Citrus Sinensis ID: 012148

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470
MTEFMDLEAQDGVRMPWNVIPGTKQEASNCVVPVSAIYTPIKAFPVNNNSMPILPYAPLRCRTCRSILNPFSIVDFAAKIWICPFCFQRNHFPPHYASITDDNLPAELFPQYTTIEYEPPGPGEKSSVPPVFMFVVDTCIIEEEMSFLKSALSQAIDLLPDNSLVGLITFGTLVQVHELGGFGQIIPKTYVFKGSKDVSKDQLLEQLNFFIKKPKPSTGVIAGVRDGLSSDTIARFLVPAFDCEFTLNSVLEELQKDPWPVPPDQRSTRCTGTALSIAASLLGACVPGSGARILAFVGGPSTEGPAAIVSKNLSEPIRSHKDLDKDSAPHYHKAVKFYDALSKQLVHQGHVLDLFACALDQVGVAELKVAVEKTGGLVVLSDSFGHAVFKDSVRRVFHSGDYDLGLSSKYGFMNFVLYFFLSRIADYPLPVLTIITPLYKKYLLLAKLIYAYMHGADSLFQQDLSLSEHY
cccccccccccccccccccccccHHHHHcccccEEEEEccccccccccccccccccccccccccccEEccccEEEcccEEEEEccccccccccccccccccccccccccccccEEEEcccccccccccccEEEEEEEccHHHHHHHHHHHHHHHHHHccccccEEEEEEEccEEEEEEcccccccccEEEEEcccccccHHHHHHHHHHccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHcccccccEEEEEEccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHccEEEEEEEcccccccHHHcHHHHcccccEEEEEcccccccHHHHHHHHHHccccccccccEEEEEEEEEEEEEccccccccccEEEEccccccEEEEEEEEEEcccccEEEEEEEEEccccc
cccHHHHHHcccEEEEEccccccHHHHHccEEEEEEEEccccccccccccccccccccEEEccccEEEcccEEEcccccEEEcccccccccccccHccccHcccccHHcccccEEEEEEcccccccccccEEEEEEEccccHHHHHHHHHHHHHHHHHcccccEEEEEEcccEEEEEEccccccccccEEEEEccccccHHHHHHHHcccccccccccccccccccccccccHHHccccHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHccccccEEEEEEccccccccccEccHHHccccccHHHHHcccHHHHHHHHHHHHHHHHHHHHcccEEEEEHcHHHHHcHHHHHHHHHHcccEEEEcccccHHHHHHHHHHHHccccccccccEEEEEHHHHHEEEEccccccccEEEEcHcHHHHHHHHHHHHHHHHHHcccHHHHHcccccccc
mtefmdleaqdgvrmpwnvipgtkqeasncvvpvsaiytpikafpvnnnsmpilpyaplrcrtcrsilnpfsivDFAAKiwicpfcfqrnhfpphyasitddnlpaelfpqyttieyeppgpgekssvppvFMFVVDTCIIEEEMSFLKSALSQAidllpdnslvglITFGTLVQVHelggfgqiipktyvfkgskdvskDQLLEQLNFFikkpkpstgviagvrdglssDTIARflvpafdcEFTLNSVLEElqkdpwpvppdqrstrctgTALSIAASLLgacvpgsgARILAfvggpstegpaaivsknlsepirshkdldkdsaphyhKAVKFYDALSKQLVHQGHVLDLFACALDQVGVAELKVAVEKTGGLVVLsdsfghavfkdsvrrvfhsgdydlglsskygfMNFVLYFFLSriadyplpvltiITPLYKKYLLLAKLIYAYMHGADSLFQQdlslsehy
mtefmdleaqdgvrMPWNVIPGTKQEASNCVVPVSAIYTpikafpvnnnSMPILPYAPLRCRTCRSILNPFSIVDFAAKIWICPFCFQRNHFPPHYASITDDNLPAELFPQYTTIEYEPPGPGEKSSVPPVFMFVVDTCIIEEEMSFLKSALSQAIDLLPDNSLVGLITFGTLVQVHELGGFGQIIPKTYVFKGSKDVSKDQLLEQLNFfikkpkpstgvIAGVRDGLSSDTIARFLVPAFDCEFTLNSVLEelqkdpwpvppDQRSTRCTGTALSIAASLLGACVPGSGARILAFVGGPSTEGPAAIVSKNLSEPIRSHKdldkdsapHYHKAVKFYDALSKQLVHQGHVLDLFACALDQVGVAELKVAVEKTGGLVVLSDSFGHAVFKDSVRRVFHSGDYDLGLSSKYGFMNFVLYFFLSRIADYPLPVLTIITPLYKKYLLLAKLIYAYMHGADSLFQQDLSLSEHY
MTEFMDLEAQDGVRMPWNVIPGTKQEASNCVVPVSAIYTPIKAFPVNNNSMPILPYAPLRCRTCRSILNPFSIVDFAAKIWICPFCFQRNHFPPHYASITDDNLPAELFPQYTTIEYEPPGPGEKSSVPPVFMFVVDTCIIEEEMSFLKSALSQAIDLLPDNSLVGLITFGTLVQVHELGGFGQIIPKTYVFKGSKDVSKDQLLEQLNFFIKKPKPSTGVIAGVRDGLSSDTIARFLVPAFDCEFTLNSVLEELQKDPWPVPPDQRSTRCTGTALSIAASLLGACVPGSGARILAFVGGPSTEGPAAIVSKNLSEPIRSHKDLDKDSAPHYHKAVKFYDALSKQLVHQGHVLDLFACALDQVGVAELKVAVEKTGGLVVLSDSFGHAVFKDSVRRVFHSGDYDLGLSSKYGFMNFVLYFFLSRIADYPLPVLTIITPlykkylllakliyayMHGADSLFQQDLSLSEHY
************VRMPWNVIPGTKQEASNCVVPVSAIYTPIKAFPVNNNSMPILPYAPLRCRTCRSILNPFSIVDFAAKIWICPFCFQRNHFPPHYASITDDNLPAELFPQYTTIEY***********PPVFMFVVDTCIIEEEMSFLKSALSQAIDLLPDNSLVGLITFGTLVQVHELGGFGQIIPKTYVFKGSKDVSKDQLLEQLNFFIKKPKPSTGVIAGVRDGLSSDTIARFLVPAFDCEFTLNSVLEELQKDPWP*******TRCTGTALSIAASLLGACVPGSGARILAFVGG******************************HYHKAVKFYDALSKQLVHQGHVLDLFACALDQVGVAELKVAVEKTGGLVVLSDSFGHAVFKDSVRRVFHSGDYDLGLSSKYGFMNFVLYFFLSRIADYPLPVLTIITPLYKKYLLLAKLIYAYMHGADSLF**********
*TEFMDLEAQDGVRMPWNVIPGTKQEASNCVVPVSAIYTPIKAFPVNNNSMPILPYAPLRCRTCRSILNPFSIVDFAAKIWICPFCFQRNHFPPHYASITDDNLPAELFPQYTTIEYEPPGPGEKSSVPPVFMFVVDTCIIEEEMSFLKSALSQAIDLLPDNSLVGLITFGTLVQVHELGGFGQIIPKTYVFKGSKDVSKDQLLEQL*********************SSDTIARFLVPAFDCEFTLNSVLEELQKDPW*********RCTGTALSIAASLLGACVPGSGARILAFVGGPSTEGPAA******************DSAPHYHKAVKFYDALSKQLVHQGHVLDLFACALDQVGVAELKVAVEKTGGLVVLSDSFGHAVFKDSVRRVFHSGDYDLGLSSKYGFMNFVLYFFLSRIADYPLPVLTIITPLYKKYLLLAKLIYAYMHGADSLFQQDLSLSE**
MTEFMDLEAQDGVRMPWNVIPGTKQEASNCVVPVSAIYTPIKAFPVNNNSMPILPYAPLRCRTCRSILNPFSIVDFAAKIWICPFCFQRNHFPPHYASITDDNLPAELFPQYTTIEYEPPGPGEKSSVPPVFMFVVDTCIIEEEMSFLKSALSQAIDLLPDNSLVGLITFGTLVQVHELGGFGQIIPKTYVFKGSKDVSKDQLLEQLNFFIKKPKPSTGVIAGVRDGLSSDTIARFLVPAFDCEFTLNSVLEELQKDPWPVPPDQRSTRCTGTALSIAASLLGACVPGSGARILAFVGGPSTEGPAAIVSKNLSEPIRSHKDLDKDSAPHYHKAVKFYDALSKQLVHQGHVLDLFACALDQVGVAELKVAVEKTGGLVVLSDSFGHAVFKDSVRRVFHSGDYDLGLSSKYGFMNFVLYFFLSRIADYPLPVLTIITPLYKKYLLLAKLIYAYMHGADSLFQQDLSLSEHY
*TEFMDLEAQDGVRMPWNVIPGTKQEASNCVVPVSAIYTPIKAFPVNNNSMPILPYAPLRCRTCRSILNPFSIVDFAAKIWICPFCFQRNHFPPHYASITDDNLPAELFPQYTTIEYEPPGPGEKSSVPPVFMFVVDTCIIEEEMSFLKSALSQAIDLLPDNSLVGLITFGTLVQVHELGGFGQIIPKTYVFKGSKDVSKDQLLEQLNFFI******************SDTIARFLVPAFDCEFTLNSVLEELQKDPWPVPPDQRSTRCTGTALSIAASLLGACVPGSGARILAFVGGPSTEGPAAIVSKNLSEPIRSHKDLDKDSAPHYHKAVKFYDALSKQLVHQGHVLDLFACALDQVGVAELKVAVEKTGGLVVLSDSFGHAVFKDSVRRVFHSGDYDLGLSSKYGFMNFVLYFFLSRIADYPLPVLTIITPLYKKYLLLAKLIYAYMHGADSLFQQDLSL****
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MTEFMDLEAQDGVRMPWNVIPGTKQEASNCVVPVSAIYTPIKAFPVNNNSMPILPYAPLRCRTCRSILNPFSIVDFAAKIWICPFCFQRNHFPPHYASITDDNLPAELFPQYTTIEYEPPGPGEKSSVPPVFMFVVDTCIIEEEMSFLKSALSQAIDLLPDNSLVGLITFGTLVQVHELGGFGQIIPKTYVFKGSKDVSKDQLLEQLNFFIKKPKPSTGVIAGVRDGLSSDTIARFLVPAFDCEFTLNSVLEELQKDPWPVPPDQRSTRCTGTALSIAASLLGACVPGSGARILAFVGGPSTEGPAAIVSKNLSEPIRSHKDLDKDSAPHYHKAVKFYDALSKQLVHQGHVLDLFACALDQVGVAELKVAVEKTGGLVVLSDSFGHAVFKDSVRRVFHSGDYDLGLSSKYGFMNFVLYFFLSRIADYPLPVLTIITPLYKKYLLLAKLIYAYMHGADSLFQQDLSLSEHY
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query470 2.2.26 [Sep-21-2011]
P0CR38 763 Protein transport protein yes no 0.844 0.520 0.460 1e-106
P0CR39 763 Protein transport protein N/A no 0.844 0.520 0.460 1e-106
Q4PE39 773 Protein transport protein N/A no 0.806 0.490 0.456 1e-105
Q1DY01 772 Protein transport protein N/A no 0.814 0.496 0.478 1e-105
A4R1J7 770 Protein transport protein N/A no 0.831 0.507 0.472 1e-105
Q2HB00 773 Protein transport protein N/A no 0.834 0.507 0.465 1e-103
Q0US25 776 Protein transport protein N/A no 0.821 0.497 0.454 1e-102
Q2URM9 769 Protein transport protein yes no 0.8 0.488 0.461 1e-102
A1CRW7 762 Protein transport protein N/A no 0.827 0.510 0.475 1e-102
Q9C284 775 Protein transport protein N/A no 0.821 0.498 0.458 1e-102
>sp|P0CR38|SEC23_CRYNJ Protein transport protein SEC23 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=SEC23 PE=3 SV=1 Back     alignment and function desciption
 Score =  384 bits (986), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 193/419 (46%), Positives = 266/419 (63%), Gaps = 22/419 (5%)

Query: 4   FMDLEAQDGVRMPWNVIPGTKQEASNCVVPVSAIYTPIKAFPVNNNSMPILPYAPLRCR- 62
           F D+E +DGVR  WNV P ++ EA+  VVP+SA+YTP+K        +P + Y P+ C+ 
Sbjct: 3   FEDIEDKDGVRFSWNVWPSSRLEATRTVVPISALYTPLK----EREDLPPVMYEPVTCKG 58

Query: 63  -TCRSILNPFSIVDFAAKIWICPFCFQRNHFPPHY-ASITDDNLPAELFPQYTTIEYEPP 120
            +C++ILNP+  VD   K+WICPFC QRN FPPHY   ++ +NLP EL P++TTIEY   
Sbjct: 59  SSCKAILNPYCQVDVRGKMWICPFCLQRNPFPPHYHQDLSPNNLPPELLPKFTTIEYTLS 118

Query: 121 GPGEKSSVPPVFMFVVDTCIIEEEMSFLKSALSQAIDLLPDNSLVGLITFGTLVQVHELG 180
            P +   +PP+F++VVDTC+ E+E+  LK  L  ++ LLP N+LVGLIT+GT+  VHEL 
Sbjct: 119 RPAQ---IPPIFLYVVDTCVDEDELKALKETLVVSLSLLPPNALVGLITYGTMAMVHELA 175

Query: 181 GFGQIIPKTYVFKGSKDVSKDQLLEQLNFFIKKPKPSTGVIAGVRDG--LSSDTIARFLV 238
                 PK YVF+GSKD    Q+ + L        PS   I  VR G  + +   ++FL+
Sbjct: 176 YAD--CPKAYVFRGSKDYQPKQIADMLGL-----NPSNRPIQPVRPGQPMPAPAASKFLM 228

Query: 239 PAFDCEFTLNSVLEELQKDPWPVPPDQRSTRCTGTALSIAASLLGACVPGSGARILAFVG 298
           P   CEF L ++LE+LQ+DPWPV  D+R  RCTG ALS+A SLL    P +GARI+ F G
Sbjct: 229 PVQACEFQLTNILEQLQRDPWPVEQDKRPLRCTGVALSVAVSLLETAFPNTGARIMLFSG 288

Query: 299 GPSTEGPAAIVSKNLSEPIRSHKDLDKDSAPHYHKAVKFYDALSKQLVHQGHVLDLFACA 358
           GP+T+GP  +V   L EPIRSH D+D+DS  H+ +A KFY+ALSK+    GH +D++A  
Sbjct: 289 GPATDGPGMVVGPELREPIRSHHDIDRDSVKHFKRASKFYEALSKRASVNGHAIDIYAGC 348

Query: 359 LDQVGVAELKVAVEKTGGLVVLSDSFGHAVFKDSVRRVF---HSGDYDLGLSSKYGFMN 414
           LDQVG+ E+K     T G++ +SDSF  A+FK S  R       G   +G ++ Y  + 
Sbjct: 349 LDQVGLLEMKSLTNATNGVMTISDSFMTAIFKQSFLRTLGKDEQGYLKMGFNATYDVLT 407
Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules.
Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) (taxid: 214684)
>sp|P0CR39|SEC23_CRYNB Protein transport protein SEC23 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN=SEC23 PE=3 SV=1 Back     alignment and function description
>sp|Q4PE39|SEC23_USTMA Protein transport protein SEC23 OS=Ustilago maydis (strain 521 / FGSC 9021) GN=SEC23 PE=3 SV=1 Back     alignment and function description
>sp|Q1DY01|SEC23_COCIM Protein transport protein SEC23 OS=Coccidioides immitis (strain RS) GN=SEC23 PE=3 SV=1 Back     alignment and function description
>sp|A4R1J7|SEC23_MAGO7 Protein transport protein SEC23 OS=Magnaporthe oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) GN=SEC23 PE=3 SV=1 Back     alignment and function description
>sp|Q2HB00|SEC23_CHAGB Protein transport protein SEC23 OS=Chaetomium globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 / NRRL 1970) GN=SEC23 PE=3 SV=1 Back     alignment and function description
>sp|Q0US25|SEC23_PHANO Protein transport protein SEC23 OS=Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 / FGSC 10173) GN=SEC23 PE=3 SV=2 Back     alignment and function description
>sp|Q2URM9|SEC23_ASPOR Protein transport protein sec23 OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) GN=sec23 PE=3 SV=1 Back     alignment and function description
>sp|A1CRW7|SEC23_ASPCL Protein transport protein sec23 OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1) GN=sec23 PE=3 SV=1 Back     alignment and function description
>sp|Q9C284|SEC23_NEUCR Protein transport protein sec-23 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=sec-23 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query470
449498965 761 PREDICTED: protein transport protein SEC 0.853 0.526 0.848 0.0
449470750 761 PREDICTED: protein transport protein SEC 0.853 0.526 0.848 0.0
255571157 761 protein transport protein sec23, putativ 0.853 0.526 0.845 0.0
449454554 769 PREDICTED: LOW QUALITY PROTEIN: protein 0.853 0.521 0.832 0.0
224129388 773 predicted protein [Populus trichocarpa] 0.857 0.521 0.814 0.0
356558936 765 PREDICTED: protein transport protein SEC 0.857 0.526 0.788 0.0
356504446 767 PREDICTED: protein transport protein SEC 0.857 0.525 0.779 0.0
357513131 763 Protein transport protein SEC23 [Medicag 0.846 0.521 0.785 0.0
297744803 800 unnamed protein product [Vitis vinifera] 0.853 0.501 0.772 0.0
225464297 761 PREDICTED: protein transport protein SEC 0.853 0.526 0.772 0.0
>gi|449498965|ref|XP_004160683.1| PREDICTED: protein transport protein SEC23-like [Cucumis sativus] Back     alignment and taxonomy information
 Score =  719 bits (1855), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 347/409 (84%), Positives = 381/409 (93%), Gaps = 8/409 (1%)

Query: 1   MTEFMDLEAQDGVRMPWNVIPGTKQEASNCVVPVSAIYTPIKAFPVNNNSMPILPYAPLR 60
           M EF+DLEAQDGVRMPWNV+PGTKQEASNC+VPVSA+YTPIKAFP    +MP+LPY+PLR
Sbjct: 1   MAEFLDLEAQDGVRMPWNVVPGTKQEASNCIVPVSALYTPIKAFP----NMPVLPYSPLR 56

Query: 61  CRTCRSILNPFSIVDFAAKIWICPFCFQRNHFPPHYASITDDNLPAELFPQYTTIEYEPP 120
           CRTCRSILNPFSIVDFAAKIWICPFCFQRNHFPPHYASI+DDNLPAELFPQYTTIEYE  
Sbjct: 57  CRTCRSILNPFSIVDFAAKIWICPFCFQRNHFPPHYASISDDNLPAELFPQYTTIEYEST 116

Query: 121 GPGEKSSVPPVFMFVVDTCIIEEEMSFLKSALSQAIDLLPDNSLVGLITFGTLVQVHELG 180
           G    S VPPVFMFV+DTCIIEEE++FLKSALSQA+DLLPDNSLVGL+T+GT V VHELG
Sbjct: 117 GE-TPSPVPPVFMFVLDTCIIEEEITFLKSALSQAVDLLPDNSLVGLVTYGTFVHVHELG 175

Query: 181 GFGQIIPKTYVFKGSKDVSKDQLLEQLNFFIKKPKPSTGVIAGVRDGLSSDTIARFLVPA 240
            FGQI PKT+VFKG+KDVSKDQLLEQ+NFF+KKPKP TGVIAG RDGLS+++IARFL+P 
Sbjct: 176 -FGQI-PKTFVFKGTKDVSKDQLLEQMNFFLKKPKPPTGVIAGARDGLSTESIARFLLPK 233

Query: 241 FDCEFTLNSVLEELQKDPWPVPPDQRSTRCTGTALSIAASLLGACVPGSGARILAFVGGP 300
            +CEF LNSVLEELQKDPW VP DQR+ RCTGTALSIAASLLGACVPGSGARILAFVGGP
Sbjct: 234 SECEFALNSVLEELQKDPWGVPADQRAPRCTGTALSIAASLLGACVPGSGARILAFVGGP 293

Query: 301 STEGPAAIVSKNLSEPIRSHKDLDKDSAPHYHKAVKFYDALSKQLVHQGHVLDLFACALD 360
           ST+GP AIVSKNLSEPIRSHKDLDKDSAPH+HKAVKFY+ LSKQLVHQGHVLDLFACALD
Sbjct: 294 STDGPGAIVSKNLSEPIRSHKDLDKDSAPHFHKAVKFYEGLSKQLVHQGHVLDLFACALD 353

Query: 361 QVGVAELKVAVEKTGGLVVLSDSFGHAVFKDSVRRVFHSGDYDLGLSSK 409
           QVG+AELKVAVEKTGGLVVL++SFGH+VFKDS++RVF SG+YDLGLSS 
Sbjct: 354 QVGIAELKVAVEKTGGLVVLAESFGHSVFKDSLKRVF-SGEYDLGLSSN 401

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|449470750|ref|XP_004153079.1| PREDICTED: protein transport protein SEC23-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|255571157|ref|XP_002526529.1| protein transport protein sec23, putative [Ricinus communis] gi|223534204|gb|EEF35920.1| protein transport protein sec23, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|449454554|ref|XP_004145019.1| PREDICTED: LOW QUALITY PROTEIN: protein transport protein SEC23-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224129388|ref|XP_002320574.1| predicted protein [Populus trichocarpa] gi|222861347|gb|EEE98889.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356558936|ref|XP_003547758.1| PREDICTED: protein transport protein SEC23-like [Glycine max] Back     alignment and taxonomy information
>gi|356504446|ref|XP_003521007.1| PREDICTED: protein transport protein SEC23-like [Glycine max] Back     alignment and taxonomy information
>gi|357513131|ref|XP_003626854.1| Protein transport protein SEC23 [Medicago truncatula] gi|355520876|gb|AET01330.1| Protein transport protein SEC23 [Medicago truncatula] Back     alignment and taxonomy information
>gi|297744803|emb|CBI38071.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|225464297|ref|XP_002265101.1| PREDICTED: protein transport protein SEC23-like [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query470
TAIR|locus:2049324 761 AT2G21630 "AT2G21630" [Arabido 0.853 0.526 0.675 6.4e-147
TAIR|locus:2129460 773 AT4G14160 "AT4G14160" [Arabido 0.844 0.513 0.608 1.1e-133
TAIR|locus:2201051 783 AT1G05520 "AT1G05520" [Arabido 0.840 0.504 0.590 1.2e-127
UNIPROTKB|A4R1J7 770 SEC23 "Protein transport prote 0.831 0.507 0.475 1.3e-98
ASPGD|ASPL0000061491 771 sec23 [Emericella nidulans (ta 0.817 0.498 0.478 6.6e-97
POMBASE|SPCC31H12.07 759 sec231 "COPII cargo receptor s 0.814 0.504 0.458 1e-93
FB|FBgn0262125 773 Sec23 "Sec23 ortholog (S. cere 0.842 0.512 0.450 5.7e-91
UNIPROTKB|Q15436 765 SEC23A "Protein transport prot 0.823 0.505 0.456 3.1e-90
MGI|MGI:1349635 765 Sec23a "SEC23A (S. cerevisiae) 0.823 0.505 0.456 5.1e-90
RGD|1309103 765 Sec23a "Sec23 homolog A (S. ce 0.823 0.505 0.456 5.1e-90
TAIR|locus:2049324 AT2G21630 "AT2G21630" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1435 (510.2 bits), Expect = 6.4e-147, P = 6.4e-147
 Identities = 277/410 (67%), Positives = 337/410 (82%)

Query:     1 MTEFMDLEAQDGVRMPWNVIP-GTKQEAS-NCVVPVSAIYTPIKAFPVNNNSMPILPYAP 58
             M EF +LEAQDGVRMPWN+IP  TK+E S +  VPVSAIYTP+K  P+ + S+ +LPY+P
Sbjct:     1 MAEFGELEAQDGVRMPWNIIPVATKKEQSIDSEVPVSAIYTPLK--PLRSQSL-LLPYSP 57

Query:    59 LRCRTCRSILNPFSIVDFAAKIWICPFCFQRNHFPPHYASITDDNLPAELFPQYTTIEYE 118
             LRCRTCRS+LNP+S+VDF+A  W CPFCF RN FP +Y+S+ D+NLP ELFP  TT+EY 
Sbjct:    58 LRCRTCRSVLNPYSVVDFSACNWGCPFCFNRNPFPLNYSSVADNNLPPELFPHSTTVEYL 117

Query:   119 PPGPGEKSSVPPVFMFVVDTCIIEEEMSFLKSALSQAIDLLPDNSLVGLITFGTLVQVHE 178
                    S  PPVF+FVVDTC+I EE+ FLKS+L QA+DLLPD S++GLITF +LV+V+E
Sbjct:   118 CDSFSSPS--PPVFLFVVDTCLISEELDFLKSSLFQALDLLPDTSILGLITFDSLVRVYE 175

Query:   179 LGGFGQIIPKTYVFKGSKDVSKDQLLEQLNFFIKKPKPSTGVIAGVRDGLSSDTIARFLV 238
             LG F     K+Y F G+KD +KDQLL+QL+FF+K PKPS+GVIAG RDGLSSD IARFL+
Sbjct:   176 LG-FPHCT-KSYFFHGNKDCTKDQLLDQLSFFVKNPKPSSGVIAGARDGLSSDDIARFLL 233

Query:   239 PAFDCEFTLNSVLEELQKDPWPVPPDQRSTRCTGTALSIAASLLGACVPGSGARILAFVG 298
             PA DC FTL+SVLEEL   PWPV  D R  RCTG AL IAASLLGAC PGS ARI+AF+G
Sbjct:   234 PASDCHFTLHSVLEELGNSPWPVAADHRPARCTGVALRIAASLLGACFPGSAARIMAFIG 293

Query:   299 GPSTEGPAAIVSKNLSEPIRSHKDLDKDSAPHYHKAVKFYDALSKQLVHQGHVLDLFACA 358
             GPST+GP AIVS+ LS+PIRSHKD+DKDSA +YHKAV+FY+ L+KQLVHQGHVLD+FA +
Sbjct:   294 GPSTQGPGAIVSRELSDPIRSHKDIDKDSAMYYHKAVEFYEMLAKQLVHQGHVLDVFASS 353

Query:   359 LDQVGVAELKVAVEKTGGLVVLSDSFGHAVFKDSVRRVFHSGDYDLGLSS 408
             +DQVG+AELKVAVE+TGG VVL++SFGH+VF+DS++RV  SG+ DLGLSS
Sbjct:   354 VDQVGIAELKVAVEQTGGFVVLAESFGHSVFRDSLKRVCQSGENDLGLSS 403
GO:0005215 "transporter activity" evidence=ISS
GO:0005737 "cytoplasm" evidence=ISM
GO:0006810 "transport" evidence=ISS
GO:0006886 "intracellular protein transport" evidence=IEA
GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA
GO:0008270 "zinc ion binding" evidence=IEA
GO:0030127 "COPII vesicle coat" evidence=IEA
TAIR|locus:2129460 AT4G14160 "AT4G14160" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2201051 AT1G05520 "AT1G05520" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|A4R1J7 SEC23 "Protein transport protein SEC23" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms
ASPGD|ASPL0000061491 sec23 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
POMBASE|SPCC31H12.07 sec231 "COPII cargo receptor subunit Sec23a (predicted)" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
FB|FBgn0262125 Sec23 "Sec23 ortholog (S. cerevisiae)" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|Q15436 SEC23A "Protein transport protein Sec23A" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:1349635 Sec23a "SEC23A (S. cerevisiae)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1309103 Sec23a "Sec23 homolog A (S. cerevisiae)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
estExt_fgenesh4_pg.C_LG_XIV1163
protein transport protein sec23 (773 aa)
(Populus trichocarpa)
Predicted Functional Partners:
estExt_fgenesh4_pg.C_LG_XV0440
hypothetical protein (301 aa)
     •  0.831
estExt_fgenesh4_pg.C_LG_X0913
SubName- Full=Putative uncharacterized protein; (301 aa)
     •  0.831
estExt_fgenesh4_pg.C_LG_IX1026
hypothetical protein (1105 aa)
     •  0.811
gw1.I.1579.1
hypothetical protein (1105 aa)
     •  0.811

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query470
PLN00162 761 PLN00162, PLN00162, transport protein sec23; Provi 0.0
cd01478267 cd01478, Sec23-like, Sec23-like: Protein and membr 1e-147
COG5047 755 COG5047, SEC23, Vesicle coat complex COPII, subuni 1e-131
pfam04811241 pfam04811, Sec23_trunk, Sec23/Sec24 trunk domain 3e-72
cd01468239 cd01468, trunk_domain, trunk domain 4e-69
pfam0481039 pfam04810, zf-Sec23_Sec24, Sec23/Sec24 zinc finger 4e-20
COG5028 861 COG5028, COG5028, Vesicle coat complex COPII, subu 8e-14
>gnl|CDD|215083 PLN00162, PLN00162, transport protein sec23; Provisional Back     alignment and domain information 
 Score =  766 bits (1981), Expect = 0.0
 Identities = 287/407 (70%), Positives = 338/407 (83%), Gaps = 7/407 (1%)

Query: 3   EFMDLEAQDGVRMPWNVIPGTKQEASNCVVPVSAIYTPIKAFPVNNNSMPILPYAPLRCR 62
           +F +LEA DGVRM WNV P +K EAS CV+P++A+YTP+K  P     +P+LPY PLRCR
Sbjct: 2   DFAELEAIDGVRMSWNVWPSSKIEASKCVIPLAALYTPLKPLP----ELPVLPYDPLRCR 57

Query: 63  TCRSILNPFSIVDFAAKIWICPFCFQRNHFPPHYASITDDNLPAELFPQYTTIEYEPPGP 122
           TCR++LNP+  VDF AKIWICPFCFQRNHFPPHY+SI++ NLPAELFPQYTT+EY  P  
Sbjct: 58  TCRAVLNPYCRVDFQAKIWICPFCFQRNHFPPHYSSISETNLPAELFPQYTTVEYTLPPG 117

Query: 123 GEKSSVPPVFMFVVDTCIIEEEMSFLKSALSQAIDLLPDNSLVGLITFGTLVQVHELGGF 182
              +  PPVF+FVVDTC+IEEE+  LKSAL QAI LLP+N+LVGLITFGT V VHELG F
Sbjct: 118 SGGAPSPPVFVFVVDTCMIEEELGALKSALLQAIALLPENALVGLITFGTHVHVHELG-F 176

Query: 183 GQIIPKTYVFKGSKDVSKDQLLEQLNFFIKKPKPSTGVIAGVRDGLSSDTIARFLVPAFD 242
            +   K+YVF+G+K+VSKDQ+LEQL    KK +P+ G IAG RDGLSS  + RFL+PA +
Sbjct: 177 SEC-SKSYVFRGNKEVSKDQILEQLGLGGKKRRPAGGGIAGARDGLSSSGVNRFLLPASE 235

Query: 243 CEFTLNSVLEELQKDPWPVPPDQRSTRCTGTALSIAASLLGACVPGSGARILAFVGGPST 302
           CEFTLNS LEELQKDPWPVPP  R  RCTG ALS+AA LLGACVPG+GARI+AFVGGP T
Sbjct: 236 CEFTLNSALEELQKDPWPVPPGHRPARCTGAALSVAAGLLGACVPGTGARIMAFVGGPCT 295

Query: 303 EGPAAIVSKNLSEPIRSHKDLDKDSAPHYHKAVKFYDALSKQLVHQGHVLDLFACALDQV 362
           EGP AIVSK+LSEPIRSHKDLDKD+AP+Y KAVKFY+ L+KQLV QGHVLD+FAC+LDQV
Sbjct: 296 EGPGAIVSKDLSEPIRSHKDLDKDAAPYYKKAVKFYEGLAKQLVAQGHVLDVFACSLDQV 355

Query: 363 GVAELKVAVEKTGGLVVLSDSFGHAVFKDSVRRVF-HSGDYDLGLSS 408
           GVAE+KVAVE+TGGLVVL++SFGH+VFKDS+RRVF   G+  LGLS 
Sbjct: 356 GVAEMKVAVERTGGLVVLAESFGHSVFKDSLRRVFERDGEGSLGLSF 402

Length = 761
>gnl|CDD|238755 cd01478, Sec23-like, Sec23-like: Protein and membrane traffic in eukaryotes is mediated by at least in part by the budding and fusion of intracellular transport vesicles that selectively carry cargo proteins and lipids from donor to acceptor organelles Back     alignment and domain information
>gnl|CDD|227380 COG5047, SEC23, Vesicle coat complex COPII, subunit SEC23 [Intracellular trafficking and secretion] Back     alignment and domain information
>gnl|CDD|147125 pfam04811, Sec23_trunk, Sec23/Sec24 trunk domain Back     alignment and domain information
>gnl|CDD|238745 cd01468, trunk_domain, trunk domain Back     alignment and domain information
>gnl|CDD|203092 pfam04810, zf-Sec23_Sec24, Sec23/Sec24 zinc finger Back     alignment and domain information
>gnl|CDD|227361 COG5028, COG5028, Vesicle coat complex COPII, subunit SEC24/subunit SFB2/subunit SFB3 [Intracellular trafficking and secretion] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 470
PLN00162 761 transport protein sec23; Provisional 100.0
KOG1986 745 consensus Vesicle coat complex COPII, subunit SEC2 100.0
KOG1985 887 consensus Vesicle coat complex COPII, subunit SEC2 100.0
COG5047 755 SEC23 Vesicle coat complex COPII, subunit SEC23 [I 100.0
KOG1984 1007 consensus Vesicle coat complex COPII, subunit SFB3 100.0
COG5028 861 Vesicle coat complex COPII, subunit SEC24/subunit 100.0
PTZ00395 1560 Sec24-related protein; Provisional 100.0
cd01478267 Sec23-like Sec23-like: Protein and membrane traffi 100.0
cd01468239 trunk_domain trunk domain. COPII-coated vesicles c 100.0
cd01479244 Sec24-like Sec24-like: Protein and membrane traffi 100.0
PF04811243 Sec23_trunk: Sec23/Sec24 trunk domain; InterPro: I 100.0
PF0481040 zf-Sec23_Sec24: Sec23/Sec24 zinc finger; InterPro: 99.65
cd01465170 vWA_subgroup VWA subgroup: Von Willebrand factor t 98.59
PRK13685326 hypothetical protein; Provisional 98.56
cd01451178 vWA_Magnesium_chelatase Magnesium chelatase: Mg-ch 98.55
cd01456206 vWA_ywmD_type VWA ywmD type:Von Willebrand factor 98.51
cd01453183 vWA_transcription_factor_IIH_type Transcription fa 98.51
cd01463190 vWA_VGCC_like VWA Voltage gated Calcium channel li 98.48
cd01466155 vWA_C3HC4_type VWA C3HC4-type: Von Willebrand fact 98.46
TIGR03436296 acidobact_VWFA VWFA-related Acidobacterial domain. 98.39
cd01467180 vWA_BatA_type VWA BatA type: Von Willebrand factor 98.32
cd01472164 vWA_collagen von Willebrand factor (vWF) type A do 98.29
cd01470198 vWA_complement_factors Complement factors B and C2 98.29
cd01480186 vWA_collagen_alpha_1-VI-type VWA_collagen alpha(VI 98.21
TIGR00868 863 hCaCC calcium-activated chloride channel protein 1 98.11
cd01452187 VWA_26S_proteasome_subunit 26S proteasome plays a 98.09
cd01461171 vWA_interalpha_trypsin_inhibitor vWA_interalpha tr 98.09
PF13519172 VWA_2: von Willebrand factor type A domain; PDB: 3 98.08
PF13768155 VWA_3: von Willebrand factor type A domain 97.96
PF0803396 Sec23_BS: Sec23/Sec24 beta-sandwich domain; InterP 97.94
cd01474185 vWA_ATR ATR (Anthrax Toxin Receptor): Anthrax toxi 97.92
cd01475224 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, 97.88
cd01471186 vWA_micronemal_protein Micronemal proteins: The To 97.82
cd01482164 vWA_collagen_alphaI-XII-like Collagen: The extrace 97.81
cd01450161 vWFA_subfamily_ECM Von Willebrand factor type A (v 97.78
cd01469177 vWA_integrins_alpha_subunit Integrins are a class 97.76
cd01477193 vWA_F09G8-8_type VWA F09G8.8 type: Von Willebrand 97.63
TIGR02031589 BchD-ChlD magnesium chelatase ATPase subunit D. Th 97.63
smart00327177 VWA von Willebrand factor (vWF) type A domain. VWA 97.59
cd01481165 vWA_collagen_alpha3-VI-like VWA_collagen alpha 3(V 97.58
TIGR03788596 marine_srt_targ marine proteobacterial sortase tar 97.54
cd01476163 VWA_integrin_invertebrates VWA_integrin (invertebr 97.51
PF00092178 VWA: von Willebrand factor type A domain; InterPro 97.47
PRK13406584 bchD magnesium chelatase subunit D; Provisional 97.38
TIGR02442633 Cob-chelat-sub cobaltochelatase subunit. A number 97.33
cd00198161 vWFA Von Willebrand factor type A (vWA) domain was 97.33
cd01473192 vWA_CTRP CTRP for CS protein-TRAP-related protein: 97.17
PTZ00441 576 sporozoite surface protein 2 (SSP2); Provisional 97.16
COG1240261 ChlD Mg-chelatase subunit ChlD [Coenzyme metabolis 97.16
PF04056193 Ssl1: Ssl1-like; InterPro: IPR007198 Ssl1-like pro 96.89
cd01458218 vWA_ku Ku70/Ku80 N-terminal domain. The Ku78 heter 96.71
cd01454174 vWA_norD_type norD type: Denitrifying bacteria con 96.5
cd01462152 VWA_YIEM_type VWA YIEM type: Von Willebrand factor 96.28
TIGR00578 584 ku70 ATP-dependent DNA helicase ii, 70 kDa subunit 95.24
cd01464176 vWA_subfamily VWA subfamily: Von Willebrand factor 93.71
cd01460266 vWA_midasin VWA_Midasin: Midasin is a member of th 93.15
COG4245207 TerY Uncharacterized protein encoded in toxicity p 91.08
PF1005854 DUF2296: Predicted integral membrane metal-binding 84.8
KOG2884259 consensus 26S proteasome regulatory complex, subun 83.58
TIGR0105331 LSD1 zinc finger domain, LSD1 subclass. This model 83.41
PRK0039846 rpoP DNA-directed RNA polymerase subunit P; Provis 82.87
KOG2807378 consensus RNA polymerase II transcription initiati 80.39
>PLN00162 transport protein sec23; Provisional Back     alignment and domain information 
Probab=100.00  E-value=6.7e-94  Score=788.04  Aligned_cols=452  Identities=64%  Similarity=1.075  Sum_probs=400.8

Q ss_pred             CCcccccCCCeeeecCCCCCCCHHHHhhCCCCeEEEEccCCCCCCCCCCCCCCCCCCccccCCCeeeCCCceEEcCCceE
Q 012148            2 TEFMDLEAQDGVRMPWNVIPGTKQEASNCVVPVSAIYTPIKAFPVNNNSMPILPYAPLRCRTCRSILNPFSIVDFAAKIW   81 (470)
Q Consensus         2 ~~~~~~~~~~~iR~T~~~~P~t~~~~~~~~iPlg~vv~P~~~~~~~~~~ip~v~~~~~RC~~C~aYiNp~~~~~~~g~~w   81 (470)
                      |||++.|+.++||+|||+||+++.++++++|||||+|+||++.    +++|+++++|+||++|+|||||||+|+.+|++|
T Consensus         1 ~~~~~~e~~~gvR~s~n~~P~t~~~~~~~~iPlg~v~tPl~~~----~~vp~v~~~pvRC~~CraylNPf~~~d~~~~~W   76 (761)
T PLN00162          1 MDFAELEAIDGVRMSWNVWPSSKIEASKCVIPLAALYTPLKPL----PELPVLPYDPLRCRTCRAVLNPYCRVDFQAKIW   76 (761)
T ss_pred             CchhhhcccCceEeeeecCCCCHHHHhcCCCCeEEEEecCCcC----CCCCcCCCCCCccCCCcCEECCceEEecCCCEE
Confidence            7999999999999999999999999999999999999999886    569999999999999999999999999999999


Q ss_pred             EeCCCCCCCCCCccccCCCCCCCCcccCCCcceEEEeCCCCCCCCCCCCEEEEEEEcccchhhHHHHHHHHHHHhhcCCC
Q 012148           82 ICPFCFQRNHFPPHYASITDDNLPAELFPQYTTIEYEPPGPGEKSSVPPVFMFVVDTCIIEEEMSFLKSALSQAIDLLPD  161 (470)
Q Consensus        82 ~C~~C~~~N~vp~~y~~~~~~~~~pEL~~~~~tvey~~~~~~~~~~~~p~~vFvID~S~~~~~~~~l~~~l~~~l~~lp~  161 (470)
                      +||||++.|.+|++|..+++.++||||.++++||||.+++...+++.||+|+||||+|..+++++.++++|+++|+.||+
T Consensus        77 ~C~~C~~~N~~P~~Y~~~~~~~~p~EL~p~~~TvEY~~p~~~~~~~~pp~fvFvID~s~~~~~l~~lk~sl~~~L~~LP~  156 (761)
T PLN00162         77 ICPFCFQRNHFPPHYSSISETNLPAELFPQYTTVEYTLPPGSGGAPSPPVFVFVVDTCMIEEELGALKSALLQAIALLPE  156 (761)
T ss_pred             EccCCCCCCCCchHhcccCccCCChhhcCCceeEEEECCCCCCCCCCCcEEEEEEecchhHHHHHHHHHHHHHHHHhCCC
Confidence            99999999999999987777889999999999999999852234568999999999999999999999999999999999


Q ss_pred             CceEEEEEECCeEEEEEcCCCCCCCCceeeecCCcccCHHHHHHHhhcccCCCCCCCccccCccCCCCccccccceeecc
Q 012148          162 NSLVGLITFGTLVQVHELGGFGQIIPKTYVFKGSKDVSKDQLLEQLNFFIKKPKPSTGVIAGVRDGLSSDTIARFLVPAF  241 (470)
Q Consensus       162 ~~~VglITfd~~V~~y~l~~~~~~~~~~~v~~g~~~~t~~~i~~~~~l~~~~~~~~~~~~p~~~d~~~~~~~~~~lv~~~  241 (470)
                      +++|||||||+.||||+|+ .+. +++++||+|+++++.+++++++++.+.+..++....+.-.++++....++||+|++
T Consensus       157 ~a~VGlITF~s~V~~~~L~-~~~-~~~~~Vf~g~k~~t~~~l~~~l~l~~~~~~~~~~~~~~~~~~~~~p~~~~fLvpl~  234 (761)
T PLN00162        157 NALVGLITFGTHVHVHELG-FSE-CSKSYVFRGNKEVSKDQILEQLGLGGKKRRPAGGGIAGARDGLSSSGVNRFLLPAS  234 (761)
T ss_pred             CCEEEEEEECCEEEEEEcC-CCC-CcceEEecCCccCCHHHHHHHhccccccccccccccccccccccCCCccceeEEHH
Confidence            9999999999999999999 766 89999999999999999999988754211111000000001111114589999999


Q ss_pred             chHHHHHHHHHhccCCCCCCCCCCCCccchhHHHHHHHHHHhccCCCCCcEEEEEecCCCCCCCceeecCCCCCcccCCC
Q 012148          242 DCEFTLNSVLEELQKDPWPVPPDQRSTRCTGTALSIAASLLGACVPGSGARILAFVGGPSTEGPAAIVSKNLSEPIRSHK  321 (470)
Q Consensus       242 ~~~~~i~~lL~~L~~~~~~~~~~~~~~~~~G~AL~~A~~ll~~~~~~~GG~Ii~F~~g~pt~GpG~l~~~~~~~~~r~~~  321 (470)
                      ||+..|..+||+|++++|++++++|+.||+|+||++|..+|+.+..++||||++|++||||.|||+|+.++.++++|+|+
T Consensus       235 e~~~~i~~lLe~L~~~~~~~~~~~rp~r~tG~AL~vA~~lL~~~~~~~gGrI~~F~sgppT~GpG~v~~r~~~~~~rsh~  314 (761)
T PLN00162        235 ECEFTLNSALEELQKDPWPVPPGHRPARCTGAALSVAAGLLGACVPGTGARIMAFVGGPCTEGPGAIVSKDLSEPIRSHK  314 (761)
T ss_pred             HHHHHHHHHHHhhhccccccCCCCCCCccHHHHHHHHHHHHhhccCCCceEEEEEeCCCCCCCCceeecccccccccCcc
Confidence            99999999999999999988889999999999999999999988888999999999999999999999999999999999


Q ss_pred             CCCCCCCCccchhHHHHHHHHHHHHhcCeEEEEeeccCCccChhhchhhhcccCceEEEcCCCCchhhHHHHHHHHhc-c
Q 012148          322 DLDKDSAPHYHKAVKFYDALSKQLVHQGHVLDLFACALDQVGVAELKVAVEKTGGLVVLSDSFGHAVFKDSVRRVFHS-G  400 (470)
Q Consensus       322 ~~~~~~~~~~~~~~~fY~~la~~~~~~gisvdlF~~s~~~~~l~~l~~l~~~TGG~v~~y~~f~~~~~~~~l~~~l~~-~  400 (470)
                      +++++++++++++.+||++||++|+++||+||+|+++.+|+|+++|+.|++.|||.+++|++|+.+.|++++++++++ .
T Consensus       315 di~k~~~~~~~~a~~fY~~la~~~~~~gisvDlF~~s~dqvglaem~~l~~~TGG~v~~~~sF~~~~f~~~l~r~~~r~~  394 (761)
T PLN00162        315 DLDKDAAPYYKKAVKFYEGLAKQLVAQGHVLDVFACSLDQVGVAEMKVAVERTGGLVVLAESFGHSVFKDSLRRVFERDG  394 (761)
T ss_pred             ccccchhhhcchHHHHHHHHHHHHHHcCceEEEEEccccccCHHHHhhhHhhcCcEEEEeCCcChHHHHHHHHHHhcccc
Confidence            999998899999999999999999999999999999999999999999999999999999999999999999999953 3


Q ss_pred             ccccceeeEEEEEecccccceeeeecCCeeeeEEEeCcee---cchhhhHh---------hhhhhcCCCccchhhccccc
Q 012148          401 DYDLGLSSKYGFMNFVLYFFLSRIADYPLPVLTIITPLYK---KYLLLAKL---------IYAYMHGADSLFQQDLSLSE  468 (470)
Q Consensus       401 ~~~~~~~~~~~lr~~~~~~~v~~r~S~gl~i~~~~G~~~~---~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~  468 (470)
                      ++++.+||+|+||       |  |||+||+|.++|||++.   ++....++         ...+..++|++|+..+++++
T Consensus       395 ~~~~~~gf~a~~~-------V--rtS~glkv~g~~G~~~s~~~~~~~vsd~~iG~g~T~~w~l~~l~~~~t~av~f~~~~  465 (761)
T PLN00162        395 EGSLGLSFNGTFE-------V--NCSKDVKVQGAIGPCASLEKKGPSVSDTEIGEGGTTAWKLCGLDKKTSLAVFFEVAN  465 (761)
T ss_pred             cccccccceeEEE-------E--EecCCeEEeeeEcCcccccccCCccccccccCCCCceeeecCcCcCCEEEEEEEEcc
Confidence            4567899999999       9  99999999999999973   32111121         22356889999999888764

>KOG1986 consensus Vesicle coat complex COPII, subunit SEC23 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1985 consensus Vesicle coat complex COPII, subunit SEC24/subunit SFB2 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5047 SEC23 Vesicle coat complex COPII, subunit SEC23 [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG1984 consensus Vesicle coat complex COPII, subunit SFB3 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5028 Vesicle coat complex COPII, subunit SEC24/subunit SFB2/subunit SFB3 [Intracellular trafficking and secretion] Back     alignment and domain information
>PTZ00395 Sec24-related protein; Provisional Back     alignment and domain information
>cd01478 Sec23-like Sec23-like: Protein and membrane traffic in eukaryotes is mediated by at least in part by the budding and fusion of intracellular transport vesicles that selectively carry cargo proteins and lipids from donor to acceptor organelles Back     alignment and domain information
>cd01468 trunk_domain trunk domain Back     alignment and domain information
>cd01479 Sec24-like Sec24-like: Protein and membrane traffic in eukaryotes is mediated by at least in part by the budding and fusion of intracellular transport vesicles that selectively carry cargo proteins and lipids from donor to acceptor organelles Back     alignment and domain information
>PF04811 Sec23_trunk: Sec23/Sec24 trunk domain; InterPro: IPR006896 COPII (coat protein complex II)-coated vesicles carry proteins from the endoplasmic reticulum (ER) to the Golgi complex [] Back     alignment and domain information
>PF04810 zf-Sec23_Sec24: Sec23/Sec24 zinc finger; InterPro: IPR006895 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>cd01465 vWA_subgroup VWA subgroup: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) Back     alignment and domain information
>PRK13685 hypothetical protein; Provisional Back     alignment and domain information
>cd01451 vWA_Magnesium_chelatase Magnesium chelatase: Mg-chelatase catalyses the insertion of Mg into protoporphyrin IX (Proto) Back     alignment and domain information
>cd01456 vWA_ywmD_type VWA ywmD type:Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) Back     alignment and domain information
>cd01453 vWA_transcription_factor_IIH_type Transcription factors IIH type: TFIIH is a multiprotein complex that is one of the five general transcription factors that binds RNA polymerase II holoenzyme Back     alignment and domain information
>cd01463 vWA_VGCC_like VWA Voltage gated Calcium channel like: Voltage-gated calcium channels are a complex of five proteins: alpha 1, beta 1, gamma, alpha 2 and delta Back     alignment and domain information
>cd01466 vWA_C3HC4_type VWA C3HC4-type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) Back     alignment and domain information
>TIGR03436 acidobact_VWFA VWFA-related Acidobacterial domain Back     alignment and domain information
>cd01467 vWA_BatA_type VWA BatA type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) Back     alignment and domain information
>cd01472 vWA_collagen von Willebrand factor (vWF) type A domain; equivalent to the I-domain of integrins Back     alignment and domain information
>cd01470 vWA_complement_factors Complement factors B and C2 are two critical proteases for complement activation Back     alignment and domain information
>cd01480 vWA_collagen_alpha_1-VI-type VWA_collagen alpha(VI) type: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions Back     alignment and domain information
>TIGR00868 hCaCC calcium-activated chloride channel protein 1 Back     alignment and domain information
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins Back     alignment and domain information
>cd01461 vWA_interalpha_trypsin_inhibitor vWA_interalpha trypsin inhibitor (ITI): ITI is a glycoprotein composed of three polypeptides- two heavy chains and one light chain (bikunin) Back     alignment and domain information
>PF13519 VWA_2: von Willebrand factor type A domain; PDB: 3IBS_B 3RAG_B 2X5N_A Back     alignment and domain information
>PF13768 VWA_3: von Willebrand factor type A domain Back     alignment and domain information
>PF08033 Sec23_BS: Sec23/Sec24 beta-sandwich domain; InterPro: IPR012990 COPII (coat protein complex II)-coated vesicles carry proteins from the endoplasmic reticulum (ER) to the Golgi complex [] Back     alignment and domain information
>cd01474 vWA_ATR ATR (Anthrax Toxin Receptor): Anthrax toxin is a key virulence factor for Bacillus anthracis, the causative agent of anthrax Back     alignment and domain information
>cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity Back     alignment and domain information
>cd01471 vWA_micronemal_protein Micronemal proteins: The Toxoplasma lytic cycle begins when the parasite actively invades a target cell Back     alignment and domain information
>cd01482 vWA_collagen_alphaI-XII-like Collagen: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions Back     alignment and domain information
>cd01450 vWFA_subfamily_ECM Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) Back     alignment and domain information
>cd01469 vWA_integrins_alpha_subunit Integrins are a class of adhesion receptors that link the extracellular matrix to the cytoskeleton and cooperate with growth factor receptors to promote celll survival, cell cycle progression and cell migration Back     alignment and domain information
>cd01477 vWA_F09G8-8_type VWA F09G8 Back     alignment and domain information
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D Back     alignment and domain information
>smart00327 VWA von Willebrand factor (vWF) type A domain Back     alignment and domain information
>cd01481 vWA_collagen_alpha3-VI-like VWA_collagen alpha 3(VI) like: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions Back     alignment and domain information
>TIGR03788 marine_srt_targ marine proteobacterial sortase target protein Back     alignment and domain information
>cd01476 VWA_integrin_invertebrates VWA_integrin (invertebrates): Integrins are a family of cell surface receptors that have diverse functions in cell-cell and cell-extracellular matrix interactions Back     alignment and domain information
>PF00092 VWA: von Willebrand factor type A domain; InterPro: IPR002035 The von Willebrand factor is a large multimeric glycoprotein found in blood plasma Back     alignment and domain information
>PRK13406 bchD magnesium chelatase subunit D; Provisional Back     alignment and domain information
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit Back     alignment and domain information
>cd00198 vWFA Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) Back     alignment and domain information
>cd01473 vWA_CTRP CTRP for CS protein-TRAP-related protein: Adhesion of Plasmodium to host cells is an important phenomenon in parasite invasion and in malaria associated pathology Back     alignment and domain information
>PTZ00441 sporozoite surface protein 2 (SSP2); Provisional Back     alignment and domain information
>COG1240 ChlD Mg-chelatase subunit ChlD [Coenzyme metabolism] Back     alignment and domain information
>PF04056 Ssl1: Ssl1-like; InterPro: IPR007198 Ssl1-like proteins are 40 kDa subunits of the transcription factor II H complex Back     alignment and domain information
>cd01458 vWA_ku Ku70/Ku80 N-terminal domain Back     alignment and domain information
>cd01454 vWA_norD_type norD type: Denitrifying bacteria contain both membrane bound and periplasmic nitrate reductases Back     alignment and domain information
>cd01462 VWA_YIEM_type VWA YIEM type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) Back     alignment and domain information
>TIGR00578 ku70 ATP-dependent DNA helicase ii, 70 kDa subunit (ku70) Back     alignment and domain information
>cd01464 vWA_subfamily VWA subfamily: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) Back     alignment and domain information
>cd01460 vWA_midasin VWA_Midasin: Midasin is a member of the AAA ATPase family Back     alignment and domain information
>COG4245 TerY Uncharacterized protein encoded in toxicity protection region of plasmid R478, contains von Willebrand factor (vWF) domain [General function prediction only] Back     alignment and domain information
>PF10058 DUF2296: Predicted integral membrane metal-binding protein (DUF2296); InterPro: IPR019273 This domain, found mainly in the eukaryotic lunapark proteins, has no known function [] Back     alignment and domain information
>KOG2884 consensus 26S proteasome regulatory complex, subunit RPN10/PSMD4 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR01053 LSD1 zinc finger domain, LSD1 subclass Back     alignment and domain information
>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional Back     alignment and domain information
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query470
3eg9_A 764 Crystal Structure Of The Mammalian Copii-Coat Prote 1e-98
2nup_A 769 Crystal Structure Of The Human Sec23a24A HETERODIME 2e-98
3efo_A 765 Crystal Structure Of The Mammalian Copii-Coat Prote 1e-97
1m2o_A 768 Crystal Structure Of The Sec23-Sar1 Complex Length 3e-85
2qtv_A 772 Structure Of Sec23-Sar1 Complexed With The Active F 3e-85
2yrc_A59 Solution Structure Of The Zf-Sec23_sec24 From Human 1e-11
2yrd_A59 Solution Structure Of The Zf-Sec23_sec24 From Human 3e-11
3eh2_A 766 Crystal Structure Of The Human Copii-Coat Protein S 4e-09
2nup_B 753 Crystal Structure Of The Human Sec23a24A HETERODIME 4e-09
3egd_B 748 Crystal Structure Of The Mammalian Copii-Coat Prote 6e-09
3eh1_A 751 Crystal Structure Of The Human Copii-Coat Protein S 1e-07
3efo_B 770 Crystal Structure Of The Mammalian Copii-Coat Prote 4e-06
1m2v_B 926 Crystal Structure Of The Yeast Sec2324 HETERODIMER 2e-04
1pcx_A 810 Crystal Structure Of The Copii Coat Subunit, Sec24, 3e-04
>pdb|3EG9|A Chain A, Crystal Structure Of The Mammalian Copii-Coat Protein Sec2324 BOUND TO THE TRANSPORT SIGNAL SEQUENCE OF MEMBRIN Length = 764 Back     alignment and structure 
Iteration: 1

 Score =  356 bits (914), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 187/418 (44%), Positives = 262/418 (62%), Gaps = 28/418 (6%)
Query: 1   MTEFMDL----EAQDGVRMPWNVIPGTKQEASNCVVPVSAIYTPIKAFPVNNNSMPILPY 56
           MT +++     E +DGVR  WNV P ++ EA+  VVPV+A++TP+K  P     +P + Y
Sbjct: 1   MTTYLEFIQQNEERDGVRFSWNVWPSSRLEATRMVVPVAALFTPLKERP----DLPPIQY 56
Query: 57  APLRCR--TCRSILNPFSIVDFAAKIWICPFCFQRNHFPPHYASITDDNLPAELFPQYTT 114
            P+ C   TCR++LNP   VD+ AK+W C FC+QRN FPP YA I++ N PAEL PQ+++
Sbjct: 57  EPVLCSRTTCRAVLNPLCQVDYRAKLWACNFCYQRNQFPPSYAGISELNQPAELLPQFSS 116
Query: 115 IEYEP-PGPGEKSSVPPVFMFVVDTCIIEEEMSFLKSALSQAIDLLPDNSLVGLITFGTL 173
           IEY    GP     +P +F++VVDTC+ +E++  LK ++  ++ LLP  +LVGLITFG +
Sbjct: 117 IEYVVLRGP----QMPLIFLYVVDTCMEDEDLQALKESMQMSLSLLPPTALVGLITFGRM 172
Query: 174 VQVHELGGFGQIIPKTYVFKGSKDVSKDQLLEQLNFFIKKPKPSTGVIAG--VRDGLSSD 231
           VQVHELG  G  I K+YVF+G+KD+S  QL E L        P T    G  V+    S+
Sbjct: 173 VQVHELGCEG--ISKSYVFRGTKDLSAKQLQEMLGL---SKVPLTQATRGPQVQQPPPSN 227
Query: 232 TIARFLVPAFDCEFTLNSVLEELQKDPWPVPPDQRSTRCTGTALSIAASLLGACVPGSGA 291
              RFL P    +  L  +L ELQ+DPWPVP  +R  R +G ALSIA  LL    P +GA
Sbjct: 228 ---RFLQPVQKIDMNLTDLLGELQRDPWPVPQGKRPLRSSGVALSIAVGLLECTFPNTGA 284
Query: 292 RILAFVGGPSTEGPAAIVSKNLSEPIRSHKDLDKDSAPHYHKAVKFYDALSKQLVHQGHV 351
           RI+ F+GGP+T+GP  +V   L  PIRS  D+DKD+A +  K  K ++AL+ +    GHV
Sbjct: 285 RIMMFIGGPATQGPGMVVGDELKTPIRSWHDIDKDNAKYVKKGTKHFEALANRAATTGHV 344
Query: 352 LDLFACALDQVGVAELKVAVEKTGGLVVLSDSFGHAVFKDSVRRVFHS---GDYDLGL 406
           +D++ACALDQ G+ E+K     TGG +V+ DSF  ++FK + +RVF     G + +G 
Sbjct: 345 IDIYACALDQTGLLEMKCCPNLTGGYMVMGDSFNTSLFKQTFQRVFTKDMHGQFKMGF 402
>pdb|2NUP|A Chain A, Crystal Structure Of The Human Sec23a24A HETERODIMER, Complexed With The Snare Protein Sec22b Length = 769 Back     alignment and structure
>pdb|3EFO|A Chain A, Crystal Structure Of The Mammalian Copii-Coat Protein Sec2324 BOUND TO THE TRANSPORT SIGNAL SEQUENCE OF SYNTAXIN 5 Length = 765 Back     alignment and structure
>pdb|1M2O|A Chain A, Crystal Structure Of The Sec23-Sar1 Complex Length = 768 Back     alignment and structure
>pdb|2QTV|A Chain A, Structure Of Sec23-Sar1 Complexed With The Active Fragment Of Sec31 Length = 772 Back     alignment and structure
>pdb|2YRC|A Chain A, Solution Structure Of The Zf-Sec23_sec24 From Human Sec23a Length = 59 Back     alignment and structure
>pdb|2YRD|A Chain A, Solution Structure Of The Zf-Sec23_sec24 From Human Sec23a Mutant V69a Length = 59 Back     alignment and structure
>pdb|3EH2|A Chain A, Crystal Structure Of The Human Copii-Coat Protein Sec24c Length = 766 Back     alignment and structure
>pdb|2NUP|B Chain B, Crystal Structure Of The Human Sec23a24A HETERODIMER, Complexed With The Snare Protein Sec22b Length = 753 Back     alignment and structure
>pdb|3EGD|B Chain B, Crystal Structure Of The Mammalian Copii-Coat Protein Sec23a24A COMPLEXED WITH THE SNARE PROTEIN SEC22 AND BOUND To The Transport Signal Sequence Of Vesicular Stomatitis Virus Glycoprotein Length = 748 Back     alignment and structure
>pdb|3EH1|A Chain A, Crystal Structure Of The Human Copii-Coat Protein Sec24b Length = 751 Back     alignment and structure
>pdb|3EFO|B Chain B, Crystal Structure Of The Mammalian Copii-Coat Protein Sec2324 BOUND TO THE TRANSPORT SIGNAL SEQUENCE OF SYNTAXIN 5 Length = 770 Back     alignment and structure
>pdb|1M2V|B Chain B, Crystal Structure Of The Yeast Sec2324 HETERODIMER Length = 926 Back     alignment and structure
>pdb|1PCX|A Chain A, Crystal Structure Of The Copii Coat Subunit, Sec24, Complexed With A Peptide From The Snare Protein Bet1 Length = 810 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query470
2nut_A 769 Protein transport protein SEC23A; human copii SEC2 1e-114
1m2o_A 768 SEC23, protein transport protein SEC23, SEC23P; zi 1e-103
1m2v_B 926 SEC24, protein transport protein SEC24, SEC24P, SE 5e-82
3efo_B 770 SEC24 related gene family, member D; copii, coat p 3e-69
1pcx_A 810 Protein transport protein SEC24; 2.50A {Saccharomy 6e-67
3eh2_A 766 Protein transport protein SEC24C; copii-coat prote 1e-65
3eh1_A 751 Protein transport protein SEC24B; copii coat prote 1e-63
2yrc_A59 Protein transport protein SEC23A; zinc binding, co 7e-29
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-07
>2nut_A Protein transport protein SEC23A; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_A 3egd_A 3eg9_A 3egx_A 3efo_A Length = 769 Back     alignment and structure
 Score =  352 bits (904), Expect = e-114
 Identities = 178/403 (44%), Positives = 250/403 (62%), Gaps = 19/403 (4%)

Query: 1   MTEFMDL----EAQDGVRMPWNVIPGTKQEASNCVVPVSAIYTPIKAFPVNNNSMPILPY 56
           MT +++     E +DGVR  WNV P ++ EA+  VVPV+A++TP+K  P     +P + Y
Sbjct: 5   MTTYLEFIQQNEERDGVRFSWNVWPSSRLEATRMVVPVAALFTPLKERP----DLPPIQY 60

Query: 57  APLRCR--TCRSILNPFSIVDFAAKIWICPFCFQRNHFPPHYASITDDNLPAELFPQYTT 114
            P+ C   TCR++LNP   VD+ AK+W C FC+QRN FPP YA I++ N PAEL PQ+++
Sbjct: 61  EPVLCSRTTCRAVLNPLCQVDYRAKLWACNFCYQRNQFPPSYAGISELNQPAELLPQFSS 120

Query: 115 IEYEPPGPGEKSSVPPVFMFVVDTCIIEEEMSFLKSALSQAIDLLPDNSLVGLITFGTLV 174
           IEY          +P +F++VVDTC+ +E++  LK ++  ++ LLP  +LVGLITFG +V
Sbjct: 121 IEYVVLRG---PQMPLIFLYVVDTCMEDEDLQALKESMQMSLSLLPPTALVGLITFGRMV 177

Query: 175 QVHELGGFGQIIPKTYVFKGSKDVSKDQLLEQLNFFIKKPKPSTGVIAGVRDGLSSDTIA 234
           QVHELG   + I K+YVF+G+KD+S  QL E L       K                   
Sbjct: 178 QVHELGC--EGISKSYVFRGTKDLSAKQLQEMLGL----SKVPVTQATRGPQVQQPPPSN 231

Query: 235 RFLVPAFDCEFTLNSVLEELQKDPWPVPPDQRSTRCTGTALSIAASLLGACVPGSGARIL 294
           RFL P    +  L  +L ELQ+DPWPVP  +R  R +G ALSIA  LL    P +GARI+
Sbjct: 232 RFLQPVQKIDMNLTDLLGELQRDPWPVPQGKRPLRSSGVALSIAVGLLECTFPNTGARIM 291

Query: 295 AFVGGPSTEGPAAIVSKNLSEPIRSHKDLDKDSAPHYHKAVKFYDALSKQLVHQGHVLDL 354
            F+GGP+T+GP  +V   L  PIRS  D+DKD+A +  K  K ++AL+ +    GHV+D+
Sbjct: 292 MFIGGPATQGPGMVVGDELKTPIRSWHDIDKDNAKYVKKGTKHFEALANRAATTGHVIDI 351

Query: 355 FACALDQVGVAELKVAVEKTGGLVVLSDSFGHAVFKDSVRRVF 397
           +ACALDQ G+ E+K     TGG +V+ DSF  ++FK + +RVF
Sbjct: 352 YACALDQTGLLEMKCCPNLTGGYMVMGDSFNTSLFKQTFQRVF 394
>1m2o_A SEC23, protein transport protein SEC23, SEC23P; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1m2v_A 2qtv_A* Length = 768 Back     alignment and structure
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 Back     alignment and structure
>3efo_B SEC24 related gene family, member D; copii, coat protein, transport signal, disease mutation, endoplasmic reticulum, ER-golgi transport, golgi apparatus, membrane; 2.70A {Homo sapiens} PDB: 3eg9_B Length = 770 Back     alignment and structure
>1pcx_A Protein transport protein SEC24; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1pd0_A 1pd1_A Length = 810 Back     alignment and structure
>3eh2_A Protein transport protein SEC24C; copii-coat protein, vesicle transport, cytoplasm, endoplasmic reticulum, ER-golgi transport, golgi apparatus; 2.35A {Homo sapiens} Length = 766 Back     alignment and structure
>3eh1_A Protein transport protein SEC24B; copii coat protein, vesicle transport, transport signal sequence, cytoplasm, endoplasmic reticulum; 1.80A {Homo sapiens} PDB: 2nut_B 2nup_B 3egd_B 3egx_B Length = 751 Back     alignment and structure
>2yrc_A Protein transport protein SEC23A; zinc binding, copii, coat protein complex-II, endoplasmic reticulum, golgi, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yrd_A Length = 59 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query470
1m2o_A 768 SEC23, protein transport protein SEC23, SEC23P; zi 100.0
2nut_A 769 Protein transport protein SEC23A; human copii SEC2 100.0
3eh1_A 751 Protein transport protein SEC24B; copii coat prote 100.0
1pcx_A 810 Protein transport protein SEC24; 2.50A {Saccharomy 100.0
3eh2_A 766 Protein transport protein SEC24C; copii-coat prote 100.0
3efo_B 770 SEC24 related gene family, member D; copii, coat p 100.0
1m2v_B 926 SEC24, protein transport protein SEC24, SEC24P, SE 100.0
2yrc_A59 Protein transport protein SEC23A; zinc binding, co 99.64
3ibs_A218 Conserved hypothetical protein BATB; structural ge 98.75
4fx5_A 464 VON willebrand factor type A; structural genomics, 98.7
2b2x_A223 Integrin alpha-1; computational design, antibody-a 98.32
1v7p_C200 Integrin alpha-2; snake venom, C-type lectin, anta 98.29
4b4t_W268 RPN10, 26S proteasome regulatory subunit RPN10; hy 98.29
1ijb_A202 VON willebrand factor; dinucleotide-binding fold, 98.29
1q0p_A223 Complement factor B; VON willebrand factor, MAC-1, 98.28
1atz_A189 VON willebrand factor; collagen-binding, hemostasi 98.24
1pt6_A213 Integrin alpha-1; cell adhesion; 1.87A {Homo sapie 98.23
1shu_X182 Anthrax toxin receptor 2; alpha/beta rossmann fold 98.22
4hqf_A281 Thrombospondin-related anonymous protein, trap; ma 98.21
2odp_A 509 Complement C2; C3/C5 convertase, complement serin 98.13
1rrk_A 497 Complement factor B; BB, hydrolase; 2.00A {Homo sa 98.12
1n3y_A198 Integrin alpha-X; alpha/beta rossmann fold, cell a 98.09
2x31_A189 Magnesium-chelatase 60 kDa subunit; ligase, bacter 98.07
3n2n_F185 Anthrax toxin receptor 1; rossmann fold; 1.80A {Ho 98.04
4hqo_A266 Sporozoite surface protein 2; malaria, gliding mot 98.03
2x5n_A192 SPRPN10, 26S proteasome regulatory subunit RPN10; 97.99
1mf7_A194 Integrin alpha M; cell adhesion; 1.25A {Homo sapie 97.98
1mjn_A179 Integrin alpha-L; rossmann fold, immune system; 1. 97.81
3hrz_D 741 Complement factor B; serine protease, glycosilated 97.73
3zqk_A199 VON willebrand factor; blood clotting, adamts-13, 97.65
2xgg_A178 Microneme protein 2; A/I domain, cell adhesion, hy 97.63
3k6s_A 1095 Integrin alpha-X; cell receptor, adhesion molecule 97.31
1jey_B 565 KU80; double-strand DNA break repair, non-homologo 97.22
3rag_A242 Uncharacterized protein; structural genomics, PSI- 95.59
2ww8_A 893 RRGA, cell WALL surface anchor family protein; IGG 95.38
1jey_A 609 KU70; double-strand DNA break repair, non-homologo 95.31
3fcs_B 690 Integrin beta-3; beta propeller, rossmann fold, EG 95.15
3t3p_B472 Integrin beta-3; integrin, cell adhesion, blood cl 93.94
1yvr_A538 RO autoantigen, 60-kDa SS-A/RO ribonucleoprotein, 93.92
3vi3_B454 Integrin beta-1; beta propeller fold, rossman fold 93.25
2iue_A212 Pactolus I-domain; membrane protein, CD, ITC, limb 93.14
3v4v_B503 Integrin beta-7; cell adhesion, madcam-1, membrane 92.24
3k6s_B 687 Integrin beta-2; cell receptor, adhesion molecule, 89.39
2j9u_B76 VPS36, vacuolar protein sorting-associated protein 80.87
2a20_A62 Regulating synaptic membrane exocytosis protein 2; 80.26
>1m2o_A SEC23, protein transport protein SEC23, SEC23P; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1m2v_A 2qtv_A* Back     alignment and structure
Probab=100.00  E-value=2.2e-91  Score=772.99  Aligned_cols=437  Identities=37%  Similarity=0.682  Sum_probs=391.6

Q ss_pred             CCcccccCCCeeeecCCCCCCCHHHHhhCCCCeEEEEccCCCCCCCCCCCCCCCCCCccccC--CCeeeCCCceEEcCCc
Q 012148            2 TEFMDLEAQDGVRMPWNVIPGTKQEASNCVVPVSAIYTPIKAFPVNNNSMPILPYAPLRCRT--CRSILNPFSIVDFAAK   79 (470)
Q Consensus         2 ~~~~~~~~~~~iR~T~~~~P~t~~~~~~~~iPlg~vv~P~~~~~~~~~~ip~v~~~~~RC~~--C~aYiNp~~~~~~~g~   79 (470)
                      |||+++|+++|||+||++||.+++++++++||||++|+||++.    +++|+++++|+||++  |+|||||||+|+.+|+
T Consensus         1 ~~~~~~~~~~~vR~T~n~~P~t~~~~~~~~lPlg~vi~P~~~~----~~~p~v~~~pvRC~~~~CrayiNPf~~~~~~~~   76 (768)
T 1m2o_A            1 MDFETNEDINGVRFTWNVFPSTRSDANSNVVPVGCLYTPLKEY----DELNVAPYNPVVCSGPHCKSILNPYCVIDPRNS   76 (768)
T ss_dssp             -CHHHHHHHHSEEESBSEEESSHHHHHHTCSCSEEEECTTCCC----TTCCEECSCCCBCCSTTTCCBCCTTSCEETTTT
T ss_pred             CCcccccCcCceEeeeccCCCCHHHHhcCCCCeEEEEEeCCCC----CCCCcCCCCCCccCCCCCCeEECCceEEeCCCC
Confidence            7899999999999999999999999999999999999999975    579999999999999  9999999999999999


Q ss_pred             eEEeCCCCCCCCCCccccCCCCCCCCcccCCCcceEEEeCCCCCCCCCCCCEEEEEEEcccchhhHHHHHHHHHHHhhcC
Q 012148           80 IWICPFCFQRNHFPPHYASITDDNLPAELFPQYTTIEYEPPGPGEKSSVPPVFMFVVDTCIIEEEMSFLKSALSQAIDLL  159 (470)
Q Consensus        80 ~w~C~~C~~~N~vp~~y~~~~~~~~~pEL~~~~~tvey~~~~~~~~~~~~p~~vFvID~S~~~~~~~~l~~~l~~~l~~l  159 (470)
                      +|+||||++.|.+|++|+..+..++||||  +++||||.+++..   +.||+|+||||+|.++++++.++++|+++|+.|
T Consensus        77 ~W~C~~C~~~N~~P~~y~~~~~~~~~pEL--~~~tvEy~~p~~~---~~pp~~vFvIDvs~~~~~l~~l~~sl~~~L~~L  151 (768)
T 1m2o_A           77 SWSCPICNSRNHLPPQYTNLSQENMPLEL--QSTTIEYITNKPV---TVPPIFFFVVDLTSETENLDSLKESIITSLSLL  151 (768)
T ss_dssp             EECCTTTCCCCBCCGGGCC---CCCCGGG--TCSEEEEECSCCC---CSCCEEEEEEECCSCHHHHHHHHHHHHHHHHTS
T ss_pred             EEEcccCCCCCCCChHHccCCcccCChhh--ccCCEEEECCCCC---CCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhC
Confidence            99999999999999999865667889999  5999999998643   479999999999999999999999999999999


Q ss_pred             CCCceEEEEEECCeEEEEEcCCCCCCCCceeeecCCcccCHHHHHHHh-hcccCCCCCCCccccCc-----cCCCCc--c
Q 012148          160 PDNSLVGLITFGTLVQVHELGGFGQIIPKTYVFKGSKDVSKDQLLEQL-NFFIKKPKPSTGVIAGV-----RDGLSS--D  231 (470)
Q Consensus       160 p~~~~VglITfd~~V~~y~l~~~~~~~~~~~v~~g~~~~t~~~i~~~~-~l~~~~~~~~~~~~p~~-----~d~~~~--~  231 (470)
                      |++++|||||||+.||||+++ .+. +++++||.|+++++.+++++++ ++++..       +|++     .|++.+  .
T Consensus       152 p~~~~VGlITf~~~V~~y~l~-~~~-~~~~~V~~g~k~~~~~q~~~~l~~l~~~~-------~~~~~~~~~~~~f~p~~~  222 (768)
T 1m2o_A          152 PPNALIGLITYGNVVQLHDLS-SET-IDRCNVFRGDREYQLEALTEMLTGQKPTG-------PGGAASHLPNAMNKVTPF  222 (768)
T ss_dssp             CTTCEEEEEEESSEEEECCCS-SSS-SEEEEEEETTSCCCHHHHHHHHHSCCCC----------------------CCSS
T ss_pred             CCCCEEEEEEECCEEEEEECC-CCC-CcceeeecCCccccHHHHHHHHhhccccc-------cCCccccccccccccccC
Confidence            999999999999999999999 776 8999999999999999999998 765410       1111     111111  2


Q ss_pred             ccccceeeccchHHHHHHHHHhccCCCCCCCCCCCCccchhHHHHHHHHHHhccCCCCCcEEEEEecCCCCCCCceeecC
Q 012148          232 TIARFLVPAFDCEFTLNSVLEELQKDPWPVPPDQRSTRCTGTALSIAASLLGACVPGSGARILAFVGGPSTEGPAAIVSK  311 (470)
Q Consensus       232 ~~~~~lv~~~~~~~~i~~lL~~L~~~~~~~~~~~~~~~~~G~AL~~A~~ll~~~~~~~GG~Ii~F~~g~pt~GpG~l~~~  311 (470)
                      +.++||+|++||++.|.++|++|++++|++++++++.||+|+||++|..+|+.+..+.||||++|++|+||.|||+|+.+
T Consensus       223 ~~~~~lv~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~~~~G~Al~~A~~ll~~~~~~~GGrI~~F~sg~pt~GpG~l~~r  302 (768)
T 1m2o_A          223 SLNRFFLPLEQVEFKLNQLLENLSPDQWSVPAGHRPLRATGSALNIASLLLQGCYKNIPARIILFASGPGTVAPGLIVNS  302 (768)
T ss_dssp             SGGGGSEEHHHHHHHHHHHHHTCCCSCSCCCTTBCCCCCHHHHHHHHHHHHHHHCTTSCCEEEEEESSCCCSSSSCCSCS
T ss_pred             CccceeeeHHHHHHHHHHHHHhccccccccCCCCCCcccHHHHHHHHHHHHhhccCCCCcEEEEEeCCCCCCCCcccccc
Confidence            36899999999999999999999998888888899999999999999999997777899999999999999999999999


Q ss_pred             CCCCcccCCCCCCCCCCCccchhHHHHHHHHHHHHhcCeEEEEeeccCCccChhhchhhhcccCceEEEcCCCCchhhHH
Q 012148          312 NLSEPIRSHKDLDKDSAPHYHKAVKFYDALSKQLVHQGHVLDLFACALDQVGVAELKVAVEKTGGLVVLSDSFGHAVFKD  391 (470)
Q Consensus       312 ~~~~~~r~~~~~~~~~~~~~~~~~~fY~~la~~~~~~gisvdlF~~s~~~~~l~~l~~l~~~TGG~v~~y~~f~~~~~~~  391 (470)
                      +.++++|+|+|++++++++++++.+||++||++|+++||+||+|+++.+|+|+++|+.|++.|||.+++|++|+.++|.+
T Consensus       303 ~~~~~~rs~~d~~k~~~~~~~~a~~fY~~la~~~~~~gi~VDlF~~~~~~~dla~l~~l~~~TGG~v~~y~~f~~~~~~~  382 (768)
T 1m2o_A          303 ELKDPLRSHHDIDSDHAQHYKKACKFYNQIAQRVAANGHTVDIFAGCYDQIGMSEMKQLTDSTGGVLLLTDAFSTAIFKQ  382 (768)
T ss_dssp             BTTSCCCCHHHHHHTCCTTHHHHHHHHHHHHHHHHHHTCEEEEEEECSSCCSHHHHHHHHHHHTCCEEEESCTTSHHHHH
T ss_pred             ccccccccccccccchhhhcCchHHHHHHHHHHHHHCCeEEEEEEccCCccChHHHhhHhhcCCceEEEcCCCchHHHHH
Confidence            99999999999999988999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhc-cccccceeeEEEEEecccccceeeeecCCeeeeEEEeCceec----------------chhhhHhhhhhhc
Q 012148          392 SVRRVFHS-GDYDLGLSSKYGFMNFVLYFFLSRIADYPLPVLTIITPLYKK----------------YLLLAKLIYAYMH  454 (470)
Q Consensus       392 ~l~~~l~~-~~~~~~~~~~~~lr~~~~~~~v~~r~S~gl~i~~~~G~~~~~----------------~~~~~~~~~~~~~  454 (470)
                      ++++++++ ...++++||+|+||       |  |||+||+|++++||++..                +.++.++   +..
T Consensus       383 ~l~r~l~~~~~~~~~~gf~a~mr-------V--r~S~gl~v~~~~G~~~~~~~~~~~~vsd~~ig~~~t~~~~l---~~~  450 (768)
T 1m2o_A          383 SYLRLFAKDEEGYLKMAFNGNMA-------V--KTSKDLKVQGLIGHASAVKKTDANNISESEIGIGATSTWKM---ASL  450 (768)
T ss_dssp             HHHHTTCBCTTSSBSCEEEEEEE-------E--EECTTEEEEEEESSCEECCSCCCSCBCSSCSSBCSCSEEEE---EEE
T ss_pred             HHHHHHhhccccccceEEEEEEE-------E--EecCCceEEEeecCccccccccccccCcceeccCCCceEEe---ecC
Confidence            99999954 33456899999999       9  999999999999999953                3344444   568


Q ss_pred             CCCccchhhccccc
Q 012148          455 GADSLFQQDLSLSE  468 (470)
Q Consensus       455 ~~~~~~~~~~~~~~  468 (470)
                      ++|++|+.++++++
T Consensus       451 ~~d~t~~v~f~~~~  464 (768)
T 1m2o_A          451 SPYHSYAIFFEIAN  464 (768)
T ss_dssp             CTTCCEEEEEEECC
T ss_pred             CCCCEEEEEEEecc
Confidence            99999999998776
>2nut_A Protein transport protein SEC23A; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_A 3egd_A 3eg9_A 3egx_A 3efo_A Back     alignment and structure
>3eh1_A Protein transport protein SEC24B; copii coat protein, vesicle transport, transport signal sequence, cytoplasm, endoplasmic reticulum; 1.80A {Homo sapiens} PDB: 2nut_B 2nup_B 3egd_B 3egx_B Back     alignment and structure
>1pcx_A Protein transport protein SEC24; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1pd0_A 1pd1_A Back     alignment and structure
>3eh2_A Protein transport protein SEC24C; copii-coat protein, vesicle transport, cytoplasm, endoplasmic reticulum, ER-golgi transport, golgi apparatus; 2.35A {Homo sapiens} Back     alignment and structure
>3efo_B SEC24 related gene family, member D; copii, coat protein, transport signal, disease mutation, endoplasmic reticulum, ER-golgi transport, golgi apparatus, membrane; 2.70A {Homo sapiens} PDB: 3eg9_B Back     alignment and structure
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Back     alignment and structure
>2yrc_A Protein transport protein SEC23A; zinc binding, copii, coat protein complex-II, endoplasmic reticulum, golgi, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yrd_A Back     alignment and structure
>3ibs_A Conserved hypothetical protein BATB; structural genomics, protein structure, midwest center for S genomics, MCSG, PSI-2; HET: MSE; 2.10A {Bacteroides thetaiotaomicron} Back     alignment and structure
>4fx5_A VON willebrand factor type A; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, blood clotting; HET: MSE; 1.73A {Catenulispora acidiphila} Back     alignment and structure
>2b2x_A Integrin alpha-1; computational design, antibody-antigen complex, immune syste; 2.20A {Rattus norvegicus} SCOP: c.62.1.1 Back     alignment and structure
>1v7p_C Integrin alpha-2; snake venom, C-type lectin, antagonist, cell adhes glycoprotein, toxin-cell adhesion complex; HET: NAG; 1.90A {Homo sapiens} SCOP: c.62.1.1 PDB: 1aox_A 1dzi_A Back     alignment and structure
>4b4t_W RPN10, 26S proteasome regulatory subunit RPN10; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>1ijb_A VON willebrand factor; dinucleotide-binding fold, blood clotting; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 1ijk_A 1auq_A 1u0n_A 3hxo_A 1uex_C 3hxq_A 1sq0_A 1m10_A 1fns_A 1oak_A 1u0o_C Back     alignment and structure
>1q0p_A Complement factor B; VON willebrand factor, MAC-1, I domain, A domain, hydrolase; 1.80A {Homo sapiens} SCOP: c.62.1.1 Back     alignment and structure
>1atz_A VON willebrand factor; collagen-binding, hemostasis, dinucleotide binding fold; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 4dmu_B 2adf_A 1fe8_A 1ao3_A Back     alignment and structure
>1pt6_A Integrin alpha-1; cell adhesion; 1.87A {Homo sapiens} SCOP: c.62.1.1 PDB: 4a0q_A 1qcy_A 1qc5_A 1qc5_B 1ck4_A 1mhp_A Back     alignment and structure
>1shu_X Anthrax toxin receptor 2; alpha/beta rossmann fold, membrane protein; 1.50A {Homo sapiens} SCOP: c.62.1.1 PDB: 1tzn_a 1sht_X 1t6b_Y* Back     alignment and structure
>4hqf_A Thrombospondin-related anonymous protein, trap; malaria, parasite motility, I domain, TSR domain, receptor O sporozoite, vaccine target; 2.20A {Plasmodium falciparum} PDB: 4hqk_A 2bbx_A Back     alignment and structure
>2odp_A Complement C2; C3/C5 convertase, complement serin protease, human complement system, glycoprotein, SP, VWFA,; HET: NAG; 1.90A {Homo sapiens} PDB: 2odq_A* 2i6q_A* 2i6s_A* Back     alignment and structure
>1rrk_A Complement factor B; BB, hydrolase; 2.00A {Homo sapiens} SCOP: b.47.1.2 c.62.1.1 PDB: 1rs0_A* 1rtk_A* 2win_I* 1dle_A Back     alignment and structure
>1n3y_A Integrin alpha-X; alpha/beta rossmann fold, cell adhesion; 1.65A {Homo sapiens} SCOP: c.62.1.1 Back     alignment and structure
>2x31_A Magnesium-chelatase 60 kDa subunit; ligase, bacteriochlorophyll biosynthesis, photosynthesis; 7.50A {Rhodobacter capsulatus} Back     alignment and structure
>3n2n_F Anthrax toxin receptor 1; rossmann fold; 1.80A {Homo sapiens} SCOP: c.62.1.1 Back     alignment and structure
>4hqo_A Sporozoite surface protein 2; malaria, gliding motility, VWA domain, TSR domain, extensibl ribbon, receptor on sporozoite, vaccine target; HET: FUC BGC; 2.19A {Plasmodium vivax} PDB: 4hql_A* 4hqn_A* Back     alignment and structure
>2x5n_A SPRPN10, 26S proteasome regulatory subunit RPN10; nuclear protein, nucleus, ubiquitin; 1.30A {Schizosaccharomyces pombe} Back     alignment and structure
>1mf7_A Integrin alpha M; cell adhesion; 1.25A {Homo sapiens} SCOP: c.62.1.1 PDB: 1na5_A 1jlm_A 1ido_A 1m1u_A 3q3g_G 1n9z_A 1bhq_1 1bho_1 1idn_1 3qa3_G Back     alignment and structure
>1mjn_A Integrin alpha-L; rossmann fold, immune system; 1.30A {Homo sapiens} SCOP: c.62.1.1 PDB: 3hi6_A 1mq8_B* 3eoa_I 3eob_I 1rd4_A* 1lfa_A 1zon_A 1zoo_A 1zop_A 1dgq_A 1xdd_A* 1xdg_A* 1xuo_A* 3e2m_A* 3bqn_B* 1cqp_A* 3bqm_B* 2ica_A* 2o7n_A* 3m6f_A* ... Back     alignment and structure
>3hrz_D Complement factor B; serine protease, glycosilated, multi-domain, complement SYST convertase, complement alternate pathway; HET: NAG P6G; 2.20A {Homo sapiens} PDB: 2xwj_I* 3hs0_D* 2ok5_A* 2xwb_F* Back     alignment and structure
>3zqk_A VON willebrand factor; blood clotting, adamts-13, force sensor, VON willebrand DISE domain, haemostasis; HET: NAG; 1.70A {Homo sapiens} PDB: 3ppv_A 3ppx_A 3ppw_A 3ppy_A 3gxb_A* Back     alignment and structure
>2xgg_A Microneme protein 2; A/I domain, cell adhesion, hydrolase; 2.05A {Toxoplasma gondii} Back     alignment and structure
>3k6s_A Integrin alpha-X; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_A* 3k72_A* Back     alignment and structure
>1jey_B KU80; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.2 c.62.1.4 PDB: 1jeq_B* Back     alignment and structure
>3rag_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tructural genomics; 1.80A {Alicyclobacillus acidocaldarius subsp} Back     alignment and structure
>2ww8_A RRGA, cell WALL surface anchor family protein; IGG, pilus, CNA_B, adhesin, integrin, cell adhesion; HET: EPE; 1.90A {Streptococcus pneumoniae} Back     alignment and structure
>1jey_A KU70; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.1 c.62.1.3 PDB: 1jeq_A* 3rzx_B Back     alignment and structure
>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB: 4g1e_B* 3ije_B* 4g1m_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B* Back     alignment and structure
>3t3p_B Integrin beta-3; integrin, cell adhesion, blood clotting, fibrinogen, platele; HET: NAG BMA MAN; 2.20A {Homo sapiens} PDB: 3t3m_B* 3nig_B* 3nif_B* 3nid_B* 2vdr_B* 2vc2_B* 2vdk_B* 2vdm_B* 2vdn_B* 2vdl_B* 2vdp_B* 2vdq_B* 2vdo_B* 3fcu_B* 1txv_B* 1ty3_B* 1ty5_B* 1ty6_B* 1ty7_B* 1tye_B* Back     alignment and structure
>1yvr_A RO autoantigen, 60-kDa SS-A/RO ribonucleoprotein, 60 kDa; heat repeat, VON willebrand factor A, rossmann fold, midas motif', RNA binding protein; 1.95A {Xenopus laevis} SCOP: a.118.25.1 c.62.1.5 PDB: 1yvp_A 2i91_A Back     alignment and structure
>3vi3_B Integrin beta-1; beta propeller fold, rossman fold, beta sandwich, fibronecti receptor, cell adhesion-immune system complex; HET: NAG BMA MAN; 2.90A {Homo sapiens} PDB: 3vi4_B* Back     alignment and structure
>2iue_A Pactolus I-domain; membrane protein, CD, ITC, limbs, midas, admidas, membrane, integrin, titration, rossman fold, cell adhesion, transmembrane; NMR {Mus musculus} Back     alignment and structure
>3v4v_B Integrin beta-7; cell adhesion, madcam-1, membrane; HET: NAG BMA MAN 0DU; 3.10A {Homo sapiens} PDB: 3v4p_B* Back     alignment and structure
>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_B* 3k72_B* Back     alignment and structure
>2j9u_B VPS36, vacuolar protein sorting-associated protein 36; zinc-finger, metal-binding, protein transport; 2.00A {Saccharomyces cerevisiae} SCOP: g.41.11.1 Back     alignment and structure
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 470
d2qtva3271 c.62.1.2 (A:120-390) Sec23 {Baker's yeast (Sacchar 2e-93
d1pd0a3252 c.62.1.2 (A:301-552) Sec24 {Baker's yeast (Sacchar 5e-55
d2qtva575 g.41.10.1 (A:45-119) Sec23 {Baker's yeast (Sacchar 5e-29
d1pd0a585 g.41.10.1 (A:216-300) Sec24 {Baker's yeast (Saccha 3e-19
d2qtva2176 b.2.8.1 (A:2-44,A:391-523) Sec23 {Baker's yeast (S 1e-15
>d2qtva3 c.62.1.2 (A:120-390) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 271 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: vWA-like
superfamily: vWA-like
family: Trunk domain of Sec23/24
domain: Sec23
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  282 bits (722), Expect = 2e-93
 Identities = 106/271 (39%), Positives = 160/271 (59%), Gaps = 3/271 (1%)

Query: 128 VPPVFMFVVDTCIIEEEMSFLKSALSQAIDLLPDNSLVGLITFGTLVQVHELGGFGQIIP 187
           VPP+F FVVD     E +  LK ++  ++ LLP N+L+GLIT+G +VQ+H+L      I 
Sbjct: 1   VPPIFFFVVDLTSETENLDSLKESIITSLSLLPPNALIGLITYGNVVQLHDLSSET--ID 58

Query: 188 KTYVFKGSKDVSKDQLLEQLNFF-IKKPKPSTGVIAGVRDGLSSDTIARFLVPAFDCEFT 246
           +  VF+G ++   + L E L       P  +   +    + ++  ++ RF +P    EF 
Sbjct: 59  RCNVFRGDREYQLEALTEMLTGQKPTGPGGAASHLPNAMNKVTPFSLNRFFLPLEQVEFK 118

Query: 247 LNSVLEELQKDPWPVPPDQRSTRCTGTALSIAASLLGACVPGSGARILAFVGGPSTEGPA 306
           LN +LE L  D W VP   R  R TG+AL+IA+ LL  C     ARI+ F  GP T  P 
Sbjct: 119 LNQLLENLSPDQWSVPAGHRPLRATGSALNIASLLLQGCYKNIPARIILFASGPGTVAPG 178

Query: 307 AIVSKNLSEPIRSHKDLDKDSAPHYHKAVKFYDALSKQLVHQGHVLDLFACALDQVGVAE 366
            IV+  L +P+RSH D+D D A HY KA KFY+ +++++   GH +D+FA   DQ+G++E
Sbjct: 179 LIVNSELKDPLRSHHDIDSDHAQHYKKACKFYNQIAQRVAANGHTVDIFAGCYDQIGMSE 238

Query: 367 LKVAVEKTGGLVVLSDSFGHAVFKDSVRRVF 397
           +K   + TGG+++L+D+F  A+FK S  R+F
Sbjct: 239 MKQLTDSTGGVLLLTDAFSTAIFKQSYLRLF 269
>d1pd0a3 c.62.1.2 (A:301-552) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 252 Back     information, alignment and structure
>d2qtva5 g.41.10.1 (A:45-119) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 75 Back     information, alignment and structure
>d1pd0a5 g.41.10.1 (A:216-300) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 85 Back     information, alignment and structure
>d2qtva2 b.2.8.1 (A:2-44,A:391-523) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 176 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query470
d2qtva3271 Sec23 {Baker's yeast (Saccharomyces cerevisiae) [T 100.0
d1pd0a3252 Sec24 {Baker's yeast (Saccharomyces cerevisiae) [T 100.0
d2qtva575 Sec23 {Baker's yeast (Saccharomyces cerevisiae) [T 99.85
d1pd0a585 Sec24 {Baker's yeast (Saccharomyces cerevisiae) [T 99.81
d1pd0a2177 Sec24 {Baker's yeast (Saccharomyces cerevisiae) [T 98.55
d1pd0a2177 Sec24 {Baker's yeast (Saccharomyces cerevisiae) [T 98.41
d2qtva2176 Sec23 {Baker's yeast (Saccharomyces cerevisiae) [T 98.22
d1atza_184 von Willebrand factor A3 domain, vWA3 {Human (Homo 98.11
d1shux_181 Capillary morphogenesis protein 2 domain {Human (H 98.06
d1q0pa_209 Complement factor B domain {Human (Homo sapiens) [ 98.05
d1n3ya_189 Integrin alpha-x beta2 {Human (Homo sapiens) [TaxI 97.83
d1ijba_202 von Willebrand factor A1 domain, vWA1 {Human (Homo 97.74
d1pt6a_192 Integrin alpha1-beta1 {Human (Homo sapiens) [TaxId 97.68
d1jeya2220 Ku70 subunit N-terminal domain {Human (Homo sapien 97.65
d1v7pc_193 Integrin alpha2-beta1 {Human (Homo sapiens) [TaxId 97.65
d1jeyb2236 Ku80 subunit N-terminal domain {Human (Homo sapien 97.58
d1mf7a_194 Integrin alpha M (CR3, CD11b/CD18, Mac-1 alpha sub 97.25
d1mjna_179 Integrin CD11a/CD18 (Leukocyte function associated 97.15
d1tyeb2248 Integrin beta A domain {Human (Homo sapiens) [TaxI 97.09
d2qtva2176 Sec23 {Baker's yeast (Saccharomyces cerevisiae) [T 95.86
d1yvra2174 60-kda SS-A/Ro ribonucleoprotein, RoRNP {African c 95.47
d1y0ja139 Erythroid transcription factor GATA-1 {Mouse (Mus 81.77
d2j9ub147 Vacuolar protein-sorting-associated protein 36, VP 81.08
>d2qtva3 c.62.1.2 (A:120-390) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: vWA-like
superfamily: vWA-like
family: Trunk domain of Sec23/24
domain: Sec23
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=5.4e-56  Score=433.35  Aligned_cols=268  Identities=39%  Similarity=0.709  Sum_probs=238.9

Q ss_pred             CCCEEEEEEEcccchhhHHHHHHHHHHHhhcCCCCceEEEEEECCeEEEEEcCCCCCCCCceeeecCCcccCHHHHHHHh
Q 012148          128 VPPVFMFVVDTCIIEEEMSFLKSALSQAIDLLPDNSLVGLITFGTLVQVHELGGFGQIIPKTYVFKGSKDVSKDQLLEQL  207 (470)
Q Consensus       128 ~~p~~vFvID~S~~~~~~~~l~~~l~~~l~~lp~~~~VglITfd~~V~~y~l~~~~~~~~~~~v~~g~~~~t~~~i~~~~  207 (470)
                      .||+||||||+|.++++++.++++|+++|+.||++++|||||||+.||||+++ ... .++.+|+.|.++++.+++++++
T Consensus         1 ~Pp~yvFvIDvs~~a~~~~~l~~~l~~~l~~lp~~~~VgiITfd~~v~~y~l~-~~~-~~~~~v~~g~~~~~~~~~~~~~   78 (271)
T d2qtva3           1 VPPIFFFVVDLTSETENLDSLKESIITSLSLLPPNALIGLITYGNVVQLHDLS-SET-IDRCNVFRGDREYQLEALTEML   78 (271)
T ss_dssp             SCCEEEEEEECCSCHHHHHHHHHHHHHHHTTSCTTCEEEEEEESSEEEEEECS-CSS-CCEEEEEESSSCCCHHHHHHHH
T ss_pred             CCCEEEEEEECCccHHHHHHHHHHHHHHHHhCCCCCEEEEEEECCEEEEEECC-CCc-CccceeccCccccCHHHHHHHh
Confidence            38999999999999999999999999999999999999999999999999999 665 8899999999999999999988


Q ss_pred             hcccCC--CCCCCccccCccCCCCccccccceeeccchHHHHHHHHHhccCCCCCCCCCCCCccchhHHHHHHHHHHhcc
Q 012148          208 NFFIKK--PKPSTGVIAGVRDGLSSDTIARFLVPAFDCEFTLNSVLEELQKDPWPVPPDQRSTRCTGTALSIAASLLGAC  285 (470)
Q Consensus       208 ~l~~~~--~~~~~~~~p~~~d~~~~~~~~~~lv~~~~~~~~i~~lL~~L~~~~~~~~~~~~~~~~~G~AL~~A~~ll~~~  285 (470)
                      +.....  ..+++.+..++.+.+++ .+++|++|++++++.|..+|++|++.+|+.+++.++.||+|+||.+|..+|+.+
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~l~~~~e~~~~i~~lL~~L~~~~~~~~~~~~~~~~~G~Al~~A~~ll~~~  157 (271)
T d2qtva3          79 TGQKPTGPGGAASHLPNAMNKVTPF-SLNRFFLPLEQVEFKLNQLLENLSPDQWSVPAGHRPLRATGSALNIASLLLQGC  157 (271)
T ss_dssp             HCCC-----------------CCTT-CGGGGSEEHHHHHHHHHHHHHHCCCCCCCCCTTBCCCCCHHHHHHHHHHHHHHH
T ss_pred             hccccccccccccccccccccccCC-ccccccccHHHHHHHHHHHHHHhccCcccCCCCCCcccchHHHHHHHHHHHHhh
Confidence            754311  11122223333443432 568999999999999999999999988888889999999999999999999977


Q ss_pred             CCCCCcEEEEEecCCCCCCCceeecCCCCCcccCCCCCCCCCCCccchhHHHHHHHHHHHHhcCeEEEEeeccCCccChh
Q 012148          286 VPGSGARILAFVGGPSTEGPAAIVSKNLSEPIRSHKDLDKDSAPHYHKAVKFYDALSKQLVHQGHVLDLFACALDQVGVA  365 (470)
Q Consensus       286 ~~~~GG~Ii~F~~g~pt~GpG~l~~~~~~~~~r~~~~~~~~~~~~~~~~~~fY~~la~~~~~~gisvdlF~~s~~~~~l~  365 (470)
                      ..+.||||++|++|+||.|||+|+.+++++++|+|++++++++++++++.+||++||.+|+++||+||+|+++.+++|++
T Consensus       158 ~~~~gGkI~~F~sg~pt~GpG~l~~r~~~~~~rs~~d~~k~~~~~~~~a~~fY~~la~~~~~~~isvDlF~~s~~~~dl~  237 (271)
T d2qtva3         158 YKNIPARIILFASGPGTVAPGLIVNSELKDPLRSHHDIDSDHAQHYKKACKFYNQIAQRVAANGHTVDIFAGCYDQIGMS  237 (271)
T ss_dssp             CTTSCEEEEEEESSCCCSSSSCSSCSBTTSCCCCHHHHHTTCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEECSSCCSHH
T ss_pred             ccCCCcEEEEEeCCCCCCCCccccccccccccCCccchhhhhhhhhhhHHHHHHHHHHHHHHCCeEEEEEEecCccCChH
Confidence            78999999999999999999999999999999999999999989999999999999999999999999999999999999


Q ss_pred             hchhhhcccCceEEEcCCCCchhhHHHHHHHHh
Q 012148          366 ELKVAVEKTGGLVVLSDSFGHAVFKDSVRRVFH  398 (470)
Q Consensus       366 ~l~~l~~~TGG~v~~y~~f~~~~~~~~l~~~l~  398 (470)
                      +|++|++.|||.+++|++|+.+.|+++|+|+|+
T Consensus       238 ~l~~l~~~TGG~v~~~~~F~~~~f~~~l~r~~~  270 (271)
T d2qtva3         238 EMKQLTDSTGGVLLLTDAFSTAIFKQSYLRLFA  270 (271)
T ss_dssp             HHTHHHHTTTCCEEEESCTTSHHHHHHHHHTTC
T ss_pred             HHHhHHhhCCceEEEeCCcCHHHHHHHHHHHhc
Confidence            999999999999999999999999999999884
>d1pd0a3 c.62.1.2 (A:301-552) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2qtva5 g.41.10.1 (A:45-119) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1pd0a5 g.41.10.1 (A:216-300) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1pd0a2 b.2.8.1 (A:133-215,A:553-646) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1pd0a2 b.2.8.1 (A:133-215,A:553-646) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2qtva2 b.2.8.1 (A:2-44,A:391-523) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1atza_ c.62.1.1 (A:) von Willebrand factor A3 domain, vWA3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1shux_ c.62.1.1 (X:) Capillary morphogenesis protein 2 domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1q0pa_ c.62.1.1 (A:) Complement factor B domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1n3ya_ c.62.1.1 (A:) Integrin alpha-x beta2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ijba_ c.62.1.1 (A:) von Willebrand factor A1 domain, vWA1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1pt6a_ c.62.1.1 (A:) Integrin alpha1-beta1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jeya2 c.62.1.3 (A:34-253) Ku70 subunit N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1v7pc_ c.62.1.1 (C:) Integrin alpha2-beta1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jeyb2 c.62.1.4 (B:6-241) Ku80 subunit N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1mf7a_ c.62.1.1 (A:) Integrin alpha M (CR3, CD11b/CD18, Mac-1 alpha subunit) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1mjna_ c.62.1.1 (A:) Integrin CD11a/CD18 (Leukocyte function associated antigen-1, LFA-1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1tyeb2 c.62.1.1 (B:107-354) Integrin beta A domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2qtva2 b.2.8.1 (A:2-44,A:391-523) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1yvra2 c.62.1.5 (A:364-537) 60-kda SS-A/Ro ribonucleoprotein, RoRNP {African clawed frog (Xenopus laevis) [TaxId: 8355]} Back     information, alignment and structure
>d1y0ja1 g.39.1.1 (A:200-238) Erythroid transcription factor GATA-1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2j9ub1 g.41.11.1 (B:115-161) Vacuolar protein-sorting-associated protein 36, VPS36 {Saccharomyces cerevisiae [TaxId: 4932]} Back     information, alignment and structure