P ++ +KVS++PLVFLIFYEVSGGPFGVEDSV AAGPLL
Sbjct: 21 ENNEVPYSSVGADEVPSSPPKATDKIRKVSMLPLVFLIFYEVSGGPFGVEDSVNAAGPLL 80
Query: 57 ALIGFLFFPFIWSIPEALITAEMGTMFPENGGYVVWVASALGPHWGFQQGWMKWLSGVID 116
AL+GF+ FPFIWSIPEALITAEMGTM+PENGGYVVWV+SALGP WGFQQGWMKWLSGVID
Sbjct: 81 ALLGFVIFPFIWSIPEALITAEMGTMYPENGGYVVWVSSALGPFWGFQQGWMKWLSGVID 140
Query: 117 NALYPVLFLDYLKSAIPALEGGFPRIVAVLLLTTALTYMNYRGLTIVGWVAIVLGVFSLV 176
NALYPVLFLDYLKS +PAL G PR+ ++L+LT LTY+NYRGLTIVGWVA+++GVFS++
Sbjct: 141 NALYPVLFLDYLKSGVPALGSGLPRVASILVLTILLTYLNYRGLTIVGWVAVLMGVFSIL 200
Query: 177 PFALMGLIAIPRLKPWRWCMVDLKNVNWGLYLNTLFWNLNYWDSISTLVGEVEDPGKTLP 236
PFA+MGLI+IP+L+P RW ++DL NVNW LYLNTLFWNLNYWDSISTL GEVE+P TLP
Sbjct: 201 PFAVMGLISIPQLEPSRWLVMDLGNVNWNLYLNTLFWNLNYWDSISTLAGEVENPNHTLP 260
Query: 237 RALFYALILVVFAYFFPLLIGTGAAPVHRELWSDGYFSVIAKLIGGVWLRTWIQGASAVS 296
+ALFY +ILV +Y FPLL G GA P+ RE W+DGYFS +AK +GG WLR W+Q A+A S
Sbjct: 261 KALFYGVILVACSYIFPLLAGIGAIPLEREKWTDGYFSDVAKALGGAWLRWWVQAAAATS 320
Query: 297 NMGMFIAEMSSDSFQLLGMAERGMLPEIFARRSQYGTPLVGILFSASGVILLSWLSFQEI 356
NMGMFIAEMSSDSFQLLGMAERGMLPE FA+RS+YGTPL+GILFSASGV+LLSWLSFQEI
Sbjct: 321 NMGMFIAEMSSDSFQLLGMAERGMLPEFFAKRSRYGTPLLGILFSASGVVLLSWLSFQEI 380
Query: 357 VAAENFLYCFAMIMEFIAFVKLRMQYPEAIRPYKVPLGTVGAILLCIPPTLLILVVLALA 416
VAAEN LYC MI+EFIAFV++RM++P A RPYK+P+GT G+IL+CIPPT+LI V+AL+
Sbjct: 381 VAAENLLYCVGMILEFIAFVRMRMKHPAASRPYKIPIGTTGSILMCIPPTILICAVVALS 440
Query: 417 SPKVMAISVIAVLIGFFIQPCMTYAEKRQWFRFSMSSDLPDILSASADPQHN 468
S KV A+S++ ++IGF I P + + ++++W +FS+SSDLPD+ + + +
Sbjct: 441 SLKVAAVSIVMMIIGFLIHPLLNHMDRKRWVKFSISSDLPDLQQQTREYEET 492
|
Probable cell membrane polyamine/proton symporter involved in the polyamine uptake in cells. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FFL1|RMV1_ARATH Polyamine transporter RMV1 OS=Arabidopsis thaliana GN=RMV1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 659 bits (1701), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 309/444 (69%), Positives = 381/444 (85%), Gaps = 2/444 (0%)
Query: 19 LERFQKVSVIPLVFLIFYEVSGGPFGVEDSVMAAGPLLALIGFLFFPFIWSIPEALITAE 78
+ + +K++V+PLVFLIFYEVSGGPFG+EDSV AAGPLLA++GF+ FPFIWSIPEALITAE
Sbjct: 47 VNQIKKITVLPLVFLIFYEVSGGPFGIEDSVKAAGPLLAIVGFIVFPFIWSIPEALITAE 106
Query: 79 MGTMFPENGGYVVWVASALGPHWGFQQGWMKWLSGVIDNALYPVLFLDYLKSAIPALEGG 138
MGTMFPENGGYVVWV A+GP+WGFQQGW+KWLSGVIDNALYP+LFLDYLKS IP L G
Sbjct: 107 MGTMFPENGGYVVWVTLAMGPYWGFQQGWVKWLSGVIDNALYPILFLDYLKSGIPILGSG 166
Query: 139 FPRIVAVLLLTTALTYMNYRGLTIVGWVAIVLGVFSLVPFALMGLIAIPRLKPWRWCMV- 197
PR+ A+L+LT ALTY+NYRGL+IVG A++LGVFS++PF +M ++IP+LKP RW +V
Sbjct: 167 IPRVAAILVLTVALTYLNYRGLSIVGVAAVLLGVFSILPFVVMSFMSIPKLKPSRWLVVS 226
Query: 198 -DLKNVNWGLYLNTLFWNLNYWDSISTLVGEVEDPGKTLPRALFYALILVVFAYFFPLLI 256
+K VNW LYLNTLFWNLNYWDS+STL GEVE+P KTLPRALFYAL+LVVF+Y FP+L
Sbjct: 227 KKMKGVNWSLYLNTLFWNLNYWDSVSTLTGEVENPSKTLPRALFYALLLVVFSYIFPVLT 286
Query: 257 GTGAAPVHRELWSDGYFSVIAKLIGGVWLRTWIQGASAVSNMGMFIAEMSSDSFQLLGMA 316
GTGA + ++LW+DGYF+ I K+IGGVWL WIQ A+A SNMGMF+AEMSSDSFQLLGMA
Sbjct: 287 GTGAIALDQKLWTDGYFADIGKVIGGVWLGWWIQAAAATSNMGMFLAEMSSDSFQLLGMA 346
Query: 317 ERGMLPEIFARRSQYGTPLVGILFSASGVILLSWLSFQEIVAAENFLYCFAMIMEFIAFV 376
ERGMLPE+FA+RS+Y TP VGILFSASGVI+LSWLSFQEIVAAEN LYCF M++EFI FV
Sbjct: 347 ERGMLPEVFAKRSRYRTPWVGILFSASGVIILSWLSFQEIVAAENLLYCFGMVLEFITFV 406
Query: 377 KLRMQYPEAIRPYKVPLGTVGAILLCIPPTLLILVVLALASPKVMAISVIAVLIGFFIQP 436
+LRM+YP A RP+K+P+G +G++L+CIPPT+LI V++A + KV +S+ A++IG +QP
Sbjct: 407 RLRMKYPAASRPFKIPVGVLGSVLMCIPPTVLIGVIMAFTNLKVALVSLAAIVIGLVLQP 466
Query: 437 CMTYAEKRQWFRFSMSSDLPDILS 460
C+ EK+ W +FS SS LP+++
Sbjct: 467 CLKQVEKKGWLKFSTSSHLPNLME 490
|
Cell membrane polyamine/proton symporter involved in the polyamine uptake in cells. Possesses high affinity for spermine and spermidine and lower affinity for putrescine. Transports paraquat, a polyamine analog, and thus confers sensitivity to this chemical which is used as a herbicide. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q6Z8D0|PUT1_ORYSJ Polyamine transporter PUT1 OS=Oryza sativa subsp. japonica GN=PUT1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 652 bits (1682), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 315/447 (70%), Positives = 376/447 (84%)
Query: 12 GEDSSPKLERFQKVSVIPLVFLIFYEVSGGPFGVEDSVMAAGPLLALIGFLFFPFIWSIP 71
G+ P + VS+IPL+FLIFYEVSGGPFG+EDSV AAGPLLA+IGFL P IWSIP
Sbjct: 70 GDAGGPMPSSARTVSMIPLIFLIFYEVSGGPFGIEDSVGAAGPLLAIIGFLVLPVIWSIP 129
Query: 72 EALITAEMGTMFPENGGYVVWVASALGPHWGFQQGWMKWLSGVIDNALYPVLFLDYLKSA 131
EALITAE+G MFPENGGYVVWVASALGP+WGFQQGWMKWLSGVIDNALYPVLFLDYLKS
Sbjct: 130 EALITAELGAMFPENGGYVVWVASALGPYWGFQQGWMKWLSGVIDNALYPVLFLDYLKSG 189
Query: 132 IPALEGGFPRIVAVLLLTTALTYMNYRGLTIVGWVAIVLGVFSLVPFALMGLIAIPRLKP 191
+PAL GG PR AV+ LT LT +NYRGLT+VGWVAI LGVFSL+PF +MGLIA+P+L+P
Sbjct: 190 VPALGGGAPRAFAVVGLTAVLTLLNYRGLTVVGWVAICLGVFSLLPFFVMGLIALPKLRP 249
Query: 192 WRWCMVDLKNVNWGLYLNTLFWNLNYWDSISTLVGEVEDPGKTLPRALFYALILVVFAYF 251
RW ++DL NV+W LYLNTLFWNLNYWDSISTL GEV++PGKTLP+ALFYA+I VV AY
Sbjct: 250 ARWLVIDLHNVDWNLYLNTLFWNLNYWDSISTLAGEVKNPGKTLPKALFYAVIFVVVAYL 309
Query: 252 FPLLIGTGAAPVHRELWSDGYFSVIAKLIGGVWLRTWIQGASAVSNMGMFIAEMSSDSFQ 311
+PLL GTGA P+ R W+DGYF+ IAKL+GG WL W+Q A+A+SNMGMF+AEMSSDS+Q
Sbjct: 310 YPLLAGTGAVPLDRGQWTDGYFADIAKLLGGAWLMWWVQSAAALSNMGMFVAEMSSDSYQ 369
Query: 312 LLGMAERGMLPEIFARRSQYGTPLVGILFSASGVILLSWLSFQEIVAAENFLYCFAMIME 371
LLGMAERGMLP FA RS+YGTPL GILFSASGV+LLS +SFQEIVAAENFLYCF M++E
Sbjct: 370 LLGMAERGMLPSFFAARSRYGTPLAGILFSASGVLLLSMMSFQEIVAAENFLYCFGMLLE 429
Query: 372 FIAFVKLRMQYPEAIRPYKVPLGTVGAILLCIPPTLLILVVLALASPKVMAISVIAVLIG 431
F+AF+ R++ P+A RPY+VPLGT G + + +PPT LI VVLAL++ KV +S+ AV +G
Sbjct: 430 FVAFILHRVRRPDAARPYRVPLGTAGCVAMLVPPTALIAVVLALSTLKVAVVSLGAVAMG 489
Query: 432 FFIQPCMTYAEKRQWFRFSMSSDLPDI 458
+QP + + EK++W RFS++ DLP+I
Sbjct: 490 LVLQPALRFVEKKRWLRFSVNPDLPEI 516
|
Cell membrane polyamine/proton symporter involved in the polyamine uptake in cells. Possesses high affinity for spermidine and lower affinity for spermine and putrescine. Transports paraquat, a polyamine analog, and thus confers sensitivity to this chemical which is used as a herbicide. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|A2X8M8|PUT1_ORYSI Polyamine transporter PUT1 OS=Oryza sativa subsp. indica GN=PUT1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 652 bits (1682), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 315/447 (70%), Positives = 376/447 (84%)
Query: 12 GEDSSPKLERFQKVSVIPLVFLIFYEVSGGPFGVEDSVMAAGPLLALIGFLFFPFIWSIP 71
G+ P + VS+IPL+FLIFYEVSGGPFG+EDSV AAGPLLA+IGFL P IWSIP
Sbjct: 70 GDAGGPMPSSARTVSMIPLIFLIFYEVSGGPFGIEDSVGAAGPLLAIIGFLVLPVIWSIP 129
Query: 72 EALITAEMGTMFPENGGYVVWVASALGPHWGFQQGWMKWLSGVIDNALYPVLFLDYLKSA 131
EALITAE+G MFPENGGYVVWVASALGP+WGFQQGWMKWLSGVIDNALYPVLFLDYLKS
Sbjct: 130 EALITAELGAMFPENGGYVVWVASALGPYWGFQQGWMKWLSGVIDNALYPVLFLDYLKSG 189
Query: 132 IPALEGGFPRIVAVLLLTTALTYMNYRGLTIVGWVAIVLGVFSLVPFALMGLIAIPRLKP 191
+PAL GG PR AV+ LT LT +NYRGLT+VGWVAI LGVFSL+PF +MGLIA+P+L+P
Sbjct: 190 VPALGGGAPRAFAVVGLTAVLTLLNYRGLTVVGWVAICLGVFSLLPFFVMGLIALPKLRP 249
Query: 192 WRWCMVDLKNVNWGLYLNTLFWNLNYWDSISTLVGEVEDPGKTLPRALFYALILVVFAYF 251
RW ++DL NV+W LYLNTLFWNLNYWDSISTL GEV++PGKTLP+ALFYA+I VV AY
Sbjct: 250 ARWLVIDLHNVDWNLYLNTLFWNLNYWDSISTLAGEVKNPGKTLPKALFYAVIFVVVAYL 309
Query: 252 FPLLIGTGAAPVHRELWSDGYFSVIAKLIGGVWLRTWIQGASAVSNMGMFIAEMSSDSFQ 311
+PLL GTGA P+ R W+DGYF+ IAKL+GG WL W+Q A+A+SNMGMF+AEMSSDS+Q
Sbjct: 310 YPLLAGTGAVPLDRGQWTDGYFADIAKLLGGAWLMWWVQSAAALSNMGMFVAEMSSDSYQ 369
Query: 312 LLGMAERGMLPEIFARRSQYGTPLVGILFSASGVILLSWLSFQEIVAAENFLYCFAMIME 371
LLGMAERGMLP FA RS+YGTPL GILFSASGV+LLS +SFQEIVAAENFLYCF M++E
Sbjct: 370 LLGMAERGMLPSFFAARSRYGTPLAGILFSASGVLLLSMMSFQEIVAAENFLYCFGMLLE 429
Query: 372 FIAFVKLRMQYPEAIRPYKVPLGTVGAILLCIPPTLLILVVLALASPKVMAISVIAVLIG 431
F+AF+ R++ P+A RPY+VPLGT G + + +PPT LI VVLAL++ KV +S+ AV +G
Sbjct: 430 FVAFILHRVRRPDAARPYRVPLGTAGCVAMLVPPTALIAVVLALSTLKVAVVSLGAVAMG 489
Query: 432 FFIQPCMTYAEKRQWFRFSMSSDLPDI 458
+QP + + EK++W RFS++ DLP+I
Sbjct: 490 LVLQPALRFVEKKRWLRFSVNPDLPEI 516
|
Cell membrane polyamine/proton symporter involved in the polyamine uptake in cells. Possesses high affinity for spermidine and lower affinity for spermine and putrescine. Transports paraquat, a polyamine analog, and thus confers sensitivity to this chemical which is used as herbicide. Oryza sativa subsp. indica (taxid: 39946) |
| >sp|Q9C6S4|PHSA_ARATH Probable polyamine transporter At1g31820 OS=Arabidopsis thaliana GN=At1g31820 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 617 bits (1592), Expect = e-176, Method: Compositional matrix adjust.
Identities = 299/449 (66%), Positives = 371/449 (82%)
Query: 20 ERFQKVSVIPLVFLIFYEVSGGPFGVEDSVMAAGPLLALIGFLFFPFIWSIPEALITAEM 79
QKVS++PLVFLIFYEVSGGPFG E SV AAGPLLAL+GF+ FPFIW IPEALITAEM
Sbjct: 31 NSIQKVSMLPLVFLIFYEVSGGPFGAEGSVNAAGPLLALLGFVIFPFIWCIPEALITAEM 90
Query: 80 GTMFPENGGYVVWVASALGPHWGFQQGWMKWLSGVIDNALYPVLFLDYLKSAIPALEGGF 139
TMFP NGG+VVWV+SALG WGFQ GWMKWL GVIDNALYPVLFLDYLKSA+PAL G
Sbjct: 91 STMFPINGGFVVWVSSALGTFWGFQVGWMKWLCGVIDNALYPVLFLDYLKSAVPALATGL 150
Query: 140 PRIVAVLLLTTALTYMNYRGLTIVGWVAIVLGVFSLVPFALMGLIAIPRLKPWRWCMVDL 199
PR+ ++L+LT LTY+NYRGLTIVGW A+ +GVFS++PFA+M L++IP+L+P RW ++DL
Sbjct: 151 PRVASILILTLLLTYLNYRGLTIVGWTAVFMGVFSMLPFAVMSLVSIPQLEPSRWLVMDL 210
Query: 200 KNVNWGLYLNTLFWNLNYWDSISTLVGEVEDPGKTLPRALFYALILVVFAYFFPLLIGTG 259
NVNW LYLNTL WNLNYWDS+STL GEV +P KTLP+AL Y +I V + F PLL GTG
Sbjct: 211 GNVNWNLYLNTLLWNLNYWDSVSTLAGEVANPKKTLPKALCYGVIFVALSNFLPLLSGTG 270
Query: 260 AAPVHRELWSDGYFSVIAKLIGGVWLRTWIQGASAVSNMGMFIAEMSSDSFQLLGMAERG 319
A P+ RELW+DGY + +AK IGG WL+ W+Q A+A SNMGMF+AEMSSDSFQLLGMAE G
Sbjct: 271 AIPLDRELWTDGYLAEVAKAIGGGWLQLWVQAAAATSNMGMFLAEMSSDSFQLLGMAELG 330
Query: 320 MLPEIFARRSQYGTPLVGILFSASGVILLSWLSFQEIVAAENFLYCFAMIMEFIAFVKLR 379
+LPEIFA+RS+YGTPL+GILFSASGV+LLS LSFQEI+AAEN LYC MI+EFIAFV+LR
Sbjct: 331 ILPEIFAQRSRYGTPLLGILFSASGVLLLSGLSFQEIIAAENLLYCGGMILEFIAFVRLR 390
Query: 380 MQYPEAIRPYKVPLGTVGAILLCIPPTLLILVVLALASPKVMAISVIAVLIGFFIQPCMT 439
++P A RPYK+P+GTVG+IL+C+PP +LI +V+ L++ KV +S + V+IGF ++PC+
Sbjct: 391 KKHPAASRPYKIPVGTVGSILICVPPIVLICLVIVLSTIKVALVSFVMVVIGFLMKPCLN 450
Query: 440 YAEKRQWFRFSMSSDLPDILSASADPQHN 468
+ + ++W +FS+ SDL + + D + +
Sbjct: 451 HMDGKKWVKFSVCSDLAEFQKENLDCEES 479
|
Probable cell membrane polyamine/proton symporter involved in the polyamine uptake in cells. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LH39|PHSD_ARATH Probable polyamine transporter At3g19553 OS=Arabidopsis thaliana GN=At3g19553 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 523 bits (1348), Expect = e-148, Method: Compositional matrix adjust.
Identities = 259/462 (56%), Positives = 345/462 (74%), Gaps = 3/462 (0%)
Query: 11 LGEDSSPKLERFQKVSVIPLVFLIFYEVSGGPFGVEDSVMAAGPLLALIGFL-FFPFIWS 69
+ +++S K + K++++PLVFLIFYEVSGGPFGVEDSV + G L + FP IWS
Sbjct: 8 VNDENSSKPKPSPKLTLLPLVFLIFYEVSGGPFGVEDSVKSGGGPLLALLGFLIFPLIWS 67
Query: 70 IPEALITAEMGTMFPENGGYVVWVASALGPHWGFQQGWMKWLSGVIDNALYPVLFLDYLK 129
IPEAL+TAE+ T FPENGGYVVW++SA GP WGFQ+G+ KW SGV+DNALYPVLFLDYLK
Sbjct: 68 IPEALVTAELATSFPENGGYVVWISSAFGPFWGFQEGFWKWFSGVMDNALYPVLFLDYLK 127
Query: 130 SAIPALEGGFPRIVAVLLLTTALTYMNYRGLTIVGWVAIVLGVFSLVPFALMGLIAIPRL 189
+ P L+ R+ A+L++T +LTY+NYRGL IVG+ A+VL VFSL PF +M L+A+P +
Sbjct: 128 HSFPVLDHVAARVPALLVITFSLTYLNYRGLHIVGFSAVVLAVFSLCPFVVMALLAVPNI 187
Query: 190 KPWRWCMVDLKNVNWGLYLNTLFWNLNYWDSISTLVGEVEDPGKTLPRALFYALILVVFA 249
+P RW VD + +NW Y NT+FWNLNYWD STL GEV+ PGKT P+ALF A++LV+ +
Sbjct: 188 RPKRWLFVDTQKINWRGYFNTMFWNLNYWDKASTLAGEVDRPGKTFPKALFGAVLLVMGS 247
Query: 250 YFFPLLIGTGA-APVHRELWSDGYFSVIAKLIGGVWLRTWIQGASAVSNMGMFIAEMSSD 308
Y PL+ GTGA + WSDGYF+ + LIGGVWL+ WIQ A+A+SN+G+F AEMSSD
Sbjct: 248 YLIPLMAGTGALSSSTSGEWSDGYFAEVGMLIGGVWLKGWIQAAAAMSNLGLFEAEMSSD 307
Query: 309 SFQLLGMAERGMLPEIFARRSQYGTPLVGILFSASGVILLSWLSFQEIVAAENFLYCFAM 368
+FQLLGM+E GMLP FA+RS+YGTP + IL SA+GVI LSW+SFQEI+ NFLY M
Sbjct: 308 AFQLLGMSEIGMLPAFFAQRSKYGTPTISILCSATGVIFLSWMSFQEIIEFLNFLYALGM 367
Query: 369 IMEFIAFVKLRMQYPEAIRPYKVPLGTVGAILLCIPPTLLILVVLALASPKVMAISVIAV 428
++EF AFVKLR++ P+ RPY+VPL T G +LC+PP+LL+++V+ LA+PK IS + +
Sbjct: 368 LLEFAAFVKLRIKKPDLHRPYRVPLNTFGVSMLCLPPSLLVILVMVLAAPKTFLISGVII 427
Query: 429 LIGFFIQPCMTYAEKRQWFRFSMSSDLPDILSASADPQHNES 470
++GF + P +T +++QW RF P + S++ Q +E
Sbjct: 428 VLGFCLYPFLTLVKEKQWARFIPEETRP-VSGVSSESQLDEE 468
|
Probable cell membrane polyamine/proton symporter involved in the polyamine uptake in cells. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LHN7|PHSC_ARATH Probable polyamine transporter At3g13620 OS=Arabidopsis thaliana GN=At3g13620 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 405 bits (1042), Expect = e-112, Method: Compositional matrix adjust.
Identities = 209/457 (45%), Positives = 304/457 (66%), Gaps = 8/457 (1%)
Query: 14 DSSPKLERFQKVSVIPLVFLIFYEVSGGPFGVEDSVMAAGPLLALIGFLFFPFIWSIPEA 73
+SS K +K+++IPLVFLI++EV+GGPFG E +V AAGPLLA++GFL FPFIWSIPEA
Sbjct: 19 ESSGKKATAKKLTLIPLVFLIYFEVAGGPFGEEPAVQAAGPLLAILGFLIFPFIWSIPEA 78
Query: 74 LITAEMGTMFPENGGYVVWVASALGPHWGFQQGWMKWLSGVIDNALYPVLFLDYLKSAIP 133
LITAE+ T FP NGG+V+W A G G G +K+LSGVI+ A +PVL + YL P
Sbjct: 79 LITAELSTAFPGNGGFVIWAHRAFGSFVGSMMGSLKFLSGVINVASFPVLCVTYLDKLFP 138
Query: 134 ALEGGFPRIVAVLLLTTALTYMNYRGLTIVGWVAIVLGVFSLVPFALMGLIAIPRLKPWR 193
LE G+PR V + T L+++NY GL IVG+ A+VLG+ SL PF +M +AIP++KP R
Sbjct: 139 VLESGWPRNVCIFASTVVLSFLNYTGLAIVGYAAVVLGLVSLSPFLVMSAMAIPKIKPHR 198
Query: 194 WCMVDLKNVNWGLYLNTLFWNLNYWDSISTLVGEVEDPGKTLPRALFYALILVVFAYFFP 253
W + K +W LY NTLFWNLN+WD++STL GEV++P KT P AL A+I AY P
Sbjct: 199 WGSLGTKKKDWNLYFNTLFWNLNFWDNVSTLAGEVDEPQKTFPLALLIAVIFTCVAYLIP 258
Query: 254 LLIGTGAAPVHRELWSDGYFSVIAKLIGGVWLRTWIQGASAVSNMGMFIAEMSSDSFQLL 313
L TGA V + W +G+ + A++I G WL+ WI+ + +S++G+F A++SS ++QL
Sbjct: 259 LFAVTGAVSVDQSRWENGFHAEAAEMIAGKWLKIWIEIGAVLSSIGLFEAQLSSSAYQLE 318
Query: 314 GMAERGMLPEIFARRSQ-YGTPLVGILFSASGVILLSWLSFQEIVAAENFLYCFAMIMEF 372
GMAE G LP+ F RS+ + TP VGIL SA + LS+++F +I+++ NFLY M +EF
Sbjct: 319 GMAELGFLPKFFGVRSKWFNTPWVGILISALMSLGLSYMNFTDIISSANFLYTLGMFLEF 378
Query: 373 IAFVKLRMQYPEAIRPYKVPLGTVGAILLCIPPTLLILVVLALASPKVMAISVIAVL--I 430
+F+ LR + P+ RPY+VPL G +++C+ P+ ++++L A+ V I + + I
Sbjct: 379 ASFIWLRRKLPQLKRPYRVPLKIPGLVVMCLIPSAFLVLILVFATKIVYLICGVMTIGAI 438
Query: 431 GFFIQPCMTYAEKRQWFRFSMSSDLPDILSASADPQH 467
G++ + Y K + F F +++ D L + + +H
Sbjct: 439 GWYF--LINYFRKTKIFEF---NEVIDDLDNNVNGEH 470
|
Probable cell membrane polyamine/proton symporter involved in the polyamine uptake in cells. Arabidopsis thaliana (taxid: 3702) |
| >sp|P37034|Y1691_LEGPH Uncharacterized transporter lpg1691 OS=Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513) GN=lpg1691 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 72.8 bits (177), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 100/388 (25%), Positives = 175/388 (45%), Gaps = 61/388 (15%)
Query: 54 PLLALIGF-LFFPFIWS-----IPEALITAEMGTMFPENGGYVVWVASALGPHWGFQQGW 107
P+ A +GF L F +I++ IP AL+ AE+ T +P GG VWV A G GF W
Sbjct: 28 PISAKLGFSLVFYYIFAALTFFIPVALVAAELATAYPNTGGIYVWVREAFGRRAGFITIW 87
Query: 108 MKWLSGVIDNALYPVLF------LDYLKSAIPAL-EGGFPRIVAVLLLTTALTYMNYRGL 160
++W+ V+ YP + L YL + P L F + L L T++N G+
Sbjct: 88 LQWIYNVV---WYPTMLAFIAATLSYLIA--PHLGNNKFYLLGTALTLFWVFTFLNCFGM 142
Query: 161 TIVGWVAIV-LGVFSLVP---FALMGLIAIPRLK------PWRWCMVDLKNV-NWGLYLN 209
+ V+I+ + +L+P ++G + I + + P W + D ++ N L+
Sbjct: 143 KLSSIVSIIGASIGTLLPMIVIIVLGAVWIFQDRPVAVNYPTTW-LPDFSSLGNLSLFSA 201
Query: 210 TLFWNLNYWDSISTLVGEVEDPGKTLPRALFYALILVVFAYFFPLLIGTGAAPVHRELWS 269
LF L + + EV++P + P+ALFY+ +L++ + G+ + + +
Sbjct: 202 VLF-GLIGMEMSAVHAEEVKNPQRDYPKALFYSALLIIST------LSLGSLAIVIVVPN 254
Query: 270 DGYFSVIAKLIGGV----------WLRTWIQGASAVSNMGMFIAEMSSDSFQLLGMAERG 319
D SV++ L+ W+ + I + + A + + LL A G
Sbjct: 255 DS-LSVVSGLVDAYAIFFNSYNMPWMTSVIAVLIILGGLSGVSAWIIGPTKGLLVSARDG 313
Query: 320 MLPEIFARRSQYGTPLV-----GILFSASGVILLSWLSFQEI------VAAENFLYCFAM 368
LP +F+R ++YG+P+ G++F+ + + S ++A+ L +
Sbjct: 314 SLPALFSRVNKYGSPVAILLTQGVIFTVLSTVFILLDSINAAYWVLSDLSAQMALLVY-- 371
Query: 369 IMEFIAFVKLRMQYPEAIRPYKVPLGTV 396
IM F A +KLR PE R Y +P G +
Sbjct: 372 IMMFAAAIKLRYSKPEQPRGYTIPGGNL 399
|
Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513) (taxid: 272624) |
| >sp|Q5RKI7|S7A13_RAT Solute carrier family 7 member 13 OS=Rattus norvegicus GN=Slc7a13 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 70.5 bits (171), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 83/347 (23%), Positives = 144/347 (41%), Gaps = 26/347 (7%)
Query: 64 FPFIWSIPEALITAEMGTMFPENGGYVVWVASALGPHWGFQQGWMKWLSGVIDNALYPVL 123
F + S+ L AE+G FP + ++ GP F + W +G A +L
Sbjct: 57 FCAVLSMTSTLCAAEIGITFPYTVAHYYFLKRCFGPFVAFLRLWTSLFTGPGVLASQALL 116
Query: 124 FLDY-LKSAIPALEG-GFPRIVAVLLLTTALTYMNYRGLTIVGWVAIV-----LGVFSLV 176
+Y ++ P+ P+ L + + +N RG+ + W+ V +G+ S +
Sbjct: 117 LAEYGIQPFYPSCSAPAVPKKCLALAMLWIVGILNSRGVKELSWLQTVSMVLKMGILSFI 176
Query: 177 PFALMGLIAIPRLKPWRWCM--VDLKNVNWGLYLNTLF---WNLNYWDSISTLVGEVEDP 231
+ + L+ R + R D + + +F + + S + + GE+++P
Sbjct: 177 SLSGLFLLVTGRKENVRRLQNAFDAEFPEVSRLIEAIFQGYFAFSGGGSFTYVAGELKEP 236
Query: 232 GKTLPRALFYALILVVFAYFFPLLIGTGAAPVHRELWSDGYF-----SVIAKLIGGVWLR 286
KT+PR +F AL LV Y L L SD VI +L W
Sbjct: 237 SKTIPRCIFTALPLVTVVYLLANLSYLTVLSPQELLSSDAVALTWTDRVIPQL---TWSV 293
Query: 287 TWIQGASAVSNMGMFIAEMSSDSFQLLGMAER-GMLPEIFARRSQYGTPLVGILFSAS-G 344
+ AS SN+ + E S S+ +A R G LP + + + + +P + +L S G
Sbjct: 294 PFAISASLFSNLVTSVFETSRTSY----IASRNGQLPLLCSTLNVHSSPFIAVLLDVSMG 349
Query: 345 VILLSWLSFQEIVAAENFLYCFAMIMEFIAFVKLRMQYPEAIRPYKV 391
I + + E++ F++ ++ I +KLR Q P RPYKV
Sbjct: 350 SIAIVLTNLIELINYLFFVFSIWTVLSVIGILKLRYQEPNLHRPYKV 396
|
Mediates the transport L-aspartate and L-glutamate in a sodium-independent manner. Rattus norvegicus (taxid: 10116) |
| >sp|Q91WN3|S7A13_MOUSE Solute carrier family 7 member 13 OS=Mus musculus GN=Slc7a13 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 68.9 bits (167), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 103/440 (23%), Positives = 176/440 (40%), Gaps = 57/440 (12%)
Query: 67 IWSIPEALITAEMGTMFPENGGYVVWVASALGPHWGFQQGWMKWLSGVIDNALYPVLFLD 126
+ ++ AL +AE+G FP +G + ++ GP F + W G A +L +
Sbjct: 60 VLTLTSALCSAEIGITFPYSGAHYYFLKRCFGPLVAFLRLWTSLFLGPGLIASQALLLAE 119
Query: 127 Y-LKSAIPALEGG-FPRIVAVLLLTTALTYMNYRGLTIVGWVAIVLGVFSLVPFALMGLI 184
Y ++ P+ PR L + + +N RG+ + W+ V V + ++G+I
Sbjct: 120 YGVQPFYPSCSAPILPRKCLALAMLWIVGILNSRGVKELSWLQTVSSVLKV---GILGVI 176
Query: 185 AIPRLKPWRWCMVDLKNVNWGLYLNTL-----------------FWNLNYWDSISTLVGE 227
++ L + +V K N N ++ + + + GE
Sbjct: 177 SLSGL----FLLVRGKKENVQRLQNAFDAEFPEVSQLIEAIFQGYFAFSGGGCFTCIAGE 232
Query: 228 VEDPGKTLPRALFYALILVVFAYFFPLLIGTGAAPVHRELWSDGYF-----SVIAKLIGG 282
++ P KT+PR +F L LV Y + L SD VI +
Sbjct: 233 LKKPSKTIPRCIFTGLPLVTVVYLLANISYLTVLTPQEMLSSDAVALTWTDRVIPQF--- 289
Query: 283 VWLRTWIQGASAVSNMGMFIAEMSSDSFQLLGMAERGMLPEIFARRSQYGTPLVGILFSA 342
W + AS N+ + + E S L +E G LP +F + + +P + +L
Sbjct: 290 TWTVPFAISASLFINLVINVLETSR---VLYIASENGQLPLLFCALNVHSSPFIAVLLII 346
Query: 343 SGVILLSWLSFQEIVAAENFLYCFAMI---MEFIAFVKLRMQYPEAIRPYKVPLGTVGAI 399
S +L L+ ++ N+LY I + I +KLR Q P RPYKV L
Sbjct: 347 SMASILIVLT--NLIDLINYLYFVVSIWTALSIIGILKLRYQEPNLHRPYKVFLPFT--- 401
Query: 400 LLCIPPTLLILVVLALASPKVMAISVIAVLIG--FFIQPCMTYAEKRQWF-------RFS 450
+ + TL ++++ + SPK+ I V L+ F P + + K WF +
Sbjct: 402 FIALGITLSLVLIPLVKSPKLHYIYVFLFLLSGLVFYVPLIHFKVKFVWFQKLTCYLQLL 461
Query: 451 MSSDLPDILSASADPQHNES 470
+ +PD+ S D H ES
Sbjct: 462 FNICIPDV---SDDHIHEES 478
|
Mediates the transport L-aspartate and L-glutamate in a sodium-independent manner. Mus musculus (taxid: 10090) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 470 | ||||||
| 255557699 | 486 | amino acid transporter, putative [Ricinu | 0.985 | 0.952 | 0.762 | 0.0 | |
| 359475003 | 483 | PREDICTED: uncharacterized transporter l | 0.980 | 0.954 | 0.800 | 0.0 | |
| 225428102 | 469 | PREDICTED: uncharacterized transporter l | 0.974 | 0.976 | 0.805 | 0.0 | |
| 224080658 | 462 | neutral amino acid transport protein [Po | 0.976 | 0.993 | 0.827 | 0.0 | |
| 255538860 | 455 | amino acid transporter, putative [Ricinu | 0.968 | 1.0 | 0.813 | 0.0 | |
| 449453310 | 473 | PREDICTED: probable polyamine transporte | 0.985 | 0.978 | 0.745 | 0.0 | |
| 225427498 | 475 | PREDICTED: uncharacterized transporter l | 0.936 | 0.926 | 0.770 | 0.0 | |
| 224074521 | 473 | neutral amino acid transport protein [Po | 0.985 | 0.978 | 0.741 | 0.0 | |
| 297744564 | 979 | unnamed protein product [Vitis vinifera] | 0.936 | 0.449 | 0.770 | 0.0 | |
| 297851622 | 494 | amino acid permease family protein [Arab | 0.993 | 0.945 | 0.702 | 0.0 |
| >gi|255557699|ref|XP_002519879.1| amino acid transporter, putative [Ricinus communis] gi|223540925|gb|EEF42483.1| amino acid transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 740 bits (1911), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 353/463 (76%), Positives = 415/463 (89%)
Query: 2 ESNNVHYVQLGEDSSPKLERFQKVSVIPLVFLIFYEVSGGPFGVEDSVMAAGPLLALIGF 61
E+N +YV + E SPKL ++KVSV+PLVFLIFYEVSGGPFGVEDSV AAGPLLAL+GF
Sbjct: 17 ETNVANYVDIDEVPSPKLHNYKKVSVLPLVFLIFYEVSGGPFGVEDSVQAAGPLLALLGF 76
Query: 62 LFFPFIWSIPEALITAEMGTMFPENGGYVVWVASALGPHWGFQQGWMKWLSGVIDNALYP 121
L FP IWSIPEALITAEMGTMFPENGGYVVWV+SALGP+WGFQQGWMKWLSGVIDNALYP
Sbjct: 77 LVFPLIWSIPEALITAEMGTMFPENGGYVVWVSSALGPYWGFQQGWMKWLSGVIDNALYP 136
Query: 122 VLFLDYLKSAIPALEGGFPRIVAVLLLTTALTYMNYRGLTIVGWVAIVLGVFSLVPFALM 181
VLFLDYLKS IPAL GGFPR A L+LT LTYMNYRGLTIVGWVA++LGVFS++PF +M
Sbjct: 137 VLFLDYLKSGIPALGGGFPRTAAALVLTFVLTYMNYRGLTIVGWVAVLLGVFSILPFLVM 196
Query: 182 GLIAIPRLKPWRWCMVDLKNVNWGLYLNTLFWNLNYWDSISTLVGEVEDPGKTLPRALFY 241
G++AIP++ P RW +V+L +V+W LYLNTLFWNLNYWDSISTL GEV++P KTLP+ALFY
Sbjct: 197 GMVAIPKMDPSRWLVVNLHDVDWNLYLNTLFWNLNYWDSISTLAGEVDNPKKTLPKALFY 256
Query: 242 ALILVVFAYFFPLLIGTGAAPVHRELWSDGYFSVIAKLIGGVWLRTWIQGASAVSNMGMF 301
ALILVV +YFFPLL+GTGA P++R++W+DGYFS IAK++GGVWLR WIQGA+A+SNMGMF
Sbjct: 257 ALILVVLSYFFPLLVGTGAVPLNRDMWTDGYFSDIAKMLGGVWLRWWIQGAAAMSNMGMF 316
Query: 302 IAEMSSDSFQLLGMAERGMLPEIFARRSQYGTPLVGILFSASGVILLSWLSFQEIVAAEN 361
+AEMSSDSFQLLGMAERGMLPE FARRS+YGTPL+GILFSASGVILLSWLSFQEIVAAEN
Sbjct: 317 VAEMSSDSFQLLGMAERGMLPEFFARRSRYGTPLIGILFSASGVILLSWLSFQEIVAAEN 376
Query: 362 FLYCFAMIMEFIAFVKLRMQYPEAIRPYKVPLGTVGAILLCIPPTLLILVVLALASPKVM 421
FLYCF MI+EFIAFV+LR++ P A RPYK+P+GTVGAIL+CIPPT+LI VVLAL++ KVM
Sbjct: 377 FLYCFGMILEFIAFVQLRIRQPAASRPYKIPVGTVGAILMCIPPTILICVVLALSTIKVM 436
Query: 422 AISVIAVLIGFFIQPCMTYAEKRQWFRFSMSSDLPDILSASAD 464
+S+IAV IG +QPC+ YAEK++W +FS +LPD+ +A+ +
Sbjct: 437 VVSLIAVAIGLVLQPCLKYAEKKRWMKFSAREELPDLPNANQE 479
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359475003|ref|XP_003631566.1| PREDICTED: uncharacterized transporter lpg1691 isoform 2 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 739 bits (1907), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 369/461 (80%), Positives = 416/461 (90%)
Query: 1 MESNNVHYVQLGEDSSPKLERFQKVSVIPLVFLIFYEVSGGPFGVEDSVMAAGPLLALIG 60
++ N YV L +D+SPK + F+KVS+IPLVFLIFYEVSGGPFGVED+V AAGPLLAL+G
Sbjct: 13 VQMRNAEYVGLEDDASPKYDNFKKVSIIPLVFLIFYEVSGGPFGVEDTVQAAGPLLALLG 72
Query: 61 FLFFPFIWSIPEALITAEMGTMFPENGGYVVWVASALGPHWGFQQGWMKWLSGVIDNALY 120
FL FP IWSIPEALITAEMGTMFPENGGYVVWV+SALGP+WGFQQGWMKWLSGVIDNALY
Sbjct: 73 FLLFPVIWSIPEALITAEMGTMFPENGGYVVWVSSALGPYWGFQQGWMKWLSGVIDNALY 132
Query: 121 PVLFLDYLKSAIPALEGGFPRIVAVLLLTTALTYMNYRGLTIVGWVAIVLGVFSLVPFAL 180
PVLFLDYLKSAIP LEGG PRI+AVL LT ALTYMNYRGLTIVGWVA++LGVFS++PF +
Sbjct: 133 PVLFLDYLKSAIPGLEGGLPRIIAVLALTLALTYMNYRGLTIVGWVAVLLGVFSILPFVV 192
Query: 181 MGLIAIPRLKPWRWCMVDLKNVNWGLYLNTLFWNLNYWDSISTLVGEVEDPGKTLPRALF 240
MGL+AIP L+P RW ++DL NVNWGLYLNTLFWNLNYWDSISTL GEVE+P KTLP+ALF
Sbjct: 193 MGLVAIPELEPSRWFVIDLHNVNWGLYLNTLFWNLNYWDSISTLAGEVENPNKTLPKALF 252
Query: 241 YALILVVFAYFFPLLIGTGAAPVHRELWSDGYFSVIAKLIGGVWLRTWIQGASAVSNMGM 300
YALILVV YF PLL+GTGA P+ RE+W DGYF+ IAK++GG+WLR+WIQGASA+SNMGM
Sbjct: 253 YALILVVLGYFVPLLVGTGAIPLDREMWVDGYFADIAKILGGIWLRSWIQGASALSNMGM 312
Query: 301 FIAEMSSDSFQLLGMAERGMLPEIFARRSQYGTPLVGILFSASGVILLSWLSFQEIVAAE 360
F+AEMSSDSFQLLGMAERGMLP+ FA+RS+YGTPL GILFSASGVILLSWLSFQEIVAAE
Sbjct: 313 FVAEMSSDSFQLLGMAERGMLPDFFAKRSRYGTPLTGILFSASGVILLSWLSFQEIVAAE 372
Query: 361 NFLYCFAMIMEFIAFVKLRMQYPEAIRPYKVPLGTVGAILLCIPPTLLILVVLALASPKV 420
NFLYCF MIMEFIAFVKLRM+YP A RPY +P+GT GAIL+CIPPTLLI VVLALAS KV
Sbjct: 373 NFLYCFGMIMEFIAFVKLRMRYPAASRPYMIPVGTTGAILMCIPPTLLICVVLALASFKV 432
Query: 421 MAISVIAVLIGFFIQPCMTYAEKRQWFRFSMSSDLPDILSA 461
M IS++AV+IG +QPC+ YAEK++W RFSMSSDLPD SA
Sbjct: 433 MVISLLAVMIGLVMQPCLLYAEKKRWLRFSMSSDLPDFHSA 473
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225428102|ref|XP_002280603.1| PREDICTED: uncharacterized transporter lpg1691 isoform 1 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 738 bits (1904), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 369/458 (80%), Positives = 414/458 (90%)
Query: 4 NNVHYVQLGEDSSPKLERFQKVSVIPLVFLIFYEVSGGPFGVEDSVMAAGPLLALIGFLF 63
N YV L +D+SPK + F+KVS+IPLVFLIFYEVSGGPFGVED+V AAGPLLAL+GFL
Sbjct: 2 RNAEYVGLEDDASPKYDNFKKVSIIPLVFLIFYEVSGGPFGVEDTVQAAGPLLALLGFLL 61
Query: 64 FPFIWSIPEALITAEMGTMFPENGGYVVWVASALGPHWGFQQGWMKWLSGVIDNALYPVL 123
FP IWSIPEALITAEMGTMFPENGGYVVWV+SALGP+WGFQQGWMKWLSGVIDNALYPVL
Sbjct: 62 FPVIWSIPEALITAEMGTMFPENGGYVVWVSSALGPYWGFQQGWMKWLSGVIDNALYPVL 121
Query: 124 FLDYLKSAIPALEGGFPRIVAVLLLTTALTYMNYRGLTIVGWVAIVLGVFSLVPFALMGL 183
FLDYLKSAIP LEGG PRI+AVL LT ALTYMNYRGLTIVGWVA++LGVFS++PF +MGL
Sbjct: 122 FLDYLKSAIPGLEGGLPRIIAVLALTLALTYMNYRGLTIVGWVAVLLGVFSILPFVVMGL 181
Query: 184 IAIPRLKPWRWCMVDLKNVNWGLYLNTLFWNLNYWDSISTLVGEVEDPGKTLPRALFYAL 243
+AIP L+P RW ++DL NVNWGLYLNTLFWNLNYWDSISTL GEVE+P KTLP+ALFYAL
Sbjct: 182 VAIPELEPSRWFVIDLHNVNWGLYLNTLFWNLNYWDSISTLAGEVENPNKTLPKALFYAL 241
Query: 244 ILVVFAYFFPLLIGTGAAPVHRELWSDGYFSVIAKLIGGVWLRTWIQGASAVSNMGMFIA 303
ILVV YF PLL+GTGA P+ RE+W DGYF+ IAK++GG+WLR+WIQGASA+SNMGMF+A
Sbjct: 242 ILVVLGYFVPLLVGTGAIPLDREMWVDGYFADIAKILGGIWLRSWIQGASALSNMGMFVA 301
Query: 304 EMSSDSFQLLGMAERGMLPEIFARRSQYGTPLVGILFSASGVILLSWLSFQEIVAAENFL 363
EMSSDSFQLLGMAERGMLP+ FA+RS+YGTPL GILFSASGVILLSWLSFQEIVAAENFL
Sbjct: 302 EMSSDSFQLLGMAERGMLPDFFAKRSRYGTPLTGILFSASGVILLSWLSFQEIVAAENFL 361
Query: 364 YCFAMIMEFIAFVKLRMQYPEAIRPYKVPLGTVGAILLCIPPTLLILVVLALASPKVMAI 423
YCF MIMEFIAFVKLRM+YP A RPY +P+GT GAIL+CIPPTLLI VVLALAS KVM I
Sbjct: 362 YCFGMIMEFIAFVKLRMRYPAASRPYMIPVGTTGAILMCIPPTLLICVVLALASFKVMVI 421
Query: 424 SVIAVLIGFFIQPCMTYAEKRQWFRFSMSSDLPDILSA 461
S++AV+IG +QPC+ YAEK++W RFSMSSDLPD SA
Sbjct: 422 SLLAVMIGLVMQPCLLYAEKKRWLRFSMSSDLPDFHSA 459
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224080658|ref|XP_002306199.1| neutral amino acid transport protein [Populus trichocarpa] gi|222849163|gb|EEE86710.1| neutral amino acid transport protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 731 bits (1887), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 380/459 (82%), Positives = 418/459 (91%)
Query: 2 ESNNVHYVQLGEDSSPKLERFQKVSVIPLVFLIFYEVSGGPFGVEDSVMAAGPLLALIGF 61
E NN YV LGE S P L++FQKVSVIPLVFLIFYEVSGGPFGVEDSV AAGPLLAL+GF
Sbjct: 3 EPNNAGYVALGEASFPTLDKFQKVSVIPLVFLIFYEVSGGPFGVEDSVQAAGPLLALLGF 62
Query: 62 LFFPFIWSIPEALITAEMGTMFPENGGYVVWVASALGPHWGFQQGWMKWLSGVIDNALYP 121
L FP +WSIPEALITAEMGTMFPENGGYVVWV+SALGP+WGFQQGWMKWLSGVIDNALYP
Sbjct: 63 LLFPLVWSIPEALITAEMGTMFPENGGYVVWVSSALGPYWGFQQGWMKWLSGVIDNALYP 122
Query: 122 VLFLDYLKSAIPALEGGFPRIVAVLLLTTALTYMNYRGLTIVGWVAIVLGVFSLVPFALM 181
VLFLDYLKSAIPALEGG PRIVAVL LT ALTYMNYRGL+IVGWVAI+LGVFSL+PF LM
Sbjct: 123 VLFLDYLKSAIPALEGGIPRIVAVLALTAALTYMNYRGLSIVGWVAILLGVFSLLPFVLM 182
Query: 182 GLIAIPRLKPWRWCMVDLKNVNWGLYLNTLFWNLNYWDSISTLVGEVEDPGKTLPRALFY 241
GL+AIP+L+P RW +VD NV+WGLYLNTLFWNLNYWDSISTL GEVE+P KTLP+ALFY
Sbjct: 183 GLVAIPKLEPSRWFVVDFSNVDWGLYLNTLFWNLNYWDSISTLAGEVENPNKTLPKALFY 242
Query: 242 ALILVVFAYFFPLLIGTGAAPVHRELWSDGYFSVIAKLIGGVWLRTWIQGASAVSNMGMF 301
ALILVV AYFFPLLIGTGA P+ +E+WSDGYFS IAK++GGVWLR+WIQGASA SNMGMF
Sbjct: 243 ALILVVSAYFFPLLIGTGAVPLDQEMWSDGYFSEIAKILGGVWLRSWIQGASAFSNMGMF 302
Query: 302 IAEMSSDSFQLLGMAERGMLPEIFARRSQYGTPLVGILFSASGVILLSWLSFQEIVAAEN 361
+AEMSSDSFQLLGMAERGMLPEIF +RS+YGTPL GILFSASGVILLSWLSFQEIVAAEN
Sbjct: 303 VAEMSSDSFQLLGMAERGMLPEIFGKRSRYGTPLTGILFSASGVILLSWLSFQEIVAAEN 362
Query: 362 FLYCFAMIMEFIAFVKLRMQYPEAIRPYKVPLGTVGAILLCIPPTLLILVVLALASPKVM 421
FLYCF MIMEFIAFVKLRM YP A RPYK+P+GTVGAIL+CIPPTLLILVVL LAS KVM
Sbjct: 363 FLYCFGMIMEFIAFVKLRMDYPAAPRPYKIPVGTVGAILICIPPTLLILVVLTLASLKVM 422
Query: 422 AISVIAVLIGFFIQPCMTYAEKRQWFRFSMSSDLPDILS 460
AIS +A+++G ++PC+ YAEK++WFRFS +SDL I S
Sbjct: 423 AISSVALIVGLIMKPCLDYAEKKRWFRFSKNSDLSSIHS 461
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255538860|ref|XP_002510495.1| amino acid transporter, putative [Ricinus communis] gi|223551196|gb|EEF52682.1| amino acid transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 724 bits (1870), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 370/455 (81%), Positives = 411/455 (90%)
Query: 1 MESNNVHYVQLGEDSSPKLERFQKVSVIPLVFLIFYEVSGGPFGVEDSVMAAGPLLALIG 60
ME NNV YV LGE S PK ++FQKVS+IPLVFLIFYEVSGGPFGVEDSV AAGP LAL+G
Sbjct: 1 MEPNNVEYVVLGEASQPKTDKFQKVSIIPLVFLIFYEVSGGPFGVEDSVKAAGPFLALLG 60
Query: 61 FLFFPFIWSIPEALITAEMGTMFPENGGYVVWVASALGPHWGFQQGWMKWLSGVIDNALY 120
F FPFIWSIPEALITAEMGTMFPENGGYVVWV+SALGP+WGFQ+GWMKWLSGVIDNALY
Sbjct: 61 FSIFPFIWSIPEALITAEMGTMFPENGGYVVWVSSALGPYWGFQEGWMKWLSGVIDNALY 120
Query: 121 PVLFLDYLKSAIPALEGGFPRIVAVLLLTTALTYMNYRGLTIVGWVAIVLGVFSLVPFAL 180
PVLFLDYLKSAIPALE GFPRI A+L LT ALTYMNYRGLTIVGW+AI+LGVFSL+PF +
Sbjct: 121 PVLFLDYLKSAIPALENGFPRIAAILALTAALTYMNYRGLTIVGWLAILLGVFSLLPFVV 180
Query: 181 MGLIAIPRLKPWRWCMVDLKNVNWGLYLNTLFWNLNYWDSISTLVGEVEDPGKTLPRALF 240
MG++AIP+L+P RW +VDL NVNWGLYLNTLFWNLNYWDSISTL GEVE+P +TLP+AL
Sbjct: 181 MGIVAIPKLEPSRWLVVDLGNVNWGLYLNTLFWNLNYWDSISTLAGEVENPSRTLPKALC 240
Query: 241 YALILVVFAYFFPLLIGTGAAPVHRELWSDGYFSVIAKLIGGVWLRTWIQGASAVSNMGM 300
YA+ILVV YFFPLL+GTGA P+ RE WSDGYFS IAK++GGVWLR+WIQGASA SNMGM
Sbjct: 241 YAVILVVLGYFFPLLVGTGAVPLDRERWSDGYFSDIAKVLGGVWLRSWIQGASAFSNMGM 300
Query: 301 FIAEMSSDSFQLLGMAERGMLPEIFARRSQYGTPLVGILFSASGVILLSWLSFQEIVAAE 360
F+AEMSSDSFQLLGMAE GMLPE+FA+RS+YGTP GILFSASGVILLSWLSFQEIVAAE
Sbjct: 301 FVAEMSSDSFQLLGMAEHGMLPELFAKRSRYGTPHAGILFSASGVILLSWLSFQEIVAAE 360
Query: 361 NFLYCFAMIMEFIAFVKLRMQYPEAIRPYKVPLGTVGAILLCIPPTLLILVVLALASPKV 420
NFLYCF MIMEFIAFVKLR+ PEA RPYK+P+GT GAIL+CIPPTLLILVVLALAS KV
Sbjct: 361 NFLYCFGMIMEFIAFVKLRLHNPEAPRPYKIPVGTAGAILICIPPTLLILVVLALASLKV 420
Query: 421 MAISVIAVLIGFFIQPCMTYAEKRQWFRFSMSSDL 455
MAIS+ VL+G +QPC+TYAEK++W RFS + DL
Sbjct: 421 MAISITIVLLGLVMQPCLTYAEKKRWLRFSSNVDL 455
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449453310|ref|XP_004144401.1| PREDICTED: probable polyamine transporter At1g31830-like [Cucumis sativus] gi|449524152|ref|XP_004169087.1| PREDICTED: probable polyamine transporter At1g31830-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 718 bits (1854), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 346/464 (74%), Positives = 408/464 (87%), Gaps = 1/464 (0%)
Query: 2 ESNNVHYVQLGEDSSPKL-ERFQKVSVIPLVFLIFYEVSGGPFGVEDSVMAAGPLLALIG 60
E N YV +GE SP + +KVSV+PLVFLIFYEVSGGPFGVEDSV AAGPLLAL+G
Sbjct: 3 EINRAEYVSVGESPSPPVVSNAKKVSVLPLVFLIFYEVSGGPFGVEDSVGAAGPLLALLG 62
Query: 61 FLFFPFIWSIPEALITAEMGTMFPENGGYVVWVASALGPHWGFQQGWMKWLSGVIDNALY 120
FL FP IWSIPEALITAEMGTMFPENGGYVVWV+SALGP WGFQQGWMKWLSGVIDNALY
Sbjct: 63 FLVFPLIWSIPEALITAEMGTMFPENGGYVVWVSSALGPFWGFQQGWMKWLSGVIDNALY 122
Query: 121 PVLFLDYLKSAIPALEGGFPRIVAVLLLTTALTYMNYRGLTIVGWVAIVLGVFSLVPFAL 180
PVLFLDYLKS IPAL GG PR+ AVL LT LTYMNYRGLTIVGWVA++LGVFS++PFA+
Sbjct: 123 PVLFLDYLKSEIPALGGGLPRVAAVLALTVILTYMNYRGLTIVGWVAVILGVFSILPFAV 182
Query: 181 MGLIAIPRLKPWRWCMVDLKNVNWGLYLNTLFWNLNYWDSISTLVGEVEDPGKTLPRALF 240
MGL++IP+L+P RW +V+LK+V+W LYLNTLFWNLNYWDSISTL GEVE+P KTLP+ALF
Sbjct: 183 MGLVSIPKLRPARWVVVNLKDVDWNLYLNTLFWNLNYWDSISTLAGEVENPNKTLPKALF 242
Query: 241 YALILVVFAYFFPLLIGTGAAPVHRELWSDGYFSVIAKLIGGVWLRTWIQGASAVSNMGM 300
YALILVV +YF PLL GTGA ++RELW+DGYFS +AK+IGG WL WIQGA+A+SNMGM
Sbjct: 243 YALILVVLSYFLPLLSGTGAIALNRELWTDGYFSDVAKIIGGAWLGWWIQGAAAMSNMGM 302
Query: 301 FIAEMSSDSFQLLGMAERGMLPEIFARRSQYGTPLVGILFSASGVILLSWLSFQEIVAAE 360
F+AEMSSDSFQLLGMAERGMLPE F++RS++GTPL+GILFSASGV+LLSWLSFQEIVAAE
Sbjct: 303 FVAEMSSDSFQLLGMAERGMLPEFFSKRSRHGTPLIGILFSASGVVLLSWLSFQEIVAAE 362
Query: 361 NFLYCFAMIMEFIAFVKLRMQYPEAIRPYKVPLGTVGAILLCIPPTLLILVVLALASPKV 420
NFLYCF MI+EF+AF+KLR+++P A RPYK+P+GT G+IL+CIPPT+LI +VLAL++ KV
Sbjct: 363 NFLYCFGMILEFLAFIKLRIKHPAASRPYKIPVGTAGSILMCIPPTILICIVLALSTVKV 422
Query: 421 MAISVIAVLIGFFIQPCMTYAEKRQWFRFSMSSDLPDILSASAD 464
M +S+ AV IG +QP + Y EK++W +FS+S+DLPD+ A+ D
Sbjct: 423 MIVSLAAVAIGLLLQPGLKYVEKKRWLKFSVSADLPDLHFANRD 466
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225427498|ref|XP_002263817.1| PREDICTED: uncharacterized transporter lpg1691-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 711 bits (1836), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 340/441 (77%), Positives = 398/441 (90%), Gaps = 1/441 (0%)
Query: 18 KLERFQKVSVIPLVFLIFYEVSGGPFGVEDSVMAAGPLLALIGFLFFPFIWSIPEALITA 77
+++ F+KVSV+PLVFLIFYEVSGGPFG+EDSV AAGPLLAL+GFL FPFIWSIPEALITA
Sbjct: 23 RVDNFKKVSVLPLVFLIFYEVSGGPFGIEDSVGAAGPLLALLGFLIFPFIWSIPEALITA 82
Query: 78 EMGTMFPENGGYVVWVASALGPHWGFQQGWMKWLSGVIDNALYPVLFLDYLKSAIPALEG 137
EMGTMFPENGGYVVWV+SALGP+WGFQQGWMKWLSGVIDNALYPVLFLDYL S++PAL G
Sbjct: 83 EMGTMFPENGGYVVWVSSALGPYWGFQQGWMKWLSGVIDNALYPVLFLDYLDSSVPALSG 142
Query: 138 GFPRIVAVLLLTTALTYMNYRGLTIVGWVAIVLGVFSLVPFALMGLIAIPRLKPWRWCMV 197
G PRI AVL LT LTYMNYRGLTIVGW AI+LGVFS++PF +MGL+AIP+LKP RW +V
Sbjct: 143 GLPRIAAVLALTVVLTYMNYRGLTIVGWAAILLGVFSILPFVIMGLVAIPKLKPSRWLVV 202
Query: 198 DLKNVNWGLYLNTLFWNLNYWDSISTLVGEVEDPGKTLPRALFYALILVVFAYFFPLLIG 257
+ K+V+W LYLNTLFWNLNYWDSISTL GEVE+P +TLP+ALFYALILVV YFFPLLIG
Sbjct: 203 E-KDVDWNLYLNTLFWNLNYWDSISTLAGEVENPKRTLPKALFYALILVVLGYFFPLLIG 261
Query: 258 TGAAPVHRELWSDGYFSVIAKLIGGVWLRTWIQGASAVSNMGMFIAEMSSDSFQLLGMAE 317
TGA P+ RE W+DGYFS +AK+IGGVWL WI GA+A SN+GMF+AEMSSDSFQLLGMAE
Sbjct: 262 TGAIPLDREAWTDGYFSDVAKMIGGVWLGWWITGAAAASNLGMFVAEMSSDSFQLLGMAE 321
Query: 318 RGMLPEIFARRSQYGTPLVGILFSASGVILLSWLSFQEIVAAENFLYCFAMIMEFIAFVK 377
RGMLP IFA+RS YGTPL+GILFSASGV+LLSW+SFQEI+AAENFLYCF MI+EFIAFV+
Sbjct: 322 RGMLPSIFAKRSHYGTPLIGILFSASGVLLLSWMSFQEIIAAENFLYCFGMILEFIAFVR 381
Query: 378 LRMQYPEAIRPYKVPLGTVGAILLCIPPTLLILVVLALASPKVMAISVIAVLIGFFIQPC 437
LR++YP A RPYK+PLGTVG+IL+C+PPT+LI +VLAL+S KV +S+IAV+IG +QPC
Sbjct: 382 LRIKYPAASRPYKIPLGTVGSILMCVPPTILICIVLALSSLKVAVVSLIAVIIGLVLQPC 441
Query: 438 MTYAEKRQWFRFSMSSDLPDI 458
+ E+++W +FS+SSDLPD+
Sbjct: 442 LKCIERKRWLKFSVSSDLPDL 462
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224074521|ref|XP_002304384.1| neutral amino acid transport protein [Populus trichocarpa] gi|222841816|gb|EEE79363.1| neutral amino acid transport protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 705 bits (1819), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 344/464 (74%), Positives = 410/464 (88%), Gaps = 1/464 (0%)
Query: 2 ESNNVHYVQLGED-SSPKLERFQKVSVIPLVFLIFYEVSGGPFGVEDSVMAAGPLLALIG 60
E N V YV + E SSPKL+ F+KVSV+ L+FLIFYEVSGGPFGVEDSV AAGPLL+L+G
Sbjct: 3 EYNGVAYVDINEGPSSPKLDNFKKVSVLHLIFLIFYEVSGGPFGVEDSVQAAGPLLSLLG 62
Query: 61 FLFFPFIWSIPEALITAEMGTMFPENGGYVVWVASALGPHWGFQQGWMKWLSGVIDNALY 120
FL FP IWS+PEALITAEMGTMFPENGGYVVWV++ALGP+WGFQQGWMKWLSGVIDNALY
Sbjct: 63 FLVFPLIWSVPEALITAEMGTMFPENGGYVVWVSTALGPYWGFQQGWMKWLSGVIDNALY 122
Query: 121 PVLFLDYLKSAIPALEGGFPRIVAVLLLTTALTYMNYRGLTIVGWVAIVLGVFSLVPFAL 180
PVLFLDYLKS IPAL GG PR+ A L LT LTYMNYRGL IVG VA++LG+FS++PF +
Sbjct: 123 PVLFLDYLKSGIPALAGGLPRVAAALALTFLLTYMNYRGLAIVGSVAVLLGIFSILPFVV 182
Query: 181 MGLIAIPRLKPWRWCMVDLKNVNWGLYLNTLFWNLNYWDSISTLVGEVEDPGKTLPRALF 240
MGL+AIP+L+P RW +++L +V+W LYLNTLFWNLNYWDSISTL GEV++P K LP+ALF
Sbjct: 183 MGLVAIPKLEPSRWFVMNLHDVDWNLYLNTLFWNLNYWDSISTLAGEVDNPKKNLPKALF 242
Query: 241 YALILVVFAYFFPLLIGTGAAPVHRELWSDGYFSVIAKLIGGVWLRTWIQGASAVSNMGM 300
YALILVV +YFFPLL+GTGA P++R+LW+DGYFS IAK++GGVWLR WIQGA+A+SNMGM
Sbjct: 243 YALILVVLSYFFPLLVGTGAIPLNRDLWTDGYFSDIAKILGGVWLRWWIQGAAAMSNMGM 302
Query: 301 FIAEMSSDSFQLLGMAERGMLPEIFARRSQYGTPLVGILFSASGVILLSWLSFQEIVAAE 360
F+AEMSSDSFQLLGMAERGMLPE FA+RS++GTPL+GILFSASGVILLSWLSFQEI+AAE
Sbjct: 303 FVAEMSSDSFQLLGMAERGMLPEFFAKRSRHGTPLIGILFSASGVILLSWLSFQEIIAAE 362
Query: 361 NFLYCFAMIMEFIAFVKLRMQYPEAIRPYKVPLGTVGAILLCIPPTLLILVVLALASPKV 420
NFLYCF MI+EFIAFV LR++ P A RPYK+P+GTVGAIL+CIPPT+LI VVLAL++ KV
Sbjct: 363 NFLYCFGMILEFIAFVLLRIKCPVASRPYKIPVGTVGAILMCIPPTILICVVLALSTVKV 422
Query: 421 MAISVIAVLIGFFIQPCMTYAEKRQWFRFSMSSDLPDILSASAD 464
M +S+ AV IG +QPC+ YAEK++W +FS+S +LPD+ + +
Sbjct: 423 MIVSLFAVAIGLVMQPCLKYAEKKRWMKFSVSGELPDLHEGNQE 466
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297744564|emb|CBI37826.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 704 bits (1817), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 355/461 (77%), Positives = 400/461 (86%), Gaps = 21/461 (4%)
Query: 1 MESNNVHYVQLGEDSSPKLERFQKVSVIPLVFLIFYEVSGGPFGVEDSVMAAGPLLALIG 60
++ N YV L +D+SPK + F+KVS+IPLVFLIFYEVSGGPFGVED+V AAGPLLAL+G
Sbjct: 55 VQMRNAEYVGLEDDASPKYDNFKKVSIIPLVFLIFYEVSGGPFGVEDTVQAAGPLLALLG 114
Query: 61 FLFFPFIWSIPEALITAEMGTMFPENGGYVVWVASALGPHWGFQQGWMKWLSGVIDNALY 120
FL FP IWSIPEALITAEMGTMFPENGGYVVWV+SALGP+WGFQQGWMKWLSGVIDNALY
Sbjct: 115 FLLFPVIWSIPEALITAEMGTMFPENGGYVVWVSSALGPYWGFQQGWMKWLSGVIDNALY 174
Query: 121 PVLFLDYLKSAIPALEGGFPRIVAVLLLTTALTYMNYRGLTIVGWVAIVLGVFSLVPFAL 180
PVLFLDYLKSAIP LEGG PRI+AVL LT ALTYMNYRGLTIVGWVA++LGVFS++PF +
Sbjct: 175 PVLFLDYLKSAIPGLEGGLPRIIAVLALTLALTYMNYRGLTIVGWVAVLLGVFSILPFVV 234
Query: 181 MGLIAIPRLKPWRWCMVDLKNVNWGLYLNTLFWNLNYWDSISTLVGEVEDPGKTLPRALF 240
MGL+AIP L+P RW ++DL NVNWGLYLNTLFWNLNYWDSISTL GEVE+P KTLP+ALF
Sbjct: 235 MGLVAIPELEPSRWFVIDLHNVNWGLYLNTLFWNLNYWDSISTLAGEVENPNKTLPKALF 294
Query: 241 YALILVVFAYFFPLLIGTGAAPVHRELWSDGYFSVIAKLIGGVWLRTWIQGASAVSNMGM 300
YALIL +W DGYF+ IAK++GG+WLR+WIQGASA+SNMGM
Sbjct: 295 YALIL---------------------MWVDGYFADIAKILGGIWLRSWIQGASALSNMGM 333
Query: 301 FIAEMSSDSFQLLGMAERGMLPEIFARRSQYGTPLVGILFSASGVILLSWLSFQEIVAAE 360
F+AEMSSDSFQLLGMAERGMLP+ FA+RS+YGTPL GILFSASGVILLSWLSFQEIVAAE
Sbjct: 334 FVAEMSSDSFQLLGMAERGMLPDFFAKRSRYGTPLTGILFSASGVILLSWLSFQEIVAAE 393
Query: 361 NFLYCFAMIMEFIAFVKLRMQYPEAIRPYKVPLGTVGAILLCIPPTLLILVVLALASPKV 420
NFLYCF MIMEFIAFVKLRM+YP A RPY +P+GT GAIL+CIPPTLLI VVLALAS KV
Sbjct: 394 NFLYCFGMIMEFIAFVKLRMRYPAASRPYMIPVGTTGAILMCIPPTLLICVVLALASFKV 453
Query: 421 MAISVIAVLIGFFIQPCMTYAEKRQWFRFSMSSDLPDILSA 461
M IS++AV+IG +QPC+ YAEK++W RFSMSSDLPD SA
Sbjct: 454 MVISLLAVMIGLVMQPCLLYAEKKRWLRFSMSSDLPDFHSA 494
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297851622|ref|XP_002893692.1| amino acid permease family protein [Arabidopsis lyrata subsp. lyrata] gi|297339534|gb|EFH69951.1| amino acid permease family protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 702 bits (1811), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 331/471 (70%), Positives = 405/471 (85%), Gaps = 4/471 (0%)
Query: 2 ESNNVHYVQLGED---SSPK-LERFQKVSVIPLVFLIFYEVSGGPFGVEDSVMAAGPLLA 57
+N+V Y +G+D SSPK ++ +KVS++PLVFLIFYEVSGGPFGVEDSV AAGPLLA
Sbjct: 21 SNNDVPYSSVGDDEVPSSPKATDKIRKVSMLPLVFLIFYEVSGGPFGVEDSVNAAGPLLA 80
Query: 58 LIGFLFFPFIWSIPEALITAEMGTMFPENGGYVVWVASALGPHWGFQQGWMKWLSGVIDN 117
L+GF+ FPFIWSIPEALITAEMGTMFPENGGYVVWV+SALGP WGFQQGWMKWLSGVIDN
Sbjct: 81 LLGFVIFPFIWSIPEALITAEMGTMFPENGGYVVWVSSALGPFWGFQQGWMKWLSGVIDN 140
Query: 118 ALYPVLFLDYLKSAIPALEGGFPRIVAVLLLTTALTYMNYRGLTIVGWVAIVLGVFSLVP 177
ALYPVLFLDYLKS IPAL G PR+ A+L+LT LTY+NYRGLTIVGWVA+++GVFS++P
Sbjct: 141 ALYPVLFLDYLKSGIPALGSGLPRVAAILVLTILLTYLNYRGLTIVGWVAVLMGVFSILP 200
Query: 178 FALMGLIAIPRLKPWRWCMVDLKNVNWGLYLNTLFWNLNYWDSISTLVGEVEDPGKTLPR 237
FA+MGLI+IP+L+P RW ++DL NVNW LYLNTLFWNLNYWDSISTL GEVE+P TLP+
Sbjct: 201 FAVMGLISIPQLEPSRWLVMDLGNVNWNLYLNTLFWNLNYWDSISTLAGEVENPNHTLPK 260
Query: 238 ALFYALILVVFAYFFPLLIGTGAAPVHRELWSDGYFSVIAKLIGGVWLRTWIQGASAVSN 297
AL+Y +ILV +Y FPLL G GA P+ RE W+DGYFS +AK +GG WLR W+Q A+A SN
Sbjct: 261 ALYYGVILVACSYIFPLLAGIGAIPLEREKWTDGYFSDVAKALGGAWLRWWVQAAAATSN 320
Query: 298 MGMFIAEMSSDSFQLLGMAERGMLPEIFARRSQYGTPLVGILFSASGVILLSWLSFQEIV 357
MGMF+AEMSSDSFQLLGMAERGMLPE FA+RS+YGTPL+GILFSASGV+LLSWLSFQEIV
Sbjct: 321 MGMFLAEMSSDSFQLLGMAERGMLPEFFAKRSRYGTPLLGILFSASGVVLLSWLSFQEIV 380
Query: 358 AAENFLYCFAMIMEFIAFVKLRMQYPEAIRPYKVPLGTVGAILLCIPPTLLILVVLALAS 417
AAEN LYC MI+EFIAFV++RM++P A RPYK+P+GT G+IL+C+PPT+LI V+AL+S
Sbjct: 381 AAENLLYCVGMILEFIAFVRMRMKHPAASRPYKIPIGTTGSILMCVPPTILIFAVVALSS 440
Query: 418 PKVMAISVIAVLIGFFIQPCMTYAEKRQWFRFSMSSDLPDILSASADPQHN 468
KV A+S++ ++IGF + PC+ + ++++W +FS+SSDLPD+ + + +
Sbjct: 441 LKVAAVSIVMMIIGFVMHPCLNHMDRKRWLKFSISSDLPDLQQETREYEET 491
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 470 | ||||||
| TAIR|locus:2034451 | 495 | PUT2 "POLYAMINE UPTAKE TRANSPO | 0.972 | 0.923 | 0.679 | 9.6e-176 | |
| UNIPROTKB|Q6Z8D0 | 531 | PUT1 "Polyamine transporter PU | 0.951 | 0.841 | 0.668 | 6e-167 | |
| TAIR|locus:2166354 | 490 | RMV1 "resistant to methyl viol | 0.938 | 0.9 | 0.659 | 8.7e-166 | |
| TAIR|locus:2034461 | 482 | PUT1 "POLYAMINE UPTAKE TRANSPO | 0.965 | 0.941 | 0.632 | 1.8e-158 | |
| TAIR|locus:2101520 | 479 | PUT5 "POLYAMINE UPTAKE TRANSPO | 0.974 | 0.956 | 0.546 | 3.6e-137 | |
| TAIR|locus:2086794 | 478 | PUT4 "POLYAMINE UPTAKE TRANSPO | 0.817 | 0.803 | 0.496 | 1.4e-101 | |
| DICTYBASE|DDB_G0267504 | 488 | DDB_G0267504 "putative amino a | 0.691 | 0.665 | 0.278 | 6.9e-31 | |
| TIGR_CMR|CBU_2020 | 476 | CBU_2020 "amino acid antiporte | 0.710 | 0.701 | 0.247 | 2.2e-14 | |
| RGD|1311633 | 479 | Slc7a13 "solute carrier family | 0.872 | 0.855 | 0.226 | 6.3e-14 | |
| TIGR_CMR|BA_3213 | 428 | BA_3213 "amino acid permease f | 0.689 | 0.757 | 0.232 | 6.3e-13 |
| TAIR|locus:2034451 PUT2 "POLYAMINE UPTAKE TRANSPORTER 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1707 (606.0 bits), Expect = 9.6e-176, P = 9.6e-176
Identities = 314/462 (67%), Positives = 374/462 (80%)
Query: 2 ESNNVHYVQLGED----SSPKL-ERFQKVSVIPLVFLIFYEVSGGPFGVEDSVMAAGPLL 56
E+N V Y +G D S PK ++ +KVS++PLVFLIFYEVSGGPFGVEDSV AAGPLL
Sbjct: 21 ENNEVPYSSVGADEVPSSPPKATDKIRKVSMLPLVFLIFYEVSGGPFGVEDSVNAAGPLL 80
Query: 57 ALIGFLFFPFIWSIPEALITAEMGTMFPENGGYVVWVASALGPHWGFQQGWMKWLSGVID 116
AL+GF+ FPFIWSIPEALITAEMGTM+PENGGYVVWV+SALGP WGFQQGWMKWLSGVID
Sbjct: 81 ALLGFVIFPFIWSIPEALITAEMGTMYPENGGYVVWVSSALGPFWGFQQGWMKWLSGVID 140
Query: 117 NALYPVLFLDYLKSAIPALEGGFPRIXXXXXXXXXXXYMNYRGLTIVGWVAIVLGVFSLV 176
NALYPVLFLDYLKS +PAL G PR+ Y+NYRGLTIVGWVA+++GVFS++
Sbjct: 141 NALYPVLFLDYLKSGVPALGSGLPRVASILVLTILLTYLNYRGLTIVGWVAVLMGVFSIL 200
Query: 177 PFALMGLIAIPRLKPWRWCMVDLKNVNWGLYLNTLFWNLNYWDSISTLVGEVEDPGKTLP 236
PFA+MGLI+IP+L+P RW ++DL NVNW LYLNTLFWNLNYWDSISTL GEVE+P TLP
Sbjct: 201 PFAVMGLISIPQLEPSRWLVMDLGNVNWNLYLNTLFWNLNYWDSISTLAGEVENPNHTLP 260
Query: 237 RALFYALILVVFAYFFPLLIGTGAAPVHRELWSDGYFSVIAKLIGGVWLRTWIQGASAVS 296
+ALFY +ILV +Y FPLL G GA P+ RE W+DGYFS +AK +GG WLR W+Q A+A S
Sbjct: 261 KALFYGVILVACSYIFPLLAGIGAIPLEREKWTDGYFSDVAKALGGAWLRWWVQAAAATS 320
Query: 297 NMGMFIAEMSSDSFQLLGMAERGMLPEIFARRSQYGTPLVGILFSASGVILLSWLSFQEI 356
NMGMFIAEMSSDSFQLLGMAERGMLPE FA+RS+YGTPL+GILFSASGV+LLSWLSFQEI
Sbjct: 321 NMGMFIAEMSSDSFQLLGMAERGMLPEFFAKRSRYGTPLLGILFSASGVVLLSWLSFQEI 380
Query: 357 VAAENFLYCFAMIMEFIAFVKLRMQYPEAIRPYKVPLGTVGXXXXXXXXXXXXXXXXXXX 416
VAAEN LYC MI+EFIAFV++RM++P A RPYK+P+GT G
Sbjct: 381 VAAENLLYCVGMILEFIAFVRMRMKHPAASRPYKIPIGTTGSILMCIPPTILICAVVALS 440
Query: 417 SPKVMAISVIAVLIGFFIQPCMTYAEKRQWFRFSMSSDLPDI 458
S KV A+S++ ++IGF I P + + ++++W +FS+SSDLPD+
Sbjct: 441 SLKVAAVSIVMMIIGFLIHPLLNHMDRKRWVKFSISSDLPDL 482
|
|
| UNIPROTKB|Q6Z8D0 PUT1 "Polyamine transporter PUT1" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 1624 (576.7 bits), Expect = 6.0e-167, P = 6.0e-167
Identities = 299/447 (66%), Positives = 355/447 (79%)
Query: 12 GEDSSPKLERFQKVSVIPLVFLIFYEVSGGPFGVEDSVMAAGPLLALIGFLFFPFIWSIP 71
G+ P + VS+IPL+FLIFYEVSGGPFG+EDSV AAGPLLA+IGFL P IWSIP
Sbjct: 70 GDAGGPMPSSARTVSMIPLIFLIFYEVSGGPFGIEDSVGAAGPLLAIIGFLVLPVIWSIP 129
Query: 72 EALITAEMGTMFPENGGYVVWVASALGPHWGFQQGWMKWLSGVIDNALYPVLFLDYLKSA 131
EALITAE+G MFPENGGYVVWVASALGP+WGFQQGWMKWLSGVIDNALYPVLFLDYLKS
Sbjct: 130 EALITAELGAMFPENGGYVVWVASALGPYWGFQQGWMKWLSGVIDNALYPVLFLDYLKSG 189
Query: 132 IPALEGGFPRIXXXXXXXXXXXYMNYRGLTIVGWVAIVLGVFSLVPFALMGLIAIPRLKP 191
+PAL GG PR +NYRGLT+VGWVAI LGVFSL+PF +MGLIA+P+L+P
Sbjct: 190 VPALGGGAPRAFAVVGLTAVLTLLNYRGLTVVGWVAICLGVFSLLPFFVMGLIALPKLRP 249
Query: 192 WRWCMVDLKNVNWGLYLNTLFWNLNYWDSISTLVGEVEDPGKTLPRALFYALILVVFAYF 251
RW ++DL NV+W LYLNTLFWNLNYWDSISTL GEV++PGKTLP+ALFYA+I VV AY
Sbjct: 250 ARWLVIDLHNVDWNLYLNTLFWNLNYWDSISTLAGEVKNPGKTLPKALFYAVIFVVVAYL 309
Query: 252 FPLLIGTGAAPVHRELWSDGYFSVIAKLIGGVWLRTWIQGASAVSNMGMFIAEMSSDSFQ 311
+PLL GTGA P+ R W+DGYF+ IAKL+GG WL W+Q A+A+SNMGMF+AEMSSDS+Q
Sbjct: 310 YPLLAGTGAVPLDRGQWTDGYFADIAKLLGGAWLMWWVQSAAALSNMGMFVAEMSSDSYQ 369
Query: 312 LLGMAERGMLPEIFARRSQYGTPLVGILFSASGVILLSWLSFQEIVAAENFLYCFAMIME 371
LLGMAERGMLP FA RS+YGTPL GILFSASGV+LLS +SFQEIVAAENFLYCF M++E
Sbjct: 370 LLGMAERGMLPSFFAARSRYGTPLAGILFSASGVLLLSMMSFQEIVAAENFLYCFGMLLE 429
Query: 372 FIAFVKLRMQYPEAIRPYKVPLGTVGXXXXXXXXXXXXXXXXXXXSPKVMAISVIAVLIG 431
F+AF+ R++ P+A RPY+VPLGT G + KV +S+ AV +G
Sbjct: 430 FVAFILHRVRRPDAARPYRVPLGTAGCVAMLVPPTALIAVVLALSTLKVAVVSLGAVAMG 489
Query: 432 FFIQPCMTYAEKRQWFRFSMSSDLPDI 458
+QP + + EK++W RFS++ DLP+I
Sbjct: 490 LVLQPALRFVEKKRWLRFSVNPDLPEI 516
|
|
| TAIR|locus:2166354 RMV1 "resistant to methyl viologen 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1613 (572.9 bits), Expect = 8.7e-166, P = 8.7e-166
Identities = 292/443 (65%), Positives = 356/443 (80%)
Query: 19 LERFQKVSVIPLVFLIFYEVSGGPFGVEDSVMAAGPLLALIGFLFFPFIWSIPEALITAE 78
+ + +K++V+PLVFLIFYEVSGGPFG+EDSV AAGPLLA++GF+ FPFIWSIPEALITAE
Sbjct: 47 VNQIKKITVLPLVFLIFYEVSGGPFGIEDSVKAAGPLLAIVGFIVFPFIWSIPEALITAE 106
Query: 79 MGTMFPENGGYVVWVASALGPHWGFQQGWMKWLSGVIDNALYPVLFLDYLKSAIPALEGG 138
MGTMFPENGGYVVWV A+GP+WGFQQGW+KWLSGVIDNALYP+LFLDYLKS IP L G
Sbjct: 107 MGTMFPENGGYVVWVTLAMGPYWGFQQGWVKWLSGVIDNALYPILFLDYLKSGIPILGSG 166
Query: 139 FPRIXXXXXXXXXXXYMNYRGLTIVGWVAIVLGVFSLVPFALMGLIAIPRLKPWRWCMVD 198
PR+ Y+NYRGL+IVG A++LGVFS++PF +M ++IP+LKP RW +V
Sbjct: 167 IPRVAAILVLTVALTYLNYRGLSIVGVAAVLLGVFSILPFVVMSFMSIPKLKPSRWLVVS 226
Query: 199 --LKNVNWGLYLNTLFWNLNYWDSISTLVGEVEDPGKTLPRALFYALILVVFAYFFPLLI 256
+K VNW LYLNTLFWNLNYWDS+STL GEVE+P KTLPRALFYAL+LVVF+Y FP+L
Sbjct: 227 KKMKGVNWSLYLNTLFWNLNYWDSVSTLTGEVENPSKTLPRALFYALLLVVFSYIFPVLT 286
Query: 257 GTGAAPVHRELWSDGYFSVIAKLIGGVWLRTWIQGASAVSNMGMFIAEMSSDSFQLLGMA 316
GTGA + ++LW+DGYF+ I K+IGGVWL WIQ A+A SNMGMF+AEMSSDSFQLLGMA
Sbjct: 287 GTGAIALDQKLWTDGYFADIGKVIGGVWLGWWIQAAAATSNMGMFLAEMSSDSFQLLGMA 346
Query: 317 ERGMLPEIFARRSQYGTPLVGILFSASGVILLSWLSFQEIVAAENFLYCFAMIMEFIAFV 376
ERGMLPE+FA+RS+Y TP VGILFSASGVI+LSWLSFQEIVAAEN LYCF M++EFI FV
Sbjct: 347 ERGMLPEVFAKRSRYRTPWVGILFSASGVIILSWLSFQEIVAAENLLYCFGMVLEFITFV 406
Query: 377 KLRMQYPEAIRPYKVPLGTVGXXXXXXXXXXXXXXXXXXXSPKVMAISVIAVLIGFFIQP 436
+LRM+YP A RP+K+P+G +G + KV +S+ A++IG +QP
Sbjct: 407 RLRMKYPAASRPFKIPVGVLGSVLMCIPPTVLIGVIMAFTNLKVALVSLAAIVIGLVLQP 466
Query: 437 CMTYAEKRQWFRFSMSSDLPDIL 459
C+ EK+ W +FS SS LP+++
Sbjct: 467 CLKQVEKKGWLKFSTSSHLPNLM 489
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| TAIR|locus:2034461 PUT1 "POLYAMINE UPTAKE TRANSPORTER 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1544 (548.6 bits), Expect = 1.8e-158, P = 1.8e-158
Identities = 287/454 (63%), Positives = 348/454 (76%)
Query: 11 LGEDSSPKLERFQKVSVIPLVFLIFYEVSGGPFGVEDSVMAAGPLLALIGFLFFPFIWSI 70
+G S QKVS++PLVFLIFYEVSGGPFG E SV AAGPLLAL+GF+ FPFIW I
Sbjct: 22 VGGSSKEGNNSIQKVSMLPLVFLIFYEVSGGPFGAEGSVNAAGPLLALLGFVIFPFIWCI 81
Query: 71 PEALITAEMGTMFPENGGYVVWVASALGPHWGFQQGWMKWLSGVIDNALYPVLFLDYLKS 130
PEALITAEM TMFP NGG+VVWV+SALG WGFQ GWMKWL GVIDNALYPVLFLDYLKS
Sbjct: 82 PEALITAEMSTMFPINGGFVVWVSSALGTFWGFQVGWMKWLCGVIDNALYPVLFLDYLKS 141
Query: 131 AIPALEGGFPRIXXXXXXXXXXXYMNYRGLTIVGWVAIVLGVFSLVPFALMGLIAIPRLK 190
A+PAL G PR+ Y+NYRGLTIVGW A+ +GVFS++PFA+M L++IP+L+
Sbjct: 142 AVPALATGLPRVASILILTLLLTYLNYRGLTIVGWTAVFMGVFSMLPFAVMSLVSIPQLE 201
Query: 191 PWRWCMVDLKNVNWGLYLNTLFWNLNYWDSISTLVGEVEDPGKTLPRALFYALILVVFAY 250
P RW ++DL NVNW LYLNTL WNLNYWDS+STL GEV +P KTLP+AL Y +I V +
Sbjct: 202 PSRWLVMDLGNVNWNLYLNTLLWNLNYWDSVSTLAGEVANPKKTLPKALCYGVIFVALSN 261
Query: 251 FFPLLIGTGAAPVHRELWSDGYFSVIAKLIGGVWLRTWIQGASAVSNMGMFIAEMSSDSF 310
F PLL GTGA P+ RELW+DGY + +AK IGG WL+ W+Q A+A SNMGMF+AEMSSDSF
Sbjct: 262 FLPLLSGTGAIPLDRELWTDGYLAEVAKAIGGGWLQLWVQAAAATSNMGMFLAEMSSDSF 321
Query: 311 QLLGMAERGMLPEIFARRSQYGTPLVGILFSASGVILLSWLSFQEIVAAENFLYCFAMIM 370
QLLGMAE G+LPEIFA+RS+YGTPL+GILFSASGV+LLS LSFQEI+AAEN LYC MI+
Sbjct: 322 QLLGMAELGILPEIFAQRSRYGTPLLGILFSASGVLLLSGLSFQEIIAAENLLYCGGMIL 381
Query: 371 EFIAFVKLRMQYPEAIRPYKVPLGTVGXXXXXXXXXXXXXXXXXXXSPKVMAISVIAVLI 430
EFIAFV+LR ++P A RPYK+P+GTVG + KV +S + V+I
Sbjct: 382 EFIAFVRLRKKHPAASRPYKIPVGTVGSILICVPPIVLICLVIVLSTIKVALVSFVMVVI 441
Query: 431 GFFIQPCMTYAEKRQWFRFSMSSDLPDILSASAD 464
GF ++PC+ + + ++W +FS+ SDL + + D
Sbjct: 442 GFLMKPCLNHMDGKKWVKFSVCSDLAEFQKENLD 475
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| TAIR|locus:2101520 PUT5 "POLYAMINE UPTAKE TRANSPORTER 5" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1343 (477.8 bits), Expect = 3.6e-137, P = 3.6e-137
Identities = 252/461 (54%), Positives = 326/461 (70%)
Query: 11 LGEDSSPKLERFQKVSVIPLVFLIFYEVSGGPFGVEDSVMAAG-PLLALIGFLFFPFIWS 69
+ +++S K + K++++PLVFLIFYEVSGGPFGVEDSV + G PLLAL+GFL FP IWS
Sbjct: 8 VNDENSSKPKPSPKLTLLPLVFLIFYEVSGGPFGVEDSVKSGGGPLLALLGFLIFPLIWS 67
Query: 70 IPEALITAEMGTMFPENGGYVVWVASALGPHWGFQQGWMKWLSGVIDNALYPVLFLDYLK 129
IPEAL+TAE+ T FPENGGYVVW++SA GP WGFQ+G+ KW SGV+DNALYPVLFLDYLK
Sbjct: 68 IPEALVTAELATSFPENGGYVVWISSAFGPFWGFQEGFWKWFSGVMDNALYPVLFLDYLK 127
Query: 130 SAIPALEGGFPRIXXXXXXXXXXXYMNYRGLTIVGWVAIVLGVFSLVPFALMGLIAIPRL 189
+ P L+ R+ Y+NYRGL IVG+ A+VL VFSL PF +M L+A+P +
Sbjct: 128 HSFPVLDHVAARVPALLVITFSLTYLNYRGLHIVGFSAVVLAVFSLCPFVVMALLAVPNI 187
Query: 190 KPWRWCMVDLKNVNWGLYLNTLFWNLNYWDSISTLVGEVEDPGKTLPRALFYALILVVFA 249
+P RW VD + +NW Y NT+FWNLNYWD STL GEV+ PGKT P+ALF A++LV+ +
Sbjct: 188 RPKRWLFVDTQKINWRGYFNTMFWNLNYWDKASTLAGEVDRPGKTFPKALFGAVLLVMGS 247
Query: 250 YFFPLLIGTGAAPVHRE-LWSDGYFSVIAKLIGGVWLRTWIQGASAVSNMGMFIAEMSSD 308
Y PL+ GTGA WSDGYF+ + LIGGVWL+ WIQ A+A+SN+G+F AEMSSD
Sbjct: 248 YLIPLMAGTGALSSSTSGEWSDGYFAEVGMLIGGVWLKGWIQAAAAMSNLGLFEAEMSSD 307
Query: 309 SFQLLGMAERGMLPEIFARRSQYGTPLVGILFSASGVILLSWLSFQEIVAAENFLYCFAM 368
+FQLLGM+E GMLP FA+RS+YGTP + IL SA+GVI LSW+SFQEI+ NFLY M
Sbjct: 308 AFQLLGMSEIGMLPAFFAQRSKYGTPTISILCSATGVIFLSWMSFQEIIEFLNFLYALGM 367
Query: 369 IMEFIAFVKLRMQYPEAIRPYKVPLGTVGXXXXXXXXXXXXXXXXXXXSPKVMAISVIAV 428
++EF AFVKLR++ P+ RPY+VPL T G +PK IS + +
Sbjct: 368 LLEFAAFVKLRIKKPDLHRPYRVPLNTFGVSMLCLPPSLLVILVMVLAAPKTFLISGVII 427
Query: 429 LIGFFIQPCMTYAEKRQWFRFSMSSDLPDILSASADPQHNE 469
++GF + P +T +++QW RF P + S++ Q +E
Sbjct: 428 VLGFCLYPFLTLVKEKQWARFIPEETRP-VSGVSSESQLDE 467
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| TAIR|locus:2086794 PUT4 "POLYAMINE UPTAKE TRANSPORTER 4" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1007 (359.5 bits), Expect = 1.4e-101, P = 1.4e-101
Identities = 191/385 (49%), Positives = 262/385 (68%)
Query: 14 DSSPKLERFQKVSVIPLVFLIFYEVSGGPFGVEDSVMAAGPLLALIGFLFFPFIWSIPEA 73
+SS K +K+++IPLVFLI++EV+GGPFG E +V AAGPLLA++GFL FPFIWSIPEA
Sbjct: 19 ESSGKKATAKKLTLIPLVFLIYFEVAGGPFGEEPAVQAAGPLLAILGFLIFPFIWSIPEA 78
Query: 74 LITAEMGTMFPENGGYVVWVASALGPHWGFQQGWMKWLSGVIDNALYPVLFLDYLKSAIP 133
LITAE+ T FP NGG+V+W A G G G +K+LSGVI+ A +PVL + YL P
Sbjct: 79 LITAELSTAFPGNGGFVIWAHRAFGSFVGSMMGSLKFLSGVINVASFPVLCVTYLDKLFP 138
Query: 134 ALEGGFPRIXXXXXXXXXXXYMNYRGLTIVGWVAIVLGVFSLVPFALMGLIAIPRLKPWR 193
LE G+PR ++NY GL IVG+ A+VLG+ SL PF +M +AIP++KP R
Sbjct: 139 VLESGWPRNVCIFASTVVLSFLNYTGLAIVGYAAVVLGLVSLSPFLVMSAMAIPKIKPHR 198
Query: 194 WCMVDLKNVNWGLYLNTLFWNLNYWDSISTLVGEVEDPGKTLPRALFYALILVVFAYFFP 253
W + K +W LY NTLFWNLN+WD++STL GEV++P KT P AL A+I AY P
Sbjct: 199 WGSLGTKKKDWNLYFNTLFWNLNFWDNVSTLAGEVDEPQKTFPLALLIAVIFTCVAYLIP 258
Query: 254 LLIGTGAAPVHRELWSDGYFSVIAKLIGGVWLRTWIQGASAVSNMGMFIAEMSSDSFQLL 313
L TGA V + W +G+ + A++I G WL+ WI+ + +S++G+F A++SS ++QL
Sbjct: 259 LFAVTGAVSVDQSRWENGFHAEAAEMIAGKWLKIWIEIGAVLSSIGLFEAQLSSSAYQLE 318
Query: 314 GMAERGMLPEIFARRSQ-YGTPLVGILFSASGVILLSWLSFQEIVAAENFLYCFAMIMEF 372
GMAE G LP+ F RS+ + TP VGIL SA + LS+++F +I+++ NFLY M +EF
Sbjct: 319 GMAELGFLPKFFGVRSKWFNTPWVGILISALMSLGLSYMNFTDIISSANFLYTLGMFLEF 378
Query: 373 IAFVKLRMQYPEAIRPYKVPLGTVG 397
+F+ LR + P+ RPY+VPL G
Sbjct: 379 ASFIWLRRKLPQLKRPYRVPLKIPG 403
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| DICTYBASE|DDB_G0267504 DDB_G0267504 "putative amino acid permease" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 340 (124.7 bits), Expect = 6.9e-31, P = 6.9e-31
Identities = 96/345 (27%), Positives = 153/345 (44%)
Query: 1 MESNNVHYVQLGEDSSPKLERFQKVSVIPLVFLIFYEVSGGPFGVEDSVMAAGPLLALIG 60
+E N H +GE + + I + + ++ VSGGPFG+E SV A L+
Sbjct: 3 VEIENEHSKLVGESEPQSNHPPRTIGFISFLSIGYFLVSGGPFGIEGSVSAGSYAYVLLT 62
Query: 61 FLFFPFIWSIPEALITAEMGTMFPENGGYVVWVASALGPHWGFQQGWMKWLSGVIDNALY 120
++ P W IP LITAE+ M ++GG VW A G + G W + ++D +LY
Sbjct: 63 YIVLPIFWCIPHGLITAELSLMVNKDGGCSVWGEKAFGEYVSLSLGLFSWFAAIVDLSLY 122
Query: 121 PVLFLDYLKSAIPALE-------GGFP-----RIXXXXXXXXXXXYMNYRGLTIVGWVAI 168
PVLF+ Y + GG R+ MN G VG +
Sbjct: 123 PVLFVQYFSNCFNGTPYENDLWGGGMETCTHCRLLIAFAVIILIVLMNCWGAEQVGIFST 182
Query: 169 VLGVFSLVPFALMGLIAIPRLKPWRWCMVD--LKNVNWGLYLNTLFWNLNYWDSISTLVG 226
+L V L PF +M ++ I ++ VD L N G+ L NL + S G
Sbjct: 183 ILSVILLTPFIIMVVMGIGHVELGEILRVDGGLSNFK-GVQWGVLLTNLVWSTSGFDATG 241
Query: 227 EVEDPGKTLPRALFYALI--LVVFAYFFPLLIGTGAAPVHREL--WSDGYFSVIAKLIGG 282
++ K R +I +++ + L + G R+ W DG FS+IA +GG
Sbjct: 242 QLAGEVKNPKRNYPIGIIGVMIITITSYVLPLLVGMQ-YDRDYANWQDGQFSIIALKVGG 300
Query: 283 VWLRTWIQGASAVSNMGMFIAEMSSDSFQLLGMAERGMLPEIFAR 327
WL + VS++G+F + + + L +++RG LP++F++
Sbjct: 301 QWLGILLSIGGMVSSVGLFQCNLCTSARNLYSLSDRGYLPKVFSK 345
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| TIGR_CMR|CBU_2020 CBU_2020 "amino acid antiporter" [Coxiella burnetii RSA 493 (taxid:227377)] | Back alignment and assigned GO terms |
|---|
Score = 212 (79.7 bits), Expect = 2.2e-14, P = 2.2e-14
Identities = 93/376 (24%), Positives = 159/376 (42%)
Query: 55 LLALIGFLFFPFIWSIPEALITAEMGTMFPENGGYVVWVASALGPHWGFQQGWMKWLSGV 114
L L+ +L I+ +P L+TAE+ T P+ GG VWV A GP WGF W++W+ V
Sbjct: 43 LTILLFYLIAAAIFLVPSVLVTAELATHRPKTGGVYVWVREAFGPQWGFFTIWLQWIYNV 102
Query: 115 I--DNAL-YPVLFLDYLKSAIPALEGGFPRIXXXXXXXXXXXYMNYRGLTIVGWVAIVLG 171
L + + + Y + A + F + N G+TI V+ +
Sbjct: 103 FWYPTILSFIAVNIAYFFNPALAADKAF-MLPMILGMFVLATIANSYGMTISSVVSSISA 161
Query: 172 VF-SLVPFALMGLIAIPRLKPWRWCMVDLK-NVNWG------------LYLNTLFWNLNY 217
+ +++P AL+ L+ W W L ++NW +L +F++L
Sbjct: 162 IVGTIIPMALIILLGAV----WLWMKKPLAISLNWHNFIPHFSHIPNLAFLVVVFFSLMG 217
Query: 218 WDSISTLVGEVEDPGKTLPRALFY-ALILVVFAYF----FPLLIGTGAAPVHRELWSDGY 272
+ + EV++P + PRAL+Y ALI+V+ A L++ A + L D
Sbjct: 218 IEMSAVHAEEVKNPERDYPRALYYSALIIVISAALSSTAIALIVPQQALNIVSGL--DQA 275
Query: 273 FSVIAKLIGGVWLRTWIQGASAVSNMGMFIAEMSSDSFQLLGMAERGMLPEIFARRSQYG 332
F++ WL + G A + + L+ AE G LP + R++ G
Sbjct: 276 FALFLNAFHLKWLLPVTIFIIILGGFGSMAAWVIGPTKGLMVAAEDGSLPAWMSYRNKRG 335
Query: 333 TPLVGILFSASGVILLSWLSFQEIVAAENFLYCF--------AMIME---FIAFVKLRMQ 381
PL G+L +++ L F ++ + N Y A+I F A ++LR +
Sbjct: 336 APL-GVLLMQVILVVFLCLLFL-LIPSFNTSYWILSDLTAQLALIFYIPFFAAAIRLRFK 393
Query: 382 YPEAIRPYKVPLGTVG 397
+ +++P G G
Sbjct: 394 TERKEKCFRIPGGNFG 409
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| RGD|1311633 Slc7a13 "solute carrier family 7 (anionic amino acid transporter), member 13" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 208 (78.3 bits), Expect = 6.3e-14, P = 6.3e-14
Identities = 99/437 (22%), Positives = 171/437 (39%)
Query: 32 FLIFYEVSGGPFGVEDSVMAAGPLLALIGFLFFPF--IWSIPEALITAEMGTMFPENGGY 89
FLI + G F V+ + + + F + S+ L AE+G FP +
Sbjct: 23 FLIINIIGAGIFVSPKGVLQYSSMNVGVSLCVWVFCAVLSMTSTLCAAEIGITFPYTVAH 82
Query: 90 VVWVASALGPHWGFQQGWMKWLSGVIDNALYPVLFLDY-LKSAIPALEG-GFPRIXXXXX 147
++ GP F + W +G A +L +Y ++ P+ P+
Sbjct: 83 YYFLKRCFGPFVAFLRLWTSLFTGPGVLASQALLLAEYGIQPFYPSCSAPAVPKKCLALA 142
Query: 148 XXXXXXYMNYRGLTIVGW---VAIVL--GVFSLVPFALMGLIAIPRLKPWRWCM--VDLK 200
+N RG+ + W V++VL G+ S + + + L+ R + R D +
Sbjct: 143 MLWIVGILNSRGVKELSWLQTVSMVLKMGILSFISLSGLFLLVTGRKENVRRLQNAFDAE 202
Query: 201 NVNWGLYLNTLF---WNLNYWDSISTLVGEVEDPGKTLPRALFYALILVVFAYFFPLLIG 257
+ +F + + S + + GE+++P KT+PR +F AL LV Y L
Sbjct: 203 FPEVSRLIEAIFQGYFAFSGGGSFTYVAGELKEPSKTIPRCIFTALPLVTVVYLLANLSY 262
Query: 258 TGAAPVHRELWSDGY-FSVIAKLIGGV-WLRTWIQGASAVSNMGMFIAEMSSDSFQLLGM 315
L SD + ++I + W + AS SN+ + E S S+ +
Sbjct: 263 LTVLSPQELLSSDAVALTWTDRVIPQLTWSVPFAISASLFSNLVTSVFETSRTSY----I 318
Query: 316 AER-GMLPEIFARRSQYGTPLVGILFSAS-GVILLSWLSFQEIVAAENFLYCFAMIMEFI 373
A R G LP + + + + +P + +L S G I + + E++ F++ ++ I
Sbjct: 319 ASRNGQLPLLCSTLNVHSSPFIAVLLDVSMGSIAIVLTNLIELINYLFFVFSIWTVLSVI 378
Query: 374 AFVKLRMQYPEAIRPYKVPLGTVGXXXXXXXXXXXXXXXXXXXSPKVMAISVIAVLIG-- 431
+KLR Q P RPYKV SPK+ I V +G
Sbjct: 379 GILKLRYQEPNLHRPYKV---FSPFLFITAAISLSMVLIPLIKSPKMQYIYVFLFFLGGL 435
Query: 432 FFIQPCMTYAEKRQWFR 448
F P + + K WF+
Sbjct: 436 LFYVPLIHFKLKLIWFQ 452
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| TIGR_CMR|BA_3213 BA_3213 "amino acid permease family protein" [Bacillus anthracis str. Ames (taxid:198094)] | Back alignment and assigned GO terms |
|---|
Score = 198 (74.8 bits), Expect = 6.3e-13, P = 6.3e-13
Identities = 81/348 (23%), Positives = 144/348 (41%)
Query: 44 GVEDSVMAAGPLLALIGFLFFPFIWSIPEALITAEMGTMFPENGGYVVWVASALGPHWGF 103
GV S+ AGP +++ + F I S P A A + +FP++GG +V ++ G H G
Sbjct: 29 GVTASI--AGPA-SIVSW-FIVIIISFPLAYSFASLARIFPDSGGAATFVRNSFGYHLGN 84
Query: 104 QQGWMKWLSGVIDNALYPVLFLDYLKSAIPALEGGFPRIXXXXXXXXXXXYMNYRGLTIV 163
GW +++ + + + Y+ A F I NY G+ +
Sbjct: 85 IVGWFYFVTAAVGQTIVSLTGAFYVSQAFGFSH--FETILIAVFILVIAGVSNYYGVNVS 142
Query: 164 GWVAIVLGVFSLVPFALMGLIAIPRLKPWRWCMVDLKNVNW---GLYLNTLFWNLNYWDS 220
G VA++L L+ FA +A PR++ W + N W G + +FW+ W++
Sbjct: 143 GKVALILSSLLLILFASAVFVAFPRIQ-WGNFNPFVPN-GWFSVGNAITVIFWSFFGWEA 200
Query: 221 ISTLVGEVEDPGKTLPRALFYALILVVFAYFFPLLIGTGAAPVHRELWSDGYFSVIA--K 278
I L + P K + + + +++ + L+ G A + + VI
Sbjct: 201 ICNLAEHFKRPEKDIVKGAVISAVVIGLLFLALSLVTIGTATYGSQESNLSPIGVIMGDT 260
Query: 279 LIGGVWLRTWIQGAS-AVSNMGMFIAEMSSDSFQLLGMAERGMLPEIFAR---RSQYGTP 334
+ GG + T + F+A ++ + L + G P+ F+R +Q
Sbjct: 261 VGGGAKVVTAVLALIICTGTANAFVASLTQLGYSL---SRDGAFPKFFSRLHATTQIPRQ 317
Query: 335 LV--GILFSASGVILLSWLS--FQEIVAAENFLYCFAMIMEFIAFVKL 378
+V I FS +GV++ LS F +I+ L ++ A VKL
Sbjct: 318 MVLFVICFSVAGVLVTKALSLTFDDILFIPTSLGILVYVLSMAAGVKL 365
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q6Z8D0 | PUT1_ORYSJ | No assigned EC number | 0.7046 | 0.9510 | 0.8418 | no | no |
| Q9C6S5 | PHSB_ARATH | No assigned EC number | 0.6970 | 0.9936 | 0.9434 | yes | no |
| A2X8M8 | PUT1_ORYSI | No assigned EC number | 0.7046 | 0.9510 | 0.8418 | N/A | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | GSVIVG00036168001 | SubName- Full=Chromosome chr3 scaffold_8, whole genome shotgun sequence; (469 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
 | GSVIVG00010723001 | SubName- Full=Chromosome undetermined scaffold_279, whole genome shotgun sequence; (209 aa) | • | 0.414 | |||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 470 | |||
| COG0531 | 466 | COG0531, PotE, Amino acid transporters [Amino acid | 1e-30 | |
| pfam13520 | 425 | pfam13520, AA_permease_2, Amino acid permease | 3e-28 | |
| TIGR00909 | 429 | TIGR00909, 2A0306, amino acid transporter | 3e-23 | |
| PRK10644 | 445 | PRK10644, PRK10644, arginine:agmatin antiporter; P | 5e-15 | |
| pfam00324 | 473 | pfam00324, AA_permease, Amino acid permease | 2e-13 | |
| PRK11357 | 445 | PRK11357, frlA, putative fructoselysine transporte | 3e-13 | |
| TIGR03813 | 474 | TIGR03813, put_Glu_GABA_T, putative glutamate/gamm | 8e-13 | |
| TIGR00910 | 507 | TIGR00910, 2A0307_GadC, glutamate:gamma-aminobutyr | 1e-11 | |
| COG0833 | 541 | COG0833, LysP, Amino acid transporters [Amino acid | 3e-11 | |
| TIGR00911 | 501 | TIGR00911, 2A0308, L-type amino acid transporter | 4e-11 | |
| TIGR00905 | 473 | TIGR00905, 2A0302, transporter, basic amino acid/p | 9e-10 | |
| COG1113 | 462 | COG1113, AnsP, Gamma-aminobutyrate permease and re | 1e-08 | |
| TIGR04298 | 429 | TIGR04298, his_histam_anti, histidine-histamine an | 1e-08 | |
| TIGR00908 | 442 | TIGR00908, 2A0305, ethanolamine permease | 2e-08 | |
| TIGR00913 | 478 | TIGR00913, 2A0310, amino acid permease (yeast) | 7e-07 | |
| PRK11049 | 469 | PRK11049, PRK11049, D-alanine/D-serine/glycine per | 4e-05 | |
| PRK10580 | 457 | PRK10580, proY, putative proline-specific permease | 1e-04 | |
| PRK10435 | 435 | PRK10435, cadB, lysine/cadaverine antiporter; Prov | 2e-04 | |
| TIGR03810 | 468 | TIGR03810, arg_ornith_anti, arginine-ornithine ant | 2e-04 | |
| PRK10197 | 446 | PRK10197, PRK10197, gamma-aminobutyrate transporte | 2e-04 | |
| PRK10249 | 458 | PRK10249, PRK10249, phenylalanine transporter; Pro | 0.004 |
| >gnl|CDD|223605 COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 122 bits (309), Expect = 1e-30
Identities = 94/405 (23%), Positives = 176/405 (43%), Gaps = 24/405 (5%)
Query: 48 SVMAAGPLLALIGFLFFPFIWSIPEALITAEMGTMFPENGGYVVWVASALGPHWGFQQGW 107
+ A L LI + F+ AL AE+ + P GG + ALGP GF GW
Sbjct: 42 GLAPAAILAWLIAGIIILFL-----ALSYAELSSAIPSAGGAYAYAKRALGPRLGFLAGW 96
Query: 108 MKWLSGVIDNALYPVLFLDYLKSAIPALE----GGFPRIVAVLLLTTALTYMNYRGLTIV 163
+ L+ VI A + YL P G I+ L L LT +N RG+
Sbjct: 97 LYLLAYVIALAAIAIGAASYLSYLFPGPGLLSIGPLLIILIALALIALLTLLNLRGIKAS 156
Query: 164 GWVAIVLGVFSLVPFALMGLIAIPRLKPWRWCMVDLKNVNWGLY------LNTLFWNLNY 217
+ ++ + ++ + ++ + + N G + + F+
Sbjct: 157 AKINSIITILKIIILLIFIILGLFAFGFSNGNLFAPFNPGGGSFGGILAAILLAFFAFTG 216
Query: 218 WDSISTLVGEVEDPGKTLPRALFYALILVVFAYFFPLLIGTGAAPVHRELWS--DGYFSV 275
+++I+TL EV++P +T+PRA+ +L++V+ Y L+ G P S ++
Sbjct: 217 FEAIATLAEEVKNPKRTIPRAIILSLLIVLILYILGALVIVGVLPAGDLAASAPSAPLAL 276
Query: 276 IAKLIGGVWLRTWIQGASAVSNMGMFIAEMSSDSFQLLGMAERGMLPEIFARRS-QYGTP 334
A GG W I + +S G +A + + S L MA G+LP+ FA+ + + TP
Sbjct: 277 AALFGGGNWGAIIIAILALLSLFGSLLAWILAVSRVLYAMARDGLLPKFFAKVNPKGRTP 336
Query: 335 LVGILFSASGVILL------SWLSFQEIVAAENFLYCFAMIMEFIAFVKLRMQYPEAIRP 388
++ ++ + ++L S ++F +V+ + + A ++ +A + LR + P+ RP
Sbjct: 337 VIALILTGIISLILLLLFPLSSIAFNALVSLASVAFLIAYLLVALALLVLRRKKPDLKRP 396
Query: 389 YKVPLGTVGAILLCIPPTLLILVVLALASPKVMAISVIAVLIGFF 433
+++PL + IL + LL+ + A P ++ ++
Sbjct: 397 FRLPLAPLIPILGIVAVLLLLYALYASGLPPLLLGVILIAGGIII 441
|
Length = 466 |
| >gnl|CDD|222193 pfam13520, AA_permease_2, Amino acid permease | Back alignment and domain information |
|---|
Score = 115 bits (291), Expect = 3e-28
Identities = 89/422 (21%), Positives = 172/422 (40%), Gaps = 24/422 (5%)
Query: 30 LVFLIFYEVSGGPFGVEDSVMAAGPLLALIGFLFFPFIWSIPEALITAEMGTMFPENGGY 89
L+ + G V + +AG L G++ I+S+ AL+ AE+ + FP NGG
Sbjct: 6 AFALVIGSIIGSGIFVTPLIASAGAAAILWGWIAA-LIFSLAVALVYAELSSAFPRNGGI 64
Query: 90 VVWVASALGPHWGFQQGWMKWLSGVIDNALYPVLFLDYLKSAIPALEGG--FPRIVAVLL 147
VW+ +A G F W WL+ ++ A + YL SA G + +
Sbjct: 65 YVWLKNAFGKPVAFIAAWFNWLAYILGLASSSSVAAQYLLSAFFPDLVGNTWLTYGIAIA 124
Query: 148 LTTALTYMNYRGLTIVGWVAIVLGVFS-LVPFALMGLIAIPRLKP-----WRWCMVDLKN 201
+ +N RG+ + +LG+ L+P L+ L+ +
Sbjct: 125 ILIIFALINIRGIKESAKIQNILGIVKLLLPLILIILLGLVLALGGGFNLLPNSWTTFFP 184
Query: 202 VNWGLYLNTL---FWNLNYWDSISTLVGEVEDPGKTLPRALFYALILVVFAYFFPLLIGT 258
W L W+ ++S + + EV + +P+ALF L++V Y ++
Sbjct: 185 SGWPGVFLGLLIVLWSFGGFESAANVSEEV--KKRDVPKALFIGLLIVGVLYLLVNILFL 242
Query: 259 GAAPVHRELWSDGYFSVIAKL---IGGVWLRTWIQGASAVSNMGMFIAEMSSDSFQLLGM 315
G P SV A L +GG W + A+S +G + + S L +
Sbjct: 243 GVVPDDEIAKLSNLPSVAALLFEAVGGPWGAIIVVILLALSLLGAVNTAIVASSRVLEAL 302
Query: 316 AERGMLPEIFARRSQYGTPLVGILFSASGVILLSWL------SFQEIVAAENFLYCFAMI 369
A G+LP+ FA+ +++G+P+ ++ +A ++L L ++ +++ Y +
Sbjct: 303 ARDGVLPKFFAKVNKFGSPVRALILTAILSLILLLLFLLSGAAYNALLSLSAVGYLLVYL 362
Query: 370 MEFIAFVKLRMQYPEAIR-PYKVPLGTVGAILLCIPPTLLILVVLALASPKVMAISVIAV 428
+ I + LR + P+ R + P+ + + + L ++ + ++I V
Sbjct: 363 LLIIGLLILRKKRPDLPRIKGRWPVAILAILFILFLLVALFFPPGGPSTGSNLNYAIILV 422
Query: 429 LI 430
++
Sbjct: 423 VV 424
|
Length = 425 |
| >gnl|CDD|129987 TIGR00909, 2A0306, amino acid transporter | Back alignment and domain information |
|---|
Score = 101 bits (253), Expect = 3e-23
Identities = 78/343 (22%), Positives = 140/343 (40%), Gaps = 15/343 (4%)
Query: 73 ALITAEMGTMFPENGGYVVWVASALGPHWGFQQGWMKWLSGVIDNALYPVLFLDYLKSAI 132
AL+ AE+ M P G + A+G F GW WL + A V + YL+ +
Sbjct: 53 ALVYAELAAMLPVAGSPYTYAYEAMGELTAFIIGWSLWLEYGVAVAAVAVGWGGYLQEFL 112
Query: 133 PALEGGFPRIVAV------------LLLTTALTYMNYRGLTIVGWVAIVLGVFSLVPFAL 180
P + P ++ LL+ LTY+ Y G G V +L V + L
Sbjct: 113 PGVGLDLPAVLTAKPGNGGVFNLPALLIVLFLTYILYLGAKESGKVNDILVVLKVAALLL 172
Query: 181 MGLIAIPRLKPWRWC-MVDLKNVNWGLYLNTLFWNLNYWDSISTLVGEVEDPGKTLPRAL 239
+ + + + G +F+ +++IST EV++P + +P+A+
Sbjct: 173 FAALGAIHFASNNYTPFMPMGFGGVGAATALVFFAFIGFEAISTAAEEVKNPERDIPKAI 232
Query: 240 FYALILVVFAYFFPLLIGTGAAPVHRELWSDGYFSVIAKLIGGVWLRTWIQGASAVSNMG 299
+LI+V Y + GA P + S S++ +G + + S
Sbjct: 233 ILSLIVVTLLYVLVAAVILGAVPWRQLAGSTAPLSLVGYDLGQGIGGLILTAGAVFSIAS 292
Query: 300 MFIAEMSSDSFQLLGMAERGMLPEIFAR-RSQYGTPLVGIL-FSASGVILLSWLSFQEIV 357
+ +A + S L M+ G+LP ++ + GTP + I+ FS + +L S + + +
Sbjct: 293 VMLAGIYGTSRVLFAMSRDGLLPGSLSKVHPKTGTPHMSIIIFSLTAALLASLVPLEGLA 352
Query: 358 AAENFLYCFAMIMEFIAFVKLRMQYPEAIRPYKVPLGTVGAIL 400
+ A +A + LR + P+ R ++ PL V +L
Sbjct: 353 ELTSIGTLIAFAAVNVAVIILRRRRPDIQRAFRCPLVPVLPVL 395
|
[Transport and binding proteins, Amino acids, peptides and amines]. Length = 429 |
| >gnl|CDD|182613 PRK10644, PRK10644, arginine:agmatin antiporter; Provisional | Back alignment and domain information |
|---|
Score = 76.8 bits (189), Expect = 5e-15
Identities = 72/337 (21%), Positives = 130/337 (38%), Gaps = 30/337 (8%)
Query: 23 QKVSVIPLVFLIFYEVSGGPFGVEDSVMAAGPLLALIGFLFFPFIWSIPEALITAEMGTM 82
KV +IP+ ++ + G + + +A+ +A+ G+L I ++ +++ A+M ++
Sbjct: 8 HKVGLIPVTLMVAGNIMGSGVFLLPANLASTGGIAIYGWLV-TIIGALGLSMVYAKMSSL 66
Query: 83 FPENGGYVVWVASALGPHWGFQQGWMKWLSGVIDNALYPVLFLDYLKSAIPALEGGFPRI 142
P GG + GP G+Q + WL+ I N V+ + YL P L+
Sbjct: 67 DPSPGGSYAYARRCFGPFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPILKDPLVLT 126
Query: 143 VAVLLLTTALTYMNYRGLTIVGWVAIVLGVFSLVPFALMGLIAIPRLKPWRWCMVDLKNV 202
+ +++ +N G ++ V V V +L+P + + W W +
Sbjct: 127 ITCVVVLWIFVLLNIVGPKMITRVQAVATVLALIPIVGIAVFG------WFWFRGETYMA 180
Query: 203 NW-----------GLYLNTLFWNLNYWDSISTLVGEVEDPGKTLPRALFYALILVVFAYF 251
W LN W+ +S S G V++P + +P A +++ Y
Sbjct: 181 AWNVSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPIATIGGVLIAAVCYV 240
Query: 252 FPLLIGTGAAPVHRELWSDGYFSVIAKLIGGVWLRTWIQGASAVSNMGMFIAEMSSDSFQ 311
G P S F A++ G + VS S +
Sbjct: 241 LSSTAIMGMIPNAALRVSASPFGDAARMALGDT------AGAIVSFCAAAGCLGSLGGWT 294
Query: 312 LL------GMAERGMLPEIFARRSQYGTPLVGILFSA 342
LL A+ G+ P IFAR ++ GTP+ G+L
Sbjct: 295 LLAGQTAKAAADDGLFPPIFARVNKAGTPVAGLLIVG 331
|
Length = 445 |
| >gnl|CDD|215858 pfam00324, AA_permease, Amino acid permease | Back alignment and domain information |
|---|
Score = 71.6 bits (176), Expect = 2e-13
Identities = 75/357 (21%), Positives = 129/357 (36%), Gaps = 39/357 (10%)
Query: 51 AAGPLLALIGFLFFPFIWSIPEALITAEMGTMFPENGGYVVWVASALGPHWGFQQGWMKW 110
AGP AL+G+L + L EM T P GG+ + + LGP GF GW W
Sbjct: 25 QAGPAGALLGYLI-AGVVIFLTMLSLGEMSTNGPVAGGFYAYASRFLGPSLGFATGWNYW 83
Query: 111 LSGV--IDNALYPVLFLDYLKSAIPALEGGFPRIVAVLLLTTALTYMNYRGLTIVGWVAI 168
LS + I L L +P + + ++L + + +G +
Sbjct: 84 LSWIFVIALELTAASILIQFWELVPDIPYLWVWGAVFIVLLLIINLVGVKGYGEAEFWFA 143
Query: 169 VLGVFSLVPFALMGLIAIPRLK-----PWRWCMVDLKNVNWGLYLNTLFWNLN------- 216
++ V +++ F ++G I + N G N
Sbjct: 144 LIKVIAIIGFIIVGFIIPLSGGGPNDGAYLGYNGGKNNFPPGFASPGTGSFANFFSVFVI 203
Query: 217 ------YWDSISTLVGEVEDPGKTLPRALFYALILVVFAYFFPLLIGTGAAPVHRELWSD 270
+ + GEV++P K +P+A+ A+ + Y LL P W+D
Sbjct: 204 AFFAFTGIELVGNAAGEVKNPRKAIPKAILQAVWRITIFYILSLLAIGLLVP-----WND 258
Query: 271 -GYFSVIAKLIGGVWLRTWIQGASAVS---NMGMFIAEMSS-------DSFQLLGMAERG 319
G + A + G S ++ N + A +S+ S L +A G
Sbjct: 259 PGLLADSASAASPFVIFFKSLGISGLAPLINAVILTAALSAANSSLYSGSRVLYALARDG 318
Query: 320 MLPEIFARRSQYGTPLVGILFS-ASGVILLSWLSFQEIVAAENFLYCFAMIMEFIAF 375
+ P+ + + G PL IL S A ++ + S + NFL + ++ I +
Sbjct: 319 LAPKFLKKVDKSGVPLRAILLSTAISLLAVLLASLNPAIVF-NFLLAISGLIGLIVW 374
|
Length = 473 |
| >gnl|CDD|183096 PRK11357, frlA, putative fructoselysine transporter; Provisional | Back alignment and domain information |
|---|
Score = 71.0 bits (174), Expect = 3e-13
Identities = 83/409 (20%), Positives = 162/409 (39%), Gaps = 25/409 (6%)
Query: 51 AAGPLLALIGFLFFPFIWSIPEALITAEMGTMFPENGGYVVWVASALGPHWGFQQGWMK- 109
A P L ++ F+ I IP+ + AE+ T +PENG V++ +A F GW
Sbjct: 39 AGTPWLTVLAFVIGGLI-VIPQMCVYAELSTAYPENGADYVYLKNAGSRPLAFLSGWASF 97
Query: 110 WLSGVIDNALYPVLFLDYLKSAIPALEGGFPRIVAVLLLTTALTYMNYRGLTIVGWVAIV 169
W + ++ + + L P ++ + +A L+ A ++ R + +
Sbjct: 98 WANDAPSLSIMALAIVSNLGFLTP-IDPLLGKFIAAGLII-AFMLLHLRSVEGGAAFQTL 155
Query: 170 LGVFSLVPFALMGLIAIPRLKPWRWCMVDLKNVNWGLYLNTLF-------WNLNYWDSIS 222
+ + ++PF ++ + I K + + L W+ SI
Sbjct: 156 ITIAKIIPFTIVIGLGIFWFKAENFAAPTTTAIGATGSFMALLAGISATSWSYTGMASIC 215
Query: 223 TLVGEVEDPGKTLPRALFYALILVVFAYFFPLLIGTGAAPVHRELWSDGYFSVIAKLIGG 282
+ GE+++PGKT+PRAL + +LV+ Y L+ +G P + S+ S I
Sbjct: 216 YMTGEIKNPGKTMPRALIGSCLLVLVLYTLLALVISGLMPFDKLANSETPISDALTWIPA 275
Query: 283 VWLRTWIQGASAVSNMGMFIAEMSS-DSFQLLG---MAERGMLPEIFAR-RSQYGTPLVG 337
L + A++ M + + +SS +Q MA+ + + F +Y TP V
Sbjct: 276 --LGSTAGIFVAITAMIVILGSLSSCVMYQPRLEYAMAKDNLFFKCFGHVHPKYNTPDVS 333
Query: 338 ILFSASGVILLSWL-SFQEIVAAENFLYCFAMIMEFIAFVKLRMQYPEAIRP-YKVPLGT 395
I+ + I ++ ++ + CF + F + + R + + +P ++ P
Sbjct: 334 IILQGALGIFFIFVSDLTSLLGYFTLVMCFKNTLTFGSIIWCRKR--DDYKPLWRTPAFG 391
Query: 396 VGAILLCIPPTLLILVVLALASPKVMAISVIAVLIGFFIQPCMTYAEKR 444
+ L +L+ A + +VI + G P + KR
Sbjct: 392 LMTTLAIASSLILVASTFVWAPIPGLICAVIVIATGL---PAYAFWAKR 437
|
Length = 445 |
| >gnl|CDD|163525 TIGR03813, put_Glu_GABA_T, putative glutamate/gamma-aminobutyrate antiporter | Back alignment and domain information |
|---|
Score = 69.8 bits (171), Expect = 8e-13
Identities = 105/442 (23%), Positives = 179/442 (40%), Gaps = 57/442 (12%)
Query: 55 LLALIGFLFFPFIWSIPEALITAEMGTMFPENGGYVVWVASALGPHWGFQQGWMKWLS-- 112
L A +LF + +P +L+ AE+ T +PE GG WV A G WGF +M W
Sbjct: 30 LSAAFYYLFAAIFFLVPVSLVAAELATAWPEKGGVFRWVGEAFGARWGFLAIFMLWAQVT 89
Query: 113 ----GVIDNALYPVLFLDYLKSAIPALEGG-FPRIVAVLLLTTALTYMNYRGLTIVGWVA 167
V+ + F+ + +L G +V+VL + T++ RG+ VA
Sbjct: 90 IWFPTVLTFGAVSLAFIGPEATVDESLAGNKLYVLVSVLFVYWLATFIALRGVAAFTKVA 149
Query: 168 IVLGVF-SLVPFALMGLIAIPRLK-------PWRWCMV--DLKNVNWGLYLNTLFWNLNY 217
G+ +++P A++ ++ I L P RW D N + + ++F
Sbjct: 150 KWGGIVGTIIPAAILVILGISYLLTGGESQIPLRWDDAFPDFTNFDNVVLAASIFLFYAG 209
Query: 218 WDSISTLVGEVEDPGKTLPRALFYA-----LILVVFAYFFPLLIGTGAAPVHRELWS--D 270
+ + V +V++P K P A+ A LI V+ +I + + L D
Sbjct: 210 MEMNAVHVKDVDNPDKNYPIAILIAALGTVLIFVLGTLAIAFIIPREDISLTQSLLVAFD 269
Query: 271 GYFSVIAKLIGGVWLRTWIQGASAVSNMGMFIAEMSSDSFQLLGMAERGMLPEIFARRSQ 330
F G WL + A A+ + + ++ S +L +A+ G LP F + ++
Sbjct: 270 NAF----HWAGLSWLGPILAFALAIGVLAGVVTWVAGPSSGMLAVAKAGYLPTFFQKTNK 325
Query: 331 YGTPLVGILFSASGVILLSWL---------SFQEIVAAENFLYCFAMIMEFIAFVKLRMQ 381
G P+ + V +LS L +FQ + LY ++ F + + LR
Sbjct: 326 NGMPIHIMFVQGIAVSVLSVLFVVMPSVQAAFQILSQLTVILYLVMYLLMFASAIYLRYS 385
Query: 382 YPEAIRPYKVP-----------LGTVGAILL----CIPPTLLILVVLALASPKVMAISVI 426
P+ RPY++P LG VG+ L IPP+ + SP +I
Sbjct: 386 QPDRPRPYRIPGGLAGMWFIGGLGFVGSALAFVLSFIPPSQ-----IGTGSPTRYVGLLI 440
Query: 427 AVLIGFFIQPCMTYAEKRQWFR 448
+ F P + YA ++ +R
Sbjct: 441 GLAALFVTAPFLIYARRKPHWR 462
|
Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain. Length = 474 |
| >gnl|CDD|129988 TIGR00910, 2A0307_GadC, glutamate:gamma-aminobutyrate antiporter | Back alignment and domain information |
|---|
Score = 66.1 bits (161), Expect = 1e-11
Identities = 97/394 (24%), Positives = 162/394 (41%), Gaps = 42/394 (10%)
Query: 56 LALIGFLFFP-FIWSIPEALITAEMGTMFP-ENGGYVVWVASALGPHWGFQQ---GWMKW 110
L+ FL +W IP AL AEM T+ E GG WV++ LG +GF GW +
Sbjct: 33 FHLVFFLLLGGILWFIPVALCAAEMATVDGWEEGGIFAWVSNTLGERFGFAAIFFGWFQI 92
Query: 111 LSGVIDNALYPVLFLDYLKSAIPAL-EGGFPRIVAVLLLTTALTYMNYRG------LTIV 163
G I + + L Y+ PAL E + +A L++ AL + + G +
Sbjct: 93 AIGFIPMIYFILGALSYILK-FPALNEDPIIKFIAALIIFWALAFSQFGGTKRTAKIAKA 151
Query: 164 GWVA-IVLGVFSLVPFALMGL-----IAIPRLKPWRWCMVDLKNVNWGLYLNTLFWNLNY 217
G+ A I++ F L A IAI D V +
Sbjct: 152 GFFAGILIPAFILFALAAAYFHGGAPIAIEIDS--HAFFPDFSKVGTLVVFVAFIGAYMG 209
Query: 218 WDSISTLVGEVEDPGKTLPRALFYALILVVFAYFFPLLIGTGAAPV--HREL-WSDGYFS 274
++ ++ + E+E+PG+ P A+ ++L++ A + G A V +E+ S G
Sbjct: 210 VEASASHINELENPGRDYPLAM---ILLMIAAICLDAIGGFSIAAVIPGKEINLSAGVIQ 266
Query: 275 VIAKLIGGV-----WLRTWIQGASAVSNMGMFIAEMSSDSFQLLGMAERGMLPEIFARRS 329
LI WL I A + + + S + A++G+LP FA+ +
Sbjct: 267 TFQTLILHFAHEIEWLVKVIAALIAFGVLAEIASWIVGPSRGMFAAAQKGLLPAAFAKMN 326
Query: 330 QYGTPLV-----GILFSASGVILLSW-----LSFQEIVAAENFLYCFAMIMEFIAFVKLR 379
++ P+ GI+ S +G IL LSF +A +Y A + FI + L
Sbjct: 327 KHEVPVPLVIIQGIITSIAGAILTFGGGGNNLSFLIAIALTVVIYLCAYFLFFIGYFVLI 386
Query: 380 MQYPEAIRPYKVPLGTVGAILLCIPPTLLILVVL 413
+++P+ R + +P G G +++ LL +
Sbjct: 387 LKHPDLKRTFNIPGGIGGKLIIAGIGFLLSIFAF 420
|
Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009 [Transport and binding proteins, Amino acids, peptides and amines]. Length = 507 |
| >gnl|CDD|223903 COG0833, LysP, Amino acid transporters [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 65.0 bits (159), Expect = 3e-11
Identities = 98/456 (21%), Positives = 168/456 (36%), Gaps = 115/456 (25%)
Query: 52 AGPLLALIGFLFFPF-IWSIPEALITAEMGTMFPENGGYVVWVASALGPHWGFQQGWMKW 110
AGP LI +L ++ + ++L E+ +P +G + + + P +GF GW W
Sbjct: 75 AGPAGLLIAYLIIGIMVYFVMQSL--GELAVFYPVSGSFSTYATRFVDPAFGFALGWNYW 132
Query: 111 LSGVIDNALYPVLFLDYLKSAIPA---LEGGFPRIVAVLLLTTALTYMNYRGLTIVG--- 164
L+ + L L+ +++ P + + + + +N G+ G
Sbjct: 133 LNWAV------TLPLELTAASLVIQYWFPDTVPPWIWIAIFLVLIFLLNLFGVKGFGETE 186
Query: 165 -WVAIVLGVFSLVPFALMGLIAIPRLKPWRWCMVDLKNVNWGLYLNTLFWNLNYWDS--- 220
W + + V +++ F ++G+I I G + NYW
Sbjct: 187 FWFSSI-KVLTIIGFIILGIIII-----------------CGGGPTHGYIGFNYWHDPGA 228
Query: 221 --------ISTLV----------------GEVEDPGKTLPRA---------LFYALILVV 247
S V GE E+P K++P+A LFY L + V
Sbjct: 229 FAGGFKGFCSVFVIAAFSFSGTELVGLAAGESENPRKSIPKAIKQVFWRILLFYILSIFV 288
Query: 248 FA----YFFPLLIGTGAAPVHRELW----SDGYFSVIAKLIGGVWLRTWIQGASAVS--N 297
Y P L+G ++ V + + V A ++ V L S +S N
Sbjct: 289 IGLLVPYNDPRLLGNSSSGVAASPFVIAIKNAGIPVAASIMNAVIL------TSVLSAAN 342
Query: 298 MGMFIAEMSSDSFQLLGMAERGMLPEIFARRSQYGTPLVGILFSASGVILLSWLSFQEIV 357
G++ + S L +A++G P+IFA+ + G PLV +L + LL++L+
Sbjct: 343 SGLYAS-----SRMLYSLAKQGKAPKIFAKVDRRGVPLVALLVTLL-FGLLAFLN-SSFK 395
Query: 358 AAENFLYCFAM--IMEFIAFV-------KLRMQYPEAIR-----PYKVPLGTVGAILLCI 403
F + + + FIA+ + R R PYK P G G I I
Sbjct: 396 ETTVFNWLLNISGLSGFIAWGSICLSHIRFRRAMKAQGRSLDELPYKSPFGPYGPIYGLI 455
Query: 404 PPTLLILVVL-----ALASPKVMAISVIAVLIGFFI 434
L IL+++ A A A +G I
Sbjct: 456 ---LCILILIGQGYVAFFPIGFSAGDFFAAYLGLPI 488
|
Length = 541 |
| >gnl|CDD|233179 TIGR00911, 2A0308, L-type amino acid transporter | Back alignment and domain information |
|---|
Score = 64.8 bits (158), Expect = 4e-11
Identities = 102/416 (24%), Positives = 169/416 (40%), Gaps = 47/416 (11%)
Query: 67 IWSIPEALITAEMGTMFPENGGYVVWVASALGPHWGFQQGWMKWLSGVIDNALYPVLFLD 126
I+SI AL+ AE+GT P++GG ++ GP F + W++ L VI V L+
Sbjct: 88 IFSIVGALVYAELGTTIPKSGGEYNYILEVFGPLLAFLRLWIELL--VIRPGSQAVNALN 145
Query: 127 YLKSAIPALEGGFP---------RIVAVLLLTTALTYMNYRGLTIVGWVAIVLGVFSLVP 177
+ AI L FP R+VAVL + LT +N + V + L+
Sbjct: 146 F---AIYILTPVFPDCEVPEWAIRLVAVLCVLL-LTLVNCLSVKWATRVQDIFTACKLLA 201
Query: 178 FALMGLIAIPRLKPWRWCMVDLKNV---------NWGLYLNTLFWNLNYWDSISTLVGEV 228
L+ + +L ++ KN L + W W+ ++ + EV
Sbjct: 202 LLLIIITGWVQLGKGGVESLNPKNAFEGTETSAGGIVLAFYSGIWAYGGWNYLNFVTEEV 261
Query: 229 EDPGKTLPRALFYALILVVFAYFFPLLIGTGAAPVHRELWSDGYFSVIAKLIGGV--WLR 286
++P +TLP A+ ++ +V F Y + L S + + GV W
Sbjct: 262 KNPYRTLPIAIIISMPIVTFIYVLTNIAYFTVLSPEELLASLAVAVDFGERLLGVMSWAM 321
Query: 287 TWIQGASAVSNMGMFIAEMSSDSFQLLGMAERGMLPEIFAR-RSQYGTPLVGILFSASGV 345
+ G S ++ + S F G LP + + + TPL +L +
Sbjct: 322 PALVGLSCFGSVNGSLFSSSRLFFVG---GREGHLPSLLSMIHVKRLTPLPSLLIVCTLT 378
Query: 346 ILLSWLSFQEIVAAENFLYCFAMIMEFIA---FVKLRMQYPEAIRPYKVPLGTVGAILLC 402
+L+ L +I + N + + +A + LR + PE RP KVPL LL
Sbjct: 379 LLM--LFSGDIYSLINLISFANWLFNALAVAGLLWLRYKRPEMNRPIKVPLFFPVFFLL- 435
Query: 403 IPPTLLILVVLALASPKV-----MAISVIAVLIGFFIQPCMTYAEKRQWFRFSMSS 453
+ L L++L+L SP V I + V + FF + + K +WFR+ + S
Sbjct: 436 ---SCLFLIILSLYSPPVGCGVGFIIMLTGVPVYFF---GVWWQNKPKWFRYLIVS 485
|
[Transport and binding proteins, Amino acids, peptides and amines]. Length = 501 |
| >gnl|CDD|129983 TIGR00905, 2A0302, transporter, basic amino acid/polyamine antiporter (APA) family | Back alignment and domain information |
|---|
Score = 60.1 bits (146), Expect = 9e-10
Identities = 88/416 (21%), Positives = 155/416 (37%), Gaps = 59/416 (14%)
Query: 51 AAGPLLALIGFLFFPFIWSIPEALITAEMGTMFPE-NGGYVVWVASALGPHWGFQQGWMK 109
AGP +IG++ + + A + A + T PE +GG + GP+ GF GW
Sbjct: 37 VAGPGAVIIGWII-TGVGMLALAFVFAILATKKPELDGGIYAYAREGFGPYIGFMSGWGY 95
Query: 110 WLSGVIDNALYPVLFLDYLKSAIPALEGG--FPRIVAVLLLTTALTYMNYRGLTIVGWVA 167
WLS I N Y VL L P G P I+ +L T++ RG+ ++
Sbjct: 96 WLSAWIGNVAYAVLLFSALGYFFPLFGSGNPVPSILGASVLLWVFTFLVLRGVRQAAFIN 155
Query: 168 IVLGVFSLVPFALMGLIAIPRLKPWRWCMVDLKNVNW----------------GLYLNTL 211
+ + L+P L +I W W +DL ++ L TL
Sbjct: 156 TITTIAKLIPLFLFIIIG------WFWFKLDLFTADFWGHDVPSLGSVFSQVKNTMLVTL 209
Query: 212 FWNLNYWDSISTLVGEVEDPGKTLPRALFYALILVVFAYFFPLLIGTGAAPVHRELWS-- 269
W + G ++ + +A + + Y L+ G P EL +
Sbjct: 210 -WVFIGIEGAVVSSGRAKNK-SDVGKATVLGTLGALVIYILITLLSLGVLPQQ-ELANLP 266
Query: 270 DGYFSVIAKLIGGVWLRTWIQGASAVSNMG------MFIAEMSSDSFQLLGMAERGMLPE 323
+ + + ++I G W I +S +G M AE+ A+ G+ P+
Sbjct: 267 NPSMAAVLEMIVGKWGAVLISLGLIISVLGSLLSWTMLAAEV------PFSAAKDGLFPK 320
Query: 324 IFARRSQYGTPLVGILFSA---SGVILLSWLS---FQEIV--AAENFLYCFAMIMEFIAF 375
IF R ++ G P V +L + +LL+ L+ + +V A L + + ++
Sbjct: 321 IFGRVNKNGAPSVALLLTNILIQLFLLLTLLTSSAYNVLVSLAVVMILVPYLLSAAYLLK 380
Query: 376 VKLRMQYPEAIRPYKVPLGTVGAILLCIPPTLLILVVLALASPKVMAISVIAVLIG 431
+ YP+ + +G + + + +L A K + + I G
Sbjct: 381 LAKVGTYPKIKNRKALIVGVIA--------CVYSIWLLYAAGLKYLLLGFILYAPG 428
|
This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions [Transport and binding proteins, Amino acids, peptides and amines]. Length = 473 |
| >gnl|CDD|224038 COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 56.9 bits (138), Expect = 1e-08
Identities = 90/422 (21%), Positives = 162/422 (38%), Gaps = 59/422 (13%)
Query: 51 AAGP--LLA--LIGFLFFPFIWSIPEALITAEMGTMFPENGGYVVWVASALGPHWGFQQG 106
AGP LLA + G F + ++ EM P +G + + LGP GF G
Sbjct: 43 MAGPSVLLAYLIAGIFVFLIMRAL------GEMLVANPVSGSFSDYARKYLGPWAGFLTG 96
Query: 107 WMKWLSGVIDNALYPVLFLDYLKSAIPALEGGFPRIVAVLLLTTALTYMNYRGLTIVG-- 164
W W V+ YL+ P P+ V L L +N + + G
Sbjct: 97 WTYWFFWVLVGIAELTAIGIYLQFWFP----DVPQWVFALAAVVLLLAVNLISVKVFGEL 152
Query: 165 --WVAIVLGVFSLVPFALMGLIAIPRLKPWRWCMVDLKNV-NWGLYLNTLFWNLNYWDSI 221
W A++ V +++ F ++G++ + N+ + G + F ++
Sbjct: 153 EFWFALIK-VAAIIAFIVVGIVLLFGGFGGGGGAAGFSNLWDHGGFFPNGFLGF--LSAL 209
Query: 222 STLV-------------GEVEDPGKTLPRALFYALILVVFAYFFPLLIGTGAAPVHRELW 268
++ E +DP K +P+A+ + ++ Y L + P ++
Sbjct: 210 QIVMFAFGGIELVGITAAEAKDPEKAIPKAINSVIWRILIFYVGSLFVILSLYPWNQIGE 269
Query: 269 SDGYFSVIAKLIGGVWLRTWIQGASAVSNMGMFIAEMS-------SDSFQLLGMAERGML 321
F + LIG I A+ + N + A +S S S L +A++G
Sbjct: 270 DGSPFVTVFSLIG-------IPFAAGIMNFVVLTAALSALNSGLYSTSRMLYSLAKQGDA 322
Query: 322 PEIFARRSQYGTPLVGILFSA----SGVILLSWL---SFQEIVAAENFLYCFAMIMEFIA 374
P+ FA+ S+ G P+ IL SA GV+L L F+ + ++ F +M ++
Sbjct: 323 PKAFAKLSKRGVPVNAILLSAVVLLLGVVLNYILPEKVFELVTSSSGLGLLFVWLMILLS 382
Query: 375 FVKLRMQYPEAIR--PYKVPLGTVGAILLCIPPTLLILVVLALASPKVMAISVIAVLIGF 432
+KLR P + +K+PL L + +LV++ +++ V V +
Sbjct: 383 QLKLRKAKPAEGKKLKFKMPLYPFTNY-LTLAFLAFVLVLMLFDPDTRISLLVGPVWLVL 441
Query: 433 FI 434
Sbjct: 442 LG 443
|
Length = 462 |
| >gnl|CDD|213911 TIGR04298, his_histam_anti, histidine-histamine antiporter | Back alignment and domain information |
|---|
Score = 56.5 bits (136), Expect = 1e-08
Identities = 69/289 (23%), Positives = 111/289 (38%), Gaps = 10/289 (3%)
Query: 64 FPFIWSIPEALITAEMGTMFPENGGYVVWVASALGPHWGFQQGWMKWLSGVIDNALYPVL 123
F I I AL+ A+ + GG V + A GP GFQ W+S I N V
Sbjct: 40 FTIIGVIALALVFAKTSLIHERIGGIVAYARDAFGPFIGFQSTIAYWISAWIGNVALLVA 99
Query: 124 FLDYLKSAIPALE----GGFPRIVAVLLLTTALTYMNYRGLTIVGWVAIVLGVFSLVPFA 179
+ YL P L+ G +A +++ A ++ G + G + L
Sbjct: 100 GVGYLAFFFPELKDPTVGTTYGCIAAIIILWAFVFLASFGAKVAGRAQSFTAICGLAVIL 159
Query: 180 LMGLIAIPRLKPWRWCMV--DLKNVNWGLYLNT---LFWNLNYWDSISTLVGEVEDPGKT 234
+G+ KP + V N N+ + W +S G+VE+P KT
Sbjct: 160 GVGIFGWFWFKPEMYLEVINATGNSNFSAIIAAASIALWGFLGIESAVVSTGQVENPEKT 219
Query: 235 LPRALFYALILVVFAYFFPLLIGTGAAPVHRELWSDGYFSVIAKLIGGVWLRTWIQGA-S 293
+P+A L++ Y + G P + S F+ AK + L I A S
Sbjct: 220 VPKATVMGLLIAAVCYVASCTVIAGIIPHEVLINSAAPFADAAKYMFDNELAGNIASALS 279
Query: 294 AVSNMGMFIAEMSSDSFQLLGMAERGMLPEIFARRSQYGTPLVGILFSA 342
++ G S AE+G+ P+ FA ++ P+ ++F+A
Sbjct: 280 IIACFGSISGWFILQSEAPRAAAEQGLFPKFFADLNKNDVPMKSLIFTA 328
|
Members of this protein family are antiporters that exchange histidine with histamine, product of histidine decarboxylation. A system consisting of this protein, and a histidine decarboxylase encoded by an adjacent gene, creates decarboxylation/antiport proton-motive cycle that provides a transient resistance to acidic conditions. Length = 429 |
| >gnl|CDD|129986 TIGR00908, 2A0305, ethanolamine permease | Back alignment and domain information |
|---|
Score = 55.6 bits (134), Expect = 2e-08
Identities = 87/421 (20%), Positives = 152/421 (36%), Gaps = 38/421 (9%)
Query: 36 YEVSGGPFGVEDSVMAAGPLLALIGFLFFP-----FIWSIPEALITAEMGTMFPENGGYV 90
Y +SG G + G ++ L F +S+ AE+ TM P GG
Sbjct: 21 YVISGDYAGWNFGLAQGGWGGFVVATLLVATMYLTFCFSL------AELSTMIPTAGGGY 74
Query: 91 VWVASALGPHWGFQQGWMKWLSGVIDNALYPVLFLDYLKSAIPALEGGFPRIVAVLLLT- 149
+ A GP GF G + Y +S P G +V ++
Sbjct: 75 GFARRAFGPWGGFLAGTAILIEFAFAPPAIACFIGAYCESLFPVGPGWLAALVFYIVFIG 134
Query: 150 -------TALTYMNYRGLTIVGWVAIV-LGVFSLVP---FALMGLIAIPRLKPWRWCMVD 198
A +V VAI+ LGVF F L P
Sbjct: 135 INILGVGEAAKLE-----FVVTAVAIIALGVFIGAMVPHFDSANLFNGP----QTGASSF 185
Query: 199 LKNVNWGLYLNTLF--WNLNYWDSISTLVGEVEDPGKTLPRALFYALILVVFAYFFPLLI 256
L G++ F W + ++ E ++P + +PR L A++ ++ L++
Sbjct: 186 LPGAYVGVFAAIPFAIWFFLAVEGVAMAAEETKNPKRDIPRGLIGAILTLLALAAGILVV 245
Query: 257 GTGAAPVHRELWSDGYFSVIAKLI--GGVWLRTWIQGASAVSNMGMFIAEMSSDSFQLLG 314
G GAA + S+ + I G W+ ++ + F + S Q+
Sbjct: 246 GPGAADAKELMGSNNPLPEALESIYGGSTWMSQFVNLVGLFGLIASFHGIIYGYSRQIFA 305
Query: 315 MAERGMLPEIFARRSQYGTPLVGILF-SASGVILLSWLSFQEIVAAENFLYCFAMIMEFI 373
++ G LPE ++ ++ P++ I+ G L I+ F + ++
Sbjct: 306 LSRAGYLPESLSKVNRKKAPVLAIVVPGVIGFGLSLTGQTALIILVSVFGAIISYVLSMA 365
Query: 374 AFVKLRMQYPEAIRPYKVPLGTV-GAILLCIPPTLLILVVLALASPKVMAISVIAVLIGF 432
A LR++ P+ RPY+ P G + + L + L+ V A+++ VLIG+
Sbjct: 366 AHFTLRIRRPDMERPYRTPGGILTPGVALVLACVALVTGFYVDPRVVVGAVAIFVVLIGY 425
Query: 433 F 433
+
Sbjct: 426 Y 426
|
The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily [Transport and binding proteins, Amino acids, peptides and amines]. Length = 442 |
| >gnl|CDD|233181 TIGR00913, 2A0310, amino acid permease (yeast) | Back alignment and domain information |
|---|
Score = 51.1 bits (123), Expect = 7e-07
Identities = 80/434 (18%), Positives = 152/434 (35%), Gaps = 115/434 (26%)
Query: 52 AGPLLALIGFLFFPF-IWSIPEALITAEMGTMFPE-NGGYVVWVASALGPHWGFQQGWMK 109
GP LIG+ I+ + ++L EM T +P +G + + + + P +GF GW
Sbjct: 33 GGPAGLLIGYAIMGSIIYCVMQSL--GEMATFYPVVSGSFATYASRFVDPAFGFAVGWNY 90
Query: 110 WLSGVIDNALYPV---LFLDYLKSAIPALEGGFPRIVAVLLLTTALTYMNYRGLTIVG-- 164
WL +I L V + + Y + + + + + +N G+ G
Sbjct: 91 WLQWLIVLPLELVTASMTIQYWTDKVNP--AVW-----IAIFYVFIVIINLFGVKGYGEA 143
Query: 165 --WVAIVLGVFSLVPFALMGLIAIPRLKPWRWCMVDLKNVNWGLYLNTLFWNLNYWDS-- 220
W + + + +++ F ++ +I +N G N + YW
Sbjct: 144 EFWFSSI-KILAIIGFIILSII-----------------LNCGGGPNHGYIGFRYWHDPG 185
Query: 221 --------------ISTLV----------------GEVEDPGKTLPRA---------LFY 241
S V GE +P K++PRA +FY
Sbjct: 186 AFAGGTIGGRFKGVCSVFVTAAFSFGGTELVALTAGEAANPRKSIPRAAKRTFWRILVFY 245
Query: 242 ALILVVFAYFFP-----LLIGTGAAPVHRELW----SDGYFSVIAKLIGGVWLRTWIQGA 292
L L + + P LL + ++ + + V+ + V L + +
Sbjct: 246 ILTLFLIGFLVPYNDPRLLSSSSSSDSAASPFVIAIQNHGIKVLPHIFNAVILISVL--- 302
Query: 293 SAVSNMGMFIAEMSSDSFQLLGMAERGMLPEIFARRSQYGTPLVGILFSASGVILLSWLS 352
+ +N ++ + S L +A +G+ P+IFA + G P V ++ S+ L L+
Sbjct: 303 -SAANSSLYAS-----SRTLYALAHQGLAPKIFAYVDRRGVPYVAVIVSS----LFGLLA 352
Query: 353 FQEIV--AAENFLYCFAM-------IMEFIAFVKLRMQYPEAIR-------PYKVPLGTV 396
F + AE F + + I +R + + PYK G
Sbjct: 353 FLAVSKKEAEVFTWLLNISGLSGFFTWMCICLSHIRFRKAMKAQGRSLDELPYKSQTGPY 412
Query: 397 GAILLCIPPTLLIL 410
G+ L+++
Sbjct: 413 GSYYALFFNILILI 426
|
[Transport and binding proteins, Amino acids, peptides and amines]. Length = 478 |
| >gnl|CDD|236830 PRK11049, PRK11049, D-alanine/D-serine/glycine permease; Provisional | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 4e-05
Identities = 59/230 (25%), Positives = 100/230 (43%), Gaps = 40/230 (17%)
Query: 221 ISTLVGEVEDPGKTLPRALFYALILVVFAYFFPLLIGTGAAPVHRELWSD---------G 271
+ T E +DP K+LPRA+ I ++ Y F L++ P WS
Sbjct: 230 VGTTAAETKDPEKSLPRAINSIPIRIIMFYVFALIVIMSVTP-----WSSVVPDKSPFVE 284
Query: 272 YFSVI-----AKLIGGVWLRTWIQGASAVSNMGMFIAEMSSDSFQLLGMAERGMLPEIFA 326
F ++ A +I V L + A++ +N G+F S S L G+A+ G+ P+ FA
Sbjct: 285 LFVLVGLPAAASVINFVVLTS----AASSANSGVF-----STSRMLFGLAQEGVAPKAFA 335
Query: 327 RRSQYGTPLVGILFSA---SGVILLSWL------SFQEIVAAENFLYCFAMIMEFIAFVK 377
+ S+ P G+ FS G ++L ++ +F + L+ F + +++
Sbjct: 336 KLSKRAVPAKGLTFSCICLLGGVVLLYVNPSVIGAFTLVTTVSAILFMFVWTIILCSYLV 395
Query: 378 LRMQYPE--AIRPYKVPLGTVGAILLCIPPTLLILVVLALASPKVMAISV 425
R Q P YK+PLG + +C+ +LV+L L A+ V
Sbjct: 396 YRKQRPHLHEKSIYKMPLGKL-MCWVCMAFFAFVLVLLTLEDDTRQALIV 444
|
Length = 469 |
| >gnl|CDD|182566 PRK10580, proY, putative proline-specific permease; Provisional | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 1e-04
Identities = 51/198 (25%), Positives = 86/198 (43%), Gaps = 42/198 (21%)
Query: 221 ISTLVGEVEDPGKTLPRAL---------FYALILVVFAYFFPL-LIGTGAAPVHRELWSD 270
I GE +DP K++PRA+ FY L V +P +GT +P
Sbjct: 218 IGITAGEAKDPEKSIPRAINSVPMRILVFYVGTLFVIMSIYPWNQVGTNGSP-------- 269
Query: 271 GYFSVIAKLIGGVWLRTWIQGASAVSNMGMFIAEMS---SDSF----QLLGMAERGMLPE 323
F + + +G I A+++ N + A +S SD F L GMAE+G P+
Sbjct: 270 --FVLTFQHMG-------ITFAASILNFVVLTASLSAINSDVFGVGRMLHGMAEQGSAPK 320
Query: 324 IFARRSQYGTPLVGILFSASGVILLSWLS-------FQEIVAAENFLYCFAMIMEFIAFV 376
IF++ S+ G P V +L + ++ +L+ F I + F + IM ++ +
Sbjct: 321 IFSKTSRRGIPWVTVLVMTTALLFAVYLNYIMPENVFLVIASLATFATVWVWIMILLSQI 380
Query: 377 KLRMQY-PEAIRPYKVPL 393
R + PE ++ K +
Sbjct: 381 AFRRRLPPEEVKALKFKV 398
|
Length = 457 |
| >gnl|CDD|182458 PRK10435, cadB, lysine/cadaverine antiporter; Provisional | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 2e-04
Identities = 74/324 (22%), Positives = 125/324 (38%), Gaps = 50/324 (15%)
Query: 48 SVMAAGPLLALIGFLFFPFIWSIPEALITAEMGTMFPENGGYVVWVASALGPHWGFQQGW 107
S+ G ++++IG + +++ A + T P+ GG + + A + P +GFQ G
Sbjct: 37 SIAIWGWIISIIGAMSLAYVY--------ARLATKNPQQGGPIAY-AGEISPAFGFQTGV 87
Query: 108 MKWLSGVIDNALYPVLFLDYLKSAIPALEGGFPRIVAVLLLTTALTYMNYRG------LT 161
+ + + I N + + YL + P L P +A + + T++N G LT
Sbjct: 88 LYYHANWIGNLAIGITAVSYLSTFFPVLNDPIPAGIACIAIVWVFTFVNMLGGTWVSRLT 147
Query: 162 IVGWVAIVLGVFSLVPFALMGLIAIPRLKPWRWCMVDLKNVNWGLYLNT----------- 210
+G V +++ V V A++G W W NW T
Sbjct: 148 TIGLVLVLIPV---VGTAIVG---------WHWFDAATYAANWNTSDTTDGHAIIKSILL 195
Query: 211 LFWNLNYWDSISTLVGEVEDPGKTLPRALFYALILVVFAYFFPLLIGTGAAPVHRELWSD 270
W +S + G V++P +T+P A L Y + +G P S
Sbjct: 196 CLWAFVGVESAAVSTGMVKNPKRTVPLATMLGTGLAGIIYIAATQVISGMFPASVMAASG 255
Query: 271 GYFSVIAKLIGGVWLRTWIQGASAVSNMGMFIAEMSSDSFQLL-GMAER-----GMLPEI 324
F++ A I G W A VS F S S+ +L G A G P++
Sbjct: 256 APFAISASTILGNW------AAPLVSAFTAFACLTSLGSWMMLVGQAGVRAANDGNFPKV 309
Query: 325 FARRSQYGTPLVGILFSASGVILL 348
+ + G P G+L +A + L
Sbjct: 310 YGEVDKNGIPKKGLLLAAVKMTAL 333
|
Length = 435 |
| >gnl|CDD|163522 TIGR03810, arg_ornith_anti, arginine-ornithine antiporter | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 2e-04
Identities = 37/153 (24%), Positives = 60/153 (39%), Gaps = 5/153 (3%)
Query: 38 VSGGPFGV-EDSVMAAGPLLALIGFLFFPFIWSIPEALITAEMGTMFPE-NGGYVVWVAS 95
+ G F + D A LIG++ + + A + PE +GG + +
Sbjct: 17 IGSGIFSLPSDMAAGAAAGAVLIGWVI-TGVGMLALAFSFQNLANKKPELDGGVYSYAKA 75
Query: 96 ALGPHWGFQQGWMKWLSGVIDNALYPVLFLDYLKSAIPALEGG--FPRIVAVLLLTTALT 153
GP GF W WLS + N Y L L P GG P I+ +L +
Sbjct: 76 GFGPFMGFISAWGYWLSAWLGNVAYATLLFSTLGYFFPIFGGGNNPPSIIGASVLLWCVH 135
Query: 154 YMNYRGLTIVGWVAIVLGVFSLVPFALMGLIAI 186
++ RG+ ++ + + LVP + +I I
Sbjct: 136 FLVLRGVEGAAFINTITTIAKLVPLFVFIVIGI 168
|
Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2 [Transport and binding proteins, Amino acids, peptides and amines]. Length = 468 |
| >gnl|CDD|182297 PRK10197, PRK10197, gamma-aminobutyrate transporter; Provisional | Back alignment and domain information |
|---|
Score = 43.1 bits (101), Expect = 2e-04
Identities = 65/320 (20%), Positives = 128/320 (40%), Gaps = 23/320 (7%)
Query: 44 GVEDSVMAAGPLLALIGFLFFPFIWSIPEALITAEMGTMFPENGGYVVWVASALGPHWGF 103
G ++ AGP + L+ +LF + + ++ AEM P+ G + + A+G G+
Sbjct: 15 GSSVAIAEAGPAV-LLAYLFAGLLVVMIMRML-AEMAVATPDTGSFSTYADKAIGRWAGY 72
Query: 104 QQGWMKWLSGVIDNALYPVLFLDYLKSAIPALEGGFPRIVAVLLLTTALTYMNYRGLTIV 163
GW+ W V+ L + L S +P G P + L++T ALT N +
Sbjct: 73 TIGWLYWWFWVLVIPLEANIAAMILHSWVP----GIPIWLFSLVITLALTGSNLLSVKNY 128
Query: 164 G----WVAIVLGVFSLVPFALMGLIAIPRLKPWR--------WCMVDLKNVNWGLYLNTL 211
G W+A+ V +++ F +G +AI P+ W +G L+ +
Sbjct: 129 GEFEFWLALC-KVIAILAFIFLGAVAISGFYPYAEVSGISRLWDSGGFMPNGFGAVLSAM 187
Query: 212 FWNLNYW---DSISTLVGEVEDPGKTLPRALFYALILVVFAYFFPLLIGTGAAPVHRE-L 267
+ + + ++ E + P K + RA + + Y + + P + L
Sbjct: 188 LITMFSFMGAEIVTIAAAESDTPEKHIVRATNSVIWRISIFYLCSIFVVVALIPWNMPGL 247
Query: 268 WSDGYFSVIAKLIGGVWLRTWIQGASAVSNMGMFIAEMSSDSFQLLGMAERGMLPEIFAR 327
+ G + + +L+ + + +S + + + S L ++ RG P + +
Sbjct: 248 KAVGSYRSVLELLNIPHAKLIMDCVILLSVTSCLNSALYTASRMLYSLSRRGDAPAVMGK 307
Query: 328 RSQYGTPLVGILFSASGVIL 347
++ TP V +L S L
Sbjct: 308 INRSKTPYVAVLLSTGAAFL 327
|
Length = 446 |
| >gnl|CDD|236667 PRK10249, PRK10249, phenylalanine transporter; Provisional | Back alignment and domain information |
|---|
Score = 39.2 bits (91), Expect = 0.004
Identities = 89/410 (21%), Positives = 168/410 (40%), Gaps = 62/410 (15%)
Query: 14 DSSPKLERFQKVSVIPLVFLIFYEVSGGPFGVEDSVMAAGPLLALIGFLFFPFIWSIPEA 73
+ P L R I L+ L +G G+ ++ AGP + L+G+ + I
Sbjct: 14 NQEPTLHRGLHNRHIQLIALGGAIGTGLFLGIGPAIQMAGPAV-LLGY----GVAGIIAF 68
Query: 74 LITAEMGTMF---PENGGYVVWVASALGPHWGFQQGWMKWLSGVIDNALYPVLFLDYLKS 130
LI ++G M P +G + + GP GF GW W+ ++ ++ + L +
Sbjct: 69 LIMRQLGEMVVEEPVSGSFAHFAYKYWGPFAGFLSGWNYWV-------MFVLVGMAELTA 121
Query: 131 AIPALEGGFPRI------VAVLLLTTALTYMNYR--GLTIVGWVAI--VLGVFSLVPFAL 180
A ++ FP + A ++ A+ +N R G T W A+ VL + ++ F L
Sbjct: 122 AGIYMQYWFPDVPTWIWAAAFFIIINAVNLVNVRLYGETEF-WFALIKVLAIIGMIGFGL 180
Query: 181 MGLIA--------IPRLKPWRWCMVDLKNVNWG---LYLNTLFWNLNYWDSISTLVGEVE 229
L + I L W W L L + ++ + I E
Sbjct: 181 WLLFSGHGGEKASIDNL----WRYGGFFATGWNGLILSLAVIMFSFGGLELIGITAAEAR 236
Query: 230 DPGKTLPRA---------LFYALILVVFAYFFPLLIGTGAAPVHRELWSDGYFSVIAKLI 280
DP K++P+A LFY LVV +P + + ++ + +V+A +
Sbjct: 237 DPEKSIPKAVNQVVYRILLFYIGSLVVLLALYPWVEVKSNSSPFVMIFHNLDSNVVASAL 296
Query: 281 GGVWLRTWIQGASAVSNMGMFIAEMSSDSFQLLGMAERGMLPEIFARRSQYGTPLVGILF 340
V L V+++ ++ + + S+S L G++ +G P+ R S+ G P+ ++
Sbjct: 297 NFVIL---------VASLSVYNSGVYSNSRMLFGLSVQGNAPKFLTRVSRRGVPINSLML 347
Query: 341 SA---SGVILLSWLSFQEIVAAENFLYCFAMIMEFIAFVKLRMQYPEAIR 387
S S V+L+++L Q+ L +++ +I +++ A+R
Sbjct: 348 SGAITSLVVLINYLLPQKAFGLLMALVVATLLLNWIMICLAHLRFRAAMR 397
|
Length = 458 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 470 | |||
| PRK10655 | 438 | potE putrescine transporter; Provisional | 100.0 | |
| KOG1287 | 479 | consensus Amino acid transporters [Amino acid tran | 100.0 | |
| PRK15049 | 499 | L-asparagine permease; Provisional | 100.0 | |
| TIGR00908 | 442 | 2A0305 ethanolamine permease. The three genes used | 100.0 | |
| PRK10644 | 445 | arginine:agmatin antiporter; Provisional | 100.0 | |
| TIGR00906 | 557 | 2A0303 cationic amino acid transport permease. | 100.0 | |
| PRK11387 | 471 | S-methylmethionine transporter; Provisional | 100.0 | |
| PRK10249 | 458 | phenylalanine transporter; Provisional | 100.0 | |
| PRK11357 | 445 | frlA putative fructoselysine transporter; Provisio | 100.0 | |
| PRK10746 | 461 | putative transport protein YifK; Provisional | 100.0 | |
| TIGR00905 | 473 | 2A0302 transporter, basic amino acid/polyamine ant | 100.0 | |
| PRK10836 | 489 | lysine transporter; Provisional | 100.0 | |
| PRK10435 | 435 | cadB lysine/cadaverine antiporter; Provisional | 100.0 | |
| TIGR00911 | 501 | 2A0308 L-type amino acid transporter. | 100.0 | |
| PRK10238 | 456 | aromatic amino acid transporter; Provisional | 100.0 | |
| TIGR01773 | 452 | GABAperm gamma-aminobutyrate permease. GabP is hig | 100.0 | |
| TIGR00909 | 429 | 2A0306 amino acid transporter. | 100.0 | |
| PRK10580 | 457 | proY putative proline-specific permease; Provision | 100.0 | |
| PRK11049 | 469 | D-alanine/D-serine/glycine permease; Provisional | 100.0 | |
| TIGR00913 | 478 | 2A0310 amino acid permease (yeast). | 100.0 | |
| TIGR03810 | 468 | arg_ornith_anti arginine/ornithine antiporter. Mem | 100.0 | |
| PRK10197 | 446 | gamma-aminobutyrate transporter; Provisional | 100.0 | |
| COG0833 | 541 | LysP Amino acid transporters [Amino acid transport | 100.0 | |
| PRK11021 | 410 | putative transporter; Provisional | 100.0 | |
| COG1113 | 462 | AnsP Gamma-aminobutyrate permease and related perm | 100.0 | |
| TIGR03813 | 474 | put_Glu_GABA_T putative glutamate/gamma-aminobutyr | 100.0 | |
| TIGR00910 | 507 | 2A0307_GadC glutamate:gamma-aminobutyrate antiport | 100.0 | |
| TIGR00907 | 482 | 2A0304 amino acid permease (GABA permease). | 100.0 | |
| TIGR03428 | 475 | ureacarb_perm permease, urea carboxylase system. A | 100.0 | |
| KOG1289 | 550 | consensus Amino acid transporters [Amino acid tran | 100.0 | |
| TIGR00930 | 953 | 2a30 K-Cl cotransporter. | 100.0 | |
| COG0531 | 466 | PotE Amino acid transporters [Amino acid transport | 100.0 | |
| KOG1286 | 554 | consensus Amino acid transporters [Amino acid tran | 100.0 | |
| PF13520 | 426 | AA_permease_2: Amino acid permease; PDB: 3NCY_A 3G | 100.0 | |
| PRK15238 | 496 | inner membrane transporter YjeM; Provisional | 100.0 | |
| PF00324 | 478 | AA_permease: Amino acid permease; InterPro: IPR004 | 100.0 | |
| TIGR00837 | 381 | araaP aromatic amino acid transport protein. aroma | 99.97 | |
| TIGR00912 | 359 | 2A0309 spore germination protein (amino acid perme | 99.9 | |
| PF03222 | 394 | Trp_Tyr_perm: Tryptophan/tyrosine permease family; | 99.89 | |
| PRK10483 | 414 | tryptophan permease; Provisional | 99.89 | |
| KOG1288 | 945 | consensus Amino acid transporters [Amino acid tran | 99.89 | |
| TIGR00796 | 378 | livcs branched-chain amino acid uptake carrier. tr | 99.88 | |
| PRK09664 | 415 | tryptophan permease TnaB; Provisional | 99.88 | |
| KOG2082 | 1075 | consensus K+/Cl- cotransporter KCC1 and related tr | 99.88 | |
| PRK15132 | 403 | tyrosine transporter TyrP; Provisional | 99.87 | |
| PHA02764 | 399 | hypothetical protein; Provisional | 99.85 | |
| TIGR00814 | 397 | stp serine transporter. The HAAAP family includes | 99.83 | |
| COG0814 | 415 | SdaC Amino acid permeases [Amino acid transport an | 99.79 | |
| PRK13629 | 443 | threonine/serine transporter TdcC; Provisional | 99.79 | |
| KOG2083 | 643 | consensus Na+/K+ symporter [Inorganic ion transpor | 99.79 | |
| PF03845 | 320 | Spore_permease: Spore germination protein; InterPr | 99.56 | |
| KOG1303 | 437 | consensus Amino acid transporters [Amino acid tran | 99.34 | |
| KOG1304 | 449 | consensus Amino acid transporters [Amino acid tran | 99.3 | |
| PF01235 | 416 | Na_Ala_symp: Sodium:alanine symporter family; Inte | 99.23 | |
| COG3949 | 349 | Uncharacterized membrane protein [Function unknown | 99.16 | |
| TIGR00835 | 425 | agcS amino acid carrier protein. Members of the AG | 99.15 | |
| PLN03074 | 473 | auxin influx permease; Provisional | 99.14 | |
| PRK11375 | 484 | allantoin permease; Provisional | 99.13 | |
| COG1115 | 452 | AlsT Na+/alanine symporter [Amino acid transport a | 99.1 | |
| PTZ00206 | 467 | amino acid transporter; Provisional | 99.08 | |
| PRK11017 | 404 | codB cytosine permease; Provisional | 98.96 | |
| PF01490 | 409 | Aa_trans: Transmembrane amino acid transporter pro | 98.95 | |
| COG1457 | 442 | CodB Purine-cytosine permease and related proteins | 98.88 | |
| PF05525 | 427 | Branch_AA_trans: Branched-chain amino acid transpo | 98.68 | |
| TIGR00800 | 442 | ncs1 NCS1 nucleoside transporter family. The NCS1 | 98.62 | |
| TIGR02119 | 471 | panF sodium/pantothenate symporter. Pantothenate ( | 98.59 | |
| PRK15419 | 502 | proline:sodium symporter PutP; Provisional | 98.56 | |
| PRK09442 | 483 | panF sodium/panthothenate symporter; Provisional | 98.45 | |
| KOG1305 | 411 | consensus Amino acid transporter protein [Amino ac | 98.41 | |
| TIGR02121 | 487 | Na_Pro_sym sodium/proline symporter. This family c | 98.39 | |
| TIGR02358 | 386 | thia_cytX probable hydroxymethylpyrimidine transpo | 98.39 | |
| TIGR00813 | 407 | sss transporter, SSS family. have different number | 98.31 | |
| COG0591 | 493 | PutP Na+/proline symporter [Amino acid transport a | 98.22 | |
| COG1114 | 431 | BrnQ Branched-chain amino acid permeases [Amino ac | 98.15 | |
| PF01566 | 358 | Nramp: Natural resistance-associated macrophage pr | 98.1 | |
| PRK15433 | 439 | branched-chain amino acid transport system 2 carri | 98.1 | |
| PF02133 | 440 | Transp_cyt_pur: Permease for cytosine/purines, ura | 98.08 | |
| PF00474 | 406 | SSF: Sodium:solute symporter family; InterPro: IPR | 98.08 | |
| COG1914 | 416 | MntH Mn2+ and Fe2+ transporters of the NRAMP famil | 97.97 | |
| COG0733 | 439 | Na+-dependent transporters of the SNF family [Gene | 97.94 | |
| PRK12488 | 549 | acetate permease; Provisional | 97.85 | |
| PRK00701 | 439 | manganese transport protein MntH; Reviewed | 97.78 | |
| PF02705 | 534 | K_trans: K+ potassium transporter; InterPro: IPR00 | 97.77 | |
| PRK09395 | 551 | actP acetate permease; Provisional | 97.7 | |
| COG1953 | 497 | FUI1 Cytosine/uracil/thiamine/allantoin permeases | 97.6 | |
| TIGR02711 | 549 | symport_actP cation/acetate symporter ActP. Member | 97.5 | |
| TIGR00794 | 688 | kup potassium uptake protein. Proteins of the KUP | 97.25 | |
| TIGR03648 | 552 | Na_symport_lg probable sodium:solute symporter, VC | 97.11 | |
| PRK10484 | 523 | putative transporter; Provisional | 96.98 | |
| PLN00149 | 779 | potassium transporter; Provisional | 96.79 | |
| PRK10745 | 622 | trkD potassium transport protein Kup; Provisional | 96.6 | |
| COG4147 | 529 | DhlC Predicted symporter [General function predict | 96.6 | |
| PF02028 | 485 | BCCT: BCCT family transporter; InterPro: IPR000060 | 96.56 | |
| PLN00148 | 785 | potassium transporter; Provisional | 96.53 | |
| PLN00150 | 779 | potassium ion transporter family protein; Provisio | 96.2 | |
| PLN00151 | 852 | potassium transporter; Provisional | 96.12 | |
| PRK09950 | 506 | putative transporter; Provisional | 96.09 | |
| KOG2466 | 572 | consensus Uridine permease/thiamine transporter/al | 94.6 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 94.55 | |
| PF00209 | 523 | SNF: Sodium:neurotransmitter symporter family; Int | 93.57 | |
| PRK09928 | 679 | choline transport protein BetT; Provisional | 93.39 | |
| COG3158 | 627 | Kup K+ transporter [Inorganic ion transport and me | 93.34 | |
| KOG4303 | 524 | consensus Vesicular inhibitory amino acid transpor | 92.76 | |
| PRK03356 | 504 | L-carnitine/gamma-butyrobetaine antiporter; Provis | 92.2 | |
| TIGR00842 | 453 | bcct choline/carnitine/betaine transport. properti | 91.8 | |
| COG4858 | 226 | Uncharacterized membrane-bound protein conserved i | 91.64 | |
| COG1292 | 537 | BetT Choline-glycine betaine transporter [Cell env | 91.6 | |
| COG4145 | 473 | PanF Na+/panthothenate symporter [Coenzyme metabol | 91.0 | |
| PF12794 | 340 | MscS_TM: Mechanosensitive ion channel inner membra | 90.49 | |
| KOG3659 | 629 | consensus Sodium-neurotransmitter symporter [Signa | 84.63 | |
| PF02554 | 376 | CstA: Carbon starvation protein CstA; InterPro: IP | 84.32 | |
| PRK15049 | 499 | L-asparagine permease; Provisional | 80.42 | |
| PF06570 | 206 | DUF1129: Protein of unknown function (DUF1129); In | 80.16 |
| >PRK10655 potE putrescine transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-56 Score=447.12 Aligned_cols=418 Identities=17% Similarity=0.202 Sum_probs=342.5
Q ss_pred ccccccchhhHHHhHhhhhcc-cccchhhHHhhhChHHHHHHHHHHHHHHHHHHHHHHHHhhccCccCCchhHhHHHhhC
Q 012131 20 ERFQKVSVIPLVFLIFYEVSG-GPFGVEDSVMAAGPLLALIGFLFFPFIWSIPEALITAEMGTMFPENGGYVVWVASALG 98 (470)
Q Consensus 20 ~~~r~l~~~~~~~~~~~~v~g-g~~~~~~~~~~~g~~~~~~~~ii~~~~~~~~~al~~~el~~~~p~~GG~y~~~~~~~g 98 (470)
++||+++++++.++++|+++| |++..|..+..+||. .+++|++++++ .++.+++|+|+++++|++||.|.|+++.+|
T Consensus 3 ~~~~~l~~~~~~~l~vg~~iGsGif~~p~~~~~~G~~-~~~~w~i~~~~-~~~~a~~~aeL~~~~P~~GG~y~y~~~~~G 80 (438)
T PRK10655 3 AKSNKMGVVQLTILTAVNMMGSGIIMLPTKLAQVGTI-SILSWLVTAVG-SMALAYAFAKCGMFSRKSGGMGGYAEYAFG 80 (438)
T ss_pred CccCcccHHHHHHHHHHhhhhhHHHHhHHHHHHhhHH-HHHHHHHHHHH-HHHHHHHHHHHhhhCCCCCchHHHHHHHcC
Confidence 368899999999999999999 888888777778884 67899999996 888999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 012131 99 PHWGFQQGWMKWLSGVIDNALYPVLFLDYLKSAIPALEGGFPRIVAVLLLTTALTYMNYRGLTIVGWVAIVLGVFSLVPF 178 (470)
Q Consensus 99 ~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~i~~~~~i~~~ 178 (470)
|..||+.||.+++.+.....+.+..+.+|+..+++...++++..++.++++++...+|++|+|..+++|.+....+++.+
T Consensus 81 ~~~gf~~gw~~~~~~~~~~~~~a~~~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~ln~~g~~~~~~i~~i~~~~~l~~l 160 (438)
T PRK10655 81 KSGNFMANYTYGVSLLIANVAIAISAVGYGTELFGATLSPVQICLATIGVLWLCTVANFGGARITGQISSVTVWGVIIPV 160 (438)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988777777777889888887544456667777788889999999999999999999888887777
Q ss_pred HHHHHHHhhccCCCccccc-ccccc----chHHHHHHHHhhhhhHHHhhhhhccccCCCCchhHHHHHHHHHHHHHHHHH
Q 012131 179 ALMGLIAIPRLKPWRWCMV-DLKNV----NWGLYLNTLFWNLNYWDSISTLVGEVEDPGKTLPRALFYALILVVFAYFFP 253 (470)
Q Consensus 179 ~~~~i~~~~~~~~~~~~~~-~~~~~----~~~~~~~~~~~~~~G~e~~~~~~~E~k~P~k~ip~ai~~~~~~~~~~y~l~ 253 (470)
+++.+.+....+++++.+. ++... ++...+...+|+|.|+|.+++++||+|||+||+||+++.+..++.++|++.
T Consensus 161 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~r~iPrAi~~~~~~~~~~Y~l~ 240 (438)
T PRK10655 161 VGLSIIGWFWFSPSLYVAAWNPHHLPFFSAVGSSIAMTLWAFLGLESACANSDAVENPERNVPIAVLGGTLGAAVIYIVS 240 (438)
T ss_pred HHHHHHHHHHhCcccccCCcCccCCchHHHHHHHHHHHHHHHhhhhhhhhhHHHhhCccccccHHHHHHHHHHHHHHHHH
Confidence 7666655544444443221 11111 222233445799999999999999999999999999999999999999999
Q ss_pred HHHHHhccCCCcccccccHHHHHHHHhcchhHHHHHHHHHHHHhHHHHHHHhhhhhHHHHhhhhcCCCchhhhhcCCCCC
Q 012131 254 LLIGTGAAPVHRELWSDGYFSVIAKLIGGVWLRTWIQGASAVSNMGMFIAEMSSDSFQLLGMAERGMLPEIFARRSQYGT 333 (470)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~~~~~~~r~~~ 333 (470)
.....+..|.++...+++|..+..++..+++...++.+..+++.+++.++++.+.+|.+++++|||.+|++|+|+||+++
T Consensus 241 ~~~~~~~~~~~~l~~~~~p~~~~~~~~~g~~~~~~~~~~~~is~~~~~~~~~~~~sR~~~~~a~dg~lP~~~~~v~~~~t 320 (438)
T PRK10655 241 TNVIAGIVPNMELANSTAPFGLAFAQMFNPTVGKIVMALMVMSCCGSLLGWQFTIAQVFKSSADEGYFPKIFSRVTKVDA 320 (438)
T ss_pred HHHHHhCCCHHHHhhccchHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHhhCcCCC
Confidence 98888888888776677898888888888888888888888999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHHHHH--------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCcccCCchhhHHHhhhhh
Q 012131 334 PLVGILFSASGVILLSWL--------SFQEIVAAENFLYCFAMIMEFIAFVKLRMQYPEAIRPYKVPLGTVGAILLCIPP 405 (470)
Q Consensus 334 P~~ai~~~~~~~~~~~~~--------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (470)
|++|+++..+++.++.+. .++.+.++.++...+.|.+..++++++|||+|+.+||||.+. +...+.
T Consensus 321 P~~all~~~~i~~~l~l~~~~~~~~~~~~~l~~~~~~~~~i~y~~~~~~~~~lr~~~~~~~~~~~~~~------~~~~~~ 394 (438)
T PRK10655 321 PVQGMLIIVVIQSLLSLMTISPSLNSQFNVLVNLAVVTNIIPYILSMAALVIIQKVANVPPSKAKVAN------FIAFVG 394 (438)
T ss_pred CHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcchhHHHH------HHHHHH
Confidence 999999998887654432 367789999999999999999999999999888888888642 122333
Q ss_pred HHHHHHHHHhccchHHHHHHHHHHHhhhhHHHHHHHhhcc
Q 012131 406 TLLILVVLALASPKVMAISVIAVLIGFFIQPCMTYAEKRQ 445 (470)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 445 (470)
.+++.+..+..+.+....+..++++|.++|.+++|++++|
T Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~~~~~~~~~ 434 (438)
T PRK10655 395 ALYSFYALYSSGEEAMLYGSIVTFLGWTLYGLISPRFELK 434 (438)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 3343444444445556778888889999987766555443
|
|
| >KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-57 Score=435.97 Aligned_cols=421 Identities=25% Similarity=0.301 Sum_probs=359.6
Q ss_pred cccccccchhhHHHhHhhhhcc-cccchhhHHhh-hChHHHHHHHHHHHHHHHHHHHHHHHHhhccCccCCchhHhHHHh
Q 012131 19 LERFQKVSVIPLVFLIFYEVSG-GPFGVEDSVMA-AGPLLALIGFLFFPFIWSIPEALITAEMGTMFPENGGYVVWVASA 96 (470)
Q Consensus 19 ~~~~r~l~~~~~~~~~~~~v~g-g~~~~~~~~~~-~g~~~~~~~~ii~~~~~~~~~al~~~el~~~~p~~GG~y~~~~~~ 96 (470)
.+++||++++.++++.+++++| |+|..|..+-. +|+.+..+..++.+.+++++.|+||+||++++|++||+|.|..++
T Consensus 8 ~~~~kkigll~~v~livg~iIGsGIFvsp~~Vl~~~gsvg~sL~iWv~~gi~s~~galcyaELGT~ipksGgd~ayi~~a 87 (479)
T KOG1287|consen 8 VQLKKKIGLLSGVSLIVGNIIGSGIFVSPKGVLANTGSVGLSLIIWVFCGIISIIGALCYAELGTSIPKSGGDYAYISEA 87 (479)
T ss_pred ccccceeeeecceeEEEEeeEecccccCcHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHhccccCCCcchhhHHHH
Confidence 3478999999999999999877 99999887655 667665555555554469999999999999999999999999999
Q ss_pred hCChHHHHHHHHHHHH-HhhhHHHHHHHHHHH-HHHhccccCC-chHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 012131 97 LGPHWGFQQGWMKWLS-GVIDNALYPVLFLDY-LKSAIPALEG-GFPRIVAVLLLTTALTYMNYRGLTIVGWVAIVLGVF 173 (470)
Q Consensus 97 ~g~~~g~~~g~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~i~~~~ 173 (470)
+||.+||...|.-++. .....+..+..+++| ++.++|.... .....+++.++++++..+|..++|+..++|.+++..
T Consensus 88 fg~~~aF~~~wvs~l~~~p~~~Ai~altF~~Y~l~p~fp~c~~p~~~~~lla~~~l~~lt~~n~~~V~~a~~vq~~ft~~ 167 (479)
T KOG1287|consen 88 FGPFPAFLFLWVSLLIIVPTSAAIIALTFATYLLKPFFPLCDVPRVASKLLAAALLVLLTLINSFSVKWATRVQIVFTIA 167 (479)
T ss_pred hccchhHHHHHHHHHHHhhhHHHHHHHHHHHHhhcccCCCCCCchHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 9999999999987775 555568999999999 7888884322 356678888999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhh---ccCCCccccc-----cccccchHHHHHHHHhhhhhHHHhhhhhccccCCCCchhHHHHHHHHH
Q 012131 174 SLVPFALMGLIAIP---RLKPWRWCMV-----DLKNVNWGLYLNTLFWNLNYWDSISTLVGEVEDPGKTLPRALFYALIL 245 (470)
Q Consensus 174 ~i~~~~~~~i~~~~---~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~P~k~ip~ai~~~~~~ 245 (470)
+++.+.++++.++. ..+.+++... +.+...+...+...+|+|.|||.....+||+|||+||+|||+.+|+.+
T Consensus 168 Kl~al~lIii~G~~~~~~g~~~~~~~~~f~g~~~~~g~i~lafysglfa~~GWd~lN~vteEiknP~ktLP~Ai~isi~l 247 (479)
T KOG1287|consen 168 KLLALLLIIITGLYLLFWGSTQNFENSEFEGSDTDVGNIALAFYSGLFAFSGWDYLNYVTEEIKNPRRTLPRAILISIPL 247 (479)
T ss_pred HHHHHHHHHHhchheeEecccccccccccccCcCchHHHHHHHHHhhhcccCchhhccchHhhcCccccchHHHHHhhHH
Confidence 99988888877653 3344443322 222334667777789999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccCCCcccccccHHHHHHHHhcchhHHHHHHHHHHHHhHHHHHHHhhhhhHHHHhhhhcCCCchhh
Q 012131 246 VVFAYFFPLLIGTGAAPVHRELWSDGYFSVIAKLIGGVWLRTWIQGASAVSNMGMFIAEMSSDSFQLLGMAERGMLPEIF 325 (470)
Q Consensus 246 ~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~~~ 325 (470)
+++.|++++++...+++.++...++....+.++...|.+. +++.+.+.++.+++.|+.+.+.||.++++||+|+||+.|
T Consensus 248 vt~iYil~NvAy~~vls~~e~l~S~aVav~Fa~~~~G~~~-~~ip~~ValS~~G~~n~~ifs~SR~~~~~areG~LP~~~ 326 (479)
T KOG1287|consen 248 VTVIYVLVNVAYFTVLSPDEILSSDAVAVTFADRILGVFA-WAIPFSVALSLIGSLNSVIFSSSRLFYAGAREGHLPAFF 326 (479)
T ss_pred HHHHHHHhHhheeEecCHHHhcccchHHHHHHHHhccchH-HHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHccCccHHH
Confidence 9999999999999999999998888888887888887776 999999999999999999999999999999999999999
Q ss_pred hhcC-CCCCChHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCcccCCchhhHHHhhh
Q 012131 326 ARRS-QYGTPLVGILFSASGVILLSWL-SFQEIVAAENFLYCFAMIMEFIAFVKLRMQYPEAIRPYKVPLGTVGAILLCI 403 (470)
Q Consensus 326 ~~~~-r~~~P~~ai~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (470)
++.| |+.+|..|+++.+..++++.+. +++.+++..++...+.+.+..++++++|+|+|+.+||+|.|...++....+
T Consensus 327 s~i~~~~~TP~~allf~~~~~i~~~~~~d~~~LIny~sf~~~l~~~l~~~gll~lR~k~p~~~rPiKvpl~~p~~~~~~- 405 (479)
T KOG1287|consen 327 SMISVRRFTPRPALLFSGLLSIVLSLIGDFDQLINYVSFAYWLFRGLSMAGLLWLRWKHPPLPRPIKVPLFIPILFLLI- 405 (479)
T ss_pred HhhcCCCCCChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCEeeeeehHHHHHHH-
Confidence 9999 6679999999999999998888 599999999999999999999999999999999999999999877665443
Q ss_pred hhHHHHHHHHHhcc-chHHHHHHHHHHHhhhhHHHHHHHhh
Q 012131 404 PPTLLILVVLALAS-PKVMAISVIAVLIGFFIQPCMTYAEK 443 (470)
Q Consensus 404 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~ 443 (470)
.++++......+ +....+++.+++.|+..|....++++
T Consensus 406 --~i~lvvip~~~~~~~~~~ig~~i~l~G~~~Y~~~i~~~~ 444 (479)
T KOG1287|consen 406 --CIFLVVIPIISDFPVETLIGIGIILSGVPFYFLFIHWKK 444 (479)
T ss_pred --HHHHhheeeeecCCccchhHHHHHHHhhhhheEEEEecC
Confidence 445555555555 34488899999999999987665544
|
|
| >PRK15049 L-asparagine permease; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-55 Score=444.00 Aligned_cols=391 Identities=16% Similarity=0.205 Sum_probs=316.4
Q ss_pred ccccccchhhHHHhHhhhhcc-cccchh-hHHhhhChHHHHHHHHHHHHHHHHHHHHHHHHhhccCccCCchhHhHHHhh
Q 012131 20 ERFQKVSVIPLVFLIFYEVSG-GPFGVE-DSVMAAGPLLALIGFLFFPFIWSIPEALITAEMGTMFPENGGYVVWVASAL 97 (470)
Q Consensus 20 ~~~r~l~~~~~~~~~~~~v~g-g~~~~~-~~~~~~g~~~~~~~~ii~~~~~~~~~al~~~el~~~~p~~GG~y~~~~~~~ 97 (470)
++||+++.+++.++++|.++| |+|..+ ..+..+||. .+++|++++++ .++.+++++||++++|++||.|+|+++.+
T Consensus 25 ~l~r~L~~~~~~~i~~G~~IGsGiF~~~g~~~~~aGp~-~il~~li~~i~-~~~v~~slaELas~~P~aGg~y~y~~~~~ 102 (499)
T PRK15049 25 GYHKAMGNRQVQMIAIGGAIGTGLFLGAGARLQMAGPA-LALVYLICGLF-SFFILRALGELVLHRPSSGSFVSYAREFL 102 (499)
T ss_pred hhhccCCHhHhHHHhhhccccchHHHhhHHHHHhcCCH-HHHHHHHHHHH-HHHHHHHHHHHHHhCCCCCCHHHHHHHHh
Confidence 478999999999999999989 887765 466678995 67899999986 88889999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 012131 98 GPHWGFQQGWMKWLSGVIDNALYPVLFLDYLKSAIPALEGGFPRIVAVLLLTTALTYMNYRGLTIVGWVAIVLGVFSLVP 177 (470)
Q Consensus 98 g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~i~~~~~i~~ 177 (470)
||.+||++||.+|+.|....+......+.+...+ +.+. ..+.+..+.++++++..+|++|+|.+++++.++..++++.
T Consensus 103 G~~~gf~~GW~~~l~~~~~~~~~~~a~~~~~~~~-~~~~-~~~~~~~~~~~~~l~~~iN~~gvk~~~~i~~~~~~iki~~ 180 (499)
T PRK15049 103 GEKAAYVAGWMYFINWAMTGIVDITAVALYMHYW-GAFG-GVPQWVFALAALTIVGTMNMIGVKWFAEMEFWFALIKVLA 180 (499)
T ss_pred CcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999877766666666676543 2221 2355667778888999999999999999999999888776
Q ss_pred HHHHHHHHh---hccCCC-----ccccc----cccccchHHHHH---HHHhhhhhHHHhhhhhccccCCCCchhHHHHHH
Q 012131 178 FALMGLIAI---PRLKPW-----RWCMV----DLKNVNWGLYLN---TLFWNLNYWDSISTLVGEVEDPGKTLPRALFYA 242 (470)
Q Consensus 178 ~~~~~i~~~---~~~~~~-----~~~~~----~~~~~~~~~~~~---~~~~~~~G~e~~~~~~~E~k~P~k~ip~ai~~~ 242 (470)
++++++.++ ...++. .+... +..+.++.+.+. ..+|+|.|+|.+++++||+|||+|++|||+..+
T Consensus 181 l~~~ii~~i~~~~~~~~~~~~~~~f~~~~~~~~~~p~g~~~~~~~~~~~~faf~G~e~i~~~aeE~knP~r~iPrAi~~~ 260 (499)
T PRK15049 181 IVTFLVVGTVFLGSGQPLDGNTTGFHLITDNGGFFPHGLLPALVLIQGVVFAFASIEMVGTAAGECKDPQTMVPKAINSV 260 (499)
T ss_pred HHHHHHHHHHHHhCCCCCCCCCcccccccCCCCcccccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcChhhHHHHHHHHH
Confidence 666554432 221111 11111 111334444333 357999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhccCCCcccccccHHHHHHHHhcchhHHHHHHHHHHHHhHHHHHHHhhhhhHHHHhhhhcCCCc
Q 012131 243 LILVVFAYFFPLLIGTGAAPVHRELWSDGYFSVIAKLIGGVWLRTWIQGASAVSNMGMFIAEMSSDSFQLLGMAERGMLP 322 (470)
Q Consensus 243 ~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP 322 (470)
+..+.++|++.........|.++....++|+.++++..+.++...++.+.++++.+++.++.+++.||++|+|||||.+|
T Consensus 261 ~~~i~~~yi~~~~~~~~~~p~~~~~~~~sP~~~~~~~~g~~~~~~ii~~~ilia~~ss~ns~~~~~sR~l~a~Ardg~lP 340 (499)
T PRK15049 261 IWRIGLFYVGSVVLLVMLLPWSAYQAGQSPFVTFFSKLGVPYIGSIMNIVVLTAALSSLNSGLYCTGRILRSMAMGGSAP 340 (499)
T ss_pred HHHHHHHHHHHHHHHheecchhccCcCCCHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcC
Confidence 99999999999999999999988877788999998888889888999999999999999999999999999999999999
Q ss_pred hhhhhcCCCCCChHHHHHHHHHHHHHHHH-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC---CCCCcccC
Q 012131 323 EIFARRSQYGTPLVGILFSASGVILLSWL-------SFQEIVAAENFLYCFAMIMEFIAFVKLRMQYPE---AIRPYKVP 392 (470)
Q Consensus 323 ~~~~~~~r~~~P~~ai~~~~~~~~~~~~~-------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 392 (470)
++|+|+||+++|++|++++.+++++..+. .++.+.++.++...+.|.+.+++++++||+.++ .++|||.|
T Consensus 341 ~~f~kv~k~~~P~~Ail~~~~i~~l~~~l~~~~~~~~f~~l~~~~~~~~li~y~~~~~~~l~~R~~~~~~~~~~~pf~~~ 420 (499)
T PRK15049 341 SFMAKMSRQHVPYAGILATLVVYVVGVFLNYLVPSRVFEIVLNFASLGIIASWAFIIVCQMRLRKAIKEGKAADVSFKLP 420 (499)
T ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccc
Confidence 99999999999999999988876543222 277899999999999999999999999887443 35799999
Q ss_pred CchhhHHHhhhhhHHHHHHHHHh
Q 012131 393 LGTVGAILLCIPPTLLILVVLAL 415 (470)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~ 415 (470)
.+ +...+.+++..+++......
T Consensus 421 ~~-p~~~~~~l~~~~~~~~~~~~ 442 (499)
T PRK15049 421 GA-PFTSWLTLLFLLSVLVLMAF 442 (499)
T ss_pred Cc-cHHHHHHHHHHHHHHHHHHH
Confidence 87 44444444444444443333
|
|
| >TIGR00908 2A0305 ethanolamine permease | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-55 Score=438.31 Aligned_cols=420 Identities=17% Similarity=0.212 Sum_probs=333.9
Q ss_pred ccccccccchhhHHHhHhhhhcccccc-hhhHHhhhChHHHHHHHHHHHHHHHHHHHHHHHHhhccCccCCchhHhHHHh
Q 012131 18 KLERFQKVSVIPLVFLIFYEVSGGPFG-VEDSVMAAGPLLALIGFLFFPFIWSIPEALITAEMGTMFPENGGYVVWVASA 96 (470)
Q Consensus 18 ~~~~~r~l~~~~~~~~~~~~v~gg~~~-~~~~~~~~g~~~~~~~~ii~~~~~~~~~al~~~el~~~~p~~GG~y~~~~~~ 96 (470)
++++||+++.++..+++++.++||.+. .+..+..+||...++++++++++ .++.+++|+|+++++|++||.|.|+++.
T Consensus 2 ~~~l~r~l~~~~~~~l~~~~~igg~~~~~~~~~~~~G~~~~~~~~~i~~~~-~~~~a~~~aEl~s~~P~~Gg~y~~~~~~ 80 (442)
T TIGR00908 2 HRQLKKTLATWQLWGIGVGYVISGDYAGWNFGLAQGGWGGFVVATLLVATM-YLTFCFSLAELSTMIPTAGGGYGFARRA 80 (442)
T ss_pred CchhhccCCHHHHHHhHHHHHhhccchhHhhHHHHhCcHHHHHHHHHHHHH-HHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 345899999999999999998876544 46677778998788999888885 8888999999999999999999999999
Q ss_pred hCChHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 012131 97 LGPHWGFQQGWMKWLSGVIDNALYPVLFLDYLKSAIPALEGGFPRIVAVLLLTTALTYMNYRGLTIVGWVAIVLGVFSLV 176 (470)
Q Consensus 97 ~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~i~~~~~i~ 176 (470)
+||.+||++||.+++.+....+.++..+++|+..++|.. +.+....++++++..+|++|+|..++++.+...++++
T Consensus 81 ~G~~~gf~~gw~~~~~~~~~~~~~a~~~~~~l~~~~p~~----~~~~~~~~~~~~~~~ln~~g~~~~~~i~~~~~~~~~~ 156 (442)
T TIGR00908 81 FGPWGGFLAGTAILIEFAFAPPAIACFIGAYCESLFPVG----PGWLAALVFYIVFIGINILGVGEAAKLEFVVTAVAII 156 (442)
T ss_pred hCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC----chhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 999999999999999999999999999999999888753 3345666777888999999999999999998888777
Q ss_pred HHHHHHHHHhhccCCCccccc------cccccchHHHHH---HHHhhhhhHHHhhhhhccccCCCCchhHHHHHHHHHHH
Q 012131 177 PFALMGLIAIPRLKPWRWCMV------DLKNVNWGLYLN---TLFWNLNYWDSISTLVGEVEDPGKTLPRALFYALILVV 247 (470)
Q Consensus 177 ~~~~~~i~~~~~~~~~~~~~~------~~~~~~~~~~~~---~~~~~~~G~e~~~~~~~E~k~P~k~ip~ai~~~~~~~~ 247 (470)
.++++......+.++.++.+. ...+.++.+.+. ..+|+|.|+|.+++++||+|||+||+||+++.+..++.
T Consensus 157 ~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~aeE~k~P~r~iprai~~s~~~~~ 236 (442)
T TIGR00908 157 ALGVFIGAMVPHFDSANLFNGPQTGASSFLPGAYVGVFAAIPFAIWFFLAVEGVAMAAEETKNPKRDIPRGLIGAILTLL 236 (442)
T ss_pred HHHHHHHHHhccCCHHHhccCCccCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHH
Confidence 665554444333333332111 111223433333 34799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccCCCcccccccHHHHHHHHhcc--hhHHHHHHHHHHHHhHHHHHHHhhhhhHHHHhhhhcCCCchhh
Q 012131 248 FAYFFPLLIGTGAAPVHRELWSDGYFSVIAKLIGG--VWLRTWIQGASAVSNMGMFIAEMSSDSFQLLGMAERGMLPEIF 325 (470)
Q Consensus 248 ~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~~~ 325 (470)
++|+....+..+..+.+++..+++|+.+..++..+ .+...++.+..+++.+++.++.+.+.+|.+++|||||.+|++|
T Consensus 237 ~~~~~~~~~~~g~~~~~~l~~~~~p~~~~~~~~~g~~~~~~~~i~~~~~~~~~~s~~~~~~~~sR~l~a~ardg~lP~~~ 316 (442)
T TIGR00908 237 ALAAGILVVGPGAADAKELMGSNNPLPEALESIYGGSTWMSQFVNLVGLFGLIASFHGIIYGYSRQIFALSRAGYLPESL 316 (442)
T ss_pred HHHHHHHHHHhcCCCHHHhCCCcchHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHH
Confidence 99998887777777777776667788888877643 3455666677778888999999999999999999999999999
Q ss_pred hhcCCCCCChHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCcccCCchhhHHHhhhh
Q 012131 326 ARRSQYGTPLVGILFSASGVILLSWL-SFQEIVAAENFLYCFAMIMEFIAFVKLRMQYPEAIRPYKVPLGTVGAILLCIP 404 (470)
Q Consensus 326 ~~~~r~~~P~~ai~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (470)
+|+||+++|++|+++..++++++.+. +.+.+.++.++...+.|.+..++++++|+|+|+.+||||.|.+.... +.+++
T Consensus 317 ~~~~~~~~P~~Ail~~~~i~~~~~l~~~~~~l~~~~~~~~~~~y~~~~~a~i~lr~~~p~~~rp~~~p~~~~~~-~l~~~ 395 (442)
T TIGR00908 317 SKVNRKKAPVLAIVVPGVIGFGLSLTGQTALIILVSVFGAIISYVLSMAAHFTLRIRRPDMERPYRTPGGILTP-GVALV 395 (442)
T ss_pred HHhCCCCCcHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccCCCcchHH-HHHHH
Confidence 99999999999999999988766554 45667788888899999999999999999999999999999874433 33444
Q ss_pred hHHHHHHHHHhccchHHHHHHHHHHHhhhhHHHHHHHhh
Q 012131 405 PTLLILVVLALASPKVMAISVIAVLIGFFIQPCMTYAEK 443 (470)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 443 (470)
..++++......++........+++++.++|..++|+++
T Consensus 396 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 434 (442)
T TIGR00908 396 LACVALVTGFYVDPRVVVGAVAIFVVLIGYYFLYSRHHL 434 (442)
T ss_pred HHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHhhhhchh
Confidence 445555545455554444455666666666666544443
|
The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily. |
| >PRK10644 arginine:agmatin antiporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-55 Score=438.18 Aligned_cols=416 Identities=18% Similarity=0.268 Sum_probs=337.0
Q ss_pred ccccccchhhHHHhHhhhhcc-cccchhhHHhhhChHHHHHHHHHHHHHHHHHHHHHHHHhhccCccCCchhHhHHHhhC
Q 012131 20 ERFQKVSVIPLVFLIFYEVSG-GPFGVEDSVMAAGPLLALIGFLFFPFIWSIPEALITAEMGTMFPENGGYVVWVASALG 98 (470)
Q Consensus 20 ~~~r~l~~~~~~~~~~~~v~g-g~~~~~~~~~~~g~~~~~~~~ii~~~~~~~~~al~~~el~~~~p~~GG~y~~~~~~~g 98 (470)
+++|++++++++++.+|.++| |++..+..+...|+ ..+++|+++++. .++.+++|+||++++|++||.|.|+++.+|
T Consensus 5 ~~~~~lg~~~~~~l~vg~~iGsGif~~~~~~a~~g~-~~~~~~~i~~~~-~l~~al~~aEL~s~~P~aGG~y~~~~~~~g 82 (445)
T PRK10644 5 ADAHKVGLIPVTLMVAGNIMGSGVFLLPANLASTGG-IAIYGWLVTIIG-ALGLSMVYAKMSSLDPSPGGSYAYARRCFG 82 (445)
T ss_pred ccCCCcCHHHHHHHHHhhHhhhHHHhhHHHHHHHHH-HHHHHHHHHHHH-HHHHHHHHHHHHhhCCCCCChhHHHHHHcC
Confidence 478999999999999999999 89988887777666 467999999886 889999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 012131 99 PHWGFQQGWMKWLSGVIDNALYPVLFLDYLKSAIPALEGGFPRIVAVLLLTTALTYMNYRGLTIVGWVAIVLGVFSLVPF 178 (470)
Q Consensus 99 ~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~i~~~~~i~~~ 178 (470)
|.+||++||.+|+.+.....+.......|...++|...+++...+..+++++++..+|.+|+|..+++|++....+++.+
T Consensus 83 ~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ln~~gvk~~~~i~~i~~~~~~i~l 162 (445)
T PRK10644 83 PFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPILKDPLVLTITCVVVLWIFVLLNIVGPKMITRVQAVATVLALIPI 162 (445)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHH
Confidence 99999999999998877777776667778887777554455556677778889999999999999999999999888777
Q ss_pred HHHHHHHhhccCCCccccc-c-ccccchHH---HHHHHHhhhhhHHHhhhhhccccCCCCchhHHHHHHHHHHHHHHHHH
Q 012131 179 ALMGLIAIPRLKPWRWCMV-D-LKNVNWGL---YLNTLFWNLNYWDSISTLVGEVEDPGKTLPRALFYALILVVFAYFFP 253 (470)
Q Consensus 179 ~~~~i~~~~~~~~~~~~~~-~-~~~~~~~~---~~~~~~~~~~G~e~~~~~~~E~k~P~k~ip~ai~~~~~~~~~~y~l~ 253 (470)
+++.+.++...+.+++.+. + .+..++.. .+...+|+|.|+|.+++++||+|||+|++||+++.+..++.++|++.
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~aeE~k~P~r~iPrai~~s~~i~~v~Y~l~ 242 (445)
T PRK10644 163 VGIAVFGWFWFRGETYMAAWNVSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPIATIGGVLIAAVCYVLS 242 (445)
T ss_pred HHHHHHHHHHhCchhccCCccccccchHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCcccchhHHHHHHHHHHHHHHHHH
Confidence 7666655443333222111 1 11122333 33445799999999999999999999999999999999999999999
Q ss_pred HHHHHhccCCCcccccccHHHHHHHHhcchhHHHHHHHHHHHHhHHHHHHHhhhhhHHHHhhhhcCCCchhhhhcCCCCC
Q 012131 254 LLIGTGAAPVHRELWSDGYFSVIAKLIGGVWLRTWIQGASAVSNMGMFIAEMSSDSFQLLGMAERGMLPEIFARRSQYGT 333 (470)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~~~~~~~r~~~ 333 (470)
..+.....|.++...++.|+.++.++..+++...++.+..+++.+++.++.+...+|.+++|+|||.+|++|+|+||+++
T Consensus 243 ~~~~~~~~~~~~l~~~~~p~~~~~~~~~g~~~~~~v~~~~~~s~~~~~~~~~~~~sr~~~a~ardg~lP~~~~~v~~~~t 322 (445)
T PRK10644 243 STAIMGMIPNAALRVSASPFGDAARMALGDTAGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAADDGLFPPIFARVNKAGT 322 (445)
T ss_pred HHHHHhCCCHHHHhcCCChHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHhhCcCCC
Confidence 99999999888877677899998888877887778888888888999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHHHHH--------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCcccCCchhhHHHhhhhh
Q 012131 334 PLVGILFSASGVILLSWL--------SFQEIVAAENFLYCFAMIMEFIAFVKLRMQYPEAIRPYKVPLGTVGAILLCIPP 405 (470)
Q Consensus 334 P~~ai~~~~~~~~~~~~~--------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (470)
|++|++++++++.++.+. .++.+.+++++...++|.+..++.+++|||+++.++|+ + +. ...+.
T Consensus 323 P~~Ai~~~~~i~~l~~l~~~~~~~~~~~~~l~~~~~~~~li~y~~~~~~~~~l~~~~~~~~~p~----~-~~---~~~~~ 394 (445)
T PRK10644 323 PVAGLLIVGVLMTIFQLSSISPNASKEFGLVSSVSVIFTLVPYLYTCAALLLLGHGHFGKARPA----Y-LA---VTLIA 394 (445)
T ss_pred CHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccccc----h-hH---HHHHH
Confidence 999999999998765543 36778899999999999999999999998876544442 2 22 23334
Q ss_pred HHHHHHHHHhccchHHHHHHHHHHHhhhhHHHHHHHhhcc
Q 012131 406 TLLILVVLALASPKVMAISVIAVLIGFFIQPCMTYAEKRQ 445 (470)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 445 (470)
.+++++.....+++.......+.+++...|++.+++|+++
T Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~ 434 (445)
T PRK10644 395 FVYCIWAVVGSGAKEVMWSFVTLMVITAFYALNYNRLHKN 434 (445)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 4455555555666677777777888888887766554444
|
|
| >TIGR00906 2A0303 cationic amino acid transport permease | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-54 Score=441.86 Aligned_cols=420 Identities=19% Similarity=0.254 Sum_probs=350.4
Q ss_pred ccccccccchhhHHHhHhhhhcc-cccchhhHHh--hhChHHHHHHHHHHHHHHHHHHHHHHHHhhccCccCCchhHhHH
Q 012131 18 KLERFQKVSVIPLVFLIFYEVSG-GPFGVEDSVM--AAGPLLALIGFLFFPFIWSIPEALITAEMGTMFPENGGYVVWVA 94 (470)
Q Consensus 18 ~~~~~r~l~~~~~~~~~~~~v~g-g~~~~~~~~~--~~g~~~~~~~~ii~~~~~~~~~al~~~el~~~~p~~GG~y~~~~ 94 (470)
+++++|+++.+++.++++|.++| |+|..+.... .+||. .+++|+++++. +++.++||+|+++++|++||.|+|++
T Consensus 23 ~~~L~r~L~~~~l~~l~ig~viGsGIf~l~g~~a~~~aGp~-~~ls~liagv~-~l~~al~yaElas~~P~sGg~Y~y~~ 100 (557)
T TIGR00906 23 ESKMKRCLTTWDLMALGIGSTIGAGIYVLTGEVARNDSGPA-IVLSFLISGLA-AVLSGFCYAEFGARVPKAGSAYLYSY 100 (557)
T ss_pred ccchhhcCCHHHHHHHHhhhhhcchhhhhhhHHHHhccCcH-HHHHHHHHHHH-HHHHHHHHHHHHHhCCCCCcceeeHH
Confidence 34589999999999999999988 8888876543 48885 78999999996 88899999999999999999999999
Q ss_pred HhhCChHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcccc-----------C-Cc--hHHHHHHHHHHHHHHHHHhhhh
Q 012131 95 SALGPHWGFQQGWMKWLSGVIDNALYPVLFLDYLKSAIPAL-----------E-GG--FPRIVAVLLLTTALTYMNYRGL 160 (470)
Q Consensus 95 ~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~-~~--~~~~~~~~~~~~~~~~~n~~g~ 160 (470)
+.+||.+||++||.+++.|....+..+...+.|+..+++.. . +. ......+++++++...+|.+|+
T Consensus 101 ~~~G~~~gfi~GW~~~l~~~~~~a~va~~~s~yl~~ll~~~~~~~~~~~~~~~~~~l~~~~~~~a~~ii~l~~~ln~~Gi 180 (557)
T TIGR00906 101 VTVGELWAFITGWNLILEYVIGTAAVARSWSAYFDELLNKQIGQFRRTYFKLNYDGLAEYPDFFAVCLILLLAVLLSFGV 180 (557)
T ss_pred HHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccCCcccccchHHHHHHHHHHHHHHHhch
Confidence 99999999999999999999999999999888887765310 0 00 1223456667778889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCccccc------cccccchHHHHH---HHHhhhhhHHHhhhhhccccCC
Q 012131 161 TIVGWVAIVLGVFSLVPFALMGLIAIPRLKPWRWCMV------DLKNVNWGLYLN---TLFWNLNYWDSISTLVGEVEDP 231 (470)
Q Consensus 161 ~~~~~~~~i~~~~~i~~~~~~~i~~~~~~~~~~~~~~------~~~~~~~~~~~~---~~~~~~~G~e~~~~~~~E~k~P 231 (470)
|.++|++.++..++++.++++.+.+..+.+.++|... +..+.++.+++. ..+|+|.|+|.+++++||+|||
T Consensus 181 k~s~~v~~i~~~iki~~l~~~iv~g~~~~~~~~~~~~~~~~~~~f~p~g~~g~l~g~~~~~faf~Gfd~v~~~aeE~knP 260 (557)
T TIGR00906 181 KESAWVNKIFTAINILVLLFVIIAGFTKADVANWSITEEKGAGGFMPYGFTGVLSGAATCFFAFIGFDAIATTGEEVKNP 260 (557)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhHHHhhCCchhccccccccCCCCCCcchHHHHHHHHHHHHHHhhHHHHHHhHHhccCc
Confidence 9999999999999999888888887776666666421 122334444443 3479999999999999999999
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHhccCCCcccccccHHHHHHHHhcchhHHHHHHHHHHHHhHHHHHHHhhhhhHH
Q 012131 232 GKTLPRALFYALILVVFAYFFPLLIGTGAAPVHRELWSDGYFSVIAKLIGGVWLRTWIQGASAVSNMGMFIAEMSSDSFQ 311 (470)
Q Consensus 232 ~k~ip~ai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~ 311 (470)
+||+||+++.++.+++++|++..++..+..|+++.+ .++|+....+..+.++...++.+..+++.+++.++.+.+.+|+
T Consensus 261 ~r~iP~aii~sl~i~~vlY~lv~~~l~~~vp~~~l~-~~~p~~~a~~~~g~~~~~~ii~~~~~~~~~~sl~~~~~~~sRi 339 (557)
T TIGR00906 261 QRAIPIGIVTSLLVCFVAYFLMSAALTLMMPYYLLD-PDAPFPVAFEYVGWGPAKYIVAVGALCGMSTSLLGGMFPLPRV 339 (557)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHhccccHHHhC-cCcHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999998887655 3568888877777788888888889999999999999999999
Q ss_pred HHhhhhcCCCchhhhhcC-CCCCChHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------
Q 012131 312 LLGMAERGMLPEIFARRS-QYGTPLVGILFSASGVILLSWL-SFQEIVAAENFLYCFAMIMEFIAFVKLRMQ-------- 381 (470)
Q Consensus 312 l~~~a~d~~lP~~~~~~~-r~~~P~~ai~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-------- 381 (470)
+|+|||||.+|++|+|+| |+++|++|+++.++++.++.+. +++.+.++.++...+.|.+..++++.+|++
T Consensus 340 l~amarDGlLP~~fakv~~r~~tP~~Ail~~~iv~~il~~~~~~~~l~~l~sig~ll~y~lv~~~~l~lR~~~~~~~~~~ 419 (557)
T TIGR00906 340 IYAMARDGLLFKWLAQINSKTKTPINATVVSGAIAALMAFLFDLKALVDLLSIGTLLAYSLVAACVLILRYQPGLVYGQA 419 (557)
T ss_pred HHHHHcCCCccHHHhccCCCCCCcHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccc
Confidence 999999999999999999 9999999999999998766654 688899999999999999999999999843
Q ss_pred ----------------------------------------------------------------------------CCCC
Q 012131 382 ----------------------------------------------------------------------------YPEA 385 (470)
Q Consensus 382 ----------------------------------------------------------------------------~~~~ 385 (470)
+|+.
T Consensus 420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 499 (557)
T TIGR00906 420 KDTDEKDTLDSWVPFTSKSESQSEGFSLRTLFSGLILGLSILTTYGRAAIAEEAWSIALLTLFLVLFLLVVLTIWRQPQN 499 (557)
T ss_pred ccccccccccccccccccccccccchhHHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 2333
Q ss_pred --CCCcccCCchhhHHHhhhhhHHHHHHHHHhccchHHHHHHHHHHHhhhhHHHHHHHhhc
Q 012131 386 --IRPYKVPLGTVGAILLCIPPTLLILVVLALASPKVMAISVIAVLIGFFIQPCMTYAEKR 444 (470)
Q Consensus 386 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 444 (470)
+|+||.|..+. ...+......+.+...+..++....+|+.+|+++|+.+.+++.+
T Consensus 500 ~~~~~f~~p~~p~----~p~~~i~~~~~l~~~l~~~~~~~~~~w~~~g~~~y~~yg~~~s~ 556 (557)
T TIGR00906 500 KQKVAFKVPLVPF----LPALSILINIFLMVQLDADTWVRFAIWMAIGFLIYFLYGIRHSL 556 (557)
T ss_pred CCCCCCCCCCchH----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhhhhhccC
Confidence 56788877633 23444556666676778889999999999999999998776654
|
|
| >PRK11387 S-methylmethionine transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-54 Score=434.79 Aligned_cols=416 Identities=17% Similarity=0.186 Sum_probs=322.5
Q ss_pred cccccccchhhHHHhHhhhhcc-cccchhhH-HhhhChHHHHHHHHHHHHHHHHHHHHHHHHhhccCccCCchhHhHHHh
Q 012131 19 LERFQKVSVIPLVFLIFYEVSG-GPFGVEDS-VMAAGPLLALIGFLFFPFIWSIPEALITAEMGTMFPENGGYVVWVASA 96 (470)
Q Consensus 19 ~~~~r~l~~~~~~~~~~~~v~g-g~~~~~~~-~~~~g~~~~~~~~ii~~~~~~~~~al~~~el~~~~p~~GG~y~~~~~~ 96 (470)
+++||+++.+++.++++|.++| |+|..+.. +..+||...+++|++++++ .++.+++|+||++++|++||.|.|+++.
T Consensus 10 ~~l~r~L~~~~~~~l~ig~~IG~Gif~~~g~~~~~~G~~~~~l~~~i~~~~-~~~~~~~~aELas~~P~aGG~y~y~~~~ 88 (471)
T PRK11387 10 GQFKRTMKVRHLVMLSLGGVIGTGLFFNTGYIISTTGAAGTLLAYLIGALV-VYLVMQCLGELSVAMPETGAFHVYAARY 88 (471)
T ss_pred hhhhhcCcHHHHHHHHHHhhhhhHHHHHHHHHHHHhCcHHHHHHHHHHHHH-HHHHHHHHHHHHHHcCCCCCHHHHHHHh
Confidence 3589999999999999999988 88876554 5668886678999999996 8889999999999999999999999999
Q ss_pred hCChHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 012131 97 LGPHWGFQQGWMKWLSGVIDNALYPVLFLDYLKSAIPALEGGFPRIVAVLLLTTALTYMNYRGLTIVGWVAIVLGVFSLV 176 (470)
Q Consensus 97 ~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~i~~~~~i~ 176 (470)
+||.+||.+||.+|+++....+......+.+++.++|. .+.+....++.+++..+|++|+|..++.+.+...++++
T Consensus 89 ~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~p~----~~~~~~~~~~~~~~~~in~~gvk~~~~~~~~~~~~ki~ 164 (471)
T PRK11387 89 LGPATGYTVAWLYWLTWTVALGSSLTAAGFCMQYWFPQ----VPVWPWCLLFCALIFGLNVVSTRFFAEGEFWFSLIKVV 164 (471)
T ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc----CcHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999988887777777676665553 23445555666778899999999999999988888877
Q ss_pred HHHHHHHHHhh---c------cCC----CccccccccccchHH---HHHHHHhhhhhHHHhhhhhccccCCCCchhHHHH
Q 012131 177 PFALMGLIAIP---R------LKP----WRWCMVDLKNVNWGL---YLNTLFWNLNYWDSISTLVGEVEDPGKTLPRALF 240 (470)
Q Consensus 177 ~~~~~~i~~~~---~------~~~----~~~~~~~~~~~~~~~---~~~~~~~~~~G~e~~~~~~~E~k~P~k~ip~ai~ 240 (470)
.++++.+.++. . .++ +++...+..+.+..+ .+...+|+|.|+|.+++++||+|||+||+||+++
T Consensus 165 ~l~~~ii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~faf~G~e~~~~~a~E~knP~r~iPrAi~ 244 (471)
T PRK11387 165 TILAFIVLGGAAIFGFIPMQDGSPAPGLRNLTAEGWFPHGGLPILMTMVAVNFAFSGTELIGIAAGETENPAKVIPVAIR 244 (471)
T ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCCcccccCCCCCCcccHHHHHHHHHHHHHHHcCHHHHHHHHHHhcChhhHHHHHHH
Confidence 76655554321 1 011 111111111222222 2334579999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCcccccccHHHHHHHHhcchhHHHHHHHHHHHHhHHHHHHHhhhhhHHHHhhhhcCC
Q 012131 241 YALILVVFAYFFPLLIGTGAAPVHRELWSDGYFSVIAKLIGGVWLRTWIQGASAVSNMGMFIAEMSSDSFQLLGMAERGM 320 (470)
Q Consensus 241 ~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~ 320 (470)
.++.++.++|++..+......|.++...+++|+.+++++.+++++..++.+.++++.+++.++.+++.||.+|+|||||.
T Consensus 245 ~~~~~~~~~y~~~~~~~~~~~p~~~~~~~~~p~~~~~~~~g~~~~~~ii~~~~~~s~~~~~~~~~~~~sR~l~a~ardg~ 324 (471)
T PRK11387 245 TTIARLVIFFVGTVLVLAALIPMQQAGVEKSPFVLVFEKVGIPYAADIFNFVILTAILSAANSGLYASGRMLWSLSNEGT 324 (471)
T ss_pred HHHHHHHHHHHHHHHHHheecCccccCccCChHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCC
Confidence 99999999999999999899998887767789999999988899999999999999999999999999999999999999
Q ss_pred CchhhhhcCCCCCChHHHHHHHHHHHHHHHHh-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC-----CCC
Q 012131 321 LPEIFARRSQYGTPLVGILFSASGVILLSWLS-------FQEIVAAENFLYCFAMIMEFIAFVKLRMQYPEA-----IRP 388 (470)
Q Consensus 321 lP~~~~~~~r~~~P~~ai~~~~~~~~~~~~~~-------~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~ 388 (470)
+|++|+|+||+++|++|+++..+++++..+.. ++.+.++.++...+.|++..++++++||++|+. +||
T Consensus 325 lP~~f~~~~~~~~P~~Ail~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~li~y~~~~~~~i~lr~~~~~~~~~~~~~~ 404 (471)
T PRK11387 325 LPACFARLTKRGIPLTALSVSMLGGLLALFSSVVAPDTVFVALSAISGFAVVAVWLSICASHFMFRRRHLRDGKALSELA 404 (471)
T ss_pred cCHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCC
Confidence 99999999999999999998876654333321 445777888888999999999999999887542 578
Q ss_pred cccCCchhhHHHhhhhhHHHHHHHHHhcc--chHHHHHHHHHHHhhhhHHHHHH
Q 012131 389 YKVPLGTVGAILLCIPPTLLILVVLALAS--PKVMAISVIAVLIGFFIQPCMTY 440 (470)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~ 440 (470)
||.|..+.... .+++..++......... ......+..++++++..|..++|
T Consensus 405 ~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (471)
T PRK11387 405 YRAPWYPLTPI-LGFVLCLLACVGLAFDPSQRIALWCGIPFVALCYGAYYLTQR 457 (471)
T ss_pred ccCCCccHHHH-HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99988643332 23332333222221111 11244566666666776666544
|
|
| >PRK10249 phenylalanine transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-53 Score=429.83 Aligned_cols=398 Identities=17% Similarity=0.213 Sum_probs=321.3
Q ss_pred CcccceeeCCCCCcccccccccchhhHHHhHhhhhcc-cccchhh-HHhhhChHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 012131 4 NNVHYVQLGEDSSPKLERFQKVSVIPLVFLIFYEVSG-GPFGVED-SVMAAGPLLALIGFLFFPFIWSIPEALITAEMGT 81 (470)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~r~l~~~~~~~~~~~~v~g-g~~~~~~-~~~~~g~~~~~~~~ii~~~~~~~~~al~~~el~~ 81 (470)
|+.+.+|++.+++ .++++|+++.+++.++++|.++| |+|..+. .+..+||. .+++|++++++ .++.+++++||++
T Consensus 3 ~~~~~~~~~~~~~-~~~l~r~l~~~~~~~i~ig~~IGsGif~~~g~~~~~aGp~-~~l~~li~~~~-~~~~~~~~aEl~~ 79 (458)
T PRK10249 3 NASTVSEDTASNQ-EPTLHRGLHNRHIQLIALGGAIGTGLFLGIGPAIQMAGPA-VLLGYGVAGII-AFLIMRQLGEMVV 79 (458)
T ss_pred CccccchhhccCC-chhhhccCcHhHhhhhhhhcccchhHHHHHHHHHHhcCcH-HHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 3444444443333 34588999999999999999988 7777654 55568994 78999999986 8889999999999
Q ss_pred cCccCCchhHhHHHhhCChHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHhhhhH
Q 012131 82 MFPENGGYVVWVASALGPHWGFQQGWMKWLSGVIDNALYPVLFLDYLKSAIPALEGGFPRIVAVLLLTTALTYMNYRGLT 161 (470)
Q Consensus 82 ~~p~~GG~y~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~g~~ 161 (470)
++|++||.|.|+++.+||.+||.+||.+|+.+....++.....+.|++.++|. .+.+....+++++...+|++|+|
T Consensus 80 ~~P~~Gg~~~y~~~~~g~~~gf~~gw~~~~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~~~l~~~lN~~gv~ 155 (458)
T PRK10249 80 EEPVSGSFAHFAYKYWGPFAGFLSGWNYWVMFVLVGMAELTAAGIYMQYWFPD----VPTWIWAAAFFIIINAVNLVNVR 155 (458)
T ss_pred hCCCCCCHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc----CcHHHHHHHHHHHHHHHHHhcch
Confidence 99999999999999999999999999999999888888888888888877664 24556677778889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh---hccCC---Ccccc----ccccccchHHHH---HHHHhhhhhHHHhhhhhccc
Q 012131 162 IVGWVAIVLGVFSLVPFALMGLIAI---PRLKP---WRWCM----VDLKNVNWGLYL---NTLFWNLNYWDSISTLVGEV 228 (470)
Q Consensus 162 ~~~~~~~i~~~~~i~~~~~~~i~~~---~~~~~---~~~~~----~~~~~~~~~~~~---~~~~~~~~G~e~~~~~~~E~ 228 (470)
..++++.+...++++.++++.+.++ ...++ .++.+ .+..+.+|.++. ...+|+|.|+|.+++++||+
T Consensus 156 ~~~~i~~~~~~ikv~~i~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~af~G~e~~~~~a~E~ 235 (458)
T PRK10249 156 LYGETEFWFALIKVLAIIGMIGFGLWLLFSGHGGEKASIDNLWRYGGFFATGWNGLILSLAVIMFSFGGLELIGITAAEA 235 (458)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhccCCCCCCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHHh
Confidence 9999999988888765555444322 22111 11111 111234555543 34479999999999999999
Q ss_pred cCCCCchhHHHHHHHHHHHHHHHHHHHHHHhccCCCcccccccHHHHHHHHhcchhHHHHHHHHHHHHhHHHHHHHhhhh
Q 012131 229 EDPGKTLPRALFYALILVVFAYFFPLLIGTGAAPVHRELWSDGYFSVIAKLIGGVWLRTWIQGASAVSNMGMFIAEMSSD 308 (470)
Q Consensus 229 k~P~k~ip~ai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (470)
|||+|++||+++.+...+.++|++.........|+++....++|+.++.++.+++....++.+..+++.+++.++.+.+.
T Consensus 236 ~~P~k~iPrai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 315 (458)
T PRK10249 236 RDPEKSIPKAVNQVVYRILLFYIGSLVVLLALYPWVEVKSNSSPFVMIFHNLDSNVVASALNFVILVASLSVYNSGVYSN 315 (458)
T ss_pred cCHhhHHHHHHHHHHHHHHHHHHHHHHHHheeccccccCccCCcHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998888888888877666789999998888888888888889999999999999999
Q ss_pred hHHHHhhhhcCCCchhhhhcCCCCCChHHHHHHHHHHHHHHHH-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHh-
Q 012131 309 SFQLLGMAERGMLPEIFARRSQYGTPLVGILFSASGVILLSWL-------SFQEIVAAENFLYCFAMIMEFIAFVKLRM- 380 (470)
Q Consensus 309 sR~l~~~a~d~~lP~~~~~~~r~~~P~~ai~~~~~~~~~~~~~-------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~- 380 (470)
||.+|++||||.+|++|+|+||+++|++|++++.+++.+..+. .++.+.++.+....+.|.+..++++++||
T Consensus 316 sR~l~a~ardg~lP~~~~kv~~~~~P~~All~~~~i~~l~~l~~~~~~~~~f~~l~~~~~~~~~i~y~~~~~~~l~~r~~ 395 (458)
T PRK10249 316 SRMLFGLSVQGNAPKFLTRVSRRGVPINSLMLSGAITSLVVLINYLLPQKAFGLLMALVVATLLLNWIMICLAHLRFRAA 395 (458)
T ss_pred HHHHHHHhcCCCcCHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999988655433 26778899999999999999999999997
Q ss_pred -hCCCCCCCcccCCchhhHHHhhhhhHHHH
Q 012131 381 -QYPEAIRPYKVPLGTVGAILLCIPPTLLI 409 (470)
Q Consensus 381 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (470)
++++.++|||.|.++. ..+.++....+.
T Consensus 396 ~~~~~~~~p~~~~~~p~-~~~~~l~~~~~~ 424 (458)
T PRK10249 396 MRRQGRETQFKALLYPF-GNYLCIAFLGMI 424 (458)
T ss_pred HHhcCCCCCccCCCccH-HHHHHHHHHHHH
Confidence 4455678999987644 343344433333
|
|
| >PRK11357 frlA putative fructoselysine transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-53 Score=430.44 Aligned_cols=420 Identities=19% Similarity=0.284 Sum_probs=330.5
Q ss_pred cccccccchhhHHHhHhhhhcc-cccchhhHHh-h-hChHHHHHHHHHHHHHHHHHHHHHHHHhhccCccCCchhHhHHH
Q 012131 19 LERFQKVSVIPLVFLIFYEVSG-GPFGVEDSVM-A-AGPLLALIGFLFFPFIWSIPEALITAEMGTMFPENGGYVVWVAS 95 (470)
Q Consensus 19 ~~~~r~l~~~~~~~~~~~~v~g-g~~~~~~~~~-~-~g~~~~~~~~ii~~~~~~~~~al~~~el~~~~p~~GG~y~~~~~ 95 (470)
++++|++++++..+++++.++| |++..+.... . ++|...+++|++++++ .++.+++|+|+++++|++||.|.|+++
T Consensus 4 ~~L~r~l~~~~~~~l~vg~~ig~Gif~~~g~~~~~~G~~~~~~l~~li~~v~-~l~~al~~aEl~s~~P~~GG~y~y~~~ 82 (445)
T PRK11357 4 QELQRKLGFWAVLAIAVGTTVGSGIFVSVGEVAKAAGTPWLTVLAFVIGGLI-VIPQMCVYAELSTAYPENGADYVYLKN 82 (445)
T ss_pred ccccccccHHHHHHHHHHhheechhccchHHHHHHcCCcHHHHHHHHHHHHH-HHHHHHHHHHHHhhcCCCCCceeeHHH
Confidence 3488999999999999999877 7888776543 3 4455578899999986 999999999999999999999999999
Q ss_pred hhCChHHHHHHHHHH-HHHhhhHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 012131 96 ALGPHWGFQQGWMKW-LSGVIDNALYPVLFLDYLKSAIPALEGGFPRIVAVLLLTTALTYMNYRGLTIVGWVAIVLGVFS 174 (470)
Q Consensus 96 ~~g~~~g~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~i~~~~~ 174 (470)
.+||.+||+.||..+ .......+..+..+++|+....|. .+......+.+++.++..+|++|+|..+|+|.+..+++
T Consensus 83 ~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~--~~~~~~~~~~~~~~~~~~ln~~gv~~~~~v~~~~~~~~ 160 (445)
T PRK11357 83 AGSRPLAFLSGWASFWANDAPSLSIMALAIVSNLGFLTPI--DPLLGKFIAAGLIIAFMLLHLRSVEGGAAFQTLITIAK 160 (445)
T ss_pred hcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--chHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 999999999999754 455666777888888888776553 12233456666677788999999999999999999999
Q ss_pred HHHHHHHHHHHhhccCCCccccc---cccccc-hHHH---HHHHHhhhhhHHHhhhhhccccCCCCchhHHHHHHHHHHH
Q 012131 175 LVPFALMGLIAIPRLKPWRWCMV---DLKNVN-WGLY---LNTLFWNLNYWDSISTLVGEVEDPGKTLPRALFYALILVV 247 (470)
Q Consensus 175 i~~~~~~~i~~~~~~~~~~~~~~---~~~~~~-~~~~---~~~~~~~~~G~e~~~~~~~E~k~P~k~ip~ai~~~~~~~~ 247 (470)
++.++++.+.+....+++++... ..+..+ +.++ +...+|+|.|+|.+++++||+|||+||+||++..++.++.
T Consensus 161 ~~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~r~iP~Ai~~~~~i~~ 240 (445)
T PRK11357 161 IIPFTIVIGLGIFWFKAENFAAPTTTAIGATGSFMALLAGISATSWSYTGMASICYMTGEIKNPGKTMPRALIGSCLLVL 240 (445)
T ss_pred HHHHHHHHHHHHHHcCCccccCCCcccccccchHHHHHHHHHHHHHHHhhHHHHHhhHHHhcCccccchHHHHHHHHHHH
Confidence 88777666655432233333211 111112 3333 3344799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccCCCcccccccHHHHHHHHh--cchhHHHHHHHHHHHHhHHHHHHHhhhhhHHHHhhhhcCCCchhh
Q 012131 248 FAYFFPLLIGTGAAPVHRELWSDGYFSVIAKLI--GGVWLRTWIQGASAVSNMGMFIAEMSSDSFQLLGMAERGMLPEIF 325 (470)
Q Consensus 248 ~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~~~ 325 (470)
++|++......+..|.+++..++.|+.++.+.. .++....++.+..+++.+++.++.+.+.+|.+|+|+|||.+|++|
T Consensus 241 ~~Y~l~~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~sR~~~a~ardg~lp~~~ 320 (445)
T PRK11357 241 VLYTLLALVISGLMPFDKLANSETPISDALTWIPALGSTAGIFVAITAMIVILGSLSSCVMYQPRLEYAMAKDNLFFKCF 320 (445)
T ss_pred HHHHHHHHHHHhcCCHHHHhcCCchHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcCCchHHH
Confidence 999999999988888888777778888887764 455666677777888889999999999999999999999999999
Q ss_pred hhcC-CCCCChHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCcccCCchhhHHHhhh
Q 012131 326 ARRS-QYGTPLVGILFSASGVILLSW-LSFQEIVAAENFLYCFAMIMEFIAFVKLRMQYPEAIRPYKVPLGTVGAILLCI 403 (470)
Q Consensus 326 ~~~~-r~~~P~~ai~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (470)
+|+| |+++|++|+++++++++++.+ .+++.+.+..++...+.|.+...+.+++||++ +.+||||.|.+++.. +.++
T Consensus 321 ~~v~~~~~tP~~a~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~i~lr~~~-~~~~~~k~p~~~~~~-~~~~ 398 (445)
T PRK11357 321 GHVHPKYNTPDVSIILQGALGIFFIFVSDLTSLLGYFTLVMCFKNTLTFGSIIWCRKRD-DYKPLWRTPAFGLMT-TLAI 398 (445)
T ss_pred HHhCCCCCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHheeecCC-CCCCCcccCCchHHH-HHHH
Confidence 9999 899999999999999877664 46788888888888999999989999888764 567899999874433 3334
Q ss_pred hhHHHHHHHHHhccc-hHHHHHHHHHHHhhhhHHHHHHHhh
Q 012131 404 PPTLLILVVLALASP-KVMAISVIAVLIGFFIQPCMTYAEK 443 (470)
Q Consensus 404 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~ 443 (470)
+..+++.+.....++ .....+..++++|...|+.++++++
T Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~~~~~~~ 439 (445)
T PRK11357 399 ASSLILVASTFVWAPIPGLICAVIVIATGLPAYAFWAKRSR 439 (445)
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHHhhhHHhheechhh
Confidence 444444443333344 3355678888889998877665544
|
|
| >PRK10746 putative transport protein YifK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-53 Score=426.29 Aligned_cols=421 Identities=15% Similarity=0.178 Sum_probs=337.3
Q ss_pred cccccccchhhHHHhHhhhhcc-cccch-hhHHhhhChHHHHHHHHHHHHHHHHHHHHHHHHhhccCccCCchhHhHHHh
Q 012131 19 LERFQKVSVIPLVFLIFYEVSG-GPFGV-EDSVMAAGPLLALIGFLFFPFIWSIPEALITAEMGTMFPENGGYVVWVASA 96 (470)
Q Consensus 19 ~~~~r~l~~~~~~~~~~~~v~g-g~~~~-~~~~~~~g~~~~~~~~ii~~~~~~~~~al~~~el~~~~p~~GG~y~~~~~~ 96 (470)
+++||+++.+++.++++|+++| |+|.. ...+..+|| ..+++|++++++ .++.+++++||++++|++||.|+|++|.
T Consensus 6 ~~l~r~L~~~~~~~i~ig~~IGtGlf~~~g~~l~~aGp-~~~l~~~i~g~~-~~~v~~~~aEl~~~~P~sGg~~~y~~~~ 83 (461)
T PRK10746 6 PELQRGLEARHIELIALGGTIGVGLFMGAASTLKWAGP-SVLLAYIIAGLF-VFFIMRSMGEMLFLEPVTGSFAVYAHRY 83 (461)
T ss_pred hHHhccCcHHHHHHHHHHhhhhhhHHHHhHHHHHhcCh-HHHHHHHHHHHH-HHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 3588999999999999999988 77764 556667999 578999999986 7888999999999999999999999999
Q ss_pred hCChHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 012131 97 LGPHWGFQQGWMKWLSGVIDNALYPVLFLDYLKSAIPALEGGFPRIVAVLLLTTALTYMNYRGLTIVGWVAIVLGVFSLV 176 (470)
Q Consensus 97 ~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~i~~~~~i~ 176 (470)
+||.+||.+||.+|+.+....+......+.|++.++|. .+.+.+..++++++..+|++|+|..+++|.+.+.++++
T Consensus 84 ~g~~~Gf~~gw~~~~~~~~~~~~~~~a~~~~l~~~~p~----~~~~~~~~~~~~~~~~lN~~gv~~~~~~e~~~~~~ki~ 159 (461)
T PRK10746 84 MSPFFGYLTAWSYWFMWMAVGISEITAIGVYVQFWFPE----MAQWIPALIAVALVALANLAAVRLYGEIEFWFAMIKVT 159 (461)
T ss_pred hCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC----CchHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998888888888999888764 24456666777888999999999999999998888877
Q ss_pred HHHHHHHHHh----hc-c---C---CCcccccc-ccccchHHHH---HHHHhhhhhHHHhhhhhccccCCCCchhHHHHH
Q 012131 177 PFALMGLIAI----PR-L---K---PWRWCMVD-LKNVNWGLYL---NTLFWNLNYWDSISTLVGEVEDPGKTLPRALFY 241 (470)
Q Consensus 177 ~~~~~~i~~~----~~-~---~---~~~~~~~~-~~~~~~~~~~---~~~~~~~~G~e~~~~~~~E~k~P~k~ip~ai~~ 241 (470)
.++++.+.++ .. . + .+++.+.+ ..+.++.++. ...+|+|.|+|.+++.+||+|||+|++|||+..
T Consensus 160 ~i~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~g~~~~~~~~~faf~G~e~v~~~a~E~knP~k~iP~Ai~~ 239 (461)
T PRK10746 160 TIIVMIVIGLGVIFFGFGNGGQSIGFSNLTEHGGFFAGGWKGFLTALCIVVASYQGVELIGITAGEAKNPQVTLRSAVGK 239 (461)
T ss_pred HHHHHHHHHHHHHHhCCCCCCCCCccccccCCCCcCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHhcChhhHHHHHHHH
Confidence 6555544322 11 1 1 12221111 1133455443 444799999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCcccccccHHHHHHHHhcchhHHHHHHHHHHHHhHHHHHHHhhhhhHHHHhhhhcCCC
Q 012131 242 ALILVVFAYFFPLLIGTGAAPVHRELWSDGYFSVIAKLIGGVWLRTWIQGASAVSNMGMFIAEMSSDSFQLLGMAERGML 321 (470)
Q Consensus 242 ~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~l 321 (470)
+...+.++|++..+......|+++...+++|+.+..++.+.+....++.+.++++.+++.++.+++.||.+++|||||.+
T Consensus 240 ~~~~i~~~yv~~~~~~~~~~p~~~~~~~~sp~v~~~~~~g~~~~~~i~~~~il~a~~s~~n~~~~~~sR~l~~~a~~g~l 319 (461)
T PRK10746 240 VLWRILIFYVGAIFVIVTIFPWNEIGSNGSPFVLTFAKIGITAAAGIINFVVLTAALSGCNSGMYSCGRMLYALAKNRQL 319 (461)
T ss_pred HHHHHHHHHHHHHHHHeeeeCCCCCCCCCCcHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 99999999999999999999999988788899999888888888888888999999999999999999999999999999
Q ss_pred chhhhhcCCCCCChHHHHHHHHHHHHHH---HH------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC--CCCCcc
Q 012131 322 PEIFARRSQYGTPLVGILFSASGVILLS---WL------SFQEIVAAENFLYCFAMIMEFIAFVKLRMQYPE--AIRPYK 390 (470)
Q Consensus 322 P~~~~~~~r~~~P~~ai~~~~~~~~~~~---~~------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 390 (470)
|++|+|+||+++|++|+++..+..++.. +. .++.+.+++++...+.|...+++++++||++|+ .++|||
T Consensus 320 P~~~~~~~~~g~P~~al~~~~~~~~l~~~~~~~~~~~~~~f~~l~~~~~~~~~i~w~~i~~~~i~~r~~~~~~~~~~~~~ 399 (461)
T PRK10746 320 PAAMAKVSRHGVPVAGVAVSILILLVGSCLNYIIPNPQRVFVYVYSASVLPGMVPWFVILISQLRFRRAHKAAIASHPFR 399 (461)
T ss_pred CHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCc
Confidence 9999999999999999998765443211 11 256788899999999999999999999999876 367999
Q ss_pred cCCchhhHHHhhhhhHHHHHHHHH-hcc-chHHHHHHHHHHHhhhhHHHHHHHhhccc
Q 012131 391 VPLGTVGAILLCIPPTLLILVVLA-LAS-PKVMAISVIAVLIGFFIQPCMTYAEKRQW 446 (470)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 446 (470)
.|.++....+ +....+.+..... .++ ......++..++++.+.|..+++.+|+|-
T Consensus 400 ~~~~p~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~ 456 (461)
T PRK10746 400 SILFPWANYL-TMAFLICVLIGMYFNEDTRMSLFVGIIFLLAVTLIYKVFGLNRHGKA 456 (461)
T ss_pred CCCccHHHHH-HHHHHHHHHHHHHHCccHHHHHHHHHHHHHHHHHHHHHHHhhhhcch
Confidence 8887555544 3333333322222 221 24566777778888888888877776553
|
|
| >TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-53 Score=428.98 Aligned_cols=415 Identities=19% Similarity=0.296 Sum_probs=336.2
Q ss_pred cccccchhhHHHhHhhhhcc-cccchhhHHhh-hChHHHHHHHHHHHHHHHHHHHHHHHHhhccCcc-CCchhHhHHHhh
Q 012131 21 RFQKVSVIPLVFLIFYEVSG-GPFGVEDSVMA-AGPLLALIGFLFFPFIWSIPEALITAEMGTMFPE-NGGYVVWVASAL 97 (470)
Q Consensus 21 ~~r~l~~~~~~~~~~~~v~g-g~~~~~~~~~~-~g~~~~~~~~ii~~~~~~~~~al~~~el~~~~p~-~GG~y~~~~~~~ 97 (470)
++|+++++++.++++++++| |++..|..... +||...+++|++++++ .++.+++|+|+++++|+ +||.|+|+++.+
T Consensus 5 ~~~~l~~~~~~~l~ig~vIGsGif~~~~~~~~~~g~~~~~~~wli~~~~-~~~~al~~aEl~s~~P~~sGG~y~y~~~~~ 83 (473)
T TIGR00905 5 KSKKLGLFALTALVIGSMIGSGIFSLPQNLASVAGPGAVIIGWIITGVG-MLALAFVFAILATKKPELDGGIYAYAREGF 83 (473)
T ss_pred cCCCccHHHHHHHHHHHHHhHHHHHhHHHHHHhcchHHHHHHHHHHHHH-HHHHHHHHHHHHhhCCCCCCChhhhHHhHc
Confidence 57899999999999999988 78888877654 6776678999999996 88889999999999999 999999999999
Q ss_pred CChHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccccC--CchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 012131 98 GPHWGFQQGWMKWLSGVIDNALYPVLFLDYLKSAIPALE--GGFPRIVAVLLLTTALTYMNYRGLTIVGWVAIVLGVFSL 175 (470)
Q Consensus 98 g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~i~~~~~i 175 (470)
||.+||..||.+|+.+.....+.+....+++..++|... ++++..+.+++++++...+|++|+|..+|+|.+...+++
T Consensus 84 G~~~gf~~gw~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~ln~~Gi~~~~~i~~~~~~~~l 163 (473)
T TIGR00905 84 GPYIGFMSGWGYWLSAWIGNVAYAVLLFSALGYFFPLFGSGNPVPSILGASVLLWVFTFLVLRGVRQAAFINTITTIAKL 163 (473)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHH
Confidence 999999999999998888888888888888888887432 345666777788888999999999999999999999988
Q ss_pred HHHHHHHHHHhhccCCCccc----cc-ccc-ccchHHHH---HHHHhhhhhHHHhhhhhccccCCCCchhHHHHHHHHHH
Q 012131 176 VPFALMGLIAIPRLKPWRWC----MV-DLK-NVNWGLYL---NTLFWNLNYWDSISTLVGEVEDPGKTLPRALFYALILV 246 (470)
Q Consensus 176 ~~~~~~~i~~~~~~~~~~~~----~~-~~~-~~~~~~~~---~~~~~~~~G~e~~~~~~~E~k~P~k~ip~ai~~~~~~~ 246 (470)
+.++++.+.++...+++++. +. .+. ...+.++. ...+|+|.|+|.+++++||+|| +||+||+++.+..++
T Consensus 164 ~~l~~~ii~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~-~r~iPrai~~~~~i~ 242 (473)
T TIGR00905 164 IPLFLFIIIGWFWFKLDLFTADFWGHDVPSLGSVFSQVKNTMLVTLWVFIGIEGAVVSSGRAKN-KSDVGKATVLGTLGA 242 (473)
T ss_pred HHHHHHHHHHHHHhCchhcccccCccCCCcccchHHHHHHHHHHHHHHHHhHHHHHHHHHHHhc-cccchHHHHHHHHHH
Confidence 88777766654333333221 11 001 11233333 3357999999999999999999 999999999999999
Q ss_pred HHHHHHHHHHHHhccCCCcccccccH-HHHHHHHhcchhHHHHHHHHHHHHhHHHHHHHhhhhhHHHHhhhhcCCCchhh
Q 012131 247 VFAYFFPLLIGTGAAPVHRELWSDGY-FSVIAKLIGGVWLRTWIQGASAVSNMGMFIAEMSSDSFQLLGMAERGMLPEIF 325 (470)
Q Consensus 247 ~~~y~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~~~ 325 (470)
.++|++......+..|.+++..+++| ..++.++..++++..++.+..+++.+++.++.+.+.+|.+|+|||||.+|++|
T Consensus 243 ~~~Yil~~~~~~~~~~~~~l~~~~~p~~~~~~~~~~g~~~~~~i~i~~~is~~~~~~~~~~~~sR~~~amardg~lP~~~ 322 (473)
T TIGR00905 243 LVIYILITLLSLGVLPQQELANLPNPSMAAVLEMIVGKWGAVLISLGLIISVLGSLLSWTMLAAEVPFSAAKDGLFPKIF 322 (473)
T ss_pred HHHHHHHHHHHHhCcCHHHHhhCCCchHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHH
Confidence 99999999998888888887777788 77888888888888889999999999999999999999999999999999999
Q ss_pred hhcCCCCCChHHHHHHHHHHHHHHHH------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCcccCCchhhHH
Q 012131 326 ARRSQYGTPLVGILFSASGVILLSWL------SFQEIVAAENFLYCFAMIMEFIAFVKLRMQYPEAIRPYKVPLGTVGAI 399 (470)
Q Consensus 326 ~~~~r~~~P~~ai~~~~~~~~~~~~~------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (470)
+|+||+++|++|+++..+++.++... +++.+.++.++...+.|.+..++.+++|+|++.++ .+.|.. .
T Consensus 323 ~~v~~~~tP~~Ai~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~i~y~~~~~a~~~lr~~~~~~~--~~~~~~----~ 396 (473)
T TIGR00905 323 GRVNKNGAPSVALLLTNILIQLFLLLTLLTSSAYNVLVSLAVVMILVPYLLSAAYLLKLAKVGTYPK--IKNRKA----L 396 (473)
T ss_pred HhhCccCCCHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccc--cccchH----H
Confidence 99998899999999999887544332 47888999999999999999999999988762111 111222 2
Q ss_pred HhhhhhHHHHHHHHHhccchHHHHHHHHHHHhhhhHHHHHHHhh
Q 012131 400 LLCIPPTLLILVVLALASPKVMAISVIAVLIGFFIQPCMTYAEK 443 (470)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 443 (470)
+...+..+++.+.....+++....+..++++|...|.+++|.++
T Consensus 397 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~~~~~~~ 440 (473)
T TIGR00905 397 IVGVIACVYSIWLLYAAGLKYLLLGFILYAPGIIFYGRARKERG 440 (473)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 22334444455555556667777888888999988888666553
|
This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions. |
| >PRK10836 lysine transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-52 Score=425.11 Aligned_cols=387 Identities=17% Similarity=0.217 Sum_probs=306.2
Q ss_pred ccccccccchhhHHHhHhhhhcc-cccchhh-HHhhhChHHHHHHHHHHHHHHHHHHHHHHHHhhccCccCCchhHhHHH
Q 012131 18 KLERFQKVSVIPLVFLIFYEVSG-GPFGVED-SVMAAGPLLALIGFLFFPFIWSIPEALITAEMGTMFPENGGYVVWVAS 95 (470)
Q Consensus 18 ~~~~~r~l~~~~~~~~~~~~v~g-g~~~~~~-~~~~~g~~~~~~~~ii~~~~~~~~~al~~~el~~~~p~~GG~y~~~~~ 95 (470)
+++.||+++.+++.++++|.++| |+|..+. .+..+||...+++|++++++ .++.++||+||++++|++||.|.|+++
T Consensus 10 ~~~l~r~L~~~~~~~l~vG~~IGsGif~~~g~~~~~aGp~~~l~a~~i~g~~-~~~~al~~aEL~s~~P~sGg~y~y~~~ 88 (489)
T PRK10836 10 APGLRRELKARHLTMIAIGGSIGTGLFVASGATISQAGPGGALLSYMLIGLM-VYFLMTSLGELAAYMPVSGSFATYGQN 88 (489)
T ss_pred cccccccCcHHHHHHHHHhhhhhhhhhHhhhHHHHhcCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHCCCCCCHHHHHHH
Confidence 34588999999999999999989 8888765 55568996689999999996 889999999999999999999999999
Q ss_pred hhCChHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 012131 96 ALGPHWGFQQGWMKWLSGVIDNALYPVLFLDYLKSAIPALEGGFPRIVAVLLLTTALTYMNYRGLTIVGWVAIVLGVFSL 175 (470)
Q Consensus 96 ~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~i~~~~~i 175 (470)
.+||.+||..||.+++.+....+........++..+++. .+.+....++++++..+|++|+|..++.|.+.+..++
T Consensus 89 ~~g~~~gf~~Gw~~~~~~~~~~a~~~~a~~~~~~~~~~~----~~~~~~~~~~~~~~~~lN~~gv~~~~~~~~~~~~~ki 164 (489)
T PRK10836 89 YVEEGFGFALGWNYWYNWAVTIAVDLVAAQLVMSWWFPD----TPGWIWSALFLGVIFLLNYISVRGFGEAEYWFSLIKV 164 (489)
T ss_pred HcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC----CchHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHH
Confidence 999999999999999988777665544444455555543 2334445566777889999999999999999888887
Q ss_pred HHHHHHHHHHh---h---cc----CCCcccccc-ccccchHHHHH---HHHhhhhhHHHhhhhhccccCCCCchhHHHHH
Q 012131 176 VPFALMGLIAI---P---RL----KPWRWCMVD-LKNVNWGLYLN---TLFWNLNYWDSISTLVGEVEDPGKTLPRALFY 241 (470)
Q Consensus 176 ~~~~~~~i~~~---~---~~----~~~~~~~~~-~~~~~~~~~~~---~~~~~~~G~e~~~~~~~E~k~P~k~ip~ai~~ 241 (470)
+.++.+++.++ . +. +.+++.+.+ +.+.++.+.+. ..+|+|.|+|.+++++||+|||+||+|||++.
T Consensus 165 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~faf~G~e~~~~~a~E~knP~r~iPrAi~~ 244 (489)
T PRK10836 165 TTVIVFIIVGVLMIIGIFKGAEPAGWSNWTIGDAPFAGGFAAMIGVAMIVGFSFQGTELIGIAAGESEDPAKNIPRAVRQ 244 (489)
T ss_pred HHHHHHHHHHHHHHHcCCCCCCCCccccCCCCCCCCcccHHHHHHHHHHHHHHHccHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 76555544322 1 11 112232111 11234444432 23699999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCccc--------ccccHHHHHHHHhcchhHHHHHHHHHHHHhHHHHHHHhhhhhHHHH
Q 012131 242 ALILVVFAYFFPLLIGTGAAPVHREL--------WSDGYFSVIAKLIGGVWLRTWIQGASAVSNMGMFIAEMSSDSFQLL 313 (470)
Q Consensus 242 ~~~~~~~~y~l~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~ 313 (470)
++..+.++|++.........|.++.+ ...+|+.+..++.+.+....++.+.++++.+++.++.+++.||++|
T Consensus 245 ~~~~v~~~Yvl~~~~~~~~vp~~~~~~~~~~~~~~~~sp~~~~~~~~g~~~~~~ii~~~il~a~~~~~n~~~~~~sR~l~ 324 (489)
T PRK10836 245 VFWRILLFYVFAILIISLIIPYTDPSLLRNDVKDISVSPFTLVFQHAGLLSAAAVMNAVILTAVLSAGNSGMYASTRMLY 324 (489)
T ss_pred HHHHHHHHHHHHHHHHheecCCCChhhhccccccccCCcHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999888888765422 1246888888888777788888999999999999999999999999
Q ss_pred hhhhcCCCchhhhhcCCCCCChHHHHHHHHHHHHHHHH-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----C
Q 012131 314 GMAERGMLPEIFARRSQYGTPLVGILFSASGVILLSWL-------SFQEIVAAENFLYCFAMIMEFIAFVKLRMQ----Y 382 (470)
Q Consensus 314 ~~a~d~~lP~~~~~~~r~~~P~~ai~~~~~~~~~~~~~-------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~----~ 382 (470)
+|||||.+|++|+|+||+++|++|++++.+++++..+. .++.+.+++++...+.|+...++++++||+ +
T Consensus 325 a~Ardg~lP~~~~kv~~~~~P~~All~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~a~l~~R~~~~~~~ 404 (489)
T PRK10836 325 TLACDGKAPRIFAKLSRGGVPRNALYATTVIAGLCFLTSMFGNQTVYLWLLNTSGMTGFIAWLGIAISHYRFRRGYVLQG 404 (489)
T ss_pred HHHcCCCcCHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999988765543 145678888889999999999999999986 4
Q ss_pred CCCC-CCcccCCchhhHHHhhhhhHHHHH
Q 012131 383 PEAI-RPYKVPLGTVGAILLCIPPTLLIL 410 (470)
Q Consensus 383 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 410 (470)
|+.+ ||||.|.++.... .+++..+++.
T Consensus 405 ~~~~~~p~~~p~~p~~~~-~~~~~~~~~~ 432 (489)
T PRK10836 405 HDLNDLPYRSGFFPLGPI-FAFVLCLIIT 432 (489)
T ss_pred CCcCCCCCcCCCccHHHH-HHHHHHHHHH
Confidence 5654 7999999844433 3333333333
|
|
| >PRK10435 cadB lysine/cadaverine antiporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-52 Score=420.58 Aligned_cols=411 Identities=17% Similarity=0.251 Sum_probs=324.0
Q ss_pred ccccccchhhHHHhHhhhhcc-cccchhhHHhhhChHHHHHHHHHHHHHHHHHHHHHHHHhhccCccCCchhHhHHHhhC
Q 012131 20 ERFQKVSVIPLVFLIFYEVSG-GPFGVEDSVMAAGPLLALIGFLFFPFIWSIPEALITAEMGTMFPENGGYVVWVASALG 98 (470)
Q Consensus 20 ~~~r~l~~~~~~~~~~~~v~g-g~~~~~~~~~~~g~~~~~~~~ii~~~~~~~~~al~~~el~~~~p~~GG~y~~~~~~~g 98 (470)
+++|+++++++.++.+|+++| |++..|..+..+||. .+++|+++++. .++.+++++||++++|++||.|.|++| +|
T Consensus 2 ~~~~~lg~~~~~~l~vg~~IGsGif~lp~~~a~~G~~-~i~~wli~~~~-~l~~al~~aEL~s~~P~~GG~y~y~~~-~g 78 (435)
T PRK10435 2 SSAKKIGLFACTGVVAGNMMGSGIALLPANLASIGSI-AIWGWIISIIG-AMSLAYVYARLATKNPQQGGPIAYAGE-IS 78 (435)
T ss_pred CCCCcCCHHHHHHHHHhhHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHH-HHHHHHHHHHHHhhCCCCCChhHHHHH-HC
Confidence 478999999999999999989 999999888888885 78999999996 889999999999999999999999999 89
Q ss_pred ChHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 012131 99 PHWGFQQGWMKWLSGVIDNALYPVLFLDYLKSAIPALEGGFPRIVAVLLLTTALTYMNYRGLTIVGWVAIVLGVFSLVPF 178 (470)
Q Consensus 99 ~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~i~~~~~i~~~ 178 (470)
|.+||.+||.||........+.......|+..++|...++.+..++++++++++..+|.+|+|..++++.+..+++++.+
T Consensus 79 ~~~gf~~gw~~~~~~~~~~~~~~~~~~~y~~~~~p~~~~~~~~~~~~~~i~~~~~~ln~~gvk~~~~i~~i~~~~~li~~ 158 (435)
T PRK10435 79 PAFGFQTGVLYYHANWIGNLAIGITAVSYLSTFFPVLNDPIPAGIACIAIVWVFTFVNMLGGTWVSRLTTIGLVLVLIPV 158 (435)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999987666666777777789988888655555556667777888999999999999999998888777666
Q ss_pred HHHHHHHhhccCCCcccc-c-cccccchHHHH---HHHHhhhhhHHHhhhhhccccCCCCchhHHHHHHHHHHHHHHHHH
Q 012131 179 ALMGLIAIPRLKPWRWCM-V-DLKNVNWGLYL---NTLFWNLNYWDSISTLVGEVEDPGKTLPRALFYALILVVFAYFFP 253 (470)
Q Consensus 179 ~~~~i~~~~~~~~~~~~~-~-~~~~~~~~~~~---~~~~~~~~G~e~~~~~~~E~k~P~k~ip~ai~~~~~~~~~~y~l~ 253 (470)
+.+.+.+..+.+++++.. . +..+.++.+++ ...+|+|.|+|.+++++||+|||+||+||+++.+..++.++|++.
T Consensus 159 ~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~faf~G~E~~~~~a~E~knP~r~iPrAi~~~~~iv~ilYil~ 238 (435)
T PRK10435 159 VGTAIVGWHWFDAATYAANWNTSDTTDGHAIIKSILLCLWAFVGVESAAVSTGMVKNPKRTVPLATMLGTGLAGIIYIAA 238 (435)
T ss_pred HHHHHHHHHHcCHHhhcccccCCCCchHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCccccccHHHHHHHHHHHHHHHHH
Confidence 655555444333332111 0 11122333433 445899999999999999999999999999999999999999999
Q ss_pred HHHHHhccCCCcccccccHHHHHHHHhcchhHHHHHHHHHHHHhHHHHHHHhhhhhHHHHhhhhcCCCchhhhhcCCCCC
Q 012131 254 LLIGTGAAPVHRELWSDGYFSVIAKLIGGVWLRTWIQGASAVSNMGMFIAEMSSDSFQLLGMAERGMLPEIFARRSQYGT 333 (470)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~~~~~~~r~~~ 333 (470)
.+...+..|.++...+++|+.+..++.++++...++.+.++++.+++.++++...+|..++++|||.+||+|+|+||+++
T Consensus 239 ~~~~~~~~p~~~~~~~~~p~~~~~~~~~g~~~~~~i~~~~~i~~l~~~~~~~~~~~r~~~~~ardG~lP~~f~k~nk~g~ 318 (435)
T PRK10435 239 TQVISGMFPASVMAASGAPFAISASTILGNWAAPLVSAFTAFACLTSLGSWMMLVGQAGVRAANDGNFPKVYGEVDKNGI 318 (435)
T ss_pred HHHHHhcCCHHHHhcCCCcHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHhhCcCCC
Confidence 99999999999887788899999888888888888888889999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHHH----H---------HhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCcccCCchhhHHH
Q 012131 334 PLVGILFSASGVILLS----W---------LSFQEIVAAENFLYCFAMIMEFIAFVKLRMQYPEAIRPYKVPLGTVGAIL 400 (470)
Q Consensus 334 P~~ai~~~~~~~~~~~----~---------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (470)
|++|++++.++..++. + ..++.+.++.+....+.|++..++++++|+ ++.++++ ..+
T Consensus 319 P~~Al~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~y~~~~~~~ir~~~--~~~~~~~--------~~~ 388 (435)
T PRK10435 319 PKKGLLLAAVKMTALMILITLMNSSGGKASDLFGELTGIAVLLTMLPYFYSCVDLIRFEG--VNIRNFV--------SLI 388 (435)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CchhHHH--------HHH
Confidence 9999999877664322 1 136778999999999999999999886543 2222221 123
Q ss_pred hhhhhHHHHHHHHHhccchHHHHHHHHHHHhhhhHHHHHHHhhcc
Q 012131 401 LCIPPTLLILVVLALASPKVMAISVIAVLIGFFIQPCMTYAEKRQ 445 (470)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 445 (470)
.+.+..+++.+......+ ..+.....+.+..++.+.+|+.+|+
T Consensus 389 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (435)
T PRK10435 389 CSVLGCVFCFIALMGASS--FELAGTFIVSLIILMFYARKMHERQ 431 (435)
T ss_pred HHHHHHHHHHHHHHHhhH--HHHHHHHHHHHHHHHHHHHHhcchh
Confidence 344455555555553333 3334444444444444444444444
|
|
| >TIGR00911 2A0308 L-type amino acid transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-52 Score=426.12 Aligned_cols=414 Identities=20% Similarity=0.260 Sum_probs=320.2
Q ss_pred cccccccchhhHHHhHhhhhcc-cccchhhH-HhhhChHH-HHHHHHHHHHHHHHHHHHHHHHhhccCccCCchhHhHHH
Q 012131 19 LERFQKVSVIPLVFLIFYEVSG-GPFGVEDS-VMAAGPLL-ALIGFLFFPFIWSIPEALITAEMGTMFPENGGYVVWVAS 95 (470)
Q Consensus 19 ~~~~r~l~~~~~~~~~~~~v~g-g~~~~~~~-~~~~g~~~-~~~~~ii~~~~~~~~~al~~~el~~~~p~~GG~y~~~~~ 95 (470)
++++|+++.+++.+++++.++| |++..+.. +..+||.+ .+++|++++++ .++.+++|+||++++|++||.|+|+++
T Consensus 38 ~~l~r~l~~~~~~~l~vg~iiGsGif~~~~~~~~~~G~~g~~~~~~ii~~i~-~~~~al~~aELas~~P~sGG~y~~~~~ 116 (501)
T TIGR00911 38 VALKKEITLLSGVGIIVGTIIGSGIFVSPKGVLKNAGSVGLALIMWAVCGIF-SIVGALVYAELGTTIPKSGGEYNYILE 116 (501)
T ss_pred cccCccccHhHhhHhheeceEEeeEeecHHHHHhhCCChHHHHHHHHHHHHH-HHHHHHHHHHHHhhcCCCCchhhhHHh
Confidence 4588999999999999999888 78877665 44567643 45788888875 899999999999999999999999999
Q ss_pred hhCChHHHHHHHHHHH-HHhhhHHHHHHHHHHHHHH-hccccC-CchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 012131 96 ALGPHWGFQQGWMKWL-SGVIDNALYPVLFLDYLKS-AIPALE-GGFPRIVAVLLLTTALTYMNYRGLTIVGWVAIVLGV 172 (470)
Q Consensus 96 ~~g~~~g~~~g~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~i~~~ 172 (470)
.+||.+||+.+|.+++ .+....+..+..+++|+.. .++... +.+...+++++++++...+|++|+|..+|++.+...
T Consensus 117 ~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~~~~~~~~~~i~~~~i~~~~~ln~~Gvk~~~~~~~i~~~ 196 (501)
T TIGR00911 117 VFGPLLAFLRLWIELLVIRPGSQAVNALNFAIYILTPVFPDCEVPEWAIRLVAVLCVLLLTLVNCLSVKWATRVQDIFTA 196 (501)
T ss_pred HhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 9999999999998876 3445566677777777643 444332 234456777788889999999999999999999999
Q ss_pred HHHHHHHHHHHHHhh---ccCCCcccc---ccccccc---hHHHHHHHHhhhhhHHHhhhhhccccCCCCchhHHHHHHH
Q 012131 173 FSLVPFALMGLIAIP---RLKPWRWCM---VDLKNVN---WGLYLNTLFWNLNYWDSISTLVGEVEDPGKTLPRALFYAL 243 (470)
Q Consensus 173 ~~i~~~~~~~i~~~~---~~~~~~~~~---~~~~~~~---~~~~~~~~~~~~~G~e~~~~~~~E~k~P~k~ip~ai~~~~ 243 (470)
++++.++++.+.++. +.+.++..+ ++....+ +...+...+|+|.|+|.+++++||+|||+|++||+++.+.
T Consensus 197 ~~l~~l~~~ii~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~a~~~~~~af~G~e~~~~~a~E~knP~r~iPrAi~~s~ 276 (501)
T TIGR00911 197 CKLLALLLIIITGWVQLGKGGVESLNPKNAFEGTETSAGGIVLAFYSGIWAYGGWNYLNFVTEEVKNPYRTLPIAIIISM 276 (501)
T ss_pred HHHHHHHHHHHHHHHHhcCCCccccCcccccCCCCCcHHHHHHHHHHHHHHHHhHHHHhhhHHHhcCchhhhHHHHHHHH
Confidence 998877766655432 222111111 1111122 3333445589999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhccCCCcccccccHHHHHHHHhcchhHHHHHHHHHHHHhHHHHHHHhhhhhHHHHhhhhcCCCch
Q 012131 244 ILVVFAYFFPLLIGTGAAPVHRELWSDGYFSVIAKLIGGVWLRTWIQGASAVSNMGMFIAEMSSDSFQLLGMAERGMLPE 323 (470)
Q Consensus 244 ~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~ 323 (470)
.+++++|++..++.....|.++...++.+.....+...+ ....++.+...++.+++.++.+.+.||.++++||||.+|+
T Consensus 277 ~~v~~~Y~l~~~a~~~~~~~~~l~~~~~~~~~~~~~~~g-~~~~~i~~~~~is~~~~~~~~~~~~sR~l~a~ardg~lP~ 355 (501)
T TIGR00911 277 PIVTFIYVLTNIAYFTVLSPEELLASLAVAVDFGERLLG-VMSWAMPALVGLSCFGSVNGSLFSSSRLFFVGGREGHLPS 355 (501)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHhcChHHHHHHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccH
Confidence 999999999999988888887765544333344444444 4556777888889999999999999999999999999999
Q ss_pred hhhhcC-CCCCChHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCcccCCchhhHHHh
Q 012131 324 IFARRS-QYGTPLVGILFSASGVILLSWL-SFQEIVAAENFLYCFAMIMEFIAFVKLRMQYPEAIRPYKVPLGTVGAILL 401 (470)
Q Consensus 324 ~~~~~~-r~~~P~~ai~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (470)
+|+|+| |+++|++|+++.++++++.... +...+.++.++...+.|.+..++.+++|+|+|+.+||||.|...+. .
T Consensus 356 ~~~~v~~~~~~P~~all~~~~i~~l~~~~~~~~~l~~~~~~~~~i~y~l~~~a~i~lR~~~p~~~rp~r~p~~~~~---l 432 (501)
T TIGR00911 356 LLSMIHVKRLTPLPSLLIVCTLTLLMLFSGDIYSLINLISFANWLFNALAVAGLLWLRYKRPEMNRPIKVPLFFPV---F 432 (501)
T ss_pred HHHHhcCCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHheeccCCCCCCCccCchHHHH---H
Confidence 999999 8999999999998887655433 4666777888888899999999999999999999999999874232 2
Q ss_pred hhhhHHHHHHHHHhccchHHHHHHHHHHHhhhhHHH
Q 012131 402 CIPPTLLILVVLALASPKVMAISVIAVLIGFFIQPC 437 (470)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 437 (470)
.++..+++.......++........+.++|...|..
T Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~ 468 (501)
T TIGR00911 433 FLLSCLFLIILSLYSPPVGCGVGFIIMLTGVPVYFF 468 (501)
T ss_pred HHHHHHHHhhhhhccCchhhHHHHHHHHHHHHHHHH
Confidence 233333333334444555556677788888888875
|
|
| >PRK10238 aromatic amino acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-52 Score=417.67 Aligned_cols=388 Identities=17% Similarity=0.244 Sum_probs=316.9
Q ss_pred cccccccchhhHHHhHhhhhcc-cccchhh-HHhhhChHHHHHHHHHHHHHHHHHHHHHHHHhhccCccCCchhHhHHHh
Q 012131 19 LERFQKVSVIPLVFLIFYEVSG-GPFGVED-SVMAAGPLLALIGFLFFPFIWSIPEALITAEMGTMFPENGGYVVWVASA 96 (470)
Q Consensus 19 ~~~~r~l~~~~~~~~~~~~v~g-g~~~~~~-~~~~~g~~~~~~~~ii~~~~~~~~~al~~~el~~~~p~~GG~y~~~~~~ 96 (470)
+++||+++.++..++++|.++| |+|..+. .+..+|| ..+++|++++++ .++.+++++|+++++|.+||.|+|+++.
T Consensus 8 ~~l~r~L~~~~~~~i~ig~~IGsGif~~~g~~~~~~Gp-~~i~~~~i~gi~-~~~v~~s~aEl~s~~P~aGg~y~~~~~~ 85 (456)
T PRK10238 8 EQLKRGLKNRHIQLIALGGAIGTGLFLGSASVIQSAGP-GIILGYAIAGFI-AFLIMRQLGEMVVEEPVAGSFSHFAYKY 85 (456)
T ss_pred hhhhccCcHHHHHHHHhhccccchHHHhhHHHHHhcCc-HHHHHHHHHHHH-HHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 3589999999999999999989 7777654 4556888 578999999996 8888999999999999999999999999
Q ss_pred hCChHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 012131 97 LGPHWGFQQGWMKWLSGVIDNALYPVLFLDYLKSAIPALEGGFPRIVAVLLLTTALTYMNYRGLTIVGWVAIVLGVFSLV 176 (470)
Q Consensus 97 ~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~i~~~~~i~ 176 (470)
+||..||.+||.+++.+....++....++++++.++|. .+.+....+++++...+|++|+|..++++.+...++++
T Consensus 86 ~g~~~gf~~Gw~~~~~~~~~~~~~~~~~~~~~~~~~p~----~~~~~~~~i~~~~~~~lN~~gv~~~~~~~~~~~~iki~ 161 (456)
T PRK10238 86 WGSFAGFASGWNYWVLYVLVAMAELTAVGKYIQFWYPE----IPTWVSAAVFFVVINAINLTNVKVFGEMEFWFAIIKVI 161 (456)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc----CcHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998899999887764 34555666777889999999999999999999998887
Q ss_pred HHHHHHHHHh---hcc--CC-Ccccc----ccccccchHHH---HHHHHhhhhhHHHhhhhhccccCCCCchhHHHHHHH
Q 012131 177 PFALMGLIAI---PRL--KP-WRWCM----VDLKNVNWGLY---LNTLFWNLNYWDSISTLVGEVEDPGKTLPRALFYAL 243 (470)
Q Consensus 177 ~~~~~~i~~~---~~~--~~-~~~~~----~~~~~~~~~~~---~~~~~~~~~G~e~~~~~~~E~k~P~k~ip~ai~~~~ 243 (470)
.++++.+.++ ... ++ ..+.+ .+..+.++.+. +...+|+|.|+|.+++++||+|||+|++||++..+.
T Consensus 162 ~i~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~af~G~e~~~~~aeE~knP~r~iPrAi~~~~ 241 (456)
T PRK10238 162 AVVAMIIFGGWLLFSGNGGPQATVSNLWDQGGFLPHGFTGLVMMMAIIMFSFGGLELVGITAAEADNPEQSIPKATNQVI 241 (456)
T ss_pred HHHHHHHHHHHHHHcCCCCCCccccccCCCCCCccccHHHHHHHHHHHHHHhcCHHHHHHHHHhhcChhhHHHHHHHHHH
Confidence 6655444221 211 11 11111 11113344433 334579999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhccCCCcccccccHHHHHHHHhcchhHHHHHHHHHHHHhHHHHHHHhhhhhHHHHhhhhcCCCch
Q 012131 244 ILVVFAYFFPLLIGTGAAPVHRELWSDGYFSVIAKLIGGVWLRTWIQGASAVSNMGMFIAEMSSDSFQLLGMAERGMLPE 323 (470)
Q Consensus 244 ~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~ 323 (470)
..+.++|+..........|.++...+++|+.++.++.+.+....++.+..+++.+++.++.+.+.||.+|+|||||.+|+
T Consensus 242 ~~i~~~y~~~~~~~~~~~p~~~l~~~~sP~~~~~~~~g~~~~~~i~~~~i~~~~~s~~~~~~~~~sR~l~a~ardg~lP~ 321 (456)
T PRK10238 242 YRILIFYIGSLAVLLSLMPWTRVTADTSPFVLIFHELGDTFVANALNIVVLTAALSVYNSCVYCNSRMLFGLAQQGNAPK 321 (456)
T ss_pred HHHHHHHHHHHHHHheecChhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccH
Confidence 99999999988887778888887777789999888888888888888999999999999999999999999999999999
Q ss_pred hhhhcCCCCCChHHHHHHHHHHHHHHHH-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC--CCCcccCCc
Q 012131 324 IFARRSQYGTPLVGILFSASGVILLSWL-------SFQEIVAAENFLYCFAMIMEFIAFVKLRMQYPEA--IRPYKVPLG 394 (470)
Q Consensus 324 ~~~~~~r~~~P~~ai~~~~~~~~~~~~~-------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 394 (470)
+|+|+||+++|++|++++.+++++..+. .++.+.++++....+.|.+..++++++||++++. +++|+.|.+
T Consensus 322 ~f~kv~~~~~P~~Ail~~~~i~~l~~l~~~~~~~~~f~~l~~~~~~~~~i~y~~~~~~~l~~r~~~~~~~~~~~~~~~~~ 401 (456)
T PRK10238 322 ALASVDKRGVPVNTILVSALVTALCVLINYLAPESAFGLLMALVVSALVINWAMISLAHMKFRRAKQEQGVVTRFPALLY 401 (456)
T ss_pred HHHhhCcCCCcHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcCCCc
Confidence 9999998899999999999988655443 2678899999999999999999999999987653 456777666
Q ss_pred hhhHHHhhhhhHHHHHHHH
Q 012131 395 TVGAILLCIPPTLLILVVL 413 (470)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~ 413 (470)
++. .+.++....++....
T Consensus 402 p~~-~~~~~~~~~~~~~~~ 419 (456)
T PRK10238 402 PLG-NWICLLFMAAVLVIM 419 (456)
T ss_pred cHH-HHHHHHHHHHHHHHH
Confidence 444 444444444444333
|
|
| >TIGR01773 GABAperm gamma-aminobutyrate permease | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-52 Score=418.59 Aligned_cols=416 Identities=18% Similarity=0.236 Sum_probs=323.0
Q ss_pred CcccccccccchhhHHHhHhhhhcc-cccchh-hHHhhhChHHHHHHHHHHHHHHHHHHHHHHHHhhccCccCCchhHhH
Q 012131 16 SPKLERFQKVSVIPLVFLIFYEVSG-GPFGVE-DSVMAAGPLLALIGFLFFPFIWSIPEALITAEMGTMFPENGGYVVWV 93 (470)
Q Consensus 16 ~~~~~~~r~l~~~~~~~~~~~~v~g-g~~~~~-~~~~~~g~~~~~~~~ii~~~~~~~~~al~~~el~~~~p~~GG~y~~~ 93 (470)
+.+.++||+++.+++.++.++.++| |+|..+ ..+..+||. .+++|++++++ .++.+++++||++++|++||.|.|+
T Consensus 5 ~~~~~~~~~L~~~~~~~i~ig~~IGsGif~~~g~~~~~~G~~-~~i~~~i~~v~-~~~~a~~~aEl~s~~P~~Gg~~~~~ 82 (452)
T TIGR01773 5 QSGLKLPNGLKTRHVTMLSIAGVIGAGLFVGSGSAIASAGPA-ALLAYLLAGLL-VVFIMRMLGEMAVANPDTGSFSTYA 82 (452)
T ss_pred cchHhHhCcCcHHHHHHHHHhhhhhchHHHhhHHHHHhcCCH-HHHHHHHHHHH-HHHHHHHHHHHHHhcCCCCCHHHHH
Confidence 3355689999999999999999988 788776 456668885 66899999986 7889999999999999999999999
Q ss_pred HHhhCChHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 012131 94 ASALGPHWGFQQGWMKWLSGVIDNALYPVLFLDYLKSAIPALEGGFPRIVAVLLLTTALTYMNYRGLTIVGWVAIVLGVF 173 (470)
Q Consensus 94 ~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~i~~~~ 173 (470)
++.+||.+||.+||.+|++++...++.+...+++++.++|. .+.+..+.+++++...+|.+|+|..++++.+..++
T Consensus 83 ~~~~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~~~~~~n~~gv~~~~~~~~~~~~~ 158 (452)
T TIGR01773 83 DDAIGRWAGFTIGWLYWWFWVLVIPLEAIAAAGILQYWFPD----IPLWLFSLILTIVLTLTNLYSVKSYGEFEFWFALI 158 (452)
T ss_pred HHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc----CcHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence 99999999999999999999999999999999999888764 35567777888889999999999999999998888
Q ss_pred HHHHHHHHHHHHh---hccCC----Cccccc----cccccchHHHH---HHHHhhhhhHHHhhhhhccccCCCCchhHHH
Q 012131 174 SLVPFALMGLIAI---PRLKP----WRWCMV----DLKNVNWGLYL---NTLFWNLNYWDSISTLVGEVEDPGKTLPRAL 239 (470)
Q Consensus 174 ~i~~~~~~~i~~~---~~~~~----~~~~~~----~~~~~~~~~~~---~~~~~~~~G~e~~~~~~~E~k~P~k~ip~ai 239 (470)
+++.++++.+.++ ...++ .++.+. +..+.++.+++ ...+|+|.|+|.+++++||+|||+||+||++
T Consensus 159 ki~~l~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~~~~af~G~e~~~~~a~E~k~P~r~iPrAi 238 (452)
T TIGR01773 159 KVIAIIAFIILGAVAIFGFAPGSEVSGFSNLTGKGGFFPNGIGAVLLAILVTMFSFMGTEIVTIAAAESSNPIKSITRAT 238 (452)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCCccccccCCCCcCcccHHHHHHHHHHHHHHhccHHHHhHHHHhhcChhhHHHHHH
Confidence 8777655544332 11111 111111 11123443333 4457999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCcccccc-cHHHHHHHHhcchhHHHHHHHHHHHHhHHHHHHHhhhhhHHHHhhhhc
Q 012131 240 FYALILVVFAYFFPLLIGTGAAPVHRELWSD-GYFSVIAKLIGGVWLRTWIQGASAVSNMGMFIAEMSSDSFQLLGMAER 318 (470)
Q Consensus 240 ~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d 318 (470)
..+...+.++|++.........|.++....+ +|+.++.+..+++....++.+.++++.+++.++.+.+.||.+++||||
T Consensus 239 ~~~~~~~~~~y~l~~~~~~~~~p~~~~~~~~~~p~~~~~~~~g~~~~~~ii~~~~~~~~~~~~~~~~~~~sR~~~a~ard 318 (452)
T TIGR01773 239 NSVIWRIIVFYLGSIFIVVALLPWNSPNLLEVGSYVAVLELLGIPHAKLIMDFVVLTAVLSCLNSALYTTSRMLYSLAER 318 (452)
T ss_pred HHHHHHHHHHHHHHHHHHeeEeCCCCcccccCCcHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999888777777766544333 478777778888888888888889999999999999999999999999
Q ss_pred CCCchhhhhcCCCCCChHHHHHHHHHHHHHHHH-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCcc-
Q 012131 319 GMLPEIFARRSQYGTPLVGILFSASGVILLSWL-------SFQEIVAAENFLYCFAMIMEFIAFVKLRMQYPEAIRPYK- 390 (470)
Q Consensus 319 ~~lP~~~~~~~r~~~P~~ai~~~~~~~~~~~~~-------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 390 (470)
|.+|++|+|+||+++|++|+++..+++++..+. .++.+.+..+....+.|.+..++++++|+++|+.+|||+
T Consensus 319 g~lP~~~~~v~~~~~P~~Ail~~~~~~~~~~l~~~~~~~~~f~~l~~~~~~~~~~~y~~~~~~~i~~r~~~~~~~~~~~~ 398 (452)
T TIGR01773 319 GDAPRVFMKLNKKGVPVQAVLASTFFSFLTVVVNYFAPDKVFLFLVNSSGAIALLVYLVIAVSQLRMRKKLKANGEAIKI 398 (452)
T ss_pred CCcCHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc
Confidence 999999999999999999999998888755433 145677888888889999999999999998877666654
Q ss_pred -cCCchhhHHHhhhhhHHHHHHHH-Hhccc-hHHHHHHHHHHHhhhhHHHH
Q 012131 391 -VPLGTVGAILLCIPPTLLILVVL-ALASP-KVMAISVIAVLIGFFIQPCM 438 (470)
Q Consensus 391 -~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~g~~~~~~~ 438 (470)
.+.+++.... ++....+..... ..++. ........+.+.....|..+
T Consensus 399 ~~~~~p~~~~~-~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~y~~~ 448 (452)
T TIGR01773 399 RMWLYPWLTWL-VIIFICGILVSMLFIPSMRDEVLLTGLLTIIVLCSYLVF 448 (452)
T ss_pred cCCCccHHHHH-HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHh
Confidence 4444443333 333333333333 23433 33444444444444444443
|
GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity. |
| >TIGR00909 2A0306 amino acid transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-52 Score=416.14 Aligned_cols=409 Identities=22% Similarity=0.330 Sum_probs=344.2
Q ss_pred cccccchhhHHHhHhhhhcc-cccchhhHHhh-hChHHHHHHHHHHHHHHHHHHHHHHHHhhccCccCCchhHhHHHhhC
Q 012131 21 RFQKVSVIPLVFLIFYEVSG-GPFGVEDSVMA-AGPLLALIGFLFFPFIWSIPEALITAEMGTMFPENGGYVVWVASALG 98 (470)
Q Consensus 21 ~~r~l~~~~~~~~~~~~v~g-g~~~~~~~~~~-~g~~~~~~~~ii~~~~~~~~~al~~~el~~~~p~~GG~y~~~~~~~g 98 (470)
.+|+++.++..++.++.++| |++..+..... +||. .+++|++++++ .++.+++++|+++++|++||.|.|+++.+|
T Consensus 1 l~r~l~~~~~~~~~i~~~ig~gi~~~~~~~~~~~G~~-~~l~~li~~~~-~~~~a~~~~el~~~~p~~Gg~y~~~~~~~G 78 (429)
T TIGR00909 1 LSRELGLFDLTMLGIGAMIGTGIFVVTGIAAGKAGPA-VILSFVLAGLT-ALFIALVYAELAAMLPVAGSPYTYAYEAMG 78 (429)
T ss_pred CCccccHHHHHHHHHhhhhcchHHHhHHHHHHHcCCH-HHHHHHHHHHH-HHHHHHHHHHHHhhcCCCCcceeeHHHHhC
Confidence 47899999999999999988 77777665543 6774 66899999886 778899999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccccCCchHHH------------HHHHHHHHHHHHHHhhhhHHHHHH
Q 012131 99 PHWGFQQGWMKWLSGVIDNALYPVLFLDYLKSAIPALEGGFPRI------------VAVLLLTTALTYMNYRGLTIVGWV 166 (470)
Q Consensus 99 ~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~n~~g~~~~~~~ 166 (470)
|..|++.+|.+++.+....+..+..+++++..+++..+.+.+.. ...+++++++..+|++|+|..+|+
T Consensus 79 ~~~g~~~gw~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~g~~~~~~~ 158 (429)
T TIGR00909 79 ELTAFIIGWSLWLEYGVAVAAVAVGWGGYLQEFLPGVGLDLPAVLTAKPGNGGVFNLPALLIVLFLTYILYLGAKESGKV 158 (429)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhhhcCCcccccccHHHHHHHHHHHHHHHhCcHHHHHH
Confidence 99999999999999999999999999999988876321111111 345677888999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCccccccccccchHH---HHHHHHhhhhhHHHhhhhhccccCCCCchhHHHHHHH
Q 012131 167 AIVLGVFSLVPFALMGLIAIPRLKPWRWCMVDLKNVNWGL---YLNTLFWNLNYWDSISTLVGEVEDPGKTLPRALFYAL 243 (470)
Q Consensus 167 ~~i~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~G~e~~~~~~~E~k~P~k~ip~ai~~~~ 243 (470)
+.++..++++.++++.+.+..+.+.+++.+.. +.++.+ .+...+|+|.|+|.+++++||+|||+|++||+++.+.
T Consensus 159 ~~v~~~~~i~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~af~G~e~~~~~~~E~~~p~r~ip~ai~~~~ 236 (429)
T TIGR00909 159 NDILVVLKVAALLLFAALGAIHFASNNYTPFM--PMGFGGVGAATALVFFAFIGFEAISTAAEEVKNPERDIPKAIILSL 236 (429)
T ss_pred HHHHHHHHHHHHHHhhhHHHhhCcHHhcCCCC--CCcHHHHHHHHHHHHHHHhhHHHHHhhHHhccCccccccHHHHHHH
Confidence 99999999988877766666665555554332 223333 3344579999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhccCCCcccccccHHHHHHHHhcchhHHHHHHHHHHHHhHHHHHHHhhhhhHHHHhhhhcCCCch
Q 012131 244 ILVVFAYFFPLLIGTGAAPVHRELWSDGYFSVIAKLIGGVWLRTWIQGASAVSNMGMFIAEMSSDSFQLLGMAERGMLPE 323 (470)
Q Consensus 244 ~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~ 323 (470)
.++.++|++.........|.++...+++|+.++.++.+++++..++.+..+++.+++.++++.+.+|.+++++|||.+|+
T Consensus 237 ~~~~v~Yil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~~~~~a~dg~lP~ 316 (429)
T TIGR00909 237 IVVTLLYVLVAAVILGAVPWRQLAGSTAPLSLVGYDLGQGIGGLILTAGAVFSIASVMLAGIYGTSRVLFAMSRDGLLPG 316 (429)
T ss_pred HHHHHHHHHHHHHHhcCcCHHHhCCCCcHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcH
Confidence 99999999999999888888887777889888888888898889999999999999999999999999999999999999
Q ss_pred hhhhcC-CCCCChHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCcccCCchhhHHHh
Q 012131 324 IFARRS-QYGTPLVGILFSASGVILLSWL-SFQEIVAAENFLYCFAMIMEFIAFVKLRMQYPEAIRPYKVPLGTVGAILL 401 (470)
Q Consensus 324 ~~~~~~-r~~~P~~ai~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (470)
+|+|+| |+++|++|+++..++++++... +++.+.++.++...+.|.+.+++.+++|||+|+.+||||.|..+...
T Consensus 317 ~~~~~~~~~~~P~~a~~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~a~~~lr~~~~~~~~~~~~~~~~~~~--- 393 (429)
T TIGR00909 317 SLSKVHPKTGTPHMSIIIFSLTAALLASLVPLEGLAELTSIGTLIAFAAVNVAVIILRRRRPDIQRAFRCPLVPVLP--- 393 (429)
T ss_pred HHHHcCCCCCCcHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcchHHH---
Confidence 999999 8999999999999888766543 68889999999999999999999999999999999999998764332
Q ss_pred hhhhHHHHHHHHHhccchHHHHHHHHHHHhhhhHHH
Q 012131 402 CIPPTLLILVVLALASPKVMAISVIAVLIGFFIQPC 437 (470)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 437 (470)
.+......+.....+++.......+.++|...|..
T Consensus 394 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~ 428 (429)
T TIGR00909 394 -VLVVSYCIYLLLNLGPGTTVWFLVWMLLGSVFYFI 428 (429)
T ss_pred -HHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHc
Confidence 22223333444556778888999999999998864
|
|
| >PRK10580 proY putative proline-specific permease; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-51 Score=415.13 Aligned_cols=413 Identities=18% Similarity=0.271 Sum_probs=322.2
Q ss_pred ccccccchhhHHHhHhhhhcc-cccchhhH-HhhhChHHHHHHHHHHHHHHHHHHHHHHHHhhccCccCCchhHhHHHhh
Q 012131 20 ERFQKVSVIPLVFLIFYEVSG-GPFGVEDS-VMAAGPLLALIGFLFFPFIWSIPEALITAEMGTMFPENGGYVVWVASAL 97 (470)
Q Consensus 20 ~~~r~l~~~~~~~~~~~~v~g-g~~~~~~~-~~~~g~~~~~~~~ii~~~~~~~~~al~~~el~~~~p~~GG~y~~~~~~~ 97 (470)
++||+++.+++.++++|.++| |++..+.. +..+||. .+++|++++++ .++.+++++|+++++|++||.|.|+++.+
T Consensus 6 ~l~r~L~~~~~~~i~vg~~IG~Gif~~~g~~~~~aG~~-~~l~~~i~~i~-~~~~a~~~aEl~s~~P~~Gg~y~y~~~~~ 83 (457)
T PRK10580 6 KLKRGLSTRHIRFMALGSAIGTGLFYGSADAIKMAGPS-VLLAYIIGGVA-AYIIMRALGEMSVHNPAASSFSRYAQENL 83 (457)
T ss_pred cccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhChH-HHHHHHHHHHH-HHHHHHHHHHHHHHcCCCCCHHHHHHHHc
Confidence 488999999999999999988 78776554 5568884 68999999986 88889999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 012131 98 GPHWGFQQGWMKWLSGVIDNALYPVLFLDYLKSAIPALEGGFPRIVAVLLLTTALTYMNYRGLTIVGWVAIVLGVFSLVP 177 (470)
Q Consensus 98 g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~i~~~~~i~~ 177 (470)
||.+||++||.+++.+....+.....++.|...++|.. +.+.+.++++++...+|++|+|..+++|.++..++++.
T Consensus 84 G~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~~~ln~~gv~~~~~~~~~~~~~~~~~ 159 (457)
T PRK10580 84 GPLAGYITGWTYCFEILIVAIADVTAFGIYMGVWFPTV----PHWIWVLSVVLIICAVNLMSVKVFGELEFWFSFFKVAT 159 (457)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC----ChHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHH
Confidence 99999999999999998888887888888888776642 33445556677889999999999999999988888776
Q ss_pred HHHHHHHHh----hc----cCCCc----cccccccccchHHHH---HHHHhhhhhHHHhhhhhccccCCCCchhHHHHHH
Q 012131 178 FALMGLIAI----PR----LKPWR----WCMVDLKNVNWGLYL---NTLFWNLNYWDSISTLVGEVEDPGKTLPRALFYA 242 (470)
Q Consensus 178 ~~~~~i~~~----~~----~~~~~----~~~~~~~~~~~~~~~---~~~~~~~~G~e~~~~~~~E~k~P~k~ip~ai~~~ 242 (470)
++++.+.++ .. .++.+ +.+.+..+.++.+.+ ...+|+|.|+|.+++++||+|||+|++||+++.+
T Consensus 160 l~~~ii~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~fsf~G~e~~~~~a~E~knP~k~iPrAi~~~ 239 (457)
T PRK10580 160 IIIMIVAGIGIIIWGIGNGGQPTGIHNLWSNGGFFSNGWLGMVMSLQMVMFAYGGIEIIGITAGEAKDPEKSIPRAINSV 239 (457)
T ss_pred HHHHHHHHHHHHHcCCCCCCCCCCccccCCCCCCCCcchHHHHHHHHHHHHHHhCHHHHHHHHHHhcChhhHHHHHHHHH
Confidence 665544321 11 11111 111111133444433 3447999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhccCCCcccccccHHHHHHHHhcchhHHHHHHHHHHHHhHHHHHHHhhhhhHHHHhhhhcCCCc
Q 012131 243 LILVVFAYFFPLLIGTGAAPVHRELWSDGYFSVIAKLIGGVWLRTWIQGASAVSNMGMFIAEMSSDSFQLLGMAERGMLP 322 (470)
Q Consensus 243 ~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP 322 (470)
...+.++|++..++.....|.++....++|+.+..+..+.++...++.+..+++.+++.++++.+.+|.+++|||||.+|
T Consensus 240 ~~~~~~~y~~~~~~~~~~~p~~~i~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~~~~~ardg~lP 319 (457)
T PRK10580 240 PMRILVFYVGTLFVIMSIYPWNQVGTNGSPFVLTFQHMGITFAASILNFVVLTASLSAINSDVFGVGRMLHGMAEQGSAP 319 (457)
T ss_pred HHHHHHHHHHHHHHHheecccCCCCccCChHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcC
Confidence 99999999999998888888888776677888877777777777788888888999999999999999999999999999
Q ss_pred hhhhhcCCCCCChHHHHHHHHHHHHHHHH-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC---CCCCcccC
Q 012131 323 EIFARRSQYGTPLVGILFSASGVILLSWL-------SFQEIVAAENFLYCFAMIMEFIAFVKLRMQYPE---AIRPYKVP 392 (470)
Q Consensus 323 ~~~~~~~r~~~P~~ai~~~~~~~~~~~~~-------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 392 (470)
++|+|+||+++|++|++++.++.++.... .++.+.+++++...+.|.+.+++++++||++++ .++|||.|
T Consensus 320 ~~~~kv~~~~~P~~Ai~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~~~~~lr~~~~~~~~~~~~f~~~ 399 (457)
T PRK10580 320 KIFSKTSRRGIPWVTVLVMTTALLFAVYLNYIMPENVFLVIASLATFATVWVWIMILLSQIAFRRRLPPEEVKALKFKVP 399 (457)
T ss_pred HHHHhhCCCCCcHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccC
Confidence 99999999999999999987755432222 256788999999999999999999999988533 24589999
Q ss_pred CchhhHHHhhhhhHHHHHHHH-Hhc-cchHHHHHHHHHHHhhhhHHHHH
Q 012131 393 LGTVGAILLCIPPTLLILVVL-ALA-SPKVMAISVIAVLIGFFIQPCMT 439 (470)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~g~~~~~~~~ 439 (470)
.+.+...+ ++....++.... ..+ ......+...+++++.+.|..++
T Consensus 400 ~~~~~~~~-~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~y~~~~ 447 (457)
T PRK10580 400 GGVATTIG-GLIFLVFIIGLIGYHPDTRISLYVGFAWIVLLLIGWMFKR 447 (457)
T ss_pred CccHHHHH-HHHHHHHHHHHHHHCccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 76444333 333333333322 222 23345666677777777776543
|
|
| >PRK11049 D-alanine/D-serine/glycine permease; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-51 Score=414.44 Aligned_cols=375 Identities=19% Similarity=0.290 Sum_probs=309.4
Q ss_pred cccccccccchhhHHHhHhhhhcc-cccchh-hHHhhhChHHHHHHHHHHHHHHHHHHHHHHHHhhccCccCCchhHhHH
Q 012131 17 PKLERFQKVSVIPLVFLIFYEVSG-GPFGVE-DSVMAAGPLLALIGFLFFPFIWSIPEALITAEMGTMFPENGGYVVWVA 94 (470)
Q Consensus 17 ~~~~~~r~l~~~~~~~~~~~~v~g-g~~~~~-~~~~~~g~~~~~~~~ii~~~~~~~~~al~~~el~~~~p~~GG~y~~~~ 94 (470)
+++++||+++.++..++++|.++| |+|..+ ..+..+|| ..+++|++++++ .++.+++++|++++.|..||.|.|++
T Consensus 14 ~~~~l~r~l~~~~~~~i~vG~~IGsGif~~~g~~~~~aGp-~~i~~~~i~~i~-~~~~~~s~aEl~s~~~~~~~~~~ya~ 91 (469)
T PRK11049 14 AEQSLRRNLTNRHIQLIAIGGAIGTGLFMGSGKTISLAGP-SIIFVYMIIGFM-LFFVMRAMGELLLSNLEYKSFSDFAS 91 (469)
T ss_pred cchhhhccCcHHHHHHHHHhhHHHhHHHHHhhHHHhhcCc-HHHHHHHHHHHH-HHHHHHHHHHHHHhcCCCCcHHHHHH
Confidence 345699999999999999999988 887765 45666899 578999999986 78889999999999999999999999
Q ss_pred HhhCChHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 012131 95 SALGPHWGFQQGWMKWLSGVIDNALYPVLFLDYLKSAIPALEGGFPRIVAVLLLTTALTYMNYRGLTIVGWVAIVLGVFS 174 (470)
Q Consensus 95 ~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~i~~~~~ 174 (470)
+.+||..||++||.+++.+....++.+...+.|+..++|.. +.+..+.++++++..+|++|+|..+++|.+...++
T Consensus 92 ~~~g~~~gf~~gW~~~~~~~~~~~a~~~a~~~~~~~~~p~~----~~~~~~~~~~~~~~~iN~~g~~~~~~i~~~~~~~k 167 (469)
T PRK11049 92 DLLGPWAGYFTGWTYWFCWVVTGIADVVAITAYAQFWFPDL----SDWVASLAVVLLLLSLNLATVKMFGEMEFWFAMIK 167 (469)
T ss_pred HHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC----cHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 99999999999999999998887788888888888877643 33455556777889999999999999999999988
Q ss_pred HHHHHHHHHHHhhc---------cCCCccccc----cccccchHHHH---HHHHhhhhhHHHhhhhhccccCCCCchhHH
Q 012131 175 LVPFALMGLIAIPR---------LKPWRWCMV----DLKNVNWGLYL---NTLFWNLNYWDSISTLVGEVEDPGKTLPRA 238 (470)
Q Consensus 175 i~~~~~~~i~~~~~---------~~~~~~~~~----~~~~~~~~~~~---~~~~~~~~G~e~~~~~~~E~k~P~k~ip~a 238 (470)
++.++++.+.++.. .+..++.+. +..+.++.+++ ...+|+|.|+|.+++++||+|||+||+||+
T Consensus 168 l~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~~~~~~~~~~af~G~e~~~~~a~E~knP~r~iPra 247 (469)
T PRK11049 168 IVAIVALIVVGLVMVAMHFQSPTGVEASFAHLWNDGGMFPKGLSGFFAGFQIAVFAFVGIELVGTTAAETKDPEKSLPRA 247 (469)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCCCCCCcccccCCCCCCCcccHHHHHHHHHHHHHHHhcHHHHHHHHHHhcCHhhHHHHH
Confidence 87777766654421 111112111 11123444443 344799999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCcccccccHHHHHHHHhcchhHHHHHHHHHHHHhHHHHHHHhhhhhHHHHhhhhc
Q 012131 239 LFYALILVVFAYFFPLLIGTGAAPVHRELWSDGYFSVIAKLIGGVWLRTWIQGASAVSNMGMFIAEMSSDSFQLLGMAER 318 (470)
Q Consensus 239 i~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d 318 (470)
+..+...+.++|++.........|.++...+++|+.+..++.+++.+..++.+..+++.+++.++.+.+.||.+|+|+||
T Consensus 248 i~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~s~~~~~~~~~~~~sR~l~a~ard 327 (469)
T PRK11049 248 INSIPIRIIMFYVFALIVIMSVTPWSSVVPDKSPFVELFVLVGLPAAASVINFVVLTSAASSANSGVFSTSRMLFGLAQE 327 (469)
T ss_pred HHHHHHHHHHHHHHHHHHHeeecCccccCccCCcHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99888889999999999888888888887777899888888888888888899999999999999999999999999999
Q ss_pred CCCchhhhhcCCCCCChHHHHHHHHHHHH---HHHH------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCC--C
Q 012131 319 GMLPEIFARRSQYGTPLVGILFSASGVIL---LSWL------SFQEIVAAENFLYCFAMIMEFIAFVKLRMQYPEAI--R 387 (470)
Q Consensus 319 ~~lP~~~~~~~r~~~P~~ai~~~~~~~~~---~~~~------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 387 (470)
|.+|++|+|+||+++|++|+++.+++..+ +... .++.+.+..++...+.|.+..++++++|||+|+.+ |
T Consensus 328 g~lP~~~~kv~~~~tP~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~y~~~~~a~~~lr~~~p~~~~~~ 407 (469)
T PRK11049 328 GVAPKAFAKLSKRAVPAKGLTFSCICLLGGVVLLYVNPSVIGAFTLVTTVSAILFMFVWTIILCSYLVYRKQRPHLHEKS 407 (469)
T ss_pred CCCCHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCC
Confidence 99999999999889999999998776542 1111 25667788888888999999999999999988765 6
Q ss_pred CcccCCchhh
Q 012131 388 PYKVPLGTVG 397 (470)
Q Consensus 388 ~~~~~~~~~~ 397 (470)
|||.|.+.+.
T Consensus 408 pf~~p~~~~~ 417 (469)
T PRK11049 408 IYKMPLGKLM 417 (469)
T ss_pred CccCcCcchH
Confidence 8999977543
|
|
| >TIGR00913 2A0310 amino acid permease (yeast) | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-51 Score=414.79 Aligned_cols=419 Identities=17% Similarity=0.214 Sum_probs=318.5
Q ss_pred ccccchhhHHHhHhhhhcc-cccch-hhHHhhhChHHHHHHHHHHHHHHHHHHHHHHHHhhccCcc-CCchhHhHHHhhC
Q 012131 22 FQKVSVIPLVFLIFYEVSG-GPFGV-EDSVMAAGPLLALIGFLFFPFIWSIPEALITAEMGTMFPE-NGGYVVWVASALG 98 (470)
Q Consensus 22 ~r~l~~~~~~~~~~~~v~g-g~~~~-~~~~~~~g~~~~~~~~ii~~~~~~~~~al~~~el~~~~p~-~GG~y~~~~~~~g 98 (470)
||+++.+++.++++|.++| |++.. ...+..+||...+++|++++++ .++.+++++||++++|+ +||.|.|+++.+|
T Consensus 1 ~r~L~~~~~~~l~vg~~IGsGif~~~~~~~~~~Gp~~~i~~~~i~~~~-~~~~a~~~aEl~s~~P~~gG~~~~~~~~~~g 79 (478)
T TIGR00913 1 KKSLKQRHIQMIALGGTIGTGLLVGSGTALATGGPAGLLIGYAIMGSI-IYCVMQSLGEMATFYPVVSGSFATYASRFVD 79 (478)
T ss_pred CCCCcHHHHHHHHHhccccchhhhcchhHHHhcCCHHHHHHHHHHHHH-HHHHHHHHHHHHHhCCCCCCCHHHHHHHHcC
Confidence 5889999999999999988 77765 4556678987778999999986 88889999999999996 5677789999999
Q ss_pred ChHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 012131 99 PHWGFQQGWMKWLSGVIDNALYPVLFLDYLKSAIPALEGGFPRIVAVLLLTTALTYMNYRGLTIVGWVAIVLGVFSLVPF 178 (470)
Q Consensus 99 ~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~i~~~~~i~~~ 178 (470)
|.+||.+||.+|++++...+......+.++..+.+.. +...+..+++++...+|++|+|.++++|.+...++++.+
T Consensus 80 ~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~in~~gv~~~~~~~~~~~~~ki~~l 155 (478)
T TIGR00913 80 PAFGFAVGWNYWLQWLIVLPLELVTASMTIQYWTDKV----NPAVWIAIFYVFIVIINLFGVKGYGEAEFWFSSIKILAI 155 (478)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999888888765422 223333455667889999999999999999887776655
Q ss_pred HHHHHHHh---hccCCC-------cccccc-cccc----chHHHH---HHHHhhhhhHHHhhhhhccccCCCCchhHHHH
Q 012131 179 ALMGLIAI---PRLKPW-------RWCMVD-LKNV----NWGLYL---NTLFWNLNYWDSISTLVGEVEDPGKTLPRALF 240 (470)
Q Consensus 179 ~~~~i~~~---~~~~~~-------~~~~~~-~~~~----~~~~~~---~~~~~~~~G~e~~~~~~~E~k~P~k~ip~ai~ 240 (470)
+.+.+.++ ....++ ++.+.+ ..+. .+.++. ...+|+|.|+|.+++++||+|||+||+||+++
T Consensus 156 ~~~ii~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~knP~r~iPrai~ 235 (478)
T TIGR00913 156 IGFIILSIILNCGGGPNHGYIGFRYWHDPGAFAGGTIGGRFKGVCSVFVTAAFSFGGTELVALTAGEAANPRKSIPRAAK 235 (478)
T ss_pred HHHHHHHHHHHHcCCCCCCCCcccccCCCCCCCCCCccchHHHHHHHHHHHHhhhccHHHHHHHHHhhcChhhHHHHHHH
Confidence 55444322 111111 111111 1111 133333 33479999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCcc--cc-------cccHHHHHHHHhcchhHHHHHHHHHHHHhHHHHHHHhhhhhHH
Q 012131 241 YALILVVFAYFFPLLIGTGAAPVHRE--LW-------SDGYFSVIAKLIGGVWLRTWIQGASAVSNMGMFIAEMSSDSFQ 311 (470)
Q Consensus 241 ~~~~~~~~~y~l~~~~~~~~~~~~~~--~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~ 311 (470)
.+..++.++|++..+......|.++. .. .++|+....+..+.++...++.+.++++.+++.++.+.+.+|.
T Consensus 236 ~~~~~~~~~Y~l~~~~~~~~~p~~~~~l~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~s~~~~~~~~~~~~sR~ 315 (478)
T TIGR00913 236 RTFWRILVFYILTLFLIGFLVPYNDPRLLSSSSSSDSAASPFVIAIQNHGIKVLPHIFNAVILISVLSAANSSLYASSRT 315 (478)
T ss_pred HHHHHHHHHHHHHHHHheeeccCCChhhcccccCCCcCCCcHHHHHHHcCCchHhHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 99999999999998877777776542 11 1367777667777788888899999999999999999999999
Q ss_pred HHhhhhcCCCchhhhhcCCCCCChHHHHHHHHHHHHHHHH-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC--
Q 012131 312 LLGMAERGMLPEIFARRSQYGTPLVGILFSASGVILLSWL-------SFQEIVAAENFLYCFAMIMEFIAFVKLRMQY-- 382 (470)
Q Consensus 312 l~~~a~d~~lP~~~~~~~r~~~P~~ai~~~~~~~~~~~~~-------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-- 382 (470)
+|++||||.+|++|+|+||+++|++|+++..+++++..+. .++.+.++.+....+.|++.+++.+++||++
T Consensus 316 l~a~ardg~lP~~f~k~~~~~~P~~Ai~~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~~i~y~~~~~~~i~~r~~~~~ 395 (478)
T TIGR00913 316 LYALAHQGLAPKIFAYVDRRGVPYVAVIVSSLFGLLAFLAVSKKEAEVFTWLLNISGLSGFFTWMCICLSHIRFRKAMKA 395 (478)
T ss_pred HHHHHhCCcccHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999887643332 2677888999999999999999999999863
Q ss_pred ---CCCCCCcccCCchhhHHHhhhhhHHHHHHHH---Hhc---cchHHHHHHHHHHHhhhhHHHHHHHhhcc
Q 012131 383 ---PEAIRPYKVPLGTVGAILLCIPPTLLILVVL---ALA---SPKVMAISVIAVLIGFFIQPCMTYAEKRQ 445 (470)
Q Consensus 383 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~---~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 445 (470)
++.+||||.|.++....+..+.....+.+.. ..+ +..........+..+..+|..++.++|++
T Consensus 396 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (478)
T TIGR00913 396 QGRSLDELPYKSQTGPYGSYYALFFNILILIAQGYVAFAPVKFSAKSFFEAYLSLPIFIALYIGHKVYKRDK 467 (478)
T ss_pred cCCCcccCCccCCCcchHHHHHHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 3457899999875444333332222222222 112 23345556666666677777776655443
|
|
| >TIGR03810 arg_ornith_anti arginine/ornithine antiporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-51 Score=412.30 Aligned_cols=410 Identities=18% Similarity=0.257 Sum_probs=332.0
Q ss_pred cccchhhHHHhHhhhhcc-cccchhhHHh-hhChHHHHHHHHHHHHHHHHHHHHHHHHhhccCccC-CchhHhHHHhhCC
Q 012131 23 QKVSVIPLVFLIFYEVSG-GPFGVEDSVM-AAGPLLALIGFLFFPFIWSIPEALITAEMGTMFPEN-GGYVVWVASALGP 99 (470)
Q Consensus 23 r~l~~~~~~~~~~~~v~g-g~~~~~~~~~-~~g~~~~~~~~ii~~~~~~~~~al~~~el~~~~p~~-GG~y~~~~~~~g~ 99 (470)
|+++++++.++.+|+++| |+|..|.... .+||...+++|++++++ .++.+++++||++++|++ ||.|.|+++.+||
T Consensus 1 ~~lgl~~~~~l~vg~~IGsGif~~~~~~~~~ag~~~~l~~w~i~~~~-~~~~al~~aeL~s~~P~~gGG~y~y~~~~fG~ 79 (468)
T TIGR03810 1 KKLGLGALTALVVGSMIGSGIFSLPSDMAAGAAAGAVLIGWVITGVG-MLALAFSFQNLANKKPELDGGVYSYAKAGFGP 79 (468)
T ss_pred CCCCHHHHHHHHHHhHHhhHHHHhHHHHHHhhchHHHHHHHHHHHHH-HHHHHHHHHHHHhhCCCCCCChhhhHHhHcCc
Confidence 689999999999999988 8988877655 47887788999999986 888899999999999996 5999999999999
Q ss_pred hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccccCC--chHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 012131 100 HWGFQQGWMKWLSGVIDNALYPVLFLDYLKSAIPALEG--GFPRIVAVLLLTTALTYMNYRGLTIVGWVAIVLGVFSLVP 177 (470)
Q Consensus 100 ~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~i~~~~~i~~ 177 (470)
..||+.||.+|+++.....++......++.+++|.+.. +.+....+.++++.+..+|++|+|..+++|.+.++.++++
T Consensus 80 ~~gf~~gw~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ln~~Gv~~~~~i~~i~~~~ki~~ 159 (468)
T TIGR03810 80 FMGFISAWGYWLSAWLGNVAYATLLFSTLGYFFPIFGGGNNPPSIIGASVLLWCVHFLVLRGVEGAAFINTITTIAKLVP 159 (468)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCcHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHH
Confidence 99999999999998877777777777777777775432 2344556667777889999999999999999999999888
Q ss_pred HHHHHHHHhhccCCCccc-----ccc--c-cccchH---HHHHHHHhhhhhHHHhhhhhccccCCCCchhHHHHHHHHHH
Q 012131 178 FALMGLIAIPRLKPWRWC-----MVD--L-KNVNWG---LYLNTLFWNLNYWDSISTLVGEVEDPGKTLPRALFYALILV 246 (470)
Q Consensus 178 ~~~~~i~~~~~~~~~~~~-----~~~--~-~~~~~~---~~~~~~~~~~~G~e~~~~~~~E~k~P~k~ip~ai~~~~~~~ 246 (470)
++++.+.+....+.+++. +.+ . ....+. ..+...+|+|.|+|.+++++||.|| +||+||++..+...+
T Consensus 160 l~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~e~k~-~k~ip~ai~~~~~~v 238 (468)
T TIGR03810 160 LFVFIVIGIFAFKGDTFTNDFWGNANGGFSLGSVMTQVKNMMLVTVWVFIGIEGASMLSARAEK-RSDVGKATVIGLIGV 238 (468)
T ss_pred HHHHHHHHHHHhcHhhcCccccccccccCccccHHHHHHHHHHHHHHHHHhHhHHhhhHhhccC-cccchHHHHHHHHHH
Confidence 777766554322222111 111 0 111122 2334458999999999999999998 799999999999999
Q ss_pred HHHHHHHHHHHHhccCCCcccccccH-HHHHHHHhcchhHHHHHHHHHHHHhHHHHHHHhhhhhHHHHhhhhcCCCchhh
Q 012131 247 VFAYFFPLLIGTGAAPVHRELWSDGY-FSVIAKLIGGVWLRTWIQGASAVSNMGMFIAEMSSDSFQLLGMAERGMLPEIF 325 (470)
Q Consensus 247 ~~~y~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~~~ 325 (470)
.++|++......+..|.+++...++| ..++.++..++++..++.+.++++.+++.++++.+.+|.+|+|||||.+|++|
T Consensus 239 ~~lY~l~~~~~~g~~~~~~l~~~~~p~~~~~~~~~~g~~~~~~i~~~~~is~~~~~~~~~~~~sR~~~a~ardg~lP~~f 318 (468)
T TIGR03810 239 LAIYVLVSVLSYGIMTQAQLAGLKNPSMAYVLEHMVGTWGAVLINIGLIISILGAWLSWTLLPAEIPLLMAKDKLMPKYF 318 (468)
T ss_pred HHHHHHHHHHHHhCcCHHHHhcCCCchHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHH
Confidence 99999999999888888876655565 66777788888888999999999999999999999999999999999999999
Q ss_pred hhcCCCCCChHHHHHHHHHHHHHHHH------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC-CCCCcccCCchhhH
Q 012131 326 ARRSQYGTPLVGILFSASGVILLSWL------SFQEIVAAENFLYCFAMIMEFIAFVKLRMQYPE-AIRPYKVPLGTVGA 398 (470)
Q Consensus 326 ~~~~r~~~P~~ai~~~~~~~~~~~~~------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 398 (470)
+|+||+++|++|++++.+++.++... .++.+.++.+....+.|.+..++.+++|+|+++ .+|+++
T Consensus 319 ~k~~~~~tP~~al~~~~~i~~~~~l~~~~~~~~~~~l~~~~~~~~li~y~~~~~~~~~l~~~~~~~~~~~~~-------- 390 (468)
T TIGR03810 319 GKENANGAPTNALWLTNGLIQIFLLTTLFSEQAYNFAISLATSAILVPYLWSAAYQVKLSWRGGQERGRRKQ-------- 390 (468)
T ss_pred HhhCCCCCCHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhh--------
Confidence 99999999999999988887544332 377889999999999999999999999877632 223332
Q ss_pred HHhhhhhHHHHHHHHHhccchHHHHHHHHHHHhhhhHHHHHHHh
Q 012131 399 ILLCIPPTLLILVVLALASPKVMAISVIAVLIGFFIQPCMTYAE 442 (470)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 442 (470)
.+.+.+..+++++..+...++....+....+.|...|.++||++
T Consensus 391 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~~~~~~ 434 (468)
T TIGR03810 391 LLIGLVALLYAVWLIYAAGLKYLLLSAILYAPGIYFYARARKEK 434 (468)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 23355666777777778888888899999999998887655443
|
Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2. |
| >PRK10197 gamma-aminobutyrate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-50 Score=403.55 Aligned_cols=406 Identities=18% Similarity=0.244 Sum_probs=319.3
Q ss_pred hHhhhhcc-cccchhh-HHhhhChHHHHHHHHHHHHHHHHHHHHHHHHhhccCccCCchhHhHHHhhCChHHHHHHHHHH
Q 012131 33 LIFYEVSG-GPFGVED-SVMAAGPLLALIGFLFFPFIWSIPEALITAEMGTMFPENGGYVVWVASALGPHWGFQQGWMKW 110 (470)
Q Consensus 33 ~~~~~v~g-g~~~~~~-~~~~~g~~~~~~~~ii~~~~~~~~~al~~~el~~~~p~~GG~y~~~~~~~g~~~g~~~g~~~~ 110 (470)
+++|.++| |+|..+. .+..+||. .+++|++++++ .++.+++++||++++|++||.|.|++|.+||.+||..||.+|
T Consensus 2 ~~ig~~IGsGif~~~g~~~~~aG~~-~ll~~~i~gi~-~~~~al~~aEL~s~~P~~Gg~y~y~~~~~G~~~gf~~gw~~~ 79 (446)
T PRK10197 2 LSIAGVIGASLFVGSSVAIAEAGPA-VLLAYLFAGLL-VVMIMRMLAEMAVATPDTGSFSTYADKAIGRWAGYTIGWLYW 79 (446)
T ss_pred eeecchhHhHHHHHhHHHHHhcChH-HHHHHHHHHHH-HHHHHHHHHHHHHhCCCCCCHHHHHHHHcChHHHHHHHHHHH
Confidence 46777778 7777655 56678984 88999999996 778899999999999999999999999999999999999999
Q ss_pred HHHhhhHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhh--c
Q 012131 111 LSGVIDNALYPVLFLDYLKSAIPALEGGFPRIVAVLLLTTALTYMNYRGLTIVGWVAIVLGVFSLVPFALMGLIAIP--R 188 (470)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~i~~~~~i~~~~~~~i~~~~--~ 188 (470)
+.++...+.++...+.+++.+.+. .+.+.++.+++++++.+|++|+|..+++|.+.++++++.++++.+.++. .
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~~~~lN~~gv~~~~~i~~~~~~~ki~~li~~ii~~~~~~~ 155 (446)
T PRK10197 80 WFWVLVIPLEANIAAMILHSWVPG----IPIWLFSLVITLALTGSNLLSVKNYGEFEFWLALCKVIAILAFIFLGAVAIS 155 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccc----CcHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999888887777777766543 3556778888889999999999999999999999988877776555432 1
Q ss_pred -cCC----Ccccc----ccccccchHHHHH---HHHhhhhhHHHhhhhhccccCCCCchhHHHHHHHHHHHHHHHHHHHH
Q 012131 189 -LKP----WRWCM----VDLKNVNWGLYLN---TLFWNLNYWDSISTLVGEVEDPGKTLPRALFYALILVVFAYFFPLLI 256 (470)
Q Consensus 189 -~~~----~~~~~----~~~~~~~~~~~~~---~~~~~~~G~e~~~~~~~E~k~P~k~ip~ai~~~~~~~~~~y~l~~~~ 256 (470)
.++ .++.+ .+..+.++.++.. ..+|+|.|+|.+++.+||+|||+||+||++..+...+.++|++..+.
T Consensus 156 g~~~~~~~~~~~~~~~~~~~~p~g~~~~~~a~~~~~faf~G~e~~~~~a~E~knP~r~iPrai~~~~~~i~i~Yil~~~~ 235 (446)
T PRK10197 156 GFYPYAEVSGISRLWDSGGFMPNGFGAVLSAMLITMFSFMGAEIVTIAAAESDTPEKHIVRATNSVIWRISIFYLCSIFV 235 (446)
T ss_pred CCCCCCCCCcchhcCCCCCCCcccHHHHHHHHHHHHHHHhCHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 11111 1111334544443 44799999999999999999999999999999999999999999999
Q ss_pred HHhccCCCccccc-ccHHHHHHHHhcchhHHHHHHHHHHHHhHHHHHHHhhhhhHHHHhhhhcCCCchhhhhcCCCCCCh
Q 012131 257 GTGAAPVHRELWS-DGYFSVIAKLIGGVWLRTWIQGASAVSNMGMFIAEMSSDSFQLLGMAERGMLPEIFARRSQYGTPL 335 (470)
Q Consensus 257 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~~~~~~~r~~~P~ 335 (470)
.....|.++.+.. ..++....+..+++....++.+.++++.+++.++++.+.+|.+|++||||.+|++|+|+||+++|+
T Consensus 236 ~~~~~p~~~~~~~~~~~~~~~~~~~g~~~~~~ii~~~i~~~~~~~~n~~~~~~sR~l~a~ardg~lP~~~~~~~~~~~P~ 315 (446)
T PRK10197 236 VVALIPWNMPGLKAVGSYRSVLELLNIPHAKLIMDCVILLSVTSCLNSALYTASRMLYSLSRRGDAPAVMGKINRSKTPY 315 (446)
T ss_pred HheecCcCcccccccCcHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCHHHHhhCcCCCcH
Confidence 8888888764322 345666777788888888899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--CCCCCCCcccCCchhhHHHhhhhhH
Q 012131 336 VGILFSASGVILLSWL-------SFQEIVAAENFLYCFAMIMEFIAFVKLRMQ--YPEAIRPYKVPLGTVGAILLCIPPT 406 (470)
Q Consensus 336 ~ai~~~~~~~~~~~~~-------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (470)
+|++++.+++++..+. .++.+.+..+....+.|.+..++++++||+ +++.++|||.|.+++...+ ++...
T Consensus 316 ~Ail~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~li~y~~~~~a~i~lr~~~~~~~~~~~~~~~~~p~~~~~-~i~~~ 394 (446)
T PRK10197 316 VAVLLSTGAAFLTVVVNYYAPAKVFKFLIDSSGAIALLVYLVIAVSQLRMRKILRAEGSEIRLRMWLYPWLTWL-VIGFI 394 (446)
T ss_pred HHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcCCCcchHHHH-HHHHH
Confidence 9999998877654333 367788899999999999999999999986 3445678999877544443 33334
Q ss_pred HHHHHHHHh-ccchHHHHHHHHHHHhhhhHH-HHHHHhhcc
Q 012131 407 LLILVVLAL-ASPKVMAISVIAVLIGFFIQP-CMTYAEKRQ 445 (470)
Q Consensus 407 ~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~ 445 (470)
.++...... ++.........+++++...|+ ..+|++|++
T Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (446)
T PRK10197 395 TFVLVVMLFRPAQQLEVISTGLLAIGIICTVPIMARWKKLV 435 (446)
T ss_pred HHHHHHHHHCcchHHHHHHHHHHHHHHHhhhHHHhhhcccc
Confidence 333333333 344445556777777788777 455555443
|
|
| >COG0833 LysP Amino acid transporters [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-51 Score=394.65 Aligned_cols=420 Identities=17% Similarity=0.230 Sum_probs=343.8
Q ss_pred ccccccchhhHHHhHhhhhcc-cc-cchhhHHhhhChHHHHHHHHHHHHHHHHHHHHHHHHhhccCccCCchhHhHHHhh
Q 012131 20 ERFQKVSVIPLVFLIFYEVSG-GP-FGVEDSVMAAGPLLALIGFLFFPFIWSIPEALITAEMGTMFPENGGYVVWVASAL 97 (470)
Q Consensus 20 ~~~r~l~~~~~~~~~~~~v~g-g~-~~~~~~~~~~g~~~~~~~~ii~~~~~~~~~al~~~el~~~~p~~GG~y~~~~~~~ 97 (470)
+.||++...++.++++|..+| |. .+++.++.++||.+.+++|++.+.+ ..++..|..||+..+|.+|+...|++|..
T Consensus 41 ~lkR~LK~RHl~MIAiGG~IGTGLfvgsG~~l~~aGP~g~li~y~i~G~~-vy~vm~sLGEma~~~P~sGsF~~ya~rfv 119 (541)
T COG0833 41 ELKRSLKSRHLQMIAIGGAIGTGLFVGSGKALSQAGPAGLLIAYLIIGIM-VYFVMQSLGELAVFYPVSGSFSTYATRFV 119 (541)
T ss_pred hhhhhhhHHHHHHHHhccccccceeeecchhhhccCcHHHHHHHHHHHHH-HHHHHHHHHHHHhhcCCCCchhhhhhhhc
Confidence 488999999999999999888 54 5678999999999999999999986 55567777999999999999999999999
Q ss_pred CChHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 012131 98 GPHWGFQQGWMKWLSGVIDNALYPVLFLDYLKSAIPALEGGFPRIVAVLLLTTALTYMNYRGLTIVGWVAIVLGVFSLVP 177 (470)
Q Consensus 98 g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~i~~~~~i~~ 177 (470)
+|-+||..||.||+.|....+......+..+++++|+. .+.+.+..++.+++..+|.+|+|..+-.+.+++.++++.
T Consensus 120 dpa~GFa~gWnYw~~w~v~~~~El~aa~~vi~yW~p~~---v~~~~w~~iF~~~i~~iN~~~Vk~fGE~Efw~s~iKV~~ 196 (541)
T COG0833 120 DPAFGFALGWNYWLNWAVTLPLELTAASLVIQYWFPDT---VPPWIWIAIFLVLIFLLNLFGVKGFGETEFWFSSIKVLT 196 (541)
T ss_pred CchHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhcCCC---CChHHHHHHHHHHHHHHHHhcccccceehHHHHHHHHHH
Confidence 99999999999999999999999999999999998653 466778888899999999999999999999999888887
Q ss_pred HHHHHHHHh---hccCC-------CccccccccccchHHHHHHH---HhhhhhHHHhhhhhccccCCCCchhHHHHHHHH
Q 012131 178 FALMGLIAI---PRLKP-------WRWCMVDLKNVNWGLYLNTL---FWNLNYWDSISTLVGEVEDPGKTLPRALFYALI 244 (470)
Q Consensus 178 ~~~~~i~~~---~~~~~-------~~~~~~~~~~~~~~~~~~~~---~~~~~G~e~~~~~~~E~k~P~k~ip~ai~~~~~ 244 (470)
++.+++.++ ..+.+ +.|..+..-+.++.++.... .|+|.|.|.+...++|.|||+|++|||+.....
T Consensus 197 ii~Fii~gii~~~Gg~~~~~~ig~~yw~~pg~F~~gf~g~~~v~v~a~Fsf~GtElvgiaAgEs~nP~K~iPkAik~vfw 276 (541)
T COG0833 197 IIGFIILGIIIICGGGPTHGYIGFNYWHDPGAFAGGFKGFCSVFVIAAFSFSGTELVGLAAGESENPRKSIPKAIKQVFW 276 (541)
T ss_pred HHHHHHHHHHHhcCCCCCCCCcceeeecCCCCCCcchHHHHHHHhhheeeeeceeeeeeeecccCCchhhhHHHHHHHHH
Confidence 777766543 22211 22222222344555554433 599999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhccCCCccc--------ccccHHHHHHHHhcchhHHHHHHHHHHHHhHHHHHHHhhhhhHHHHhhh
Q 012131 245 LVVFAYFFPLLIGTGAAPVHREL--------WSDGYFSVIAKLIGGVWLRTWIQGASAVSNMGMFIAEMSSDSFQLLGMA 316 (470)
Q Consensus 245 ~~~~~y~l~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a 316 (470)
.+.++|++..+.+...+|.++.+ ...+|+..+.+..+.+..+.++.++++++.+++.|+.+++.||++|+||
T Consensus 277 RIl~FYi~si~~ig~lvPy~dp~Ll~~~~~~~~~SPFvia~~~~Gi~~~~~imNaVIL~svlSa~NS~lYasSR~L~sLA 356 (541)
T COG0833 277 RILLFYILSIFVIGLLVPYNDPRLLGNSSSGVAASPFVIAIKNAGIPVAASIMNAVILTSVLSAANSGLYASSRMLYSLA 356 (541)
T ss_pred HHHHHHHHHHHHheEEccCCCcccccCCcCCccCCChhHhHHhcCCccchHHHHHHHHHHHHHHhhccchHHHHHHHHHH
Confidence 99999999999999999988732 3456999999999999999999999999999999999999999999999
Q ss_pred hcCCCchhhhhcCCCCCChHHHHHHHHHHHHHHHH-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC-----C
Q 012131 317 ERGMLPEIFARRSQYGTPLVGILFSASGVILLSWL-------SFQEIVAAENFLYCFAMIMEFIAFVKLRMQYP-----E 384 (470)
Q Consensus 317 ~d~~lP~~~~~~~r~~~P~~ai~~~~~~~~~~~~~-------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~ 384 (470)
+||..||+|+|+||+++|++|++++.+++++-.+. .++.+.+++++...+..+..+++++|+||..+ .
T Consensus 357 ~~g~APk~f~~~~r~GvP~~al~vt~~fg~lafl~~~~~~~~vf~wL~~isg~s~~i~W~~I~~shirFR~A~~~QG~s~ 436 (541)
T COG0833 357 KQGKAPKIFAKVDRRGVPLVALLVTLLFGLLAFLNSSFKETTVFNWLLNISGLSGFIAWGSICLSHIRFRRAMKAQGRSL 436 (541)
T ss_pred hcCCCchHHHhhCCCCCchHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCh
Confidence 99999999999999999999999999998654433 27889999999999999999999999998632 2
Q ss_pred CCCCcccCCchhhHHHhhhhhHHHHHHHH---Hhc---cchHHHHHHHHHHHhhhhHHHHHHHhh
Q 012131 385 AIRPYKVPLGTVGAILLCIPPTLLILVVL---ALA---SPKVMAISVIAVLIGFFIQPCMTYAEK 443 (470)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~---~~~~~~~~~~~~~~g~~~~~~~~~~~~ 443 (470)
.+-|||.|.++.+..+..++..+.++... +.+ .+.........+.+.++.|..++..+|
T Consensus 437 ~~L~yks~~~p~g~~~~~~~~~li~i~q~y~af~p~~~~~~~F~~~Yl~~pi~i~~y~~yk~~~k 501 (541)
T COG0833 437 DELPYKSPFGPYGPIYGLILCILILIGQGYVAFFPIGFSAGDFFAAYLGLPIFIAIYIGYKLYKK 501 (541)
T ss_pred hhcCccCCCccHHHHHHHHHHHHHHHHcchheeecCCccHHHHHHHHHHHHHHHHHHHHheeEec
Confidence 24589999986666554444333333211 111 223444555555556666666665544
|
|
| >PRK11021 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-49 Score=393.16 Aligned_cols=352 Identities=18% Similarity=0.237 Sum_probs=282.5
Q ss_pred cchhhHHHhHhhhhcc-cccchhhHHhh-hChHHHHHHHHHHHHHHHHHHHHHHHHhhccCccCCchhHhHHHhhCChHH
Q 012131 25 VSVIPLVFLIFYEVSG-GPFGVEDSVMA-AGPLLALIGFLFFPFIWSIPEALITAEMGTMFPENGGYVVWVASALGPHWG 102 (470)
Q Consensus 25 l~~~~~~~~~~~~v~g-g~~~~~~~~~~-~g~~~~~~~~ii~~~~~~~~~al~~~el~~~~p~~GG~y~~~~~~~g~~~g 102 (470)
+++|+..++.+|+|+| |+|..+....+ +|| ..+++|+++++. .++.+++|+|+++++|++||.|.|+++.+||++|
T Consensus 1 ~g~~~~~~l~~g~~IGsGif~~~g~~~~~aG~-~~~~~~~i~~~~-~~~~al~~aEl~s~~P~aGG~y~y~~~~~G~~~g 78 (410)
T PRK11021 1 LGLWQGIGLLSTSLLGTGVFAVPALAALVAGN-NSLWAWPLLILL-IFPIAIVFARLGRHFPHAGGPAHFVGMAFGPRLG 78 (410)
T ss_pred CcHHHHHHHHHHHHHhhHHHHhHHHHHHhcCc-hHHHHHHHHHHH-HHHHHHHHHHHHHhCCCCCCHHHhHHHHhCchhH
Confidence 5789999999999999 89888766554 788 578999999996 9999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 012131 103 FQQGWMKWLSGVIDNALYPVLFLDYLKSAIPALEGGFPRIVAVLLLTTALTYMNYRGLTIVGWVAIVLGVFSLVPFALMG 182 (470)
Q Consensus 103 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~i~~~~~i~~~~~~~ 182 (470)
|.+||.++..+....++......+|+...++.. .++.....++++++...+|++|+|.++|++.+..++.+..+...
T Consensus 79 f~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ln~~Gv~~~~~~~~~~~~~~~~i~~~~- 155 (410)
T PRK11021 79 RVTGWLFLSVIPVGLPAALQIAAGFGQALFGWS--SWQLLLAELLTLALLWLLNLRGASSSANLQTVIALLIVALVVAI- 155 (410)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCCC--CchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH-
Confidence 999999998777766666556667777776642 23455666777888999999999999999998775443322221
Q ss_pred HHHhhccCCCccccccccccchHHHH---HHHHhhhhhHHHhhhhhccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHh
Q 012131 183 LIAIPRLKPWRWCMVDLKNVNWGLYL---NTLFWNLNYWDSISTLVGEVEDPGKTLPRALFYALILVVFAYFFPLLIGTG 259 (470)
Q Consensus 183 i~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~G~e~~~~~~~E~k~P~k~ip~ai~~~~~~~~~~y~l~~~~~~~ 259 (470)
....+.+++++...+..+.++.++. ...+|+|.|+|.+++++||+|||+||+||+++.+..++.++|++.......
T Consensus 156 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~k~iPrAi~~~~~~~~~lYil~~~~~~~ 234 (410)
T PRK11021 156 -WWAGDIKPADIPFPAPGSIEWSGLFAALGVMFWCFVGIEAFAHLASEFKNPERDFPRALMIGLLLAGLVYWACTVVVLH 234 (410)
T ss_pred -HHHcCCchhcCCCCCCCCccHHHHHHHHHHHHHHHhcHHHHHhhHHhccCccccccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1222223333322222234555544 345799999999999999999999999999999999999999999988776
Q ss_pred ccCCCcccccccHHHHHHHHhcchhHHHHHHHHHHHHhHHHHHHHhhhhhHHHHhhhhcCCCchhhhhcCCCCCChHHHH
Q 012131 260 AAPVHRELWSDGYFSVIAKLIGGVWLRTWIQGASAVSNMGMFIAEMSSDSFQLLGMAERGMLPEIFARRSQYGTPLVGIL 339 (470)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~~~~~~~r~~~P~~ai~ 339 (470)
..+.++....+.|..++.++..++.+..++.+..+++.+++.++.+.+.+|.+++|+|||.+|++|+|+||+++|++|++
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~G~~~~~ii~i~~~~s~~~~~~~~~~~~sR~l~a~ardg~lP~~~~k~~~~~tP~~ail 314 (410)
T PRK11021 235 FPAYGDKQAAAASLPGIFVQLFGGYALWVICVIGYLACFASVNIYTQSFARLVWSQAREGRPPSYLARLSARGVPVNALN 314 (410)
T ss_pred cCCCcchhhccccHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCccHHHHhhccCCCcHHHHH
Confidence 66555544455677777777766666777788888899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 012131 340 FSASGVILLSWL------SFQEIVAAENFLYCFAMIMEFIAFVKLRMQY 382 (470)
Q Consensus 340 ~~~~~~~~~~~~------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (470)
+..+++.+..+. +++.+.+..+....+.|.+..++.++++||+
T Consensus 315 ~~~~i~~~~~l~~~~~~~~~~~l~~~~~~~~li~y~~~~~a~~~l~~~~ 363 (410)
T PRK11021 315 AVLGCCAVSILLIYALGLNLEALIAYANGIFVLIYLLCMLAACKLLKGR 363 (410)
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 988877554322 5777888889889999999999999988753
|
|
| >COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-49 Score=375.86 Aligned_cols=420 Identities=19% Similarity=0.263 Sum_probs=346.7
Q ss_pred cccccccccchhhHHHhHhhhhcc-c-ccchhhHHhhhChHHHHHHHHHHHHH-HHHHHHHHHHHhhccCccCCchhHhH
Q 012131 17 PKLERFQKVSVIPLVFLIFYEVSG-G-PFGVEDSVMAAGPLLALIGFLFFPFI-WSIPEALITAEMGTMFPENGGYVVWV 93 (470)
Q Consensus 17 ~~~~~~r~l~~~~~~~~~~~~v~g-g-~~~~~~~~~~~g~~~~~~~~ii~~~~-~~~~~al~~~el~~~~p~~GG~y~~~ 93 (470)
++++++|.++.++.-++++|..+| | ..++...+..+||. .++++++++++ +.++.++ .||..+-|++|+.-+|+
T Consensus 7 ~~~~l~rgL~~RHIqlIAiGGaIGtGLFlGSg~~I~~AGPS-vlLaY~I~G~~~f~iMRaL--GEm~~~~p~~gSF~~~a 83 (462)
T COG1113 7 EEQGLKRGLKNRHIQLIAIGGAIGTGLFLGSGSAIAMAGPS-VLLAYLIAGIFVFLIMRAL--GEMLVANPVSGSFSDYA 83 (462)
T ss_pred cchhhhhhhHHHHHHHHHHhhhhhhhhhcccchhhhhhCcH-HHHHHHHHHHHHHHHHHHH--HHHHHhCCCCCcHHHHH
Confidence 344589999999999999999878 5 45688999999994 88999999964 4444454 99999999999999999
Q ss_pred HHhhCChHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 012131 94 ASALGPHWGFQQGWMKWLSGVIDNALYPVLFLDYLKSAIPALEGGFPRIVAVLLLTTALTYMNYRGLTIVGWVAIVLGVF 173 (470)
Q Consensus 94 ~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~i~~~~ 173 (470)
++.+||..||.+||.||+.|+....+...+.+.|++.++|+. |.|+.+++.+.+...+|..++|.++..+..++.+
T Consensus 84 ~~~lG~~Agf~tgW~YW~~wv~v~~ae~tAi~~y~~~WfP~v----P~Wv~al~~~~l~~~~NL~sVk~FGE~EfWfAlI 159 (462)
T COG1113 84 RKYLGPWAGFLTGWTYWFFWVLVGIAELTAIGIYLQFWFPDV----PQWVFALAAVVLLLAVNLISVKVFGELEFWFALI 159 (462)
T ss_pred HHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999974 8899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHh---hcc---C--CCc----cccccccccchHHHHHH---HHhhhhhHHHhhhhhccccCCCCchhHH
Q 012131 174 SLVPFALMGLIAI---PRL---K--PWR----WCMVDLKNVNWGLYLNT---LFWNLNYWDSISTLVGEVEDPGKTLPRA 238 (470)
Q Consensus 174 ~i~~~~~~~i~~~---~~~---~--~~~----~~~~~~~~~~~~~~~~~---~~~~~~G~e~~~~~~~E~k~P~k~ip~a 238 (470)
+++.++.+++.+. ..+ + +.. |+..+.-++|+.+++.+ .+|+|.|.|.+...+.|+|||+|.+|||
T Consensus 160 KV~aIi~~Iv~G~~ll~~g~~~~~~~~g~snl~~hGGffP~G~~g~~~~~~~v~Faf~GiElvGitA~Et~dP~k~ipkA 239 (462)
T COG1113 160 KVAAIIAFIVVGIVLLFGGFGGGGGAAGFSNLWDHGGFFPNGFLGFLSALQIVMFAFGGIELVGITAAEAKDPEKAIPKA 239 (462)
T ss_pred HHHHHHHHHHHHHHHHhhccCCCCCCccccccccCCCcCCCchHHHHHHHHHHHHHHhhHHHHHHHHHhhcChhhHHHHH
Confidence 9887777666543 211 1 111 11122346677776544 4799999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCcccccccHHHHHHHHhcchhHHHHHHHHHHHHhHHHHHHHhhhhhHHHHhhhhc
Q 012131 239 LFYALILVVFAYFFPLLIGTGAAPVHRELWSDGYFSVIAKLIGGVWLRTWIQGASAVSNMGMFIAEMSSDSFQLLGMAER 318 (470)
Q Consensus 239 i~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d 318 (470)
+-.-..-+.++|+.....+....|+++.+..++|+.+.++..+-|..+.++...++.+.+++.|+.+++++|++|++|+|
T Consensus 240 in~V~~RI~iFYvgsl~vi~~l~PW~~~~~~~SPFV~~f~~iGi~~Aa~i~N~VVLtAa~S~~NSglystsRmL~~la~~ 319 (462)
T COG1113 240 INSVIWRILIFYVGSLFVILSLYPWNQIGEDGSPFVTVFSLIGIPFAAGIMNFVVLTAALSALNSGLYSTSRMLYSLAKQ 319 (462)
T ss_pred HhhhhHHHHHHHHHHHHHHheeccccccCCCCCcHHHHHHHcCCcccccceeEEEeechhhcccccccccchHHHHHhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchhhhhcCCCCCChHHHHHHHHHHHHHHHHh-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC--CCCc
Q 012131 319 GMLPEIFARRSQYGTPLVGILFSASGVILLSWLS-------FQEIVAAENFLYCFAMIMEFIAFVKLRMQYPEA--IRPY 389 (470)
Q Consensus 319 ~~lP~~~~~~~r~~~P~~ai~~~~~~~~~~~~~~-------~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 389 (470)
|.-|+.++|+||+++|++|++++.+...+...++ |+.+.+.++......+.+..+|.+++||++|+. +.+|
T Consensus 320 g~APk~~~klsk~gVP~~ai~~s~~~~~~~V~Lny~~P~~vF~~v~s~s~~~~l~vW~~I~~s~l~~rk~~~~~~~~~~f 399 (462)
T COG1113 320 GDAPKAFAKLSKRGVPVNAILLSAVVLLLGVVLNYILPEKVFELVTSSSGLGLLFVWLMILLSQLKLRKAKPAEGKKLKF 399 (462)
T ss_pred CcccHhHhhccccCCCHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhcccCccc
Confidence 9999999999999999999999988876555543 677889999999999999999999999965443 4469
Q ss_pred ccCCchhhHHHhhhhhHHHHHHHHHh-ccc-hHHHHHHHHHHHhhhhHHHHHHHhhc
Q 012131 390 KVPLGTVGAILLCIPPTLLILVVLAL-ASP-KVMAISVIAVLIGFFIQPCMTYAEKR 444 (470)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~ 444 (470)
|+|.++... +.++...+..+..+.. ++. .....+.+++++....|...++++++
T Consensus 400 km~~~p~~~-~l~l~fl~~vlv~m~~~~~t~~~~~~~~~~~~~l~i~~~~~~~~~~~ 455 (462)
T COG1113 400 KMPLYPFTN-YLTLAFLAFVLVLMLFDPDTRISLLVGPVWLVLLGIGYLVKRKKKAR 455 (462)
T ss_pred ccccccHHH-HHHHHHHHHHHHHHHcCcccchHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 999884443 3344444444433333 222 34455555555555555555444433
|
|
| >TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-47 Score=387.81 Aligned_cols=371 Identities=24% Similarity=0.361 Sum_probs=277.0
Q ss_pred cccchhhHHHhHhhhhcccccchhhHHhhhChHHHHHHHHHHHHHHHHHHHHHHHHhhccCccCCchhHhHHHhhCChHH
Q 012131 23 QKVSVIPLVFLIFYEVSGGPFGVEDSVMAAGPLLALIGFLFFPFIWSIPEALITAEMGTMFPENGGYVVWVASALGPHWG 102 (470)
Q Consensus 23 r~l~~~~~~~~~~~~v~gg~~~~~~~~~~~g~~~~~~~~ii~~~~~~~~~al~~~el~~~~p~~GG~y~~~~~~~g~~~g 102 (470)
||++.+++..+.+..+.+ +...+ ..+..|+ ..++.|+++++++.+|.+++++||++++|++||.|.|+++++||++|
T Consensus 1 ~~~~~~~l~~~~~~~v~~-~~~~~-~~a~~G~-~~~~~~~i~~~~~~ip~al~~aEL~~~~P~~GG~y~~~~~a~G~~~g 77 (474)
T TIGR03813 1 KKLTVVTLAIMNITAVVS-LRGLP-AEAEYGL-SAAFYYLFAAIFFLVPVSLVAAELATAWPEKGGVFRWVGEAFGARWG 77 (474)
T ss_pred CcccHHHHHHHHHHHHHH-hhcch-HHHHhhH-HHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCceeeHhhhcChhHH
Confidence 468999999999877744 22223 3355777 47788999998767899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc------cc-CCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH-H
Q 012131 103 FQQGWMKWLSGVIDNALYPVLFLDYLKSAIP------AL-EGGFPRIVAVLLLTTALTYMNYRGLTIVGWVAIVLGVF-S 174 (470)
Q Consensus 103 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~-~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~i~~~~-~ 174 (470)
|..+|.+|+++....+......+..+....+ .. .+.+......+++.++.+.+|++|+|..++++.+...+ +
T Consensus 78 f~~gw~~w~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~in~~gv~~~~~i~~~~~~~~~ 157 (474)
T TIGR03813 78 FLAIFMLWAQVTIWFPTVLTFGAVSLAFIGPEATVDESLAGNKLYVLVSVLFVYWLATFIALRGVAAFTKVAKWGGIVGT 157 (474)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccCcccccccHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHH
Confidence 9999999999877665544333333332211 11 12233345566667778899999999999999876443 3
Q ss_pred HHHHHHHHHHHh---hccCCC----ccccccccccchHHH--HHHHHhhhhhHHHhhhhhccccCCCCchhHHHHHHHHH
Q 012131 175 LVPFALMGLIAI---PRLKPW----RWCMVDLKNVNWGLY--LNTLFWNLNYWDSISTLVGEVEDPGKTLPRALFYALIL 245 (470)
Q Consensus 175 i~~~~~~~i~~~---~~~~~~----~~~~~~~~~~~~~~~--~~~~~~~~~G~e~~~~~~~E~k~P~k~ip~ai~~~~~~ 245 (470)
+++++++.+.+. ...++. ++.+..++..++... ...++|+|.|+|.++..+||+|||+||+||+++.+..+
T Consensus 158 ii~~~~~ii~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~knP~r~iPrAi~~~~~~ 237 (474)
T TIGR03813 158 IIPAAILVILGISYLLTGGESQIPLRWDDAFPDFTNFDNVVLAASIFLFYAGMEMNAVHVKDVDNPDKNYPIAILIAALG 237 (474)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCCCCCHHHhCCCccccccHHHHHHHHHHHhchhHhHHHHHhccCcccchhHHHHHHHHH
Confidence 333333322221 111111 111111111122222 23457899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccCCCccccccc---HHHHHHHHhcchhHHHHHHHHHHHHhHHHHHHHhhhhhHHHHhhhhcCCCc
Q 012131 246 VVFAYFFPLLIGTGAAPVHRELWSDG---YFSVIAKLIGGVWLRTWIQGASAVSNMGMFIAEMSSDSFQLLGMAERGMLP 322 (470)
Q Consensus 246 ~~~~y~l~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP 322 (470)
+.++|++..+......|.++....+. ++.+..+..+.++...++.+..+++.+++.++.+.+.+|.+++++|||.+|
T Consensus 238 ~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~l~~~~~~~~~~sR~~~a~ardg~lP 317 (474)
T TIGR03813 238 TVLIFVLGTLAIAFIIPREDISLTQSLLVAFDNAFHWAGLSWLGPILAFALAIGVLAGVVTWVAGPSSGMLAVAKAGYLP 317 (474)
T ss_pred HHHHHHHHHHHHHhccCHhhccccccHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Confidence 99999999999888888887654333 234444555666777777777888888999999999999999999999999
Q ss_pred hhhhhcCCCCCChHHHHHHHHHHHHHHHH---------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCcccCC
Q 012131 323 EIFARRSQYGTPLVGILFSASGVILLSWL---------SFQEIVAAENFLYCFAMIMEFIAFVKLRMQYPEAIRPYKVPL 393 (470)
Q Consensus 323 ~~~~~~~r~~~P~~ai~~~~~~~~~~~~~---------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (470)
++|+|+||+++|++|++++.+++.++.+. .++.+.++.+....+.|++..++.+++|+|+|+.+||||.|.
T Consensus 318 ~~~~kv~k~~~P~~a~~~~~~~~~~l~~~~~~~~s~~~~f~~l~~~~~~~~~i~y~~~~~a~i~lr~~~~~~~rpf~~p~ 397 (474)
T TIGR03813 318 TFFQKTNKNGMPIHIMFVQGIAVSVLSVLFVVMPSVQAAFQILSQLTVILYLVMYLLMFASAIYLRYSQPDRPRPYRIPG 397 (474)
T ss_pred HHHhccCCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEecC
Confidence 99999999999999999998875433221 256678888888899999999999999999999999999987
Q ss_pred chh
Q 012131 394 GTV 396 (470)
Q Consensus 394 ~~~ 396 (470)
+..
T Consensus 398 g~~ 400 (474)
T TIGR03813 398 GLA 400 (474)
T ss_pred Ccc
Confidence 543
|
Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain. |
| >TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-47 Score=387.22 Aligned_cols=371 Identities=20% Similarity=0.273 Sum_probs=275.0
Q ss_pred cccccchhhHHHhHhhhhcccccchhhHHhhhChHHHHHHHHHHHHHHHHHHHHHHHHhhccCc-cCCchhHhHHHhhCC
Q 012131 21 RFQKVSVIPLVFLIFYEVSGGPFGVEDSVMAAGPLLALIGFLFFPFIWSIPEALITAEMGTMFP-ENGGYVVWVASALGP 99 (470)
Q Consensus 21 ~~r~l~~~~~~~~~~~~v~gg~~~~~~~~~~~g~~~~~~~~ii~~~~~~~~~al~~~el~~~~p-~~GG~y~~~~~~~g~ 99 (470)
++||++++++.++.++.+.+ +...| ..+..|.. .+.-++++++++.+|.+++++||++++| ++||.|+|+++++||
T Consensus 2 ~~~~l~~~~~~~~~~~~v~~-~~~~~-~~a~~G~~-~i~~~i~~~l~~~lp~al~~AELas~~p~~~GG~y~wv~~a~G~ 78 (507)
T TIGR00910 2 KAKKLSLFGFFAITASMVLA-VYEYP-TFATSGFH-LVFFLLLGGILWFIPVALCAAEMATVDGWEEGGIFAWVSNTLGE 78 (507)
T ss_pred CCcEeeHHHHHHHHHHHHHH-HHhhH-HHHHhhHH-HHHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCeeeehhhccCc
Confidence 46779999999999988754 23334 34556663 5556777777788999999999999997 899999999999999
Q ss_pred hHHHHHHHHHHHHHhhhHHHHHH---HHHHHHHHhcccc-CCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 012131 100 HWGFQQGWMKWLSGVIDNALYPV---LFLDYLKSAIPAL-EGGFPRIVAVLLLTTALTYMNYRGLTIVGWVAIVLGVFSL 175 (470)
Q Consensus 100 ~~g~~~g~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~i~~~~~i 175 (470)
++||.++|.+|+.+....+.... ....|... .+.. .+++...+..++++++++++|++|+|..++++.+..+..+
T Consensus 79 ~~Gf~~~~~~W~~~~~~~~~~~~~~~~~~~y~~~-~~~~~~~~~~~~i~~l~i~~~~t~~n~~G~k~~~~i~~i~~~~~~ 157 (507)
T TIGR00910 79 RFGFAAIFFGWFQIAIGFIPMIYFILGALSYILK-FPALNEDPIIKFIAALIIFWALAFSQFGGTKRTAKIAKAGFFAGI 157 (507)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CchhccCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 99999999999987755444322 22233322 2222 2334455666677888999999999999999987655433
Q ss_pred HH-HHHHHH---HHhhccCCCc----cccccc--cccchHHHHHHHHhhhhhHHHhhhhhccccCCCCchhHHHHHHHHH
Q 012131 176 VP-FALMGL---IAIPRLKPWR----WCMVDL--KNVNWGLYLNTLFWNLNYWDSISTLVGEVEDPGKTLPRALFYALIL 245 (470)
Q Consensus 176 ~~-~~~~~i---~~~~~~~~~~----~~~~~~--~~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~P~k~ip~ai~~~~~~ 245 (470)
+. ++++.+ .....+++.+ ..+..+ .+.+....+...+|+|.|+|.+++++||+|||+||+|||++.++.+
T Consensus 158 ~i~~~ili~l~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~~~faf~G~E~~a~~a~E~knP~r~~PrAi~~~~i~ 237 (507)
T TIGR00910 158 LIPAFILFALAAAYFHGGAPIAIEIDSHAFFPDFSKVGTLVVFVAFIGAYMGVEASASHINELENPGRDYPLAMILLMIA 237 (507)
T ss_pred HHHHHHHHHHHHHHHhCCCccccCCcHHhcCCCcccccHHHHHHHHHHHHhcHHHHHHHHHHccCCcccccHHHHHHHHH
Confidence 22 222222 1112222211 111111 1112223344557999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccCCCcccccccH---HHHHHHHhcc--hhHHHHHHHHHHHHhHHHHHHHhhhhhHHHHhhhhcCC
Q 012131 246 VVFAYFFPLLIGTGAAPVHRELWSDGY---FSVIAKLIGG--VWLRTWIQGASAVSNMGMFIAEMSSDSFQLLGMAERGM 320 (470)
Q Consensus 246 ~~~~y~l~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~ 320 (470)
+.++|.+..+......|.++...++.+ +.+.....++ ++...++.+..+++.+++.++++.+.||.+++++|||.
T Consensus 238 ~~~l~~l~~~~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~l~~~~~~i~~~sR~l~~~ardg~ 317 (507)
T TIGR00910 238 AICLDAIGGFSIAAVIPGKEINLSAGVIQTFQTLILHFAHEIEWLVKVIAALIAFGVLAEIASWIVGPSRGMFAAAQKGL 317 (507)
T ss_pred HHHHHHHHHHHHheecChhhcccchHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Confidence 999999988877777888776544432 3333344432 45566777788888999999999999999999999999
Q ss_pred CchhhhhcCCCCCChHHHHHHHHHHHHHHHH----------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCcc
Q 012131 321 LPEIFARRSQYGTPLVGILFSASGVILLSWL----------SFQEIVAAENFLYCFAMIMEFIAFVKLRMQYPEAIRPYK 390 (470)
Q Consensus 321 lP~~~~~~~r~~~P~~ai~~~~~~~~~~~~~----------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (470)
+|++|+|+||+++|++|++++++++.++.+. .+..+.++.++...+.|++..++++++|+|+|+.+||||
T Consensus 318 lP~~~~k~nk~~~P~~a~~~~~~i~~l~~~~~~~~~~~~~~~f~~l~~~~~~~~~i~Y~l~~~a~i~lr~k~p~~~rpf~ 397 (507)
T TIGR00910 318 LPAAFAKMNKHEVPVPLVIIQGIITSIAGAILTFGGGGNNLSFLIAIALTVVIYLCAYFLFFIGYFVLILKHPDLKRTFN 397 (507)
T ss_pred cCHHHHhhCcCCCcHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCeE
Confidence 9999999999999999999999888654322 234456778888999999999999999999999999999
Q ss_pred cCCch
Q 012131 391 VPLGT 395 (470)
Q Consensus 391 ~~~~~ 395 (470)
.|++.
T Consensus 398 ~pg~~ 402 (507)
T TIGR00910 398 IPGGI 402 (507)
T ss_pred ecCCc
Confidence 98764
|
Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009 |
| >TIGR00907 2A0304 amino acid permease (GABA permease) | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-48 Score=391.34 Aligned_cols=393 Identities=16% Similarity=0.188 Sum_probs=292.9
Q ss_pred ccccccccchhhHHHhHhhhhcc--cccch-hhHHhhhChHHHHHHHHHHHHHHHHHHHHHHHHhhccCccCCchhHhHH
Q 012131 18 KLERFQKVSVIPLVFLIFYEVSG--GPFGV-EDSVMAAGPLLALIGFLFFPFIWSIPEALITAEMGTMFPENGGYVVWVA 94 (470)
Q Consensus 18 ~~~~~r~l~~~~~~~~~~~~v~g--g~~~~-~~~~~~~g~~~~~~~~ii~~~~~~~~~al~~~el~~~~p~~GG~y~~~~ 94 (470)
++++||+++.++.++++++.+.. |++.. ...+..+||...+++|++++++ .++.+++++||++++|++||.|+|++
T Consensus 7 ~~~l~r~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~Gp~~~i~~~~i~gi~-~l~~~~~~aEl~s~~P~~Gg~y~~~~ 85 (482)
T TIGR00907 7 KPELKREFSLWSIFGFAFSISNSWTGISTTYNYGLSSGGAMSIVWGWIIAGAG-SICIALSLAELSSAYPTSGGQYFWSA 85 (482)
T ss_pred cceeecccchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCccchhHHHHHHHHH-HHHHHHHHHHHHhhCCCCccHHHHHH
Confidence 44588999999999999997632 44443 4456678997788999999996 88899999999999999999999999
Q ss_pred HhhC----ChHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccc------c-CCchHHHHHHHHHHHHHHHHHhhhhHHH
Q 012131 95 SALG----PHWGFQQGWMKWLSGVIDNALYPVLFLDYLKSAIPA------L-EGGFPRIVAVLLLTTALTYMNYRGLTIV 163 (470)
Q Consensus 95 ~~~g----~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~-~~~~~~~~~~~~~~~~~~~~n~~g~~~~ 163 (470)
+.+| +..||++||.+++.+....++.....++++...+.. + .+++...++..++++++..+|++|+|..
T Consensus 86 ~~~g~~~g~~~~f~~gW~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~in~~g~k~~ 165 (482)
T TIGR00907 86 KLAPPRQMPFASWMTGWFNLAGQVAGTASTDLSVAQLILGIVSLTTPGREYIPTRWHIFGIMIGIHLIHALINSLPTKWL 165 (482)
T ss_pred HhcccccccceeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccCchhhhhHHHHHHHHHHHHHhhHhHH
Confidence 9987 567999999999999999988888888887764321 1 1234456667777888999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccC----CCc--cccccc-----cccchHHH--HHHHHhhhhhHHHhhhhhccccC
Q 012131 164 GWVAIVLGVFSLVPFALMGLIAIPRLK----PWR--WCMVDL-----KNVNWGLY--LNTLFWNLNYWDSISTLVGEVED 230 (470)
Q Consensus 164 ~~~~~i~~~~~i~~~~~~~i~~~~~~~----~~~--~~~~~~-----~~~~~~~~--~~~~~~~~~G~e~~~~~~~E~k~ 230 (470)
++++.+..+++++.++++.+..+...+ +.+ +.+... .+.++... +....|+|.|+|.+++++||+||
T Consensus 166 ~~~~~~~~~~~i~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~fsf~G~e~~~~~a~E~kn 245 (482)
T TIGR00907 166 PRITSSAAYWSLLGFLTICITLLACKSPKFNDGKFVFTNFNNSTGGWKPGGFAFLLGLLNPAWSMTGYDGTAHMAEEIEN 245 (482)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhccCCCCCCChhhhheeeeCCCCCcCCCchhhhhhhhhhHHHhcCcchhhHHHHhcCC
Confidence 999999888887776655444332211 111 111111 12222211 22336999999999999999999
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHhccC-CCcccc--cccHHHHHHHHh-cchhHHHHHHHHHHHHhHHHHHHHhh
Q 012131 231 PGKTLPRALFYALILVVFAYFFPLLIGTGAAP-VHRELW--SDGYFSVIAKLI-GGVWLRTWIQGASAVSNMGMFIAEMS 306 (470)
Q Consensus 231 P~k~ip~ai~~~~~~~~~~y~l~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (470)
|+||+|||++.++.+..+++.+.........+ .++..+ .++|+.+.+.+. +.+++..++.+.++++.+++.++.+.
T Consensus 246 P~r~iP~Ai~~s~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (482)
T TIGR00907 246 PEVVGPRAIIGAVAIGIVTGFCFNIVLFFSMGDIDSLISSTTGQPIAQIFYNALGNKAGAIFLLCLILVTSFFCAITCMT 325 (482)
T ss_pred hhhhcCHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHhcCCCCChHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988776655544443333332 222222 235888887765 54477777788888888999999999
Q ss_pred hhhHHHHhhhhcCCCc--hhhhhcC-CCCCChHHHHHHHHHHHHHHHH------hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012131 307 SDSFQLLGMAERGMLP--EIFARRS-QYGTPLVGILFSASGVILLSWL------SFQEIVAAENFLYCFAMIMEFIAFVK 377 (470)
Q Consensus 307 ~~sR~l~~~a~d~~lP--~~~~~~~-r~~~P~~ai~~~~~~~~~~~~~------~~~~l~~~~~~~~~~~~~~~~~~~~~ 377 (470)
+.||.++++||||.+| ++|+|+| |+++|++|++++.+++.++.+. .++.+.++.++...+.|.+...+.++
T Consensus 326 ~~sR~l~a~ardg~lP~~~~f~~v~~~~~~P~~ai~~~~~i~~~~~~~~~~~~~~f~~l~~~~~~~~~i~y~~~~~~~l~ 405 (482)
T TIGR00907 326 ANSRMIYAFSRDGGLPFSPLWSRVNPRTQVPLNAVWLSAVWIILIGLLGLGSSTAFQAIFSVCTVALDVSYVIPIICKLA 405 (482)
T ss_pred HHHHHHHHHHhcCCcCchHhhceeCCCCCCcHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999 9999999 6699999999999988665543 37788999999999999998888876
Q ss_pred HHhhCCCCCCCcccCCchhhHHHhhhhhHHHHHHH
Q 012131 378 LRMQYPEAIRPYKVPLGTVGAILLCIPPTLLILVV 412 (470)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (470)
.||+ ++.+||||++...+.....+++...+....
T Consensus 406 ~~~~-~~~~~~f~lg~~~~~~~~~~~~~~~~~~v~ 439 (482)
T TIGR00907 406 KGRN-TIAPGPFWLGKYGFFVNAVAVAWTVFSSVL 439 (482)
T ss_pred hcCC-CCCCCCCcCCcchHHHHHHHHHHHHHHHhh
Confidence 4444 566789998554344444444444444433
|
|
| >TIGR03428 ureacarb_perm permease, urea carboxylase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-46 Score=380.30 Aligned_cols=395 Identities=16% Similarity=0.160 Sum_probs=295.7
Q ss_pred ccccccccchhhHHHhHhhhh-cc-cccchh-hHHhhhChHHHHHHHHHHHHHHHHHHHHHHHHhhccCccCCchhHhHH
Q 012131 18 KLERFQKVSVIPLVFLIFYEV-SG-GPFGVE-DSVMAAGPLLALIGFLFFPFIWSIPEALITAEMGTMFPENGGYVVWVA 94 (470)
Q Consensus 18 ~~~~~r~l~~~~~~~~~~~~v-~g-g~~~~~-~~~~~~g~~~~~~~~ii~~~~~~~~~al~~~el~~~~p~~GG~y~~~~ 94 (470)
++++||+++.++.++++++.+ ++ |++... ..+..+|| ..+++|+++++. .++.+++++||++++|++||.|+|++
T Consensus 8 ~~~L~R~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~Gp-~~~~~~li~~i~-~l~~als~aEL~s~~P~aGG~Y~~~~ 85 (475)
T TIGR03428 8 QPQLHRKLGRYASFAAGFSFVSILTTIFQLFGFGYGFGGP-AFFWTWPVVFVG-QLLVALNFAELAARYPISGAIYQWSR 85 (475)
T ss_pred ccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-HHHHHHHHHHHH-HHHHHHHHHHHHhhCCCCCCHHHHHH
Confidence 456899999999999999975 44 666654 45566888 588999999996 88899999999999999999999999
Q ss_pred HhhCChHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc---------ccC---CchHHHHHHHHHHHHHHHHHhhhhHH
Q 012131 95 SALGPHWGFQQGWMKWLSGVIDNALYPVLFLDYLKSAIP---------ALE---GGFPRIVAVLLLTTALTYMNYRGLTI 162 (470)
Q Consensus 95 ~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~---~~~~~~~~~~~~~~~~~~~n~~g~~~ 162 (470)
+.+||.+||++||.+++++....+........++..+++ ... ..++..+++.+++++...+|++|+|.
T Consensus 86 ~~~g~~~gf~~gW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~g~k~ 165 (475)
T TIGR03428 86 RMGGEVIGWFAGWFMIIAQIVTAAAAAIALQVVLPNIWSGFQIIGEDPTLTSPSGAANAVLLGSVLLVLTTVINCIGVEW 165 (475)
T ss_pred HHcCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCccccCCCchHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 999999999999999999987777666665555543321 111 11345677777888899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCCC---ccccc-cccccchH-HHH---HHHHhhhhhHHHhhhhhccccCCCCc
Q 012131 163 VGWVAIVLGVFSLVPFALMGLIAIPRLKPW---RWCMV-DLKNVNWG-LYL---NTLFWNLNYWDSISTLVGEVEDPGKT 234 (470)
Q Consensus 163 ~~~~~~i~~~~~i~~~~~~~i~~~~~~~~~---~~~~~-~~~~~~~~-~~~---~~~~~~~~G~e~~~~~~~E~k~P~k~ 234 (470)
.++++.+...++++.++++.+.+....+.+ .+... +....++. .++ ...+|+|.|+|.+++++||+|||+||
T Consensus 166 ~~~i~~~~~~~~i~~l~~iii~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~aeE~knP~r~ 245 (475)
T TIGR03428 166 MSRVNTIGVTCEIVGVLAVIGVLFTHAQRGPGVVFDTSVTGASPGYYGAFLVSGLMAAYVMVGFGSAGELSEETKNPRRV 245 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceeeecCCCCCCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhcCcchh
Confidence 999999999888777666655544332211 11111 11122322 222 22369999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhccCCC---cccccccHHHHHHHHhcchhHHHHHHHHHHHHhHHHHHHHhhhhhHH
Q 012131 235 LPRALFYALILVVFAYFFPLLIGTGAAPVH---RELWSDGYFSVIAKLIGGVWLRTWIQGASAVSNMGMFIAEMSSDSFQ 311 (470)
Q Consensus 235 ip~ai~~~~~~~~~~y~l~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~ 311 (470)
+||+++.++.++.+.|.+..+......+.. +....+.|.. ..+..++++. ..+.+..+++.+++.++.+.+.||.
T Consensus 246 iPrai~~s~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~g~~~~-~~~~~~~~i~~~~~~~~~~~~~sR~ 323 (475)
T TIGR03428 246 APRTILTALSVSALGGGLMILGALMAAPSLTDGRLAAEGLPYV-LSAVLDSPWG-TVLLVDVAIAILVCTLAIQTAGSRL 323 (475)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHhhcCCCchHHH-HHHHhCcHhH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999998887777776665544432 1222233432 2233344444 3444566778888999999999999
Q ss_pred HHhhhhcCCCc--hhhhhcC-CCCCChHHHHHHHHHHHHHHHH------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 012131 312 LLGMAERGMLP--EIFARRS-QYGTPLVGILFSASGVILLSWL------SFQEIVAAENFLYCFAMIMEFIAFVKLRMQY 382 (470)
Q Consensus 312 l~~~a~d~~lP--~~~~~~~-r~~~P~~ai~~~~~~~~~~~~~------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (470)
+|++||||.+| ++|+|+| |+++|++|+++..+++.++.+. .++.+.++.++...++|.+..++.+..|+|.
T Consensus 324 ~~a~Ardg~lP~s~~~~~v~~r~~tP~~A~~l~~~i~~~~~~i~~~~~~af~~l~s~~~~~~~~~Y~~~~~~~l~~~~~~ 403 (475)
T TIGR03428 324 MFSMARDGKLPASAQLSRVHPRTGTPILPSIVIGVLCIGILLINVGNSALFATLASVCIVLIYLAYLLVTVPLLLRRLRG 403 (475)
T ss_pred HHHHHhcCCCcchHHhcccCCCCCCcHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999 4899999 8999999999999998765554 3677889999999999999888777666542
Q ss_pred ------CCCCCCcccCCchhhHHHhhhhhHHHHHHHHHhc
Q 012131 383 ------PEAIRPYKVPLGTVGAILLCIPPTLLILVVLALA 416 (470)
Q Consensus 383 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (470)
+.+++||+++++.+...+.++++.++......++
T Consensus 404 ~~~~~~~~~~g~f~lg~~g~~vn~~a~~~~~~~~v~~~~P 443 (475)
T TIGR03428 404 WPRGDQTDPAGLFSLGRWGLPVNILAVVYGALMVVNLSWP 443 (475)
T ss_pred cCCccCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHCC
Confidence 1357789998776777777777777776666555
|
A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon. |
| >KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-47 Score=364.29 Aligned_cols=397 Identities=17% Similarity=0.221 Sum_probs=320.3
Q ss_pred ccccccccchhhHHHhHhhhhcc--cccc-hhhHHhhhChHHHHHHHHHHHHHHHHHHHHHHHHhhccCccCCchhHhHH
Q 012131 18 KLERFQKVSVIPLVFLIFYEVSG--GPFG-VEDSVMAAGPLLALIGFLFFPFIWSIPEALITAEMGTMFPENGGYVVWVA 94 (470)
Q Consensus 18 ~~~~~r~l~~~~~~~~~~~~v~g--g~~~-~~~~~~~~g~~~~~~~~ii~~~~~~~~~al~~~el~~~~p~~GG~y~~~~ 94 (470)
+++.||++++|+.+.++++.+.- |+-. ....+..+||....++|+++++. .++.+++++|+++++|++||.|.|+.
T Consensus 43 kqef~R~fs~~s~fg~sFs~~g~~~~i~tsm~~gl~~gG~~~~vwgwlIa~~~-~i~va~slaEl~Sa~PtsGgLy~waa 121 (550)
T KOG1289|consen 43 KQELKREFSLFSIFGISFSLMGLLPGIATSMAYGLGSGGPPTLVWGWLIAGFF-SICVALSLAELCSAMPTSGGLYFWAA 121 (550)
T ss_pred chhhhhhhhHHHHHHHHHHHhcchhhhhhheeeccccCChHHHHHHHHHHHHH-HHHHHhHHHHHHhhCCCCCcHHHHHH
Confidence 56789999999999999988621 3322 35556667888899999999995 99999999999999999999999998
Q ss_pred Hh----hCChHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccccC-----CchHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 012131 95 SA----LGPHWGFQQGWMKWLSGVIDNALYPVLFLDYLKSAIPALE-----GGFPRIVAVLLLTTALTYMNYRGLTIVGW 165 (470)
Q Consensus 95 ~~----~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~n~~g~~~~~~ 165 (470)
.. +||..+|++||...+++....++.....++.++......+ +.+..+.+..++..+..++|..+.|...+
T Consensus 122 ~lap~k~~~~~sw~~Gw~~~~g~~~~~aSi~~S~A~~i~~~v~l~np~y~~~~~~~~~v~~ai~~v~~lln~~p~r~l~~ 201 (550)
T KOG1289|consen 122 VLAPPKYGPFASWVTGWLNYLGQATGVASITYSLAQLILGAVSLTNPNYEPTNYHQFGVFEAILFVHGLLNSLPTRVLAR 201 (550)
T ss_pred HhcCcchhhHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHhhcCCCCcccceEeehHHHHHHHHHHHHhcCCcHHHHH
Confidence 76 6677789999999999999999999999998887754332 24667788889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCc-cc----------ccccc-ccchHHHHH--HHHhhhhhHHHhhhhhccccCC
Q 012131 166 VAIVLGVFSLVPFALMGLIAIPRLKPWR-WC----------MVDLK-NVNWGLYLN--TLFWNLNYWDSISTLVGEVEDP 231 (470)
Q Consensus 166 ~~~i~~~~~i~~~~~~~i~~~~~~~~~~-~~----------~~~~~-~~~~~~~~~--~~~~~~~G~e~~~~~~~E~k~P 231 (470)
++.+.....++.+++..+......+.+. +. +.+.. +.||.-.+. ...|.+.|+|+.+|++||+|||
T Consensus 202 I~~~~~~~~ll~~~i~~I~lla~~~~k~gFns~~~iF~~f~N~sgw~~~G~afil~f~~~~wt~sGyDa~~H~aEE~~nA 281 (550)
T KOG1289|consen 202 INSVSVYLNLLFLVILMITLLAASSKKTGFNSGSFIFGKFNNYSGWKNNGWAFILGFFNPAWTMSGYDAAAHMAEETKNA 281 (550)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCceeeecccccCCCCcchHHHHHhhccceeEEeccCchHHHHHHhcch
Confidence 9999998888888777776654332221 11 11111 234433332 2259999999999999999999
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHhccCCCc--c--cccccHHHHHHHHhcchhHHHHHHHHHHHHhHHHHHHHhhh
Q 012131 232 GKTLPRALFYALILVVFAYFFPLLIGTGAAPVHR--E--LWSDGYFSVIAKLIGGVWLRTWIQGASAVSNMGMFIAEMSS 307 (470)
Q Consensus 232 ~k~ip~ai~~~~~~~~~~y~l~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (470)
+|+.||+|+.+..+..+.-.+..+.+....++|. . +..+.|+.+...+..|+.....+..+.+++.+.+..+.+.+
T Consensus 282 sk~aPrgIi~s~~i~~i~gw~~~I~i~~~i~~D~~~v~ns~~g~p~~~i~~~~lg~k~~v~~~~l~ii~~f~~gi~s~~a 361 (550)
T KOG1289|consen 282 SKAAPRGIISSIAIGFILGWIIIIGIAYTIPDDLDAVLNSSLGQPIVQIYYQALGKKGAVFLLSLIIIALFFMGISSLTA 361 (550)
T ss_pred hhhccHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHhcCCCCChHHHHHHHhcCCCceEehhHHHHHHHHHhhHHHHHH
Confidence 9999999999999999998888888887777543 1 23357999999998887777778888888899999999999
Q ss_pred hhHHHHhhhhcCCCc--hhhhhcC-CCCCChHHHHHHHHHHHHHHHH------hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012131 308 DSFQLLGMAERGMLP--EIFARRS-QYGTPLVGILFSASGVILLSWL------SFQEIVAAENFLYCFAMIMEFIAFVKL 378 (470)
Q Consensus 308 ~sR~l~~~a~d~~lP--~~~~~~~-r~~~P~~ai~~~~~~~~~~~~~------~~~~l~~~~~~~~~~~~~~~~~~~~~~ 378 (470)
.||..|+.+|||.|| ++++++| ++++|.+|+++..+++.++.++ .++.+.+++.+...++|.....+.+.+
T Consensus 362 ~SR~v~afaRDg~LP~S~~~~~v~~~t~~P~nAv~l~~i~s~llgll~L~s~~Af~Alfs~a~i~l~~Ay~iP~~~rlf~ 441 (550)
T KOG1289|consen 362 SSRLVYAFARDGGLPFSKYLAKVNPQTKVPLNAVLLSCIISILLGLLILASATAFNALFSAAAIALFIAYAIPIFCRLFF 441 (550)
T ss_pred HHHHHhhhhccCCCCCcceeeecCCCCCCcHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHhheee
Confidence 999999999999999 8999999 5599999999999999876655 488899999999999999999999988
Q ss_pred HhhCCCCCCCcccCCchhhHHHhhhhhHHHHHHHHHhc
Q 012131 379 RMQYPEAIRPYKVPLGTVGAILLCIPPTLLILVVLALA 416 (470)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (470)
+|| ..+++||++++..-...++++++.+++......+
T Consensus 442 ~r~-~f~~gp~~lGk~s~p~~~i~v~w~lf~~vil~fP 478 (550)
T KOG1289|consen 442 GRD-DFRPGPFNLGKFSKPIGIIAVLWVLFMIVILCFP 478 (550)
T ss_pred ccc-ccCCCCccccccccchHHHHHHHHHHHHHHHhCC
Confidence 887 5667888776653333334467777777666655
|
|
| >TIGR00930 2a30 K-Cl cotransporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-45 Score=388.59 Aligned_cols=416 Identities=14% Similarity=0.142 Sum_probs=312.1
Q ss_pred ccccccchhhHHHhH-hhhhcc-cccchhh-HHhhhChHHHHHHHHHHHHHHHHHHHHHHHHhhcc-CccCCchhHhHHH
Q 012131 20 ERFQKVSVIPLVFLI-FYEVSG-GPFGVED-SVMAAGPLLALIGFLFFPFIWSIPEALITAEMGTM-FPENGGYVVWVAS 95 (470)
Q Consensus 20 ~~~r~l~~~~~~~~~-~~~v~g-g~~~~~~-~~~~~g~~~~~~~~ii~~~~~~~~~al~~~el~~~-~p~~GG~y~~~~~ 95 (470)
+.++++|+++.+++- +++|+| ++|..+. .+..+|....++.|++++++ ++++++||+|++++ .|++||.|.|++|
T Consensus 73 ~~~~~lG~~~GV~~~~~~nIiGv~iFlr~~~Vvg~aG~~~sll~~~la~~v-tlltaLS~seiaTng~p~aGG~Y~yisr 151 (953)
T TIGR00930 73 AGAVKFGWVMGVLVPCLLNIWGVILFLRLSWIVGQAGIGLSLLIILLCCCV-TTITGLSMSAIATNGVVKGGGAYYLISR 151 (953)
T ss_pred CCCcccceeEeeeHhhhHhHheeeeeeeHHHHHHhhhHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCCCCccHHHHHHHH
Confidence 456899999999998 899988 7777554 55578877778889999987 99999999999998 9999999999999
Q ss_pred hhCChHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccccCC-----c-hHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 012131 96 ALGPHWGFQQGWMKWLSGVIDNALYPVLFLDYLKSAIPALEG-----G-FPRIVAVLLLTTALTYMNYRGLTIVGWVAIV 169 (470)
Q Consensus 96 ~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~-~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~i 169 (470)
++||.+|+..||.+++++....+.++.++++|+..+++.... + ....+++.++++++.++|+.|+|...|+|.+
T Consensus 152 alGp~~Gf~iG~~~~la~~va~A~~~~Gf~eyl~~lf~~~~~~~~~~~~~~~~iia~i~l~ll~~In~~Gvk~~ak~q~v 231 (953)
T TIGR00930 152 SLGPEFGGSIGLIFAFANAVAVAMYVVGFAETVLDLLRENGSKIMVDPINDIRIYGTVTVVVLLGISFAGMEWENKAQVL 231 (953)
T ss_pred HhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCccccchHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 999999999999999999999999999999999998753211 1 1235677788889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhccCC-----------Cccc----cccccc-cchHHHHHHHHhhhhhHHHhhhhhccccCCCC
Q 012131 170 LGVFSLVPFALMGLIAIPRLKP-----------WRWC----MVDLKN-VNWGLYLNTLFWNLNYWDSISTLVGEVEDPGK 233 (470)
Q Consensus 170 ~~~~~i~~~~~~~i~~~~~~~~-----------~~~~----~~~~~~-~~~~~~~~~~~~~~~G~e~~~~~~~E~k~P~k 233 (470)
+.+++++.++.+.+.++..... +.+. +..... .++...+...+++|.|+|+.++++||+|||+|
T Consensus 232 l~vi~ll~ll~~iig~~~~~~~~~~~g~~~~~~~~f~~n~~p~~~~~~~~f~~~~ai~F~A~tGi~agan~sgElKnP~r 311 (953)
T TIGR00930 232 FLVIVLLSILNIFVGTIIPAFDKPAKGFFGLGNEIFSENFIPGIPGPEGGFFSLFGIFFPSVTGILAGANISGDLKDPQK 311 (953)
T ss_pred HHHHHHHHHHHHHheeeecCCCCCccceeeccchhhhhccCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHhccChhh
Confidence 9998888777666544321110 0010 000001 11444445556799999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhccCCCcccccccHH------------------H-----HHHHHhcchhHHHHHH
Q 012131 234 TLPRALFYALILVVFAYFFPLLIGTGAAPVHRELWSDGYF------------------S-----VIAKLIGGVWLRTWIQ 290 (470)
Q Consensus 234 ~ip~ai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~------------------~-----~~~~~~~~~~~~~~~~ 290 (470)
++||+++.++.+++++|++..+......+.+.....++.. . ..........+..++.
T Consensus 312 ~IPratl~ai~i~~vlYllv~~~~~~~~~~d~~~~~~~~l~~~~~g~~~f~~~~~~p~~~gL~~~~~~~~~~~~~~~lI~ 391 (953)
T TIGR00930 312 AIPKGTLLAILTTTVVYLGSVVLFGACVVRDATGDKNDTLVTNCTSAACFSECAHNTCSYGLMNNLQVMSLVSPFPPLIT 391 (953)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHccccHhhhcccchhhhcccccchhhhhhcccchhhhhcchHHHHhhhhhhHHHHH
Confidence 9999999999999999999998777666644322111110 0 0000011122456788
Q ss_pred HHHHHHhHHHHHHHhhhhhHHHHhhhhcCCCc--hhhhhcC-CCCCChHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHH
Q 012131 291 GASAVSNMGMFIAEMSSDSFQLLGMAERGMLP--EIFARRS-QYGTPLVGILFSASGVILLSWL-SFQEIVAAENFLYCF 366 (470)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP--~~~~~~~-r~~~P~~ai~~~~~~~~~~~~~-~~~~l~~~~~~~~~~ 366 (470)
++++++.+++.++++.+++|+++++||||.+| ++|+|+| |+++|++|+++++++++++.+. +++.+..+.+...++
T Consensus 392 ig~~~stlss~la~l~~asRvl~AmArDg~lP~l~~fakv~~k~~tP~~Alllt~iIa~l~ili~~l~~ia~lis~~fLl 471 (953)
T TIGR00930 392 AGIFSATLSSALASLVSAPRLFQALCKDNIYPFLQFFGKGYGKNGEPLRAYLLTAFIAEGFILIAELNTIAPIISNFFLA 471 (953)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhhcccCCCCCCcHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 88899999999999999999999999999999 8999999 8999999999999998766554 788999999999999
Q ss_pred HHHHHHHHHHHHHhhCCCCCCC-cccCCchhhHHHhhhhhHHHHHHHHHhccchHHHHHHHHHHHhhhhHHHHHHHhhc
Q 012131 367 AMIMEFIAFVKLRMQYPEAIRP-YKVPLGTVGAILLCIPPTLLILVVLALASPKVMAISVIAVLIGFFIQPCMTYAEKR 444 (470)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 444 (470)
+|.+..++.+++|.+++...|| ||. .. .++++++.+.+++.++..++ ....+.+++++.+|.+.++++.+
T Consensus 472 ~Y~lvnla~~~l~~~~~p~~RP~fk~-~~----~~~sllG~l~c~~lmf~i~w---~~ali~~~i~~~ly~~~~~~~~~ 542 (953)
T TIGR00930 472 SYALINFSCFHASLLRSPGWRPRFKY-YH----WWLSLLGASLCCAIMFLISW---WAALVAMVIALFLYKYVTYKKPD 542 (953)
T ss_pred HHHHHHHHHHHHhhccCCCCCCcccc-ch----HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhhccCCC
Confidence 9999999999988665433343 343 11 22344444444544444444 33334444455556555554433
|
|
| >COG0531 PotE Amino acid transporters [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-45 Score=370.18 Aligned_cols=377 Identities=25% Similarity=0.418 Sum_probs=316.0
Q ss_pred ccccccccchhh-HHHhHhhhhcc-cccchhhHHhhhChHHHHHHHHHHHHHHHHHHHHHHHHhhccCccCCchhHhHHH
Q 012131 18 KLERFQKVSVIP-LVFLIFYEVSG-GPFGVEDSVMAAGPLLALIGFLFFPFIWSIPEALITAEMGTMFPENGGYVVWVAS 95 (470)
Q Consensus 18 ~~~~~r~l~~~~-~~~~~~~~v~g-g~~~~~~~~~~~g~~~~~~~~ii~~~~~~~~~al~~~el~~~~p~~GG~y~~~~~ 95 (470)
+++++|+++.++ ...+..+.+.| |++..+......++. ..++|++++++ ....+++++|+++++|++||.|.|+++
T Consensus 7 ~~~~~~~l~~~~~~~~~~~~~~~~~gif~~~~~~~~~~~~-~~~~~li~~~~-~~~~a~~~~el~~~~p~~GG~y~~~~~ 84 (466)
T COG0531 7 SSELKKKLGLFDLLTALGVGSMIGSGIFALPGSAAGLAPA-AILAWLIAGII-ILFLALSYAELSSAIPSAGGAYAYAKR 84 (466)
T ss_pred chhcCCCcchHHHHHHHHHHhhHhhhhHhhhhhHHHhchH-HHHHHHHHHHH-HHHHHHHHHHHHhcCCCCCCeeeehhh
Confidence 445889999999 88888888877 777776666554443 44558888876 555599999999999999999999999
Q ss_pred hhCChHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccc---cCCc-hHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 012131 96 ALGPHWGFQQGWMKWLSGVIDNALYPVLFLDYLKSAIPA---LEGG-FPRIVAVLLLTTALTYMNYRGLTIVGWVAIVLG 171 (470)
Q Consensus 96 ~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~i~~ 171 (470)
.+||+.|+.++|.+++.+....+......++++...++. ...+ +....++.++.++...+|++|+|..++.+.+..
T Consensus 85 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ln~~G~~~~~~~~~~~~ 164 (466)
T COG0531 85 ALGPRLGFLAGWLYLLAYVIALAAIAIGAASYLSYLFPGPGLLSIGPLLIILIALALIALLTLLNLRGIKASAKINSIIT 164 (466)
T ss_pred hcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhcCCchHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 999999999999999999999999999999999888874 2222 577888889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhccCCCcccccc-c--cccchH---HHHHHHHhhhhhHHHhhhhhccccCCCCchhHHHHHHHHH
Q 012131 172 VFSLVPFALMGLIAIPRLKPWRWCMVD-L--KNVNWG---LYLNTLFWNLNYWDSISTLVGEVEDPGKTLPRALFYALIL 245 (470)
Q Consensus 172 ~~~i~~~~~~~i~~~~~~~~~~~~~~~-~--~~~~~~---~~~~~~~~~~~G~e~~~~~~~E~k~P~k~ip~ai~~~~~~ 245 (470)
+++++.++++.+......+.++..... . ....+. ..+...+|+|.|+|.+++++||+|||+|++||+++.+...
T Consensus 165 ~~~i~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~E~knp~r~ip~aii~~~~~ 244 (466)
T COG0531 165 ILKIIILLIFIILGLFAFGFSNGNLFAPFNPGGGSFGGILAAILLAFFAFTGFEAIATLAEEVKNPKRTIPRAIILSLLI 244 (466)
T ss_pred HHHHHHHHHHHHHHHHHhCccccccCCCcccccchHHHHHHHHHHHHHHhhcHHHHHHHHHHhcCccccccHHHHHHHHH
Confidence 999999988888877655544322111 1 111222 2334447999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccCCCcccc-cc-cHHHHHHHHhcchhHHHHHHHHHHHHhHHHHHHHhhhhhHHHHhhhhcCCCch
Q 012131 246 VVFAYFFPLLIGTGAAPVHRELW-SD-GYFSVIAKLIGGVWLRTWIQGASAVSNMGMFIAEMSSDSFQLLGMAERGMLPE 323 (470)
Q Consensus 246 ~~~~y~l~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~ 323 (470)
+.++|++...+.....+.++... .+ .|..+..+...+.++..++.+...++.+++.+++..+.+|.+++|+|||.+|+
T Consensus 245 ~~~~y~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~sR~~~~~ardg~lP~ 324 (466)
T COG0531 245 VLILYILGALVIVGVLPAGDLAASAPSAPLALAALFGGGNWGAIIIAILALLSLFGSLLAWILAVSRVLYAMARDGLLPK 324 (466)
T ss_pred HHHHHHHHHHHHHhCccHHHHhccCCCccHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccH
Confidence 99999999999999888754332 22 67888877777788899999999999999999999999999999999999999
Q ss_pred hhhhcC-CCCCChHHHHHHHHHHH-HHHHHh-----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCcccCCchh
Q 012131 324 IFARRS-QYGTPLVGILFSASGVI-LLSWLS-----FQEIVAAENFLYCFAMIMEFIAFVKLRMQYPEAIRPYKVPLGTV 396 (470)
Q Consensus 324 ~~~~~~-r~~~P~~ai~~~~~~~~-~~~~~~-----~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (470)
+++|+| |+++|++++++..+++. +..... ++.+.++.+....+.|.+..++.+.+|+|+++.+|++|.+....
T Consensus 325 ~~~~~~~~~~~P~~a~~~~~ii~~~l~~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (466)
T COG0531 325 FFAKVNPKGRTPVIALILTGIISLILLLLFPLSSIAFNALVSLASVAFLIAYLLVALALLVLRRKKPDLKRPFRLPLAPL 404 (466)
T ss_pred HHHHhCCCCCCCHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccccch
Confidence 999999 77899999999999988 333332 57899999999999999999999999999888889888887644
|
|
| >KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-46 Score=371.67 Aligned_cols=377 Identities=20% Similarity=0.256 Sum_probs=298.5
Q ss_pred cccccccchhhHHHhHhhhhcc-cccc-hhhHHhhhChHHHHHHHHHHHHHHHHHHHHHHHHhhccCcc-CCchhHhHHH
Q 012131 19 LERFQKVSVIPLVFLIFYEVSG-GPFG-VEDSVMAAGPLLALIGFLFFPFIWSIPEALITAEMGTMFPE-NGGYVVWVAS 95 (470)
Q Consensus 19 ~~~~r~l~~~~~~~~~~~~v~g-g~~~-~~~~~~~~g~~~~~~~~ii~~~~~~~~~al~~~el~~~~p~-~GG~y~~~~~ 95 (470)
.+.||+++.+++.++++|.++| |.+. .+..+.++||.+.++++++++++ .++.++||+|++.++|. +||.|.|++|
T Consensus 26 ~~lkR~L~~rhl~miaiGg~IGtGl~V~sG~~l~~~gp~s~iisf~i~g~~-~~~~~~~~~E~~~~~P~~aGs~~~ya~~ 104 (554)
T KOG1286|consen 26 TELKRCLKTRHLQMLAIGGTIGTGLFVGTGSALRNGGPPSLLISFIIAGIA-ALLSALCLGEFAVRFPVSAGSFYTYAYR 104 (554)
T ss_pred chhhccCCcccEEEEEecceeccceEEeccHHHhccCChhHHHHHHHHHHH-HHHHHHHHHHHheecccccccceeeeee
Confidence 4689999999999999999988 7665 56777788888899999999987 88889999999999999 5999999999
Q ss_pred hhCChHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc---------cccCCchHHHHHHHHHHHHHHHHHhhhhHH----
Q 012131 96 ALGPHWGFQQGWMKWLSGVIDNALYPVLFLDYLKSAI---------PALEGGFPRIVAVLLLTTALTYMNYRGLTI---- 162 (470)
Q Consensus 96 ~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~n~~g~~~---- 162 (470)
..||.+||..||.|++.|....++++.+.+.+++++. +.. +...+...++.+...+|+.|+|.
T Consensus 105 ~i~e~~aF~~gWny~l~y~i~~a~e~~a~s~~~~~w~~~~~~~~~~~~~----~~~~~~~~fla~~v~in~~gv~~~ge~ 180 (554)
T KOG1286|consen 105 FVGESLAFAIGWNYLLEYVIGLAAEARAWSSYLDYWTGASLIGILVDTV----NPGGWIPDFLAFILIINLFGVLAYGEV 180 (554)
T ss_pred eeCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhccccccccccCC----CCCccHHHHHHHHHHHHHHHHhhccce
Confidence 9999999999999999999999999999999999985 221 11222233344444455555554
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHHHhhccCCCccccc-------cccccchHHHH---HHHHhhhhhHHHhhhhhccccC
Q 012131 163 --VGWVAIVLGVFSLVPFALMGLIAIPRLKPWRWCMV-------DLKNVNWGLYL---NTLFWNLNYWDSISTLVGEVED 230 (470)
Q Consensus 163 --~~~~~~i~~~~~i~~~~~~~i~~~~~~~~~~~~~~-------~~~~~~~~~~~---~~~~~~~~G~e~~~~~~~E~k~ 230 (470)
...++.+++.+.++.+.+++.++..+.|+.+|... ...+.++.+.+ ...+|+|.|+|.++..+||+||
T Consensus 181 ef~~~~~kvl~~v~~~Il~iVi~~G~~~~d~~~~ig~~y~~~~g~F~p~gf~Gv~s~~~~~~fsf~G~e~va~~a~E~kN 260 (554)
T KOG1286|consen 181 EFSLAFNKILTAVGFIILAIVIIAGGGPADVKNWIGFRYWHDPGAFFPFGFKGVLSGAATAFFSFIGFELVATTAEEAKN 260 (554)
T ss_pred eehHHHHHHHHHHHHHHhheeeecCCCcCCcCCCcCccccCCCCCcCCCCcceeeHHHHHHHHHHhhHHHHHHHHHhccC
Confidence 55555555555555555555555555555455421 12344455444 3447999999999999999999
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHhccCCCc--cccc---ccHHHHHHHHhcchhHHHHHHHHHHHHhHHHHHHHh
Q 012131 231 PGKTLPRALFYALILVVFAYFFPLLIGTGAAPVHR--ELWS---DGYFSVIAKLIGGVWLRTWIQGASAVSNMGMFIAEM 305 (470)
Q Consensus 231 P~k~ip~ai~~~~~~~~~~y~l~~~~~~~~~~~~~--~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (470)
|+|++|+|+..+...+.++|++..+.....+|.++ +... .+|+....+..+-+....++.++++++..++.|+.+
T Consensus 261 P~k~IP~ai~~s~~ri~~~Yi~~~~~l~l~vpy~~~~L~~~~~~~spF~iai~~~~~k~~~~ivna~iL~~~~s~~n~~~ 340 (554)
T KOG1286|consen 261 PRKAIPKAIKQSLLRILLFYILSSIVLGLLVPYNDPRLDPGAALASPFVIAIGNAGAKYLPHIVNAGILIGLLSSLNSSL 340 (554)
T ss_pred CcccccHHHHHHHHHHHHHHHHHHHHheEEeccCccccCCCCccccHHHHHHhccCccccchhhhHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999887 4322 235553444444455667999999999999999999
Q ss_pred hhhhHHHHhhhhcCCCchhhhhcCCCCCChHHHHHHHHHHHHHHHH-h------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012131 306 SSDSFQLLGMAERGMLPEIFARRSQYGTPLVGILFSASGVILLSWL-S------FQEIVAAENFLYCFAMIMEFIAFVKL 378 (470)
Q Consensus 306 ~~~sR~l~~~a~d~~lP~~~~~~~r~~~P~~ai~~~~~~~~~~~~~-~------~~~l~~~~~~~~~~~~~~~~~~~~~~ 378 (470)
++.+|.+++||+||.+|++|+++||+++|+.|+++..+++++..+. + ++.+.++.++..++.|....++++++
T Consensus 341 y~~sR~l~amA~~G~~Pk~f~~v~~~g~P~~a~~v~~~~~~l~~~~~~~~~~~~f~~L~~~~si~tl~~w~~i~~~~i~~ 420 (554)
T KOG1286|consen 341 YAGSRVLYALAKDGLAPKFFARVDRRGVPLVAVLVSGLFGALAALNFSLGAATVFNWLVNLSSIGTLFAWTLVALSHLRF 420 (554)
T ss_pred HHhHHHHHHHHhcCCcchHHhhcCCCCCchhHHHHHHHHHHHHHHHhccccchHHHHHHHHHhHHHHHHHHHHHHHHeee
Confidence 9999999999999999999999997799999999999998776655 2 59999999999999999999999999
Q ss_pred HhhCC-----CCCCCcccCCchhhHHH
Q 012131 379 RMQYP-----EAIRPYKVPLGTVGAIL 400 (470)
Q Consensus 379 ~~~~~-----~~~~~~~~~~~~~~~~~ 400 (470)
|+..+ ..+.+||.+....+..+
T Consensus 421 R~a~~~q~~~~~~~~~~s~~~~~gs~~ 447 (554)
T KOG1286|consen 421 RYAMKVQGRSLDELPYKSPTGPYGSYY 447 (554)
T ss_pred eecccccCCCcccccccCCCCCchhHH
Confidence 87642 23446777654444333
|
|
| >PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-45 Score=366.20 Aligned_cols=362 Identities=27% Similarity=0.521 Sum_probs=303.6
Q ss_pred cchhhHHHhHhhhhcc-cccchhhHHhhhChHHHHHHHHHHHHHHHHHHHHHHHHhhccCccCCchhHhHHHhhCChHHH
Q 012131 25 VSVIPLVFLIFYEVSG-GPFGVEDSVMAAGPLLALIGFLFFPFIWSIPEALITAEMGTMFPENGGYVVWVASALGPHWGF 103 (470)
Q Consensus 25 l~~~~~~~~~~~~v~g-g~~~~~~~~~~~g~~~~~~~~ii~~~~~~~~~al~~~el~~~~p~~GG~y~~~~~~~g~~~g~ 103 (470)
+++++..+++++.+.| |++..+ ....+|+. .++.|+++++++.++.+++|+|+++++|++||.|.|+++.+||++|+
T Consensus 1 l~~~~~~~l~~~~~~g~gi~~~~-~~~~~G~~-~~~~~~i~~~~~~l~~a~~~~el~~~~p~~GG~y~~~~~~~g~~~g~ 78 (426)
T PF13520_consen 1 LGLFSAIALVIGSIIGSGIFFSP-AAASAGPS-AILAWIIAALLFFLPIALSYAELSSAYPSAGGIYVWVSRAFGPFWGF 78 (426)
T ss_dssp B-HHHHHHHHHHCHHTTTTTTHH-HHTCTGCH-HHHHHHHHHHHHHHHHHHHHHHHHTTTTSSTTHHHHHHHHH-HHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHH-HHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHhccCCCcCeeeehhhhcccccchh
Confidence 5789999999999878 666666 55667885 77888888887458999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHhcc-cc-CCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH-HHHHH
Q 012131 104 QQGWMKWLSGVIDNALYPVLFLDYLKSAIP-AL-EGGFPRIVAVLLLTTALTYMNYRGLTIVGWVAIVLGVFSL-VPFAL 180 (470)
Q Consensus 104 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~i~~~~~i-~~~~~ 180 (470)
..+|.+++.+....+.....+++++...++ .. +++++..++++++++....+|++|.|..+|++.+...+++ ..+++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~i~~~l~~ 158 (426)
T PF13520_consen 79 IVGWLYWVAYILSLASVASSFASYLLSLFGPDLNPSPWPQFLIAIILILLFTLLNLLGIKLSGKIQNILTVIKIVIPLLV 158 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTTTTGGGTCSHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccceeEEEeeccccccccchhhhhhhccccccccccchheeeeecccccceEeeechhhhhhhhhhhhhhhhhhhhhhh
Confidence 999999999999999999999999988764 32 2346777888889999999999999999999999999999 56666
Q ss_pred HHHHHhhccCCCccc-----cccccccchH---HHHHHHHhhhhhHHHhhhhhccccCCCCchhHHHHHHHHHHHHHHHH
Q 012131 181 MGLIAIPRLKPWRWC-----MVDLKNVNWG---LYLNTLFWNLNYWDSISTLVGEVEDPGKTLPRALFYALILVVFAYFF 252 (470)
Q Consensus 181 ~~i~~~~~~~~~~~~-----~~~~~~~~~~---~~~~~~~~~~~G~e~~~~~~~E~k~P~k~ip~ai~~~~~~~~~~y~l 252 (470)
+++.++...+.+... ..+..+.++. ..+...+|+|.|+|.+++++||.|| ||+||+++.+..++.++|.+
T Consensus 159 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~--k~ip~ai~~~~~~~~i~y~l 236 (426)
T PF13520_consen 159 LIILGIVSFSFSGFNSLSFSLSTFFPSGWPGFLAGFSVAFFAFSGFEAIASLAEENKN--KTIPRAIIISIIIVAIIYIL 236 (426)
T ss_dssp HHHHHHHSTTCCHHH----SHSCSSCSSSSHHHHHHHHHGGGGTTTTHHHHGGGGSSS--HHHHHHHHHHHHHHHHHHHH
T ss_pred heeEEEeeecccccccccccccccCCccccchhhHHHHHHhhcccccccccccccccc--hhheeecccchhHHHHHHhh
Confidence 666666544433222 1111222332 3334457999999999999999776 89999999999999999999
Q ss_pred HHHHHHhccCCCcccccc---cHHHHHHHHhcchhHHHHHHHHHHHHhHHHHHHHhhhhhHHHHhhhhcCCCchhhhhcC
Q 012131 253 PLLIGTGAAPVHRELWSD---GYFSVIAKLIGGVWLRTWIQGASAVSNMGMFIAEMSSDSFQLLGMAERGMLPEIFARRS 329 (470)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~~~~~~~ 329 (470)
..++.....|+++.+..+ ++.....+..+++++..++.+...++.+++.++.+.+.+|.+++++|||.+|++++|+|
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~~~~~~~ 316 (426)
T PF13520_consen 237 FSIALLGALPDDELANSSNSPSPFAVLASAVGGSWLAIIVSIAAILSLFGSINAFIFGASRLLYAMARDGVLPKWFAKVN 316 (426)
T ss_dssp HHHHHHTTSTHCHHHTTTCHHCHHHHHHHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSGGGGTTS
T ss_pred hhheeeecccchhhhcccccccccchhhccccccccccccccccccccccccchhhcchhhcccccccccchhhhhhhcc
Confidence 999999999998865443 35777888888889999999999999999999999999999999999999999999999
Q ss_pred CCCCChHHHHHHHHHHHHHHH-H------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCC-Ccc
Q 012131 330 QYGTPLVGILFSASGVILLSW-L------SFQEIVAAENFLYCFAMIMEFIAFVKLRMQYPEAIR-PYK 390 (470)
Q Consensus 330 r~~~P~~ai~~~~~~~~~~~~-~------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 390 (470)
|+++|++|+++..+++.++.. . +++.+.+..++...+.|.+..++.+++|+|+|+.+| +++
T Consensus 317 k~~~P~~a~~~~~~i~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 385 (426)
T PF13520_consen 317 KFGTPYNAIILVAVISSILLLLFLFIPQSSFDILVSLSSVGYLISYILVILAVLFLRRKRPDLKRIPYR 385 (426)
T ss_dssp SSSSCHHHHHHHHHHHHHHHHHTTTSSSSHHHHHHHHHHHHTHHHHHHHHHHHHHTHHHSCSSGH-HHH
T ss_pred ccCCceeeehhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcCCCCcc
Confidence 999999999999999865542 2 468899999999999999999999999999888766 444
|
... |
| >PRK15238 inner membrane transporter YjeM; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-43 Score=360.49 Aligned_cols=369 Identities=18% Similarity=0.243 Sum_probs=264.2
Q ss_pred cccccchhhHHHhHhhhhcccccchhhHHhhhChHHHHHHHHHHHHHHHHHHHHHHHHhhccCcc-CCchhHhHHHhhCC
Q 012131 21 RFQKVSVIPLVFLIFYEVSGGPFGVEDSVMAAGPLLALIGFLFFPFIWSIPEALITAEMGTMFPE-NGGYVVWVASALGP 99 (470)
Q Consensus 21 ~~r~l~~~~~~~~~~~~v~gg~~~~~~~~~~~g~~~~~~~~ii~~~~~~~~~al~~~el~~~~p~-~GG~y~~~~~~~g~ 99 (470)
++||++++++.+++++.++|. ...|.....+||. .++.++++++++.++.+++++||++++|+ +||.|+|+++++||
T Consensus 5 ~~~~l~~~~l~~~~~~~vig~-~~~~~~~~~~G~~-~i~~~~i~~~~~~l~~al~~aEL~s~~P~~aGG~Y~w~~~~~G~ 82 (496)
T PRK15238 5 TKKKLSLIGLILMIFTSVFGF-ANSPRAFYLMGYS-AIPWYILSAILFFIPFALMMAEYGSAFKDEKGGIYSWMNKSVGP 82 (496)
T ss_pred ccCeeeHHHHHHHHHHHHHhC-CchHHHHHHcChH-HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHcCc
Confidence 578899999999999998872 2346566778885 55667777766678999999999999997 89999999999999
Q ss_pred hHHHHHHHHHHHHHhhhHHHHHHHHHH-HHHHhccc----------cCCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 012131 100 HWGFQQGWMKWLSGVIDNALYPVLFLD-YLKSAIPA----------LEGGFPRIVAVLLLTTALTYMNYRGLTIVGWVAI 168 (470)
Q Consensus 100 ~~g~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~ 168 (470)
++||+.+|.+|..+............. .....+.. ..........+++.++++..+|.+|+|.++|+++
T Consensus 83 ~~gf~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~t~vn~~g~~~~~~i~~ 162 (496)
T PRK15238 83 KFAFIGTFMWFASYIIWMVSTASKIWIPFSTFIFGKDTTQTWHFLGLNSTQVVGILAVIWMILVTFVASKGINKIAKVTS 162 (496)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhhhhhhcccchHHHHHHHHHHHHHHHHHHccchHHHHHHHH
Confidence 999999999888777655433322111 11111111 0111122344555556889999999999999999
Q ss_pred HHHHHHHHHHH----HHHHHHhh-ccCC---Cccccc----cccc---cchHHHHHHHHhhhhhHHHhhhhhccccCCCC
Q 012131 169 VLGVFSLVPFA----LMGLIAIP-RLKP---WRWCMV----DLKN---VNWGLYLNTLFWNLNYWDSISTLVGEVEDPGK 233 (470)
Q Consensus 169 i~~~~~i~~~~----~~~i~~~~-~~~~---~~~~~~----~~~~---~~~~~~~~~~~~~~~G~e~~~~~~~E~k~P~k 233 (470)
+...+++...+ +..+.... +.+. .++.+. ++.. .++...+...+|+|.|+|.+++++||+|||+|
T Consensus 163 ~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~E~~~p~~ 242 (496)
T PRK15238 163 IGGIAVMLLNIVLLLVSIIILILNGGHFAQPIGVSSFVTSPNPAYQSPIAVLSFVVFAIFAYGGIEAVGGLVDKTENPEK 242 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCccccccHhhcccCCCCccccchHHHHHHHHHHHHHHhHHHHHHHHHhccCCCc
Confidence 87766543322 11111111 1111 111111 1100 11222334457999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhccCCCccccc------ccHHHHHHHHh-----------------cchhHHHHHH
Q 012131 234 TLPRALFYALILVVFAYFFPLLIGTGAAPVHRELWS------DGYFSVIAKLI-----------------GGVWLRTWIQ 290 (470)
Q Consensus 234 ~ip~ai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~------~~~~~~~~~~~-----------------~~~~~~~~~~ 290 (470)
++||++..+...+.++|++..+......|.++...+ +.|.. +.+.. .++++..++.
T Consensus 243 ~~p~ai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~g~~~~~~~~~g~~~~~~~~ 321 (496)
T PRK15238 243 NFPKGIIIAAIVISIGYSLAIFLWGVSTNWQQVLSNKSVNLGNITYV-LMNNLGYTLGHALGLSPAASLTLGVWFARITG 321 (496)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHhcCchhhcCCccccchhccHHH-HHHHHHHHHHHHhccchhhhhhhhHHHHHHHH
Confidence 999999999999999999998877766666654321 22221 11111 1244444666
Q ss_pred HHHHHHhHHHHHHHhhhhhHHHHhhhhcCCCchhhhhcCCCCCChHHHHHHHHHHHHHHHH-h---------HHHHHHHH
Q 012131 291 GASAVSNMGMFIAEMSSDSFQLLGMAERGMLPEIFARRSQYGTPLVGILFSASGVILLSWL-S---------FQEIVAAE 360 (470)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~~~~~~~r~~~P~~ai~~~~~~~~~~~~~-~---------~~~l~~~~ 360 (470)
+..+++.+++.+++..+.+|.+++++|||.+|++|+|+||+++|++|++++.++..++... . ++.+.++.
T Consensus 322 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~g~~P~~f~k~nk~g~P~~a~~~~~~i~~l~~~~~~~~~~~~~~~f~~l~~l~ 401 (496)
T PRK15238 322 LSMFLAYTGAFFTLSYSPLKQLIEGTPKALWPKKMTKLNKNGMPANAMWLQCIIVSVFILLVSFGGDAASAFFNILTLMA 401 (496)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHhhCccCcccHHHHhhCcCCCcHHHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHH
Confidence 7788889999999999999999999999999999999999999999999998877644322 1 56789999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCCCCCcccCC
Q 012131 361 NFLYCFAMIMEFIAFVKLRMQYPEAIRPYKVPL 393 (470)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (470)
++...+.|++.+++++++|| +|+.+|||+.+.
T Consensus 402 ~~~~li~y~~~~~a~i~~r~-~~~~~r~~~~~~ 433 (496)
T PRK15238 402 NVSMTLPYLFLAGAFPFFKK-KKDIDRPFVVFK 433 (496)
T ss_pred HHHHHHHHHHHHHHHHHHhh-ccCCCCCceecC
Confidence 99999999999999999876 577788887743
|
|
| >PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-44 Score=368.76 Aligned_cols=365 Identities=25% Similarity=0.399 Sum_probs=290.4
Q ss_pred HHhHhhhhcc-ccc-chhhHHhhhChHHHHHHHHHHHHHHHHHHHHHHHHhhccCccCCchhHhHHHhhCChHHHHHHHH
Q 012131 31 VFLIFYEVSG-GPF-GVEDSVMAAGPLLALIGFLFFPFIWSIPEALITAEMGTMFPENGGYVVWVASALGPHWGFQQGWM 108 (470)
Q Consensus 31 ~~~~~~~v~g-g~~-~~~~~~~~~g~~~~~~~~ii~~~~~~~~~al~~~el~~~~p~~GG~y~~~~~~~g~~~g~~~g~~ 108 (470)
.++++++++| |.+ ..+..+..+||...++++++++++ .+..+.+++|+++++|++||.|.|++|.+||.+|+..||.
T Consensus 3 ~~~~ig~~ig~g~f~~~g~~~~~~G~~~~~la~li~~i~-~~~~~~~~~ems~~~p~~Gg~y~y~~~~lg~~~Gf~~gw~ 81 (478)
T PF00324_consen 3 FMISIGGIIGTGLFLGSGFAIAAAGPGGAPLAYLIAGII-VLLVALSLAEMSRRFPSAGGFYAYASRGLGPALGFAAGWA 81 (478)
T ss_pred EEeeHHHHHHHHHHHHHHHHHHhcccccchhHhHHHHHH-HHhhhhhhhhhhhhhccccchhhhhhhccCCcCCceeeHH
Confidence 3456677666 444 456778888997788999999987 8888999999999999999999999999999999999999
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHh--ccccCCchHH-HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012131 109 KWLSGVIDNALYPVLFLDYLKSA--IPALEGGFPR-IVAVLLLTTALTYMNYRGLTIVGWVAIVLGVFSLVPFALMGLIA 185 (470)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~n~~g~~~~~~~~~i~~~~~i~~~~~~~i~~ 185 (470)
||+.++...+......+.+++.+ +++....+.+ .+++.++.++...+|++|+|..++++.++..++++.++.+.+..
T Consensus 82 y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~gv~~~~~~~~~~~~i~~~~li~~ii~~ 161 (478)
T PF00324_consen 82 YWLSYIAAIAAEATAAGSFLQFWGYFPGLPSTWVWGILIAIIFILLITLLNLFGVRVSGKIEFILTIIKLIALIAFIIVG 161 (478)
T ss_pred HHHHHHHHHHhhhhhhhhhhccccccccccccccccchhhhhhhhhhhhhhhhhhhccchHHHHHHHHhhhHhhhhhhhc
Confidence 99999999999998888877776 4443211111 13467778889999999999999999999999888887777766
Q ss_pred -h---hccCCCcc---cc-------cc-----ccccchHHHHH---HHHhhhhhHHHhhhhhccccCCCCchhHHHHHHH
Q 012131 186 -I---PRLKPWRW---CM-------VD-----LKNVNWGLYLN---TLFWNLNYWDSISTLVGEVEDPGKTLPRALFYAL 243 (470)
Q Consensus 186 -~---~~~~~~~~---~~-------~~-----~~~~~~~~~~~---~~~~~~~G~e~~~~~~~E~k~P~k~ip~ai~~~~ 243 (470)
. ...++.+. .. .. .+..++.+++. ..+++|.|+|+++.++||+|||||++||++..++
T Consensus 162 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~a~~a~E~k~P~k~IPra~~~~~ 241 (478)
T PF00324_consen 162 VIILFFGGGPSNGRYWGDPGSFANNFPPGFTDPSGGGFSGFFAALVFAFFAFVGFESIAILAEEAKNPRKTIPRATLLSV 241 (478)
T ss_pred ccccccccCCCcccccccccccccccccccccccccchhHHHHhhhhhhcccccccccccccccCCCchhhhhhHhhhhh
Confidence 2 11111111 00 00 11122444443 3479999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhccCCCcccccc-----cHHHHHHHHhcchhHHHHHHHHHHHHhHHHHHHHhhhhhHHHHhhhhc
Q 012131 244 ILVVFAYFFPLLIGTGAAPVHRELWSD-----GYFSVIAKLIGGVWLRTWIQGASAVSNMGMFIAEMSSDSFQLLGMAER 318 (470)
Q Consensus 244 ~~~~~~y~l~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d 318 (470)
..++++|++..+......|.++....+ +|+....+..+++++..++.+..+++.+++.++.+++.||.+++|+||
T Consensus 242 ~~~~v~y~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~i~~~~~l~s~~s~~~~~~~~~sR~l~ama~d 321 (478)
T PF00324_consen 242 LRIGVFYVLTSYALTLAVPYDNLGLTAASNSASPFVIAAQYSGGPWLAWIVNAGILISAFSSANASLYAASRLLYAMARD 321 (478)
T ss_pred hhhhhhhhhhhhhcccccCccchhhccccccccchhhhhhhcccccccceecccchhhhhhhhhhhhcccceeehhhhhh
Confidence 999999999999999888888754332 588888888899999999999999999999999999999999999999
Q ss_pred CCCchhhhhcC-CCCCChHHHHHHHHHHHHHHHH-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCC----
Q 012131 319 GMLPEIFARRS-QYGTPLVGILFSASGVILLSWL-------SFQEIVAAENFLYCFAMIMEFIAFVKLRMQYPEAI---- 386 (470)
Q Consensus 319 ~~lP~~~~~~~-r~~~P~~ai~~~~~~~~~~~~~-------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 386 (470)
|.+|+++.+.| |+++|++|++++.+++++..+. .++.+.+..++...+.|.+..++++++|++.+..+
T Consensus 322 g~lP~~~~~~~~k~~~P~~Ai~~~~~i~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~s~~~~r~~~~~~~~~~~ 401 (478)
T PF00324_consen 322 GLLPKKFFARHPKNGVPYVAILVSSIISLLVLLLGSFSPGIVFNWLLNISTISNLIVYILINISYIRFRKKFKYRGRSIS 401 (478)
T ss_pred hhhhhhhhhhhhcCCceEEEEeeehhchheeeeeccchhhHHHHHHhhhhhhhhhhHHHhhhhhhhhhhhhhcccccccc
Confidence 99995555445 9999999999999988765542 24556778888888999999999999988743332
Q ss_pred -CCcccCCchh
Q 012131 387 -RPYKVPLGTV 396 (470)
Q Consensus 387 -~~~~~~~~~~ 396 (470)
.+++.+....
T Consensus 402 ~~~~~~~~~~~ 412 (478)
T PF00324_consen 402 ELPFKSPFGPM 412 (478)
T ss_pred ccChhhhhhHH
Confidence 3666666533
|
A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane |
| >TIGR00837 araaP aromatic amino acid transport protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.1e-29 Score=248.08 Aligned_cols=355 Identities=14% Similarity=0.093 Sum_probs=259.3
Q ss_pred HHhHhhhhcc-cccchhhHHhhhChHHHHHHHHHHHHHHHHHHHHHHHHhhccCccCCchhHhHHHhhCChHHHHHHHHH
Q 012131 31 VFLIFYEVSG-GPFGVEDSVMAAGPLLALIGFLFFPFIWSIPEALITAEMGTMFPENGGYVVWVASALGPHWGFQQGWMK 109 (470)
Q Consensus 31 ~~~~~~~v~g-g~~~~~~~~~~~g~~~~~~~~ii~~~~~~~~~al~~~el~~~~p~~GG~y~~~~~~~g~~~g~~~g~~~ 109 (470)
.++.+|+++| |++.+|......|....++..++++++ +...+++++|+++++|++||.|.|+++.+||..|++.+|.+
T Consensus 3 ~~lv~gt~IGaGIl~lP~~~a~~g~~~~~~~~i~~~~~-~~~~~l~~~el~~~~p~~~~~~~~~~~~~G~~~g~~~~~~~ 81 (381)
T TIGR00837 3 ALIIAGTTIGAGMLALPTSTAGAWFIWTLLLLILLWFL-MLHSGLLLLEVYLTYPGGASFNTIAKDLLGKTGNIIAGLSL 81 (381)
T ss_pred eEEeehhhHhHHHHHHHHHHHhhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHhCCCCCCHHHHHHHHhCHHHHHHHHHHH
Confidence 3566778778 999999988775543455556666665 77889999999999999999999999999999999999999
Q ss_pred HHHHhhhHHHHHHHHHHHHHHhccc-cCCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 012131 110 WLSGVIDNALYPVLFLDYLKSAIPA-LEGGFPRIVAVLLLTTALTYMNYRGLTIVGWVAIVLGVFSLVPFALMGLIAIPR 188 (470)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~i~~~~~i~~~~~~~i~~~~~ 188 (470)
++.......++....++++..+++. .....+.....+++.+++..+|+.|.|..+|++.++...+++.++++.+.+.++
T Consensus 82 ~~~~~~~~~ay~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~G~~~~~~v~~i~~~~~l~~l~~~ii~~~~~ 161 (381)
T TIGR00837 82 LFVLYILTYAYISGGGSILSRLIGEYFGFPWSARAIVLIFTVLFGSFVWLSTSAVDRITRVLIFGKIIAFALVFSGLLPH 161 (381)
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999888888888888888887764 233345666677788889999999999999999999999998888888877777
Q ss_pred cCCCccccccccccchHHH---HHHHHhhhhhHH-HhhhhhccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHhccCCC
Q 012131 189 LKPWRWCMVDLKNVNWGLY---LNTLFWNLNYWD-SISTLVGEVEDPGKTLPRALFYALILVVFAYFFPLLIGTGAAPVH 264 (470)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~G~e-~~~~~~~E~k~P~k~ip~ai~~~~~~~~~~y~l~~~~~~~~~~~~ 264 (470)
.+.+++.+...++.++... +...+++| |+| ..+...+|.||++|++||+++.+..++.++|++......+..|.+
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~f-g~~~~i~~~~~~~~~~~k~i~raii~g~~i~~~lY~l~~~~~~g~~~~~ 240 (381)
T TIGR00837 162 VKGDLLLDVALDTSYWPYILSALPVCLTSF-GFHGNVPSLYKYYDGNVKKVKKSILIGSAIALVLYILWQLATMGNLPRS 240 (381)
T ss_pred ccHHHHhcCccccccHHHHHHHHHHHHHHH-HcccccHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHH
Confidence 7766654432212234333 33445667 564 688889999878999999999999999999999999999999988
Q ss_pred cccc------cccHHHHHHHH-hcchhHHHHHHHHHHHHhHHHHHHHhhhhhHHHHhhhhcCCCchhhhhcCCCCCChHH
Q 012131 265 RELW------SDGYFSVIAKL-IGGVWLRTWIQGASAVSNMGMFIAEMSSDSFQLLGMAERGMLPEIFARRSQYGTPLVG 337 (470)
Q Consensus 265 ~~~~------~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~~~~~~~r~~~P~~a 337 (470)
++.. +.+++.+..+. .++++...++.+...++..++.+++..+.+ |+ +++.+++.|+++.|..+
T Consensus 241 ~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~al~tS~~g~~l~~~--------d~-l~~~~~~~~~~~~~~~~ 311 (381)
T TIGR00837 241 EFLPIIAKGGNLDGLVNALQGVLKSSAIELALELFSNFALASSFLGVTLGLF--------DY-LADLFKFDDSKKGRFKT 311 (381)
T ss_pred HHHHHHHcCCChHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHH--------HH-HHHHhCCCcccCCCchh
Confidence 7542 22455555555 466677788888889999999888776555 33 55556665533336777
Q ss_pred HHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHHHHH---HHHHHHHhhCCCCCCCcccCCchhhH
Q 012131 338 ILFSASGVILLSWLSFQ-EIVAAENFLYCFAMIMEF---IAFVKLRMQYPEAIRPYKVPLGTVGA 398 (470)
Q Consensus 338 i~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (470)
.++..+..+++.....+ .+..+...+....++... +..++.|||++ +.+||.|.+....
T Consensus 312 ~~~~~~~pl~~a~~~p~~~~~~l~~~G~~~~~~~~~~p~l~~~~~r~~~~--~~~~~~~~~~~~~ 374 (381)
T TIGR00837 312 GLLTFLPPLVFALFYPEGFLYAIGYAGLAATIWAVIIPALLAWKARKKFP--NAGYRVWGGNKLL 374 (381)
T ss_pred hhhhHHhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CCCccccCChHHH
Confidence 77777777766654322 223333333223333333 33333344433 4589999986543
|
aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli. |
| >TIGR00912 2A0309 spore germination protein (amino acid permease) | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.8e-21 Score=186.99 Aligned_cols=282 Identities=17% Similarity=0.144 Sum_probs=218.0
Q ss_pred cccchhhHHHhHhhhhcc-cccchhhHHhh-hChHHHHHHHHHHHHHHHHHHHHHHHHhhccCccCCchhHhHHHhhCCh
Q 012131 23 QKVSVIPLVFLIFYEVSG-GPFGVEDSVMA-AGPLLALIGFLFFPFIWSIPEALITAEMGTMFPENGGYVVWVASALGPH 100 (470)
Q Consensus 23 r~l~~~~~~~~~~~~v~g-g~~~~~~~~~~-~g~~~~~~~~ii~~~~~~~~~al~~~el~~~~p~~GG~y~~~~~~~g~~ 100 (470)
+|+|.+|..++.++.++| |++..|..+.+ +|+ ..+++++++++. .++.+++++|+++++|+. +.+.|.++.+||.
T Consensus 1 ~~is~~q~~~l~~~~~iG~gil~~P~~~~~~a~~-~~wi~~ll~~~~-~~~~~~~~~~l~~~~p~~-~~~~~~~~~~Gk~ 77 (359)
T TIGR00912 1 DKISSKQLIFLISSTMIGSGLLTLPALVSQSAGQ-DGWISIILGGLI-IIFLLCLMIKIMSKFPEK-NFSEILSKYLGKI 77 (359)
T ss_pred CcCcHHHHHHHHHHHHHHHHHHhhhHHHHhccCC-CeeHHHHHHHHH-HHHHHHHHHHHHHHCCCC-CHHHHHHHHhhHH
Confidence 468999999999999988 78888887766 555 466888888886 888899999999999987 7999999999999
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH-H
Q 012131 101 WGFQQGWMKWLSGVIDNALYPVLFLDYLKSAIPALEGGFPRIVAVLLLTTALTYMNYRGLTIVGWVAIVLGVFSLVPF-A 179 (470)
Q Consensus 101 ~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~i~~~~~i~~~-~ 179 (470)
.|++.+|.+........+.....++++++..+.. ..|.+....++++.+...+..|.+..+|++.+...+.++.. +
T Consensus 78 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~tp~~~~~l~~l~~~~~~~~~Gi~~i~r~~~i~~~~~i~~~~~ 154 (359)
T TIGR00912 78 LGRLLSILFILYFFLIAAYLIRIFADFIKTYLLP---RTPIIVIIILIIIVSIYIVRKGIEVLLRTAEILLIIFLILFIL 154 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999888887777888888888765421 23566777788888899999999999999999888776663 4
Q ss_pred HHHHHHhhccCCCccccccccccchHHHHH----HHHhhhhhHHHhhhhhccccCCCCchhHHHHHHHHHHHHHHHHHHH
Q 012131 180 LMGLIAIPRLKPWRWCMVDLKNVNWGLYLN----TLFWNLNYWDSISTLVGEVEDPGKTLPRALFYALILVVFAYFFPLL 255 (470)
Q Consensus 180 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~G~e~~~~~~~E~k~P~k~ip~ai~~~~~~~~~~y~l~~~ 255 (470)
++........+.++..+.. +.++...+. ...|+|.|+|......+|.||| |+.||++..+..++.++|.+...
T Consensus 155 il~~~~~~~~~~~~l~P~~--~~g~~~~~~~~~~~~~~~f~g~~i~~~~~~~~~~~-~~~~k~~~~~~~~~~~ly~~~~~ 231 (359)
T TIGR00912 155 VLILLAPKLGNIKNLLPVL--ENGLSPILKGAYPVVTFAFGEIEIFFLLFPLLSKK-KKIKKSIIKAIIIGVLLYILTTF 231 (359)
T ss_pred HHHHHhcccccHHHccCcc--ccCcHHHHhhhhHHhhhhhHHHHHHHHHHHHhCCh-hhhHHHHHHHHHHHHHHHHHHHH
Confidence 4443334444555554432 233433332 3468999999999999999996 56899999999999999999999
Q ss_pred HHHhccCCCcccccccHHHHHHHHhcch-hHH---HHHHHHHHHHhHHHHHHHhhhhhHHHH
Q 012131 256 IGTGAAPVHRELWSDGYFSVIAKLIGGV-WLR---TWIQGASAVSNMGMFIAEMSSDSFQLL 313 (470)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~sR~l~ 313 (470)
...+..++++......|..++.+....+ ... .++...-..+.+.....++...++.+-
T Consensus 232 ~~i~~lg~~~~~~~~~P~~~~~~~i~~~~f~eR~e~~~~~~w~~~~f~~~~~~~~~~~~~~~ 293 (359)
T TIGR00912 232 VSISVFGGNVTKNLYWPTLELIKLINIGDFIERFELIVMTFWVFIIFVKIAFYLYIAVKGLS 293 (359)
T ss_pred HHHheecHHHhhhhcccHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999888888998888887544 333 344444445555555555666655543
|
This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases. |
| >PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.1e-19 Score=178.26 Aligned_cols=365 Identities=17% Similarity=0.164 Sum_probs=267.7
Q ss_pred ccchhhHHHhHhhhhcc-cccchhhHHhhhChHHHHHHHHHHHHHHHHHHHHHHHHhhccCccCCchhHhHHHhhCChHH
Q 012131 24 KVSVIPLVFLIFYEVSG-GPFGVEDSVMAAGPLLALIGFLFFPFIWSIPEALITAEMGTMFPENGGYVVWVASALGPHWG 102 (470)
Q Consensus 24 ~l~~~~~~~~~~~~v~g-g~~~~~~~~~~~g~~~~~~~~ii~~~~~~~~~al~~~el~~~~p~~GG~y~~~~~~~g~~~g 102 (470)
+-+.++..++..|+.+| |+.++|......|.....+..++.... ....++.++|.+.+.|+..+.-..+++.+||.++
T Consensus 2 ~~~~~~~~~li~GTaIGAGmLaLP~~~~~~Gf~~~~~~l~~~w~~-~~~s~l~~~E~~~~~~~~~~~~~~a~~~lG~~g~ 80 (394)
T PF03222_consen 2 NNSILGGVLLIAGTAIGAGMLALPIATAGAGFLPSLILLLIAWPL-MYYSGLLLAEVSLNTPEGSSLTSMAEKYLGKKGG 80 (394)
T ss_pred CchHHHHHHHHHHccHhHHHHHHHHHHHhCchHHHHHHHHHHHHH-HHHHHHHHHHHHHhCCCCCCHHHHHHHHhChHHH
Confidence 44778899999999878 999999999999987776776766664 6778999999999999988888999999999999
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHhccccC-CchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 012131 103 FQQGWMKWLSGVIDNALYPVLFLDYLKSAIPALE-GGFPRIVAVLLLTTALTYMNYRGLTIVGWVAIVLGVFSLVPFALM 181 (470)
Q Consensus 103 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~i~~~~~i~~~~~~ 181 (470)
++.+.+|.+.......++....++.+.++++... .+.+.......+..++..+.+.|.|...|++..+....++.++.+
T Consensus 81 ~~~~~~~~~~~y~ll~AYisg~g~~~~~~l~~~~~~~~~~~~~~~~f~~i~~~iv~~g~~~v~~~n~~lv~~~i~~~~~l 160 (394)
T PF03222_consen 81 IVIGISYLFLLYALLVAYISGGGSILSSLLGNQLGTDLSPWLSSLLFTIIFGGIVYFGTKAVDRINRVLVFGMIISFIIL 160 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999888899999999999988886533 345666777777888888889999999999999999999999999
Q ss_pred HHHHhhccCCCccccccccccchHH---HHHHHHhhhhhHHHhhhhhccccCCCCchhHHHHHHHHHHHHHHHHHHHHHH
Q 012131 182 GLIAIPRLKPWRWCMVDLKNVNWGL---YLNTLFWNLNYWDSISTLVGEVEDPGKTLPRALFYALILVVFAYFFPLLIGT 258 (470)
Q Consensus 182 ~i~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~G~e~~~~~~~E~k~P~k~ip~ai~~~~~~~~~~y~l~~~~~~ 258 (470)
.+...++.+.++....+....+|.. .++..+++|.....++.+.+..++-+|+++|+++.+..+..++|++...++.
T Consensus 161 ~~~~~p~~~~~~L~~~~~~~~~~~~~~~~lPv~~~Sf~f~~ivPsl~~~~~~d~~k~~~ai~~Gs~i~lv~yl~w~~~~l 240 (394)
T PF03222_consen 161 VVYLIPHWNPSNLLDAPPSPSDWSYILPALPVLVFSFGFHNIVPSLVKYLGGDPKKIRKAIIIGSLIPLVMYLLWVFSIL 240 (394)
T ss_pred HHHHhhhcCHHHhhccccccccHHHHHHHHHHHHHHHHHHhhhHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999988887664333444544 4455689999999999999999977889999999999999999999999999
Q ss_pred hccCCCccc---ccc---cHHHHHHH-HhcchhHHHHHHHHHHHHhHHHHHHHhhhhhHHHHhhhhcCCCchhhhhcCCC
Q 012131 259 GAAPVHREL---WSD---GYFSVIAK-LIGGVWLRTWIQGASAVSNMGMFIAEMSSDSFQLLGMAERGMLPEIFARRSQY 331 (470)
Q Consensus 259 ~~~~~~~~~---~~~---~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~~~~~~~r~ 331 (470)
+..|+++.. +.+ +++....+ ...+++......+...++..+|..+...+....+.. .+++.|+.
T Consensus 241 g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~i~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d---------~~k~~~~~ 311 (394)
T PF03222_consen 241 GSLPREQFAEAIAQGGNVSALVSALANVSGSPWISILGSIFAFFAIATSFLGVYLGLFDFLAD---------LFKLKNNS 311 (394)
T ss_pred hcCCHHHHHHHHhcCCChHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHcCCccc
Confidence 988887632 112 23333333 346788888888899999999988877766655432 22232211
Q ss_pred CCChHHHHHHHHHHHHHHHHhHHHH---HHHHHHHHHH-HHHHHHHHHHHHHhhCCCCCCCcccCCchhhHHH
Q 012131 332 GTPLVGILFSASGVILLSWLSFQEI---VAAENFLYCF-AMIMEFIAFVKLRMQYPEAIRPYKVPLGTVGAIL 400 (470)
Q Consensus 332 ~~P~~ai~~~~~~~~~~~~~~~~~l---~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (470)
+.-.....+..+...++.....+.. .+.+.....+ ..++.....++. |+++.+++|+.+.+......
T Consensus 312 ~~r~~~~~ltf~ppl~~a~~~p~~F~~al~~aG~~~~il~~ilP~~m~~~~--r~~~~~~~~~~~gg~~~l~~ 382 (394)
T PF03222_consen 312 SGRLKTWLLTFLPPLIFALLFPNGFLIALGYAGIGIAILLGILPALMVWKA--RKRKPKQPYRVPGGNFTLLL 382 (394)
T ss_pred cchHHHHHHHHHhHHHHHHHCcHHHHHHHHhhcHHHHHHHHHHHHHHHHHH--HcccCCCCeEEeCcHHHHHH
Confidence 1112233334444455555543333 3444422222 222222333333 33344556998877554443
|
A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region. |
| >PRK10483 tryptophan permease; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.3e-19 Score=175.96 Aligned_cols=374 Identities=14% Similarity=0.090 Sum_probs=270.5
Q ss_pred ccccccchhhHHHhHhhhhcc-cccchhhHHhhhChHHHHHHHHHHHHHHHHHHHHHHHHhhccCccCCchhHhHHHhhC
Q 012131 20 ERFQKVSVIPLVFLIFYEVSG-GPFGVEDSVMAAGPLLALIGFLFFPFIWSIPEALITAEMGTMFPENGGYVVWVASALG 98 (470)
Q Consensus 20 ~~~r~l~~~~~~~~~~~~v~g-g~~~~~~~~~~~g~~~~~~~~ii~~~~~~~~~al~~~el~~~~p~~GG~y~~~~~~~g 98 (470)
.+|++.+.++..++..|+.+| |.++.|...+..|-....+..++..+. ...+++.+.|.+.++|..-+.-..+++.+|
T Consensus 6 ~~~~~~~~~g~~~iIaGT~IGaGMLaLP~~~a~~GF~~s~~~l~~~W~~-M~~taLlllEv~l~~~~g~~~~tma~~~LG 84 (414)
T PRK10483 6 TTQTSPSLLGGVVIIGGTIIGAGMFSLPVVMSGAWFFWSMAALIFTWFC-MLHSGLMILEANLNYRIGSSFDTITKDLLG 84 (414)
T ss_pred cccCCCcHHHHHHHHHHchHhHHHHHHHHHHHhccHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCCCCCCHHHHHHHHcC
Confidence 477889999999999999877 999999999998887777777777764 777899999999999988889999999999
Q ss_pred ChHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 012131 99 PHWGFQQGWMKWLSGVIDNALYPVLFLDYLKSAIPALEGGFPRIVAVLLLTTALTYMNYRGLTIVGWVAIVLGVFSLVPF 178 (470)
Q Consensus 99 ~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~i~~~~~i~~~ 178 (470)
|.+..+.+.++.+-......+|....++.+++.++..+.+.+.....+++.+++..+.+.|.|..+|+++++...+++.+
T Consensus 85 ~~g~~i~~~s~lfl~Y~Ll~AYisg~g~il~~~l~~~~~~i~~~~~~llF~~~~~~iv~~gt~~vd~~n~~l~~~~i~~f 164 (414)
T PRK10483 85 KGWNVVNGISIAFVLYILTYAYISASGSILHHTFAEMSLNVPARAAGFGFALLVAFVVWLSTKAVSRMTAIVLGAKVITF 164 (414)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 99999999999888888888999999999988886544445677888899999999999999999999999999998888
Q ss_pred HHHHHHHhhccCCCccccccccc-cc---hHHHHHHHHhhhhhHHHhhhhhccccCCCCchhHHHHHHHHHHHHHHHHHH
Q 012131 179 ALMGLIAIPRLKPWRWCMVDLKN-VN---WGLYLNTLFWNLNYWDSISTLVGEVEDPGKTLPRALFYALILVVFAYFFPL 254 (470)
Q Consensus 179 ~~~~i~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~G~e~~~~~~~E~k~P~k~ip~ai~~~~~~~~~~y~l~~ 254 (470)
++......++.+.++..+....+ .. ....++..+++|.-...++.+.+..++-.|++.|+++.+..+..++|++..
T Consensus 165 ~~~~~~l~~~i~~~~L~~~~~~~~~~~~~~~~alPvl~~SFgfh~iIPsl~~y~~~d~~kir~~I~iGs~Iplv~yl~W~ 244 (414)
T PRK10483 165 FLTFGSLLGHVQPATLFNVAESNASYAPYLLMTLPFCLASFGYHGNVPSLMKYYGKDPKTIVKCLVYGTLMALALYTIWL 244 (414)
T ss_pred HHHHHHHHhhcCHHHHhccccccchhHHHHHHHHHHHHhhccCCCcchHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88877777887776654332112 11 234556668899988999999888876556899999999999999999999
Q ss_pred HHHHhccCCCccc----ccc--cH-HHHHHHHhcchhHHHHHHHHHHHHhHHHHHHHhhhhhHHHHhhhhcCCCchhhhh
Q 012131 255 LIGTGAAPVHREL----WSD--GY-FSVIAKLIGGVWLRTWIQGASAVSNMGMFIAEMSSDSFQLLGMAERGMLPEIFAR 327 (470)
Q Consensus 255 ~~~~~~~~~~~~~----~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~~~~~ 327 (470)
.++.+..|+++.. ..+ +. ...+.+....+....+..+...++..+|..+...+....+..+-+ +
T Consensus 245 ~~~lg~l~~~~~~~~~~~~~ni~~L~~~l~~~~~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~d~l~D~~k---------~ 315 (414)
T PRK10483 245 LATMGNIPRPEFIGIAEKGGNIDVLVQALSGVLNSRSLDLLLVVFSNFAVASSFLGVTLGLFDYLADLFG---------F 315 (414)
T ss_pred HHHhcCCCHHHHHHHHHcCCChHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---------C
Confidence 9999999977632 111 12 234444556677777888888888888888776655554443322 2
Q ss_pred cCCCCCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH----HHHHHHHHHHHHhhCCCCCCCcccCCchhhHHHhhh
Q 012131 328 RSQYGTPLVGILFSASGVILLSWLSFQEIVAAENFLYCFA----MIMEFIAFVKLRMQYPEAIRPYKVPLGTVGAILLCI 403 (470)
Q Consensus 328 ~~r~~~P~~ai~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (470)
.++++-.....+++.+..+++.+...+..+.+........ -++.....++.|+|. .+.+|+.|++.+....+..
T Consensus 316 ~~~~~~r~~~~~ltflPPl~~al~~P~~Fl~AL~yAG~~~~il~~ilP~lM~~~~Rk~~--~~~~y~v~Gg~~~l~~~~~ 393 (414)
T PRK10483 316 DDSAMGRFKTALLTFLPPVVGGLLFPNGFLYAIGYAGLAATIWAAIVPALLARASRKRF--GSPKFRVWGGKPMIVLILL 393 (414)
T ss_pred CCccccceeeehhhHhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCCCceecCCHHHHHHHHH
Confidence 1211111122334555566666665554443333333222 222222333333221 3567999988665544433
Q ss_pred hh
Q 012131 404 PP 405 (470)
Q Consensus 404 ~~ 405 (470)
.+
T Consensus 394 ~g 395 (414)
T PRK10483 394 FG 395 (414)
T ss_pred HH
Confidence 33
|
|
| >KOG1288 consensus Amino acid transporters [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.3e-21 Score=189.35 Aligned_cols=383 Identities=17% Similarity=0.145 Sum_probs=265.3
Q ss_pred ccchhhHHHhHhhh-hcc--cccchhhHHhhhChHHHHHHHHHHHHHHHHHHHHHHHHhhccCcc-CCchhHhHHHhhCC
Q 012131 24 KVSVIPLVFLIFYE-VSG--GPFGVEDSVMAAGPLLALIGFLFFPFIWSIPEALITAEMGTMFPE-NGGYVVWVASALGP 99 (470)
Q Consensus 24 ~l~~~~~~~~~~~~-v~g--g~~~~~~~~~~~g~~~~~~~~ii~~~~~~~~~al~~~el~~~~p~-~GG~y~~~~~~~g~ 99 (470)
|++.++.++.=..- |.. -..-.+..++++|-.-.++-.+++=.+ .+.+.++.+.+++.--. .||.|..++|.+||
T Consensus 66 kLgTf~GvfvPtaLsmfSiLlFLR~gfIvG~aGll~Tll~lliaY~I-~llTvlSicAIsTNGaV~GGGaYymISRsLGp 144 (945)
T KOG1288|consen 66 KLGTFEGVFVPTALSMFSILLFLRFGFIVGQAGLLKTLLMLLIAYAI-LLLTVLSICAISTNGAVRGGGAYYMISRSLGP 144 (945)
T ss_pred cccceeeEechhHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHH-HHHHHHHHhhhccCCceecCceEEEEEcccCc
Confidence 88888776543322 211 112245666777765554444444343 66678888888888664 79999999999999
Q ss_pred hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcccc-----------CCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 012131 100 HWGFQQGWMKWLSGVIDNALYPVLFLDYLKSAIPAL-----------EGGFPRIVAVLLLTTALTYMNYRGLTIVGWVAI 168 (470)
Q Consensus 100 ~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~ 168 (470)
.+|-..|..+.++.++.++.++.++.|-+.+.++.. .+.|...+-+.++..++..+.+.|...++|..+
T Consensus 145 EfGGSIGllFf~anV~~~am~isG~vE~il~nfG~~a~g~sg~~~lP~g~ww~fly~t~vl~l~~~vc~lGsalfAkas~ 224 (945)
T KOG1288|consen 145 EFGGSIGLLFFVANVFNCAMNISGFVEPILDNFGKEAQGASGSQFLPDGYWWRFLYTTLVLALCLIVCLLGSALFAKASN 224 (945)
T ss_pred ccCCeeeehhhHHHHhcchhhhhhhhHHHHHhcCccccCCcccccCCCCcchhhHHHHHHHHHHHHHHHhhHHHHHhhhh
Confidence 999999999999999999999999999888876521 123555666777777888888999999999888
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCCccccc-------------ccc-----------------------ccchHHHHHHHH
Q 012131 169 VLGVFSLVPFALMGLIAIPRLKPWRWCMV-------------DLK-----------------------NVNWGLYLNTLF 212 (470)
Q Consensus 169 i~~~~~i~~~~~~~i~~~~~~~~~~~~~~-------------~~~-----------------------~~~~~~~~~~~~ 212 (470)
+..++..+.+.-..+-.+..+..++..+. +.. .-++...++..|
T Consensus 225 i~f~~is~s~~si~iS~ifvgp~~~~ip~~~~p~~sn~t~~~~yTG~~~sTl~dNL~~~yt~dyt~~~~~~F~~~FgV~F 304 (945)
T KOG1288|consen 225 ILFVVISVSLFSIPISFIFVGPFKDPIPVPGDPILSNTTLFVHYTGLSWSTLMDNLGSHYTEDYTGGGYEDFASTFGVFF 304 (945)
T ss_pred hhhhHHHHHHhhhhheeEEeccccCCCCCCCCccccCcceeeeecCccHHHHhhhhhhhhcccccCCCceehhhhheeee
Confidence 76554443333332222222211111000 000 112333334444
Q ss_pred hhhhhHHHhhhhhccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHhccCCCcccccccHHHHHHHHhcchhHHHHHHHH
Q 012131 213 WNLNYWDSISTLVGEVEDPGKTLPRALFYALILVVFAYFFPLLIGTGAAPVHRELWSDGYFSVIAKLIGGVWLRTWIQGA 292 (470)
Q Consensus 213 ~~~~G~e~~~~~~~E~k~P~k~ip~ai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (470)
-+-.|.-+.++|++|.|+|.|.+||+.+.++..+.+.|++..++...-.|+..+..... +.++. ....+++.+.
T Consensus 305 ~g~tGimAGAnMSgELk~PSkSIP~GTl~ava~Tf~~Yvl~~flm~~t~~r~~Lq~dy~----v~~~i--sl~p~fi~iG 378 (945)
T KOG1288|consen 305 PGTTGIMAGANMSGELKAPSKSIPKGTLSAVAFTFFVYVLVIFLMGCTVPRTLLQNDYD----VMMHI--SLHPPFILIG 378 (945)
T ss_pred ccchhhhcCCCcCccccCccccCCccchHHHHHHHHHHHHHHHHhccCcchHHhhhchh----heeec--cccchHHHHH
Confidence 56678889999999999999999999999999999999999998887777665433221 11111 2223445556
Q ss_pred HHHHhHHHHHHHhhhhhHHHHhhhhcCCCc--hhhhhcC-CCCCChHHHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHHH
Q 012131 293 SAVSNMGMFIAEMSSDSFQLLGMAERGMLP--EIFARRS-QYGTPLVGILFSASGVILL-SWLSFQEIVAAENFLYCFAM 368 (470)
Q Consensus 293 ~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP--~~~~~~~-r~~~P~~ai~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~ 368 (470)
++.+.+.+..+.+.++||+|.++|||+.+| ..++|.. +.+-|+.|+.++..+.-+. .+.+++.+..+.+..++++|
T Consensus 379 i~sttlfss~s~liGasrvL~alakD~lfg~ll~fak~~s~~~nP~~av~vtw~lvqlvll~g~~N~iA~~it~~FLlty 458 (945)
T KOG1288|consen 379 ILSTTLFSSMSGLIGASRVLEALAKDDLFGGLLFFAKGSSYDGNPYVAVGVTWLLVQLVLLWGDINKIASMITMTFLLTY 458 (945)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHhhcccchhhheeeeccccCCCceeeeeHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 666677778888999999999999999999 5677777 8999999999999887544 44489999999999999999
Q ss_pred HHHHHHHHHHHhhC-CCCCCCcccCCchhhHHHhhhhhHHHHHHHHHhccc
Q 012131 369 IMEFIAFVKLRMQY-PEAIRPYKVPLGTVGAILLCIPPTLLILVVLALASP 418 (470)
Q Consensus 369 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (470)
..+.++.+.++... |+.++.||. ...-.|.++.+..+..++.-+.
T Consensus 459 ~~vNLacl~LeissAPNFRPtFky-----F~w~TclvG~l~s~~mMfvVd~ 504 (945)
T KOG1288|consen 459 GAVNLACLLLEISSAPNFRPTFKY-----FNWHTCLVGVLLSLGMMFVVDR 504 (945)
T ss_pred HHHHHHHHHhhhccCCCCCchhhh-----hhHHHHHHHHHHHHhhhheecc
Confidence 99999998888764 554444553 2222344445555554444443
|
|
| >TIGR00796 livcs branched-chain amino acid uptake carrier | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.3e-19 Score=173.11 Aligned_cols=331 Identities=12% Similarity=0.065 Sum_probs=239.1
Q ss_pred cccchhhHHhh-hCh--HHHHHHHHHHHHHHHHHHHHHHHHhhccCccCCchhHhHHHhhCChHHHHHHHHHHHHHhhh-
Q 012131 41 GPFGVEDSVMA-AGP--LLALIGFLFFPFIWSIPEALITAEMGTMFPENGGYVVWVASALGPHWGFQQGWMKWLSGVID- 116 (470)
Q Consensus 41 g~~~~~~~~~~-~g~--~~~~~~~ii~~~~~~~~~al~~~el~~~~p~~GG~y~~~~~~~g~~~g~~~g~~~~~~~~~~- 116 (470)
|-+-.|+.+.. +|. ...+++|+++++. ....+++ +.|++||.|++.++.+||+.|++.+|..++..-..
T Consensus 12 GNlIfPp~lG~~aG~~~~~a~lgf~ltgV~-lpllgl~------av~~~gG~~~~l~~~~g~~f~~lf~~~~~l~iGP~~ 84 (378)
T TIGR00796 12 GNIIFPPMLGLAAGEHVWTAALGFLLTGVG-LPLLGLI------ALALVGGGYDSLSARIGKVFGILFTVILYLTIGPLF 84 (378)
T ss_pred hHHhhhHHHHHHhCccHHHHHHHHHHHHHH-HHHHHHh------eeeecCCCHHHHHHHhChHHHHHHHHHHHHHHHhch
Confidence 55667776655 443 3567899999986 4444553 88999999999999999999999999877643332
Q ss_pred ----HHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC
Q 012131 117 ----NALYPVLFLDYLKSAIPALEGGFPRIVAVLLLTTALTYMNYRGLTIVGWVAIVLGVFSLVPFALMGLIAIPRLKPW 192 (470)
Q Consensus 117 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~i~~~~~i~~~~~~~i~~~~~~~~~ 192 (470)
.++.+...+ +..++|.........+..+++..+..++|+++.|...+++.+++-+.++.++++++.++.+...+
T Consensus 85 aiPRtaa~s~e~~--i~p~~~~~~~~~~l~i~siiff~i~~~l~~~~~k~~~~iGk~LTP~lLi~l~~lii~g~~~p~g~ 162 (378)
T TIGR00796 85 AIPRTATVSFEMG--IAPLLHSPTSLLALFIFSLIFFAVVLLLSLNPSKLIDRVGKFLTPALLVTLLALIIKALLWPAGP 162 (378)
T ss_pred hhhHHHHHHHHHH--HHhccCcccchHHHHHHHHHHHHHHHHHHcCcccHHHHhHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 223333322 44444432222344566667777778899999999999999999999988888888777543222
Q ss_pred cccc-ccccc-cchHHHHHHHHhhhh-------hHHHhhhhhc-cccCCCCchhHHHHHHH-HHHHHHHHHHHHHHHhcc
Q 012131 193 RWCM-VDLKN-VNWGLYLNTLFWNLN-------YWDSISTLVG-EVEDPGKTLPRALFYAL-ILVVFAYFFPLLIGTGAA 261 (470)
Q Consensus 193 ~~~~-~~~~~-~~~~~~~~~~~~~~~-------G~e~~~~~~~-E~k~P~k~ip~ai~~~~-~~~~~~y~l~~~~~~~~~ 261 (470)
...+ .+..+ ..+...+....+.+. |+-.+..+.+ |.|||+|+.|+++..+. ..+...|+...++..+..
T Consensus 163 ~~~~~~~~~~~~~f~~g~l~GY~TmD~laal~fg~iiv~~i~~~g~~~~~~~~~~~i~~G~ia~i~l~~vY~~L~~lGa~ 242 (378)
T TIGR00796 163 ILAASGAYASQQAFSKGFLEGYLTMDALAALVFGIIVVNAIRSRGVTKPKKITKYTIKAGLIAAVLLAFIYLSLFYLGAT 242 (378)
T ss_pred cCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 1111 11111 234433333345666 7777778887 99999999999999998 678888888888888877
Q ss_pred CCCccc---ccccHHHHHHHHhcchhHHHHHHHHHHHHhHHHHHHHhhhhhHHHHhhhhcCCCchhhhhcCCCCCChHHH
Q 012131 262 PVHREL---WSDGYFSVIAKLIGGVWLRTWIQGASAVSNMGMFIAEMSSDSFQLLGMAERGMLPEIFARRSQYGTPLVGI 338 (470)
Q Consensus 262 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~~~~~~~r~~~P~~ai 338 (470)
+.++.. +.+..+.++.+...|+.+..++.+.+.++++++.++...+.++ +|++.+. ++|+++.
T Consensus 243 ~~~~~~~~~~~~~~l~~~a~~~~G~~G~~ll~i~v~lACLtT~iGli~~~a~-------------~f~~~~~-k~~y~~~ 308 (378)
T TIGR00796 243 SAAAAGDAVNGAQILSAYSQHLFGSLGSFLLGLIITLACLTTAVGLTTACSE-------------YFHKLVP-KLSYKTW 308 (378)
T ss_pred cHhhhcccCCcHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHhcC-CCCHHHH
Confidence 765443 3456788888999999999999999999999999998877444 5566653 3999988
Q ss_pred HHHHHHH-HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhCCCCCCCcccCCc
Q 012131 339 LFSASGV-ILLSWLSFQEIVAAENFLYCFAMIMEFIAFVK--LRMQYPEAIRPYKVPLG 394 (470)
Q Consensus 339 ~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 394 (470)
++...+. .++....++.+++++.-...+.|-......+. +||+.|+.+|+||.+..
T Consensus 309 v~~~~l~s~~ia~~Gl~~Ii~~~~PvL~~~YP~~i~lill~ll~~~~~~~~~~y~~~~~ 367 (378)
T TIGR00796 309 VIVFTLFSFIVANLGLTQIISISIPVLMIIYPLAIVLILLSFLRKLWDSKRAVYQITLI 367 (378)
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCeeehHHH
Confidence 7666654 55666689999998888888888777766655 78888888899997544
|
transmembrane helical spanners. |
| >PRK09664 tryptophan permease TnaB; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.2e-19 Score=174.15 Aligned_cols=372 Identities=13% Similarity=0.057 Sum_probs=262.3
Q ss_pred chhhHHHhHhhhhcc-cccchhhHHhhhChHHHHHHHHHHHHHHHHHHHHHHHHhhccCccCCchhHhHHHhhCChHHHH
Q 012131 26 SVIPLVFLIFYEVSG-GPFGVEDSVMAAGPLLALIGFLFFPFIWSIPEALITAEMGTMFPENGGYVVWVASALGPHWGFQ 104 (470)
Q Consensus 26 ~~~~~~~~~~~~v~g-g~~~~~~~~~~~g~~~~~~~~ii~~~~~~~~~al~~~el~~~~p~~GG~y~~~~~~~g~~~g~~ 104 (470)
+.+...++..|+.+| |.++.|...+..|-.+..+..++..+. ...+++.+.|.+.++|..-+.-..+++.+||.+..+
T Consensus 10 ~~~gg~~iIaGT~IGAGMLaLP~~~a~~Gf~~s~~ll~~~w~~-M~~t~LlllEv~l~~~~g~~l~tma~~~LG~~g~~i 88 (415)
T PRK09664 10 SAFWGVMVIAGTVIGGGMFALPVDLAGAWFFWGAFILIIAWFS-MLHSGLLLLEANLNYPVGSSFNTITKDLIGNTWNII 88 (415)
T ss_pred chhhhhHHhhhccHhHHHHHHHHHHhcccHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCCCCCCHHHHHHHHcChHHHHH
Confidence 667788889998877 999999999999987777777777775 778899999999999988889999999999999999
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHhccc-cCCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 012131 105 QGWMKWLSGVIDNALYPVLFLDYLKSAIPA-LEGGFPRIVAVLLLTTALTYMNYRGLTIVGWVAIVLGVFSLVPFALMGL 183 (470)
Q Consensus 105 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~i~~~~~i~~~~~~~i 183 (470)
.+.++.+-......+|....++.++..++. .+.+.+.....+.+.+++..+.+.|.|...|.++++...+++.+++...
T Consensus 89 ~~~~~~fl~Y~Ll~AYisggG~il~~~l~~~~~~~i~~~~~~llF~~~~~~~v~~gt~~vd~~nr~l~~~~ii~f~~~~~ 168 (415)
T PRK09664 89 SGITVAFVLYILTYAYISANGAIISETISMNLGYHANPRIVGICTAIFVASVLWISSLAASRITSLFLGLKIISFVIVFG 168 (415)
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHhhhccCCCcHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 999998888888889999999999888764 2334455667788999999999999999999999999888888888888
Q ss_pred HHhhccCCCccccccccc--c----chHHHHHHHHhhhhhHHHhhhhhccccCCCCchhHHHHHHHHHHHHHHHHHHHHH
Q 012131 184 IAIPRLKPWRWCMVDLKN--V----NWGLYLNTLFWNLNYWDSISTLVGEVEDPGKTLPRALFYALILVVFAYFFPLLIG 257 (470)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~--~----~~~~~~~~~~~~~~G~e~~~~~~~E~k~P~k~ip~ai~~~~~~~~~~y~l~~~~~ 257 (470)
...++.+.++....+... . .....++.++++|.-...++.+....++-.|+++|+++.+..+..++|++...+.
T Consensus 169 ~l~~~i~~~~L~~~~~~~~~~~~~~~i~~alPVl~~SFgfh~iIPsl~~y~~~d~~~~~kaIl~Gs~IpLviY~~W~~~i 248 (415)
T PRK09664 169 SFFFQVDYSILRDATSTTAGTSYFPYIFMALPVCLASFGFHGNIPSLIICYGKRKDKLIKSVVFGSLLALVIYLFWLYCT 248 (415)
T ss_pred HHhhcccHHHHhcCccccccchHHHHHHHHHHHHHHhhhCCCcchHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888877765433211 1 1233456667888888888888888876668899999999999999999999999
Q ss_pred HhccCCCccc---ccccHH----HHHHHHhcchhHHHHHHHHHHHHhHHHHHHHhhhhhHHHHhhhhcCCCchhhhhcCC
Q 012131 258 TGAAPVHREL---WSDGYF----SVIAKLIGGVWLRTWIQGASAVSNMGMFIAEMSSDSFQLLGMAERGMLPEIFARRSQ 330 (470)
Q Consensus 258 ~~~~~~~~~~---~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~~~~~~~r 330 (470)
.+..|+++.. ..+... ....+...+++...+..+...++..+|..+...+....+.. .+++.++
T Consensus 249 lG~lp~~~~~~~~~~g~nv~~l~~s~~~~~~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~D~l~D---------~~~~~~~ 319 (415)
T PRK09664 249 MGNIPRESFKAIISSGGNVDSLVKSFLGTKQHGIIEFCLLVFSNLAVASSFFGVTLGLFDYLAD---------LFKIDNS 319 (415)
T ss_pred hcCCCHHHHHHHHHcCCCchHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HhCCCCc
Confidence 9988877632 111112 22333345667777777787888888877765544443332 2323221
Q ss_pred CCCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH----HHHHHHHHHHHHhhCCCCCCCcccCCchhhHHHhhhhhH
Q 012131 331 YGTPLVGILFSASGVILLSWLSFQEIVAAENFLYCFA----MIMEFIAFVKLRMQYPEAIRPYKVPLGTVGAILLCIPPT 406 (470)
Q Consensus 331 ~~~P~~ai~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (470)
++-......++.+..+++.+...+..+.+...+.... -++...-.++.|+| +.+.+||.|++.....++...+.
T Consensus 320 ~~~r~~~~~ltflPPl~~al~~P~gFl~AL~yAG~~~~il~~ilP~lM~~~~Rk~--~~~~~y~v~GG~~~l~~~~~~g~ 397 (415)
T PRK09664 320 HGGRFKTVLLTFLPPALLYLIFPNGFIYGIGGAGLCATIWAVIIPAVLAIKARKK--FPNQMFTVWGGNLIPAIVILFGI 397 (415)
T ss_pred cccceeeehhhHhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--cCCCCceeeCCHHHHHHHHHHHH
Confidence 1112222334555666666665554443333333222 22222233333322 23568999999776655444444
Q ss_pred HHH
Q 012131 407 LLI 409 (470)
Q Consensus 407 ~~~ 409 (470)
+.+
T Consensus 398 ~ii 400 (415)
T PRK09664 398 TVI 400 (415)
T ss_pred HHH
Confidence 333
|
|
| >KOG2082 consensus K+/Cl- cotransporter KCC1 and related transporters [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.3e-20 Score=185.46 Aligned_cols=385 Identities=17% Similarity=0.150 Sum_probs=258.9
Q ss_pred hhHHhhhChHHHHHHHHHHHHH--HHHHHHHHHHHhhccCcc-CCchhHhHHHhhCChHHHHHHHHHHHHHhhhHHHHHH
Q 012131 46 EDSVMAAGPLLALIGFLFFPFI--WSIPEALITAEMGTMFPE-NGGYVVWVASALGPHWGFQQGWMKWLSGVIDNALYPV 122 (470)
Q Consensus 46 ~~~~~~~g~~~~~~~~ii~~~~--~~~~~al~~~el~~~~p~-~GG~y~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~~ 122 (470)
.......|-.+..-++++..++ .++.++.+++.+++.--. +||.|..++|.+||.+|-.+|.+++++..+..+.+..
T Consensus 135 iRLtWvVG~AGv~q~fllv~iCC~cTmLTaISmSAIATNGVVpaGGsYfmISRsLGPEFGgAVGlcFYLgtT~AaaMYIl 214 (1075)
T KOG2082|consen 135 IRLTWVVGMAGVGQGFLLVFICCLCTMLTAISMSAIATNGVVPAGGSYFMISRSLGPEFGGAVGLCFYLGTTVAAAMYIL 214 (1075)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCeeEEEecccCccccceeeehhhhhhHHHHHHHHH
Confidence 3333334444444555554443 356678888888887554 7999999999999999999999999999999999999
Q ss_pred HHHHHHHH-hccccC--------Cc-----hHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 012131 123 LFLDYLKS-AIPALE--------GG-----FPRIVAVLLLTTALTYMNYRGLTIVGWVAIVLGVFSLVPFALMGLIAIPR 188 (470)
Q Consensus 123 ~~~~~~~~-~~~~~~--------~~-----~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~i~~~~~i~~~~~~~i~~~~~ 188 (470)
+..+.+.. .+|... .. -...+-..+++++..++.+.|+|...++..++..+.++.++.+...++-.
T Consensus 215 GaVEi~L~Yi~P~aaIf~~~~a~~~~~am~nnlRvYGT~~Li~m~lIVf~GVK~Vnk~A~vfL~CVILSIlaiyaG~i~~ 294 (1075)
T KOG2082|consen 215 GAVEIFLTYIFPAAAIFGAEDAHDEAAAMLNNLRVYGTVFLILMALIVFVGVKFVNKFAPVFLACVILSILAIYAGGIKS 294 (1075)
T ss_pred hHHHHHHHHHccHhhhcCccccccchhhhhcceehHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhhh
Confidence 99986654 555321 00 11235566778888999999999999999988888877776666554411
Q ss_pred c-C--------------------C---------Cc---------------------------cc---cccc------ccc
Q 012131 189 L-K--------------------P---------WR---------------------------WC---MVDL------KNV 202 (470)
Q Consensus 189 ~-~--------------------~---------~~---------------------------~~---~~~~------~~~ 202 (470)
. + . .+ .+ ..++ ..+
T Consensus 295 ~~~~~~~~vC~lgnr~L~~~~~d~c~k~~~~~~~~~~~~L~~~fC~~~~~~~~c~~y~~~nnvt~i~GipG~a~g~~~eN 374 (1075)
T KOG2082|consen 295 IFDPPGFPVCMLGNRLLSSSIFDNCSKTETVDNDNVTSFLWGLFCNSNNDSATCDEYFSKNNVTEIQGIPGLASGVFKEN 374 (1075)
T ss_pred ccCCCCCeeEEecceeccccccccchhhhccccccHHHHHHHhhCCCCCCCcccccccccccceeecCCcchhhhhhhhh
Confidence 0 0 0 00 00 0000 000
Q ss_pred chHHH-----------------------------------HHHH-HhhhhhHHHhhhhhccccCCCCchhHHHHHHHHHH
Q 012131 203 NWGLY-----------------------------------LNTL-FWNLNYWDSISTLVGEVEDPGKTLPRALFYALILV 246 (470)
Q Consensus 203 ~~~~~-----------------------------------~~~~-~~~~~G~e~~~~~~~E~k~P~k~ip~ai~~~~~~~ 246 (470)
-|..+ +.++ |-+.+|.-+.++.+++.|||+|.+|-+.+.+.+.+
T Consensus 375 lws~Ylekg~~v~~g~~~~~~~~~~~~~~V~~Di~tSFtlLvgIfFPsVTGImaGSNrSGDLkDaQkSIPvGTI~AilTT 454 (1075)
T KOG2082|consen 375 LWSAYLEKGEIVEYGVPSADIADSSGHPYVVQDITTSFTLLVGIFFPSVTGIMAGSNRSGDLKDAQKSIPVGTIAAILTT 454 (1075)
T ss_pred hhHhhhcccccccCCCCCCCcccccCCCceeecchhhHHHHHHhhccccceeeecCCCCccccchhhcCchhhhHHHHHH
Confidence 01100 1112 34667888999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccCCCcccccccHHHHHHHHh-c--chh-HHHHHHHHHHHHhHHHHHHHhhhhhHHHHhhhhcCCCc
Q 012131 247 VFAYFFPLLIGTGAAPVHRELWSDGYFSVIAKLI-G--GVW-LRTWIQGASAVSNMGMFIAEMSSDSFQLLGMAERGMLP 322 (470)
Q Consensus 247 ~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP 322 (470)
..+|+...+.+.+......+...- -..+-..+ . -.| -.+++.+..+++.+++...++.++.|+|.+.|||+++|
T Consensus 455 S~vYlssv~lFGa~i~~~vLRDKf--G~sv~g~lVva~laWPsPwVi~IGsFlST~GAgLQsLtgAPRLLQAIAkD~IiP 532 (1075)
T KOG2082|consen 455 SFVYLSSVVLFGACIEGVVLRDKF--GQSVGGNLVVATLAWPSPWVIVIGSFLSTCGAGLQSLTGAPRLLQAIAKDDIIP 532 (1075)
T ss_pred HHHHHHHHHHHHHhhcchhhhhhh--hhhccCcEEEEEecCCCceeeehhHHHHHhHHHHhhhcCcHHHHHHHhhcCccc
Confidence 999998877776665522211000 00000111 0 011 24567788999999999999999999999999999999
Q ss_pred --hhhhhcCCCCCChHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhCCCCCCCcccCCchhhH
Q 012131 323 --EIFARRSQYGTPLVGILFSASGVILLS-WLSFQEIVAAENFLYCFAMIMEFIAFVKL-RMQYPEAIRPYKVPLGTVGA 398 (470)
Q Consensus 323 --~~~~~~~r~~~P~~ai~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 398 (470)
+.|++.++++-|.+|++++.+++-... +.+.+.+....+.+++.+|.++.++.... --|-|+++++||.--|
T Consensus 533 fL~~F~~~~~ngEPt~aLlLT~~Ice~gILigslD~iApilsmFFLMCY~fVNLaCavqtLLrtPnWRPRfkyyHW---- 608 (1075)
T KOG2082|consen 533 FLAPFGHGKANGEPTWALLLTAIICECGILIGSLDLIAPILSMFFLMCYLFVNLACAVQTLLRTPNWRPRFKYYHW---- 608 (1075)
T ss_pred hhhhhccccCCCCccHHHHHHHHHHHhhheeechhHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCCCccchhhhh----
Confidence 899998899999999999999985444 44788999999999999999999755433 3355665555554333
Q ss_pred HHhhhhhHHHHHHHHHhccchHHHHHHHHHHHhhhhHHHHHH
Q 012131 399 ILLCIPPTLLILVVLALASPKVMAISVIAVLIGFFIQPCMTY 440 (470)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 440 (470)
...+++...+...++..+|.- ..+..++...+|=+..+
T Consensus 609 -~LSflG~sLC~~iMF~~SWyy---AlvAm~~a~~IYKYiEy 646 (1075)
T KOG2082|consen 609 -SLSFLGASLCLAIMFISSWYY---ALVAMLIAGVIYKYIEY 646 (1075)
T ss_pred -HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhh
Confidence 334444455555555555533 33333334444444333
|
|
| >PRK15132 tyrosine transporter TyrP; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=8.9e-19 Score=171.01 Aligned_cols=369 Identities=15% Similarity=0.130 Sum_probs=265.1
Q ss_pred chhhHHHhHhhhhcc-cccchhhHHhhhChHHHHHHHHHHHHHHHHHHHHHHHHhhccCccCCchhHhHHHhhCChHHHH
Q 012131 26 SVIPLVFLIFYEVSG-GPFGVEDSVMAAGPLLALIGFLFFPFIWSIPEALITAEMGTMFPENGGYVVWVASALGPHWGFQ 104 (470)
Q Consensus 26 ~~~~~~~~~~~~v~g-g~~~~~~~~~~~g~~~~~~~~ii~~~~~~~~~al~~~el~~~~p~~GG~y~~~~~~~g~~~g~~ 104 (470)
+.++..++..|+.+| |++++|...+.+|....++..++.... ....++.++|...+.|..-+.-..+++.+||..+++
T Consensus 4 ~~~g~~~li~GTaIGAGmLaLPi~~~~~Gf~~~~~~li~~w~~-m~~t~l~l~Ev~~~~~~~~~~~~~a~~~LG~~g~~i 82 (403)
T PRK15132 4 RTLGSIFIVAGTTIGAGMLAMPLAAAGVGFSVTLILLIGLWAL-MCYTALLLLEVYQHVPADTGLGTLAKRYLGRYGQWL 82 (403)
T ss_pred cHHHHHHHHHhcchhHHHHHHHHHHHhChHHHHHHHHHHHHHH-HHHHHHHHHHHHcCCCCCCCHHHHHHHHhChHHHHH
Confidence 667888889998777 999999999999987666666666653 566688899998888877788899999999999999
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHhccc-cCCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 012131 105 QGWMKWLSGVIDNALYPVLFLDYLKSAIPA-LEGGFPRIVAVLLLTTALTYMNYRGLTIVGWVAIVLGVFSLVPFALMGL 183 (470)
Q Consensus 105 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~i~~~~~i~~~~~~~i 183 (470)
.+.+|.+.......+|....++.+.+.++. ...+.+.....+.+.++...+.+.|.|...|+++++....++.++....
T Consensus 83 ~~~~y~fl~y~ll~AYisg~g~il~~~l~~~~~~~i~~~~~~l~F~~~~~~iv~~g~~~v~~~n~~L~~~~ii~~~~~~~ 162 (403)
T PRK15132 83 TGFSMMFLMYALTAAYISGAGELLASSISDWTGISMSPTAGVLLFTLVAGGVVCVGTSSVDLFNRFLFSAKIIFLVVMLA 162 (403)
T ss_pred HHHHHHHHHHHHHHHHHhCcHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999998888999999977777666543 2222244456666777777788889999999999999998888888888
Q ss_pred HHhhccCCCccccccccccchHHHHHHHHhhhhhHHHhhhhhccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 012131 184 IAIPRLKPWRWCMVDLKNVNWGLYLNTLFWNLNYWDSISTLVGEVEDPGKTLPRALFYALILVVFAYFFPLLIGTGAAPV 263 (470)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~P~k~ip~ai~~~~~~~~~~y~l~~~~~~~~~~~ 263 (470)
...++.+.++....+.+.......++.++++|.-...++.+....++-+|+++|+++.+..+..++|++...++.+..|+
T Consensus 163 ~l~p~~~~~~L~~~~~~~~~~~~~iPvl~~SFgfh~iIpsl~~y~~~~~~~~~k~i~~Gs~i~li~yl~W~~~~lg~l~~ 242 (403)
T PRK15132 163 LMMPHIHKVNLLTLPLQQGLALSAIPVIFTSFGFHGSVPSIVSYMGGNIRKLRWVFIIGSAIPLVAYIFWQLATLGSIDS 242 (403)
T ss_pred HHHHhcCHHHHhcCCccccHHHHHHHHHHHHhhCCcccHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH
Confidence 88898888877543211112445566678999999999999999888789999999999999999999999999999998
Q ss_pred Cccc----cc---ccHHHHHHHHhcchhHHHHHHHHHHHHhHHHHHHHhhhhhHHHHhhhhcCCCchhhhhcCCCCCChH
Q 012131 264 HREL----WS---DGYFSVIAKLIGGVWLRTWIQGASAVSNMGMFIAEMSSDSFQLLGMAERGMLPEIFARRSQYGTPLV 336 (470)
Q Consensus 264 ~~~~----~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~~~~~~~r~~~P~~ 336 (470)
++.. +. ++.+..+.+...+++...+..+...++..+|..+...+....+..+-+. .++.+.-..
T Consensus 243 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d~~~~---------~~~~~~r~~ 313 (403)
T PRK15132 243 TTFMGLLANHAGLNGLLQALREVVASPHVELAVHLFADLALATSFLGVALGLFDYLADLFQR---------RNTVGGRLQ 313 (403)
T ss_pred HHHHHHHHccCchHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---------CccccCCch
Confidence 7632 11 1345555666677888888888888899999888777666666554322 111111122
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHH----HHHHHHHHHHHHHHHhhCCCCCCCcccCCchhhHHHhhhhhH
Q 012131 337 GILFSASGVILLSWLSFQEIVAAENFLY----CFAMIMEFIAFVKLRMQYPEAIRPYKVPLGTVGAILLCIPPT 406 (470)
Q Consensus 337 ai~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (470)
...+..+...++...+.+.+..+..... .+..++.....++.|++++ +++||.|++......+.+.+.
T Consensus 314 ~~~l~flppli~a~~~P~~F~~al~~aG~~~ail~~ilP~~m~~~~r~~~~--~~~y~v~gg~~~~~~v~~~G~ 385 (403)
T PRK15132 314 TGLITFLPPLAFALFYPRGFVMALGYAGVALAVLALLLPSLLVWQSRKQNP--QAGYRVKGGRPALALVFLCGI 385 (403)
T ss_pred hehhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC--CCCccCCCChHHHHHHHHHHH
Confidence 2345555556666665554443333332 2233333344444443321 467999988665444443333
|
|
| >PHA02764 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.7e-19 Score=159.74 Aligned_cols=272 Identities=14% Similarity=0.164 Sum_probs=168.5
Q ss_pred cccccccchhhHHHhHhhhhccccc-chhhHHhhh--ChHHHHHHHHHHHHHHHHHHHHHHHHhhccCccCCchhHhHHH
Q 012131 19 LERFQKVSVIPLVFLIFYEVSGGPF-GVEDSVMAA--GPLLALIGFLFFPFIWSIPEALITAEMGTMFPENGGYVVWVAS 95 (470)
Q Consensus 19 ~~~~r~l~~~~~~~~~~~~v~gg~~-~~~~~~~~~--g~~~~~~~~ii~~~~~~~~~al~~~el~~~~p~~GG~y~~~~~ 95 (470)
..+-|+.+.+|.+...++.+.+|.. +.+..+... |+ ..+++|++++++ +++.++||+|+++++|++||.|.|.+|
T Consensus 8 SGLVREvs~lDAF~~Nl~~m~~Gi~Is~~~l~a~l~pG~-nlLLAWLLGGLl-ALPgAL~YAELGSAmPrAGGdYVYISR 85 (399)
T PHA02764 8 SGIIKSFNILDIFSINLLYMGILSGISYPLFVSSLLKNV-NLLFAILIGAVF-EIPLLLMYYKLTTKFPLNGGDYAYIRT 85 (399)
T ss_pred CCceeeccHHHHHHHHHHhhccchhHHHHHHHhhcCCch-hHHHHHHHHHHH-HHHHHHHHHHHHhhCCCCCceEEEhHH
Confidence 3478999999999999999866542 334433332 33 477899999997 999999999999999999999999999
Q ss_pred hhCChHHHHHHHHHHHHHhhhHHHHHHHHH-H-HHHHhccccCCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 012131 96 ALGPHWGFQQGWMKWLSGVIDNALYPVLFL-D-YLKSAIPALEGGFPRIVAVLLLTTALTYMNYRGLTIVGWVAIVLGVF 173 (470)
Q Consensus 96 ~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~i~~~~ 173 (470)
++||.+|++.||..|..+....++.+-... + .++..+ .... ...-......+-..|.|...|...+....
T Consensus 86 AFGP~~GFLvG~a~WLtl~~G~Pal~~l~~~~~~i~~~~-------~~f~-~~~s~~~i~~~i~~~~~~~~~~v~il~~a 157 (399)
T PHA02764 86 AFSSKFYTIFGISLWLTYVLSQPILGDLVLLNFNIQNQF-------EQFL-IVESLFPIVLLIIANKKIYAKIVDILAIA 157 (399)
T ss_pred hhCccHHHHHHHHHHHHHHhhcchhhheeeeeeeeHHHH-------HHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 999999999999999988876665433211 0 011111 1111 11111222223334567777766654443
Q ss_pred HHHHHHHHHHHHhhccCCCcccccccccc-chHHHHHHHHhhhhhHHHhhhhhccccCCCCchhHHHHHHHHHHHHHHHH
Q 012131 174 SLVPFALMGLIAIPRLKPWRWCMVDLKNV-NWGLYLNTLFWNLNYWDSISTLVGEVEDPGKTLPRALFYALILVVFAYFF 252 (470)
Q Consensus 174 ~i~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~G~e~~~~~~~E~k~P~k~ip~ai~~~~~~~~~~y~l 252 (470)
..+ . ..+...+..|+...+.+-+ .....+-...-+|.-.|+..+.++|.||-+|....+-..+..++.++-++
T Consensus 158 ~~i---~---aif~~~~s~n~~~~~f~~snt~~~a~~~~l~~~~fi~a~~y~~~ei~n~~k~~~~gyf~s~~~~~~~~ii 231 (399)
T PHA02764 158 QII---I---AIFIAFKSFNFQYQNFTISNTLLSALLFDLSAFIFINAISYIAGEIKNIKKSSMIGYFVSYGIVAILSII 231 (399)
T ss_pred HHH---H---HHHhhccceeEEEcceeehHHHHHHHHHHHHHHHHhccHHHHHHHhhcchhhhhhhhHHHHHHHHHHHHH
Confidence 333 1 1111222222222221111 11111122235667789999999999999998887777777776655554
Q ss_pred HHHHHHhccCCCcccccccHHHHHHHHhcchhHHHHHHHHHHHHhHHHHHHHhhhhhHHHHhhhhcCCCchhhhhcCCCC
Q 012131 253 PLLIGTGAAPVHRELWSDGYFSVIAKLIGGVWLRTWIQGASAVSNMGMFIAEMSSDSFQLLGMAERGMLPEIFARRSQYG 332 (470)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~~~~~~~r~~ 332 (470)
-++ + + +..++ +.+....++-.....-..||+.++|+.|+.+|++|+|.+| +
T Consensus 232 ~sy--------~-----n--~~il~-------------~~~~~w~~~y~~~~~~~~srli~~~~fd~~lpe~f~k~~~-n 282 (399)
T PHA02764 232 DSY--------S-----N--LNILF-------------ALMPIWFFSYMPIANKIQSRLIQTMSFDKVLPEKFSKINP-N 282 (399)
T ss_pred Hhh--------h-----h--HHHHH-------------HHHHHHHHhheeeecchHHHHHHHHHhhhhchHHHhccCC-C
Confidence 441 0 0 00110 1111222222222233579999999999999999999864 6
Q ss_pred CCh
Q 012131 333 TPL 335 (470)
Q Consensus 333 ~P~ 335 (470)
+|.
T Consensus 283 v~~ 285 (399)
T PHA02764 283 VLL 285 (399)
T ss_pred cee
Confidence 777
|
|
| >TIGR00814 stp serine transporter | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.1e-18 Score=166.90 Aligned_cols=285 Identities=14% Similarity=0.052 Sum_probs=212.1
Q ss_pred hHhhhhcc-cccchhhHHhhhChHHHHHHHHHHHHHHHHHHHHHHHHhhccCcc-CCchhHhHHHhhCChHHHHHHHHHH
Q 012131 33 LIFYEVSG-GPFGVEDSVMAAGPLLALIGFLFFPFIWSIPEALITAEMGTMFPE-NGGYVVWVASALGPHWGFQQGWMKW 110 (470)
Q Consensus 33 ~~~~~v~g-g~~~~~~~~~~~g~~~~~~~~ii~~~~~~~~~al~~~el~~~~p~-~GG~y~~~~~~~g~~~g~~~g~~~~ 110 (470)
...|+++| |++..|...+..|....+++.+++..+ ....+..+.|.....|+ ..+.+.++++.+||.+|++.++.|+
T Consensus 11 ~l~gt~IGaGiL~LP~~ag~~G~i~~li~~l~~~pl-~~~~~~ll~~~~l~~~~p~~~i~~~~~~~fGk~~G~ii~~lY~ 89 (397)
T TIGR00814 11 GLYGTAIGAGVLFLPIQAGLGGLWVLVLMAIIAYPL-TYFGHRALARFLLSSKNPCEDITEVVEEHFGKNWGILITLLYF 89 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCCCCCCCHHHHHHHHcCHHHHHHHHHHHH
Confidence 34455556 888888876555543333333333322 22334445565555555 6799999999999999999999999
Q ss_pred HHHhhhHHHHHHHHHHHHHHhccc-cC-CchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 012131 111 LSGVIDNALYPVLFLDYLKSAIPA-LE-GGFPRIVAVLLLTTALTYMNYRGLTIVGWVAIVLGVFSLVPFALMGLIAIPR 188 (470)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~i~~~~~i~~~~~~~i~~~~~ 188 (470)
+.......+++....+.+.+++.. .. +..+..+...+++++...++..|.|...|++.++....++.++++.+...++
T Consensus 90 ~~~~~i~~aY~~~~~~~~~~fl~~~~~~~~p~~~i~~lilv~il~~iv~~G~~~i~r~~~il~~~~ii~l~~l~~~lip~ 169 (397)
T TIGR00814 90 FAIYPILLIYSVAITNDSASFLVNQLGTAPPLRGLLSLALILILVAIMSFGEKLLFKIMGPLVFPLVLILVLLSLYLIPH 169 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999888888877777666543 21 2234556777777788999999999999999999999999998888888999
Q ss_pred cCCCccccccccccc---hHHHHHHHHhhhhhHHHhhhhh----ccccCC---CCchhHHHHHHHHHHHHHHHHHHHHHH
Q 012131 189 LKPWRWCMVDLKNVN---WGLYLNTLFWNLNYWDSISTLV----GEVEDP---GKTLPRALFYALILVVFAYFFPLLIGT 258 (470)
Q Consensus 189 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~G~e~~~~~~----~E~k~P---~k~ip~ai~~~~~~~~~~y~l~~~~~~ 258 (470)
.+.++....+..... ....++..+|+|.|+|..+.++ ||.+|| +|+..|++..+..+..++|+...+.+.
T Consensus 170 ~~~~~L~~~p~~~~~~~~i~~alpv~~~SF~~~~iIssl~~~~~~~~~~~~~~~~k~~k~i~~~~~i~~~~y~~~~~s~~ 249 (397)
T TIGR00814 170 WNGANLTTFPSFNGFLKTLWLTIPVMVFSFNHSPIISSFAISYREEYGDKEFAERKCLRIMKGASLILVATVMFFVFSCV 249 (397)
T ss_pred cCHHHHhcCCcccchHHHHHHHHHHHHHHHHccccchHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 888887543322223 3344556689999999999998 777765 577889999999999999999999999
Q ss_pred hccCCCcccc----cccHHHHHHHHhcchhHHHHHHHHHHHHhHHHHHHHhhhhhHHHHhhhhc
Q 012131 259 GAAPVHRELW----SDGYFSVIAKLIGGVWLRTWIQGASAVSNMGMFIAEMSSDSFQLLGMAER 318 (470)
Q Consensus 259 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d 318 (470)
+..++++... .-+.+..+.+...++....+......++..+|..+...+....+..+-++
T Consensus 250 ~~l~~~~~~~a~~~nis~Ls~l~~~~~~~~i~~~~~~f~~~Ai~tSFlG~~lg~~e~l~~l~~~ 313 (397)
T TIGR00814 250 LSLSPAEAVAAKEQNISILSYLANHFNAAWISYAGPIVAIVAISKSFFGHYLGAREGLNGIVLN 313 (397)
T ss_pred ccCCHHHHHHHHHcCcHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 9988887422 22345566667788888888888888888899888888877777666643
|
The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli. |
| >COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.3e-15 Score=150.79 Aligned_cols=282 Identities=15% Similarity=0.110 Sum_probs=226.2
Q ss_pred cccccchhhHHHhHhhhhcc-cccchhhHHhhhChHHHHHHHHHHHHHHHHHHHHHHHHhhccCccCC-chhHhHHHhhC
Q 012131 21 RFQKVSVIPLVFLIFYEVSG-GPFGVEDSVMAAGPLLALIGFLFFPFIWSIPEALITAEMGTMFPENG-GYVVWVASALG 98 (470)
Q Consensus 21 ~~r~l~~~~~~~~~~~~v~g-g~~~~~~~~~~~g~~~~~~~~ii~~~~~~~~~al~~~el~~~~p~~G-G~y~~~~~~~g 98 (470)
.+++-+..+......++.+| |+...|.....+|-...++..++.+.+ +....+++.|...+.|+.. +.+.-+++.+|
T Consensus 5 ~~~~~s~~~~vl~l~gT~IGAGvL~lP~a~~~~G~~~~l~~l~i~~~~-t~~s~~~l~~~~~~~~~~~~~~~~~~~~~~G 83 (415)
T COG0814 5 MKKTSSDLGGVLILAGTAIGAGVLFLPVAFGGGGFWPGLLLLIIAWPL-TYLSLLLLLEALLSSPNGKASITSLVEDYLG 83 (415)
T ss_pred ccCCcchHHHHHHHHccccccchhhhhHHhcCCcHHHHHHHHHHHHHH-HHHHHHHHHHHHHhCCCCcccHHHHHHHHhC
Confidence 55666788888889999888 999999999999987777777777775 7777999999999999984 99999999999
Q ss_pred ChHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccc-cCCc-hHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 012131 99 PHWGFQQGWMKWLSGVIDNALYPVLFLDYLKSAIPA-LEGG-FPRIVAVLLLTTALTYMNYRGLTIVGWVAIVLGVFSLV 176 (470)
Q Consensus 99 ~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~i~~~~~i~ 176 (470)
|.++++.+.++.+.......++....++.+...++. .+.. .++.+..+++...+..+.+.|.+...|....+....++
T Consensus 84 ~~~~~li~~s~~~~~~~~~~aY~~~~g~~l~~~~~~~~~~~~~~r~~~~lif~~~~~~l~~~~~~~~lk~ts~l~~~~v~ 163 (415)
T COG0814 84 KKGGILIGLSYFFALYGLLVAYIVGIGNLLASFLGNQFGLNPLPRKLGSLIFALVLAFLSWLGTLAVLKITSLLVFGKVI 163 (415)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHhhcccCCcchHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999988875 3322 67788888888888889999999999999999999999
Q ss_pred HHHHHHHHHhhccCCCcccccc----ccccchHHHHHHHHhhhhhHHHhhhhhccccCCCCc-hhHHHHHHHHHHHHHHH
Q 012131 177 PFALMGLIAIPRLKPWRWCMVD----LKNVNWGLYLNTLFWNLNYWDSISTLVGEVEDPGKT-LPRALFYALILVVFAYF 251 (470)
Q Consensus 177 ~~~~~~i~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~P~k~-ip~ai~~~~~~~~~~y~ 251 (470)
.++++.....++.++++....+ .....+...++..+++|.+....+.+.+|.|++.|+ ++|++..+..+..++|+
T Consensus 164 ~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ipv~vfsF~~h~~i~si~~~~~~~~~~~~~k~~~~~~~~~~vlyi 243 (415)
T COG0814 164 YLVLLVVYLIPHWNPANLFALPSASQSFWKYLLLAIPVFVFSFGFHGNIPSLVNYMRKNSKKAVRKAILIGSLIALVLYI 243 (415)
T ss_pred HHHHHHHHHhcccCHHHHhcccccchhhHHHHHHHhhHHHhhhhCCccchHHHHHhccchhHHHHHHHHHHHHHHHHHHH
Confidence 9999999888888776654432 223344556677789999999999999999988877 99999999999999999
Q ss_pred HHHHHHHhccCCCccc------ccccHHH-HHHHHhcchhHHHHHHHHHHHHhHHHHHH
Q 012131 252 FPLLIGTGAAPVHREL------WSDGYFS-VIAKLIGGVWLRTWIQGASAVSNMGMFIA 303 (470)
Q Consensus 252 l~~~~~~~~~~~~~~~------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (470)
...+...+..+.+..+ +.++... ...+....+.......+..+++..++..+
T Consensus 244 ~~~~~~~~~~~~~~~~~il~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~Ai~tSFlg 302 (415)
T COG0814 244 LVGFFVFGCFGSLVFGNILAAKEQNISLLSALAGVINSPILSIALNIFALFAIATSFLG 302 (415)
T ss_pred HHHHHHHHhcCcccHHHHHHccCchHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHhC
Confidence 9999999888877421 1122222 23333455555555666666666555443
|
|
| >PRK13629 threonine/serine transporter TdcC; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=5.3e-16 Score=150.67 Aligned_cols=359 Identities=13% Similarity=0.040 Sum_probs=245.1
Q ss_pred hHhhhhcc-cccchhhHHhhhChHHHHHHHHHHHHHHHHHHHHHHHHhhccC-ccCCchhHhHHHhhCChHHHHHHHHHH
Q 012131 33 LIFYEVSG-GPFGVEDSVMAAGPLLALIGFLFFPFIWSIPEALITAEMGTMF-PENGGYVVWVASALGPHWGFQQGWMKW 110 (470)
Q Consensus 33 ~~~~~v~g-g~~~~~~~~~~~g~~~~~~~~ii~~~~~~~~~al~~~el~~~~-p~~GG~y~~~~~~~g~~~g~~~g~~~~ 110 (470)
...|+.+| |+..+|-..+..|....++..++...+ ....+..++|..... |+..+.-..+++.+|+.+|.+.+.+|.
T Consensus 27 ~l~GTAIGAGmLfLPI~~g~~Gf~p~lillll~~p~-m~~s~l~L~e~~L~~~~~~~~i~~v~~~~lG~~g~~i~~ilYf 105 (443)
T PRK13629 27 GLFGTAIGAGVLFFPIRAGFGGLIPILLMLVLAYPI-AFYCHRALARLCLSGSNPSGNITETVEEHFGKTGGVVITFLYF 105 (443)
T ss_pred HHHHHHHhHHHHHHHHHHhcchHHHHHHHHHHHHHH-HHHHHHHHHHHHHccCCCCCCHHHHHHHHcChhHHHHHHHHHH
Confidence 33444445 999999999999987776666666654 555678889999998 444566678999999999999999999
Q ss_pred HHHhhhHHHHHHHHHHHHHHhccc-cCC-chHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 012131 111 LSGVIDNALYPVLFLDYLKSAIPA-LEG-GFPRIVAVLLLTTALTYMNYRGLTIVGWVAIVLGVFSLVPFALMGLIAIPR 188 (470)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~i~~~~~i~~~~~~~i~~~~~ 188 (470)
+.......+|.....+.+.+++.. .+. +.++.+..++++.++..+.+.|.|...|++.++....++.++.+.+..+|+
T Consensus 106 f~ly~ll~aY~~~itn~l~sfl~~ql~~~~~~r~l~slifv~~l~~iv~~G~~~v~kv~~~Lv~~~i~~l~~l~~~LiP~ 185 (443)
T PRK13629 106 FAICPLLWIYGVTITNTFMTFWENQLGFAPLNRGFVALFLLLLMAFVIWFGKDLMVKVMSYLVWPFIASLVLISLSLIPY 185 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCcCCccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 998888888987777777665322 222 346788888999999999999999999999999999999999999999999
Q ss_pred cCCCccccccc----c--ccc----hHHHHHHHHhhhhhHHHhhhhhcc----c------cCCCCchhHHHHHHHHHHHH
Q 012131 189 LKPWRWCMVDL----K--NVN----WGLYLNTLFWNLNYWDSISTLVGE----V------EDPGKTLPRALFYALILVVF 248 (470)
Q Consensus 189 ~~~~~~~~~~~----~--~~~----~~~~~~~~~~~~~G~e~~~~~~~E----~------k~P~k~ip~ai~~~~~~~~~ 248 (470)
.+.++....+. + ..+ ....++.++++|.-...++.++.. . ++.+|+..|++..+..+..+
T Consensus 186 w~~~~L~~~~~~~~~~~~~~~~~~~l~~~iPv~v~SF~f~~iIssl~~y~r~~y~~~~~~~~a~~k~~rii~~gs~i~lv 265 (443)
T PRK13629 186 WNSAVIDQVDLGSLSLTGHDGILVTVWLGISIMVFSFNFSPIVSSFVVSKREEYEKDFGRDFTERKCSQIISRASMLMVA 265 (443)
T ss_pred cCHHHHhcCccccccccccccHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHH
Confidence 99887754331 1 111 223445567777776666655544 3 22358889999999999999
Q ss_pred HHHHHHHHHHhccCCCccc---ccccH-HHHHHHHhcc---------hhHHHHHHHHHHHHhHHHHHHHhhhhhHHHHhh
Q 012131 249 AYFFPLLIGTGAAPVHREL---WSDGY-FSVIAKLIGG---------VWLRTWIQGASAVSNMGMFIAEMSSDSFQLLGM 315 (470)
Q Consensus 249 ~y~l~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~ 315 (470)
+|++..+.+.+..++++.. +.+.+ +..+++...+ +....+..+...++..+|..+...+..-.+-.+
T Consensus 266 ~y~fwv~S~~gsLs~~~l~~a~~qn~s~Ls~La~~~~~~~~~~~~~~~~i~~~~~ifa~~AI~TSFlGv~LGl~E~l~gl 345 (443)
T PRK13629 266 VVMFFAFSCLFTLSPQNMAEAKAQNIPVLSYLANHFASMTGTKSTFAITLEYAASIIALVAIFKSFFGHYLGTLEGLNGL 345 (443)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHhCCcHHHHHHHHhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999988842 22334 7777777765 667778888888888888888887777766666
Q ss_pred hhcCCCchhhhhcCCCCCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCcccCC
Q 012131 316 AERGMLPEIFARRSQYGTPLVGILFSASGVILLSWLSFQEIVAAENFLYCFAMIMEFIAFVKLRMQYPEAIRPYKVPL 393 (470)
Q Consensus 316 a~d~~lP~~~~~~~r~~~P~~ai~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (470)
.++...-..=.+.|++..-....++..+.+-+....+.+-+.-..+++..+.-++.++--...-+|.|. -++||.+.
T Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~np~il~~i~~~~gPiia~il~l~P~y~i~kvp~-l~~yr~~~ 422 (443)
T PRK13629 346 ILKFGYKGDKTKVSLGKLNTISMIFIMGSTWVVAYANPNILDLIEAMGAPIIASLLCLLPMYAIRKAPS-LAKYRGRL 422 (443)
T ss_pred HHHHHhhccccccCHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHhhhHHHHHHHHHHHHHHHHccHH-HHHhCCCc
Confidence 643111000002222222223333333444444445544444333344433333333322333334333 33477655
|
|
| >KOG2083 consensus Na+/K+ symporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.79 E-value=8.4e-18 Score=163.44 Aligned_cols=394 Identities=14% Similarity=0.094 Sum_probs=268.8
Q ss_pred cccccccchhhHHHhHhhh-hcc--cccchhhHHhhhChHHHHHHHHHHHHHHHHHHHHHHHHhhccCc-cCCchhHhHH
Q 012131 19 LERFQKVSVIPLVFLIFYE-VSG--GPFGVEDSVMAAGPLLALIGFLFFPFIWSIPEALITAEMGTMFP-ENGGYVVWVA 94 (470)
Q Consensus 19 ~~~~r~l~~~~~~~~~~~~-v~g--g~~~~~~~~~~~g~~~~~~~~ii~~~~~~~~~al~~~el~~~~p-~~GG~y~~~~ 94 (470)
.+.+-++|+|+.++...-- +-| -..-++...+++|-....+...+..++ ++.++++..-++++-. ++||.|..++
T Consensus 24 ~~~~v~fg~~~gv~~~cmlni~gv~lflrl~wivgqagi~~~~~ii~~~~~v-t~it~lSa~~I~t~~~vk~Gg~yflis 102 (643)
T KOG2083|consen 24 TKGPVLFGWWDGVFVRCMLNIFGVILFLRLGWIVGQAGIGNSVLIIGLTTVV-TLITVLSAIAIVTRGQVKSGGVYFLIS 102 (643)
T ss_pred cCCceEEeeeehhhhhhhHHHHHHHHhhhhhheeecchhhhhHHHHHHHHHH-HHHHHHhHheeeecceeccCcEEEEEE
Confidence 3456689999998865432 333 122245566667765554444444454 8888888888888866 4899999999
Q ss_pred HhhCChHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 012131 95 SALGPHWGFQQGWMKWLSGVIDNALYPVLFLDYLKSAIPALEGGFPRIVAVLLLTTALTYMNYRGLTIVGWVAIVLGVFS 174 (470)
Q Consensus 95 ~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~i~~~~~ 174 (470)
|.+||.+|-..|..|.++.....+.+..+++|-+..++..+.. ....-++.+.++++..+|..|+++..|.|.++..+.
T Consensus 103 ~slg~efggsigiIy~f~~aVa~am~~vgfaEsv~~l~~~~s~-~~i~gi~~vt~~ill~i~~ag~~w~~k~q~~ll~il 181 (643)
T KOG2083|consen 103 RSLGPEFGGSIGIIYAFANAVATAMYVVGFAESVAHLFETESK-EMIDGIGSVTVLILLAINVAGVEWEAKLQIVLLLIL 181 (643)
T ss_pred ecccccccchhHHHHHHHHHHHHHHhhhhHHHHHHHHHHhccH-HHhcchhHHHHHHHHHhhhccchhHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999888766522 122226677788899999999999999999877766
Q ss_pred HHHHHHHHHHHhhccC-C----Cccc------cccc---cccchHHHHHHHHhhhhhHHHhhhhhccccCCCCchhHHHH
Q 012131 175 LVPFALMGLIAIPRLK-P----WRWC------MVDL---KNVNWGLYLNTLFWNLNYWDSISTLVGEVEDPGKTLPRALF 240 (470)
Q Consensus 175 i~~~~~~~i~~~~~~~-~----~~~~------~~~~---~~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~P~k~ip~ai~ 240 (470)
++.+.-+.+..+...+ . ..+. +..+ ....|...++..|-+.+|.-+..+++++.|+|++++|++-+
T Consensus 182 ~iai~~f~~gs~~~~~~~~~g~~~~~a~~~~~n~~~~~~~~~tfF~vf~vfFpaatgilaG~nisGdL~~Pq~~IP~GaL 261 (643)
T KOG2083|consen 182 LIAIADFLVGSFFSPNEFSSGFFGYRADIFVENLNPDIDPGYTFFSVFAVFFPAATGILAGANISGDLKDPQKAIPLGAL 261 (643)
T ss_pred HHHHHHhhhhhccChhhhcccccccchhhcccCCCCCcCCCCceEeeeeeecchhhhhhccccccCCCCCchhhcccchh
Confidence 6655555554432211 0 0110 0111 12244444555567889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCccc------cc--ccHHHHHHHHh-cchhHHHHHHHHHHHHhHHHHHHHhhhhhHH
Q 012131 241 YALILVVFAYFFPLLIGTGAAPVHREL------WS--DGYFSVIAKLI-GGVWLRTWIQGASAVSNMGMFIAEMSSDSFQ 311 (470)
Q Consensus 241 ~~~~~~~~~y~l~~~~~~~~~~~~~~~------~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~ 311 (470)
.+......+|............++..+ .. +..+.+..+.. ...........+...+...+..+.+.++.++
T Consensus 262 ~Ai~vst~~yl~~i~~~Ga~~~r~~~~~~~~~~~~~c~~gl~~~~qv~smvS~~~Pl~~AGi~~a~LSsalsslVsap~V 341 (643)
T KOG2083|consen 262 LAIGVSTLLYLIFIADLGATPVRDALENWNDTSTKSCPIGLTNYLQVMSMVSTFGPLITAGILAAELSSALSSLVSAPKV 341 (643)
T ss_pred hhhhhhhhhhhhhhhhcccHHHHHHhccchhhccCCCccchHHHHHHHHhHhhcccchhhHHHHHHHHHHHHHHHhhhHH
Confidence 999999999987765544322222111 11 11222222221 1122334455666677777788889999999
Q ss_pred HHhhhhcCCCc--hhhhhcC-CCCCChHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCC
Q 012131 312 LLGMAERGMLP--EIFARRS-QYGTPLVGILFSASGVILLSWL-SFQEIVAAENFLYCFAMIMEFIAFVKLRMQYPEAIR 387 (470)
Q Consensus 312 l~~~a~d~~lP--~~~~~~~-r~~~P~~ai~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (470)
+.++.+|+..| .++.|-. |.+.|.++......++...... ..+.+....+.....+|.....+.+.-+-..++..|
T Consensus 342 ~QaL~kd~~yp~i~~f~KgyGkn~~Plrg~~l~~~~av~fi~igeln~iapiis~FfL~syAlinf~~f~aSl~~s~~wR 421 (643)
T KOG2083|consen 342 LQALCKDSLYPSILFFAKGYGKNKEPLRGYLLTFLTAVSFIAIGELNIIAPIISNFFLLSYALINFSCFHASLAISEGWR 421 (643)
T ss_pred HHHHHhcCCCccHHHHHccCCccccchHHHHHHHHhHheeEEecccceeccchhhhhhhhhhccchhhhhhhhccccccC
Confidence 99999999999 6788766 8999999999988888654433 567777778888888898887777765555555444
Q ss_pred CcccCCchhhHHHhhhhhHHHHHHHHHhccc
Q 012131 388 PYKVPLGTVGAILLCIPPTLLILVVLALASP 418 (470)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (470)
|.-. ....++..++.+..+...+...+
T Consensus 422 p~f~----~yn~wVSllGalKOG~ImFli~w 448 (643)
T KOG2083|consen 422 PSFK----FYNAWVSLLGALLCLAIMFLISW 448 (643)
T ss_pred chhh----hHHHHHHHHHHHHHHHHHHHHHH
Confidence 3211 22234455555555544444444
|
|
| >PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell | Back alignment and domain information |
|---|
Probab=99.56 E-value=4.1e-12 Score=122.57 Aligned_cols=281 Identities=19% Similarity=0.161 Sum_probs=218.3
Q ss_pred ccchhhHHHhHhhhhcc-cccchhhHHhhhChHHHHHHHHHHHHHHHHHHHHHHHHhhccCccCCchhHhHHHhhCChHH
Q 012131 24 KVSVIPLVFLIFYEVSG-GPFGVEDSVMAAGPLLALIGFLFFPFIWSIPEALITAEMGTMFPENGGYVVWVASALGPHWG 102 (470)
Q Consensus 24 ~l~~~~~~~~~~~~v~g-g~~~~~~~~~~~g~~~~~~~~ii~~~~~~~~~al~~~el~~~~p~~GG~y~~~~~~~g~~~g 102 (470)
|+|..|...+.+..+.| ++...|....+.+. ...++.++++++ .+..++.+..+.+++|+. ..+.+.++.+||.+|
T Consensus 1 kIS~~Q~~~l~~~~~~g~~~l~~p~~l~~~~~-d~Wi~~ll~~~~-~l~~~~l~~~l~~~~p~~-~l~~~~~~~~Gk~lg 77 (320)
T PF03845_consen 1 KISPRQLFFLLISSIIGTGILFLPAILAEQAG-DAWISVLLGGLI-GLLLALLIYYLLKRFPGK-TLVEISEKLFGKWLG 77 (320)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CcHHHHHHHHHH-HHHHHHHHHHHHHHCCCC-CHHHHHHHHhCcHHH
Confidence 57888999999988877 67777777665333 445666777765 777788899999999986 789999999999999
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHh-ccccCCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 012131 103 FQQGWMKWLSGVIDNALYPVLFLDYLKSA-IPALEGGFPRIVAVLLLTTALTYMNYRGLTIVGWVAIVLGVFSLVPFALM 181 (470)
Q Consensus 103 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~i~~~~~i~~~~~~ 181 (470)
...+..+.+.+....+.....+++.++.. +|. .|.+.....+++........|.+..+|...+.....++.++.+
T Consensus 78 ~ii~~~~~l~~l~~~~~~lr~~~~~i~~~~lp~----TP~~~i~~~~ll~~~y~a~~G~e~i~R~~~~~~~~~~i~~~~i 153 (320)
T PF03845_consen 78 KIINLLYILYFLLISALVLREFSEFIKTYLLPE----TPIWVIILLFLLVAAYAARKGIEVIARVAEILFPIFLILLLLI 153 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc----CCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999988876 444 5778888888899999999999999998888777777777777
Q ss_pred HHHHhhccCCCccccccccccchHHHHH---HHHhhhhhHHHhhhhhccccCCCCchhHHHHHHHHHHHHHHHHHHHHHH
Q 012131 182 GLIAIPRLKPWRWCMVDLKNVNWGLYLN---TLFWNLNYWDSISTLVGEVEDPGKTLPRALFYALILVVFAYFFPLLIGT 258 (470)
Q Consensus 182 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~G~e~~~~~~~E~k~P~k~ip~ai~~~~~~~~~~y~l~~~~~~ 258 (470)
......+.+.++..+.. +.|+...+. ...+.|.|.|....+...+|||+ +..|....+..+++++|.+......
T Consensus 154 ~~~~~~~~~~~~l~P~~--~~g~~~i~~~~~~~~~~~~~~~~~l~~~p~~~~~~-~~~k~~~~~~~~~~~~~~~~~~~~i 230 (320)
T PF03845_consen 154 LLLSIPNIDWDNLLPVL--ESGIKPILKGSLVISFPFGGIEILLFLFPFVKDKK-KLKKSLLIAILISGLFLLFIIFITI 230 (320)
T ss_pred HHHhcccCCHHHeeCcc--cCChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCch-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777765543 234443333 33578899999999999999974 5689999999999999999999999
Q ss_pred hccCCCcccccccHHHHHHHHhcch-hH---HHHHHHHHHHHhHHHHHHHhhhhhHHHHh
Q 012131 259 GAAPVHRELWSDGYFSVIAKLIGGV-WL---RTWIQGASAVSNMGMFIAEMSSDSFQLLG 314 (470)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~sR~l~~ 314 (470)
+..+.++.+....|...+.+...-+ .. ..++...-..+.+......+..+++.+-.
T Consensus 231 ~vfG~~~~~~~~~P~~~~~~~i~i~~fieRld~~~i~~w~~~~~~~~~~~~~~~~~~~~~ 290 (320)
T PF03845_consen 231 GVFGPELAKKLTYPVLELARSIEIGDFIERLDSIFILIWIIGIFIKISLYLYAASEGLSQ 290 (320)
T ss_pred HhcCHHHHhceecHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999888887888888888776433 33 33444444555555555556666655433
|
A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane |
| >KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.2e-09 Score=107.73 Aligned_cols=268 Identities=18% Similarity=0.174 Sum_probs=168.0
Q ss_pred cccccchhhHHHhHhhhhcc-cccchhhHHhhhChHHHHHHHHHHHHHHHHHHHHHHHHhhccCccCCc-----hhHhHH
Q 012131 21 RFQKVSVIPLVFLIFYEVSG-GPFGVEDSVMAAGPLLALIGFLFFPFIWSIPEALITAEMGTMFPENGG-----YVVWVA 94 (470)
Q Consensus 21 ~~r~l~~~~~~~~~~~~v~g-g~~~~~~~~~~~g~~~~~~~~ii~~~~~~~~~al~~~el~~~~p~~GG-----~y~~~~ 94 (470)
.+|.-++++..+..++.++| |+.++|+++.+.|..+-+...++.+++ +.-+++...++-...+.-.| .-.-++
T Consensus 34 ~~~~~s~~~a~~~~i~~~~G~gvLsLP~A~~~lGW~~G~~~Ll~~~ii-t~YT~~LL~~~~~~~~~~~~~r~~~Y~dl~~ 112 (437)
T KOG1303|consen 34 PSRGGSWWQAAFHIINALIGAGVLSLPYALAQLGWISGIVILLLFAII-TLYTATLLSRCWEMHEAVPGKRRYRYPDLGQ 112 (437)
T ss_pred cCCCCcceehhhheehhhhhhhhhhhHHHHHhCchHHHHHHHHHHHHH-HHHHHHHHHHHHHhccCCCCccCCChHHHHH
Confidence 47889999999999999888 899999999998876545555555554 55556556677777776666 556778
Q ss_pred HhhCChHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccccCCc-----hHHH--HHHHHHHHHHHHHHhhhhHHHHHHH
Q 012131 95 SALGPHWGFQQGWMKWLSGVIDNALYPVLFLDYLKSAIPALEGG-----FPRI--VAVLLLTTALTYMNYRGLTIVGWVA 167 (470)
Q Consensus 95 ~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~--~~~~~~~~~~~~~n~~g~~~~~~~~ 167 (470)
+++|++.-.++++...+........+....++-+..+++....+ ...+ +.+.+.+.... +.......+..
T Consensus 113 ~afG~~~~~iv~~~~~~~~fg~~v~y~il~~~~L~~~~~~~~~~~~~l~~~~f~iif~~i~~~~s~---lp~~~~l~~~S 189 (437)
T KOG1303|consen 113 AAFGPKGRLLVSVLQYLELFGICVVYIILAGDNLKALFPIVSLNDNSLDKQYFIIIFGLIVLPLSQ---LPNFHSLSYLS 189 (437)
T ss_pred HHhCCCceEeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccceehhhhHHHHHHHHHH---CCCcchhHHHH
Confidence 89998887788888888888888888888888888887643211 1122 22222222222 22333333344
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCC---Cccccccccccch-HHHHHHHHhhhhhHHHhhhhhccccCCCCchhHHHHHHH
Q 012131 168 IVLGVFSLVPFALMGLIAIPRLKP---WRWCMVDLKNVNW-GLYLNTLFWNLNYWDSISTLVGEVEDPGKTLPRALFYAL 243 (470)
Q Consensus 168 ~i~~~~~i~~~~~~~i~~~~~~~~---~~~~~~~~~~~~~-~~~~~~~~~~~~G~e~~~~~~~E~k~P~k~ip~ai~~~~ 243 (470)
.+..+..+....+....+..+.-. ..-.....++.+. ...+....|+|.|....+.+-..+|+|+| ++|+.+.+.
T Consensus 190 ~~~avmS~~~a~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~f~a~g~iaFaf~gH~v~peIq~tMk~p~~-f~~~~lis~ 268 (437)
T KOG1303|consen 190 LVGAVMSTLYAVILIVLGIADGVGFCAPSGGYLDLGTIPTVFTALGIIAFAYGGHAVLPEIQHTMKSPPK-FKKALLISY 268 (437)
T ss_pred HHHHHHHHHHHHHHHHHhhccccccCCcccCcccCCCCcchhhhhhheeeeecCCeeeeehHhhcCCchh-hhhHHHHHH
Confidence 333333333222222222222211 1111111111111 23344457999999999999999999988 999999999
Q ss_pred HHHHHHHHHHHHHHHhccCCCcccccccHHHHHHHHh-cchhHHHHHHHHHHHHhHHH
Q 012131 244 ILVVFAYFFPLLIGTGAAPVHRELWSDGYFSVIAKLI-GGVWLRTWIQGASAVSNMGM 300 (470)
Q Consensus 244 ~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 300 (470)
.++..+|+.....-....+.+..+ ++...+ .+.+......+.+.+-.+++
T Consensus 269 ~~~~~~y~~vai~GY~aFG~~~~~-------~il~s~~~p~~~~~~ani~i~~h~i~s 319 (437)
T KOG1303|consen 269 IIVTFLYFPVAIIGYWAFGDSVPD-------NILLSLQPPTWLIALANILIVLHLIGS 319 (437)
T ss_pred HHHHHHHHHHHHhhhhhhccccch-------hhhhcccCchhHHHHHHHHHHHHHhhh
Confidence 999999999998777666555332 222233 24455555555555544444
|
|
| >KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.30 E-value=6.9e-09 Score=100.77 Aligned_cols=241 Identities=17% Similarity=0.233 Sum_probs=161.2
Q ss_pred ccccchhhHHHhHhhhhcc-cccchhhHHhhhChHHHHHHHHHHHHH--HHHH-HHHHHHHhhccCccC-----------
Q 012131 22 FQKVSVIPLVFLIFYEVSG-GPFGVEDSVMAAGPLLALIGFLFFPFI--WSIP-EALITAEMGTMFPEN----------- 86 (470)
Q Consensus 22 ~r~l~~~~~~~~~~~~v~g-g~~~~~~~~~~~g~~~~~~~~ii~~~~--~~~~-~al~~~el~~~~p~~----------- 86 (470)
++..+..+.+.--.-.++| |+++.|.+...+|-..-.+.-++.+++ ++.. ..-|--++.++...+
T Consensus 44 ~~~~s~~~tl~hl~k~~iGtG~l~lP~AFk~sG~~~G~~~~~~i~~l~~yc~~~LVk~~~~L~~~~~~~~~~y~~~~~~a 123 (449)
T KOG1304|consen 44 EHPTSATQTLIHLLKGSIGTGILSLPLAFKNSGLVMGLLLTVFIGFLCTYCMHLLVKCSHKLCKRFRGPSLDYAETAESA 123 (449)
T ss_pred CCCCchHHHHHHHHHhhhccccccChHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCccccHHHHHHHH
Confidence 3456677777655555667 999999999998866444444444432 2221 133445666664211
Q ss_pred -CchhHhHHHhhCChHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccc-cCCchHHHHHHHHHHHHHHHHHh-hhhHHH
Q 012131 87 -GGYVVWVASALGPHWGFQQGWMKWLSGVIDNALYPVLFLDYLKSAIPA-LEGGFPRIVAVLLLTTALTYMNY-RGLTIV 163 (470)
Q Consensus 87 -GG~y~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~n~-~g~~~~ 163 (470)
.+.|.| .|.+||...+++.....+.....+..+....++-++.+.+. ....+.......+.+.....+|. +..|..
T Consensus 124 ~~~~~~~-~r~~g~~~r~~V~~~L~i~QlGfc~vY~VFva~nl~~i~~~~~~~~~s~~~~i~~~~~~~lll~~Ir~Lk~L 202 (449)
T KOG1304|consen 124 MEGGPGW-LRKYGPAARFVVNFFLVITQLGFCCVYLVFVATNLKQIVDEHSPGVLSVRLYILIQLPPLLLLNLIRNLKIL 202 (449)
T ss_pred HcCCcHH-HHhhcHHHHHHHHHHHHHHHhchhhEEeeeHHhhHHHHHhccCCCCccHHHHHHHHHHHHHHHHHHHhhHHh
Confidence 222334 67789999999999999999999999999999999888873 33344555555555555555554 345555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCCccccccccccchHHHHHHHHhhhhhHHHhhhhhccccCCCCchh---HHHH
Q 012131 164 GWVAIVLGVFSLVPFALMGLIAIPRLKPWRWCMVDLKNVNWGLYLNTLFWNLNYWDSISTLVGEVEDPGKTLP---RALF 240 (470)
Q Consensus 164 ~~~~~i~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~P~k~ip---~ai~ 240 (470)
.-+..+..++.++.++++....+.+..+..-.+.-....+|..+++..+|+|.|...+-.+=+++|+| |++| +.+-
T Consensus 203 sp~Sl~Anv~~~~g~~ii~~y~~~~~~~~~~~~~~~~~~~~~lf~GtaifafEGig~VLPlEn~Mk~P-~~F~g~~gVLn 281 (449)
T KOG1304|consen 203 SPFSLFANVFILVGLAIIMYYLVQDLPPTSDLPAVTGWSGLPLFFGTAIFAFEGIGMVLPLENSMKKP-QKFPGPFGVLN 281 (449)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhccCCccccccccchhhhHHHHHHHHHHhccceEEEehhhcccCh-hhcCCccchHH
Confidence 55555555666666666555554443311111111224577788888899999999999999999999 5567 9999
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCC
Q 012131 241 YALILVVFAYFFPLLIGTGAAPVH 264 (470)
Q Consensus 241 ~~~~~~~~~y~l~~~~~~~~~~~~ 264 (470)
.++.++.++|+...+.-....+.+
T Consensus 282 ~~M~~V~~ly~~~Gf~GYl~fG~~ 305 (449)
T KOG1304|consen 282 LGMGIVTLLYIFLGFFGYLAFGDD 305 (449)
T ss_pred HHHHHHHHHHHHHHHHHHhhcccc
Confidence 999999999998887666555544
|
|
| >PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.5e-08 Score=97.10 Aligned_cols=288 Identities=14% Similarity=0.134 Sum_probs=162.1
Q ss_pred ccccccchhhHHHhHhhhhcc--cccchhhHHhhhChHHHHHHHHHHHHHHHHHHHHHHHHhhccCcc-------CCchh
Q 012131 20 ERFQKVSVIPLVFLIFYEVSG--GPFGVEDSVMAAGPLLALIGFLFFPFIWSIPEALITAEMGTMFPE-------NGGYV 90 (470)
Q Consensus 20 ~~~r~l~~~~~~~~~~~~v~g--g~~~~~~~~~~~g~~~~~~~~ii~~~~~~~~~al~~~el~~~~p~-------~GG~y 90 (470)
+++++++.+++++.+++..+| .+.+....+..+||....|.|+.+.+ .+++.++=.-|+.++.+ .||..
T Consensus 14 ~~~g~iS~fqA~~~ala~~vG~GNI~GVa~AI~~GGPGAiFWMWi~a~~--Gmatk~~E~~La~~yR~~~~~G~~~GGP~ 91 (416)
T PF01235_consen 14 EEEGGISPFQALCTALAGTVGTGNIAGVATAIAIGGPGAIFWMWISALL--GMATKYAEVTLAQKYREKDEDGEYRGGPM 91 (416)
T ss_pred CCCCCcChHHHHHHHHHhccCcchHHHHHHHHHhhchhHHHHHHHHHHH--HHHHHHHHHHHHHHheEECCCCCEeecHH
Confidence 466789999999999998766 57777888888999888888777655 44445544445544442 48999
Q ss_pred HhHHHhhCChH-HHHHHHHHHHHHhhh-HHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 012131 91 VWVASALGPHW-GFQQGWMKWLSGVID-NALYPVLFLDYLKSAIPALEGGFPRIVAVLLLTTALTYMNYRGLTIVGWVAI 168 (470)
Q Consensus 91 ~~~~~~~g~~~-g~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~ 168 (470)
.|.++.+|.++ +.+...+....+... ...-+...++.++..++ .+.+..++++.++..++..-|+|..+++..
T Consensus 92 yyi~~gl~~k~la~~fai~~~~~~~~~~~~~Q~nsi~~~~~~~f~-----i~~~~~gi~l~~l~~~vi~GGikrI~~v~~ 166 (416)
T PF01235_consen 92 YYIEKGLGSKWLAILFAIFLIIAFGIGFNMVQANSIADALSSAFG-----IPPWITGIILAILVALVIFGGIKRIAKVSE 166 (416)
T ss_pred HHHHHHhccchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhcc-----ccHHHHHHHHHHHHHHHHHcchhHHHHHHH
Confidence 99999999654 444444422222221 12222223333333332 466777888888888888889998888776
Q ss_pred HHHHHHHHHHHHHHHHHhhcc-C--CC--------ccccccccccchHH-HH-HHH-------Hhhh---hhHHHhhhhh
Q 012131 169 VLGVFSLVPFALMGLIAIPRL-K--PW--------RWCMVDLKNVNWGL-YL-NTL-------FWNL---NYWDSISTLV 225 (470)
Q Consensus 169 i~~~~~i~~~~~~~i~~~~~~-~--~~--------~~~~~~~~~~~~~~-~~-~~~-------~~~~---~G~e~~~~~~ 225 (470)
.+.-+..+.-++..+..+..+ + |+ .+.+... ..|..+ .+ .++ +|+= .|.....|-+
T Consensus 167 ~lVP~Ma~~Yi~~~l~ii~~n~~~ip~~~~~If~~AF~~~aa-~GG~~G~~i~~ai~~Gv~Rg~fSNEAG~Gsa~~a~a~ 245 (416)
T PF01235_consen 167 KLVPFMAILYILGGLIIIIINIDQIPAAFSLIFSSAFTPKAA-FGGFAGSTIMMAIRQGVARGLFSNEAGLGSAPIAHAA 245 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHcCCccc-hhhHHHHHHHHHHHHhhhhhhccCCCCCChhHHHHHH
Confidence 655554444433333322111 1 11 1111110 111111 11 011 1111 2566777788
Q ss_pred ccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHhccCCCc-ccccccHH-HHHHHHhcchhHHHHHHHHHHHHhHHHHHH
Q 012131 226 GEVEDPGKTLPRALFYALILVVFAYFFPLLIGTGAAPVHR-ELWSDGYF-SVIAKLIGGVWLRTWIQGASAVSNMGMFIA 303 (470)
Q Consensus 226 ~E~k~P~k~ip~ai~~~~~~~~~~y~l~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (470)
.|+++|.|.=-.+++--.+=+.++=.+..+.++..-.+.. .+..+..+ ...+++..++++..++.+..++-.+++..+
T Consensus 246 a~~~hP~~QGl~~~~~vFiDTiiVCt~TalvIl~tG~~~~~~~~~g~~l~~~Af~~~~g~~g~~~v~i~l~lFafTTilg 325 (416)
T PF01235_consen 246 AETDHPVRQGLVQMFEVFIDTIIVCTITALVILVTGVWSWGSGLEGAALTQAAFSTVLGSWGPYFVAIALFLFAFTTILG 325 (416)
T ss_pred hcCCCcHHHeeeeeehHhHHHHHHHHHHHHHhhccCCCCCCCcchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 8999997764433333222232223333333332211111 11122233 334455566788888888888888999998
Q ss_pred HhhhhhHHHHhh
Q 012131 304 EMSSDSFQLLGM 315 (470)
Q Consensus 304 ~~~~~sR~l~~~ 315 (470)
+.+..-|.+.-+
T Consensus 326 ~~~yge~~~~yl 337 (416)
T PF01235_consen 326 WYYYGEKCAEYL 337 (416)
T ss_pred HHHHHHHHHHHH
Confidence 887666655443
|
One such group is the sodium/alanine symporter family, the members of which transport alanine in association with sodium ions. These transporters are believed to possess 8 transmembrane (TM) helices [, ], forming a channel or pore through the cytoplasmic membrane, the interior face being hydrophilic to allow the passage of alanine molecules and sodium ions []. This family is restricted to the bacteria and archaea, examples are the alanine carrier protein from the Bacillus PS3 (Thermophilic bacterium PS-3); the D-alanine/glycine permease from Pseudoalteromonas haloplanktis (Alteromonas haloplanktis); and the hypothetical protein yaaJ from Escherichia coli.; GO: 0005283 sodium:amino acid symporter activity, 0006814 sodium ion transport, 0016020 membrane |
| >COG3949 Uncharacterized membrane protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.16 E-value=3.1e-07 Score=84.76 Aligned_cols=266 Identities=13% Similarity=0.093 Sum_probs=166.0
Q ss_pred HHhHhhhhcccccchhhHHhh-hCh--HHHHHHHHHHHHHHHHHHHHHHHHhhccCccCCchhHhHHHhhCChHHHHHHH
Q 012131 31 VFLIFYEVSGGPFGVEDSVMA-AGP--LLALIGFLFFPFIWSIPEALITAEMGTMFPENGGYVVWVASALGPHWGFQQGW 107 (470)
Q Consensus 31 ~~~~~~~v~gg~~~~~~~~~~-~g~--~~~~~~~ii~~~~~~~~~al~~~el~~~~p~~GG~y~~~~~~~g~~~g~~~g~ 107 (470)
.+..++.++|+-++++.-+.+ .|+ ....++.++.++++.+ .+....|+++++ ++...-.+.++.+||.++.+.-.
T Consensus 9 ~f~~ig~~vGAGfAsGqEi~QFF~~~G~~s~~gIivs~vlf~~-~g~vim~ig~~f-~a~~y~~~~~~v~~~~~~ki~d~ 86 (349)
T COG3949 9 AFAFIGTVVGAGFASGQEIMQFFGKYGVYSILGIILSTVLFTL-SGAVIMTIGKKF-NATSYREILKYVSGPKFAKIIDI 86 (349)
T ss_pred HHHHHHHhhcccccchHHHHHHHHHhhhhhhHHHHHHHHHHHH-HHHHHHHHHHHh-cccchHHHHHHHhhHHHHHHHHH
Confidence 344566777877777766555 333 2467888888887555 477788999998 45566779999999999999887
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012131 108 MKWLSGVIDNALYPVLFLDYLKSAIPALEGGFPRIVAVLLLTTALTYMNYRG-LTIVGWVAIVLGVFSLVPFALMGLIAI 186 (470)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~g-~~~~~~~~~i~~~~~i~~~~~~~i~~~ 186 (470)
...+.....+.....+.+..+...++ .|.|+-++.++.+...+-.++ ++..-+++.+..-+-++.+..+.....
T Consensus 87 ~iif~lf~~~vVM~AGags~~~e~~~-----lP~wiGali~i~~v~i~lfl~~vegi~tvn~iI~P~LIi~l~~v~~~~~ 161 (349)
T COG3949 87 IIIFFLFSTAVVMLAGAGSLLEEMFG-----LPYWIGALIIILLVLILLFLGRVEGIITVNGIITPFLIIILVLVTLSFQ 161 (349)
T ss_pred HHHHHHHHHHHHHhccchhHHHHHhC-----ccHHHHHHHHHHHHHHHHHHhcccceeeeheeHHHHHHHHHHHHHHHHH
Confidence 77766555555555555556666664 366666666666666666665 665555555444333333222222222
Q ss_pred hccCCCccccccccccchHHHHH--HHHhhhhhHHHhhhhhccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHhccCCC
Q 012131 187 PRLKPWRWCMVDLKNVNWGLYLN--TLFWNLNYWDSISTLVGEVEDPGKTLPRALFYALILVVFAYFFPLLIGTGAAPVH 264 (470)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~G~e~~~~~~~E~k~P~k~ip~ai~~~~~~~~~~y~l~~~~~~~~~~~~ 264 (470)
...+.+.++.......+|..... ..+=..........+++|+|++ |+..++-+.+-.+.+++..+.........|
T Consensus 162 f~~~~~~a~~~~~~~~~W~~~~~~Y~alNi~~~~avLv~lg~~~~~~-~~~~~g~l~gglIlgvl~~l~nlsLi~~~~-- 238 (349)
T COG3949 162 FTNLGNAAQIVLTKQGNWKASAVGYGALNILVAVAVLVPLGGRMESR-KVSGIGGLIGGLILGVLLFLINLSLIALYD-- 238 (349)
T ss_pred HhhccchhhhcCCcCCChHHHHHhhhhHHHHhHhHhhhhhccccccc-chhhhhhhhhhHHHHHHHHHHHHHHHhhcc--
Confidence 22222222222222334433221 1122233455667788999984 777888888888888888887777666544
Q ss_pred cccccccHHHHHHHHhcchhHHHHHHHHHHHHhHHHHHHHhhh
Q 012131 265 RELWSDGYFSVIAKLIGGVWLRTWIQGASAVSNMGMFIAEMSS 307 (470)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (470)
+....+-|..++++.+. +....++.+.......++..+.+++
T Consensus 239 ~v~~~dIP~l~i~~~~~-~~i~lvm~vIi~~~IytT~vg~iy~ 280 (349)
T COG3949 239 KVVNYDIPLLTIAKNFS-PLIGLVMSVIIWLEIYTTTVGLIYG 280 (349)
T ss_pred hhhccCCcHHHHHHhcc-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566779989888876 5556666666666666666665544
|
|
| >TIGR00835 agcS amino acid carrier protein | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.7e-07 Score=91.87 Aligned_cols=285 Identities=13% Similarity=0.123 Sum_probs=159.7
Q ss_pred ccccchhhHHHhHhhhhcc-c-ccchhhHHhhhChHHHHHHHHHHHHHHHHHHHHHHHHhhccCc---c----CCchhHh
Q 012131 22 FQKVSVIPLVFLIFYEVSG-G-PFGVEDSVMAAGPLLALIGFLFFPFIWSIPEALITAEMGTMFP---E----NGGYVVW 92 (470)
Q Consensus 22 ~r~l~~~~~~~~~~~~v~g-g-~~~~~~~~~~~g~~~~~~~~ii~~~~~~~~~al~~~el~~~~p---~----~GG~y~~ 92 (470)
+++++.+++++.+.+..+| | +.+.+..+..+||.+..|.|+.+.+ ...+.+.-.-|+.++. + .||.-.|
T Consensus 44 ~g~iS~fqA~~~ala~~VG~GnI~Gva~Ai~~GGpGAvFWMWI~all--Gm~~~~~e~~L~~~yr~~~~~g~~~GGP~yy 121 (425)
T TIGR00835 44 KGGVSSFQALFTSLAARVGIGNIVGVATAIAIGGPGAVFWMWVTAFI--GMATKFVESTLAQKYRERDADGVFRGGPMYY 121 (425)
T ss_pred CCCccHHHHHHHHHHHHHhhhHHHHHHHHHHhcCCCchHHHHHHHHH--HHHHHHHHHHHHHHeeeeCCCCCEecChHHH
Confidence 4569999999999999877 4 8888888888999887777777655 3333443344444444 2 1344488
Q ss_pred HHHhhC-ChHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 012131 93 VASALG-PHWGFQQGWMKWLSG-VIDNALYPVLFLDYLKSAIPALEGGFPRIVAVLLLTTALTYMNYRGLTIVGWVAIVL 170 (470)
Q Consensus 93 ~~~~~g-~~~g~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~i~ 170 (470)
.++.++ |.+|.+.... .+.+ ...........++.++..++ .+.+...+++.++...+..-|+|...++....
T Consensus 122 i~~gl~~k~lg~lfa~~-~i~~f~~~~~~Q~nsi~~~~~~~~~-----~~~~v~~i~l~~l~~~vi~GGik~Ia~v~~~l 195 (425)
T TIGR00835 122 IKKGLGMRWLAVLFAVF-LIASFGIGNMVQANAIASALSNAFN-----VPKLVTGIVLTVLTALIIFGGLKRIAKISSVV 195 (425)
T ss_pred HHHHhCccHHHHHHHHH-HHHHHhhhHHHHHHHHHHHHHHHcC-----CcHHHHHHHHHHHHHHHHhcCchHHHHHHHHH
Confidence 888876 6667776666 3333 33344445555566654442 35677777777777777777999999988877
Q ss_pred HHHHHHHHHHHHHHHhhccCCCcccc---------cccc--ccchHHHH--HHH-------Hhhh---hhHHHhhhhhcc
Q 012131 171 GVFSLVPFALMGLIAIPRLKPWRWCM---------VDLK--NVNWGLYL--NTL-------FWNL---NYWDSISTLVGE 227 (470)
Q Consensus 171 ~~~~i~~~~~~~i~~~~~~~~~~~~~---------~~~~--~~~~~~~~--~~~-------~~~~---~G~e~~~~~~~E 227 (470)
.-+..+..++..+.... .+.++..+ +++. ..|..+.. .++ +|+= .|....+|-+.|
T Consensus 196 vP~m~~~Y~~~~l~ii~-~n~~~lp~~~~~If~~AF~~~a~~GG~~G~~v~~ai~~Gv~Rg~fSNEAG~Gsa~~a~a~a~ 274 (425)
T TIGR00835 196 VPFMALLYVIMALYIII-MNIEQLPAVISLIFRSAFGGDAAAGGFAGSTVAQAIMIGVKRGLFSNEAGMGSAPIAAAAAQ 274 (425)
T ss_pred HHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHhCCchhhHhHHHHHHHHHHHHHhhHHHHhccccccCcHHHHHHHhc
Confidence 66655554433332221 12111110 0100 11121110 111 1211 255666777888
Q ss_pred ccCCCCchhHHHHHHHHHHHHHHHHHHHHHHhccCCC-cccccccHHHH-HHHHhcchhHHHHHHHHHHHHhHHHHHHHh
Q 012131 228 VEDPGKTLPRALFYALILVVFAYFFPLLIGTGAAPVH-RELWSDGYFSV-IAKLIGGVWLRTWIQGASAVSNMGMFIAEM 305 (470)
Q Consensus 228 ~k~P~k~ip~ai~~~~~~~~~~y~l~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (470)
+++|.|.=-.+++--.+=+.++=.+..+.+..--.++ ..+..+..+.+ .+++..++++..++.+..++-.+++..++.
T Consensus 275 ~~hP~~QGl~~~~~vfiDTivvCt~Talvil~tg~~~~~~~~~g~~lt~~af~~~~g~~g~~~v~i~~~lFaftTii~~~ 354 (425)
T TIGR00835 275 VSHPVRQGLVQMLGVFIDTMIVCTATALVILLSGVWNNGEGLSGAQLTQQALSYGLGSFGAVFVAVALFLFAFSTIIGWY 354 (425)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccCCCCCCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 8999775433332222212222222222222211122 11112223333 344445667788888888888889998887
Q ss_pred hhhhHHHHhh
Q 012131 306 SSDSFQLLGM 315 (470)
Q Consensus 306 ~~~sR~l~~~ 315 (470)
+..-+.+.-+
T Consensus 355 yyge~~~~yl 364 (425)
T TIGR00835 355 YYGEKNAEFL 364 (425)
T ss_pred HHHHHHHHHh
Confidence 7665554433
|
Members of the AGCS family transport alanine and/or glycine in symport with Na+ and or H+. |
| >PLN03074 auxin influx permease; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=7.3e-08 Score=97.21 Aligned_cols=232 Identities=10% Similarity=-0.035 Sum_probs=122.6
Q ss_pred cchhhHHHhHhhhhcc-cccchhhHHhhhChHHHHHHHHHHHHHHHHHHHH----HHHHhhccCccCCchh--------H
Q 012131 25 VSVIPLVFLIFYEVSG-GPFGVEDSVMAAGPLLALIGFLFFPFIWSIPEAL----ITAEMGTMFPENGGYV--------V 91 (470)
Q Consensus 25 l~~~~~~~~~~~~v~g-g~~~~~~~~~~~g~~~~~~~~ii~~~~~~~~~al----~~~el~~~~p~~GG~y--------~ 91 (470)
-+..+..+-.....+| |+.++|.++..+|-...++..++.+++ +.-++. ++-|..++.|+.+-.| .
T Consensus 46 ~s~~~~~~~l~~~~vG~GILaLP~Af~~~G~v~Gii~lv~~~~l-~~Yt~~lL~~~~~~~~~r~~~~~~~~~~~~~~~~e 124 (473)
T PLN03074 46 GSVYDAWFSCASNQVAQVLLTLPYSFSQLGMLSGILFQIFYGLL-GSWTAYLISVLYVEYRARKEREKVDFKNHVIQWFE 124 (473)
T ss_pred chHHHHHHHHHHHHHhHHHHhHHHHHHHccHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhccCcCCCchhHHHHHHHH
Confidence 3344444445555567 999999999999877555655555543 322333 3456667777643222 2
Q ss_pred hHHHhhCChHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 012131 92 WVASALGPHWGFQQGWMKWLSGVIDNALYPVLFLDYLKSAIPALEGGFPRIVAVLLLTTALTYMNYRGLTIVGWVAIVLG 171 (470)
Q Consensus 92 ~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~i~~ 171 (470)
-+.+.+||.++.......++.....+..+....++-+..+.+..+...-..+...+.+.+.. .+..|...++..+..
T Consensus 125 ~~~~~~G~~~~~~~~~~~~v~l~~~~v~~li~~~~~~~~l~~~~~~~~~~~i~~~v~~~~~~---i~sl~~l~~~S~ig~ 201 (473)
T PLN03074 125 VLDGLLGPYWKNVGLAFNCTFLLFGSVIQLIACASNIYYINDNLDKRTWTYIFGACCATTVF---IPSFHNYRIWSFLGL 201 (473)
T ss_pred HHHHhcChhHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhCCCcCCCeEEeehHHHHHHHHH---ccCHHHHHHHHHHHH
Confidence 23446899988877655555444444444444444333332222221111122222222222 233444444443332
Q ss_pred HHHHHHHHHHHHHHhhccCCCccccccccccchHHHHHH---HHhhhhhHHHhhhhhccccCCCCchhHHHHHHHHHHHH
Q 012131 172 VFSLVPFALMGLIAIPRLKPWRWCMVDLKNVNWGLYLNT---LFWNLNYWDSISTLVGEVEDPGKTLPRALFYALILVVF 248 (470)
Q Consensus 172 ~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~G~e~~~~~~~E~k~P~k~ip~ai~~~~~~~~~ 248 (470)
...+...+.+.+....+.+.+.+... .+.++..++.+ ++|+|.|.-....+-.|+|||+ +.++....+...+..
T Consensus 202 ~~tl~~av~i~i~~i~~~~~~~~~~~--~~~~~~~~f~~~~~i~faf~g~~v~~~I~~~M~~P~-~F~~~~~l~~~~v~~ 278 (473)
T PLN03074 202 LMTTYTAWYMTIAALSHGQVEGVKHS--GPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQ-KFKYIYLAATLYVLT 278 (473)
T ss_pred HHHHHHHHHHHHHHHhhcCCCCCCCC--CchhHHHHHHHHHHHHHHhcccccHHHHHHhccChh-cccchHHHHHHHHHH
Confidence 22222211222222222222222111 12234333332 5799999999999999999995 588888888888888
Q ss_pred HHHHHHHHHHhccCC
Q 012131 249 AYFFPLLIGTGAAPV 263 (470)
Q Consensus 249 ~y~l~~~~~~~~~~~ 263 (470)
.|+...+......+.
T Consensus 279 ~y~~~~~~gY~~fG~ 293 (473)
T PLN03074 279 LTLPSAAAVYWAFGD 293 (473)
T ss_pred HHHHHHHeeeeeech
Confidence 888776554444443
|
|
| >PRK11375 allantoin permease; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.4e-06 Score=88.38 Aligned_cols=318 Identities=11% Similarity=0.076 Sum_probs=150.3
Q ss_pred CCCCcccccccccchhhHHHhHhhhhcc-ccc-chhhHHhh-hChHHHHHHHHHHHHHHHHHHHHHHHHhhccCccCC-c
Q 012131 13 EDSSPKLERFQKVSVIPLVFLIFYEVSG-GPF-GVEDSVMA-AGPLLALIGFLFFPFIWSIPEALITAEMGTMFPENG-G 88 (470)
Q Consensus 13 ~~~~~~~~~~r~l~~~~~~~~~~~~v~g-g~~-~~~~~~~~-~g~~~~~~~~ii~~~~~~~~~al~~~el~~~~p~~G-G 88 (470)
++-++.++++|+-++++...+=++.... +.+ .....+.. .+....+++.+++.++.+++. +-.+..-++.| +
T Consensus 15 ~dl~pvp~~~Rt~~~~~~~~~W~g~~~~i~~~~~~g~~l~~GLs~~~ai~ai~lG~~i~~~~~----~l~g~~G~~~Gl~ 90 (484)
T PRK11375 15 EDLLPKTQSQRTWKTFNYFTLWMGSVHNVPNYVMVGGFFILGLSTFSIMLAIILSAFFIAAVM----VLNGAAGSKYGVP 90 (484)
T ss_pred CCCCcCCccccCCcHHHHHHHHHHHhccHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHH----HHhcccccccCCC
Confidence 3344556678889998888877766433 111 11122221 223345555555554323333 33555555555 4
Q ss_pred hhHhHHHhhCChHHHHHHHHHH-HHHhhhHHHHHHHHHHHH----HHhccccC----------CchHHHHHHHHHHHHHH
Q 012131 89 YVVWVASALGPHWGFQQGWMKW-LSGVIDNALYPVLFLDYL----KSAIPALE----------GGFPRIVAVLLLTTALT 153 (470)
Q Consensus 89 ~y~~~~~~~g~~~g~~~g~~~~-~~~~~~~~~~~~~~~~~~----~~~~~~~~----------~~~~~~~~~~~~~~~~~ 153 (470)
.....+..||.+-+.+...... +..+...+......++.+ +..+|.+. .+.+..+..+++.++..
T Consensus 91 ~~v~sR~sFG~~Gs~l~~~~rai~~~igW~~vqt~~~g~al~~~l~~i~~~~~~~~~~~~~~g~~~~~~i~~~i~~~l~~ 170 (484)
T PRK11375 91 FAMILRASYGVRGALFPGLLRGGIAAIMWFGLQCYAGSLALLILIGKIWPGFLTLGGDFTLLGLSLPGLITFLIFWLVNV 170 (484)
T ss_pred hhHhHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCCcHHHHHHHHHHHHHHH
Confidence 5567777899876666666553 343444444444444433 34443211 11223344445555666
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCccccc-ccc----ccchHHHHHHH---Hhhhh-hHHHhhhh
Q 012131 154 YMNYRGLTIVGWVAIVLGVFSLVPFALMGLIAIPRLKPWRWCMV-DLK----NVNWGLYLNTL---FWNLN-YWDSISTL 224 (470)
Q Consensus 154 ~~n~~g~~~~~~~~~i~~~~~i~~~~~~~i~~~~~~~~~~~~~~-~~~----~~~~~~~~~~~---~~~~~-G~e~~~~~ 224 (470)
.+.+.|.|...+++.+...+..+..+...+..+...+....... ... ......+..++ +-.+. +.-..+.+
T Consensus 171 ~~~~~g~~~i~~l~~i~~p~~~i~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~vig~~~~~~~~~~D~ 250 (484)
T PRK11375 171 GIGFGGGKVLNKFTAILNPCIYIVFGGMAIWAISLVGIGPIFDYIPSGIQKAENSGFLFLVVINAVVAVWAAPAVSASDF 250 (484)
T ss_pred HHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhccCcccccCCcchHHHHHHHHHHHHHHHHHHHccccch
Confidence 66778889999988887777665555555444433322211111 100 00111122211 11222 22345567
Q ss_pred hccccCCCCchhHHHHHHHHHHHHHHHHHHHHHH-hccCCCcccccccHHHHHHHHhcchhHHHHHHHHHHHHhHHHHH-
Q 012131 225 VGEVEDPGKTLPRALFYALILVVFAYFFPLLIGT-GAAPVHRELWSDGYFSVIAKLIGGVWLRTWIQGASAVSNMGMFI- 302 (470)
Q Consensus 225 ~~E~k~P~k~ip~ai~~~~~~~~~~y~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 302 (470)
+...|||+ +.-++...+..+...+......... +.... -.....+|...+ ..........+..+..++++.++..
T Consensus 251 tRy~k~~~-~~~~~~~~g~~i~~~~~~~~g~~~~~~a~~~-~g~~~~dp~~i~-~~~~~~~~~~~a~l~~v~a~~~tN~~ 327 (484)
T PRK11375 251 TQNAHSFR-AQALGQTLGLVVAYILFAVASVCIIAGASIH-YGADTWNVLDIV-QRWDSLFASFFAVLVILMTTISTNAT 327 (484)
T ss_pred hcccCChh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCcCCHHHHH-HHhcchHHHHHHHHHHHHHHHHHHHH
Confidence 77777764 4445666565554444322222221 11000 001224454433 3333333333344445555555543
Q ss_pred HHhhhhhHHHHhhhhcCCCchhhhhcCCCCCChHHHHHHHHHHHHHH
Q 012131 303 AEMSSDSFQLLGMAERGMLPEIFARRSQYGTPLVGILFSASGVILLS 349 (470)
Q Consensus 303 ~~~~~~sR~l~~~a~d~~lP~~~~~~~r~~~P~~ai~~~~~~~~~~~ 349 (470)
..+++. ++.-.+.+||++ ||+ ++.++.++++.++.
T Consensus 328 ~N~ys~-----~~~l~~l~pk~i---~~~----~~~~i~~iig~~~~ 362 (484)
T PRK11375 328 GNIIPA-----GYQIAALAPTKL---TYK----NGVLIASIISLLIC 362 (484)
T ss_pred hhcccH-----HHHHHHhCcCcc---chh----hHHHHHHHHHHHhc
Confidence 233333 234456778543 322 36666666654443
|
|
| >COG1115 AlsT Na+/alanine symporter [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.10 E-value=2.5e-07 Score=89.13 Aligned_cols=288 Identities=13% Similarity=0.125 Sum_probs=169.2
Q ss_pred ccccccchhhHHHhHhhhhcc--cccchhhHHhhhChHHHHHHHHHHHHHHHHHHHHHHHHhhccCc----c---CCchh
Q 012131 20 ERFQKVSVIPLVFLIFYEVSG--GPFGVEDSVMAAGPLLALIGFLFFPFIWSIPEALITAEMGTMFP----E---NGGYV 90 (470)
Q Consensus 20 ~~~r~l~~~~~~~~~~~~v~g--g~~~~~~~~~~~g~~~~~~~~ii~~~~~~~~~al~~~el~~~~p----~---~GG~y 90 (470)
+.++.++.+++++.+.+.-+| -+.+....+..+||.+..|.|+.+.+ ...+.+.=+-|+..|. + .||.-
T Consensus 58 ~~~~~vS~FqAl~~sla~~VGtGNIaGVAtAI~~GGPGAvFWMWi~Al~--Gmat~f~E~~La~~Yr~kd~~G~~~GGP~ 135 (452)
T COG1115 58 AGKGGVSSFQALMTSLAARVGTGNIAGVATAIALGGPGAVFWMWIVALF--GMATKFAESTLAQKYRVKDKDGEYRGGPA 135 (452)
T ss_pred CCCCCcChHHHHHHHHHhccCcchHHHHHHHHHcCCCccHHHHHHHHHH--HHHHHHHHHHHHhheeEeCCCCCCcCChH
Confidence 577889999999999998666 46677778888999988888887765 4445554455666655 2 48999
Q ss_pred HhHHHhhCC-hHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 012131 91 VWVASALGP-HWGFQQGWMKWLSGV-IDNALYPVLFLDYLKSAIPALEGGFPRIVAVLLLTTALTYMNYRGLTIVGWVAI 168 (470)
Q Consensus 91 ~~~~~~~g~-~~g~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~ 168 (470)
+|.++.+|. .+|.+........+. .....-+...++.++..++ .+.+...+++.++...+-+-|+|..+++..
T Consensus 136 yYi~kGl~~r~l~v~FA~~li~afg~i~n~vQ~NsIa~a~~~af~-----~~~~~~gi~la~l~~~VI~GGi~rIa~v~~ 210 (452)
T COG1115 136 YYIEKGLGMRWLAVLFAFALIAAFGFIGNGVQSNSIASALANAFG-----IPPLVTGIVLALLVALVIFGGIKRIAKVSS 210 (452)
T ss_pred HHHHhhcCCcHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHhcC-----CcHHHHHHHHHHHHHHHHHcchHHHHHHHH
Confidence 999999994 457666655555444 2444445555666666554 467888888888899999999999888776
Q ss_pred HHHHHHHHHHHHHHHHHh-hccC--C--------CccccccccccchHHH--HHHH-------Hhhh---hhHHHhhhhh
Q 012131 169 VLGVFSLVPFALMGLIAI-PRLK--P--------WRWCMVDLKNVNWGLY--LNTL-------FWNL---NYWDSISTLV 225 (470)
Q Consensus 169 i~~~~~i~~~~~~~i~~~-~~~~--~--------~~~~~~~~~~~~~~~~--~~~~-------~~~~---~G~e~~~~~~ 225 (470)
...-+.-+.-++..++.+ .+.+ | +.+.+.. ...|..+. ...+ +|+- .|....++.+
T Consensus 211 ~vVPfMA~~Yi~~~~~Ii~~n~~~iP~~i~~If~sAF~~~a-a~GG~~G~~v~~aI~~Gv~RGlfSNEAGmGsap~aaAa 289 (452)
T COG1115 211 KVVPFMAILYVLVALVIIVLNISQIPAVIALIFSSAFGPKA-AAGGFAGYTVAQAIRNGVKRGLFSNEAGMGSAPIAAAA 289 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHhhhHHHHHHHHHhcCCchh-hhhhhhhHHHHHHHHHHHHHHhhcccccCCcchhHHHh
Confidence 544433332222222211 1111 1 1111111 01111111 0111 1221 2444555666
Q ss_pred ccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHhccCCCccc-ccccHHHH-HHHHhcchhHHHHHHHHHHHHhHHHHHH
Q 012131 226 GEVEDPGKTLPRALFYALILVVFAYFFPLLIGTGAAPVHREL-WSDGYFSV-IAKLIGGVWLRTWIQGASAVSNMGMFIA 303 (470)
Q Consensus 226 ~E~k~P~k~ip~ai~~~~~~~~~~y~l~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (470)
.+++||-|+=-..++.-.+=+.++=....+.++..-.++..+ .++..+.+ ..+...++++..++.+...+-.++++++
T Consensus 290 A~~~hPv~QGlv~~~gvfiDT~iVCt~Ta~iIL~sg~~~~~~~~~G~~ltq~A~~~~~g~~G~~fv~i~l~lFafTTIlg 369 (452)
T COG1115 290 AKTDHPVKQGLVQMLGVFIDTLVVCTATAFIILLSGAWNSGGGLSGAALTQAAFSSHLGSWGSYFVAIALFLFAFTTILG 369 (452)
T ss_pred hcCCCcHHHhHHHHhhhhhhhhHHhhHHHHHHHHcCCcccCCCCchHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHH
Confidence 788888665322222222213233333333333322222222 23344444 3455677789999999988889999999
Q ss_pred HhhhhhHHHHhh
Q 012131 304 EMSSDSFQLLGM 315 (470)
Q Consensus 304 ~~~~~sR~l~~~ 315 (470)
+.+..-|.+.=+
T Consensus 370 ~yyyge~~~~fl 381 (452)
T COG1115 370 WYYYGEKNIEFL 381 (452)
T ss_pred HHHHHHHHHHHH
Confidence 887666655433
|
|
| >PTZ00206 amino acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=4e-07 Score=92.25 Aligned_cols=235 Identities=14% Similarity=0.123 Sum_probs=139.4
Q ss_pred hhHHHhHhhhhcc-cccchhhHHhhhChHHHHHHHHHHHHHHHHHHHHHHHHhhccCccCCchhHhHHHhhCChHHHHHH
Q 012131 28 IPLVFLIFYEVSG-GPFGVEDSVMAAGPLLALIGFLFFPFIWSIPEALITAEMGTMFPENGGYVVWVASALGPHWGFQQG 106 (470)
Q Consensus 28 ~~~~~~~~~~v~g-g~~~~~~~~~~~g~~~~~~~~ii~~~~~~~~~al~~~el~~~~p~~GG~y~~~~~~~g~~~g~~~g 106 (470)
.+..+-.+.+++| |+.+.|....++|-...++..++.+++ +........+.+.+ ++.-....-+++.+||...++..
T Consensus 63 ~~s~fnL~~~~iGaGILsLP~Af~~~G~v~giillil~a~l-s~ys~~lL~~~~~~-~~~~sY~~la~~~~G~~g~~~v~ 140 (467)
T PTZ00206 63 AASAFNIASSTVGAGIVGLPSAANSSGLVMAMIYLIIITAM-TIFSIYALGVAADK-TNIRTYEGVARVLLGPWGSYYVA 140 (467)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHH-HHHHHHHHHHHhcc-CCCCCHHHHHHHHhCHHHHHHHH
Confidence 4455555555677 999999999988876555555555543 33334444554544 33345556777789999999999
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHhccccCC-chH------HHHHHHH-HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 012131 107 WMKWLSGVIDNALYPVLFLDYLKSAIPALEG-GFP------RIVAVLL-LTTALTYMNYRGLTIVGWVAIVLGVFSLVPF 178 (470)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~------~~~~~~~-~~~~~~~~n~~g~~~~~~~~~i~~~~~i~~~ 178 (470)
....+.....+.++....++.+...++.... ++. +..+... .++.+-+.-.+.++..+++..+.....+...
T Consensus 141 ~~~~~~~~G~cv~YlIiigd~l~~~l~~~~~~~~~~~~~~~r~~~~~i~~~i~lPLs~~r~i~~L~~~S~i~~~~i~~~v 220 (467)
T PTZ00206 141 ATRAFHGFSACVAYVISVGDILSATLKGTNAPDFLKQKSGNRLLTSLMWLCFMLPLVIPRHIDSLRYVSTIAVSFMVYLV 220 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhccCcEEeeeehhhhHhhhcccccchHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999988877653211 010 0111111 1111122223344555555443332222222
Q ss_pred HHHHHHHhhccCCCcccc-----cc------cc-ccchHHHHHHHHhhhhhHHHhhhhhccccCCC-CchhHHHHHHHHH
Q 012131 179 ALMGLIAIPRLKPWRWCM-----VD------LK-NVNWGLYLNTLFWNLNYWDSISTLVGEVEDPG-KTLPRALFYALIL 245 (470)
Q Consensus 179 ~~~~i~~~~~~~~~~~~~-----~~------~~-~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~P~-k~ip~ai~~~~~~ 245 (470)
+...+....+..+++... .+ .+ .......++...|+|.+.......-+|+|||. |+..|++..++.+
T Consensus 221 i~ivi~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~algi~~faF~~h~~~~~i~~~M~~~t~~~~~~v~~~s~~i 300 (467)
T PTZ00206 221 IVIVVHSCMNGLPENIKNVSVGKDDNAEIILFNSGNRAIEGLGVFIFAYVFQITAYEVYMDMTNRSVGKFVLASTIAMGM 300 (467)
T ss_pred hhhhhhhhcccCcccccccccCCCCCCceEEecCchHHHhhhhHHHhhhhhhhhhHHHHHhhcccchhHHHHHHHHHHHH
Confidence 111111111221111110 00 00 01223344555799999999999999999974 7788999999999
Q ss_pred HHHHHHHHHHHHHhccCCC
Q 012131 246 VVFAYFFPLLIGTGAAPVH 264 (470)
Q Consensus 246 ~~~~y~l~~~~~~~~~~~~ 264 (470)
+.++|.+..+.-....+.+
T Consensus 301 ~~~lY~~~G~~GYl~fG~~ 319 (467)
T PTZ00206 301 CFTMYVLTAFFGYMDFGRN 319 (467)
T ss_pred HHHHHHHHHHhhhhccccc
Confidence 9999999887766555443
|
|
| >PRK11017 codB cytosine permease; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=2.5e-05 Score=77.75 Aligned_cols=215 Identities=11% Similarity=0.026 Sum_probs=110.7
Q ss_pred ccccccchhhHHHhHhhhhcc-cccchhhHHhh-hChHHHHHHHHHHHHHHHHHHHHHHHHhhccCccCC-chhHhHHHh
Q 012131 20 ERFQKVSVIPLVFLIFYEVSG-GPFGVEDSVMA-AGPLLALIGFLFFPFIWSIPEALITAEMGTMFPENG-GYVVWVASA 96 (470)
Q Consensus 20 ~~~r~l~~~~~~~~~~~~v~g-g~~~~~~~~~~-~g~~~~~~~~ii~~~~~~~~~al~~~el~~~~p~~G-G~y~~~~~~ 96 (470)
+++|+ +.++....-.+..+. ..+.....+.. -+....+++.+++.++..++.++ .+..-|+.| ......+..
T Consensus 6 ~~~r~-~~~~~~~~~~g~~~~~~~~~~g~~l~~GLs~~~ai~aiilG~~i~~~~~~l----~~~~G~k~G~~~~v~sR~~ 80 (404)
T PRK11017 6 QSARK-GVLSLTMVMLGFTFFSASMWAGGTLGTGLSFVDFLLAVLIGNLLLGIYTAA----LGYIGAKTGLSTHLLARFS 80 (404)
T ss_pred HHHhc-chHhHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH----HHHHHhccCcCHHHHHHHH
Confidence 34555 777765544443211 11112222222 33434556666665443333333 444555555 445566777
Q ss_pred hCChHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 012131 97 LGPHWGFQQGWMKWLSGVIDNALYPVLFLDYLKSAIPALEGGFPRIVAVLLLTTALTYMNYRGLTIVGWVAIVLGVFSLV 176 (470)
Q Consensus 97 ~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~i~~~~~i~ 176 (470)
||.+-+.+......+..+...+......+..++..++. +.....+++.++.......|.|...+++.+......+
T Consensus 81 FG~~Gs~l~~~~~~i~~igW~av~~~~~~~~l~~~~~~-----~~~~~~~i~~~l~~~~~~~G~~~i~~~~~~~~p~~~~ 155 (404)
T PRK11017 81 FGEKGSWLPSLLLGFTQVGWFGVGVAMFAIPVVKATGL-----DINLLIVLSGLLMTVTAYFGISALTILSRIAVPAIAL 155 (404)
T ss_pred hchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99988888887777766666666666556555554432 1122333445566667788888888988887766655
Q ss_pred HHHHHHHHHhhccC-CCcc-ccccccccchHHHHHHHH-hhhhhHHHhhhhhccccCCCCchhHHHHHHHHH
Q 012131 177 PFALMGLIAIPRLK-PWRW-CMVDLKNVNWGLYLNTLF-WNLNYWDSISTLVGEVEDPGKTLPRALFYALIL 245 (470)
Q Consensus 177 ~~~~~~i~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~-~~~~G~e~~~~~~~E~k~P~k~ip~ai~~~~~~ 245 (470)
.++...+....+.+ .... ...+.....+...+...+ +...+.-..+.++...|+|++.+ .+...+..+
T Consensus 156 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~g~~~~~~~~~~DysRy~k~~~~~~-~~~~lg~~i 226 (404)
T PRK11017 156 LGGYSVWLAVNDVGGLDGLKAIVPAEPLDFSAALTLVVGSFISGGTLTADFVRFGRSAKIAV-LATMVAFFL 226 (404)
T ss_pred HHHHHHHHHHhccCchhhhhcCCCCCcccHHHHHHHHHHHHHHhHhcCCChHhhccCcccee-ehhHHHHHH
Confidence 55444443333322 1111 111111223333332221 22333445667777788765433 444444433
|
|
| >PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR) | Back alignment and domain information |
|---|
Probab=98.95 E-value=3.4e-11 Score=120.66 Aligned_cols=240 Identities=15% Similarity=0.206 Sum_probs=149.1
Q ss_pred cccchhhHHHhHhhhhcc-cccchhhHHhhhChHHHHHHHHHHHHHHHHHHHHHHHHhhccCc---cCCchhHhHHHhhC
Q 012131 23 QKVSVIPLVFLIFYEVSG-GPFGVEDSVMAAGPLLALIGFLFFPFIWSIPEALITAEMGTMFP---ENGGYVVWVASALG 98 (470)
Q Consensus 23 r~l~~~~~~~~~~~~v~g-g~~~~~~~~~~~g~~~~~~~~ii~~~~~~~~~al~~~el~~~~p---~~GG~y~~~~~~~g 98 (470)
||-|.++..+..+++++| |+++.|....++|-...++..++.+.+ +........|.....| +.-..-.-+++.+|
T Consensus 1 ~~~s~~~~~~~l~~~~iG~G~L~lP~af~~~G~~~g~i~l~~~~~~-s~~t~~~l~~~~~~~~~~~~~~~y~~l~~~~~G 79 (409)
T PF01490_consen 1 HKGSWFSAFFNLINSIIGAGILSLPYAFAQSGWVLGIILLVLVALL-SYYTMYLLVRAANAMPNGTGRRSYGDLARRAFG 79 (409)
T ss_pred CCccHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhhHHHHHHHHH-HHHhhhhhhcccccccccccccccccccccccc
Confidence 466889999999999888 999999999998876555555555554 5555666677777665 23333345578899
Q ss_pred ChHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccccCC--chHHHHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHH
Q 012131 99 PHWGFQQGWMKWLSGVIDNALYPVLFLDYLKSAIPALEG--GFPRIVAVLLLTTALTYMNYR-GLTIVGWVAIVLGVFSL 175 (470)
Q Consensus 99 ~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~n~~-g~~~~~~~~~i~~~~~i 175 (470)
|+.+++......+........+....++.+....+...+ ......+.++...+...+... ..+...+...+.....+
T Consensus 80 ~~~~~~~~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~pls~~~~l~~l~~~s~~~~~~~~ 159 (409)
T PF01490_consen 80 PKGKWFVDICIFIYLFGSCVAYLIIIGDSLSSLIPSFFGDLFISRYVWIIIFALIVLPLSFLKNLKSLRYLSILGLFSIF 159 (409)
T ss_pred ccccccccchheeccccccceeEEEeeeeeecccccccccccccccccccccccccccccccchhhHHHHHhhhhhhccc
Confidence 999999999988888888888888888888777765322 112222222222233333322 23333333322222211
Q ss_pred HHHHHHHHHHhhc--cCCCcccccc----ccccchHHHHHHHHhhhhhHHHhhhhhccccCCCC--chhHHHHHHHHHHH
Q 012131 176 VPFALMGLIAIPR--LKPWRWCMVD----LKNVNWGLYLNTLFWNLNYWDSISTLVGEVEDPGK--TLPRALFYALILVV 247 (470)
Q Consensus 176 ~~~~~~~i~~~~~--~~~~~~~~~~----~~~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~P~k--~ip~ai~~~~~~~~ 247 (470)
..+.+........ .++.+..... .+..++...++...++|.+......+.+|+|||+| ++.|+...+..+..
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~faf~~~~~~~~i~~~m~~~~~~~~~~~~~~~s~~~~~ 239 (409)
T PF01490_consen 160 YFIVIVVIYIISYGPGEPSGVPSPPVWPFISFSGFFSAFGIIIFAFSCHPNLPPIQSEMKDPSKFKKMKKVLSISMIICF 239 (409)
T ss_pred eeeeeecceeeeeecccccccccccccccchhhHHHHhhhhhhhhhhcccccceeeeeccCCccccccceeeeehhhhhh
Confidence 1111111111111 1111111111 11123445556668999999999999999999875 45699999999999
Q ss_pred HHHHHHHHHHHhccCC
Q 012131 248 FAYFFPLLIGTGAAPV 263 (470)
Q Consensus 248 ~~y~l~~~~~~~~~~~ 263 (470)
++|.+.........+.
T Consensus 240 ~~y~~~g~~gy~~fg~ 255 (409)
T PF01490_consen 240 IIYLLFGIFGYLAFGD 255 (409)
T ss_pred HHhhhhhhcccceeee
Confidence 9999988766655443
|
UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT) and is is predicted to have 10 transmembrane domains UNC47_CAEEL []. MTR is an N system amino acid transporter system protein involved in methyltryptophan resistance MTR_NEUCR. Other members of this family include proline transporters and amino acid transporters whose specificity has not yet been identified. |
| >COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.88 E-value=3.3e-05 Score=75.85 Aligned_cols=167 Identities=11% Similarity=0.079 Sum_probs=96.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCccCCchhHhHHHhhCChHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccccCC
Q 012131 58 LIGFLFFPFIWSIPEALITAEMGTMFPENGGYVVWVASALGPHWGFQQGWMKWLSGVIDNALYPVLFLDYLKSAIPALEG 137 (470)
Q Consensus 58 ~~~~ii~~~~~~~~~al~~~el~~~~p~~GG~y~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (470)
+++.+++-++..+.+++ +++++.+..- -+..-.+..+|.+-+++.....++.++.........+++..... +
T Consensus 55 i~aillG~llG~i~~A~-~s~~Ga~~Gl--pqmi~sR~~fG~~Gs~l~sll~~~~~iGW~~v~~~l~~~a~~~~-~---- 126 (442)
T COG1457 55 LLAILLGNLLGGIFMAY-FSYQGARTGL--PQMILSRYPFGVKGSILPSLLNGITLIGWFGVNVILSGIAIGSG-T---- 126 (442)
T ss_pred HHHHHHHHHHHHHHHHH-HHHhccccCC--ChheeecccccchhHHHHHHHHHHHHhhHHHHHHHHhccccccC-C----
Confidence 34444444333333333 4455544432 23344455699999988888888888887777777777653222 2
Q ss_pred chHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC--ccccccccccchHHHHHHHHhhh
Q 012131 138 GFPRIVAVLLLTTALTYMNYRGLTIVGWVAIVLGVFSLVPFALMGLIAIPRLKPW--RWCMVDLKNVNWGLYLNTLFWNL 215 (470)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~i~~~~~i~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 215 (470)
..+.++..++.-++..+..+.|.|...+++.+......+..+............. .+...+.++.++...+...+-.+
T Consensus 127 ~~~~~~~ili~g~l~~l~~ifG~r~l~~l~~~a~~~~~~lf~~l~~~~~~~~~~~~~~~~~~~~~~~~fl~a~slv~g~~ 206 (442)
T COG1457 127 GLPVWAGILIIGVLMTLVTIFGYRALHKLERIAVPLLLLLFLYLLALLFRSKGGLDALWVKGPTSPLSFLSALSLVIGSF 206 (442)
T ss_pred CCcHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccceeeccCCCcchhHHHHHHHHHHHH
Confidence 2355566666667888888999999999999888877666655555544322222 22222333445555544443222
Q ss_pred hhH-HHhhhhhccccCCC
Q 012131 216 NYW-DSISTLVGEVEDPG 232 (470)
Q Consensus 216 ~G~-e~~~~~~~E~k~P~ 232 (470)
..| --++.++.-.|+|+
T Consensus 207 ~sw~~~~aDysRy~~~~t 224 (442)
T COG1457 207 ASWGPYAADYSRYAPSPT 224 (442)
T ss_pred HhhhhhhhhhhhhcCCCc
Confidence 222 23445555566654
|
|
| >PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)) | Back alignment and domain information |
|---|
Probab=98.68 E-value=0.00022 Score=70.16 Aligned_cols=327 Identities=14% Similarity=0.083 Sum_probs=177.3
Q ss_pred cchhhHHhh-hCh--HHHHHHHHHHHHHHHHHHHHHHHHhhccCccCCchhHhHHHhhCChHHHHHHHHHHHH--HhhhH
Q 012131 43 FGVEDSVMA-AGP--LLALIGFLFFPFIWSIPEALITAEMGTMFPENGGYVVWVASALGPHWGFQQGWMKWLS--GVIDN 117 (470)
Q Consensus 43 ~~~~~~~~~-~g~--~~~~~~~ii~~~~~~~~~al~~~el~~~~p~~GG~y~~~~~~~g~~~g~~~g~~~~~~--~~~~~ 117 (470)
.-.|+.++. +|. ..+.++++++++..-+..- ++.. .+||.+.=..+..||..|.+......+. -....
T Consensus 22 LIFPp~lG~~aG~~~~~a~~GF~lTgV~lP~Lgv-----ia~~--~~~~~~~~l~~~v~~~f~~if~~~i~l~IGP~~ai 94 (427)
T PF05525_consen 22 LIFPPFLGQQAGSNWWPAMIGFLLTGVGLPLLGV-----IAVA--KSGGGIEDLASRVGPKFALIFTILIYLSIGPLFAI 94 (427)
T ss_pred ccchHHHHHHhcchHHHHHHHHHHHHHHHHHHHH-----HHHh--hcCCCHHHHhcccCcHHHHHHHHHHHHHHHhcccC
Confidence 335666655 443 3567888888875333211 2222 2344555556667888887776544432 22222
Q ss_pred HHH-HHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcccc
Q 012131 118 ALY-PVLFLDYLKSAIPALEGGFPRIVAVLLLTTALTYMNYRGLTIVGWVAIVLGVFSLVPFALMGLIAIPRLKPWRWCM 196 (470)
Q Consensus 118 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~i~~~~~i~~~~~~~i~~~~~~~~~~~~~ 196 (470)
+=. +..+...+..+++. ++.....+..+++..+..++.+...|...++-.+++-+-++.++++++.++.+...+.-.+
T Consensus 95 PRtaa~sfe~~i~p~~~~-~~~~~~~ifs~iFF~i~~~l~~~p~kivd~iGk~LTP~LL~~l~ilii~~i~~p~g~~~~~ 173 (427)
T PF05525_consen 95 PRTAAVSFEMGIAPFFPE-NSNISLLIFSIIFFAITYLLSLNPSKIVDRIGKFLTPILLILLAILIIKGIFSPIGPPQAP 173 (427)
T ss_pred cchhhhhHHHhhhccCCc-ccccchhhhhHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcccc
Confidence 212 22222233444443 3456677788888888888888888888888888887777766666666554322211111
Q ss_pred cc--cccc---ch------HHHHHHHHhhhhhHHHhhhhhccccCCCCchhHHHHHH----HHHHHHHHHHHHHHHHhcc
Q 012131 197 VD--LKNV---NW------GLYLNTLFWNLNYWDSISTLVGEVEDPGKTLPRALFYA----LILVVFAYFFPLLIGTGAA 261 (470)
Q Consensus 197 ~~--~~~~---~~------~~~~~~~~~~~~G~e~~~~~~~E~k~P~k~ip~ai~~~----~~~~~~~y~l~~~~~~~~~ 261 (470)
.+ .++. |+ ...++++.| ...=..+--....||+ |+..|....+ .....++|....+.-....
T Consensus 174 ~~~y~~~~f~~Gf~eGY~TMD~laal~F--g~iIi~~i~~~g~~~~-k~~~~~~~~ag~ia~~lL~~IY~gL~~lGa~~~ 250 (427)
T PF05525_consen 174 SGAYASNPFFKGFLEGYQTMDALAALAF--GIIIINAIRQKGYKDK-KEIKKYTIKAGLIAGILLALIYGGLAYLGATSS 250 (427)
T ss_pred chhhhhhHHHHHHHHHHhhhhHHHHHHH--HHHHHHHHHHhCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCc
Confidence 10 0111 11 122233222 2222222222233343 4444555444 4444445554443222222
Q ss_pred CC-CcccccccHHHHHHHHhcchhHHHHHHHHHHHHhHHHHHHHhhhhhHHHHhhhhcCCCchhhhhcCCCCCChH-HHH
Q 012131 262 PV-HRELWSDGYFSVIAKLIGGVWLRTWIQGASAVSNMGMFIAEMSSDSFQLLGMAERGMLPEIFARRSQYGTPLV-GIL 339 (470)
Q Consensus 262 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~~~~~~~r~~~P~~-ai~ 339 (470)
+. .+..+....+.++.++..|+.+..++.+.+.++++++..+-..+.+....+. .+ +.+++ .+.
T Consensus 251 ~~~~~~~~g~~lL~~i~~~~~G~~G~~ll~iiv~lACLTTaIGL~~a~a~yf~~~-------------~~-kisY~~~v~ 316 (427)
T PF05525_consen 251 GSFPDDINGAELLSQIANHLFGSAGQILLGIIVFLACLTTAIGLISACAEYFSEL-------------FP-KISYKVWVI 316 (427)
T ss_pred ccccCCCCHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------hc-ccChHHHHH
Confidence 21 2222334567788888999999999999999999999998888777655443 33 44444 345
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH--HHHHHHHhhCCCCCCCcccCCc
Q 012131 340 FSASGVILLSWLSFQEIVAAENFLYCFAMIMEF--IAFVKLRMQYPEAIRPYKVPLG 394 (470)
Q Consensus 340 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 394 (470)
+..+++.+++...++.++..+.=...+.|=... +.+-..++..++++..||....
T Consensus 317 i~~i~S~~ian~Gl~~Ii~~s~PiL~~iYP~~IvLIll~l~~~~~~~~~~~y~~~v~ 373 (427)
T PF05525_consen 317 IFTIFSFIIANLGLDQIIKISVPILMFIYPVAIVLILLNLFDKFIKNKKIVYRGTVL 373 (427)
T ss_pred HHHHHHHHHHHhCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCceeeeeeh
Confidence 556677777777888888777665555553332 2222222333333445665443
|
They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane |
| >TIGR00800 ncs1 NCS1 nucleoside transporter family | Back alignment and domain information |
|---|
Probab=98.62 E-value=0.00046 Score=69.76 Aligned_cols=231 Identities=10% Similarity=-0.002 Sum_probs=113.3
Q ss_pred cccccccccchhhHHHhHhhhhcc-cccchhhHHhh--hChHHHHHHHHHHHHHHHHHHHHHHHHhhccCccCC-chhHh
Q 012131 17 PKLERFQKVSVIPLVFLIFYEVSG-GPFGVEDSVMA--AGPLLALIGFLFFPFIWSIPEALITAEMGTMFPENG-GYVVW 92 (470)
Q Consensus 17 ~~~~~~r~l~~~~~~~~~~~~v~g-g~~~~~~~~~~--~g~~~~~~~~ii~~~~~~~~~al~~~el~~~~p~~G-G~y~~ 92 (470)
+.++++|+-++++...+=++.... ..+..+..... -+....+++.+++.++.+++.++ .+..-|+.| .....
T Consensus 6 pvp~~~R~~~~~~~~~~W~~~~~~v~~~~~Ga~l~~~GLs~~~ailai~lG~~i~~~~~~l----~~~~G~r~Gl~~~v~ 81 (442)
T TIGR00800 6 PVKEEERTWSFLNYFSLWLGAAFNIATWAIGALGLPLGLSWWQSVIAIILGNLLGGIFVAL----NSRAGAKYGLPFPVL 81 (442)
T ss_pred CCCcccCCccHHHHHHHHHHHhhhHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHH----hhhhHHHhCCCcchh
Confidence 344566777888887776665433 11222222222 23334555656655443333333 444555544 45667
Q ss_pred HHHhhCChHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccccCCc----h-----HHHHHHHHHHHHHH-HHHhhhhHH
Q 012131 93 VASALGPHWGFQQGWMKWLSGVIDNALYPVLFLDYLKSAIPALEGG----F-----PRIVAVLLLTTALT-YMNYRGLTI 162 (470)
Q Consensus 93 ~~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-----~~~~~~~~~~~~~~-~~n~~g~~~ 162 (470)
.+..||.+-+.+.....++..+...+......++.++..+....+. . ......+++..+.. .....|.|.
T Consensus 82 sR~~FG~~Gs~~~~~~~~i~~igW~av~~~~~g~al~~~l~~i~~~~~~~~~~~t~~~~~~~~i~~~l~~~~~~~~g~~~ 161 (442)
T TIGR00800 82 SRASFGIYGSLLPSLLRIVMAIGWYGVQAWVGGLCVALMLDSIFPGYLHLGNGMTTLELICFIIFWALVLVFLFFFGYKI 161 (442)
T ss_pred hhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcccccccCCcccHHHHHHHHHHHHHHHHHHHcCHHHH
Confidence 7888999988888888888888888888777776665554321111 1 12222222222222 234556665
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCCCc-ccccc--ccccchHHHHHHH---H-hhhhhHHHhhhhhccccCCCCch
Q 012131 163 VGWVAIVLGVFSLVPFALMGLIAIPRLKPWR-WCMVD--LKNVNWGLYLNTL---F-WNLNYWDSISTLVGEVEDPGKTL 235 (470)
Q Consensus 163 ~~~~~~i~~~~~i~~~~~~~i~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~---~-~~~~G~e~~~~~~~E~k~P~k~i 235 (470)
..+.+.......++.+++............+ ....+ ..+.....++..+ . +...+.-.++.++...|+|+. .
T Consensus 162 ~~~~~~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~g~~~s~~~~~~DysRy~~~~~~-~ 240 (442)
T TIGR00800 162 RHLFEWLAVVPPFAAFGMLIWALSKAHGKGPLGELTGTLHGSTGAWAFLYALSLVIGSFATWATNAPDFTRFGKSKKT-A 240 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccccCCCCCCcchhHHHHHHHHHHHHHHHHHHHcCchhhhhhcCCccc-h
Confidence 5555554444433333333322222221111 11111 1111222222222 1 222334456777778887644 4
Q ss_pred hHHHHHHHHHHHHHHHH
Q 012131 236 PRALFYALILVVFAYFF 252 (470)
Q Consensus 236 p~ai~~~~~~~~~~y~l 252 (470)
.+....+.....+...+
T Consensus 241 ~~~~~~~~~~~~~~~~~ 257 (442)
T TIGR00800 241 IWGQFLALPGGFTLTCF 257 (442)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45555555544433333
|
The NCS1 family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism. |
| >TIGR02119 panF sodium/pantothenate symporter | Back alignment and domain information |
|---|
Probab=98.59 E-value=0.0012 Score=67.38 Aligned_cols=280 Identities=11% Similarity=0.006 Sum_probs=138.0
Q ss_pred cccccchhhHHHhHhhhhcc--cccchhhHHhhhChHHHHHHHH---HHHHHHHHHHHHHHHHhhccCccCCchhHhHHH
Q 012131 21 RFQKVSVIPLVFLIFYEVSG--GPFGVEDSVMAAGPLLALIGFL---FFPFIWSIPEALITAEMGTMFPENGGYVVWVAS 95 (470)
Q Consensus 21 ~~r~l~~~~~~~~~~~~v~g--g~~~~~~~~~~~g~~~~~~~~i---i~~~~~~~~~al~~~el~~~~p~~GG~y~~~~~ 95 (470)
-.|+++++...+..+++..| ...+.+......|.....+.+. .+.++ ....+.-+.++.++. +.-..++|.++
T Consensus 38 agr~l~~~~~~~s~~at~~s~~t~~g~~g~~y~~G~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~T~~e~l~~ 115 (471)
T TIGR02119 38 GGRSMGGFVLAMTLVATYGSASSFIGGPGIAYNYGLGWVLLAMIQVPTGYFV-LGVLGKKFAIISRKY-NAITINDVLKA 115 (471)
T ss_pred eCCcccHHHHHHHHHHHHhhHHHHcCcHHHHHHhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHc-CCccHHHHHHH
Confidence 56889999888877777545 3445565555555432211111 11111 111122234444444 34578889999
Q ss_pred hhCCh-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 012131 96 ALGPH-WGFQQGWMKWLSGVIDNALYPVLFLDYLKSAIPALEGGFPRIVAVLLLTTALTYMNYRGLTIVGWVAIVLGVFS 174 (470)
Q Consensus 96 ~~g~~-~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~i~~~~~ 174 (470)
-||++ .....+....+.............+..++..++. + .+..+.+..++.......-|.|...+.+.+-..+.
T Consensus 116 Ryg~~~~~~~~~i~~i~~~~~~~~~ql~g~g~~l~~~~gi---~-~~~~iii~~~iv~iYt~~GG~~av~~td~iQ~~v~ 191 (471)
T TIGR02119 116 RYNNKFLVWLSSISLLVFFFSAMVAQFIGGARLIESLTGL---S-YLTALFIFSSSVLIYTTFGGFRAVALTDAIQGIVM 191 (471)
T ss_pred HcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---C-HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 99955 5666666665555555555555556666655542 1 12222222233555556667787777666555544
Q ss_pred HHHHHHHHHHHhhcc-C------------CCccccccccccch-HHHHHHHHhhhh-----hHHHhhhhhccccCCCCch
Q 012131 175 LVPFALMGLIAIPRL-K------------PWRWCMVDLKNVNW-GLYLNTLFWNLN-----YWDSISTLVGEVEDPGKTL 235 (470)
Q Consensus 175 i~~~~~~~i~~~~~~-~------------~~~~~~~~~~~~~~-~~~~~~~~~~~~-----G~e~~~~~~~E~k~P~k~i 235 (470)
++..+++.+....+. + ++.+.+.. ..++ .......+|... +.+...+-.-..||+ |+.
T Consensus 192 ~~~~~~~~~~~l~~~gG~~~~~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~p~~~~R~~aak~~-~~a 268 (471)
T TIGR02119 192 FTGTTILLIAVIKAGGGVEKIMEKLKDIDPNLITPFG--GDGGLTKPFVASFWILVGIGVIGLPQTAVRCMSYKDS-KAM 268 (471)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHhcCccccCCCC--CCcchhhhHHHHHHHHHHHHHhCchHHHHHHHhcCCH-HHH
Confidence 444433333322211 1 11111111 1111 111111112222 222222233445664 778
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhc-cCCCcccccccHHHHHHHHhcchhHHHHHHHHHHHHhHHHHHHHhhhhh
Q 012131 236 PRALFYALILVVFAYFFPLLIGTGA-APVHRELWSDGYFSVIAKLIGGVWLRTWIQGASAVSNMGMFIAEMSSDS 309 (470)
Q Consensus 236 p~ai~~~~~~~~~~y~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 309 (470)
.|+..++..+...++....+.-... .-..+....+..+..+..+..+++...++....+.+.+++..+.+.+.+
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~G~~a~~~~p~~~~~d~~~p~~~~~~lp~~~~gl~~a~llaA~mST~~s~l~~~s 343 (471)
T TIGR02119 269 HRAMIIGTIVVGIIMLGMHLAGVLGRAVIPDLTVPDKVIPLLAIKVLPPILAGIFLAAPMAAIMSTVNSLLLQSS 343 (471)
T ss_pred hhhHhHHHHHHHHHHHHHHHHHHhhhhhccCCCCccchHHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888766555554433322111 0011222234455556566677777777777666677777666655544
|
Pantothenate (vitamin B5) is a precursor of coenzyme A and is made from aspartate and 2-oxoisovalerate in most bacteria with completed genome sequences. However, some pathogens must import pantothenate. This model describes PanF, a sodium/pantothenate symporter, from a larger family of Sodium/substrate symporters (pfam00474). Several species that have this transporter appear to lack all enzymes of pantothenate biosynthesis, namely Haemophilus influenzae, Pasteurella multocida, Fusobacterium nucleatum, and Borrelia burgdorferi. |
| >PRK15419 proline:sodium symporter PutP; Provisional | Back alignment and domain information |
|---|
Probab=98.56 E-value=0.0011 Score=68.19 Aligned_cols=148 Identities=11% Similarity=0.010 Sum_probs=75.2
Q ss_pred cccccchhhHHHhHhhhhcc--cccchhhHHhhhChHHH--HHHHHHHHHHHHHHHHHHHH-Hh---hccCccCCchhHh
Q 012131 21 RFQKVSVIPLVFLIFYEVSG--GPFGVEDSVMAAGPLLA--LIGFLFFPFIWSIPEALITA-EM---GTMFPENGGYVVW 92 (470)
Q Consensus 21 ~~r~l~~~~~~~~~~~~v~g--g~~~~~~~~~~~g~~~~--~~~~ii~~~~~~~~~al~~~-el---~~~~p~~GG~y~~ 92 (470)
-.|+++++...+...++..+ ...+.|......|.... .+++.++..+ ....+. .+ ..+.++.-..+.|
T Consensus 38 agr~l~~~~~~~s~~At~~Sa~t~iG~~g~~y~~G~~~~~~~~~~~~~~~l----~~~~~~~~l~~~~~~~~~~~T~~e~ 113 (502)
T PRK15419 38 GGRSLGPFVTALSAGASDMSGWLLMGLPGAVFLSGISESWIAIGLTLGAWI----NWKLVAGRLRVHTEYNNNALTLPDY 113 (502)
T ss_pred eCCCccHHHHHHHHHHHHHHHHHHHHhhHHHHHcCHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhcCceeHHHH
Confidence 46899998887766666444 34455666555564321 1111111111 011111 11 1112233467889
Q ss_pred HHHhhCC---hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 012131 93 VASALGP---HWGFQQGWMKWLSGVIDNALYPVLFLDYLKSAIPALEGGFPRIVAVLLLTTALTYMNYRGLTIVGWVAIV 169 (470)
Q Consensus 93 ~~~~~g~---~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~i 169 (470)
.++-||+ ....+.+....+......+......+..++..++. + ....+.+...+.......-|.|...+...+
T Consensus 114 l~~Ry~~~~~~~~~~~~i~~~~~~~~~~~~ql~~~~~~l~~~~gi---~-~~~~iii~~~iv~iYt~~GGl~aV~~TD~i 189 (502)
T PRK15419 114 FTGRFEDKSRILRIISALVILLFFTIYCASGIVAGARLFESTFGM---S-YETALWAGAAATILYTFIGGFLAVSWTDTV 189 (502)
T ss_pred HHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC---C-HHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 9999985 34555555555555555555555555566555542 1 222233333445556666677777766655
Q ss_pred HHHHHHH
Q 012131 170 LGVFSLV 176 (470)
Q Consensus 170 ~~~~~i~ 176 (470)
=.++.++
T Consensus 190 Q~~imi~ 196 (502)
T PRK15419 190 QASLMIF 196 (502)
T ss_pred HHHHHHH
Confidence 4444333
|
|
| >PRK09442 panF sodium/panthothenate symporter; Provisional | Back alignment and domain information |
|---|
Probab=98.45 E-value=0.0029 Score=64.75 Aligned_cols=280 Identities=11% Similarity=0.016 Sum_probs=135.5
Q ss_pred cccccchhhHHHhHhhhhcc--cccchhhHHhhhChHHHHHHHH--HHHHHHHHHHHHHHHHhhccCccCCchhHhHHHh
Q 012131 21 RFQKVSVIPLVFLIFYEVSG--GPFGVEDSVMAAGPLLALIGFL--FFPFIWSIPEALITAEMGTMFPENGGYVVWVASA 96 (470)
Q Consensus 21 ~~r~l~~~~~~~~~~~~v~g--g~~~~~~~~~~~g~~~~~~~~i--i~~~~~~~~~al~~~el~~~~p~~GG~y~~~~~~ 96 (470)
-.|+++++-..+...++..+ ...+.+......|-.....+.. ....+.....+.-+.++.++. +.=..++|.++.
T Consensus 39 agr~~~~~~~~~s~~at~~s~~t~ig~~g~~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~-~~~T~~e~l~~R 117 (483)
T PRK09442 39 GNRSMGGFVLAMTLIATYISASSFIGGPGAAYKYGLGWVLLAMIQVPTVWLSLGILGKKFAILARKY-NAVTLNDMLRAR 117 (483)
T ss_pred eCCCccHHHHHHHHHHHHhhHhHHhCChhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCccHHHHHHHH
Confidence 56889988777777666544 3445555555555432211111 111110111233345556654 344788899999
Q ss_pred hCCh-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 012131 97 LGPH-WGFQQGWMKWLSGVIDNALYPVLFLDYLKSAIPALEGGFPRIVAVLLLTTALTYMNYRGLTIVGWVAIVLGVFSL 175 (470)
Q Consensus 97 ~g~~-~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~i~~~~~i 175 (470)
||++ .....+....+..+..........+..++..++. + ......+..++...+..+-|.|...+...+-.++.+
T Consensus 118 yg~~~~~~~~~i~~~~~~~~~~~~ql~~~g~~l~~~~gi---~-~~~~iii~~~iv~iYt~~GGl~av~~TD~iQ~~i~~ 193 (483)
T PRK09442 118 YQSRLLVWLASLSLLVFFFAAMTAQFIGGARLLETATGI---S-YETGLLIFGITVALYTAFGGFRAVVLTDALQGIVML 193 (483)
T ss_pred hCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC---C-HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 9865 5666666666555555666666666666666542 1 112222223334555566677777766655544444
Q ss_pred HHHHHHHHHHhhc-------------cCCCccccccccc-cchHHHHHHHH---hhhhhHHHhhhhhccccCCCCchhHH
Q 012131 176 VPFALMGLIAIPR-------------LKPWRWCMVDLKN-VNWGLYLNTLF---WNLNYWDSISTLVGEVEDPGKTLPRA 238 (470)
Q Consensus 176 ~~~~~~~i~~~~~-------------~~~~~~~~~~~~~-~~~~~~~~~~~---~~~~G~e~~~~~~~E~k~P~k~ip~a 238 (470)
+..+++.+..... .+++.+.+.+.++ .++.......+ ....+.....+-.=..||+ |+..|+
T Consensus 194 ~~~~vi~~~~~~~~gG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~p~~~qR~~aaks~-~~a~~~ 272 (483)
T PRK09442 194 VGTVILLIGVIHAGGGLENAVQTLQAIDPQLVTPQGADDILSPPFMTSFWILVCFGVIGLPHTAVRCMSYKDS-KALHRG 272 (483)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHhcCccccCCCCCCccccHHHHHHHHHHHHHHHhCCCHHHHHHHHcCCH-HHHHHH
Confidence 4433333322211 1111111111111 11211111111 1111111111111125664 677888
Q ss_pred HHHHHHHHHHHHHHHHHHH---HhccCCCcccccccHHHHHHHHhcchhHHHHHHHHHHHHhHHHHHHHhhhh
Q 012131 239 LFYALILVVFAYFFPLLIG---TGAAPVHRELWSDGYFSVIAKLIGGVWLRTWIQGASAVSNMGMFIAEMSSD 308 (470)
Q Consensus 239 i~~~~~~~~~~y~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (470)
.+++......++......- ....|. .+..+..+..+.++..++++..++...++.+..++..+.+.+.
T Consensus 273 ~~~~~~~~~~~~~~~~~~G~~~~~~~p~--~~~~~~~~p~l~~~~lp~~l~gl~~a~~~aA~mST~~s~l~~~ 343 (483)
T PRK09442 273 IIIGTIVVGFLMFGMHLAGALGRAVLPD--LTVPDKVIPTLMLKVLPPFAAGIFLAAPMAAIMSTVDSQLLQS 343 (483)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCC--CCCccchHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8887766555554433321 112232 1223444555666777787777777766666666665555443
|
|
| >KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.41 E-value=8.2e-05 Score=73.33 Aligned_cols=237 Identities=17% Similarity=0.165 Sum_probs=122.3
Q ss_pred ccccchhhHHHhHhhhhcc-cccchhhHHhhhChHHHHHHHHHHHHHHHHHHHHHHHHhhccCccCCchhHhHHHhhCCh
Q 012131 22 FQKVSVIPLVFLIFYEVSG-GPFGVEDSVMAAGPLLALIGFLFFPFIWSIPEALITAEMGTMFPENGGYVVWVASALGPH 100 (470)
Q Consensus 22 ~r~l~~~~~~~~~~~~v~g-g~~~~~~~~~~~g~~~~~~~~ii~~~~~~~~~al~~~el~~~~p~~GG~y~~~~~~~g~~ 100 (470)
+++-+....+....+++.| |++..|......|-...++.....+.. .....+...+.+++.++. ..-.-.++.+|+.
T Consensus 3 ~~~~s~~~~v~nl~~ti~GaGIl~~P~afk~~Giv~gi~li~~~a~~-s~~sl~~l~~~a~~~~~~-ty~~l~~~~~g~~ 80 (411)
T KOG1305|consen 3 SGKTSFRSAVFNLVNTIMGAGILAMPYAFKTAGLLLGILLIVLSAFL-SLLSLYLLSKCAKKSGER-TYSSLGDLIFGKL 80 (411)
T ss_pred CCccchhhhHHHHHhhhhccHHHHhHHHHHHhcHHHHHHHHHHHHHH-HHhHHHHHHHhhhhcCCC-CHHHHHHHHcCCC
Confidence 4555777888888888777 999999999998855444555555553 555666677777777766 3334555566654
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHH----HHHHhccccC------CchH-HHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 012131 101 WGFQQGWMKWLSGVIDNALYPVLFLD----YLKSAIPALE------GGFP-RIVAVLLLTTALTYMNYRGLTIVGWVAIV 169 (470)
Q Consensus 101 ~g~~~g~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~------~~~~-~~~~~~~~~~~~~~~n~~g~~~~~~~~~i 169 (470)
-.+............ +..+.....+ .....+.... .+.. ..+.....+..+.+.+ ..... +....
T Consensus 81 g~~~~~v~~~~~~~g-~i~yliiigd~~p~~~~~~~~~~~~~~~~~~~~~~ill~~~~~i~pLsl~k--~l~~L-k~tS~ 156 (411)
T KOG1305|consen 81 GKVDAAVAVKCFGVG-MVSYLIIIGDLLPGFIRSLFLDEEGGSHYLDRNFLILLVLLFIILPLSLLK--NLDSL-KYTSA 156 (411)
T ss_pred ceeeehhhHHhhhcc-ceEEEEEEccccchhhhhcccccccccccccceeEeehHHHHHHHHHHHHH--hhhhH-HHHHH
Confidence 422222111111111 1111111111 1111111000 0000 1122222222222222 22222 22333
Q ss_pred HHHHHHHHHHHHHHHHhhccCC--Cccccccccc---cchHHHHHHHHhhhhhHHHhhhhhccccCCC-CchhHHHHHHH
Q 012131 170 LGVFSLVPFALMGLIAIPRLKP--WRWCMVDLKN---VNWGLYLNTLFWNLNYWDSISTLVGEVEDPG-KTLPRALFYAL 243 (470)
Q Consensus 170 ~~~~~i~~~~~~~i~~~~~~~~--~~~~~~~~~~---~~~~~~~~~~~~~~~G~e~~~~~~~E~k~P~-k~ip~ai~~~~ 243 (470)
.++...+.++...+........ .......++. .++...++...++|...+.....-.|.|||. |++-|....+.
T Consensus 157 ~s~~~~~~fv~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pi~~faf~Ch~n~~~i~~El~~~s~~~i~~v~~~~~ 236 (411)
T KOG1305|consen 157 LSLASVVYFVVLVVYKYFQGPCALGRLSYLVPNLSSFSSLFYALPIFVFAFTCHSNVFPIYNELKDRSVKKIQRVSNIAI 236 (411)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccCCcccccCCcchhhhhhhhhhhhheeeeccccceeeeeeeeCchHHHHHHHHHHHH
Confidence 3333333333333322222111 1111111111 2455566777899999999999999999996 67888888888
Q ss_pred HHHHHHHHHHHHHHHhccCCC
Q 012131 244 ILVVFAYFFPLLIGTGAAPVH 264 (470)
Q Consensus 244 ~~~~~~y~l~~~~~~~~~~~~ 264 (470)
.....+|...........+.+
T Consensus 237 ~~~~~iy~~~g~~GYL~Fg~~ 257 (411)
T KOG1305|consen 237 ILATLIYLLTGLFGYLTFGDL 257 (411)
T ss_pred HHHHHHHHHHHHhhhheeccc
Confidence 888999988877655444433
|
|
| >TIGR02121 Na_Pro_sym sodium/proline symporter | Back alignment and domain information |
|---|
Probab=98.39 E-value=0.004 Score=63.79 Aligned_cols=280 Identities=12% Similarity=0.072 Sum_probs=125.5
Q ss_pred cccccchhhHHHhHhhhhcc--cccchhhHHhhhChHHHHHHHHHHHHHHHHHHHHHHHHhhccC----ccCCchhHhHH
Q 012131 21 RFQKVSVIPLVFLIFYEVSG--GPFGVEDSVMAAGPLLALIGFLFFPFIWSIPEALITAEMGTMF----PENGGYVVWVA 94 (470)
Q Consensus 21 ~~r~l~~~~~~~~~~~~v~g--g~~~~~~~~~~~g~~~~~~~~ii~~~~~~~~~al~~~el~~~~----p~~GG~y~~~~ 94 (470)
-.|+++++-..+-..++..+ ...+.+......|.... +.. ++..+..+...+.+++--+++ ++.-..++|.+
T Consensus 34 agr~~~~~~~~~s~~At~~s~~~~~G~~g~~y~~G~~~~-~~~-~g~~~~~~~~~~~~~~~~r~~~~~~~~~~T~~e~l~ 111 (487)
T TIGR02121 34 GGRSLGPFVTALSAGASDMSGWLLMGLPGALYVTGLSEL-WIA-IGLTIGAYINWKFVAPRLRVYTEAAHNSITLPDFFE 111 (487)
T ss_pred eCCcccHHHHHHHHHHHHHhHHHHHhhHHHHHHhhHHHH-HHH-HHHHHHHHHHHHHHHHHHHHHhHhhcCCccHHHHHH
Confidence 46889888776555554333 23445555555554322 111 111110111122233322222 12335789999
Q ss_pred HhhCC---hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 012131 95 SALGP---HWGFQQGWMKWLSGVIDNALYPVLFLDYLKSAIPALEGGFPRIVAVLLLTTALTYMNYRGLTIVGWVAIVLG 171 (470)
Q Consensus 95 ~~~g~---~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~i~~ 171 (470)
+-||+ ....+.+....+......+......+..++..++. + .+....+...+.......-|.|...+...+=.
T Consensus 112 ~Ryg~~~~~~~~~~ai~~~~~~~~~~~~~l~~~~~~l~~~~gi---~-~~~~iii~~~i~~~Yt~~GGl~av~~TD~iQ~ 187 (487)
T TIGR02121 112 NRFNDKSRLLRIISALIILVFFTIYTSSGLVAGGKLFESTFGL---D-YKTGLLIGALIIVIYTFFGGFLAVSWTDFVQG 187 (487)
T ss_pred HHhCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc---c-HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 99984 34445554444444444555555555566655432 1 22222233344556666667777776655544
Q ss_pred HHHHHHHHHHHHHHhhcc-------------CCCccccccccccchHHHHHHHHhhhhhHHHhhhhh---ccccCCCCch
Q 012131 172 VFSLVPFALMGLIAIPRL-------------KPWRWCMVDLKNVNWGLYLNTLFWNLNYWDSISTLV---GEVEDPGKTL 235 (470)
Q Consensus 172 ~~~i~~~~~~~i~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~G~e~~~~~~---~E~k~P~k~i 235 (470)
++.++..+++.+..+.+. +++..... .+..+........|.+ |.-..+++. =-.||+ |+.
T Consensus 188 ~i~~~~~~~v~~~~~~~~GG~~~~~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~-g~~~~p~~~qR~~aaks~-k~~ 263 (487)
T TIGR02121 188 LLMFFALVLVPIVALFNLGGFGETLSAVAAINPHLLDMF--KGASVIAIISLLAWGL-GYFGQPHIIVRFMAIRSH-KEL 263 (487)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHhhCccccCCC--CCCCHHHHHHHHHHHH-HhccchHHHHHHHhcCCH-HHH
Confidence 444333333332222111 11111111 1122222222222222 111112211 113443 677
Q ss_pred hHHHHHHHHHHHHHHHHHH----HHHHh--ccCCCcccccccHHHHHHHHhcchhHHHHHHHHHHHHhHHHHHHHhhhhh
Q 012131 236 PRALFYALILVVFAYFFPL----LIGTG--AAPVHRELWSDGYFSVIAKLIGGVWLRTWIQGASAVSNMGMFIAEMSSDS 309 (470)
Q Consensus 236 p~ai~~~~~~~~~~y~l~~----~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 309 (470)
.|+...+............ ..... ..|..+....+..+..+.++..+++...++....+.+..++..+.+.+.+
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~p~~~~~~~d~~~~~~~~~~~p~~l~gl~~a~ilaA~mST~~s~l~s~s 343 (487)
T TIGR02121 264 PKARRIGMSWMILSLLGAIAVGLTGIAYFNKNPHVELVDRETIFIVLSQILFHPWIAGILLAAILAAIMSTISSQLLVSS 343 (487)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccCCCcchhHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7887766543222221111 11111 11111112234445556666677777666666666667777766666554
Q ss_pred H
Q 012131 310 F 310 (470)
Q Consensus 310 R 310 (470)
=
T Consensus 344 s 344 (487)
T TIGR02121 344 S 344 (487)
T ss_pred H
Confidence 3
|
This family consists of the sodium/proline symporter (proline permease) from a number of Gram-negative and Gram-positive bacteria and from the archaeal genus Methanosarcina. Using the related pantothenate permease as an outgroup, candidate sequences from Bifidobacterium longum and several from archaea are found to be outside the clade defined by known proline permeases. These sequences, scoring between 570 and -40, define the range between trusted and noise cutoff scores. |
| >TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX | Back alignment and domain information |
|---|
Probab=98.39 E-value=0.0031 Score=62.41 Aligned_cols=196 Identities=11% Similarity=0.052 Sum_probs=111.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCccCC-chhHhHHHhhCChHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccc
Q 012131 56 LALIGFLFFPFIWSIPEALITAEMGTMFPENG-GYVVWVASALGPHWGFQQGWMKWLSGVIDNALYPVLFLDYLKSAIPA 134 (470)
Q Consensus 56 ~~~~~~ii~~~~~~~~~al~~~el~~~~p~~G-G~y~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (470)
..+++.+++.++.+++.++ .+..-|+.| ......+..||.+-+.+......+..+...+......++.++...+.
T Consensus 30 ~ai~aiilG~~i~~~~~~l----~~~~G~~~Gl~~~v~sR~~FG~~Gs~~~~~l~~i~~igW~~v~~~~gg~~l~~~~~~ 105 (386)
T TIGR02358 30 RGLLAILLGHLVGVLLLSA----AGVIGADTGLSAMGSLKLSLGSKGSVLPSLLNLLQLVGWTAVMIIVGAKAASLLGGR 105 (386)
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHhhcccCcCHHHHHHHHHccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555555443444343 455555555 45667778899999888888888888888888888888877776543
Q ss_pred cCCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCccccccccccchHHHHHHHHhh
Q 012131 135 LEGGFPRIVAVLLLTTALTYMNYRGLTIVGWVAIVLGVFSLVPFALMGLIAIPRLKPWRWCMVDLKNVNWGLYLNTLFWN 214 (470)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~i~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (470)
..+.........++.++.......|.|...+++.+...+..+..+........+.+.......+ .+.++........-.
T Consensus 106 ~~~~~~~~~~~~i~~~l~~~~~~~G~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~~ 184 (386)
T TIGR02358 106 LFGEESPMLWILIVGILVTLWLLSGPLAFVWLNNWSVWLLLIATLWLLVVVFSKADLSELWNRA-GDMSFAVAVELVIAM 184 (386)
T ss_pred hcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhcCCC-CCccHHHHHHHHHHH
Confidence 2111112223333344566677889999999999887776666655554444443322111111 113333222221111
Q ss_pred -hhhHHHhhhhhccccCCCCchhHHHHHHHHHHHHHHHHHHHHH
Q 012131 215 -LNYWDSISTLVGEVEDPGKTLPRALFYALILVVFAYFFPLLIG 257 (470)
Q Consensus 215 -~~G~e~~~~~~~E~k~P~k~ip~ai~~~~~~~~~~y~l~~~~~ 257 (470)
..+....+.++...|+|+| .-++...+..+...+..+.....
T Consensus 185 ~~swa~~~~DysRy~k~~~~-~~~~~~~G~~i~~~~~~~~G~~~ 227 (386)
T TIGR02358 185 PLSWLPLIADYTRFARNPRH-VFLGTVLGYFIGSCWMYFLGLAV 227 (386)
T ss_pred HHHHHHHccchhhhcCCCcc-eehHHHHHHHHHHHHHHHHHHHH
Confidence 1222346777777887644 45666666665555444444433
|
On the basis of a phylogenomic study of thiamine biosythetic, salvage, and transporter genes and a highly conserved RNA element THI, this protein family has been identified as a probable transporter of hydroxymethylpyrimidine (HMP), the phosphorylated (by ThiD) form of which gets joined (by ThiE) to hydroxyethylthiazole phosphate to make thiamine phosphate. |
| >TIGR00813 sss transporter, SSS family | Back alignment and domain information |
|---|
Probab=98.31 E-value=0.0029 Score=63.31 Aligned_cols=280 Identities=12% Similarity=0.049 Sum_probs=139.8
Q ss_pred ccccchhhHHHhHhhhhcc--cccchhhHHhhhChHHHHHHHHHHHHHHHHHHHHHHHHhhccCccCCchhHhHHHhhCC
Q 012131 22 FQKVSVIPLVFLIFYEVSG--GPFGVEDSVMAAGPLLALIGFLFFPFIWSIPEALITAEMGTMFPENGGYVVWVASALGP 99 (470)
Q Consensus 22 ~r~l~~~~~~~~~~~~v~g--g~~~~~~~~~~~g~~~~~~~~ii~~~~~~~~~al~~~el~~~~p~~GG~y~~~~~~~g~ 99 (470)
.|+++++...+...++..+ ...+.+......|.... .+.++.....+..+..+.+.-++.+ .-..++|.++-||+
T Consensus 2 gr~~~~~~~~~s~~at~~s~~t~ig~~~~~y~~G~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-~~T~~e~l~~Ryg~ 78 (407)
T TIGR00813 2 GRSLGGWVVAASLFASYISASQFLGLPGAIYAYGFAIG--FYELGALVLLIILGWLFVPIFINNG-AYTMPEYLEKRFGK 78 (407)
T ss_pred CCCCCcHHHHHHHHHHHhhHHHHhcCcHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHcC-CCchhHHHHHHhCc
Confidence 4788888888877776544 44555665555553221 1111111112333455555555433 45788899999998
Q ss_pred -hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 012131 100 -HWGFQQGWMKWLSGVIDNALYPVLFLDYLKSAIPALEGGFPRIVAVLLLTTALTYMNYRGLTIVGWVAIVLGVFSLVPF 178 (470)
Q Consensus 100 -~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~i~~~~~i~~~ 178 (470)
....+.+....+..+...+......+..++..++. + .+....+...+...+...-|.|...+...+=.++.++..
T Consensus 79 ~~~~~~~~~~~i~~~~~~~~~q~~g~~~il~~~~gi---~-~~~~~ii~~~i~~~Yt~~GG~~av~~Td~iQ~~i~~~~~ 154 (407)
T TIGR00813 79 RILRGLSVLSLILYIFLYMSVDLFSGALLIELITGL---D-LYLSLLLLGAITILYTVFGGLKAVVWTDTIQAVIMILGT 154 (407)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc---h-HHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHH
Confidence 46667777777777777777878877777776642 1 222222233334455556677777766555444443333
Q ss_pred HHHHHHHhhcc-------------CC-----Ccccccccc----ccchHHHHHHHHh--hhhhHHH-hhhhhccccCCCC
Q 012131 179 ALMGLIAIPRL-------------KP-----WRWCMVDLK----NVNWGLYLNTLFW--NLNYWDS-ISTLVGEVEDPGK 233 (470)
Q Consensus 179 ~~~~i~~~~~~-------------~~-----~~~~~~~~~----~~~~~~~~~~~~~--~~~G~e~-~~~~~~E~k~P~k 233 (470)
+++.+..+.+. ++ .+......+ ...|.-...+... ...+.+. ..+-.=-.|| +|
T Consensus 155 i~~~~~~~~~~GG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~qR~~a~ks-~~ 233 (407)
T TIGR00813 155 FILPVFAFSEVGGLGTFVEKASQAAPTNPSPDDLYDFFRDPSTSDLPWGAGVFGLPHVALWYWTNQVIVQRCLAAKS-AK 233 (407)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHhcCCCccchhhhccCCCCCcccCCChHHHHhChHHHHHHHhcCHHHhhHHHhcCC-HH
Confidence 33333222111 11 000000000 0111110000000 0000000 0111112355 47
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHH---HhccCC--Ccc-----cccccHHHHHHHHhcchhHHHHHHHHHHHHhHHHHHH
Q 012131 234 TLPRALFYALILVVFAYFFPLLIG---TGAAPV--HRE-----LWSDGYFSVIAKLIGGVWLRTWIQGASAVSNMGMFIA 303 (470)
Q Consensus 234 ~ip~ai~~~~~~~~~~y~l~~~~~---~~~~~~--~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (470)
+..|+..++.....+++.+..+.- ....+. .+. .+.+..+..+.++..++++..++.+..+.+..++..+
T Consensus 234 ~~r~~~~~~~~~~~~~~~~~~l~G~~a~~~~~~~~p~~~~~~~~~~~~~~p~~~~~~lp~~l~gl~~agilaA~mST~~s 313 (407)
T TIGR00813 234 HAKKGCLISGVLKLLPMFGAVLPGLIARALYTDIDPALAGAVNQNSDQAYPLLVQELMPPGLAGLFLAAILAAVMSTLSS 313 (407)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcccChhhhcccCCChhhHHHHHHHHHcCcchHHHHHHHHHHHHHHhhhh
Confidence 788888888766655554433221 111221 111 1334456666777777877777777766666666666
Q ss_pred Hhhhhh
Q 012131 304 EMSSDS 309 (470)
Q Consensus 304 ~~~~~s 309 (470)
.+.+.+
T Consensus 314 ~l~a~s 319 (407)
T TIGR00813 314 QLNSAS 319 (407)
T ss_pred hHHHHH
Confidence 555443
|
have different numbers of TMSs. A 13 TMS topology with a periplasmic N-terminus and a cytoplasmic C-terminus has been experimentally determined for the proline:Na+ symporter, PutP, of E. coli. |
| >COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.22 E-value=0.004 Score=63.67 Aligned_cols=112 Identities=13% Similarity=-0.072 Sum_probs=76.2
Q ss_pred ccccccchhhHHHhHhhh--hcc-cccchhhHHhhhChHHHHHHHH--HHHHHHHHHHHHHHHHhhccCccCCchhHhHH
Q 012131 20 ERFQKVSVIPLVFLIFYE--VSG-GPFGVEDSVMAAGPLLALIGFL--FFPFIWSIPEALITAEMGTMFPENGGYVVWVA 94 (470)
Q Consensus 20 ~~~r~l~~~~~~~~~~~~--v~g-g~~~~~~~~~~~g~~~~~~~~i--i~~~~~~~~~al~~~el~~~~p~~GG~y~~~~ 94 (470)
.-.|+++.+ ..+++.+. +.| ..++.|......|.....+..- ++........+--..+++ +.++.=..++|.+
T Consensus 35 ~~gR~lg~~-v~~ls~~as~~s~~t~lG~~g~ay~~G~~~~~~~~~~~~~~~~~~~~~~~rl~~~~-~~~~~~T~~d~l~ 112 (493)
T COG0591 35 LGGRSLGPF-VYALSAAASDTSGWTFLGLPGLAYASGLSGLWIAIGLLIGAFLLWLLFAPRLRRLA-KARGATTIPDFLE 112 (493)
T ss_pred ccCCcCChH-HHHHHHHHHHHHHHHHhcchHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cccCCccHHHHHH
Confidence 357889998 66666554 333 3566777777766543322222 222222333344456666 5566678999999
Q ss_pred HhhC-ChHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Q 012131 95 SALG-PHWGFQQGWMKWLSGVIDNALYPVLFLDYLKSAIP 133 (470)
Q Consensus 95 ~~~g-~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (470)
+-|| +....+.+....+..+...+....+.+..++..++
T Consensus 113 ~Rf~s~~lr~l~ali~iv~~i~yia~ql~~~~~~~~~~~g 152 (493)
T COG0591 113 ARFGSKILRILSALIIIVFFIPYIALQLVAGGLLLSLLFG 152 (493)
T ss_pred HHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC
Confidence 9999 88899999999999999898888888887766665
|
|
| >COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.15 E-value=0.0089 Score=57.70 Aligned_cols=325 Identities=12% Similarity=0.035 Sum_probs=165.1
Q ss_pred cchhhHHhh-hC--hHHHHHHHHHHHHHHHHHHHHHHHHhhccCccCCchhHhHHHhhCChHHHHHHHHHHHHHhhhHHH
Q 012131 43 FGVEDSVMA-AG--PLLALIGFLFFPFIWSIPEALITAEMGTMFPENGGYVVWVASALGPHWGFQQGWMKWLSGVIDNAL 119 (470)
Q Consensus 43 ~~~~~~~~~-~g--~~~~~~~~ii~~~~~~~~~al~~~el~~~~p~~GG~y~~~~~~~g~~~g~~~g~~~~~~~~~~~~~ 119 (470)
.-.|+.++. +| ...+.+++++.++. +|..- -++- -.+||.|.=..+-.||..|.+..-..++.--...+.
T Consensus 24 lIFPP~LG~~aG~~~~~A~lGFllTgVg--lPlLg---iIa~--a~~g~~~~~l~~~i~~~fg~~f~~~iyLsIGPffAi 96 (431)
T COG1114 24 LIFPPMLGLHAGEHVWPAILGFLLTGVG--LPLLG---IIAV--ALYGGGVESLATRIGPWFGVLFAIAIYLSIGPFFAI 96 (431)
T ss_pred ccCChhhhhhcCccHHHHHHHHHHHHhh--HHHHH---HHHh--hccCCCHHHHhhhccchHHHHHHHHHHHHhcccccC
Confidence 335666654 44 34577889988874 33111 1111 234555666666778888877765544432211111
Q ss_pred ---HHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcc--
Q 012131 120 ---YPVLFLDYLKSAIPALEGGFPRIVAVLLLTTALTYMNYRGLTIVGWVAIVLGVFSLVPFALMGLIAIPRLKPWRW-- 194 (470)
Q Consensus 120 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~i~~~~~i~~~~~~~i~~~~~~~~~~~-- 194 (470)
.+..+...+....++ .+.....+..+++..+..++.+...|...|+-.+++-+.++.++++.+..+...+.+.-
T Consensus 97 PRt~~vsfe~~i~p~~~~-~~~~~l~ifs~ifF~ia~~~sl~psklid~vGk~LTPilLv~l~il~i~~~~~p~g~~~~a 175 (431)
T COG1114 97 PRTGAVSFEVGISPLLGD-SSLPSLFIFSVIFFAIAYLFSLNPSKLIDRVGKFLTPILLVLLLILVIAAIIPPAGPISAA 175 (431)
T ss_pred CcccchhHHHhhhcccCC-CcchHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCCcccc
Confidence 111111111111221 13344566777777788888888888888888888877776666666654432222111
Q ss_pred ----ccccc-----cccchHHHHHHHHhhhhhHHHhhhhhccccCCCCchhHHHHHHHHHHHHHHHHHHHH--HHhccCC
Q 012131 195 ----CMVDL-----KNVNWGLYLNTLFWNLNYWDSISTLVGEVEDPGKTLPRALFYALILVVFAYFFPLLI--GTGAAPV 263 (470)
Q Consensus 195 ----~~~~~-----~~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~P~k~ip~ai~~~~~~~~~~y~l~~~~--~~~~~~~ 263 (470)
.+.+. +.......+++ .+|...-..+.-..-.+++ |+..|-...+-.+..+...+.-.. ..+....
T Consensus 176 ~~~y~~~pf~~GfleGY~TMDaLAa--l~FgivIv~alk~~g~~~~-~~~~~~~~~aglIa~i~La~iY~~L~ylGa~s~ 252 (431)
T COG1114 176 SGAYQSQPFSKGFLEGYLTMDALAA--LAFGIVIVNALKSKGVTTK-KQIIKYTIKAGLIAAILLALIYLSLFYLGATSA 252 (431)
T ss_pred cHHHHhChHHHHHhcchHHHHHHHH--HHHHHHHHHHHHHhccCcH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhccchH
Confidence 11110 01111122333 3333322222222223333 344555544444433333332222 2232222
Q ss_pred Ccc---cccccHHHHHHHHhcchhHHHHHHHHHHHHhHHHHHHHhhhhhHHHHhhhhcCCCchhhhhcCCCCCCh-HHHH
Q 012131 264 HRE---LWSDGYFSVIAKLIGGVWLRTWIQGASAVSNMGMFIAEMSSDSFQLLGMAERGMLPEIFARRSQYGTPL-VGIL 339 (470)
Q Consensus 264 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~~~~~~~r~~~P~-~ai~ 339 (470)
+.. ++...-+.+..+...|+.+..+..+.+.++++++..+...+++... .|+-+ +.-+ ..+.
T Consensus 253 ~~~~~~~nG~~IL~~~s~~~fG~~G~~lL~~iv~lACLTTaiGLi~a~aefF-------------~~~~p-~~SY~~~v~ 318 (431)
T COG1114 253 SAAGLAANGGQILSAYSQHLFGSYGSILLGLIVFLACLTTAVGLIVACAEFF-------------SKLVP-KLSYKTWVI 318 (431)
T ss_pred hhcccccchHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHhcc-cccHHHHHH
Confidence 221 1223345666677788888999999999999998888777666543 33222 1112 2344
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH--HHHHHHHHhhCCCCCCCcccC
Q 012131 340 FSASGVILLSWLSFQEIVAAENFLYCFAMIME--FIAFVKLRMQYPEAIRPYKVP 392 (470)
Q Consensus 340 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 392 (470)
+..+++.++.-...+.++..+.=.....|=.. .++....+|..+..++.|+..
T Consensus 319 if~i~sflvan~GL~~Ii~isvPvL~~iYPiaI~Lv~l~~~~k~~~~~~~~y~~~ 373 (431)
T COG1114 319 IFTLISFLVANLGLEQIIKISVPVLTAIYPIAIALVLLSFARKLWKNSKRVYRLT 373 (431)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCcchhHHHH
Confidence 45556666666677887776665555555332 234444444445445555543
|
|
| >PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2 | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.006 Score=59.85 Aligned_cols=110 Identities=15% Similarity=0.099 Sum_probs=67.4
Q ss_pred HHHHHHHHHHhhccCcc-C-CchhHhHHHhhCChHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccccCCchHHHHHHH
Q 012131 69 SIPEALITAEMGTMFPE-N-GGYVVWVASALGPHWGFQQGWMKWLSGVIDNALYPVLFLDYLKSAIPALEGGFPRIVAVL 146 (470)
Q Consensus 69 ~~~~al~~~el~~~~p~-~-GG~y~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (470)
+.+..+.+-|++.|+-. + -+...-.++.+||.+++.......+...........+.+..++.+++ .+......
T Consensus 22 ~~~~~~~~q~~~~R~~~~Tg~~l~~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~g~a~al~ll~g-----~~~~~~~~ 96 (358)
T PF01566_consen 22 SNLLKYVFQEMAARLGIVTGKGLAEGIRERFGRGWAWFLWILIFLANIATQAAEIIGIAIALNLLFG-----IPLWIWVL 96 (358)
T ss_pred HHHHHHHHHHHHHHHhhhcCCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-----CCcHHHHH
Confidence 34447777888888774 3 36666668889999999998888888887777777777766665552 12233333
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 012131 147 LLTTALTYMNYRGLTIVGWVAIVLGVFSLVPFALMGL 183 (470)
Q Consensus 147 ~~~~~~~~~n~~g~~~~~~~~~i~~~~~i~~~~~~~i 183 (470)
+..+....+-+...+..++++.+...+..+..+.+.+
T Consensus 97 ~~~~~~~~ll~~~~~~y~~~E~~~~~lv~~m~l~f~~ 133 (358)
T PF01566_consen 97 LVAVIAILLLWLSSGGYRRLERILKVLVAVMVLAFLI 133 (358)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHH
Confidence 3333333333322444666666666655554333333
|
The NRAMP family is a novel family of functionally related proteins defined by a conserved hydrophobic core of ten transmembrane domains []. Nramp1 is an integral membrane protein expressed exclusively in cells of the immune system and is recruited to the membrane of a phagosome upon phagocytosis. Nramp2 is a multiple divalent cation transporter for Fe2+, Mn2+ and Zn2+ amongst others. It is expressed at high levels in the intestine; and is major transferrin-independent iron uptake system in mammals []. The yeast proteins Smf1 and Smf2 may also transport divalent cations []. The natural resistance of mice to infection with intracellular parasites is controlled by the Bcg locus, which modulates the cytostatic/cytocidal activity of phagocytes. Nramp1, the gene responsible, is expressed exclusively in macrophages and poly-morphonuclear leukocytes, and encodes a polypeptide (natural resistance-associated macrophage protein) with features typical of integral membrane proteins. Other transporter proteins from a variety of sources also belong to this family.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane |
| >PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.013 Score=57.88 Aligned_cols=321 Identities=11% Similarity=0.087 Sum_probs=160.2
Q ss_pred cchhhHHhh-hCh--HHHHHHHHHHHHHHHHHHHHHHHHhhccCccCCchhHhHHHhhCChHHHHHHHHHHHH--HhhhH
Q 012131 43 FGVEDSVMA-AGP--LLALIGFLFFPFIWSIPEALITAEMGTMFPENGGYVVWVASALGPHWGFQQGWMKWLS--GVIDN 117 (470)
Q Consensus 43 ~~~~~~~~~-~g~--~~~~~~~ii~~~~~~~~~al~~~el~~~~p~~GG~y~~~~~~~g~~~g~~~g~~~~~~--~~~~~ 117 (470)
.-.|+.++. +|. ..+.++++++++..-+. +. ++-.. +||.+.=..+..||..|.+......+. -....
T Consensus 27 LIFPp~LG~~aG~~~~~a~~GF~iT~VglPlL-gi----iava~--~~g~~~~l~~rv~~~f~~~f~~~i~l~IGP~~ai 99 (439)
T PRK15433 27 IIFPPMVGLQAGEHVWTAAFGFLITAVGLPVL-TV----VALAK--VGGGVDSLSTPIGKVAGVLLATVCYLAVGPLFAT 99 (439)
T ss_pred hhccHHHHHHhcchHHHHHHHHHHHHHHHHHH-HH----HHHhh--cCCCHHHHhhhcchHHHHHHHHHHHHHHhhcccc
Confidence 335666654 443 34678888888742322 11 22222 234444445556777776665433332 11111
Q ss_pred HHHHHHHHH-HHHHhccccCCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcccc
Q 012131 118 ALYPVLFLD-YLKSAIPALEGGFPRIVAVLLLTTALTYMNYRGLTIVGWVAIVLGVFSLVPFALMGLIAIPRLKPWRWCM 196 (470)
Q Consensus 118 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~i~~~~~i~~~~~~~i~~~~~~~~~~~~~ 196 (470)
+=.+...-| .++.+++. . .....+..+++..+..++.+...|...++-.+++-+.++.++++++.++.+...+.-.+
T Consensus 100 PRtaavsfEm~i~p~~~~-~-~~~~~ifs~iFF~i~~~l~l~p~klvd~iGK~LTP~LL~~l~~lii~~i~~p~g~~~~~ 177 (439)
T PRK15433 100 PRTATVSFEVGIAPLTGD-S-ALPLFIYSLVYFAIVILVSLYPGKLLDTVGNFLAPLKIIALVILSVAAIVWPAGSISTA 177 (439)
T ss_pred CCccccchhheeeccCCc-c-cHHHHHHHHHHHHHHHHHHcChhhHHHHhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCc
Confidence 111111111 12333332 1 24556677777778888888888888888887777666666666655554321110000
Q ss_pred cc-c-cc---------cchHHHHHHHHhhhhhHHHhhhhhccccCCCCchhHHHHHH----HHHHHHHHHHHHHHHHhcc
Q 012131 197 VD-L-KN---------VNWGLYLNTLFWNLNYWDSISTLVGEVEDPGKTLPRALFYA----LILVVFAYFFPLLIGTGAA 261 (470)
Q Consensus 197 ~~-~-~~---------~~~~~~~~~~~~~~~G~e~~~~~~~E~k~P~k~ip~ai~~~----~~~~~~~y~l~~~~~~~~~ 261 (470)
.+ . ++ ......++++.|+..=.++. -....||+ |++.|....+ .....++|....+.-....
T Consensus 178 ~~~y~~~~f~~Gf~eGY~TMDalaal~Fg~iii~~i--~~~G~~~~-~~~~k~t~~ag~ia~~~L~~vY~gL~~lGa~s~ 254 (439)
T PRK15433 178 TEAYQNAAFSNGFVNGYLTMDTLGAMVFGIVIVNAA--RSRGVTEA-RLLTRYTVWAGLMAGVGLTLLYLALFRLGSDSA 254 (439)
T ss_pred chhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHH--HHcCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 00 0 00 01112233333332222222 23345554 3444544443 3344445554443322211
Q ss_pred C-CCcccccccHHHHHHHHhcchhHHHHHHHHHHHHhHHHHHHHhhhhhHHHHhhhhcCCCchhhhhcCCCCCCh-HHHH
Q 012131 262 P-VHRELWSDGYFSVIAKLIGGVWLRTWIQGASAVSNMGMFIAEMSSDSFQLLGMAERGMLPEIFARRSQYGTPL-VGIL 339 (470)
Q Consensus 262 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~~~~~~~r~~~P~-~ai~ 339 (470)
+ .++.++...-+....+...|+++..++.+.+.++++++..+...+.++...+.- + .|+ ..+.
T Consensus 255 ~~~~~~~~g~~il~~~~~~~~G~~G~~ll~iiv~lACLTTaIGLi~a~a~~f~~~~-------------~--isY~~~v~ 319 (439)
T PRK15433 255 SLVDQSANGAAILHAYVQHTFGGGGSFLLAALIFIACLVTAVGLTCACAEFFAQYV-------------P--LSYRTLVF 319 (439)
T ss_pred ccccCCCcHhHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-------------C--CcHHHHHH
Confidence 1 111112223344555667789999999999999999999988887777543321 1 333 2345
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHH----HHHHHHHHHHHhhCCCCCCCcccC
Q 012131 340 FSASGVILLSWLSFQEIVAAENFLYCFAM----IMEFIAFVKLRMQYPEAIRPYKVP 392 (470)
Q Consensus 340 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 392 (470)
+..+++.+++...++.++....=...+.| .+..+.++ ++..++.++.||..
T Consensus 320 i~~l~S~~lSn~G~~~II~~s~PiL~~iYP~~IvLill~l~--~~~~~~~~~~y~~~ 374 (439)
T PRK15433 320 ILGGFSMVVSNLGLSQLIQISVPVLTAIYPPCIALVVLSFT--RSWWHNSSRVIAPP 374 (439)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHH--HHHhCCCCceehHH
Confidence 55666677777777777765554444443 33333333 33333334556643
|
|
| >PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines | Back alignment and domain information |
|---|
Probab=98.08 E-value=2.3e-05 Score=79.33 Aligned_cols=164 Identities=20% Similarity=0.156 Sum_probs=89.9
Q ss_pred cccccccchhhHHHhHhhhhcc-cccchhhHHhh--hChHHHHHHHHHHHHHHHHHHHHHHHHhhccCccCC-chhHhHH
Q 012131 19 LERFQKVSVIPLVFLIFYEVSG-GPFGVEDSVMA--AGPLLALIGFLFFPFIWSIPEALITAEMGTMFPENG-GYVVWVA 94 (470)
Q Consensus 19 ~~~~r~l~~~~~~~~~~~~v~g-g~~~~~~~~~~--~g~~~~~~~~ii~~~~~~~~~al~~~el~~~~p~~G-G~y~~~~ 94 (470)
++++|+-++++...+=++.... ..+........ -+....+++.+++.++.+++.++ ++..-|+.| ......+
T Consensus 3 P~~~R~~~~~~~~~iW~~~~~~~~~~~~G~~~~~~gL~~~~ailai~~G~~l~~i~~~~----~~~~G~r~Gl~~~v~sR 78 (440)
T PF02133_consen 3 PESERTWSPWSLFWIWFGANISIATFVTGALGVALGLSFWQAILAILIGNLLGAILVAL----MGIIGPRTGLPTMVLSR 78 (440)
T ss_dssp --GG--B-HHHHHHHHCHHH-SCHHH-HHHHHHCCCS-HHHHHHHHHHHHHHHHHHHHH----HTHHHHCC---HHHHTT
T ss_pred chhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHHH----hcccccccCCCchhcch
Confidence 3467777888887776655333 22223333222 23344566666666554444444 555556655 4455666
Q ss_pred HhhCChHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccccCC------------chHHHHHHHHHHHHHHHHHhhhhHH
Q 012131 95 SALGPHWGFQQGWMKWLSGVIDNALYPVLFLDYLKSAIPALEG------------GFPRIVAVLLLTTALTYMNYRGLTI 162 (470)
Q Consensus 95 ~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~n~~g~~~ 162 (470)
..||.+-..+......+..+...+......++.+....+...+ .....+..++.-++.....+.|.+.
T Consensus 79 ~~FG~~Gs~l~~~l~~i~~igW~av~~~~~g~al~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~ 158 (440)
T PF02133_consen 79 ASFGYRGSKLPSLLRAISAIGWFAVNTWLGGQALAALLGIIFGSFLWIGNAIIGIALPLWVCFFIFWLIQTLFAIYGMKA 158 (440)
T ss_dssp TTS-TTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----HH-----------HHHHHHHHHHHHHHCTHHHH
T ss_pred hccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcchhhhhhhhcchhhHHHHHHHHHHHHHHHHhcCHHH
Confidence 7799888888888888888877787777777777776554311 1222233333444566667788888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 012131 163 VGWVAIVLGVFSLVPFALMGLIAI 186 (470)
Q Consensus 163 ~~~~~~i~~~~~i~~~~~~~i~~~ 186 (470)
..+++.+...+..+..+.......
T Consensus 159 l~~~~~~~~~~~~~~~~~~~~~~~ 182 (440)
T PF02133_consen 159 LRRLAVIAAPILLVVFIGMLIWAL 182 (440)
T ss_dssp HHHHHHCCHHHHHHHHHHHHHHHH
T ss_pred HHhHHhhhhHHHHhhhhheeEEEe
Confidence 888887766554444334433333
|
Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.; GO: 0015205 nucleobase transmembrane transporter activity, 0015851 nucleobase transport, 0016020 membrane; PDB: 2JLN_A 2JLO_A. |
| >PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.0016 Score=65.17 Aligned_cols=284 Identities=12% Similarity=0.015 Sum_probs=125.3
Q ss_pred ccccchhhHHHhHhhhhcc--cccchhhHHhhhChHHH--HHHHHHHHHHHHHHHHHHHHHhhccCccCCchhHhHHHhh
Q 012131 22 FQKVSVIPLVFLIFYEVSG--GPFGVEDSVMAAGPLLA--LIGFLFFPFIWSIPEALITAEMGTMFPENGGYVVWVASAL 97 (470)
Q Consensus 22 ~r~l~~~~~~~~~~~~v~g--g~~~~~~~~~~~g~~~~--~~~~ii~~~~~~~~~al~~~el~~~~p~~GG~y~~~~~~~ 97 (470)
.|+++++...+..+++..| .+.+.+......|.... .+++.++.. ..++.++.--++. +.-..++|.++-+
T Consensus 5 gr~~~~~~~~~s~~at~~s~~t~~G~~g~~y~~G~~~~~~~~~~~~~~~----~~~~~~~~~~r~~-~~~T~~e~~~~Ry 79 (406)
T PF00474_consen 5 GRSLGWWVVAFSLVATWISAWTFIGFPGFAYSYGISGLWYAIGYAIGFL----LFALFFAPRLRRS-GAVTIPEYLEKRY 79 (406)
T ss_dssp -S---HHHHHHHHHHHHSSHHHHTHHHHHHHHT-GGGGHHHHHHHHHHH----HHHHHTHHHHHHT-T--SHHHHHHHHT
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcceeeeccccchhHH----HHHHHHHHhhccc-chhhhhhhhhhhc
Confidence 5788888777777776555 35556666665554322 222222221 1122223322222 2347888999999
Q ss_pred CChH--HHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 012131 98 GPHW--GFQQGWMKWLSGVIDNALYPVLFLDYLKSAIPALEGGFPRIVAVLLLTTALTYMNYRGLTIVGWVAIVLGVFSL 175 (470)
Q Consensus 98 g~~~--g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~i~~~~~i 175 (470)
|+.. ..+......+..+..........+..++..++. + ......+...+......+-|.|...+...+-.++.+
T Consensus 80 g~~~~~~~~~~i~~i~~~~~~~~~q~~~~~~~~~~~~gi---~-~~~~~~i~~~i~~iYt~~GGl~av~~td~iQ~~i~~ 155 (406)
T PF00474_consen 80 GSKALLRILAAIIIIVFMIPYLAAQLVGGGALLSVLFGI---P-YNTAILIVGVIVIIYTFFGGLRAVAWTDFIQGVIMI 155 (406)
T ss_dssp -HHH-HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT------HHHHHHHHHHHHHHTTCTT------SHHHHHHHHHH
T ss_pred CCchhhhhhcccccchhhhhhhhccccccccchhhccch---h-hhHHHHHHHHHHHHhhhhhhHhhhhHHHHHHHHHHH
Confidence 9877 666655566666677777777777777776642 1 122222233344445555677776655544444433
Q ss_pred HHHHHHHHHHhhc-------------cCCCcccccccccc----chHHHHHHHHhhhhhHHHhhhhhc---cccCCCCch
Q 012131 176 VPFALMGLIAIPR-------------LKPWRWCMVDLKNV----NWGLYLNTLFWNLNYWDSISTLVG---EVEDPGKTL 235 (470)
Q Consensus 176 ~~~~~~~i~~~~~-------------~~~~~~~~~~~~~~----~~~~~~~~~~~~~~G~e~~~~~~~---E~k~P~k~i 235 (470)
+..+++.+..+.+ .+++.....++.+. +........+....|....++... -.|| +|+.
T Consensus 156 ~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~p~~~qR~~aak~-~~~a 234 (406)
T PF00474_consen 156 IGAIVVLIFVLSAVGGFGGLFQNLSAAHPNFLDLFNPGGFSMFSSPLFFLSFWIALMLGTFGAPHFWQRFLAAKS-PKTA 234 (406)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHHH-GGGG-SS--SS-----SSGGGGS-TTHHHHSTHHH-HHHHHHHSSSH-HHHH
T ss_pred HHHHHhhhccchhcCCchhhHHHHhhcCcccccccCCCCcccccchhhhHHHHHHHHhhhccchHHHHHHHhcCC-HHHH
Confidence 3333333322211 11111000111110 001110000011112222233222 2344 3667
Q ss_pred hHHHHHHHHHHHHHHHHH------HHHHHhccCC---CcccccccHHHHHHHHhcchhHHHHHHHHHHHHhHHHHHHHhh
Q 012131 236 PRALFYALILVVFAYFFP------LLIGTGAAPV---HRELWSDGYFSVIAKLIGGVWLRTWIQGASAVSNMGMFIAEMS 306 (470)
Q Consensus 236 p~ai~~~~~~~~~~y~l~------~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (470)
.|+...+.....+++... ........|. ++....+..+..+.++..+++...++.+..+.+..++..+.+.
T Consensus 235 r~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~gl~~~~~~aA~~ST~~s~l~ 314 (406)
T PF00474_consen 235 RKGMLIAIIFLIIFYFLTIFIGLIAIALFGLYPDAAGPSLGDPDLAFPYLAAQYLPPGLAGLFLAGILAAIMSTADSLLL 314 (406)
T ss_dssp HHHHHHHHGGGTTHHHHHHHHHHHH-HHHHHH-TT--S-SSSGGGHHHHHHT-TS-TTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHhhhheeeehHHhhhhhhhhcccccccccccccccCCcccchhhhhhhccchhHHHHHHHHHHhhhHHHHHHHh
Confidence 788777654433333331 1111222221 1223344566677777777887777777766677777777666
Q ss_pred hhhHHHHhhhhc
Q 012131 307 SDSFQLLGMAER 318 (470)
Q Consensus 307 ~~sR~l~~~a~d 318 (470)
+.+=. ++||
T Consensus 315 a~ss~---~~~D 323 (406)
T PF00474_consen 315 AISSI---FSRD 323 (406)
T ss_dssp HHHHH---HHHH
T ss_pred hhhhh---hhHH
Confidence 55443 3566
|
Thereby the energy stored in an inwardly directed electrochemical sodium gradient (sodium motive force, SMF) is used to drive solute accumulation against a concentration gradient. The SMF is generated by primary sodium pumps (e.g. sodium/potassium ATPases, sodium translocating respiratory chain complexes) or via the action of sodium/proton antiporters. Sodium/substrate transporters are grouped in different families based on sequence similarities [, ]. One of these families, known as the sodium:solute symporter family (SSSF), contains over a hundred members of pro- and eukaryotic origin []. The average hydropathy plot for SSSF proteins predicts 11 to 15 putative transmembrane domains (TMs) in alpha-helical conformation. A secondary structure model of PutP from Escherichia coli suggests the protein contains 13 TMs with the N terminus located on the periplasmic side of the membrane and the C terminus facing the cytoplasm. The results support the idea of a common topological motif for members of the SSSF. Transporters with a C-terminal extension are proposed to have an additional 14th TM. An ordered binding model of sodium/substrate transport suggests that sodium binds to the empty transporter first, thereby inducing a conformational alteration which increases the affinity of the transporter for the solute. The formation of the ternary complex induces another structural change that exposes sodium and substrate to the other site of the membrane. Substrate and sodium are released and the empty transporter re-orientates in the membrane allowing the cycle to start again.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3DH4_D 2XQ2_A. |
| >COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.023 Score=56.14 Aligned_cols=65 Identities=15% Similarity=0.056 Sum_probs=45.8
Q ss_pred HHHHHHHHHHhhccCcc-CC-chhHhHHHhhCChHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Q 012131 69 SIPEALITAEMGTMFPE-NG-GYVVWVASALGPHWGFQQGWMKWLSGVIDNALYPVLFLDYLKSAIP 133 (470)
Q Consensus 69 ~~~~al~~~el~~~~p~-~G-G~y~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (470)
..+.++..-|++.+.-. +| |--.=.++.++|.+++.......+....+.-++..+.+-.++.++.
T Consensus 57 s~l~~~~~Q~~~arLgivTG~~laq~ir~~y~~~~~~~~~~~~~i~~~at~iae~~G~aial~ll~~ 123 (416)
T COG1914 57 SNLMAYILQELSARLGIVTGKGLAEAIRERYLPGLGILLWILAEIAGIATDIAEVAGIAIALNLLFG 123 (416)
T ss_pred HHHHHHHHHHHHHHHHHHhCCcHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 33445556666666543 33 4556677779999999888887778887777788887777777664
|
|
| >COG0733 Na+-dependent transporters of the SNF family [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.025 Score=55.53 Aligned_cols=274 Identities=14% Similarity=0.095 Sum_probs=136.0
Q ss_pred chhhHHHhHhhhhcc--cccchhhHHhhhChHHHHHHHHHHHHHHHHHHHHHHHHhh--ccCccC-CchhHhHHHhhCCh
Q 012131 26 SVIPLVFLIFYEVSG--GPFGVEDSVMAAGPLLALIGFLFFPFIWSIPEALITAEMG--TMFPEN-GGYVVWVASALGPH 100 (470)
Q Consensus 26 ~~~~~~~~~~~~v~g--g~~~~~~~~~~~g~~~~~~~~ii~~~~~~~~~al~~~el~--~~~p~~-GG~y~~~~~~~g~~ 100 (470)
|-.+...-..|+-+| -+--.|+...+.|+...++-|++..+...+|.-+ .|++ ++...+ -+.|.-... ++
T Consensus 10 SrlGFILAa~GsAVGLGNiWrFPy~~~~nGGgAFll~yli~~l~~GiPlli--~Ef~iGr~~~~~~~~a~~~l~~---~~ 84 (439)
T COG0733 10 SRLGFILAAAGSAVGLGNIWRFPYMAGENGGGAFLLPYLIFLLLVGIPLLL--AEFAIGRRGRKNAVGAFRKLAP---KK 84 (439)
T ss_pred hHHHHHHHHHHHHhcccccccCCeEeeecCcchHHHHHHHHHHHHhHHHHH--HHHHhhhhcCCChhHHHHHhcc---Cc
Confidence 444555556666555 4777899888866667888888888766877665 6654 444432 233333322 23
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHH------------------hcccc-CCchHHHHHHHHHHHHHHHHHhhhhH
Q 012131 101 WGFQQGWMKWLSGVIDNALYPVLFLDYLKS------------------AIPAL-EGGFPRIVAVLLLTTALTYMNYRGLT 161 (470)
Q Consensus 101 ~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~-~~~~~~~~~~~~~~~~~~~~n~~g~~ 161 (470)
.....||.-........+-|....+..+.+ .+... .+++.....-..+.++..++..+|++
T Consensus 85 ~~~~~G~~gv~~~~~i~sfYsvI~GWil~Y~~~s~tg~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~lt~~iv~~GV~ 164 (439)
T COG0733 85 KWEWIGWFGVLGGFLILSFYSVIGGWILSYLVKSLTGALPDTGEQFAQLFGQTISNPGLAVIFHLLFLVLTALIVSRGVK 164 (439)
T ss_pred cchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCChhHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHhHH
Confidence 333333332222222223232222222211 12111 12333344445566667777778877
Q ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHhhccCC---------CccccccccccchHHHHHHHHhhhh-hHHHhhhhhccccC
Q 012131 162 I-VGWVAIVLGVFSLVPFALMGLIAIPRLKP---------WRWCMVDLKNVNWGLYLNTLFWNLN-YWDSISTLVGEVED 230 (470)
Q Consensus 162 ~-~~~~~~i~~~~~i~~~~~~~i~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~-G~e~~~~~~~E~k~ 230 (470)
. .-|.+.++--.-.+.++++.+..+...+. .+++... ++..|...+...+|+.+ |+.....++.-.++
T Consensus 165 ~GIEk~~kimMP~Lfvl~i~Lvi~~~tLpGA~~G~~f~l~PD~s~l~-~~~v~~~AlGQ~FFsLSlG~g~mitYsSYL~k 243 (439)
T COG0733 165 KGIEKANKIMMPLLFVLFIILVIRAVTLPGAMEGLKFLFKPDFSKLT-DPKVWLAALGQAFFSLSLGFGIMITYSSYLSK 243 (439)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHcCccHHHHHHHHhcCCHHHcC-chhhHHHHHHHHHHHHHHHHHHHHHHHhhcCc
Confidence 6 56777766555444454554443321111 1111111 13445556666666654 66666566665554
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHH---hccCCCcccccc---cHHHHHHHHhc-chhHHHHHHHHHHHHhHHHHHH
Q 012131 231 PGKTLPRALFYALILVVFAYFFPLLIGT---GAAPVHRELWSD---GYFSVIAKLIG-GVWLRTWIQGASAVSNMGMFIA 303 (470)
Q Consensus 231 P~k~ip~ai~~~~~~~~~~y~l~~~~~~---~~~~~~~~~~~~---~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 303 (470)
+.|+++.-......-..+-++..+++. ...+.+.....+ ..+..++++.+ |..+..++.....++.++|..+
T Consensus 244 -~~~l~~sa~~v~~~n~~~s~lAGl~Ifpa~f~~g~~~~~GpgL~Fi~LP~if~~mp~G~~~~~lFFl~l~fAalTS~iS 322 (439)
T COG0733 244 -KSDLVSSALSIVLLNTLISLLAGLVIFPALFSFGADASQGPGLVFIVLPAVFNQMPLGTLFGILFFLLLLFAALTSAIS 322 (439)
T ss_pred -ccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCeeehhHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 677777665555443333333322222 222222111111 12445666663 4445555666666677777666
Q ss_pred Hhh
Q 012131 304 EMS 306 (470)
Q Consensus 304 ~~~ 306 (470)
.+-
T Consensus 323 mlE 325 (439)
T COG0733 323 MLE 325 (439)
T ss_pred HHH
Confidence 543
|
|
| >PRK12488 acetate permease; Provisional | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.053 Score=56.36 Aligned_cols=151 Identities=12% Similarity=0.019 Sum_probs=83.4
Q ss_pred cccccchhhHHHhHhhhhcc--cccchhhHHhhhChHHH--HHHHHHHHHHHHHHHHHHHHHhhccCccCCchhHhHHHh
Q 012131 21 RFQKVSVIPLVFLIFYEVSG--GPFGVEDSVMAAGPLLA--LIGFLFFPFIWSIPEALITAEMGTMFPENGGYVVWVASA 96 (470)
Q Consensus 21 ~~r~l~~~~~~~~~~~~v~g--g~~~~~~~~~~~g~~~~--~~~~ii~~~~~~~~~al~~~el~~~~p~~GG~y~~~~~~ 96 (470)
-.|++++|...+...++..+ ...+.+......|.... .+++.++.+ ..++.+++--++... =..++|.++-
T Consensus 65 aGR~l~~~~~~~si~at~~Sa~sflG~~G~~y~~G~~~~~~~~g~~~g~~----~~~~~~a~~lr~~g~-~T~~d~l~~R 139 (549)
T PRK12488 65 AGGGLTGMQNGLAIAGDMISAASFLGISAMMFMNGYDGLLYALGVLAGWP----IILFLIAERLRNLGK-YTFADVVSYR 139 (549)
T ss_pred eCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHH----HHHHHHHHHHHHCCC-cchHHHHHHH
Confidence 45899999888777776544 34455665555554321 122222211 112223333333322 3667777777
Q ss_pred hC-ChHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 012131 97 LG-PHWGFQQGWMKWLSGVIDNALYPVLFLDYLKSAIPALEGGFPRIVAVLLLTTALTYMNYRGLTIVGWVAIVLGVFSL 175 (470)
Q Consensus 97 ~g-~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~i~~~~~i 175 (470)
|| +....+.+....+.............+..++.+++. + .+..+.+..++...+...-|.|...+.+.+=.++.+
T Consensus 140 f~s~~~r~laai~~i~~~~~yl~~q~~g~g~il~~l~gi---~-~~~~iii~~~i~~~Yt~~GGm~av~~td~iQ~~im~ 215 (549)
T PRK12488 140 LAQGPVRLTAAFGTLTVVLMYLVAQMVGAGKLIELLFGI---S-YLYAVVIVGALMVLYVTFGGMLATTWVQIIKAVLLL 215 (549)
T ss_pred cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC---C-HHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHH
Confidence 87 568888887777766666666666666666666532 1 222222233344445556688887777665554444
Q ss_pred HHHHH
Q 012131 176 VPFAL 180 (470)
Q Consensus 176 ~~~~~ 180 (470)
+..++
T Consensus 216 ~~~i~ 220 (549)
T PRK12488 216 SGTSF 220 (549)
T ss_pred HHHHH
Confidence 44333
|
|
| >PRK00701 manganese transport protein MntH; Reviewed | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.054 Score=54.40 Aligned_cols=64 Identities=9% Similarity=-0.140 Sum_probs=45.5
Q ss_pred HHHHHHHHHHhhccCcc-CC-chhHhHHHhhCChHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Q 012131 69 SIPEALITAEMGTMFPE-NG-GYVVWVASALGPHWGFQQGWMKWLSGVIDNALYPVLFLDYLKSAI 132 (470)
Q Consensus 69 ~~~~al~~~el~~~~p~-~G-G~y~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (470)
+.+..+.+-|++.|.-. +| |.-.-.++.+|+.+++.......+....+...+..+.+.-++.++
T Consensus 74 s~~~~~~~Q~~~~RlgivTG~~l~~~ir~~~~~~~~~~~~~~~~l~~~~~~~~e~~G~a~al~ll~ 139 (439)
T PRK00701 74 SNLMAMLLQSLSAKLGIATGRDLAQACRDRYPRPVVWFLWIQAELAIMATDLAEVIGAAIALKLLF 139 (439)
T ss_pred HHHHHHHHHHHHhHhhhhcCCCHHHHHHHHCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44446667888888775 45 778888999999998887666666666666666666665555554
|
|
| >PF02705 K_trans: K+ potassium transporter; InterPro: IPR003855 This is a family of K+ potassium transporters that are conserved across phyla, having both bacterial (KUP) [], yeast (HAK) [], and plant (AtKT) [] sequences as members | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.017 Score=58.38 Aligned_cols=290 Identities=15% Similarity=0.140 Sum_probs=135.2
Q ss_pred HHHHHHhhccCcc--CCchhHhHHHhh-----CChHHHH-------HHHHHHHHHhhhHHHHHHHHHHHHHHhccccCCc
Q 012131 73 ALITAEMGTMFPE--NGGYVVWVASAL-----GPHWGFQ-------QGWMKWLSGVIDNALYPVLFLDYLKSAIPALEGG 138 (470)
Q Consensus 73 al~~~el~~~~p~--~GG~y~~~~~~~-----g~~~g~~-------~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (470)
.+=|.-+.-+..+ .||...--+-.. +++..+. -.-...-+.+.+.+.....+.|-+....|...+
T Consensus 52 ~iKYv~ivlradn~GEGGi~aL~sL~~~~~~~~~~~~~~l~~l~l~G~al~~gDgviTPAISVlSAvEGl~v~~p~~~~- 130 (534)
T PF02705_consen 52 TIKYVLIVLRADNNGEGGIFALYSLIRRFLKSSKRRRWLLLILGLLGAALFYGDGVITPAISVLSAVEGLEVATPSLEP- 130 (534)
T ss_pred HHheEEEEEEeCCCCChhHHHHHHHHHHhhccchhHHHHHHHHHHHHhhhhhcceeecchHHHHHHhhhhhccCCCCcc-
Confidence 3334444444444 477665443332 3443333 222333356777777888888888766666542
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCccccccc-------cccchH--HHHH
Q 012131 139 FPRIVAVLLLTTALTYMNYRGLTIVGWVAIVLGVFSLVPFALMGLIAIPRLKPWRWCMVDL-------KNVNWG--LYLN 209 (470)
Q Consensus 139 ~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~i~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~-------~~~~~~--~~~~ 209 (470)
....+++++++.+..+...|....++..-=...+=.+.+..+++.-+.+. ++-+...++ ..+++. -.+.
T Consensus 131 -~Vv~it~~ILv~LF~iQ~~GT~~ig~~FgPim~~WF~~l~~~G~~~I~~~-p~Vl~A~nP~yai~f~~~~~~~~~~~LG 208 (534)
T PF02705_consen 131 -YVVPITIAILVGLFAIQRFGTAKIGKLFGPIMLLWFLTLGVLGLYNIIQH-PEVLKALNPYYAIRFFIRNGWIGFFVLG 208 (534)
T ss_pred -eehhHHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHhhC-HHHHHHhCHHHHHHHHHHcCCchhhhcc
Confidence 22455566666777777778776666532211111222223333333222 222211111 112232 2345
Q ss_pred HHHhhhhhHHHhhhhhccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHhccCCCcccccccHHHHHHHHhcchhHHHHH
Q 012131 210 TLFWNLNYWDSISTLVGEVEDPGKTLPRALFYALILVVFAYFFPLLIGTGAAPVHRELWSDGYFSVIAKLIGGVWLRTWI 289 (470)
Q Consensus 210 ~~~~~~~G~e~~~~~~~E~k~P~k~ip~ai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (470)
+++.+.+|-|+.-.--+... +|.+.++-..-+.-..++--+.+-+....-| +...+|+-. ..++++.+-+
T Consensus 209 ~V~L~~TGaEALyADmGHfg--~~~Ir~aw~~~V~PaL~LnY~GQgA~ll~~p----~~~~npFf~----~~P~~~~~p~ 278 (534)
T PF02705_consen 209 AVFLCVTGAEALYADMGHFG--RKPIRIAWFFLVFPALLLNYFGQGALLLSHP----EAVSNPFFL----LIPEWLLWPM 278 (534)
T ss_pred hHHHHHhhHHHHHhhhcccc--chhhhhhHHHHHHHHHHHHHccHHHHHHcCc----chhhhHHHH----HhHHHHHHHH
Confidence 66889999997744333332 4444444332111111111111111222111 122444433 2333444444
Q ss_pred HHHHHHHhHHHHHHHhhhhhHHHHhhhhcCCCchh-hhhcCCCC-----CChH-HHHHHHHHHHHHHHHhHHHHHHHHHH
Q 012131 290 QGASAVSNMGMFIAEMSSDSFQLLGMAERGMLPEI-FARRSQYG-----TPLV-GILFSASGVILLSWLSFQEIVAAENF 362 (470)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~~-~~~~~r~~-----~P~~-ai~~~~~~~~~~~~~~~~~l~~~~~~ 362 (470)
.+.+.++.+-+..+.+.++--+..+.-+-|.+|+. ..+.++++ .|.. -++..+++.+++.+-+-+.+.+++.+
T Consensus 279 ~ilAtlAtIIASQA~Isg~FSl~~Qai~Lg~~Pr~~I~hTS~~~~GQIYIP~vNw~L~i~~i~vvl~F~~S~~la~AYGi 358 (534)
T PF02705_consen 279 VILATLATIIASQAVISGAFSLTRQAIQLGYFPRLKIVHTSEKEEGQIYIPEVNWLLMIGVIAVVLGFRSSSNLAAAYGI 358 (534)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEECCcccCCcEechHHHHHHHHHHHhhheEECChHHHHHHHHH
Confidence 44444433333333333333344455677899962 33333222 2332 23333333344445577888888888
Q ss_pred HHHHHHHHHHHHH
Q 012131 363 LYCFAMIMEFIAF 375 (470)
Q Consensus 363 ~~~~~~~~~~~~~ 375 (470)
+.....+++-+..
T Consensus 359 AVt~tM~iTT~L~ 371 (534)
T PF02705_consen 359 AVTGTMLITTILL 371 (534)
T ss_pred HHHHHHHHHHHHH
Confidence 7777666655433
|
; GO: 0015079 potassium ion transmembrane transporter activity, 0071805 potassium ion transmembrane transport, 0016020 membrane |
| >PRK09395 actP acetate permease; Provisional | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.091 Score=54.74 Aligned_cols=148 Identities=11% Similarity=0.021 Sum_probs=79.6
Q ss_pred cccccchhhHHHhHhhhhcc--cccchhhHHhhhChHHHHHHHHHHHHHHHHH-HHHHHHHhhccCccC--CchhHhHHH
Q 012131 21 RFQKVSVIPLVFLIFYEVSG--GPFGVEDSVMAAGPLLALIGFLFFPFIWSIP-EALITAEMGTMFPEN--GGYVVWVAS 95 (470)
Q Consensus 21 ~~r~l~~~~~~~~~~~~v~g--g~~~~~~~~~~~g~~~~~~~~ii~~~~~~~~-~al~~~el~~~~p~~--GG~y~~~~~ 95 (470)
-.|++++|...+...++..+ ...+.+......|.... .+.++..+ +.+ .++. +++++.+. =..++|.++
T Consensus 67 agr~l~~~~~~~si~At~~Sa~tfiG~~g~~y~~G~~~~--~~~~~~~~-g~~~~~~~---~~~~~r~~g~~T~~d~l~~ 140 (551)
T PRK09395 67 AGGGITGFQNGLAIAGDYMSAASFLGISALVFTSGYDGL--IYSIGFLV-GWPIILFL---IAERLRNLGKYTFADVASY 140 (551)
T ss_pred cCCCCcHHHHHHHHHHHHHHHHHHHHhhHHHHHhCHHHH--HHHHHHHH-HHHHHHHH---HHHHHhhCCCccHHHHHHH
Confidence 56889998777666666444 34455555555554321 11122111 111 1222 33444443 245667778
Q ss_pred hhC-ChHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 012131 96 ALG-PHWGFQQGWMKWLSGVIDNALYPVLFLDYLKSAIPALEGGFPRIVAVLLLTTALTYMNYRGLTIVGWVAIVLGVFS 174 (470)
Q Consensus 96 ~~g-~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~i~~~~~ 174 (470)
-|| +....+.+....+.............+..++..++. + .+..+.+...+.......-|.|...+.+.+=.++.
T Consensus 141 Rygs~~~r~l~av~~iv~~~~yl~~q~~g~g~il~~~~gi---~-~~~~ili~~~i~~iYt~~GGm~av~~TD~iQ~iim 216 (551)
T PRK09395 141 RLKQGPIRTLSACGSLVVVALYLIAQMVGAGKLIQLLFGL---N-YHVAVVLVGVLMMVYVLFGGMLATTWVQIIKAVLL 216 (551)
T ss_pred HcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC---C-HHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHH
Confidence 888 557888877777666666666666666666665432 1 22223333344555556668888777666544444
Q ss_pred HHHH
Q 012131 175 LVPF 178 (470)
Q Consensus 175 i~~~ 178 (470)
++..
T Consensus 217 ~~g~ 220 (551)
T PRK09395 217 LSGA 220 (551)
T ss_pred HHHH
Confidence 4433
|
|
| >COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.094 Score=52.26 Aligned_cols=315 Identities=12% Similarity=0.067 Sum_probs=149.6
Q ss_pred cccccccccchhhHHHhHhhhhcc-cccch-hhHHhh-hChHHHHHHHHHHHHHHHHHHHHHHHHhhccCccCCchhH-h
Q 012131 17 PKLERFQKVSVIPLVFLIFYEVSG-GPFGV-EDSVMA-AGPLLALIGFLFFPFIWSIPEALITAEMGTMFPENGGYVV-W 92 (470)
Q Consensus 17 ~~~~~~r~l~~~~~~~~~~~~v~g-g~~~~-~~~~~~-~g~~~~~~~~ii~~~~~~~~~al~~~el~~~~p~~GG~y~-~ 92 (470)
+.++++|+.+.++-.++=.+.+.. ..+.. +..+.. .++.-++++.+++-++..+++.+ -+..+++ -|=.|- -
T Consensus 33 P~~~~~rtWg~~~~~~~W~~~~~nv~~~~~aa~~~~lGLS~~qallai~vG~~iv~i~m~L-ng~~G~~---~gIpFpv~ 108 (497)
T COG1953 33 PTPAEQRTWGWWNYFALWLGMVHNVPTYMLAAGLFELGLSPWQALLAILVGNLIVAIFMVL-NGHAGSK---YGIPFPVL 108 (497)
T ss_pred CCccccCcchHHHHHHHHHHhhccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHh-ccCcccc---cCCCchHH
Confidence 345688999999998877766422 11222 222222 23444556666665542333222 1111111 232233 3
Q ss_pred HHHhhCChHHHHHHHHH----HHHHhhhHHHHHHHHHHHHHHhccccC--C--------chHHHHHHHHHHHHHHHHHhh
Q 012131 93 VASALGPHWGFQQGWMK----WLSGVIDNALYPVLFLDYLKSAIPALE--G--------GFPRIVAVLLLTTALTYMNYR 158 (470)
Q Consensus 93 ~~~~~g~~~g~~~g~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--------~~~~~~~~~~~~~~~~~~n~~ 158 (470)
.+..||-+-+-.-...= ++.|-...-.........+...+|... + +....+.-+++-.+...+-..
T Consensus 109 ~RaSFGi~Ga~~p~l~R~i~A~~WyGvqty~Gg~av~llL~~i~~~~~~~~~~~~~lg~tt~~~i~F~ifW~l~~l~~~~ 188 (497)
T COG1953 109 SRASFGIYGANFPALIRAIVAIVWYGVQTYAGGLAVNLLLGSIFPSLLIPNTLSPLLGLTTLELICFFIFWVLQLLVLFK 188 (497)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhccccccCCccccccCCcHHHHHHHHHHHHHHHHHHhc
Confidence 45557655443333322 222222222233333334444444311 1 223333343444455566677
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCccc--ccc--cc-ccchHHHHHHHHhhhhhHH----Hhhhhhcccc
Q 012131 159 GLTIVGWVAIVLGVFSLVPFALMGLIAIPRLKPWRWC--MVD--LK-NVNWGLYLNTLFWNLNYWD----SISTLVGEVE 229 (470)
Q Consensus 159 g~~~~~~~~~i~~~~~i~~~~~~~i~~~~~~~~~~~~--~~~--~~-~~~~~~~~~~~~~~~~G~e----~~~~~~~E~k 229 (470)
|.+..+|++.+...+..+..+.+.+....+.+..... .+. .+ ...+..++..+......|- ..+..+.+.|
T Consensus 189 g~~~Ir~~~~~a~p~~~~~~~gl~Iw~~~~a~g~~~~~~~p~~~~~~~~~~w~~~~~~~~~v~~~Atl~lN~~DFsRfa~ 268 (497)
T COG1953 189 GMESIRKFETWAGPLVYIAMLGLAIWALVKAGGSSILGELPAGTVSGSNSSWAFLAGIAAWVGFWATLALNIPDFTRFAK 268 (497)
T ss_pred CHHHHHHHHHHhchHHHHHHHHHHHHHHHhcCCcCccccCCCCCCCcchhHHHHHHHHHHHHHHHHHHhcCCchhhcccC
Confidence 9999999999999998888888888887665553221 111 11 1222333333333333333 3445566666
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHHHHhccCCCcccccccHHHHHHHHhcchhHHH-HHHHHHHHHhHHHHHHH-hhh
Q 012131 230 DPGKTLPRALFYALILVVFAYFFPLLIGTGAAPVHRELWSDGYFSVIAKLIGGVWLRT-WIQGASAVSNMGMFIAE-MSS 307 (470)
Q Consensus 230 ~P~k~ip~ai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~ 307 (470)
+| |+.-++.++++-+...++.+..++.......-.-+...+|.. +..++....... +..+..+++++++..+. ..+
T Consensus 269 s~-~~~~~gq~~gLPv~~~l~~ligvv~tsa~~~lyG~~~w~P~d-i~~~~~~~~~~~fl~~l~~~iati~~Ni~aN~vs 346 (497)
T COG1953 269 SQ-KAQIWGQLVGLPVNFALFSLIGVVVTSASYILYGETIWDPLD-IVARFLSGFYAAFLAGLTFAVATISTNIAANIVS 346 (497)
T ss_pred Ch-hhhhhccchhhhHHHHHHHHHHhhHHHHHHHhhCcccCCHHH-HHHHhccchHHHHHHHHHHHHHHHhhhHHhccCC
Confidence 65 333344555555555555544443332211111112234543 445554444443 55566666666654432 222
Q ss_pred hhHHHHhhhhcCCCchhhhhcCCCCCChHHHHHHHHHHHHHH
Q 012131 308 DSFQLLGMAERGMLPEIFARRSQYGTPLVGILFSASGVILLS 349 (470)
Q Consensus 308 ~sR~l~~~a~d~~lP~~~~~~~r~~~P~~ai~~~~~~~~~~~ 349 (470)
+.-- -.+.+||.... | ++.++.++++.++.
T Consensus 347 p~~D-----~s~l~Pk~in~--k-----rg~liaA~ial~~~ 376 (497)
T COG1953 347 PGYD-----LSALFPKYINI--K-----RGGLIAAIIALLIC 376 (497)
T ss_pred hHHH-----HHHhcccccch--h-----hhHHHHHHHHHHHc
Confidence 2111 12466765442 3 34555555555443
|
|
| >TIGR02711 symport_actP cation/acetate symporter ActP | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.17 Score=52.68 Aligned_cols=150 Identities=13% Similarity=0.033 Sum_probs=77.2
Q ss_pred cccccchhhHHHhHhhhhcc--cccchhhHHhhhChHHHH--HHHHHHHHHHHHHHHHHHHHhhccCccCCchhHhHHHh
Q 012131 21 RFQKVSVIPLVFLIFYEVSG--GPFGVEDSVMAAGPLLAL--IGFLFFPFIWSIPEALITAEMGTMFPENGGYVVWVASA 96 (470)
Q Consensus 21 ~~r~l~~~~~~~~~~~~v~g--g~~~~~~~~~~~g~~~~~--~~~ii~~~~~~~~~al~~~el~~~~p~~GG~y~~~~~~ 96 (470)
-.|++++|.......++..+ ...+.+......|..... +++.++.. ...+.+++--++.-. =...+|.++-
T Consensus 65 aGr~~~~~~~g~si~at~~SaasflG~~G~~y~~G~~~~~~~~g~~~~~~----i~~~~~a~~lrr~g~-~T~~d~l~~R 139 (549)
T TIGR02711 65 AGGNITGFQNGLAIAGDYMSAASFLGISALVYTSGYDGLIYSLGFLVGWP----IILFLIAERLRNLGR-YTFADVASYR 139 (549)
T ss_pred eCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHH----HHHHHHHHHHHHcCC-ccHHHHHHHH
Confidence 46888888765555555433 344555555555543222 22222211 123333443333321 2455566677
Q ss_pred hC-ChHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 012131 97 LG-PHWGFQQGWMKWLSGVIDNALYPVLFLDYLKSAIPALEGGFPRIVAVLLLTTALTYMNYRGLTIVGWVAIVLGVFSL 175 (470)
Q Consensus 97 ~g-~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~i~~~~~i 175 (470)
|+ |....+.+....+..+..........+..++.+++. + .+..+.+...+...+.-+-|.|...+.+.+=.++.+
T Consensus 140 f~s~~~r~l~ai~~i~~~~~yl~~ql~g~g~il~~~~gi---~-~~~~iii~~~i~~~Yt~~GGm~av~~td~iQ~~im~ 215 (549)
T TIGR02711 140 LKQRPIRILSACGSLVVVALYLIAQMVGAGKLIELLFGL---N-YHVAVVLVGILMVMYVLFGGMLATTWVQIIKAVLLL 215 (549)
T ss_pred cCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---C-HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 76 556777776666655555555566666666665542 1 222222233344455556688877777665554444
Q ss_pred HHHH
Q 012131 176 VPFA 179 (470)
Q Consensus 176 ~~~~ 179 (470)
+..+
T Consensus 216 ~g~i 219 (549)
T TIGR02711 216 FGAT 219 (549)
T ss_pred HHHH
Confidence 4333
|
Members of this family belong to the Sodium:solute symporter family. Both members of this family and other close homologs tend to be encoded next to a member of Pfam family pfam04341, a set of uncharacterized membrane proteins. The characterized member from E. coli is encoded near and cotranscribed with the acetyl coenzyme A synthetase (acs) gene. Proximity to an acs gene was used as one criterion for determining the trusted cutoff for this model. Closely related proteins may differ in function and are excluded by the high cutoffs of this model; members of the family of phenylacetic acid transporter PhaJ can score as high as 1011 bits. |
| >TIGR00794 kup potassium uptake protein | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.02 Score=59.60 Aligned_cols=251 Identities=13% Similarity=0.069 Sum_probs=116.7
Q ss_pred HHhhhHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Q 012131 112 SGVIDNALYPVLFLDYLKSAIPALEGGFPRIVAVLLLTTALTYMNYRGLTIVGWVAIVLGVFSLVPFALMGLIAIPRLKP 191 (470)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~i~~~~~i~~~~~~~i~~~~~~~~ 191 (470)
+.+.+.+.....+.+-++...|....+ ....+++++++.+..+.-.|....++..-=...+=.+.+.++++.-+.+.++
T Consensus 140 DgviTPAiSVLSAVeGl~v~~p~~~~~-~Vv~it~~ILv~LF~iQ~~GT~kvg~~FgPim~vWF~~l~~~Gi~~I~~~~P 218 (688)
T TIGR00794 140 DGVLTPAISVLSAVSGLEIVAPSLSDT-WVVPISCIILVLLFLIQRFGTAKVGFTFAPIILVWLLLLAGIGIYNIVKFNP 218 (688)
T ss_pred ccccccchhhhhhhccccccCCCCCCC-eehhHHHHHHHHHHHHhccccHHHhhhhhhHHHHHHHHHHHHHHHHHHhcCH
Confidence 455666666777777666666655332 2244555666677777777876666544322222233344444444444444
Q ss_pred Cccccccc-------cccchHH--HHHHHHhhhhhHHHhhhhhccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHhccC
Q 012131 192 WRWCMVDL-------KNVNWGL--YLNTLFWNLNYWDSISTLVGEVEDPGKTLPRALFYALILVVFAYFFPLLIGTGAAP 262 (470)
Q Consensus 192 ~~~~~~~~-------~~~~~~~--~~~~~~~~~~G~e~~~~~~~E~k~P~k~ip~ai~~~~~~~~~~y~l~~~~~~~~~~ 262 (470)
.-+...++ ..+++.+ .+.+++.+.+|-|+.-.--+..- +|.+.++-..-+.-+.++--+.+-+....-|
T Consensus 219 ~Vl~AlnP~ya~~f~~~~~~~~~~~LG~V~L~iTGaEALyADmGHFg--~~~Ir~aw~~~V~P~L~LnY~GQgA~ll~~p 296 (688)
T TIGR00794 219 EVLKALSPYYAVQFFIEYGTVGWVSLGGVVLSITGVEAMFADLGHFG--KLPIQLAWFTFVYPSLILCYIGQAAYLSKHP 296 (688)
T ss_pred HHHhHhCHHHHHHHHHHCCCceeeeccchhheeccHhhhhcccCCCC--cccceeehHHHHHHHHHHHHcchHHHHhcCc
Confidence 33322221 1223333 44567889999997733222222 3334333221111111111111111121111
Q ss_pred CCcccccccHHHHHHHHhcchhHHHHHHHHHHHHhHHHHHHHhhhhhHHHHhhhhcCCCchh-hhhcC-C-CC---CChH
Q 012131 263 VHRELWSDGYFSVIAKLIGGVWLRTWIQGASAVSNMGMFIAEMSSDSFQLLGMAERGMLPEI-FARRS-Q-YG---TPLV 336 (470)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~~-~~~~~-r-~~---~P~~ 336 (470)
+...+|+-. ..+++..+-+.+.+.++.+-+..+.+.++--+..+.-+-|.+|+. ..+.+ + ++ .|..
T Consensus 297 ----~~~~NpFf~----~~P~~~~~p~~vlAtlAtIIASQA~IsG~FSl~~Qai~Lg~~Pr~~I~hTS~~~~GQIYiP~v 368 (688)
T TIGR00794 297 ----EAIKNPFFL----SIPDWALWPLFIIATLAAIIASQAVISGVFSITSQAVRLGCFPRVKIIHTSEKYHGQIYIPFV 368 (688)
T ss_pred ----chhcCcHHH----hCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEecCCccCCceeeHHH
Confidence 122345432 234455444444444443333333333333344455677899952 33333 2 12 2322
Q ss_pred -HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 012131 337 -GILFSASGVILLSWLSFQEIVAAENFLYCFAMIMEFI 373 (470)
Q Consensus 337 -ai~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 373 (470)
-++..+++..++.+-+.+.+.+++.++.....+++-+
T Consensus 369 Nw~Lmv~~i~vvl~F~~S~~la~AYGiaVt~tM~iTT~ 406 (688)
T TIGR00794 369 NWLLMLGVIAVTAGFRDTNNLGAAYGIAVTGTFLVTTC 406 (688)
T ss_pred HHHHHHHHHheeEEecChHHHHHHhhhhhhhhhHHHHH
Confidence 2233333333444556778888887766655554443
|
Proteins of the KUP family include the KUP (TrkD) protein of E. coli, a partially sequenced ORF from Lactococcus lactis, high affinity K+ uptake systems (Hak1) of the yeast Debaryomyces occidentalis as well as the fungus, Neurospora crassa, and several homologues in plants. While the E. coli KUP protein is assumed to be a secondary transporter, and uptake is blocked by protonophores such as CCCP (but not arsenate), the energy coupling mechanism has not been defined. However, the N. crassa protein has been shown to be a K+:H+ symporter, establishing that the KUP family consists of secondary carriers. The plant high affinity (20mM) K+ transporter can complement K+ uptake defects in E. coli. |
| >TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.46 Score=49.54 Aligned_cols=144 Identities=9% Similarity=-0.085 Sum_probs=82.0
Q ss_pred cccccchhhHHHhHhhhhcc--cccchhhHHhhhChHH--HHHHHHHHHHHHHHHHHHHHHHhhccCccCCchhHhHHHh
Q 012131 21 RFQKVSVIPLVFLIFYEVSG--GPFGVEDSVMAAGPLL--ALIGFLFFPFIWSIPEALITAEMGTMFPENGGYVVWVASA 96 (470)
Q Consensus 21 ~~r~l~~~~~~~~~~~~v~g--g~~~~~~~~~~~g~~~--~~~~~ii~~~~~~~~~al~~~el~~~~p~~GG~y~~~~~~ 96 (470)
-.|++++|.......++..+ ...+.+......|... ..+++.++.+ ..++.+++.-++... -..+.|.++-
T Consensus 30 aGr~l~~~~~~~s~~At~~Sa~tflG~~g~~y~~G~~~~~~~~g~~~~~~----~~~~~~~p~~rr~~~-~T~~e~l~~R 104 (552)
T TIGR03648 30 AGRGVPPVANGMATAADWMSAASFISMAGLIAFLGYDGLAYLMGWTGGYV----LLALLLAPYLRKFGK-YTVPDFIGDR 104 (552)
T ss_pred eCCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhChHHHHHHHHHHHHHH----HHHHHHHHHHHHCCC-ccHHHHHHHH
Confidence 56899999877776666444 3444555555555422 2233333222 124555666665543 4788999999
Q ss_pred hCCh-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 012131 97 LGPH-WGFQQGWMKWLSGVIDNALYPVLFLDYLKSAIPALEGGFPRIVAVLLLTTALTYMNYRGLTIVGWVAIVLGVF 173 (470)
Q Consensus 97 ~g~~-~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~i~~~~ 173 (470)
||++ ...+.+....+..+...+......+..++.+.+. + .+..+.+..++.......-|.|...+...+=.++
T Consensus 105 f~s~~~~~~~~i~~~~~~~~~l~~ql~~~~~~l~~~~gi---~-~~~~iii~~~i~~iYt~~GG~~aV~~TD~iQ~ii 178 (552)
T TIGR03648 105 YYSNTARLVAVICAIFISFTYVAGQMRGVGVVFSRFLEV---D-FETGVFIGMAIVFFYAVLGGMKGVTWTQVAQYIV 178 (552)
T ss_pred hCCCceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---C-HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 9844 6777777776666666666666666666665542 1 2222222223344455555777776655544333
|
This family belongs to a larger family of transporters of the sodium:solute symporter superfamily, TC 2.A.21. Members of this strictly bacterial protein subfamily are found almost invariably immediately downstream from a member of family TIGR03647. Occasionally, the two genes are fused. |
| >PRK10484 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.59 Score=48.43 Aligned_cols=285 Identities=13% Similarity=0.030 Sum_probs=124.2
Q ss_pred cccccchhhHHHhHhhhhcc--cccchhhHHhhhChHHHHHHHHHHHHHHHHHHHHHHHHhhccCccCCchhHhHHHhhC
Q 012131 21 RFQKVSVIPLVFLIFYEVSG--GPFGVEDSVMAAGPLLALIGFLFFPFIWSIPEALITAEMGTMFPENGGYVVWVASALG 98 (470)
Q Consensus 21 ~~r~l~~~~~~~~~~~~v~g--g~~~~~~~~~~~g~~~~~~~~ii~~~~~~~~~al~~~el~~~~p~~GG~y~~~~~~~g 98 (470)
-.|+++++-..+-..++..+ ...+.+......|.... .|.....+..+..++.++.--++. +.=..++|.++-||
T Consensus 36 agR~l~~~~~~~sl~AT~~Sa~tflG~~g~~y~~G~~~~--~~~~~~~~~~~~~~~~~~p~~~r~-~~~T~~e~l~~Ryg 112 (523)
T PRK10484 36 AGRSLTGPVIAGSLLLTNLSTEQLVGLNGQAYASGMSVM--AWEVTAAIALIILALIFLPRYLKS-GITTIPDFLEERYD 112 (523)
T ss_pred cCCCCchHHHHHHHHHHHhhHHHHhcchHHHHHhCHHHH--HHHHHHHHHHHHHHHHHHHHHHhc-CCccHHHHHHHhcC
Confidence 56999999877766666434 34555665555565321 122222111222233333322222 22477889999999
Q ss_pred ChHHHHHHHHHHHHHhhh-HHHHHHHHHHHHHHhcc---ccCCchHHHH-H-HH-HHHHHHHHHHhhhhHHHHHHHHHHH
Q 012131 99 PHWGFQQGWMKWLSGVID-NALYPVLFLDYLKSAIP---ALEGGFPRIV-A-VL-LLTTALTYMNYRGLTIVGWVAIVLG 171 (470)
Q Consensus 99 ~~~g~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~---~~~~~~~~~~-~-~~-~~~~~~~~~n~~g~~~~~~~~~i~~ 171 (470)
++..........+.+... .+......+..++..+. ..+.+..... . .+ +..+...+...-|.|...+...+=.
T Consensus 113 ~~~~~~~~~~~~i~~~~~~~~~~l~~g~~~l~~i~~~~~~~gi~~~~~~~~~~~~~~~i~~~Yt~~GGl~aV~~TD~iQ~ 192 (523)
T PRK10484 113 KTTRRIVSILFLIGYVVSFLPIVLYSGALALNSLFHVSELLGISYGAAIWLLVWLIGIIGAIYAVFGGLKAVAVSDTING 192 (523)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHH
Confidence 876665555544444432 22222222223333221 1111111111 1 11 1123344555567777766555444
Q ss_pred HHHHHHHHHHHHHHh---h------------ccCCCcccccccc--ccchHHHHHHHHh-hhhhH---HHhhhhhccccC
Q 012131 172 VFSLVPFALMGLIAI---P------------RLKPWRWCMVDLK--NVNWGLYLNTLFW-NLNYW---DSISTLVGEVED 230 (470)
Q Consensus 172 ~~~i~~~~~~~i~~~---~------------~~~~~~~~~~~~~--~~~~~~~~~~~~~-~~~G~---e~~~~~~~E~k~ 230 (470)
++.++..+++.+..+ . ..+++.+...+.. ...|...+....+ .+.++ ....+-.=-.||
T Consensus 193 vim~i~~iiv~~~~l~~~g~g~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~qR~~aak~ 272 (523)
T PRK10484 193 IGLLIGGLLVPVFGLIALGDGSFMQGLEQLTTVHPEKLNSIGGATDPVPFPTLFTGLILVNLFYWCTNQSIVQRALGAKN 272 (523)
T ss_pred HHHHHHHHHHHHHHHHHhCCccHHhHHHHHhhcCchhhcccCCCCCCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHhCCC
Confidence 333333222221111 1 0111122111111 1223322222111 11111 111111112455
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHH---HHHHhccCCCcccccccHHHHHHHHhcchhHHHHHHHHHHHHhHHHHHHHhhh
Q 012131 231 PGKTLPRALFYALILVVFAYFFPL---LIGTGAAPVHRELWSDGYFSVIAKLIGGVWLRTWIQGASAVSNMGMFIAEMSS 307 (470)
Q Consensus 231 P~k~ip~ai~~~~~~~~~~y~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (470)
+|+..|+.+++.....+.+.... +......|. +.++.+..+..+..+..++++..++....+.+..++..+.+.+
T Consensus 273 -~k~a~~~~~~~~~~~~~~~~~~~~~G~~a~~~~p~-~~~~~d~~~p~~~~~~lp~~l~Gl~~a~ilAA~mST~~s~l~s 350 (523)
T PRK10484 273 -LAEGQKGALLAAFFKLLGPLILVLPGIIAFHLYGD-GLPNADMAYPTLVNDVLPVPLVGFFAAVLFGAILSTFNGFLNS 350 (523)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-ccCChhhHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36677888777654433333321 112222232 1233455566666777777776666666666666666666655
Q ss_pred hhH
Q 012131 308 DSF 310 (470)
Q Consensus 308 ~sR 310 (470)
.|=
T Consensus 351 ~st 353 (523)
T PRK10484 351 AST 353 (523)
T ss_pred HHH
Confidence 443
|
|
| >PLN00149 potassium transporter; Provisional | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.34 Score=51.17 Aligned_cols=251 Identities=11% Similarity=0.049 Sum_probs=112.0
Q ss_pred HHhhhHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Q 012131 112 SGVIDNALYPVLFLDYLKSAIPALEGGFPRIVAVLLLTTALTYMNYRGLTIVGWVAIVLGVFSLVPFALMGLIAIPRLKP 191 (470)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~i~~~~~i~~~~~~~i~~~~~~~~ 191 (470)
+.+.+.+.....+.+-++...|....+.....+++++++.+..+.-+|....++..-=...+=.+.+..++++-+.+.++
T Consensus 169 DgvlTPAISVLSAVeGl~v~~~~~~~~~vvv~is~~ILv~LF~~Q~~GT~kvg~~FgPIml~Wf~~i~~iGiyni~~~~p 248 (779)
T PLN00149 169 DGVLTPAISVFSAVSGLELSMSKEHHKYVEVPVACIILIGLFALQHYGTHRVGFLFAPVVLTWLLCISAIGVYNIFHWNP 248 (779)
T ss_pred ccccchhHHHHHHhhcccccCCCccCCceehHHHHHHHHHHHHHhccccHHHhhhhhhHHHHHHHHHHHHHHHHHHhcCH
Confidence 45556666666666666655533222222244666777777778888876666544322222223334444444445544
Q ss_pred Ccccccccc-------ccch--HHHHHHHHhhhhhHHHhhh-hhccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHhcc
Q 012131 192 WRWCMVDLK-------NVNW--GLYLNTLFWNLNYWDSIST-LVGEVEDPGKTLPRALFYALILVVFAYFFPLLIGTGAA 261 (470)
Q Consensus 192 ~~~~~~~~~-------~~~~--~~~~~~~~~~~~G~e~~~~-~~~E~k~P~k~ip~ai~~~~~~~~~~y~l~~~~~~~~~ 261 (470)
.-+...++. .++. ...+.+++.+.+|-|+.-. ++.=-| |.+.+|-..-+.=+.++--+..-+.+..
T Consensus 249 ~Vl~AlnP~y~~~f~~~~~~~g~~~LGgV~L~iTG~EALyADlGHF~~---~~Ir~aw~~~V~P~L~L~Y~GQaA~l~~- 324 (779)
T PLN00149 249 HVYQALSPYYMYKFLKKTQRGGWMSLGGILLCITGSEAMFADLGHFSQ---LSIKIAFTSLVYPSLILAYMGQAAYLSK- 324 (779)
T ss_pred hHhhhcCHHHHHHHHHHCCCceeEeecchhhcccchhhhhhcccCCCc---cceeeeehhhHHHHHHHHhhhHHHHHhc-
Confidence 433222210 1111 1234566789999997633 333333 3343332221111111111222222221
Q ss_pred CCCcccccccHHHHHHHHhcchhHHHHHHHHHHHHhHHHHHHHhhhhhHHHHhhhhcCCCchh-hhhcC-CC-C---CCh
Q 012131 262 PVHRELWSDGYFSVIAKLIGGVWLRTWIQGASAVSNMGMFIAEMSSDSFQLLGMAERGMLPEI-FARRS-QY-G---TPL 335 (470)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~~-~~~~~-r~-~---~P~ 335 (470)
.++......+|+- ...++++.+-+.+++.++.+-+.-+.+.++--+..+.-+-|.+|+. .-+.+ +. + .|.
T Consensus 325 ~p~~~~~~~~pFy----~~iP~~~~~P~~vlAtlAaIIASQA~ISg~FSii~Qa~~Lg~fPrvkIvhTS~~~~GQIYIP~ 400 (779)
T PLN00149 325 HHVIESDYRIGFY----VSVPEKLRWPVLVIAILAAVVGSQAIITGTFSIIKQCSALGCFPKVKIVHTSSKIHGQIYIPE 400 (779)
T ss_pred CcchhccccCcHH----HhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEecCcccCCceeeHH
Confidence 1221122233432 2233444444444444443333333333333344445566899952 33333 21 1 232
Q ss_pred H-HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 012131 336 V-GILFSASGVILLSWLSFQEIVAAENFLYCFAMIM 370 (470)
Q Consensus 336 ~-ai~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 370 (470)
. -++..+++...+.+-+.+.+.+++.++.....++
T Consensus 401 vNw~Lmv~~i~vv~~F~~s~~l~~AYGiAV~~vM~i 436 (779)
T PLN00149 401 INWTLMLLCLAVTVGFRDTKRLGNASGLAVITVMLV 436 (779)
T ss_pred HHHHHHHHHHhheeEecChHHHHHHhhhhhehHHHH
Confidence 2 2222333333344446777888777765444333
|
|
| >PRK10745 trkD potassium transport protein Kup; Provisional | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.27 Score=50.61 Aligned_cols=252 Identities=15% Similarity=0.095 Sum_probs=114.8
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012131 108 MKWLSGVIDNALYPVLFLDYLKSAIPALEGGFPRIVAVLLLTTALTYMNYRGLTIVGWVAIVLGVFSLVPFALMGLIAIP 187 (470)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~i~~~~~i~~~~~~~i~~~~ 187 (470)
...-+.+.+.+.....+.|-++...|...+ ....+++++++.+..+...|....++..-=...+=.+.+.++++..+.
T Consensus 112 l~~gDgvITPAISVLSAVEGL~v~~p~l~~--~Vvpit~~ILv~LF~iQ~~GT~~vG~~FgPIm~vWF~~i~~~Gi~~I~ 189 (622)
T PRK10745 112 FFYGEVVITPAISVMSAIEGLEIVAPQLDT--YIVPLSIIVLTLLFMIQKHGTGMVGKLFAPIMLTWFLTLAVLGLRSII 189 (622)
T ss_pred HHhhccccchhHHHHHHhhcccccCCCCCC--ccHHHHHHHHHHHHHHhccccHHHhhhhhhHHHHHHHHHHHHHHHHHh
Confidence 334456777777777777777766666532 234566666667777777777666654322211212223333333333
Q ss_pred ccCCCccccccc-------cccchHH--HHHHHHhhhhhHHHhhh-hhccccCCCCchhHHHHHHHHHHHHHHHHHHHHH
Q 012131 188 RLKPWRWCMVDL-------KNVNWGL--YLNTLFWNLNYWDSIST-LVGEVEDPGKTLPRALFYALILVVFAYFFPLLIG 257 (470)
Q Consensus 188 ~~~~~~~~~~~~-------~~~~~~~--~~~~~~~~~~G~e~~~~-~~~E~k~P~k~ip~ai~~~~~~~~~~y~l~~~~~ 257 (470)
+ ++.-+...++ ..+++.+ .+.+++.+.+|-|+.-. ++.=- +|.+.++-..-+.=+.++--+.+-+.
T Consensus 190 ~-~P~Vl~AlnP~ya~~f~~~~~~~gf~~LG~V~L~vTGaEALYADmGHFG---~~~Ir~aW~~~v~P~L~LnY~GQgA~ 265 (622)
T PRK10745 190 A-NPEVLHALNPMWAVHFFLEYKTVSFFALGAVVLAITGVEALYADMGHFG---KFPIRLAWFTVVLPSLVLNYFGQGAL 265 (622)
T ss_pred c-CHHHHhHhCHHHHHHHHHhCCCceEEEecceeeeccchHHHhhccCCCC---ccceeeeehhhHHHHHHHHhcchHHH
Confidence 2 2322211111 1122222 33556788999997633 33323 34443332221111111111111111
Q ss_pred HhccCCCcccccccHHHHHHHHhcchhHHHHHHHHHHHHhHHHHHHHhhhhhHHHHhhhhcCCCchh-hhhcC-C--CCC
Q 012131 258 TGAAPVHRELWSDGYFSVIAKLIGGVWLRTWIQGASAVSNMGMFIAEMSSDSFQLLGMAERGMLPEI-FARRS-Q--YGT 333 (470)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~~-~~~~~-r--~~~ 333 (470)
... +.+...+|+-.. .++++.+-+.+.+.++.+-+..+.+.++--+..+.-+-|.+|+. ..+.+ + -|.
T Consensus 266 ll~----~p~~~~NpFf~~----~P~~~~~p~viLATlAtIIASQAvISGaFSl~~QAi~Lg~~Prl~I~hTS~~~~GQI 337 (622)
T PRK10745 266 LLK----NPEAIKNPFFLL----APDWALIPLLILATLATVIASQAVISGVFSLTRQAVRLGYLPPMRIIHTSEMESGQI 337 (622)
T ss_pred Hhc----CchhhcCcHHHh----CChhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCCCCceEEeCCCccCCce
Confidence 111 112234454332 33444443444443333333233333333334455567899952 33333 2 122
Q ss_pred --ChH-HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 012131 334 --PLV-GILFSASGVILLSWLSFQEIVAAENFLYCFAMIMEFI 373 (470)
Q Consensus 334 --P~~-ai~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 373 (470)
|.. -++..+++..++.+-+.+.+.+++.++.....+++-+
T Consensus 338 YIP~vNw~Lmv~~i~~vl~F~sS~~La~AYGiAVt~tM~iTT~ 380 (622)
T PRK10745 338 YIPFVNWLLYVAVVIVIVSFEHSSNLAAAYGIAVTGTMVLTSI 380 (622)
T ss_pred eeHHHHHHHHHHHHeeEEEecCchHHHHHhhhhheeHhHHHHH
Confidence 222 2233333333444556778888887765555444443
|
|
| >COG4147 DhlC Predicted symporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.88 Score=45.08 Aligned_cols=317 Identities=14% Similarity=0.123 Sum_probs=162.5
Q ss_pred cccch-hhHHHhHhhhhcc-cccchhhHHhhhCh--HHHHHHHHHHHHHHHHHHHHHHHHhhccCccCCchhHhH-HHhh
Q 012131 23 QKVSV-IPLVFLIFYEVSG-GPFGVEDSVMAAGP--LLALIGFLFFPFIWSIPEALITAEMGTMFPENGGYVVWV-ASAL 97 (470)
Q Consensus 23 r~l~~-~~~~~~~~~~v~g-g~~~~~~~~~~~g~--~~~~~~~ii~~~~~~~~~al~~~el~~~~p~~GG~y~~~-~~~~ 97 (470)
|+++- +...++.-..|.. +..+.+..+...|- .....+|..+-.+ ..++.+|--+++-+- ..-++. .|..
T Consensus 41 ~~i~~fqNGlAiagdyMSaASflGiag~I~~~GYdG~~Y~iG~~~Gy~i----~~fL~A~~LRk~Gky-T~aD~~a~Ry~ 115 (529)
T COG4147 41 GRITGFQNGLAIAGDYMSAASFLGIAGLIFISGYDGLIYSIGWTGGYPI----LLFLIAEYLRKLGKY-TFADFIADRYK 115 (529)
T ss_pred CcccccccceehhccccchHhhhchhHhhhhcccchHHHHHHHHHHHHH----HHHHHHHHHHhcCCc-chHHHHHHHHh
Confidence 34433 3333443333432 33444444444331 2344555544322 366677777776332 222333 4555
Q ss_pred CChHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 012131 98 GPHWGFQQGWMKWLSGVIDNALYPVLFLDYLKSAIPALEGGFPRIVAVLLLTTALTYMNYRGLTIVGWVAIVLGVFSLVP 177 (470)
Q Consensus 98 g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~i~~~~~i~~ 177 (470)
.++.-++......+...+....-..+.+..+..++.. .....+.++.++......+-|.|.+.|.|.+=.++-+..
T Consensus 116 ~~~~R~~aa~~ti~vs~~YliaQmvGaG~li~~l~gv----~~~vgv~ig~ilm~~Yvv~GGM~atTW~Qi~qavlLi~a 191 (529)
T COG4147 116 SNPARLLAAIGTIIVSFLYLIAQMVGAGLLISLLLGV----PYHVGVVIGGILMMVYVVLGGMKATTWVQIIQAVLLIVA 191 (529)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCC----CceeehhhHhHHHHHHHHhcchhhhhHHHHHHHHHHHHH
Confidence 5777788887777777777777777777777777653 133344455566777777889999999998766555555
Q ss_pred HHHHHHHHhhc--cCCCcc----------------ccccccccchHHHHHHHHhhhhhHHHhhhhhcc-ccCC-CCchhH
Q 012131 178 FALMGLIAIPR--LKPWRW----------------CMVDLKNVNWGLYLNTLFWNLNYWDSISTLVGE-VEDP-GKTLPR 237 (470)
Q Consensus 178 ~~~~~i~~~~~--~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~G~e~~~~~~~E-~k~P-~k~ip~ 237 (470)
.++..+....+ ++++.. .++.....++..++...+-...|.-..+|.--. ..-| .|+..|
T Consensus 192 ~~i~ai~i~~~~~g~~~~~~~~~~~~~~~~~~~~~~~pGl~~~~~i~~isl~~aLm~GTAgLPHil~RFfTvp~~k~AR~ 271 (529)
T COG4147 192 ALIMAIMIMWKLGGNPNPLFAEAVTVHPKDDGSDIMEPGLLYKDPIDFISLGFALMVGTAGLPHILMRFFTVPDAKEARK 271 (529)
T ss_pred HHHHHHHHHHHHcCCcchHHHHHhhcCcccCcccccCCCCcccCHHHHHHHHHHHHHccCCCCeEEEEEEecCcHHHHHH
Confidence 44444443322 121110 011111234445554444444565555554321 1122 256667
Q ss_pred HHHHHHHHHHHHHHHHHHHHH----hcc----CC-----------Ccc-----cccccHHHHHHHHhc-chhHHHHHHHH
Q 012131 238 ALFYALILVVFAYFFPLLIGT----GAA----PV-----------HRE-----LWSDGYFSVIAKLIG-GVWLRTWIQGA 292 (470)
Q Consensus 238 ai~~~~~~~~~~y~l~~~~~~----~~~----~~-----------~~~-----~~~~~~~~~~~~~~~-~~~~~~~~~~~ 292 (470)
+..++...++.+|+..-..-. ... +. |.. ...+.....++...+ ++++..++...
T Consensus 272 Sv~wA~~fIg~fYi~~~~ig~~A~~~v~t~~~~~p~w~~~w~~~~D~~~~gi~~~~n~a~vlaa~~i~~g~~v~g~vsAg 351 (529)
T COG4147 272 SVFWATGFIGIFYILTPIIGAGARLLVGTNPVGKPAWAAKWIKTGDANGDGIGGWTNMAAVLAAPAIGGGPWVLGFVSAG 351 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCcchhhcccccccccccccccccchHHHhhhHHhcCCceehhHHHHH
Confidence 888999999999987654322 111 11 110 011222333445555 56666666655
Q ss_pred HHHHhHHHHHHHh----hhhhHHHHhhhhcCCCchhhhhcCCCCCChHHHHHHHHHHHHHHHHh
Q 012131 293 SAVSNMGMFIAEM----SSDSFQLLGMAERGMLPEIFARRSQYGTPLVGILFSASGVILLSWLS 352 (470)
Q Consensus 293 ~~~~~~~~~~~~~----~~~sR~l~~~a~d~~lP~~~~~~~r~~~P~~ai~~~~~~~~~~~~~~ 352 (470)
.+-..+++.-+.. .+.||=+|.+--|+- .++..+-..-..++.+..+++..+....
T Consensus 352 a~AtaLstaaGL~l~iasavsHDiY~~vik~~----ase~~~v~vaRi~~v~~~vva~~lgi~~ 411 (529)
T COG4147 352 AFATALSTAAGLLLVIASAVSHDLYAMVIKKG----ATEKKEVRVARIAVVILGVVAILLGILP 411 (529)
T ss_pred HHHHHHHHHhhHHHHHHHHHHhHHHHHHhCCC----CCccceehhHHHHHHHHHHHHHHheecC
Confidence 5444444433322 234555555443322 2222234444556666666666655553
|
|
| >PF02028 BCCT: BCCT family transporter; InterPro: IPR000060 These prokaryotic transport proteins belong to a family known as BCCT (for Betaine / Carnitine / Choline Transporters) and are specific for compounds containing a quaternary nitrogen atom | Back alignment and domain information |
|---|
Probab=96.56 E-value=1.1 Score=45.62 Aligned_cols=115 Identities=10% Similarity=0.058 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCcc--CCchhHhHHHhhCChHHHHHHHHHHHHHhhhHHH----HHHHHHHHHHHhc
Q 012131 59 IGFLFFPFIWSIPEALITAEMGTMFPE--NGGYVVWVASALGPHWGFQQGWMKWLSGVIDNAL----YPVLFLDYLKSAI 132 (470)
Q Consensus 59 ~~~ii~~~~~~~~~al~~~el~~~~p~--~GG~y~~~~~~~g~~~g~~~g~~~~~~~~~~~~~----~~~~~~~~~~~~~ 132 (470)
.+|.+-++. +++.++.+.. +..|- +...|....+...+.+|.+.-....++.+...+. .....+.-++..+
T Consensus 134 ~~Wa~Y~~~-~l~~ay~~y~--k~~~~~~ss~l~pl~g~~~~g~~g~~ID~l~i~a~~~GvatslGlg~~qi~~gl~~~~ 210 (485)
T PF02028_consen 134 HAWAIYALV-GLAIAYFFYN--KGKPLRISSALYPLLGDRINGPLGKIIDILAIFATIFGVATSLGLGVPQISAGLSSLF 210 (485)
T ss_dssp HHHHHHHHH-HHHHHHHHHT--S---SSGGGGCHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHH-HHHHheeeee--cCCCCchhhhhhhhcCCcccCcchhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHc
Confidence 344444443 5555554444 44443 4555555555444556777666666655554443 3334444555555
Q ss_pred cccCCchHHHHHHHHHHHHHHHHHhhhhHH-HHHHHHHHHHHHHH
Q 012131 133 PALEGGFPRIVAVLLLTTALTYMNYRGLTI-VGWVAIVLGVFSLV 176 (470)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~n~~g~~~-~~~~~~i~~~~~i~ 176 (470)
+..++...+..+..++..+...-...|++. .++..++-..+.++
T Consensus 211 Gi~~~~~~~~~ii~~~~~i~~~S~~~Gl~kGIk~LS~~n~~l~~~ 255 (485)
T PF02028_consen 211 GIPNTFGLQIIIIIVITVIFTISAVSGLDKGIKRLSNINVYLAFA 255 (485)
T ss_dssp TSSSTHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHH
T ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 433333444455555556666666666533 44444433333333
|
The BCCT proteins contain 12 transmembrane regions and are energized by proton symport. They contain a conserved region with four tryptophans in their central region [].; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2WSX_B 3HFX_A 2WSW_A 4DOJ_B 2WIT_C 4AIN_A 3P03_B. |
| >PLN00148 potassium transporter; Provisional | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.34 Score=51.21 Aligned_cols=245 Identities=12% Similarity=0.062 Sum_probs=111.5
Q ss_pred HHhhhHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Q 012131 112 SGVIDNALYPVLFLDYLKSAIPALEGGFPRIVAVLLLTTALTYMNYRGLTIVGWVAIVLGVFSLVPFALMGLIAIPRLKP 191 (470)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~i~~~~~i~~~~~~~i~~~~~~~~ 191 (470)
+.+.+.+.....+.+-++...|....+. ...+++++++.+..+.-+|....++..-=...+=.+.+..++++-+.+.++
T Consensus 169 DgvlTPAISVLSAVeGl~v~~p~~~~~~-vv~is~~ILv~LF~vQ~~GT~kVg~~FgPIm~lWf~~i~~iGiyni~~~~p 247 (785)
T PLN00148 169 DGVLTPAISVLSSVSGLQVTETKLTDGE-LVLLACVILVGLFALQHCGTHRVAFMFAPIVIIWLLSIGSIGLYNIIHWNP 247 (785)
T ss_pred ccccchhHHHHHHhccceecCCCCCCCe-ehhHHHHHHHHHHHHhccccHHHHhhhhhHHHHHHHHHHHHHHHHHHhcCH
Confidence 4566666677777776666556543322 234555666677777777876666544322222233344444554455544
Q ss_pred Cccccccc-------cccchH--HHHHHHHhhhhhHHHhhh-hhccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHhcc
Q 012131 192 WRWCMVDL-------KNVNWG--LYLNTLFWNLNYWDSIST-LVGEVEDPGKTLPRALFYALILVVFAYFFPLLIGTGAA 261 (470)
Q Consensus 192 ~~~~~~~~-------~~~~~~--~~~~~~~~~~~G~e~~~~-~~~E~k~P~k~ip~ai~~~~~~~~~~y~l~~~~~~~~~ 261 (470)
.-+...++ ..++.. ..+.+++.+.+|-|+.-. ++.=-| |.+.++-..-+.=+.++--+..-+.+.--
T Consensus 248 ~Vl~AlnP~y~~~ff~~~~~~g~~~LGgV~L~iTGaEALyADlGHFg~---~~Iriaw~~~V~P~L~L~Y~GQaA~ll~~ 324 (785)
T PLN00148 248 KIIHALSPYYIIKFFRVTGKDGWISLGGILLSITGTEAMFADLGHFTA---ASIRLAFATVIYPCLVVQYMGQAAFLSKN 324 (785)
T ss_pred HHhhhcCHHHHHHHHHhCCCceEEeecchheeccchhhhhhhccCCCc---cceEEeeeehHHHHHHHHHcchHHHHhcC
Confidence 43322221 111221 234566789999997733 333333 33333322111111111111222222211
Q ss_pred CCCcccccccHHHHHHHHhcchhHHHHHHHHHHHHhHHHHHHHhhhhhHHHHhhhhcCCCchh-hhhcC-C-CC---CCh
Q 012131 262 PVHRELWSDGYFSVIAKLIGGVWLRTWIQGASAVSNMGMFIAEMSSDSFQLLGMAERGMLPEI-FARRS-Q-YG---TPL 335 (470)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~~-~~~~~-r-~~---~P~ 335 (470)
| +...+|+- ...+++..+-+.+++.++.+-+..+.+.++--+..+.-+-|.+|+. .-+.+ + ++ .|.
T Consensus 325 p----~~~~npFf----~~iP~~~~~P~~vlAtlAtIIASQA~ISg~FSi~~Qai~Lg~fPrvkIvhTS~~~~GQIYIP~ 396 (785)
T PLN00148 325 I----PSIPNSFY----DSIPDPVFWPVFVIATLAAIVGSQAVITATFSIVKQCHALGCFPRVKVVHTSKHIYGQIYIPE 396 (785)
T ss_pred c----ccccCcHH----HhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEecCCccCCceeeHH
Confidence 2 12234432 2233344444444444443333333333333334444566899952 33333 2 12 233
Q ss_pred HH-HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 012131 336 VG-ILFSASGVILLSWLSFQEIVAAENFLYCFAM 368 (470)
Q Consensus 336 ~a-i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 368 (470)
.- ++..+++...+.+-+.+.+.+++.++.....
T Consensus 397 vNw~Lmv~~i~vv~~F~~s~~la~AYGiAV~~vM 430 (785)
T PLN00148 397 INWILMILTLAVTIGFRDTTLIGNAYGLACMTVM 430 (785)
T ss_pred HHHHHHHHHHHhheeeccchhHHHhhhhheeeHH
Confidence 22 2233333334444467777777776544433
|
|
| >PLN00150 potassium ion transporter family protein; Provisional | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.3 Score=51.51 Aligned_cols=247 Identities=14% Similarity=0.041 Sum_probs=108.9
Q ss_pred HHhhhHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Q 012131 112 SGVIDNALYPVLFLDYLKSAIPALEGGFPRIVAVLLLTTALTYMNYRGLTIVGWVAIVLGVFSLVPFALMGLIAIPRLKP 191 (470)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~i~~~~~i~~~~~~~i~~~~~~~~ 191 (470)
+.+.+.+.....+.+-++...|....+ ....+++++++.+..+.-.|....++..-=..++=.+.+..++++-+.+.++
T Consensus 186 DgviTPAISVLSAVeGL~v~~p~l~~~-~Vv~is~~ILv~LF~iQ~~GT~kVg~~FgPIm~~Wf~~i~~iGiyni~~~~p 264 (779)
T PLN00150 186 DGILTPSISVLSAVVGIKAASSGLDTN-LVTIISCVILVILFSLQRFGTHKVSFLFAPIFLCWFFSLALIGCYNIIKWDK 264 (779)
T ss_pred ccccccchhhhhhhccccccCCCCCCC-eehhhHHHHHHHHHHHHhccchhhhhhhccHHHHHHHHHHHHHHHHHHhcCH
Confidence 355555556666666666555554332 2234555666677777777776666544222222223334444444444444
Q ss_pred Cccccccc-------cccchH--HHHHHHHhhhhhHHHhhh-hhccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHhcc
Q 012131 192 WRWCMVDL-------KNVNWG--LYLNTLFWNLNYWDSIST-LVGEVEDPGKTLPRALFYALILVVFAYFFPLLIGTGAA 261 (470)
Q Consensus 192 ~~~~~~~~-------~~~~~~--~~~~~~~~~~~G~e~~~~-~~~E~k~P~k~ip~ai~~~~~~~~~~y~l~~~~~~~~~ 261 (470)
.-+...++ ..++.. -.+.+++.+.+|-|+.-. ++.=-| |.+.++-..-+.=+.++--+..-+.+..-
T Consensus 265 ~Vl~AlnP~y~~~ff~~~~~~g~~~LG~V~L~iTGaEALyADlGHFg~---~~Iriaw~~~V~P~LlL~Y~GQaA~ll~~ 341 (779)
T PLN00150 265 SVFLAFNPLYIVSFFIRNGRQGWESLGGIVLCMTGTEAMFADLGHFTV---KSMQIAFTSLVYPCLLLTYLGQAAYLVKH 341 (779)
T ss_pred HHHhhcCHHHHHHHHHhCCCceEEEecceeeeecchhhhhccccCCCc---cceeeeehhhHHHHHHHHHcchHHHHhcC
Confidence 33322221 111222 234556789999997633 333333 33433322111111111111222222211
Q ss_pred CCCcccccccHHHHHHHHhcchhHHHHHHHHHHHHhHHHHHHHhhhhhHHHHhhhhcCCCchh-hhhcC-CC-C---CCh
Q 012131 262 PVHRELWSDGYFSVIAKLIGGVWLRTWIQGASAVSNMGMFIAEMSSDSFQLLGMAERGMLPEI-FARRS-QY-G---TPL 335 (470)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~~-~~~~~-r~-~---~P~ 335 (470)
| +...+|+- ...++++.+-+.+++.++.+-+..+.+.++--+..+.-+-|.+|+. .-+.+ |. + .|.
T Consensus 342 p----~~~~npFf----~~iP~~~~~P~~vlAtlAtIIASQA~ISg~FSi~~Qai~Lg~fPrvkI~hTS~~~~GQIYIP~ 413 (779)
T PLN00150 342 M----EDVNDPFY----RSLPKPIYWPIFVLATCSAMIASQAMISATFSIVKQAMALGCFPRVKIVHTSNKVHGQVYIPE 413 (779)
T ss_pred c----ccccCcHH----HhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEecCcccCCceeeHH
Confidence 1 12233432 2233444444444444443333333333333344455566899952 33333 22 2 232
Q ss_pred HH-HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 012131 336 VG-ILFSASGVILLSWLSFQEIVAAENFLYCFAMIM 370 (470)
Q Consensus 336 ~a-i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 370 (470)
.- ++..+++...+.+-+.+.+.+++.++.....++
T Consensus 414 vNw~Lmv~~i~vv~~F~~s~~l~~AYGiAV~~vM~i 449 (779)
T PLN00150 414 INWILMVLCLVITAGFRDTDEIGNAYGIAVVGVMII 449 (779)
T ss_pred HHHHHHHHHHhheEEecChHHHHHHhhhheehhhHH
Confidence 21 222222223334446777888777765444433
|
|
| >PLN00151 potassium transporter; Provisional | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.4 Score=50.79 Aligned_cols=248 Identities=12% Similarity=0.058 Sum_probs=109.6
Q ss_pred HHhhhHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Q 012131 112 SGVIDNALYPVLFLDYLKSAIPALEGGFPRIVAVLLLTTALTYMNYRGLTIVGWVAIVLGVFSLVPFALMGLIAIPRLKP 191 (470)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~i~~~~~i~~~~~~~i~~~~~~~~ 191 (470)
..+.+.+.....+.+-++...|....+ ....+++++++.+..+.-+|....++..-=..++=.+.+..++++-+.+.++
T Consensus 246 DGvlTPAISVLSAVeGL~v~~p~l~~~-~VV~Is~~ILv~LF~~Q~~GT~kVg~~FgPImllWFl~i~~iGiynI~~~~p 324 (852)
T PLN00151 246 DGVLTPAMSVMSAVSGLKVGVPGFGQD-AVVMISVAFLVILFSVQRFGTSKVGFAFGPALALWFCSLGGIGIYNLVKYDS 324 (852)
T ss_pred ccccccchhhhhhhccccccCCcCCCC-eehhHHHHHHHHHHHHHhccchhhhhhhccHHHHHHHHHHHHHHHHHHhcCH
Confidence 355555566666666666555554332 2344566666777777777876666544222222223334444444444444
Q ss_pred Ccccccccc-------ccchH--HHHHHHHhhhhhHHHhhh-hhccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHhcc
Q 012131 192 WRWCMVDLK-------NVNWG--LYLNTLFWNLNYWDSIST-LVGEVEDPGKTLPRALFYALILVVFAYFFPLLIGTGAA 261 (470)
Q Consensus 192 ~~~~~~~~~-------~~~~~--~~~~~~~~~~~G~e~~~~-~~~E~k~P~k~ip~ai~~~~~~~~~~y~l~~~~~~~~~ 261 (470)
.-+...++. .++.. -.+.+++.+.+|-|+.-. ++.=-+ |.+..|-..-+.=+.++--+.+-+.+.--
T Consensus 325 ~Vl~AlnP~Y~~~Ff~~~~~~gw~~LGgVvLciTGaEALfADLGHFg~---~sIqiaw~~~V~P~LlL~Y~GQaA~L~~~ 401 (852)
T PLN00151 325 SVFRAFNPVYIYYFFKRNSTKAWSALGGCVLCATGSEAMFADLGYFSV---RSIQLAFTCLVLPCLLLAYMGQAAYLMKN 401 (852)
T ss_pred HHHhhhCHHHHHHHHHhCCCceEEEecceeeeeccchhhhcccCCCCc---cceeeeehhhHHHHHHHHHcchHHHHhcC
Confidence 333222210 11111 234556788999997633 333233 33333322211111111111222222211
Q ss_pred CCCcccccccHHHHHHHHhcchhHHHHHHHHHHHHhHHHHHHHhhhhhHHHHhhhhcCCCchh-hhhcC-C-CC---CCh
Q 012131 262 PVHRELWSDGYFSVIAKLIGGVWLRTWIQGASAVSNMGMFIAEMSSDSFQLLGMAERGMLPEI-FARRS-Q-YG---TPL 335 (470)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~~-~~~~~-r-~~---~P~ 335 (470)
| +...+|+- ...++++.+-+.+++.++.+-+..+.+.++--+..+.-+-|.+|+. .-+.+ + ++ .|.
T Consensus 402 p----~~~~npFy----~svP~~~~wP~~vlAtlAaIIASQA~ISgtFSii~Qai~Lg~fPRvkIvHTS~~~~GQIYIP~ 473 (852)
T PLN00151 402 P----DSAEQIFF----SSVPSSLFWPVFLIANLAALIASRAMTTATFSCIKQSMALGCFPRLKIIHTSRKFMGQIYIPV 473 (852)
T ss_pred c----ccccCcHH----HhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEeCCCccCCceeeHH
Confidence 1 12233432 2233444444444444433333233333333334444566899952 33333 2 22 232
Q ss_pred HH-HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 012131 336 VG-ILFSASGVILLSWLSFQEIVAAENFLYCFAMIME 371 (470)
Q Consensus 336 ~a-i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 371 (470)
.- ++..+++...+.+-+.+.+.+++.++.....+++
T Consensus 474 vNw~Lmv~~i~v~l~F~~s~~l~~AYGiAV~~vM~iT 510 (852)
T PLN00151 474 INWFLLVMCLVVVCSFRSITDIGNAYGIAEVGVMMVS 510 (852)
T ss_pred HHHHHHHHHHhheeeecCHHHHHHHhhhhhhhhhhHH
Confidence 22 2222333333444467778887777655444333
|
|
| >PRK09950 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=96.09 E-value=2 Score=43.87 Aligned_cols=71 Identities=14% Similarity=0.109 Sum_probs=34.1
Q ss_pred ChHHHHHHHHHHHHHhhhHH----HHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHhhhh-HHHHHHHHH
Q 012131 99 PHWGFQQGWMKWLSGVIDNA----LYPVLFLDYLKSAIPALEGGFPRIVAVLLLTTALTYMNYRGL-TIVGWVAIV 169 (470)
Q Consensus 99 ~~~g~~~g~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~g~-~~~~~~~~i 169 (470)
+.+|...-....++.+...+ .......+-++.+++...+...+..+..++..+++.-.+.|+ |-.++..++
T Consensus 183 g~~G~~IDil~v~atv~GvatSLGlg~~qi~~gl~~l~Gi~~~~~~~~~ii~vi~~if~~S~~~Gl~kGIk~LS~~ 258 (506)
T PRK09950 183 GPWGRLVDLMFLIATVGALTISLVVTAATFTRGLSALTGLPNNFTVQAFVILLSGVIFCLSSYIGIDNGLQRLSKM 258 (506)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 34565555555554444433 344444555555554322323334444455555666666665 334444433
|
|
| >KOG2466 consensus Uridine permease/thiamine transporter/allantoin transport [Nucleotide transport and metabolism; Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.60 E-value=5.4 Score=39.78 Aligned_cols=177 Identities=11% Similarity=0.096 Sum_probs=81.5
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC--ccc---cccccccchHHHHHHHHhhhhhHHHhh
Q 012131 148 LTTALTYMNYRGLTIVGWVAIVLGVFSLVPFALMGLIAIPRLKPW--RWC---MVDLKNVNWGLYLNTLFWNLNYWDSIS 222 (470)
Q Consensus 148 ~~~~~~~~n~~g~~~~~~~~~i~~~~~i~~~~~~~i~~~~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~~~G~e~~~ 222 (470)
+-++...+-+++.....++...-.++.......+.+..+.+.|.. -.. ........|. ++.++...+.++....
T Consensus 193 Fwv~s~~~~~~~p~~ir~lf~~ka~~t~fA~~g~LIw~l~kAhG~G~l~~~~st~~gs~~aWa-~~~~i~~~~~~fstl~ 271 (572)
T KOG2466|consen 193 FWVASLPFYWFPPYKIRHLFTWKAVLTPFAAFGFLIWLLKKAHGLGHLFDSKSTVSGSAHAWA-FVRSIMSCIANFSTLI 271 (572)
T ss_pred HHHHhhheeeccHHHhhhHHHHHHhhhHHHHHHHHHHHHHhcCCccccccCCCcccccchhHH-HHHHHHHHHhccchhh
Confidence 333344444556666666666666666556666666666554431 111 1112222333 3334556666665444
Q ss_pred hhhccccCCCCchhHHHHHHHHHHHH-HHHHHHHHHHhccCCCc---c--cccccHHHHHHHHh-------cchhHHHHH
Q 012131 223 TLVGEVEDPGKTLPRALFYALILVVF-AYFFPLLIGTGAAPVHR---E--LWSDGYFSVIAKLI-------GGVWLRTWI 289 (470)
Q Consensus 223 ~~~~E~k~P~k~ip~ai~~~~~~~~~-~y~l~~~~~~~~~~~~~---~--~~~~~~~~~~~~~~-------~~~~~~~~~ 289 (470)
.-..|..+=.|+ |.+..++-+++.. .+.+..+ .+++.... + ..--+|+..+ ++. +..++..++
T Consensus 272 ~N~pDFsRF~ks-p~a~~~~Ql~alp~~~~l~~l--iGVlv~sa~~~iYG~~~W~Pldil-~~~l~~~y~~G~RAgvFfi 347 (572)
T KOG2466|consen 272 VNAPDFSRFAKS-PNAIWWGQLIALPLPFGLTPL--IGVLVTSASKIIYGTNYWSPLDIL-NQWLDTNYSAGARAGVFFI 347 (572)
T ss_pred ccCchhHhhcCC-CCccchhhhhhhhhhhhhhhh--eeeEehhhhhhhhcccccCHHHHH-HHHhccccccccchhhhHH
Confidence 333333222222 3344444433222 2222221 11111111 1 1123454333 332 344677788
Q ss_pred HHHHHHHhHHHHHHHhhhhhHHHHhhhhcCCCchhhhhcCCCCCCh
Q 012131 290 QGASAVSNMGMFIAEMSSDSFQLLGMAERGMLPEIFARRSQYGTPL 335 (470)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~~~~~~~r~~~P~ 335 (470)
..+.++++++..++.=..+ -++...+.+||++.- |++.-.
T Consensus 348 ~~~f~laql~~NISan~va----agnDl~~L~PkyinI--rRG~~~ 387 (572)
T KOG2466|consen 348 GFGFALAQLGTNISANSVA----AGNDLSALLPKYINI--RRGALI 387 (572)
T ss_pred HHHHHHHHHhcchhccccc----cchhhHhhCcceEEe--cccHHH
Confidence 8888888888766532111 123344788976533 665433
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.55 E-value=0.59 Score=45.95 Aligned_cols=144 Identities=10% Similarity=-0.059 Sum_probs=66.6
Q ss_pred hHHHHHHHhhhhhHHHHhhhhcCCCchhhhhcCCCCCChHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHH
Q 012131 297 NMGMFIAEMSSDSFQLLGMAERGMLPEIFARRSQYGTPLVGILFSASGVILLSWLS-FQEIVAAENFLYCFAMIMEFIAF 375 (470)
Q Consensus 297 ~~~~~~~~~~~~sR~l~~~a~d~~lP~~~~~~~r~~~P~~ai~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~ 375 (470)
.+++.....++.|+.+.++=-||.=||.|- -..+++++++.+++.+.+ ...+..+..+.....-.--.-|.
T Consensus 68 ~i~s~f~i~YG~sKf~~G~~sDr~npr~fm--------~~gLilsai~nil~Gfs~s~~~~~~l~~lng~fQg~Gwpp~~ 139 (448)
T COG2271 68 ILGSAFSITYGVSKFVMGVLSDRSNPRYFM--------AFGLILSAIVNILFGFSPSLFLFAVLWVLNGWFQGMGWPPCA 139 (448)
T ss_pred HHHHHHHHHHHHHHHHhhhhcccCCCceee--------hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCcHHH
Confidence 444555556777888888777766553322 224555555555555443 11111111111111111111233
Q ss_pred HHHHhhCCCCCCCcccCCchhhHHHhhhhhHHHH--HHHHHhccchHHHHHHHHHHHhhhhHHHHHHHhhccccc
Q 012131 376 VKLRMQYPEAIRPYKVPLGTVGAILLCIPPTLLI--LVVLALASPKVMAISVIAVLIGFFIQPCMTYAEKRQWFR 448 (470)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 448 (470)
-.+.+-.++.+|..+...+....++-+.+..... .+.....++....+.-..+.+.+.++.+.+-+++.+...
T Consensus 140 ~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~~~~~w~~~f~~pgiiaiival~~~~~~rd~Pqs~G 214 (448)
T COG2271 140 RTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAFHGGWRAAFYFPGIIAIIVALILLFLLRDRPQSEG 214 (448)
T ss_pred HHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhCCCccccC
Confidence 3333334444554444444334444333333333 333333466666666666666666666666555554433
|
|
| >PF00209 SNF: Sodium:neurotransmitter symporter family; InterPro: IPR000175 Neurotransmitter transport systems are integral to the release, re-uptake and recycling of neurotransmitters at synapses | Back alignment and domain information |
|---|
Probab=93.57 E-value=10 Score=39.25 Aligned_cols=52 Identities=19% Similarity=0.228 Sum_probs=34.0
Q ss_pred hhhHHHhHhhhhcc--cccchhhHHhhhChHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012131 27 VIPLVFLIFYEVSG--GPFGVEDSVMAAGPLLALIGFLFFPFIWSIPEALITAEMG 80 (470)
Q Consensus 27 ~~~~~~~~~~~v~g--g~~~~~~~~~~~g~~~~~~~~ii~~~~~~~~~al~~~el~ 80 (470)
..+.....+|..+| .+.-.|+...+-|+...++.+++..+...+|..+ .|++
T Consensus 7 ~~~~~l~~~g~~vglgn~wrfp~~~~~~gG~~Fli~y~~~~~~~giP~~~--lE~~ 60 (523)
T PF00209_consen 7 KIGFILACIGYAVGLGNIWRFPYLCYENGGGAFLIPYLLFLLLVGIPLLY--LELA 60 (523)
T ss_dssp HHHHHHHHHHHHSSHHHHTHHHHHHHHTTTHHHHHHHHHHHHHTHHHHHH--HHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccc--cccc
Confidence 34455555555556 3566788888766556778888877666777655 5555
|
High affinity transport proteins found in the plasma membrane of presynaptic nerve terminals and glial cells are responsible for the removal from the extracellular space of released-transmitters, thereby terminating their actions []. Plasma membrane neurotransmitter transporters fall into two structurally and mechanistically distinct families. The majority of the transporters constitute an extensive family of homologous proteins that derive energy from the co-transport of Na+ and Cl-, in order to transport neurotransmitter molecules into the cell against their concentration gradient. The family has a common structure of 12 presumed transmembrane helices and includes carriers for gamma-aminobutyric acid (GABA), noradrenaline/adrenaline, dopamine, serotonin, proline, glycine, choline, betaine and taurine. They are structurally distinct from the second more-restricted family of plasma membrane transporters, which are responsible for excitatory amino acid transport. The latter couple glutamate and aspartate uptake to the cotransport of Na+ and the counter-transport of K+, with no apparent dependence on Cl- []. In addition, both of these transporter families are distinct from the vesicular neurotransmitter transporters [, ]. Sequence analysis of the Na+/Cl- neurotransmitter superfamily reveals that it can be divided into four subfamilies, these being transporters for monoamines, the amino acids proline and glycine, GABA, and a group of orphan transporters [].; GO: 0005328 neurotransmitter:sodium symporter activity, 0006836 neurotransmitter transport, 0016021 integral to membrane; PDB: 2QEI_A 3F3C_A 3USP_A 3USK_A 3TU0_A 3GWW_A 3TT3_A 3F4J_A 3USJ_B 3GJC_B .... |
| >PRK09928 choline transport protein BetT; Provisional | Back alignment and domain information |
|---|
Probab=93.39 E-value=12 Score=39.50 Aligned_cols=97 Identities=10% Similarity=0.020 Sum_probs=42.9
Q ss_pred HHHhhccCcc--CCchhHhHHHhhCChHHHHHHHHHHHHHhhhHH----HHHHHHHHHHHHhccccCCchHHHHHHHHHH
Q 012131 76 TAEMGTMFPE--NGGYVVWVASALGPHWGFQQGWMKWLSGVIDNA----LYPVLFLDYLKSAIPALEGGFPRIVAVLLLT 149 (470)
Q Consensus 76 ~~el~~~~p~--~GG~y~~~~~~~g~~~g~~~g~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (470)
|.-.-+..|- +...|--..+.....+|...-....++.++..+ ........-++.+++.-.+...+..+.+++.
T Consensus 165 Yf~yr~~~pl~issal~pllG~ri~G~~G~~IDi~av~~tvfGiaTSLGlGv~qi~~GL~~lfGi~~~~~~q~~ii~vi~ 244 (679)
T PRK09928 165 YFSYRYNLPLTIRSALYPIFGKRINGPIGHSVDIAAVIGTIFGIATTLGIGVVQLNYGLSVLFDIPESLAAQAALIALSV 244 (679)
T ss_pred HHhhcCCCCCchhHhhhhhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHH
Confidence 3444455553 233444333222234555555555554444433 3334444455555543222233333344444
Q ss_pred HHHHHHHhhhh----HHHHHHHHHHHH
Q 012131 150 TALTYMNYRGL----TIVGWVAIVLGV 172 (470)
Q Consensus 150 ~~~~~~n~~g~----~~~~~~~~i~~~ 172 (470)
.+++.-...|+ |....+|..+.+
T Consensus 245 ~i~~~S~~sGl~KGIk~LS~lN~~La~ 271 (679)
T PRK09928 245 IIATISVTSGVNKGIRVLSELNVLLAL 271 (679)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555554 444445544433
|
|
| >COG3158 Kup K+ transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.34 E-value=6.4 Score=40.02 Aligned_cols=287 Identities=17% Similarity=0.179 Sum_probs=125.7
Q ss_pred HHHHHhhccCcc--CCchhHhH---HHhhCChH------HHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccccCCchHHH
Q 012131 74 LITAEMGTMFPE--NGGYVVWV---ASALGPHW------GFQQGWMKWLSGVIDNALYPVLFLDYLKSAIPALEGGFPRI 142 (470)
Q Consensus 74 l~~~el~~~~p~--~GG~y~~~---~~~~g~~~------g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (470)
.=|.-+.-+-.+ .||...-. ++..++.. |.+-+-.+.-..+.+.+.....+.|-+...-|.++. ...
T Consensus 72 iKYv~~vlRADN~GEGGilsL~aL~~~~~~~~~~~l~~~g~iGaalf~GD~vITPAiSVlSAvEGL~iv~p~~~~--~Vv 149 (627)
T COG3158 72 IKYVLFVLRADNNGEGGILSLMALARRAAPRRTALLIILGLIGAALFYGDAVITPAISVLSAVEGLEIVTPALDP--YVV 149 (627)
T ss_pred HhhheeEEecCCCCCchhhhHHHHHHhhcCCCchhhhhHHHHhHHHHhcccccchhHHHHHHhccccccCccccC--ccH
Confidence 334555555444 47877654 44444332 333333444456666777777777766665555432 334
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcc--CCCccccccc-------cccchHHH--HHHH
Q 012131 143 VAVLLLTTALTYMNYRGLTIVGWVAIVLGVFSLVPFALMGLIAIPRL--KPWRWCMVDL-------KNVNWGLY--LNTL 211 (470)
Q Consensus 143 ~~~~~~~~~~~~~n~~g~~~~~~~~~i~~~~~i~~~~~~~i~~~~~~--~~~~~~~~~~-------~~~~~~~~--~~~~ 211 (470)
.++.++++.+..+...|....+|+. .-+.++=++.++..++.+. +++-....++ ...++.++ +.++
T Consensus 150 pitl~IL~~LF~iQ~~GT~~Vg~~F---GPVm~lWF~~l~~~Gl~~i~~~p~IL~AiNP~yAi~fl~~~~~~gf~vLGaV 226 (627)
T COG3158 150 PITLIILVLLFLIQRFGTGRVGKLF---GPVMLLWFLALAVLGLINIIDDPEILRAINPYYAVHFLLEEGFVGFFVLGAV 226 (627)
T ss_pred HHHHHHHHHHHHHhcccchhhhhhh---ccHHHHHHHHHHHHHHHHHhcCHHHHHHhChHHHHHHHHhCCceEEEEeeee
Confidence 4555566666677777776666543 2222222223333333221 1111111110 01222222 2455
Q ss_pred HhhhhhHHHhhhhhccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHhccCCCcccccccHHHHHHHHhcchhHHHHHHH
Q 012131 212 FWNLNYWDSISTLVGEVEDPGKTLPRALFYALILVVFAYFFPLLIGTGAAPVHRELWSDGYFSVIAKLIGGVWLRTWIQG 291 (470)
Q Consensus 212 ~~~~~G~e~~~~~~~E~k~P~k~ip~ai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (470)
+.+.+|-|+.-.--+..- ||.+-+|=. .+..=-++.+++-.+..=-++.+...+|+..+ .+.|...-+.+
T Consensus 227 fLavTGaEALYADmGHfG--r~pI~~AWf----~vv~P~L~LNY~GQGA~vL~~p~a~~npFF~~----~P~~aliP~vi 296 (627)
T COG3158 227 FLAVTGAEALYADMGHFG--RKPIRVAWF----FVVLPCLLLNYFGQGALLLSNPEAIGNPFFLL----APDWALIPLVI 296 (627)
T ss_pred eeeeccHHHHHhhccccC--CccHHHHHH----HHHHHHHHHHHccccceeccCcccccCcHHHh----ChhhHHHHHHH
Confidence 678899997643333332 455543322 11111222233222222222223344454332 22332221222
Q ss_pred HHHHHhHHHHHHHhhhhhHHHHhhhhcCCCchh-hhhcC-C-CC---CChHH-HHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 012131 292 ASAVSNMGMFIAEMSSDSFQLLGMAERGMLPEI-FARRS-Q-YG---TPLVG-ILFSASGVILLSWLSFQEIVAAENFLY 364 (470)
Q Consensus 292 ~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~~-~~~~~-r-~~---~P~~a-i~~~~~~~~~~~~~~~~~l~~~~~~~~ 364 (470)
.+..+..-+..+.+.++--+..+.-|-|.+|+. ..+.+ + .+ .|..- ++..+++..++.+-+-+.+.+++++..
T Consensus 297 LAT~ATVIASQAvISGaFSLtrQAi~Lg~lPrm~I~~TSe~~~GQIYiP~VN~~L~~~V~~~vl~F~~S~~LAaAYGiAV 376 (627)
T COG3158 297 LATAATVIASQAVISGAFSLTRQAIRLGYLPRMRIRHTSETESGQIYIPAVNWLLLVAVVFVVLGFGSSSNLAAAYGIAV 376 (627)
T ss_pred HHHHHHHHHHHHHHhhHhHHHHHHHHhCCCCceEEEecCCcccceEEehHHHHHHHHHHhheeeEecChHHHHHhhChhe
Confidence 222221111111122221222244566899953 33333 2 12 34433 333333444445556777887777766
Q ss_pred HHHHHHHHHHH
Q 012131 365 CFAMIMEFIAF 375 (470)
Q Consensus 365 ~~~~~~~~~~~ 375 (470)
....+++.+-+
T Consensus 377 TgtM~iTt~L~ 387 (627)
T COG3158 377 TGTMVITTILL 387 (627)
T ss_pred eehhHHHHHHH
Confidence 55555554433
|
|
| >KOG4303 consensus Vesicular inhibitory amino acid transporter [Amino acid transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.76 E-value=6.6 Score=37.40 Aligned_cols=229 Identities=16% Similarity=0.185 Sum_probs=127.0
Q ss_pred cccccccchhhHHHhHhhhhcccc--cchhhHHhhhChHHHHHHHHHHHHHHHHHHHH----HHHHhhc---cCccCCch
Q 012131 19 LERFQKVSVIPLVFLIFYEVSGGP--FGVEDSVMAAGPLLALIGFLFFPFIWSIPEAL----ITAEMGT---MFPENGGY 89 (470)
Q Consensus 19 ~~~~r~l~~~~~~~~~~~~v~gg~--~~~~~~~~~~g~~~~~~~~ii~~~~~~~~~al----~~~el~~---~~p~~GG~ 89 (470)
.+.+-|++-|++. ..+.+-+-|. .++|..+-.+|- +.+.+.+-.+.+ +.-++- |..|=.. ..... -.
T Consensus 111 Ge~~~kI~a~qAa-WNVTNAIQGMFivgLP~AvlhGGy-w~i~amvg~A~v-CcyTGk~Li~CLYE~~~dGevVrvR-ds 186 (524)
T KOG4303|consen 111 GEASEKISALQAA-WNVTNAIQGMFIVGLPIAVLHGGY-WSIGAMVGVAYV-CCYTGKLLIECLYENGEDGEVVRVR-DS 186 (524)
T ss_pred CCCCCccHHHHHh-hhhhhhhheeeEeccceeeeEcch-hHHHHHHhhhhh-hhccchhhhhhhccCCCCCcEEEee-hh
Confidence 3455678888874 4444444443 456776666665 454555544443 211111 1122220 00001 12
Q ss_pred hHhHHHh-hCChHH-HHHHHHHHHHHhhhHHHHHHHHHHHHHHhccccCCc-hHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 012131 90 VVWVASA-LGPHWG-FQQGWMKWLSGVIDNALYPVLFLDYLKSAIPALEGG-FPRIVAVLLLTTALTYMNYRGLTIVGWV 166 (470)
Q Consensus 90 y~~~~~~-~g~~~g-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~n~~g~~~~~~~ 166 (470)
|.=+.+. ++|.+| ..+..+.......++..+....++.+++.+|...-+ -.|.++.-+.++-+.++ ...|...++
T Consensus 187 YvaIA~~C~~P~lGgr~V~~AQliELlmTCIlYvVv~gdLl~~~fP~~svd~~sWm~i~~a~LLpc~FL--k~Lk~VS~l 264 (524)
T KOG4303|consen 187 YVAIADFCYKPGLGGRWVLAAQLIELLMTCILYVVVAGDLLQSCFPGLSVDKASWMMITSASLLPCSFL--KDLKIVSRL 264 (524)
T ss_pred HHHHHHHhcCCCcchheeeHHHHHHHHHHHHhhhheechhhhccCCCCCccccchhhhhhHHHhhhHHH--HHHHHHHHH
Confidence 4444444 777776 667777777778888888888999999999865332 12223333333333333 356777777
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCccccc--cccccchHHHHHHHHhhhhhHHHhhhhhccccCCCCchhHHHHHHHH
Q 012131 167 AIVLGVFSLVPFALMGLIAIPRLKPWRWCMV--DLKNVNWGLYLNTLFWNLNYWDSISTLVGEVEDPGKTLPRALFYALI 244 (470)
Q Consensus 167 ~~i~~~~~i~~~~~~~i~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~P~k~ip~ai~~~~~ 244 (470)
....++.+++.-+++..+.+.+...-.|... ..+-..+...+..+.|+|+..-..+++-+.+|||.+ +-.-+-|+-+
T Consensus 265 Sf~ct~sH~viN~i~v~YCLs~~~dW~wskv~Fsidi~~fPisvG~iVFsYTSqIFLP~LEGNM~~ps~-Fn~Ml~WsHI 343 (524)
T KOG4303|consen 265 SFFCTISHLVINLIMVLYCLSFVSDWSWSKVTFSIDINTFPISVGMIVFSYTSQIFLPNLEGNMKNPSQ-FNVMLKWSHI 343 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccceeEEEEEEcccCceEEEEEEEeeeceeeccccccccCChhH-heeeeehHHH
Confidence 7777777777666665555544433334322 112222222233345777777778888899999965 3344556666
Q ss_pred HHHHHHHHHH
Q 012131 245 LVVFAYFFPL 254 (470)
Q Consensus 245 ~~~~~y~l~~ 254 (470)
...++=....
T Consensus 344 AAaVfK~~Fg 353 (524)
T KOG4303|consen 344 AAAVFKVVFG 353 (524)
T ss_pred HHHHHHHHHH
Confidence 6666554443
|
|
| >PRK03356 L-carnitine/gamma-butyrobetaine antiporter; Provisional | Back alignment and domain information |
|---|
Probab=92.20 E-value=15 Score=37.55 Aligned_cols=100 Identities=10% Similarity=-0.083 Sum_probs=46.4
Q ss_pred HHHHHHhhccCcc---CCchhHhHH-HhhCChHHHHHHHHHHHHHhhhHHH----HHHHHHHHHHHhccccCCchHHHHH
Q 012131 73 ALITAEMGTMFPE---NGGYVVWVA-SALGPHWGFQQGWMKWLSGVIDNAL----YPVLFLDYLKSAIPALEGGFPRIVA 144 (470)
Q Consensus 73 al~~~el~~~~p~---~GG~y~~~~-~~~g~~~g~~~g~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (470)
++.|....+..|. +...|.... |...+.+|.+.-....++.+...+. .....+.-++.+++..++...+..+
T Consensus 156 a~ay~~y~~~~p~l~iss~~~pllG~~~~~g~~G~~IDil~v~atv~GvatSLGlg~~qi~~gl~~l~Gi~~~~~~~~~i 235 (504)
T PRK03356 156 AFGYFFFVRKMDVIRPSSTLVPLVGEKHAKGLFGTIVDNFYLVALIFAMGTSLGLATPLVTECMQWLFGIPHTLQLDAII 235 (504)
T ss_pred HHHHHHHhcCCCcccHHHHHHHHcCCCcccCchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcCCCCchHHHHHH
Confidence 3334555566663 233333333 1123345666666655555554443 3334444555555432232333333
Q ss_pred HHHHHHHHHHHHhhhh----HHHHHHHHHHHH
Q 012131 145 VLLLTTALTYMNYRGL----TIVGWVAIVLGV 172 (470)
Q Consensus 145 ~~~~~~~~~~~n~~g~----~~~~~~~~i~~~ 172 (470)
..++.+++..-.+.|+ |...+.+..+.+
T Consensus 236 i~~i~~if~~S~~~Gl~kGIk~LS~~N~~la~ 267 (504)
T PRK03356 236 ITCWIILNAICVACGLQKGVRIASDVRSYLSF 267 (504)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555554 455555554443
|
|
| >TIGR00842 bcct choline/carnitine/betaine transport | Back alignment and domain information |
|---|
Probab=91.80 E-value=16 Score=36.90 Aligned_cols=72 Identities=13% Similarity=0.082 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHhh----hHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHhhhh----HHHHHHHHHHHH
Q 012131 101 WGFQQGWMKWLSGVI----DNALYPVLFLDYLKSAIPALEGGFPRIVAVLLLTTALTYMNYRGL----TIVGWVAIVLGV 172 (470)
Q Consensus 101 ~g~~~g~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~g~----~~~~~~~~i~~~ 172 (470)
+|...-....++.++ .........+.-++++++...+...+..+..++..++..-.+.|+ |...+.+..+.+
T Consensus 138 ~g~~ID~l~v~ati~G~atsLGlg~~qi~~gl~~l~gi~~~~~~~~~ii~~i~~~f~~S~~~Gl~kGIk~LS~~n~~l~~ 217 (453)
T TIGR00842 138 IGKAIDIMALVATLFGVATSLGLGAPQINAGLSALFGIPDSFWLQALIILCVTALACISVASGVGKGIKILSNINMALAF 217 (453)
T ss_pred cHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 454444444444333 333444445555555554322323333344444444555555554 444444444333
|
properties inherent to their polypeptide chains. |
| >COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=91.64 E-value=3.4 Score=35.36 Aligned_cols=21 Identities=19% Similarity=0.339 Sum_probs=11.8
Q ss_pred CCCCChH-----HHHHHHHHHHHHHH
Q 012131 330 QYGTPLV-----GILFSASGVILLSW 350 (470)
Q Consensus 330 r~~~P~~-----ai~~~~~~~~~~~~ 350 (470)
++.-|+. ++++.++++++-++
T Consensus 89 kNtdp~lm~lDssLl~lg~~aLlsgi 114 (226)
T COG4858 89 KNTDPWLMWLDSSLLFLGAMALLSGI 114 (226)
T ss_pred cCCCceEEEecccHHHHHHHHHHHHH
Confidence 4555654 56666666654333
|
|
| >COG1292 BetT Choline-glycine betaine transporter [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=91.60 E-value=17 Score=36.96 Aligned_cols=74 Identities=14% Similarity=0.072 Sum_probs=36.5
Q ss_pred ChHHHHHHHHHHHHHhhhHHHHHHHHHH----HHHHhccccCCchHHHHHHHHHHHHHHHHHhhhh----HHHHHHHHHH
Q 012131 99 PHWGFQQGWMKWLSGVIDNALYPVLFLD----YLKSAIPALEGGFPRIVAVLLLTTALTYMNYRGL----TIVGWVAIVL 170 (470)
Q Consensus 99 ~~~g~~~g~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~g~----~~~~~~~~i~ 170 (470)
..+|...-.+.+++.++..+...-..+. -++.++..-++.+.+..+..+..++++.-...|+ |...+.+..+
T Consensus 186 G~~G~~IDi~aiiaTl~GiATsLG~ga~qi~~Gl~~l~gip~~~~~q~~iI~vi~~~~~~S~~sGv~KGIr~LS~~n~~l 265 (537)
T COG1292 186 GPIGHAVDILAIIATLFGIATSLGLGALQLTAGLSYLFGIPNSFAVQAIIIAVITALFTISVWSGLDKGIRVLSNINMVL 265 (537)
T ss_pred CccchhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 4567777777777666665554444333 3444443322333333444444445555555554 4444444443
Q ss_pred HH
Q 012131 171 GV 172 (470)
Q Consensus 171 ~~ 172 (470)
..
T Consensus 266 a~ 267 (537)
T COG1292 266 AF 267 (537)
T ss_pred HH
Confidence 33
|
|
| >COG4145 PanF Na+/panthothenate symporter [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=91.00 E-value=16 Score=35.40 Aligned_cols=226 Identities=12% Similarity=0.061 Sum_probs=114.3
Q ss_pred HHhhccCccCCchhHhHH-HhhCChHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHH
Q 012131 77 AEMGTMFPENGGYVVWVA-SALGPHWGFQQGWMKWLSGVIDNALYPVLFLDYLKSAIPALEGGFPRIVAVLLLTTALTYM 155 (470)
Q Consensus 77 ~el~~~~p~~GG~y~~~~-~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (470)
+.+++++- +=-.-++.+ |.-+++.-++.+....+.....+.+--.+.+..+...... ++..-+.... ..+....
T Consensus 97 ~~~ar~~n-AltI~D~l~~RY~s~fl~~las~~Lifff~~~m~~qfiGgarLlE~~~gi---dY~tgL~ifa-~~V~iYt 171 (473)
T COG4145 97 AILAREYN-ALTINDLLFARYQSRFLVWLASLSLIFFFVGAMTVQFIGGARLLETALGI---DYTTGLLIFA-VSVAIYT 171 (473)
T ss_pred HHHHHHhC-CeeHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHCC---CchhhHHHHH-HHHHHHH
Confidence 34444442 223444444 3457888999999999888888888888888777766542 1122122111 2233334
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh-------------hccCCCccccccccccchHHHHHHHHhhhhhHHHh-
Q 012131 156 NYRGLTIVGWVAIVLGVFSLVPFALMGLIAI-------------PRLKPWRWCMVDLKNVNWGLYLNTLFWNLNYWDSI- 221 (470)
Q Consensus 156 n~~g~~~~~~~~~i~~~~~i~~~~~~~i~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~e~~- 221 (470)
.+-|-|.....-.+=..+.++..+++.+..+ .+.+++-..+++.+. ....-+...+|...|+...
T Consensus 172 ~fGGFRAvvltD~IQG~vmligtv~Lf~~~i~~~GG~~~av~tl~~iDp~lv~P~~~~~-~l~~~Fm~Sfwilv~~gvlg 250 (473)
T COG4145 172 AFGGFRAVVLTDTIQGLVMLIGTVVLFVGVIYAGGGLSNAVETLTTIDPGLVTPQGADD-ILDPPFMASFWILVCFGVLG 250 (473)
T ss_pred hhcceeeeehHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHhCCccccCCCCCcc-cccchHHHHHHHHHHHHHhc
Confidence 4456665554433333333333322222222 112233232333222 1121222234655555422
Q ss_pred -hhh---hccccCCCCchhHHHHHHHHHHHHHHHHHHHH-HHhccCCCcccccccHHHHHHHHhcchhHHHHHHHHHHHH
Q 012131 222 -STL---VGEVEDPGKTLPRALFYALILVVFAYFFPLLI-GTGAAPVHRELWSDGYFSVIAKLIGGVWLRTWIQGASAVS 296 (470)
Q Consensus 222 -~~~---~~E~k~P~k~ip~ai~~~~~~~~~~y~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (470)
++. .-..|| +|.+.++++++..++.++-+.+-.+ ..+-.-..++...|.....++-+..+|....++....+-+
T Consensus 251 lP~t~vr~ia~kD-skaih~gmiigt~vi~il~~gmhl~G~~graViPdlt~~D~Vip~lalkvlpp~~agifl~apmaA 329 (473)
T COG4145 251 LPHTAVRCIAFKD-SKAIHRGMIIGTIVIAILMLGMHLAGALGRAVIPDLTVVDLVIPTLALKVLPPFAAGIFLAAPMAA 329 (473)
T ss_pred CcHHHHHHHhccc-hhHHhcCcchHHHHHHHHHHHHHHhhhhhhhhcCCCCccchhHHHHHHHhcchHHHHHHHHHHHHH
Confidence 222 223466 5778888888888777665544322 1111111122334445556666777676666666666666
Q ss_pred hHHHHHHHhhhhh
Q 012131 297 NMGMFIAEMSSDS 309 (470)
Q Consensus 297 ~~~~~~~~~~~~s 309 (470)
..++.++.+.-.|
T Consensus 330 iMSTIds~L~~~s 342 (473)
T COG4145 330 IMSTINSQLLQSS 342 (473)
T ss_pred HHHHHHHHHHHHH
Confidence 7777777655433
|
|
| >PF12794 MscS_TM: Mechanosensitive ion channel inner membrane domain 1 | Back alignment and domain information |
|---|
Probab=90.49 E-value=18 Score=35.14 Aligned_cols=38 Identities=24% Similarity=0.390 Sum_probs=25.4
Q ss_pred hhhhhccccCCCCc----hhHHHHHHHHHHHHHHHHHHHHHH
Q 012131 221 ISTLVGEVEDPGKT----LPRALFYALILVVFAYFFPLLIGT 258 (470)
Q Consensus 221 ~~~~~~E~k~P~k~----ip~ai~~~~~~~~~~y~l~~~~~~ 258 (470)
....++++.++++| .||++.++...+...-.+...+..
T Consensus 28 L~~~~~~ig~~~~D~~~~T~~al~~tll~alp~pl~~~~~g~ 69 (340)
T PF12794_consen 28 LERIAKRIGKVRQDSFSHTPRALLLTLLLALPLPLLLLAIGY 69 (340)
T ss_pred HHHHHHHcCCccCCCchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666555 999999998887666555554433
|
|
| >KOG3659 consensus Sodium-neurotransmitter symporter [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=84.63 E-value=53 Score=34.02 Aligned_cols=63 Identities=13% Similarity=0.192 Sum_probs=34.3
Q ss_pred hhHHHhHhhhh--cccccchhhHHhhhChHHHHHHHHHHHHHHHHHHHHHHHHhhcc-CccCCchhHh
Q 012131 28 IPLVFLIFYEV--SGGPFGVEDSVMAAGPLLALIGFLFFPFIWSIPEALITAEMGTM-FPENGGYVVW 92 (470)
Q Consensus 28 ~~~~~~~~~~v--~gg~~~~~~~~~~~g~~~~~~~~ii~~~~~~~~~al~~~el~~~-~p~~GG~y~~ 92 (470)
++...-.+|.. .|-+--.|+.-..-|+...++-+.+..++..+|..+ -||+-- +-+.|..-.|
T Consensus 85 ~eflLa~vgfaV~lgnvWrFpYlC~~nGGgaFlvpY~imli~~GvPLfy--mELaLGQ~~r~g~~gvw 150 (629)
T KOG3659|consen 85 TEFLLAVVGFAVDLGNVWRFPYLCYKNGGGAFLVPYTIMLIVGGVPLFY--MELALGQYHRQGCIGVW 150 (629)
T ss_pred HHHHHHHHHHhhcccccceeeheeeeCCCEeEhHHHHHHHHHhccHHHH--HHHHHHHHhcccchhHH
Confidence 34444334332 334556677766644334566666666555777654 777654 3345555555
|
|
| >PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex | Back alignment and domain information |
|---|
Probab=84.32 E-value=42 Score=32.64 Aligned_cols=99 Identities=14% Similarity=0.054 Sum_probs=56.6
Q ss_pred chhhHHHhHhhhhcc-cccchhhHHhhhChHHHHHHHHHHHHHHHHHHHHHHHHhhccCccCC-chhHhHHHhhCChHHH
Q 012131 26 SVIPLVFLIFYEVSG-GPFGVEDSVMAAGPLLALIGFLFFPFIWSIPEALITAEMGTMFPENG-GYVVWVASALGPHWGF 103 (470)
Q Consensus 26 ~~~~~~~~~~~~v~g-g~~~~~~~~~~~g~~~~~~~~ii~~~~~~~~~al~~~el~~~~p~~G-G~y~~~~~~~g~~~g~ 103 (470)
+.+-+...=+.++.| |...=|.....-|+... +.|++.+-++.= ..-=|..+-.+..+.| +.-..+++.+||+.+.
T Consensus 53 ~~~vlfghhf~sIAGaGPI~GPi~aa~~GwlPa-~lWI~~G~if~G-aVHD~~sl~~SvR~~G~Si~~i~~~~lG~~~~~ 130 (376)
T PF02554_consen 53 NKWVLFGHHFASIAGAGPIVGPILAAQFGWLPA-LLWIVFGCIFAG-AVHDYGSLMASVRHKGKSIGEIAGKYLGKRAKK 130 (376)
T ss_pred chHHhhHHHHHHHhccccchHHHHHHHhcchHH-HHHHHHccHHHH-HHHHHHHHhhhhcCCCccHHHHHHHHHHHHHHH
Confidence 444555555666656 44333333345677645 445544432111 1222344444555555 5566778889999999
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHH
Q 012131 104 QQGWMKWLSGVIDNALYPVLFLD 126 (470)
Q Consensus 104 ~~g~~~~~~~~~~~~~~~~~~~~ 126 (470)
+..+..++..+...+......++
T Consensus 131 lf~~f~~~~lilV~avF~~v~a~ 153 (376)
T PF02554_consen 131 LFLIFIFFLLILVIAVFADVVAN 153 (376)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 98888877766666655544443
|
This family consists of carbon starvation protein CstA a predicted membrane protein. It has been suggested that CstA is involved in peptide utilization [].; GO: 0009267 cellular response to starvation, 0016020 membrane |
| >PRK15049 L-asparagine permease; Provisional | Back alignment and domain information |
|---|
Probab=80.42 E-value=74 Score=32.74 Aligned_cols=46 Identities=11% Similarity=0.010 Sum_probs=19.9
Q ss_pred cCCchhhHHHhhhhhHHHHHHHHHhccchHHHHHHHHHHHhhhhHHH
Q 012131 391 VPLGTVGAILLCIPPTLLILVVLALASPKVMAISVIAVLIGFFIQPC 437 (470)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 437 (470)
.|.......+.++...+.+.+.....++. ......+.++..+.|..
T Consensus 422 ~p~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 467 (499)
T PRK15049 422 APFTSWLTLLFLLSVLVLMAFDYPNGTYT-IAALPIIGILLVIGWFG 467 (499)
T ss_pred ccHHHHHHHHHHHHHHHHHHHcCcchHHH-HHHHHHHHHHHHHHHHH
Confidence 46554444444555555555542323333 23333334444444433
|
|
| >PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues | Back alignment and domain information |
|---|
Probab=80.16 E-value=24 Score=31.50 Aligned_cols=21 Identities=19% Similarity=0.343 Sum_probs=10.4
Q ss_pred HHHHHHHhhhhHHHHHHHhhc
Q 012131 424 SVIAVLIGFFIQPCMTYAEKR 444 (470)
Q Consensus 424 ~~~~~~~g~~~~~~~~~~~~~ 444 (470)
....+++|++.+..+++.++|
T Consensus 180 ~~~~iiig~i~~~~~~~lkkk 200 (206)
T PF06570_consen 180 PWVYIIIGVIAFALRFYLKKK 200 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555544443
|
However, these proteins contain predicted integral membrane proteins (with several transmembrane segments). |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 470 | ||||
| 3ncy_A | 445 | X-Ray Crystal Structure Of An Arginine Agmatine Ant | 1e-09 | ||
| 3lrb_A | 445 | Structure Of E. Coli Adic Length = 445 | 4e-08 | ||
| 3l1l_A | 445 | Structure Of Arg-Bound Escherichia Coli Adic Length | 6e-08 | ||
| 3ob6_A | 445 | Structure Of Adic(N101a) In The Open-To-Out Arg+ Bo | 3e-07 | ||
| 4dji_A | 511 | Structure Of Glutamate-Gaba Antiporter Gadc Length | 7e-07 | ||
| 3gi8_C | 444 | Crystal Structure Of Apct K158a Transporter Bound T | 4e-04 | ||
| 3gi9_C | 444 | Crystal Structure Of Apct Transporter Bound To 7f11 | 5e-04 |
| >pdb|3NCY|A Chain A, X-Ray Crystal Structure Of An Arginine Agmatine Antiporter (Adic) In Complex With A Fab Fragment Length = 445 | Back alignment and structure |
|
| >pdb|3LRB|A Chain A, Structure Of E. Coli Adic Length = 445 | Back alignment and structure |
|
| >pdb|3L1L|A Chain A, Structure Of Arg-Bound Escherichia Coli Adic Length = 445 | Back alignment and structure |
|
| >pdb|3OB6|A Chain A, Structure Of Adic(N101a) In The Open-To-Out Arg+ Bound Conformation Length = 445 | Back alignment and structure |
|
| >pdb|4DJI|A Chain A, Structure Of Glutamate-Gaba Antiporter Gadc Length = 511 | Back alignment and structure |
|
| >pdb|3GI8|C Chain C, Crystal Structure Of Apct K158a Transporter Bound To 7f11 Monoclonal Fab Fragment Length = 444 | Back alignment and structure |
|
| >pdb|3GI9|C Chain C, Crystal Structure Of Apct Transporter Bound To 7f11 Monoclonal Fab Fragment Length = 444 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A Length = 511 | Back alignment and structure |
|---|
Score = 220 bits (563), Expect = 2e-66
Identities = 86/484 (17%), Positives = 174/484 (35%), Gaps = 44/484 (9%)
Query: 24 KVSVIPLVFLIFYEVSGGPFGVEDSVMAAGPLLALI-GFLFFPFIWSIPEALITAEMGTM 82
+++++ + V + A +L+ L +W IP L AEM T+
Sbjct: 12 QLTLLGFFAITA----SMVMAVYEYPTFATSGFSLVFFLLLGGILWFIPVGLCAAEMATV 67
Query: 83 FP-ENGGYVVWVASALGPHWGFQQGWMKWLS---GVIDNALYPVLFLDYLKSAIPALEGG 138
E GG WV++ LGP WGF +L G I + + L Y+ E
Sbjct: 68 DGWEEGGVFAWVSNTLGPRWGFAAISFGYLQIAIGFIPMLYFVLGALSYILKWPALNEDP 127
Query: 139 FPRIVAVLLLTTALTYMNYRGLTIVGWVA-IVLGVFSLVPFALMGLIAIPRLKPWRWCMV 197
+ +A L++ AL + G +A + L+P ++ +A L +
Sbjct: 128 ITKTIAALIILWALALTQFGGTKYTARIAKVGFFAGILLPAFILIALAAIYLHSGAPVAI 187
Query: 198 DLKN---------VNWGLYLNTLFWNLNYWDSISTLVGEVEDPGKTLPRALFYALILVVF 248
++ + V + + ++ +T V E+ +PG+ P A+ ++ +
Sbjct: 188 EMDSKTFFPDFSKVGTLVVFVAFILSYMGVEASATHVNEMSNPGRDYPLAMLLLMVAAIC 247
Query: 249 AYFFPLLIGTGAAPVHRELWSDGYFSVIAKLI-----GGVWLRTWIQGASAVSNMGMFIA 303
L P + S G L+ W I + + +
Sbjct: 248 LSSVGGLSIAMVIPGNEINLSAGVMQTFTVLMSHVAPEIEWTVRVISALLLLGVLAEIAS 307
Query: 304 EMSSDSFQLLGMAERGMLPEIFARRSQYGTPLVGILFSASGVILLS----------WLSF 353
+ S + A++ +LP FA+ ++ G P+ ++ + +SF
Sbjct: 308 WIVGPSRGMYVTAQKNLLPAAFAKMNKNGVPVTLVISQLVITSIALIILTNTGGGNNMSF 367
Query: 354 QEIVAAENFLYCFAMIMEFIAFVKLRMQYPEAIRPYKVPLGTVGAILLCIPPTLLILVVL 413
+A +Y A M FI ++ L +++P+ R + +P G +++ I L ++
Sbjct: 368 LIALALTVVIYLCAYFMLFIGYIVLVLKHPDLKRTFNIPGGKGVKLVVAIVGLLTSIMAF 427
Query: 414 ALA----------SPKVMAISVIAVLIGFFIQPCMTYAEKRQWFRFSMSSDLPDILSASA 463
++ S + ++ + P + YA + + + L I S +A
Sbjct: 428 IVSFLPPDNIQGDSTDMYVELLVVSFLVVLALPFILYAVHDRKGKANTGVTLEPINSQNA 487
Query: 464 DPQH 467
H
Sbjct: 488 PKGH 491
|
| >3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A Length = 445 | Back alignment and structure |
|---|
Score = 148 bits (376), Expect = 4e-40
Identities = 72/401 (17%), Positives = 144/401 (35%), Gaps = 24/401 (5%)
Query: 48 SVMAAGPLLALIGFLFFPFIWSIPEALITAEMGTMFPENGGYVVWVASALGPHWGFQQGW 107
+ +A+ +A+ G+L ++ +++ A+M + P GG + GP G+Q
Sbjct: 33 ANLASTGGIAIYGWLVTIIG-ALGLSMVYAKMSFLDPSPGGSYAYARRCFGPFLGYQTNV 91
Query: 108 MKWLSGVIDNALYPVLFLDYLKSAIPALEGGFPRIVAVLLLTTALTYMNYRGLTIVGWVA 167
+ WL+ I N V+ + YL P L+ + + +++ +N G ++ V
Sbjct: 92 LYWLACWIGNIAMVVIGVGYLSYFFPILKDPWVLTITCVVVLWIFVLLNIVGPKMITRVQ 151
Query: 168 IVLGVFSLVPFALMGLIAIPRLKPWRWCMVDLKNVNWGLY------LNTLFWNLNYWDSI 221
V V +L+P + + + + M G + LN W+ +S
Sbjct: 152 AVATVLALIPIVGIAVFGWFWFRGETY-MAAWNVSGLGTFGAIQSTLNVTLWSFIGVESA 210
Query: 222 STLVGEVEDPGKTLPRALFYALILVVFAYFFPLLIGTGAAPVHRELWSDGYFSVIAKLIG 281
S G V++P + +P A +++ Y G P S F A++
Sbjct: 211 SVAAGVVKNPKRNVPIATIGGVLIAAVCYVLSTTAIMGMIPNAALRVSASPFGDAARMAL 270
Query: 282 GVWLRTWIQGASAVSNMGMFIAEMSSDSFQLLGMAERGMLPEIFARRSQYGTPLVGILFS 341
G + +A +G A+ G+ P IFAR ++ GTP+ G++
Sbjct: 271 GDTAGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAADDGLFPPIFARVNKAGTPVAGLIIV 330
Query: 342 ASGVILLSWL--------SFQEIVAAENFLYCFAMIMEFIAFVKLRMQYPEAIRPYKVPL 393
+ + F + + + A + L + RP
Sbjct: 331 GILMTIFQLSSISPNATKEFGLVSSVSVIFTLVPYLYTCAALLLLGHGHFGKARPA-YLA 389
Query: 394 GTVGAILLCIPPTLLILVVLALASPKVMAISVIAVLIGFFI 434
T A L C + + + K + S + +++ +
Sbjct: 390 VTTIAFLYC-------IWAVVGSGAKEVMWSFVTLMVITAM 423
|
| >3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C Length = 444 | Back alignment and structure |
|---|
Score = 116 bits (292), Expect = 1e-28
Identities = 71/389 (18%), Positives = 143/389 (36%), Gaps = 17/389 (4%)
Query: 52 AGPLLALIGFLFFPFIWSIPEALITAEMGTMFPENGGYVVWVASALGPH-WGFQQGWMKW 110
AG L F+ ++ A ++G N G + ++ A+G + + W
Sbjct: 37 AGRNLPET-FILSGIY-ALLVAYSYTKLGAKIVSNAGPIAFIHKAIGDNIITGALSILLW 94
Query: 111 LSGVIDNALYPVLFLDYLKSAIPALEGGFPRIVAVLLLTTALTYMNYRGLTIVGWVAIVL 170
+S VI AL+ F Y I A F + + + T +N+ G VG +
Sbjct: 95 MSYVISIALFAKGFAGYFLPLINAPINTFNIAITEIGIVAFFTALNFFGSKAVGRAEFFI 154
Query: 171 GVFSLVPFALMGLIAIPRLKPWRWCMVDLKNVNWGLYLN---TLFWNLNYWDSISTLVGE 227
+ L+ L + + P + DL + F + + I+
Sbjct: 155 VLVKLLILGLFIFAGLITIHPSYV-IPDLAPSAVSGMIFASAIFFLSYMGFGVITNASEH 213
Query: 228 VEDPGKTLPRALFYALILVVFAYFFPLLIGTGAAPVHRELWSDGY-FSVIAKLIGGVWLR 286
+E+P K +PRA+F ++++V+F Y + G P+ + + +V AK G
Sbjct: 214 IENPKKNVPRAIFISILIVMFVYVGVAISAIGNLPIDELIKASENALAVAAKPFLGNLGF 273
Query: 287 TWIQGASAVSNMGMFIAEMSSDSFQLLGMAERGMLPEIFARRSQYGTPLVGILFSASGVI 346
I + S A + + +A+ G LPE F R+ + G+ +++ +
Sbjct: 274 LLISIGALFSISSAMNATIYGGANVAYSLAKDGELPEFFERKV-WFKSTEGLYITSALGV 332
Query: 347 LLSWL-SFQEIVAAENFLYCFAMIMEFIAFVKLRMQYPEAIRPYKVPLGTVGAILLCIPP 405
L + L + + + + + ++ + ++ L + V + L
Sbjct: 333 LFALLFNMEGVASITSAVFMVIYLFVILSHYILIDEVGGRKEIVIFSFIVVLGVFLL--- 389
Query: 406 TLLILVVLALASPKVMAISVIAVLIGFFI 434
L+ + + + +IA IG I
Sbjct: 390 ----LLYYQWITNRFVFYGIIATFIGVLI 414
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 470 | |||
| 3l1l_A | 445 | Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC | 100.0 | |
| 3gia_A | 444 | Uncharacterized protein MJ0609; membrane protein, | 100.0 | |
| 4djk_A | 511 | Probable glutamate/gamma-aminobutyrate antiporter; | 100.0 | |
| 2jln_A | 501 | MHP1; hydantoin, transporter, membrane protein, nu | 99.45 | |
| 3dh4_A | 530 | Sodium/glucose cotransporter; membrane protein, sy | 98.07 | |
| 2xq2_A | 593 | Sodium/glucose cotransporter; transport protein, i | 97.81 | |
| 2a65_A | 519 | Leutaa, Na(+):neurotransmitter symporter (SNF fami | 97.62 | |
| 4ain_A | 539 | Glycine betaine transporter BETP; membrane protein | 90.37 | |
| 2wsw_A | 509 | BCCT family betaine/carnitine/choline transporter; | 86.71 |
| >3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-54 Score=433.43 Aligned_cols=415 Identities=18% Similarity=0.250 Sum_probs=351.1
Q ss_pred ccccccchhhHHHhHhhhhcc-cccchhhHHhhhChHHHHHHHHHHHHHHHHHHHHHHHHhhccCccCCchhHhHHHhhC
Q 012131 20 ERFQKVSVIPLVFLIFYEVSG-GPFGVEDSVMAAGPLLALIGFLFFPFIWSIPEALITAEMGTMFPENGGYVVWVASALG 98 (470)
Q Consensus 20 ~~~r~l~~~~~~~~~~~~v~g-g~~~~~~~~~~~g~~~~~~~~ii~~~~~~~~~al~~~el~~~~p~~GG~y~~~~~~~g 98 (470)
++||+++.+++.++.+++++| |++..+..+..+||. .+++|++++++ .++.+++|+|+++++|++||.|+|+++.+|
T Consensus 5 ~~~r~l~~~~~~~l~ig~~iG~Gif~~~~~~~~~G~~-~~~~~li~~~~-~~~~a~~~~el~~~~p~~Gg~y~~~~~~~G 82 (445)
T 3l1l_A 5 ADAHKVGLIPVTLMVSGAIMGSGVFLLPANLASTGGI-AIYGWLVTIIG-ALGLSMVYAKMSFLDPSPGGSYAYARRCFG 82 (445)
T ss_dssp --CCCBCHHHHHHHHHHHHCSSHHHHHHHHHHHHCTH-HHHHHHHHHHH-HHHHHHHHHHHHHHCCCTTTHHHHHHHHSC
T ss_pred CCCCcccHHHHHHHHHHhHHhhhHHhhHHHHHHhhhH-HHHHHHHHHHH-HHHHHHHHHHHHccCCCCCCchhhHHhHcC
Confidence 478899999999999999988 888888777778885 67999999986 888999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 012131 99 PHWGFQQGWMKWLSGVIDNALYPVLFLDYLKSAIPALEGGFPRIVAVLLLTTALTYMNYRGLTIVGWVAIVLGVFSLVPF 178 (470)
Q Consensus 99 ~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~i~~~~~i~~~ 178 (470)
|.+|+..+|.+++.+....+..+..++++++.++|...++++..++++++++++..+|++|+|..++++.+...++++.+
T Consensus 83 ~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~g~~~~~~~~~~~~~~~i~~~ 162 (445)
T 3l1l_A 83 PFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPILKDPWVLTITCVVVLWIFVLLNIVGPKMITRVQAVATVLALIPI 162 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCGGGGSHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccccccHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998888766667788889899999999999999999999999999999888
Q ss_pred HHHHHHHhhccCCCcccc-cccc-c---cchHHHHHHHHhhhhhHHHhhhhhccccCCCCchhHHHHHHHHHHHHHHHHH
Q 012131 179 ALMGLIAIPRLKPWRWCM-VDLK-N---VNWGLYLNTLFWNLNYWDSISTLVGEVEDPGKTLPRALFYALILVVFAYFFP 253 (470)
Q Consensus 179 ~~~~i~~~~~~~~~~~~~-~~~~-~---~~~~~~~~~~~~~~~G~e~~~~~~~E~k~P~k~ip~ai~~~~~~~~~~y~l~ 253 (470)
+++.+.++...+++++.+ .+.. . .++...+...+|+|.|+|.+++++||+|||+|++||+++.+..++.++|++.
T Consensus 163 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~e~k~p~r~ip~a~~~~~~~~~~~y~~~ 242 (445)
T 3l1l_A 163 VGIAVFGWFWFRGETYMAAWNVSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPIATIGGVLIAAVCYVLS 242 (445)
T ss_dssp HHHHHTTSTTCCCCCCCCC-----------HHHHHHHHHHTTTTTTHHHHGGGGBSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhChhhcccccCccCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHH
Confidence 888777766655544421 1111 1 1223333445799999999999999999999999999999999999999999
Q ss_pred HHHHHhccCCCcccccccHHHHHHHHhcchhHHHHHHHHHHHHhHHHHHHHhhhhhHHHHhhhhcCCCchhhhhcCCCCC
Q 012131 254 LLIGTGAAPVHRELWSDGYFSVIAKLIGGVWLRTWIQGASAVSNMGMFIAEMSSDSFQLLGMAERGMLPEIFARRSQYGT 333 (470)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~~~~~~~r~~~ 333 (470)
.+......|.++...++.|+.+++++..++++..++.+..+++.+++.++.+.+.+|.+++|+|||.+|++|+|+||+++
T Consensus 243 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~sR~~~~~a~dg~lP~~~~~~~~~~~ 322 (445)
T 3l1l_A 243 TTAIMGMIPNAALRVSASPFGDAARMALGDTAGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAADDGLFPPIFARVNKAGT 322 (445)
T ss_dssp HHHHHHHSCTTTSCSTTCTHHHHHHHHHCTTHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTSSCGGGGCCCTTCC
T ss_pred HHHHHhcCCHHHHhccCcHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHhcCCCCC
Confidence 99999999998887788899999999988999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHHHHH--------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCcccCCchhhHHHhhhhh
Q 012131 334 PLVGILFSASGVILLSWL--------SFQEIVAAENFLYCFAMIMEFIAFVKLRMQYPEAIRPYKVPLGTVGAILLCIPP 405 (470)
Q Consensus 334 P~~ai~~~~~~~~~~~~~--------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (470)
|++++++..+++.++.+. .++.+.++.++...+.|.+..++++++|+|+| .+ |.|.. .+...+.
T Consensus 323 P~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~~~~~~r~~~~-~~---r~~~~----~~~~~~~ 394 (445)
T 3l1l_A 323 PVAGLIIVGILMTIFQLSSISPNATKEFGLVSSVSVIFTLVPYLYTCAALLLLGHGHF-GK---ARPAY----LAVTTIA 394 (445)
T ss_dssp CHHHHHHHHHHHHHHHHSTTSHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHSSSS-GG---GCTTT----HHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCc-cc---ccchh----HHHHHHH
Confidence 999999999987665543 26788999999999999999999999998876 22 33333 2234445
Q ss_pred HHHHHHHHHhccchHHHHHHHHHHHhhhhHHHHHHHhhc
Q 012131 406 TLLILVVLALASPKVMAISVIAVLIGFFIQPCMTYAEKR 444 (470)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 444 (470)
.+++.+..+..++.....+..+.++|+.+|.+++|++++
T Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~~~~~~~~ 433 (445)
T 3l1l_A 395 FLYCIWAVVGSGAKEVMWSFVTLMVITAMYALNYNRLHK 433 (445)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHSTTCC
T ss_pred HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 556666667778888888899999999988877655443
|
| >3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-51 Score=410.02 Aligned_cols=420 Identities=17% Similarity=0.208 Sum_probs=335.3
Q ss_pred ccccccchhhHHHhHhhhhcc-cccchhh-HHhhhChHHHHHHHHHHHHHHHHHHHHHHHHhhccCccCCchhHhHHHhh
Q 012131 20 ERFQKVSVIPLVFLIFYEVSG-GPFGVED-SVMAAGPLLALIGFLFFPFIWSIPEALITAEMGTMFPENGGYVVWVASAL 97 (470)
Q Consensus 20 ~~~r~l~~~~~~~~~~~~v~g-g~~~~~~-~~~~~g~~~~~~~~ii~~~~~~~~~al~~~el~~~~p~~GG~y~~~~~~~ 97 (470)
++||+++.+++.+++++.++| |++..+. ....+|| ..+++|++++++ .++.+++|+|+++++|++||.|+|+++.+
T Consensus 3 ~~~r~l~~~~~~~l~~g~~iG~gi~~~~~~~~~~~G~-~~~~~~li~~~~-~~~~~~~~~el~~~~P~~Gg~y~~~~~~~ 80 (444)
T 3gia_A 3 LKNKKLSLWEAVSMAVGVMIGASIFSIFGVGAKIAGR-NLPETFILSGIY-ALLVAYSYTKLGAKIVSNAGPIAFIHKAI 80 (444)
T ss_dssp CCCCCBCHHHHHHHHHHHHHHHHTTTSHHHHHHHHGG-GHHHHHHHHHHH-HHHHHHHHHHHHTTCCCTTTHHHHHHHHH
T ss_pred ccCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHH-HHHHHHHHHHHHhhCCCCCcHHHhHHHHh
Confidence 368999999999999999888 7777654 4455888 578999999986 88899999999999999999999999999
Q ss_pred CChH-HHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 012131 98 GPHW-GFQQGWMKWLSGVIDNALYPVLFLDYLKSAIPALEGGFPRIVAVLLLTTALTYMNYRGLTIVGWVAIVLGVFSLV 176 (470)
Q Consensus 98 g~~~-g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~i~~~~~i~ 176 (470)
||++ +...+|.+++.+....+.++..+++|++..++...+++...+.+.++++++..+|++|+|..++++.+...++++
T Consensus 81 G~~~~~g~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~g~~~~~~~~~~~~~~~i~ 160 (444)
T 3gia_A 81 GDNIITGALSILLWMSYVISIALFAKGFAGYFLPLINAPINTFNIAITEIGIVAFFTALNFFGSKAVGRAEFFIVLVKLL 160 (444)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 9973 555689999999999999999999999998876555556667888889999999999999999999999999999
Q ss_pred HHHHHHHHHhhccCCCccccccccccchHHHHHH---HHhhhhhHHHhhhhhccccCCCCchhHHHHHHHHHHHHHHHHH
Q 012131 177 PFALMGLIAIPRLKPWRWCMVDLKNVNWGLYLNT---LFWNLNYWDSISTLVGEVEDPGKTLPRALFYALILVVFAYFFP 253 (470)
Q Consensus 177 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~G~e~~~~~~~E~k~P~k~ip~ai~~~~~~~~~~y~l~ 253 (470)
.++++.+.++...+++++.+. ..+.++.+++.+ .+|+|.|+|.+++++||+|||+|++||++..+..++.++|++.
T Consensus 161 ~~~~~ii~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~a~~G~e~~~~~~~e~k~P~r~ip~ai~~~~~~~~~~y~~~ 239 (444)
T 3gia_A 161 ILGLFIFAGLITIHPSYVIPD-LAPSAVSGMIFASAIFFLSYMGFGVITNASEHIENPKKNVPRAIFISILIVMFVYVGV 239 (444)
T ss_dssp HHHHHHHHHHHHCCGGGTSCC-CSHHHHHHHHHHHHHGGGGGTHHHHHHTTGGGBSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcChhhcCCC-CCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHccCcccchhHHHHHHHHHHHHHHHHH
Confidence 988888887777666665432 223445444433 3699999999999999999999999999999999999999999
Q ss_pred HHHHHhccCCCcccc-cccHHHHHHHHhcchhHHHHHHHHHHHHhHHHHHHHhhhhhHHHHhhhhcCCCchhhhhcCCCC
Q 012131 254 LLIGTGAAPVHRELW-SDGYFSVIAKLIGGVWLRTWIQGASAVSNMGMFIAEMSSDSFQLLGMAERGMLPEIFARRSQYG 332 (470)
Q Consensus 254 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~~~~~~~r~~ 332 (470)
.+......|.++... .+.|+.++.+...++++..++.+..+++.+++.++.+.+.+|.+++|||||.+|++|+|+|| +
T Consensus 240 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~lP~~f~~~~~-~ 318 (444)
T 3gia_A 240 AISAIGNLPIDELIKASENALAVAAKPFLGNLGFLLISIGALFSISSAMNATIYGGANVAYSLAKDGELPEFFERKVW-F 318 (444)
T ss_dssp HHHHHTTSCHHHHHHTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHSSCCSSCCTTSC-C
T ss_pred HHHHHhCCCHHHHhcccchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHhCCCC-C
Confidence 999998888877543 45688888888878888888999999999999999999999999999999999999999985 5
Q ss_pred CChHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCcccCCchhhHHHhhhhhHHHHHH
Q 012131 333 TPLVGILFSASGVILLSWL-SFQEIVAAENFLYCFAMIMEFIAFVKLRMQYPEAIRPYKVPLGTVGAILLCIPPTLLILV 411 (470)
Q Consensus 333 ~P~~ai~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (470)
+|.+++++..++++++.+. +++.+.++.++...+.|.+..++++++|||+|+. | .......+.+........+
T Consensus 319 ~P~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~--~----~~~~~~~~~~~~~~~~~~~ 392 (444)
T 3gia_A 319 KSTEGLYITSALGVLFALLFNMEGVASITSAVFMVIYLFVILSHYILIDEVGGR--K----EIVIFSFIVVLGVFLLLLY 392 (444)
T ss_dssp SCTHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHCCC--H----HHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCc--c----hHHHHHHHHHHHHHHHHHH
Confidence 6999999999988765544 7899999999999999999999999999887542 1 1111111111111111112
Q ss_pred HHHhccchHHHHHHHHHHHhhhhHHHHHHHhhcccccc
Q 012131 412 VLALASPKVMAISVIAVLIGFFIQPCMTYAEKRQWFRF 449 (470)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 449 (470)
.....++..........+.....+..++++++|+..+.
T Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (444)
T 3gia_A 393 YQWITNRFVFYGIIATFIGVLIFEIIYRKVTKRTFSNN 430 (444)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCGG
T ss_pred HHHhcCchHHHHHHHHHHHHHHHHHHHHHhccCCCcCc
Confidence 22223344455555556666666666666665554433
|
| >4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.7e-51 Score=416.84 Aligned_cols=392 Identities=20% Similarity=0.280 Sum_probs=296.5
Q ss_pred ccccccccchhhHHHhHhhhhcccccchhhHHhhhChHHHHHHHHHHHHHHHHHHHHHHHHhhc--cCccCCchhHhHHH
Q 012131 18 KLERFQKVSVIPLVFLIFYEVSGGPFGVEDSVMAAGPLLALIGFLFFPFIWSIPEALITAEMGT--MFPENGGYVVWVAS 95 (470)
Q Consensus 18 ~~~~~r~l~~~~~~~~~~~~v~gg~~~~~~~~~~~g~~~~~~~~ii~~~~~~~~~al~~~el~~--~~p~~GG~y~~~~~ 95 (470)
+++++|+++++++.+++++.++| ++..+. ...+||. .++.++++++++.++.+++|+|+++ ++| +||.|+|+++
T Consensus 6 ~~~~~r~l~~~~~~~l~~~~~ig-~~~~~~-~~~~G~~-~~~~~~i~~~~~~l~~al~~ael~s~~~~P-~GG~y~~~~~ 81 (511)
T 4djk_A 6 QTGKAKQLTLLGFFAITASMVMA-VYEYPT-FATSGFS-LVFFLLLGGILWFIPVGLCAAEMATVDGWE-EGGVFAWVSN 81 (511)
T ss_dssp ------CCCHHHHHHHTGGGGCC-GGGHHH-HHTTTTH-HHHHHHHHHHHTHHHHHHHHHHHHTTSCC----CHHHHHHH
T ss_pred cCccCccccHHHHHHHHHHHHHh-hchhHH-HHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHcccccCC-CCChhhhHHh
Confidence 44588999999999999999876 444444 4557875 4456666666546778999999999 999 9999999999
Q ss_pred hhCChHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh--ccccC-CchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 012131 96 ALGPHWGFQQGWMKWLSGVIDNALYPVLFLDYLKSA--IPALE-GGFPRIVAVLLLTTALTYMNYRGLTIVGWVAIVLGV 172 (470)
Q Consensus 96 ~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~i~~~ 172 (470)
.+||++|+..||.+|+++....+......++++.++ .|... +++...++++++++++..+|++|+|..++++.+...
T Consensus 82 ~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~in~~g~~~~~~~~~~~~~ 161 (511)
T 4djk_A 82 TLGPRWGFAAISFGYLQIAIGFIPMLYFVLGALSYILKWPALNEDPITKTIAALIILWALALTQFGGTKYTARIAKVGFF 161 (511)
T ss_dssp HHCHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHTTTTCGGGTSCSSHHHHHHHHHHHHHHHHHHTCSSSHHHHTHHHHH
T ss_pred hcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccCcHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHH
Confidence 999999999999999999999999988888888777 44443 356678888899999999999999999999999877
Q ss_pred HHHHH-HHHHHHHHhh---ccCCC----ccccc--cccccchHHHHHHHHhhhhhHHHhhhhhccccCCCCchhHHHHHH
Q 012131 173 FSLVP-FALMGLIAIP---RLKPW----RWCMV--DLKNVNWGLYLNTLFWNLNYWDSISTLVGEVEDPGKTLPRALFYA 242 (470)
Q Consensus 173 ~~i~~-~~~~~i~~~~---~~~~~----~~~~~--~~~~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~P~k~ip~ai~~~ 242 (470)
++++. ++++++.++. ..++. ++.+. +..+.+....+...+|+|.|+|.+++++||+|||+|++||+++.+
T Consensus 162 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~G~e~~~~~a~E~k~P~k~ip~ai~~~ 241 (511)
T 4djk_A 162 AGILLPAFILIALAAIYLHSGAPVAIEMDSKTFFPDFSKVGTLVVFVAFILSYMGVEASATHVNEMSNPGRDYPLAMLLL 241 (511)
T ss_dssp HTTHHHHHHHHHHHHHHTC------------CCCCCTTSTTTTTTHHHHHHHHTTGGGGTGGGSSSSCCTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCcccccCcccccCCCcccchHHHHHHHHHHHHhhHHHHHHHHHhccCcccchhHHHHHH
Confidence 64433 3333333332 12111 11111 111122223445568999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhccCCCcccccccH---HHHHHHHhc--chhHHHHHHHHHHHHhHHHHHHHhhhhhHHHHhhhh
Q 012131 243 LILVVFAYFFPLLIGTGAAPVHRELWSDGY---FSVIAKLIG--GVWLRTWIQGASAVSNMGMFIAEMSSDSFQLLGMAE 317 (470)
Q Consensus 243 ~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~ 317 (470)
+.++.++|++..++.....|.++....+.+ +.++.+..+ .++...++.+..+++.+++.++.+.+.+|.++++||
T Consensus 242 ~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~ar 321 (511)
T 4djk_A 242 MVAAICLSSVGGLSIAMVIPGNEINLSAGVMQTFTVLMSHVAPEIEWTVRVISALLLLGVLAEIASWIVGPSRGMYVTAQ 321 (511)
T ss_dssp HHHHHHHHHHHHHHHHTTSCTTSCCSSSTHHHHHHHHHSSSCSSCTTHHHHHHHHHHHHHHHHHHHHTTHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHHHHHeecCHhhccccchHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 999999999999999999998886554432 333333344 467788888999999999999999999999999999
Q ss_pred cCCCchhhhhcCCCCCChHHHHHHHHHHHH-HHHH-h--------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCC
Q 012131 318 RGMLPEIFARRSQYGTPLVGILFSASGVIL-LSWL-S--------FQEIVAAENFLYCFAMIMEFIAFVKLRMQYPEAIR 387 (470)
Q Consensus 318 d~~lP~~~~~~~r~~~P~~ai~~~~~~~~~-~~~~-~--------~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (470)
||.+|++|+|+||+++|++|+++..++..+ +... + ++.+.++.++...++|.+..++++++|+|+|+.+|
T Consensus 322 dg~lP~~~~~~~~~~~P~~ai~~~~~~~~l~~~~~~~~~~~~~~~f~~l~~~~~~~~~~~y~~~~~~~~~~r~~~~~~~~ 401 (511)
T 4djk_A 322 KNLLPAAFAKMNKNGVPVTLVISQLVITSIALIILTNTGGGNNMSFLIALALTVVIYLCAYFMLFIGYIVLVLKHPDLKR 401 (511)
T ss_dssp GGGCSSSCCCCCSSSCCCHHHHHHHHHHHHHHHHHHSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSCCC
T ss_pred CCcccHHHHhcCCCCCcHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 999999999999999999999998544332 2221 2 67889999999999999999999999999998899
Q ss_pred CcccCCchhhHHHhhhhhHHHHHHHH
Q 012131 388 PYKVPLGTVGAILLCIPPTLLILVVL 413 (470)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (470)
|||.|.+.....++.++..+++++..
T Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (511)
T 4djk_A 402 TFNIPGGKGVKLVVAIVGLLTSIMAF 427 (511)
T ss_dssp SCCCSSTTHHHHHHHHHHHHHHHHHH
T ss_pred CeecCCCchHHHHHHHHHHHHHHHHH
Confidence 99999765543433444444444433
|
| >2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A | Back alignment and structure |
|---|
Probab=99.45 E-value=7.6e-11 Score=119.13 Aligned_cols=305 Identities=12% Similarity=0.011 Sum_probs=155.9
Q ss_pred CCCCcccc-ee-eCCCCCcccccccccchhhHHHhHhhhhcc-cccchhhHHhh-hChHHHHHHHHHHHHHHHHHHHHHH
Q 012131 1 MESNNVHY-VQ-LGEDSSPKLERFQKVSVIPLVFLIFYEVSG-GPFGVEDSVMA-AGPLLALIGFLFFPFIWSIPEALIT 76 (470)
Q Consensus 1 m~~~~~~~-~~-~~~~~~~~~~~~r~l~~~~~~~~~~~~v~g-g~~~~~~~~~~-~g~~~~~~~~ii~~~~~~~~~al~~ 76 (470)
|++++.++ +. ++++-++.++++|+.++++...+=++...+ +.+..+..... -+....+++.+++.++.+++ .
T Consensus 1 m~~~~~~~~~~~e~~~i~pvp~~~R~~~~~~~~~~W~g~~~~i~~~~~Ga~~~~GLs~~~a~lai~lG~li~~~~----~ 76 (501)
T 2jln_A 1 MNSTPIEEARSLLNPSNAPTRYAERSVGPFSLAAIWFAMAIQVAIFIAAGQMTSSFQVWQVIVAIAAGCTIAVIL----L 76 (501)
T ss_dssp -------CCCBCCCSTTSCCCGGGCCBCHHHHHHHHHHHHCSTHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHH----H
T ss_pred CCCCCCCCCCccccCCCCCCChhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHH----H
Confidence 55554442 22 233334455677889999998888776544 22323333322 12233455555555543333 3
Q ss_pred HHhhccCccCCchhH-hHHHhhCChHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHH
Q 012131 77 AEMGTMFPENGGYVV-WVASALGPHWGFQQGWMKWLSGVIDNALYPVLFLDYLKSAIPALEGGFPRIVAVLLLTTALTYM 155 (470)
Q Consensus 77 ~el~~~~p~~GG~y~-~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (470)
+-++..-|+.|-.|. ..+..||++.+.+......+..+...+......++.+...+....+..+.++..+++.++...+
T Consensus 77 ~l~~~~G~~~Gl~~~v~~R~~FG~~Gs~i~~ll~~i~~igw~~v~~~~gg~al~~~~~~~~g~~~~~v~~~i~~~l~~~~ 156 (501)
T 2jln_A 77 FFTQSAAIRWGINFTVAARMPFGIRGSLIPITLKALLSLFWFGFQTWLGALALDEITRLLTGFTNLPLWIVIFGAIQVVT 156 (501)
T ss_dssp HHHTHHHHHHCCCHHHHTTTTSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_pred HHHhHHHhhcCCChhhhhHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHH
Confidence 334555555454444 7778899999988888877777776666666666665554421100011344455566677788
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC--Cccccccc--cccchHHHHHHH-HhhhhhHHHhhhhhccccC
Q 012131 156 NYRGLTIVGWVAIVLGVFSLVPFALMGLIAIPRLKP--WRWCMVDL--KNVNWGLYLNTL-FWNLNYWDSISTLVGEVED 230 (470)
Q Consensus 156 n~~g~~~~~~~~~i~~~~~i~~~~~~~i~~~~~~~~--~~~~~~~~--~~~~~~~~~~~~-~~~~~G~e~~~~~~~E~k~ 230 (470)
.+.|.|...+++.+...+.++.++.+.+..+.+.+. .+...... ...++...+... -+...+.-..+.++.+.|+
T Consensus 157 ~~~G~~~i~~~~~~~~p~~~i~~i~~~~~~l~~~g~~~~~~~~~~~~~~~~~f~~ai~~~~~~~~~~~~~~~DysRy~~~ 236 (501)
T 2jln_A 157 TFYGITFIRWMNVFASPVLLAMGVYMVYLMLDGADVSLGEVMSMGGENPGMPFSTAIMIFVGGWIAVVVSIHDIVKECKV 236 (501)
T ss_dssp HTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHTTCCCSSCCSCHHHHHHHHHTTTHHHHTTTHHHHTTBCC
T ss_pred HHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhccCCccchHHHHHHHHHHHHHHHHHHhccCcccccCCC
Confidence 899999999999988877766666665555544332 11111111 111233222221 1222333446778888888
Q ss_pred CCCc-----------hhHHHHHHHHHHHHHHHHHHHHHHhccCCCcccccccHHHHHHHHhcchhH-HHHHH-HHHHHHh
Q 012131 231 PGKT-----------LPRALFYALILVVFAYFFPLLIGTGAAPVHRELWSDGYFSVIAKLIGGVWL-RTWIQ-GASAVSN 297 (470)
Q Consensus 231 P~k~-----------ip~ai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~ 297 (470)
+++. .-++...+..+...+..+........ ....+|...+.+.+.++.. ..+.. +...++.
T Consensus 237 ~~~~~~~~~~~~~~~~~~g~~lG~~i~~~~~~~lG~~~~~~------~~~~dp~~~l~~~l~~~~~~~~~~~~~~~~la~ 310 (501)
T 2jln_A 237 DPNASREGQTKADARYATAQWLGMVPASIIFGFIGAASMVL------VGEWNPVIAITEVVGGVSIPMAILFQVFVLLAT 310 (501)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HSCSCHHHHHHHHHTCCCHHHHHHHHHHHHHHH
T ss_pred CccccccchhhccchHHHHHHHHHHHHHHHHHHHHHHHHHh------ccccCHHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence 7551 22333333333332222222211111 1234566555554444433 45555 5666666
Q ss_pred HHHHHH-HhhhhhHHHHhh
Q 012131 298 MGMFIA-EMSSDSFQLLGM 315 (470)
Q Consensus 298 ~~~~~~-~~~~~sR~l~~~ 315 (470)
+++... .+++.+--+..+
T Consensus 311 i~tn~~~n~ys~~~~l~~~ 329 (501)
T 2jln_A 311 WSTNPAANLLSPAYTLCST 329 (501)
T ss_dssp HTTHHHHHTHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHh
Confidence 665553 555555444443
|
| >3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.07 E-value=0.005 Score=62.33 Aligned_cols=110 Identities=7% Similarity=-0.154 Sum_probs=59.5
Q ss_pred cccccchhhHHHhHhhhhcc--cccchhhHHhhhChHHHHHHHHHHHHHHHHHHHHHHHHhhccCccCCchhHhHHHhhC
Q 012131 21 RFQKVSVIPLVFLIFYEVSG--GPFGVEDSVMAAGPLLALIGFLFFPFIWSIPEALITAEMGTMFPENGGYVVWVASALG 98 (470)
Q Consensus 21 ~~r~l~~~~~~~~~~~~v~g--g~~~~~~~~~~~g~~~~~~~~ii~~~~~~~~~al~~~el~~~~p~~GG~y~~~~~~~g 98 (470)
-.|++++|...+-.+++..+ ...+.+......|-....+.|.. ++. .+..+..+...-++. +.-..+.|.++-||
T Consensus 18 aGR~l~~~~~~~s~~at~~Sa~~~lG~~g~~y~~G~~~~~~~~~~-~~~-~~i~~~~~~p~~~~~-~~~T~~e~l~~Rfg 94 (530)
T 3dh4_A 18 AGKSLPWWAVGASLIAANISAEQFIGMSGSGYSIGLAIASYEWMS-AIT-LIIVGKYFLPIFIEK-GIYTIPEFVEKRFN 94 (530)
T ss_dssp CCSCCCHHHHHHHHHHHHCSHHHHTHHHHHHHHTCGGGHHHHHHH-HHH-HHHHHHHTHHHHHHT-TCCSHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHH-HHH-HHHHHHHHHHHHHHc-CCccHHHHHHHHcC
Confidence 45889998887777666544 34556666555554322222221 111 111233233333332 33578999999999
Q ss_pred ChHHHHHHHHHHHHHhh-hHHHHHHHHHHHHHHhcc
Q 012131 99 PHWGFQQGWMKWLSGVI-DNALYPVLFLDYLKSAIP 133 (470)
Q Consensus 99 ~~~g~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 133 (470)
++...+......+.+.. ..+......+..++..++
T Consensus 95 ~~~~~~~a~~~l~~~~~~~~~~~l~~~~~~~~~~~G 130 (530)
T 3dh4_A 95 KKLKTILAVFWISLYIFVNLTSVLYLGGLALETILG 130 (530)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 98877777655544433 233344444445555553
|
| >2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A | Back alignment and structure |
|---|
Probab=97.81 E-value=0.042 Score=56.35 Aligned_cols=280 Identities=11% Similarity=0.017 Sum_probs=123.1
Q ss_pred ccccchhhHHHhHhhhhcc--cccchhhHHhhhChHHHHHHHHHHHHHHHHHHHHHHHHhhccCccCCchhHhHHHhhCC
Q 012131 22 FQKVSVIPLVFLIFYEVSG--GPFGVEDSVMAAGPLLALIGFLFFPFIWSIPEALITAEMGTMFPENGGYVVWVASALGP 99 (470)
Q Consensus 22 ~r~l~~~~~~~~~~~~v~g--g~~~~~~~~~~~g~~~~~~~~ii~~~~~~~~~al~~~el~~~~p~~GG~y~~~~~~~g~ 99 (470)
.|+++++...+-.+++..+ ...+.+......|-....+.|.. .+. .+..+..+...-++. +.-..+.|.++-||+
T Consensus 48 GR~l~~~~~~~Sl~at~~sa~t~lG~~g~~y~~G~~~~~~~~~~-~~~-~~~~~~~~~p~~~r~-~~~T~~e~l~~Rfg~ 124 (593)
T 2xq2_A 48 GKSLPWWAVGASLIAANISAEQFIGMSGSGYSIGLAIASYEWMS-AIT-LIIVGKYFLPIFIEK-GIYTIPEFVEKRFNK 124 (593)
T ss_dssp ---CCHHHHHHHHHGGGSSHHHHHHHHHHHHHTCGGGGHHHHHH-HHH-HHHHHHTHHHHHHHT-TCCSHHHHHHHHTCH
T ss_pred CCCCCHHHHHHHHHHHHhcHHHHhhHhHHHHHcCHHHHHHHHHH-HHH-HHHHHHHHHHHHHhC-CCCCcHHHHHHHccC
Confidence 5788888666655555433 34455555555554222122211 111 111233333333333 335789999999998
Q ss_pred hHHHHHHHHHHHHHhh-hHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 012131 100 HWGFQQGWMKWLSGVI-DNALYPVLFLDYLKSAIPALEGGFPRIVAVLLLTTALTYMNYRGLTIVGWVAIVLGVFSLVPF 178 (470)
Q Consensus 100 ~~g~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~i~~~~~i~~~ 178 (470)
....+......+.+.. ..+......+..++..++. + .+....+...+...+...-|.|...+...+=.++.++..
T Consensus 125 ~~~~~~ai~~l~~~~~~~~~~~l~~~~~~l~~~~Gi---~-~~~~i~i~~~i~~~Yt~~GGl~av~~TD~iQ~iiml~~~ 200 (593)
T 2xq2_A 125 KLKTILAVFWISLYIFVNLTSVLYLGGLALETILGI---P-LMYSILGLALFALVYSIYGGLSAVVWTDVIQVFFLVLGG 200 (593)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCC---C-HHHHHHHHHHHHHHHHHTTC---CCHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc---c-HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence 8877776655443333 3344444445555555542 1 122222222333444455567765554443333333332
Q ss_pred HHHHHHHhhc----------------cCCCccccccc-cc------cchHHHHHHH---HhhhhhHH-HhhhhhccccCC
Q 012131 179 ALMGLIAIPR----------------LKPWRWCMVDL-KN------VNWGLYLNTL---FWNLNYWD-SISTLVGEVEDP 231 (470)
Q Consensus 179 ~~~~i~~~~~----------------~~~~~~~~~~~-~~------~~~~~~~~~~---~~~~~G~e-~~~~~~~E~k~P 231 (470)
+++.+....+ .+++.+..... ++ ..+...+... ...+.|.+ ...+-.=+.||+
T Consensus 201 l~v~~~~l~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~q~~~qR~laaks~ 280 (593)
T 2xq2_A 201 FMTTYMAVSFIGGTDGWFAGVSKMVDAAPGHFEMILDQSNPQYMNLPGIAVLIGGLWVANLYYWGFNQYIIQRTLAAKSV 280 (593)
T ss_dssp HHHHHHHHHHHHGGGHHHHHHHHHHHHCGGGSCSSCCSSSGGGGTSCTTHHHHSTHHHHHHHHHTTTCSHHHHHHTTSCH
T ss_pred HHHHHHHHHHcCCchhHHHHHHHHHhhChhhcccccCCCCcccccchHHHHHHHHHHHHHHHhhcCChHHHHHhheeCCH
Confidence 2222221110 01121211110 10 1122222111 11233333 122333467775
Q ss_pred CCchhHHHHHHHHHHHHHHHHHH---HHHHhc-cC--------------CCcccccccHHHHHHHHhcchhHHHHHHHHH
Q 012131 232 GKTLPRALFYALILVVFAYFFPL---LIGTGA-AP--------------VHRELWSDGYFSVIAKLIGGVWLRTWIQGAS 293 (470)
Q Consensus 232 ~k~ip~ai~~~~~~~~~~y~l~~---~~~~~~-~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (470)
|+..|+.+.+.........+.. ++.... .+ ..+....+..+..+. +..++++..++.+..
T Consensus 281 -k~ar~~~~~~~~~~~~~~~~~~~~Gl~a~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~p~l~-~~lp~~l~gl~~a~l 358 (593)
T 2xq2_A 281 -SEAQKGIVFAAFLALIVPFLVVLPGIAAYVITSDPQLMASLGDIAATNLPSAANADKAYPWLT-QFLPVGVKGVVFAAL 358 (593)
T ss_dssp -HHHHHHHHHHHHHTTTHHHHHTHHHHHHHHHHTCHHHHHHHC-----CCCCSTBGGGHHHHHH-HTSCHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccCCCCCChhhHHHHHH-HHcChhHHHHHHHHH
Confidence 7778888777665333333211 111111 00 111223344555556 667777777777777
Q ss_pred HHHhHHHHHHHhhhhhH
Q 012131 294 AVSNMGMFIAEMSSDSF 310 (470)
Q Consensus 294 ~~~~~~~~~~~~~~~sR 310 (470)
+.+..++..+.+.+.|-
T Consensus 359 laA~mST~~s~l~a~st 375 (593)
T 2xq2_A 359 AAAIVSSLASMLNSTAT 375 (593)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 77777777776666554
|
| >2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ... | Back alignment and structure |
|---|
Probab=97.62 E-value=0.068 Score=53.40 Aligned_cols=216 Identities=12% Similarity=0.081 Sum_probs=109.1
Q ss_pred chhhHHHhHhhhhcc--cccchhhHHhhhChHHHHHHHHHHHHHHHHHHHHHHHHhh--c---cCccCCchhHhHHHhhC
Q 012131 26 SVIPLVFLIFYEVSG--GPFGVEDSVMAAGPLLALIGFLFFPFIWSIPEALITAEMG--T---MFPENGGYVVWVASALG 98 (470)
Q Consensus 26 ~~~~~~~~~~~~v~g--g~~~~~~~~~~~g~~~~~~~~ii~~~~~~~~~al~~~el~--~---~~p~~GG~y~~~~~~~g 98 (470)
+..+.+.-.+|..+| -+--.|+...+-|+...++-+++..+...+|.-+ .|++ + +..+.|..-.|- +.-.
T Consensus 10 sr~~FiLa~~G~AVGLGNiWRFPyl~~~nGGgAFlipYli~l~~~GiPll~--~E~alGq~~~~~~r~~~i~a~~-~l~~ 86 (519)
T 2a65_A 10 TRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMW--IEWAMGRYGGAQGHGTTPAIFY-LLWR 86 (519)
T ss_dssp CHHHHHHHHHHHHSSHHHHTHHHHHHHHTTTHHHHHHHHHHHHHTHHHHHH--HHHHHHHHHHTTTCCSHHHHHH-HHSC
T ss_pred cHHHHHHHHHHHHhcccHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHH--HHHHhcccchhccCCCHHHHHH-HhcC
Confidence 345556666666656 4667899998866667888888888766777655 6654 3 122333333332 1111
Q ss_pred ChHHHHHHHHHHHHHhhhHHHHHHHHH--------------------------------HHHHHhccccC------C-ch
Q 012131 99 PHWGFQQGWMKWLSGVIDNALYPVLFL--------------------------------DYLKSAIPALE------G-GF 139 (470)
Q Consensus 99 ~~~g~~~g~~~~~~~~~~~~~~~~~~~--------------------------------~~~~~~~~~~~------~-~~ 139 (470)
+......||...+.......-+....+ ++........+ + ++
T Consensus 87 ~~~~~giG~~~v~~~~~i~~yY~vi~gW~l~Y~~~s~~~~lp~~w~~~~~~~~~~~~~~~~f~~~l~~~~~~~~~g~~~~ 166 (519)
T 2a65_A 87 NRFAKILGVFGLWIPLVVAIYYVYIESWTLGFAIKFLVGLVPEPPPNATDPDSILRPFKEFLYSYIGVPKGDEPILKPSL 166 (519)
T ss_dssp SHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCC--CCHHHHHHHHHHHHHHHHTCCSSSSCBCCCCH
T ss_pred CcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccCCcccccCcHHHHHHHHHCCCCCcccccCccH
Confidence 111111222211111111111111111 12222211100 0 13
Q ss_pred HHHHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHHHHHHHHHHhhccCC-----C---ccccccc----cccchHH
Q 012131 140 PRIVAVLLLTTALTYMNYRGL-TIVGWVAIVLGVFSLVPFALMGLIAIPRLKP-----W---RWCMVDL----KNVNWGL 206 (470)
Q Consensus 140 ~~~~~~~~~~~~~~~~n~~g~-~~~~~~~~i~~~~~i~~~~~~~i~~~~~~~~-----~---~~~~~~~----~~~~~~~ 206 (470)
...+.-.+..++...+..+|+ |...|+..++...-.+.++++.+-.+.-.++ + .+..++. ++.-|..
T Consensus 167 ~~~~~~~~~w~i~~~ii~~Gv~kgiek~~~~~mp~l~vlliiL~ir~ltLpGp~~~A~~Gl~~~~~Pd~s~L~~~~vw~~ 246 (519)
T 2a65_A 167 FAYIVFLITMFINVSILIRGISKGIERFAKIAMPTLFILAVFLVIRVFLLETPNGTAADGLNFLWTPDFEKLKDPGVWIA 246 (519)
T ss_dssp HHHHHHHHHHHHHHHHHTTCTTTTHHHHHHHHHHHHHHHHHHHHHHHTTCEETTEEHHHHHHHHHSCCTTSTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCHHHhCCHHHHHH
Confidence 444444555566777788899 7788988887766666666555544422110 0 0001111 1234666
Q ss_pred HHHHHHhhhh-hHHHhhhhhccccCCCCchhHHHHHHHHH
Q 012131 207 YLNTLFWNLN-YWDSISTLVGEVEDPGKTLPRALFYALIL 245 (470)
Q Consensus 207 ~~~~~~~~~~-G~e~~~~~~~E~k~P~k~ip~ai~~~~~~ 245 (470)
....++|++. |+.....++.-.|+ +.|++|.-+.....
T Consensus 247 A~gQ~FFSLslG~G~~ity~SY~~~-~~n~~~~a~~v~~~ 285 (519)
T 2a65_A 247 AVGQIFFTLSLGFGAIITYASYVRK-DQDIVLSGLTAATL 285 (519)
T ss_dssp HHHHHHHHHTTTSSHHHHHHTTSCT-TSCCHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHhHHhhhhcccCC-CcChHhhHHHHHHH
Confidence 6666677664 66666666666664 67777765544443
|
| >4ain_A Glycine betaine transporter BETP; membrane protein, chemosensor and osmosensor, secondary TRAN sodium coupled transport; HET: FLC CM5; 3.10A {Corynebacterium glutamicum} PDB: 4doj_A* 2w8a_A 2wit_A 3p03_A | Back alignment and structure |
|---|
Probab=90.37 E-value=15 Score=36.45 Aligned_cols=83 Identities=14% Similarity=0.110 Sum_probs=37.2
Q ss_pred CchhHhHHHh-hCChHHHHHHHHHHHHHhhhHHH----HHHHHHHHHHHhcccc-CCchHHHHHHHHHHHHHHHHHhhhh
Q 012131 87 GGYVVWVASA-LGPHWGFQQGWMKWLSGVIDNAL----YPVLFLDYLKSAIPAL-EGGFPRIVAVLLLTTALTYMNYRGL 160 (470)
Q Consensus 87 GG~y~~~~~~-~g~~~g~~~g~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~n~~g~ 160 (470)
...|-...+. ....+|.+.-....++.++..+. .+.....-++.++... .+...+..+.+++.++.+.-...|+
T Consensus 179 s~l~PllG~r~~~G~~G~~IDilav~atv~GvatSLGlg~~Qi~~Gl~~lfGi~~~~~~~qi~ii~vit~i~~~Sa~sGl 258 (539)
T 4ain_A 179 SAFVPLIGEKGAEGWLGKLIDILAIIATVFGTACSLGLGALQIGAGLSAANIIEDPSDWTIVGIVSVLTLAFIFSAISGV 258 (539)
T ss_dssp GGGHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCCSTTTTTHHHHHHHHHHHHHHHC--
T ss_pred HHhHhhcCCCccCCcchhhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHHHHhH
Confidence 3445444432 33345666666655555554443 3333444455555432 2222333344444455555555554
Q ss_pred ----HHHHHHHHH
Q 012131 161 ----TIVGWVAIV 169 (470)
Q Consensus 161 ----~~~~~~~~i 169 (470)
|...+.|..
T Consensus 259 ~kGIk~LS~~N~~ 271 (539)
T 4ain_A 259 GKGIQYLSNANMV 271 (539)
T ss_dssp -CCHHHHGGGHCC
T ss_pred HHHHHHHHHHHHH
Confidence 555555543
|
| >2wsw_A BCCT family betaine/carnitine/choline transporter; transport protein, SD methionine, membrane protein; HET: CM5 1PE; 2.29A {Proteus mirabilis} PDB: 2wsx_A* 3hfx_A* | Back alignment and structure |
|---|
Probab=86.71 E-value=26 Score=34.55 Aligned_cols=87 Identities=10% Similarity=-0.015 Sum_probs=38.7
Q ss_pred CchhHhHH-HhhCChHHHHHHHHHHHHHhhhHHHH----HHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHhhhh-
Q 012131 87 GGYVVWVA-SALGPHWGFQQGWMKWLSGVIDNALY----PVLFLDYLKSAIPALEGGFPRIVAVLLLTTALTYMNYRGL- 160 (470)
Q Consensus 87 GG~y~~~~-~~~g~~~g~~~g~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~g~- 160 (470)
...|--.. +.....+|.+.-....++.++..+.. +.....-+++++...++...+..+..++..+.+.-...|+
T Consensus 178 s~l~PllG~~r~~G~~G~~IDilav~at~~G~atsLGlg~~qi~~Gl~~lfGi~~~~~~qi~ii~vit~~~~~Sa~sGl~ 257 (509)
T 2wsw_A 178 STLVPLVGEKHVNGLFGTVVDNFYLVALILAMGTSLGLATPLVTECIQYLFGIPHTLQLDAIIISCWILLNAICVAFGLQ 257 (509)
T ss_dssp GGCHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHhHhhcCCcccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHHHHHHHhHH
Confidence 45555554 22233456555555555544443332 3333344445443222223333344344444444455554
Q ss_pred ---HHHHHHHHHHHHH
Q 012131 161 ---TIVGWVAIVLGVF 173 (470)
Q Consensus 161 ---~~~~~~~~i~~~~ 173 (470)
|...+.|..+.+.
T Consensus 258 kGIk~LS~~N~~la~~ 273 (509)
T 2wsw_A 258 KGVKIASDVRTYLSFL 273 (509)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4555555544443
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 470 | |||
| d2a65a1 | 509 | Na(+):neurotransmitter symporter homologue LeuT {A | 96.59 |
| >d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter homologue LeuT {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: SNF-like superfamily: SNF-like family: SNF-like domain: Na(+):neurotransmitter symporter homologue LeuT species: Aquifex aeolicus [TaxId: 63363]
Probab=96.59 E-value=0.33 Score=46.25 Aligned_cols=53 Identities=13% Similarity=0.143 Sum_probs=36.7
Q ss_pred chhhHHHhHhhhhcc--cccchhhHHhhhChHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012131 26 SVIPLVFLIFYEVSG--GPFGVEDSVMAAGPLLALIGFLFFPFIWSIPEALITAEMG 80 (470)
Q Consensus 26 ~~~~~~~~~~~~v~g--g~~~~~~~~~~~g~~~~~~~~ii~~~~~~~~~al~~~el~ 80 (470)
+..+.+.-.+|..+| .+--.|+...+-|+...++.+++..+.+.+|.-+ .|++
T Consensus 6 s~~~fila~~g~avGlGNiWrFPyl~~~nGGgaFlipY~~~l~l~gvPll~--lE~~ 60 (509)
T d2a65a1 6 TRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMW--IEWA 60 (509)
T ss_dssp CHHHHHHHHHHHHSSHHHHTHHHHHHHHTTTHHHHHHHHHHHHHTHHHHHH--HHHH
T ss_pred ChHHHHHHHHHHHhcccHHHhhhHHHHhcCCchhHHHHHHHHHHHHHHHHH--HHHH
Confidence 345556666666656 3566799888766667888888888767888655 6664
|