Citrus Sinensis ID: 012176
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 469 | 2.2.26 [Sep-21-2011] | |||||||
| Q9LIS3 | 460 | UDP-glucuronate 4-epimera | yes | no | 0.938 | 0.956 | 0.781 | 0.0 | |
| Q9LPC1 | 434 | UDP-glucuronate 4-epimera | no | no | 0.837 | 0.905 | 0.663 | 1e-163 | |
| O81312 | 430 | UDP-glucuronate 4-epimera | no | no | 0.842 | 0.918 | 0.656 | 1e-162 | |
| O22141 | 437 | UDP-glucuronate 4-epimera | no | no | 0.735 | 0.789 | 0.754 | 1e-161 | |
| Q9STI6 | 436 | UDP-glucuronate 4-epimera | no | no | 0.748 | 0.805 | 0.745 | 1e-153 | |
| Q9M0B6 | 429 | UDP-glucuronate 4-epimera | no | no | 0.874 | 0.955 | 0.618 | 1e-151 | |
| P39858 | 334 | Protein CapI OS=Staphyloc | yes | no | 0.675 | 0.949 | 0.470 | 5e-78 | |
| Q04871 | 334 | Uncharacterized 37.6 kDa | N/A | no | 0.686 | 0.964 | 0.454 | 4e-75 | |
| Q58455 | 326 | Uncharacterized protein M | yes | no | 0.663 | 0.953 | 0.430 | 4e-70 | |
| O54067 | 341 | UDP-glucuronate 5'-epimer | yes | no | 0.682 | 0.938 | 0.401 | 5e-65 |
| >sp|Q9LIS3|GAE6_ARATH UDP-glucuronate 4-epimerase 6 OS=Arabidopsis thaliana GN=GAE6 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 731 bits (1887), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 361/462 (78%), Positives = 405/462 (87%), Gaps = 22/462 (4%)
Query: 1 MASPPDTSKTIKLERYNSYLRRLHVTKMLHSSSKLFFRATILIALVLILFFTLNHPPLSD 60
+++ DTSKT+KLERYNSYLR++H TK+L++SSK+ FRAT+L+ALVL+L F +N+PPLSD
Sbjct: 3 LSATADTSKTVKLERYNSYLRKIHSTKVLNASSKVLFRATLLVALVLVLIFAINYPPLSD 62
Query: 61 NTGESGDNNSNNKNNPRNLFTHQHSLLSSSFFSSSFS---TGGAEWEKQVRHSATPRRPN 117
+ + + H+ S LS+ FSSS S GGA WEK+VR S+T +RP+
Sbjct: 63 SRAAAAHH------------LHRRSFLSTGLFSSSSSSSSIGGAAWEKRVRQSSTAKRPH 110
Query: 118 GMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEG 177
G++VLVTGAAGFVGSHCSLAL+KRGDGVLG DNFN YYDPSLKRARQ+LL+K QVFIVEG
Sbjct: 111 GLSVLVTGAAGFVGSHCSLALRKRGDGVLGFDNFNDYYDPSLKRARQELLEKQQVFIVEG 170
Query: 178 DLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQ 237
DLND PLL KLFDVVPFTH+LHLAAQAGVRYAM+NPQSY+ASNIAGFVNLLEV K+ NPQ
Sbjct: 171 DLNDGPLLRKLFDVVPFTHILHLAAQAGVRYAMKNPQSYIASNIAGFVNLLEVAKAANPQ 230
Query: 238 PSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIYGLALTGLRF 297
P+IVWASSSSVYGLNT+ PFSE HRTDQPASLYAATKKAGEEIAHTYNHIYGL+LTGLRF
Sbjct: 231 PAIVWASSSSVYGLNTENPFSEEHRTDQPASLYAATKKAGEEIAHTYNHIYGLSLTGLRF 290
Query: 298 FTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGA----- 352
FTVYGPWGRPDMAYFFFTKDIL GK+ID+Y+TQD++EVARDFTYIDD+VKGCVGA
Sbjct: 291 FTVYGPWGRPDMAYFFFTKDILHGKSIDIYRTQDNQEVARDFTYIDDIVKGCVGALDTAE 350
Query: 353 --TGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRNGDVPYTH 410
TGSGGKKRG AQLRVYNLGNTSPVPVGRLVSILE LL TKAKKH+I+MPRNGDVPYTH
Sbjct: 351 KSTGSGGKKRGQAQLRVYNLGNTSPVPVGRLVSILEGLLGTKAKKHLIKMPRNGDVPYTH 410
Query: 411 ANVSLAYKDFGYKPTTDLAAGLRKFVKWYVSYYGIQPRVKKE 452
ANVSLAYKDFGYKPTTDLAAGLRKFVKWYV YYGIQPRVKKE
Sbjct: 411 ANVSLAYKDFGYKPTTDLAAGLRKFVKWYVGYYGIQPRVKKE 452
|
Involved in the synthesis of the negatively charged monosaccharide that forms the backbone of pectic cell wall components. Arabidopsis thaliana (taxid: 3702) EC: 5EC: .EC: 1EC: .EC: 3EC: .EC: 6 |
| >sp|Q9LPC1|GAE2_ARATH UDP-glucuronate 4-epimerase 2 OS=Arabidopsis thaliana GN=GAE2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 574 bits (1479), Expect = e-163, Method: Compositional matrix adjust.
Identities = 284/428 (66%), Positives = 333/428 (77%), Gaps = 35/428 (8%)
Query: 23 LHVTKMLHSSSKLFFRATILIALVLILFFTLNHPPLSDNTGESGDNNSNNKNNPRNLFTH 82
LH T+ S +KL F + + L+ I F+ P+S N ++ R+L T
Sbjct: 24 LHRTRWQSSVAKLAFWSLVFFGLLFIFFY---RSPIS-----------NPDSSRRSLRT- 68
Query: 83 QHSLLSSSFFSSSFSTGGAEWEKQVRHSATPRRPNGMTVLVTGAAGFVGSHCSLALKKRG 142
+S GG WEK+VR SA R NG++VLVTGAAGFVG+H S ALK+RG
Sbjct: 69 -------------YSWGGPAWEKRVRSSARVRTRNGVSVLVTGAAGFVGTHVSAALKRRG 115
Query: 143 DGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTHVLHLAA 202
DGVLGLDNFN YYD SLKR+RQ LL++ VFIVEGD+ND LL KLF+VVPFTHV+HLAA
Sbjct: 116 DGVLGLDNFNDYYDTSLKRSRQALLERSGVFIVEGDINDLSLLKKLFEVVPFTHVMHLAA 175
Query: 203 QAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHR 262
QAGVRYAM+NP SYV SNIAGFVNLLEVCKS NPQP+IVWASSSSVYGLNT+VPFSE R
Sbjct: 176 QAGVRYAMENPGSYVHSNIAGFVNLLEVCKSANPQPAIVWASSSSVYGLNTKVPFSEKDR 235
Query: 263 TDQPASLYAATKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGK 322
TDQPASLYAATKKAGEEIAHTYNHIYGL+LTGLRFFTVYGPWGRPDMAYFFFT+DIL+GK
Sbjct: 236 TDQPASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILKGK 295
Query: 323 TIDVYKTQDDREVARDFTYIDDVVKGCVGA-------TGSGGKKRGPAQLRVYNLGNTSP 375
I +++ + VARDFTYIDD+VKGC+GA TGSGGKKRG AQLRV+NLGNTSP
Sbjct: 296 AISIFEGANHGTVARDFTYIDDIVKGCLGALDTAEKSTGSGGKKRGAAQLRVFNLGNTSP 355
Query: 376 VPVGRLVSILENLLNTKAKKHVIRMPRNGDVPYTHANVSLAYKDFGYKPTTDLAAGLRKF 435
VPV LVSILE LL KAK++++++PRNGDVP+THAN+S A ++FGYKP+TDL GL+KF
Sbjct: 356 VPVTDLVSILERLLKVKAKRNMMKLPRNGDVPFTHANISSAQREFGYKPSTDLQTGLKKF 415
Query: 436 VKWYVSYY 443
V+WY+ YY
Sbjct: 416 VRWYLGYY 423
|
Involved in the synthesis of the negatively charged monosaccharide that forms the backbone of pectic cell wall components. Arabidopsis thaliana (taxid: 3702) EC: 5 EC: . EC: 1 EC: . EC: 3 EC: . EC: 6 |
| >sp|O81312|GAE3_ARATH UDP-glucuronate 4-epimerase 3 OS=Arabidopsis thaliana GN=GAE3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 571 bits (1471), Expect = e-162, Method: Compositional matrix adjust.
Identities = 281/428 (65%), Positives = 330/428 (77%), Gaps = 33/428 (7%)
Query: 23 LHVTKMLHSSSKLFFRATILIALVLILFFTLNHPPLSDNTGESGDNNSNNKNNPRNLFTH 82
H T+ S +KL F + + + L+ I F+ P+S N + + R+L T
Sbjct: 21 FHRTRWQSSVAKLAFWSLVFVGLIFIFFY---RSPVSSNPADP---------SRRSLRT- 67
Query: 83 QHSLLSSSFFSSSFSTGGAEWEKQVRHSATPRRPNGMTVLVTGAAGFVGSHCSLALKKRG 142
+S GG WEK+VR SA R G +VLVTGAAGFVG+H S ALK+RG
Sbjct: 68 -------------YSWGGPAWEKRVRSSARLRTRRGFSVLVTGAAGFVGTHVSAALKRRG 114
Query: 143 DGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTHVLHLAA 202
DGVLGLDNFN YYDPSLKRARQ LL++ VF+VEGD+NDA LL KLF+VVPFTHV+HLAA
Sbjct: 115 DGVLGLDNFNDYYDPSLKRARQALLERSGVFVVEGDINDAALLKKLFEVVPFTHVMHLAA 174
Query: 203 QAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHR 262
QAGVRYAM+NP SYV SNIAGFVNLLEVCKS NPQP+IVWASSSSVYGLNT+VPFSE R
Sbjct: 175 QAGVRYAMENPSSYVHSNIAGFVNLLEVCKSANPQPAIVWASSSSVYGLNTKVPFSEKDR 234
Query: 263 TDQPASLYAATKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGK 322
TDQPASLYAATKKAGEEIAHTYNHIYGL+LTGLRFFTVYGPWGRPDMAYFFFT+DIL+GK
Sbjct: 235 TDQPASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILKGK 294
Query: 323 TIDVYKTQDDREVARDFTYIDDVVKGCVGA-------TGSGGKKRGPAQLRVYNLGNTSP 375
I +++ + VARDFTYIDD+VKGC+GA TGSGGKKRG AQLRV+NLGNTSP
Sbjct: 295 AISIFEGVNHGTVARDFTYIDDIVKGCLGALDTAEKSTGSGGKKRGAAQLRVFNLGNTSP 354
Query: 376 VPVGRLVSILENLLNTKAKKHVIRMPRNGDVPYTHANVSLAYKDFGYKPTTDLAAGLRKF 435
VPV LV+ILE LL KAK++++++PRNGDV +THAN+S A ++ GYKPTTDL GL+KF
Sbjct: 355 VPVTDLVTILERLLKVKAKRNIMKLPRNGDVQFTHANISSAQRELGYKPTTDLQTGLKKF 414
Query: 436 VKWYVSYY 443
+WY+ YY
Sbjct: 415 ARWYLGYY 422
|
Involved in the synthesis of the negatively charged monosaccharide that forms the backbone of pectic cell wall components. Arabidopsis thaliana (taxid: 3702) EC: 5 EC: . EC: 1 EC: . EC: 3 EC: . EC: 6 |
| >sp|O22141|GAE4_ARATH UDP-glucuronate 4-epimerase 4 OS=Arabidopsis thaliana GN=GAE4 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 568 bits (1465), Expect = e-161, Method: Compositional matrix adjust.
Identities = 267/354 (75%), Positives = 306/354 (86%), Gaps = 9/354 (2%)
Query: 99 GGAEWEKQVRHSATPRRP--NGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYD 156
GG WEK++R SA R NG+TVLVTGAAGFVG+H S ALK+RGDGV+GLDNFN YYD
Sbjct: 75 GGPAWEKRLRSSARIRTSTNNGITVLVTGAAGFVGTHVSAALKRRGDGVIGLDNFNDYYD 134
Query: 157 PSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSY 216
PSLKRAR+ LL++ +FIVEGD+ND LL KLF +V FTHV+HLAAQAGVRYAM+NP SY
Sbjct: 135 PSLKRARRALLERSGIFIVEGDINDVELLRKLFKIVSFTHVMHLAAQAGVRYAMENPSSY 194
Query: 217 VASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKA 276
V SNIAGFVNLLE+CKSVNPQP+IVWASSSSVYGLNT+VPFSE +TDQPASLYAATKKA
Sbjct: 195 VHSNIAGFVNLLEICKSVNPQPAIVWASSSSVYGLNTKVPFSEKDKTDQPASLYAATKKA 254
Query: 277 GEEIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVA 336
GEEIAHTYNHIYGL+LTGLRFFTVYGPWGRPDMAYFFFTKDIL+GK+I ++++ + VA
Sbjct: 255 GEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTKDILKGKSISIFESANHGTVA 314
Query: 337 RDFTYIDDVVKGCVGA-------TGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLL 389
RDFTYIDD+VKGC+ A TGSGGKKRGPAQLRV+NLGNTSPVPV LV ILE L
Sbjct: 315 RDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGPAQLRVFNLGNTSPVPVSDLVRILERQL 374
Query: 390 NTKAKKHVIRMPRNGDVPYTHANVSLAYKDFGYKPTTDLAAGLRKFVKWYVSYY 443
KAKK++I+MPRNGDVP+THAN+SLA ++ GYKPTTDL GL+KFV+WY+SYY
Sbjct: 375 KVKAKKNLIKMPRNGDVPFTHANISLAQRELGYKPTTDLQTGLKKFVRWYLSYY 428
|
Involved in the synthesis of the negatively charged monosaccharide that forms the backbone of pectic cell wall components. Arabidopsis thaliana (taxid: 3702) EC: 5 EC: . EC: 1 EC: . EC: 3 EC: . EC: 6 |
| >sp|Q9STI6|GAE5_ARATH UDP-glucuronate 4-epimerase 5 OS=Arabidopsis thaliana GN=GAE5 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 542 bits (1397), Expect = e-153, Method: Compositional matrix adjust.
Identities = 269/361 (74%), Positives = 305/361 (84%), Gaps = 10/361 (2%)
Query: 93 SSSFST---GGAEWEKQVRHSATPRRPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLD 149
SSS S GG+ WEKQVR SA PR G+TVLVTGA+GFVG+H S+AL++RGDGVLGLD
Sbjct: 67 SSSISAAKYGGSHWEKQVRKSARPRSHGGLTVLVTGASGFVGTHVSIALRRRGDGVLGLD 126
Query: 150 NFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYA 209
NFN YYDP LKRARQ LL++ VF+VEGD+NDA LL KLFDVV FTHV+HLAAQAGVRYA
Sbjct: 127 NFNRYYDPKLKRARQGLLERSGVFVVEGDINDAVLLRKLFDVVLFTHVMHLAAQAGVRYA 186
Query: 210 MQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASL 269
MQNP SYV SNIAGFVNLLEV KS NPQP+IVWASSSSVYGLN++VPFSE RTDQPASL
Sbjct: 187 MQNPGSYVNSNIAGFVNLLEVSKSANPQPAIVWASSSSVYGLNSKVPFSEKDRTDQPASL 246
Query: 270 YAATKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKT 329
YAATKKAGE IAHTYNHIYGL+LTGLRFFTVYGPWGRPDMAYFFFTKDIL+GKTI V+++
Sbjct: 247 YAATKKAGEGIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTKDILKGKTITVFES 306
Query: 330 QDDREVARDFTYIDDVVKGCVGA-------TGSGGKKRGPAQLRVYNLGNTSPVPVGRLV 382
D VARDFTYIDD+VKGC+GA TGSGGKK+GPA R+YNLGNTSPVPV +LV
Sbjct: 307 PDKGSVARDFTYIDDIVKGCLGALDTAEKSTGSGGKKKGPAMFRIYNLGNTSPVPVTKLV 366
Query: 383 SILENLLNTKAKKHVIRMPRNGDVPYTHANVSLAYKDFGYKPTTDLAAGLRKFVKWYVSY 442
+ILE LL KAKK ++ +PRNGDV +THAN++LA + GYKP DL GL+KFVKWY+ +
Sbjct: 367 TILEKLLKMKAKKKIMPLPRNGDVEFTHANITLAQAELGYKPAVDLETGLKKFVKWYMGF 426
Query: 443 Y 443
Y
Sbjct: 427 Y 427
|
Involved in the synthesis of the negatively charged monosaccharide that forms the backbone of pectic cell wall components. Arabidopsis thaliana (taxid: 3702) EC: 5 EC: . EC: 1 EC: . EC: 3 EC: . EC: 6 |
| >sp|Q9M0B6|GAE1_ARATH UDP-glucuronate 4-epimerase 1 OS=Arabidopsis thaliana GN=GAE1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 536 bits (1380), Expect = e-151, Method: Compositional matrix adjust.
Identities = 280/453 (61%), Positives = 332/453 (73%), Gaps = 43/453 (9%)
Query: 5 PDTSKTIKLERYNSYLRRLHVTKMLHSSSKLFFRATILIALVLILFFTLNHPPLSDNTGE 64
P T K++R N R+LH + S+S +F A LIAL
Sbjct: 10 PSTPGKFKIDRSN---RQLH--RCFASTSTMFLWALFLIALTA----------------- 47
Query: 65 SGDNNSNNKNNPRNLFTHQHSLLSSSFFSSSFSTGGAEWEKQVRHSATPRRPNGMTVLVT 124
+ + Q + S S + ++ S GG +WEKQVR SA R G++VLVT
Sbjct: 48 -------------SYLSFQSFVDSGSRYLTA-SWGGIQWEKQVRTSAQIHRSGGISVLVT 93
Query: 125 GAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPL 184
GA GFVGSH SLAL+KRGDGV+GLDNFN+YYDPSLKRAR+ LL +F+VEGDLNDA L
Sbjct: 94 GATGFVGSHVSLALRKRGDGVVGLDNFNNYYDPSLKRARRSLLSSRGIFVVEGDLNDAKL 153
Query: 185 LTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWAS 244
L KLFDVV FTHV+HLAAQAGVRYA++NPQSYV SNIAG VNLLE+CK+ NPQP+IVWAS
Sbjct: 154 LAKLFDVVAFTHVMHLAAQAGVRYALENPQSYVHSNIAGLVNLLEICKAANPQPAIVWAS 213
Query: 245 SSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIYGLALTGLRFFTVYGPW 304
SSSVYGLN +VPFSES RTDQPASLYAATKKAGEEI HTYNHIYGLA+TGLRFFTVYGPW
Sbjct: 214 SSSVYGLNEKVPFSESDRTDQPASLYAATKKAGEEITHTYNHIYGLAITGLRFFTVYGPW 273
Query: 305 GRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGA-------TGSGG 357
GRPDMAYF FT++ILQGK I +Y+ ++ ++ARDFTYIDD+VKGC+G+ TGSGG
Sbjct: 274 GRPDMAYFSFTRNILQGKPITIYRGKNRVDLARDFTYIDDIVKGCLGSLDSSGKSTGSGG 333
Query: 358 KKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRNGDVPYTHANVSLAY 417
KKRG A R++NLGNTSPV V LV ILE L KAK++ + MP NGDVP+THAN+S A
Sbjct: 334 KKRGAAPYRIFNLGNTSPVTVPILVDILEKHLKVKAKRNFVEMPGNGDVPFTHANISSAR 393
Query: 418 KDFGYKPTTDLAAGLRKFVKWYVSYYGIQPRVK 450
+FGYKPTTDL GL+KFV+WY+SYYG + K
Sbjct: 394 NEFGYKPTTDLETGLKKFVRWYLSYYGYNTKAK 426
|
Involved in the synthesis of the negatively charged monosaccharide that forms the backbone of pectic cell wall components. Arabidopsis thaliana (taxid: 3702) EC: 5 EC: . EC: 1 EC: . EC: 3 EC: . EC: 6 |
| >sp|P39858|CAPI_STAAU Protein CapI OS=Staphylococcus aureus GN=capI PE=3 SV=1 | Back alignment and function description |
|---|
Score = 292 bits (747), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 160/340 (47%), Positives = 215/340 (63%), Gaps = 23/340 (6%)
Query: 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGD 178
M +L+TG AGF+GSH + L K+G V+G+D+ N YY SLK R K + K +
Sbjct: 1 MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKENFTFNKVK 60
Query: 179 LNDAPLLTKLF-DVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQ 237
L + L+K+F D P V++LAAQAGVRY+++NP++Y+ SNI GF+N+LE + N Q
Sbjct: 61 LENYDDLSKVFVDEQPEV-VVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ 119
Query: 238 PSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIYGLALTGLRF 297
++++ASSSSVYG NT PFS S D P SLYAATKK+ E +AHTY+H+Y L TGLRF
Sbjct: 120 -NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRF 178
Query: 298 FTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVV----------- 346
FTVYGPWGRPDMA F FTK I+ + IDVY + + RDFTY+DD+V
Sbjct: 179 FTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGN---MMRDFTYVDDIVEAISRLVKKPA 235
Query: 347 ---KGCVGATGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRN 403
K GA G P +VYN+GN SPV + V +EN L +A+K+ + + +
Sbjct: 236 SPNKEWSGADPDPGSSYAP--YKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDL-QP 292
Query: 404 GDVPYTHANVSLAYKDFGYKPTTDLAAGLRKFVKWYVSYY 443
GDVP T+ANV ++D +KP T + G+ KFV WY+ YY
Sbjct: 293 GDVPETYANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYY 332
|
Required for the biosynthesis of type 1 capsular polysaccharide. Staphylococcus aureus (taxid: 1280) EC: 4 EC: . EC: - EC: . EC: - EC: . EC: - |
| >sp|Q04871|YCL2_ECO11 Uncharacterized 37.6 kDa protein in cld 5'region OS=Escherichia coli O111:H- PE=3 SV=1 | Back alignment and function description |
|---|
Score = 282 bits (722), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 154/339 (45%), Positives = 208/339 (61%), Gaps = 17/339 (5%)
Query: 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGD 178
M LVTGAAGF+G H S L + G V+G+DN N YYD SLK+AR +LL + + D
Sbjct: 1 MKYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKID 60
Query: 179 LNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQP 238
L D +T LF F V + VRY+++NP +Y SN+ GF+N+LE C+ N
Sbjct: 61 LADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRH-NKIQ 119
Query: 239 SIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIYGLALTGLRFF 298
+++ASSSSVYGLN ++PFS D P SLYAATKKA E +AHTY+H+YGL TGLRFF
Sbjct: 120 HLLYASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSHLYGLPATGLRFF 179
Query: 299 TVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCV-------- 350
TVYGPWGRPDMA F FTK +L+GK+IDVY ++ RDFTYIDD+ + +
Sbjct: 180 TVYGPWGRPDMALFKFTKAMLEGKSIDVYNYG---KMKRDFTYIDDIAEAIIRLQDVIPH 236
Query: 351 ----GATGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRNGDV 406
+G A RVYN+GN+SPV + + LE+ L +AKK+++ + + GDV
Sbjct: 237 ADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALGIEAKKNMLPL-QPGDV 295
Query: 407 PYTHANVSLAYKDFGYKPTTDLAAGLRKFVKWYVSYYGI 445
T A+ Y+ G+ P T + G++ FV WY +Y +
Sbjct: 296 LETSADTKALYEVIGFTPETTVKDGVKNFVNWYRDFYKV 334
|
Escherichia coli O111:H- (taxid: 168927) |
| >sp|Q58455|Y1055_METJA Uncharacterized protein MJ1055 OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=MJ1055 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 265 bits (678), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 140/325 (43%), Positives = 208/325 (64%), Gaps = 14/325 (4%)
Query: 120 TVLVTGAAGFVGSHCSLALKKRGDG--VLGLDNFNSYYDPSLKRARQKLLQKHQVF-IVE 176
+LVTG+AGF+G H S L + V+G+DN N+YY+P LK R ++L+ ++ + ++
Sbjct: 5 NILVTGSAGFIGFHLSKYLMDNYEDLKVIGIDNLNNYYNPVLKEKRNEILKNYENYTFIK 64
Query: 177 GDLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNP 236
D +D L + ++HL AQAGVRY++QNP +Y+ SN G +N+ E + +
Sbjct: 65 LDFSDWDDLVENLKDKEIDLIVHLGAQAGVRYSLQNPWAYIKSNEMGTLNIFEFARRFDI 124
Query: 237 QPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIYGLALTGLR 296
+ +V+ASSSSVYG N ++PFSE R D+P SLYA+TK++ E +AH Y+H+YG+ + GLR
Sbjct: 125 E-KVVYASSSSVYGGNRKIPFSEDDRVDKPISLYASTKRSNELMAHVYHHLYGIKMIGLR 183
Query: 297 FFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGATGSG 356
FFTVYG +GRPDMAYF F K+IL GK I+VY + + RDFTYI DVV G + A
Sbjct: 184 FFTVYGEYGRPDMAYFKFAKNILLGKEIEVYNYGN---MERDFTYISDVVDGILRAI--- 237
Query: 357 GKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRNGDVPYTHANVSLA 416
+ ++NLGN+ PV + + ++E LN KAKK + M ++GDV T+A++S +
Sbjct: 238 ---KKDFDYEIFNLGNSKPVKLMYFIELIEKYLNKKAKKKFLPM-QDGDVLRTYADLSKS 293
Query: 417 YKDFGYKPTTDLAAGLRKFVKWYVS 441
K GYKP + GL++F W++
Sbjct: 294 EKLLGYKPKVTIEEGLKRFCNWFLE 318
|
Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (taxid: 243232) |
| >sp|O54067|LPSL_RHIME UDP-glucuronate 5'-epimerase OS=Rhizobium meliloti (strain 1021) GN=lspL PE=3 SV=2 | Back alignment and function description |
|---|
Score = 248 bits (634), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 136/339 (40%), Positives = 198/339 (58%), Gaps = 19/339 (5%)
Query: 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVF-IVEG 177
M L+TG AGF+G H + L G V+G D YYD +LK R +LQ+ F V
Sbjct: 1 MRYLITGTAGFIGFHVAKRLIDEGHFVVGFDGMTPYYDVTLKERRHAILQRSNGFKAVTA 60
Query: 178 DLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQ 237
L D L + ++ ++HLAAQAGVRY+++NP++YV +N+ G N+LE+ K++ P+
Sbjct: 61 MLEDRAALDRAAELAEPEVIIHLAAQAGVRYSLENPKAYVDANLVGSWNMLELAKAIAPK 120
Query: 238 PSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIYGLALTGLRF 297
++ AS+SS+YG N ++PF+E+ R D+P +LYAATKK+ E +AH+Y H+Y + T RF
Sbjct: 121 -HLMLASTSSIYGANEKIPFAEADRADEPMTLYAATKKSMELMAHSYAHLYKVPTTSFRF 179
Query: 298 FTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGATG--- 354
FTVYGPWGRPDMA F F I G+ ID+Y + ++RDFTYIDD+V+ V +
Sbjct: 180 FTVYGPWGRPDMALFKFVDAIHNGRPIDIY---GEGRMSRDFTYIDDLVESIVRLSHVPP 236
Query: 355 SGGKKRGP----------AQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRNG 404
S + P A RV N G PV + V +E + A +++ M + G
Sbjct: 237 SEENRVAPEKATDTLSRHAPFRVVNTGGGQPVELMTFVETVEKAVGRPAIHNMLPM-QQG 295
Query: 405 DVPYTHANVSLAYKDFGYKPTTDLAAGLRKFVKWYVSYY 443
DVP T A+ L G+KP+ + G+ +FV+WY Y
Sbjct: 296 DVPRTFASPDLLEALTGFKPSVSVEEGVARFVEWYDQNY 334
|
Rhizobium meliloti (strain 1021) (taxid: 266834) EC: 5 EC: . EC: 1 EC: . EC: 3 EC: . EC: 1 EC: 2 |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 469 | ||||||
| 224055839 | 457 | predicted protein [Populus trichocarpa] | 0.959 | 0.984 | 0.804 | 0.0 | |
| 224129172 | 456 | predicted protein [Populus trichocarpa] | 0.955 | 0.982 | 0.797 | 0.0 | |
| 225433491 | 451 | PREDICTED: UDP-glucuronate 4-epimerase 6 | 0.921 | 0.957 | 0.799 | 0.0 | |
| 357462761 | 447 | UDP-D-glucuronic acid 4-epimerase [Medic | 0.923 | 0.968 | 0.797 | 0.0 | |
| 449442397 | 463 | PREDICTED: UDP-glucuronate 4-epimerase 6 | 0.965 | 0.978 | 0.777 | 0.0 | |
| 388523005 | 447 | unknown [Medicago truncatula] | 0.923 | 0.968 | 0.795 | 0.0 | |
| 147854365 | 459 | hypothetical protein VITISV_041351 [Viti | 0.914 | 0.934 | 0.796 | 0.0 | |
| 84468266 | 451 | putative NAD dependent epimerase [Trifol | 0.946 | 0.984 | 0.777 | 0.0 | |
| 283488497 | 453 | UDP-D-glucuronic acid 4-epimerase [Gossy | 0.948 | 0.982 | 0.775 | 0.0 | |
| 297831166 | 461 | hypothetical protein ARALYDRAFT_898926 [ | 0.940 | 0.956 | 0.780 | 0.0 |
| >gi|224055839|ref|XP_002298679.1| predicted protein [Populus trichocarpa] gi|118482268|gb|ABK93061.1| unknown [Populus trichocarpa] gi|222845937|gb|EEE83484.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 786 bits (2029), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 383/476 (80%), Positives = 422/476 (88%), Gaps = 26/476 (5%)
Query: 1 MASPPDTSKTIKLERYNSYLRRLHVTKMLHSSSKLFFRATILIALVLILFFTLNHPPLSD 60
MASPPDTSKTIKLERYNSYLRRLH TK+L++SSKL FRAT+LIALVLILFFTLN+PPLSD
Sbjct: 1 MASPPDTSKTIKLERYNSYLRRLHSTKVLNASSKLLFRATLLIALVLILFFTLNYPPLSD 60
Query: 61 NTGESGDNNSNNKNNPRNLFTHQHSLLSSSFFSSSFSTGGAEWEKQVRHSATPRRPNGMT 120
N P + H H+ LS++FF+SS + GGA WEKQVRHS+TP+R NG++
Sbjct: 61 NI-------------PNHAHLHHHNFLSTAFFTSS-AGGGAAWEKQVRHSSTPKRRNGLS 106
Query: 121 VLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLN 180
VLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDP+LKRARQKLL +H+VFIVEGDLN
Sbjct: 107 VLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPTLKRARQKLLLRHEVFIVEGDLN 166
Query: 181 DAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSI 240
DA LL KLFDVVPFTH+LHLAAQAGVRYAMQNPQSYV+SNIAGFVNLLEV K+ NPQP+I
Sbjct: 167 DASLLRKLFDVVPFTHILHLAAQAGVRYAMQNPQSYVSSNIAGFVNLLEVAKAANPQPAI 226
Query: 241 VWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIYGLALTGLRFFTV 300
VWASSSSVYGLNTQVPFSE RTDQPASLYAATKKAGEEIAHTYNHIYGL+LTGLRFFTV
Sbjct: 227 VWASSSSVYGLNTQVPFSELDRTDQPASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFTV 286
Query: 301 YGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGA-------T 353
YGPWGRPDMAYFFFTKDILQGK IDVY+TQDD++VARDFTYIDDVVKGC+GA T
Sbjct: 287 YGPWGRPDMAYFFFTKDILQGKPIDVYQTQDDKQVARDFTYIDDVVKGCLGALDTAEKST 346
Query: 354 GSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRNGDVPYTHANV 413
GSGGKK+GPAQLRVYNLGNTSPVPV LVSILE LL+TKAKKHVI+MPRNGDVPYTHANV
Sbjct: 347 GSGGKKKGPAQLRVYNLGNTSPVPVANLVSILEGLLSTKAKKHVIKMPRNGDVPYTHANV 406
Query: 414 SLAYKDFGYKPTTDLAAGLRKFVKWYVSYYGIQPRVKKENGFSTTTSTIQHPDESA 469
+LA+KDFGYKP+TDLA GLRKFVKWYV+YYGIQ RVKK + ++ +HP+ESA
Sbjct: 407 TLAFKDFGYKPSTDLATGLRKFVKWYVNYYGIQTRVKKGSAINS-----EHPEESA 457
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224129172|ref|XP_002328908.1| predicted protein [Populus trichocarpa] gi|222839338|gb|EEE77675.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 779 bits (2012), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 379/475 (79%), Positives = 418/475 (88%), Gaps = 27/475 (5%)
Query: 1 MASPPDTSKTIKLERYNSYLRRLHVTKMLHSSSKLFFRATILIALVLILFFTLNHPPLSD 60
MASPP TSKT+KLERYNSYLRRLH TK+L++SSKL FR T+LIALVLILFFTLN+PPLSD
Sbjct: 1 MASPPHTSKTLKLERYNSYLRRLHSTKVLNASSKLIFRVTLLIALVLILFFTLNYPPLSD 60
Query: 61 NTGESGDNNSNNKNNPRNLFTHQHSLLSSSFFSSSFSTGGAEWEKQVRHSATPRRPNGMT 120
NP + H H+ LS++ F+SS GG WEKQVRHS+TP++PNG++
Sbjct: 61 K-------------NPNHAHLHHHNFLSAALFTSS--AGGDAWEKQVRHSSTPKKPNGLS 105
Query: 121 VLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLN 180
VLVTGAAGFVGSHCS+ALKKRGDGVLGLDNFNSYYDPSLKRARQKLL K+QVFIVEGDLN
Sbjct: 106 VLVTGAAGFVGSHCSIALKKRGDGVLGLDNFNSYYDPSLKRARQKLLLKNQVFIVEGDLN 165
Query: 181 DAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSI 240
DA LLTKLFDVVPFTH+LHLAAQAGVRYAMQNPQSYV+SNIAGFVNLLEV K+ NPQP+I
Sbjct: 166 DASLLTKLFDVVPFTHILHLAAQAGVRYAMQNPQSYVSSNIAGFVNLLEVAKTANPQPAI 225
Query: 241 VWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIYGLALTGLRFFTV 300
VWASSSSVYGLNTQVPFSE RTDQPASLYAATKKAGEEIAHTYNHIYGL+LTGLRFFTV
Sbjct: 226 VWASSSSVYGLNTQVPFSELDRTDQPASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFTV 285
Query: 301 YGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGA-------T 353
YGPWGRPDMAYFFFTKDILQGK IDVY+TQD ++VARDFTYIDDVVKGC+GA T
Sbjct: 286 YGPWGRPDMAYFFFTKDILQGKPIDVYQTQDKKQVARDFTYIDDVVKGCLGALDTAEKST 345
Query: 354 GSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRNGDVPYTHANV 413
GSGGKK+GPAQLRVYNLGNTSPVPVG+LVSILE LL TKA+KHVI+MPRNGDVPYTHANV
Sbjct: 346 GSGGKKKGPAQLRVYNLGNTSPVPVGKLVSILEGLLRTKARKHVIKMPRNGDVPYTHANV 405
Query: 414 SLAYKDFGYKPTTDLAAGLRKFVKWYVSYYGIQPRVKKENGFSTTTSTIQHPDES 468
+LAY+DFGYKPTTDLA GLRKFVKWYV YYGIQ RVKK++ ++ +HP+ES
Sbjct: 406 TLAYRDFGYKPTTDLATGLRKFVKWYVDYYGIQTRVKKDSDINS-----EHPEES 455
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225433491|ref|XP_002265088.1| PREDICTED: UDP-glucuronate 4-epimerase 6 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 768 bits (1983), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 367/459 (79%), Positives = 403/459 (87%), Gaps = 27/459 (5%)
Query: 1 MASPPDTSKTIKLERYNSYLRRLHVTKMLHSSSKLFFRATILIALVLILFFTLNHPPLSD 60
MASPPDTSKT KLERYNSY+RR++ TK++ +SSKL FRAT+L+ALVLI FFTLN+PPLSD
Sbjct: 1 MASPPDTSKTTKLERYNSYIRRVNSTKLMAASSKLLFRATLLVALVLIFFFTLNYPPLSD 60
Query: 61 NTGESGDNNSNNKNNPRNLFTHQHSLLSSSFFSSSFSTGGAEWEKQVRHSATPRRPNGMT 120
N P ++ THQ+ F SS+F GA WEKQVRHS+TPRRPNG +
Sbjct: 61 N--------------PHHVLTHQN------FLSSAFYGSGASWEKQVRHSSTPRRPNGFS 100
Query: 121 VLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLN 180
VLVTGA GFVG+HCSLALKKRGDGVLGLDNFN YYDPSLKRARQ +L KHQ+FIVEGDLN
Sbjct: 101 VLVTGAGGFVGTHCSLALKKRGDGVLGLDNFNDYYDPSLKRARQAMLSKHQIFIVEGDLN 160
Query: 181 DAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSI 240
DAPLL+KLFD+VPFTH+LHLAAQAGVRYAMQNPQSYV SNIAGFVNLLE+ K+ +PQP+I
Sbjct: 161 DAPLLSKLFDMVPFTHILHLAAQAGVRYAMQNPQSYVRSNIAGFVNLLEIAKAADPQPAI 220
Query: 241 VWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIYGLALTGLRFFTV 300
VWASSSSVYGLNT+ PFSE HRTDQPASLYAATKKAGEEIAHTYNHIYGL+LTGLRFFTV
Sbjct: 221 VWASSSSVYGLNTENPFSELHRTDQPASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFTV 280
Query: 301 YGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGA-------T 353
YGPWGRPDMAYFFFTKDILQGK I +Y+TQDD+EVARDFTYIDDVVKGC+GA T
Sbjct: 281 YGPWGRPDMAYFFFTKDILQGKPITIYQTQDDKEVARDFTYIDDVVKGCLGALDTAEKST 340
Query: 354 GSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRNGDVPYTHANV 413
GSGGKKRGPAQLR+YNLGNTSPVPVGRLV ILE LLN KAKKHVI+MPRNGDVPYTHANV
Sbjct: 341 GSGGKKRGPAQLRIYNLGNTSPVPVGRLVGILEGLLNVKAKKHVIKMPRNGDVPYTHANV 400
Query: 414 SLAYKDFGYKPTTDLAAGLRKFVKWYVSYYGIQPRVKKE 452
SLAY+DFGYKP+TDLA GLR+FVKWYVSYYGIQ RVKKE
Sbjct: 401 SLAYRDFGYKPSTDLATGLRRFVKWYVSYYGIQTRVKKE 439
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357462761|ref|XP_003601662.1| UDP-D-glucuronic acid 4-epimerase [Medicago truncatula] gi|355490710|gb|AES71913.1| UDP-D-glucuronic acid 4-epimerase [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 764 bits (1972), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 367/460 (79%), Positives = 404/460 (87%), Gaps = 27/460 (5%)
Query: 1 MASPPDTSKTIKLERYNSYLRRLHVTKMLHSSSKLFFRATILIALVLILFFTLNHPPLSD 60
MASPPDTSKTIKLERYNSY+R+++ TK+L++SSKL FRAT+LIALVL+ FFT N+PPLSD
Sbjct: 1 MASPPDTSKTIKLERYNSYIRKVNSTKLLNASSKLLFRATLLIALVLVFFFTFNYPPLSD 60
Query: 61 NTGESGDNNSNNKNNPRNLFTHQHSLLSSSFFSSSFSTGGAEWEKQVRHSATPRRPNGMT 120
+T + TH H F +S+F GGA WE+ VRHSA PRRPNG T
Sbjct: 61 STNH-------------HFHTHSH------FLTSAFGGGGA-WERHVRHSAIPRRPNGFT 100
Query: 121 VLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLN 180
VLVTGAAGFVGSHCSLALKKRGDGV+GLDNFNSYYDPSLKRARQ LL +HQ+FIVEGDLN
Sbjct: 101 VLVTGAAGFVGSHCSLALKKRGDGVIGLDNFNSYYDPSLKRARQALLTQHQIFIVEGDLN 160
Query: 181 DAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSI 240
DAPLLTKLFDVVP TH+LHLAAQAGVRYAMQNPQSY+ SNIAGFVNLLEV K+ NPQP+I
Sbjct: 161 DAPLLTKLFDVVPITHILHLAAQAGVRYAMQNPQSYIKSNIAGFVNLLEVSKAANPQPAI 220
Query: 241 VWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIYGLALTGLRFFTV 300
VWASSSSVYGLNT+ PFSE HRTDQPASLYAATKKAGEEIAHTYNHIYGL+LTGLRFFTV
Sbjct: 221 VWASSSSVYGLNTENPFSELHRTDQPASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFTV 280
Query: 301 YGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGA-------T 353
YGPWGRPDMAYFFFTKDIL GKTIDVY+TQ+ +EVARDFTYIDD+VKGCVGA T
Sbjct: 281 YGPWGRPDMAYFFFTKDILHGKTIDVYQTQEGKEVARDFTYIDDIVKGCVGALDTAEKST 340
Query: 354 GSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRNGDVPYTHANV 413
GSGGKK+GPAQLR+YNLGNTSPVPVG+LVSILENLL+TKAKKH+I+MPRNGDVPYTHANV
Sbjct: 341 GSGGKKKGPAQLRIYNLGNTSPVPVGKLVSILENLLSTKAKKHIIKMPRNGDVPYTHANV 400
Query: 414 SLAYKDFGYKPTTDLAAGLRKFVKWYVSYYGIQPRVKKEN 453
++AYKDF YKPTTDLA GLRKFVKWYV YYGIQ R+KKEN
Sbjct: 401 TMAYKDFAYKPTTDLATGLRKFVKWYVRYYGIQSRLKKEN 440
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449442397|ref|XP_004138968.1| PREDICTED: UDP-glucuronate 4-epimerase 6-like [Cucumis sativus] gi|449519212|ref|XP_004166629.1| PREDICTED: UDP-glucuronate 4-epimerase 6-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 763 bits (1970), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 370/476 (77%), Positives = 415/476 (87%), Gaps = 23/476 (4%)
Query: 1 MASPPDTSKTIKLERYNSYLRRLHVTKMLHSSSKLFFRATILIALVLILFFTLNHPPLSD 60
MASPPDTSKT+KLERYNSYLR+++ TK++++SSKL FRAT+L+ALVL+ FTLN+PPLS
Sbjct: 4 MASPPDTSKTLKLERYNSYLRKVNSTKLINASSKLLFRATLLVALVLVFIFTLNYPPLSS 63
Query: 61 NTGESGDNNSNNKNNPRNLFTHQHSLLSSSFFSSSFSTGGAEWEKQVRHSATPRRPNGMT 120
G SG++ L TH++ LSS+F+ S GGA WEKQVRHS+TPRR NGM+
Sbjct: 64 ENGSSGNH----------LHTHRN-FLSSAFYGGS-DQGGAAWEKQVRHSSTPRRLNGMS 111
Query: 121 VLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLN 180
VLVTGAAGFVGSHCS+ALKKRGDGVLGLDNFN+YYDPSLKRARQ LL KHQ+FIVEGDLN
Sbjct: 112 VLVTGAAGFVGSHCSMALKKRGDGVLGLDNFNNYYDPSLKRARQSLLLKHQIFIVEGDLN 171
Query: 181 DAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSI 240
DA LL+KLFDVVPFTH+LHLAAQAGVRYAMQNPQSY+ SNIAGFVNLLEV K+ +PQP+I
Sbjct: 172 DAALLSKLFDVVPFTHILHLAAQAGVRYAMQNPQSYINSNIAGFVNLLEVAKTADPQPAI 231
Query: 241 VWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIYGLALTGLRFFTV 300
VWASSSSVYGLNT+ PFSE HRTDQPASLYAATKKAGEEIAHTYNHIYGL+LTGLRFFTV
Sbjct: 232 VWASSSSVYGLNTENPFSELHRTDQPASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFTV 291
Query: 301 YGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGA-------T 353
YGPWGRPDMAYFFFTKDILQGK ID+YKT D +EVARDFTYIDD+VKGC+GA T
Sbjct: 292 YGPWGRPDMAYFFFTKDILQGKQIDIYKTHDAKEVARDFTYIDDIVKGCLGALDTAEKST 351
Query: 354 GSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRNGDVPYTHANV 413
GSGGKK+GPAQLR+YNLGNTSPVPVG+LVS+LENLLNTKAKKH+I MPRNGDVP+THANV
Sbjct: 352 GSGGKKKGPAQLRIYNLGNTSPVPVGKLVSVLENLLNTKAKKHIITMPRNGDVPFTHANV 411
Query: 414 SLAYKDFGYKPTTDLAAGLRKFVKWYVSYYGIQPRVKKENGFSTTTSTIQHPDESA 469
SLA KDFGYKPTTDL GLRKFVKWYV YYGIQ RV+KE+ + S P+ESA
Sbjct: 412 SLALKDFGYKPTTDLPTGLRKFVKWYVGYYGIQSRVRKESEKNNNHS----PEESA 463
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|388523005|gb|AFK49564.1| unknown [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 762 bits (1968), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 366/460 (79%), Positives = 403/460 (87%), Gaps = 27/460 (5%)
Query: 1 MASPPDTSKTIKLERYNSYLRRLHVTKMLHSSSKLFFRATILIALVLILFFTLNHPPLSD 60
MASPPDTSKTIKLERYNSY+R+++ TK+L++SSKL FRAT+LIALVL+ FFT N+PPLSD
Sbjct: 1 MASPPDTSKTIKLERYNSYIRKVNSTKLLNASSKLLFRATLLIALVLVFFFTFNYPPLSD 60
Query: 61 NTGESGDNNSNNKNNPRNLFTHQHSLLSSSFFSSSFSTGGAEWEKQVRHSATPRRPNGMT 120
+T + TH H F +S+F GGA WE+ VRHSA PRRPNG T
Sbjct: 61 STNH-------------HFHTHSH------FLTSAFGGGGA-WERHVRHSAIPRRPNGFT 100
Query: 121 VLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLN 180
VLVTGAAGFVGSHCSLALKKRGDGV+GLDNFNSYYDPSLKRARQ LL +HQ+FIVEGDLN
Sbjct: 101 VLVTGAAGFVGSHCSLALKKRGDGVIGLDNFNSYYDPSLKRARQALLTQHQIFIVEGDLN 160
Query: 181 DAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSI 240
DAPLLTKLFDVVP TH+LHLAAQAGVRYAMQNPQSY+ SNIAGFVNLLEV K+ NPQP+I
Sbjct: 161 DAPLLTKLFDVVPITHILHLAAQAGVRYAMQNPQSYIKSNIAGFVNLLEVSKAANPQPAI 220
Query: 241 VWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIYGLALTGLRFFTV 300
VWASSSSVYGLNT+ PFSE HRTDQPASLYAATKKAGEEIAHTYNHIYGL+LTGLRFFT
Sbjct: 221 VWASSSSVYGLNTENPFSELHRTDQPASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFTA 280
Query: 301 YGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGA-------T 353
YGPWGRPDMAYFFFTKDIL GKTIDVY+TQ+ +EVARDFTYIDD+VKGCVGA T
Sbjct: 281 YGPWGRPDMAYFFFTKDILHGKTIDVYQTQEGKEVARDFTYIDDIVKGCVGALDTAEKST 340
Query: 354 GSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRNGDVPYTHANV 413
GSGGKK+GPAQLR+YNLGNTSPVPVG+LVSILENLL+TKAKKH+I+MPRNGDVPYTHANV
Sbjct: 341 GSGGKKKGPAQLRIYNLGNTSPVPVGKLVSILENLLSTKAKKHIIKMPRNGDVPYTHANV 400
Query: 414 SLAYKDFGYKPTTDLAAGLRKFVKWYVSYYGIQPRVKKEN 453
++AYKDF YKPTTDLA GLRKFVKWYV YYGIQ R+KKEN
Sbjct: 401 TMAYKDFAYKPTTDLATGLRKFVKWYVRYYGIQSRLKKEN 440
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147854365|emb|CAN83418.1| hypothetical protein VITISV_041351 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 758 bits (1958), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 363/456 (79%), Positives = 400/456 (87%), Gaps = 27/456 (5%)
Query: 1 MASPPDTSKTIKLERYNSYLRRLHVTKMLHSSSKLFFRATILIALVLILFFTLNHPPLSD 60
MASPPDTSKT KLERYNSY+RR++ TK++ +SSKL FRAT+L+ALVLI FFTLN+PPLSD
Sbjct: 1 MASPPDTSKTTKLERYNSYIRRVNSTKLMAASSKLLFRATLLVALVLIFFFTLNYPPLSD 60
Query: 61 NTGESGDNNSNNKNNPRNLFTHQHSLLSSSFFSSSFSTGGAEWEKQVRHSATPRRPNGMT 120
N P ++ THQ+ F SS+F GA WEKQVRHS+TPRRPNG +
Sbjct: 61 N--------------PHHVLTHQN------FLSSAFYGSGASWEKQVRHSSTPRRPNGFS 100
Query: 121 VLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLN 180
VLVTGA GFVG+HCSLALKKRGDGVLGLDNFN YYDPSLKRARQ +L KHQ+FIVEGDLN
Sbjct: 101 VLVTGAGGFVGTHCSLALKKRGDGVLGLDNFNDYYDPSLKRARQAMLSKHQIFIVEGDLN 160
Query: 181 DAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSI 240
DAPLL+KLFD+VPFTH+LHLAAQAGVRYAMQNPQSYV SNIAGFVNLLE+ K+ +PQP+I
Sbjct: 161 DAPLLSKLFDMVPFTHILHLAAQAGVRYAMQNPQSYVRSNIAGFVNLLEIAKAADPQPAI 220
Query: 241 VWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIYGLALTGLRFFTV 300
VWASSSSVYGLNT+ PFSE HRTDQPASLYAATKKAGEEIAHTYNHIYGL+LTGLRFFTV
Sbjct: 221 VWASSSSVYGLNTENPFSELHRTDQPASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFTV 280
Query: 301 YGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGA-------T 353
YGPWGRPDMAYFFFTKDILQGK I +Y+TQDD+EVARDFTYIDDVVKGC+GA T
Sbjct: 281 YGPWGRPDMAYFFFTKDILQGKPITIYQTQDDKEVARDFTYIDDVVKGCLGALDTAEKST 340
Query: 354 GSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRNGDVPYTHANV 413
GSGGKKRGPAQLR+YNLGNTSPVPVGRLV ILE LLN KAKKHVI+MPRNGDVPYTHANV
Sbjct: 341 GSGGKKRGPAQLRIYNLGNTSPVPVGRLVGILEGLLNVKAKKHVIKMPRNGDVPYTHANV 400
Query: 414 SLAYKDFGYKPTTDLAAGLRKFVKWYVSYYGIQPRV 449
SLAY+DFGYKP+TDLA GLR+FVKWYVSYYGIQ R+
Sbjct: 401 SLAYRDFGYKPSTDLATGLRRFVKWYVSYYGIQTRL 436
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|84468266|dbj|BAE71216.1| putative NAD dependent epimerase [Trifolium pratense] | Back alignment and taxonomy information |
|---|
Score = 753 bits (1945), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 370/476 (77%), Positives = 406/476 (85%), Gaps = 32/476 (6%)
Query: 1 MASPPDTSKTIKLERYNSYLRRLHVTKMLHSSSKLFFRATILIALVLILFFTLNHPPLSD 60
MASPPDTSKTIKLERYNSY+R+++ TK+L++SSKL FRAT+LIALVL+ FFT N+PPLSD
Sbjct: 1 MASPPDTSKTIKLERYNSYIRKVNSTKLLNASSKLLFRATLLIALVLVFFFTFNYPPLSD 60
Query: 61 NTGESGDNNSNNKNNPRNLFTHQHSLLSSSFFSSSFSTGGAEWEKQVRHSATPRRPNGMT 120
T H S F +S+F GGA WE+QVRHSATPRRPNG T
Sbjct: 61 TT-------------------SHHFHTHSHFLTSAFGGGGA-WERQVRHSATPRRPNGFT 100
Query: 121 VLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLN 180
VLVTGAAGFVGSHCSLALKKRGDGV+GLDNFN+YYDPSLKRARQ LL +HQ+FIVEGDLN
Sbjct: 101 VLVTGAAGFVGSHCSLALKKRGDGVIGLDNFNNYYDPSLKRARQDLLSQHQIFIVEGDLN 160
Query: 181 DAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSI 240
D PLL+KLFDVVP TH+LHLAAQAGVRYAMQNPQSY+ SNIAGFVNLLEV K+ NPQPSI
Sbjct: 161 DGPLLSKLFDVVPITHILHLAAQAGVRYAMQNPQSYIKSNIAGFVNLLEVSKTANPQPSI 220
Query: 241 VWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIYGLALTGLRFFTV 300
VWASSSSVYGLNT+ PFSE RTDQPASLYAATKKAGEEIAHTYNHIYGL+LTGLRFFTV
Sbjct: 221 VWASSSSVYGLNTENPFSELDRTDQPASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFTV 280
Query: 301 YGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGA-------T 353
YGPWGRPDMAYFFFTKDIL GKTIDVY+TQD +EVARDFTYIDD+VKGCVGA T
Sbjct: 281 YGPWGRPDMAYFFFTKDILHGKTIDVYQTQDGKEVARDFTYIDDIVKGCVGALDTAEKST 340
Query: 354 GSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRNGDVPYTHANV 413
GSGGKK+GPAQLR+YNLGNTSPVPVG+LV+ILENLL TKAKKHVI+MPRNGDVPYTHANV
Sbjct: 341 GSGGKKKGPAQLRIYNLGNTSPVPVGKLVTILENLLTTKAKKHVIKMPRNGDVPYTHANV 400
Query: 414 SLAYKDFGYKPTTDLAAGLRKFVKWYVSYYGIQPRVKKENGFSTTTSTIQHPDESA 469
+LAY+DFGYKP TDL+ GLRKFVKWYV YYGIQPR+KKEN + PD SA
Sbjct: 401 TLAYRDFGYKPVTDLSTGLRKFVKWYVRYYGIQPRLKKENRIDN-----EQPDGSA 451
|
Source: Trifolium pratense Species: Trifolium pratense Genus: Trifolium Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|283488497|gb|ADB24770.1| UDP-D-glucuronic acid 4-epimerase [Gossypium hirsutum] | Back alignment and taxonomy information |
|---|
Score = 749 bits (1934), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 367/473 (77%), Positives = 406/473 (85%), Gaps = 28/473 (5%)
Query: 4 PPDTSKTIKLERYNSYLRRLHVTKMLHSSSKLFFRATILIALVLILFFTLNHPPLSDNTG 63
P DTSK +KLERYNSY+R++H TK+L++SSK FR T+LIALVLILFFT+N+PPLSDNT
Sbjct: 2 PTDTSKPMKLERYNSYIRKVHSTKLLNASSKFLFRVTLLIALVLILFFTINYPPLSDNTH 61
Query: 64 ESGDNNSNNKNNPRNLFTHQHSLLSSSFFSSSFSTGGAEWEKQVRHSATPRRPNGMTVLV 123
+ ++ +HS LS+S FS S GGA WEKQVRHS+TPRR NG +VLV
Sbjct: 62 SAPHHHH------------RHSFLSTSLFSGSSLVGGAAWEKQVRHSSTPRRVNGFSVLV 109
Query: 124 TGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAP 183
TGAAGF+GSHCSLALKKRGDGVLGLDNFN YYDPSLKRARQ LL KHQ+FIVEGDLND P
Sbjct: 110 TGAAGFIGSHCSLALKKRGDGVLGLDNFNDYYDPSLKRARQNLLSKHQIFIVEGDLNDGP 169
Query: 184 LLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWA 243
LLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYV SNIAGFVNLLEV K+VNPQP+IVWA
Sbjct: 170 LLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVKSNIAGFVNLLEVAKAVNPQPAIVWA 229
Query: 244 SSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIYGLALTGLRFFTVYGP 303
SSSSVYGLNT+ PFSE RTD+PASLYAATKKAGEEIAHTYNHIYGL+LTGLRFFTVYGP
Sbjct: 230 SSSSVYGLNTENPFSERDRTDRPASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGP 289
Query: 304 WGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGA-------TGSG 356
WGRPDMAYFFFTKDILQGK ID+Y+TQD + VARDFTYIDDVVKGC+GA TGSG
Sbjct: 290 WGRPDMAYFFFTKDILQGKPIDIYRTQDQKAVARDFTYIDDVVKGCLGALDTAEKSTGSG 349
Query: 357 GKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRNGDVPYTHANVSLA 416
GKK+GPAQLRVYNLGNTSPVPVGRLVSILE LLNTKAKKHV+ +PRNGDVPYTHANV+LA
Sbjct: 350 GKKKGPAQLRVYNLGNTSPVPVGRLVSILEGLLNTKAKKHVVTLPRNGDVPYTHANVTLA 409
Query: 417 YKDFGYKPTTDLAAGLRKFVKWYVSYYGIQPRVKKENGFSTTTSTIQHPDESA 469
YKDFGYKPTTDL++GLRKFVKWYV+Y+GI+ + KE QH DES+
Sbjct: 410 YKDFGYKPTTDLSSGLRKFVKWYVNYFGIESKHSKET---------QHFDESS 453
|
Source: Gossypium hirsutum Species: Gossypium hirsutum Genus: Gossypium Family: Malvaceae Order: Malvales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297831166|ref|XP_002883465.1| hypothetical protein ARALYDRAFT_898926 [Arabidopsis lyrata subsp. lyrata] gi|297329305|gb|EFH59724.1| hypothetical protein ARALYDRAFT_898926 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 732 bits (1890), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 362/464 (78%), Positives = 407/464 (87%), Gaps = 23/464 (4%)
Query: 1 MASPPDTSKTIKLERYNSYLRRLHVTKMLHSSSKLFFRATILIALVLILFFTLNHPPLSD 60
+++ DTSKT+KLERYNSYLR++H TK+L++SSK+ FRAT+L+ALVL+L F +N+PPLSD
Sbjct: 3 LSATADTSKTVKLERYNSYLRKIHSTKVLNASSKVLFRATLLVALVLVLLFAINYPPLSD 62
Query: 61 NTGESGDNNSNNKNNPRNLFTHQHSLLSSSFFSSSFST----GGAEWEKQVRHSATPRRP 116
+ + + H+ S LS+ FSSS S+ GGA WEK+VR S+T +RP
Sbjct: 63 SRAAAAHH------------LHRRSFLSTGLFSSSSSSSSSIGGAAWEKRVRQSSTAKRP 110
Query: 117 NGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVE 176
+G++VLVTGAAGFVGSHCSLAL+KRGDGVLG DNFN YYDPSLKRARQ+LL+K QVFIVE
Sbjct: 111 HGLSVLVTGAAGFVGSHCSLALRKRGDGVLGFDNFNDYYDPSLKRARQELLEKQQVFIVE 170
Query: 177 GDLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNP 236
GDLND PLL KLFDVVPFTH+LHLAAQAGVRYAM+NPQSY+ASNIAGFVNLLEV K+ NP
Sbjct: 171 GDLNDGPLLRKLFDVVPFTHILHLAAQAGVRYAMKNPQSYIASNIAGFVNLLEVAKAANP 230
Query: 237 QPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIYGLALTGLR 296
QP+IVWASSSSVYGLNT+ PFSE HRTDQPASLYAATKKAGEEIAHTYNHIYGL+LTGLR
Sbjct: 231 QPAIVWASSSSVYGLNTENPFSEEHRTDQPASLYAATKKAGEEIAHTYNHIYGLSLTGLR 290
Query: 297 FFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGA---- 352
FFTVYGPWGRPDMAYFFFTKDIL GK+ID+Y+TQD++EVARDFTYIDD+VKGCVGA
Sbjct: 291 FFTVYGPWGRPDMAYFFFTKDILHGKSIDIYRTQDNQEVARDFTYIDDIVKGCVGALDTA 350
Query: 353 ---TGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRNGDVPYT 409
TGSGGKKRG AQLRVYNLGNTSPVPVGRLVSILE LL TKAKKH+I+MPRNGDVPYT
Sbjct: 351 EKSTGSGGKKRGQAQLRVYNLGNTSPVPVGRLVSILEGLLGTKAKKHLIKMPRNGDVPYT 410
Query: 410 HANVSLAYKDFGYKPTTDLAAGLRKFVKWYVSYYGIQPRVKKEN 453
HANVSLAYKDFGYKPTTDLAAGLRKFVKWYV YYGIQPRVKKEN
Sbjct: 411 HANVSLAYKDFGYKPTTDLAAGLRKFVKWYVGYYGIQPRVKKEN 454
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 469 | ||||||
| TAIR|locus:2076066 | 460 | GAE6 "UDP-D-glucuronate 4-epim | 0.944 | 0.963 | 0.771 | 1.7e-192 | |
| TAIR|locus:2050921 | 437 | GAE4 "UDP-D-glucuronate 4-epim | 0.735 | 0.789 | 0.754 | 4.1e-149 | |
| TAIR|locus:2025472 | 434 | GAE2 "UDP-D-glucuronate 4-epim | 0.735 | 0.794 | 0.758 | 6.6e-145 | |
| TAIR|locus:2126846 | 430 | GAE3 "UDP-D-glucuronate 4-epim | 0.735 | 0.802 | 0.752 | 3.6e-144 | |
| TAIR|locus:2139134 | 436 | GAE5 "UDP-D-glucuronate 4-epim | 0.735 | 0.791 | 0.752 | 7.5e-144 | |
| TAIR|locus:2118711 | 429 | GAE1 "UDP-D-glucuronate 4-epim | 0.750 | 0.820 | 0.724 | 1.6e-141 | |
| TIGR_CMR|GSU_2241 | 336 | GSU_2241 "capsular polysacchar | 0.684 | 0.955 | 0.483 | 6.2e-78 | |
| TIGR_CMR|CBU_0844 | 339 | CBU_0844 "capsular polysacchar | 0.682 | 0.943 | 0.476 | 2.7e-75 | |
| UNIPROTKB|Q8E8H8 | 335 | wcvA "UDP-glucuronate 4-epimer | 0.682 | 0.955 | 0.476 | 3.2e-72 | |
| TIGR_CMR|SO_4686 | 335 | SO_4686 "NAD dependent epimera | 0.682 | 0.955 | 0.476 | 3.2e-72 |
| TAIR|locus:2076066 GAE6 "UDP-D-glucuronate 4-epimerase 6" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1865 (661.6 bits), Expect = 1.7e-192, P = 1.7e-192
Identities = 354/459 (77%), Positives = 396/459 (86%)
Query: 1 MASPPDTSKTIKLERYNSYLRRLHVTKMLHSSSKLFFRATILIALVLILFFTLNHPPLSD 60
+++ DTSKT+KLERYNSYLR++H TK+L++SSK+ FRAT+L+ALVL+L F +N+PPLSD
Sbjct: 3 LSATADTSKTVKLERYNSYLRKIHSTKVLNASSKVLFRATLLVALVLVLIFAINYPPLSD 62
Query: 61 NTGESGDXXXXXXXXXXXLFTHQHXXXXXXXXXXXXXTGGAEWEKQVRHSATPRRPNGMT 120
+ + LF+ GGA WEK+VR S+T +RP+G++
Sbjct: 63 SRAAAAHHLHRRSFLSTGLFS---------SSSSSSSIGGAAWEKRVRQSSTAKRPHGLS 113
Query: 121 VLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLN 180
VLVTGAAGFVGSHCSLAL+KRGDGVLG DNFN YYDPSLKRARQ+LL+K QVFIVEGDLN
Sbjct: 114 VLVTGAAGFVGSHCSLALRKRGDGVLGFDNFNDYYDPSLKRARQELLEKQQVFIVEGDLN 173
Query: 181 DAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSI 240
D PLL KLFDVVPFTH+LHLAAQAGVRYAM+NPQSY+ASNIAGFVNLLEV K+ NPQP+I
Sbjct: 174 DGPLLRKLFDVVPFTHILHLAAQAGVRYAMKNPQSYIASNIAGFVNLLEVAKAANPQPAI 233
Query: 241 VWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIYGLALTGLRFFTV 300
VWASSSSVYGLNT+ PFSE HRTDQPASLYAATKKAGEEIAHTYNHIYGL+LTGLRFFTV
Sbjct: 234 VWASSSSVYGLNTENPFSEEHRTDQPASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFTV 293
Query: 301 YGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGA-------T 353
YGPWGRPDMAYFFFTKDIL GK+ID+Y+TQD++EVARDFTYIDD+VKGCVGA T
Sbjct: 294 YGPWGRPDMAYFFFTKDILHGKSIDIYRTQDNQEVARDFTYIDDIVKGCVGALDTAEKST 353
Query: 354 GSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRNGDVPYTHANV 413
GSGGKKRG AQLRVYNLGNTSPVPVGRLVSILE LL TKAKKH+I+MPRNGDVPYTHANV
Sbjct: 354 GSGGKKRGQAQLRVYNLGNTSPVPVGRLVSILEGLLGTKAKKHLIKMPRNGDVPYTHANV 413
Query: 414 SLAYKDFGYKPTTDLAAGLRKFVKWYVSYYGIQPRVKKE 452
SLAYKDFGYKPTTDLAAGLRKFVKWYV YYGIQPRVKKE
Sbjct: 414 SLAYKDFGYKPTTDLAAGLRKFVKWYVGYYGIQPRVKKE 452
|
|
| TAIR|locus:2050921 GAE4 "UDP-D-glucuronate 4-epimerase 4" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1418 (504.2 bits), Expect = 4.1e-149, Sum P(2) = 4.1e-149
Identities = 267/354 (75%), Positives = 306/354 (86%)
Query: 99 GGAEWEKQVRHSATPRRP--NGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYD 156
GG WEK++R SA R NG+TVLVTGAAGFVG+H S ALK+RGDGV+GLDNFN YYD
Sbjct: 75 GGPAWEKRLRSSARIRTSTNNGITVLVTGAAGFVGTHVSAALKRRGDGVIGLDNFNDYYD 134
Query: 157 PSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSY 216
PSLKRAR+ LL++ +FIVEGD+ND LL KLF +V FTHV+HLAAQAGVRYAM+NP SY
Sbjct: 135 PSLKRARRALLERSGIFIVEGDINDVELLRKLFKIVSFTHVMHLAAQAGVRYAMENPSSY 194
Query: 217 VASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKA 276
V SNIAGFVNLLE+CKSVNPQP+IVWASSSSVYGLNT+VPFSE +TDQPASLYAATKKA
Sbjct: 195 VHSNIAGFVNLLEICKSVNPQPAIVWASSSSVYGLNTKVPFSEKDKTDQPASLYAATKKA 254
Query: 277 GEEIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVA 336
GEEIAHTYNHIYGL+LTGLRFFTVYGPWGRPDMAYFFFTKDIL+GK+I ++++ + VA
Sbjct: 255 GEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTKDILKGKSISIFESANHGTVA 314
Query: 337 RDFTYIDDVVKGCVGA-------TGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLL 389
RDFTYIDD+VKGC+ A TGSGGKKRGPAQLRV+NLGNTSPVPV LV ILE L
Sbjct: 315 RDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGPAQLRVFNLGNTSPVPVSDLVRILERQL 374
Query: 390 NTKAKKHVIRMPRNGDVPYTHANVSLAYKDFGYKPTTDLAAGLRKFVKWYVSYY 443
KAKK++I+MPRNGDVP+THAN+SLA ++ GYKPTTDL GL+KFV+WY+SYY
Sbjct: 375 KVKAKKNLIKMPRNGDVPFTHANISLAQRELGYKPTTDLQTGLKKFVRWYLSYY 428
|
|
| TAIR|locus:2025472 GAE2 "UDP-D-glucuronate 4-epimerase 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1416 (503.5 bits), Expect = 6.6e-145, P = 6.6e-145
Identities = 267/352 (75%), Positives = 305/352 (86%)
Query: 99 GGAEWEKQVRHSATPRRPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPS 158
GG WEK+VR SA R NG++VLVTGAAGFVG+H S ALK+RGDGVLGLDNFN YYD S
Sbjct: 72 GGPAWEKRVRSSARVRTRNGVSVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDTS 131
Query: 159 LKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVA 218
LKR+RQ LL++ VFIVEGD+ND LL KLF+VVPFTHV+HLAAQAGVRYAM+NP SYV
Sbjct: 132 LKRSRQALLERSGVFIVEGDINDLSLLKKLFEVVPFTHVMHLAAQAGVRYAMENPGSYVH 191
Query: 219 SNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGE 278
SNIAGFVNLLEVCKS NPQP+IVWASSSSVYGLNT+VPFSE RTDQPASLYAATKKAGE
Sbjct: 192 SNIAGFVNLLEVCKSANPQPAIVWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKKAGE 251
Query: 279 EIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARD 338
EIAHTYNHIYGL+LTGLRFFTVYGPWGRPDMAYFFFT+DIL+GK I +++ + VARD
Sbjct: 252 EIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILKGKAISIFEGANHGTVARD 311
Query: 339 FTYIDDVVKGCVGA-------TGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNT 391
FTYIDD+VKGC+GA TGSGGKKRG AQLRV+NLGNTSPVPV LVSILE LL
Sbjct: 312 FTYIDDIVKGCLGALDTAEKSTGSGGKKRGAAQLRVFNLGNTSPVPVTDLVSILERLLKV 371
Query: 392 KAKKHVIRMPRNGDVPYTHANVSLAYKDFGYKPTTDLAAGLRKFVKWYVSYY 443
KAK++++++PRNGDVP+THAN+S A ++FGYKP+TDL GL+KFV+WY+ YY
Sbjct: 372 KAKRNMMKLPRNGDVPFTHANISSAQREFGYKPSTDLQTGLKKFVRWYLGYY 423
|
|
| TAIR|locus:2126846 GAE3 "UDP-D-glucuronate 4-epimerase 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1409 (501.1 bits), Expect = 3.6e-144, P = 3.6e-144
Identities = 265/352 (75%), Positives = 302/352 (85%)
Query: 99 GGAEWEKQVRHSATPRRPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPS 158
GG WEK+VR SA R G +VLVTGAAGFVG+H S ALK+RGDGVLGLDNFN YYDPS
Sbjct: 71 GGPAWEKRVRSSARLRTRRGFSVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPS 130
Query: 159 LKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVA 218
LKRARQ LL++ VF+VEGD+NDA LL KLF+VVPFTHV+HLAAQAGVRYAM+NP SYV
Sbjct: 131 LKRARQALLERSGVFVVEGDINDAALLKKLFEVVPFTHVMHLAAQAGVRYAMENPSSYVH 190
Query: 219 SNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGE 278
SNIAGFVNLLEVCKS NPQP+IVWASSSSVYGLNT+VPFSE RTDQPASLYAATKKAGE
Sbjct: 191 SNIAGFVNLLEVCKSANPQPAIVWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKKAGE 250
Query: 279 EIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARD 338
EIAHTYNHIYGL+LTGLRFFTVYGPWGRPDMAYFFFT+DIL+GK I +++ + VARD
Sbjct: 251 EIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILKGKAISIFEGVNHGTVARD 310
Query: 339 FTYIDDVVKGCVGA-------TGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNT 391
FTYIDD+VKGC+GA TGSGGKKRG AQLRV+NLGNTSPVPV LV+ILE LL
Sbjct: 311 FTYIDDIVKGCLGALDTAEKSTGSGGKKRGAAQLRVFNLGNTSPVPVTDLVTILERLLKV 370
Query: 392 KAKKHVIRMPRNGDVPYTHANVSLAYKDFGYKPTTDLAAGLRKFVKWYVSYY 443
KAK++++++PRNGDV +THAN+S A ++ GYKPTTDL GL+KF +WY+ YY
Sbjct: 371 KAKRNIMKLPRNGDVQFTHANISSAQRELGYKPTTDLQTGLKKFARWYLGYY 422
|
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| TAIR|locus:2139134 GAE5 "UDP-D-glucuronate 4-epimerase 5" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1406 (500.0 bits), Expect = 7.5e-144, P = 7.5e-144
Identities = 265/352 (75%), Positives = 301/352 (85%)
Query: 99 GGAEWEKQVRHSATPRRPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPS 158
GG+ WEKQVR SA PR G+TVLVTGA+GFVG+H S+AL++RGDGVLGLDNFN YYDP
Sbjct: 76 GGSHWEKQVRKSARPRSHGGLTVLVTGASGFVGTHVSIALRRRGDGVLGLDNFNRYYDPK 135
Query: 159 LKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVA 218
LKRARQ LL++ VF+VEGD+NDA LL KLFDVV FTHV+HLAAQAGVRYAMQNP SYV
Sbjct: 136 LKRARQGLLERSGVFVVEGDINDAVLLRKLFDVVLFTHVMHLAAQAGVRYAMQNPGSYVN 195
Query: 219 SNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGE 278
SNIAGFVNLLEV KS NPQP+IVWASSSSVYGLN++VPFSE RTDQPASLYAATKKAGE
Sbjct: 196 SNIAGFVNLLEVSKSANPQPAIVWASSSSVYGLNSKVPFSEKDRTDQPASLYAATKKAGE 255
Query: 279 EIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARD 338
IAHTYNHIYGL+LTGLRFFTVYGPWGRPDMAYFFFTKDIL+GKTI V+++ D VARD
Sbjct: 256 GIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTKDILKGKTITVFESPDKGSVARD 315
Query: 339 FTYIDDVVKGCVGA-------TGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNT 391
FTYIDD+VKGC+GA TGSGGKK+GPA R+YNLGNTSPVPV +LV+ILE LL
Sbjct: 316 FTYIDDIVKGCLGALDTAEKSTGSGGKKKGPAMFRIYNLGNTSPVPVTKLVTILEKLLKM 375
Query: 392 KAKKHVIRMPRNGDVPYTHANVSLAYKDFGYKPTTDLAAGLRKFVKWYVSYY 443
KAKK ++ +PRNGDV +THAN++LA + GYKP DL GL+KFVKWY+ +Y
Sbjct: 376 KAKKKIMPLPRNGDVEFTHANITLAQAELGYKPAVDLETGLKKFVKWYMGFY 427
|
|
| TAIR|locus:2118711 GAE1 "UDP-D-glucuronate 4-epimerase 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1384 (492.3 bits), Expect = 1.6e-141, P = 1.6e-141
Identities = 260/359 (72%), Positives = 300/359 (83%)
Query: 99 GGAEWEKQVRHSATPRRPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPS 158
GG +WEKQVR SA R G++VLVTGA GFVGSH SLAL+KRGDGV+GLDNFN+YYDPS
Sbjct: 68 GGIQWEKQVRTSAQIHRSGGISVLVTGATGFVGSHVSLALRKRGDGVVGLDNFNNYYDPS 127
Query: 159 LKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVA 218
LKRAR+ LL +F+VEGDLNDA LL KLFDVV FTHV+HLAAQAGVRYA++NPQSYV
Sbjct: 128 LKRARRSLLSSRGIFVVEGDLNDAKLLAKLFDVVAFTHVMHLAAQAGVRYALENPQSYVH 187
Query: 219 SNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGE 278
SNIAG VNLLE+CK+ NPQP+IVWASSSSVYGLN +VPFSES RTDQPASLYAATKKAGE
Sbjct: 188 SNIAGLVNLLEICKAANPQPAIVWASSSSVYGLNEKVPFSESDRTDQPASLYAATKKAGE 247
Query: 279 EIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARD 338
EI HTYNHIYGLA+TGLRFFTVYGPWGRPDMAYF FT++ILQGK I +Y+ ++ ++ARD
Sbjct: 248 EITHTYNHIYGLAITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITIYRGKNRVDLARD 307
Query: 339 FTYIDDVVKGCVGA-------TGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNT 391
FTYIDD+VKGC+G+ TGSGGKKRG A R++NLGNTSPV V LV ILE L
Sbjct: 308 FTYIDDIVKGCLGSLDSSGKSTGSGGKKRGAAPYRIFNLGNTSPVTVPILVDILEKHLKV 367
Query: 392 KAKKHVIRMPRNGDVPYTHANVSLAYKDFGYKPTTDLAAGLRKFVKWYVSYYGIQPRVK 450
KAK++ + MP NGDVP+THAN+S A +FGYKPTTDL GL+KFV+WY+SYYG + K
Sbjct: 368 KAKRNFVEMPGNGDVPFTHANISSARNEFGYKPTTDLETGLKKFVRWYLSYYGYNTKAK 426
|
|
| TIGR_CMR|GSU_2241 GSU_2241 "capsular polysaccharide biosynthesis protein I" [Geobacter sulfurreducens PCA (taxid:243231)] | Back alignment and assigned GO terms |
|---|
Score = 784 (281.0 bits), Expect = 6.2e-78, P = 6.2e-78
Identities = 164/339 (48%), Positives = 217/339 (64%)
Query: 120 TVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVF-IVEGD 178
++LVTGAAGF+G H + L RGD V+GLDN N YYD +LK R + L+ + F V
Sbjct: 3 SILVTGAAGFIGFHLTKRLLDRGDRVVGLDNLNDYYDVNLKLDRLRQLEGREGFSFVRTS 62
Query: 179 LNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQP 238
L D P L LF F V++LAAQAGVRY++ NP +YV SN+ GF+N+LE C+ +
Sbjct: 63 LADRPALEDLFAGQRFDVVVNLAAQAGVRYSITNPHAYVDSNLVGFINILEGCRHHGVK- 121
Query: 239 SIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIYGLALTGLRFF 298
+V+ASSSSVYG NT +PFS H D P SLYAATKKA E +AHTY+ +YGL TGLRFF
Sbjct: 122 HLVYASSSSVYGANTAMPFSIHHNVDHPVSLYAATKKANELMAHTYSSLYGLPTTGLRFF 181
Query: 299 TVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGATGS--- 355
TVYGPWGRPDMA F FTK IL+G+ IDVY ++ RDFTY+DD+V+G
Sbjct: 182 TVYGPWGRPDMALFLFTKAILEGRPIDVYNFG---KMQRDFTYVDDIVEGVTRVMDRTPE 238
Query: 356 -----GGKKRGP----AQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRNGDV 406
G + P A R+YN+GN +PV + + +E L A+K+++ + + GDV
Sbjct: 239 PNPAWSGARPDPGTSYAPYRIYNIGNNNPVELLAFIEAIEQNLGITAQKNLLPL-QAGDV 297
Query: 407 PYTHANVSLAYKDFGYKPTTDLAAGLRKFVKWYVSYYGI 445
P T+A+V D G+KP T + G+ +FV+WY YYG+
Sbjct: 298 PATYADVDDLMNDVGFKPATPIGEGIERFVEWYRGYYGV 336
|
|
| TIGR_CMR|CBU_0844 CBU_0844 "capsular polysaccharide biosynthesis protein I" [Coxiella burnetii RSA 493 (taxid:227377)] | Back alignment and assigned GO terms |
|---|
Score = 759 (272.2 bits), Expect = 2.7e-75, P = 2.7e-75
Identities = 161/338 (47%), Positives = 219/338 (64%)
Query: 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEG- 177
M LVTG AGF+G H + L RGD +LGLDN N YYD +LK AR L++ F
Sbjct: 6 MRTLVTGCAGFIGFHLTKRLLARGDHILGLDNLNDYYDVNLKEARLAQLKEFPHFSFHKL 65
Query: 178 DLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQ 237
DL D +T LF F V+HLAAQAGVRY++ NP +YV SN+ GF ++LE C+ + +
Sbjct: 66 DLADRQGMTDLFQKHLFDTVVHLAAQAGVRYSLTNPYAYVDSNLVGFAHILEGCRHQSVK 125
Query: 238 PSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIYGLALTGLRF 297
+V+ASSSSVYG N + PFSES D P +LYAA+KKA E +AH+Y H++ L TGLRF
Sbjct: 126 -HLVFASSSSVYGANEKYPFSESDNVDHPIALYAASKKANELMAHSYAHLFQLPCTGLRF 184
Query: 298 FTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGA----- 352
FTVYGPWGRPDMA F FT+++L K IDVY + +++RDFTYIDD+V G +
Sbjct: 185 FTVYGPWGRPDMALFKFTRNLLADKPIDVY---NHGKMSRDFTYIDDIVDGILLTLDHPP 241
Query: 353 ---TGSGGKKRGPAQ----LRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRNGD 405
+ + PA+ R+YN+G+ +P+ + ++ILE LN KA K+ + + + GD
Sbjct: 242 EPNSAYSANQPNPAKSNAPYRIYNIGSNNPILLTNFIAILEKTLNKKAIKNFLPL-QPGD 300
Query: 406 VPYTHANVSLAYKDFGYKPTTDLAAGLRKFVKWYVSYY 443
VP T+A+VS KDF Y+P T L G++ FV+WY+ Y+
Sbjct: 301 VPETYADVSQLEKDFQYRPRTPLQKGVKNFVEWYLQYF 338
|
|
| UNIPROTKB|Q8E8H8 wcvA "UDP-glucuronate 4-epimerase WcvA" [Shewanella oneidensis MR-1 (taxid:211586)] | Back alignment and assigned GO terms |
|---|
Score = 730 (262.0 bits), Expect = 3.2e-72, P = 3.2e-72
Identities = 161/338 (47%), Positives = 209/338 (61%)
Query: 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVF-IVEG 177
M LVTGAAGF+G++ S L G V+G+DN N YYD +LK AR L+ F ++
Sbjct: 1 MKYLVTGAAGFIGANVSKRLCAMGHEVVGIDNLNDYYDVALKLARLAPLEALSNFHFIKL 60
Query: 178 DLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQ 237
DL D + KLF F V+HLAAQAGVRY++ NP +Y SN+ G + +LE C+ +
Sbjct: 61 DLADREGIAKLFAQQGFQRVIHLAAQAGVRYSLDNPLAYADSNLVGHLTILEGCRHHKIE 120
Query: 238 PSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIYGLALTGLRF 297
+V+ASSSSVYGLN ++PFS D P SLYAATKKA E ++HTY+H+Y L TGLRF
Sbjct: 121 -HLVYASSSSVYGLNQKMPFSTEDSVDHPISLYAATKKANELMSHTYSHLYQLPTTGLRF 179
Query: 298 FTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGATG--- 354
FTVYGPWGRPDMA F FTK IL G+TIDVY D ++RDFTYIDD+V+G +
Sbjct: 180 FTVYGPWGRPDMALFKFTKAILAGETIDVYNHGD---LSRDFTYIDDIVEGIIRVQDKPP 236
Query: 355 ---------SGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRNGD 405
+G A RV+N+GN SPV + ++ LE L +AKK + M + GD
Sbjct: 237 SPTPDWRVETGTPANSSAPYRVFNIGNGSPVQLLDFITALERALGIEAKKQFLPM-QPGD 295
Query: 406 VPYTHANVSLAYKDFGYKPTTDLAAGLRKFVKWYVSYY 443
V T A+ +K GYK D+ G+ KFV WY ++Y
Sbjct: 296 VHATWADTEDLFKAVGYKSQVDIDTGVAKFVDWYRNFY 333
|
|
| TIGR_CMR|SO_4686 SO_4686 "NAD dependent epimerase/dehydratase family protein" [Shewanella oneidensis MR-1 (taxid:211586)] | Back alignment and assigned GO terms |
|---|
Score = 730 (262.0 bits), Expect = 3.2e-72, P = 3.2e-72
Identities = 161/338 (47%), Positives = 209/338 (61%)
Query: 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVF-IVEG 177
M LVTGAAGF+G++ S L G V+G+DN N YYD +LK AR L+ F ++
Sbjct: 1 MKYLVTGAAGFIGANVSKRLCAMGHEVVGIDNLNDYYDVALKLARLAPLEALSNFHFIKL 60
Query: 178 DLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQ 237
DL D + KLF F V+HLAAQAGVRY++ NP +Y SN+ G + +LE C+ +
Sbjct: 61 DLADREGIAKLFAQQGFQRVIHLAAQAGVRYSLDNPLAYADSNLVGHLTILEGCRHHKIE 120
Query: 238 PSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIYGLALTGLRF 297
+V+ASSSSVYGLN ++PFS D P SLYAATKKA E ++HTY+H+Y L TGLRF
Sbjct: 121 -HLVYASSSSVYGLNQKMPFSTEDSVDHPISLYAATKKANELMSHTYSHLYQLPTTGLRF 179
Query: 298 FTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGATG--- 354
FTVYGPWGRPDMA F FTK IL G+TIDVY D ++RDFTYIDD+V+G +
Sbjct: 180 FTVYGPWGRPDMALFKFTKAILAGETIDVYNHGD---LSRDFTYIDDIVEGIIRVQDKPP 236
Query: 355 ---------SGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRNGD 405
+G A RV+N+GN SPV + ++ LE L +AKK + M + GD
Sbjct: 237 SPTPDWRVETGTPANSSAPYRVFNIGNGSPVQLLDFITALERALGIEAKKQFLPM-QPGD 295
Query: 406 VPYTHANVSLAYKDFGYKPTTDLAAGLRKFVKWYVSYY 443
V T A+ +K GYK D+ G+ KFV WY ++Y
Sbjct: 296 VHATWADTEDLFKAVGYKSQVDIDTGVAKFVDWYRNFY 333
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| Q9LIS3 | GAE6_ARATH | 5, ., 1, ., 3, ., 6 | 0.7813 | 0.9381 | 0.9565 | yes | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| Your Input: | |||||||||||
| estExt_fgenesh4_pg.C_LG_I2408 | SubName- Full=Putative uncharacterized protein; (458 aa) | ||||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| estExt_fgenesh4_pm.C_LG_XVII0156 | UDP-glucose 6-dehydrogenase (EC-1.1.1.22) (481 aa) | • | • | 0.911 | |||||||
| eugene3.00101501 | UDP-glucose 6-dehydrogenase (EC-1.1.1.22) (480 aa) | • | • | 0.910 | |||||||
| estExt_fgenesh4_pm.C_LG_VIII0382 | UDP-glucose 6-dehydrogenase (EC-1.1.1.22) (480 aa) | • | • | 0.910 | |||||||
| gw1.XVI.562.1 | glycosyltransferase, CAZy family GT8 (EC-2.4.1.43) (610 aa) | • | 0.899 | ||||||||
| gw1.XIV.923.1 | glycosyltransferase (517 aa) | • | 0.899 | ||||||||
| gw1.VIII.1451.1 | glycosyltransferase (EC-2.4.1.43) (490 aa) | • | 0.899 | ||||||||
| gw1.II.1063.1 | glycosyltransferase (519 aa) | • | 0.899 | ||||||||
| gw1.66.585.1 | glycosyltransferase, family GT8 (EC-2.4.1.43) (523 aa) | • | 0.899 | ||||||||
| gw1.28.1092.1 | glycosyltransferase (EC-2.4.1.43) (475 aa) | • | 0.899 | ||||||||
| gw1.123.42.1 | polygalacturonate 4-alpha-galacturonosyltransferase (EC-2.4.1.43) (504 aa) | • | 0.899 | ||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 469 | |||
| cd05253 | 332 | cd05253, UDP_GE_SDE_e, UDP glucuronic acid epimera | 1e-165 | |
| cd05256 | 304 | cd05256, UDP_AE_SDR_e, UDP-N-acetylglucosamine 4-e | 4e-76 | |
| COG0451 | 314 | COG0451, WcaG, Nucleoside-diphosphate-sugar epimer | 2e-67 | |
| cd08946 | 200 | cd08946, SDR_e, extended (e) SDRs | 6e-50 | |
| pfam01370 | 233 | pfam01370, Epimerase, NAD dependent epimerase/dehy | 2e-46 | |
| cd05247 | 323 | cd05247, UDP_G4E_1_SDR_e, UDP-glucose 4 epimerase, | 1e-43 | |
| cd05264 | 300 | cd05264, UDP_G4E_5_SDR_e, UDP-glucose 4-epimerase | 6e-43 | |
| COG1087 | 329 | COG1087, GalE, UDP-glucose 4-epimerase [Cell envel | 1e-41 | |
| cd05258 | 337 | cd05258, CDP_TE_SDR_e, CDP-tyvelose 2-epimerase, e | 4e-37 | |
| cd05257 | 316 | cd05257, Arna_like_SDR_e, Arna decarboxylase_like, | 1e-36 | |
| cd05230 | 305 | cd05230, UGD_SDR_e, UDP-glucuronate decarboxylase | 5e-33 | |
| cd05260 | 316 | cd05260, GDP_MD_SDR_e, GDP-mannose 4,6 dehydratase | 2e-30 | |
| TIGR01179 | 328 | TIGR01179, galE, UDP-glucose-4-epimerase GalE | 2e-30 | |
| PRK15181 | 348 | PRK15181, PRK15181, Vi polysaccharide biosynthesis | 2e-29 | |
| COG1088 | 340 | COG1088, RfbB, dTDP-D-glucose 4,6-dehydratase [Cel | 2e-29 | |
| cd05246 | 315 | cd05246, dTDP_GD_SDR_e, dTDP-D-glucose 4,6-dehydra | 3e-29 | |
| cd05273 | 328 | cd05273, GME-like_SDR_e, Arabidopsis thaliana GDP- | 1e-27 | |
| cd05234 | 305 | cd05234, UDP_G4E_2_SDR_e, UDP-glucose 4 epimerase, | 2e-27 | |
| TIGR04180 | 297 | TIGR04180, EDH_00030, NAD dependent epimerase/dehy | 2e-27 | |
| cd08957 | 307 | cd08957, WbmH_like_SDR_e, Bordetella bronchiseptic | 2e-25 | |
| TIGR02197 | 314 | TIGR02197, heptose_epim, ADP-L-glycero-D-manno-hep | 3e-25 | |
| TIGR01181 | 317 | TIGR01181, dTDP_gluc_dehyt, dTDP-glucose 4,6-dehyd | 7e-25 | |
| PLN02240 | 352 | PLN02240, PLN02240, UDP-glucose 4-epimerase | 9e-24 | |
| PRK10675 | 338 | PRK10675, PRK10675, UDP-galactose-4-epimerase; Pro | 2e-23 | |
| cd05248 | 317 | cd05248, ADP_GME_SDR_e, ADP-L-glycero-D-mannohepto | 1e-21 | |
| cd05252 | 336 | cd05252, CDP_GD_SDR_e, CDP-D-glucose 4,6-dehydrata | 3e-21 | |
| PLN02695 | 370 | PLN02695, PLN02695, GDP-D-mannose-3',5'-epimerase | 2e-18 | |
| PLN02260 | 668 | PLN02260, PLN02260, probable rhamnose biosynthetic | 4e-18 | |
| COG1089 | 345 | COG1089, Gmd, GDP-D-mannose dehydratase [Cell enve | 8e-18 | |
| PLN02166 | 436 | PLN02166, PLN02166, dTDP-glucose 4,6-dehydratase | 8e-18 | |
| PLN02206 | 442 | PLN02206, PLN02206, UDP-glucuronate decarboxylase | 1e-17 | |
| cd05239 | 300 | cd05239, GDP_FS_SDR_e, GDP-fucose synthetase, exte | 2e-17 | |
| cd05241 | 331 | cd05241, 3b-HSD-like_SDR_e, 3beta-hydroxysteroid d | 2e-15 | |
| cd05238 | 305 | cd05238, Gne_like_SDR_e, Escherichia coli Gne (a n | 4e-15 | |
| PRK10217 | 355 | PRK10217, PRK10217, dTDP-glucose 4,6-dehydratase; | 1e-14 | |
| cd05228 | 318 | cd05228, AR_FR_like_1_SDR_e, uncharacterized subgr | 2e-14 | |
| cd05240 | 306 | cd05240, UDP_G4E_3_SDR_e, UDP-glucose 4 epimerase | 1e-13 | |
| TIGR01472 | 343 | TIGR01472, gmd, GDP-mannose 4,6-dehydratase | 2e-12 | |
| cd05255 | 382 | cd05255, SQD1_like_SDR_e, UDP_sulfoquinovose_synth | 2e-12 | |
| cd09813 | 335 | cd09813, 3b-HSD-NSDHL-like_SDR_e, human NSDHL (NAD | 3e-12 | |
| cd05261 | 248 | cd05261, CAPF_like_SDR_e, capsular polysaccharide | 1e-11 | |
| PLN02653 | 340 | PLN02653, PLN02653, GDP-mannose 4,6-dehydratase | 3e-11 | |
| PRK10084 | 352 | PRK10084, PRK10084, dTDP-glucose 4,6 dehydratase; | 3e-11 | |
| TIGR02622 | 349 | TIGR02622, CDP_4_6_dhtase, CDP-glucose 4,6-dehydra | 2e-10 | |
| cd05237 | 287 | cd05237, UDP_invert_4-6DH_SDR_e, UDP-Glcnac (UDP-l | 5e-10 | |
| cd05226 | 176 | cd05226, SDR_e_a, Extended (e) and atypical (a) SD | 1e-09 | |
| cd09811 | 354 | cd09811, 3b-HSD_HSDB1_like_SDR_e, human 3beta-HSD | 1e-09 | |
| cd05265 | 250 | cd05265, SDR_a1, atypical (a) SDRs, subgroup 1 | 2e-09 | |
| cd05254 | 280 | cd05254, dTDP_HR_like_SDR_e, dTDP-6-deoxy-L-lyxo-4 | 3e-09 | |
| pfam01073 | 280 | pfam01073, 3Beta_HSD, 3-beta hydroxysteroid dehydr | 7e-09 | |
| cd05272 | 308 | cd05272, TDH_SDR_e, L-threonine dehydrogenase, ext | 4e-08 | |
| TIGR03466 | 328 | TIGR03466, HpnA, hopanoid-associated sugar epimera | 4e-07 | |
| COG1086 | 588 | COG1086, COG1086, Predicted nucleoside-diphosphate | 1e-06 | |
| COG1091 | 281 | COG1091, RfbD, dTDP-4-dehydrorhamnose reductase [C | 1e-06 | |
| cd05193 | 295 | cd05193, AR_like_SDR_e, aldehyde reductase, flavon | 2e-06 | |
| COG1090 | 297 | COG1090, COG1090, Predicted nucleoside-diphosphate | 3e-06 | |
| PLN02572 | 442 | PLN02572, PLN02572, UDP-sulfoquinovose synthase | 3e-06 | |
| pfam04321 | 284 | pfam04321, RmlD_sub_bind, RmlD substrate binding d | 4e-06 | |
| PLN02725 | 306 | PLN02725, PLN02725, GDP-4-keto-6-deoxymannose-3,5- | 4e-06 | |
| PRK11908 | 347 | PRK11908, PRK11908, NAD-dependent epimerase/dehydr | 1e-05 | |
| cd05227 | 301 | cd05227, AR_SDR_e, aldehyde reductase, extended (e | 2e-05 | |
| cd05232 | 303 | cd05232, UDP_G4E_4_SDR_e, UDP-glucose 4 epimerase, | 6e-05 | |
| PRK11150 | 308 | PRK11150, rfaD, ADP-L-glycero-D-mannoheptose-6-epi | 6e-05 | |
| cd05242 | 296 | cd05242, SDR_a8, atypical (a) SDRs, subgroup 8 | 2e-04 | |
| TIGR01777 | 291 | TIGR01777, yfcH, TIGR01777 family protein | 3e-04 | |
| cd05263 | 293 | cd05263, MupV_like_SDR_e, Pseudomonas fluorescens | 4e-04 | |
| cd05245 | 293 | cd05245, SDR_a2, atypical (a) SDRs, subgroup 2 | 8e-04 | |
| TIGR03589 | 324 | TIGR03589, PseB, UDP-N-acetylglucosamine 4,6-dehyd | 0.001 | |
| pfam02719 | 280 | pfam02719, Polysacc_synt_2, Polysaccharide biosynt | 0.001 | |
| PLN02896 | 353 | PLN02896, PLN02896, cinnamyl-alcohol dehydrogenase | 0.002 | |
| TIGR01214 | 287 | TIGR01214, rmlD, dTDP-4-dehydrorhamnose reductase | 0.004 | |
| PLN02986 | 322 | PLN02986, PLN02986, cinnamyl-alcohol dehydrogenase | 0.004 |
| >gnl|CDD|187563 cd05253, UDP_GE_SDE_e, UDP glucuronic acid epimerase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 468 bits (1207), Expect = e-165
Identities = 179/337 (53%), Positives = 227/337 (67%), Gaps = 18/337 (5%)
Query: 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVF-IVEG 177
M +LVTGAAGF+G H + L +RGD V+G+DN N YYD LK AR +LL K F V+G
Sbjct: 1 MKILVTGAAGFIGFHVAKRLLERGDEVVGIDNLNDYYDVRLKEARLELLGKSGGFKFVKG 60
Query: 178 DLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQ 237
DL D L +LF F V+HLAAQAGVRY+++NP +YV SNI GF+NLLE+C+ +
Sbjct: 61 DLEDREALRRLFKDHEFDAVIHLAAQAGVRYSLENPHAYVDSNIVGFLNLLELCRHFGVK 120
Query: 238 PSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIYGLALTGLRF 297
+V+ASSSSVYGLNT++PFSE R D P SLYAATKKA E +AHTY+H+YG+ TGLRF
Sbjct: 121 -HLVYASSSSVYGLNTKMPFSEDDRVDHPISLYAATKKANELMAHTYSHLYGIPTTGLRF 179
Query: 298 FTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGA----- 352
FTVYGPWGRPDMA F FTK IL+GK IDV+ +D ++RDFTYIDD+V+G V A
Sbjct: 180 FTVYGPWGRPDMALFLFTKAILEGKPIDVF---NDGNMSRDFTYIDDIVEGVVRALDTPA 236
Query: 353 -------TGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRNGD 405
+ A RVYN+GN SPV + + LE L KAKK+ + M + GD
Sbjct: 237 KPNPNWDAEAPDPSTSSAPYRVYNIGNNSPVKLMDFIEALEKALGKKAKKNYLPMQK-GD 295
Query: 406 VPYTHANVSLAYKDFGYKPTTDLAAGLRKFVKWYVSY 442
VP T+A++S + GYKP T L G+++FV+WY
Sbjct: 296 VPETYADISKLQRLLGYKPKTSLEEGVKRFVEWYKEN 332
|
This subgroup contains UDP-D-glucuronic acid 4-epimerase, an extended SDR, which catalyzes the conversion of UDP-alpha-D-glucuronic acid to UDP-alpha-D-galacturonic acid. This group has the SDR's canonical catalytic tetrad and the TGxxGxxG NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 332 |
| >gnl|CDD|187566 cd05256, UDP_AE_SDR_e, UDP-N-acetylglucosamine 4-epimerase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 240 bits (614), Expect = 4e-76
Identities = 112/323 (34%), Positives = 163/323 (50%), Gaps = 24/323 (7%)
Query: 121 VLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLN 180
VLVTG AGF+GSH L +RG V+ LDN ++ +L + + +EGD+
Sbjct: 2 VLVTGGAGFIGSHLVERLLERGHEVIVLDNLSTGKKENLPEVKPNVK------FIEGDIR 55
Query: 181 DAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSI 240
D L+ F+ V +V H AAQA V ++++P N+ G +NLLE + +
Sbjct: 56 DDELVEFAFEGV--DYVFHQAAQASVPRSIEDPIKDHEVNVLGTLNLLEAARKAGVK-RF 112
Query: 241 VWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIYGLALTGLRFFTV 300
V+ASSSSVYG +P E H P S YA +K AGE + +YGL LR+F V
Sbjct: 113 VYASSSSVYGDPPYLPKDEDHPP-NPLSPYAVSKYAGELYCQVFARLYGLPTVSLRYFNV 171
Query: 301 YGPWGRPDMAYF----FFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGATGSG 356
YGP P+ Y F + L+G+ +Y D E RDFTY++DVV+ + A +G
Sbjct: 172 YGPRQDPNGGYAAVIPIFIERALKGEPPTIY---GDGEQTRDFTYVEDVVEANLLAATAG 228
Query: 357 GKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRNGDVPYTHANVSLA 416
VYN+G V L ++ +L + + V PR GDV ++ A++S A
Sbjct: 229 AGG------EVYNIGTGKRTSVNELAELIREILGKELEP-VYAPPRPGDVRHSLADISKA 281
Query: 417 YKDFGYKPTTDLAAGLRKFVKWY 439
K G++P GLR V+W+
Sbjct: 282 KKLLGWEPKVSFEEGLRLTVEWF 304
|
This subgroup contains UDP-N-acetylglucosamine 4-epimerase of Pseudomonas aeruginosa, WbpP, an extended SDR, that catalyzes the NAD+ dependent conversion of UDP-GlcNAc and UDPGalNA to UDP-Glc and UDP-Gal. This subgroup has the characteristic active site tetrad and NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 304 |
| >gnl|CDD|223528 COG0451, WcaG, Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 218 bits (556), Expect = 2e-67
Identities = 102/335 (30%), Positives = 154/335 (45%), Gaps = 29/335 (8%)
Query: 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGD 178
M +LVTG AGF+GSH L G V GLD DP L V D
Sbjct: 1 MRILVTGGAGFIGSHLVERLLAAGHDVRGLDRLRDGLDPLLSGVEF----------VVLD 50
Query: 179 LNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAM-QNPQSYVASNIAGFVNLLEVCKSVNPQ 237
L D L+ +L VP V+HLAAQ+ V + +P ++ N+ G +NLLE ++ +
Sbjct: 51 LTDRDLVDELAKGVP-DAVIHLAAQSSVPDSNASDPAEFLDVNVDGTLNLLEAARAAGVK 109
Query: 238 PSIVWASSSSVYGLNTQV-PFSESHRTDQPASLYAATKKAGEEIAHTYNHIYGLALTGLR 296
V+ASS SV + P E +P + Y +K A E++ Y +YGL + LR
Sbjct: 110 R-FVFASSVSVVYGDPPPLPIDEDLGPPRPLNPYGVSKLAAEQLLRAYARLYGLPVVILR 168
Query: 297 FFTVYGPWGRPDMAYFF---FTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGAT 353
F VYGP +PD++ F + +L+G+ I V D RDF Y+DDV + A
Sbjct: 169 PFNVYGPGDKPDLSSGVVSAFIRQLLKGEPIIVIG--GDGSQTRDFVYVDDVADALLLAL 226
Query: 354 GSGGKKRGPAQLRVYNLGN-TSPVPVGRLVSILENLLNTKAKK-HVIRMPRNGDV-PYTH 410
+ V+N+G+ T+ + V L + + +KA I + R GD+
Sbjct: 227 ENPD-------GGVFNIGSGTAEITVRELAEAVAEAVGSKAPLIVYIPLGRRGDLREGKL 279
Query: 411 ANVSLAYKDFGYKPTTDLAAGLRKFVKWYVSYYGI 445
++S A G++P L GL ++W + +
Sbjct: 280 LDISKARAALGWEPKVSLEEGLADTLEWLLKKLEL 314
|
Length = 314 |
| >gnl|CDD|212494 cd08946, SDR_e, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 168 bits (428), Expect = 6e-50
Identities = 76/253 (30%), Positives = 106/253 (41%), Gaps = 55/253 (21%)
Query: 121 VLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLN 180
+LVTG AGF+GSH L +RG V+ +D
Sbjct: 1 ILVTGGAGFIGSHLVRRLLERGHEVVVIDRL----------------------------- 31
Query: 181 DAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSI 240
V+HLAA GV + NP +N+ G +NLLE + +
Sbjct: 32 --------------DVVVHLAALVGVPASWDNPDEDFETNVVGTLNLLEAARKAGVKR-F 76
Query: 241 VWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIYGLALTGLRFFTV 300
V+ASS+SVYG +P E +P S Y +K A E + +Y YGL + LR V
Sbjct: 77 VYASSASVYGSPEGLPEEEETPP-RPLSPYGVSKLAAEHLLRSYGESYGLPVVILRLANV 135
Query: 301 YGPWGRP--DMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGATGSGGK 358
YGP RP D F + L+GK + V+ RDF ++DDVV+ + A
Sbjct: 136 YGPGQRPRLDGVVNDFIRRALEGKPLTVF---GGGNQTRDFIHVDDVVRAILHAL----- 187
Query: 359 KRGPAQLRVYNLG 371
+ VYN+G
Sbjct: 188 ENPLEGGGVYNIG 200
|
Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 200 |
| >gnl|CDD|216461 pfam01370, Epimerase, NAD dependent epimerase/dehydratase family | Back alignment and domain information |
|---|
Score = 160 bits (406), Expect = 2e-46
Identities = 85/254 (33%), Positives = 116/254 (45%), Gaps = 24/254 (9%)
Query: 121 VLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLN 180
+LVTG GF+GSH L + G V+ L +R R + L ++ EGDL
Sbjct: 1 ILVTGGTGFIGSHLVRRLLQEGYEVIVL----------GRRRRSESLNTGRIRFHEGDLT 50
Query: 181 DAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSI 240
D L +L V V+HLAAQ+GV + ++P ++ +N+ G + LLE +
Sbjct: 51 DPDALERLLAEVQPDAVIHLAAQSGVGASFEDPADFIRANVLGTLRLLEAARRAGV-KRF 109
Query: 241 VWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIYGLALTGLRFFTV 300
V+ASSS VYG P +E P S YAA K A E + Y YGL LR F V
Sbjct: 110 VFASSSEVYGDVADPPITEDTPLG-PLSPYAAAKLAAERLVEAYARAYGLRAVILRLFNV 168
Query: 301 YGPW---GRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGATGSGG 357
YGP + IL+GK I + D RDF Y+DDV + + A
Sbjct: 169 YGPGNPDPFVTHVIPALIRRILEGKPILLL---GDGTQRRDFLYVDDVARAILLAL---- 221
Query: 358 KKRGPAQLRVYNLG 371
P +YN+G
Sbjct: 222 --EHPDGGEIYNIG 233
|
This family of proteins utilise NAD as a cofactor. The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions. Length = 233 |
| >gnl|CDD|187558 cd05247, UDP_G4E_1_SDR_e, UDP-glucose 4 epimerase, subgroup 1, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 156 bits (396), Expect = 1e-43
Identities = 101/346 (29%), Positives = 148/346 (42%), Gaps = 50/346 (14%)
Query: 120 TVLVTGAAGFVGSHCSLALKKRGDGVLGLDNF-NSYYDPSLKRARQKLLQKHQVFIVEGD 178
VLVTG AG++GSH + L + G V+ LDN N + + +L R ++K ++ EGD
Sbjct: 1 KVLVTGGAGYIGSHTVVELLEAGYDVVVLDNLSNGHRE-ALPR-----IEKIRIEFYEGD 54
Query: 179 LNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCK--SVNP 236
+ D L K+F V+H AA V ++Q P Y +N+ G +NLLE + V
Sbjct: 55 IRDRAALDKVFAEHKIDAVIHFAALKAVGESVQKPLKYYDNNVVGTLNLLEAMRAHGVK- 113
Query: 237 QPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIYGLALTGLR 296
+ V++SS++VYG VP +E P + Y TK E+I GL LR
Sbjct: 114 --NFVFSSSAAVYGEPETVPITEEAPL-NPTNPYGRTKLMVEQILRDLAKAPGLNYVILR 170
Query: 297 FFTVYG--PWGR------------PDMAYFFFTKDILQGKTI--DVYKTQDDREVARDFT 340
+F G P G P + + + I D Y T D V RD+
Sbjct: 171 YFNPAGAHPSGLIGEDPQIPNNLIPYVLQVALGR--REKLAIFGDDYPTPDGTCV-RDYI 227
Query: 341 YIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKK----- 395
++ D+ V A K +YNLG GR S+LE ++ +K
Sbjct: 228 HVVDLADAHVLAL---EKLENGGGSEIYNLGT------GRGYSVLE-VVEA-FEKVSGKP 276
Query: 396 --HVIRMPRNGDVPYTHANVSLAYKDFGYKPTTDLAAGLRKFVKWY 439
+ I R GD A+ S A ++ G+KP DL W
Sbjct: 277 IPYEIAPRRAGDPASLVADPSKAREELGWKPKRDLEDMCEDAWNWQ 322
|
UDP-glucose 4 epimerase (aka UDP-galactose-4-epimerase), is a homodimeric extended SDR. It catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. This subgroup has the characteristic active site tetrad and NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 323 |
| >gnl|CDD|187574 cd05264, UDP_G4E_5_SDR_e, UDP-glucose 4-epimerase (G4E), subgroup 5, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 153 bits (388), Expect = 6e-43
Identities = 96/323 (29%), Positives = 145/323 (44%), Gaps = 30/323 (9%)
Query: 121 VLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLN 180
VL+ G GF+GSH AL + G V D Y+ L V ++GD
Sbjct: 2 VLIVGGNGFIGSHLVDALLEEGPQVRVFDRSIPPYELPLGG----------VDYIKGDYE 51
Query: 181 DAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSI 240
+ L +V V+HLA+ + +NP + +N+A V LLE C + I
Sbjct: 52 NRADLESA--LVGIDTVIHLASTTNPATSNKNPILDIQTNVAPTVQLLEACAAAGIGKII 109
Query: 241 VWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIYGLALTGLRFFTV 300
+S +VYG+ Q+P SES T P S Y +K A E+ Y ++YGL T LR
Sbjct: 110 FASSGGTVYGVPEQLPISESDPTL-PISSYGISKLAIEKYLRLYQYLYGLDYTVLRISNP 168
Query: 301 YGPWGRPD-----MAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGATGS 355
YGP RPD + IL+G+ I+++ D E RD+ YIDD+V+ + S
Sbjct: 169 YGPGQRPDGKQGVIPIALNK--ILRGEPIEIW---GDGESIRDYIYIDDLVEALMALLRS 223
Query: 356 GGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRNGDVPYTHANVSL 415
G + V+N+G+ + L++ +E + + R DVP ++S
Sbjct: 224 KGLE------EVFNIGSGIGYSLAELIAEIEKVTGRSVQVIY-TPARTTDVPKIVLDISR 276
Query: 416 AYKDFGYKPTTDLAAGLRKFVKW 438
A + G+ P L GL K +W
Sbjct: 277 ARAELGWSPKISLEDGLEKTWQW 299
|
This subgroup partially conserves the characteristic active site tetrad and NAD-binding motif of the extended SDRs, and has been identified as possible UDP-glucose 4-epimerase (aka UDP-galactose 4-epimerase), a homodimeric member of the extended SDR family. UDP-glucose 4-epimerase catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 300 |
| >gnl|CDD|224012 COG1087, GalE, UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 150 bits (382), Expect = 1e-41
Identities = 96/346 (27%), Positives = 144/346 (41%), Gaps = 50/346 (14%)
Query: 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGD 178
M VLVTG AG++GSH L K G V+ LDN L + L K Q EGD
Sbjct: 1 MKVLVTGGAGYIGSHTVRQLLKTGHEVVVLDN--------LSNGHKIALLKLQFKFYEGD 52
Query: 179 LNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQP 238
L D LLT +F+ V+H AA V ++QNP Y +N+ G +NL+E +
Sbjct: 53 LLDRALLTAVFEENKIDAVVHFAASISVGESVQNPLKYYDNNVVGTLNLIEAMLQTGVK- 111
Query: 239 SIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIYGLALTGLRFF 298
+++S+++VYG T P SE+ P + Y +K EEI + LR+F
Sbjct: 112 KFIFSSTAAVYGEPTTSPISETSPLA-PINPYGRSKLMSEEILRDAAKANPFKVVILRYF 170
Query: 299 TVYGPWGRPDMAYFF--FTKD-------ILQ---GKT--IDV----YKTQDDREVARDFT 340
V G + GK + + Y T+D + RD+
Sbjct: 171 NVAG----ACPDGTLGQRYPGATLLIPVAAEAALGKRDKLFIFGDDYDTKDGTCI-RDYI 225
Query: 341 YIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNT--KAKKH-- 396
++DD+ V A + ++NLG+ G S+LE ++ K
Sbjct: 226 HVDDLADAHVLAL---KYLKEGGSNNIFNLGS------GNGFSVLE-VIEAAKKVTGRDI 275
Query: 397 --VIRMPRNGDVPYTHANVSLAYKDFGYKPT-TDLAAGLRKFVKWY 439
I R GD A+ S A + G++PT DL ++ W+
Sbjct: 276 PVEIAPRRAGDPAILVADSSKARQILGWQPTYDDLEDIIKDAWDWH 321
|
Length = 329 |
| >gnl|CDD|187568 cd05258, CDP_TE_SDR_e, CDP-tyvelose 2-epimerase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 138 bits (350), Expect = 4e-37
Identities = 86/353 (24%), Positives = 140/353 (39%), Gaps = 48/353 (13%)
Query: 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVF-IVEG 177
M VL+TG AGF+GS+ + K+G V+G DN A K ++ V G
Sbjct: 1 MRVLITGGAGFIGSNLARFFLKQGWEVIGFDNLMRRGS-FGNLAWLKANREDGGVRFVHG 59
Query: 178 DLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQ 237
D+ + L LF ++H AAQ V + +P+ +N G +N+LE + P
Sbjct: 60 DIRNRNDLEDLF--EDIDLIIHTAAQPSVTTSASSPRLDFETNALGTLNVLEAARQHAPN 117
Query: 238 PSIVWASSSSVYG--------------------LNTQVPFSESHRTDQPASLYAATKKAG 277
++ S++ VYG + SES D SLY A+K A
Sbjct: 118 APFIFTSTNKVYGDLPNYLPLEELETRYELAPEGWSPAGISESFPLDFSHSLYGASKGAA 177
Query: 278 EEIAHTYNHIYGLALTGLRFFTVYGPW--GRPDMAYF-FFTKDILQGKTIDVY---KTQD 331
++ Y I+GL R + GP G D + +F K + GK + ++ Q
Sbjct: 178 DQYVQEYGRIFGLKTVVFRCGCLTGPRQFGTEDQGWVAYFLKCAVTGKPLTIFGYGGKQ- 236
Query: 332 DREVARDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILE--NLL 389
RD + D+V + + +++G V+N+G VS+LE L
Sbjct: 237 ----VRDVLHSADLVNLYLRQFQNPDRRKG----EVFNIGGG----RENSVSLLELIALC 284
Query: 390 NTKAKKHVIRMP---RNGDVPYTHANVSLAYKDFGYKPTTDLAAGLRKFVKWY 439
+ + R GD + +++ + G+KP D L + W
Sbjct: 285 EEITGRKMESYKDENRPGDQIWYISDIRKIKEKPGWKPERDPREILAEIYAWI 337
|
CDP-tyvelose 2-epimerase is a tetrameric SDR that catalyzes the conversion of CDP-D-paratose to CDP-D-tyvelose, the last step in tyvelose biosynthesis. This subgroup is a member of the extended SDR subfamily, with a characteristic active site tetrad and NAD-binding motif. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 337 |
| >gnl|CDD|187567 cd05257, Arna_like_SDR_e, Arna decarboxylase_like, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 137 bits (346), Expect = 1e-36
Identities = 94/336 (27%), Positives = 147/336 (43%), Gaps = 39/336 (11%)
Query: 120 TVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKH---QVFIVE 176
VLVTGA GF+GSH + L + G V LD +NS LL + +
Sbjct: 1 NVLVTGADGFIGSHLTERLLREGHEVRALDIYNS-------FNSWGLLDNAVHDRFHFIS 53
Query: 177 GDLNDAPL---LTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKS 233
GD+ DA L K DV V HLAA + Y+ P SYV +N+ G +N+LE
Sbjct: 54 GDVRDASEVEYLVKKCDV-----VFHLAALIAIPYSYTAPLSYVETNVFGTLNVLEAACV 108
Query: 234 VNPQPSIVWASSSSVYGLNTQVPFSESH---RTDQPASLYAATKKAGEEIAHTYNHIYGL 290
+ + +V S+S VYG VP E H ++P S Y+A+K+ + +A++Y +GL
Sbjct: 109 LYRKR-VVHTSTSEVYGTAQDVPIDEDHPLLYINKPRSPYSASKQGADRLAYSYGRSFGL 167
Query: 291 ALTGLRFFTVYGPWGRPDMAYFFFT--KDILQGKTIDVYKTQDDREVARDFTYIDDVVKG 348
+T +R F YGP R T G+ + D RDF ++ D +G
Sbjct: 168 PVTIIRPFNTYGP--RQSARAVIPTIISQRAIGQRLINL---GDGSPTRDFNFVKDTARG 222
Query: 349 CVGATGSGGKKRGPAQLRVYNLGNTSPVPVGR-----LVSILENLLNTKAKKHVIRMPRN 403
+ + A + N G+ + +G +V L ++ H P
Sbjct: 223 FIDILDA-----IEAVGEIINNGSGEEISIGNPAVELIVEELGEMVLIVYDDHREYRPGY 277
Query: 404 GDVPYTHANVSLAYKDFGYKPTTDLAAGLRKFVKWY 439
+V ++ A + G++P L GLR+ ++W+
Sbjct: 278 SEVERRIPDIRKAKRLLGWEPKYSLRDGLRETIEWF 313
|
Decarboxylase domain of ArnA. ArnA, is an enzyme involved in the modification of outer membrane protein lipid A of gram-negative bacteria. It is a bifunctional enzyme that catalyzes the NAD-dependent decarboxylation of UDP-glucuronic acid and N-10-formyltetrahydrofolate-dependent formylation of UDP-4-amino-4-deoxy-l-arabinose; its NAD-dependent decaboxylating activity is in the C-terminal 360 residues. This subgroup belongs to the extended SDR family, however the NAD binding motif is not a perfect match and the upstream Asn of the canonical active site tetrad is not conserved. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 316 |
| >gnl|CDD|187541 cd05230, UGD_SDR_e, UDP-glucuronate decarboxylase (UGD) and related proteins, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 126 bits (319), Expect = 5e-33
Identities = 90/329 (27%), Positives = 146/329 (44%), Gaps = 33/329 (10%)
Query: 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGD 178
+L+TG AGF+GSH L + G V+ +DNF + KR + L+ + D
Sbjct: 1 KRILITGGAGFLGSHLCDRLLEDGHEVICVDNFFT----GRKRNIEHLIGHPNFEFIRHD 56
Query: 179 LNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQP 238
+ + PL + D + HLA A + NP + +N+ G +N+L + K V +
Sbjct: 57 VTE-PLYLE-VDQ-----IYHLACPASPVHYQYNPIKTLKTNVLGTLNMLGLAKRVGAR- 108
Query: 239 SIVWASSSSVYGLNTQVPFSESHR----TDQPASLYAATKKAGEEIAHTYNHIYGLALTG 294
++ AS+S VYG P ES+ P S Y K+ E + Y+ +G+ +
Sbjct: 109 -VLLASTSEVYGDPEVHPQPESYWGNVNPIGPRSCYDEGKRVAETLCMAYHRQHGVDVRI 167
Query: 295 LRFFTVYGPWGRPDMAYFF--FTKDILQGKTIDVYK--TQDDREVARDFTYIDDVVKGCV 350
R F YGP P+ F L+G+ I VY TQ R F Y+ D+V+G +
Sbjct: 168 ARIFNTYGPRMHPNDGRVVSNFIVQALRGEPITVYGDGTQ-----TRSFQYVSDLVEGLI 222
Query: 351 GATGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRNGDVPYTH 410
S GP NLGN + L +++ L +K++ V D
Sbjct: 223 RLMNSDY-FGGP-----VNLGNPEEFTILELAELVKKLTGSKSEI-VFLPLPEDDPKRRR 275
Query: 411 ANVSLAYKDFGYKPTTDLAAGLRKFVKWY 439
++S A + G++P L GLR+ ++++
Sbjct: 276 PDISKAKELLGWEPKVPLEEGLRRTIEYF 304
|
UGD catalyzes the formation of UDP-xylose from UDP-glucuronate; it is an extended-SDR, and has the characteristic glycine-rich NAD-binding pattern, TGXXGXXG, and active site tetrad. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 305 |
| >gnl|CDD|187570 cd05260, GDP_MD_SDR_e, GDP-mannose 4,6 dehydratase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 120 bits (302), Expect = 2e-30
Identities = 82/324 (25%), Positives = 126/324 (38%), Gaps = 36/324 (11%)
Query: 120 TVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDL 179
L+TG G GS+ + L ++G V G+ +S + R + K ++ + GDL
Sbjct: 1 RALITGITGQDGSYLAEFLLEKGYEVHGIVRRSS--SFNTDRIDHLYINKDRITLHYGDL 58
Query: 180 NDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPS 239
D+ L + + V + HLAAQ+ V+ + +P+ N G +NLLE + +
Sbjct: 59 TDSSSLRRAIEKVRPDEIYHLAAQSHVKVSFDDPEYTAEVNAVGTLNLLEAIRILGLDAR 118
Query: 240 IVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIYGL-ALTGLRFF 298
ASSS YG ++P SE+ +P S YA +K + I Y YGL A+ G R F
Sbjct: 119 FYQASSSEEYGKVQELPQSETT-PFRPRSPYAVSKLYADWITRNYREAYGLFAVNG-RLF 176
Query: 299 TVYGPWGRPDMAYFFFTKD-------ILQGKTIDVYKTQ--DDREVARDFTYIDDVVKG- 348
GP R + F T+ I G V K D + RD+ D V+
Sbjct: 177 NHEGP-RRGET---FVTRKITRQVARIKAGL-QPVLKLGNLDAK---RDWGDARDYVEAY 228
Query: 349 -CVGATGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMP---RNG 404
+ G Y + V V + V P R
Sbjct: 229 WLLLQQGEPD---------DYVIATGETHSVREFVELAFEESGLTGDIEVEIDPRYFRPT 279
Query: 405 DVPYTHANVSLAYKDFGYKPTTDL 428
+V + S A ++ G+KP
Sbjct: 280 EVDLLLGDPSKAREELGWKPEVSF 303
|
GDP-mannose 4,6 dehydratase, a homodimeric SDR, catalyzes the NADP(H)-dependent conversion of GDP-(D)-mannose to GDP-4-keto, 6-deoxy-(D)-mannose in the fucose biosynthesis pathway. These proteins have the canonical active site triad and NAD-binding pattern, however the active site Asn is often missing and may be substituted with Asp. A Glu residue has been identified as an important active site base. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 316 |
| >gnl|CDD|213592 TIGR01179, galE, UDP-glucose-4-epimerase GalE | Back alignment and domain information |
|---|
Score = 119 bits (301), Expect = 2e-30
Identities = 99/336 (29%), Positives = 145/336 (43%), Gaps = 49/336 (14%)
Query: 121 VLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLN 180
+LVTG AG++GSH L + G V+ LDN ++ +L R + V VEGDL
Sbjct: 2 ILVTGGAGYIGSHTVRQLLESGHEVVILDNLSNGSREALPR----GERITPVTFVEGDLR 57
Query: 181 DAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSI 240
D LL +LF+ V+H A V ++Q P Y +N+ G +NLLE + +
Sbjct: 58 DRELLDRLFEEHKIDAVIHFAGLIAVGESVQKPLKYYRNNVVGTLNLLEAMQQAGVKK-F 116
Query: 241 VWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHI-YGLALTGLRFFT 299
+++SS++VYG + +P SE P + Y +K E+I + LR+F
Sbjct: 117 IFSSSAAVYGEPSSIPISEDSPL-GPINPYGRSKLMSEQILRDLQKADPDWSYVILRYFN 175
Query: 300 VYG--PWGRPDMAYFFFT---KDILQ---GK----TI--DVYKTQDDREVARDFTYIDDV 345
V G P G T Q GK TI Y T D V RD+ ++ D+
Sbjct: 176 VAGAHPSGDIGEDPPGITHLIPYACQVAVGKRDKLTIFGTDYPTPDGTCV-RDYIHVMDL 234
Query: 346 VKGCVGAT---GSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMP- 401
+ A +GG VYNLG G+ S+LE + +A K V
Sbjct: 235 ADAHLAALEYLLNGGGS------HVYNLGY------GQGFSVLEVI---EAFKKVSGKDF 279
Query: 402 -------RNGDVPYTHANVSLAYKDFGYKPT-TDLA 429
R GD A+ S ++ G++P TDL
Sbjct: 280 PVELAPRRPGDPASLVADASKIRRELGWQPKYTDLE 315
|
Alternate name: UDPgalactose 4-epimerase This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from This model and described by a separate model [Energy metabolism, Sugars]. Length = 328 |
| >gnl|CDD|185103 PRK15181, PRK15181, Vi polysaccharide biosynthesis protein TviC; Provisional | Back alignment and domain information |
|---|
Score = 117 bits (295), Expect = 2e-29
Identities = 94/328 (28%), Positives = 157/328 (47%), Gaps = 17/328 (5%)
Query: 122 LVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKH--QVFIVEGDL 179
L+TG AGF+GS L V+GLDNF++ Y +L R + ++ + ++GD+
Sbjct: 19 LITGVAGFIGSGLLEELLFLNQTVIGLDNFSTGYQHNLDDVRTSVSEEQWSRFIFIQGDI 78
Query: 180 NDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPS 239
K V + VLH AA V ++++P + ++NI GF+N+L + + S
Sbjct: 79 RKFTDCQKACKNVDY--VLHQAALGSVPRSLKDPIATNSANIDGFLNMLTAARDAHVS-S 135
Query: 240 IVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIYGLALTGLRFFT 299
+A+SSS YG + +P E R +P S YA TK E A + Y GLR+F
Sbjct: 136 FTYAASSSTYGDHPDLPKIE-ERIGRPLSPYAVTKYVNELYADVFARSYEFNAIGLRYFN 194
Query: 300 VYGPWGRPDMAY-FFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKG-CVGATGSGG 357
V+G P+ AY + IL + D +RDF YI++V++ + AT +
Sbjct: 195 VFGRRQNPNGAYSAVIPRWILSLLKDEPIYINGDGSTSRDFCYIENVIQANLLSATTNDL 254
Query: 358 KKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMP-----RNGDVPYTHAN 412
+ +VYN+ + L ++ + LN + P R+GDV ++ A+
Sbjct: 255 ASKN----KVYNVAVGDRTSLNELYYLIRDGLNLWRNEQSRAEPIYKDFRDGDVKHSQAD 310
Query: 413 VSLAYKDFGYKPTTDLAAGLRKFVKWYV 440
++ Y+P D+ GL++ +KWY+
Sbjct: 311 ITKIKTFLSYEPEFDIKEGLKQTLKWYI 338
|
Length = 348 |
| >gnl|CDD|224013 COG1088, RfbB, dTDP-D-glucose 4,6-dehydratase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 117 bits (295), Expect = 2e-29
Identities = 91/338 (26%), Positives = 144/338 (42%), Gaps = 35/338 (10%)
Query: 119 MTVLVTGAAGFVGSH-CSLALKKRGD-GVLGLD--NFNSYYDPSLKRARQKLLQKHQVFI 174
M +LVTG AGF+GS+ L K D V+ LD + + +L + +
Sbjct: 1 MKILVTGGAGFIGSNFVRYILNKHPDDHVVNLDKLTYAGNLE-NLA----DVEDSPRYRF 55
Query: 175 VEGDLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSV 234
V+GD+ D L+ +LF V+H AA++ V ++ P ++ +N+ G LLE +
Sbjct: 56 VQGDICDRELVDRLFKEYQPDAVVHFAAESHVDRSIDGPAPFIQTNVVGTYTLLEAARKY 115
Query: 235 NPQPSIVWASSSSVYG--LNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIYGLAL 292
+ S+ VYG F+E+ + P+S Y+A+K A + + Y YGL
Sbjct: 116 WGKFRFHHISTDEVYGDLGLDDDAFTETTPYN-PSSPYSASKAASDLLVRAYVRTYGLPA 174
Query: 293 TGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKG--CV 350
T R YGP+ P+ + L GK + VY D ++ RD+ Y++D + V
Sbjct: 175 TITRCSNNYGPYQFPEKLIPLMIINALLGKPLPVYG--DGLQI-RDWLYVEDHCRAIDLV 231
Query: 351 GATGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAK------KHVIRMPRNG 404
G G YN+G + +V + LL V R G
Sbjct: 232 LTKGKIG--------ETYNIGGGNERTNLEVVKTICELLGKDKPDYRDLITFV--EDRPG 281
Query: 405 -DVPYTHANVSLAYKDFGYKPTTDLAAGLRKFVKWYVS 441
D Y + S ++ G++P GLRK V WY+
Sbjct: 282 HDRRYA-IDASKIKRELGWRPQETFETGLRKTVDWYLD 318
|
Length = 340 |
| >gnl|CDD|187557 cd05246, dTDP_GD_SDR_e, dTDP-D-glucose 4,6-dehydratase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 116 bits (293), Expect = 3e-29
Identities = 93/330 (28%), Positives = 152/330 (46%), Gaps = 25/330 (7%)
Query: 119 MTVLVTGAAGFVGSH--CSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVE 176
M +LVTG AGF+GS+ L K ++ LD Y +L+ + + V+
Sbjct: 1 MKILVTGGAGFIGSNFVRYLLNKYPDYKIINLDKLT--YAGNLENLE-DVSSSPRYRFVK 57
Query: 177 GDLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNP 236
GD+ DA L+ +LF+ V+H AA++ V ++ +P+ ++ +N+ G LLE +
Sbjct: 58 GDICDAELVDRLFEEEKIDAVIHFAAESHVDRSISDPEPFIRTNVLGTYTLLEAAR-KYG 116
Query: 237 QPSIVWASSSSVYG-LNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIYGLALTGL 295
V S+ VYG L F+E+ P S Y+A+K A + + Y+ YGL +
Sbjct: 117 VKRFVHISTDEVYGDLLDDGEFTETSPLA-PTSPYSASKAAADLLVRAYHRTYGLPVVIT 175
Query: 296 RFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKG--CVGAT 353
R YGP+ P+ F + L GK + +Y D V RD+ Y++D + V
Sbjct: 176 RCSNNYGPYQFPEKLIPLFILNALDGKPLPIYG--DGLNV-RDWLYVEDHARAIELVLEK 232
Query: 354 GSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAK--KHVIRMPRNGDVPYTHA 411
G G +YN+G + + LV ++ LL +V P + D Y
Sbjct: 233 GRVG--------EIYNIGGGNELTNLELVKLILELLGKDESLITYVKDRPGH-DRRYA-I 282
Query: 412 NVSLAYKDFGYKPTTDLAAGLRKFVKWYVS 441
+ S ++ G++P GLRK V+WY+
Sbjct: 283 DSSKIRRELGWRPKVSFEEGLRKTVRWYLE 312
|
This subgroup contains dTDP-D-glucose 4,6-dehydratase and related proteins, members of the extended-SDR family, with the characteristic Rossmann fold core region, active site tetrad and NAD(P)-binding motif. dTDP-D-glucose 4,6-dehydratase is closely related to other sugar epimerases of the SDR family. dTDP-D-dlucose 4,6,-dehydratase catalyzes the second of four steps in the dTDP-L-rhamnose pathway (the dehydration of dTDP-D-glucose to dTDP-4-keto-6-deoxy-D-glucose) in the synthesis of L-rhamnose, a cell wall component of some pathogenic bacteria. In many gram negative bacteria, L-rhamnose is an important constituent of lipopoylsaccharide O-antigen. The larger N-terminal portion of dTDP-D-Glucose 4,6-dehydratase forms a Rossmann fold NAD-binding domain, while the C-terminus binds the sugar substrate. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 315 |
| >gnl|CDD|187581 cd05273, GME-like_SDR_e, Arabidopsis thaliana GDP-mannose-3',5'-epimerase (GME)-like, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 112 bits (281), Expect = 1e-27
Identities = 90/338 (26%), Positives = 126/338 (37%), Gaps = 45/338 (13%)
Query: 120 TVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDL 179
LVTGA GF+GSH + LK G V G D + + + DL
Sbjct: 2 RALVTGAGGFIGSHLAERLKAEGHYVRGADWKSPEHMTQPTDDDE---------FHLVDL 52
Query: 180 NDAPLLTKLFDVVPFTHVLHLAAQ-AGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQP 238
+ K + V HV HLAA G+ Y N + +N N+LE + +N
Sbjct: 53 REMENCLKATEGV--DHVFHLAADMGGMGYIQSNHAVIMYNNTLINFNMLEAAR-INGVE 109
Query: 239 SIVWASSSSVYGLNTQ-----VPFSESHRT-DQPASLYAATKKAGEEIAHTYNHIYGLAL 292
++ASS+ VY Q V E +P Y K A E + YN YG+
Sbjct: 110 RFLFASSACVYPEFKQLETTVVRLREEDAWPAEPQDAYGWEKLATERLCQHYNEDYGIET 169
Query: 293 TGLRFFTVYGPW-----GRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVK 347
+RF +YGP GR K K D ++ D R FTYIDD V+
Sbjct: 170 RIVRFHNIYGPRGTWDGGREKAPAAMCRKVAT-AKDGDRFEIWGDGLQTRSFTYIDDCVE 228
Query: 348 GCVGATGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRNGDVP 407
G S P NLG+ +VS+ E L + P
Sbjct: 229 GLRRLMES--DFGEPV-----NLGS------DEMVSMNE-LAEMVLSFSGKPLEIIHHTP 274
Query: 408 ------YTHANVSLAYKDFGYKPTTDLAAGLRKFVKWY 439
+++ +L ++ G++P T L GLR W
Sbjct: 275 GPQGVRGRNSDNTLLKEELGWEPNTPLEEGLRITYFWI 312
|
This subgroup of NDP-sugar epimerase/dehydratases are extended SDRs; they have the characteristic active site tetrad, and an NAD-binding motif: TGXXGXX[AG], which is a close match to the canonical NAD-binding motif. Members include Arabidopsis thaliana GDP-mannose-3',5'-epimerase (GME) which catalyzes the epimerization of two positions of GDP-alpha-D-mannose to form GDP-beta-L-galactose. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 328 |
| >gnl|CDD|187545 cd05234, UDP_G4E_2_SDR_e, UDP-glucose 4 epimerase, subgroup 2, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 111 bits (279), Expect = 2e-27
Identities = 91/320 (28%), Positives = 139/320 (43%), Gaps = 22/320 (6%)
Query: 121 VLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLN 180
+LVTG AGF+GSH L + G+ V+ +DN +S + + K F+ L+
Sbjct: 2 ILVTGGAGFIGSHLVDRLLEEGNEVVVVDNLSS---GRRENIEPEFENKAFRFVKRDLLD 58
Query: 181 DAPLLTKL-FDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPS 239
A + K D V HLAA VR +P + N+ N+LE ++ +
Sbjct: 59 TADKVAKKDGDT-----VFHLAANPDVRLGATDPDIDLEENVLATYNVLEAMRANGVK-R 112
Query: 240 IVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIYGLALTGLRFFT 299
IV+ASSS+VYG +P E P S+Y A+K A E + Y H++G RF
Sbjct: 113 IVFASSSTVYGEAKVIPTPE-DYPPLPISVYGASKLAAEALISAYAHLFGFQAWIFRFAN 171
Query: 300 VYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGATGSGGKK 359
+ GP + Y F K ++V D + + Y+ D CV A +K
Sbjct: 172 IVGPRSTHGVIYDFINKLKRNPNELEVL---GDGRQRKSYLYVSD----CVDAMLLAWEK 224
Query: 360 RGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRN--GDVPYTHANVSLAY 417
+ ++NLGN + V + I+ L K + R GDVPY ++
Sbjct: 225 STEG-VNIFNLGNDDTISVNEIAEIVIEELGLKPRFKYSGGDRGWKGDVPYMRLDIEKL- 282
Query: 418 KDFGYKPTTDLAAGLRKFVK 437
K G+KP + +RK V+
Sbjct: 283 KALGWKPRYNSEEAVRKTVR 302
|
UDP-glucose 4 epimerase (aka UDP-galactose-4-epimerase), is a homodimeric extended SDR. It catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. This subgroup is comprised of archaeal and bacterial proteins, and has the characteristic active site tetrad and NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 305 |
| >gnl|CDD|200431 TIGR04180, EDH_00030, NAD dependent epimerase/dehydratase, LLPSF_EDH_00030 family | Back alignment and domain information |
|---|
Score = 110 bits (278), Expect = 2e-27
Identities = 88/319 (27%), Positives = 142/319 (44%), Gaps = 34/319 (10%)
Query: 121 VLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNS-----YYDPSLKRARQKLLQKHQVFIV 175
VLVTGA GF+GSH AL ++G V +NS + D S + K + +V
Sbjct: 1 VLVTGADGFIGSHLVEALVRQGYEVRAFVLYNSFNSWGWLDTSPPEVKDK------IEVV 54
Query: 176 EGDLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVN 235
GD+ D + K V HLAA + Y+ P SYV +N+ G +N+L+ + +
Sbjct: 55 TGDIRDPDSVRKAMKGC--DVVFHLAALIAIPYSYIAPDSYVDTNVTGTLNVLQAARDLG 112
Query: 236 PQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIYGLALTGL 295
+ +V S+S VYG VP E H Q S Y+A+K +++A ++ + +T +
Sbjct: 113 VE-KVVHTSTSEVYGTAQYVPIDEKHPL-QGQSPYSASKIGADQLALSFYRSFNTPVTII 170
Query: 296 RFFTVYGPWGRPDMAYFFFT--KDILQGK-TIDVYKTQDDREVARDFTYIDDVVKGCVGA 352
R F YGP R T I GK I + RDF Y+ D V+G + A
Sbjct: 171 RPFNTYGP--RQSARAVIPTIITQIASGKRRIKLGSLSP----TRDFNYVTDTVRGFI-A 223
Query: 353 TGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAK----KHVIRMPRNGDVPY 408
K G V N+G+ + +G V ++ ++ ++ + + +R P +V
Sbjct: 224 IAESDKTVG----EVINIGSNFEISIGDTVKLIAEIMGSEVEIETDEERLR-PEKSEVER 278
Query: 409 THANVSLAYKDFGYKPTTD 427
+ S + G++P
Sbjct: 279 LWCDNSKIKELTGWQPKYS 297
|
This clade within the NAD dependent epimerase/dehydratase superfamily (pfam01370) is characterized by inclusion of its members within a cassette of seven distinctive enzymes. These include four genes homologous to the elements of the neuraminic (sialic) acid biosynthesis cluster (NeuABCD), an aminotransferase and a nucleotidyltransferase in addition to the epimerase/dehydratase. Together it is very likely that these enzymes direct the biosynthesis of a nine-carbon sugar analagous to CMP-neuraminic acid. These seven genes form the core of the cassette, although they are often accompanied by additional genes that may further modify the product sugar. Although this cassette is widely distributed in bacteria, the family nomenclature arises from the instance in Leptospira interrogans serovar Lai, str. 56601, where it appears as the 30th gene in the 91-gene lipopolysaccharide biosynthesis cluster. Length = 297 |
| >gnl|CDD|187660 cd08957, WbmH_like_SDR_e, Bordetella bronchiseptica enzymes WbmH and WbmG-like, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 106 bits (265), Expect = 2e-25
Identities = 89/334 (26%), Positives = 139/334 (41%), Gaps = 46/334 (13%)
Query: 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQ-VFIVEG 177
M VL+TG AG +GSH L +RG V+ +DNF + R++ L H + +VEG
Sbjct: 1 MKVLITGGAGQIGSHLIEHLLERGHQVVVIDNFAT--------GRREHLPDHPNLTVVEG 52
Query: 178 DLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYV---ASNIAGFVNLLEVCKSV 234
+ D L+ KLF V+H AA A ++P + +N+ G N+++ K
Sbjct: 53 SIADKALVDKLFGDFKPDAVVHTAA------AYKDPDDWYEDTLTNVVGGANVVQAAKKA 106
Query: 235 NPQPSIVWASSSSVYGLN-TQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIYGLALT 293
+ +++ ++ YGL Q P H P S YA +K AGE Y + G+
Sbjct: 107 GVK-RLIYFQTALCYGLKPMQQPIRLDHPRAPPGSSYAISKTAGEY----YLELSGVDFV 161
Query: 294 GLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDD----VVKGC 349
R V GP F+ + + GK V T+ RDF ++ D V K
Sbjct: 162 TFRLANVTGPRNVIGPLPTFY-QRLKAGKKCFVTDTR------RDFVFVKDLARVVDKAL 214
Query: 350 VGATGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSI-LENLLNTKAKKHVIRMPRNGDVPY 408
G G G Y+ + V + L +E L + + DVP
Sbjct: 215 DGIRGHG----------AYHFSSGEDVSIKELFDAVVEALDLPLRPEVEVVELGPDDVPS 264
Query: 409 THANVSLAYKDFGYKPTTDLAAGLRKFVKWYVSY 442
+ S ++DFG+K T L+ + + WY +
Sbjct: 265 ILLDPSRTFQDFGWKEFTPLSETVSAALAWYDKH 298
|
Bordetella bronchiseptica enzymes WbmH and WbmG, and related proteins. This subgroup exhibits the active site tetrad and NAD-binding motif of the extended SDR family. It has been proposed that the active site in Bordetella WbmG and WbmH cannot function as an epimerase, and that it plays a role in O-antigen synthesis pathway from UDP-2,3-diacetamido-2,3-dideoxy-l-galacturonic acid. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 307 |
| >gnl|CDD|233775 TIGR02197, heptose_epim, ADP-L-glycero-D-manno-heptose-6-epimerase | Back alignment and domain information |
|---|
Score = 105 bits (264), Expect = 3e-25
Identities = 82/342 (23%), Positives = 138/342 (40%), Gaps = 49/342 (14%)
Query: 121 VLVTGAAGFVGSHCSLALKKRG-DGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDL 179
++VTG AGF+GS+ AL +RG +L +DN + L + +
Sbjct: 1 IIVTGGAGFIGSNLVKALNERGITDILVVDNLRD-------GHKFLNLADLV---IADYI 50
Query: 180 NDAPLLTKL--FDVVPFTHVLHLAAQAGV-----RYAMQNPQSYVASNIAGFVNLLEVCK 232
+ L +L + H A + Y M+N N LL+ C
Sbjct: 51 DKEDFLDRLEKGAFGKIEAIFHQGACSDTTETDGEYMMEN-------NYQYSKRLLDWC- 102
Query: 233 SVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIYGLA- 291
++ASS++ YG + + F E ++P ++Y +K ++ L+
Sbjct: 103 -AEKGIPFIYASSAATYG-DGEAGFREGRELERPLNVYGYSKFLFDQYVRRRVLPEALSA 160
Query: 292 -LTGLRFFTVYGPW----GR-PDMAYFFFTKDILQGKTIDVYKTQD---DREVARDFTYI 342
+ GLR+F VYGP G+ +A+ F + I G + ++K+ + D E RDF Y+
Sbjct: 161 QVVGLRYFNVYGPREYHKGKMASVAFHLFNQ-IKAGGNVKLFKSSEGFKDGEQLRDFVYV 219
Query: 343 DDVVKGCVGATGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPR 402
DVV + +G G ++NLG L + L K I MP
Sbjct: 220 KDVVDVNLWLLENG--VSG-----IFNLGTGRARSFNDLADAVFKALGKDEKIEYIPMPE 272
Query: 403 NGDVPY---THANVSLAYKDFGYKPTTDLAAGLRKFVKWYVS 441
Y T A+++ Y P T L G++ +V+W ++
Sbjct: 273 ALRGRYQYFTQADITKLRAAGYYGPFTTLEEGVKDYVQWLLA 314
|
This family consists of examples of ADP-L-glycero-D-mannoheptose-6-epimerase, an enzyme involved in biosynthesis of the inner core of lipopolysaccharide (LPS) for Gram-negative bacteria. This enzyme is homologous to UDP-glucose 4-epimerase (TIGR01179) and belongs to the NAD dependent epimerase/dehydratase family (pfam01370) [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 314 |
| >gnl|CDD|130249 TIGR01181, dTDP_gluc_dehyt, dTDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Score = 103 bits (260), Expect = 7e-25
Identities = 91/327 (27%), Positives = 144/327 (44%), Gaps = 24/327 (7%)
Query: 120 TVLVTGAAGFVGSH-CSLALKKRGD-GVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEG 177
+LVTG AGF+GS+ L + D V+ LD +Y L + V+G
Sbjct: 1 RILVTGGAGFIGSNFVRYILNEHPDAEVIVLDKL-TY--AGNLENLADLEDNPRYRFVKG 57
Query: 178 DLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQ 237
D+ D L+++LF V+H AA++ V ++ P +++ +N+ G LLE + +
Sbjct: 58 DIGDRELVSRLFTEHQPDAVVHFAAESHVDRSISGPAAFIETNVVGTYTLLEAVRKYWHE 117
Query: 238 PSIVWASSSSVYG-LNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIYGLALTGLR 296
S+ VYG L F+E+ P+S Y+A+K A + + Y+ YGL R
Sbjct: 118 FRFHHISTDEVYGDLEKGDAFTETTPL-APSSPYSASKAASDHLVRAYHRTYGLPALITR 176
Query: 297 FFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKG--CVGATG 354
YGP+ P+ + L GK + VY D ++V RD+ Y++D + V G
Sbjct: 177 CSNNYGPYQFPEKLIPLMITNALAGKPLPVYG--DGQQV-RDWLYVEDHCRAIYLVLEKG 233
Query: 355 SGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAK--KHVIRMPRNGDVPYTHAN 412
G YN+G + +V + LL HV P + D Y +
Sbjct: 234 RVG--------ETYNIGGGNERTNLEVVETILELLGKDEDLITHVEDRPGH-DRRYA-ID 283
Query: 413 VSLAYKDFGYKPTTDLAAGLRKFVKWY 439
S ++ G+ P GLRK V+WY
Sbjct: 284 ASKIKRELGWAPKYTFEEGLRKTVQWY 310
|
This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 317 |
| >gnl|CDD|177883 PLN02240, PLN02240, UDP-glucose 4-epimerase | Back alignment and domain information |
|---|
Score = 101 bits (254), Expect = 9e-24
Identities = 102/361 (28%), Positives = 153/361 (42%), Gaps = 72/361 (19%)
Query: 120 TVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQ---VFIVE 176
T+LVTG AG++GSH L L G V+ +DN ++ + +L+R + +L VF +
Sbjct: 7 TILVTGGAGYIGSHTVLQLLLAGYKVVVIDNLDNSSEEALRRVK-ELAGDLGDNLVFH-K 64
Query: 177 GDLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEV-----C 231
DL D L K+F F V+H A V ++ P Y +N+ G +NLLEV C
Sbjct: 65 VDLRDKEALEKVFASTRFDAVIHFAGLKAVGESVAKPLLYYDNNLVGTINLLEVMAKHGC 124
Query: 232 KSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHI---Y 288
K +V++SS++VYG +VP +E + Y TK EEI + +
Sbjct: 125 K------KLVFSSSATVYGQPEEVPCTEEFPL-SATNPYGRTKLFIEEICRDIHASDPEW 177
Query: 289 GLALTGLRFFTVYG----------PWGRPD--MAYFFFTKDILQ---GK----TI--DVY 327
+ L LR+F G P G P+ M Y + Q G+ T+ + Y
Sbjct: 178 KIIL--LRYFNPVGAHPSGRIGEDPKGIPNNLMPY------VQQVAVGRRPELTVFGNDY 229
Query: 328 KTQDDREVARDFTYIDDVVKGCVGA------TGSGGKKRGPAQLRVYNLGNTSPVPVGRL 381
T+D V RD+ ++ D+ G + A G YNLG V +
Sbjct: 230 PTKDGTGV-RDYIHVMDLADGHIAALRKLFTDPDIG-------CEAYNLGTGKGTSVLEM 281
Query: 382 VSILENLLNTKA--KK--HVIRMPRNGDVPYTHANVSLAYKDFGYKPTTDLAAGLRKFVK 437
V+ E KA KK + R GD +A+ A K+ G+K + R
Sbjct: 282 VAAFE-----KASGKKIPLKLAPRRPGDAEEVYASTEKAEKELGWKAKYGIDEMCRDQWN 336
Query: 438 W 438
W
Sbjct: 337 W 337
|
Length = 352 |
| >gnl|CDD|182639 PRK10675, PRK10675, UDP-galactose-4-epimerase; Provisional | Back alignment and domain information |
|---|
Score = 100 bits (251), Expect = 2e-23
Identities = 96/338 (28%), Positives = 151/338 (44%), Gaps = 48/338 (14%)
Query: 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNF-NSYYDPSLKRARQKLLQKHQVFIVEG 177
M VLVTG +G++GSH + L + G V+ LDN NS S+ ++L KH F VEG
Sbjct: 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVVILDNLCNS--KRSVLPVIERLGGKHPTF-VEG 57
Query: 178 DLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQ 237
D+ + LLT++ V+H A V ++Q P Y +N+ G + L+ ++ N +
Sbjct: 58 DIRNEALLTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVK 117
Query: 238 PSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHI---YGLALTG 294
+++++SS++VYG ++P+ ES T P S Y +K E+I + +AL
Sbjct: 118 -NLIFSSSATVYGDQPKIPYVESFPTGTPQSPYGKSKLMVEQILTDLQKAQPDWSIAL-- 174
Query: 295 LRFFTVYG----------PWGRPD--MAYF------------FFTKDILQGKTIDVYKTQ 330
LR+F G P G P+ M Y F D Y T+
Sbjct: 175 LRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGND---------YPTE 225
Query: 331 DDREVARDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLN 390
D V RD+ ++ D+ G V A K + +YNLG V +V+
Sbjct: 226 DGTGV-RDYIHVMDLADGHVAAM---EKLANKPGVHIYNLGAGVGSSVLDVVNAFSKACG 281
Query: 391 TKAKKHVIRMPRNGDVPYTHANVSLAYKDFGYKPTTDL 428
K + R GD+P A+ S A ++ ++ T L
Sbjct: 282 -KPVNYHFAPRREGDLPAYWADASKADRELNWRVTRTL 318
|
Length = 338 |
| >gnl|CDD|187559 cd05248, ADP_GME_SDR_e, ADP-L-glycero-D-mannoheptose 6-epimerase (GME), extended (e) SDRs | Back alignment and domain information |
|---|
Score = 95.1 bits (237), Expect = 1e-21
Identities = 89/344 (25%), Positives = 142/344 (41%), Gaps = 53/344 (15%)
Query: 120 TVLVTGAAGFVGSHCSLALKKRG-DGVLGLDNFNSYYDPSLKRARQKL---LQKHQVF-- 173
++VTG AGF+GS+ AL +RG +L +DN ++ + K+ + K
Sbjct: 1 MIIVTGGAGFIGSNLVKALNERGITDILVVDNLSN-GEKFKNLVGLKIADYIDKDDFKDW 59
Query: 174 IVEGDLNDAPLLTKLFDVVPFTHVLHLAA-----QAGVRYAMQNPQSYVASNIAGFVNLL 228
+ +GD N + + H A + +Y M N N LL
Sbjct: 60 VRKGDENF------KIEA-----IFHQGACSDTTETDGKYMMDN-------NYQYTKELL 101
Query: 229 EVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQ--PASLYAATKKAGEEIAHTYNH 286
C + ++ASS++VYG N + F+E T P ++Y +K ++ A +
Sbjct: 102 HYCLEKKIR--FIYASSAAVYG-NGSLGFAEDIETPNLRPLNVYGYSKLLFDQWARRHGK 158
Query: 287 IYGLALTGLRFFTVYGP--WGRPDMA--YFFFTKDILQGKTIDVYKTQD---DREVARDF 339
+ GLR+F VYGP + + MA F I G+ + ++K+ D D E RDF
Sbjct: 159 EVLSQVVGLRYFNVYGPREYHKGRMASVVFHLFNQIKAGEKVKLFKSSDGYADGEQLRDF 218
Query: 340 TYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIR 399
Y+ DVVK + G ++N+G L S L + K I
Sbjct: 219 VYVKDVVKVNLFFL-ENPSVSG-----IFNVGTGRARSFNDLASATFKALGKEVKIEYID 272
Query: 400 MP---RNGDVPYTHANVSLAYKDFGY-KPTTDLAAGLRKFVKWY 439
P R +T A++S + GY K L G++ +VK Y
Sbjct: 273 FPEDLRGKYQSFTEADIS-KLRAAGYTKEFHSLEEGVKDYVKNY 315
|
This subgroup contains ADP-L-glycero-D-mannoheptose 6-epimerase, an extended SDR, which catalyzes the NAD-dependent interconversion of ADP-D-glycero-D-mannoheptose and ADP-L-glycero-D-mannoheptose. This subgroup has the canonical active site tetrad and NAD(P)-binding motif. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 317 |
| >gnl|CDD|187562 cd05252, CDP_GD_SDR_e, CDP-D-glucose 4,6-dehydratase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 94.3 bits (235), Expect = 3e-21
Identities = 80/354 (22%), Positives = 127/354 (35%), Gaps = 51/354 (14%)
Query: 117 NGMTVLVTGAAGFVGSHCSLALKKRGDGVLG--LDNFNSYYDPSLKRARQKLLQKHQVFI 174
G VLVTG GF GS SL L++ G V+G LD + P+L L
Sbjct: 3 QGKRVLVTGHTGFKGSWLSLWLQELGAKVIGYSLDPPTN---PNLFEL--ANLDNKISST 57
Query: 175 VEGDLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSV 234
GD+ D L + V HLAAQ VR + ++P +N+ G VNLLE +
Sbjct: 58 R-GDIRDLNALREAIREYEPEIVFHLAAQPLVRLSYKDPVETFETNVMGTVNLLEAIRET 116
Query: 235 NPQPSIVWASSSSVYGLNTQV-PFSESHRTDQPASLYAATKKAGEEIAHTYNHIY----- 288
++V +S Y + E+ Y+++K E I +Y + +
Sbjct: 117 GSVKAVVNVTSDKCYENKEWGWGYREND-PLGGHDPYSSSKGCAELIISSYRNSFFNPEN 175
Query: 289 ----GLALTGLRFFTVYG----PWGR--PDMAYFFFTKDILQGKTIDVYKTQDDREVARD 338
G+A+ R V G R PD + G+ + + R
Sbjct: 176 YGKHGIAIASARAGNVIGGGDWAEDRIVPDC-----IRAFEAGERVIIRNPN----AIRP 226
Query: 339 FTYIDDVVKGCV---GATGSGGKKRGPAQLRVYNLGNTSP--VPVGRLVSILENLLNTKA 393
+ ++ + + G + G++ A +N G V V LV + A
Sbjct: 227 WQHVLEPLSGYLLLAEKLYERGEEYAEA----WNFGPDDEDAVTVLELVEAMARYWGEDA 282
Query: 394 KKHVIRMPRNGDVPY--THANV--SLAYKDFGYKPTTDLAAGLRKFVKWYVSYY 443
+ P+ + S A G++P +L L V WY +
Sbjct: 283 RWD----LDGNSHPHEANLLKLDCSKAKTMLGWRPRWNLEETLEFTVAWYKEWL 332
|
This subgroup contains CDP-D-glucose 4,6-dehydratase, an extended SDR, which catalyzes the conversion of CDP-D-glucose to CDP-4-keto-6-deoxy-D-glucose. This subgroup has the characteristic active site tetrad and NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 336 |
| >gnl|CDD|178298 PLN02695, PLN02695, GDP-D-mannose-3',5'-epimerase | Back alignment and domain information |
|---|
Score = 86.0 bits (213), Expect = 2e-18
Identities = 90/348 (25%), Positives = 144/348 (41%), Gaps = 43/348 (12%)
Query: 117 NGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVE 176
+ + +TGA GF+ SH + LK G ++ D K+ +F E
Sbjct: 20 EKLRICITGAGGFIASHIARRLKAEGHYIIASD---------WKKNEH---MSEDMFCHE 67
Query: 177 GDLNDAPLLTKLFDVVP-FTHVLHLAAQAGVRYAMQNPQSYVA-SNIAGFVNLLEVCKSV 234
L D ++ V HV +LAA G +Q+ S + +N N+LE + +
Sbjct: 68 FHLVDLRVMENCLKVTKGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEAAR-I 126
Query: 235 NPQPSIVWASSSSVYG----LNTQVPFSESHR-TDQPASLYAATKKAGEEIAHTYNHIYG 289
N +ASS+ +Y L T V ES +P Y K A EE+ Y +G
Sbjct: 127 NGVKRFFYASSACIYPEFKQLETNVSLKESDAWPAEPQDAYGLEKLATEELCKHYTKDFG 186
Query: 290 LALTGLRFFTVYGP---W--GRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDD 344
+ RF +YGP W GR F K + +++ D + R FT+ID+
Sbjct: 187 IECRIGRFHNIYGPFGTWKGGREKAPAAFCRKALTSTDEFEMW---GDGKQTRSFTFIDE 243
Query: 345 VVKGCVGATGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRNG 404
V+G + T S R P N+G+ V + + I + N K I P
Sbjct: 244 CVEGVLRLTKS--DFREPV-----NIGSDEMVSMNEMAEIALSFENKKLPIKHIPGPEG- 295
Query: 405 DVPYTHANVSLAYKDFGYKPTTDLAAGLRKFVKWYVSYYGIQPRVKKE 452
V +++ +L + G+ PT L GLR ++Y+ I+ +++KE
Sbjct: 296 -VRGRNSDNTLIKEKLGWAPTMRLKDGLR------ITYFWIKEQIEKE 336
|
Length = 370 |
| >gnl|CDD|215146 PLN02260, PLN02260, probable rhamnose biosynthetic enzyme | Back alignment and domain information |
|---|
Score = 87.1 bits (216), Expect = 4e-18
Identities = 94/330 (28%), Positives = 139/330 (42%), Gaps = 26/330 (7%)
Query: 121 VLVTGAAGFVGSHCSLALKKRGDG--VLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGD 178
+L+TGAAGF+ SH + L + ++ LD + Y +LK + F V+GD
Sbjct: 9 ILITGAAGFIASHVANRLIRNYPDYKIVVLDKLD--YCSNLKNLNPSKSSPNFKF-VKGD 65
Query: 179 LNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQP 238
+ A L+ L ++H AAQ V + N + +NI G LLE CK
Sbjct: 66 IASADLVNYLLITEGIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIR 125
Query: 239 SIVWASSSSVYGLNTQVPFSESHRTDQ--PASLYAATKKAGEEIAHTYNHIYGLALTGLR 296
+ S+ VYG + +H Q P + Y+ATK E + Y YGL + R
Sbjct: 126 RFIHVSTDEVYGETDEDADVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLPVITTR 185
Query: 297 FFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKG--CVGATG 354
VYGP P+ F +QGK + ++ D R + Y +DV + V G
Sbjct: 186 GNNVYGPNQFPEKLIPKFILLAMQGKPLPIH---GDGSNVRSYLYCEDVAEAFEVVLHKG 242
Query: 355 SGGKKRGPAQLRVYNLGNT---SPVPVGRLVSILENLLNTKAKKHVIRMPRNGDVPYTHA 411
G VYN+G + V + + L L K+ K V P N D Y
Sbjct: 243 EVG--------HVYNIGTKKERRVIDVAKDICKLFGLDPEKSIKFVENRPFN-DQRYFLD 293
Query: 412 NVSLAYKDFGYKPTTDLAAGLRKFVKWYVS 441
+ L K G++ T GL+K ++WY S
Sbjct: 294 DQKL--KKLGWQERTSWEEGLKKTMEWYTS 321
|
Length = 668 |
| >gnl|CDD|224014 COG1089, Gmd, GDP-D-mannose dehydratase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 84.3 bits (209), Expect = 8e-18
Identities = 60/238 (25%), Positives = 102/238 (42%), Gaps = 16/238 (6%)
Query: 120 TVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKH-QVFIVEGD 178
L+TG G GS+ + L ++G V G+ +S ++ + ++ + GD
Sbjct: 4 VALITGITGQDGSYLAELLLEKGYEVHGIKRRSSSFNTPRIHLYEDPHLNDPRLHLHYGD 63
Query: 179 LNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQP 238
L D+ L ++ + V + +LAAQ+ V + + P+ + G + LLE + + +
Sbjct: 64 LTDSSNLLRILEEVQPDEIYNLAAQSHVGVSFEQPEYTADVDAIGTLRLLEAIRILGEKK 123
Query: 239 S-IVWASSSSVYGLNTQVPFSESHRTD-QPASLYAATKKAGEEIAHTYNHIYGL-ALTGL 295
+ AS+S +YGL ++P E+ T P S YA K I Y YGL A G
Sbjct: 124 TRFYQASTSELYGLVQEIPQKET--TPFYPRSPYAVAKLYAYWITVNYRESYGLFACNG- 180
Query: 296 RFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQD-----DREVARDFTYIDDVVKG 348
F P R + F T+ I + QD + + RD+ + D V+
Sbjct: 181 ILFNHESP-LRGET---FVTRKITRAVARIKLGLQDKLYLGNLDAKRDWGHAKDYVEA 234
|
Length = 345 |
| >gnl|CDD|165812 PLN02166, PLN02166, dTDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Score = 85.1 bits (210), Expect = 8e-18
Identities = 110/446 (24%), Positives = 182/446 (40%), Gaps = 60/446 (13%)
Query: 3 SPPDTSKTIKLERYNSYLRRLHVTKMLHSSSKLFFRATILIALVLILFFTLNHPPLSDNT 62
S P + KT+K R S R ++ L +L F IL+ +++ F + P LS
Sbjct: 23 SSPYSPKTLKHPR--SLPRSIN---YLFKEQRLLF---ILVGILIGSTFFILQPSLS--- 71
Query: 63 GESGDNNSNNKNNPRNLFTHQHSLLSSSFFSSSFSTGGAEWEKQVRHSATPRRPNG---- 118
+ P + S S + + + T R P G
Sbjct: 72 ----------RLGPAE--STSLITRSVSIAVTDSPPSSSTFNSSGGGGRTGRVPVGIGRK 119
Query: 119 -MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEG 177
+ ++VTG AGFVGSH L RGD V+ +DNF + K L + ++
Sbjct: 120 RLRIVVTGGAGFVGSHLVDKLIGRGDEVIVIDNFFT----GRKENLVHLFGNPRFELIRH 175
Query: 178 DLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQ 237
D+ + P+L ++ + HLA A + NP + +N+ G +N+L + K V +
Sbjct: 176 DVVE-PILLEV------DQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAR 228
Query: 238 PSIVWASSSSVYGLNTQVPFSESHRTD-QPA---SLYAATKKAGEEIAHTYNHIYGLALT 293
+ S+S VYG + P E++ + P S Y K+ E +A Y+ G+ +
Sbjct: 229 --FLLTSTSEVYGDPLEHPQKETYWGNVNPIGERSCYDEGKRTAETLAMDYHRGAGVEVR 286
Query: 294 GLRFFTVYGPWGRPDMAYFF--FTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVG 351
R F YGP D F ++ + + VY D + R F Y+ D+V G V
Sbjct: 287 IARIFNTYGPRMCLDDGRVVSNFVAQTIRKQPMTVY---GDGKQTRSFQYVSDLVDGLVA 343
Query: 352 ATGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRNGDVPYTHA 411
G+ GP +NLGN + L +++ +++ A + P D P+
Sbjct: 344 LM--EGEHVGP-----FNLGNPGEFTMLELAEVVKETIDSSAT--IEFKPNTADDPHKRK 394
Query: 412 -NVSLAYKDFGYKPTTDLAAGLRKFV 436
++S A + ++P L GL V
Sbjct: 395 PDISKAKELLNWEPKISLREGLPLMV 420
|
Length = 436 |
| >gnl|CDD|177856 PLN02206, PLN02206, UDP-glucuronate decarboxylase | Back alignment and domain information |
|---|
Score = 84.6 bits (209), Expect = 1e-17
Identities = 95/363 (26%), Positives = 158/363 (43%), Gaps = 59/363 (16%)
Query: 118 GMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNF---------NSYYDPSLKRARQKLLQ 168
G+ V+VTG AGFVGSH L RGD V+ +DNF + + +P+ + R +++
Sbjct: 119 GLRVVVTGGAGFVGSHLVDRLMARGDSVIVVDNFFTGRKENVMHHFSNPNFELIRHDVVE 178
Query: 169 KHQVFIVEGDLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLL 228
P+L ++ + HLA A + NP + +N+ G +N+L
Sbjct: 179 --------------PILLEV------DQIYHLACPASPVHYKFNPVKTIKTNVVGTLNML 218
Query: 229 EVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTD-QPA---SLYAATKKAGEEIAHTY 284
+ K V + + S+S VYG Q P E++ + P S Y K+ E + Y
Sbjct: 219 GLAKRVGAR--FLLTSTSEVYGDPLQHPQVETYWGNVNPIGVRSCYDEGKRTAETLTMDY 276
Query: 285 NHIYGLALTGLRFFTVYGPWGRPDMAYFF--FTKDILQGKTIDVYKTQDDREVARDFTYI 342
+ + + R F YGP D F L+ + + VY D + R F ++
Sbjct: 277 HRGANVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVY---GDGKQTRSFQFV 333
Query: 343 DDVVKGCVGATGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPR 402
D+V+G + G+ GP +NLGN + L +++ ++ AK + P
Sbjct: 334 SDLVEGLMRLM--EGEHVGP-----FNLGNPGEFTMLELAKVVQETIDPNAK--IEFRPN 384
Query: 403 NGDVPYTHA-NVSLAYKDFGYKPTTDLAAGLRKFVKWYVSYYGIQPRV---KKENGFSTT 458
D P+ +++ A + G++P L GL VK + + RV +KE +T
Sbjct: 385 TEDDPHKRKPDITKAKELLGWEPKVSLRQGLPLMVKDF------RQRVFGDQKEGSSTTA 438
Query: 459 TST 461
TST
Sbjct: 439 TST 441
|
Length = 442 |
| >gnl|CDD|187550 cd05239, GDP_FS_SDR_e, GDP-fucose synthetase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 82.6 bits (205), Expect = 2e-17
Identities = 81/349 (23%), Positives = 124/349 (35%), Gaps = 79/349 (22%)
Query: 120 TVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDL 179
+LVTG G VGS L +RG + + R ++L DL
Sbjct: 1 KILVTGHRGLVGSAIVRVLARRGYENV------------VFRTSKEL-----------DL 37
Query: 180 NDAPLLTKLFDVVPFTHVLHLAAQAGVRYA-MQNPQSYVASNIAGFVNLLEVCKSVNPQP 238
D + F+ +V+HLAA+ G A M P ++ N+ N++ +
Sbjct: 38 TDQEAVRAFFEKEKPDYVIHLAAKVGGIVANMTYPADFLRDNLLINDNVIHAAHRFGVK- 96
Query: 239 SIVWASSSSVYGLNTQVPFSES-------HRTDQPASLYAATKKAGEEIAHTYNHIYGLA 291
+V+ SS +Y P ES T++ YA K+AG ++ Y YG
Sbjct: 97 KLVFLGSSCIYPDLAPQPIDESDLLTGPPEPTNEG---YAIAKRAGLKLCEAYRKQYGCD 153
Query: 292 LTGLRFFTVYGPWGR---------PDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYI 342
+ +YGP P + F + GK + V+ R+F Y
Sbjct: 154 YISVMPTNLYGPHDNFDPENSHVIPALIRKFHEAKLRGGKEVTVW---GSGTPRREFLYS 210
Query: 343 DDVVKGCVGATGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAK----KHVI 398
DD+ + V L Y+ V G +SI E L A+ K I
Sbjct: 211 DDLARAIVFL------------LENYDEPIIVNVGSGVEISIRE-LAEAIAEVVGFKGEI 257
Query: 399 R--------MPRNGDVPYTHANVSLAYKDFGYKPTTDLAAGLRKFVKWY 439
PR +VS + G+ P T L G+R+ +WY
Sbjct: 258 VFDTSKPDGQPRKL------LDVSKL-RALGWFPFTPLEQGIRETYEWY 299
|
GDP-fucose synthetase (aka 3, 5-epimerase-4-reductase) acts in the NADP-dependent synthesis of GDP-fucose from GDP-mannose. Two activities have been proposed for the same active site: epimerization and reduction. Proteins in this subgroup are extended SDRs, which have a characteristic active site tetrad and an NADP-binding motif, [AT]GXXGXXG, that is a close match to the archetypical form. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 300 |
| >gnl|CDD|187552 cd05241, 3b-HSD-like_SDR_e, 3beta-hydroxysteroid dehydrogenases (3b-HSD)-like, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 76.7 bits (189), Expect = 2e-15
Identities = 73/354 (20%), Positives = 119/354 (33%), Gaps = 57/354 (16%)
Query: 120 TVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSY---YDPSLKRARQKLLQKHQVFIVE 176
+VLVTG +GF G L L+ +Y +D + Q + ++
Sbjct: 1 SVLVTGGSGFFGERLVKQL---------LERGGTYVRSFDIAPPGEALSAWQHPNIEFLK 51
Query: 177 GDLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNP 236
GD+ D + + V H AA Y N+ G N+L+ C+
Sbjct: 52 GDITDRNDVEQALSGA--DCVFHTAAIVP---LAGPRDLYWEVNVGGTQNVLDACQRCGV 106
Query: 237 QPSIVWASSSSVYGLNTQVPFSESH---RTDQPASLYAATKKAGEEIAHTYNHIYGLALT 293
Q V+ SSSSV Q + + +YA TK E I N L
Sbjct: 107 Q-KFVYTSSSSVIF-GGQNIHNGDETLPYPPLDSDMYAETKAIAEIIVLEANGRDDLLTC 164
Query: 294 GLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGAT 353
LR ++GP G + F + +G V+ DFTY+ ++ + A
Sbjct: 165 ALRPAGIFGP-GDQGLVPILF-EWAEKGLVKFVF---GRGNNLVDFTYVHNLAHAHILAA 219
Query: 354 GSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPR----------- 402
+ K + Y + + P + L+ + L ++ IR+
Sbjct: 220 -AALVKGKTISGQTYFITDAEPHNMFELLRPVWKALGFGSR-PKIRLSGPLAYCAALLSE 277
Query: 403 ---------NGDVPYTHA--------NVSLAYKDFGYKPTTDLAAGLRKFVKWY 439
P+ +++ A KD GY P GL + + WY
Sbjct: 278 LVSFMLGPYFVFSPFYVRALVTPMYFSIAKAQKDLGYAPRYSNEEGLIETLNWY 331
|
Extended SDR family domains belonging to this subgroup have the characteristic active site tetrad and a fairly well-conserved NAD(P)-binding motif. 3b-HSD catalyzes the NAD-dependent conversion of various steroids, such as pregnenolone to progesterone, or androstenediol to testosterone. This subgroup includes an unusual bifunctional 3b-HSD/C-4 decarboxylase from Arabidopsis thaliana, and Saccharomyces cerevisiae ERG26, a 3b-HSD/C-4 decarboxylase, involved in the synthesis of ergosterol, the major sterol of yeast. It also includes human 3 beta-HSD/HSD3B1 and C(27) 3beta-HSD/ [3beta-hydroxy-delta(5)-C(27)-steroid oxidoreductase; HSD3B7]. C(27) 3beta-HSD/HSD3B7 is a membrane-bound enzyme of the endoplasmic reticulum, that catalyzes the isomerization and oxidation of 7alpha-hydroxylated sterol intermediates, an early step in bile acid biosynthesis. Mutations in the human NSDHL (NAD(P)H steroid dehydrogenase-like protein) cause CHILD syndrome (congenital hemidysplasia with ichthyosiform nevus and limb defects), an X-linked dominant, male-lethal trait. Mutations in the human gene encoding C(27) 3beta-HSD underlie a rare autosomal recessive form of neonatal cholestasis. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid sythase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 331 |
| >gnl|CDD|187549 cd05238, Gne_like_SDR_e, Escherichia coli Gne (a nucleoside-diphosphate-sugar 4-epimerase)-like, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 75.5 bits (186), Expect = 4e-15
Identities = 61/204 (29%), Positives = 82/204 (40%), Gaps = 17/204 (8%)
Query: 119 MTVLVTGAAGFVGSHCSLALKKRG--DGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVE 176
M VL+TGA+GFVG + L + ++ +D + R Q +
Sbjct: 1 MKVLITGASGFVGQRLAERLLSDVPNERLILIDVVSPKAPSGAPRVTQ----------IA 50
Query: 177 GDLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNP 236
GDL L+ L + P V HLAA A + N+ G NLLE + P
Sbjct: 51 GDLAVPALIEALANGRPDV-VFHLAAIVS-GGAEADFDLGYRVNVDGTRNLLEALRKNGP 108
Query: 237 QPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEE-IAHTYNHIYGLALTGL 295
+P V+ SS +VYGL P H PAS Y A K E + + T L
Sbjct: 109 KPRFVFTSSLAVYGLPLPNP-VTDHTALDPASSYGAQKAMCELLLNDYSRRGFVDGRT-L 166
Query: 296 RFFTVYGPWGRPDMAYFFFTKDIL 319
R TV GRP+ A F I+
Sbjct: 167 RLPTVCVRPGRPNKAASAFASTII 190
|
Nucleoside-diphosphate-sugar 4-epimerase has the characteristic active site tetrad and NAD-binding motif of the extended SDR, and is related to more specifically defined epimerases such as UDP-glucose 4 epimerase (aka UDP-galactose-4-epimerase), which catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. This subgroup includes Escherichia coli 055:H7 Gne, a UDP-GlcNAc 4-epimerase, essential for O55 antigen synthesis. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 305 |
| >gnl|CDD|182313 PRK10217, PRK10217, dTDP-glucose 4,6-dehydratase; Provisional | Back alignment and domain information |
|---|
Score = 74.7 bits (183), Expect = 1e-14
Identities = 83/347 (23%), Positives = 150/347 (43%), Gaps = 41/347 (11%)
Query: 120 TVLVTGAAGFVGSH-CSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEG- 177
+L+TG AGF+GS + + D V+ +D +Y + A + + + F E
Sbjct: 3 KILITGGAGFIGSALVRYIINETSDAVVVVDKL-TYAGNLMSLAP---VAQSERFAFEKV 58
Query: 178 DLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQ 237
D+ D L ++F V+HLAA++ V ++ P +++ +NI G LLE ++
Sbjct: 59 DICDRAELARVFTEHQPDCVMHLAAESHVDRSIDGPAAFIETNIVGTYTLLEAARAYWNA 118
Query: 238 PSIVWASSSSVYGLNTQVPFSESHRTDQ---------PASLYAATKKAGEEIAHTYNHIY 288
+ S+ + ++T + + H TD P+S Y+A+K + + + + Y
Sbjct: 119 LTEDKKSAFRFHHISTDEVYGDLHSTDDFFTETTPYAPSSPYSASKASSDHLVRAWLRTY 178
Query: 289 GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKG 348
GL YGP+ P+ + L GK + VY + + RD+ Y++D +
Sbjct: 179 GLPTLITNCSNNYGPYHFPEKLIPLMILNALAGKPLPVY---GNGQQIRDWLYVEDHARA 235
Query: 349 --CVGATGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKA--KKHVIRMPRN- 403
CV TG G+ YN+G + +V + LL A K + R+
Sbjct: 236 LYCVATTGKVGE--------TYNIGGHNERKNLDVVETICELLEELAPNKPQGVAHYRDL 287
Query: 404 ---------GDVPYTHANVSLAYKDFGYKPTTDLAAGLRKFVKWYVS 441
D+ Y + S ++ G+ P +G+RK V+WY++
Sbjct: 288 ITFVADRPGHDLRYA-IDASKIARELGWLPQETFESGMRKTVQWYLA 333
|
Length = 355 |
| >gnl|CDD|187539 cd05228, AR_FR_like_1_SDR_e, uncharacterized subgroup of aldehyde reductase and flavonoid reductase related proteins, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 73.9 bits (182), Expect = 2e-14
Identities = 74/313 (23%), Positives = 105/313 (33%), Gaps = 48/313 (15%)
Query: 121 VLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQK--LLQKHQVFIVEGD 178
+LVTGA GF+GS+ AL +G V L R+ LL V +VEGD
Sbjct: 1 ILVTGATGFLGSNLVRALLAQGYRVRA-----------LVRSGSDAVLLDGLPVEVVEGD 49
Query: 179 LNDAPLLTKLF---DVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVN 235
L DA L D V HLAA ++ + +N+ G N+L+
Sbjct: 50 LTDAASLAAAMKGCDR-----VFHLAAF--TSLWAKDRKELYRTNVEGTRNVLDAALEAG 102
Query: 236 PQPSIVWASSSSVYGLNTQVPFSE--SHRTDQPASLYAATKKAGEEIAHTYNHIYGLALT 293
+ +V SS + G E + Y +K E GL +
Sbjct: 103 VR-RVVHTSSIAALGGPPDGRIDETTPWNERPFPNDYYRSKLLAELEVLEAAA-EGLDVV 160
Query: 294 GLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGAT 353
+ V+GP + D L GK F + DV +G + A
Sbjct: 161 IVNPSAVFGPGDEGPTSTGLDVLDYLNGKLPAYPPG------GTSFVDVRDVAEGHIAAM 214
Query: 354 GSGGKKRGPAQLRVYNLG--NTSPVPVGRLVSILENLLNTKAKKHVIRMPRNGDVPYTHA 411
G +RG Y LG N S +L L + K + I + A
Sbjct: 215 EKG--RRG----ERYILGGENLS---FKQLFETLAEITGVKPPRRTIPPW----LLKAVA 261
Query: 412 NVSLAYKDFGYKP 424
+S KP
Sbjct: 262 ALSELKARLTGKP 274
|
This subgroup contains proteins of unknown function related to aldehyde reductase and flavonoid reductase of the extended SDR-type. Aldehyde reductase I (aka carbonyl reductase) is an NADP-binding SDR; it has an NADP-binding motif consensus that is slightly different from the canonical SDR form and lacks the Asn of the extended SDR active site tetrad. Aldehyde reductase I catalyzes the NADP-dependent reduction of ethyl 4-chloro-3-oxobutanoate to ethyl (R)-4-chloro-3-hydroxybutanoate. The related flavonoid reductases act in the NADP-dependent reduction of flavonoids, ketone-containing plant secondary metabolites. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 318 |
| >gnl|CDD|187551 cd05240, UDP_G4E_3_SDR_e, UDP-glucose 4 epimerase (G4E), subgroup 3, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 71.2 bits (175), Expect = 1e-13
Identities = 78/336 (23%), Positives = 123/336 (36%), Gaps = 55/336 (16%)
Query: 121 VLVTGAAGFVGSHCSLALKK--RGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGD 178
+LVTGAAG +G + L R GV GLD R+ +V V D
Sbjct: 1 ILVTGAAGGLGRLLARRLAASPRVIGVDGLD------------RRRPPGSPPKVEYVRLD 48
Query: 179 LNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQP 238
+ D P +F V+HLA + ++ N+ G N+L+ C + P
Sbjct: 49 IRD-PAAADVFREREADAVVHLAF---ILDPPRDGAERHRINVDGTQNVLDACAAA-GVP 103
Query: 239 SIVWASSSSVYG--LNTQVPFSESHRTD-QPASLYAATKKAGEEIAHTYNHIY-GLALTG 294
+V SS +VYG + P +E P Y+ K E++ + + L +T
Sbjct: 104 RVVVTSSVAVYGAHPDNPAPLTEDAPLRGSPEFAYSRDKAEVEQLLAEFRRRHPELNVTV 163
Query: 295 LRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGATG 354
LR T+ GP R F + L + F + DDV + V A
Sbjct: 164 LRPATILGPGTRNTTRD-FLSPRRLPVP--------GGFDPPFQFLHEDDVARALVLAVR 214
Query: 355 SGGKKRGPAQLRVYNLGNTSPVPV-----------GRLVSILENLLNTKAKKHVIRMPRN 403
+G G ++N+ PVP+ L S L L + + +P
Sbjct: 215 AG--ATG-----IFNVAGDGPVPLSLVLALLGRRPVPLPSPLPAALAAARRLGLRPLPP- 266
Query: 404 GDVPYTH----ANVSLAYKDFGYKPTTDLAAGLRKF 435
+ + + + A + G++P A LR F
Sbjct: 267 EQLDFLQYPPVMDTTRARVELGWQPKHTSAEVLRDF 302
|
Members of this bacterial subgroup are identified as possible sugar epimerases, such as UDP-glucose 4 epimerase. However, while the NAD(P)-binding motif is fairly well conserved, not all members retain the canonical active site tetrad of the extended SDRs. UDP-glucose 4 epimerase (aka UDP-galactose-4-epimerase), is a homodimeric extended SDR. It catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 306 |
| >gnl|CDD|233427 TIGR01472, gmd, GDP-mannose 4,6-dehydratase | Back alignment and domain information |
|---|
Score = 68.3 bits (167), Expect = 2e-12
Identities = 55/184 (29%), Positives = 92/184 (50%), Gaps = 11/184 (5%)
Query: 122 LVTGAAGFVGSHCSLALKKRGDGVLGL----DNFNSYYDPSLKRARQKLLQKHQVFIVEG 177
L+TG G GS+ + L ++G V GL +FN+ + + K ++ + G
Sbjct: 4 LITGITGQDGSYLAEFLLEKGYEVHGLIRRSSSFNTQRIEHIYEDPHNV-NKARMKLHYG 62
Query: 178 DLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIA-GFVNLLEVCKSVNP 236
DL D+ L ++ D + T + +LAAQ+ V+ + + P+ Y A G + LLE +++
Sbjct: 63 DLTDSSNLRRIIDEIKPTEIYNLAAQSHVKVSFEIPE-YTADVDGIGTLRLLEAVRTLGL 121
Query: 237 QPSIVW--ASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIYGL-ALT 293
S+ + AS+S +YG ++P +E+ P S YAA K I Y YGL A+
Sbjct: 122 IKSVKFYQASTSELYGKVQEIPQNET-TPFYPRSPYAAAKLYAHWITVNYREAYGLFAVN 180
Query: 294 GLRF 297
G+ F
Sbjct: 181 GILF 184
|
Alternate name: GDP-D-mannose dehydratase. This enzyme converts GDP-mannose to GDP-4-dehydro-6-deoxy-D-mannose, the first of three steps for the conversion of GDP-mannose to GDP-fucose in animals, plants, and bacteria. In bacteria, GDP-L-fucose acts as a precursor of surface antigens such as the extracellular polysaccharide colanic acid of E. coli. Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116) [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 343 |
| >gnl|CDD|187565 cd05255, SQD1_like_SDR_e, UDP_sulfoquinovose_synthase (Arabidopsis thaliana SQD1 and related proteins), extended (e) SDRs | Back alignment and domain information |
|---|
Score = 67.8 bits (166), Expect = 2e-12
Identities = 50/213 (23%), Positives = 73/213 (34%), Gaps = 29/213 (13%)
Query: 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYY--------------DPSLKRARQ 164
M VL+ G G+ G +L L KRG V +DN +
Sbjct: 1 MKVLILGGDGYCGWPTALHLSKRGHEVCIVDNLVRRRIDVELGLESLTPIASIHERLRAW 60
Query: 165 KLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVAS---NI 221
K L + GD D L +L V+H A Q Y+M + + + N+
Sbjct: 61 KELTGKTIEFYVGDACDYEFLAELLASHEPDAVVHFAEQRSAPYSMIDREHANYTQHNNV 120
Query: 222 AGFVNLLEVCKSVNPQPSIVWASSSSVYGLNT----QVPFSESH--RTD------QPASL 269
G +NLL K +P +V + YG + + H R D Q S
Sbjct: 121 IGTLNLLFAIKEFDPDCHLVKLGTMGEYGTPNIDIPEGYITIEHNGRRDTLPYPKQAGSW 180
Query: 270 YAATKKAGEEIAHTYNHIYGLALTGLRFFTVYG 302
Y +K +G+ +T L VYG
Sbjct: 181 YHLSKVHDSHNIMFACKAWGIRITDLNQGVVYG 213
|
Arabidopsis thaliana UDP-sulfoquinovose-synthase ( SQD1), an extended SDR, catalyzes the transfer of SO(3)(-) to UDP-glucose in the biosynthesis of plant sulfolipids. Members of this subgroup share the conserved SDR catalytic residues, and a partial match to the characteristic extended-SDR NAD-binding motif. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 382 |
| >gnl|CDD|187673 cd09813, 3b-HSD-NSDHL-like_SDR_e, human NSDHL (NAD(P)H steroid dehydrogenase-like protein)-like, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 67.0 bits (164), Expect = 3e-12
Identities = 73/361 (20%), Positives = 117/361 (32%), Gaps = 67/361 (18%)
Query: 120 TVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFN-SYYDPSLKRARQKLLQKH--QVFIVE 176
+ LV G +GF+G H L L N +D R +L +V
Sbjct: 1 SCLVVGGSGFLGRHLVEQL-------LRRGNPTVHVFD---IRPTFELDPSSSGRVQFHT 50
Query: 177 GDLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNP 236
GDL D L K F+ V H A+ N Y N+ G N++E C+
Sbjct: 51 GDLTDPQDLEKAFNEKGPNVVFHTASPD----HGSNDDLYYKVNVQGTRNVIEACRKCGV 106
Query: 237 QPSIVWASSSSVYGLNTQVPFSES-HRTDQPASLYAATKKAGEE-IAHTYNHIYGLALTG 294
+ + +S+S V+ + ES D+ Y TK E+ + + GL
Sbjct: 107 KKLVYTSSASVVFNGQDIINGDESLPYPDKHQDAYNETKALAEKLVLKANDPESGLLTCA 166
Query: 295 LRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQD------DREVARDFTYIDDVVKG 348
LR ++GP G + + K D DFTY+++V
Sbjct: 167 LRPAGIFGP-GDRQLVPGL----------LKAAKNGKTKFQIGDGNNLFDFTYVENVAHA 215
Query: 349 CVGATG--SGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPR---- 402
+ A + + N P+ + L + I++PR
Sbjct: 216 HILAADALLSSSHAETVAGEAFFITNDEPIYFWDFARAIWEGLGYER-PPSIKLPRPVAL 274
Query: 403 ----------------NGDVPYTHA--------NVSLAYKDFGYKPTTDLAAGLRKFVKW 438
P+ A N+ A K GY P L G+ + ++W
Sbjct: 275 YLASLLEWTCKVLGKEPTFTPFRVALLCSTRYFNIEKAKKRLGYTPVVTLEEGIERTLQW 334
Query: 439 Y 439
+
Sbjct: 335 F 335
|
This subgroup includes human NSDHL and related proteins. These proteins have the characteristic active site tetrad of extended SDRs, and also have a close match to their NAD(P)-binding motif. Human NSDHL is a 3beta-hydroxysteroid dehydrogenase (3 beta-HSD) which functions in the cholesterol biosynthetic pathway. 3 beta-HSD catalyzes the oxidative conversion of delta 5-3 beta-hydroxysteroids to the delta 4-3-keto configuration; this activity is essential for the biosynthesis of all classes of hormonal steroids. Mutations in the gene encoding NSDHL cause CHILD syndrome (congenital hemidysplasia with ichthyosiform nevus and limb defects), an X-linked dominant, male-lethal trait. This subgroup also includes an unusual bifunctional [3beta-hydroxysteroid dehydrogenase (3b-HSD)/C-4 decarboxylase from Arabidopsis thaliana, and Saccharomyces cerevisiae ERG26, a 3b-HSD/C-4 decarboxylase, involved in the synthesis of ergosterol, the major sterol of yeast. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid sythase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 335 |
| >gnl|CDD|187571 cd05261, CAPF_like_SDR_e, capsular polysaccharide assembling protein (CAPF) like, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 64.3 bits (157), Expect = 1e-11
Identities = 62/272 (22%), Positives = 96/272 (35%), Gaps = 63/272 (23%)
Query: 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGD 178
M +L+TGA GF+G + LK++ D +F + +
Sbjct: 1 MKILITGAKGFIGKNLIARLKEQKD--------------------------DDIFFYDRE 34
Query: 179 LNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVN-LLEVCKSVNPQ 237
+D L F + HLA GV ++ + + N+ G LL+ +
Sbjct: 35 -SDESELDDFLQGADF--IFHLA---GVNRP-KDEAEFESGNV-GLTERLLDALTRNGKK 86
Query: 238 PSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIYGLALTGLRF 297
P I+ +SS Q D P Y +K A EE+ Y G + R
Sbjct: 87 PPILLSSS-------IQAAL------DNP---YGKSKLAAEELLQEYARETGAPVYIYRL 130
Query: 298 FTVYGPWGRPDM--AYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGA-TG 354
V+G W RP+ A F +I + I + +D YIDDVV + G
Sbjct: 131 PNVFGKWCRPNYNSAVATFCYNIARDLPIQI----NDPAAELTLVYIDDVVDELIQLLEG 186
Query: 355 SGGKKRGPAQLRVYNLGNTSPVPVGRLVSILE 386
+ G Q+ V VG + +L
Sbjct: 187 APTYSGGFDQVL-----PVYKVTVGEIAELLY 213
|
This subgroup of extended SDRs, includes some members which have been identified as capsular polysaccharide assembling proteins, such as Staphylococcus aureus Cap5F which is involved in the biosynthesis of N-acetyl-l-fucosamine, a constituent of surface polysaccharide structures of S. aureus. This subgroup has the characteristic active site tetrad and NAD-binding motif of extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 248 |
| >gnl|CDD|178259 PLN02653, PLN02653, GDP-mannose 4,6-dehydratase | Back alignment and domain information |
|---|
Score = 64.4 bits (157), Expect = 3e-11
Identities = 65/195 (33%), Positives = 87/195 (44%), Gaps = 33/195 (16%)
Query: 122 LVTGAAGFVGSHCSLALKKRGDGVLGL----DNFNS------YYDPSLKRARQKLLQKHQ 171
L+TG G GS+ + L +G V G+ NFN+ Y DP +AR KL H
Sbjct: 10 LITGITGQDGSYLTEFLLSKGYEVHGIIRRSSNFNTQRLDHIYIDPHPNKARMKL---HY 66
Query: 172 VFIVEGDLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIA-GFVNLLEV 230
GDL+DA L + D + V +LAAQ+ V + + P Y A +A G + LLE
Sbjct: 67 -----GDLSDASSLRRWLDDIKPDEVYNLAAQSHVAVSFEMPD-YTADVVATGALRLLEA 120
Query: 231 CKSVNPQPSIV----WASSSSVYGLNTQVPFSES---HRTDQPASLYAATKKAGEEIAHT 283
+ + A SS +YG +T P SE+ H P S YA K A
Sbjct: 121 VRLHGQETGRQIKYYQAGSSEMYG-STPPPQSETTPFH----PRSPYAVAKVAAHWYTVN 175
Query: 284 YNHIYGL-ALTGLRF 297
Y YGL A G+ F
Sbjct: 176 YREAYGLFACNGILF 190
|
Length = 340 |
| >gnl|CDD|236649 PRK10084, PRK10084, dTDP-glucose 4,6 dehydratase; Provisional | Back alignment and domain information |
|---|
Score = 64.4 bits (157), Expect = 3e-11
Identities = 85/364 (23%), Positives = 151/364 (41%), Gaps = 69/364 (18%)
Query: 119 MTVLVTGAAGFVGS----HCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFI 174
M +LVTG AGF+GS H + D V+ +D Y +L+ + + ++
Sbjct: 1 MKILVTGGAGFIGSAVVRHI---INNTQDSVVNVDKLT--YAGNLESL--ADVSDSERYV 53
Query: 175 VEG-DLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKS 233
E D+ D L ++F V+HLAA++ V ++ P +++ +NI G LLE ++
Sbjct: 54 FEHADICDRAELDRIFAQHQPDAVMHLAAESHVDRSITGPAAFIETNIVGTYVLLEAARN 113
Query: 234 VNPQPSIVWA---------------SSSSVYG---------LNTQVPFSESHRTDQPASL 269
W+ S+ VYG + ++P P+S
Sbjct: 114 -------YWSALDEDKKNAFRFHHISTDEVYGDLPHPDEVENSEELPLFTETTAYAPSSP 166
Query: 270 YAATKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKT 329
Y+A+K + + + + YGL YGP+ P+ + L+GK + +Y
Sbjct: 167 YSASKASSDHLVRAWLRTYGLPTIVTNCSNNYGPYHFPEKLIPLVILNALEGKPLPIYGK 226
Query: 330 QDDREVARDFTYIDD--------VVKGCVGATGSGGKKRGPAQLRVYNLGNTSPVPVGRL 381
D RD+ Y++D V +G G T + G L V V +
Sbjct: 227 GDQ---IRDWLYVEDHARALYKVVTEGKAGETYNIGGHNEKKNLDV----------VLTI 273
Query: 382 VSILENLL--NTKAKKHVIRMP-RNG-DVPYTHANVSLAYKDFGYKPTTDLAAGLRKFVK 437
+L+ ++ T ++ + + R G D Y + S ++ G+KP +G+RK V+
Sbjct: 274 CDLLDEIVPKATSYREQITYVADRPGHDRRYA-IDASKISRELGWKPQETFESGIRKTVE 332
Query: 438 WYVS 441
WY++
Sbjct: 333 WYLA 336
|
Length = 352 |
| >gnl|CDD|233954 TIGR02622, CDP_4_6_dhtase, CDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Score = 61.9 bits (151), Expect = 2e-10
Identities = 45/134 (33%), Positives = 59/134 (44%), Gaps = 6/134 (4%)
Query: 117 NGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFI-V 175
G VLVTG GF GS SL L + G V G DP +LL +
Sbjct: 3 QGKKVLVTGHTGFKGSWLSLWLLELGAEVYGYS-----LDPPTSPNLFELLNLAKKIEDH 57
Query: 176 EGDLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVN 235
GD+ DA L K V HLAAQ VR + +P +N+ G VNLLE +++
Sbjct: 58 FGDIRDAAKLRKAIAEFKPEIVFHLAAQPLVRKSYADPLETFETNVMGTVNLLEAIRAIG 117
Query: 236 PQPSIVWASSSSVY 249
++V +S Y
Sbjct: 118 SVKAVVNVTSDKCY 131
|
Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 349 |
| >gnl|CDD|187548 cd05237, UDP_invert_4-6DH_SDR_e, UDP-Glcnac (UDP-linked N-acetylglucosamine) inverting 4,6-dehydratase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 59.9 bits (146), Expect = 5e-10
Identities = 68/304 (22%), Positives = 111/304 (36%), Gaps = 51/304 (16%)
Query: 118 GMTVLVTGAAGFVGSHCSLALKKRGDG---VLGLDNFNSYYDPSLKR--ARQKLLQKHQV 172
G T+LVTG AG +GS + K G V D + L R + K +
Sbjct: 2 GKTILVTGGAGSIGSELVRQILKFGPKKLIVFDRDENKLH---ELVRELRSRFPHDKLRF 58
Query: 173 FIVEGDLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCK 232
I GD+ D L + F V H AA V NP+ + +N+ G N+++
Sbjct: 59 II--GDVRDKERLRRAFKERGPDIVFHAAALKHVPSMEDNPEEAIKTNVLGTKNVIDAAI 116
Query: 233 SVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEI---AHTYNHIYG 289
+ + ++ +V P ++ ATK+ E++ + Y+
Sbjct: 117 ENGVEKFVCISTDKAVN----------------PVNVMGATKRVAEKLLLAKNEYSS--S 158
Query: 290 LALTGLRFFTVYGPWGR--PDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVK 347
+ +RF V G G P F K I +G + T D ++ R F I + V
Sbjct: 159 TKFSTVRFGNVLGSRGSVLP-----LFKKQIKKGGPL----TVTDPDMTRFFMTIPEAVD 209
Query: 348 GCVGATGSGGKKRGPAQLRVYNLGNTSPVPVGRL-VSILENLLNTKAKKHVIRM--PRNG 404
+ A G ++ L PV + L +++E L + I R G
Sbjct: 210 LVLQACILGDGG------GIFLLDMGPPVKILDLAEALIELLGYEPYEDIPIFFTGLRPG 263
Query: 405 DVPY 408
+ Y
Sbjct: 264 EKLY 267
|
UDP-Glcnac inverting 4,6-dehydratase was identified in Helicobacter pylori as the hexameric flaA1 gene product (FlaA1). FlaA1 is hexameric, possesses UDP-GlcNAc-inverting 4,6-dehydratase activity, and catalyzes the first step in the creation of a pseudaminic acid derivative in protein glycosylation. Although this subgroup has the NADP-binding motif characteristic of extended SDRs, its members tend to have a Met substituted for the active site Tyr found in most SDR families. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 287 |
| >gnl|CDD|187537 cd05226, SDR_e_a, Extended (e) and atypical (a) SDRs | Back alignment and domain information |
|---|
Score = 57.0 bits (138), Expect = 1e-09
Identities = 41/165 (24%), Positives = 65/165 (39%), Gaps = 24/165 (14%)
Query: 121 VLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLN 180
+L+ GA GF+G + L ++G V L N+ + V +VEGDL
Sbjct: 1 ILILGATGFIGRALARELLEQGHEVTLLVR-NTKRLSKEDQE--------PVAVVEGDLR 51
Query: 181 DAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSI 240
D L+ V V+HLA A ++ + + ++ G N+LE K
Sbjct: 52 DLDSLSDAVQGV--DVVIHLAG------APRDTRDFCEVDVEGTRNVLEAAK-EAGVKHF 102
Query: 241 VWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYN 285
++ SS YG + S P+S Y A K E + +
Sbjct: 103 IFISSLGAYG-DLHEETEPS-----PSSPYLAVKAKTEAVLREAS 141
|
Extended or atypical short-chain dehydrogenases/reductases (SDRs, aka tyrosine-dependent oxidoreductases) are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 176 |
| >gnl|CDD|187671 cd09811, 3b-HSD_HSDB1_like_SDR_e, human 3beta-HSD (hydroxysteroid dehydrogenase) and HSD3B1(delta 5-delta 4-isomerase)-like, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 59.1 bits (143), Expect = 1e-09
Identities = 46/164 (28%), Positives = 67/164 (40%), Gaps = 9/164 (5%)
Query: 122 LVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLND 181
LVTG GF+G H L +R + + + + + P L +K K V +EGD+ D
Sbjct: 3 LVTGGGGFLGQHIIRLLLERKEELKEIRVLDKAFGPELIEHFEKSQGKTYVTDIEGDIKD 62
Query: 182 APLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIV 241
L + V V+H AA V N + N+ G +LE C N +V
Sbjct: 63 LSFLFRACQGVSV--VIHTAAIVDVFG-PPNYEELEEVNVNGTQAVLEACVQNN-VKRLV 118
Query: 242 WASSSSVYGLNTQVPFSESHRTDQP-----ASLYAATKKAGEEI 280
+ SS V G N + + D P YA++K E I
Sbjct: 119 YTSSIEVAGPNFKGRPIFNGVEDTPYEDTSTPPYASSKLLAENI 162
|
This extended-SDR subgroup includes human 3 beta-HSD/HSD3B1 and C(27) 3beta-HSD/ [3beta-hydroxy-delta(5)-C(27)-steroid oxidoreductase; HSD3B7], and related proteins. These proteins have the characteristic active site tetrad and NAD(P)-binding motif of extended SDRs. 3 beta-HSD catalyzes the oxidative conversion of delta 5-3 beta-hydroxysteroids to the delta 4-3-keto configuration; this activity is essential for the biosynthesis of all classes of hormonal steroids. C(27) 3beta-HSD is a membrane-bound enzyme of the endoplasmic reticulum, it catalyzes the isomerization and oxidation of 7alpha-hydroxylated sterol intermediates, an early step in bile acid biosynthesis. Mutations in the human gene encoding C(27) 3beta-HSD underlie a rare autosomal recessive form of neonatal cholestasis. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid sythase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 354 |
| >gnl|CDD|187575 cd05265, SDR_a1, atypical (a) SDRs, subgroup 1 | Back alignment and domain information |
|---|
Score = 58.1 bits (141), Expect = 2e-09
Identities = 62/287 (21%), Positives = 96/287 (33%), Gaps = 57/287 (19%)
Query: 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGD 178
M +L+ G F+G L G V FN R R K V + GD
Sbjct: 1 MKILIIGGTRFIGKALVEELLAAGHDV---TVFN--------RGRTKPDLPEGVEHIVGD 49
Query: 179 LNDAPLLTKL-----FDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKS 233
ND L +L FDVV + +Y + L+ K
Sbjct: 50 RNDRDALEELLGGEDFDVV-----------------VDT-IAYTPRQVE---RALDAFKG 88
Query: 234 VNPQPSIVWASSSSVYGLNTQV-----PFSE-SHRTDQPASLYAATKKAGEEIAHTYNHI 287
Q ++ SS+SVY +V P E Y K+A E++
Sbjct: 89 RVKQ--YIFISSASVYLKPGRVITESTPLREPDAVGLSDPWDYGRGKRAAEDVLIEA--- 143
Query: 288 YGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVK 347
T +R +YGP +FF + + +G+ I V D F ++ D+ +
Sbjct: 144 AAFPYTIVRPPYIYGPGDYTGRLAYFFDR-LARGRPILV---PGDGHSLVQFIHVKDLAR 199
Query: 348 GCVGATGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAK 394
+GA G+ G +N+ V L+ L +A+
Sbjct: 200 ALLGAAGNPKAIGGI-----FNITGDEAVTWDELLEACAKALGKEAE 241
|
Atypical SDRs in this subgroup are poorly defined and have been identified putatively as isoflavones reductase, sugar dehydratase, mRNA binding protein etc. Atypical SDRs are distinct from classical SDRs. Members of this subgroup retain the canonical active site triad (though not the upstream Asn found in most SDRs) but have an unusual putative glycine-rich NAD(P)-binding motif, GGXXXXG, in the usual location. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 250 |
| >gnl|CDD|187564 cd05254, dTDP_HR_like_SDR_e, dTDP-6-deoxy-L-lyxo-4-hexulose reductase and related proteins, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 57.6 bits (140), Expect = 3e-09
Identities = 47/211 (22%), Positives = 78/211 (36%), Gaps = 29/211 (13%)
Query: 121 VLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLN 180
+L+TGA G +G LK+RG V+G RA L DL
Sbjct: 2 ILITGATGMLGRALVRLLKERGYEVIGTGR---------SRASLFKL----------DLT 42
Query: 181 DAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSI 240
D + + +++ AA V +P+ N+ NL K V + +
Sbjct: 43 DPDAVEEAIRDYKPDVIINCAAYTRVDKCESDPELAYRVNVLAPENLARAAKEVGAR--L 100
Query: 241 VWASSSSVY-GLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIYGLALTGLRFFT 299
+ S+ V+ G + P+ E + P ++Y +K GE N Y L LR
Sbjct: 101 IHISTDYVFDG--KKGPYKEEDAPN-PLNVYGKSKLLGEVAVLNANPRY---LI-LRTSW 153
Query: 300 VYGPWGRPDMAYFFFTKDILQGKTIDVYKTQ 330
+YG + + + + K ++V Q
Sbjct: 154 LYGELKNGENFVEWMLRLAAERKEVNVVHDQ 184
|
dTDP-6-deoxy-L-lyxo-4-hexulose reductase, an extended SDR, synthesizes dTDP-L-rhamnose from alpha-D-glucose-1-phosphate, providing the precursor of L-rhamnose, an essential cell wall component of many pathogenic bacteria. This subgroup has the characteristic active site tetrad and NADP-binding motif. This subgroup also contains human MAT2B, the regulatory subunit of methionine adenosyltransferase (MAT); MAT catalyzes S-adenosylmethionine synthesis. The human gene encoding MAT2B encodes two major splicing variants which are induced in human cell liver cancer and regulate HuR, an mRNA-binding protein which stabilizes the mRNA of several cyclins, to affect cell proliferation. Both MAT2B variants include this extended SDR domain. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 280 |
| >gnl|CDD|216283 pfam01073, 3Beta_HSD, 3-beta hydroxysteroid dehydrogenase/isomerase family | Back alignment and domain information |
|---|
Score = 56.6 bits (137), Expect = 7e-09
Identities = 61/273 (22%), Positives = 93/273 (34%), Gaps = 37/273 (13%)
Query: 122 LVTGAAGFVGSHCSLALKKRGDG--VLGLDNFNSYYDPSLKRARQKLLQKHQVF----IV 175
LVTG GF+G H L + G+ V D R +LL+ +
Sbjct: 1 LVTGGGGFLGRHIVRLLLREGELQEVRVFD----------LRFSPELLEDFSKLQVITYI 50
Query: 176 EGDLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVN 235
EGD+ D L + V+H AA V + + N+ G N+L+ C
Sbjct: 51 EGDVTDKQDLRRALQGSDV--VIHTAAIIDVF-GKAYRDTIMKVNVKGTQNVLDACVKAG 107
Query: 236 PQPSIVWASSSSVYGLNTQ-VPFSESH----RTDQPASLYAATKKAGEEIAHTYNHIY-- 288
+V+ SS V G N+ P Y +K E++ N
Sbjct: 108 -VRVLVYTSSMEVVGPNSYGQPIVNGDETTPYESTHQDPYPESKALAEKLVLKANGSTLK 166
Query: 289 --GLALT-GLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDV 345
G T LR ++G G P F F + K D+ V D Y+ +V
Sbjct: 167 NGGRLYTCALRPAGIFGE-GDP----FLFPFLVRLLKNGLAKFRTGDKNVLSDRVYVGNV 221
Query: 346 VKGCVGATGS--GGKKRGPAQLRVYNLGNTSPV 376
+ A + KK + Y + + +P
Sbjct: 222 AWAHILAARALQDPKKASSIAGQFYFISDDTPH 254
|
The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyzes the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones. Length = 280 |
| >gnl|CDD|187580 cd05272, TDH_SDR_e, L-threonine dehydrogenase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 54.2 bits (131), Expect = 4e-08
Identities = 43/184 (23%), Positives = 73/184 (39%), Gaps = 26/184 (14%)
Query: 121 VLVTGAAGFVGSHCSLALKKR--GDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGD 178
+L+TG G +GS + L+KR D V+ D K +L ++ D
Sbjct: 2 ILITGGLGQIGSELAKLLRKRYGKDNVIASD--------IRKPPAHVVLSGPFEYLDVLD 53
Query: 179 LNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQP 238
+ + T ++HLAA +NP N+ G N+LE+ + N
Sbjct: 54 FKSLEEIVVNHKI---TWIIHLAALLSAV-GEKNPPLAWDVNMNGLHNVLELAREHNL-- 107
Query: 239 SIVWASSSSVYGLNTQVPFSESHRTDQ-----PASLYAATKKAGEEIAHTYNHIYGLALT 293
I S+ +G P + + T P ++Y +K A E + Y+H +G+
Sbjct: 108 RIFVPSTIGAFG-----PTTPRNNTPDDTIQRPRTIYGVSKVAAELLGEYYHHKFGVDFR 162
Query: 294 GLRF 297
LR+
Sbjct: 163 SLRY 166
|
This subgroup contains members identified as L-threonine dehydrogenase (TDH). TDH catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. This group is distinct from TDHs that are members of the medium chain dehydrogenase/reductase family. This group has the NAD-binding motif and active site tetrad of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 308 |
| >gnl|CDD|163279 TIGR03466, HpnA, hopanoid-associated sugar epimerase | Back alignment and domain information |
|---|
Score = 51.2 bits (123), Expect = 4e-07
Identities = 39/111 (35%), Positives = 52/111 (46%), Gaps = 13/111 (11%)
Query: 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGD 178
M VLVTGA GFVGS L ++G+ V L + ++ L+ V IVEGD
Sbjct: 1 MKVLVTGATGFVGSAVVRLLLEQGEEVRVL---------VRPTSDRRNLEGLDVEIVEGD 51
Query: 179 LNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLE 229
L D L K V + H+AA R +P+ A+N+ G NLL
Sbjct: 52 LRDPASLRK--AVAGCRALFHVAAD--YRLWAPDPEEMYAANVEGTRNLLR 98
|
The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnA was assigned. Hopanoids are known to be components of the plasma membrane and to have polar sugar head groups in Z. mobilis and other species. Length = 328 |
| >gnl|CDD|224011 COG1086, COG1086, Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 50.7 bits (122), Expect = 1e-06
Identities = 55/243 (22%), Positives = 89/243 (36%), Gaps = 44/243 (18%)
Query: 117 NGMTVLVTGAAGFVGSHCSLALKKRGDG---VLGLDNFNSYYDPSLKRARQKLLQKHQ-- 171
G TVLVTG G +GS + K + D + Y +L +K
Sbjct: 249 TGKTVLVTGGGGSIGSELCRQILKFNPKEIILFSRDEYKLY------LIDMELREKFPEL 302
Query: 172 --VFIVEGDLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLE 229
F + GD+ D + + + V H AA V NP+ + +N+ G N+ E
Sbjct: 303 KLRFYI-GDVRDRDRVERAMEGHKVDIVFHAAALKHVPLVEYNPEEAIKTNVLGTENVAE 361
Query: 230 VCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIYG 289
+ ++ ++ +V P ++ ATK+ E++ N
Sbjct: 362 AAIKNGVKKFVLISTDKAVN----------------PTNVMGATKRLAEKLFQAANRNVS 405
Query: 290 LALT---GLRFFTVYGPWGR--PDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDD 344
T +RF V G G P F K I +G + V T D ++ R F I +
Sbjct: 406 GTGTRFCVVRFGNVLGSRGSVIP-----LFKKQIAEGGPLTV--T--DPDMTRFFMTIPE 456
Query: 345 VVK 347
V+
Sbjct: 457 AVQ 459
|
Length = 588 |
| >gnl|CDD|224016 COG1091, RfbD, dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 1e-06
Identities = 54/216 (25%), Positives = 82/216 (37%), Gaps = 42/216 (19%)
Query: 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGD 178
M +L+TGA G +G+ AL + V+ D RA E D
Sbjct: 1 MKILITGANGQLGTELRRALPGEFE-VIATD-----------RA-------------ELD 35
Query: 179 LNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQP 238
+ D + ++ V++ AA V A P+ A N G NL V +
Sbjct: 36 ITDPDAVLEVIRETRPDVVINAAAYTAVDKAESEPELAFAVNATGAENLARAAAEVGAR- 94
Query: 239 SIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEE--IAHTYNHIYGLALTGLR 296
+V S+ V+ P+ E+ + P ++Y +K AGEE A H+ LR
Sbjct: 95 -LVHISTDYVFDGEKGGPYKETDTPN-PLNVYGRSKLAGEEAVRAAGPRHLI------LR 146
Query: 297 FFTVYGPWGRPDMAYFFFT--KDILQGKTIDVYKTQ 330
VYG +G F T + +GK + V Q
Sbjct: 147 TSWVYGEYGNN----FVKTMLRLAKEGKELKVVDDQ 178
|
Length = 281 |
| >gnl|CDD|187536 cd05193, AR_like_SDR_e, aldehyde reductase, flavonoid reductase, and related proteins, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 49.5 bits (118), Expect = 2e-06
Identities = 45/194 (23%), Positives = 68/194 (35%), Gaps = 44/194 (22%)
Query: 121 VLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLN 180
VLVTGA+GFV SH L +RG V DPS K + DL+
Sbjct: 1 VLVTGASGFVASHVVEQLLERGYKVRAT-----VRDPS----------KVKKVNHLLDLD 45
Query: 181 DAPLLTKLFDVVPF------------THVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLL 228
P +L V H+A V ++ ++P + I G +N L
Sbjct: 46 AKPGRLELAVADLTDEQSFDEVIKGCAGVFHVATP--VSFSSKDPNEVIKPAIGGTLNAL 103
Query: 229 EVCKSVNPQPSIVWASSSSVYGLN----TQVPFSESHRTD--------QPASLYAATKKA 276
+ + V SS+ + + E + A +YAA+K
Sbjct: 104 KAAAAAKSVKRFVLTSSAGSVLIPKPNVEGIVLDEKSWNLEEFDSDPKKSAWVYAASKTL 163
Query: 277 GEEIAHTY---NHI 287
E+ A + N+I
Sbjct: 164 AEKAAWKFADENNI 177
|
This subgroup contains aldehyde reductase and flavonoid reductase of the extended SDR-type and related proteins. Proteins in this subgroup have a complete SDR-type active site tetrad and a close match to the canonical extended SDR NADP-binding motif. Aldehyde reductase I (aka carbonyl reductase) is an NADP-binding SDR; it catalyzes the NADP-dependent reduction of ethyl 4-chloro-3-oxobutanoate to ethyl (R)-4-chloro-3-hydroxybutanoate. The related flavonoid reductases act in the NADP-dependent reduction of flavonoids, ketone-containing plant secondary metabolites. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 295 |
| >gnl|CDD|224015 COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only] | Back alignment and domain information |
|---|
Score = 48.4 bits (116), Expect = 3e-06
Identities = 42/167 (25%), Positives = 65/167 (38%), Gaps = 26/167 (15%)
Query: 121 VLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLN 180
+L+TG G +G + L+K G V L +A Q L V + EG
Sbjct: 1 ILITGGTGLIGRALTARLRKGGHQVTILTR-------RPPKASQNLHP--NVTLWEG--- 48
Query: 181 DAPLLTKLFDVVPFTHVLHLAAQ--AGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQP 238
A LT D V++LA + A R+ + + S I L+E+ + +P
Sbjct: 49 LADALTLGIDA-----VINLAGEPIAERRWTEKQKEEIRQSRINTTEKLVELIAASETKP 103
Query: 239 SIVWASSSSV--YGLNTQVPFSESHRTDQPASLYAA-TKKAGEEIAH 282
V S+S+V YG + +E P + A + EE A
Sbjct: 104 K-VLISASAVGYYGHSGDRVVTE---ESPPGDDFLAQLCQDWEEEAL 146
|
Length = 297 |
| >gnl|CDD|215310 PLN02572, PLN02572, UDP-sulfoquinovose synthase | Back alignment and domain information |
|---|
Score = 49.0 bits (117), Expect = 3e-06
Identities = 63/256 (24%), Positives = 94/256 (36%), Gaps = 35/256 (13%)
Query: 82 HQHSLLSSSFFSSSFSTGGAEWEKQVRHSATPRRPN------GMTVLVTGAAGFVGSHCS 135
H S +SS +S S A+ V ATP P V+V G G+ G +
Sbjct: 5 HLLSTSTSSKAFTSASPASAQSTPAVTELATPSAPGSSSSSKKKKVMVIGGDGYCGWATA 64
Query: 136 LALKKRG--------------DGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLND 181
L L KRG D LGLD+ + R K + ++ + GD+ D
Sbjct: 65 LHLSKRGYEVAIVDNLCRRLFDHQLGLDSLTPIASIHERVRRWKEVSGKEIELYVGDICD 124
Query: 182 APLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYV---ASNIAGFVNLLEVCKSVNPQP 238
L++ F V+H Q Y+M + V +N+ G +N+L K P
Sbjct: 125 FEFLSEAFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAIKEFAPDC 184
Query: 239 SIVWASSSSVYGL-NTQVP-----FSESHRTD------QPASLYAATKKAGEEIAHTYNH 286
+V + YG N + + + RTD Q +S Y +K
Sbjct: 185 HLVKLGTMGEYGTPNIDIEEGYITITHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCK 244
Query: 287 IYGLALTGLRFFTVYG 302
+G+ T L VYG
Sbjct: 245 AWGIRATDLNQGVVYG 260
|
Length = 442 |
| >gnl|CDD|218026 pfam04321, RmlD_sub_bind, RmlD substrate binding domain | Back alignment and domain information |
|---|
Score = 48.0 bits (115), Expect = 4e-06
Identities = 52/188 (27%), Positives = 73/188 (38%), Gaps = 35/188 (18%)
Query: 121 VLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLN 180
+LVTGA G +G + L +RG V+ LD R +L DL
Sbjct: 1 ILVTGANGQLGRELTRLLAERGVEVVALD-------------RPEL-----------DLT 36
Query: 181 DAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSI 240
D + L V++ AA V A P+ A N G NL E C + +
Sbjct: 37 DPEAVAALVREARPDVVVNAAAYTAVDKAESEPELAYAVNALGPGNLAEACAARG--APL 94
Query: 241 VWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYN--HIYGLALTGLRFF 298
+ S+ V+ P+ E T P ++Y TK AGE+ N H+ LR
Sbjct: 95 IHISTDYVFDGAKGGPYREDDPTG-PLNVYGRTKLAGEQAVLAANPRHLI------LRTA 147
Query: 299 TVYGPWGR 306
VYG +G
Sbjct: 148 WVYGEYGN 155
|
L-rhamnose is a saccharide required for the virulence of some bacteria. Its precursor, dTDP-L-rhamnose, is synthesised by four different enzymes the final one of which is RmlD. The RmlD substrate binding domain is responsible for binding a sugar nucleotide. Length = 284 |
| >gnl|CDD|178326 PLN02725, PLN02725, GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 4e-06
Identities = 43/187 (22%), Positives = 70/187 (37%), Gaps = 29/187 (15%)
Query: 122 LVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLND 181
V G G VGS A+ ++ + LG N +L+ H+ E DL
Sbjct: 1 FVAGHRGLVGS----AIVRKLEA-LGFTNL--------------VLRTHK----ELDLTR 37
Query: 182 APLLTKLFDVVPFTHVLHLAAQAGVRYA-MQNPQSYVASNIAGFVNLLEVCKSVNPQPSI 240
+ F T+V+ AA+ G +A M P ++ N+ N+++ + +
Sbjct: 38 QADVEAFFAKEKPTYVILAAAKVGGIHANMTYPADFIRENLQIQTNVIDAAYRHGVK-KL 96
Query: 241 VWASSSSVYGLNTQVPFSESHRTDQPASL----YAATKKAGEEIAHTYNHIYGLALTGLR 296
++ SS +Y P E+ P YA K AG ++ Y YG
Sbjct: 97 LFLGSSCIYPKFAPQPIPETALLTGPPEPTNEWYAIAKIAGIKMCQAYRIQYGWDAISGM 156
Query: 297 FFTVYGP 303
+YGP
Sbjct: 157 PTNLYGP 163
|
Length = 306 |
| >gnl|CDD|183375 PRK11908, PRK11908, NAD-dependent epimerase/dehydratase family protein; Provisional | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 1e-05
Identities = 85/362 (23%), Positives = 128/362 (35%), Gaps = 69/362 (19%)
Query: 119 MTVLVTGAAGFVGSHCSLALKKRGD-GVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEG 177
VL+ G GF+G H S + + D V G+D + R EG
Sbjct: 2 KKVLILGVNGFIGHHLSKRILETTDWEVYGMDMQTDRLGDLVNHPRMHF--------FEG 53
Query: 178 DLNDA----PLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGF-----VNLL 228
D+ K DV +L L A A P +YV + F NL
Sbjct: 54 DITINKEWIEYHVKKCDV-----ILPLVAIA-------TPATYVKQPLRVFELDFEANLP 101
Query: 229 EVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRT------DQPASLYAATKKAGEEIAH 282
V +V +V+ S+S VYG+ F ++P +YA +K+ + +
Sbjct: 102 IVRSAVKYGKHLVFPSTSEVYGMCPDEEFDPEASPLVYGPINKPRWIYACSKQLMDRVIW 161
Query: 283 TYNHIYGLALTGLRFFTVYGPWGRPDMAYFF----------FTKDILQGKTIDVYKTQDD 332
Y GL T R F GP D Y F I++G+ I D
Sbjct: 162 AYGMEEGLNFTLFRPFNWIGP--GLDSIYTPKEGSSRVVTQFLGHIVRGEPI---SLVDG 216
Query: 333 REVARDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGN-TSPVPVGRLVSILENLLNT 391
R FT IDD + + + K G A ++YN+GN + V L + + L
Sbjct: 217 GSQKRAFTDIDDGIDALMKIIEN---KDGVASGKIYNIGNPKNNHSVRELANKMLELAAE 273
Query: 392 ------KAKKHVIRMPRNG--------DVPYTHANVSLAYKDFGYKPTTDLAAGLRKFVK 437
AKK + +G DV + ++ G+ P T + LR+ +
Sbjct: 274 YPEYAESAKKVKLVETTSGAYYGKGYQDVQNRVPKIDNTMQELGWAPKTTMDDALRRIFE 333
Query: 438 WY 439
Y
Sbjct: 334 AY 335
|
Length = 347 |
| >gnl|CDD|187538 cd05227, AR_SDR_e, aldehyde reductase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 2e-05
Identities = 42/178 (23%), Positives = 66/178 (37%), Gaps = 25/178 (14%)
Query: 120 TVLVTGAAGFVGSHCSLALKKRGDGVLG----LDNFNSYYDPSLKRARQKLLQKHQVFIV 175
VLVTGA GF+ SH L K G V G L LK + ++ V
Sbjct: 1 LVLVTGATGFIASHIVEQLLKAGYKVRGTVRSLSK-----SAKLKALLKAAGYNDRLEFV 55
Query: 176 EGDLNDAPLLTKLFDVVP-FTHVLHLAAQAGVRYAMQNPQ-SYVASNIAGFVNLLEVCKS 233
D AP + + +V+H+A+ + + + + + G +N+LE K+
Sbjct: 56 IVDDLTAP--NAWDEALKGVDYVIHVASP--FPFTGPDAEDDVIDPAVEGTLNVLEAAKA 111
Query: 234 VNPQPSIVWASS-SSVYGLN---TQVPFSESHRTD------QPASLYAATKKAGEEIA 281
+V SS ++V F+E D Y A+K E+ A
Sbjct: 112 AGSVKRVVLTSSVAAVGDPTAEDPGKVFTEEDWNDLTISKSNGLDAYIASKTLAEKAA 169
|
This subgroup contains aldehyde reductase of the extended SDR-type and related proteins. Aldehyde reductase I (aka carbonyl reductase) is an NADP-binding SDR; it has an NADP-binding motif consensus that is slightly different from the canonical SDR form and lacks the Asn of the extended SDR active site tetrad. Aldehyde reductase I catalyzes the NADP-dependent reduction of ethyl 4-chloro-3-oxobutanoate to ethyl (R)-4-chloro-3-hydroxybutanoate. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 301 |
| >gnl|CDD|187543 cd05232, UDP_G4E_4_SDR_e, UDP-glucose 4 epimerase, subgroup 4, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 6e-05
Identities = 52/196 (26%), Positives = 67/196 (34%), Gaps = 26/196 (13%)
Query: 120 TVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDL 179
VLVTGA GF+G L RG R + + + D+
Sbjct: 1 KVLVTGANGFIGRALVDKLLSRG-----------EEVRIAVRNAENAEPSVVLAEL-PDI 48
Query: 180 NDAPLLTKLFDVVPFTHVLHLAAQAGV-RYAMQNPQS-YVASNIAGFVNLLEVCKSVNPQ 237
+ L D V+HLAA+ V +P S Y N L +
Sbjct: 49 DSFTDLFLGVDA-----VVHLAARVHVMNDQGADPLSDYRKVNTELTRRLARAAARQGVK 103
Query: 238 PSIVWASSSSVYGLNTQ-VPFSESHRTDQPA--SLYAATKKAGEEIAHTYNHIYGLALTG 294
V+ SS V G T PF E TD PA Y +K E G+ +
Sbjct: 104 -RFVFLSSVKVNGEGTVGAPFDE---TDPPAPQDAYGRSKLEAERALLELGASDGMEVVI 159
Query: 295 LRFFTVYGPWGRPDMA 310
LR VYGP R + A
Sbjct: 160 LRPPMVYGPGVRGNFA 175
|
UDP-glucose 4 epimerase (aka UDP-galactose-4-epimerase), is a homodimeric extended SDR. It catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. This subgroup is comprised of bacterial proteins, and includes the Staphylococcus aureus capsular polysaccharide Cap5N, which may have a role in the synthesis of UDP-N-acetyl-d-fucosamine. This subgroup has the characteristic active site tetrad and NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 303 |
| >gnl|CDD|182998 PRK11150, rfaD, ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 6e-05
Identities = 59/243 (24%), Positives = 95/243 (39%), Gaps = 41/243 (16%)
Query: 121 VLVTGAAGFVGSHCSLALKKRG-DGVLGLDN------FNSYYDPSLKRARQKLLQKHQVF 173
++VTG AGF+GS+ AL +G +L +DN F + D + K +
Sbjct: 2 IIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTKFVNLVDLDIADYMDK--EDFLAQ 59
Query: 174 IVEGDLNDAPLLTKLFDVVPFTHVLHLAAQAGV-----RYAMQNPQSYVASNIAGFVNLL 228
I+ GD D + H A + +Y M N Y LL
Sbjct: 60 IMAGD-----------DFGDIEAIFHEGACSSTTEWDGKYMMDNNYQYSK-------ELL 101
Query: 229 EVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIY 288
C + + ++ASS++ YG T F E ++P ++Y +K +E
Sbjct: 102 HYC--LEREIPFLYASSAATYGGRTDD-FIEEREYEKPLNVYGYSKFLFDEYVRQILPEA 158
Query: 289 GLALTGLRFFTVYGP--WGRPDMAY--FFFTKDILQGKTIDVYKTQDDREVARDFTYIDD 344
+ G R+F VYGP + MA F + G+ +++ + RDF Y+ D
Sbjct: 159 NSQICGFRYFNVYGPREGHKGSMASVAFHLNNQLNNGENPKLFEGSE--NFKRDFVYVGD 216
Query: 345 VVK 347
V
Sbjct: 217 VAA 219
|
Length = 308 |
| >gnl|CDD|187553 cd05242, SDR_a8, atypical (a) SDRs, subgroup 8 | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 2e-04
Identities = 44/190 (23%), Positives = 70/190 (36%), Gaps = 25/190 (13%)
Query: 120 TVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDL 179
+++TG GF+G + L G V+ L R K +V +G
Sbjct: 1 KIVITGGTGFIGRALTRRLTAAGHEVV-----------VLSRRPGKAEGLAEVITWDGLS 49
Query: 180 NDAPLLTKLFDVVPFTHVLHLAAQ--AGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQ 237
L V++LA + A R+ N + ++S I L+E +
Sbjct: 50 LGPWEL------PGADAVINLAGEPIACRRWTEANKKEILSSRIESTRVLVEAIANAPAP 103
Query: 238 PSIVWASSSSV--YGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIYGLALTGL 295
P V S+S+V YG + +E+ + + A KA E+ A G + L
Sbjct: 104 PK-VLISASAVGYYGHSGDEVLTENSPSGKDFL--AEVCKAWEKAAQPA-SELGTRVVIL 159
Query: 296 RFFTVYGPWG 305
R V GP G
Sbjct: 160 RTGVVLGPDG 169
|
This subgroup contains atypical SDRs of unknown function. Proteins in this subgroup have a glycine-rich NAD(P)-binding motif consensus that resembles that of the extended SDRs, (GXXGXXG or GGXGXXG), but lacks the characteristic active site residues of the SDRs. A Cys often replaces the usual Lys of the YXXXK active site motif, while the upstream Ser is generally present and Arg replaces the usual Asn. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 296 |
| >gnl|CDD|233570 TIGR01777, yfcH, TIGR01777 family protein | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 3e-04
Identities = 45/190 (23%), Positives = 68/190 (35%), Gaps = 26/190 (13%)
Query: 121 VLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLN 180
+L+TG GF+G + L KRG V L R + EG
Sbjct: 1 ILITGGTGFIGRALTQRLTKRGHEVTIL-------------TRSPPPGANT--KWEGYKP 45
Query: 181 DAPLLTKLFDVVPFTHVLHLAAQ--AGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQP 238
A + V++LA + A R+ + Q S I L+E + Q
Sbjct: 46 WAGEDADSLE--GADAVINLAGEPIADKRWTEERKQEIRDSRIDTTRLLVEAIAA-AEQK 102
Query: 239 SIVWASSSSV--YGLNTQVPFSESHRTDQPASLYAA-TKKAGEEIAHTYNHIYGLALTGL 295
V+ S+S+V YG + ++E + A + EE A + G + L
Sbjct: 103 PKVFISASAVGYYGPSEDREYTEEDSP--AGDDFLAELCRDWEEAAQAAEDL-GTRVVLL 159
Query: 296 RFFTVYGPWG 305
R V GP G
Sbjct: 160 RTGIVLGPKG 169
|
This model represents a clade of proteins of unknown function including the E. coli yfcH protein [Hypothetical proteins, Conserved]. Length = 291 |
| >gnl|CDD|187573 cd05263, MupV_like_SDR_e, Pseudomonas fluorescens MupV-like, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 4e-04
Identities = 49/206 (23%), Positives = 76/206 (36%), Gaps = 36/206 (17%)
Query: 121 VLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVF----IVE 176
V VTG GF+G H L + G VL L SL A +++ + ++E
Sbjct: 1 VFVTGGTGFLGRHLVKRLLENGFKVLVLVR-----SESLGEAHERIEEAGLEADRVRVLE 55
Query: 177 GDLN------DAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNP-QSYVASNIAGFVNLLE 229
GDL A +L V HV+H AA Y Q P + +NI G ++LE
Sbjct: 56 GDLTQPNLGLSAAASRELAGKV--DHVIHCAAS----YDFQAPNEDAWRTNIDGTEHVLE 109
Query: 230 VCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQP-ASLYAATKKAGEEIAHTY---- 284
+ ++ Q S++ V G Q + Y +K E++
Sbjct: 110 LAARLDIQRFHY-VSTAYVAGNREGNIRETELNPGQNFKNPYEQSKAEAEQLVRAAATQI 168
Query: 285 -------NHIYGLALTGLRFFTVYGP 303
+ + G + TG R + G
Sbjct: 169 PLTVYRPSIVVGDSKTG-RIEKIDGL 193
|
This subgroup of extended SDR family domains have the characteristic active site tetrad and a well-conserved NAD(P)-binding motif. This subgroup is not well characterized, its members are annotated as having a variety of putative functions. One characterized member is Pseudomonas fluorescens MupV a protein involved in the biosynthesis of Mupirocin, a polyketide-derived antibiotic. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 293 |
| >gnl|CDD|187556 cd05245, SDR_a2, atypical (a) SDRs, subgroup 2 | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 8e-04
Identities = 26/103 (25%), Positives = 38/103 (36%), Gaps = 10/103 (9%)
Query: 121 VLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLN 180
VLVTGA G+VG L + G V L P +V +V GDL
Sbjct: 1 VLVTGATGYVGGRLVPRLLQEGHQVRALVR-----SP---EKLADRPWSERVTVVRGDLE 52
Query: 181 DAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAG 223
D L + + + L + +G + + + A N A
Sbjct: 53 DPESLRAALEGIDTAYYLVHSMGSGGDFEEADRR--AARNFAR 93
|
This subgroup contains atypical SDRs, one member is identified as Escherichia coli protein ybjT, function unknown. Atypical SDRs are distinct from classical SDRs. Members of this subgroup have a glycine-rich NAD(P)-binding motif consensus that generally matches the extended SDRs, TGXXGXXG, but lacks the characteristic active site residues of the SDRs. This subgroup has basic residues (HXXXR) in place of the active site motif YXXXK, these may have a catalytic role. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 293 |
| >gnl|CDD|132628 TIGR03589, PseB, UDP-N-acetylglucosamine 4,6-dehydratase | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 0.001
Identities = 53/202 (26%), Positives = 77/202 (38%), Gaps = 54/202 (26%)
Query: 117 NGMTVLVTGAAGFVGSH-CSLALKKRGDGVLGLDNFNSYYDPSLKRA----RQKLLQ--- 168
N ++L+TG G G S L+ Y+P K+ R +L Q
Sbjct: 3 NNKSILITGGTGSFGKAFISRLLEN--------------YNP--KKIIIYSRDELKQWEM 46
Query: 169 -------KHQVFIVEGDLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNI 221
+ FI GD+ D LT+ V + V+H AA V A NP + +NI
Sbjct: 47 QQKFPAPCLRFFI--GDVRDKERLTRALRGVDY--VVHAAALKQVPAAEYNPFECIRTNI 102
Query: 222 AGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIA 281
G N+++ V L+T + P +LY ATK A +++
Sbjct: 103 NGAQNVIDAAIDNG---------VKRVVALSTD-------KAANPINLYGATKLASDKLF 146
Query: 282 HTYNHIYGLALTGLRFFTV-YG 302
N+I G G RF V YG
Sbjct: 147 VAANNISG--SKGTRFSVVRYG 166
|
This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family. Length = 324 |
| >gnl|CDD|217199 pfam02719, Polysacc_synt_2, Polysaccharide biosynthesis protein | Back alignment and domain information |
|---|
Score = 40.5 bits (96), Expect = 0.001
Identities = 55/238 (23%), Positives = 88/238 (36%), Gaps = 42/238 (17%)
Query: 121 VLVTGAAGFVGSH-CS--LALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEG 177
VLVTG G +GS C L + + D F Y +++ ++ ++ G
Sbjct: 1 VLVTGGGGSIGSELCRQILKFNPKKIILFSRDEFKLY---EIRQELRQEYNDPKLRFFIG 57
Query: 178 DLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQ 237
D+ D L + + V H AA V NP + +N+ G N+ E
Sbjct: 58 DVRDRERLERAMEQHGVDTVFHAAALKHVPLVEYNPMEAIKTNVLGTENVAEAAIE---- 113
Query: 238 PSIVWASSSSVYGLNTQVPFSESHRTDQ---PASLYAATKKAGEEI---AHTYNHIYGLA 291
G+ V S TD+ P ++ ATK+ E++ A+ +
Sbjct: 114 -----------NGVEKFVLIS----TDKAVNPTNVMGATKRLAEKLFQAANRESGSGKTR 158
Query: 292 LTGLRFFTVYGPWGR--PDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVK 347
+ +RF V G G P F K I G + V T ++ R F I + V+
Sbjct: 159 FSVVRFGNVLGSRGSVIP-----LFKKQIANGGPVTV--T--HPDMTRFFMTIPEAVQ 207
|
This is a family of diverse bacterial polysaccharide biosynthesis proteins including the CapD protein, WalL protein mannosyl-transferase and several putative epimerases (e.g. WbiI). Length = 280 |
| >gnl|CDD|178484 PLN02896, PLN02896, cinnamyl-alcohol dehydrogenase | Back alignment and domain information |
|---|
Score = 40.2 bits (94), Expect = 0.002
Identities = 54/214 (25%), Positives = 78/214 (36%), Gaps = 32/214 (14%)
Query: 114 RRPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPS-LKRARQKLLQKHQV 172
R T VTGA G++GS L +RG V + DP+ K + ++
Sbjct: 6 RESATGTYCVTGATGYIGSWLVKLLLQRGYTVHA-----TLRDPAKSLHLLSKWKEGDRL 60
Query: 173 FIVEGDLNDAPLLTKLFD--VVPFTHVLHLAA--QAGVRYAMQNPQSYVASNI-----AG 223
+ DL + FD V V H+AA + V N + YV S + G
Sbjct: 61 RLFRADLQE----EGSFDEAVKGCDGVFHVAASMEFDVSSDHNNIEEYVQSKVIDPAIKG 116
Query: 224 FVNLLEVCKSVNPQPSIVWASSSS-------------VYGLNTQVPFSESHRTDQPASLY 270
+N+L+ C +V+ SS S V Q P T +Y
Sbjct: 117 TLNVLKSCLKSKTVKRVVFTSSISTLTAKDSNGRWRAVVDETCQTPIDHVWNTKASGWVY 176
Query: 271 AATKKAGEEIAHTYNHIYGLALTGLRFFTVYGPW 304
+K EE A Y G+ L + TV GP+
Sbjct: 177 VLSKLLTEEAAFKYAKENGIDLVSVITTTVAGPF 210
|
Length = 353 |
| >gnl|CDD|200085 TIGR01214, rmlD, dTDP-4-dehydrorhamnose reductase | Back alignment and domain information |
|---|
Score = 38.9 bits (91), Expect = 0.004
Identities = 39/159 (24%), Positives = 59/159 (37%), Gaps = 27/159 (16%)
Query: 120 TVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDL 179
+L+TGA G +G L G V+ L R +L DL
Sbjct: 1 RILITGANGQLGRELVQQLSPEGRVVVALT-------------RSQL-----------DL 36
Query: 180 NDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPS 239
D L +L + V++ AA V A +P+ A N NL
Sbjct: 37 TDPEALERLLRAIRPDAVVNTAAYTDVDGAESDPEKAFAVNALAPQNLARAAARHG--AR 94
Query: 240 IVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGE 278
+V S+ V+ + P+ E T+ P ++Y +K AGE
Sbjct: 95 LVHISTDYVFDGEGKRPYREDDATN-PLNVYGQSKLAGE 132
|
This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 287 |
| >gnl|CDD|178567 PLN02986, PLN02986, cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Score = 38.8 bits (90), Expect = 0.004
Identities = 53/239 (22%), Positives = 97/239 (40%), Gaps = 30/239 (12%)
Query: 118 GMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLL----QKHQVF 173
G V VTGA+G++ S L RG V + D + ++ + LL K ++
Sbjct: 5 GKLVCVTGASGYIASWIVKLLLLRGYTVKA-----TVRDLTDRKKTEHLLALDGAKERLK 59
Query: 174 IVEGDLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQS-YVASNIAGFVNLLEVCK 232
+ + DL + + + V H A+ V + +++PQ+ + + G +N+L CK
Sbjct: 60 LFKADLLEESSFEQAIEGC--DAVFHTASP--VFFTVKDPQTELIDPALKGTINVLNTCK 115
Query: 233 SVNPQPSIVWASSSSVYGLNTQVP-----------FSESHRTDQPASLYAATKKAGEEIA 281
++ SS++ L Q P FS+ + + Y +K E A
Sbjct: 116 ETPSVKRVILTSSTAAV-LFRQPPIEANDVVDETFFSDPSLCRETKNWYPLSKILAENAA 174
Query: 282 HTYNHIYGLALTGLRFFTVYGPWGRPDMAYFF-FTKDILQGKTI---DVYKTQDDREVA 336
+ G+ + L + GP +P + + D + GK + Y+ D R+VA
Sbjct: 175 WEFAKDNGIDMVVLNPGFICGPLLQPTLNFSVELIVDFINGKNLFNNRFYRFVDVRDVA 233
|
Length = 322 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 469 | |||
| COG1087 | 329 | GalE UDP-glucose 4-epimerase [Cell envelope biogen | 100.0 | |
| COG1088 | 340 | RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope | 100.0 | |
| PRK15181 | 348 | Vi polysaccharide biosynthesis protein TviC; Provi | 100.0 | |
| KOG1371 | 343 | consensus UDP-glucose 4-epimerase/UDP-sulfoquinovo | 100.0 | |
| PLN02166 | 436 | dTDP-glucose 4,6-dehydratase | 100.0 | |
| PLN02206 | 442 | UDP-glucuronate decarboxylase | 100.0 | |
| TIGR01472 | 343 | gmd GDP-mannose 4,6-dehydratase. Excluded from thi | 100.0 | |
| PLN02572 | 442 | UDP-sulfoquinovose synthase | 100.0 | |
| PRK10217 | 355 | dTDP-glucose 4,6-dehydratase; Provisional | 100.0 | |
| PRK11908 | 347 | NAD-dependent epimerase/dehydratase family protein | 100.0 | |
| PLN02427 | 386 | UDP-apiose/xylose synthase | 100.0 | |
| PLN02653 | 340 | GDP-mannose 4,6-dehydratase | 100.0 | |
| TIGR02622 | 349 | CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Member | 100.0 | |
| PRK08125 | 660 | bifunctional UDP-glucuronic acid decarboxylase/UDP | 100.0 | |
| KOG1429 | 350 | consensus dTDP-glucose 4-6-dehydratase/UDP-glucuro | 100.0 | |
| TIGR01181 | 317 | dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This | 100.0 | |
| PRK10084 | 352 | dTDP-glucose 4,6 dehydratase; Provisional | 100.0 | |
| PLN02695 | 370 | GDP-D-mannose-3',5'-epimerase | 100.0 | |
| KOG0747 | 331 | consensus Putative NAD+-dependent epimerases [Carb | 100.0 | |
| PLN02240 | 352 | UDP-glucose 4-epimerase | 100.0 | |
| PLN02260 | 668 | probable rhamnose biosynthetic enzyme | 100.0 | |
| PRK10675 | 338 | UDP-galactose-4-epimerase; Provisional | 100.0 | |
| PRK09987 | 299 | dTDP-4-dehydrorhamnose reductase; Provisional | 100.0 | |
| PLN02725 | 306 | GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductas | 100.0 | |
| PLN02989 | 325 | cinnamyl-alcohol dehydrogenase family protein | 100.0 | |
| PLN02214 | 342 | cinnamoyl-CoA reductase | 100.0 | |
| COG0451 | 314 | WcaG Nucleoside-diphosphate-sugar epimerases [Cell | 100.0 | |
| PRK11150 | 308 | rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Pro | 100.0 | |
| PLN00016 | 378 | RNA-binding protein; Provisional | 100.0 | |
| PLN02662 | 322 | cinnamyl-alcohol dehydrogenase family protein | 100.0 | |
| PLN02896 | 353 | cinnamyl-alcohol dehydrogenase | 100.0 | |
| TIGR02197 | 314 | heptose_epim ADP-L-glycero-D-manno-heptose-6-epime | 100.0 | |
| TIGR01179 | 328 | galE UDP-glucose-4-epimerase. This enzyme intercon | 100.0 | |
| PLN00198 | 338 | anthocyanidin reductase; Provisional | 100.0 | |
| PLN02650 | 351 | dihydroflavonol-4-reductase | 100.0 | |
| PLN02986 | 322 | cinnamyl-alcohol dehydrogenase family protein | 100.0 | |
| TIGR01214 | 287 | rmlD dTDP-4-dehydrorhamnose reductase. This enzyme | 100.0 | |
| PF04321 | 286 | RmlD_sub_bind: RmlD substrate binding domain; Inte | 100.0 | |
| TIGR03466 | 328 | HpnA hopanoid-associated sugar epimerase. The sequ | 100.0 | |
| KOG1502 | 327 | consensus Flavonol reductase/cinnamoyl-CoA reducta | 100.0 | |
| COG1091 | 281 | RfbD dTDP-4-dehydrorhamnose reductase [Cell envelo | 100.0 | |
| PF01073 | 280 | 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/iso | 100.0 | |
| COG1089 | 345 | Gmd GDP-D-mannose dehydratase [Cell envelope bioge | 100.0 | |
| PF01370 | 236 | Epimerase: NAD dependent epimerase/dehydratase fam | 100.0 | |
| PLN02686 | 367 | cinnamoyl-CoA reductase | 100.0 | |
| TIGR03589 | 324 | PseB UDP-N-acetylglucosamine 4,6-dehydratase. This | 100.0 | |
| KOG1430 | 361 | consensus C-3 sterol dehydrogenase/3-beta-hydroxys | 100.0 | |
| CHL00194 | 317 | ycf39 Ycf39; Provisional | 100.0 | |
| PLN02778 | 298 | 3,5-epimerase/4-reductase | 100.0 | |
| PRK05865 | 854 | hypothetical protein; Provisional | 100.0 | |
| KOG1431 | 315 | consensus GDP-L-fucose synthetase [Carbohydrate tr | 100.0 | |
| PLN02996 | 491 | fatty acyl-CoA reductase | 100.0 | |
| PLN02583 | 297 | cinnamoyl-CoA reductase | 99.98 | |
| PRK07201 | 657 | short chain dehydrogenase; Provisional | 99.98 | |
| TIGR01777 | 292 | yfcH conserved hypothetical protein TIGR01777. Thi | 99.98 | |
| PLN02657 | 390 | 3,8-divinyl protochlorophyllide a 8-vinyl reductas | 99.97 | |
| COG1090 | 297 | Predicted nucleoside-diphosphate sugar epimerase [ | 99.97 | |
| TIGR01746 | 367 | Thioester-redct thioester reductase domain. It has | 99.96 | |
| PF02719 | 293 | Polysacc_synt_2: Polysaccharide biosynthesis prote | 99.96 | |
| COG1086 | 588 | Predicted nucleoside-diphosphate sugar epimerases | 99.96 | |
| KOG1372 | 376 | consensus GDP-mannose 4,6 dehydratase [Carbohydrat | 99.96 | |
| PLN02260 | 668 | probable rhamnose biosynthetic enzyme | 99.96 | |
| PLN02503 | 605 | fatty acyl-CoA reductase 2 | 99.95 | |
| PRK12320 | 699 | hypothetical protein; Provisional | 99.94 | |
| PF07993 | 249 | NAD_binding_4: Male sterility protein; InterPro: I | 99.93 | |
| TIGR03649 | 285 | ergot_EASG ergot alkaloid biosynthesis protein, AF | 99.92 | |
| KOG2865 | 391 | consensus NADH:ubiquinone oxidoreductase, NDUFA9/3 | 99.92 | |
| PRK06482 | 276 | short chain dehydrogenase; Provisional | 99.91 | |
| TIGR03443 | 1389 | alpha_am_amid L-aminoadipate-semialdehyde dehydrog | 99.91 | |
| PRK13394 | 262 | 3-hydroxybutyrate dehydrogenase; Provisional | 99.91 | |
| PRK12825 | 249 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.91 | |
| PRK06194 | 287 | hypothetical protein; Provisional | 99.91 | |
| PRK09135 | 249 | pteridine reductase; Provisional | 99.9 | |
| PLN00141 | 251 | Tic62-NAD(P)-related group II protein; Provisional | 99.9 | |
| PRK08263 | 275 | short chain dehydrogenase; Provisional | 99.9 | |
| COG3320 | 382 | Putative dehydrogenase domain of multifunctional n | 99.9 | |
| PRK12826 | 251 | 3-ketoacyl-(acyl-carrier-protein) reductase; Revie | 99.9 | |
| PRK05875 | 276 | short chain dehydrogenase; Provisional | 99.9 | |
| PRK12823 | 260 | benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylat | 99.89 | |
| PRK05876 | 275 | short chain dehydrogenase; Provisional | 99.89 | |
| PRK07774 | 250 | short chain dehydrogenase; Provisional | 99.89 | |
| PRK07067 | 257 | sorbitol dehydrogenase; Provisional | 99.89 | |
| KOG2774 | 366 | consensus NAD dependent epimerase [General functio | 99.89 | |
| PRK12429 | 258 | 3-hydroxybutyrate dehydrogenase; Provisional | 99.89 | |
| TIGR01963 | 255 | PHB_DH 3-hydroxybutyrate dehydrogenase. This model | 99.89 | |
| PLN03209 | 576 | translocon at the inner envelope of chloroplast su | 99.89 | |
| PRK07806 | 248 | short chain dehydrogenase; Provisional | 99.88 | |
| PRK06128 | 300 | oxidoreductase; Provisional | 99.88 | |
| PF13460 | 183 | NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X | 99.88 | |
| PRK07523 | 255 | gluconate 5-dehydrogenase; Provisional | 99.88 | |
| PRK12827 | 249 | short chain dehydrogenase; Provisional | 99.88 | |
| PRK07074 | 257 | short chain dehydrogenase; Provisional | 99.88 | |
| PRK12829 | 264 | short chain dehydrogenase; Provisional | 99.88 | |
| PRK12828 | 239 | short chain dehydrogenase; Provisional | 99.87 | |
| PRK12746 | 254 | short chain dehydrogenase; Provisional | 99.87 | |
| PRK12745 | 256 | 3-ketoacyl-(acyl-carrier-protein) reductase; Provi | 99.87 | |
| PRK06180 | 277 | short chain dehydrogenase; Provisional | 99.87 | |
| PRK07231 | 251 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.87 | |
| PRK08063 | 250 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.87 | |
| PRK06914 | 280 | short chain dehydrogenase; Provisional | 99.87 | |
| PRK06138 | 252 | short chain dehydrogenase; Provisional | 99.87 | |
| PRK12384 | 259 | sorbitol-6-phosphate dehydrogenase; Provisional | 99.87 | |
| PRK07890 | 258 | short chain dehydrogenase; Provisional | 99.87 | |
| PRK07775 | 274 | short chain dehydrogenase; Provisional | 99.87 | |
| PRK06077 | 252 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.87 | |
| PRK09134 | 258 | short chain dehydrogenase; Provisional | 99.87 | |
| PRK05653 | 246 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.86 | |
| PLN02253 | 280 | xanthoxin dehydrogenase | 99.86 | |
| PRK12935 | 247 | acetoacetyl-CoA reductase; Provisional | 99.86 | |
| PRK07060 | 245 | short chain dehydrogenase; Provisional | 99.86 | |
| KOG1221 | 467 | consensus Acyl-CoA reductase [Lipid transport and | 99.86 | |
| TIGR03206 | 250 | benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydr | 99.85 | |
| PRK07985 | 294 | oxidoreductase; Provisional | 99.85 | |
| PRK06701 | 290 | short chain dehydrogenase; Provisional | 99.85 | |
| PF05368 | 233 | NmrA: NmrA-like family; InterPro: IPR008030 NmrA i | 99.85 | |
| PRK06500 | 249 | short chain dehydrogenase; Provisional | 99.85 | |
| PRK05717 | 255 | oxidoreductase; Validated | 99.85 | |
| PRK06123 | 248 | short chain dehydrogenase; Provisional | 99.85 | |
| TIGR01832 | 248 | kduD 2-deoxy-D-gluconate 3-dehydrogenase. This mod | 99.85 | |
| PRK06182 | 273 | short chain dehydrogenase; Validated | 99.85 | |
| PRK06841 | 255 | short chain dehydrogenase; Provisional | 99.84 | |
| PRK08213 | 259 | gluconate 5-dehydrogenase; Provisional | 99.84 | |
| PRK05557 | 248 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.84 | |
| PRK09186 | 256 | flagellin modification protein A; Provisional | 99.84 | |
| PRK12939 | 250 | short chain dehydrogenase; Provisional | 99.84 | |
| PRK07856 | 252 | short chain dehydrogenase; Provisional | 99.84 | |
| PRK08220 | 252 | 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated | 99.84 | |
| PRK08628 | 258 | short chain dehydrogenase; Provisional | 99.84 | |
| PRK12937 | 245 | short chain dehydrogenase; Provisional | 99.83 | |
| PRK09242 | 257 | tropinone reductase; Provisional | 99.83 | |
| PRK07478 | 254 | short chain dehydrogenase; Provisional | 99.83 | |
| PRK06181 | 263 | short chain dehydrogenase; Provisional | 99.83 | |
| PRK12824 | 245 | acetoacetyl-CoA reductase; Provisional | 99.83 | |
| PRK06523 | 260 | short chain dehydrogenase; Provisional | 99.83 | |
| PRK06196 | 315 | oxidoreductase; Provisional | 99.83 | |
| PRK12744 | 257 | short chain dehydrogenase; Provisional | 99.83 | |
| COG4221 | 246 | Short-chain alcohol dehydrogenase of unknown speci | 99.83 | |
| PRK08085 | 254 | gluconate 5-dehydrogenase; Provisional | 99.83 | |
| PRK06113 | 255 | 7-alpha-hydroxysteroid dehydrogenase; Validated | 99.83 | |
| PRK08217 | 253 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.83 | |
| PRK06114 | 254 | short chain dehydrogenase; Provisional | 99.83 | |
| PRK06463 | 255 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.83 | |
| PRK06398 | 258 | aldose dehydrogenase; Validated | 99.83 | |
| PRK08324 | 681 | short chain dehydrogenase; Validated | 99.82 | |
| PRK07814 | 263 | short chain dehydrogenase; Provisional | 99.82 | |
| PRK08642 | 253 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.82 | |
| PRK06179 | 270 | short chain dehydrogenase; Provisional | 99.82 | |
| PRK12747 | 252 | short chain dehydrogenase; Provisional | 99.82 | |
| PRK07041 | 230 | short chain dehydrogenase; Provisional | 99.82 | |
| PRK12481 | 251 | 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | 99.82 | |
| TIGR01830 | 239 | 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) re | 99.82 | |
| PRK06124 | 256 | gluconate 5-dehydrogenase; Provisional | 99.82 | |
| PRK10538 | 248 | malonic semialdehyde reductase; Provisional | 99.82 | |
| PRK08265 | 261 | short chain dehydrogenase; Provisional | 99.82 | |
| PRK08643 | 256 | acetoin reductase; Validated | 99.82 | |
| PRK12743 | 256 | oxidoreductase; Provisional | 99.82 | |
| PRK08264 | 238 | short chain dehydrogenase; Validated | 99.82 | |
| PRK07326 | 237 | short chain dehydrogenase; Provisional | 99.82 | |
| PRK09730 | 247 | putative NAD(P)-binding oxidoreductase; Provisiona | 99.82 | |
| PRK07035 | 252 | short chain dehydrogenase; Provisional | 99.82 | |
| PRK07454 | 241 | short chain dehydrogenase; Provisional | 99.82 | |
| PRK07024 | 257 | short chain dehydrogenase; Provisional | 99.82 | |
| PRK06198 | 260 | short chain dehydrogenase; Provisional | 99.82 | |
| PRK06935 | 258 | 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | 99.82 | |
| PRK12742 | 237 | oxidoreductase; Provisional | 99.82 | |
| PRK07666 | 239 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.81 | |
| PRK07577 | 234 | short chain dehydrogenase; Provisional | 99.81 | |
| PRK07063 | 260 | short chain dehydrogenase; Provisional | 99.81 | |
| PRK07677 | 252 | short chain dehydrogenase; Provisional | 99.81 | |
| COG0300 | 265 | DltE Short-chain dehydrogenases of various substra | 99.81 | |
| PRK06550 | 235 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.81 | |
| PRK05650 | 270 | short chain dehydrogenase; Provisional | 99.81 | |
| PRK07069 | 251 | short chain dehydrogenase; Validated | 99.81 | |
| PRK08589 | 272 | short chain dehydrogenase; Validated | 99.81 | |
| PRK08219 | 227 | short chain dehydrogenase; Provisional | 99.81 | |
| PRK05867 | 253 | short chain dehydrogenase; Provisional | 99.81 | |
| PRK08277 | 278 | D-mannonate oxidoreductase; Provisional | 99.81 | |
| PRK12936 | 245 | 3-ketoacyl-(acyl-carrier-protein) reductase NodG; | 99.81 | |
| PRK12938 | 246 | acetyacetyl-CoA reductase; Provisional | 99.81 | |
| PRK08226 | 263 | short chain dehydrogenase; Provisional | 99.81 | |
| PRK08339 | 263 | short chain dehydrogenase; Provisional | 99.81 | |
| PRK07453 | 322 | protochlorophyllide oxidoreductase; Validated | 99.81 | |
| PRK05993 | 277 | short chain dehydrogenase; Provisional | 99.81 | |
| PRK06172 | 253 | short chain dehydrogenase; Provisional | 99.8 | |
| PRK07097 | 265 | gluconate 5-dehydrogenase; Provisional | 99.8 | |
| PRK08936 | 261 | glucose-1-dehydrogenase; Provisional | 99.8 | |
| PRK07825 | 273 | short chain dehydrogenase; Provisional | 99.8 | |
| PRK06197 | 306 | short chain dehydrogenase; Provisional | 99.8 | |
| PRK05565 | 247 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.8 | |
| PRK05872 | 296 | short chain dehydrogenase; Provisional | 99.8 | |
| PRK08993 | 253 | 2-deoxy-D-gluconate 3-dehydrogenase; Validated | 99.8 | |
| PRK07576 | 264 | short chain dehydrogenase; Provisional | 99.8 | |
| PRK08416 | 260 | 7-alpha-hydroxysteroid dehydrogenase; Provisional | 99.8 | |
| PRK07109 | 334 | short chain dehydrogenase; Provisional | 99.8 | |
| PRK06947 | 248 | glucose-1-dehydrogenase; Provisional | 99.8 | |
| PRK05866 | 293 | short chain dehydrogenase; Provisional | 99.79 | |
| PRK06101 | 240 | short chain dehydrogenase; Provisional | 99.79 | |
| PRK06057 | 255 | short chain dehydrogenase; Provisional | 99.79 | |
| PRK06949 | 258 | short chain dehydrogenase; Provisional | 99.79 | |
| PRK06483 | 236 | dihydromonapterin reductase; Provisional | 99.79 | |
| PRK08267 | 260 | short chain dehydrogenase; Provisional | 99.79 | |
| PRK07102 | 243 | short chain dehydrogenase; Provisional | 99.79 | |
| PRK08017 | 256 | oxidoreductase; Provisional | 99.79 | |
| PRK06079 | 252 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.79 | |
| TIGR02415 | 254 | 23BDH acetoin reductases. One member of this famil | 99.79 | |
| PRK05854 | 313 | short chain dehydrogenase; Provisional | 99.79 | |
| PRK06200 | 263 | 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrog | 99.79 | |
| PRK07904 | 253 | short chain dehydrogenase; Provisional | 99.79 | |
| TIGR01829 | 242 | AcAcCoA_reduct acetoacetyl-CoA reductase. (R)-3-hy | 99.78 | |
| PRK09291 | 257 | short chain dehydrogenase; Provisional | 99.78 | |
| PRK12748 | 256 | 3-ketoacyl-(acyl-carrier-protein) reductase; Provi | 99.78 | |
| PRK06171 | 266 | sorbitol-6-phosphate 2-dehydrogenase; Provisional | 99.78 | |
| PRK07792 | 306 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.78 | |
| TIGR02632 | 676 | RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alc | 99.78 | |
| PRK07831 | 262 | short chain dehydrogenase; Provisional | 99.78 | |
| PRK08251 | 248 | short chain dehydrogenase; Provisional | 99.78 | |
| PRK07062 | 265 | short chain dehydrogenase; Provisional | 99.78 | |
| PRK06505 | 271 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.78 | |
| PRK06139 | 330 | short chain dehydrogenase; Provisional | 99.78 | |
| PRK08340 | 259 | glucose-1-dehydrogenase; Provisional | 99.78 | |
| PRK08690 | 261 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.78 | |
| PRK05693 | 274 | short chain dehydrogenase; Provisional | 99.77 | |
| PRK08278 | 273 | short chain dehydrogenase; Provisional | 99.77 | |
| KOG3019 | 315 | consensus Predicted nucleoside-diphosphate sugar e | 99.77 | |
| PRK08594 | 257 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.77 | |
| TIGR02685 | 267 | pter_reduc_Leis pteridine reductase. Pteridine red | 99.77 | |
| PRK07791 | 286 | short chain dehydrogenase; Provisional | 99.77 | |
| PRK07533 | 258 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.77 | |
| KOG1205 | 282 | consensus Predicted dehydrogenase [Secondary metab | 99.77 | |
| PRK08703 | 239 | short chain dehydrogenase; Provisional | 99.76 | |
| PRK07984 | 262 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.76 | |
| PRK06603 | 260 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.76 | |
| PRK06484 | 520 | short chain dehydrogenase; Validated | 99.76 | |
| PRK06997 | 260 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.76 | |
| PRK09072 | 263 | short chain dehydrogenase; Provisional | 99.76 | |
| PRK08159 | 272 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.76 | |
| PRK08415 | 274 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.76 | |
| PRK05786 | 238 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.76 | |
| PRK07370 | 258 | enoyl-(acyl carrier protein) reductase; Validated | 99.76 | |
| PRK08945 | 247 | putative oxoacyl-(acyl carrier protein) reductase; | 99.75 | |
| PRK12859 | 256 | 3-ketoacyl-(acyl-carrier-protein) reductase; Provi | 99.75 | |
| TIGR01831 | 239 | fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductas | 99.75 | |
| PRK06924 | 251 | short chain dehydrogenase; Provisional | 99.75 | |
| PRK07578 | 199 | short chain dehydrogenase; Provisional | 99.75 | |
| PRK06953 | 222 | short chain dehydrogenase; Provisional | 99.75 | |
| PRK05855 | 582 | short chain dehydrogenase; Validated | 99.74 | |
| COG0702 | 275 | Predicted nucleoside-diphosphate-sugar epimerases | 99.74 | |
| PRK07832 | 272 | short chain dehydrogenase; Provisional | 99.74 | |
| PRK07889 | 256 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.74 | |
| PRK07023 | 243 | short chain dehydrogenase; Provisional | 99.73 | |
| PRK05884 | 223 | short chain dehydrogenase; Provisional | 99.73 | |
| PRK06125 | 259 | short chain dehydrogenase; Provisional | 99.73 | |
| TIGR03325 | 262 | BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydro | 99.73 | |
| PRK06940 | 275 | short chain dehydrogenase; Provisional | 99.73 | |
| PLN02780 | 320 | ketoreductase/ oxidoreductase | 99.73 | |
| PRK07201 | 657 | short chain dehydrogenase; Provisional | 99.72 | |
| KOG1201 | 300 | consensus Hydroxysteroid 17-beta dehydrogenase 11 | 99.71 | |
| TIGR01289 | 314 | LPOR light-dependent protochlorophyllide reductase | 99.7 | |
| PRK08261 | 450 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.7 | |
| PRK06484 | 520 | short chain dehydrogenase; Validated | 99.69 | |
| TIGR01500 | 256 | sepiapter_red sepiapterin reductase. This model de | 99.69 | |
| PRK05599 | 246 | hypothetical protein; Provisional | 99.68 | |
| KOG0725 | 270 | consensus Reductases with broad range of substrate | 99.68 | |
| PRK08177 | 225 | short chain dehydrogenase; Provisional | 99.68 | |
| PLN02730 | 303 | enoyl-[acyl-carrier-protein] reductase | 99.66 | |
| PRK08303 | 305 | short chain dehydrogenase; Provisional | 99.66 | |
| smart00822 | 180 | PKS_KR This enzymatic domain is part of bacterial | 99.66 | |
| PRK09009 | 235 | C factor cell-cell signaling protein; Provisional | 99.65 | |
| KOG1200 | 256 | consensus Mitochondrial/plastidial beta-ketoacyl-A | 99.65 | |
| PRK08862 | 227 | short chain dehydrogenase; Provisional | 99.64 | |
| PRK07424 | 406 | bifunctional sterol desaturase/short chain dehydro | 99.64 | |
| PRK12367 | 245 | short chain dehydrogenase; Provisional | 99.63 | |
| COG2910 | 211 | Putative NADH-flavin reductase [General function p | 99.63 | |
| PLN00015 | 308 | protochlorophyllide reductase | 99.62 | |
| PF13561 | 241 | adh_short_C2: Enoyl-(Acyl carrier protein) reducta | 99.59 | |
| PF00106 | 167 | adh_short: short chain dehydrogenase alcohol dehyd | 99.58 | |
| KOG1208 | 314 | consensus Dehydrogenases with different specificit | 99.56 | |
| COG3967 | 245 | DltE Short-chain dehydrogenase involved in D-alani | 99.54 | |
| COG1028 | 251 | FabG Dehydrogenases with different specificities ( | 99.54 | |
| PRK12428 | 241 | 3-alpha-hydroxysteroid dehydrogenase; Provisional | 99.53 | |
| PRK06300 | 299 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.52 | |
| KOG1209 | 289 | consensus 1-Acyl dihydroxyacetone phosphate reduct | 99.52 | |
| KOG1610 | 322 | consensus Corticosteroid 11-beta-dehydrogenase and | 99.52 | |
| KOG4288 | 283 | consensus Predicted oxidoreductase [General functi | 99.51 | |
| KOG4169 | 261 | consensus 15-hydroxyprostaglandin dehydrogenase an | 99.5 | |
| KOG1207 | 245 | consensus Diacetyl reductase/L-xylulose reductase | 99.49 | |
| KOG1203 | 411 | consensus Predicted dehydrogenase [Carbohydrate tr | 99.47 | |
| KOG1611 | 249 | consensus Predicted short chain-type dehydrogenase | 99.41 | |
| PF08659 | 181 | KR: KR domain; InterPro: IPR013968 This domain is | 99.4 | |
| KOG1210 | 331 | consensus Predicted 3-ketosphinganine reductase [S | 99.4 | |
| TIGR02813 | 2582 | omega_3_PfaA polyketide-type polyunsaturated fatty | 99.35 | |
| KOG1014 | 312 | consensus 17 beta-hydroxysteroid dehydrogenase typ | 99.23 | |
| KOG1199 | 260 | consensus Short-chain alcohol dehydrogenase/3-hydr | 99.22 | |
| KOG4039 | 238 | consensus Serine/threonine kinase TIP30/CC3 [Signa | 99.08 | |
| KOG1204 | 253 | consensus Predicted dehydrogenase [Secondary metab | 99.01 | |
| PRK06720 | 169 | hypothetical protein; Provisional | 98.94 | |
| PTZ00325 | 321 | malate dehydrogenase; Provisional | 98.93 | |
| PRK08309 | 177 | short chain dehydrogenase; Provisional | 98.91 | |
| COG0623 | 259 | FabI Enoyl-[acyl-carrier-protein] | 98.82 | |
| PLN00106 | 323 | malate dehydrogenase | 98.8 | |
| KOG1478 | 341 | consensus 3-keto sterol reductase [Lipid transport | 98.77 | |
| PF13950 | 62 | Epimerase_Csub: UDP-glucose 4-epimerase C-term sub | 98.7 | |
| PRK13656 | 398 | trans-2-enoyl-CoA reductase; Provisional | 98.7 | |
| COG1748 | 389 | LYS9 Saccharopine dehydrogenase and related protei | 98.62 | |
| PRK09620 | 229 | hypothetical protein; Provisional | 98.6 | |
| cd01336 | 325 | MDH_cytoplasmic_cytosolic Cytoplasmic and cytosoli | 98.55 | |
| cd01338 | 322 | MDH_choloroplast_like Chloroplast-like malate dehy | 98.52 | |
| TIGR00715 | 256 | precor6x_red precorrin-6x reductase. This enzyme w | 98.32 | |
| PRK06732 | 229 | phosphopantothenate--cysteine ligase; Validated | 98.31 | |
| PF03435 | 386 | Saccharop_dh: Saccharopine dehydrogenase ; InterPr | 98.28 | |
| PRK05086 | 312 | malate dehydrogenase; Provisional | 98.24 | |
| cd00704 | 323 | MDH Malate dehydrogenase. Malate dehydrogenase (MD | 98.21 | |
| cd01078 | 194 | NAD_bind_H4MPT_DH NADP binding domain of methylene | 98.14 | |
| TIGR01758 | 324 | MDH_euk_cyt malate dehydrogenase, NAD-dependent. T | 98.0 | |
| PRK05579 | 399 | bifunctional phosphopantothenoylcysteine decarboxy | 97.98 | |
| PF00056 | 141 | Ldh_1_N: lactate/malate dehydrogenase, NAD binding | 97.94 | |
| KOG2733 | 423 | consensus Uncharacterized membrane protein [Functi | 97.92 | |
| KOG4022 | 236 | consensus Dihydropteridine reductase DHPR/QDPR [Am | 97.82 | |
| PRK12548 | 289 | shikimate 5-dehydrogenase; Provisional | 97.8 | |
| COG0569 | 225 | TrkA K+ transport systems, NAD-binding component [ | 97.77 | |
| PRK00066 | 315 | ldh L-lactate dehydrogenase; Reviewed | 97.72 | |
| cd05294 | 309 | LDH-like_MDH_nadp A lactate dehydrogenases-like st | 97.72 | |
| TIGR02114 | 227 | coaB_strep phosphopantothenate--cysteine ligase, s | 97.68 | |
| TIGR00521 | 390 | coaBC_dfp phosphopantothenoylcysteine decarboxylas | 97.62 | |
| PRK14982 | 340 | acyl-ACP reductase; Provisional | 97.59 | |
| PRK07688 | 339 | thiamine/molybdopterin biosynthesis ThiF/MoeB-like | 97.57 | |
| PRK12475 | 338 | thiamine/molybdopterin biosynthesis MoeB-like prot | 97.57 | |
| cd05291 | 306 | HicDH_like L-2-hydroxyisocapronate dehydrogenases | 97.5 | |
| cd00650 | 263 | LDH_MDH_like NAD-dependent, lactate dehydrogenase- | 97.45 | |
| COG4982 | 866 | 3-oxoacyl-[acyl-carrier protein] | 97.45 | |
| cd01337 | 310 | MDH_glyoxysomal_mitochondrial Glyoxysomal and mito | 97.45 | |
| TIGR01759 | 323 | MalateDH-SF1 malate dehydrogenase. This model repr | 97.39 | |
| COG3268 | 382 | Uncharacterized conserved protein [Function unknow | 97.39 | |
| PLN02968 | 381 | Probable N-acetyl-gamma-glutamyl-phosphate reducta | 97.31 | |
| PF04127 | 185 | DFP: DNA / pantothenate metabolism flavoprotein; I | 97.27 | |
| PRK14106 | 450 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 97.25 | |
| PRK05442 | 326 | malate dehydrogenase; Provisional | 97.24 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 97.22 | |
| PF02254 | 116 | TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg | 97.2 | |
| PTZ00117 | 319 | malate dehydrogenase; Provisional | 97.16 | |
| PLN02819 | 1042 | lysine-ketoglutarate reductase/saccharopine dehydr | 97.15 | |
| PLN00112 | 444 | malate dehydrogenase (NADP); Provisional | 97.15 | |
| TIGR02356 | 202 | adenyl_thiF thiazole biosynthesis adenylyltransfer | 97.14 | |
| PF01118 | 121 | Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi | 97.11 | |
| COG0039 | 313 | Mdh Malate/lactate dehydrogenases [Energy producti | 97.11 | |
| PRK06223 | 307 | malate dehydrogenase; Reviewed | 97.1 | |
| TIGR01772 | 312 | MDH_euk_gproteo malate dehydrogenase, NAD-dependen | 97.09 | |
| PF01488 | 135 | Shikimate_DH: Shikimate / quinate 5-dehydrogenase; | 97.09 | |
| KOG1494 | 345 | consensus NAD-dependent malate dehydrogenase [Ener | 97.08 | |
| cd05293 | 312 | LDH_1 A subgroup of L-lactate dehydrogenases. L-la | 97.05 | |
| cd05292 | 308 | LDH_2 A subgroup of L-lactate dehydrogenases. L-la | 97.05 | |
| TIGR01763 | 305 | MalateDH_bact malate dehydrogenase, NAD-dependent. | 97.04 | |
| PRK14874 | 334 | aspartate-semialdehyde dehydrogenase; Provisional | 97.02 | |
| cd01483 | 143 | E1_enzyme_family Superfamily of activating enzymes | 96.94 | |
| PF01113 | 124 | DapB_N: Dihydrodipicolinate reductase, N-terminus; | 96.92 | |
| PRK08644 | 212 | thiamine biosynthesis protein ThiF; Provisional | 96.92 | |
| PRK06129 | 308 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 96.91 | |
| cd05295 | 452 | MDH_like Malate dehydrogenase-like. These MDH-like | 96.9 | |
| PF00899 | 135 | ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a | 96.87 | |
| PLN02602 | 350 | lactate dehydrogenase | 96.86 | |
| cd05290 | 307 | LDH_3 A subgroup of L-lactate dehydrogenases. L-la | 96.8 | |
| KOG1202 | 2376 | consensus Animal-type fatty acid synthase and rela | 96.8 | |
| PTZ00082 | 321 | L-lactate dehydrogenase; Provisional | 96.8 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 96.79 | |
| cd01487 | 174 | E1_ThiF_like E1_ThiF_like. Member of superfamily o | 96.77 | |
| PRK08328 | 231 | hypothetical protein; Provisional | 96.76 | |
| cd00757 | 228 | ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1 | 96.74 | |
| TIGR02354 | 200 | thiF_fam2 thiamine biosynthesis protein ThiF, fami | 96.68 | |
| cd00300 | 300 | LDH_like L-lactate dehydrogenase-like enzymes. Mem | 96.65 | |
| TIGR01757 | 387 | Malate-DH_plant malate dehydrogenase, NADP-depende | 96.64 | |
| PRK03659 | 601 | glutathione-regulated potassium-efflux system prot | 96.58 | |
| TIGR02355 | 240 | moeB molybdopterin synthase sulfurylase MoeB. This | 96.55 | |
| cd01485 | 198 | E1-1_like Ubiquitin activating enzyme (E1), repeat | 96.54 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 96.51 | |
| PRK05597 | 355 | molybdopterin biosynthesis protein MoeB; Validated | 96.49 | |
| PRK08762 | 376 | molybdopterin biosynthesis protein MoeB; Validated | 96.49 | |
| PRK05671 | 336 | aspartate-semialdehyde dehydrogenase; Reviewed | 96.47 | |
| cd01492 | 197 | Aos1_SUMO Ubiquitin activating enzyme (E1) subunit | 96.46 | |
| PF00070 | 80 | Pyr_redox: Pyridine nucleotide-disulphide oxidored | 96.4 | |
| PRK05690 | 245 | molybdopterin biosynthesis protein MoeB; Provision | 96.39 | |
| COG0604 | 326 | Qor NADPH:quinone reductase and related Zn-depende | 96.38 | |
| PRK15116 | 268 | sulfur acceptor protein CsdL; Provisional | 96.34 | |
| KOG1198 | 347 | consensus Zinc-binding oxidoreductase [Energy prod | 96.34 | |
| PRK02472 | 447 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 96.33 | |
| PRK08057 | 248 | cobalt-precorrin-6x reductase; Reviewed | 96.25 | |
| PRK00048 | 257 | dihydrodipicolinate reductase; Provisional | 96.23 | |
| PF02571 | 249 | CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: | 96.17 | |
| cd01339 | 300 | LDH-like_MDH L-lactate dehydrogenase-like malate d | 96.16 | |
| cd01080 | 168 | NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of | 96.15 | |
| TIGR01850 | 346 | argC N-acetyl-gamma-glutamyl-phosphate reductase, | 96.13 | |
| cd01489 | 312 | Uba2_SUMO Ubiquitin activating enzyme (E1) subunit | 96.13 | |
| TIGR01296 | 339 | asd_B aspartate-semialdehyde dehydrogenase (peptid | 96.11 | |
| PRK08223 | 287 | hypothetical protein; Validated | 96.1 | |
| PRK00436 | 343 | argC N-acetyl-gamma-glutamyl-phosphate reductase; | 96.09 | |
| COG1004 | 414 | Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en | 96.06 | |
| PRK10669 | 558 | putative cation:proton antiport protein; Provision | 96.03 | |
| PRK08664 | 349 | aspartate-semialdehyde dehydrogenase; Reviewed | 96.03 | |
| cd01065 | 155 | NAD_bind_Shikimate_DH NAD(P) binding domain of Shi | 95.99 | |
| TIGR01470 | 205 | cysG_Nterm siroheme synthase, N-terminal domain. T | 95.98 | |
| PRK07066 | 321 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 95.92 | |
| TIGR01915 | 219 | npdG NADPH-dependent F420 reductase. This model re | 95.91 | |
| PRK13982 | 475 | bifunctional SbtC-like/phosphopantothenoylcysteine | 95.89 | |
| cd08295 | 338 | double_bond_reductase_like Arabidopsis alkenal dou | 95.89 | |
| PRK08261 | 450 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 95.85 | |
| PRK07878 | 392 | molybdopterin biosynthesis-like protein MoeZ; Vali | 95.82 | |
| cd08259 | 332 | Zn_ADH5 Alcohol dehydrogenases of the MDR family. | 95.82 | |
| PRK11199 | 374 | tyrA bifunctional chorismate mutase/prephenate deh | 95.8 | |
| cd01484 | 234 | E1-2_like Ubiquitin activating enzyme (E1), repeat | 95.8 | |
| COG2085 | 211 | Predicted dinucleotide-binding enzymes [General fu | 95.79 | |
| PF03446 | 163 | NAD_binding_2: NAD binding domain of 6-phosphogluc | 95.77 | |
| TIGR02825 | 325 | B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15 | 95.77 | |
| TIGR01771 | 299 | L-LDH-NAD L-lactate dehydrogenase. This model repr | 95.76 | |
| PLN02383 | 344 | aspartate semialdehyde dehydrogenase | 95.74 | |
| PRK03562 | 621 | glutathione-regulated potassium-efflux system prot | 95.74 | |
| TIGR02853 | 287 | spore_dpaA dipicolinic acid synthetase, A subunit. | 95.74 | |
| PRK00258 | 278 | aroE shikimate 5-dehydrogenase; Reviewed | 95.73 | |
| KOG0023 | 360 | consensus Alcohol dehydrogenase, class V [Secondar | 95.7 | |
| PF03721 | 185 | UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen | 95.69 | |
| PRK14192 | 283 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.66 | |
| PRK06849 | 389 | hypothetical protein; Provisional | 95.66 | |
| COG0027 | 394 | PurT Formate-dependent phosphoribosylglycinamide f | 95.64 | |
| PRK09260 | 288 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 95.59 | |
| PRK05600 | 370 | thiamine biosynthesis protein ThiF; Validated | 95.58 | |
| PRK14619 | 308 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 95.56 | |
| COG1179 | 263 | Dinucleotide-utilizing enzymes involved in molybdo | 95.55 | |
| COG2130 | 340 | Putative NADP-dependent oxidoreductases [General f | 95.53 | |
| cd08253 | 325 | zeta_crystallin Zeta-crystallin with NADP-dependen | 95.53 | |
| PRK09288 | 395 | purT phosphoribosylglycinamide formyltransferase 2 | 95.46 | |
| TIGR00518 | 370 | alaDH alanine dehydrogenase. The family of known L | 95.45 | |
| cd01075 | 200 | NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l | 95.4 | |
| PRK08293 | 287 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 95.4 | |
| cd08266 | 342 | Zn_ADH_like1 Alcohol dehydrogenases of the MDR fam | 95.35 | |
| PRK08306 | 296 | dipicolinate synthase subunit A; Reviewed | 95.35 | |
| cd08294 | 329 | leukotriene_B4_DH_like 13-PGR is a bifunctional en | 95.32 | |
| PRK06718 | 202 | precorrin-2 dehydrogenase; Reviewed | 95.31 | |
| PRK07877 | 722 | hypothetical protein; Provisional | 95.27 | |
| TIGR00507 | 270 | aroE shikimate 5-dehydrogenase. This model finds p | 95.26 | |
| KOG2018 | 430 | consensus Predicted dinucleotide-utilizing enzyme | 95.17 | |
| TIGR02717 | 447 | AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP | 95.14 | |
| PRK01438 | 480 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 95.14 | |
| cd00755 | 231 | YgdL_like Family of activating enzymes (E1) of ubi | 95.13 | |
| cd08239 | 339 | THR_DH_like L-threonine dehydrogenase (TDH)-like. | 95.1 | |
| TIGR03366 | 280 | HpnZ_proposed putative phosphonate catabolism asso | 95.09 | |
| cd08292 | 324 | ETR_like_2 2-enoyl thioester reductase (ETR) like | 94.98 | |
| PRK14175 | 286 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.97 | |
| TIGR01019 | 286 | sucCoAalpha succinyl-CoA synthetase, alpha subunit | 94.97 | |
| PRK10537 | 393 | voltage-gated potassium channel; Provisional | 94.95 | |
| cd05188 | 271 | MDR Medium chain reductase/dehydrogenase (MDR)/zin | 94.92 | |
| cd08289 | 326 | MDR_yhfp_like Yhfp putative quinone oxidoreductase | 94.86 | |
| PF13380 | 116 | CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5 | 94.86 | |
| PRK07819 | 286 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 94.82 | |
| PRK06019 | 372 | phosphoribosylaminoimidazole carboxylase ATPase su | 94.81 | |
| cd08250 | 329 | Mgc45594_like Mgc45594 gene product and other MDR | 94.79 | |
| cd00401 | 413 | AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado | 94.76 | |
| PLN03154 | 348 | putative allyl alcohol dehydrogenase; Provisional | 94.7 | |
| TIGR03451 | 358 | mycoS_dep_FDH mycothiol-dependent formaldehyde deh | 94.69 | |
| TIGR00978 | 341 | asd_EA aspartate-semialdehyde dehydrogenase (non-p | 94.69 | |
| PF02826 | 178 | 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy | 94.68 | |
| cd08230 | 355 | glucose_DH Glucose dehydrogenase. Glucose dehydrog | 94.67 | |
| PRK15469 | 312 | ghrA bifunctional glyoxylate/hydroxypyruvate reduc | 94.66 | |
| PRK07531 | 495 | bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe | 94.65 | |
| PRK12549 | 284 | shikimate 5-dehydrogenase; Reviewed | 94.63 | |
| cd08293 | 345 | PTGR2 Prostaglandin reductase. Prostaglandins and | 94.62 | |
| PRK10309 | 347 | galactitol-1-phosphate dehydrogenase; Provisional | 94.61 | |
| PRK06719 | 157 | precorrin-2 dehydrogenase; Validated | 94.59 | |
| PRK11064 | 415 | wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro | 94.59 | |
| PRK09880 | 343 | L-idonate 5-dehydrogenase; Provisional | 94.55 | |
| PRK12749 | 288 | quinate/shikimate dehydrogenase; Reviewed | 94.52 | |
| KOG0172 | 445 | consensus Lysine-ketoglutarate reductase/saccharop | 94.49 | |
| PRK14194 | 301 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.49 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 94.48 | |
| PF02882 | 160 | THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl | 94.48 | |
| PRK07411 | 390 | hypothetical protein; Validated | 94.46 | |
| cd05280 | 325 | MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone | 94.43 | |
| PRK08655 | 437 | prephenate dehydrogenase; Provisional | 94.37 | |
| PRK06598 | 369 | aspartate-semialdehyde dehydrogenase; Reviewed | 94.3 | |
| PRK14851 | 679 | hypothetical protein; Provisional | 94.29 | |
| PRK06153 | 393 | hypothetical protein; Provisional | 94.24 | |
| PRK06130 | 311 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 94.24 | |
| COG0136 | 334 | Asd Aspartate-semialdehyde dehydrogenase [Amino ac | 94.21 | |
| PF00670 | 162 | AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase | 94.18 | |
| PRK14188 | 296 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.18 | |
| PF02737 | 180 | 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind | 94.17 | |
| COG0169 | 283 | AroE Shikimate 5-dehydrogenase [Amino acid transpo | 94.16 | |
| cd05282 | 323 | ETR_like 2-enoyl thioester reductase-like. 2-enoyl | 94.15 | |
| COG0026 | 375 | PurK Phosphoribosylaminoimidazole carboxylase (NCA | 94.11 | |
| cd08268 | 328 | MDR2 Medium chain dehydrogenases/reductase (MDR)/z | 94.09 | |
| cd05288 | 329 | PGDH Prostaglandin dehydrogenases. Prostaglandins | 94.07 | |
| PRK14852 | 989 | hypothetical protein; Provisional | 94.06 | |
| cd05276 | 323 | p53_inducible_oxidoreductase PIG3 p53-inducible qu | 94.05 | |
| KOG1196 | 343 | consensus Predicted NAD-dependent oxidoreductase [ | 94.03 | |
| cd08231 | 361 | MDR_TM0436_like Hypothetical enzyme TM0436 resembl | 94.01 | |
| PRK05476 | 425 | S-adenosyl-L-homocysteine hydrolase; Provisional | 94.0 | |
| PRK13940 | 414 | glutamyl-tRNA reductase; Provisional | 93.94 | |
| PRK13243 | 333 | glyoxylate reductase; Reviewed | 93.93 | |
| PF03807 | 96 | F420_oxidored: NADP oxidoreductase coenzyme F420-d | 93.92 | |
| PRK08040 | 336 | putative semialdehyde dehydrogenase; Provisional | 93.89 | |
| cd08248 | 350 | RTN4I1 Human Reticulon 4 Interacting Protein 1. Hu | 93.81 | |
| cd05212 | 140 | NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom | 93.79 | |
| TIGR01142 | 380 | purT phosphoribosylglycinamide formyltransferase 2 | 93.79 |
| >COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-48 Score=364.31 Aligned_cols=309 Identities=28% Similarity=0.400 Sum_probs=267.8
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCccEEE
Q 012176 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTHVL 198 (469)
Q Consensus 119 ~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~d~Vi 198 (469)
|+||||||+||||+|.+.+|++.|++|+++|+........+.+ ..+.+++||+.|.+.++++|+..++|.||
T Consensus 1 ~~iLVtGGAGYIGSHtv~~Ll~~G~~vvV~DNL~~g~~~~v~~--------~~~~f~~gDi~D~~~L~~vf~~~~idaVi 72 (329)
T COG1087 1 MKVLVTGGAGYIGSHTVRQLLKTGHEVVVLDNLSNGHKIALLK--------LQFKFYEGDLLDRALLTAVFEENKIDAVV 72 (329)
T ss_pred CeEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCCHHHhhh--------ccCceEEeccccHHHHHHHHHhcCCCEEE
Confidence 6899999999999999999999999999999865533222211 12789999999999999999999999999
Q ss_pred EcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcCccccCCCCCCCCCCCCCCCCCCChHHHHHHHHH
Q 012176 199 HLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGE 278 (469)
Q Consensus 199 h~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y~~sK~~~E 278 (469)
|+||...+..+.++|..+++.|+.||.+|+++|+++|++ +|||-||++|||.....|++|+.+. .|.++||.||++.|
T Consensus 73 HFAa~~~VgESv~~Pl~Yy~NNv~gTl~Ll~am~~~gv~-~~vFSStAavYG~p~~~PI~E~~~~-~p~NPYG~sKlm~E 150 (329)
T COG1087 73 HFAASISVGESVQNPLKYYDNNVVGTLNLIEAMLQTGVK-KFIFSSTAAVYGEPTTSPISETSPL-APINPYGRSKLMSE 150 (329)
T ss_pred ECccccccchhhhCHHHHHhhchHhHHHHHHHHHHhCCC-EEEEecchhhcCCCCCcccCCCCCC-CCCCcchhHHHHHH
Confidence 999999999999999999999999999999999999998 9999999999999999999999998 69999999999999
Q ss_pred HHHHHHHHHhCCcEEEEeecceecCCC------CC---CChHHHHHHHHHcCCc-eEEEee---CCCCcceEecccHHHH
Q 012176 279 EIAHTYNHIYGLALTGLRFFTVYGPWG------RP---DMAYFFFTKDILQGKT-IDVYKT---QDDREVARDFTYIDDV 345 (469)
Q Consensus 279 ~~~~~~~~~~gi~~~ilRp~~v~Gp~~------~~---~~~~~~~~~~~~~g~~-~~~~~~---~~~~~~~~~~v~v~Dv 345 (469)
++++.+...++++++++|.+++.|... ++ +..++..++.++..++ +.+++. --||...||||||.|+
T Consensus 151 ~iL~d~~~a~~~~~v~LRYFN~aGA~~~G~iGe~~~~~thLip~~~q~A~G~r~~l~ifG~DY~T~DGT~iRDYIHV~DL 230 (329)
T COG1087 151 EILRDAAKANPFKVVILRYFNVAGACPDGTLGQRYPGATLLIPVAAEAALGKRDKLFIFGDDYDTKDGTCIRDYIHVDDL 230 (329)
T ss_pred HHHHHHHHhCCCcEEEEEecccccCCCCCccCCCCCCcchHHHHHHHHHhcCCceeEEeCCCCCCCCCCeeeeeeehhHH
Confidence 999999999999999999999998421 12 2355666666665554 677752 2357789999999999
Q ss_pred HHHHHHHhccCCCCCCCCCceEEEeCCCCcccHHHHHHHHHHHhCCCccceeecCCCCCCCCcccCChHHHHHhcCCCcc
Q 012176 346 VKGCVGATGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRNGDVPYTHANVSLAYKDFGYKPT 425 (469)
Q Consensus 346 a~~~~~~~~~~~~~~~~~~~~iyni~~~~~vt~~el~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~ 425 (469)
|++++.+++.-.. .....+||+++|...|+.|+++.+.++.|++.+.... ..|.||+...++|.+||+++|||+|+
T Consensus 231 A~aH~~Al~~L~~---~g~~~~~NLG~G~G~SV~evi~a~~~vtg~~ip~~~~-~RR~GDpa~l~Ad~~kA~~~Lgw~p~ 306 (329)
T COG1087 231 ADAHVLALKYLKE---GGSNNIFNLGSGNGFSVLEVIEAAKKVTGRDIPVEIA-PRRAGDPAILVADSSKARQILGWQPT 306 (329)
T ss_pred HHHHHHHHHHHHh---CCceeEEEccCCCceeHHHHHHHHHHHhCCcCceeeC-CCCCCCCceeEeCHHHHHHHhCCCcc
Confidence 9999999774321 1112799999999999999999999999988766644 46799999999999999999999999
Q ss_pred C-cHHHHHHHHHHHHHH
Q 012176 426 T-DLAAGLRKFVKWYVS 441 (469)
Q Consensus 426 ~-~l~~~l~~~v~~~~~ 441 (469)
+ +|++.+++.+.|...
T Consensus 307 ~~~L~~ii~~aw~W~~~ 323 (329)
T COG1087 307 YDDLEDIIKDAWDWHQQ 323 (329)
T ss_pred cCCHHHHHHHHHHHhhh
Confidence 9 899999999999974
|
|
| >COG1088 RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-48 Score=362.78 Aligned_cols=313 Identities=26% Similarity=0.405 Sum_probs=277.8
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCC--cEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCccE
Q 012176 119 MTVLVTGAAGFVGSHCSLALKKRGD--GVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTH 196 (469)
Q Consensus 119 ~~VlVtGatG~IG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~d~ 196 (469)
|++|||||.||||+.+++.++++.. +|+.++.-.- ... ..........++..++++|++|.+.+.++++..++|+
T Consensus 1 ~~iLVTGGaGFIGsnfvr~~~~~~~d~~v~~~DkLTY--Agn-~~~l~~~~~~~~~~fv~~DI~D~~~v~~~~~~~~~D~ 77 (340)
T COG1088 1 MKILVTGGAGFIGSNFVRYILNKHPDDHVVNLDKLTY--AGN-LENLADVEDSPRYRFVQGDICDRELVDRLFKEYQPDA 77 (340)
T ss_pred CcEEEecCcchHHHHHHHHHHhcCCCceEEEEecccc--cCC-HHHHHhhhcCCCceEEeccccCHHHHHHHHHhcCCCe
Confidence 6799999999999999999999854 4677765321 111 2222344556799999999999999999999888899
Q ss_pred EEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcCccccCCCCC--CCCCCCCCCCCCCChHHHHH
Q 012176 197 VLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQ--VPFSESHRTDQPASLYAATK 274 (469)
Q Consensus 197 Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS~~vyg~~~~--~~~~E~~~~~~p~~~Y~~sK 274 (469)
|+|+||-.+++.+-.+|..+++.|+.||.+||+++++...+-+|+++|+-.|||.-.. ..|+|.++- .|.++|++||
T Consensus 78 VvhfAAESHVDRSI~~P~~Fi~TNv~GT~~LLEaar~~~~~frf~HISTDEVYG~l~~~~~~FtE~tp~-~PsSPYSASK 156 (340)
T COG1088 78 VVHFAAESHVDRSIDGPAPFIQTNVVGTYTLLEAARKYWGKFRFHHISTDEVYGDLGLDDDAFTETTPY-NPSSPYSASK 156 (340)
T ss_pred EEEechhccccccccChhhhhhcchHHHHHHHHHHHHhcccceEEEeccccccccccCCCCCcccCCCC-CCCCCcchhh
Confidence 9999999999999999999999999999999999999986458999999999996544 378999987 8999999999
Q ss_pred HHHHHHHHHHHHHhCCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceEecccHHHHHHHHHHHhc
Q 012176 275 KAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGATG 354 (469)
Q Consensus 275 ~~~E~~~~~~~~~~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~~~~~~~~ 354 (469)
+++..+++.|.+.||++++|.|+++-|||+..+..+++.++.+++.|++++++ |+|.+.+||+||+|=++++..+++
T Consensus 157 AasD~lVray~~TYglp~~ItrcSNNYGPyqfpEKlIP~~I~nal~g~~lpvY---GdG~~iRDWl~VeDh~~ai~~Vl~ 233 (340)
T COG1088 157 AASDLLVRAYVRTYGLPATITRCSNNYGPYQFPEKLIPLMIINALLGKPLPVY---GDGLQIRDWLYVEDHCRAIDLVLT 233 (340)
T ss_pred hhHHHHHHHHHHHcCCceEEecCCCCcCCCcCchhhhHHHHHHHHcCCCCcee---cCCcceeeeEEeHhHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999 889999999999999999999998
Q ss_pred cCCCCCCCCCceEEEeCCCCcccHHHHHHHHHHHhCCCccc----eeecCCCCCCCCcccCChHHHHHhcCCCccCcHHH
Q 012176 355 SGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKK----HVIRMPRNGDVPYTHANVSLAYKDFGYKPTTDLAA 430 (469)
Q Consensus 355 ~~~~~~~~~~~~iyni~~~~~vt~~el~~~i~~~~g~~~~~----~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~~l~~ 430 (469)
+.. .|++|||+++...+--|+++.|.+++|+.... +..-..++|.-..+..|.+|++++|||+|.+++++
T Consensus 234 kg~------~GE~YNIgg~~E~~Nlevv~~i~~~l~~~~~~~~~li~~V~DRpGHD~RYaid~~Ki~~eLgW~P~~~fe~ 307 (340)
T COG1088 234 KGK------IGETYNIGGGNERTNLEVVKTICELLGKDKPDYRDLITFVEDRPGHDRRYAIDASKIKRELGWRPQETFET 307 (340)
T ss_pred cCc------CCceEEeCCCccchHHHHHHHHHHHhCccccchhhheEeccCCCCCccceeechHHHhhhcCCCcCCCHHH
Confidence 863 26999999999999999999999999988762 33344678877888899999999999999999999
Q ss_pred HHHHHHHHHHHHcC
Q 012176 431 GLRKFVKWYVSYYG 444 (469)
Q Consensus 431 ~l~~~v~~~~~~~~ 444 (469)
||+++++||+++..
T Consensus 308 GlrkTv~WY~~N~~ 321 (340)
T COG1088 308 GLRKTVDWYLDNEW 321 (340)
T ss_pred HHHHHHHHHHhchH
Confidence 99999999998754
|
|
| >PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-47 Score=384.48 Aligned_cols=316 Identities=28% Similarity=0.447 Sum_probs=261.2
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHH--hhccCCeEEEEecCCCHHHHHHhhccCC
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQK--LLQKHQVFIVEGDLNDAPLLTKLFDVVP 193 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~v~~v~~Dl~d~~~l~~~~~~~~ 193 (469)
.++|+||||||+||||++|+++|+++|++|++++|............... .....++.++.+|++|.+.+.++++++
T Consensus 13 ~~~~~vlVtGatGfiG~~lv~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~d~~~l~~~~~~~- 91 (348)
T PRK15181 13 LAPKRWLITGVAGFIGSGLLEELLFLNQTVIGLDNFSTGYQHNLDDVRTSVSEEQWSRFIFIQGDIRKFTDCQKACKNV- 91 (348)
T ss_pred ccCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCCCcchhhhhhhhhccccccCCceEEEEccCCCHHHHHHHhhCC-
Confidence 56789999999999999999999999999999998654322222211111 011236889999999999999999875
Q ss_pred ccEEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcCccccCCCCCCCCCCCCCCCCCCChHHHH
Q 012176 194 FTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAAT 273 (469)
Q Consensus 194 ~d~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y~~s 273 (469)
|+|||+|+.........++....++|+.|+.+|+++|++.+++ +|||+||.+|||...+.+..|+++. .|.+.|+.+
T Consensus 92 -d~ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~-~~v~~SS~~vyg~~~~~~~~e~~~~-~p~~~Y~~s 168 (348)
T PRK15181 92 -DYVLHQAALGSVPRSLKDPIATNSANIDGFLNMLTAARDAHVS-SFTYAASSSTYGDHPDLPKIEERIG-RPLSPYAVT 168 (348)
T ss_pred -CEEEECccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCC-eEEEeechHhhCCCCCCCCCCCCCC-CCCChhhHH
Confidence 9999999987666666788889999999999999999999987 9999999999997666677887665 688899999
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEeecceecCCCCCC----ChHHHHHHHHHcCCceEEEeeCCCCcceEecccHHHHHHHH
Q 012176 274 KKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPD----MAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGC 349 (469)
Q Consensus 274 K~~~E~~~~~~~~~~gi~~~ilRp~~v~Gp~~~~~----~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~~~ 349 (469)
|.++|.++..+.+.++++++++||++||||+..++ .+++.++..+..++++.++ +++++.++|+||+|+|+++
T Consensus 169 K~~~e~~~~~~~~~~~~~~~~lR~~~vyGp~~~~~~~~~~~i~~~~~~~~~~~~i~~~---g~g~~~rd~i~v~D~a~a~ 245 (348)
T PRK15181 169 KYVNELYADVFARSYEFNAIGLRYFNVFGRRQNPNGAYSAVIPRWILSLLKDEPIYIN---GDGSTSRDFCYIENVIQAN 245 (348)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEecceeCcCCCCCCccccCHHHHHHHHHcCCCcEEe---CCCCceEeeEEHHHHHHHH
Confidence 99999999999888899999999999999986543 4678888888999998888 7799999999999999999
Q ss_pred HHHhccCCCCCCCCCceEEEeCCCCcccHHHHHHHHHHHhCCCc------cceeecCCCCCCCCcccCChHHHHHhcCCC
Q 012176 350 VGATGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKA------KKHVIRMPRNGDVPYTHANVSLAYKDFGYK 423 (469)
Q Consensus 350 ~~~~~~~~~~~~~~~~~iyni~~~~~vt~~el~~~i~~~~g~~~------~~~~~~~~~~~~~~~~~~d~~ka~~~LG~~ 423 (469)
+.++..... ...+++|||++++++|+.|+++.+.+.++... .+. ....+..+.....+|++|++++|||+
T Consensus 246 ~~~~~~~~~---~~~~~~yni~~g~~~s~~e~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~d~~k~~~~lGw~ 321 (348)
T PRK15181 246 LLSATTNDL---ASKNKVYNVAVGDRTSLNELYYLIRDGLNLWRNEQSRAEPI-YKDFRDGDVKHSQADITKIKTFLSYE 321 (348)
T ss_pred HHHHhcccc---cCCCCEEEecCCCcEeHHHHHHHHHHHhCcccccccCCCcc-cCCCCCCcccccccCHHHHHHHhCCC
Confidence 987754321 12458999999999999999999999997431 111 11223455667789999999999999
Q ss_pred ccCcHHHHHHHHHHHHHHH
Q 012176 424 PTTDLAAGLRKFVKWYVSY 442 (469)
Q Consensus 424 p~~~l~~~l~~~v~~~~~~ 442 (469)
|+++++|+|+++++|+..+
T Consensus 322 P~~sl~egl~~~~~w~~~~ 340 (348)
T PRK15181 322 PEFDIKEGLKQTLKWYIDK 340 (348)
T ss_pred CCCCHHHHHHHHHHHHHHh
Confidence 9999999999999999766
|
|
| >KOG1371 consensus UDP-glucose 4-epimerase/UDP-sulfoquinovose synthase [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-48 Score=368.60 Aligned_cols=320 Identities=45% Similarity=0.644 Sum_probs=288.2
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCccEE
Q 012176 118 GMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTHV 197 (469)
Q Consensus 118 ~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~d~V 197 (469)
.++||||||+||||+|.+.+|+++|++|+++|+...+..+.+++.+....+..++.++++|++|.+.++++|+..+||.|
T Consensus 2 ~~~VLVtGgaGyiGsht~l~L~~~gy~v~~vDNl~n~~~~sl~r~~~l~~~~~~v~f~~~Dl~D~~~L~kvF~~~~fd~V 81 (343)
T KOG1371|consen 2 GKHVLVTGGAGYIGSHTVLALLKRGYGVVIVDNLNNSYLESLKRVRQLLGEGKSVFFVEGDLNDAEALEKLFSEVKFDAV 81 (343)
T ss_pred CcEEEEecCCcceehHHHHHHHhCCCcEEEEecccccchhHHHHHHHhcCCCCceEEEEeccCCHHHHHHHHhhcCCceE
Confidence 47899999999999999999999999999999999999999999988888788999999999999999999999999999
Q ss_pred EEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcCccccCCCCCCCCCCCCCCCCCCChHHHHHHHH
Q 012176 198 LHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAG 277 (469)
Q Consensus 198 ih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y~~sK~~~ 277 (469)
+|+|+..++++++++|.++.+.|+.|+.+|++.|++++.+ .+||.||+.|||.....|++|++++..|.++|+.+|.+.
T Consensus 82 ~Hfa~~~~vgeS~~~p~~Y~~nNi~gtlnlLe~~~~~~~~-~~V~sssatvYG~p~~ip~te~~~t~~p~~pyg~tK~~i 160 (343)
T KOG1371|consen 82 MHFAALAAVGESMENPLSYYHNNIAGTLNLLEVMKAHNVK-ALVFSSSATVYGLPTKVPITEEDPTDQPTNPYGKTKKAI 160 (343)
T ss_pred EeehhhhccchhhhCchhheehhhhhHHHHHHHHHHcCCc-eEEEecceeeecCcceeeccCcCCCCCCCCcchhhhHHH
Confidence 9999999999999999999999999999999999999954 999999999999999999999999977999999999999
Q ss_pred HHHHHHHHHHhCCcEEEEeecceec--CCCCCCChHHHHHH----------------HHHcCCceEEEeeCCCCcceEec
Q 012176 278 EEIAHTYNHIYGLALTGLRFFTVYG--PWGRPDMAYFFFTK----------------DILQGKTIDVYKTQDDREVARDF 339 (469)
Q Consensus 278 E~~~~~~~~~~gi~~~ilRp~~v~G--p~~~~~~~~~~~~~----------------~~~~g~~~~~~~~~~~~~~~~~~ 339 (469)
|++++.+++.++..+++||.++++| |+++.++....+.. ...-|.+.... +++..+++
T Consensus 161 E~i~~d~~~~~~~~~~~LRyfn~~ga~p~Gr~ge~p~~~~nnl~p~v~~vaigr~~~l~v~g~d~~t~----dgt~vrdy 236 (343)
T KOG1371|consen 161 EEIIHDYNKAYGWKVTGLRYFNVIGAHPSGRIGEAPLGIPNNLLPYVFQVAIGRRPNLQVVGRDYTTI----DGTIVRDY 236 (343)
T ss_pred HHHHHhhhccccceEEEEEeccccCccccCccCCCCccCcccccccccchhhcccccceeecCccccc----CCCeeecc
Confidence 9999999999999999999999999 76654432221111 11223333332 45899999
Q ss_pred ccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCCcccHHHHHHHHHHHhCCCccceeecCCCCCCCCcccCChHHHHHh
Q 012176 340 TYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRNGDVPYTHANVSLAYKD 419 (469)
Q Consensus 340 v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~~vt~~el~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~d~~ka~~~ 419 (469)
+|+-|+|+.++.+++.... ....++||++++...++.+|+.++++.+|.+.++..++. +++|....+++.++++++
T Consensus 237 i~v~Dla~~h~~al~k~~~---~~~~~i~Nlgtg~g~~V~~lv~a~~k~~g~~~k~~~v~~-R~gdv~~~ya~~~~a~~e 312 (343)
T KOG1371|consen 237 IHVLDLADGHVAALGKLRG---AAEFGVYNLGTGKGSSVLELVTAFEKALGVKIKKKVVPR-RNGDVAFVYANPSKAQRE 312 (343)
T ss_pred eeeEehHHHHHHHhhcccc---chheeeEeecCCCCccHHHHHHHHHHHhcCCCCccccCC-CCCCceeeeeChHHHHHH
Confidence 9999999999999987642 355579999999999999999999999999999999998 999999999999999999
Q ss_pred cCCCccCcHHHHHHHHHHHHHHHcCCC
Q 012176 420 FGYKPTTDLAAGLRKFVKWYVSYYGIQ 446 (469)
Q Consensus 420 LG~~p~~~l~~~l~~~v~~~~~~~~~~ 446 (469)
|||+|.+++++++++++.|+.+++..+
T Consensus 313 lgwk~~~~iee~c~dlw~W~~~np~gy 339 (343)
T KOG1371|consen 313 LGWKAKYGLQEMLKDLWRWQKQNPSGY 339 (343)
T ss_pred hCCccccCHHHHHHHHHHHHhcCCCcC
Confidence 999999999999999999998887643
|
|
| >PLN02166 dTDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-46 Score=385.96 Aligned_cols=306 Identities=25% Similarity=0.355 Sum_probs=252.7
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCcc
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFT 195 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~d 195 (469)
...|+||||||+||||++|+++|+++|++|++++|........ ........+++++.+|+.+.. +.+ +|
T Consensus 118 ~~~mkILVTGatGFIGs~Lv~~Ll~~G~~V~~ldr~~~~~~~~----~~~~~~~~~~~~~~~Di~~~~-----~~~--~D 186 (436)
T PLN02166 118 RKRLRIVVTGGAGFVGSHLVDKLIGRGDEVIVIDNFFTGRKEN----LVHLFGNPRFELIRHDVVEPI-----LLE--VD 186 (436)
T ss_pred cCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCCCccHhH----hhhhccCCceEEEECcccccc-----ccC--CC
Confidence 4568999999999999999999999999999999854321111 111122347888999987643 344 49
Q ss_pred EEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcCccccCCCCCCCCCCCCC----CCCCCChHH
Q 012176 196 HVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHR----TDQPASLYA 271 (469)
Q Consensus 196 ~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~----~~~p~~~Y~ 271 (469)
+|||+|+.........++...++.|+.++.+|+++|++.+. +|||+||.+|||.....+.+|+.. +..|.+.|+
T Consensus 187 ~ViHlAa~~~~~~~~~~p~~~~~~Nv~gT~nLleaa~~~g~--r~V~~SS~~VYg~~~~~p~~E~~~~~~~p~~p~s~Yg 264 (436)
T PLN02166 187 QIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA--RFLLTSTSEVYGDPLEHPQKETYWGNVNPIGERSCYD 264 (436)
T ss_pred EEEECceeccchhhccCHHHHHHHHHHHHHHHHHHHHHhCC--EEEEECcHHHhCCCCCCCCCccccccCCCCCCCCchH
Confidence 99999998665555567889999999999999999999884 899999999999766667777641 225678899
Q ss_pred HHHHHHHHHHHHHHHHhCCcEEEEeecceecCCCCC--CChHHHHHHHHHcCCceEEEeeCCCCcceEecccHHHHHHHH
Q 012176 272 ATKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRP--DMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGC 349 (469)
Q Consensus 272 ~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~Gp~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~~~ 349 (469)
.+|.++|++++.+++.++++++++||++||||+... ...+..++.++.+++++.++ +++++.++|+||+|+++++
T Consensus 265 ~SK~~aE~~~~~y~~~~~l~~~ilR~~~vYGp~~~~~~~~~i~~~i~~~l~~~~i~v~---g~g~~~rdfi~V~Dva~ai 341 (436)
T PLN02166 265 EGKRTAETLAMDYHRGAGVEVRIARIFNTYGPRMCLDDGRVVSNFVAQTIRKQPMTVY---GDGKQTRSFQYVSDLVDGL 341 (436)
T ss_pred HHHHHHHHHHHHHHHHhCCCeEEEEEccccCCCCCCCccchHHHHHHHHhcCCCcEEe---CCCCeEEeeEEHHHHHHHH
Confidence 999999999999998889999999999999997542 34667889999999999888 6788999999999999999
Q ss_pred HHHhccCCCCCCCCCceEEEeCCCCcccHHHHHHHHHHHhCCCccceeecCCCCCCCCcccCChHHHHHhcCCCccCcHH
Q 012176 350 VGATGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRNGDVPYTHANVSLAYKDFGYKPTTDLA 429 (469)
Q Consensus 350 ~~~~~~~~~~~~~~~~~iyni~~~~~vt~~el~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~~l~ 429 (469)
+.++++.. +++||+++++.+|+.|+++.+.+.+|.+..+...+. ...+.....+|++|++++|||+|+++++
T Consensus 342 ~~~~~~~~-------~giyNIgs~~~~Si~ela~~I~~~~g~~~~i~~~p~-~~~~~~~~~~d~~Ka~~~LGw~P~~sl~ 413 (436)
T PLN02166 342 VALMEGEH-------VGPFNLGNPGEFTMLELAEVVKETIDSSATIEFKPN-TADDPHKRKPDISKAKELLNWEPKISLR 413 (436)
T ss_pred HHHHhcCC-------CceEEeCCCCcEeHHHHHHHHHHHhCCCCCeeeCCC-CCCCccccccCHHHHHHHcCCCCCCCHH
Confidence 99986531 279999999999999999999999998776655543 3455666789999999999999999999
Q ss_pred HHHHHHHHHHHHHcCC
Q 012176 430 AGLRKFVKWYVSYYGI 445 (469)
Q Consensus 430 ~~l~~~v~~~~~~~~~ 445 (469)
++|+++++||+.....
T Consensus 414 egl~~~i~~~~~~~~~ 429 (436)
T PLN02166 414 EGLPLMVSDFRNRILN 429 (436)
T ss_pred HHHHHHHHHHHHHhcC
Confidence 9999999999887654
|
|
| >PLN02206 UDP-glucuronate decarboxylase | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-46 Score=381.67 Aligned_cols=304 Identities=26% Similarity=0.376 Sum_probs=250.6
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCcc
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFT 195 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~d 195 (469)
.++|+||||||+||||++|+++|+++|++|++++|..... ...........+++++.+|+.+.. +.++ |
T Consensus 117 ~~~~kILVTGatGfIGs~Lv~~Ll~~G~~V~~ld~~~~~~----~~~~~~~~~~~~~~~i~~D~~~~~-----l~~~--D 185 (442)
T PLN02206 117 RKGLRVVVTGGAGFVGSHLVDRLMARGDSVIVVDNFFTGR----KENVMHHFSNPNFELIRHDVVEPI-----LLEV--D 185 (442)
T ss_pred cCCCEEEEECcccHHHHHHHHHHHHCcCEEEEEeCCCccc----hhhhhhhccCCceEEEECCccChh-----hcCC--C
Confidence 4679999999999999999999999999999998753211 111112233457889999987753 3444 9
Q ss_pred EEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcCccccCCCCCCCCCCCCC----CCCCCChHH
Q 012176 196 HVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHR----TDQPASLYA 271 (469)
Q Consensus 196 ~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~----~~~p~~~Y~ 271 (469)
+|||+|+...+.....++...+++|+.++.+|+++|++.+. +|||+||..+||.....+.+|+.. +..+.+.|+
T Consensus 186 ~ViHlAa~~~~~~~~~~p~~~~~~Nv~gt~nLleaa~~~g~--r~V~~SS~~VYg~~~~~p~~E~~~~~~~P~~~~s~Y~ 263 (442)
T PLN02206 186 QIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA--RFLLTSTSEVYGDPLQHPQVETYWGNVNPIGVRSCYD 263 (442)
T ss_pred EEEEeeeecchhhhhcCHHHHHHHHHHHHHHHHHHHHHhCC--EEEEECChHHhCCCCCCCCCccccccCCCCCccchHH
Confidence 99999998665555567889999999999999999999984 899999999998776667777642 224568899
Q ss_pred HHHHHHHHHHHHHHHHhCCcEEEEeecceecCCCC--CCChHHHHHHHHHcCCceEEEeeCCCCcceEecccHHHHHHHH
Q 012176 272 ATKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGR--PDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGC 349 (469)
Q Consensus 272 ~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~Gp~~~--~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~~~ 349 (469)
.+|.++|+++..+.+.++++++++||++||||+.. ....+..++..+..++++.++ +++++.++|+||+|+|+++
T Consensus 264 ~SK~~aE~~~~~y~~~~g~~~~ilR~~~vyGp~~~~~~~~~v~~~i~~~l~~~~i~i~---g~G~~~rdfi~V~Dva~ai 340 (442)
T PLN02206 264 EGKRTAETLTMDYHRGANVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVY---GDGKQTRSFQFVSDLVEGL 340 (442)
T ss_pred HHHHHHHHHHHHHHHHhCCCeEEEEeccccCCCCCccccchHHHHHHHHHcCCCcEEe---CCCCEEEeEEeHHHHHHHH
Confidence 99999999999998888999999999999999753 334567888889999999888 6788999999999999999
Q ss_pred HHHhccCCCCCCCCCceEEEeCCCCcccHHHHHHHHHHHhCCCccceeecCCCCCCCCcccCChHHHHHhcCCCccCcHH
Q 012176 350 VGATGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRNGDVPYTHANVSLAYKDFGYKPTTDLA 429 (469)
Q Consensus 350 ~~~~~~~~~~~~~~~~~iyni~~~~~vt~~el~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~~l~ 429 (469)
+.++++.. +++|||++++.+|+.|+++.+.+.+|.+..+...+. ...+.....+|++|++++|||+|+++|+
T Consensus 341 ~~a~e~~~-------~g~yNIgs~~~~sl~Elae~i~~~~g~~~~i~~~p~-~~~~~~~~~~d~sKa~~~LGw~P~~~l~ 412 (442)
T PLN02206 341 MRLMEGEH-------VGPFNLGNPGEFTMLELAKVVQETIDPNAKIEFRPN-TEDDPHKRKPDITKAKELLGWEPKVSLR 412 (442)
T ss_pred HHHHhcCC-------CceEEEcCCCceeHHHHHHHHHHHhCCCCceeeCCC-CCCCccccccCHHHHHHHcCCCCCCCHH
Confidence 99986531 269999999999999999999999997766555443 2345556778999999999999999999
Q ss_pred HHHHHHHHHHHHHc
Q 012176 430 AGLRKFVKWYVSYY 443 (469)
Q Consensus 430 ~~l~~~v~~~~~~~ 443 (469)
|+|+++++||++..
T Consensus 413 egl~~~~~~~~~~~ 426 (442)
T PLN02206 413 QGLPLMVKDFRQRV 426 (442)
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999998754
|
|
| >TIGR01472 gmd GDP-mannose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-44 Score=359.09 Aligned_cols=312 Identities=21% Similarity=0.250 Sum_probs=252.1
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCCh-hHHHHHHHh--hccCCeEEEEecCCCHHHHHHhhccCCcc
Q 012176 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDP-SLKRARQKL--LQKHQVFIVEGDLNDAPLLTKLFDVVPFT 195 (469)
Q Consensus 119 ~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~-~~~~~~~~~--~~~~~v~~v~~Dl~d~~~l~~~~~~~~~d 195 (469)
|+||||||+||||++|+++|+++|++|++++|....... ......... ....+++++.+|++|.+.+.+++++.++|
T Consensus 1 ~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~~~d 80 (343)
T TIGR01472 1 KIALITGITGQDGSYLAEFLLEKGYEVHGLIRRSSSFNTQRIEHIYEDPHNVNKARMKLHYGDLTDSSNLRRIIDEIKPT 80 (343)
T ss_pred CeEEEEcCCCcHHHHHHHHHHHCCCEEEEEecCCcccchhhhhhhhhccccccccceeEEEeccCCHHHHHHHHHhCCCC
Confidence 589999999999999999999999999999997542111 111110000 01236899999999999999999988889
Q ss_pred EEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCC--CeEEEEcCccccCCCCCCCCCCCCCCCCCCChHHHH
Q 012176 196 HVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQ--PSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAAT 273 (469)
Q Consensus 196 ~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~--~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y~~s 273 (469)
+|||+|+.........++...+++|+.|+.+++++|++.+.+ .+|||+||.++||.....+.+|+.+. .|.+.|+.+
T Consensus 81 ~ViH~Aa~~~~~~~~~~~~~~~~~n~~gt~~ll~a~~~~~~~~~~~~v~~SS~~vyg~~~~~~~~E~~~~-~p~~~Y~~s 159 (343)
T TIGR01472 81 EIYNLAAQSHVKVSFEIPEYTADVDGIGTLRLLEAVRTLGLIKSVKFYQASTSELYGKVQEIPQNETTPF-YPRSPYAAA 159 (343)
T ss_pred EEEECCcccccchhhhChHHHHHHHHHHHHHHHHHHHHhCCCcCeeEEEeccHHhhCCCCCCCCCCCCCC-CCCChhHHH
Confidence 999999986655455567788899999999999999988764 38999999999997666678888776 788999999
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEeecceecCCCCCC---ChHHHHHHHHHcCCce-EEEeeCCCCcceEecccHHHHHHHH
Q 012176 274 KKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPD---MAYFFFTKDILQGKTI-DVYKTQDDREVARDFTYIDDVVKGC 349 (469)
Q Consensus 274 K~~~E~~~~~~~~~~gi~~~ilRp~~v~Gp~~~~~---~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~v~v~Dva~~~ 349 (469)
|.++|.+++.+++.+|+++++.|+.++|||+.... ..+..++..+..|++. .++ +++++.++|+||+|+|+++
T Consensus 160 K~~~e~~~~~~~~~~~~~~~~~~~~~~~gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~---g~g~~~rd~i~V~D~a~a~ 236 (343)
T TIGR01472 160 KLYAHWITVNYREAYGLFAVNGILFNHESPRRGENFVTRKITRAAAKIKLGLQEKLYL---GNLDAKRDWGHAKDYVEAM 236 (343)
T ss_pred HHHHHHHHHHHHHHhCCceEEEeecccCCCCCCccccchHHHHHHHHHHcCCCCceee---CCCccccCceeHHHHHHHH
Confidence 99999999999998999999999999999975432 2334556667777644 344 6788999999999999999
Q ss_pred HHHhccCCCCCCCCCceEEEeCCCCcccHHHHHHHHHHHhCCCccce------------------eec--CCCCCCCCcc
Q 012176 350 VGATGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKH------------------VIR--MPRNGDVPYT 409 (469)
Q Consensus 350 ~~~~~~~~~~~~~~~~~iyni~~~~~vt~~el~~~i~~~~g~~~~~~------------------~~~--~~~~~~~~~~ 409 (469)
+.+++++. +++|||++++++|+.|+++.+.+.+|++..+. ... ..+.++....
T Consensus 237 ~~~~~~~~-------~~~yni~~g~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (343)
T TIGR01472 237 WLMLQQDK-------PDDYVIATGETHSVREFVEVSFEYIGKTLNWKDKGINEVGRCKETGKVHVEIDPRYFRPTEVDLL 309 (343)
T ss_pred HHHHhcCC-------CccEEecCCCceeHHHHHHHHHHHcCCCcccccccccccccccccCceeEEeCccccCCCccchh
Confidence 99987642 26899999999999999999999999764321 111 1245667777
Q ss_pred cCChHHHHHhcCCCccCcHHHHHHHHHHHHHH
Q 012176 410 HANVSLAYKDFGYKPTTDLAAGLRKFVKWYVS 441 (469)
Q Consensus 410 ~~d~~ka~~~LG~~p~~~l~~~l~~~v~~~~~ 441 (469)
..|++|++++|||+|+++++|+|+++++|+++
T Consensus 310 ~~d~~k~~~~lgw~p~~~l~egi~~~~~~~~~ 341 (343)
T TIGR01472 310 LGDATKAKEKLGWKPEVSFEKLVKEMVEEDLE 341 (343)
T ss_pred cCCHHHHHHhhCCCCCCCHHHHHHHHHHHHHh
Confidence 88999999999999999999999999999874
|
Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116). |
| >PLN02572 UDP-sulfoquinovose synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-43 Score=366.67 Aligned_cols=321 Identities=23% Similarity=0.301 Sum_probs=250.9
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCCh------hH------HHHHHH--hhccCCeEEEEecCC
Q 012176 115 RPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDP------SL------KRARQK--LLQKHQVFIVEGDLN 180 (469)
Q Consensus 115 ~~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~------~~------~~~~~~--~~~~~~v~~v~~Dl~ 180 (469)
..++|+||||||+||||++|+++|+++|++|++++|....... .. ...... .....+++++.+|++
T Consensus 44 ~~~~k~VLVTGatGfIGs~Lv~~L~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~Dl~ 123 (442)
T PLN02572 44 SSKKKKVMVIGGDGYCGWATALHLSKRGYEVAIVDNLCRRLFDHQLGLDSLTPIASIHERVRRWKEVSGKEIELYVGDIC 123 (442)
T ss_pred cccCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEeccccccccccccccccccccchHHHHHHHHHhhCCcceEEECCCC
Confidence 4677899999999999999999999999999999864321100 00 000000 011236899999999
Q ss_pred CHHHHHHhhccCCccEEEEcccccChhhhccCh---HHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcCccccCCCCCCCC
Q 012176 181 DAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNP---QSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPF 257 (469)
Q Consensus 181 d~~~l~~~~~~~~~d~Vih~Aa~~~~~~~~~~~---~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS~~vyg~~~~~~~ 257 (469)
|.+.+.+++++.++|+|||+|+.........++ +..+++|+.|+.+++++|++.+++.+||++||.++||... .++
T Consensus 124 d~~~v~~~l~~~~~D~ViHlAa~~~~~~~~~~~~~~~~~~~~Nv~gt~nlleaa~~~gv~~~~V~~SS~~vYG~~~-~~~ 202 (442)
T PLN02572 124 DFEFLSEAFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAIKEFAPDCHLVKLGTMGEYGTPN-IDI 202 (442)
T ss_pred CHHHHHHHHHhCCCCEEEECCCcccChhhhcChhhHHHHHHHHHHHHHHHHHHHHHhCCCccEEEEecceecCCCC-CCC
Confidence 999999999987789999999875544444443 4567899999999999999998755899999999998542 233
Q ss_pred CC-----------CC--CCCCCCChHHHHHHHHHHHHHHHHHHhCCcEEEEeecceecCCCCCC----------------
Q 012176 258 SE-----------SH--RTDQPASLYAATKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPD---------------- 308 (469)
Q Consensus 258 ~E-----------~~--~~~~p~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~Gp~~~~~---------------- 308 (469)
+| ++ .+..|.++|+.+|.++|.+++.+++.+|++++++||++||||+....
T Consensus 203 ~E~~i~~~~~~~e~~~~~~~~P~s~Yg~SK~a~E~l~~~~~~~~gl~~v~lR~~~vyGp~~~~~~~~~~li~~~~~~~~~ 282 (442)
T PLN02572 203 EEGYITITHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETMMDEELINRLDYDGVF 282 (442)
T ss_pred cccccccccccccccccCCCCCCCcchhHHHHHHHHHHHHHHhcCCCEEEEecccccCCCCcccccccccccccCcccch
Confidence 22 22 13367789999999999999999999999999999999999986431
Q ss_pred -ChHHHHHHHHHcCCceEEEeeCCCCcceEecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCCcccHHHHHHHHHH
Q 012176 309 -MAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILEN 387 (469)
Q Consensus 309 -~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~~vt~~el~~~i~~ 387 (469)
..+..++..+..|+++.++ +++++.++|+||+|+|++++.++++... .....+||+++ +.+|+.|+++.+.+
T Consensus 283 ~~~i~~~~~~~~~g~~i~v~---g~G~~~Rdfi~V~Dva~a~~~al~~~~~---~g~~~i~Nigs-~~~si~el~~~i~~ 355 (442)
T PLN02572 283 GTALNRFCVQAAVGHPLTVY---GKGGQTRGFLDIRDTVRCIEIAIANPAK---PGEFRVFNQFT-EQFSVNELAKLVTK 355 (442)
T ss_pred hhHHHHHHHHHhcCCCceec---CCCCEEECeEEHHHHHHHHHHHHhChhh---cCceeEEEeCC-CceeHHHHHHHHHH
Confidence 3456777888889988888 7789999999999999999999876421 11236899987 57999999999999
Q ss_pred H---hCCCccceeecCC-CCCCCCcccCChHHHHHhcCCCccC---cHHHHHHHHHHHHHHHcC
Q 012176 388 L---LNTKAKKHVIRMP-RNGDVPYTHANVSLAYKDFGYKPTT---DLAAGLRKFVKWYVSYYG 444 (469)
Q Consensus 388 ~---~g~~~~~~~~~~~-~~~~~~~~~~d~~ka~~~LG~~p~~---~l~~~l~~~v~~~~~~~~ 444 (469)
. +|.+..+...+.+ ...+.....+|.+|++ +|||+|++ +++++|.++++||+..-.
T Consensus 356 ~~~~~g~~~~~~~~p~~~~~~~~~~~~~d~~k~~-~LGw~p~~~~~~l~~~l~~~~~~~~~~~~ 418 (442)
T PLN02572 356 AGEKLGLDVEVISVPNPRVEAEEHYYNAKHTKLC-ELGLEPHLLSDSLLDSLLNFAVKYKDRVD 418 (442)
T ss_pred HHHhhCCCCCeeeCCCCcccccccccCccHHHHH-HcCCCCCCcHHHHHHHHHHHHHHHHhhcc
Confidence 9 8877666655544 2334456778999997 59999999 899999999999985543
|
|
| >PRK10217 dTDP-glucose 4,6-dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-43 Score=357.68 Aligned_cols=313 Identities=24% Similarity=0.384 Sum_probs=252.1
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCccEEE
Q 012176 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTHVL 198 (469)
Q Consensus 119 ~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~d~Vi 198 (469)
|+||||||+||||++++++|+++|++|+++.+...... ..... .......+++++.+|++|.+.+++++++.++|+||
T Consensus 2 ~~vlVtGatGfIG~~l~~~L~~~g~~~v~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~D~Vi 79 (355)
T PRK10217 2 RKILITGGAGFIGSALVRYIINETSDAVVVVDKLTYAG-NLMSL-APVAQSERFAFEKVDICDRAELARVFTEHQPDCVM 79 (355)
T ss_pred cEEEEEcCCcHHHHHHHHHHHHcCCCEEEEEecCcccc-chhhh-hhcccCCceEEEECCCcChHHHHHHHhhcCCCEEE
Confidence 68999999999999999999999988654433221111 11111 11112236888999999999999999976779999
Q ss_pred EcccccChhhhccChHHHHHHHHHHHHHHHHHHHhc---------CCCCeEEEEcCccccCCCC--CCCCCCCCCCCCCC
Q 012176 199 HLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSV---------NPQPSIVWASSSSVYGLNT--QVPFSESHRTDQPA 267 (469)
Q Consensus 199 h~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~---------~~~~~~V~~SS~~vyg~~~--~~~~~E~~~~~~p~ 267 (469)
|+||........++++.++++|+.++.+++++|++. +++ +||++||.++||... ..+++|+.+. .|.
T Consensus 80 h~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~a~~~~~~~~~~~~~~~~-~~i~~SS~~vyg~~~~~~~~~~E~~~~-~p~ 157 (355)
T PRK10217 80 HLAAESHVDRSIDGPAAFIETNIVGTYTLLEAARAYWNALTEDKKSAF-RFHHISTDEVYGDLHSTDDFFTETTPY-APS 157 (355)
T ss_pred ECCcccCcchhhhChHHHHHHhhHHHHHHHHHHHHhhhcccccccCce-EEEEecchhhcCCCCCCCCCcCCCCCC-CCC
Confidence 999986655455677889999999999999999863 343 899999999998542 3467887765 688
Q ss_pred ChHHHHHHHHHHHHHHHHHHhCCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceEecccHHHHHH
Q 012176 268 SLYAATKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVK 347 (469)
Q Consensus 268 ~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~ 347 (469)
+.|+.+|.++|.+++.++++++++++++||++||||+..+..++..++..+..++++.++ +++++.++|+||+|+|+
T Consensus 158 s~Y~~sK~~~e~~~~~~~~~~~~~~~i~r~~~v~Gp~~~~~~~~~~~~~~~~~~~~~~~~---g~g~~~~~~i~v~D~a~ 234 (355)
T PRK10217 158 SPYSASKASSDHLVRAWLRTYGLPTLITNCSNNYGPYHFPEKLIPLMILNALAGKPLPVY---GNGQQIRDWLYVEDHAR 234 (355)
T ss_pred ChhHHHHHHHHHHHHHHHHHhCCCeEEEeeeeeeCCCCCcccHHHHHHHHHhcCCCceEe---CCCCeeeCcCcHHHHHH
Confidence 999999999999999999889999999999999999886666777888888889888887 67899999999999999
Q ss_pred HHHHHhccCCCCCCCCCceEEEeCCCCcccHHHHHHHHHHHhCCCccce-----------eecCCCCCCCCcccCChHHH
Q 012176 348 GCVGATGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKH-----------VIRMPRNGDVPYTHANVSLA 416 (469)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~iyni~~~~~vt~~el~~~i~~~~g~~~~~~-----------~~~~~~~~~~~~~~~d~~ka 416 (469)
+++.+++.. ..+++|||++++++|+.|+++.+.+.+|...... .....+.++...+.+|++|+
T Consensus 235 a~~~~~~~~------~~~~~yni~~~~~~s~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~ 308 (355)
T PRK10217 235 ALYCVATTG------KVGETYNIGGHNERKNLDVVETICELLEELAPNKPQGVAHYRDLITFVADRPGHDLRYAIDASKI 308 (355)
T ss_pred HHHHHHhcC------CCCCeEEeCCCCcccHHHHHHHHHHHhcccccccccccccccccceecCCCCCCCcccccCHHHH
Confidence 999998763 2348999999999999999999999998532111 01112334456678999999
Q ss_pred HHhcCCCccCcHHHHHHHHHHHHHHHcC
Q 012176 417 YKDFGYKPTTDLAAGLRKFVKWYVSYYG 444 (469)
Q Consensus 417 ~~~LG~~p~~~l~~~l~~~v~~~~~~~~ 444 (469)
+++|||+|+++++|+|+++++||.....
T Consensus 309 ~~~lg~~p~~~l~e~l~~~~~~~~~~~~ 336 (355)
T PRK10217 309 ARELGWLPQETFESGMRKTVQWYLANES 336 (355)
T ss_pred HHhcCCCCcCcHHHHHHHHHHHHHhCHH
Confidence 9999999999999999999999988744
|
|
| >PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-43 Score=353.60 Aligned_cols=308 Identities=22% Similarity=0.333 Sum_probs=249.6
Q ss_pred CEEEEEcCCChhHHHHHHHHHHC-CCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCC-CHHHHHHhhccCCccE
Q 012176 119 MTVLVTGAAGFVGSHCSLALKKR-GDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLN-DAPLLTKLFDVVPFTH 196 (469)
Q Consensus 119 ~~VlVtGatG~IG~~l~~~L~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~-d~~~l~~~~~~~~~d~ 196 (469)
|+||||||+||||++|+++|+++ |++|++++|... . ........+++++.+|+. +.+.+.++++++ |+
T Consensus 2 ~~ilVtGatGfiGs~l~~~L~~~~~~~V~~~~r~~~-------~-~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~--d~ 71 (347)
T PRK11908 2 KKVLILGVNGFIGHHLSKRILETTDWEVYGMDMQTD-------R-LGDLVNHPRMHFFEGDITINKEWIEYHVKKC--DV 71 (347)
T ss_pred cEEEEECCCcHHHHHHHHHHHhCCCCeEEEEeCcHH-------H-HHHhccCCCeEEEeCCCCCCHHHHHHHHcCC--CE
Confidence 68999999999999999999987 799999998321 1 112223347999999997 778888888876 99
Q ss_pred EEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcCccccCCCCCCCCCCCCCC------CCCCChH
Q 012176 197 VLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRT------DQPASLY 270 (469)
Q Consensus 197 Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~------~~p~~~Y 270 (469)
|||+|+...+.....++...+++|+.++.+++++|++.+ + +|||+||..+||.....+++|++++ ..|.+.|
T Consensus 72 ViH~aa~~~~~~~~~~p~~~~~~n~~~~~~ll~aa~~~~-~-~~v~~SS~~vyg~~~~~~~~ee~~~~~~~~~~~p~~~Y 149 (347)
T PRK11908 72 ILPLVAIATPATYVKQPLRVFELDFEANLPIVRSAVKYG-K-HLVFPSTSEVYGMCPDEEFDPEASPLVYGPINKPRWIY 149 (347)
T ss_pred EEECcccCChHHhhcCcHHHHHHHHHHHHHHHHHHHhcC-C-eEEEEecceeeccCCCcCcCccccccccCcCCCccchH
Confidence 999999765554567888899999999999999999887 4 9999999999997655577776542 2456789
Q ss_pred HHHHHHHHHHHHHHHHHhCCcEEEEeecceecCCCCC--------CChHHHHHHHHHcCCceEEEeeCCCCcceEecccH
Q 012176 271 AATKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRP--------DMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYI 342 (469)
Q Consensus 271 ~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~Gp~~~~--------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v 342 (469)
+.+|.++|++++.++..++++++++||++||||+..+ ..++..++..+..|+++.+. +++++.++|+|+
T Consensus 150 ~~sK~~~e~~~~~~~~~~~~~~~ilR~~~v~Gp~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~---~~g~~~r~~i~v 226 (347)
T PRK11908 150 ACSKQLMDRVIWAYGMEEGLNFTLFRPFNWIGPGLDSIYTPKEGSSRVVTQFLGHIVRGEPISLV---DGGSQKRAFTDI 226 (347)
T ss_pred HHHHHHHHHHHHHHHHHcCCCeEEEeeeeeeCCCccCCCccccCCcchHHHHHHHHhCCCceEEe---cCCceeeccccH
Confidence 9999999999999998889999999999999997532 34567888889999998877 668899999999
Q ss_pred HHHHHHHHHHhccCCCCCCCCCceEEEeCCC-CcccHHHHHHHHHHHhCCCcccee-------ecCC-------CCCCCC
Q 012176 343 DDVVKGCVGATGSGGKKRGPAQLRVYNLGNT-SPVPVGRLVSILENLLNTKAKKHV-------IRMP-------RNGDVP 407 (469)
Q Consensus 343 ~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~-~~vt~~el~~~i~~~~g~~~~~~~-------~~~~-------~~~~~~ 407 (469)
+|++++++.+++++.. ...+++||++++ ..+|+.|+++.+.+.+|..+.... ...+ ...+..
T Consensus 227 ~D~a~a~~~~~~~~~~---~~~g~~yni~~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (347)
T PRK11908 227 DDGIDALMKIIENKDG---VASGKIYNIGNPKNNHSVRELANKMLELAAEYPEYAESAKKVKLVETTSGAYYGKGYQDVQ 303 (347)
T ss_pred HHHHHHHHHHHhCccc---cCCCCeEEeCCCCCCcCHHHHHHHHHHHhcCcccccccccccccccCCchhccCcCcchhc
Confidence 9999999999987521 134589999997 589999999999999996543311 1111 112334
Q ss_pred cccCChHHHHHhcCCCccCcHHHHHHHHHHHHHHHcC
Q 012176 408 YTHANVSLAYKDFGYKPTTDLAAGLRKFVKWYVSYYG 444 (469)
Q Consensus 408 ~~~~d~~ka~~~LG~~p~~~l~~~l~~~v~~~~~~~~ 444 (469)
....|++|++++|||+|+++++++|+++++|++++..
T Consensus 304 ~~~~d~~k~~~~lGw~p~~~l~~~l~~~~~~~~~~~~ 340 (347)
T PRK11908 304 NRVPKIDNTMQELGWAPKTTMDDALRRIFEAYRGHVA 340 (347)
T ss_pred cccCChHHHHHHcCCCCCCcHHHHHHHHHHHHHHHHH
Confidence 5567899999999999999999999999999987654
|
|
| >PLN02427 UDP-apiose/xylose synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-43 Score=357.96 Aligned_cols=315 Identities=20% Similarity=0.288 Sum_probs=245.4
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHC-CCcEEEEeCCCCCCChhHHHHHHHh--hccCCeEEEEecCCCHHHHHHhhccC
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKR-GDGVLGLDNFNSYYDPSLKRARQKL--LQKHQVFIVEGDLNDAPLLTKLFDVV 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~-G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~v~~v~~Dl~d~~~l~~~~~~~ 192 (469)
.+.|+||||||+||||++|+++|+++ |++|++++|..... ....... ....+++++.+|+.|.+.+.++++++
T Consensus 12 ~~~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~r~~~~~----~~l~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~ 87 (386)
T PLN02427 12 IKPLTICMIGAGGFIGSHLCEKLMTETPHKVLALDVYNDKI----KHLLEPDTVPWSGRIQFHRINIKHDSRLEGLIKMA 87 (386)
T ss_pred ccCcEEEEECCcchHHHHHHHHHHhcCCCEEEEEecCchhh----hhhhccccccCCCCeEEEEcCCCChHHHHHHhhcC
Confidence 45689999999999999999999998 59999999854311 1100000 01237999999999999999999876
Q ss_pred CccEEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcCccccCCCCCCCCCCCCCC---------
Q 012176 193 PFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRT--------- 263 (469)
Q Consensus 193 ~~d~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~--------- 263 (469)
|+|||+|+.........++...+..|+.++.+++++|++.+ + +|||+||.++||.....+.+|+.+.
T Consensus 88 --d~ViHlAa~~~~~~~~~~~~~~~~~n~~gt~~ll~aa~~~~-~-r~v~~SS~~vYg~~~~~~~~e~~p~~~~~~~~~~ 163 (386)
T PLN02427 88 --DLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENN-K-RLIHFSTCEVYGKTIGSFLPKDHPLRQDPAFYVL 163 (386)
T ss_pred --CEEEEcccccChhhhhhChHHHHHHHHHHHHHHHHHHHhcC-C-EEEEEeeeeeeCCCcCCCCCcccccccccccccc
Confidence 99999999765433345666777889999999999999887 4 9999999999986543333332211
Q ss_pred ------------CCCCChHHHHHHHHHHHHHHHHHHhCCcEEEEeecceecCCCCC-----------CChHHHHHHHHHc
Q 012176 264 ------------DQPASLYAATKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRP-----------DMAYFFFTKDILQ 320 (469)
Q Consensus 264 ------------~~p~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~Gp~~~~-----------~~~~~~~~~~~~~ 320 (469)
..+.+.|+.+|.++|+++..+++.+|++++++||++||||+... ...+..++..+..
T Consensus 164 ~e~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~g~~~~ilR~~~vyGp~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 243 (386)
T PLN02427 164 KEDESPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLR 243 (386)
T ss_pred cccccccccCCCCccccchHHHHHHHHHHHHHHHhhcCCceEEecccceeCCCCCccccccccccccchHHHHHHHHHhc
Confidence 12446899999999999999988889999999999999997531 1244566778888
Q ss_pred CCceEEEeeCCCCcceEecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCC-CcccHHHHHHHHHHHhCCCcc-----
Q 012176 321 GKTIDVYKTQDDREVARDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNT-SPVPVGRLVSILENLLNTKAK----- 394 (469)
Q Consensus 321 g~~~~~~~~~~~~~~~~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~-~~vt~~el~~~i~~~~g~~~~----- 394 (469)
++++.++ +++++.++|+||+|+|++++.+++++. ...+++||++++ +.+++.|+++.+.+.+|....
T Consensus 244 ~~~~~~~---g~g~~~r~~i~V~Dva~ai~~al~~~~----~~~g~~yni~~~~~~~s~~el~~~i~~~~g~~~~~~~~~ 316 (386)
T PLN02427 244 REPLKLV---DGGQSQRTFVYIKDAIEAVLLMIENPA----RANGHIFNVGNPNNEVTVRQLAEMMTEVYAKVSGEPALE 316 (386)
T ss_pred CCCeEEE---CCCCceECcEeHHHHHHHHHHHHhCcc----cccCceEEeCCCCCCccHHHHHHHHHHHhcccccccccc
Confidence 9998887 668889999999999999999998652 123589999997 589999999999999985211
Q ss_pred ce--eecC-----CCCCCCCcccCChHHHHHhcCCCccCcHHHHHHHHHHHHHHHcCC
Q 012176 395 KH--VIRM-----PRNGDVPYTHANVSLAYKDFGYKPTTDLAAGLRKFVKWYVSYYGI 445 (469)
Q Consensus 395 ~~--~~~~-----~~~~~~~~~~~d~~ka~~~LG~~p~~~l~~~l~~~v~~~~~~~~~ 445 (469)
.. ..+. +...+......|.+|++++|||+|+++++++|+++++|+++.|..
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lGw~p~~~l~~gl~~~~~~~~~~~~~ 374 (386)
T PLN02427 317 EPTVDVSSKEFYGEGYDDSDKRIPDMTIINKQLGWNPKTSLWDLLESTLTYQHKTYAE 374 (386)
T ss_pred ccccccCcccccCccccchhhccCCHHHHHHhcCCCcCccHHHHHHHHHHHHHHHHHH
Confidence 11 1111 011345567789999999999999999999999999999998753
|
|
| >PLN02653 GDP-mannose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-42 Score=349.46 Aligned_cols=318 Identities=21% Similarity=0.229 Sum_probs=257.1
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCC-hhHHHHHHH-hhccCCeEEEEecCCCHHHHHHhhccCC
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYD-PSLKRARQK-LLQKHQVFIVEGDLNDAPLLTKLFDVVP 193 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~-~~~~~~~~~-~~~~~~v~~v~~Dl~d~~~l~~~~~~~~ 193 (469)
.++|+||||||+||||++|+++|+++|++|++++|...... ..+...... .....++.++.+|++|.+.+.++++..+
T Consensus 4 ~~~~~vlVTGatGfiG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~ 83 (340)
T PLN02653 4 PPRKVALITGITGQDGSYLTEFLLSKGYEVHGIIRRSSNFNTQRLDHIYIDPHPNKARMKLHYGDLSDASSLRRWLDDIK 83 (340)
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHCCCEEEEEecccccccccchhhhccccccccCceEEEEecCCCHHHHHHHHHHcC
Confidence 45789999999999999999999999999999998654211 111111100 0112368999999999999999999888
Q ss_pred ccEEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCC----CeEEEEcCccccCCCCCCCCCCCCCCCCCCCh
Q 012176 194 FTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQ----PSIVWASSSSVYGLNTQVPFSESHRTDQPASL 269 (469)
Q Consensus 194 ~d~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~----~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~ 269 (469)
+|+|||+||.........++...+++|+.++.+++++|++.+.. .+||++||.++||.... +++|+++. .|.+.
T Consensus 84 ~d~Vih~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~~~~~~~~~~~v~~Ss~~vyg~~~~-~~~E~~~~-~p~~~ 161 (340)
T PLN02653 84 PDEVYNLAAQSHVAVSFEMPDYTADVVATGALRLLEAVRLHGQETGRQIKYYQAGSSEMYGSTPP-PQSETTPF-HPRSP 161 (340)
T ss_pred CCEEEECCcccchhhhhhChhHHHHHHHHHHHHHHHHHHHhccccccceeEEEeccHHHhCCCCC-CCCCCCCC-CCCCh
Confidence 89999999986655555677888899999999999999988864 28999999999997665 78888776 78899
Q ss_pred HHHHHHHHHHHHHHHHHHhCCcEEEEeecceecCCCCCCC---hHHHHHHHHHcCCceEEEeeCCCCcceEecccHHHHH
Q 012176 270 YAATKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPDM---AYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVV 346 (469)
Q Consensus 270 Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~Gp~~~~~~---~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva 346 (469)
|+.+|.++|.+++.++.++++.++..|+.++|||+..... .+..++..+..+.++.++. +++++.++|+|++|+|
T Consensus 162 Y~~sK~~~e~~~~~~~~~~~~~~~~~~~~~~~gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~g~~~rd~i~v~D~a 239 (340)
T PLN02653 162 YAVAKVAAHWYTVNYREAYGLFACNGILFNHESPRRGENFVTRKITRAVGRIKVGLQKKLFL--GNLDASRDWGFAGDYV 239 (340)
T ss_pred hHHHHHHHHHHHHHHHHHcCCeEEEeeeccccCCCCCcccchhHHHHHHHHHHcCCCCceEe--CCCcceecceeHHHHH
Confidence 9999999999999999999999999999999999755432 2344556667787665542 6789999999999999
Q ss_pred HHHHHHhccCCCCCCCCCceEEEeCCCCcccHHHHHHHHHHHhCCCc--cceeecC-CCCCCCCcccCChHHHHHhcCCC
Q 012176 347 KGCVGATGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKA--KKHVIRM-PRNGDVPYTHANVSLAYKDFGYK 423 (469)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~iyni~~~~~vt~~el~~~i~~~~g~~~--~~~~~~~-~~~~~~~~~~~d~~ka~~~LG~~ 423 (469)
++++.++++.. +++||+++++++|+.|+++.+.+.+|.+. .....+. .+.++......|++|++++|||+
T Consensus 240 ~a~~~~~~~~~-------~~~yni~~g~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lgw~ 312 (340)
T PLN02653 240 EAMWLMLQQEK-------PDDYVVATEESHTVEEFLEEAFGYVGLNWKDHVEIDPRYFRPAEVDNLKGDASKAREVLGWK 312 (340)
T ss_pred HHHHHHHhcCC-------CCcEEecCCCceeHHHHHHHHHHHcCCCCCcceeeCcccCCccccccccCCHHHHHHHhCCC
Confidence 99999997641 27899999999999999999999999642 2222221 24566677788999999999999
Q ss_pred ccCcHHHHHHHHHHHHHHHcC
Q 012176 424 PTTDLAAGLRKFVKWYVSYYG 444 (469)
Q Consensus 424 p~~~l~~~l~~~v~~~~~~~~ 444 (469)
|+++++|+|+++++||++...
T Consensus 313 p~~~l~~gi~~~~~~~~~~~~ 333 (340)
T PLN02653 313 PKVGFEQLVKMMVDEDLELAK 333 (340)
T ss_pred CCCCHHHHHHHHHHHHHHhcC
Confidence 999999999999999986554
|
|
| >TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-42 Score=348.42 Aligned_cols=321 Identities=21% Similarity=0.230 Sum_probs=256.4
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCccE
Q 012176 117 NGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTH 196 (469)
Q Consensus 117 ~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~d~ 196 (469)
++|+||||||+||||+++++.|+++|++|++++|......... ........+.++.+|++|.+.+.+++++.++|+
T Consensus 3 ~~k~ilItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~----~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~ 78 (349)
T TIGR02622 3 QGKKVLVTGHTGFKGSWLSLWLLELGAEVYGYSLDPPTSPNLF----ELLNLAKKIEDHFGDIRDAAKLRKAIAEFKPEI 78 (349)
T ss_pred CCCEEEEECCCChhHHHHHHHHHHCCCEEEEEeCCCccchhHH----HHHhhcCCceEEEccCCCHHHHHHHHhhcCCCE
Confidence 5689999999999999999999999999999998764321111 111112367789999999999999999888899
Q ss_pred EEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcCccccCCCC-CCCCCCCCCCCCCCChHHHHHH
Q 012176 197 VLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNT-QVPFSESHRTDQPASLYAATKK 275 (469)
Q Consensus 197 Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS~~vyg~~~-~~~~~E~~~~~~p~~~Y~~sK~ 275 (469)
|||+||.........++...+++|+.++.+++++|+..+..++||++||..+|+... ..+++|+++. .|.+.|+.+|.
T Consensus 79 vih~A~~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~iv~~SS~~vyg~~~~~~~~~e~~~~-~p~~~Y~~sK~ 157 (349)
T TIGR02622 79 VFHLAAQPLVRKSYADPLETFETNVMGTVNLLEAIRAIGSVKAVVNVTSDKCYRNDEWVWGYRETDPL-GGHDPYSSSKA 157 (349)
T ss_pred EEECCcccccccchhCHHHHHHHhHHHHHHHHHHHHhcCCCCEEEEEechhhhCCCCCCCCCccCCCC-CCCCcchhHHH
Confidence 999999755555566788899999999999999998876234999999999998643 2367777665 68899999999
Q ss_pred HHHHHHHHHHHHh-------CCcEEEEeecceecCCCC-CCChHHHHHHHHHcCCceEEEeeCCCCcceEecccHHHHHH
Q 012176 276 AGEEIAHTYNHIY-------GLALTGLRFFTVYGPWGR-PDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVK 347 (469)
Q Consensus 276 ~~E~~~~~~~~~~-------gi~~~ilRp~~v~Gp~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~ 347 (469)
++|.+++.+++.+ +++++++||++||||+.. ...+++.+++.+..|+++.+. ++++.++|+|++|+|+
T Consensus 158 ~~e~~~~~~~~~~~~~~~~~~i~~~~lR~~~vyGp~~~~~~~~~~~~~~~~~~g~~~~~~----~g~~~rd~i~v~D~a~ 233 (349)
T TIGR02622 158 CAELVIASYRSSFFGVANFHGIKIASARAGNVIGGGDWAEDRLIPDVIRAFSSNKIVIIR----NPDATRPWQHVLEPLS 233 (349)
T ss_pred HHHHHHHHHHHHhhcccccCCCcEEEEccCcccCCCcchhhhhhHHHHHHHhcCCCeEEC----CCCcccceeeHHHHHH
Confidence 9999999998765 899999999999999753 345678889999999887653 4789999999999999
Q ss_pred HHHHHhccCCCCCCCCCceEEEeCCC--CcccHHHHHHHHHHHhCC-CccceeecC-CCCCCCCcccCChHHHHHhcCCC
Q 012176 348 GCVGATGSGGKKRGPAQLRVYNLGNT--SPVPVGRLVSILENLLNT-KAKKHVIRM-PRNGDVPYTHANVSLAYKDFGYK 423 (469)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~iyni~~~--~~vt~~el~~~i~~~~g~-~~~~~~~~~-~~~~~~~~~~~d~~ka~~~LG~~ 423 (469)
+++.+++..... ....+++|||+++ ++++..|+++.+.+.++. +..+...+. .+..+.....+|++|++++|||+
T Consensus 234 a~~~~~~~~~~~-~~~~~~~yni~s~~~~~~s~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lgw~ 312 (349)
T TIGR02622 234 GYLLLAEKLFTG-QAEFAGAWNFGPRASDNARVVELVVDALEFWWGDDAEWEDDSDLNHPHEARLLKLDSSKARTLLGWH 312 (349)
T ss_pred HHHHHHHHHhhc-CccccceeeeCCCcccCcCHHHHHHHHHHHhcCCCCceeeccCCCCCcccceeecCHHHHHHHhCCC
Confidence 999887642100 0122489999974 689999999999987764 323222211 23445566788999999999999
Q ss_pred ccCcHHHHHHHHHHHHHHHcCCCC
Q 012176 424 PTTDLAAGLRKFVKWYVSYYGIQP 447 (469)
Q Consensus 424 p~~~l~~~l~~~v~~~~~~~~~~~ 447 (469)
|+++++++|+++++|+..+.+.+.
T Consensus 313 p~~~l~~gi~~~i~w~~~~~~~~~ 336 (349)
T TIGR02622 313 PRWGLEEAVSRTVDWYKAWLRGED 336 (349)
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999877654
|
Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose. |
| >PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-42 Score=374.74 Aligned_cols=313 Identities=20% Similarity=0.306 Sum_probs=254.5
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHC-CCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHH-HHHhhccCC
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKR-GDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPL-LTKLFDVVP 193 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~-l~~~~~~~~ 193 (469)
..+|+||||||+||||++|+++|+++ |++|++++|.... ........+++++.+|++|.+. ++++++++
T Consensus 313 ~~~~~VLVTGatGFIGs~Lv~~Ll~~~g~~V~~l~r~~~~--------~~~~~~~~~~~~~~gDl~d~~~~l~~~l~~~- 383 (660)
T PRK08125 313 KRRTRVLILGVNGFIGNHLTERLLRDDNYEVYGLDIGSDA--------ISRFLGHPRFHFVEGDISIHSEWIEYHIKKC- 383 (660)
T ss_pred hcCCEEEEECCCchHHHHHHHHHHhCCCcEEEEEeCCchh--------hhhhcCCCceEEEeccccCcHHHHHHHhcCC-
Confidence 45789999999999999999999986 7999999985421 1112223478999999998654 67788766
Q ss_pred ccEEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcCccccCCCCCCCCCCCCCC------CCCC
Q 012176 194 FTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRT------DQPA 267 (469)
Q Consensus 194 ~d~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~------~~p~ 267 (469)
|+|||+||...+.....++...+++|+.++.+++++|++.+ + +|||+||.++||.....+++|+++. ..|.
T Consensus 384 -D~ViHlAa~~~~~~~~~~~~~~~~~Nv~~t~~ll~a~~~~~-~-~~V~~SS~~vyg~~~~~~~~E~~~~~~~~p~~~p~ 460 (660)
T PRK08125 384 -DVVLPLVAIATPIEYTRNPLRVFELDFEENLKIIRYCVKYN-K-RIIFPSTSEVYGMCTDKYFDEDTSNLIVGPINKQR 460 (660)
T ss_pred -CEEEECccccCchhhccCHHHHHHhhHHHHHHHHHHHHhcC-C-eEEEEcchhhcCCCCCCCcCccccccccCCCCCCc
Confidence 99999999876655566788899999999999999999987 4 9999999999997655678887642 1355
Q ss_pred ChHHHHHHHHHHHHHHHHHHhCCcEEEEeecceecCCCCC--------CChHHHHHHHHHcCCceEEEeeCCCCcceEec
Q 012176 268 SLYAATKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRP--------DMAYFFFTKDILQGKTIDVYKTQDDREVARDF 339 (469)
Q Consensus 268 ~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~Gp~~~~--------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 339 (469)
+.|+.+|.++|.+++.+++.+|++++++||++||||+... ...+..++..+..++++.+. +++++.++|
T Consensus 461 s~Yg~sK~~~E~~~~~~~~~~g~~~~ilR~~~vyGp~~~~~~~~~~~~~~~i~~~i~~~~~~~~i~~~---g~g~~~rd~ 537 (660)
T PRK08125 461 WIYSVSKQLLDRVIWAYGEKEGLRFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLV---DGGKQKRCF 537 (660)
T ss_pred cchHHHHHHHHHHHHHHHHhcCCceEEEEEceeeCCCccccccccccccchHHHHHHHhcCCCCeEEe---CCCceeece
Confidence 6899999999999999998899999999999999997532 34577888888889998877 678999999
Q ss_pred ccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCC-cccHHHHHHHHHHHhCCCccceeecCC--------------CCC
Q 012176 340 TYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTS-PVPVGRLVSILENLLNTKAKKHVIRMP--------------RNG 404 (469)
Q Consensus 340 v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~-~vt~~el~~~i~~~~g~~~~~~~~~~~--------------~~~ 404 (469)
+|++|+|++++.+++++.. ...+++||+++++ .+|+.|+++.+.+.+|.+......+.. ...
T Consensus 538 i~v~Dva~a~~~~l~~~~~---~~~g~iyni~~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 614 (660)
T PRK08125 538 TDIRDGIEALFRIIENKDN---RCDGQIINIGNPDNEASIRELAEMLLASFEKHPLRDHFPPFAGFRVVESSSYYGKGYQ 614 (660)
T ss_pred eeHHHHHHHHHHHHhcccc---ccCCeEEEcCCCCCceeHHHHHHHHHHHhccCcccccCCccccccccccccccccccc
Confidence 9999999999999986421 1245899999985 799999999999999964322222211 012
Q ss_pred CCCcccCChHHHHHhcCCCccCcHHHHHHHHHHHHHHHcCCC
Q 012176 405 DVPYTHANVSLAYKDFGYKPTTDLAAGLRKFVKWYVSYYGIQ 446 (469)
Q Consensus 405 ~~~~~~~d~~ka~~~LG~~p~~~l~~~l~~~v~~~~~~~~~~ 446 (469)
+......|++|++++|||+|+++++++|+++++||++.++..
T Consensus 615 ~~~~~~~d~~ka~~~LGw~P~~~lee~l~~~i~~~~~~~~~~ 656 (660)
T PRK08125 615 DVEHRKPSIRNARRLLDWEPKIDMQETIDETLDFFLRTVDLT 656 (660)
T ss_pred cccccCCChHHHHHHhCCCCCCcHHHHHHHHHHHHHhccccc
Confidence 445567899999999999999999999999999999887753
|
|
| >KOG1429 consensus dTDP-glucose 4-6-dehydratase/UDP-glucuronic acid decarboxylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-43 Score=321.33 Aligned_cols=307 Identities=25% Similarity=0.419 Sum_probs=266.9
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCcc
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFT 195 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~d 195 (469)
..+++|+||||.||||+||++.|..+||+|+++|.... ..+.........+.++.+.-|+..+ ++.++ |
T Consensus 25 ~~~lrI~itGgaGFIgSHLvdkLm~egh~VIa~Dn~ft----g~k~n~~~~~~~~~fel~~hdv~~p-----l~~ev--D 93 (350)
T KOG1429|consen 25 SQNLRILITGGAGFIGSHLVDKLMTEGHEVIALDNYFT----GRKENLEHWIGHPNFELIRHDVVEP-----LLKEV--D 93 (350)
T ss_pred CCCcEEEEecCcchHHHHHHHHHHhcCCeEEEEecccc----cchhhcchhccCcceeEEEeechhH-----HHHHh--h
Confidence 45689999999999999999999999999999998654 2233333344566888888888665 77778 9
Q ss_pred EEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcCccccCCCCCCCCCCCCC----CCCCCChHH
Q 012176 196 HVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHR----TDQPASLYA 271 (469)
Q Consensus 196 ~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~----~~~p~~~Y~ 271 (469)
.|+|+|+..++.....+|.+.+..|+.++.+++-.|++.+. ||+++||+.|||.....|..|.-+ +..|.+.|.
T Consensus 94 ~IyhLAapasp~~y~~npvktIktN~igtln~lglakrv~a--R~l~aSTseVYgdp~~hpq~e~ywg~vnpigpr~cyd 171 (350)
T KOG1429|consen 94 QIYHLAAPASPPHYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RFLLASTSEVYGDPLVHPQVETYWGNVNPIGPRSCYD 171 (350)
T ss_pred hhhhhccCCCCcccccCccceeeecchhhHHHHHHHHHhCc--eEEEeecccccCCcccCCCccccccccCcCCchhhhh
Confidence 99999999888878889999999999999999999999994 899999999999877777766543 336788999
Q ss_pred HHHHHHHHHHHHHHHHhCCcEEEEeecceecCCCC--CCChHHHHHHHHHcCCceEEEeeCCCCcceEecccHHHHHHHH
Q 012176 272 ATKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGR--PDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGC 349 (469)
Q Consensus 272 ~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~Gp~~~--~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~~~ 349 (469)
..|+.+|.++..|.++.|+.+.|.|+++.|||... +...+..|..+++++.++.++ |+|.|.++|.||+|+++++
T Consensus 172 egKr~aE~L~~~y~k~~giE~rIaRifNtyGPrm~~~dgrvvsnf~~q~lr~epltv~---g~G~qtRSF~yvsD~Vegl 248 (350)
T KOG1429|consen 172 EGKRVAETLCYAYHKQEGIEVRIARIFNTYGPRMHMDDGRVVSNFIAQALRGEPLTVY---GDGKQTRSFQYVSDLVEGL 248 (350)
T ss_pred HHHHHHHHHHHHhhcccCcEEEEEeeecccCCccccCCChhhHHHHHHHhcCCCeEEE---cCCcceEEEEeHHHHHHHH
Confidence 99999999999999999999999999999999764 345778999999999999999 8899999999999999999
Q ss_pred HHHhccCCCCCCCCCceEEEeCCCCcccHHHHHHHHHHHhCCCccceeecCCCCCCCCcccCChHHHHHhcCCCccCcHH
Q 012176 350 VGATGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRNGDVPYTHANVSLAYKDFGYKPTTDLA 429 (469)
Q Consensus 350 ~~~~~~~~~~~~~~~~~iyni~~~~~vt~~el~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~~l~ 429 (469)
+.+++++.. +-|||++++.+|+.||++++.++.+....+..... ...|+.....|++++++.|||.|+++|+
T Consensus 249 l~Lm~s~~~-------~pvNiGnp~e~Tm~elAemv~~~~~~~s~i~~~~~-~~Ddp~kR~pDit~ake~LgW~Pkv~L~ 320 (350)
T KOG1429|consen 249 LRLMESDYR-------GPVNIGNPGEFTMLELAEMVKELIGPVSEIEFVEN-GPDDPRKRKPDITKAKEQLGWEPKVSLR 320 (350)
T ss_pred HHHhcCCCc-------CCcccCCccceeHHHHHHHHHHHcCCCcceeecCC-CCCCccccCccHHHHHHHhCCCCCCcHH
Confidence 999998753 55999999999999999999999987766665543 3567777889999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCC
Q 012176 430 AGLRKFVKWYVSYYGIQ 446 (469)
Q Consensus 430 ~~l~~~v~~~~~~~~~~ 446 (469)
|||..++.|+++.+...
T Consensus 321 egL~~t~~~fr~~i~~~ 337 (350)
T KOG1429|consen 321 EGLPLTVTYFRERIARE 337 (350)
T ss_pred HhhHHHHHHHHHHHHHH
Confidence 99999999999987754
|
|
| >TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-41 Score=337.23 Aligned_cols=312 Identities=26% Similarity=0.410 Sum_probs=254.9
Q ss_pred EEEEEcCCChhHHHHHHHHHHCC--CcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCccEE
Q 012176 120 TVLVTGAAGFVGSHCSLALKKRG--DGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTHV 197 (469)
Q Consensus 120 ~VlVtGatG~IG~~l~~~L~~~G--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~d~V 197 (469)
+|+||||+||||++++++|+++| ++|++++|....... . .........+++++.+|+.|++++.+++++.++|+|
T Consensus 1 ~ilItGatG~iG~~l~~~l~~~~~~~~v~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~v 77 (317)
T TIGR01181 1 RILVTGGAGFIGSNFVRYILNEHPDAEVIVLDKLTYAGNL--E-NLADLEDNPRYRFVKGDIGDRELVSRLFTEHQPDAV 77 (317)
T ss_pred CEEEEcCCchHHHHHHHHHHHhCCCCEEEEecCCCcchhh--h-hhhhhccCCCcEEEEcCCcCHHHHHHHHhhcCCCEE
Confidence 48999999999999999999987 789988874321111 0 111111234788999999999999999998667999
Q ss_pred EEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcCccccCCCCCC-CCCCCCCCCCCCChHHHHHHH
Q 012176 198 LHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQV-PFSESHRTDQPASLYAATKKA 276 (469)
Q Consensus 198 ih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS~~vyg~~~~~-~~~E~~~~~~p~~~Y~~sK~~ 276 (469)
||+|+........++++.++++|+.++.+++++|++.+.+.++|++||.++||..... +++|.++. .|.+.|+.+|..
T Consensus 78 i~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~i~~Ss~~v~g~~~~~~~~~e~~~~-~~~~~Y~~sK~~ 156 (317)
T TIGR01181 78 VHFAAESHVDRSISGPAAFIETNVVGTYTLLEAVRKYWHEFRFHHISTDEVYGDLEKGDAFTETTPL-APSSPYSASKAA 156 (317)
T ss_pred EEcccccCchhhhhCHHHHHHHHHHHHHHHHHHHHhcCCCceEEEeeccceeCCCCCCCCcCCCCCC-CCCCchHHHHHH
Confidence 9999986655556677889999999999999999987654589999999999865433 67777765 678899999999
Q ss_pred HHHHHHHHHHHhCCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceEecccHHHHHHHHHHHhccC
Q 012176 277 GEEIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGATGSG 356 (469)
Q Consensus 277 ~E~~~~~~~~~~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~~~~~~~~~~ 356 (469)
+|.+++.++.+++++++++||+.||||+..+..+++.++..+..+++++++ +++++.++|+|++|+++++..++++.
T Consensus 157 ~e~~~~~~~~~~~~~~~i~R~~~i~G~~~~~~~~~~~~~~~~~~~~~~~~~---~~g~~~~~~i~v~D~a~~~~~~~~~~ 233 (317)
T TIGR01181 157 SDHLVRAYHRTYGLPALITRCSNNYGPYQFPEKLIPLMITNALAGKPLPVY---GDGQQVRDWLYVEDHCRAIYLVLEKG 233 (317)
T ss_pred HHHHHHHHHHHhCCCeEEEEeccccCCCCCcccHHHHHHHHHhcCCCceEe---CCCceEEeeEEHHHHHHHHHHHHcCC
Confidence 999999999888999999999999999877666778888889999888887 67888999999999999999998754
Q ss_pred CCCCCCCCceEEEeCCCCcccHHHHHHHHHHHhCCCccceeecCCCCCCCCcccCChHHHHHhcCCCccCcHHHHHHHHH
Q 012176 357 GKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRNGDVPYTHANVSLAYKDFGYKPTTDLAAGLRKFV 436 (469)
Q Consensus 357 ~~~~~~~~~~iyni~~~~~vt~~el~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~~l~~~l~~~v 436 (469)
..+++||+++++++++.|+++.+.+.+|.+...........++...+..|++|++++|||+|++++++++++++
T Consensus 234 ------~~~~~~~~~~~~~~s~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~lG~~p~~~~~~~i~~~~ 307 (317)
T TIGR01181 234 ------RVGETYNIGGGNERTNLEVVETILELLGKDEDLITHVEDRPGHDRRYAIDASKIKRELGWAPKYTFEEGLRKTV 307 (317)
T ss_pred ------CCCceEEeCCCCceeHHHHHHHHHHHhCCCcccccccCCCccchhhhcCCHHHHHHHhCCCCCCcHHHHHHHHH
Confidence 23489999999999999999999999997543322222223334445689999999999999999999999999
Q ss_pred HHHHHHcC
Q 012176 437 KWYVSYYG 444 (469)
Q Consensus 437 ~~~~~~~~ 444 (469)
+||+++..
T Consensus 308 ~~~~~~~~ 315 (317)
T TIGR01181 308 QWYLDNEW 315 (317)
T ss_pred HHHHhccC
Confidence 99966543
|
This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor. |
| >PRK10084 dTDP-glucose 4,6 dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-41 Score=342.31 Aligned_cols=311 Identities=25% Similarity=0.418 Sum_probs=247.4
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCCc-EEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCccEE
Q 012176 119 MTVLVTGAAGFVGSHCSLALKKRGDG-VLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTHV 197 (469)
Q Consensus 119 ~~VlVtGatG~IG~~l~~~L~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~d~V 197 (469)
|+||||||+||||++|+++|+++|++ |+++++...... ..... ......+++++.+|++|.+++.++++..++|+|
T Consensus 1 mkilITGgtG~iG~~l~~~L~~~g~~~v~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~v 77 (352)
T PRK10084 1 MKILVTGGAGFIGSAVVRHIINNTQDSVVNVDKLTYAGN--LESLA-DVSDSERYVFEHADICDRAELDRIFAQHQPDAV 77 (352)
T ss_pred CeEEEECCCcHHhHHHHHHHHHhCCCeEEEecCCCccch--HHHHH-hcccCCceEEEEecCCCHHHHHHHHHhcCCCEE
Confidence 58999999999999999999999976 555655321111 11111 111123678899999999999999987778999
Q ss_pred EEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhc---------CCCCeEEEEcCccccCCCC----------CCCCC
Q 012176 198 LHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSV---------NPQPSIVWASSSSVYGLNT----------QVPFS 258 (469)
Q Consensus 198 ih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~---------~~~~~~V~~SS~~vyg~~~----------~~~~~ 258 (469)
||+||.........+++.++++|+.|+.+++++|++. +.. +||++||.++||... ..+++
T Consensus 78 ih~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~~~~~~~~~~~~~-~~i~~SS~~vyg~~~~~~~~~~~~~~~~~~ 156 (352)
T PRK10084 78 MHLAAESHVDRSITGPAAFIETNIVGTYVLLEAARNYWSALDEDKKNAF-RFHHISTDEVYGDLPHPDEVENSEELPLFT 156 (352)
T ss_pred EECCcccCCcchhcCchhhhhhhhHHHHHHHHHHHHhccccccccccce-eEEEecchhhcCCCCccccccccccCCCcc
Confidence 9999975544344567889999999999999999874 233 899999999998531 12467
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHHHhCCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceEe
Q 012176 259 ESHRTDQPASLYAATKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARD 338 (469)
Q Consensus 259 E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 338 (469)
|+++. .|.+.|+.+|.++|.+++.+++.+|++++++|++.||||+......+..++..+..+.++.++ +++++.++
T Consensus 157 E~~~~-~p~~~Y~~sK~~~E~~~~~~~~~~g~~~vilr~~~v~Gp~~~~~~~~~~~~~~~~~~~~~~~~---~~g~~~~~ 232 (352)
T PRK10084 157 ETTAY-APSSPYSASKASSDHLVRAWLRTYGLPTIVTNCSNNYGPYHFPEKLIPLVILNALEGKPLPIY---GKGDQIRD 232 (352)
T ss_pred ccCCC-CCCChhHHHHHHHHHHHHHHHHHhCCCEEEEeccceeCCCcCccchHHHHHHHHhcCCCeEEe---CCCCeEEe
Confidence 77665 788999999999999999999889999999999999999875555677778888888888887 67889999
Q ss_pred cccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCCcccHHHHHHHHHHHhCCCccce-------eecCCCCCCCCcccC
Q 012176 339 FTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKH-------VIRMPRNGDVPYTHA 411 (469)
Q Consensus 339 ~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~~vt~~el~~~i~~~~g~~~~~~-------~~~~~~~~~~~~~~~ 411 (469)
|+|++|+|++++.++++. ..+++||+++++++++.|+++.+.+.+|...... .....+.++...+.+
T Consensus 233 ~v~v~D~a~a~~~~l~~~------~~~~~yni~~~~~~s~~~~~~~i~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 306 (352)
T PRK10084 233 WLYVEDHARALYKVVTEG------KAGETYNIGGHNEKKNLDVVLTICDLLDEIVPKATSYREQITYVADRPGHDRRYAI 306 (352)
T ss_pred eEEHHHHHHHHHHHHhcC------CCCceEEeCCCCcCcHHHHHHHHHHHhccccccccchhhhccccccCCCCCceeee
Confidence 999999999999998753 2348999999999999999999999998632111 001112334455678
Q ss_pred ChHHHHHhcCCCccCcHHHHHHHHHHHHHHHc
Q 012176 412 NVSLAYKDFGYKPTTDLAAGLRKFVKWYVSYY 443 (469)
Q Consensus 412 d~~ka~~~LG~~p~~~l~~~l~~~v~~~~~~~ 443 (469)
|++|++++|||+|+++++++|+++++||.++.
T Consensus 307 d~~k~~~~lg~~p~~~l~~~l~~~~~~~~~~~ 338 (352)
T PRK10084 307 DASKISRELGWKPQETFESGIRKTVEWYLANT 338 (352)
T ss_pred CHHHHHHHcCCCCcCCHHHHHHHHHHHHHhCH
Confidence 99999999999999999999999999998853
|
|
| >PLN02695 GDP-D-mannose-3',5'-epimerase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-41 Score=344.57 Aligned_cols=307 Identities=26% Similarity=0.346 Sum_probs=248.2
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCcc
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFT 195 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~d 195 (469)
..+|+||||||+||||++|++.|+++||+|++++|...... . . ....++++.+|++|.+.+.++++++ |
T Consensus 19 ~~~~~IlVtGgtGfIG~~l~~~L~~~G~~V~~v~r~~~~~~---~----~--~~~~~~~~~~Dl~d~~~~~~~~~~~--D 87 (370)
T PLN02695 19 SEKLRICITGAGGFIASHIARRLKAEGHYIIASDWKKNEHM---S----E--DMFCHEFHLVDLRVMENCLKVTKGV--D 87 (370)
T ss_pred CCCCEEEEECCccHHHHHHHHHHHhCCCEEEEEEecccccc---c----c--ccccceEEECCCCCHHHHHHHHhCC--C
Confidence 46789999999999999999999999999999998532100 0 0 0113578899999999999888866 9
Q ss_pred EEEEcccccCh-hhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcCccccCCCCC----CCCCCCCC-CCCCCCh
Q 012176 196 HVLHLAAQAGV-RYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQ----VPFSESHR-TDQPASL 269 (469)
Q Consensus 196 ~Vih~Aa~~~~-~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS~~vyg~~~~----~~~~E~~~-~~~p~~~ 269 (469)
+|||+|+.... .....++...+..|+.++.+|+++|++.+++ +|||+||.++||.... .++.|++. +..|.+.
T Consensus 88 ~Vih~Aa~~~~~~~~~~~~~~~~~~N~~~t~nll~aa~~~~vk-~~V~~SS~~vYg~~~~~~~~~~~~E~~~~p~~p~s~ 166 (370)
T PLN02695 88 HVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEAARINGVK-RFFYASSACIYPEFKQLETNVSLKESDAWPAEPQDA 166 (370)
T ss_pred EEEEcccccCCccccccCchhhHHHHHHHHHHHHHHHHHhCCC-EEEEeCchhhcCCccccCcCCCcCcccCCCCCCCCH
Confidence 99999987532 1223355567788999999999999999987 9999999999986532 24666552 3478899
Q ss_pred HHHHHHHHHHHHHHHHHHhCCcEEEEeecceecCCCCC----CChHHHHHHHHHc-CCceEEEeeCCCCcceEecccHHH
Q 012176 270 YAATKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRP----DMAYFFFTKDILQ-GKTIDVYKTQDDREVARDFTYIDD 344 (469)
Q Consensus 270 Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~Gp~~~~----~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~v~v~D 344 (469)
|+.+|.++|++++.+++.+|++++++||++||||+... ......|+..+.. +.++.++ +++++.++|+|++|
T Consensus 167 Yg~sK~~~E~~~~~~~~~~g~~~~ilR~~~vyGp~~~~~~~~~~~~~~~~~~~~~~~~~i~~~---g~g~~~r~~i~v~D 243 (370)
T PLN02695 167 YGLEKLATEELCKHYTKDFGIECRIGRFHNIYGPFGTWKGGREKAPAAFCRKALTSTDEFEMW---GDGKQTRSFTFIDE 243 (370)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCEEEEEECCccCCCCCccccccccHHHHHHHHHcCCCCeEEe---CCCCeEEeEEeHHH
Confidence 99999999999999998889999999999999997642 2345567777665 4677777 67899999999999
Q ss_pred HHHHHHHHhccCCCCCCCCCceEEEeCCCCcccHHHHHHHHHHHhCCCccceeecCCCCCCCCcccCChHHHHHhcCCCc
Q 012176 345 VVKGCVGATGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRNGDVPYTHANVSLAYKDFGYKP 424 (469)
Q Consensus 345 va~~~~~~~~~~~~~~~~~~~~iyni~~~~~vt~~el~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~d~~ka~~~LG~~p 424 (469)
++++++.++++.. +++||+++++++|+.|+++.+.+.+|.+.++...+.+. ......+|++|++++|||+|
T Consensus 244 ~a~ai~~~~~~~~-------~~~~nv~~~~~~s~~el~~~i~~~~g~~~~i~~~~~~~--~~~~~~~d~sk~~~~lgw~p 314 (370)
T PLN02695 244 CVEGVLRLTKSDF-------REPVNIGSDEMVSMNEMAEIALSFENKKLPIKHIPGPE--GVRGRNSDNTLIKEKLGWAP 314 (370)
T ss_pred HHHHHHHHHhccC-------CCceEecCCCceeHHHHHHHHHHHhCCCCCceecCCCC--CccccccCHHHHHHhcCCCC
Confidence 9999999876531 37999999999999999999999999876655554332 22345689999999999999
Q ss_pred cCcHHHHHHHHHHHHHHHcCCC
Q 012176 425 TTDLAAGLRKFVKWYVSYYGIQ 446 (469)
Q Consensus 425 ~~~l~~~l~~~v~~~~~~~~~~ 446 (469)
+++++++|+++++|+.+.....
T Consensus 315 ~~~l~e~i~~~~~~~~~~~~~~ 336 (370)
T PLN02695 315 TMRLKDGLRITYFWIKEQIEKE 336 (370)
T ss_pred CCCHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999987643
|
|
| >KOG0747 consensus Putative NAD+-dependent epimerases [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-42 Score=318.98 Aligned_cols=311 Identities=27% Similarity=0.406 Sum_probs=265.3
Q ss_pred CEEEEEcCCChhHHHHHHHHHHC--CCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCccE
Q 012176 119 MTVLVTGAAGFVGSHCSLALKKR--GDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTH 196 (469)
Q Consensus 119 ~~VlVtGatG~IG~~l~~~L~~~--G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~d~ 196 (469)
++|+||||.||||++.+..+... .++.+.++--. +... ..........++..++++|+.|...+..++...++|.
T Consensus 7 ~~vlItgg~gfi~Sn~~~~~~~~~p~~~~v~idkL~--~~s~-~~~l~~~~n~p~ykfv~~di~~~~~~~~~~~~~~id~ 83 (331)
T KOG0747|consen 7 KNVLITGGAGFIGSNFINYLVDKYPDYKFVNLDKLD--YCSN-LKNLEPVRNSPNYKFVEGDIADADLVLYLFETEEIDT 83 (331)
T ss_pred ceEEEecCcCcchhhhhhhcccCCCCCcEEEEeecc--cccc-cchhhhhccCCCceEeeccccchHHHHhhhccCchhh
Confidence 78999999999999999999987 44555554311 1111 2223334456799999999999999999999889999
Q ss_pred EEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcCccccCCCCCCCCC-CCCCCCCCCChHHHHHH
Q 012176 197 VLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFS-ESHRTDQPASLYAATKK 275 (469)
Q Consensus 197 Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS~~vyg~~~~~~~~-E~~~~~~p~~~Y~~sK~ 275 (469)
|||.|+....+.+..++-.....|+.++..|+++++..|...+|||+||..|||.+.+.... |.+.+ +|.++|+++|+
T Consensus 84 vihfaa~t~vd~s~~~~~~~~~nnil~t~~Lle~~~~sg~i~~fvhvSTdeVYGds~~~~~~~E~s~~-nPtnpyAasKa 162 (331)
T KOG0747|consen 84 VIHFAAQTHVDRSFGDSFEFTKNNILSTHVLLEAVRVSGNIRRFVHVSTDEVYGDSDEDAVVGEASLL-NPTNPYAASKA 162 (331)
T ss_pred hhhhHhhhhhhhhcCchHHHhcCCchhhhhHHHHHHhccCeeEEEEecccceecCccccccccccccC-CCCCchHHHHH
Confidence 99999998888888888899999999999999999999665699999999999999887777 77776 89999999999
Q ss_pred HHHHHHHHHHHHhCCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceEecccHHHHHHHHHHHhcc
Q 012176 276 AGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGATGS 355 (469)
Q Consensus 276 ~~E~~~~~~~~~~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~~~~~~~~~ 355 (469)
++|+.+++|.+.|+++++++|.++||||+.-+...++.|+.....+++.++. |+|.+.++|+||+|+++++..+++.
T Consensus 163 AaE~~v~Sy~~sy~lpvv~~R~nnVYGP~q~~~klipkFi~l~~~~~~~~i~---g~g~~~rs~l~veD~~ea~~~v~~K 239 (331)
T KOG0747|consen 163 AAEMLVRSYGRSYGLPVVTTRMNNVYGPNQYPEKLIPKFIKLAMRGKEYPIH---GDGLQTRSYLYVEDVSEAFKAVLEK 239 (331)
T ss_pred HHHHHHHHHhhccCCcEEEEeccCccCCCcChHHHhHHHHHHHHhCCCccee---cCcccceeeEeHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999999999 8899999999999999999999987
Q ss_pred CCCCCCCCCceEEEeCCCCcccHHHHHHHHHHHhCCCccc------eeecCCCCCCCCcccCChHHHHHhcCCCccCcHH
Q 012176 356 GGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKK------HVIRMPRNGDVPYTHANVSLAYKDFGYKPTTDLA 429 (469)
Q Consensus 356 ~~~~~~~~~~~iyni~~~~~vt~~el~~~i~~~~g~~~~~------~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~~l~ 429 (469)
.. .|+||||+++.+.+..|+++.+.+.+++...- ...-..++.....+.++.+|++ .|||+|+++|+
T Consensus 240 g~------~geIYNIgtd~e~~~~~l~k~i~eli~~~~~~~~~~p~~~~v~dRp~nd~Ry~~~~eKik-~LGw~~~~p~~ 312 (331)
T KOG0747|consen 240 GE------LGEIYNIGTDDEMRVIDLAKDICELFEKRLPNIDTEPFIFFVEDRPYNDLRYFLDDEKIK-KLGWRPTTPWE 312 (331)
T ss_pred CC------ccceeeccCcchhhHHHHHHHHHHHHHHhccCCCCCCcceecCCCCcccccccccHHHHH-hcCCcccCcHH
Confidence 42 45999999999999999999999998764321 1111123333344778999998 89999999999
Q ss_pred HHHHHHHHHHHHHc
Q 012176 430 AGLRKFVKWYVSYY 443 (469)
Q Consensus 430 ~~l~~~v~~~~~~~ 443 (469)
+||+++++||.+..
T Consensus 313 eGLrktie~y~~~~ 326 (331)
T KOG0747|consen 313 EGLRKTIEWYTKNF 326 (331)
T ss_pred HHHHHHHHHHHhhh
Confidence 99999999998876
|
|
| >PLN02240 UDP-glucose 4-epimerase | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-41 Score=336.98 Aligned_cols=326 Identities=26% Similarity=0.360 Sum_probs=253.9
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHh-hccCCeEEEEecCCCHHHHHHhhccCCc
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKL-LQKHQVFIVEGDLNDAPLLTKLFDVVPF 194 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~v~~v~~Dl~d~~~l~~~~~~~~~ 194 (469)
+.+|+|+||||+||||++|+++|+++|++|++++|..........+..... ....++.++.+|++|++.+.++++..++
T Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~~~ 82 (352)
T PLN02240 3 LMGRTILVTGGAGYIGSHTVLQLLLAGYKVVVIDNLDNSSEEALRRVKELAGDLGDNLVFHKVDLRDKEALEKVFASTRF 82 (352)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCcchHHHHHHHHHhhcccCccceEEecCcCCHHHHHHHHHhCCC
Confidence 567899999999999999999999999999999875432211111111111 0123688999999999999999987678
Q ss_pred cEEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcCccccCCCCCCCCCCCCCCCCCCChHHHHH
Q 012176 195 THVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATK 274 (469)
Q Consensus 195 d~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y~~sK 274 (469)
|+|||+||.........++...++.|+.++.+++++|++.+++ +||++||.++||.....+++|+++. .|.+.|+.+|
T Consensus 83 d~vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~v~~Ss~~vyg~~~~~~~~E~~~~-~~~~~Y~~sK 160 (352)
T PLN02240 83 DAVIHFAGLKAVGESVAKPLLYYDNNLVGTINLLEVMAKHGCK-KLVFSSSATVYGQPEEVPCTEEFPL-SATNPYGRTK 160 (352)
T ss_pred CEEEEccccCCccccccCHHHHHHHHHHHHHHHHHHHHHcCCC-EEEEEccHHHhCCCCCCCCCCCCCC-CCCCHHHHHH
Confidence 9999999975444444677889999999999999999998876 9999999999987666788888876 6788999999
Q ss_pred HHHHHHHHHHHHH-hCCcEEEEeecceecCCCC------CCC---hHHHHHHHHHcCC--ceEEEee---CCCCcceEec
Q 012176 275 KAGEEIAHTYNHI-YGLALTGLRFFTVYGPWGR------PDM---AYFFFTKDILQGK--TIDVYKT---QDDREVARDF 339 (469)
Q Consensus 275 ~~~E~~~~~~~~~-~gi~~~ilRp~~v~Gp~~~------~~~---~~~~~~~~~~~g~--~~~~~~~---~~~~~~~~~~ 339 (469)
.++|.+++.++.. .+++++++|++++||++.. +.. .+..++..+..++ .+.+.+. .+++.+.++|
T Consensus 161 ~~~e~~~~~~~~~~~~~~~~~~R~~~v~G~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~ 240 (352)
T PLN02240 161 LFIEEICRDIHASDPEWKIILLRYFNPVGAHPSGRIGEDPKGIPNNLMPYVQQVAVGRRPELTVFGNDYPTKDGTGVRDY 240 (352)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEeecCcCCCCccccccCCCCCCcchHHHHHHHHHhCCCCceEEeCCCCCCCCCCEEEee
Confidence 9999999998754 5799999999999997421 111 1223455555554 3444420 1267899999
Q ss_pred ccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCCcccHHHHHHHHHHHhCCCccceeecCCCCCCCCcccCChHHHHHh
Q 012176 340 TYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRNGDVPYTHANVSLAYKD 419 (469)
Q Consensus 340 v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~~vt~~el~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~d~~ka~~~ 419 (469)
+|++|+|++++.++++... .+...+++||+++++++|+.|+++.+.+.+|.+..+...+. +..+......|++|++++
T Consensus 241 i~v~D~a~a~~~a~~~~~~-~~~~~~~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~~~~-~~~~~~~~~~d~~k~~~~ 318 (352)
T PLN02240 241 IHVMDLADGHIAALRKLFT-DPDIGCEAYNLGTGKGTSVLEMVAAFEKASGKKIPLKLAPR-RPGDAEEVYASTEKAEKE 318 (352)
T ss_pred EEHHHHHHHHHHHHhhhhh-ccCCCCceEEccCCCcEeHHHHHHHHHHHhCCCCCceeCCC-CCCChhhhhcCHHHHHHH
Confidence 9999999999998865310 01233589999999999999999999999998766554443 344555566899999999
Q ss_pred cCCCccCcHHHHHHHHHHHHHHHcCC
Q 012176 420 FGYKPTTDLAAGLRKFVKWYVSYYGI 445 (469)
Q Consensus 420 LG~~p~~~l~~~l~~~v~~~~~~~~~ 445 (469)
|||+|+++++++|+++++|++++...
T Consensus 319 lg~~p~~~l~~~l~~~~~~~~~~~~~ 344 (352)
T PLN02240 319 LGWKAKYGIDEMCRDQWNWASKNPYG 344 (352)
T ss_pred hCCCCCCCHHHHHHHHHHHHHhCccc
Confidence 99999999999999999999887543
|
|
| >PLN02260 probable rhamnose biosynthetic enzyme | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-41 Score=364.74 Aligned_cols=315 Identities=26% Similarity=0.353 Sum_probs=254.8
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHC--CCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCC
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKR--GDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVP 193 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~--G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~ 193 (469)
.+.|+||||||+||||++|+++|+++ |++|++++|... ........ ......+++++.+|++|.+.+.+++...+
T Consensus 4 ~~~~~VLVTGatGfIG~~lv~~Ll~~g~~~~V~~~d~~~~--~~~~~~l~-~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~ 80 (668)
T PLN02260 4 YEPKNILITGAAGFIASHVANRLIRNYPDYKIVVLDKLDY--CSNLKNLN-PSKSSPNFKFVKGDIASADLVNYLLITEG 80 (668)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHhCCCCEEEEEeCCCc--cchhhhhh-hcccCCCeEEEECCCCChHHHHHHHhhcC
Confidence 46789999999999999999999998 688999987421 01111111 11123479999999999999988876556
Q ss_pred ccEEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcCccccCCCCCCC---CCCCCCCCCCCChH
Q 012176 194 FTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVP---FSESHRTDQPASLY 270 (469)
Q Consensus 194 ~d~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS~~vyg~~~~~~---~~E~~~~~~p~~~Y 270 (469)
+|+|||+|+.........++..++++|+.++.+++++|++.+..++|||+||..+||.....+ ..|+++. .|.+.|
T Consensus 81 ~D~ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~~~vkr~I~~SS~~vyg~~~~~~~~~~~E~~~~-~p~~~Y 159 (668)
T PLN02260 81 IDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVSTDEVYGETDEDADVGNHEASQL-LPTNPY 159 (668)
T ss_pred CCEEEECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEcchHHhCCCccccccCccccCCC-CCCCCc
Confidence 799999999876655556677889999999999999999987334999999999999765432 2455554 678899
Q ss_pred HHHHHHHHHHHHHHHHHhCCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceEecccHHHHHHHHH
Q 012176 271 AATKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCV 350 (469)
Q Consensus 271 ~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~~~~ 350 (469)
+.+|.++|.+++.+.+.++++++++||++||||+..+..+++.++..+..++++.++ +++++.++|+||+|+|++++
T Consensus 160 ~~sK~~aE~~v~~~~~~~~l~~vilR~~~VyGp~~~~~~~i~~~~~~a~~g~~i~i~---g~g~~~r~~ihV~Dva~a~~ 236 (668)
T PLN02260 160 SATKAGAEMLVMAYGRSYGLPVITTRGNNVYGPNQFPEKLIPKFILLAMQGKPLPIH---GDGSNVRSYLYCEDVAEAFE 236 (668)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEECcccccCcCCCcccHHHHHHHHHhCCCCeEEe---cCCCceEeeEEHHHHHHHHH
Confidence 999999999999999888999999999999999887666778888888899998888 77889999999999999999
Q ss_pred HHhccCCCCCCCCCceEEEeCCCCcccHHHHHHHHHHHhCCCccceeec-CCCCCCCCcccCChHHHHHhcCCCccCcHH
Q 012176 351 GATGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIR-MPRNGDVPYTHANVSLAYKDFGYKPTTDLA 429 (469)
Q Consensus 351 ~~~~~~~~~~~~~~~~iyni~~~~~vt~~el~~~i~~~~g~~~~~~~~~-~~~~~~~~~~~~d~~ka~~~LG~~p~~~l~ 429 (469)
.++++. ..+++||+++++.+++.|+++.+.+.+|.+....... ..++.+...+.+|++|++ +|||+|+++++
T Consensus 237 ~~l~~~------~~~~vyni~~~~~~s~~el~~~i~~~~g~~~~~~i~~~~~~p~~~~~~~~d~~k~~-~lGw~p~~~~~ 309 (668)
T PLN02260 237 VVLHKG------EVGHVYNIGTKKERRVIDVAKDICKLFGLDPEKSIKFVENRPFNDQRYFLDDQKLK-KLGWQERTSWE 309 (668)
T ss_pred HHHhcC------CCCCEEEECCCCeeEHHHHHHHHHHHhCCCCcceeeecCCCCCCcceeecCHHHHH-HcCCCCCCCHH
Confidence 998654 2348999999999999999999999999765432211 122333445668999996 69999999999
Q ss_pred HHHHHHHHHHHHHcC
Q 012176 430 AGLRKFVKWYVSYYG 444 (469)
Q Consensus 430 ~~l~~~v~~~~~~~~ 444 (469)
|+|+++++||+++..
T Consensus 310 egl~~~i~w~~~~~~ 324 (668)
T PLN02260 310 EGLKKTMEWYTSNPD 324 (668)
T ss_pred HHHHHHHHHHHhChh
Confidence 999999999987543
|
|
| >PRK10675 UDP-galactose-4-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-40 Score=332.76 Aligned_cols=318 Identities=25% Similarity=0.423 Sum_probs=248.0
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCccEEE
Q 012176 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTHVL 198 (469)
Q Consensus 119 ~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~d~Vi 198 (469)
|+||||||+||||++|+++|+++|++|++++|........... .......++.++.+|++|.+.+.++++..++|+||
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~g~~V~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vv 78 (338)
T PRK10675 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVVILDNLCNSKRSVLPV--IERLGGKHPTFVEGDIRNEALLTEILHDHAIDTVI 78 (338)
T ss_pred CeEEEECCCChHHHHHHHHHHHCCCeEEEEecCCCchHhHHHH--HHHhcCCCceEEEccCCCHHHHHHHHhcCCCCEEE
Confidence 6899999999999999999999999999998754322111111 11112335788999999999999999876779999
Q ss_pred EcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcCccccCCCCCCCCCCCCCCCCCCChHHHHHHHHH
Q 012176 199 HLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGE 278 (469)
Q Consensus 199 h~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y~~sK~~~E 278 (469)
|+|+.........++...++.|+.++.+++++|++.+++ +||++||.++||.....+++|+++...|.+.|+.+|.++|
T Consensus 79 h~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~v~~Ss~~~yg~~~~~~~~E~~~~~~p~~~Y~~sK~~~E 157 (338)
T PRK10675 79 HFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVK-NLIFSSSATVYGDQPKIPYVESFPTGTPQSPYGKSKLMVE 157 (338)
T ss_pred ECCccccccchhhCHHHHHHHHHHHHHHHHHHHHHcCCC-EEEEeccHHhhCCCCCCccccccCCCCCCChhHHHHHHHH
Confidence 999875443344566788999999999999999999886 9999999999997766788888876467899999999999
Q ss_pred HHHHHHHHHh-CCcEEEEeecceecCCC------CC----CChHHHHHHHHHcCC--ceEEEee---CCCCcceEecccH
Q 012176 279 EIAHTYNHIY-GLALTGLRFFTVYGPWG------RP----DMAYFFFTKDILQGK--TIDVYKT---QDDREVARDFTYI 342 (469)
Q Consensus 279 ~~~~~~~~~~-gi~~~ilRp~~v~Gp~~------~~----~~~~~~~~~~~~~g~--~~~~~~~---~~~~~~~~~~v~v 342 (469)
++++++++.+ +++++++|++++|||.. +. ..+. .++..+..++ .+.+++. ..++.+.++|+|+
T Consensus 158 ~~~~~~~~~~~~~~~~ilR~~~v~g~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~v~v 236 (338)
T PRK10675 158 QILTDLQKAQPDWSIALLRYFNPVGAHPSGDMGEDPQGIPNNLM-PYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIHV 236 (338)
T ss_pred HHHHHHHHhcCCCcEEEEEeeeecCCCcccccccCCCCChhHHH-HHHHHHHhcCCCceEEeCCcCCCCCCcEEEeeEEH
Confidence 9999998764 89999999999999741 11 1122 3344444443 3444420 0256889999999
Q ss_pred HHHHHHHHHHhccCCCCCCCCCceEEEeCCCCcccHHHHHHHHHHHhCCCccceeecCCCCCCCCcccCChHHHHHhcCC
Q 012176 343 DDVVKGCVGATGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRNGDVPYTHANVSLAYKDFGY 422 (469)
Q Consensus 343 ~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~~vt~~el~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~d~~ka~~~LG~ 422 (469)
+|+|++++.+++.... ...+++||+++++++|+.|+++.+.+.+|++..+...+ ....+......|++|++++|||
T Consensus 237 ~D~a~~~~~~~~~~~~---~~~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~-~~~~~~~~~~~~~~k~~~~lg~ 312 (338)
T PRK10675 237 MDLADGHVAAMEKLAN---KPGVHIYNLGAGVGSSVLDVVNAFSKACGKPVNYHFAP-RREGDLPAYWADASKADRELNW 312 (338)
T ss_pred HHHHHHHHHHHHhhhc---cCCCceEEecCCCceeHHHHHHHHHHHhCCCCCeeeCC-CCCCchhhhhcCHHHHHHHhCC
Confidence 9999999999875211 12248999999999999999999999999876555433 2344555667899999999999
Q ss_pred CccCcHHHHHHHHHHHHHHHcC
Q 012176 423 KPTTDLAAGLRKFVKWYVSYYG 444 (469)
Q Consensus 423 ~p~~~l~~~l~~~v~~~~~~~~ 444 (469)
+|+++++++|+++++|+.++..
T Consensus 313 ~p~~~~~~~~~~~~~~~~~~~~ 334 (338)
T PRK10675 313 RVTRTLDEMAQDTWHWQSRHPQ 334 (338)
T ss_pred CCcCcHHHHHHHHHHHHHhhhh
Confidence 9999999999999999988643
|
|
| >PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-40 Score=328.75 Aligned_cols=281 Identities=17% Similarity=0.162 Sum_probs=232.7
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCccEEE
Q 012176 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTHVL 198 (469)
Q Consensus 119 ~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~d~Vi 198 (469)
|+||||||+||||++|+++|+++| +|++++|.. ..+.+|++|.+.+++++++.++|+||
T Consensus 1 m~iLVtG~~GfiGs~l~~~L~~~g-~V~~~~~~~--------------------~~~~~Dl~d~~~~~~~~~~~~~D~Vi 59 (299)
T PRK09987 1 MNILLFGKTGQVGWELQRALAPLG-NLIALDVHS--------------------TDYCGDFSNPEGVAETVRKIRPDVIV 59 (299)
T ss_pred CeEEEECCCCHHHHHHHHHhhccC-CEEEecccc--------------------ccccCCCCCHHHHHHHHHhcCCCEEE
Confidence 689999999999999999999999 799998732 13468999999999999987789999
Q ss_pred EcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcCccccCCCCCCCCCCCCCCCCCCChHHHHHHHHH
Q 012176 199 HLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGE 278 (469)
Q Consensus 199 h~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y~~sK~~~E 278 (469)
|+|+...+..++.+++..+++|+.++.+|+++|++.|. +|||+||..|||.....|++|+++. .|.+.|+.+|.++|
T Consensus 60 h~Aa~~~~~~~~~~~~~~~~~N~~~~~~l~~aa~~~g~--~~v~~Ss~~Vy~~~~~~p~~E~~~~-~P~~~Yg~sK~~~E 136 (299)
T PRK09987 60 NAAAHTAVDKAESEPEFAQLLNATSVEAIAKAANEVGA--WVVHYSTDYVFPGTGDIPWQETDAT-APLNVYGETKLAGE 136 (299)
T ss_pred ECCccCCcchhhcCHHHHHHHHHHHHHHHHHHHHHcCC--eEEEEccceEECCCCCCCcCCCCCC-CCCCHHHHHHHHHH
Confidence 99999877777788888999999999999999999985 7999999999988777789999887 78899999999999
Q ss_pred HHHHHHHHHhCCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCC--CcceEecccHHHHHHHHHHHhccC
Q 012176 279 EIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDD--REVARDFTYIDDVVKGCVGATGSG 356 (469)
Q Consensus 279 ~~~~~~~~~~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~~~~v~v~Dva~~~~~~~~~~ 356 (469)
++++.++ .+.+++|+++||||+.. .++..+++.+.+++++.++ ++ +.+.+.+.+++|++.++..++...
T Consensus 137 ~~~~~~~----~~~~ilR~~~vyGp~~~--~~~~~~~~~~~~~~~~~v~---~d~~g~~~~~~~~~d~~~~~~~~~~~~~ 207 (299)
T PRK09987 137 KALQEHC----AKHLIFRTSWVYAGKGN--NFAKTMLRLAKEREELSVI---NDQFGAPTGAELLADCTAHAIRVALNKP 207 (299)
T ss_pred HHHHHhC----CCEEEEecceecCCCCC--CHHHHHHHHHhcCCCeEEe---CCCcCCCCCHHHHHHHHHHHHHHhhccC
Confidence 9998764 35799999999999753 3567788888888899888 44 455556677888888888877543
Q ss_pred CCCCCCCCceEEEeCCCCcccHHHHHHHHHHHhC---CCcc---ceeecC----CCCCCCCcccCChHHHHHhcCCCccC
Q 012176 357 GKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLN---TKAK---KHVIRM----PRNGDVPYTHANVSLAYKDFGYKPTT 426 (469)
Q Consensus 357 ~~~~~~~~~~iyni~~~~~vt~~el~~~i~~~~g---~~~~---~~~~~~----~~~~~~~~~~~d~~ka~~~LG~~p~~ 426 (469)
. .+++||+++++.+|+.|+++.+.+.++ .+.. +...+. ....++.+..+|++|+++.|||+|.
T Consensus 208 ~------~~giyni~~~~~~s~~e~~~~i~~~~~~~g~~~~~~~i~~~~~~~~~~~~~rp~~~~ld~~k~~~~lg~~~~- 280 (299)
T PRK09987 208 E------VAGLYHLVASGTTTWHDYAALVFEEARKAGITLALNKLNAVPTSAYPTPARRPHNSRLNTEKFQQNFALVLP- 280 (299)
T ss_pred C------CCCeEEeeCCCCccHHHHHHHHHHHHHhcCCCcCcCeeeecchhhcCCCCCCCCcccCCHHHHHHHhCCCCc-
Confidence 1 237999999999999999999988654 3321 222221 1234667788999999999999986
Q ss_pred cHHHHHHHHHHHH
Q 012176 427 DLAAGLRKFVKWY 439 (469)
Q Consensus 427 ~l~~~l~~~v~~~ 439 (469)
+|+++|+++++.+
T Consensus 281 ~~~~~l~~~~~~~ 293 (299)
T PRK09987 281 DWQVGVKRMLTEL 293 (299)
T ss_pred cHHHHHHHHHHHH
Confidence 9999999999865
|
|
| >PLN02725 GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-40 Score=324.82 Aligned_cols=289 Identities=21% Similarity=0.300 Sum_probs=235.8
Q ss_pred EEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCccEEEEcc
Q 012176 122 LVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTHVLHLA 201 (469)
Q Consensus 122 lVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~d~Vih~A 201 (469)
|||||+||||++|++.|+++|++|+++.+. ..+|+.|.+.+.++++..++|+|||+|
T Consensus 1 lItGa~GfiG~~l~~~L~~~g~~v~~~~~~-----------------------~~~Dl~~~~~l~~~~~~~~~d~Vih~A 57 (306)
T PLN02725 1 FVAGHRGLVGSAIVRKLEALGFTNLVLRTH-----------------------KELDLTRQADVEAFFAKEKPTYVILAA 57 (306)
T ss_pred CcccCCCcccHHHHHHHHhCCCcEEEeecc-----------------------ccCCCCCHHHHHHHHhccCCCEEEEee
Confidence 699999999999999999999998876531 148999999999999988889999999
Q ss_pred cccCh-hhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcCccccCCCCCCCCCCCCC---CCCCCC-hHHHHHHH
Q 012176 202 AQAGV-RYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHR---TDQPAS-LYAATKKA 276 (469)
Q Consensus 202 a~~~~-~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~---~~~p~~-~Y~~sK~~ 276 (469)
+.... .....++...++.|+.++.+++++|++.+++ +||++||..|||.....|++|+++ +..|.+ .|+.+|.+
T Consensus 58 ~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~-~~i~~SS~~vyg~~~~~~~~E~~~~~~~~~p~~~~Y~~sK~~ 136 (306)
T PLN02725 58 AKVGGIHANMTYPADFIRENLQIQTNVIDAAYRHGVK-KLLFLGSSCIYPKFAPQPIPETALLTGPPEPTNEWYAIAKIA 136 (306)
T ss_pred eeecccchhhhCcHHHHHHHhHHHHHHHHHHHHcCCC-eEEEeCceeecCCCCCCCCCHHHhccCCCCCCcchHHHHHHH
Confidence 97542 2334567788999999999999999999986 999999999999776778888763 223433 59999999
Q ss_pred HHHHHHHHHHHhCCcEEEEeecceecCCCCC----CChHHHHH----HHHHcCCceEE-EeeCCCCcceEecccHHHHHH
Q 012176 277 GEEIAHTYNHIYGLALTGLRFFTVYGPWGRP----DMAYFFFT----KDILQGKTIDV-YKTQDDREVARDFTYIDDVVK 347 (469)
Q Consensus 277 ~E~~~~~~~~~~gi~~~ilRp~~v~Gp~~~~----~~~~~~~~----~~~~~g~~~~~-~~~~~~~~~~~~~v~v~Dva~ 347 (469)
+|++++.+++.++++++++||+.||||+... ...++.++ .....+.++.+ + +++++.++|+|++|+++
T Consensus 137 ~e~~~~~~~~~~~~~~~~~R~~~vyG~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~---~~g~~~~~~i~v~Dv~~ 213 (306)
T PLN02725 137 GIKMCQAYRIQYGWDAISGMPTNLYGPHDNFHPENSHVIPALIRRFHEAKANGAPEVVVW---GSGSPLREFLHVDDLAD 213 (306)
T ss_pred HHHHHHHHHHHhCCCEEEEEecceeCCCCCCCCCCCcccHHHHHHHHHHhhcCCCeEEEc---CCCCeeeccccHHHHHH
Confidence 9999999998889999999999999997531 12233333 34456777665 4 66889999999999999
Q ss_pred HHHHHhccCCCCCCCCCceEEEeCCCCcccHHHHHHHHHHHhCCCccceeecCCCCCCCCcccCChHHHHHhcCCCccCc
Q 012176 348 GCVGATGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRNGDVPYTHANVSLAYKDFGYKPTTD 427 (469)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~iyni~~~~~vt~~el~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~~ 427 (469)
+++.++++.. ..+.||+++++.+++.|+++.+.+.++.+..+...+ ++..+.....+|++|++ +|||+|+++
T Consensus 214 ~~~~~~~~~~------~~~~~ni~~~~~~s~~e~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~d~~k~~-~lg~~p~~~ 285 (306)
T PLN02725 214 AVVFLMRRYS------GAEHVNVGSGDEVTIKELAELVKEVVGFEGELVWDT-SKPDGTPRKLMDSSKLR-SLGWDPKFS 285 (306)
T ss_pred HHHHHHhccc------cCcceEeCCCCcccHHHHHHHHHHHhCCCCceeecC-CCCCcccccccCHHHHH-HhCCCCCCC
Confidence 9999987642 226789999999999999999999999876554432 23333445678999996 699999999
Q ss_pred HHHHHHHHHHHHHHHcCC
Q 012176 428 LAAGLRKFVKWYVSYYGI 445 (469)
Q Consensus 428 l~~~l~~~v~~~~~~~~~ 445 (469)
++++|+++++|+.++.+.
T Consensus 286 ~~~~l~~~~~~~~~~~~~ 303 (306)
T PLN02725 286 LKDGLQETYKWYLENYET 303 (306)
T ss_pred HHHHHHHHHHHHHhhhhc
Confidence 999999999999988765
|
|
| >PLN02989 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-40 Score=326.31 Aligned_cols=305 Identities=18% Similarity=0.170 Sum_probs=231.3
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCccE
Q 012176 117 NGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTH 196 (469)
Q Consensus 117 ~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~d~ 196 (469)
.+|+||||||+||||++++++|+++|++|++++|........ ...........+++++.+|++|.+.++++++++ |+
T Consensus 4 ~~k~vlVtG~~G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~-~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~--d~ 80 (325)
T PLN02989 4 GGKVVCVTGASGYIASWIVKLLLFRGYTINATVRDPKDRKKT-DHLLALDGAKERLKLFKADLLDEGSFELAIDGC--ET 80 (325)
T ss_pred CCCEEEEECCchHHHHHHHHHHHHCCCEEEEEEcCCcchhhH-HHHHhccCCCCceEEEeCCCCCchHHHHHHcCC--CE
Confidence 468999999999999999999999999999998865422111 100000001236889999999999999999876 99
Q ss_pred EEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhc-CCCCeEEEEcCccccCCC-----CCCCCCCCCCCCCC----
Q 012176 197 VLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSV-NPQPSIVWASSSSVYGLN-----TQVPFSESHRTDQP---- 266 (469)
Q Consensus 197 Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~-~~~~~~V~~SS~~vyg~~-----~~~~~~E~~~~~~p---- 266 (469)
||||||........+++...+++|+.++.+++++|.+. +.+ +||++||.++|+.. ...+++|+++. .|
T Consensus 81 vih~A~~~~~~~~~~~~~~~~~~n~~g~~~ll~a~~~~~~~~-~iv~~SS~~~~~~~~~~~~~~~~~~E~~~~-~p~~~~ 158 (325)
T PLN02989 81 VFHTASPVAITVKTDPQVELINPAVNGTINVLRTCTKVSSVK-RVILTSSMAAVLAPETKLGPNDVVDETFFT-NPSFAE 158 (325)
T ss_pred EEEeCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHcCCce-EEEEecchhheecCCccCCCCCccCcCCCC-chhHhc
Confidence 99999975443344556788999999999999999875 444 99999998877543 23357777665 33
Q ss_pred --CChHHHHHHHHHHHHHHHHHHhCCcEEEEeecceecCCCCCC-ChHHHHHHHHHcCCceEEEeeCCCCcceEecccHH
Q 012176 267 --ASLYAATKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPD-MAYFFFTKDILQGKTIDVYKTQDDREVARDFTYID 343 (469)
Q Consensus 267 --~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~Gp~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~ 343 (469)
.+.|+.+|.++|.++..+.+++|++++++||++||||+..+. .+...++..+..++.. . ..+.++|+||+
T Consensus 159 ~~~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilR~~~vyGp~~~~~~~~~~~~i~~~~~~~~~--~-----~~~~r~~i~v~ 231 (325)
T PLN02989 159 ERKQWYVLSKTLAEDAAWRFAKDNEIDLIVLNPGLVTGPILQPTLNFSVAVIVELMKGKNP--F-----NTTHHRFVDVR 231 (325)
T ss_pred ccccchHHHHHHHHHHHHHHHHHcCCeEEEEcCCceeCCCCCCCCCchHHHHHHHHcCCCC--C-----CCcCcCeeEHH
Confidence 467999999999999999988899999999999999987653 2444556666666643 2 13457999999
Q ss_pred HHHHHHHHHhccCCCCCCCCCceEEEeCCCCcccHHHHHHHHHHHhCCCccceeecC-CCCCCCCcccCChHHHHHhcCC
Q 012176 344 DVVKGCVGATGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRM-PRNGDVPYTHANVSLAYKDFGY 422 (469)
Q Consensus 344 Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~~vt~~el~~~i~~~~g~~~~~~~~~~-~~~~~~~~~~~d~~ka~~~LG~ 422 (469)
|+|++++.+++++. .+++||+++ ..+|+.|+++.+.+.++... ....+. ....+...+..|.+|+++ |||
T Consensus 232 Dva~a~~~~l~~~~------~~~~~ni~~-~~~s~~ei~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~k~~~-lg~ 302 (325)
T PLN02989 232 DVALAHVKALETPS------ANGRYIIDG-PVVTIKDIENVLREFFPDLC-IADRNEDITELNSVTFNVCLDKVKS-LGI 302 (325)
T ss_pred HHHHHHHHHhcCcc------cCceEEEec-CCCCHHHHHHHHHHHCCCCC-CCCCCCCcccccccCcCCCHHHHHH-cCC
Confidence 99999999988752 136899954 57999999999999998422 111010 001122356788999875 999
Q ss_pred CccCcHHHHHHHHHHHHHHH
Q 012176 423 KPTTDLAAGLRKFVKWYVSY 442 (469)
Q Consensus 423 ~p~~~l~~~l~~~v~~~~~~ 442 (469)
+|.++++++|+++++||++.
T Consensus 303 ~p~~~l~~gi~~~~~~~~~~ 322 (325)
T PLN02989 303 IEFTPTETSLRDTVLSLKEK 322 (325)
T ss_pred CCCCCHHHHHHHHHHHHHHh
Confidence 99999999999999998653
|
|
| >PLN02214 cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=327.35 Aligned_cols=299 Identities=22% Similarity=0.246 Sum_probs=229.8
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhc-cCCeEEEEecCCCHHHHHHhhccCCc
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQ-KHQVFIVEGDLNDAPLLTKLFDVVPF 194 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~v~~v~~Dl~d~~~l~~~~~~~~~ 194 (469)
.++|+||||||+||||++|+++|+++|++|++++|..+.... ........ ..+++++.+|++|.+.+.++++++
T Consensus 8 ~~~~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~---~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~-- 82 (342)
T PLN02214 8 PAGKTVCVTGAGGYIASWIVKILLERGYTVKGTVRNPDDPKN---THLRELEGGKERLILCKADLQDYEALKAAIDGC-- 82 (342)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCchhhhH---HHHHHhhCCCCcEEEEecCcCChHHHHHHHhcC--
Confidence 456899999999999999999999999999999986432111 00111111 236889999999999999999987
Q ss_pred cEEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcCc-cccCCCCC---CCCCCCCC-----CCC
Q 012176 195 THVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSS-SVYGLNTQ---VPFSESHR-----TDQ 265 (469)
Q Consensus 195 d~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS~-~vyg~~~~---~~~~E~~~-----~~~ 265 (469)
|+|||+|+.. ..++...++.|+.++.+++++|++.+++ +||++||. ++||.... .+++|+++ +..
T Consensus 83 d~Vih~A~~~-----~~~~~~~~~~nv~gt~~ll~aa~~~~v~-r~V~~SS~~avyg~~~~~~~~~~~E~~~~~~~~~~~ 156 (342)
T PLN02214 83 DGVFHTASPV-----TDDPEQMVEPAVNGAKFVINAAAEAKVK-RVVITSSIGAVYMDPNRDPEAVVDESCWSDLDFCKN 156 (342)
T ss_pred CEEEEecCCC-----CCCHHHHHHHHHHHHHHHHHHHHhcCCC-EEEEeccceeeeccCCCCCCcccCcccCCChhhccc
Confidence 9999999974 2467888999999999999999999886 99999995 68874332 35777752 224
Q ss_pred CCChHHHHHHHHHHHHHHHHHHhCCcEEEEeecceecCCCCCC--ChHHHHHHHHHcCCceEEEeeCCCCcceEecccHH
Q 012176 266 PASLYAATKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPD--MAYFFFTKDILQGKTIDVYKTQDDREVARDFTYID 343 (469)
Q Consensus 266 p~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~Gp~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~ 343 (469)
|.+.|+.+|.++|.+++.+++++|++++++||++||||+..+. ..+..++ .++.|.... + +++.++|+||+
T Consensus 157 p~~~Y~~sK~~aE~~~~~~~~~~g~~~v~lRp~~vyGp~~~~~~~~~~~~~~-~~~~g~~~~-~-----~~~~~~~i~V~ 229 (342)
T PLN02214 157 TKNWYCYGKMVAEQAAWETAKEKGVDLVVLNPVLVLGPPLQPTINASLYHVL-KYLTGSAKT-Y-----ANLTQAYVDVR 229 (342)
T ss_pred cccHHHHHHHHHHHHHHHHHHHcCCcEEEEeCCceECCCCCCCCCchHHHHH-HHHcCCccc-C-----CCCCcCeeEHH
Confidence 6788999999999999999988899999999999999976542 1222333 344555432 2 35678999999
Q ss_pred HHHHHHHHHhccCCCCCCCCCceEEEeCCCCcccHHHHHHHHHHHhCCC-ccceeecCCCCCCCCcccCChHHHHHhcCC
Q 012176 344 DVVKGCVGATGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTK-AKKHVIRMPRNGDVPYTHANVSLAYKDFGY 422 (469)
Q Consensus 344 Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~~vt~~el~~~i~~~~g~~-~~~~~~~~~~~~~~~~~~~d~~ka~~~LG~ 422 (469)
|+|++++.+++++. .++.||+++ ..+++.|+++.+.+.++.. .... .......+.....+|++|++ +|||
T Consensus 230 Dva~a~~~al~~~~------~~g~yn~~~-~~~~~~el~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~d~~k~~-~LG~ 300 (342)
T PLN02214 230 DVALAHVLVYEAPS------ASGRYLLAE-SARHRGEVVEILAKLFPEYPLPTK-CKDEKNPRAKPYKFTNQKIK-DLGL 300 (342)
T ss_pred HHHHHHHHHHhCcc------cCCcEEEec-CCCCHHHHHHHHHHHCCCCCCCCC-CccccCCCCCccccCcHHHH-HcCC
Confidence 99999999998752 136899987 4689999999999999632 1111 11112334445568999997 5999
Q ss_pred CccCcHHHHHHHHHHHHHHH
Q 012176 423 KPTTDLAAGLRKFVKWYVSY 442 (469)
Q Consensus 423 ~p~~~l~~~l~~~v~~~~~~ 442 (469)
+|. +++|+|+++++||++.
T Consensus 301 ~p~-~lee~i~~~~~~~~~~ 319 (342)
T PLN02214 301 EFT-STKQSLYDTVKSLQEK 319 (342)
T ss_pred ccc-CHHHHHHHHHHHHHHc
Confidence 995 9999999999999765
|
|
| >COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-39 Score=316.29 Aligned_cols=303 Identities=33% Similarity=0.507 Sum_probs=251.4
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCccEEE
Q 012176 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTHVL 198 (469)
Q Consensus 119 ~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~d~Vi 198 (469)
|+||||||+||||++|+++|+++||+|++++|......... .++.++.+|++|.+.+.++++.++ |+||
T Consensus 1 ~~ILVtG~tGfiG~~l~~~L~~~g~~V~~~~r~~~~~~~~~----------~~~~~~~~d~~~~~~~~~~~~~~~-d~vi 69 (314)
T COG0451 1 MRILVTGGAGFIGSHLVERLLAAGHDVRGLDRLRDGLDPLL----------SGVEFVVLDLTDRDLVDELAKGVP-DAVI 69 (314)
T ss_pred CeEEEEcCcccHHHHHHHHHHhCCCeEEEEeCCCccccccc----------cccceeeecccchHHHHHHHhcCC-CEEE
Confidence 35999999999999999999999999999999665332221 478899999999988888888776 9999
Q ss_pred EcccccChhhhcc-ChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcCccccCCC-CCCCCCCC-CCCCCCCChHHHHHH
Q 012176 199 HLAAQAGVRYAMQ-NPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLN-TQVPFSES-HRTDQPASLYAATKK 275 (469)
Q Consensus 199 h~Aa~~~~~~~~~-~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS~~vyg~~-~~~~~~E~-~~~~~p~~~Y~~sK~ 275 (469)
|+|+......... ++...++.|+.++.+++++|++.+++ +|||.||.++|+.. ...+++|+ .+. .|.+.|+.+|.
T Consensus 70 h~aa~~~~~~~~~~~~~~~~~~nv~gt~~ll~aa~~~~~~-~~v~~ss~~~~~~~~~~~~~~E~~~~~-~p~~~Yg~sK~ 147 (314)
T COG0451 70 HLAAQSSVPDSNASDPAEFLDVNVDGTLNLLEAARAAGVK-RFVFASSVSVVYGDPPPLPIDEDLGPP-RPLNPYGVSKL 147 (314)
T ss_pred EccccCchhhhhhhCHHHHHHHHHHHHHHHHHHHHHcCCC-eEEEeCCCceECCCCCCCCcccccCCC-CCCCHHHHHHH
Confidence 9999866543333 46679999999999999999998876 99998888877755 33367777 444 66679999999
Q ss_pred HHHHHHHHHHHHhCCcEEEEeecceecCCCCCC---ChHHHHHHHHHcCCc-eEEEeeCCCCcceEecccHHHHHHHHHH
Q 012176 276 AGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPD---MAYFFFTKDILQGKT-IDVYKTQDDREVARDFTYIDDVVKGCVG 351 (469)
Q Consensus 276 ~~E~~~~~~~~~~gi~~~ilRp~~v~Gp~~~~~---~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~v~v~Dva~~~~~ 351 (469)
++|+.++.+...+|++++++||+.||||+.... .....++..+.++.+ +.+. ++++..++++|++|++++++.
T Consensus 148 ~~E~~~~~~~~~~~~~~~ilR~~~vyGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~i~v~D~a~~~~~ 224 (314)
T COG0451 148 AAEQLLRAYARLYGLPVVILRPFNVYGPGDKPDLSSGVVSAFIRQLLKGEPIIVIG---GDGSQTRDFVYVDDVADALLL 224 (314)
T ss_pred HHHHHHHHHHHHhCCCeEEEeeeeeeCCCCCCCCCcCcHHHHHHHHHhCCCcceEe---CCCceeEeeEeHHHHHHHHHH
Confidence 999999999988899999999999999988766 556666777888887 4444 667888999999999999999
Q ss_pred HhccCCCCCCCCCceEEEeCCCC-cccHHHHHHHHHHHhCCCcc-ceeecC-CCCCCCCcccCChHHHHHhcCCCccCcH
Q 012176 352 ATGSGGKKRGPAQLRVYNLGNTS-PVPVGRLVSILENLLNTKAK-KHVIRM-PRNGDVPYTHANVSLAYKDFGYKPTTDL 428 (469)
Q Consensus 352 ~~~~~~~~~~~~~~~iyni~~~~-~vt~~el~~~i~~~~g~~~~-~~~~~~-~~~~~~~~~~~d~~ka~~~LG~~p~~~l 428 (469)
+++++.. .+||++++. ++++.|+++.+.+.+|.+.. ....+. ...........|.+|++.+|||+|.+++
T Consensus 225 ~~~~~~~-------~~~ni~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~p~~~~ 297 (314)
T COG0451 225 ALENPDG-------GVFNIGSGTAEITVRELAEAVAEAVGSKAPLIVYIPLGRRGDLREGKLLDISKARAALGWEPKVSL 297 (314)
T ss_pred HHhCCCC-------cEEEeCCCCCcEEHHHHHHHHHHHhCCCCcceeecCCCCCCcccccccCCHHHHHHHhCCCCCCCH
Confidence 9998731 199999997 89999999999999999876 333332 2334455667899999999999999999
Q ss_pred HHHHHHHHHHHHHHcC
Q 012176 429 AAGLRKFVKWYVSYYG 444 (469)
Q Consensus 429 ~~~l~~~v~~~~~~~~ 444 (469)
++++.++++|+.....
T Consensus 298 ~~~i~~~~~~~~~~~~ 313 (314)
T COG0451 298 EEGLADTLEWLLKKLE 313 (314)
T ss_pred HHHHHHHHHHHHHhhc
Confidence 9999999999987643
|
|
| >PRK11150 rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-39 Score=322.18 Aligned_cols=291 Identities=21% Similarity=0.310 Sum_probs=222.0
Q ss_pred EEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHH---H-HHHhhcc---CC
Q 012176 121 VLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAP---L-LTKLFDV---VP 193 (469)
Q Consensus 121 VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~---~-l~~~~~~---~~ 193 (469)
||||||+||||++|+++|+++|++|+++.|...... . .. ....+|+.|.. . +++++++ .+
T Consensus 2 ilVtGa~GfiG~~l~~~L~~~g~~~v~~~~~~~~~~---~--~~--------~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 68 (308)
T PRK11150 2 IIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGT---K--FV--------NLVDLDIADYMDKEDFLAQIMAGDDFGD 68 (308)
T ss_pred EEEecCCcHHHHHHHHHHHhCCCceEEEecCCCcch---H--HH--------hhhhhhhhhhhhHHHHHHHHhcccccCC
Confidence 899999999999999999999998777665433210 0 00 11234555443 2 3444432 25
Q ss_pred ccEEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcCccccCCCCCCCCCCCCCCCCCCChHHHH
Q 012176 194 FTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAAT 273 (469)
Q Consensus 194 ~d~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y~~s 273 (469)
+|+|||+||..... ..+++.+++.|+.++.+|+++|++.+. +|||+||.++||.....+.+|+++. .|.+.|+.+
T Consensus 69 ~d~Vih~A~~~~~~--~~~~~~~~~~n~~~t~~ll~~~~~~~~--~~i~~SS~~vyg~~~~~~~~E~~~~-~p~~~Y~~s 143 (308)
T PRK11150 69 IEAIFHEGACSSTT--EWDGKYMMDNNYQYSKELLHYCLEREI--PFLYASSAATYGGRTDDFIEEREYE-KPLNVYGYS 143 (308)
T ss_pred ccEEEECceecCCc--CCChHHHHHHHHHHHHHHHHHHHHcCC--cEEEEcchHHhCcCCCCCCccCCCC-CCCCHHHHH
Confidence 79999999864432 234566899999999999999999885 6999999999997655566666655 788999999
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEeecceecCCCCCCC----hHHHHHHHHHcCCceEEEeeCCCCcceEecccHHHHHHHH
Q 012176 274 KKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPDM----AYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGC 349 (469)
Q Consensus 274 K~~~E~~~~~~~~~~gi~~~ilRp~~v~Gp~~~~~~----~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~~~ 349 (469)
|.++|++++.++..++++++++||++||||+..+.. ....+.+.+.+|.+..++. ++++..++|+||+|+|+++
T Consensus 144 K~~~E~~~~~~~~~~~~~~~~lR~~~vyG~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~--g~~~~~r~~i~v~D~a~a~ 221 (308)
T PRK11150 144 KFLFDEYVRQILPEANSQICGFRYFNVYGPREGHKGSMASVAFHLNNQLNNGENPKLFE--GSENFKRDFVYVGDVAAVN 221 (308)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeeeeecCCCCCCCCccchhHHHHHHHHhcCCCCEEec--CCCceeeeeeeHHHHHHHH
Confidence 999999999998888999999999999999865432 2345557788887666653 5667899999999999999
Q ss_pred HHHhccCCCCCCCCCceEEEeCCCCcccHHHHHHHHHHHhCCCccceeecCCCC--C-CCCcccCChHHHHHhcCCCcc-
Q 012176 350 VGATGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRN--G-DVPYTHANVSLAYKDFGYKPT- 425 (469)
Q Consensus 350 ~~~~~~~~~~~~~~~~~iyni~~~~~vt~~el~~~i~~~~g~~~~~~~~~~~~~--~-~~~~~~~d~~ka~~~LG~~p~- 425 (469)
+.+++... +++||+++++++++.|+++.+.+.+|.. .+...+.+.. + ......+|++|+++ +||+|+
T Consensus 222 ~~~~~~~~-------~~~yni~~~~~~s~~el~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~d~~k~~~-~g~~p~~ 292 (308)
T PRK11150 222 LWFWENGV-------SGIFNCGTGRAESFQAVADAVLAYHKKG-EIEYIPFPDKLKGRYQAFTQADLTKLRA-AGYDKPF 292 (308)
T ss_pred HHHHhcCC-------CCeEEcCCCCceeHHHHHHHHHHHhCCC-cceeccCccccccccceecccCHHHHHh-cCCCCCC
Confidence 99887531 3799999999999999999999999853 2333333332 1 12345789999985 799997
Q ss_pred CcHHHHHHHHHHHHH
Q 012176 426 TDLAAGLRKFVKWYV 440 (469)
Q Consensus 426 ~~l~~~l~~~v~~~~ 440 (469)
++++++|+++++|+.
T Consensus 293 ~~~~~gl~~~~~~~~ 307 (308)
T PRK11150 293 KTVAEGVAEYMAWLN 307 (308)
T ss_pred CCHHHHHHHHHHHhh
Confidence 599999999999975
|
|
| >PLN00016 RNA-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-39 Score=328.60 Aligned_cols=303 Identities=18% Similarity=0.191 Sum_probs=237.0
Q ss_pred CCCCEEEEE----cCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHH--HHHHhhccCCeEEEEecCCCHHHHHHhh
Q 012176 116 PNGMTVLVT----GAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKR--ARQKLLQKHQVFIVEGDLNDAPLLTKLF 189 (469)
Q Consensus 116 ~~~~~VlVt----GatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~--~~~~~~~~~~v~~v~~Dl~d~~~l~~~~ 189 (469)
..+|+|||| |||||||++|+++|+++||+|++++|........... .....+...+++++.+|+.| +++++
T Consensus 50 ~~~~~VLVt~~~~GatG~iG~~lv~~L~~~G~~V~~l~R~~~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d---~~~~~ 126 (378)
T PLN00016 50 VEKKKVLIVNTNSGGHAFIGFYLAKELVKAGHEVTLFTRGKEPSQKMKKEPFSRFSELSSAGVKTVWGDPAD---VKSKV 126 (378)
T ss_pred cccceEEEEeccCCCceeEhHHHHHHHHHCCCEEEEEecCCcchhhhccCchhhhhHhhhcCceEEEecHHH---HHhhh
Confidence 445789999 9999999999999999999999999976532111000 00011223468999999877 55666
Q ss_pred ccCCccEEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcCccccCCCCCCCCCCCCCCCCCCCh
Q 012176 190 DVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASL 269 (469)
Q Consensus 190 ~~~~~d~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~ 269 (469)
...++|+|||+++. ++.++.+++++|++.|++ +|||+||.++|+.....|+.|+++. .|..
T Consensus 127 ~~~~~d~Vi~~~~~----------------~~~~~~~ll~aa~~~gvk-r~V~~SS~~vyg~~~~~p~~E~~~~-~p~~- 187 (378)
T PLN00016 127 AGAGFDVVYDNNGK----------------DLDEVEPVADWAKSPGLK-QFLFCSSAGVYKKSDEPPHVEGDAV-KPKA- 187 (378)
T ss_pred ccCCccEEEeCCCC----------------CHHHHHHHHHHHHHcCCC-EEEEEccHhhcCCCCCCCCCCCCcC-CCcc-
Confidence 55567999999764 245788999999999987 9999999999998766688887765 3433
Q ss_pred HHHHHHHHHHHHHHHHHHhCCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceEecccHHHHHHHH
Q 012176 270 YAATKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGC 349 (469)
Q Consensus 270 Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~~~ 349 (469)
+|..+|.++++ .+++++++||+++|||+... ....+++..+..++++.++ +++++.++|+|++|+|+++
T Consensus 188 ---sK~~~E~~l~~----~~l~~~ilRp~~vyG~~~~~-~~~~~~~~~~~~~~~i~~~---g~g~~~~~~i~v~Dva~ai 256 (378)
T PLN00016 188 ---GHLEVEAYLQK----LGVNWTSFRPQYIYGPGNNK-DCEEWFFDRLVRGRPVPIP---GSGIQLTQLGHVKDLASMF 256 (378)
T ss_pred ---hHHHHHHHHHH----cCCCeEEEeceeEECCCCCC-chHHHHHHHHHcCCceeec---CCCCeeeceecHHHHHHHH
Confidence 89999987764 58999999999999997653 3456778888899888777 6788999999999999999
Q ss_pred HHHhccCCCCCCCCCceEEEeCCCCcccHHHHHHHHHHHhCCCccceeecCCCC---------CCCCcccCChHHHHHhc
Q 012176 350 VGATGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRN---------GDVPYTHANVSLAYKDF 420 (469)
Q Consensus 350 ~~~~~~~~~~~~~~~~~iyni~~~~~vt~~el~~~i~~~~g~~~~~~~~~~~~~---------~~~~~~~~d~~ka~~~L 420 (469)
+.+++++ ...+++||+++++.+|+.|+++.+.+.+|.+..+...+.... .....+..|++|++++|
T Consensus 257 ~~~l~~~-----~~~~~~yni~~~~~~s~~el~~~i~~~~g~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~d~~ka~~~L 331 (378)
T PLN00016 257 ALVVGNP-----KAAGQIFNIVSDRAVTFDGMAKACAKAAGFPEEIVHYDPKAVGFGAKKAFPFRDQHFFASPRKAKEEL 331 (378)
T ss_pred HHHhcCc-----cccCCEEEecCCCccCHHHHHHHHHHHhCCCCceeecCccccCccccccccccccccccCHHHHHHhc
Confidence 9999875 234599999999999999999999999998875544332211 12234457999999999
Q ss_pred CCCccCcHHHHHHHHHHHHHHHcCCCCcccccCCcccccc
Q 012176 421 GYKPTTDLAAGLRKFVKWYVSYYGIQPRVKKENGFSTTTS 460 (469)
Q Consensus 421 G~~p~~~l~~~l~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 460 (469)
||+|+++++|+|+++++||.+....+ ++..|...+-
T Consensus 332 Gw~p~~~l~egl~~~~~~~~~~~~~~----~~~~~~~~~~ 367 (378)
T PLN00016 332 GWTPKFDLVEDLKDRYELYFGRGRDR----KEADFETDDK 367 (378)
T ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCc----cccCccccHH
Confidence 99999999999999999999887664 5556655443
|
|
| >PLN02662 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-39 Score=318.83 Aligned_cols=301 Identities=21% Similarity=0.237 Sum_probs=228.1
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhh-ccCCeEEEEecCCCHHHHHHhhccCCcc
Q 012176 117 NGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLL-QKHQVFIVEGDLNDAPLLTKLFDVVPFT 195 (469)
Q Consensus 117 ~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~v~~v~~Dl~d~~~l~~~~~~~~~d 195 (469)
++|+||||||+||||++|+++|+++|++|++++|+...... ........ ...+++++.+|++|++.+.++++++ |
T Consensus 3 ~~~~ilVtGatGfIG~~l~~~L~~~g~~V~~~~r~~~~~~~--~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~--d 78 (322)
T PLN02662 3 EGKVVCVTGASGYIASWLVKLLLQRGYTVKATVRDPNDPKK--TEHLLALDGAKERLHLFKANLLEEGSFDSVVDGC--E 78 (322)
T ss_pred CCCEEEEECChHHHHHHHHHHHHHCCCEEEEEEcCCCchhh--HHHHHhccCCCCceEEEeccccCcchHHHHHcCC--C
Confidence 46899999999999999999999999999999986542111 01000010 1247899999999999999999977 9
Q ss_pred EEEEcccccChhhhccChH-HHHHHHHHHHHHHHHHHHhc-CCCCeEEEEcCcc--ccCCC---CCCCCCCCCCCCCC--
Q 012176 196 HVLHLAAQAGVRYAMQNPQ-SYVASNIAGFVNLLEVCKSV-NPQPSIVWASSSS--VYGLN---TQVPFSESHRTDQP-- 266 (469)
Q Consensus 196 ~Vih~Aa~~~~~~~~~~~~-~~~~~Nv~~~~~ll~aa~~~-~~~~~~V~~SS~~--vyg~~---~~~~~~E~~~~~~p-- 266 (469)
+|||+|+... ....++. .++++|+.++.+++++|++. +++ +|||+||.+ +|+.. ...+++|+.+. .|
T Consensus 79 ~Vih~A~~~~--~~~~~~~~~~~~~nv~gt~~ll~a~~~~~~~~-~~v~~SS~~~~~y~~~~~~~~~~~~E~~~~-~p~~ 154 (322)
T PLN02662 79 GVFHTASPFY--HDVTDPQAELIDPAVKGTLNVLRSCAKVPSVK-RVVVTSSMAAVAYNGKPLTPDVVVDETWFS-DPAF 154 (322)
T ss_pred EEEEeCCccc--CCCCChHHHHHHHHHHHHHHHHHHHHhCCCCC-EEEEccCHHHhcCCCcCCCCCCcCCcccCC-ChhH
Confidence 9999998743 2223444 78899999999999999887 766 999999976 46532 22356776543 33
Q ss_pred ----CChHHHHHHHHHHHHHHHHHHhCCcEEEEeecceecCCCCCC-ChHHHHHHHHHcCCceEEEeeCCCCcceEeccc
Q 012176 267 ----ASLYAATKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPD-MAYFFFTKDILQGKTIDVYKTQDDREVARDFTY 341 (469)
Q Consensus 267 ----~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~Gp~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~ 341 (469)
.+.|+.+|..+|++++.+.++++++++++||++||||+..+. .....++..++.|.+. . +++.++|+|
T Consensus 155 ~~~~~~~Y~~sK~~~E~~~~~~~~~~~~~~~~lRp~~v~Gp~~~~~~~~~~~~~~~~~~~~~~--~-----~~~~~~~i~ 227 (322)
T PLN02662 155 CEESKLWYVLSKTLAEEAAWKFAKENGIDMVTINPAMVIGPLLQPTLNTSAEAILNLINGAQT--F-----PNASYRWVD 227 (322)
T ss_pred hhcccchHHHHHHHHHHHHHHHHHHcCCcEEEEeCCcccCCCCCCCCCchHHHHHHHhcCCcc--C-----CCCCcCeEE
Confidence 358999999999999999988899999999999999976543 2334455566666542 2 346799999
Q ss_pred HHHHHHHHHHHhccCCCCCCCCCceEEEeCCCCcccHHHHHHHHHHHhCCCccceeecCCCCCCCCcccCChHHHHHhcC
Q 012176 342 IDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRNGDVPYTHANVSLAYKDFG 421 (469)
Q Consensus 342 v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~~vt~~el~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~d~~ka~~~LG 421 (469)
|+|+|++++.+++++.. ++.||++ ++++++.|+++.+.+.++....... ..+...+......|++|++ +||
T Consensus 228 v~Dva~a~~~~~~~~~~------~~~~~~~-g~~~s~~e~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~d~~k~~-~lg 298 (322)
T PLN02662 228 VRDVANAHIQAFEIPSA------SGRYCLV-ERVVHYSEVVKILHELYPTLQLPEK-CADDKPYVPTYQVSKEKAK-SLG 298 (322)
T ss_pred HHHHHHHHHHHhcCcCc------CCcEEEe-CCCCCHHHHHHHHHHHCCCCCCCCC-CCCccccccccccChHHHH-HhC
Confidence 99999999999987521 2578887 4679999999999999874221111 1112234456779999998 599
Q ss_pred CCccCcHHHHHHHHHHHHHHH
Q 012176 422 YKPTTDLAAGLRKFVKWYVSY 442 (469)
Q Consensus 422 ~~p~~~l~~~l~~~v~~~~~~ 442 (469)
|++ ++++++|+++++||++.
T Consensus 299 ~~~-~~~~~~l~~~~~~~~~~ 318 (322)
T PLN02662 299 IEF-IPLEVSLKDTVESLKEK 318 (322)
T ss_pred Ccc-ccHHHHHHHHHHHHHHc
Confidence 997 59999999999999754
|
|
| >PLN02896 cinnamyl-alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-38 Score=319.43 Aligned_cols=313 Identities=18% Similarity=0.217 Sum_probs=225.6
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCc
Q 012176 115 RPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPF 194 (469)
Q Consensus 115 ~~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~ 194 (469)
..++|+||||||+||||++++++|+++|++|++++|..... ...........+++++.+|++|.+.+.+++++.
T Consensus 7 ~~~~~~vLVtG~~GfIG~~l~~~L~~~G~~V~~~~r~~~~~----~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~-- 80 (353)
T PLN02896 7 ESATGTYCVTGATGYIGSWLVKLLLQRGYTVHATLRDPAKS----LHLLSKWKEGDRLRLFRADLQEEGSFDEAVKGC-- 80 (353)
T ss_pred ccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChHHH----HHHHHhhccCCeEEEEECCCCCHHHHHHHHcCC--
Confidence 36789999999999999999999999999999998854211 111111112346889999999999999999876
Q ss_pred cEEEEcccccChhh--hccChHH-----HHHHHHHHHHHHHHHHHhcC-CCCeEEEEcCccccCCCC-----CCCCCCCC
Q 012176 195 THVLHLAAQAGVRY--AMQNPQS-----YVASNIAGFVNLLEVCKSVN-PQPSIVWASSSSVYGLNT-----QVPFSESH 261 (469)
Q Consensus 195 d~Vih~Aa~~~~~~--~~~~~~~-----~~~~Nv~~~~~ll~aa~~~~-~~~~~V~~SS~~vyg~~~-----~~~~~E~~ 261 (469)
|+|||+|+...... ...++.. +++.|+.++.+++++|++.+ ++ +||++||.++||... ..+++|+.
T Consensus 81 d~Vih~A~~~~~~~~~~~~~~~~~~~~n~~~~~~~g~~~ll~~~~~~~~~~-~~v~~SS~~vyg~~~~~~~~~~~~~E~~ 159 (353)
T PLN02896 81 DGVFHVAASMEFDVSSDHNNIEEYVQSKVIDPAIKGTLNVLKSCLKSKTVK-RVVFTSSISTLTAKDSNGRWRAVVDETC 159 (353)
T ss_pred CEEEECCccccCCccccccchhhhhhHHhHHHHHHHHHHHHHHHHhcCCcc-EEEEEechhhccccccCCCCCCccCccc
Confidence 99999999754432 2234443 44556799999999998875 54 999999999998532 13566653
Q ss_pred CC--------CCCCChHHHHHHHHHHHHHHHHHHhCCcEEEEeecceecCCCCCCC--hHHHHHHHHHcCCceE--EEee
Q 012176 262 RT--------DQPASLYAATKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPDM--AYFFFTKDILQGKTID--VYKT 329 (469)
Q Consensus 262 ~~--------~~p~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~Gp~~~~~~--~~~~~~~~~~~g~~~~--~~~~ 329 (469)
+. ..+.++|+.+|.++|+++..+++.++++++++||++||||+..... .+..+.. ...|.... ....
T Consensus 160 ~~p~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~~~~~~~lR~~~vyGp~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~ 238 (353)
T PLN02896 160 QTPIDHVWNTKASGWVYVLSKLLTEEAAFKYAKENGIDLVSVITTTVAGPFLTPSVPSSIQVLLS-PITGDSKLFSILSA 238 (353)
T ss_pred CCcHHHhhccCCCCccHHHHHHHHHHHHHHHHHHcCCeEEEEcCCcccCCCcCCCCCchHHHHHH-HhcCCccccccccc
Confidence 21 1244589999999999999999989999999999999999765431 1222222 22343221 1110
Q ss_pred CCCCcceEecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCCcccHHHHHHHHHHHhCCC-ccceeecCCCCCCCCc
Q 012176 330 QDDREVARDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTK-AKKHVIRMPRNGDVPY 408 (469)
Q Consensus 330 ~~~~~~~~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~~vt~~el~~~i~~~~g~~-~~~~~~~~~~~~~~~~ 408 (469)
.+.....++|+||+|+|++++.+++.+. .+++|++ ++.++++.|+++.+.+.++.. ..... ..+..++..
T Consensus 239 ~~~~~~~~dfi~v~Dva~a~~~~l~~~~------~~~~~~~-~~~~~s~~el~~~i~~~~~~~~~~~~~-~~~~~~~~~- 309 (353)
T PLN02896 239 VNSRMGSIALVHIEDICDAHIFLMEQTK------AEGRYIC-CVDSYDMSELINHLSKEYPCSNIQVRL-DEEKRGSIP- 309 (353)
T ss_pred cccccCceeEEeHHHHHHHHHHHHhCCC------cCccEEe-cCCCCCHHHHHHHHHHhCCCCCccccc-cccccCccc-
Confidence 0111234799999999999999997642 1257865 557799999999999999743 22221 222333333
Q ss_pred ccCChHHHHHhcCCCccCcHHHHHHHHHHHHHHHcCC
Q 012176 409 THANVSLAYKDFGYKPTTDLAAGLRKFVKWYVSYYGI 445 (469)
Q Consensus 409 ~~~d~~ka~~~LG~~p~~~l~~~l~~~v~~~~~~~~~ 445 (469)
...|.++++ +|||+|+++++++|+++++||+++...
T Consensus 310 ~~~~~~~~~-~lGw~p~~~l~~~i~~~~~~~~~~~~~ 345 (353)
T PLN02896 310 SEISSKKLR-DLGFEYKYGIEEIIDQTIDCCVDHGFL 345 (353)
T ss_pred cccCHHHHH-HcCCCccCCHHHHHHHHHHHHHHCCCC
Confidence 356888886 599999999999999999999988764
|
|
| >TIGR02197 heptose_epim ADP-L-glycero-D-manno-heptose-6-epimerase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-38 Score=313.17 Aligned_cols=298 Identities=24% Similarity=0.393 Sum_probs=237.3
Q ss_pred EEEEcCCChhHHHHHHHHHHCCC-cEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhcc--CCccEE
Q 012176 121 VLVTGAAGFVGSHCSLALKKRGD-GVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDV--VPFTHV 197 (469)
Q Consensus 121 VlVtGatG~IG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~--~~~d~V 197 (469)
||||||+||||+++++.|+++|+ +|++++|..... .. .. .....+.+|+.+.+.++.+.+. .++|+|
T Consensus 1 ilItGatG~iG~~l~~~L~~~g~~~v~~~~~~~~~~--~~----~~----~~~~~~~~d~~~~~~~~~~~~~~~~~~D~v 70 (314)
T TIGR02197 1 IIVTGGAGFIGSNLVKALNERGITDILVVDNLRDGH--KF----LN----LADLVIADYIDKEDFLDRLEKGAFGKIEAI 70 (314)
T ss_pred CEEeCCcchhhHHHHHHHHHcCCceEEEEecCCCch--hh----hh----hhheeeeccCcchhHHHHHHhhccCCCCEE
Confidence 69999999999999999999998 798888754311 00 00 0123567889888888877652 356999
Q ss_pred EEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcCccccCCCCCCCCCCCCCCCCCCChHHHHHHHH
Q 012176 198 LHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAG 277 (469)
Q Consensus 198 ih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y~~sK~~~ 277 (469)
||+|+... ....++...+++|+.++.+++++|++.+. +||++||.++|+.... +++|+++...|.+.|+.+|..+
T Consensus 71 vh~A~~~~--~~~~~~~~~~~~n~~~~~~ll~~~~~~~~--~~v~~SS~~vy~~~~~-~~~e~~~~~~p~~~Y~~sK~~~ 145 (314)
T TIGR02197 71 FHQGACSD--TTETDGEYMMENNYQYSKRLLDWCAEKGI--PFIYASSAATYGDGEA-GFREGRELERPLNVYGYSKFLF 145 (314)
T ss_pred EECccccC--ccccchHHHHHHHHHHHHHHHHHHHHhCC--cEEEEccHHhcCCCCC-CcccccCcCCCCCHHHHHHHHH
Confidence 99999743 33457778899999999999999999875 7999999999987643 6777776546888999999999
Q ss_pred HHHHHHHHH--HhCCcEEEEeecceecCCCCCC----ChHHHHHHHHHcCCceEEEee---CCCCcceEecccHHHHHHH
Q 012176 278 EEIAHTYNH--IYGLALTGLRFFTVYGPWGRPD----MAYFFFTKDILQGKTIDVYKT---QDDREVARDFTYIDDVVKG 348 (469)
Q Consensus 278 E~~~~~~~~--~~gi~~~ilRp~~v~Gp~~~~~----~~~~~~~~~~~~g~~~~~~~~---~~~~~~~~~~v~v~Dva~~ 348 (469)
|.+++++.. ..+++++++||+.||||+.... ..+..++..+..++++.++.. .+++++.++|+|++|++++
T Consensus 146 e~~~~~~~~~~~~~~~~~~lR~~~vyG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~D~a~~ 225 (314)
T TIGR02197 146 DQYVRRRVLPEALSAQVVGLRYFNVYGPREYHKGKMASVAFHLFNQIKAGGNVKLFKSSEGFKDGEQLRDFVYVKDVVDV 225 (314)
T ss_pred HHHHHHHhHhhccCCceEEEEEeeccCCCCCCCCCcccHHHHHHHHHhcCCCeEEecCccccCCCCceeeeEEHHHHHHH
Confidence 999998643 2467999999999999975432 345677888888888877531 1457888999999999999
Q ss_pred HHHHhccCCCCCCCCCceEEEeCCCCcccHHHHHHHHHHHhCCCccceeecCCCCC---CCCcccCChHHHHHhcCCCcc
Q 012176 349 CVGATGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRNG---DVPYTHANVSLAYKDFGYKPT 425 (469)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~iyni~~~~~vt~~el~~~i~~~~g~~~~~~~~~~~~~~---~~~~~~~d~~ka~~~LG~~p~ 425 (469)
++.++... .+++||+++++++|+.|+++.+.+.+|.+......+.|... .......|++|++++|||+|+
T Consensus 226 i~~~~~~~-------~~~~yni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~p~ 298 (314)
T TIGR02197 226 NLWLLENG-------VSGIFNLGTGRARSFNDLADAVFKALGKDEKIEYIPMPEALRGKYQYFTQADITKLRAAGYYGPF 298 (314)
T ss_pred HHHHHhcc-------cCceEEcCCCCCccHHHHHHHHHHHhCCCCcceeccCccccccccccccccchHHHHHhcCCCCc
Confidence 99998762 13799999999999999999999999987655555554431 223457899999999999999
Q ss_pred CcHHHHHHHHHHHHH
Q 012176 426 TDLAAGLRKFVKWYV 440 (469)
Q Consensus 426 ~~l~~~l~~~v~~~~ 440 (469)
++++++|+++++|++
T Consensus 299 ~~l~~~l~~~~~~~~ 313 (314)
T TIGR02197 299 TTLEEGVKDYVQWLL 313 (314)
T ss_pred ccHHHHHHHHHHHHh
Confidence 999999999999985
|
This family consists of examples of ADP-L-glycero-D-mannoheptose-6-epimerase, an enzyme involved in biosynthesis of the inner core of lipopolysaccharide (LPS) for Gram-negative bacteria. This enzyme is homologous to UDP-glucose 4-epimerase (TIGR01179) and belongs to the NAD dependent epimerase/dehydratase family (pfam01370). |
| >TIGR01179 galE UDP-glucose-4-epimerase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-38 Score=313.19 Aligned_cols=313 Identities=26% Similarity=0.392 Sum_probs=245.4
Q ss_pred EEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCccEEEE
Q 012176 120 TVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTHVLH 199 (469)
Q Consensus 120 ~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~d~Vih 199 (469)
+||||||+|+||++++++|+++|++|++++|......... .......+++++.+|+.|.+.++++++..++|+|||
T Consensus 1 kvlV~GatG~iG~~l~~~l~~~g~~V~~~~~~~~~~~~~~----~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~d~vv~ 76 (328)
T TIGR01179 1 KILVTGGAGYIGSHTVRQLLESGHEVVVLDNLSNGSPEAL----KRGERITRVTFVEGDLRDRELLDRLFEEHKIDAVIH 76 (328)
T ss_pred CEEEeCCCCHHHHHHHHHHHhCCCeEEEEeCCCccchhhh----hhhccccceEEEECCCCCHHHHHHHHHhCCCcEEEE
Confidence 5899999999999999999999999999876433211111 111111267889999999999999998767899999
Q ss_pred cccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcCccccCCCCCCCCCCCCCCCCCCChHHHHHHHHHH
Q 012176 200 LAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEE 279 (469)
Q Consensus 200 ~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y~~sK~~~E~ 279 (469)
+||.........++...++.|+.++.+++++|.+.+++ +||++||.++|+.....+++|+++. .|.+.|+.+|.++|.
T Consensus 77 ~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~v~~ss~~~~g~~~~~~~~e~~~~-~~~~~y~~sK~~~e~ 154 (328)
T TIGR01179 77 FAGLIAVGESVQDPLKYYRNNVVNTLNLLEAMQQTGVK-KFIFSSSAAVYGEPSSIPISEDSPL-GPINPYGRSKLMSER 154 (328)
T ss_pred CccccCcchhhcCchhhhhhhHHHHHHHHHHHHhcCCC-EEEEecchhhcCCCCCCCccccCCC-CCCCchHHHHHHHHH
Confidence 99975544445567788999999999999999998876 9999999999987766688888876 688899999999999
Q ss_pred HHHHHHHH-hCCcEEEEeecceecCCCCC---------CChHHHHHHHHH-cCCceEEEee---CCCCcceEecccHHHH
Q 012176 280 IAHTYNHI-YGLALTGLRFFTVYGPWGRP---------DMAYFFFTKDIL-QGKTIDVYKT---QDDREVARDFTYIDDV 345 (469)
Q Consensus 280 ~~~~~~~~-~gi~~~ilRp~~v~Gp~~~~---------~~~~~~~~~~~~-~g~~~~~~~~---~~~~~~~~~~v~v~Dv 345 (469)
+++.++.+ .+++++++||+.||||.... ...+..++.... ...++.+++. .+++++.++|+|++|+
T Consensus 155 ~~~~~~~~~~~~~~~ilR~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~v~~~D~ 234 (328)
T TIGR01179 155 ILRDLSKADPGLSYVILRYFNVAGADPEGTIGEDPPGITHLIPYACQVAVGKRDKLTIFGTDYPTPDGTCVRDYIHVMDL 234 (328)
T ss_pred HHHHHHHhccCCCEEEEecCcccCCCCCCccccCCcccchHHHHHHHHHHhCCCCeEEeCCcccCCCCceEEeeeeHHHH
Confidence 99999877 79999999999999985321 123344444443 3344544421 1356788999999999
Q ss_pred HHHHHHHhccCCCCCCCCCceEEEeCCCCcccHHHHHHHHHHHhCCCccceeecCCCCCCCCcccCChHHHHHhcCCCcc
Q 012176 346 VKGCVGATGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRNGDVPYTHANVSLAYKDFGYKPT 425 (469)
Q Consensus 346 a~~~~~~~~~~~~~~~~~~~~iyni~~~~~vt~~el~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~ 425 (469)
+++++.++..... ...+++||+++++++|+.|+++.+.+.+|++..+...+. ..++......|+++++++|||+|.
T Consensus 235 a~~~~~~~~~~~~---~~~~~~~n~~~~~~~s~~ei~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~lg~~p~ 310 (328)
T TIGR01179 235 ADAHLAALEYLLN---GGESHVYNLGYGQGFSVLEVIEAFKKVSGVDFPVELAPR-RPGDPASLVADASKIRRELGWQPK 310 (328)
T ss_pred HHHHHHHHhhhhc---CCCcceEEcCCCCcccHHHHHHHHHHHhCCCcceEeCCC-CCccccchhcchHHHHHHhCCCCC
Confidence 9999999875321 123589999999999999999999999998876654442 233344456789999999999999
Q ss_pred Cc-HHHHHHHHHHHHHHH
Q 012176 426 TD-LAAGLRKFVKWYVSY 442 (469)
Q Consensus 426 ~~-l~~~l~~~v~~~~~~ 442 (469)
++ ++++|+++++|+.+|
T Consensus 311 ~~~l~~~~~~~~~~~~~~ 328 (328)
T TIGR01179 311 YTDLEIIIKTAWRWESRN 328 (328)
T ss_pred cchHHHHHHHHHHHHhcC
Confidence 98 999999999999764
|
This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately. |
| >PLN00198 anthocyanidin reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-38 Score=316.72 Aligned_cols=306 Identities=16% Similarity=0.190 Sum_probs=226.2
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCcc
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFT 195 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~d 195 (469)
..+|+||||||+||||++|+++|+++|++|++++|....... . .........++++++.+|++|.+.+.++++++ |
T Consensus 7 ~~~~~vlItG~~GfIG~~l~~~L~~~g~~V~~~~r~~~~~~~-~-~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~--d 82 (338)
T PLN00198 7 TGKKTACVIGGTGFLASLLIKLLLQKGYAVNTTVRDPENQKK-I-AHLRALQELGDLKIFGADLTDEESFEAPIAGC--D 82 (338)
T ss_pred CCCCeEEEECCchHHHHHHHHHHHHCCCEEEEEECCCCCHHH-H-HHHHhcCCCCceEEEEcCCCChHHHHHHHhcC--C
Confidence 457899999999999999999999999999999886532110 0 00011111136889999999999999999876 9
Q ss_pred EEEEcccccChhhhccChH-HHHHHHHHHHHHHHHHHHhcC-CCCeEEEEcCccccCCCC----CCCCCCCCC-------
Q 012176 196 HVLHLAAQAGVRYAMQNPQ-SYVASNIAGFVNLLEVCKSVN-PQPSIVWASSSSVYGLNT----QVPFSESHR------- 262 (469)
Q Consensus 196 ~Vih~Aa~~~~~~~~~~~~-~~~~~Nv~~~~~ll~aa~~~~-~~~~~V~~SS~~vyg~~~----~~~~~E~~~------- 262 (469)
+|||+|+... ....++. .++++|+.++.+++++|.+.+ ++ +||++||.++|+... ..+++|+..
T Consensus 83 ~vih~A~~~~--~~~~~~~~~~~~~nv~g~~~ll~a~~~~~~~~-~~v~~SS~~~~g~~~~~~~~~~~~E~~~~~~~~~~ 159 (338)
T PLN00198 83 LVFHVATPVN--FASEDPENDMIKPAIQGVHNVLKACAKAKSVK-RVILTSSAAAVSINKLSGTGLVMNEKNWTDVEFLT 159 (338)
T ss_pred EEEEeCCCCc--cCCCChHHHHHHHHHHHHHHHHHHHHhcCCcc-EEEEeecceeeeccCCCCCCceeccccCCchhhhh
Confidence 9999999632 2223343 567999999999999998864 55 999999999998532 335555421
Q ss_pred -CCCCCChHHHHHHHHHHHHHHHHHHhCCcEEEEeecceecCCCCCC--ChHHHHHHHHHcCCceEEEeeCCCC----cc
Q 012176 263 -TDQPASLYAATKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPD--MAYFFFTKDILQGKTIDVYKTQDDR----EV 335 (469)
Q Consensus 263 -~~~p~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~Gp~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~----~~ 335 (469)
...|.+.|+.+|.++|.+++.+++.+|++++++||++||||+.... ..+ .++..+..++++.+.+. ++ +.
T Consensus 160 ~~~~p~~~Y~~sK~~~E~~~~~~~~~~~~~~~~~R~~~vyGp~~~~~~~~~~-~~~~~~~~~~~~~~~g~--~~~~~~~~ 236 (338)
T PLN00198 160 SEKPPTWGYPASKTLAEKAAWKFAEENNIDLITVIPTLMAGPSLTSDIPSSL-SLAMSLITGNEFLINGL--KGMQMLSG 236 (338)
T ss_pred hcCCccchhHHHHHHHHHHHHHHHHhcCceEEEEeCCceECCCccCCCCCcH-HHHHHHHcCCccccccc--cccccccC
Confidence 1246788999999999999999998999999999999999975432 122 23345667776655521 12 22
Q ss_pred eEecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCCcccHHHHHHHHHHHhCCC-ccceeecCCCCCCCCcccCChH
Q 012176 336 ARDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTK-AKKHVIRMPRNGDVPYTHANVS 414 (469)
Q Consensus 336 ~~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~~vt~~el~~~i~~~~g~~-~~~~~~~~~~~~~~~~~~~d~~ 414 (469)
.++|+||+|+|++++.+++.+. .++.|+ +++..+++.|+++.+.+.++.. .+....+.+ .......|++
T Consensus 237 ~~~~i~V~D~a~a~~~~~~~~~------~~~~~~-~~~~~~s~~el~~~i~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 306 (338)
T PLN00198 237 SISITHVEDVCRAHIFLAEKES------ASGRYI-CCAANTSVPELAKFLIKRYPQYQVPTDFGDFP---SKAKLIISSE 306 (338)
T ss_pred CcceeEHHHHHHHHHHHhhCcC------cCCcEE-EecCCCCHHHHHHHHHHHCCCCCCCccccccC---CCCccccChH
Confidence 4799999999999999987652 124674 4556799999999999988642 222211111 2234568999
Q ss_pred HHHHhcCCCccCcHHHHHHHHHHHHHHH
Q 012176 415 LAYKDFGYKPTTDLAAGLRKFVKWYVSY 442 (469)
Q Consensus 415 ka~~~LG~~p~~~l~~~l~~~v~~~~~~ 442 (469)
|+++ +||+|+++++++|+++++||++.
T Consensus 307 k~~~-~G~~p~~~l~~gi~~~~~~~~~~ 333 (338)
T PLN00198 307 KLIS-EGFSFEYGIEEIYDQTVEYFKAK 333 (338)
T ss_pred HHHh-CCceecCcHHHHHHHHHHHHHHc
Confidence 9987 69999999999999999999754
|
|
| >PLN02650 dihydroflavonol-4-reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-38 Score=318.52 Aligned_cols=310 Identities=18% Similarity=0.229 Sum_probs=224.8
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhc-cCCeEEEEecCCCHHHHHHhhccCCc
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQ-KHQVFIVEGDLNDAPLLTKLFDVVPF 194 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~v~~v~~Dl~d~~~l~~~~~~~~~ 194 (469)
..+|+||||||+||||++|+++|+++|++|++++|........ .. ...... ..+++++.+|+.|.+.++++++++
T Consensus 3 ~~~k~iLVTGatGfIGs~l~~~L~~~G~~V~~~~r~~~~~~~~-~~-~~~~~~~~~~~~~v~~Dl~d~~~~~~~~~~~-- 78 (351)
T PLN02650 3 SQKETVCVTGASGFIGSWLVMRLLERGYTVRATVRDPANVKKV-KH-LLDLPGATTRLTLWKADLAVEGSFDDAIRGC-- 78 (351)
T ss_pred CCCCEEEEeCCcHHHHHHHHHHHHHCCCEEEEEEcCcchhHHH-HH-HHhccCCCCceEEEEecCCChhhHHHHHhCC--
Confidence 3567999999999999999999999999999999865322111 00 000001 125889999999999999999877
Q ss_pred cEEEEcccccChhhhccCh-HHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcCccccCCCC-CCC-CCCCCC--------C
Q 012176 195 THVLHLAAQAGVRYAMQNP-QSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNT-QVP-FSESHR--------T 263 (469)
Q Consensus 195 d~Vih~Aa~~~~~~~~~~~-~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS~~vyg~~~-~~~-~~E~~~--------~ 263 (469)
|+|||+|+.... ...++ ...+++|+.++.+++++|++.+..++|||+||.++|+... ..+ ++|++. .
T Consensus 79 d~ViH~A~~~~~--~~~~~~~~~~~~Nv~gt~~ll~aa~~~~~~~r~v~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~~~ 156 (351)
T PLN02650 79 TGVFHVATPMDF--ESKDPENEVIKPTVNGMLSIMKACAKAKTVRRIVFTSSAGTVNVEEHQKPVYDEDCWSDLDFCRRK 156 (351)
T ss_pred CEEEEeCCCCCC--CCCCchhhhhhHHHHHHHHHHHHHHhcCCceEEEEecchhhcccCCCCCCccCcccCCchhhhhcc
Confidence 999999986432 22233 4788999999999999999887334999999998776432 223 566532 1
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHhCCcEEEEeecceecCCCCCCChHHHHHHHH--HcCCceEEEeeCCCCcceEeccc
Q 012176 264 DQPASLYAATKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTKDI--LQGKTIDVYKTQDDREVARDFTY 341 (469)
Q Consensus 264 ~~p~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~--~~g~~~~~~~~~~~~~~~~~~v~ 341 (469)
..+.+.|+.+|.++|.+++.+++++|++++++||++||||+...... ..++..+ ..+.... + + ..+.++|+|
T Consensus 157 ~~~~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~Gp~~~~~~~-~~~~~~~~~~~~~~~~-~---~-~~~~r~~v~ 230 (351)
T PLN02650 157 KMTGWMYFVSKTLAEKAAWKYAAENGLDFISIIPTLVVGPFISTSMP-PSLITALSLITGNEAH-Y---S-IIKQGQFVH 230 (351)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHcCCeEEEECCCceECCCCCCCCC-ccHHHHHHHhcCCccc-c---C-cCCCcceee
Confidence 12446899999999999999999999999999999999997654221 1222222 3333321 2 1 123479999
Q ss_pred HHHHHHHHHHHhccCCCCCCCCCceEEEeCCCCcccHHHHHHHHHHHhCCCccceeecCCCCCCCCcccCChHHHHHhcC
Q 012176 342 IDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRNGDVPYTHANVSLAYKDFG 421 (469)
Q Consensus 342 v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~~vt~~el~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~d~~ka~~~LG 421 (469)
|+|+|++++.+++++. .+++| ++++..+++.|+++.+.+.++........ .....+......|.+|+ ++||
T Consensus 231 V~Dva~a~~~~l~~~~------~~~~~-i~~~~~~s~~el~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~d~~k~-~~lG 301 (351)
T PLN02650 231 LDDLCNAHIFLFEHPA------AEGRY-ICSSHDATIHDLAKMLREKYPEYNIPARF-PGIDEDLKSVEFSSKKL-TDLG 301 (351)
T ss_pred HHHHHHHHHHHhcCcC------cCceE-EecCCCcCHHHHHHHHHHhCcccCCCCCC-CCcCcccccccCChHHH-HHhC
Confidence 9999999999998652 12578 45567799999999999988732111111 11223445566788887 5799
Q ss_pred CCccCcHHHHHHHHHHHHHHHcCCC
Q 012176 422 YKPTTDLAAGLRKFVKWYVSYYGIQ 446 (469)
Q Consensus 422 ~~p~~~l~~~l~~~v~~~~~~~~~~ 446 (469)
|+|+++|+++|+++++||++....+
T Consensus 302 ~~p~~~l~egl~~~i~~~~~~~~~~ 326 (351)
T PLN02650 302 FTFKYSLEDMFDGAIETCREKGLIP 326 (351)
T ss_pred CCCCCCHHHHHHHHHHHHHHcCCCC
Confidence 9999999999999999998766543
|
|
| >PLN02986 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-38 Score=313.03 Aligned_cols=301 Identities=18% Similarity=0.224 Sum_probs=226.1
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCccE
Q 012176 117 NGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTH 196 (469)
Q Consensus 117 ~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~d~ 196 (469)
.+++||||||+||||++++++|+++|++|+++.|+...... ............+++++.+|++|.+.+.++++++ |+
T Consensus 4 ~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~-~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~--d~ 80 (322)
T PLN02986 4 GGKLVCVTGASGYIASWIVKLLLLRGYTVKATVRDLTDRKK-TEHLLALDGAKERLKLFKADLLEESSFEQAIEGC--DA 80 (322)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCCcchHH-HHHHHhccCCCCceEEEecCCCCcchHHHHHhCC--CE
Confidence 56899999999999999999999999999999986543211 1111100001247899999999999999999987 99
Q ss_pred EEEcccccChhhhccCh-HHHHHHHHHHHHHHHHHHHhc-CCCCeEEEEcCcccc--CCC---CCCCCCCCCCCC-----
Q 012176 197 VLHLAAQAGVRYAMQNP-QSYVASNIAGFVNLLEVCKSV-NPQPSIVWASSSSVY--GLN---TQVPFSESHRTD----- 264 (469)
Q Consensus 197 Vih~Aa~~~~~~~~~~~-~~~~~~Nv~~~~~ll~aa~~~-~~~~~~V~~SS~~vy--g~~---~~~~~~E~~~~~----- 264 (469)
|||+|+.... ...++ ...++.|+.|+.+++++|++. +++ +||++||.++| +.. .+.+++|+++..
T Consensus 81 vih~A~~~~~--~~~~~~~~~~~~nv~gt~~ll~~~~~~~~v~-rvV~~SS~~~~~~~~~~~~~~~~~~E~~~~~p~~~~ 157 (322)
T PLN02986 81 VFHTASPVFF--TVKDPQTELIDPALKGTINVLNTCKETPSVK-RVILTSSTAAVLFRQPPIEANDVVDETFFSDPSLCR 157 (322)
T ss_pred EEEeCCCcCC--CCCCchhhhhHHHHHHHHHHHHHHHhcCCcc-EEEEecchhheecCCccCCCCCCcCcccCCChHHhh
Confidence 9999997432 22333 357899999999999999986 565 99999998764 322 233567766431
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHhCCcEEEEeecceecCCCCCC-ChHHHHHHHHHcCCceEEEeeCCCCcceEecccHH
Q 012176 265 QPASLYAATKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPD-MAYFFFTKDILQGKTIDVYKTQDDREVARDFTYID 343 (469)
Q Consensus 265 ~p~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~Gp~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~ 343 (469)
.+.+.|+.+|..+|.+++.+.+++|++++++||++||||+..+. .....++..+..|.++ + +.+.++|+||+
T Consensus 158 ~~~~~Y~~sK~~aE~~~~~~~~~~~~~~~~lrp~~v~Gp~~~~~~~~~~~~~~~~~~g~~~--~-----~~~~~~~v~v~ 230 (322)
T PLN02986 158 ETKNWYPLSKILAENAAWEFAKDNGIDMVVLNPGFICGPLLQPTLNFSVELIVDFINGKNL--F-----NNRFYRFVDVR 230 (322)
T ss_pred ccccchHHHHHHHHHHHHHHHHHhCCeEEEEcccceeCCCCCCCCCccHHHHHHHHcCCCC--C-----CCcCcceeEHH
Confidence 23578999999999999999988899999999999999976543 2223556666667653 3 35678999999
Q ss_pred HHHHHHHHHhccCCCCCCCCCceEEEeCCCCcccHHHHHHHHHHHhCCCccceeecCCCCCCCCcc--cCChHHHHHhcC
Q 012176 344 DVVKGCVGATGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRNGDVPYT--HANVSLAYKDFG 421 (469)
Q Consensus 344 Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~~vt~~el~~~i~~~~g~~~~~~~~~~~~~~~~~~~--~~d~~ka~~~LG 421 (469)
|+|++++.+++++. . +++||++ ++.+|+.|+++.+.+.++. ..+... ...++.... .+|.+|++ +||
T Consensus 231 Dva~a~~~al~~~~-----~-~~~yni~-~~~~s~~e~~~~i~~~~~~-~~~~~~--~~~~~~~~~~~~~d~~~~~-~lg 299 (322)
T PLN02986 231 DVALAHIKALETPS-----A-NGRYIID-GPIMSVNDIIDILRELFPD-LCIADT--NEESEMNEMICKVCVEKVK-NLG 299 (322)
T ss_pred HHHHHHHHHhcCcc-----c-CCcEEEe-cCCCCHHHHHHHHHHHCCC-CCCCCC--CccccccccCCccCHHHHH-HcC
Confidence 99999999998762 1 2589995 4679999999999999973 111111 112222222 48889885 599
Q ss_pred CCccCcHHHHHHHHHHHHHHH
Q 012176 422 YKPTTDLAAGLRKFVKWYVSY 442 (469)
Q Consensus 422 ~~p~~~l~~~l~~~v~~~~~~ 442 (469)
|+|+ +++|+|+++++||++.
T Consensus 300 ~~~~-~l~e~~~~~~~~~~~~ 319 (322)
T PLN02986 300 VEFT-PMKSSLRDTILSLKEK 319 (322)
T ss_pred Cccc-CHHHHHHHHHHHHHHc
Confidence 9997 8999999999999763
|
|
| >TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-38 Score=306.32 Aligned_cols=276 Identities=21% Similarity=0.231 Sum_probs=229.4
Q ss_pred EEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCccEEEE
Q 012176 120 TVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTHVLH 199 (469)
Q Consensus 120 ~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~d~Vih 199 (469)
+||||||+||||++++++|+++|++|++++|. .+|+.|.+.+.+++++.++|+|||
T Consensus 1 kilv~G~tG~iG~~l~~~l~~~g~~v~~~~r~------------------------~~d~~~~~~~~~~~~~~~~d~vi~ 56 (287)
T TIGR01214 1 RILITGANGQLGRELVQQLSPEGRVVVALTSS------------------------QLDLTDPEALERLLRAIRPDAVVN 56 (287)
T ss_pred CEEEEcCCCHHHHHHHHHHHhcCCEEEEeCCc------------------------ccCCCCHHHHHHHHHhCCCCEEEE
Confidence 48999999999999999999999999999882 479999999999999988999999
Q ss_pred cccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcCccccCCCCCCCCCCCCCCCCCCChHHHHHHHHHH
Q 012176 200 LAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEE 279 (469)
Q Consensus 200 ~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y~~sK~~~E~ 279 (469)
+|+.........++...+++|+.++.+++++|++.+. +||++||.++|+.....+++|+++. .|.+.|+.+|..+|.
T Consensus 57 ~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~v~~Ss~~vy~~~~~~~~~E~~~~-~~~~~Y~~~K~~~E~ 133 (287)
T TIGR01214 57 TAAYTDVDGAESDPEKAFAVNALAPQNLARAAARHGA--RLVHISTDYVFDGEGKRPYREDDAT-NPLNVYGQSKLAGEQ 133 (287)
T ss_pred CCccccccccccCHHHHHHHHHHHHHHHHHHHHHcCC--eEEEEeeeeeecCCCCCCCCCCCCC-CCcchhhHHHHHHHH
Confidence 9997654444456778899999999999999998874 8999999999987666789998876 678899999999999
Q ss_pred HHHHHHHHhCCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceEecccHHHHHHHHHHHhccCCCC
Q 012176 280 IAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGATGSGGKK 359 (469)
Q Consensus 280 ~~~~~~~~~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~~~~~~~~~~~~~ 359 (469)
+++.+ +++++++||+.||||+.. ..++..+++.+..++++.+. +++.++++|++|+|++++.++..+
T Consensus 134 ~~~~~----~~~~~ilR~~~v~G~~~~-~~~~~~~~~~~~~~~~~~~~-----~~~~~~~v~v~Dva~a~~~~~~~~--- 200 (287)
T TIGR01214 134 AIRAA----GPNALIVRTSWLYGGGGG-RNFVRTMLRLAGRGEELRVV-----DDQIGSPTYAKDLARVIAALLQRL--- 200 (287)
T ss_pred HHHHh----CCCeEEEEeeecccCCCC-CCHHHHHHHHhhcCCCceEe-----cCCCcCCcCHHHHHHHHHHHHhhc---
Confidence 98874 789999999999999743 23456677878888877776 456789999999999999999765
Q ss_pred CCCCCceEEEeCCCCcccHHHHHHHHHHHhCCCccceee------cC---CC-CCCCCcccCChHHHHHhcCCCccCcHH
Q 012176 360 RGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVI------RM---PR-NGDVPYTHANVSLAYKDFGYKPTTDLA 429 (469)
Q Consensus 360 ~~~~~~~iyni~~~~~vt~~el~~~i~~~~g~~~~~~~~------~~---~~-~~~~~~~~~d~~ka~~~LG~~p~~~l~ 429 (469)
...+++||+++++.+++.|+++.+.+.+|.+...... .. +. .....+..+|++|++++|||++ ++++
T Consensus 201 --~~~~~~~ni~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~lg~~~-~~~~ 277 (287)
T TIGR01214 201 --ARARGVYHLANSGQCSWYEFAQAIFEEAGADGLLLHPQEVKPISSKEYPRPARRPAYSVLDNTKLVKTLGTPL-PHWR 277 (287)
T ss_pred --cCCCCeEEEECCCCcCHHHHHHHHHHHhCcccccccCceeEeecHHHcCCCCCCCCccccchHHHHHHcCCCC-ccHH
Confidence 2335899999999999999999999999987532111 00 11 1223456799999999999954 5999
Q ss_pred HHHHHHHHH
Q 012176 430 AGLRKFVKW 438 (469)
Q Consensus 430 ~~l~~~v~~ 438 (469)
++|+++++.
T Consensus 278 ~~l~~~~~~ 286 (287)
T TIGR01214 278 EALRAYLQE 286 (287)
T ss_pred HHHHHHHhh
Confidence 999988763
|
This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc. |
| >PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-38 Score=309.79 Aligned_cols=280 Identities=25% Similarity=0.366 Sum_probs=218.8
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCccEEE
Q 012176 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTHVL 198 (469)
Q Consensus 119 ~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~d~Vi 198 (469)
|+||||||+|+||++|.+.|.++|++|+++.|. ..|+.|.+.+.++++..+||+||
T Consensus 1 MriLI~GasG~lG~~l~~~l~~~~~~v~~~~r~------------------------~~dl~d~~~~~~~~~~~~pd~Vi 56 (286)
T PF04321_consen 1 MRILITGASGFLGSALARALKERGYEVIATSRS------------------------DLDLTDPEAVAKLLEAFKPDVVI 56 (286)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTTSEEEEEESTT------------------------CS-TTSHHHHHHHHHHH--SEEE
T ss_pred CEEEEECCCCHHHHHHHHHHhhCCCEEEEeCch------------------------hcCCCCHHHHHHHHHHhCCCeEe
Confidence 799999999999999999999999999999872 57999999999999998999999
Q ss_pred EcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcCccccCCCCCCCCCCCCCCCCCCChHHHHHHHHH
Q 012176 199 HLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGE 278 (469)
Q Consensus 199 h~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y~~sK~~~E 278 (469)
||||...++.++.+++..+++|+.++.+|+++|.+.|. ++||+||..||++..+.|++|++++ .|.+.||.+|+++|
T Consensus 57 n~aa~~~~~~ce~~p~~a~~iN~~~~~~la~~~~~~~~--~li~~STd~VFdG~~~~~y~E~d~~-~P~~~YG~~K~~~E 133 (286)
T PF04321_consen 57 NCAAYTNVDACEKNPEEAYAINVDATKNLAEACKERGA--RLIHISTDYVFDGDKGGPYTEDDPP-NPLNVYGRSKLEGE 133 (286)
T ss_dssp E------HHHHHHSHHHHHHHHTHHHHHHHHHHHHCT---EEEEEEEGGGS-SSTSSSB-TTS-----SSHHHHHHHHHH
T ss_pred ccceeecHHhhhhChhhhHHHhhHHHHHHHHHHHHcCC--cEEEeeccEEEcCCcccccccCCCC-CCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999997 7999999999988888899999998 89999999999999
Q ss_pred HHHHHHHHHhCCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceEecccHHHHHHHHHHHhccCCC
Q 012176 279 EIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGATGSGGK 358 (469)
Q Consensus 279 ~~~~~~~~~~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~~~~~~~~~~~~ 358 (469)
+.+++... ...|+|++.+||+ ....++.++++.+..++.+.++ .++.++++|++|+|++++.++++...
T Consensus 134 ~~v~~~~~----~~~IlR~~~~~g~--~~~~~~~~~~~~~~~~~~i~~~-----~d~~~~p~~~~dlA~~i~~l~~~~~~ 202 (286)
T PF04321_consen 134 QAVRAACP----NALILRTSWVYGP--SGRNFLRWLLRRLRQGEPIKLF-----DDQYRSPTYVDDLARVILELIEKNLS 202 (286)
T ss_dssp HHHHHH-S----SEEEEEE-SEESS--SSSSHHHHHHHHHHCTSEEEEE-----SSCEE--EEHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcC----CEEEEecceeccc--CCCchhhhHHHHHhcCCeeEee-----CCceeCCEEHHHHHHHHHHHHHhccc
Confidence 99998543 7899999999999 3335788899999999999998 78899999999999999999887521
Q ss_pred CCCCCCceEEEeCCCCcccHHHHHHHHHHHhCCCc-cceeecCCC----CCCCCcccCChHHHHHhcCCCccCcHHHHHH
Q 012176 359 KRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKA-KKHVIRMPR----NGDVPYTHANVSLAYKDFGYKPTTDLAAGLR 433 (469)
Q Consensus 359 ~~~~~~~~iyni~~~~~vt~~el~~~i~~~~g~~~-~~~~~~~~~----~~~~~~~~~d~~ka~~~LG~~p~~~l~~~l~ 433 (469)
+....++||+++++.+|+.|+++.+.+.+|.+. .+...+... ...+.+..+|++|++..||+++. +|+++|+
T Consensus 203 --~~~~~Giyh~~~~~~~S~~e~~~~i~~~~~~~~~~i~~~~~~~~~~~~~rp~~~~L~~~kl~~~~g~~~~-~~~~~l~ 279 (286)
T PF04321_consen 203 --GASPWGIYHLSGPERVSRYEFAEAIAKILGLDPELIKPVSSSEFPRAAPRPRNTSLDCRKLKNLLGIKPP-PWREGLE 279 (286)
T ss_dssp ---GGG-EEEE---BS-EEHHHHHHHHHHHHTHCTTEEEEESSTTSTTSSGS-SBE-B--HHHHHCTTS----BHHHHHH
T ss_pred --ccccceeEEEecCcccCHHHHHHHHHHHhCCCCceEEecccccCCCCCCCCCcccccHHHHHHccCCCCc-CHHHHHH
Confidence 123459999999999999999999999999887 333332221 12455778999999999999998 8999999
Q ss_pred HHHHHH
Q 012176 434 KFVKWY 439 (469)
Q Consensus 434 ~~v~~~ 439 (469)
++++.|
T Consensus 280 ~~~~~~ 285 (286)
T PF04321_consen 280 ELVKQY 285 (286)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 999876
|
1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. |
| >TIGR03466 HpnA hopanoid-associated sugar epimerase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-36 Score=303.62 Aligned_cols=295 Identities=26% Similarity=0.322 Sum_probs=232.4
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCccEEE
Q 012176 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTHVL 198 (469)
Q Consensus 119 ~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~d~Vi 198 (469)
|+|+||||+||||+++++.|+++|++|++++|...... .....+++++.+|+.|.+++.++++++ |+||
T Consensus 1 ~~vlItG~~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~---------~~~~~~~~~~~~D~~~~~~l~~~~~~~--d~vi 69 (328)
T TIGR03466 1 MKVLVTGATGFVGSAVVRLLLEQGEEVRVLVRPTSDRR---------NLEGLDVEIVEGDLRDPASLRKAVAGC--RALF 69 (328)
T ss_pred CeEEEECCccchhHHHHHHHHHCCCEEEEEEecCcccc---------ccccCCceEEEeeCCCHHHHHHHHhCC--CEEE
Confidence 57999999999999999999999999999999654211 112337899999999999999999987 9999
Q ss_pred EcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcCccccCC-CCCCCCCCCCCCCCC---CChHHHHH
Q 012176 199 HLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGL-NTQVPFSESHRTDQP---ASLYAATK 274 (469)
Q Consensus 199 h~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS~~vyg~-~~~~~~~E~~~~~~p---~~~Y~~sK 274 (469)
|+|+... ....+++..++.|+.++.+++++|++.+++ +||++||.++|+. ..+.+++|+.+. .+ .+.|+.+|
T Consensus 70 ~~a~~~~--~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~v~~SS~~~~~~~~~~~~~~e~~~~-~~~~~~~~Y~~sK 145 (328)
T TIGR03466 70 HVAADYR--LWAPDPEEMYAANVEGTRNLLRAALEAGVE-RVVYTSSVATLGVRGDGTPADETTPS-SLDDMIGHYKRSK 145 (328)
T ss_pred Eeceecc--cCCCCHHHHHHHHHHHHHHHHHHHHHhCCC-eEEEEechhhcCcCCCCCCcCccCCC-CcccccChHHHHH
Confidence 9998632 223567788999999999999999998876 9999999999985 344578887665 33 46899999
Q ss_pred HHHHHHHHHHHHHhCCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceEecccHHHHHHHHHHHhc
Q 012176 275 KAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGATG 354 (469)
Q Consensus 275 ~~~E~~~~~~~~~~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~~~~~~~~ 354 (469)
.++|++++.++.+++++++++||+.+|||+.........++.....++. +.. .+...+|+|++|+|++++.+++
T Consensus 146 ~~~e~~~~~~~~~~~~~~~ilR~~~~~G~~~~~~~~~~~~~~~~~~~~~-~~~-----~~~~~~~i~v~D~a~a~~~~~~ 219 (328)
T TIGR03466 146 FLAEQAALEMAAEKGLPVVIVNPSTPIGPRDIKPTPTGRIIVDFLNGKM-PAY-----VDTGLNLVHVDDVAEGHLLALE 219 (328)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCccCCCCCCCCCcHHHHHHHHHcCCC-cee-----eCCCcceEEHHHHHHHHHHHHh
Confidence 9999999999988899999999999999976533333334444444432 222 1233689999999999999987
Q ss_pred cCCCCCCCCCceEEEeCCCCcccHHHHHHHHHHHhCCCccceeecCCC--------------CCCC------------Cc
Q 012176 355 SGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPR--------------NGDV------------PY 408 (469)
Q Consensus 355 ~~~~~~~~~~~~iyni~~~~~vt~~el~~~i~~~~g~~~~~~~~~~~~--------------~~~~------------~~ 408 (469)
++. .++.|+++ ++++++.|+++.+.+.+|++......|.+. .+.. ..
T Consensus 220 ~~~------~~~~~~~~-~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (328)
T TIGR03466 220 RGR------IGERYILG-GENLTLKQILDKLAEITGRPAPRVKLPRWLLLPVAWGAEALARLTGKEPRVTVDGVRMAKKK 292 (328)
T ss_pred CCC------CCceEEec-CCCcCHHHHHHHHHHHhCCCCCCCcCCHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHhcc
Confidence 642 34788886 578999999999999999875444333110 0111 24
Q ss_pred ccCChHHHHHhcCCCccCcHHHHHHHHHHHHHHH
Q 012176 409 THANVSLAYKDFGYKPTTDLAAGLRKFVKWYVSY 442 (469)
Q Consensus 409 ~~~d~~ka~~~LG~~p~~~l~~~l~~~v~~~~~~ 442 (469)
..+|++|++++|||+|+ +++++|.++++||+++
T Consensus 293 ~~~d~~k~~~~lg~~p~-~~~~~i~~~~~~~~~~ 325 (328)
T TIGR03466 293 MFFSSAKAVRELGYRQR-PAREALRDAVEWFRAN 325 (328)
T ss_pred CCCChHHHHHHcCCCCc-CHHHHHHHHHHHHHHh
Confidence 56899999999999996 9999999999999764
|
The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene. |
| >KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-36 Score=291.10 Aligned_cols=302 Identities=22% Similarity=0.230 Sum_probs=230.5
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHh-hccCCeEEEEecCCCHHHHHHhhccCCcc
Q 012176 117 NGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKL-LQKHQVFIVEGDLNDAPLLTKLFDVVPFT 195 (469)
Q Consensus 117 ~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~v~~v~~Dl~d~~~l~~~~~~~~~d 195 (469)
.+++|+||||+||||+||++.|+++||.|+++.|+.+.. ........+ ....+.+.+.+|+.|++++.++++++ |
T Consensus 5 ~~~~VcVTGAsGfIgswivk~LL~rGY~V~gtVR~~~~~--k~~~~L~~l~~a~~~l~l~~aDL~d~~sf~~ai~gc--d 80 (327)
T KOG1502|consen 5 EGKKVCVTGASGFIGSWIVKLLLSRGYTVRGTVRDPEDE--KKTEHLRKLEGAKERLKLFKADLLDEGSFDKAIDGC--D 80 (327)
T ss_pred CCcEEEEeCCchHHHHHHHHHHHhCCCEEEEEEcCcchh--hhHHHHHhcccCcccceEEeccccccchHHHHHhCC--C
Confidence 678999999999999999999999999999999977631 111111111 12346999999999999999999999 9
Q ss_pred EEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcC-CCCeEEEEcCccccCC-----CCCCCCCCCCCCC-----
Q 012176 196 HVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVN-PQPSIVWASSSSVYGL-----NTQVPFSESHRTD----- 264 (469)
Q Consensus 196 ~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~-~~~~~V~~SS~~vyg~-----~~~~~~~E~~~~~----- 264 (469)
+|||.|..+.+.... ...+..+.++.|+.|++++|++.. ++ |||++||.++-.. .+...++|+.+.+
T Consensus 81 gVfH~Asp~~~~~~~-~e~~li~pav~Gt~nVL~ac~~~~sVk-rvV~TSS~aAv~~~~~~~~~~~vvdE~~wsd~~~~~ 158 (327)
T KOG1502|consen 81 GVFHTASPVDFDLED-PEKELIDPAVKGTKNVLEACKKTKSVK-RVVYTSSTAAVRYNGPNIGENSVVDEESWSDLDFCR 158 (327)
T ss_pred EEEEeCccCCCCCCC-cHHhhhhHHHHHHHHHHHHHhccCCcc-eEEEeccHHHhccCCcCCCCCcccccccCCcHHHHH
Confidence 999999986654222 344799999999999999999998 55 9999999655432 2344678877642
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHhCCcEEEEeecceecCCCCCCChH-HHHHHHHHcCCceEEEeeCCCCcceEecccHH
Q 012176 265 QPASLYAATKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAY-FFFTKDILQGKTIDVYKTQDDREVARDFTYID 343 (469)
Q Consensus 265 ~p~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~Gp~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~ 343 (469)
.....|..+|..+|+.+.+++++.|++.+.+.|+.|+||...+.... ...+..+++|..-.. .+....|+||+
T Consensus 159 ~~~~~Y~~sK~lAEkaAw~fa~e~~~~lv~inP~lV~GP~l~~~l~~s~~~~l~~i~G~~~~~------~n~~~~~VdVr 232 (327)
T KOG1502|consen 159 CKKLWYALSKTLAEKAAWEFAKENGLDLVTINPGLVFGPGLQPSLNSSLNALLKLIKGLAETY------PNFWLAFVDVR 232 (327)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhCCccEEEecCCceECCCcccccchhHHHHHHHHhcccccC------CCCceeeEeHH
Confidence 22367999999999999999999999999999999999987764222 344555666643322 35556699999
Q ss_pred HHHHHHHHHhccCCCCCCCCCceEEEeCCCCcccHHHHHHHHHHHhCCCccceeecCCCC----CCCCcccCChHHHHHh
Q 012176 344 DVVKGCVGATGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRN----GDVPYTHANVSLAYKD 419 (469)
Q Consensus 344 Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~~vt~~el~~~i~~~~g~~~~~~~~~~~~~----~~~~~~~~d~~ka~~~ 419 (469)
|||++++.+++++.. . +.|.|.+.. +++.|+++++.+.+.... +|.... .......++.+|++..
T Consensus 233 DVA~AHv~a~E~~~a-----~-GRyic~~~~-~~~~ei~~~l~~~~P~~~----ip~~~~~~~~~~~~~~~~~~~k~k~l 301 (327)
T KOG1502|consen 233 DVALAHVLALEKPSA-----K-GRYICVGEV-VSIKEIADILRELFPDYP----IPKKNAEEHEGFLTSFKVSSEKLKSL 301 (327)
T ss_pred HHHHHHHHHHcCccc-----C-ceEEEecCc-ccHHHHHHHHHHhCCCCC----CCCCCCccccccccccccccHHHHhc
Confidence 999999999999842 2 667666655 669999999999998655 222211 1122235788998875
Q ss_pred cCCCccCcHHHHHHHHHHHHHHH
Q 012176 420 FGYKPTTDLAAGLRKFVKWYVSY 442 (469)
Q Consensus 420 LG~~p~~~l~~~l~~~v~~~~~~ 442 (469)
.||+.. +++|.+.++++++++.
T Consensus 302 g~~~~~-~l~e~~~dt~~sl~~~ 323 (327)
T KOG1502|consen 302 GGFKFR-PLEETLSDTVESLREK 323 (327)
T ss_pred ccceec-ChHHHHHHHHHHHHHh
Confidence 558766 9999999999998764
|
|
| >COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-36 Score=282.38 Aligned_cols=275 Identities=21% Similarity=0.245 Sum_probs=241.8
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCccEEE
Q 012176 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTHVL 198 (469)
Q Consensus 119 ~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~d~Vi 198 (469)
|+|||||++|++|..|++.|. .+++|+.++|.+ .|++|++.+.++++..+||+||
T Consensus 1 M~iLi~G~~GqLG~~L~~~l~-~~~~v~a~~~~~------------------------~Ditd~~~v~~~i~~~~PDvVI 55 (281)
T COG1091 1 MKILITGANGQLGTELRRALP-GEFEVIATDRAE------------------------LDITDPDAVLEVIRETRPDVVI 55 (281)
T ss_pred CcEEEEcCCChHHHHHHHHhC-CCceEEeccCcc------------------------ccccChHHHHHHHHhhCCCEEE
Confidence 459999999999999999998 778999998722 7999999999999999999999
Q ss_pred EcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcCccccCCCCCCCCCCCCCCCCCCChHHHHHHHHH
Q 012176 199 HLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGE 278 (469)
Q Consensus 199 h~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y~~sK~~~E 278 (469)
|+|+...++.++.+++..+.+|..|+.++.++|++.|. .+||+||-.||.+..+.|+.|+|++ .|.+.||+||+++|
T Consensus 56 n~AAyt~vD~aE~~~e~A~~vNa~~~~~lA~aa~~~ga--~lVhiSTDyVFDG~~~~~Y~E~D~~-~P~nvYG~sKl~GE 132 (281)
T COG1091 56 NAAAYTAVDKAESEPELAFAVNATGAENLARAAAEVGA--RLVHISTDYVFDGEKGGPYKETDTP-NPLNVYGRSKLAGE 132 (281)
T ss_pred ECccccccccccCCHHHHHHhHHHHHHHHHHHHHHhCC--eEEEeecceEecCCCCCCCCCCCCC-CChhhhhHHHHHHH
Confidence 99999999999999999999999999999999999998 6999999999998888899999999 89999999999999
Q ss_pred HHHHHHHHHhCCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceEecccHHHHHHHHHHHhccCCC
Q 012176 279 EIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGATGSGGK 358 (469)
Q Consensus 279 ~~~~~~~~~~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~~~~~~~~~~~~ 358 (469)
..+++++ -+.+|+|.++|||..+ ..++..+++...+|+++.+. .+|..+++++.|+|+++..++....
T Consensus 133 ~~v~~~~----~~~~I~Rtswv~g~~g--~nFv~tml~la~~~~~l~vv-----~Dq~gsPt~~~dlA~~i~~ll~~~~- 200 (281)
T COG1091 133 EAVRAAG----PRHLILRTSWVYGEYG--NNFVKTMLRLAKEGKELKVV-----DDQYGSPTYTEDLADAILELLEKEK- 200 (281)
T ss_pred HHHHHhC----CCEEEEEeeeeecCCC--CCHHHHHHHHhhcCCceEEE-----CCeeeCCccHHHHHHHHHHHHhccc-
Confidence 9999964 4679999999999866 44778889999999999999 8999999999999999999987752
Q ss_pred CCCCCCceEEEeCCCCcccHHHHHHHHHHHhCCCccce-eecC---CCC-CCCCcccCChHHHHHhcCCCccCcHHHHHH
Q 012176 359 KRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKH-VIRM---PRN-GDVPYTHANVSLAYKDFGYKPTTDLAAGLR 433 (469)
Q Consensus 359 ~~~~~~~~iyni~~~~~vt~~el~~~i~~~~g~~~~~~-~~~~---~~~-~~~~~~~~d~~ka~~~LG~~p~~~l~~~l~ 433 (469)
.+++||+++...+||.|+++.+.+.++.+.... .... |.. ..+.+..+|+.|+.+.+|+.|. .|+++++
T Consensus 201 -----~~~~yH~~~~g~~Swydfa~~I~~~~~~~~~v~~~~~~~~~~~~a~RP~~S~L~~~k~~~~~g~~~~-~w~~~l~ 274 (281)
T COG1091 201 -----EGGVYHLVNSGECSWYEFAKAIFEEAGVDGEVIEPIASAEYPTPAKRPANSSLDTKKLEKAFGLSLP-EWREALK 274 (281)
T ss_pred -----cCcEEEEeCCCcccHHHHHHHHHHHhCCCccccccccccccCccCCCCcccccchHHHHHHhCCCCc-cHHHHHH
Confidence 225999999888999999999999998665332 1111 222 2445677999999999999888 8999999
Q ss_pred HHHHHH
Q 012176 434 KFVKWY 439 (469)
Q Consensus 434 ~~v~~~ 439 (469)
++++.+
T Consensus 275 ~~~~~~ 280 (281)
T COG1091 275 ALLDEL 280 (281)
T ss_pred HHHhhc
Confidence 998753
|
|
| >PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-36 Score=292.30 Aligned_cols=259 Identities=26% Similarity=0.272 Sum_probs=204.5
Q ss_pred EEEcCCChhHHHHHHHHHHCC--CcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCccEEEE
Q 012176 122 LVTGAAGFVGSHCSLALKKRG--DGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTHVLH 199 (469)
Q Consensus 122 lVtGatG~IG~~l~~~L~~~G--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~d~Vih 199 (469)
|||||+||||++|+++|+++| ++|+++++...... ...........++++|++|.+++.++++++ |+|||
T Consensus 1 LVTGgsGflG~~iv~~Ll~~g~~~~Vr~~d~~~~~~~------~~~~~~~~~~~~~~~Di~d~~~l~~a~~g~--d~V~H 72 (280)
T PF01073_consen 1 LVTGGSGFLGSHIVRQLLERGYIYEVRVLDRSPPPKF------LKDLQKSGVKEYIQGDITDPESLEEALEGV--DVVFH 72 (280)
T ss_pred CEEcCCcHHHHHHHHHHHHCCCceEEEEccccccccc------chhhhcccceeEEEeccccHHHHHHHhcCC--ceEEE
Confidence 699999999999999999999 79999998554211 011112223449999999999999999999 99999
Q ss_pred cccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcCccccCCCC-CCCC---CCCCCC-CCCCChHHHHH
Q 012176 200 LAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNT-QVPF---SESHRT-DQPASLYAATK 274 (469)
Q Consensus 200 ~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS~~vyg~~~-~~~~---~E~~~~-~~p~~~Y~~sK 274 (469)
+|+..... .....+.++++|+.||++|+++|++.+++ +|||+||.+|++.+. ..++ +|+.+. ..+...|+.||
T Consensus 73 ~Aa~~~~~-~~~~~~~~~~vNV~GT~nvl~aa~~~~Vk-rlVytSS~~vv~~~~~~~~~~~~dE~~~~~~~~~~~Y~~SK 150 (280)
T PF01073_consen 73 TAAPVPPW-GDYPPEEYYKVNVDGTRNVLEAARKAGVK-RLVYTSSISVVFDNYKGDPIINGDEDTPYPSSPLDPYAESK 150 (280)
T ss_pred eCcccccc-CcccHHHHHHHHHHHHHHHHHHHHHcCCC-EEEEEcCcceeEeccCCCCcccCCcCCcccccccCchHHHH
Confidence 99975432 23566789999999999999999999997 999999999987622 2233 344332 13667899999
Q ss_pred HHHHHHHHHHHH---H--hCCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceEecccHHHHHHHH
Q 012176 275 KAGEEIAHTYNH---I--YGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGC 349 (469)
Q Consensus 275 ~~~E~~~~~~~~---~--~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~~~ 349 (469)
..+|+++.+... + ..+..++|||..||||++.. ..+.+...+..|...... ++++...+++||+|||.++
T Consensus 151 ~~AE~~V~~a~~~~~~~g~~l~t~~lRP~~IyGp~d~~--~~~~~~~~~~~g~~~~~~---g~~~~~~~~vyV~NvA~ah 225 (280)
T PF01073_consen 151 ALAEKAVLEANGSELKNGGRLRTCALRPAGIYGPGDQR--LVPRLVKMVRSGLFLFQI---GDGNNLFDFVYVENVAHAH 225 (280)
T ss_pred HHHHHHHHhhcccccccccceeEEEEeccEEeCccccc--ccchhhHHHHhcccceee---cCCCceECcEeHHHHHHHH
Confidence 999999999876 1 25999999999999997654 334556666667566555 6678899999999999999
Q ss_pred HHHhccCCCC--CCCCCceEEEeCCCCccc-HHHHHHHHHHHhCCCccc
Q 012176 350 VGATGSGGKK--RGPAQLRVYNLGNTSPVP-VGRLVSILENLLNTKAKK 395 (469)
Q Consensus 350 ~~~~~~~~~~--~~~~~~~iyni~~~~~vt-~~el~~~i~~~~g~~~~~ 395 (469)
+.+.+.-... .....|+.|+|++++|+. +.||...+.+.+|.+.+.
T Consensus 226 vlA~~~L~~~~~~~~~~G~~y~itd~~p~~~~~~f~~~~~~~~G~~~~~ 274 (280)
T PF01073_consen 226 VLAAQALLEPGKPERVAGQAYFITDGEPVPSFWDFMRPLWEALGYPPPK 274 (280)
T ss_pred HHHHHHhccccccccCCCcEEEEECCCccCcHHHHHHHHHHHCCCCCCc
Confidence 9986532211 235678999999999999 999999999999988765
|
3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process |
| >COG1089 Gmd GDP-D-mannose dehydratase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=273.64 Aligned_cols=317 Identities=21% Similarity=0.261 Sum_probs=268.9
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHH-HHHHhhccCCeEEEEecCCCHHHHHHhhccCCccE
Q 012176 118 GMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKR-ARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTH 196 (469)
Q Consensus 118 ~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~-~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~d~ 196 (469)
+|+.||||-||+-|.+|++.|++.|++|+++.|..+..+..... .........+++++.||++|...+.++++.++||.
T Consensus 2 ~K~ALITGITGQDGsYLa~lLLekGY~VhGi~Rrss~~n~~ri~L~~~~~~~~~~l~l~~gDLtD~~~l~r~l~~v~PdE 81 (345)
T COG1089 2 GKVALITGITGQDGSYLAELLLEKGYEVHGIKRRSSSFNTPRIHLYEDPHLNDPRLHLHYGDLTDSSNLLRILEEVQPDE 81 (345)
T ss_pred CceEEEecccCCchHHHHHHHHhcCcEEEEEeeccccCCcccceeccccccCCceeEEEeccccchHHHHHHHHhcCchh
Confidence 57899999999999999999999999999999976544432211 12233344569999999999999999999999999
Q ss_pred EEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCC-CCeEEEEcCccccCCCCCCCCCCCCCCCCCCChHHHHHH
Q 012176 197 VLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNP-QPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKK 275 (469)
Q Consensus 197 Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~-~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y~~sK~ 275 (469)
|+|+||+..+..+.+.|....+++..|+.+|+++.+..+. +.+|...||+..||...+.|.+|..|. .|.++|+++|.
T Consensus 82 IYNLaAQS~V~vSFe~P~~T~~~~~iGtlrlLEaiR~~~~~~~rfYQAStSE~fG~v~~~pq~E~TPF-yPrSPYAvAKl 160 (345)
T COG1089 82 IYNLAAQSHVGVSFEQPEYTADVDAIGTLRLLEAIRILGEKKTRFYQASTSELYGLVQEIPQKETTPF-YPRSPYAVAKL 160 (345)
T ss_pred heeccccccccccccCcceeeeechhHHHHHHHHHHHhCCcccEEEecccHHhhcCcccCccccCCCC-CCCCHHHHHHH
Confidence 9999999999999999999999999999999999998775 358999999999999999999999988 89999999999
Q ss_pred HHHHHHHHHHHHhCCcEEEEeecceecCCCCCCChHH---HHHHHHHcCCceEEEeeCCCCcceEecccHHHHHHHHHHH
Q 012176 276 AGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYF---FFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGA 352 (469)
Q Consensus 276 ~~E~~~~~~~~~~gi~~~ilRp~~v~Gp~~~~~~~~~---~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~~~~~~ 352 (469)
.+..++..|++.||+-.+.-..++--+|......... .-+.++..|..-.++. |.-+..+||-|..|.+++++.+
T Consensus 161 Ya~W~tvNYResYgl~AcnGILFNHESP~Rge~FVTRKIt~ava~Ik~G~q~~l~l--GNldAkRDWG~A~DYVe~mwlm 238 (345)
T COG1089 161 YAYWITVNYRESYGLFACNGILFNHESPLRGETFVTRKITRAVARIKLGLQDKLYL--GNLDAKRDWGHAKDYVEAMWLM 238 (345)
T ss_pred HHHheeeehHhhcCceeecceeecCCCCCCccceehHHHHHHHHHHHccccceEEe--ccccccccccchHHHHHHHHHH
Confidence 9999999999999999888888888888666554433 3344556676666665 7789999999999999999999
Q ss_pred hccCCCCCCCCCceEEEeCCCCcccHHHHHHHHHHHhCCCcccee----------------e--cC--CCCCCCCcccCC
Q 012176 353 TGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHV----------------I--RM--PRNGDVPYTHAN 412 (469)
Q Consensus 353 ~~~~~~~~~~~~~~iyni~~~~~vt~~el~~~i~~~~g~~~~~~~----------------~--~~--~~~~~~~~~~~d 412 (469)
++++.. +.|.+++++..|++|++++..+.+|.+.++.- + ++ -++.++.....|
T Consensus 239 LQq~~P-------ddyViATg~t~sVrefv~~Af~~~g~~l~w~g~g~~e~g~da~~G~~~V~idp~~fRPaEV~~Llgd 311 (345)
T COG1089 239 LQQEEP-------DDYVIATGETHSVREFVELAFEMVGIDLEWEGTGVDEKGVDAKTGKIIVEIDPRYFRPAEVDLLLGD 311 (345)
T ss_pred HccCCC-------CceEEecCceeeHHHHHHHHHHHcCceEEEeeccccccccccccCceeEEECccccCchhhhhhcCC
Confidence 998742 89999999999999999999999997766531 1 11 135566677889
Q ss_pred hHHHHHhcCCCccCcHHHHHHHHHHHHHHHcC
Q 012176 413 VSLAYKDFGYKPTTDLAAGLRKFVKWYVSYYG 444 (469)
Q Consensus 413 ~~ka~~~LG~~p~~~l~~~l~~~v~~~~~~~~ 444 (469)
.+||+++|||+|++++++.+++|+++.++..+
T Consensus 312 p~KA~~~LGW~~~~~~~elv~~Mv~~dl~~~~ 343 (345)
T COG1089 312 PTKAKEKLGWRPEVSLEELVREMVEADLEAAR 343 (345)
T ss_pred HHHHHHHcCCccccCHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999877543
|
|
| >PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-35 Score=279.69 Aligned_cols=233 Identities=33% Similarity=0.491 Sum_probs=207.2
Q ss_pred EEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCccEEEEc
Q 012176 121 VLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTHVLHL 200 (469)
Q Consensus 121 VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~d~Vih~ 200 (469)
||||||+||||++++++|+++|++|+.+.|....... ... ..++.++.+|+.|.+.++++++...+|+|||+
T Consensus 1 IlI~GatG~iG~~l~~~l~~~g~~v~~~~~~~~~~~~---~~~-----~~~~~~~~~dl~~~~~~~~~~~~~~~d~vi~~ 72 (236)
T PF01370_consen 1 ILITGATGFIGSALVRQLLKKGHEVIVLSRSSNSESF---EEK-----KLNVEFVIGDLTDKEQLEKLLEKANIDVVIHL 72 (236)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTTEEEEEESCSTGGHH---HHH-----HTTEEEEESETTSHHHHHHHHHHHTESEEEEE
T ss_pred EEEEccCCHHHHHHHHHHHHcCCcccccccccccccc---ccc-----cceEEEEEeeccccccccccccccCceEEEEe
Confidence 7999999999999999999999999999986542111 111 11899999999999999999999899999999
Q ss_pred ccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcCccccCCCCCCCCCCCCCCCCCCChHHHHHHHHHHH
Q 012176 201 AAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEI 280 (469)
Q Consensus 201 Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y~~sK~~~E~~ 280 (469)
|+.........+....++.|+.++.+++++|++.+++ +||++||..+|+.....+++|+++. .|.+.|+.+|..+|++
T Consensus 73 a~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~-~~i~~sS~~~y~~~~~~~~~e~~~~-~~~~~Y~~~K~~~e~~ 150 (236)
T PF01370_consen 73 AAFSSNPESFEDPEEIIEANVQGTRNLLEAAREAGVK-RFIFLSSASVYGDPDGEPIDEDSPI-NPLSPYGASKRAAEEL 150 (236)
T ss_dssp BSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTTS-EEEEEEEGGGGTSSSSSSBETTSGC-CHSSHHHHHHHHHHHH
T ss_pred ecccccccccccccccccccccccccccccccccccc-ccccccccccccccccccccccccc-cccccccccccccccc
Confidence 9986544444788899999999999999999999995 9999999999999877789999988 8999999999999999
Q ss_pred HHHHHHHhCCcEEEEeecceecCC---CCCCChHHHHHHHHHcCCceEEEeeCCCCcceEecccHHHHHHHHHHHhccCC
Q 012176 281 AHTYNHIYGLALTGLRFFTVYGPW---GRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGATGSGG 357 (469)
Q Consensus 281 ~~~~~~~~gi~~~ilRp~~v~Gp~---~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~~~~~~~~~~~ 357 (469)
++.+.++++++++++||++||||+ ......++.++..+.+|+++.++ +++++.++|+|++|+|++++.+++++.
T Consensus 151 ~~~~~~~~~~~~~~~R~~~vyG~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~i~v~D~a~~~~~~~~~~~ 227 (236)
T PF01370_consen 151 LRDYAKKYGLRVTILRPPNVYGPGNPNNNSSSFLPSLIRQALKGKPIKIP---GDGSQVRDFIHVDDLAEAIVAALENPK 227 (236)
T ss_dssp HHHHHHHHTSEEEEEEESEEESTTSSSSSTSSHHHHHHHHHHTTSSEEEE---STSSCEEEEEEHHHHHHHHHHHHHHSC
T ss_pred ccccccccccccccccccccccccccccccccccchhhHHhhcCCccccc---CCCCCccceEEHHHHHHHHHHHHhCCC
Confidence 999999999999999999999998 56667889999999999999888 789999999999999999999999983
Q ss_pred CCCCCCCceEEEeC
Q 012176 358 KKRGPAQLRVYNLG 371 (469)
Q Consensus 358 ~~~~~~~~~iyni~ 371 (469)
..+++|||+
T Consensus 228 -----~~~~~yNig 236 (236)
T PF01370_consen 228 -----AAGGIYNIG 236 (236)
T ss_dssp -----TTTEEEEES
T ss_pred -----CCCCEEEeC
Confidence 456999996
|
The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B .... |
| >PLN02686 cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-35 Score=299.15 Aligned_cols=293 Identities=16% Similarity=0.103 Sum_probs=219.4
Q ss_pred CCCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhc-------cCCeEEEEecCCCHHHHH
Q 012176 114 RRPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQ-------KHQVFIVEGDLNDAPLLT 186 (469)
Q Consensus 114 ~~~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~-------~~~v~~v~~Dl~d~~~l~ 186 (469)
...++|+||||||+||||++++++|+++|++|+++.|+... .... ..... ..+++++.+|++|.+.+.
T Consensus 49 ~~~~~k~VLVTGatGfIG~~lv~~L~~~G~~V~~~~r~~~~----~~~l-~~l~~~~~~~~~~~~~~~v~~Dl~d~~~l~ 123 (367)
T PLN02686 49 ADAEARLVCVTGGVSFLGLAIVDRLLRHGYSVRIAVDTQED----KEKL-REMEMFGEMGRSNDGIWTVMANLTEPESLH 123 (367)
T ss_pred cCCCCCEEEEECCchHHHHHHHHHHHHCCCEEEEEeCCHHH----HHHH-HHHhhhccccccCCceEEEEcCCCCHHHHH
Confidence 34678999999999999999999999999999998875321 1111 11100 125889999999999999
Q ss_pred HhhccCCccEEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhc-CCCCeEEEEcCc--cccCCC--CC--CCCCC
Q 012176 187 KLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSV-NPQPSIVWASSS--SVYGLN--TQ--VPFSE 259 (469)
Q Consensus 187 ~~~~~~~~d~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~-~~~~~~V~~SS~--~vyg~~--~~--~~~~E 259 (469)
++++++ |+|||+|+...............++|+.++.+++++|++. +++ +|||+||. .+||.. .. .+++|
T Consensus 124 ~~i~~~--d~V~hlA~~~~~~~~~~~~~~~~~~nv~gt~~llea~~~~~~v~-r~V~~SS~~~~vyg~~~~~~~~~~i~E 200 (367)
T PLN02686 124 EAFDGC--AGVFHTSAFVDPAGLSGYTKSMAELEAKASENVIEACVRTESVR-KCVFTSSLLACVWRQNYPHDLPPVIDE 200 (367)
T ss_pred HHHHhc--cEEEecCeeecccccccccchhhhhhHHHHHHHHHHHHhcCCcc-EEEEeccHHHhcccccCCCCCCcccCC
Confidence 999987 9999999975432211222456788999999999999986 676 99999996 577642 11 23566
Q ss_pred CCC-----CCCCCChHHHHHHHHHHHHHHHHHHhCCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCc
Q 012176 260 SHR-----TDQPASLYAATKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDRE 334 (469)
Q Consensus 260 ~~~-----~~~p~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 334 (469)
+++ +..|.+.|+.+|.++|.+++.+++.+|++++++||++||||+...... ..++ .++.+. +.++ + +
T Consensus 201 ~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~gl~~v~lRp~~vyGp~~~~~~~-~~~~-~~~~g~-~~~~---g--~ 272 (367)
T PLN02686 201 ESWSDESFCRDNKLWYALGKLKAEKAAWRAARGKGLKLATICPALVTGPGFFRRNS-TATI-AYLKGA-QEML---A--D 272 (367)
T ss_pred CCCCChhhcccccchHHHHHHHHHHHHHHHHHhcCceEEEEcCCceECCCCCCCCC-hhHH-HHhcCC-CccC---C--C
Confidence 532 124667899999999999999998889999999999999997543221 1122 344554 4455 2 3
Q ss_pred ceEecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCCcccHHHHHHHHHHHhCCCccceeecCCCCCCCCcccCChH
Q 012176 335 VARDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRNGDVPYTHANVS 414 (469)
Q Consensus 335 ~~~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~~vt~~el~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~d~~ 414 (469)
..++|+||+|+|++++.+++.... ...+++| +++++++++.|+++.+.+.+|.+......+....++...+.+|++
T Consensus 273 g~~~~v~V~Dva~A~~~al~~~~~---~~~~~~y-i~~g~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~d~~~~~~d~~ 348 (367)
T PLN02686 273 GLLATADVERLAEAHVCVYEAMGN---KTAFGRY-ICFDHVVSREDEAEELARQIGLPINKIAGNSSSDDTPARFELSNK 348 (367)
T ss_pred CCcCeEEHHHHHHHHHHHHhccCC---CCCCCcE-EEeCCCccHHHHHHHHHHHcCCCCCcCCCchhhcCCcccccccHH
Confidence 345799999999999999975311 1234688 888899999999999999999876554333322678888999999
Q ss_pred HHHHhcCCCccC
Q 012176 415 LAYKDFGYKPTT 426 (469)
Q Consensus 415 ka~~~LG~~p~~ 426 (469)
|++++|||+|+-
T Consensus 349 kl~~~l~~~~~~ 360 (367)
T PLN02686 349 KLSRLMSRTRRC 360 (367)
T ss_pred HHHHHHHHhhhc
Confidence 999999999874
|
|
| >TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-35 Score=289.59 Aligned_cols=276 Identities=18% Similarity=0.197 Sum_probs=218.8
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCC--CcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCC
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRG--DGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVP 193 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~ 193 (469)
.++|+||||||+||||++++++|+++| ++|++++|.... ... ........++.++.+|++|.+.+.++++++
T Consensus 2 ~~~k~vLVTGatG~IG~~l~~~L~~~g~~~~V~~~~r~~~~----~~~-~~~~~~~~~~~~v~~Dl~d~~~l~~~~~~i- 75 (324)
T TIGR03589 2 FNNKSILITGGTGSFGKAFISRLLENYNPKKIIIYSRDELK----QWE-MQQKFPAPCLRFFIGDVRDKERLTRALRGV- 75 (324)
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHhCCCcEEEEEcCChhH----HHH-HHHHhCCCcEEEEEccCCCHHHHHHHHhcC-
Confidence 357899999999999999999999986 789999885421 111 111122247899999999999999999876
Q ss_pred ccEEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcCccccCCCCCCCCCCCCCCCCCCChHHHH
Q 012176 194 FTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAAT 273 (469)
Q Consensus 194 ~d~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y~~s 273 (469)
|+|||+||.......+.++..++++|+.|+.+++++|++.+++ +||++||...+ .|.+.|+.+
T Consensus 76 -D~Vih~Ag~~~~~~~~~~~~~~~~~Nv~g~~~ll~aa~~~~~~-~iV~~SS~~~~---------------~p~~~Y~~s 138 (324)
T TIGR03589 76 -DYVVHAAALKQVPAAEYNPFECIRTNINGAQNVIDAAIDNGVK-RVVALSTDKAA---------------NPINLYGAT 138 (324)
T ss_pred -CEEEECcccCCCchhhcCHHHHHHHHHHHHHHHHHHHHHcCCC-EEEEEeCCCCC---------------CCCCHHHHH
Confidence 9999999976554556677889999999999999999998876 99999995422 456789999
Q ss_pred HHHHHHHHHHHHH---HhCCcEEEEeecceecCCCCCCChHHHHHHHHHcCC-ceEEEeeCCCCcceEecccHHHHHHHH
Q 012176 274 KKAGEEIAHTYNH---IYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGK-TIDVYKTQDDREVARDFTYIDDVVKGC 349 (469)
Q Consensus 274 K~~~E~~~~~~~~---~~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~v~v~Dva~~~ 349 (469)
|.++|.+++.++. .+|++++++|||+||||++. +++.+...+..+. ++++. ++++.++|+|++|+|+++
T Consensus 139 K~~~E~l~~~~~~~~~~~gi~~~~lR~g~v~G~~~~---~i~~~~~~~~~~~~~~~i~----~~~~~r~~i~v~D~a~a~ 211 (324)
T TIGR03589 139 KLASDKLFVAANNISGSKGTRFSVVRYGNVVGSRGS---VVPFFKSLKEEGVTELPIT----DPRMTRFWITLEQGVNFV 211 (324)
T ss_pred HHHHHHHHHHHHhhccccCcEEEEEeecceeCCCCC---cHHHHHHHHHhCCCCeeeC----CCCceEeeEEHHHHHHHH
Confidence 9999999987653 46899999999999999653 5677777777776 56654 467889999999999999
Q ss_pred HHHhccCCCCCCCCCceEEEeCCCCcccHHHHHHHHHHHhCCCccceeecCCCCCCC-CcccCChHHHHHhcCCCccCcH
Q 012176 350 VGATGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRNGDV-PYTHANVSLAYKDFGYKPTTDL 428 (469)
Q Consensus 350 ~~~~~~~~~~~~~~~~~iyni~~~~~vt~~el~~~i~~~~g~~~~~~~~~~~~~~~~-~~~~~d~~ka~~~LG~~p~~~l 428 (469)
+.++++.. .+++| ++.+..+++.|+++.+.+..+. ...+ .+.++. ....+|.++++++|||+|++++
T Consensus 212 ~~al~~~~------~~~~~-~~~~~~~sv~el~~~i~~~~~~----~~~~-~~~g~~~~~~~~~~~~~~~~lg~~~~~~l 279 (324)
T TIGR03589 212 LKSLERML------GGEIF-VPKIPSMKITDLAEAMAPECPH----KIVG-IRPGEKLHEVMITEDDARHTYELGDYYAI 279 (324)
T ss_pred HHHHhhCC------CCCEE-ccCCCcEEHHHHHHHHHhhCCe----eEeC-CCCCchhHhhhcChhhhhhhcCCCCeEEE
Confidence 99997631 23788 4666679999999999986532 2222 245553 3356899999999999999999
Q ss_pred HHHHH
Q 012176 429 AAGLR 433 (469)
Q Consensus 429 ~~~l~ 433 (469)
+++++
T Consensus 280 ~~~~~ 284 (324)
T TIGR03589 280 LPSIS 284 (324)
T ss_pred ccccc
Confidence 99986
|
This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family. |
| >KOG1430 consensus C-3 sterol dehydrogenase/3-beta-hydroxysteroid dehydrogenase and related dehydrogenases [Lipid transport and metabolism; Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=284.46 Aligned_cols=318 Identities=21% Similarity=0.251 Sum_probs=253.5
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCC--CcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCC
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRG--DGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVP 193 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~ 193 (469)
..+.+|+||||+||+|+||+++|++++ .+|+++|....... ........ ....+..+.+|+.|...+.++++++
T Consensus 2 ~~~~~vlVtGG~GflG~hlv~~L~~~~~~~~irv~D~~~~~~~--~~~e~~~~-~~~~v~~~~~D~~~~~~i~~a~~~~- 77 (361)
T KOG1430|consen 2 EKKLSVLVTGGSGFLGQHLVQALLENELKLEIRVVDKTPTQSN--LPAELTGF-RSGRVTVILGDLLDANSISNAFQGA- 77 (361)
T ss_pred CcCCEEEEECCccHHHHHHHHHHHhcccccEEEEeccCccccc--cchhhhcc-cCCceeEEecchhhhhhhhhhccCc-
Confidence 456799999999999999999999998 79999987553110 11111111 3568999999999999999999876
Q ss_pred ccEEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcCccccCCCCCCCCCCCCCC--CCCCChHH
Q 012176 194 FTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRT--DQPASLYA 271 (469)
Q Consensus 194 ~d~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~--~~p~~~Y~ 271 (469)
.|+|+|+...+.....+++.++++|+.||.+++++|++.|++ ++||+||..|+.........+++.+ ....+.|+
T Consensus 78 --~Vvh~aa~~~~~~~~~~~~~~~~vNV~gT~nvi~~c~~~~v~-~lIYtSs~~Vvf~g~~~~n~~E~~p~p~~~~d~Y~ 154 (361)
T KOG1430|consen 78 --VVVHCAASPVPDFVENDRDLAMRVNVNGTLNVIEACKELGVK-RLIYTSSAYVVFGGEPIINGDESLPYPLKHIDPYG 154 (361)
T ss_pred --eEEEeccccCccccccchhhheeecchhHHHHHHHHHHhCCC-EEEEecCceEEeCCeecccCCCCCCCccccccccc
Confidence 677777776666677789999999999999999999999998 9999999999876655444444333 23346899
Q ss_pred HHHHHHHHHHHHHHHHhCCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceEecccHHHHHHHHHH
Q 012176 272 ATKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVG 351 (469)
Q Consensus 272 ~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~~~~~ 351 (469)
.+|..+|.++.+.+...++..++|||..||||++.. .++.+...+..|+.+... ++++.+.++++++.|+.+++.
T Consensus 155 ~sKa~aE~~Vl~an~~~~l~T~aLR~~~IYGpgd~~--~~~~i~~~~~~g~~~f~~---g~~~~~~~~~~~~Nva~ahil 229 (361)
T KOG1430|consen 155 ESKALAEKLVLEANGSDDLYTCALRPPGIYGPGDKR--LLPKIVEALKNGGFLFKI---GDGENLNDFTYGENVAWAHIL 229 (361)
T ss_pred hHHHHHHHHHHHhcCCCCeeEEEEccccccCCCCcc--ccHHHHHHHHccCceEEe---eccccccceEEechhHHHHHH
Confidence 999999999999997668999999999999998875 556788888889888777 567899999999999999999
Q ss_pred HhccCCCCCCCCCceEEEeCCCCcccHHHHHHHHHHHhCCCcc-ceeecCC-------------------CCCC------
Q 012176 352 ATGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAK-KHVIRMP-------------------RNGD------ 405 (469)
Q Consensus 352 ~~~~~~~~~~~~~~~iyni~~~~~vt~~el~~~i~~~~g~~~~-~~~~~~~-------------------~~~~------ 405 (469)
+...-........|++|+|+++.++...++...+.+.+|...+ ....|.. .+.-
T Consensus 230 A~~aL~~~~~~~~Gq~yfI~d~~p~~~~~~~~~l~~~lg~~~~~~~~~p~~l~~~~~~l~e~~~~~l~p~~p~lt~~~v~ 309 (361)
T KOG1430|consen 230 AARALLDKSPSVNGQFYFITDDTPVRFFDFLSPLVKALGYCLPSSIKLPLFLSYFLAYLLEIVYFLLRPYQPILTRFRVA 309 (361)
T ss_pred HHHHHHhcCCccCceEEEEeCCCcchhhHHHHHHHHhcCCCCCceeecchHHHHHHHHHHHHHHHhccCCCCCcChhhee
Confidence 8543322333577899999999999999999999999999877 3333311 1110
Q ss_pred --CCcccCChHHHHHhcCCCccCcHHHHHHHHHHHHHHHcCC
Q 012176 406 --VPYTHANVSLAYKDFGYKPTTDLAAGLRKFVKWYVSYYGI 445 (469)
Q Consensus 406 --~~~~~~d~~ka~~~LG~~p~~~l~~~l~~~v~~~~~~~~~ 445 (469)
.....++..||+++|||+|..++++++.+++.|+......
T Consensus 310 ~~~~~~~f~~~kA~~~lgY~P~~~~~e~~~~~~~~~~~~~~~ 351 (361)
T KOG1430|consen 310 LLGVTRTFSIEKAKRELGYKPLVSLEEAIQRTIHWVASESDS 351 (361)
T ss_pred eeccccccCHHHHHHhhCCCCcCCHHHHHHHHHHHHhhhhhc
Confidence 1134689999999999999999999999999988766553
|
|
| >CHL00194 ycf39 Ycf39; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-33 Score=276.52 Aligned_cols=276 Identities=17% Similarity=0.188 Sum_probs=213.2
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCccEEE
Q 012176 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTHVL 198 (469)
Q Consensus 119 ~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~d~Vi 198 (469)
|+|+|||||||||++++++|+++||+|++++|+.+ ....+...+++++.+|+.|++++.++++++ |+||
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~~~---------~~~~l~~~~v~~v~~Dl~d~~~l~~al~g~--d~Vi 69 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDEGYQVRCLVRNLR---------KASFLKEWGAELVYGDLSLPETLPPSFKGV--TAII 69 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCeEEEEEcChH---------HhhhHhhcCCEEEECCCCCHHHHHHHHCCC--CEEE
Confidence 68999999999999999999999999999999532 111122348999999999999999999988 9999
Q ss_pred EcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcCccccCCCCCCCCCCCCCCCCCCChHHHHHHHHH
Q 012176 199 HLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGE 278 (469)
Q Consensus 199 h~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y~~sK~~~E 278 (469)
|+++.. ..++....++|+.++.+++++|+++|++ +||++||.++.. .+...|..+|..+|
T Consensus 70 ~~~~~~-----~~~~~~~~~~~~~~~~~l~~aa~~~gvk-r~I~~Ss~~~~~--------------~~~~~~~~~K~~~e 129 (317)
T CHL00194 70 DASTSR-----PSDLYNAKQIDWDGKLALIEAAKAAKIK-RFIFFSILNAEQ--------------YPYIPLMKLKSDIE 129 (317)
T ss_pred ECCCCC-----CCCccchhhhhHHHHHHHHHHHHHcCCC-EEEEeccccccc--------------cCCChHHHHHHHHH
Confidence 998642 1345567889999999999999999997 999999854321 12356899999999
Q ss_pred HHHHHHHHHhCCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceEecccHHHHHHHHHHHhccCCC
Q 012176 279 EIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGATGSGGK 358 (469)
Q Consensus 279 ~~~~~~~~~~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~~~~~~~~~~~~ 358 (469)
+++++ ++++++++||+.+|+.. +..+...+..++++.+. ++++.++|+|++|+|++++.+++++
T Consensus 130 ~~l~~----~~l~~tilRp~~~~~~~------~~~~~~~~~~~~~~~~~----~~~~~~~~i~v~Dva~~~~~~l~~~-- 193 (317)
T CHL00194 130 QKLKK----SGIPYTIFRLAGFFQGL------ISQYAIPILEKQPIWIT----NESTPISYIDTQDAAKFCLKSLSLP-- 193 (317)
T ss_pred HHHHH----cCCCeEEEeecHHhhhh------hhhhhhhhccCCceEec----CCCCccCccCHHHHHHHHHHHhcCc--
Confidence 88764 68999999999888631 11222223345554443 3567789999999999999999875
Q ss_pred CCCCCCceEEEeCCCCcccHHHHHHHHHHHhCCCccceeecCCCC--------------------------CCCCcccCC
Q 012176 359 KRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRN--------------------------GDVPYTHAN 412 (469)
Q Consensus 359 ~~~~~~~~iyni~~~~~vt~~el~~~i~~~~g~~~~~~~~~~~~~--------------------------~~~~~~~~d 412 (469)
...+++||+++++.+|+.|+++.+.+.+|++..+..+|.... +.......+
T Consensus 194 ---~~~~~~~ni~g~~~~s~~el~~~~~~~~g~~~~~~~vp~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 270 (317)
T CHL00194 194 ---ETKNKTFPLVGPKSWNSSEIISLCEQLSGQKAKISRVPLFLLKLLRQITGFFEWTWNISDRLAFVEILNTSNNFSSS 270 (317)
T ss_pred ---cccCcEEEecCCCccCHHHHHHHHHHHhCCCCeEEeCCHHHHHHHHHHHhhcccchhhHHHHHHHHHHhcCCCcCCC
Confidence 234699999999999999999999999999877666652110 011123456
Q ss_pred hHHHHHhcCCCcc--CcHHHHHHHHHHHHHHHcC
Q 012176 413 VSLAYKDFGYKPT--TDLAAGLRKFVKWYVSYYG 444 (469)
Q Consensus 413 ~~ka~~~LG~~p~--~~l~~~l~~~v~~~~~~~~ 444 (469)
...+++.||+.|. +++++++++.++-.++..+
T Consensus 271 ~~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~ 304 (317)
T CHL00194 271 MAELYKIFKIDPNELISLEDYFQEYFERILKRLK 304 (317)
T ss_pred HHHHHHHhCCChhhhhhHHHHHHHHHHHHHHHHH
Confidence 7788899999984 5799999999888877554
|
|
| >PLN02778 3,5-epimerase/4-reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-32 Score=264.57 Aligned_cols=274 Identities=15% Similarity=0.202 Sum_probs=208.7
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCcc
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFT 195 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~d 195 (469)
...|+||||||+||||++|+++|+++|++|+... +|+.|.+.+...++..++|
T Consensus 7 ~~~~kiLVtG~tGfiG~~l~~~L~~~g~~V~~~~---------------------------~~~~~~~~v~~~l~~~~~D 59 (298)
T PLN02778 7 SATLKFLIYGKTGWIGGLLGKLCQEQGIDFHYGS---------------------------GRLENRASLEADIDAVKPT 59 (298)
T ss_pred CCCCeEEEECCCCHHHHHHHHHHHhCCCEEEEec---------------------------CccCCHHHHHHHHHhcCCC
Confidence 3458999999999999999999999999987532 3456667777777777789
Q ss_pred EEEEcccccCh---hhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcCccccCCCC------CCCCCCCCCCCCC
Q 012176 196 HVLHLAAQAGV---RYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNT------QVPFSESHRTDQP 266 (469)
Q Consensus 196 ~Vih~Aa~~~~---~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS~~vyg~~~------~~~~~E~~~~~~p 266 (469)
+|||+||..+. .+.+.++...+++|+.++.+|+++|++.++ ++|++||.++|+... ..+++|++++..+
T Consensus 60 ~ViH~Aa~~~~~~~~~~~~~p~~~~~~Nv~gt~~ll~aa~~~gv--~~v~~sS~~vy~~~~~~p~~~~~~~~Ee~~p~~~ 137 (298)
T PLN02778 60 HVFNAAGVTGRPNVDWCESHKVETIRANVVGTLTLADVCRERGL--VLTNYATGCIFEYDDAHPLGSGIGFKEEDTPNFT 137 (298)
T ss_pred EEEECCcccCCCCchhhhhCHHHHHHHHHHHHHHHHHHHHHhCC--CEEEEecceEeCCCCCCCcccCCCCCcCCCCCCC
Confidence 99999998642 345678889999999999999999999987 467778888886432 2357888877556
Q ss_pred CChHHHHHHHHHHHHHHHHHHhCCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceEecccHHHHH
Q 012176 267 ASLYAATKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVV 346 (469)
Q Consensus 267 ~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva 346 (469)
.+.|+.+|+++|.++..+++ ..++|++.++|++.. ....|+..++.+.++... + .+|+|++|++
T Consensus 138 ~s~Yg~sK~~~E~~~~~y~~-----~~~lr~~~~~~~~~~---~~~~fi~~~~~~~~~~~~-----~---~s~~yv~D~v 201 (298)
T PLN02778 138 GSFYSKTKAMVEELLKNYEN-----VCTLRVRMPISSDLS---NPRNFITKITRYEKVVNI-----P---NSMTILDELL 201 (298)
T ss_pred CCchHHHHHHHHHHHHHhhc-----cEEeeecccCCcccc---cHHHHHHHHHcCCCeeEc-----C---CCCEEHHHHH
Confidence 68999999999999998764 468888887886422 123577888888776554 1 2799999999
Q ss_pred HHHHHHhccCCCCCCCCCceEEEeCCCCcccHHHHHHHHHHHhCCCccceeecCCCC-----CCCCcccCChHHHHHhcC
Q 012176 347 KGCVGATGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRN-----GDVPYTHANVSLAYKDFG 421 (469)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~iyni~~~~~vt~~el~~~i~~~~g~~~~~~~~~~~~~-----~~~~~~~~d~~ka~~~LG 421 (469)
++++.++++.. +++||+++++++|+.|+++.+.+.+|.+.++.....+.. .+.....+|.+|+++.++
T Consensus 202 ~al~~~l~~~~-------~g~yNigs~~~iS~~el~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~Ld~~k~~~~~~ 274 (298)
T PLN02778 202 PISIEMAKRNL-------TGIYNFTNPGVVSHNEILEMYRDYIDPSFTWKNFTLEEQAKVIVAPRSNNELDTTKLKREFP 274 (298)
T ss_pred HHHHHHHhCCC-------CCeEEeCCCCcccHHHHHHHHHHHhCCCceeccccHHHHHHHHhCCCccccccHHHHHHhcc
Confidence 99999986531 279999999999999999999999996532211111100 011122699999999888
Q ss_pred CCccCcHHHHHHHHHHHHHHH
Q 012176 422 YKPTTDLAAGLRKFVKWYVSY 442 (469)
Q Consensus 422 ~~p~~~l~~~l~~~v~~~~~~ 442 (469)
-.+. ..++++++.++-++..
T Consensus 275 ~~~~-~~~~~~~~~~~~~~~~ 294 (298)
T PLN02778 275 ELLP-IKESLIKYVFEPNKKT 294 (298)
T ss_pred cccc-hHHHHHHHHHHHHHhh
Confidence 7555 5788888888877443
|
|
| >PRK05865 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-32 Score=291.55 Aligned_cols=273 Identities=19% Similarity=0.219 Sum_probs=205.5
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCccEEE
Q 012176 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTHVL 198 (469)
Q Consensus 119 ~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~d~Vi 198 (469)
|+|+||||+||||++++++|+++|++|++++|.... . . ..++.++.+|++|.+.+.++++++ |+||
T Consensus 1 MkILVTGATGfIGs~La~~Ll~~G~~Vv~l~R~~~~--------~---~-~~~v~~v~gDL~D~~~l~~al~~v--D~VV 66 (854)
T PRK05865 1 MRIAVTGASGVLGRGLTARLLSQGHEVVGIARHRPD--------S---W-PSSADFIAADIRDATAVESAMTGA--DVVA 66 (854)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCchh--------h---c-ccCceEEEeeCCCHHHHHHHHhCC--CEEE
Confidence 589999999999999999999999999999985321 0 0 126889999999999999999876 9999
Q ss_pred EcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcCccccCCCCCCCCCCCCCCCCCCChHHHHHHHHH
Q 012176 199 HLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGE 278 (469)
Q Consensus 199 h~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y~~sK~~~E 278 (469)
|||+.... .+++|+.++.+++++|++.+++ +||++||.. |.++|
T Consensus 67 HlAa~~~~---------~~~vNv~GT~nLLeAa~~~gvk-r~V~iSS~~--------------------------K~aaE 110 (854)
T PRK05865 67 HCAWVRGR---------NDHINIDGTANVLKAMAETGTG-RIVFTSSGH--------------------------QPRVE 110 (854)
T ss_pred ECCCcccc---------hHHHHHHHHHHHHHHHHHcCCC-eEEEECCcH--------------------------HHHHH
Confidence 99986321 4688999999999999999986 999999832 88888
Q ss_pred HHHHHHHHHhCCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceEecccHHHHHHHHHHHhccCCC
Q 012176 279 EIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGATGSGGK 358 (469)
Q Consensus 279 ~~~~~~~~~~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~~~~~~~~~~~~ 358 (469)
+++.+ ++++++++||++||||+.. .++..+.. +.++. .+++...++|+|++|+|++++.++++..
T Consensus 111 ~ll~~----~gl~~vILRp~~VYGP~~~------~~i~~ll~---~~v~~-~G~~~~~~dfIhVdDVA~Ai~~aL~~~~- 175 (854)
T PRK05865 111 QMLAD----CGLEWVAVRCALIFGRNVD------NWVQRLFA---LPVLP-AGYADRVVQVVHSDDAQRLLVRALLDTV- 175 (854)
T ss_pred HHHHH----cCCCEEEEEeceEeCCChH------HHHHHHhc---Cceec-cCCCCceEeeeeHHHHHHHHHHHHhCCC-
Confidence 87754 6999999999999999622 23433332 22221 1456677899999999999999986542
Q ss_pred CCCCCCceEEEeCCCCcccHHHHHHHHHHHhC---CCccceeecCCC-CCCCCcccCChHHHHHhcCCCccCcHHHHHHH
Q 012176 359 KRGPAQLRVYNLGNTSPVPVGRLVSILENLLN---TKAKKHVIRMPR-NGDVPYTHANVSLAYKDFGYKPTTDLAAGLRK 434 (469)
Q Consensus 359 ~~~~~~~~iyni~~~~~vt~~el~~~i~~~~g---~~~~~~~~~~~~-~~~~~~~~~d~~ka~~~LG~~p~~~l~~~l~~ 434 (469)
..+++|||++++.+|+.|+++.+.+... .+......+... ........+|++|++++|||+|+++++++|++
T Consensus 176 ----~~ggvyNIgsg~~~Si~EIae~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~D~sKar~~LGw~P~~sLeeGL~d 251 (854)
T PRK05865 176 ----IDSGPVNLAAPGELTFRRIAAALGRPMVPIGSPVLRRVTSFAELELLHSAPLMDVTLLRDRWGFQPAWNAEECLED 251 (854)
T ss_pred ----cCCCeEEEECCCcccHHHHHHHHhhhhccCCchhhhhccchhhhhcccCCccCCHHHHHHHhCCCCCCCHHHHHHH
Confidence 2348999999999999999999887542 111110000000 01112346899999999999999999999999
Q ss_pred HHHHHHHHcCCCCcccccCCccccccccc
Q 012176 435 FVKWYVSYYGIQPRVKKENGFSTTTSTIQ 463 (469)
Q Consensus 435 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (469)
+++||+.....+. +...+-|...++|
T Consensus 252 ti~~~r~ri~~~~---~~~~~~~~~~~~~ 277 (854)
T PRK05865 252 FTLAVRGRIGLGK---RTFSLPWRLANIQ 277 (854)
T ss_pred HHHHHHhhccccc---cccccchhhcccc
Confidence 9999988765543 3334445444444
|
|
| >KOG1431 consensus GDP-L-fucose synthetase [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-31 Score=237.95 Aligned_cols=294 Identities=19% Similarity=0.202 Sum_probs=243.1
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHCCC--cEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCcc
Q 012176 118 GMTVLVTGAAGFVGSHCSLALKKRGD--GVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFT 195 (469)
Q Consensus 118 ~~~VlVtGatG~IG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~d 195 (469)
.|+|||||++|.+|++|.+.+.+.|. +=.++.- .-.+|+++.++.+++|+..+|.
T Consensus 1 s~kIlVtGg~GLVGsAi~~vv~~q~~~~e~wvf~~-----------------------skd~DLt~~a~t~~lF~~ekPt 57 (315)
T KOG1431|consen 1 SKKILVTGGTGLVGSAIVKVVQEQGFDDENWVFIG-----------------------SKDADLTNLADTRALFESEKPT 57 (315)
T ss_pred CceEEEecCCchHHHHHHHHHHhcCCCCcceEEec-----------------------cccccccchHHHHHHHhccCCc
Confidence 37899999999999999999999875 2222211 1247999999999999999999
Q ss_pred EEEEcccccChh-hhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcCccccCCCCCCCCCCCC----CCCCCCChH
Q 012176 196 HVLHLAAQAGVR-YAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESH----RTDQPASLY 270 (469)
Q Consensus 196 ~Vih~Aa~~~~~-~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~----~~~~p~~~Y 270 (469)
+|||+|+.++.- .....+.+.++.|++-.-|++..|.++|++ ++|++-|.++|......|++|.. ++.+..-.|
T Consensus 58 hVIhlAAmVGGlf~N~~ynldF~r~Nl~indNVlhsa~e~gv~-K~vsclStCIfPdkt~yPIdEtmvh~gpphpsN~gY 136 (315)
T KOG1431|consen 58 HVIHLAAMVGGLFHNNTYNLDFIRKNLQINDNVLHSAHEHGVK-KVVSCLSTCIFPDKTSYPIDETMVHNGPPHPSNFGY 136 (315)
T ss_pred eeeehHhhhcchhhcCCCchHHHhhcceechhHHHHHHHhchh-hhhhhcceeecCCCCCCCCCHHHhccCCCCCCchHH
Confidence 999999986654 345667789999999999999999999998 99999999999999999999964 343445679
Q ss_pred HHHHHHHHHHHHHHHHHhCCcEEEEeecceecCCCCCCC----hHHHHHHH----HHcCC-ceEEEeeCCCCcceEeccc
Q 012176 271 AATKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPDM----AYFFFTKD----ILQGK-TIDVYKTQDDREVARDFTY 341 (469)
Q Consensus 271 ~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~Gp~~~~~~----~~~~~~~~----~~~g~-~~~~~~~~~~~~~~~~~v~ 341 (469)
+.+|+++.-.-+.|+.++|-.++.+-|.+||||.++.+. .++.++.+ ...|. ++.++ |+|..++.|+|
T Consensus 137 syAKr~idv~n~aY~~qhg~~~tsviPtNvfGphDNfnpe~sHVlPali~r~h~ak~~gtd~~~Vw---GsG~PlRqFiy 213 (315)
T KOG1431|consen 137 SYAKRMIDVQNQAYRQQHGRDYTSVIPTNVFGPHDNFNPENSHVLPALIHRFHEAKRNGTDELTVW---GSGSPLRQFIY 213 (315)
T ss_pred HHHHHHHHHHHHHHHHHhCCceeeeccccccCCCCCCCcccccchHHHHHHHHHHHhcCCceEEEe---cCCChHHHHhh
Confidence 999998888889999999999999999999999876543 34555444 34455 77888 78999999999
Q ss_pred HHHHHHHHHHHhccCCCCCCCCCceEEEeCCCC--cccHHHHHHHHHHHhCCCccceeecCCCCCCCCcccCChHHHHHh
Q 012176 342 IDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTS--PVPVGRLVSILENLLNTKAKKHVIRMPRNGDVPYTHANVSLAYKD 419 (469)
Q Consensus 342 v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~--~vt~~el~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~d~~ka~~~ 419 (469)
++|+|++++.++.+-+.. +-.+++.++ .+|.+|+++++.++++.+.+..+......|... ..++++|++.
T Consensus 214 s~DLA~l~i~vlr~Y~~v------Epiils~ge~~EVtI~e~aeaV~ea~~F~G~l~~DttK~DGq~k-KtasnsKL~s- 285 (315)
T KOG1431|consen 214 SDDLADLFIWVLREYEGV------EPIILSVGESDEVTIREAAEAVVEAVDFTGKLVWDTTKSDGQFK-KTASNSKLRS- 285 (315)
T ss_pred HhHHHHHHHHHHHhhcCc------cceEeccCccceeEHHHHHHHHHHHhCCCceEEeeccCCCCCcc-cccchHHHHH-
Confidence 999999999999876432 556777766 899999999999999999988877666555554 4588899865
Q ss_pred cCCCccCc-HHHHHHHHHHHHHHHcCCC
Q 012176 420 FGYKPTTD-LAAGLRKFVKWYVSYYGIQ 446 (469)
Q Consensus 420 LG~~p~~~-l~~~l~~~v~~~~~~~~~~ 446 (469)
|+|.|+.+ |+++|.+.++||.++|...
T Consensus 286 l~pd~~ft~l~~ai~~t~~Wy~~Ny~qa 313 (315)
T KOG1431|consen 286 LLPDFKFTPLEQAISETVQWYLDNYEQA 313 (315)
T ss_pred hCCCcccChHHHHHHHHHHHHHHhHHhh
Confidence 99999976 9999999999999998753
|
|
| >PLN02996 fatty acyl-CoA reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-31 Score=276.49 Aligned_cols=265 Identities=20% Similarity=0.253 Sum_probs=201.2
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCC---cEEEEeCCCCCCChhHHHHHHH-----hh--------------ccCCeE
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGD---GVLGLDNFNSYYDPSLKRARQK-----LL--------------QKHQVF 173 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~---~V~~~~r~~~~~~~~~~~~~~~-----~~--------------~~~~v~ 173 (469)
.++|+|||||||||||++|++.|++.+. +|+++.|.+...... .+.... .. ...+++
T Consensus 9 ~~~k~VlvTGaTGFlG~~ll~~LL~~~~~v~~I~~LvR~~~~~~~~-~rl~~~~~~~~~f~~~~~~~~~~~~~~~~~kv~ 87 (491)
T PLN02996 9 LENKTILVTGATGFLAKIFVEKILRVQPNVKKLYLLLRASDAKSAT-QRLHDEVIGKDLFKVLREKLGENLNSLISEKVT 87 (491)
T ss_pred hCCCeEEEeCCCcHHHHHHHHHHHhhCCCCCEEEEEEeCCCCCCHH-HHHHHHHhhchHHHHHHHhcchhhhhhhhcCEE
Confidence 6789999999999999999999998753 689999977643322 111100 00 115899
Q ss_pred EEEecCC-------CHHHHHHhhccCCccEEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhc-CCCCeEEEEcC
Q 012176 174 IVEGDLN-------DAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSV-NPQPSIVWASS 245 (469)
Q Consensus 174 ~v~~Dl~-------d~~~l~~~~~~~~~d~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~-~~~~~~V~~SS 245 (469)
++.||++ |.+.++.+++++ |+|||+||..... .+++...++|+.|+.+++++|++. +++ +|||+||
T Consensus 88 ~i~GDl~~~~LGLs~~~~~~~l~~~v--D~ViH~AA~v~~~---~~~~~~~~~Nv~gt~~ll~~a~~~~~~k-~~V~vST 161 (491)
T PLN02996 88 PVPGDISYDDLGVKDSNLREEMWKEI--DIVVNLAATTNFD---ERYDVALGINTLGALNVLNFAKKCVKVK-MLLHVST 161 (491)
T ss_pred EEecccCCcCCCCChHHHHHHHHhCC--CEEEECccccCCc---CCHHHHHHHHHHHHHHHHHHHHhcCCCC-eEEEEee
Confidence 9999998 555577888876 9999999986543 567889999999999999999986 554 9999999
Q ss_pred ccccCCCCC----CCCCCCCC----------------------------------------------CCCCCChHHHHHH
Q 012176 246 SSVYGLNTQ----VPFSESHR----------------------------------------------TDQPASLYAATKK 275 (469)
Q Consensus 246 ~~vyg~~~~----~~~~E~~~----------------------------------------------~~~p~~~Y~~sK~ 275 (469)
++|||...+ .++.+... ...+.+.|+.+|.
T Consensus 162 ~~vyG~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pn~Y~~TK~ 241 (491)
T PLN02996 162 AYVCGEKSGLILEKPFHMGETLNGNRKLDINEEKKLVKEKLKELNEQDASEEEITQAMKDLGMERAKLHGWPNTYVFTKA 241 (491)
T ss_pred eEEecCCCceeeeecCCCcccccccccCChHHHHHHHHHHHHHHHhhcCCHHHHHHHhhhhchhHHHhCCCCCchHhhHH
Confidence 999986432 12221100 0113467999999
Q ss_pred HHHHHHHHHHHHhCCcEEEEeecceecCCCCCCCh-------HHHHHHHHHcCCceEEEeeCCCCcceEecccHHHHHHH
Q 012176 276 AGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPDMA-------YFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKG 348 (469)
Q Consensus 276 ~~E~~~~~~~~~~gi~~~ilRp~~v~Gp~~~~~~~-------~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~~ 348 (469)
++|+++.+++. +++++++||++||||+..+... ...++..+..|....++ +++++.+|++||||+|++
T Consensus 242 ~aE~lv~~~~~--~lpv~i~RP~~V~G~~~~p~~gwi~~~~~~~~i~~~~~~g~~~~~~---gdg~~~~D~v~Vddvv~a 316 (491)
T PLN02996 242 MGEMLLGNFKE--NLPLVIIRPTMITSTYKEPFPGWIEGLRTIDSVIVGYGKGKLTCFL---ADPNSVLDVIPADMVVNA 316 (491)
T ss_pred HHHHHHHHhcC--CCCEEEECCCEeccCCcCCCCCcccchhhHHHHHHHhccceEeEEe---cCCCeecceecccHHHHH
Confidence 99999998764 8999999999999998765322 13445555667766666 789999999999999999
Q ss_pred HHHHhccCCCCCCCCCceEEEeCCC--CcccHHHHHHHHHHHhCCCcc
Q 012176 349 CVGATGSGGKKRGPAQLRVYNLGNT--SPVPVGRLVSILENLLNTKAK 394 (469)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~iyni~~~--~~vt~~el~~~i~~~~g~~~~ 394 (469)
++.++..... ....+++||++++ .++|+.|+++.+.+.++..+.
T Consensus 317 ~l~a~~~~~~--~~~~~~vYNi~s~~~~~~s~~ei~~~~~~~~~~~p~ 362 (491)
T PLN02996 317 MIVAMAAHAG--GQGSEIIYHVGSSLKNPVKFSNLHDFAYRYFSKNPW 362 (491)
T ss_pred HHHHHHHhhc--cCCCCcEEEecCCCCCcccHHHHHHHHHHHhhhCCC
Confidence 9999876311 0123589999998 899999999999999986653
|
|
| >PLN02583 cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.9e-30 Score=255.50 Aligned_cols=281 Identities=15% Similarity=0.088 Sum_probs=199.7
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhh-ccCCeEEEEecCCCHHHHHHhhccCCc
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLL-QKHQVFIVEGDLNDAPLLTKLFDVVPF 194 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~v~~v~~Dl~d~~~l~~~~~~~~~ 194 (469)
..+++||||||+||||++++++|+++|++|++++|+.... .......... ...+++++.+|++|.+.+.+++.++
T Consensus 4 ~~~k~vlVTGatG~IG~~lv~~Ll~~G~~V~~~~R~~~~~--~~~~~~~~l~~~~~~~~~~~~Dl~d~~~~~~~l~~~-- 79 (297)
T PLN02583 4 ESSKSVCVMDASGYVGFWLVKRLLSRGYTVHAAVQKNGET--EIEKEIRGLSCEEERLKVFDVDPLDYHSILDALKGC-- 79 (297)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEEcCchhh--hHHHHHHhcccCCCceEEEEecCCCHHHHHHHHcCC--
Confidence 3467899999999999999999999999999999853211 1111111111 1246889999999999999999988
Q ss_pred cEEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhc-CCCCeEEEEcCccccCCC-----CCCCCCCCCCCC----
Q 012176 195 THVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSV-NPQPSIVWASSSSVYGLN-----TQVPFSESHRTD---- 264 (469)
Q Consensus 195 d~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~-~~~~~~V~~SS~~vyg~~-----~~~~~~E~~~~~---- 264 (469)
|.|+|.++..... ..+.+.++++|+.|+.+++++|.+. +++ +||++||.++++.. ...+++|+++..
T Consensus 80 d~v~~~~~~~~~~--~~~~~~~~~~nv~gt~~ll~aa~~~~~v~-riV~~SS~~a~~~~~~~~~~~~~~~E~~~~~~~~~ 156 (297)
T PLN02583 80 SGLFCCFDPPSDY--PSYDEKMVDVEVRAAHNVLEACAQTDTIE-KVVFTSSLTAVIWRDDNISTQKDVDERSWSDQNFC 156 (297)
T ss_pred CEEEEeCccCCcc--cccHHHHHHHHHHHHHHHHHHHHhcCCcc-EEEEecchHheecccccCCCCCCCCcccCCCHHHH
Confidence 9999987653211 1245688999999999999999886 454 99999998765311 223567765431
Q ss_pred -CCCChHHHHHHHHHHHHHHHHHHhCCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceEecccHH
Q 012176 265 -QPASLYAATKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYID 343 (469)
Q Consensus 265 -~p~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~ 343 (469)
.+...|+.+|..+|+++..+++.+|+++++|||++||||+..... ..+.+.. ..+ ++..++|+||+
T Consensus 157 ~~~~~~Y~~sK~~aE~~~~~~~~~~gi~~v~lrp~~v~Gp~~~~~~-------~~~~~~~-~~~-----~~~~~~~v~V~ 223 (297)
T PLN02583 157 RKFKLWHALAKTLSEKTAWALAMDRGVNMVSINAGLLMGPSLTQHN-------PYLKGAA-QMY-----ENGVLVTVDVN 223 (297)
T ss_pred hhcccHHHHHHHHHHHHHHHHHHHhCCcEEEEcCCcccCCCCCCch-------hhhcCCc-ccC-----cccCcceEEHH
Confidence 112379999999999999998888999999999999999765321 1222322 222 23356899999
Q ss_pred HHHHHHHHHhccCCCCCCCCCceEEEeCCCCcccHHHHHHHHHHHhCCCccceeecCCCCCCCCcccCChHHHHHhcCCC
Q 012176 344 DVVKGCVGATGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRNGDVPYTHANVSLAYKDFGYK 423 (469)
Q Consensus 344 Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~~vt~~el~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~d~~ka~~~LG~~ 423 (469)
|+|++++.+++.+. + ++.|+++++....+.++++++.+.++.-....... ....+.....++++|++ +|||+
T Consensus 224 Dva~a~~~al~~~~-----~-~~r~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~-~~~~~~~~~~~~~~k~~-~l~~~ 295 (297)
T PLN02583 224 FLVDAHIRAFEDVS-----S-YGRYLCFNHIVNTEEDAVKLAQMLSPLIPSPPPYE-MQGSEVYQQRIRNKKLN-KLMED 295 (297)
T ss_pred HHHHHHHHHhcCcc-----c-CCcEEEecCCCccHHHHHHHHHHhCCCCCCCCccc-ccCCCccccccChHHHH-HhCcc
Confidence 99999999998652 2 25798888775667889999999987532111001 00112233567888885 59987
Q ss_pred c
Q 012176 424 P 424 (469)
Q Consensus 424 p 424 (469)
.
T Consensus 296 ~ 296 (297)
T PLN02583 296 F 296 (297)
T ss_pred c
Confidence 4
|
|
| >PRK07201 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.6e-30 Score=283.37 Aligned_cols=304 Identities=19% Similarity=0.193 Sum_probs=220.7
Q ss_pred CEEEEEcCCChhHHHHHHHHH--HCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCH------HHHHHhhc
Q 012176 119 MTVLVTGAAGFVGSHCSLALK--KRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDA------PLLTKLFD 190 (469)
Q Consensus 119 ~~VlVtGatG~IG~~l~~~L~--~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~------~~l~~~~~ 190 (469)
|+|||||||||||++|+++|+ +.|++|++++|.... ....... ......+++++.+|++|+ +.++++ +
T Consensus 1 m~ILVTGatGfIG~~lv~~Ll~~~~g~~V~~l~R~~~~--~~~~~~~-~~~~~~~v~~~~~Dl~~~~~~~~~~~~~~l-~ 76 (657)
T PRK07201 1 MRYFVTGGTGFIGRRLVSRLLDRRREATVHVLVRRQSL--SRLEALA-AYWGADRVVPLVGDLTEPGLGLSEADIAEL-G 76 (657)
T ss_pred CeEEEeCCccHHHHHHHHHHHhcCCCCEEEEEECcchH--HHHHHHH-HhcCCCcEEEEecccCCccCCcCHHHHHHh-c
Confidence 589999999999999999999 579999999994321 1111111 111225799999999984 456555 5
Q ss_pred cCCccEEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcCccccCCCCCCCCCCCCCC--CCCCC
Q 012176 191 VVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRT--DQPAS 268 (469)
Q Consensus 191 ~~~~d~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~--~~p~~ 268 (469)
++ |+||||||..... .......++|+.++.+++++|++.+++ +|||+||.++||.... +++|++.. ..+.+
T Consensus 77 ~~--D~Vih~Aa~~~~~---~~~~~~~~~nv~gt~~ll~~a~~~~~~-~~v~~SS~~v~g~~~~-~~~e~~~~~~~~~~~ 149 (657)
T PRK07201 77 DI--DHVVHLAAIYDLT---ADEEAQRAANVDGTRNVVELAERLQAA-TFHHVSSIAVAGDYEG-VFREDDFDEGQGLPT 149 (657)
T ss_pred CC--CEEEECceeecCC---CCHHHHHHHHhHHHHHHHHHHHhcCCC-eEEEEeccccccCccC-ccccccchhhcCCCC
Confidence 55 9999999975432 345678899999999999999999876 9999999999986543 45555422 13457
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCcEEEEeecceecCCCCCCC-------hHHHHHHHHHc-CCceEEEeeCCCCcceEecc
Q 012176 269 LYAATKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPDM-------AYFFFTKDILQ-GKTIDVYKTQDDREVARDFT 340 (469)
Q Consensus 269 ~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~Gp~~~~~~-------~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~v 340 (469)
.|+.+|.++|+++++. .|++++++||++||||...... .+..++..+.. ...+++. +.+....+++
T Consensus 150 ~Y~~sK~~~E~~~~~~---~g~~~~ilRp~~v~G~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~v 223 (657)
T PRK07201 150 PYHRTKFEAEKLVREE---CGLPWRVYRPAVVVGDSRTGEMDKIDGPYYFFKVLAKLAKLPSWLPMV---GPDGGRTNIV 223 (657)
T ss_pred chHHHHHHHHHHHHHc---CCCcEEEEcCCeeeecCCCCccccCCcHHHHHHHHHHhccCCcccccc---cCCCCeeeee
Confidence 8999999999998752 4899999999999998643211 11122333211 1122333 4456778999
Q ss_pred cHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCCcccHHHHHHHHHHHhCCCc---cceeecCCC---------------
Q 012176 341 YIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKA---KKHVIRMPR--------------- 402 (469)
Q Consensus 341 ~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~~vt~~el~~~i~~~~g~~~---~~~~~~~~~--------------- 402 (469)
|++|++++++.++..+ ...+++||+++++++++.|+++.+.+.+|.+. ....+|...
T Consensus 224 ~vddva~ai~~~~~~~-----~~~g~~~ni~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 298 (657)
T PRK07201 224 PVDYVADALDHLMHKD-----GRDGQTFHLTDPKPQRVGDIYNAFARAAGAPPDARLFGFLPGFVAAPLLAALGPVRRLR 298 (657)
T ss_pred eHHHHHHHHHHHhcCc-----CCCCCEEEeCCCCCCcHHHHHHHHHHHhCCCccccccccCChHHHHHHhhhcchhhHHH
Confidence 9999999999998754 34468999999999999999999999999876 333333110
Q ss_pred ------CC--------CCCcccCChHHHHHhc---CCCccCcHHHHHHHHHHHHHHHcCC
Q 012176 403 ------NG--------DVPYTHANVSLAYKDF---GYKPTTDLAAGLRKFVKWYVSYYGI 445 (469)
Q Consensus 403 ------~~--------~~~~~~~d~~ka~~~L---G~~p~~~l~~~l~~~v~~~~~~~~~ 445 (469)
.+ -.....+|+++++++| |++.. .+++.+.++++||.++...
T Consensus 299 ~~~~~~~~~~~~~l~~~~~~~~f~~~~~~~~L~~~~~~~p-~~~~~~~~~~~~~~~~~~~ 357 (657)
T PRK07201 299 NAVATQLGIPPEVLDFVNYPTTFDSRETRAALKGSGIEVP-RLASYAPRLWDYWERHLDP 357 (657)
T ss_pred HHHHHhcCCCHHHHHhccCCCeeccHHHHHHhccCCcCCC-ChHHHHHHHHHHHHhcCCh
Confidence 00 0112467889999888 66655 6899999999999988653
|
|
| >TIGR01777 yfcH conserved hypothetical protein TIGR01777 | Back alignment and domain information |
|---|
Probab=99.98 E-value=5e-31 Score=258.32 Aligned_cols=279 Identities=19% Similarity=0.143 Sum_probs=199.7
Q ss_pred EEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCccEEEEc
Q 012176 121 VLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTHVLHL 200 (469)
Q Consensus 121 VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~d~Vih~ 200 (469)
||||||+||||+++++.|+++|++|++++|+........ ...+ .|+.+ +.+.+.+.++ |+|||+
T Consensus 1 vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~---------~~~~----~~~~~-~~~~~~~~~~--D~Vvh~ 64 (292)
T TIGR01777 1 ILITGGTGFIGRALTQRLTKDGHEVTILTRSPPAGANTK---------WEGY----KPWAP-LAESEALEGA--DAVINL 64 (292)
T ss_pred CEEEcccchhhHHHHHHHHHcCCEEEEEeCCCCCCCccc---------ceee----ecccc-cchhhhcCCC--CEEEEC
Confidence 699999999999999999999999999999765322110 0011 12222 3345566655 999999
Q ss_pred ccccCh--hhhccChHHHHHHHHHHHHHHHHHHHhcCCC-CeEEEEcCccccCCCCCCCCCCCCCCCCCCChHHHHHHHH
Q 012176 201 AAQAGV--RYAMQNPQSYVASNIAGFVNLLEVCKSVNPQ-PSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAG 277 (469)
Q Consensus 201 Aa~~~~--~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~-~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y~~sK~~~ 277 (469)
||.... .+....+..+++.|+.++.+++++|++.+.+ .+||+.|+.++||.....+++|+++. .+.+.|+..+...
T Consensus 65 a~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~~i~~S~~~~yg~~~~~~~~E~~~~-~~~~~~~~~~~~~ 143 (292)
T TIGR01777 65 AGEPIADKRWTEERKQEIRDSRIDTTRALVEAIAAAEQKPKVFISASAVGYYGTSEDRVFTEEDSP-AGDDFLAELCRDW 143 (292)
T ss_pred CCCCcccccCCHHHHHHHHhcccHHHHHHHHHHHhcCCCceEEEEeeeEEEeCCCCCCCcCcccCC-CCCChHHHHHHHH
Confidence 997432 1223345678899999999999999999874 36777787889997766788888754 4566777777778
Q ss_pred HHHHHHHHHHhCCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceEecccHHHHHHHHHHHhccCC
Q 012176 278 EEIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGATGSGG 357 (469)
Q Consensus 278 E~~~~~~~~~~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~~~~~~~~~~~ 357 (469)
|..+..+. +.+++++++||+.||||... ....++.......... + +++++.++|+|++|+|+++..+++++.
T Consensus 144 e~~~~~~~-~~~~~~~ilR~~~v~G~~~~---~~~~~~~~~~~~~~~~-~---g~~~~~~~~i~v~Dva~~i~~~l~~~~ 215 (292)
T TIGR01777 144 EEAAQAAE-DLGTRVVLLRTGIVLGPKGG---ALAKMLPPFRLGLGGP-L---GSGRQWFSWIHIEDLVQLILFALENAS 215 (292)
T ss_pred HHHhhhch-hcCCceEEEeeeeEECCCcc---hhHHHHHHHhcCcccc-c---CCCCcccccEeHHHHHHHHHHHhcCcc
Confidence 87766543 45899999999999999643 2333333222221111 2 568899999999999999999997642
Q ss_pred CCCCCCCceEEEeCCCCcccHHHHHHHHHHHhCCCccceeecCCC--------CC-CCCcccCChHHHHHhcCCCccC-c
Q 012176 358 KKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPR--------NG-DVPYTHANVSLAYKDFGYKPTT-D 427 (469)
Q Consensus 358 ~~~~~~~~~iyni~~~~~vt~~el~~~i~~~~g~~~~~~~~~~~~--------~~-~~~~~~~d~~ka~~~LG~~p~~-~ 427 (469)
..++||+++++++|+.|+++.+.+.+|.+.... .|... .. .......+++|++ ++||+|.+ +
T Consensus 216 ------~~g~~~~~~~~~~s~~di~~~i~~~~g~~~~~~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~ 287 (292)
T TIGR01777 216 ------ISGPVNATAPEPVRNKEFAKALARALHRPAFFP-VPAFVLRALLGEMADLLLKGQRVLPEKLL-EAGFQFQYPD 287 (292)
T ss_pred ------cCCceEecCCCccCHHHHHHHHHHHhCCCCcCc-CCHHHHHHHhchhhHHHhCCcccccHHHH-hcCCeeeCcC
Confidence 237999999999999999999999999764322 22110 01 0123456778886 59999998 4
Q ss_pred HHHHH
Q 012176 428 LAAGL 432 (469)
Q Consensus 428 l~~~l 432 (469)
++|+|
T Consensus 288 ~~~~~ 292 (292)
T TIGR01777 288 LDEAL 292 (292)
T ss_pred hhhcC
Confidence 88764
|
This model represents a clade of proteins of unknown function including the E. coli yfcH protein. |
| >PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-29 Score=258.69 Aligned_cols=246 Identities=17% Similarity=0.140 Sum_probs=194.0
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccC--
Q 012176 115 RPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV-- 192 (469)
Q Consensus 115 ~~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~-- 192 (469)
..++|+||||||+||||++++++|+++|++|++++|............ ......++++++.+|++|++.+.+++++.
T Consensus 57 ~~~~~kVLVtGatG~IG~~l~~~Ll~~G~~V~~l~R~~~~~~~~~~~~-~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~ 135 (390)
T PLN02657 57 EPKDVTVLVVGATGYIGKFVVRELVRRGYNVVAVAREKSGIRGKNGKE-DTKKELPGAEVVFGDVTDADSLRKVLFSEGD 135 (390)
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEEechhhccccchhh-HHhhhcCCceEEEeeCCCHHHHHHHHHHhCC
Confidence 356789999999999999999999999999999999654321110000 00112347999999999999999999864
Q ss_pred CccEEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcCccccCCCCCCCCCCCCCCCCCCChHHH
Q 012176 193 PFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAA 272 (469)
Q Consensus 193 ~~d~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y~~ 272 (469)
++|+||||++... ......+++|+.++.+++++|++.+++ +||++||.++|+ |...|..
T Consensus 136 ~~D~Vi~~aa~~~-----~~~~~~~~vn~~~~~~ll~aa~~~gv~-r~V~iSS~~v~~---------------p~~~~~~ 194 (390)
T PLN02657 136 PVDVVVSCLASRT-----GGVKDSWKIDYQATKNSLDAGREVGAK-HFVLLSAICVQK---------------PLLEFQR 194 (390)
T ss_pred CCcEEEECCccCC-----CCCccchhhHHHHHHHHHHHHHHcCCC-EEEEEeeccccC---------------cchHHHH
Confidence 4699999987522 122345788999999999999999987 999999988763 3456899
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceE-ecccHHHHHHHHHH
Q 012176 273 TKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVAR-DFTYIDDVVKGCVG 351 (469)
Q Consensus 273 sK~~~E~~~~~~~~~~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~v~v~Dva~~~~~ 351 (469)
+|...|+.+.. ...++++++|||+.+||+. ..++..+..|+++.++ ++++..+ ++||++|+|++++.
T Consensus 195 sK~~~E~~l~~--~~~gl~~tIlRp~~~~~~~-------~~~~~~~~~g~~~~~~---GdG~~~~~~~I~v~DlA~~i~~ 262 (390)
T PLN02657 195 AKLKFEAELQA--LDSDFTYSIVRPTAFFKSL-------GGQVEIVKDGGPYVMF---GDGKLCACKPISEADLASFIAD 262 (390)
T ss_pred HHHHHHHHHHh--ccCCCCEEEEccHHHhccc-------HHHHHhhccCCceEEe---cCCcccccCceeHHHHHHHHHH
Confidence 99999998876 2468999999999999752 2345667788888777 5666544 68999999999999
Q ss_pred HhccCCCCCCCCCceEEEeCCC-CcccHHHHHHHHHHHhCCCccceeec
Q 012176 352 ATGSGGKKRGPAQLRVYNLGNT-SPVPVGRLVSILENLLNTKAKKHVIR 399 (469)
Q Consensus 352 ~~~~~~~~~~~~~~~iyni~~~-~~vt~~el~~~i~~~~g~~~~~~~~~ 399 (469)
++.++ ...+++||++++ +.+|+.|+++.+.+.+|+++++..+|
T Consensus 263 ~~~~~-----~~~~~~~~Iggp~~~~S~~Eia~~l~~~lG~~~~~~~vp 306 (390)
T PLN02657 263 CVLDE-----SKINKVLPIGGPGKALTPLEQGEMLFRILGKEPKFFKVP 306 (390)
T ss_pred HHhCc-----cccCCEEEcCCCCcccCHHHHHHHHHHHhCCCCceEEcC
Confidence 98765 234599999986 68999999999999999987766655
|
|
| >COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.6e-29 Score=231.85 Aligned_cols=279 Identities=20% Similarity=0.214 Sum_probs=212.7
Q ss_pred EEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCccEEEEc
Q 012176 121 VLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTHVLHL 200 (469)
Q Consensus 121 VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~d~Vih~ 200 (469)
|+|||||||||++|+..|.+.||+|++++|+...... . ....++ ..+.+++.... ++|+|||+
T Consensus 1 IliTGgTGlIG~~L~~~L~~~gh~v~iltR~~~~~~~-------~--~~~~v~-------~~~~~~~~~~~-~~DavINL 63 (297)
T COG1090 1 ILITGGTGLIGRALTARLRKGGHQVTILTRRPPKASQ-------N--LHPNVT-------LWEGLADALTL-GIDAVINL 63 (297)
T ss_pred CeEeccccchhHHHHHHHHhCCCeEEEEEcCCcchhh-------h--cCcccc-------ccchhhhcccC-CCCEEEEC
Confidence 6899999999999999999999999999996642211 1 111111 12334444442 34999999
Q ss_pred ccc--cChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCC-eEEEEcCccccCCCCCCCCCCCCCCCCCCChHHHHHHHH
Q 012176 201 AAQ--AGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQP-SIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAG 277 (469)
Q Consensus 201 Aa~--~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~-~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y~~sK~~~ 277 (469)
||. ..-+|+.+..+.+.+..+..|..|+++..+...+| .+|..|..+.||...+..++|++++ ....-+.....+
T Consensus 64 AG~~I~~rrWt~~~K~~i~~SRi~~T~~L~e~I~~~~~~P~~~isaSAvGyYG~~~~~~~tE~~~~--g~~Fla~lc~~W 141 (297)
T COG1090 64 AGEPIAERRWTEKQKEEIRQSRINTTEKLVELIAASETKPKVLISASAVGYYGHSGDRVVTEESPP--GDDFLAQLCQDW 141 (297)
T ss_pred CCCccccccCCHHHHHHHHHHHhHHHHHHHHHHHhccCCCcEEEecceEEEecCCCceeeecCCCC--CCChHHHHHHHH
Confidence 996 33347888888999999999999999988655544 6888888899999999999999764 567788899999
Q ss_pred HHHHHHHHHHhCCcEEEEeecceecCCCCCCChHHHHHH--HHHcCCceEEEeeCCCCcceEecccHHHHHHHHHHHhcc
Q 012176 278 EEIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTK--DILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGATGS 355 (469)
Q Consensus 278 E~~~~~~~~~~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~~~~~~~~~ 355 (469)
|..+..... .|.+++++|.|.|.|+.+.. +..+.. ...-|.++ |+|.|+++|||++|+++++..++++
T Consensus 142 E~~a~~a~~-~gtRvvllRtGvVLs~~GGa---L~~m~~~fk~glGG~~------GsGrQ~~SWIhieD~v~~I~fll~~ 211 (297)
T COG1090 142 EEEALQAQQ-LGTRVVLLRTGVVLSPDGGA---LGKMLPLFKLGLGGKL------GSGRQWFSWIHIEDLVNAILFLLEN 211 (297)
T ss_pred HHHHhhhhh-cCceEEEEEEEEEecCCCcc---hhhhcchhhhccCCcc------CCCCceeeeeeHHHHHHHHHHHHhC
Confidence 988887654 49999999999999986652 222211 12234444 8999999999999999999999998
Q ss_pred CCCCCCCCCceEEEeCCCCcccHHHHHHHHHHHhCCCccceeecCCC------CCCCCcccCChHHHH----HhcCCCcc
Q 012176 356 GGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPR------NGDVPYTHANVSLAY----KDFGYKPT 425 (469)
Q Consensus 356 ~~~~~~~~~~~iyni~~~~~vt~~el~~~i~~~~g~~~~~~~~~~~~------~~~~~~~~~d~~ka~----~~LG~~p~ 425 (469)
.+. -+.||++.+.||+..+|.+.+.+.++++. ..+.|. .|+.....++.+++. ...||+.+
T Consensus 212 ~~l------sGp~N~taP~PV~~~~F~~al~r~l~RP~---~~~vP~~~~rl~LGe~a~~lL~gQrvlP~kl~~aGF~F~ 282 (297)
T COG1090 212 EQL------SGPFNLTAPNPVRNKEFAHALGRALHRPA---ILPVPSFALRLLLGEMADLLLGGQRVLPKKLEAAGFQFQ 282 (297)
T ss_pred cCC------CCcccccCCCcCcHHHHHHHHHHHhCCCc---cccCcHHHHHHHhhhhHHHHhccchhhHHHHHHCCCeee
Confidence 643 28999999999999999999999999876 333332 355555566665542 45799888
Q ss_pred C-cHHHHHHHHHH
Q 012176 426 T-DLAAGLRKFVK 437 (469)
Q Consensus 426 ~-~l~~~l~~~v~ 437 (469)
+ +++++|.+++.
T Consensus 283 y~dl~~AL~~il~ 295 (297)
T COG1090 283 YPDLEEALADILK 295 (297)
T ss_pred cCCHHHHHHHHHh
Confidence 6 59999988765
|
|
| >TIGR01746 Thioester-redct thioester reductase domain | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-27 Score=241.66 Aligned_cols=258 Identities=24% Similarity=0.272 Sum_probs=187.7
Q ss_pred EEEEEcCCChhHHHHHHHHHHCC--CcEEEEeCCCCCCChhHHHHHHHh----h-----ccCCeEEEEecCCCH------
Q 012176 120 TVLVTGAAGFVGSHCSLALKKRG--DGVLGLDNFNSYYDPSLKRARQKL----L-----QKHQVFIVEGDLNDA------ 182 (469)
Q Consensus 120 ~VlVtGatG~IG~~l~~~L~~~G--~~V~~~~r~~~~~~~~~~~~~~~~----~-----~~~~v~~v~~Dl~d~------ 182 (469)
+|+|||||||||++|+++|+++| ++|++++|..+... ...+..... + ...+++++.+|++++
T Consensus 1 ~vlvtGatG~lG~~l~~~L~~~g~~~~V~~l~R~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~gl~~ 79 (367)
T TIGR01746 1 TVLLTGATGFLGAYLLEELLRRSTQAKVICLVRAASEEH-AMERLREALRSYRLWQEDLARERIEVVAGDLSEPRLGLSD 79 (367)
T ss_pred CEEEeccchHHHHHHHHHHHhCCCCCEEEEEEccCCHHH-HHHHHHHHHHHhCCCCchhhhCCEEEEeCCcCcccCCcCH
Confidence 48999999999999999999999 67999999654211 111111100 0 014799999999754
Q ss_pred HHHHHhhccCCccEEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcCccccCCCCCCCCCCCCC
Q 012176 183 PLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHR 262 (469)
Q Consensus 183 ~~l~~~~~~~~~d~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~ 262 (469)
+.+..+.+++ |+|||||+..... .......+.|+.++.+++++|.+.+.+ +||++||.++|+.....+..|+++
T Consensus 80 ~~~~~~~~~~--d~vih~a~~~~~~---~~~~~~~~~nv~g~~~ll~~a~~~~~~-~~v~iSS~~v~~~~~~~~~~~~~~ 153 (367)
T TIGR01746 80 AEWERLAENV--DTIVHNGALVNWV---YPYSELRAANVLGTREVLRLAASGRAK-PLHYVSTISVLAAIDLSTVTEDDA 153 (367)
T ss_pred HHHHHHHhhC--CEEEeCCcEeccC---CcHHHHhhhhhHHHHHHHHHHhhCCCc-eEEEEccccccCCcCCCCcccccc
Confidence 4567777666 9999999975422 345677889999999999999998876 799999999998654333344332
Q ss_pred CC----CCCChHHHHHHHHHHHHHHHHHHhCCcEEEEeecceecCCCCC----CChHHHHHHHHHcCCceEEEeeCCCCc
Q 012176 263 TD----QPASLYAATKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRP----DMAYFFFTKDILQGKTIDVYKTQDDRE 334 (469)
Q Consensus 263 ~~----~p~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~Gp~~~~----~~~~~~~~~~~~~g~~~~~~~~~~~~~ 334 (469)
.. .+.+.|+.+|+++|.+++.+.+. |++++++|||.|||+.... ...+..++......+..+ ....
T Consensus 154 ~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~-g~~~~i~Rpg~v~G~~~~g~~~~~~~~~~~~~~~~~~~~~p-----~~~~ 227 (367)
T TIGR01746 154 IVTPPPGLAGGYAQSKWVAELLVREASDR-GLPVTIVRPGRILGNSYTGAINSSDILWRMVKGCLALGAYP-----DSPE 227 (367)
T ss_pred ccccccccCCChHHHHHHHHHHHHHHHhc-CCCEEEECCCceeecCCCCCCCchhHHHHHHHHHHHhCCCC-----CCCc
Confidence 21 23467999999999999987765 9999999999999973321 122333444433333221 2233
Q ss_pred ceEecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCCcccHHHHHHHHHHHhCCCcc
Q 012176 335 VARDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAK 394 (469)
Q Consensus 335 ~~~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~~vt~~el~~~i~~~~g~~~~ 394 (469)
...+++|++|++++++.++.++.. ...+++||+++++++++.|+++.+.+ +|.+..
T Consensus 228 ~~~~~~~vddva~ai~~~~~~~~~---~~~~~~~~v~~~~~~s~~e~~~~i~~-~g~~~~ 283 (367)
T TIGR01746 228 LTEDLTPVDYVARAIVALSSQPAA---SAGGPVFHVVNPEPVSLDEFLEWLER-AGYNLK 283 (367)
T ss_pred cccCcccHHHHHHHHHHHHhCCCc---ccCCceEEecCCCCCCHHHHHHHHHH-cCCCCC
Confidence 467899999999999999876531 01258999999999999999999999 887654
|
It has been suggested that a NADP-binding motif can be found in the N-terminal portion of this domain that may form a Rossman-type fold. |
| >PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-28 Score=235.15 Aligned_cols=239 Identities=26% Similarity=0.355 Sum_probs=184.8
Q ss_pred EEEEcCCChhHHHHHHHHHHCCC-cEEEEeCCCCCCChhHHHHHHHh---hccCCe----EEEEecCCCHHHHHHhhccC
Q 012176 121 VLVTGAAGFVGSHCSLALKKRGD-GVLGLDNFNSYYDPSLKRARQKL---LQKHQV----FIVEGDLNDAPLLTKLFDVV 192 (469)
Q Consensus 121 VlVtGatG~IG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~---~~~~~v----~~v~~Dl~d~~~l~~~~~~~ 192 (469)
||||||+|.||+.|+++|++.+. ++++++|++. .+-...... ....++ ..+.+|+.|.+.+..+++..
T Consensus 1 VLVTGa~GSIGseL~rql~~~~p~~lil~d~~E~----~l~~l~~~l~~~~~~~~v~~~~~~vigDvrd~~~l~~~~~~~ 76 (293)
T PF02719_consen 1 VLVTGAGGSIGSELVRQLLRYGPKKLILFDRDEN----KLYELERELRSRFPDPKVRFEIVPVIGDVRDKERLNRIFEEY 76 (293)
T ss_dssp EEEETTTSHHHHHHHHHHHCCB-SEEEEEES-HH----HHHHHHHHCHHHC--TTCEEEEE--CTSCCHHHHHHHHTT--
T ss_pred CEEEccccHHHHHHHHHHHhcCCCeEEEeCCChh----HHHHHHHHHhhcccccCcccccCceeecccCHHHHHHHHhhc
Confidence 79999999999999999999984 7999999554 222222222 122234 35689999999999999988
Q ss_pred CccEEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcCccccCCCCCCCCCCCCCCCCCCChHHH
Q 012176 193 PFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAA 272 (469)
Q Consensus 193 ~~d~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y~~ 272 (469)
+||+|||.||.-+++..+.+|.+.++.|+.||.|++++|.+++++ +||++||.-+. +|.+.||+
T Consensus 77 ~pdiVfHaAA~KhVpl~E~~p~eav~tNv~GT~nv~~aa~~~~v~-~~v~ISTDKAv---------------~PtnvmGa 140 (293)
T PF02719_consen 77 KPDIVFHAAALKHVPLMEDNPFEAVKTNVLGTQNVAEAAIEHGVE-RFVFISTDKAV---------------NPTNVMGA 140 (293)
T ss_dssp T-SEEEE------HHHHCCCHHHHHHHHCHHHHHHHHHHHHTT-S-EEEEEEECGCS---------------S--SHHHH
T ss_pred CCCEEEEChhcCCCChHHhCHHHHHHHHHHHHHHHHHHHHHcCCC-EEEEccccccC---------------CCCcHHHH
Confidence 999999999999999999999999999999999999999999998 99999996543 68899999
Q ss_pred HHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceEecccHHHHHHHH
Q 012176 273 TKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGC 349 (469)
Q Consensus 273 sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~~~ 349 (469)
+|+.+|.++..++... +.+++++|+|+|.|..+. .++.|.+++.+|+|+++. +.+..|-|+.+++.++.+
T Consensus 141 tKrlaE~l~~~~~~~~~~~~t~f~~VRFGNVlgS~GS---Vip~F~~Qi~~g~PlTvT----~p~mtRffmti~EAv~Lv 213 (293)
T PF02719_consen 141 TKRLAEKLVQAANQYSGNSDTKFSSVRFGNVLGSRGS---VIPLFKKQIKNGGPLTVT----DPDMTRFFMTIEEAVQLV 213 (293)
T ss_dssp HHHHHHHHHHHHCCTSSSS--EEEEEEE-EETTGTTS---CHHHHHHHHHTTSSEEEC----ETT-EEEEE-HHHHHHHH
T ss_pred HHHHHHHHHHHHhhhCCCCCcEEEEEEecceecCCCc---HHHHHHHHHHcCCcceeC----CCCcEEEEecHHHHHHHH
Confidence 9999999999998765 689999999999998666 789999999999999996 378899999999999999
Q ss_pred HHHhccCCCCCCCCCceEEEeCCCCcccHHHHHHHHHHHhCCC
Q 012176 350 VGATGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTK 392 (469)
Q Consensus 350 ~~~~~~~~~~~~~~~~~iyni~~~~~vt~~el~~~i~~~~g~~ 392 (469)
+.+.... ..|++|-+--|+++.+.|+++.+.+..|.+
T Consensus 214 l~a~~~~------~~geifvl~mg~~v~I~dlA~~~i~~~g~~ 250 (293)
T PF02719_consen 214 LQAAALA------KGGEIFVLDMGEPVKILDLAEAMIELSGLE 250 (293)
T ss_dssp HHHHHH--------TTEEEEE---TCEECCCHHHHHHHHTT-E
T ss_pred HHHHhhC------CCCcEEEecCCCCcCHHHHHHHHHhhcccc
Confidence 9997654 234899888889999999999999999854
|
The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A. |
| >COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.8e-27 Score=238.13 Aligned_cols=245 Identities=22% Similarity=0.273 Sum_probs=211.9
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCC-cEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCc
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGD-GVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPF 194 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~ 194 (469)
..+|+||||||+|-||+.+++++++.+. ++++++|++...... ............+..+-||+.|.+.+++++++.++
T Consensus 248 ~~gK~vLVTGagGSiGsel~~qil~~~p~~i~l~~~~E~~~~~i-~~el~~~~~~~~~~~~igdVrD~~~~~~~~~~~kv 326 (588)
T COG1086 248 LTGKTVLVTGGGGSIGSELCRQILKFNPKEIILFSRDEYKLYLI-DMELREKFPELKLRFYIGDVRDRDRVERAMEGHKV 326 (588)
T ss_pred cCCCEEEEeCCCCcHHHHHHHHHHhcCCCEEEEecCchHHHHHH-HHHHHhhCCCcceEEEecccccHHHHHHHHhcCCC
Confidence 5789999999999999999999999875 788888865432221 11122222236899999999999999999999889
Q ss_pred cEEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcCccccCCCCCCCCCCCCCCCCCCChHHHHH
Q 012176 195 THVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATK 274 (469)
Q Consensus 195 d~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y~~sK 274 (469)
|+|+|.||.-+++-.+.+|.+.++.|+.||.|++++|.+.|++ +||.+||.-+. +|.+.||++|
T Consensus 327 d~VfHAAA~KHVPl~E~nP~Eai~tNV~GT~nv~~aa~~~~V~-~~V~iSTDKAV---------------~PtNvmGaTK 390 (588)
T COG1086 327 DIVFHAAALKHVPLVEYNPEEAIKTNVLGTENVAEAAIKNGVK-KFVLISTDKAV---------------NPTNVMGATK 390 (588)
T ss_pred ceEEEhhhhccCcchhcCHHHHHHHhhHhHHHHHHHHHHhCCC-EEEEEecCccc---------------CCchHhhHHH
Confidence 9999999999999999999999999999999999999999998 99999985432 6889999999
Q ss_pred HHHHHHHHHHHHHh---CCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceEecccHHHHHHHHHH
Q 012176 275 KAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVG 351 (469)
Q Consensus 275 ~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~~~~~ 351 (469)
+.+|.++..++.+. +.+++++|+|+|.|..+. .++-|.+++.+|+|+++. +.+-.|-|..+.|.++.++.
T Consensus 391 r~aE~~~~a~~~~~~~~~T~f~~VRFGNVlGSrGS---ViPlFk~QI~~GgplTvT----dp~mtRyfMTI~EAv~LVlq 463 (588)
T COG1086 391 RLAEKLFQAANRNVSGTGTRFCVVRFGNVLGSRGS---VIPLFKKQIAEGGPLTVT----DPDMTRFFMTIPEAVQLVLQ 463 (588)
T ss_pred HHHHHHHHHHhhccCCCCcEEEEEEecceecCCCC---CHHHHHHHHHcCCCcccc----CCCceeEEEEHHHHHHHHHH
Confidence 99999999998743 389999999999998776 788999999999999986 57889999999999999999
Q ss_pred HhccCCCCCCCCCceEEEeCCCCcccHHHHHHHHHHHhC
Q 012176 352 ATGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLN 390 (469)
Q Consensus 352 ~~~~~~~~~~~~~~~iyni~~~~~vt~~el~~~i~~~~g 390 (469)
+.... ..|++|-+--|+++...|+++.+.+..|
T Consensus 464 A~a~~------~gGeifvldMGepvkI~dLAk~mi~l~g 496 (588)
T COG1086 464 AGAIA------KGGEIFVLDMGEPVKIIDLAKAMIELAG 496 (588)
T ss_pred HHhhc------CCCcEEEEcCCCCeEHHHHHHHHHHHhC
Confidence 97653 2359998888999999999999999998
|
|
| >KOG1372 consensus GDP-mannose 4,6 dehydratase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.6e-27 Score=215.64 Aligned_cols=320 Identities=20% Similarity=0.218 Sum_probs=253.2
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHH-H--hhccCCeEEEEecCCCHHHHHHhhccC
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQ-K--LLQKHQVFIVEGDLNDAPLLTKLFDVV 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~-~--~~~~~~v~~v~~Dl~d~~~l~~~~~~~ 192 (469)
...|..||||-||.=|++|++.|+..|++|.++.|..+..........- . ...........||++|...+.+++...
T Consensus 26 r~rkvALITGItGQDGSYLaEfLL~KgYeVHGiiRRsSsFNT~RIeHlY~nP~~h~~~~mkLHYgDmTDss~L~k~I~~i 105 (376)
T KOG1372|consen 26 RPRKVALITGITGQDGSYLAEFLLSKGYEVHGIIRRSSSFNTARIEHLYSNPHTHNGASMKLHYGDMTDSSCLIKLISTI 105 (376)
T ss_pred ccceEEEEecccCCCchHHHHHHHhCCceeeEEEeeccccchhhhhhhhcCchhcccceeEEeeccccchHHHHHHHhcc
Confidence 3457899999999999999999999999999999988766554333221 1 112346889999999999999999999
Q ss_pred CccEEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCC--CeEEEEcCccccCCCCCCCCCCCCCCCCCCChH
Q 012176 193 PFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQ--PSIVWASSSSVYGLNTQVPFSESHRTDQPASLY 270 (469)
Q Consensus 193 ~~d~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~--~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y 270 (469)
+|+-|+|+|++.++..+.+-++...++...|+.+|+++.+..+.. -+|...||+..||...+.|.+|..|. .|.++|
T Consensus 106 kPtEiYnLaAQSHVkvSFdlpeYTAeVdavGtLRlLdAi~~c~l~~~VrfYQAstSElyGkv~e~PQsE~TPF-yPRSPY 184 (376)
T KOG1372|consen 106 KPTEVYNLAAQSHVKVSFDLPEYTAEVDAVGTLRLLDAIRACRLTEKVRFYQASTSELYGKVQEIPQSETTPF-YPRSPY 184 (376)
T ss_pred CchhhhhhhhhcceEEEeecccceeeccchhhhhHHHHHHhcCcccceeEEecccHhhcccccCCCcccCCCC-CCCChh
Confidence 999999999998888888888888899999999999998876543 28999999999999999999999987 899999
Q ss_pred HHHHHHHHHHHHHHHHHhCCcEEEEeecceecCCCCCCChHHHHHHHH---HcCCceEEEeeCCCCcceEecccHHHHHH
Q 012176 271 AATKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTKDI---LQGKTIDVYKTQDDREVARDFTYIDDVVK 347 (469)
Q Consensus 271 ~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~---~~g~~~~~~~~~~~~~~~~~~v~v~Dva~ 347 (469)
+++|..+-.++-.|++.|++-.+---.++--.|+...+...-.+.+.+ .-|+.-.+.. |.-+..+||-|..|.++
T Consensus 185 a~aKmy~~WivvNyREAYnmfAcNGILFNHESPRRGenFVTRKItRsvakI~~gqqe~~~L--GNL~a~RDWGhA~dYVE 262 (376)
T KOG1372|consen 185 AAAKMYGYWIVVNYREAYNMFACNGILFNHESPRRGENFVTRKITRSVAKISLGQQEKIEL--GNLSALRDWGHAGDYVE 262 (376)
T ss_pred HHhhhhheEEEEEhHHhhcceeeccEeecCCCCccccchhhHHHHHHHHHhhhcceeeEEe--cchhhhcccchhHHHHH
Confidence 999999999999999988875543334444456555443333333332 2244333332 66788999999999999
Q ss_pred HHHHHhccCCCCCCCCCceEEEeCCCCcccHHHHHHHHHHHhCCCccceeecCC-------------------CCCCCCc
Q 012176 348 GCVGATGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMP-------------------RNGDVPY 408 (469)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~iyni~~~~~vt~~el~~~i~~~~g~~~~~~~~~~~-------------------~~~~~~~ 408 (469)
+++.+++++.. +-|-|+.++..+++|+++......|....+.-.... ++.++..
T Consensus 263 AMW~mLQ~d~P-------dDfViATge~hsVrEF~~~aF~~ig~~l~Weg~gv~~~~~n~~g~v~V~v~~kYyRPtEVd~ 335 (376)
T KOG1372|consen 263 AMWLMLQQDSP-------DDFVIATGEQHSVREFCNLAFAEIGEVLNWEGEGVDEVGKNDDGVVRVKVDPKYYRPTEVDT 335 (376)
T ss_pred HHHHHHhcCCC-------CceEEecCCcccHHHHHHHHHHhhCcEEeecccccccccccCCceEEEEecccccCcchhhh
Confidence 99999998753 778899999999999999999999976555422211 2344555
Q ss_pred ccCChHHHHHhcCCCccCcHHHHHHHHHHHHHHHcCC
Q 012176 409 THANVSLAYKDFGYKPTTDLAAGLRKFVKWYVSYYGI 445 (469)
Q Consensus 409 ~~~d~~ka~~~LG~~p~~~l~~~l~~~v~~~~~~~~~ 445 (469)
..-|.+|+++.|||+|+..+++.+++|+..-.+.++.
T Consensus 336 LqGdasKAk~~LgW~pkv~f~eLVkeMv~~DieLm~~ 372 (376)
T KOG1372|consen 336 LQGDASKAKKTLGWKPKVTFPELVKEMVASDIELMKR 372 (376)
T ss_pred hcCChHHHHHhhCCCCccCHHHHHHHHHHhHHHHHhh
Confidence 6779999999999999999999999999866655543
|
|
| >PLN02260 probable rhamnose biosynthetic enzyme | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.7e-27 Score=255.33 Aligned_cols=266 Identities=18% Similarity=0.243 Sum_probs=201.4
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCcc
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFT 195 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~d 195 (469)
...|+||||||+||||++|++.|.++|++|... .+|++|.+.+.++++..++|
T Consensus 378 ~~~mkiLVtGa~G~iG~~l~~~L~~~g~~v~~~---------------------------~~~l~d~~~v~~~i~~~~pd 430 (668)
T PLN02260 378 KPSLKFLIYGRTGWIGGLLGKLCEKQGIAYEYG---------------------------KGRLEDRSSLLADIRNVKPT 430 (668)
T ss_pred CCCceEEEECCCchHHHHHHHHHHhCCCeEEee---------------------------ccccccHHHHHHHHHhhCCC
Confidence 456899999999999999999999999987421 14688889999999888899
Q ss_pred EEEEcccccC---hhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcCccccCCC------CCCCCCCCCCCCCC
Q 012176 196 HVLHLAAQAG---VRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLN------TQVPFSESHRTDQP 266 (469)
Q Consensus 196 ~Vih~Aa~~~---~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS~~vyg~~------~~~~~~E~~~~~~p 266 (469)
+|||+||..+ .++++.++...+++|+.++.+|+++|++.|+ ++|++||..||+.. ...|++|++++..+
T Consensus 431 ~Vih~Aa~~~~~~~~~~~~~~~~~~~~N~~gt~~l~~a~~~~g~--~~v~~Ss~~v~~~~~~~~~~~~~p~~E~~~~~~~ 508 (668)
T PLN02260 431 HVFNAAGVTGRPNVDWCESHKVETIRANVVGTLTLADVCRENGL--LMMNFATGCIFEYDAKHPEGSGIGFKEEDKPNFT 508 (668)
T ss_pred EEEECCcccCCCCCChHHhCHHHHHHHHhHHHHHHHHHHHHcCC--eEEEEcccceecCCcccccccCCCCCcCCCCCCC
Confidence 9999999863 4466788999999999999999999999987 57888998998642 23478898877445
Q ss_pred CChHHHHHHHHHHHHHHHHHHhCCcEEEEeecceecCCCCCCChHHHHHHHHHcCCc-eEEEeeCCCCcceEecccHHHH
Q 012176 267 ASLYAATKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKT-IDVYKTQDDREVARDFTYIDDV 345 (469)
Q Consensus 267 ~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~v~v~Dv 345 (469)
.+.|+.+|+++|.+++.+. ++.++|+.++||.+... ...|+..+++... +.++ .+..+++|+
T Consensus 509 ~~~Yg~sK~~~E~~~~~~~-----~~~~~r~~~~~~~~~~~---~~nfv~~~~~~~~~~~vp---------~~~~~~~~~ 571 (668)
T PLN02260 509 GSFYSKTKAMVEELLREYD-----NVCTLRVRMPISSDLSN---PRNFITKISRYNKVVNIP---------NSMTVLDEL 571 (668)
T ss_pred CChhhHHHHHHHHHHHhhh-----hheEEEEEEecccCCCC---ccHHHHHHhccceeeccC---------CCceehhhH
Confidence 6899999999999998874 35678888888643211 1245566655543 2221 346778999
Q ss_pred HHHHHHHhccCCCCCCCCCceEEEeCCCCcccHHHHHHHHHHHhCCCccceeec---CC--CCC-CCCcccCChHHHHHh
Q 012176 346 VKGCVGATGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIR---MP--RNG-DVPYTHANVSLAYKD 419 (469)
Q Consensus 346 a~~~~~~~~~~~~~~~~~~~~iyni~~~~~vt~~el~~~i~~~~g~~~~~~~~~---~~--~~~-~~~~~~~d~~ka~~~ 419 (469)
+.+++.++.... +++||++++..+|+.|+++.+.+.++....+..+. .+ ... ...+ .+|++|+++.
T Consensus 572 ~~~~~~l~~~~~-------~giyni~~~~~~s~~e~a~~i~~~~~~~~~~~~~~~~~~~~~~~a~rp~~-~l~~~k~~~~ 643 (668)
T PLN02260 572 LPISIEMAKRNL-------RGIWNFTNPGVVSHNEILEMYKDYIDPGFKWSNFTLEEQAKVIVAPRSNN-EMDASKLKKE 643 (668)
T ss_pred HHHHHHHHHhCC-------CceEEecCCCcCcHHHHHHHHHHhcCCcccccccCHHHhhhHhhCCCccc-cccHHHHHHh
Confidence 998888876321 38999999999999999999999885221111111 11 111 2334 7999999998
Q ss_pred cCCCccCcHHHHHHHHHH
Q 012176 420 FGYKPTTDLAAGLRKFVK 437 (469)
Q Consensus 420 LG~~p~~~l~~~l~~~v~ 437 (469)
+|. +. +|+++|.+++.
T Consensus 644 ~~~-~~-~~~~~l~~~~~ 659 (668)
T PLN02260 644 FPE-LL-SIKESLIKYVF 659 (668)
T ss_pred Ccc-cc-chHHHHHHHHh
Confidence 998 55 89999998875
|
|
| >PLN02503 fatty acyl-CoA reductase 2 | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.5e-26 Score=241.98 Aligned_cols=266 Identities=17% Similarity=0.201 Sum_probs=190.7
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCC---cEEEEeCCCCCCChhHHHHHHHhh-------------------ccCCe
Q 012176 115 RPNGMTVLVTGAAGFVGSHCSLALKKRGD---GVLGLDNFNSYYDPSLKRARQKLL-------------------QKHQV 172 (469)
Q Consensus 115 ~~~~~~VlVtGatG~IG~~l~~~L~~~G~---~V~~~~r~~~~~~~~~~~~~~~~~-------------------~~~~v 172 (469)
..++|+|||||||||||.+|+++|++.+. +|+++.|.+..... ..+...... ...++
T Consensus 116 f~~~k~VlVTGaTGFLGk~LlekLLr~~~~v~kIy~LvR~k~~~~a-~eRl~~~l~~~~lf~~l~~~~g~~~~~~~~~Ki 194 (605)
T PLN02503 116 FLRGKNFLITGATGFLAKVLIEKILRTNPDVGKIYLLIKAKDKEAA-IERLKNEVIDAELFKCLQETHGKSYQSFMLSKL 194 (605)
T ss_pred hhcCCEEEEcCCchHHHHHHHHHHHHhCCCCcEEEEEEecCCchhH-HHHHHHHHhhhhhHHHHHHhcCccccccccccE
Confidence 46789999999999999999999998764 67999997653321 111111110 12479
Q ss_pred EEEEecCCCH------HHHHHhhccCCccEEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcCc
Q 012176 173 FIVEGDLNDA------PLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSS 246 (469)
Q Consensus 173 ~~v~~Dl~d~------~~l~~~~~~~~~d~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS~ 246 (469)
+++.||++++ +..+.+.+++ |+|||+|+..... .+++..+++|+.|+.+++++|++.+..++|||+||+
T Consensus 195 ~~v~GDl~d~~LGLs~~~~~~L~~~v--DiVIH~AA~v~f~---~~~~~a~~vNV~GT~nLLelA~~~~~lk~fV~vSTa 269 (605)
T PLN02503 195 VPVVGNVCESNLGLEPDLADEIAKEV--DVIINSAANTTFD---ERYDVAIDINTRGPCHLMSFAKKCKKLKLFLQVSTA 269 (605)
T ss_pred EEEEeeCCCcccCCCHHHHHHHHhcC--CEEEECccccccc---cCHHHHHHHHHHHHHHHHHHHHHcCCCCeEEEccCc
Confidence 9999999987 4566666665 9999999986533 567889999999999999999987544489999999
Q ss_pred cccCCCCCCCCCCCCCC----------------------------------------------------------CCCCC
Q 012176 247 SVYGLNTQVPFSESHRT----------------------------------------------------------DQPAS 268 (469)
Q Consensus 247 ~vyg~~~~~~~~E~~~~----------------------------------------------------------~~p~~ 268 (469)
.|||...+ .+.|+..+ ..-.+
T Consensus 270 yVyG~~~G-~i~E~~y~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~~~~l~~~g~~~~~~~~~pN 348 (605)
T PLN02503 270 YVNGQRQG-RIMEKPFRMGDCIARELGISNSLPHNRPALDIEAEIKLALDSKRHGFQSNSFAQKMKDLGLERAKLYGWQD 348 (605)
T ss_pred eeecCCCC-eeeeeecCcccccccccccccccccccccCCHHHHHHHHHHhhhcccchHHHHHHhhhcccchhhhCCCCC
Confidence 99986532 22221110 01126
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCcEEEEeecceecCCCCCC-------ChHHHHHHHHHcCCceEEEeeCCCCcceEeccc
Q 012176 269 LYAATKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPD-------MAYFFFTKDILQGKTIDVYKTQDDREVARDFTY 341 (469)
Q Consensus 269 ~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~Gp~~~~~-------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~ 341 (469)
.|..+|..+|+++.+... +++++|+||+.|.+-+..|- .....++..+.+|....++ ++++...|+|+
T Consensus 349 tYt~TK~lAE~lV~~~~~--~LPv~IvRPsiV~st~~eP~pGw~d~~~~~~p~~~~~g~G~lr~~~---~~~~~~~DiVP 423 (605)
T PLN02503 349 TYVFTKAMGEMVINSMRG--DIPVVIIRPSVIESTWKDPFPGWMEGNRMMDPIVLYYGKGQLTGFL---ADPNGVLDVVP 423 (605)
T ss_pred hHHHHHHHHHHHHHHhcC--CCCEEEEcCCEecccccCCccccccCccccchhhhheeccceeEEE---eCCCeeEeEEe
Confidence 799999999999997664 89999999999954322211 1111111122244333344 77999999999
Q ss_pred HHHHHHHHHHHhccCCCCCCCCCceEEEeCCC--CcccHHHHHHHHHHHhCCCc
Q 012176 342 IDDVVKGCVGATGSGGKKRGPAQLRVYNLGNT--SPVPVGRLVSILENLLNTKA 393 (469)
Q Consensus 342 v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~--~~vt~~el~~~i~~~~g~~~ 393 (469)
||.|+++++.++..... .....+++||++++ +|++|.++++.+.+.+...+
T Consensus 424 VD~vvna~i~a~a~~~~-~~~~~~~vYn~ts~~~nP~t~~~~~~~~~~~~~~~P 476 (605)
T PLN02503 424 ADMVVNATLAAMAKHGG-AAKPEINVYQIASSVVNPLVFQDLARLLYEHYKSSP 476 (605)
T ss_pred ecHHHHHHHHHHHhhhc-ccCCCCCEEEeCCCCCCCeEHHHHHHHHHHHHhhCC
Confidence 99999999998443211 11234699999988 89999999999998886543
|
|
| >PRK12320 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.5e-25 Score=234.30 Aligned_cols=236 Identities=19% Similarity=0.161 Sum_probs=173.6
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCccEEE
Q 012176 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTHVL 198 (469)
Q Consensus 119 ~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~d~Vi 198 (469)
|+||||||+||||++|+++|+++|++|++++|.... ....+++++.+|++|.. +.+++.++ |+||
T Consensus 1 MkILVTGAaGFIGs~La~~Ll~~G~~Vi~ldr~~~~------------~~~~~ve~v~~Dl~d~~-l~~al~~~--D~VI 65 (699)
T PRK12320 1 MQILVTDATGAVGRSVTRQLIAAGHTVSGIAQHPHD------------ALDPRVDYVCASLRNPV-LQELAGEA--DAVI 65 (699)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCEEEEEeCChhh------------cccCCceEEEccCCCHH-HHHHhcCC--CEEE
Confidence 589999999999999999999999999999984321 11247889999999985 77888766 9999
Q ss_pred EcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcCccccCCCCCCCCCCCCCCCCCCChHHHHHHHHH
Q 012176 199 HLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGE 278 (469)
Q Consensus 199 h~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y~~sK~~~E 278 (469)
|+|+... .. ...+|+.++.+++++|++.|+ ++||+||. +|.. ..|. .+|
T Consensus 66 HLAa~~~-----~~---~~~vNv~Gt~nLleAA~~~Gv--RiV~~SS~--~G~~---------------~~~~----~aE 114 (699)
T PRK12320 66 HLAPVDT-----SA---PGGVGITGLAHVANAAARAGA--RLLFVSQA--AGRP---------------ELYR----QAE 114 (699)
T ss_pred EcCccCc-----cc---hhhHHHHHHHHHHHHHHHcCC--eEEEEECC--CCCC---------------cccc----HHH
Confidence 9998632 11 225799999999999999986 79999985 3311 0122 366
Q ss_pred HHHHHHHHHhCCcEEEEeecceecCCCCCC--ChHHHHHHHHHcCCceEEEeeCCCCcceEecccHHHHHHHHHHHhccC
Q 012176 279 EIAHTYNHIYGLALTGLRFFTVYGPWGRPD--MAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGATGSG 356 (469)
Q Consensus 279 ~~~~~~~~~~gi~~~ilRp~~v~Gp~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~~~~~~~~~~ 356 (469)
.++.. ++++++++|++++|||+.... .++..++.....++++ .++||+|++++++.+++.+
T Consensus 115 ~ll~~----~~~p~~ILR~~nVYGp~~~~~~~r~I~~~l~~~~~~~pI-------------~vIyVdDvv~alv~al~~~ 177 (699)
T PRK12320 115 TLVST----GWAPSLVIRIAPPVGRQLDWMVCRTVATLLRSKVSARPI-------------RVLHLDDLVRFLVLALNTD 177 (699)
T ss_pred HHHHh----cCCCEEEEeCceecCCCCcccHhHHHHHHHHHHHcCCce-------------EEEEHHHHHHHHHHHHhCC
Confidence 66544 579999999999999965432 2344555444444443 3489999999999998753
Q ss_pred CCCCCCCCceEEEeCCCCcccHHHHHHHHHHHhCCCccceeecCCCCCCCCcccCChHHHHHhcCCCccCcHHH
Q 012176 357 GKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRNGDVPYTHANVSLAYKDFGYKPTTDLAA 430 (469)
Q Consensus 357 ~~~~~~~~~~iyni~~~~~vt~~el~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~~l~~ 430 (469)
. .++|||++++.+|+.|+++.+...... ..+. ...+......|...++..++|.|+.+|+.
T Consensus 178 ~-------~GiyNIG~~~~~Si~el~~~i~~~~p~-~~~~-----~~~~~~~~~pdi~~a~~~~~w~~~~~~~~ 238 (699)
T PRK12320 178 R-------NGVVDLATPDTTNVVTAWRLLRSVDPH-LRTR-----RVRSWEQLIPEVDIAAVQEDWNFEFGWQA 238 (699)
T ss_pred C-------CCEEEEeCCCeeEHHHHHHHHHHhCCC-cccc-----ccccHHHhCCCCchhhhhcCCCCcchHHH
Confidence 1 269999999999999999998776221 1111 12233345677788888899999987653
|
|
| >PF07993 NAD_binding_4: Male sterility protein; InterPro: IPR013120 This family represents the C-terminal NAD-binding region of the male sterility protein from Arabidopsis and Drosophila | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.1e-25 Score=215.93 Aligned_cols=216 Identities=23% Similarity=0.251 Sum_probs=131.8
Q ss_pred EEcCCChhHHHHHHHHHHCCC--cEEEEeCCCCCCChhHHHHHHH--------h---hccCCeEEEEecCCCH------H
Q 012176 123 VTGAAGFVGSHCSLALKKRGD--GVLGLDNFNSYYDPSLKRARQK--------L---LQKHQVFIVEGDLNDA------P 183 (469)
Q Consensus 123 VtGatG~IG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~--------~---~~~~~v~~v~~Dl~d~------~ 183 (469)
|||||||||.+|+++|++++. +|+++.|...... ..++.... . ....+++++.||++++ +
T Consensus 1 lTGaTGflG~~ll~~Ll~~~~~~~I~cLvR~~~~~~-~~~rl~~~l~~~~~~~~~~~~~~~ri~~v~GDl~~~~lGL~~~ 79 (249)
T PF07993_consen 1 LTGATGFLGSHLLEELLRQPPDVKIYCLVRASSSQS-ALERLKDALKEYGLWDDLDKEALSRIEVVEGDLSQPNLGLSDE 79 (249)
T ss_dssp EE-TTSHHHHHHHHHHHHHS-TTEEEEEE-SSSHHH-HHHHHHGGG-SS-HHHHH-HHHTTTEEEEE--TTSGGGG--HH
T ss_pred CcCCCcHHHHHHHHHHHcCCCCcEEEEEEeCccccc-chhhhhhhcccccchhhhhhhhhccEEEEeccccccccCCChH
Confidence 799999999999999999987 8999999664211 11222111 0 1256999999999875 5
Q ss_pred HHHHhhccCCccEEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcCccccCCCCCCCCC-----
Q 012176 184 LLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFS----- 258 (469)
Q Consensus 184 ~l~~~~~~~~~d~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS~~vyg~~~~~~~~----- 258 (469)
.++.+.+.+ |+||||||..... .+.++..+.|+.|++++++.|.+...+ +|+|+||+.+.+.... ...
T Consensus 80 ~~~~L~~~v--~~IiH~Aa~v~~~---~~~~~~~~~NV~gt~~ll~la~~~~~~-~~~~iSTa~v~~~~~~-~~~~~~~~ 152 (249)
T PF07993_consen 80 DYQELAEEV--DVIIHCAASVNFN---APYSELRAVNVDGTRNLLRLAAQGKRK-RFHYISTAYVAGSRPG-TIEEKVYP 152 (249)
T ss_dssp HHHHHHHH----EEEE--SS-SBS----S--EEHHHHHHHHHHHHHHHTSSS----EEEEEEGGGTTS-TT-T--SSS-H
T ss_pred Hhhcccccc--ceeeecchhhhhc---ccchhhhhhHHHHHHHHHHHHHhccCc-ceEEeccccccCCCCC-cccccccc
Confidence 678888888 9999999986654 355567899999999999999977766 9999999555544332 221
Q ss_pred --CC--CCCCCCCChHHHHHHHHHHHHHHHHHHhCCcEEEEeecceecCCC----CCCChHHHHH-HHHHcCCceEEEee
Q 012176 259 --ES--HRTDQPASLYAATKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWG----RPDMAYFFFT-KDILQGKTIDVYKT 329 (469)
Q Consensus 259 --E~--~~~~~p~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~Gp~~----~~~~~~~~~~-~~~~~g~~~~~~~~ 329 (469)
+. +......+.|.+||+++|.+++++.++.|++++|+|||.|+|... +.......++ ..+..|....+.
T Consensus 153 ~~~~~~~~~~~~~~gY~~SK~~aE~~l~~a~~~~g~p~~I~Rp~~i~g~~~~G~~~~~~~~~~~~~~~~~~~~~p~~~-- 230 (249)
T PF07993_consen 153 EEEDDLDPPQGFPNGYEQSKWVAERLLREAAQRHGLPVTIYRPGIIVGDSRTGWWNSDDFFPYLLRSCIALGAFPDLP-- 230 (249)
T ss_dssp HH--EEE--TTSEE-HHHHHHHHHHHHHHHHHHH---EEEEEE-EEE-SSSSS---TTBHHHHHHHHHHHH-EEES-S--
T ss_pred cccccchhhccCCccHHHHHHHHHHHHHHHHhcCCceEEEEecCcccccCCCceeeccchHHHHHHHHHHcCCccccc--
Confidence 11 112244568999999999999999988899999999999999321 1223233334 334444333333
Q ss_pred CCCCcceEecccHHHHHHHH
Q 012176 330 QDDREVARDFTYIDDVVKGC 349 (469)
Q Consensus 330 ~~~~~~~~~~v~v~Dva~~~ 349 (469)
++.+...|+++||.+|++|
T Consensus 231 -~~~~~~~d~vPVD~va~aI 249 (249)
T PF07993_consen 231 -GDPDARLDLVPVDYVARAI 249 (249)
T ss_dssp -B---TT--EEEHHHHHHHH
T ss_pred -CCCCceEeEECHHHHHhhC
Confidence 4456679999999999986
|
A sequence-related jojoba acyl CoA reductase is also included.; PDB: 4DQV_A. |
| >TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.4e-24 Score=209.71 Aligned_cols=218 Identities=17% Similarity=0.119 Sum_probs=160.9
Q ss_pred EEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhcc----CC-c
Q 012176 120 TVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDV----VP-F 194 (469)
Q Consensus 120 ~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~----~~-~ 194 (469)
+|+||||||+||++++++|+++|++|++++|+.+.. ...+++.+.+|+.|++.+.+++++ .+ +
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~g~~V~~~~R~~~~~------------~~~~~~~~~~d~~d~~~l~~a~~~~~~~~g~~ 68 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAASVPFLVASRSSSSS------------AGPNEKHVKFDWLDEDTWDNPFSSDDGMEPEI 68 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhCCCcEEEEeCCCccc------------cCCCCccccccCCCHHHHHHHHhcccCcCCce
Confidence 489999999999999999999999999999965421 123677889999999999999932 12 4
Q ss_pred cEEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcCccccCCCCCCCCCCCCCCCCCCChHHHHH
Q 012176 195 THVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATK 274 (469)
Q Consensus 195 d~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y~~sK 274 (469)
|.|+|+++... . ......+++++|+++|++ |||++||..++... ..+
T Consensus 69 d~v~~~~~~~~-----~--------~~~~~~~~i~aa~~~gv~-~~V~~Ss~~~~~~~-------------------~~~ 115 (285)
T TIGR03649 69 SAVYLVAPPIP-----D--------LAPPMIKFIDFARSKGVR-RFVLLSASIIEKGG-------------------PAM 115 (285)
T ss_pred eEEEEeCCCCC-----C--------hhHHHHHHHHHHHHcCCC-EEEEeeccccCCCC-------------------chH
Confidence 99999987421 0 123567899999999997 99999986653210 012
Q ss_pred HHHHHHHHHHHHHhCCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceEecccHHHHHHHHHHHhc
Q 012176 275 KAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGATG 354 (469)
Q Consensus 275 ~~~E~~~~~~~~~~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~~~~~~~~ 354 (469)
...|+++++. .|++++++||+.+|+..... .+...+.....+. . +.++..++|++++|+|++++.++.
T Consensus 116 ~~~~~~l~~~---~gi~~tilRp~~f~~~~~~~-----~~~~~~~~~~~~~-~---~~g~~~~~~v~~~Dva~~~~~~l~ 183 (285)
T TIGR03649 116 GQVHAHLDSL---GGVEYTVLRPTWFMENFSEE-----FHVEAIRKENKIY-S---ATGDGKIPFVSADDIARVAYRALT 183 (285)
T ss_pred HHHHHHHHhc---cCCCEEEEeccHHhhhhccc-----ccccccccCCeEE-e---cCCCCccCcccHHHHHHHHHHHhc
Confidence 2344444331 48999999999988653211 1112233333332 2 346788999999999999999998
Q ss_pred cCCCCCCCCCceEEEeCCCCcccHHHHHHHHHHHhCCCccceeec
Q 012176 355 SGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIR 399 (469)
Q Consensus 355 ~~~~~~~~~~~~iyni~~~~~vt~~el~~~i~~~~g~~~~~~~~~ 399 (469)
++. ..+++|++++++.+|+.|+++.+.+.+|++.....++
T Consensus 184 ~~~-----~~~~~~~l~g~~~~s~~eia~~l~~~~g~~v~~~~~~ 223 (285)
T TIGR03649 184 DKV-----APNTDYVVLGPELLTYDDVAEILSRVLGRKITHVKLT 223 (285)
T ss_pred CCC-----cCCCeEEeeCCccCCHHHHHHHHHHHhCCceEEEeCC
Confidence 752 3358999999999999999999999999987666554
|
This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi. |
| >KOG2865 consensus NADH:ubiquinone oxidoreductase, NDUFA9/39kDa subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.5e-24 Score=197.98 Aligned_cols=290 Identities=19% Similarity=0.183 Sum_probs=223.0
Q ss_pred CCCCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccC
Q 012176 113 PRRPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV 192 (469)
Q Consensus 113 ~~~~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~ 192 (469)
..+.+|..+-|.|||||+|++++.+|.+.|-+|++--|..++. .+..+..-+-.++-+..-|+.|+++++++++-.
T Consensus 56 RsS~sGiVaTVFGAtGFlGryvvnklak~GSQviiPyR~d~~~----~r~lkvmGdLGQvl~~~fd~~DedSIr~vvk~s 131 (391)
T KOG2865|consen 56 RSSVSGIVATVFGATGFLGRYVVNKLAKMGSQVIIPYRGDEYD----PRHLKVMGDLGQVLFMKFDLRDEDSIRAVVKHS 131 (391)
T ss_pred cccccceEEEEecccccccHHHHHHHhhcCCeEEEeccCCccc----hhheeecccccceeeeccCCCCHHHHHHHHHhC
Confidence 4557889999999999999999999999999999999976532 222223334458999999999999999999998
Q ss_pred CccEEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcCccccCCCCCCCCCCCCCCCCCCChHHH
Q 012176 193 PFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAA 272 (469)
Q Consensus 193 ~~d~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y~~ 272 (469)
++|||+.|.... ...-.+.++|+.+.+.|.+.|+++|+. +||++|+.+.- ....+-|-.
T Consensus 132 --NVVINLIGrd~e----Tknf~f~Dvn~~~aerlAricke~GVe-rfIhvS~Lgan--------------v~s~Sr~Lr 190 (391)
T KOG2865|consen 132 --NVVINLIGRDYE----TKNFSFEDVNVHIAERLARICKEAGVE-RFIHVSCLGAN--------------VKSPSRMLR 190 (391)
T ss_pred --cEEEEeeccccc----cCCcccccccchHHHHHHHHHHhhChh-heeehhhcccc--------------ccChHHHHH
Confidence 999999986321 233356789999999999999999998 99999986521 134577999
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceEecccHHHHHHHHHHH
Q 012176 273 TKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGA 352 (469)
Q Consensus 273 sK~~~E~~~~~~~~~~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~~~~~~ 352 (469)
+|+++|..+++... ..||+||..|||..++ ++..+.....+-+.++++. .+.+..-.++||-|||++|+.+
T Consensus 191 sK~~gE~aVrdafP----eAtIirPa~iyG~eDr---fln~ya~~~rk~~~~pL~~--~GekT~K~PVyV~DVaa~IvnA 261 (391)
T KOG2865|consen 191 SKAAGEEAVRDAFP----EATIIRPADIYGTEDR---FLNYYASFWRKFGFLPLIG--KGEKTVKQPVYVVDVAAAIVNA 261 (391)
T ss_pred hhhhhHHHHHhhCC----cceeechhhhcccchh---HHHHHHHHHHhcCceeeec--CCcceeeccEEEehHHHHHHHh
Confidence 99999999999654 4799999999997665 5555555555577888884 3345777899999999999999
Q ss_pred hccCCCCCCCCCceEEEeCCCCcccHHHHHHHHHHHhCCCccceeecCCCC-------------C--------------C
Q 012176 353 TGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRN-------------G--------------D 405 (469)
Q Consensus 353 ~~~~~~~~~~~~~~iyni~~~~~vt~~el~~~i~~~~g~~~~~~~~~~~~~-------------~--------------~ 405 (469)
+..+ ++.|.+|...+++.+++.|+++.+-+...+-......|+|.. . .
T Consensus 262 vkDp-----~s~Gktye~vGP~~yql~eLvd~my~~~~~~~ry~r~~mP~f~a~a~~~~f~~~pf~~~~pln~d~ie~~~ 336 (391)
T KOG2865|consen 262 VKDP-----DSMGKTYEFVGPDRYQLSELVDIMYDMAREWPRYVRLPMPIFKAMAAARDFMIVPFPPPSPLNRDQIERLT 336 (391)
T ss_pred ccCc-----cccCceeeecCCchhhHHHHHHHHHHHHhhccccccCCcHHHHHHHhhhheeecCCCCCCCCCHHHhhhee
Confidence 9888 577899999999999999999999999887655555554420 0 0
Q ss_pred CCcccCChHHHHHhcCCCccCcHHHHHHHHHHHHHHH
Q 012176 406 VPYTHANVSLAYKDFGYKPTTDLAAGLRKFVKWYVSY 442 (469)
Q Consensus 406 ~~~~~~d~~ka~~~LG~~p~~~l~~~l~~~v~~~~~~ 442 (469)
+....++...-.++||.+++ .++..--+.+..|++.
T Consensus 337 v~~~vlt~~~tleDLgv~~t-~le~~~~e~l~~yR~~ 372 (391)
T KOG2865|consen 337 VTDLVLTGAPTLEDLGVVLT-KLELYPVEFLRQYRKG 372 (391)
T ss_pred ehhhhcCCCCcHhhcCceee-ecccccHHHHHHHhhc
Confidence 11122333333577999876 6776665666656554
|
|
| >PRK06482 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.6e-23 Score=199.62 Aligned_cols=236 Identities=16% Similarity=0.142 Sum_probs=172.1
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhcc-----C
Q 012176 118 GMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDV-----V 192 (469)
Q Consensus 118 ~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~-----~ 192 (469)
.|+||||||+|+||++++++|+++|++|++++|..+ ........ ...++.++.+|++|.++++++++. .
T Consensus 2 ~k~vlVtGasg~IG~~la~~L~~~g~~v~~~~r~~~----~~~~~~~~--~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 75 (276)
T PRK06482 2 SKTWFITGASSGFGRGMTERLLARGDRVAATVRRPD----ALDDLKAR--YGDRLWVLQLDVTDSAAVRAVVDRAFAALG 75 (276)
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCHH----HHHHHHHh--ccCceEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 368999999999999999999999999999998532 11111111 123788999999999998888764 2
Q ss_pred CccEEEEcccccChhh----hccChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEEcCccccCCCCCCCCCCCCCCC
Q 012176 193 PFTHVLHLAAQAGVRY----AMQNPQSYVASNIAGFVNLLEVC----KSVNPQPSIVWASSSSVYGLNTQVPFSESHRTD 264 (469)
Q Consensus 193 ~~d~Vih~Aa~~~~~~----~~~~~~~~~~~Nv~~~~~ll~aa----~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~ 264 (469)
++|+||||||...... ..++.+..+++|+.++.++++++ ++.+.. +||++||.+.....
T Consensus 76 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~-~iv~~sS~~~~~~~------------ 142 (276)
T PRK06482 76 RIDVVVSNAGYGLFGAAEELSDAQIRRQIDTNLIGSIQVIRAALPHLRRQGGG-RIVQVSSEGGQIAY------------ 142 (276)
T ss_pred CCCEEEECCCCCCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCC-EEEEEcCcccccCC------------
Confidence 5799999999754321 22345678899999999999997 445554 99999996543211
Q ss_pred CCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeecce---ecCCCCCC--------ChHHHHHHHHHcCCceEEEeeC
Q 012176 265 QPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTV---YGPWGRPD--------MAYFFFTKDILQGKTIDVYKTQ 330 (469)
Q Consensus 265 ~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v---~Gp~~~~~--------~~~~~~~~~~~~g~~~~~~~~~ 330 (469)
.+.+.|+.+|.+.|.+++.++.+ +|++++++|||.+ ||++.... .....+.+.+ ....+.+
T Consensus 143 ~~~~~Y~~sK~a~~~~~~~l~~~~~~~gi~v~~v~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---- 217 (276)
T PRK06482 143 PGFSLYHATKWGIEGFVEAVAQEVAPFGIEFTIVEPGPARTNFGAGLDRGAPLDAYDDTPVGDLRRAL-ADGSFAI---- 217 (276)
T ss_pred CCCchhHHHHHHHHHHHHHHHHHhhccCcEEEEEeCCccccCCcccccccCCCccccchhhHHHHHHH-hhccCCC----
Confidence 34578999999999999998876 5999999999988 66543211 1112233333 2222211
Q ss_pred CCCcceEecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCCcccHHHHHHHHHHHhCC
Q 012176 331 DDREVARDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNT 391 (469)
Q Consensus 331 ~~~~~~~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~~vt~~el~~~i~~~~g~ 391 (469)
+.+++|++++++.++..+. .+..||+++++..+..|+++.+.+.++.
T Consensus 218 --------~~d~~~~~~a~~~~~~~~~------~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 264 (276)
T PRK06482 218 --------PGDPQKMVQAMIASADQTP------APRRLTLGSDAYASIRAALSERLAALEA 264 (276)
T ss_pred --------CCCHHHHHHHHHHHHcCCC------CCeEEecChHHHHHHHHHHHHHHHHHHH
Confidence 3568999999999987542 2367999999999998888888877753
|
|
| >TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.1e-22 Score=238.86 Aligned_cols=258 Identities=21% Similarity=0.190 Sum_probs=184.9
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCC----CcEEEEeCCCCCCChhHHHHHHHh--------hccCCeEEEEecCCC---
Q 012176 117 NGMTVLVTGAAGFVGSHCSLALKKRG----DGVLGLDNFNSYYDPSLKRARQKL--------LQKHQVFIVEGDLND--- 181 (469)
Q Consensus 117 ~~~~VlVtGatG~IG~~l~~~L~~~G----~~V~~~~r~~~~~~~~~~~~~~~~--------~~~~~v~~v~~Dl~d--- 181 (469)
..++|+||||+||||.+++++|+++| ++|+++.|....... ..+..... ....+++++.+|+.+
T Consensus 970 ~~~~VlvTGatGflG~~l~~~Ll~~~~~~~~~V~~l~R~~~~~~~-~~~l~~~~~~~~~~~~~~~~~i~~~~gDl~~~~l 1048 (1389)
T TIGR03443 970 TPITVFLTGATGFLGSFILRDLLTRRSNSNFKVFAHVRAKSEEAG-LERLRKTGTTYGIWDEEWASRIEVVLGDLSKEKF 1048 (1389)
T ss_pred CCceEEEeCCccccHHHHHHHHHhcCCCCCcEEEEEECcCChHHH-HHHHHHHHHHhCCCchhhhcceEEEeccCCCccC
Confidence 45899999999999999999999987 799999996542211 11111110 001378999999974
Q ss_pred ---HHHHHHhhccCCccEEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcCccccCCCC-----
Q 012176 182 ---APLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNT----- 253 (469)
Q Consensus 182 ---~~~l~~~~~~~~~d~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS~~vyg~~~----- 253 (469)
.+.+.++..++ |+|||+|+..... .........|+.|+.+++++|++.+.+ +|+|+||.++|+...
T Consensus 1049 gl~~~~~~~l~~~~--d~iiH~Aa~~~~~---~~~~~~~~~nv~gt~~ll~~a~~~~~~-~~v~vSS~~v~~~~~~~~~~ 1122 (1389)
T TIGR03443 1049 GLSDEKWSDLTNEV--DVIIHNGALVHWV---YPYSKLRDANVIGTINVLNLCAEGKAK-QFSFVSSTSALDTEYYVNLS 1122 (1389)
T ss_pred CcCHHHHHHHHhcC--CEEEECCcEecCc---cCHHHHHHhHHHHHHHHHHHHHhCCCc-eEEEEeCeeecCcccccchh
Confidence 45677777766 9999999986432 334455568999999999999988876 999999999996421
Q ss_pred -------CCCCCCCCCC----CCCCChHHHHHHHHHHHHHHHHHHhCCcEEEEeecceecCCCCCCC----hHHHHHHHH
Q 012176 254 -------QVPFSESHRT----DQPASLYAATKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPDM----AYFFFTKDI 318 (469)
Q Consensus 254 -------~~~~~E~~~~----~~p~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~Gp~~~~~~----~~~~~~~~~ 318 (469)
...+.|++.. ..+.+.|+.+|+++|.++..+.+. |++++++|||.|||+...... ++..++...
T Consensus 1123 ~~~~~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~aE~l~~~~~~~-g~~~~i~Rpg~v~G~~~~g~~~~~~~~~~~~~~~ 1201 (1389)
T TIGR03443 1123 DELVQAGGAGIPESDDLMGSSKGLGTGYGQSKWVAEYIIREAGKR-GLRGCIVRPGYVTGDSKTGATNTDDFLLRMLKGC 1201 (1389)
T ss_pred hhhhhccCCCCCcccccccccccCCCChHHHHHHHHHHHHHHHhC-CCCEEEECCCccccCCCcCCCCchhHHHHHHHHH
Confidence 1123343321 123467999999999999987764 999999999999998654322 223333332
Q ss_pred HcCCceEEEeeCCCCcceEecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCCcccHHHHHHHHHHHhCCC
Q 012176 319 LQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTK 392 (469)
Q Consensus 319 ~~g~~~~~~~~~~~~~~~~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~~vt~~el~~~i~~~~g~~ 392 (469)
..- ..+ .+....++|++|+|++++++.++.++.. ...+.+||++++..+++.++++.+.+. |.+
T Consensus 1202 ~~~---~~~---p~~~~~~~~~~Vddva~ai~~~~~~~~~---~~~~~i~~~~~~~~~~~~~~~~~l~~~-g~~ 1265 (1389)
T TIGR03443 1202 IQL---GLI---PNINNTVNMVPVDHVARVVVAAALNPPK---ESELAVAHVTGHPRIRFNDFLGTLKTY-GYD 1265 (1389)
T ss_pred HHh---CCc---CCCCCccccccHHHHHHHHHHHHhCCcc---cCCCCEEEeCCCCCCcHHHHHHHHHHh-CCC
Confidence 222 222 2245578999999999999999875421 123469999999999999999999764 544
|
Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal. |
| >PRK13394 3-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.2e-23 Score=197.43 Aligned_cols=229 Identities=17% Similarity=0.109 Sum_probs=163.7
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccC---
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~--- 192 (469)
.++++||||||+|+||.+++++|+++|++|++++|+.+........... ....+.++.+|++|.+.++++++..
T Consensus 5 ~~~~~vlItGasg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~---~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 81 (262)
T PRK13394 5 LNGKTAVVTGAASGIGKEIALELARAGAAVAIADLNQDGANAVADEINK---AGGKAIGVAMDVTNEDAVNAGIDKVAER 81 (262)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHh---cCceEEEEECCCCCHHHHHHHHHHHHHH
Confidence 4578999999999999999999999999999999965422221111111 1235788999999999998888753
Q ss_pred --CccEEEEcccccChh----hhccChHHHHHHHHHH----HHHHHHHH-HhcCCCCeEEEEcCccccCCCCCCCCCCCC
Q 012176 193 --PFTHVLHLAAQAGVR----YAMQNPQSYVASNIAG----FVNLLEVC-KSVNPQPSIVWASSSSVYGLNTQVPFSESH 261 (469)
Q Consensus 193 --~~d~Vih~Aa~~~~~----~~~~~~~~~~~~Nv~~----~~~ll~aa-~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~ 261 (469)
++|+||||||..... ...+..+..+++|+.+ +..+++++ +..+.+ +||++||...+...
T Consensus 82 ~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~~~-~iv~~ss~~~~~~~--------- 151 (262)
T PRK13394 82 FGSVDILVSNAGIQIVNPIENYSFADWKKMQAIHVDGAFLTTKAALKHMYKDDRGG-VVIYMGSVHSHEAS--------- 151 (262)
T ss_pred cCCCCEEEECCccCCCCchhhCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhhcCCc-EEEEEcchhhcCCC---------
Confidence 479999999975432 1234456778899999 66666666 555554 99999996544221
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeecceecCCCCCCCh---------HHHHHHHHHcCCceEEEee
Q 012176 262 RTDQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPDMA---------YFFFTKDILQGKTIDVYKT 329 (469)
Q Consensus 262 ~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~Gp~~~~~~~---------~~~~~~~~~~g~~~~~~~~ 329 (469)
.+...|+.+|.+.+.+++.++.+ .+++++++|||.+++|....... ....+..++
T Consensus 152 ---~~~~~y~~sk~a~~~~~~~la~~~~~~~i~v~~v~pg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 218 (262)
T PRK13394 152 ---PLKSAYVTAKHGLLGLARVLAKEGAKHNVRSHVVCPGFVRTPLVDKQIPEQAKELGISEEEVVKKVM---------- 218 (262)
T ss_pred ---CCCcccHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcccchhhhhhhHhhhhccCCChHHHHHHHH----------
Confidence 34568999999999999998876 48999999999999985321100 001111111
Q ss_pred CCCCcceEecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCC
Q 012176 330 QDDREVARDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTS 374 (469)
Q Consensus 330 ~~~~~~~~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~ 374 (469)
+.+....+|++++|++++++.++..+.. ...|++|++.++.
T Consensus 219 -~~~~~~~~~~~~~dva~a~~~l~~~~~~---~~~g~~~~~~~g~ 259 (262)
T PRK13394 219 -LGKTVDGVFTTVEDVAQTVLFLSSFPSA---ALTGQSFVVSHGW 259 (262)
T ss_pred -hcCCCCCCCCCHHHHHHHHHHHcCcccc---CCcCCEEeeCCce
Confidence 1134457899999999999999876532 2346899998874
|
|
| >PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=2e-22 Score=192.24 Aligned_cols=228 Identities=15% Similarity=0.087 Sum_probs=165.9
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHh-hccCCeEEEEecCCCHHHHHHhhccC--
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKL-LQKHQVFIVEGDLNDAPLLTKLFDVV-- 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~v~~v~~Dl~d~~~l~~~~~~~-- 192 (469)
.++|+||||||+|+||++|+++|+++|++|+++.|.... ......... ....++.++.+|+.|++.+.+++++.
T Consensus 4 ~~~~~vlItGasg~iG~~l~~~l~~~g~~v~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~ 80 (249)
T PRK12825 4 LMGRVALVTGAARGLGRAIALRLARAGADVVVHYRSDEE---AAEELVEAVEALGRRAQAVQADVTDKAALEAAVAAAVE 80 (249)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCCHH---HHHHHHHHHHhcCCceEEEECCcCCHHHHHHHHHHHHH
Confidence 456799999999999999999999999999887775431 111111111 12346889999999999999888654
Q ss_pred ---CccEEEEcccccChhh----hccChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEEcCccccCCCCCCCCCCCC
Q 012176 193 ---PFTHVLHLAAQAGVRY----AMQNPQSYVASNIAGFVNLLEVC----KSVNPQPSIVWASSSSVYGLNTQVPFSESH 261 (469)
Q Consensus 193 ---~~d~Vih~Aa~~~~~~----~~~~~~~~~~~Nv~~~~~ll~aa----~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~ 261 (469)
++|+|||+||...... ..+..+..++.|+.++.++++++ ++.+.+ +||++||...+.+.
T Consensus 81 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~-~~i~~SS~~~~~~~--------- 150 (249)
T PRK12825 81 RFGRIDILVNNAGIFEDKPLADMSDDEWDEVIDVNLSGVFHLLRAVVPPMRKQRGG-RIVNISSVAGLPGW--------- 150 (249)
T ss_pred HcCCCCEEEECCccCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCC-EEEEECccccCCCC---------
Confidence 6799999999643322 23445678999999999999887 455654 99999998776432
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceEe
Q 012176 262 RTDQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARD 338 (469)
Q Consensus 262 ~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 338 (469)
.+...|+.+|.+.|.+++.++++ .+++++++|||.++|+....... ..+... .... ....
T Consensus 151 ---~~~~~y~~sK~~~~~~~~~~~~~~~~~~i~~~~i~pg~~~~~~~~~~~~-~~~~~~---~~~~----------~~~~ 213 (249)
T PRK12825 151 ---PGRSNYAAAKAGLVGLTKALARELAEYGITVNMVAPGDIDTDMKEATIE-EAREAK---DAET----------PLGR 213 (249)
T ss_pred ---CCchHHHHHHHHHHHHHHHHHHHHhhcCeEEEEEEECCccCCccccccc-hhHHhh---hccC----------CCCC
Confidence 24567999999999999988775 58999999999999986543211 111111 0011 1223
Q ss_pred cccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCCcc
Q 012176 339 FTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTSPV 376 (469)
Q Consensus 339 ~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~~v 376 (469)
+++++|+++++..++.+... ...|++|+++++..+
T Consensus 214 ~~~~~dva~~~~~~~~~~~~---~~~g~~~~i~~g~~~ 248 (249)
T PRK12825 214 SGTPEDIARAVAFLCSDASD---YITGQVIEVTGGVDV 248 (249)
T ss_pred CcCHHHHHHHHHHHhCcccc---CcCCCEEEeCCCEee
Confidence 89999999999999866432 345799999987643
|
|
| >PRK06194 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.3e-23 Score=203.88 Aligned_cols=250 Identities=15% Similarity=0.091 Sum_probs=174.0
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhc-cCCeEEEEecCCCHHHHHHhhccC--
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQ-KHQVFIVEGDLNDAPLLTKLFDVV-- 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~v~~v~~Dl~d~~~l~~~~~~~-- 192 (469)
.++++||||||+|+||++++++|+++|++|++++|..+. ..+....... ..++.++.+|++|.++++++++..
T Consensus 4 ~~~k~vlVtGasggIG~~la~~l~~~G~~V~~~~r~~~~----~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~ 79 (287)
T PRK06194 4 FAGKVAVITGAASGFGLAFARIGAALGMKLVLADVQQDA----LDRAVAELRAQGAEVLGVRTDVSDAAQVEALADAALE 79 (287)
T ss_pred CCCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEeCChHH----HHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHH
Confidence 467899999999999999999999999999999985431 2222222211 236788999999999999888753
Q ss_pred ---CccEEEEcccccChh----hhccChHHHHHHHHHHHHHHHHH----HHhcCCC-----CeEEEEcCccccCCCCCCC
Q 012176 193 ---PFTHVLHLAAQAGVR----YAMQNPQSYVASNIAGFVNLLEV----CKSVNPQ-----PSIVWASSSSVYGLNTQVP 256 (469)
Q Consensus 193 ---~~d~Vih~Aa~~~~~----~~~~~~~~~~~~Nv~~~~~ll~a----a~~~~~~-----~~~V~~SS~~vyg~~~~~~ 256 (469)
++|+||||||..... ...++++..+++|+.++.+++++ +.+.+.+ +++|++||.+.+.+.
T Consensus 80 ~~g~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~---- 155 (287)
T PRK06194 80 RFGAVHLLFNNAGVGAGGLVWENSLADWEWVLGVNLWGVIHGVRAFTPLMLAAAEKDPAYEGHIVNTASMAGLLAP---- 155 (287)
T ss_pred HcCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEeCChhhccCC----
Confidence 579999999985432 22344556789999999998777 3444431 489999998776432
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHHHHHHHHhC-----CcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCC
Q 012176 257 FSESHRTDQPASLYAATKKAGEEIAHTYNHIYG-----LALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQD 331 (469)
Q Consensus 257 ~~E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~g-----i~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 331 (469)
.+...|+.+|.+.|.+++.++.+++ ++++.+.||.|..+.. ....+++..+. +
T Consensus 156 --------~~~~~Y~~sK~a~~~~~~~l~~e~~~~~~~irv~~v~pg~i~t~~~-----------~~~~~~~~~~~---~ 213 (287)
T PRK06194 156 --------PAMGIYNVSKHAVVSLTETLYQDLSLVTDQVGASVLCPYFVPTGIW-----------QSERNRPADLA---N 213 (287)
T ss_pred --------CCCcchHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEEeCcccCccc-----------cccccCchhcc---c
Confidence 2346799999999999999987654 6677777776655421 22234555555 5
Q ss_pred CCcceEecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCCcccHHHHHHHHHHHhCCCccceeecCCCCCCCCcccC
Q 012176 332 DREVARDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRNGDVPYTHA 411 (469)
Q Consensus 332 ~~~~~~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~~vt~~el~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~ 411 (469)
++.+.++|++++|++..+.... .++..|+++.+.+.+.........+....++......
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~---------------------~~s~~dva~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (287)
T PRK06194 214 TAPPTRSQLIAQAMSQKAVGSG---------------------KVTAEEVAQLVFDAIRAGRFYIYSHPQALASVRTRME 272 (287)
T ss_pred CccccchhhHHHHHHHhhhhcc---------------------CCCHHHHHHHHHHHHHcCCeEEEcCHHHHHHHHHHHH
Confidence 5778889999999887753220 1788999999998876544333333222333333344
Q ss_pred ChHHH
Q 012176 412 NVSLA 416 (469)
Q Consensus 412 d~~ka 416 (469)
|.+++
T Consensus 273 ~~~~~ 277 (287)
T PRK06194 273 DIVQQ 277 (287)
T ss_pred HHHHh
Confidence 44444
|
|
| >PRK09135 pteridine reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.3e-22 Score=192.20 Aligned_cols=230 Identities=13% Similarity=0.053 Sum_probs=162.1
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhh--ccCCeEEEEecCCCHHHHHHhhccC-
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLL--QKHQVFIVEGDLNDAPLLTKLFDVV- 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~v~~v~~Dl~d~~~l~~~~~~~- 192 (469)
..+++||||||+|+||++++++|+++|++|++++|.... .......... ....+.++.+|++|.+.+.++++..
T Consensus 4 ~~~~~vlItGa~g~iG~~l~~~l~~~g~~v~~~~r~~~~---~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~ 80 (249)
T PRK09135 4 DSAKVALITGGARRIGAAIARTLHAAGYRVAIHYHRSAA---EADALAAELNALRPGSAAALQADLLDPDALPELVAACV 80 (249)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHH---HHHHHHHHHHhhcCCceEEEEcCCCCHHHHHHHHHHHH
Confidence 456899999999999999999999999999999985431 1111111111 1236889999999999999888753
Q ss_pred ----CccEEEEcccccChh----hhccChHHHHHHHHHHHHHHHHHHHhcC--CCCeEEEEcCccccCCCCCCCCCCCCC
Q 012176 193 ----PFTHVLHLAAQAGVR----YAMQNPQSYVASNIAGFVNLLEVCKSVN--PQPSIVWASSSSVYGLNTQVPFSESHR 262 (469)
Q Consensus 193 ----~~d~Vih~Aa~~~~~----~~~~~~~~~~~~Nv~~~~~ll~aa~~~~--~~~~~V~~SS~~vyg~~~~~~~~E~~~ 262 (469)
++|+|||+||..... ...++++.++++|+.++.++++++...- ....++++++.... .+
T Consensus 81 ~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~-----------~~ 149 (249)
T PRK09135 81 AAFGRLDALVNNASSFYPTPLGSITEAQWDDLFASNLKAPFFLSQAAAPQLRKQRGAIVNITDIHAE-----------RP 149 (249)
T ss_pred HHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhchhHHHHHHHHHHHHhhCCeEEEEEeChhhc-----------CC
Confidence 579999999964321 1234457789999999999999986421 12267776653221 11
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHh--CCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceEecc
Q 012176 263 TDQPASLYAATKKAGEEIAHTYNHIY--GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFT 340 (469)
Q Consensus 263 ~~~p~~~Y~~sK~~~E~~~~~~~~~~--gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v 340 (469)
..+...|+.+|.++|.+++.++.++ +++++++|||.++||..... +...+......+.++.. +.
T Consensus 150 -~~~~~~Y~~sK~~~~~~~~~l~~~~~~~i~~~~v~pg~~~~~~~~~~-~~~~~~~~~~~~~~~~~------------~~ 215 (249)
T PRK09135 150 -LKGYPVYCAAKAALEMLTRSLALELAPEVRVNAVAPGAILWPEDGNS-FDEEARQAILARTPLKR------------IG 215 (249)
T ss_pred -CCCchhHHHHHHHHHHHHHHHHHHHCCCCeEEEEEeccccCcccccc-CCHHHHHHHHhcCCcCC------------Cc
Confidence 2567889999999999999999876 59999999999999975432 11223333333333211 22
Q ss_pred cHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCCccc
Q 012176 341 YIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTSPVP 377 (469)
Q Consensus 341 ~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~~vt 377 (469)
+++|+|++++.++.... ...|++||++++..++
T Consensus 216 ~~~d~a~~~~~~~~~~~----~~~g~~~~i~~g~~~~ 248 (249)
T PRK09135 216 TPEDIAEAVRFLLADAS----FITGQILAVDGGRSLT 248 (249)
T ss_pred CHHHHHHHHHHHcCccc----cccCcEEEECCCeecc
Confidence 48999999976654332 2456999999988654
|
|
| >PLN00141 Tic62-NAD(P)-related group II protein; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.9e-22 Score=193.81 Aligned_cols=230 Identities=19% Similarity=0.136 Sum_probs=159.4
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCC-HHHHHHhh-ccCC
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLND-APLLTKLF-DVVP 193 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d-~~~l~~~~-~~~~ 193 (469)
..+|+|+||||+|+||++++++|+++|++|+++.|..+ +.........+++++.+|++| .+.+.+.+ .+.
T Consensus 15 ~~~~~ilItGasG~iG~~l~~~L~~~g~~V~~~~R~~~-------~~~~~~~~~~~~~~~~~Dl~d~~~~l~~~~~~~~- 86 (251)
T PLN00141 15 VKTKTVFVAGATGRTGKRIVEQLLAKGFAVKAGVRDVD-------KAKTSLPQDPSLQIVRADVTEGSDKLVEAIGDDS- 86 (251)
T ss_pred ccCCeEEEECCCcHHHHHHHHHHHhCCCEEEEEecCHH-------HHHHhcccCCceEEEEeeCCCCHHHHHHHhhcCC-
Confidence 45689999999999999999999999999999998543 111111122479999999998 46676766 455
Q ss_pred ccEEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcCccccCCCCCCCCCCCCCCCCCCChHHHH
Q 012176 194 FTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAAT 273 (469)
Q Consensus 194 ~d~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y~~s 273 (469)
|+|||+++.... .++...+++|..++.++++++++.+.+ +||++||.++||...+.+..+......+...|...
T Consensus 87 -d~vi~~~g~~~~----~~~~~~~~~n~~~~~~ll~a~~~~~~~-~iV~iSS~~v~g~~~~~~~~~~~~~~~~~~~~~~~ 160 (251)
T PLN00141 87 -DAVICATGFRRS----FDPFAPWKVDNFGTVNLVEACRKAGVT-RFILVSSILVNGAAMGQILNPAYIFLNLFGLTLVA 160 (251)
T ss_pred -CEEEECCCCCcC----CCCCCceeeehHHHHHHHHHHHHcCCC-EEEEEccccccCCCcccccCcchhHHHHHHHHHHH
Confidence 999999886321 122334567899999999999998886 99999999999854332322211111122334567
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceEecccHHHHHHHHHHHh
Q 012176 274 KKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGAT 353 (469)
Q Consensus 274 K~~~E~~~~~~~~~~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~~~~~~~ 353 (469)
|..+|+++++ .|+++++|||+.+++.... +. ..+. ........+++.+|+|++++.++
T Consensus 161 k~~~e~~l~~----~gi~~~iirpg~~~~~~~~--------------~~-~~~~---~~~~~~~~~i~~~dvA~~~~~~~ 218 (251)
T PLN00141 161 KLQAEKYIRK----SGINYTIVRPGGLTNDPPT--------------GN-IVME---PEDTLYEGSISRDQVAEVAVEAL 218 (251)
T ss_pred HHHHHHHHHh----cCCcEEEEECCCccCCCCC--------------ce-EEEC---CCCccccCcccHHHHHHHHHHHh
Confidence 8888877654 5899999999999986321 11 1111 11112235799999999999999
Q ss_pred ccCCCCCCCCCceEEEeCC---CCcccHHHHHHHHH
Q 012176 354 GSGGKKRGPAQLRVYNLGN---TSPVPVGRLVSILE 386 (469)
Q Consensus 354 ~~~~~~~~~~~~~iyni~~---~~~vt~~el~~~i~ 386 (469)
.++. ..+.++.+.+ +...++.+++..+.
T Consensus 219 ~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (251)
T PLN00141 219 LCPE-----SSYKVVEIVARADAPKRSYKDLFASIK 249 (251)
T ss_pred cChh-----hcCcEEEEecCCCCCchhHHHHHHHhh
Confidence 8762 3346777765 22478888877664
|
|
| >PRK08263 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.3e-22 Score=194.65 Aligned_cols=238 Identities=14% Similarity=0.132 Sum_probs=173.4
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccC----
Q 012176 117 NGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV---- 192 (469)
Q Consensus 117 ~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~---- 192 (469)
++++|+||||+|+||++++++|+++|++|++++|+.+ .+...... ....+.++.+|++|++++.++++.+
T Consensus 2 ~~k~vlItGasg~iG~~~a~~l~~~g~~V~~~~r~~~----~~~~~~~~--~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 75 (275)
T PRK08263 2 MEKVWFITGASRGFGRAWTEAALERGDRVVATARDTA----TLADLAEK--YGDRLLPLALDVTDRAAVFAAVETAVEHF 75 (275)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEECCHH----HHHHHHHh--ccCCeeEEEccCCCHHHHHHHHHHHHHHc
Confidence 4578999999999999999999999999999998543 11111111 1336888999999999988887753
Q ss_pred -CccEEEEcccccChh----hhccChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEEcCccccCCCCCCCCCCCCCC
Q 012176 193 -PFTHVLHLAAQAGVR----YAMQNPQSYVASNIAGFVNLLEVC----KSVNPQPSIVWASSSSVYGLNTQVPFSESHRT 263 (469)
Q Consensus 193 -~~d~Vih~Aa~~~~~----~~~~~~~~~~~~Nv~~~~~ll~aa----~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~ 263 (469)
++|+||||||..... ..+++++..+++|+.++..+++++ ++.+.+ ++|++||.+.+.+.
T Consensus 76 ~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~-~iv~vsS~~~~~~~----------- 143 (275)
T PRK08263 76 GRLDIVVNNAGYGLFGMIEEVTESEARAQIDTNFFGALWVTQAVLPYLREQRSG-HIIQISSIGGISAF----------- 143 (275)
T ss_pred CCCCEEEECCCCccccccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCC-EEEEEcChhhcCCC-----------
Confidence 679999999975432 234566788999999998888875 455554 99999998776533
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeecceecCCCCCCC-------hHHHHHHHHHcCCceEEEeeCCCC
Q 012176 264 DQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPDM-------AYFFFTKDILQGKTIDVYKTQDDR 333 (469)
Q Consensus 264 ~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~Gp~~~~~~-------~~~~~~~~~~~g~~~~~~~~~~~~ 333 (469)
.....|+.+|.+.+.+++.++.+ +|++++++|||.+..+...... ....+...+...
T Consensus 144 -~~~~~Y~~sKaa~~~~~~~la~e~~~~gi~v~~v~Pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 210 (275)
T PRK08263 144 -PMSGIYHASKWALEGMSEALAQEVAEFGIKVTLVEPGGYSTDWAGTSAKRATPLDAYDTLREELAEQ------------ 210 (275)
T ss_pred -CCccHHHHHHHHHHHHHHHHHHHhhhhCcEEEEEecCCccCCccccccccCCCchhhhhHHHHHHHH------------
Confidence 23467999999999999988875 6899999999998876442110 111111111111
Q ss_pred cceEec-ccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCCcccHHHHHHHHHHHhC
Q 012176 334 EVARDF-TYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLN 390 (469)
Q Consensus 334 ~~~~~~-v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~~vt~~el~~~i~~~~g 390 (469)
.....+ ++++|++++++.+++.+ ...++.|+.+++..+++.++.+.+.+..+
T Consensus 211 ~~~~~~~~~p~dva~~~~~l~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (275)
T PRK08263 211 WSERSVDGDPEAAAEALLKLVDAE-----NPPLRLFLGSGVLDLAKADYERRLATWEE 263 (275)
T ss_pred HHhccCCCCHHHHHHHHHHHHcCC-----CCCeEEEeCchHHHHHHHHHHHHHHHHHH
Confidence 111234 78999999999999876 23346666666678999999999998754
|
|
| >COG3320 Putative dehydrogenase domain of multifunctional non-ribosomal peptide synthetases and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.3e-23 Score=200.31 Aligned_cols=261 Identities=23% Similarity=0.238 Sum_probs=175.8
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCC-cEEEEeCCCCCCChhHHHHHHHh--------hccCCeEEEEecCC------CHH
Q 012176 119 MTVLVTGAAGFVGSHCSLALKKRGD-GVLGLDNFNSYYDPSLKRARQKL--------LQKHQVFIVEGDLN------DAP 183 (469)
Q Consensus 119 ~~VlVtGatG~IG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~--------~~~~~v~~v~~Dl~------d~~ 183 (469)
++||+||||||+|.+++.+|+.+-. +|++++|..+... ...+..+.. ....+|+++.||+. +..
T Consensus 1 ~~vlLTGATGFLG~yLl~eLL~~~~~kv~cLVRA~s~E~-a~~RL~~~~~~~~~~~e~~~~ri~vv~gDl~e~~lGL~~~ 79 (382)
T COG3320 1 RNVLLTGATGFLGAYLLLELLDRSDAKVICLVRAQSDEA-ALARLEKTFDLYRHWDELSADRVEVVAGDLAEPDLGLSER 79 (382)
T ss_pred CeEEEecCchHhHHHHHHHHHhcCCCcEEEEEecCCHHH-HHHHHHHHhhhhhhhhhhhcceEEEEecccccccCCCCHH
Confidence 4799999999999999999998854 9999999665221 122222111 22458999999997 556
Q ss_pred HHHHhhccCCccEEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcCccccCCCCC----CCCCC
Q 012176 184 LLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQ----VPFSE 259 (469)
Q Consensus 184 ~l~~~~~~~~~d~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS~~vyg~~~~----~~~~E 259 (469)
.+.++.+.+ |.|||||+.++. ...+.+....|+.||..+++.|.....+ .++|+||++|+..... ..++|
T Consensus 80 ~~~~La~~v--D~I~H~gA~Vn~---v~pYs~L~~~NVlGT~evlrLa~~gk~K-p~~yVSsisv~~~~~~~~~~~~~~~ 153 (382)
T COG3320 80 TWQELAENV--DLIIHNAALVNH---VFPYSELRGANVLGTAEVLRLAATGKPK-PLHYVSSISVGETEYYSNFTVDFDE 153 (382)
T ss_pred HHHHHhhhc--ceEEecchhhcc---cCcHHHhcCcchHhHHHHHHHHhcCCCc-eeEEEeeeeeccccccCCCcccccc
Confidence 789999988 999999998553 2556678889999999999999988766 8999999999864322 22332
Q ss_pred CCCC----CCCCChHHHHHHHHHHHHHHHHHHhCCcEEEEeecceecCCCC----CCChHHHHHHHHHcCCceEEEeeCC
Q 012176 260 SHRT----DQPASLYAATKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGR----PDMAYFFFTKDILQGKTIDVYKTQD 331 (469)
Q Consensus 260 ~~~~----~~p~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~Gp~~~----~~~~~~~~~~~~~~g~~~~~~~~~~ 331 (469)
.++. ..+.++|++||+++|.++++.... |++++|+|||+|.|+... ...++..|+..+++-+.++-
T Consensus 154 ~~~~~~~~~~~~~GY~~SKwvaE~Lvr~A~~r-GLpv~I~Rpg~I~gds~tG~~n~~D~~~Rlv~~~~~lg~~P~----- 227 (382)
T COG3320 154 ISPTRNVGQGLAGGYGRSKWVAEKLVREAGDR-GLPVTIFRPGYITGDSRTGALNTRDFLTRLVLGLLQLGIAPD----- 227 (382)
T ss_pred ccccccccCccCCCcchhHHHHHHHHHHHhhc-CCCeEEEecCeeeccCccCccccchHHHHHHHHHHHhCCCCC-----
Confidence 2221 145588999999999999998887 999999999999997552 12233456655555443331
Q ss_pred CCcceEecccHHHHHHHHHHHhccCCC-----C-CCCCCceEEE-eCCCCcccHHHHHHHHHH--HhCCCc
Q 012176 332 DREVARDFTYIDDVVKGCVGATGSGGK-----K-RGPAQLRVYN-LGNTSPVPVGRLVSILEN--LLNTKA 393 (469)
Q Consensus 332 ~~~~~~~~v~v~Dva~~~~~~~~~~~~-----~-~~~~~~~iyn-i~~~~~vt~~el~~~i~~--~~g~~~ 393 (469)
.....+.+.++.++.++......... . ........|. ..-|..+.+.++++-+.+ ..+.+.
T Consensus 228 -~~~~~~~~p~~~v~~~v~~~~~~~~~~~~~l~~~~~~~f~~~~~~~~~~~i~l~~~~~w~~~~~~a~~~~ 297 (382)
T COG3320 228 -SEYSLDMLPVDHVARAVVAPSVQVAEAIAALGAHSDIRFNQLHMLTHPDEIGLDEYVDWLISLDIAGYPE 297 (382)
T ss_pred -cccchhhCccceeeEEeehhhhhHHHHHHHhccCccchhhheecccCCCccchhHHHHhHhhhhccCCch
Confidence 22334444444444333332221100 0 0011123333 233778999999999888 444443
|
|
| >PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.9e-22 Score=190.12 Aligned_cols=227 Identities=14% Similarity=0.070 Sum_probs=166.1
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhc-cCCeEEEEecCCCHHHHHHhhccC--
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQ-KHQVFIVEGDLNDAPLLTKLFDVV-- 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~v~~v~~Dl~d~~~l~~~~~~~-- 192 (469)
..+|+|+||||+|+||.+++++|+++|++|++++|+... .......... ...+.++.+|+.|.+++++++++.
T Consensus 4 ~~~~~ilItGasg~iG~~l~~~l~~~g~~V~~~~r~~~~----~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 79 (251)
T PRK12826 4 LEGRVALVTGAARGIGRAIAVRLAADGAEVIVVDICGDD----AAATAELVEAAGGKARARQVDVRDRAALKAAVAAGVE 79 (251)
T ss_pred CCCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHH----HHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHH
Confidence 567899999999999999999999999999999995421 1111111111 235889999999999999988754
Q ss_pred ---CccEEEEcccccCh----hhhccChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEEcCccccCCCCCCCCCCCC
Q 012176 193 ---PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCK----SVNPQPSIVWASSSSVYGLNTQVPFSESH 261 (469)
Q Consensus 193 ---~~d~Vih~Aa~~~~----~~~~~~~~~~~~~Nv~~~~~ll~aa~----~~~~~~~~V~~SS~~vyg~~~~~~~~E~~ 261 (469)
++|+|||++|.... ....+++...++.|+.++.++++++. +.+.+ +||++||...++..
T Consensus 80 ~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~-~ii~~ss~~~~~~~--------- 149 (251)
T PRK12826 80 DFGRLDILVANAGIFPLTPFAEMDDEQWERVIDVNLTGTFLLTQAALPALIRAGGG-RIVLTSSVAGPRVG--------- 149 (251)
T ss_pred HhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCc-EEEEEechHhhccC---------
Confidence 57999999987554 23345566789999999999998874 34443 89999998765111
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceEe
Q 012176 262 RTDQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARD 338 (469)
Q Consensus 262 ~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 338 (469)
..+...|+.+|.++|.+++.++.+ .+++++++|||.++||....... ..+...+..+.++ ..
T Consensus 150 --~~~~~~y~~sK~a~~~~~~~~~~~~~~~~i~~~~i~pg~~~~~~~~~~~~-~~~~~~~~~~~~~------------~~ 214 (251)
T PRK12826 150 --YPGLAHYAASKAGLVGFTRALALELAARNITVNSVHPGGVDTPMAGNLGD-AQWAEAIAAAIPL------------GR 214 (251)
T ss_pred --CCCccHHHHHHHHHHHHHHHHHHHHHHcCeEEEEEeeCCCCcchhhhcCc-hHHHHHHHhcCCC------------CC
Confidence 134567999999999999998765 48999999999999986543211 1112222222221 14
Q ss_pred cccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCC
Q 012176 339 FTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTS 374 (469)
Q Consensus 339 ~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~ 374 (469)
+++++|++++++.++..... ...|++|++.++.
T Consensus 215 ~~~~~dva~~~~~l~~~~~~---~~~g~~~~~~~g~ 247 (251)
T PRK12826 215 LGEPEDIAAAVLFLASDEAR---YITGQTLPVDGGA 247 (251)
T ss_pred CcCHHHHHHHHHHHhCcccc---CcCCcEEEECCCc
Confidence 78999999999998865432 2456999998865
|
|
| >PRK05875 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.8e-22 Score=194.16 Aligned_cols=245 Identities=15% Similarity=0.072 Sum_probs=173.5
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhc---cCCeEEEEecCCCHHHHHHhhccC
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQ---KHQVFIVEGDLNDAPLLTKLFDVV 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~---~~~v~~v~~Dl~d~~~l~~~~~~~ 192 (469)
+++++|+||||+|+||+++++.|+++|++|++++|..+. .......... ..++.++.+|++|++++.++++..
T Consensus 5 ~~~k~vlItGasg~IG~~la~~l~~~G~~V~~~~r~~~~----~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~ 80 (276)
T PRK05875 5 FQDRTYLVTGGGSGIGKGVAAGLVAAGAAVMIVGRNPDK----LAAAAEEIEALKGAGAVRYEPADVTDEDQVARAVDAA 80 (276)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEeCCHHH----HHHHHHHHHhccCCCceEEEEcCCCCHHHHHHHHHHH
Confidence 457899999999999999999999999999999985431 1111111111 246888999999999998888754
Q ss_pred -----CccEEEEcccccCh-----hhhccChHHHHHHHHHHHHHHHHHHHhcC---CCCeEEEEcCccccCCCCCCCCCC
Q 012176 193 -----PFTHVLHLAAQAGV-----RYAMQNPQSYVASNIAGFVNLLEVCKSVN---PQPSIVWASSSSVYGLNTQVPFSE 259 (469)
Q Consensus 193 -----~~d~Vih~Aa~~~~-----~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~---~~~~~V~~SS~~vyg~~~~~~~~E 259 (469)
++|+||||||.... ....++....+++|+.++..+++++.+.. ..++||++||...+...
T Consensus 81 ~~~~~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~~sS~~~~~~~------- 153 (276)
T PRK05875 81 TAWHGRLHGVVHCAGGSETIGPITQIDSDAWRRTVDLNVNGTMYVLKHAARELVRGGGGSFVGISSIAASNTH------- 153 (276)
T ss_pred HHHcCCCCEEEECCCcccCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEechhhcCCC-------
Confidence 67999999986421 12223456788999999999998765432 12389999998775422
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcce
Q 012176 260 SHRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVA 336 (469)
Q Consensus 260 ~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 336 (469)
.+.+.|+.+|.+.|.+++.++.++ ++++++||||.+.++...................+ .
T Consensus 154 -----~~~~~Y~~sK~a~~~~~~~~~~~~~~~~i~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~~------------~ 216 (276)
T PRK05875 154 -----RWFGAYGVTKSAVDHLMKLAADELGPSWVRVNSIRPGLIRTDLVAPITESPELSADYRACTP------------L 216 (276)
T ss_pred -----CCCcchHHHHHHHHHHHHHHHHHhcccCeEEEEEecCccCCccccccccCHHHHHHHHcCCC------------C
Confidence 345789999999999999998775 69999999999987643221110111122222211 2
Q ss_pred EecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCCcc----cHHHHHHHHHHHhCC
Q 012176 337 RDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTSPV----PVGRLVSILENLLNT 391 (469)
Q Consensus 337 ~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~~v----t~~el~~~i~~~~g~ 391 (469)
..+++++|+|++++.++..+.. ...+++|+++++..+ +..|+++.+.+..|.
T Consensus 217 ~~~~~~~dva~~~~~l~~~~~~---~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 272 (276)
T PRK05875 217 PRVGEVEDVANLAMFLLSDAAS---WITGQVINVDGGHMLRRGPDFSSMLEPVFGADGL 272 (276)
T ss_pred CCCcCHHHHHHHHHHHcCchhc---CcCCCEEEECCCeeccCCccHHHHHHHHhhHHHH
Confidence 3367799999999999876532 234699999998876 677777766655443
|
|
| >PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.8e-21 Score=187.65 Aligned_cols=224 Identities=16% Similarity=0.146 Sum_probs=160.3
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhc-cCCeEEEEecCCCHHHHHHhhccC--
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQ-KHQVFIVEGDLNDAPLLTKLFDVV-- 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~v~~v~~Dl~d~~~l~~~~~~~-- 192 (469)
.++|+++||||+|+||++++++|+++|++|++++|+.. .......... ...+.++.+|++|.+++.++++..
T Consensus 6 ~~~k~vlVtGas~gIG~~la~~l~~~G~~v~~~~r~~~-----~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 80 (260)
T PRK12823 6 FAGKVVVVTGAAQGIGRGVALRAAAEGARVVLVDRSEL-----VHEVAAELRAAGGEALALTADLETYAGAQAAMAAAVE 80 (260)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCchH-----HHHHHHHHHhcCCeEEEEEEeCCCHHHHHHHHHHHHH
Confidence 56789999999999999999999999999999998531 1111112111 236788999999999888777653
Q ss_pred ---CccEEEEcccccC---h--hhhccChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEEcCccccCCCCCCCCCCC
Q 012176 193 ---PFTHVLHLAAQAG---V--RYAMQNPQSYVASNIAGFVNLLEVC----KSVNPQPSIVWASSSSVYGLNTQVPFSES 260 (469)
Q Consensus 193 ---~~d~Vih~Aa~~~---~--~~~~~~~~~~~~~Nv~~~~~ll~aa----~~~~~~~~~V~~SS~~vyg~~~~~~~~E~ 260 (469)
++|+||||||... . ....++.+..+++|+.++..+++++ ++.+.. +||++||...++.
T Consensus 81 ~~~~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g-~iv~~sS~~~~~~--------- 150 (260)
T PRK12823 81 AFGRIDVLINNVGGTIWAKPFEEYEEEQIEAEIRRSLFPTLWCCRAVLPHMLAQGGG-AIVNVSSIATRGI--------- 150 (260)
T ss_pred HcCCCeEEEECCccccCCCChhhCChHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCC-eEEEEcCccccCC---------
Confidence 5799999998531 1 1233445677899999887666554 345544 8999999877642
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCC-----------CCChHHHHHHHHHcCCceEE
Q 012176 261 HRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGR-----------PDMAYFFFTKDILQGKTIDV 326 (469)
Q Consensus 261 ~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~-----------~~~~~~~~~~~~~~g~~~~~ 326 (469)
+...|+.+|.+.+.+++.++.++ |+++++|+||.|++|... ....+..+...+..+.++..
T Consensus 151 -----~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (260)
T PRK12823 151 -----NRVPYSAAKGGVNALTASLAFEYAEHGIRVNAVAPGGTEAPPRRVPRNAAPQSEQEKAWYQQIVDQTLDSSLMKR 225 (260)
T ss_pred -----CCCccHHHHHHHHHHHHHHHHHhcccCcEEEEEecCccCCcchhhHHhhccccccccccHHHHHHHHhccCCccc
Confidence 23469999999999999998776 899999999999997311 11123344444444444322
Q ss_pred EeeCCCCcceEecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCC
Q 012176 327 YKTQDDREVARDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTS 374 (469)
Q Consensus 327 ~~~~~~~~~~~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~ 374 (469)
+.+++|+|++++.++..... ...|++|++.+++
T Consensus 226 ------------~~~~~dva~~~~~l~s~~~~---~~~g~~~~v~gg~ 258 (260)
T PRK12823 226 ------------YGTIDEQVAAILFLASDEAS---YITGTVLPVGGGD 258 (260)
T ss_pred ------------CCCHHHHHHHHHHHcCcccc---cccCcEEeecCCC
Confidence 34689999999998765421 2456899998765
|
|
| >PRK05876 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=7.4e-22 Score=192.30 Aligned_cols=244 Identities=18% Similarity=0.102 Sum_probs=169.3
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhc-cCCeEEEEecCCCHHHHHHhhccC--
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQ-KHQVFIVEGDLNDAPLLTKLFDVV-- 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~v~~v~~Dl~d~~~l~~~~~~~-- 192 (469)
.++|+++||||+|+||+++++.|+++|++|++++|+.+. +.+....... ...+.++.+|++|.+++.++++.+
T Consensus 4 ~~~k~vlVTGas~gIG~ala~~La~~G~~Vv~~~r~~~~----l~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~ 79 (275)
T PRK05876 4 FPGRGAVITGGASGIGLATGTEFARRGARVVLGDVDKPG----LRQAVNHLRAEGFDVHGVMCDVRHREEVTHLADEAFR 79 (275)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHH----HHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHH
Confidence 578899999999999999999999999999999986432 2222222111 235788999999999999888764
Q ss_pred ---CccEEEEcccccChh----hhccChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEEcCccccCCCCCCCCCCCC
Q 012176 193 ---PFTHVLHLAAQAGVR----YAMQNPQSYVASNIAGFVNLLEVCK----SVNPQPSIVWASSSSVYGLNTQVPFSESH 261 (469)
Q Consensus 193 ---~~d~Vih~Aa~~~~~----~~~~~~~~~~~~Nv~~~~~ll~aa~----~~~~~~~~V~~SS~~vyg~~~~~~~~E~~ 261 (469)
++|+||||||..... ...++.+..+++|+.++.++++++. +.+..++||++||...+.+.
T Consensus 80 ~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~p~m~~~~~~g~iv~isS~~~~~~~--------- 150 (275)
T PRK05876 80 LLGHVDVVFSNAGIVVGGPIVEMTHDDWRWVIDVDLWGSIHTVEAFLPRLLEQGTGGHVVFTASFAGLVPN--------- 150 (275)
T ss_pred HcCCCCEEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCCEEEEeCChhhccCC---------
Confidence 579999999974322 2234456788999999999998864 34434589999998776432
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceEe
Q 012176 262 RTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARD 338 (469)
Q Consensus 262 ~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 338 (469)
.+...|+.+|.+.+.+.+.++.++ |+++++++||.+.++........ .............. +......+
T Consensus 151 ---~~~~~Y~asK~a~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~--~~~~~~~~~~~~~~---~~~~~~~~ 222 (275)
T PRK05876 151 ---AGLGAYGVAKYGVVGLAETLAREVTADGIGVSVLCPMVVETNLVANSERI--RGAACAQSSTTGSP---GPLPLQDD 222 (275)
T ss_pred ---CCCchHHHHHHHHHHHHHHHHHHhhhcCcEEEEEEeCccccccccchhhh--cCcccccccccccc---cccccccc
Confidence 345789999999777777776553 89999999999988743321000 00000001111111 22344567
Q ss_pred cccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCCcccHHHHHHHHHHHhCC
Q 012176 339 FTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNT 391 (469)
Q Consensus 339 ~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~~vt~~el~~~i~~~~g~ 391 (469)
+++++|+|++++.++.+. +.|.+.+ +.....+.+...+....
T Consensus 223 ~~~~~dva~~~~~ai~~~---------~~~~~~~--~~~~~~~~~~~~~~~~~ 264 (275)
T PRK05876 223 NLGVDDIAQLTADAILAN---------RLYVLPH--AASRASIRRRFERIDRT 264 (275)
T ss_pred CCCHHHHHHHHHHHHHcC---------CeEEecC--hhhHHHHHHHHHHHHHh
Confidence 899999999999999775 5555543 35566666666666543
|
|
| >PRK07774 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.7e-21 Score=186.57 Aligned_cols=226 Identities=16% Similarity=0.175 Sum_probs=166.2
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhc-cCCeEEEEecCCCHHHHHHhhccC--
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQ-KHQVFIVEGDLNDAPLLTKLFDVV-- 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~v~~v~~Dl~d~~~l~~~~~~~-- 192 (469)
.++|+|+||||+|+||.+++++|+++|++|++++|... ........... ..++.++.+|++|.++++++++..
T Consensus 4 ~~~k~vlItGasg~iG~~la~~l~~~g~~vi~~~r~~~----~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 79 (250)
T PRK07774 4 FDDKVAIVTGAAGGIGQAYAEALAREGASVVVADINAE----GAERVAKQIVADGGTAIAVQVDVSDPDSAKAMADATVS 79 (250)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHH----HHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHH
Confidence 56789999999999999999999999999999999543 11122222111 236788999999999988877643
Q ss_pred ---CccEEEEcccccCh-------hhhccChHHHHHHHHHHHHHHHHHHHhc----CCCCeEEEEcCccccCCCCCCCCC
Q 012176 193 ---PFTHVLHLAAQAGV-------RYAMQNPQSYVASNIAGFVNLLEVCKSV----NPQPSIVWASSSSVYGLNTQVPFS 258 (469)
Q Consensus 193 ---~~d~Vih~Aa~~~~-------~~~~~~~~~~~~~Nv~~~~~ll~aa~~~----~~~~~~V~~SS~~vyg~~~~~~~~ 258 (469)
++|+||||||.... ....+..+..+++|+.++.++++++... +. ++||++||.++|.
T Consensus 80 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~-~~iv~~sS~~~~~-------- 150 (250)
T PRK07774 80 AFGGIDYLVNNAAIYGGMKLDLLITVPWDYYKKFMSVNLDGALVCTRAVYKHMAKRGG-GAIVNQSSTAAWL-------- 150 (250)
T ss_pred HhCCCCEEEECCCCcCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCC-cEEEEEecccccC--------
Confidence 57999999997431 1223445578899999999999987653 33 3899999988763
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcc
Q 012176 259 ESHRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREV 335 (469)
Q Consensus 259 E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 335 (469)
+.+.|+.+|.+.|.+++.++.++ |+++++++||.+..+....... ..+.+.+.++.+...
T Consensus 151 -------~~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~pg~~~t~~~~~~~~-~~~~~~~~~~~~~~~--------- 213 (250)
T PRK07774 151 -------YSNFYGLAKVGLNGLTQQLARELGGMNIRVNAIAPGPIDTEATRTVTP-KEFVADMVKGIPLSR--------- 213 (250)
T ss_pred -------CccccHHHHHHHHHHHHHHHHHhCccCeEEEEEecCcccCccccccCC-HHHHHHHHhcCCCCC---------
Confidence 34679999999999999998775 7999999999998876543211 234444455444321
Q ss_pred eEecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCCccc
Q 012176 336 ARDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTSPVP 377 (469)
Q Consensus 336 ~~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~~vt 377 (469)
+.+++|++++++.++..... ...+++||+.++..++
T Consensus 214 ---~~~~~d~a~~~~~~~~~~~~---~~~g~~~~v~~g~~~~ 249 (250)
T PRK07774 214 ---MGTPEDLVGMCLFLLSDEAS---WITGQIFNVDGGQIIR 249 (250)
T ss_pred ---CcCHHHHHHHHHHHhChhhh---CcCCCEEEECCCeecc
Confidence 34689999999998876421 2346899999886543
|
|
| >PRK07067 sorbitol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.6e-22 Score=194.72 Aligned_cols=233 Identities=15% Similarity=0.107 Sum_probs=165.6
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccC---
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~--- 192 (469)
..+++|+||||+|+||.++++.|+++|++|++++|+.+ ........ + ...+..+.+|++|.++++++++..
T Consensus 4 l~~~~vlItGas~~iG~~ia~~l~~~G~~v~~~~r~~~----~~~~~~~~-~-~~~~~~~~~D~~~~~~~~~~~~~~~~~ 77 (257)
T PRK07067 4 LQGKVALLTGAASGIGEAVAERYLAEGARVVIADIKPA----RARLAALE-I-GPAAIAVSLDVTRQDSIDRIVAAAVER 77 (257)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEcCCHH----HHHHHHHH-h-CCceEEEEccCCCHHHHHHHHHHHHHH
Confidence 45789999999999999999999999999999998543 11111111 1 236889999999999998888753
Q ss_pred --CccEEEEcccccChh----hhccChHHHHHHHHHHHHHHHHHHHhc----CCCCeEEEEcCcc-ccCCCCCCCCCCCC
Q 012176 193 --PFTHVLHLAAQAGVR----YAMQNPQSYVASNIAGFVNLLEVCKSV----NPQPSIVWASSSS-VYGLNTQVPFSESH 261 (469)
Q Consensus 193 --~~d~Vih~Aa~~~~~----~~~~~~~~~~~~Nv~~~~~ll~aa~~~----~~~~~~V~~SS~~-vyg~~~~~~~~E~~ 261 (469)
++|+||||||..... ...++.+..+++|+.++.++++++... +..++||++||.. .++.
T Consensus 78 ~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~~~---------- 147 (257)
T PRK07067 78 FGGIDILFNNAALFDMAPILDISRDSYDRLFAVNVKGLFFLMQAVARHMVEQGRGGKIINMASQAGRRGE---------- 147 (257)
T ss_pred cCCCCEEEECCCcCCCCCcccCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhcCCCcEEEEeCCHHhCCCC----------
Confidence 679999999974322 223456678999999999999998643 2224899999954 3321
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeecceecCCCCCCChHHHHHHHHHc---CCceEEEeeCCCCcc
Q 012176 262 RTDQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQ---GKTIDVYKTQDDREV 335 (469)
Q Consensus 262 ~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~---g~~~~~~~~~~~~~~ 335 (469)
.+...|+.+|.+.+.+++.++.+ +|+++++|+||.|+++...... .++..... +...... +....
T Consensus 148 ---~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~i~pg~v~t~~~~~~~---~~~~~~~~~~~~~~~~~~---~~~~~ 218 (257)
T PRK07067 148 ---ALVSHYCATKAAVISYTQSAALALIRHGINVNAIAPGVVDTPMWDQVD---ALFARYENRPPGEKKRLV---GEAVP 218 (257)
T ss_pred ---CCCchhhhhHHHHHHHHHHHHHHhcccCeEEEEEeeCcccchhhhhhh---hhhhhccCCCHHHHHHHH---hhcCC
Confidence 34578999999999999988875 5899999999999997433210 00000000 0000011 12334
Q ss_pred eEecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCCcc
Q 012176 336 ARDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTSPV 376 (469)
Q Consensus 336 ~~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~~v 376 (469)
...+++++|+|++++.++..... ...|++|++.+++.+
T Consensus 219 ~~~~~~~~dva~~~~~l~s~~~~---~~~g~~~~v~gg~~~ 256 (257)
T PRK07067 219 LGRMGVPDDLTGMALFLASADAD---YIVAQTYNVDGGNWM 256 (257)
T ss_pred CCCccCHHHHHHHHHHHhCcccc---cccCcEEeecCCEeC
Confidence 56789999999999998876432 245699999988754
|
|
| >KOG2774 consensus NAD dependent epimerase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.5e-22 Score=182.26 Aligned_cols=307 Identities=18% Similarity=0.220 Sum_probs=232.6
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHC-CC-cEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCC
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKR-GD-GVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVP 193 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~-G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~ 193 (469)
....+|||||+-|.+|..++..|..+ |. .|+..+..+. .+...+ .--++..|+.|...+++++-+.+
T Consensus 42 ~~~PrvLITG~LGQLG~~~A~LLR~~yGs~~VILSDI~KP---------p~~V~~--~GPyIy~DILD~K~L~eIVVn~R 110 (366)
T KOG2774|consen 42 QKAPRVLITGSLGQLGRGLASLLRYMYGSECVILSDIVKP---------PANVTD--VGPYIYLDILDQKSLEEIVVNKR 110 (366)
T ss_pred CCCCeEEEecchHHHhHHHHHHHHHHhCCccEehhhccCC---------chhhcc--cCCchhhhhhccccHHHhhcccc
Confidence 34568999999999999999999876 65 4555543221 222222 23467789999999999999989
Q ss_pred ccEEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcCccccCCCCCCCCCCCCCCCCCCChHHHH
Q 012176 194 FTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAAT 273 (469)
Q Consensus 194 ~d~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y~~s 273 (469)
+|-+||..+..+. ..+.+.....++|+.|+.|+++.|++++. ++...|++++||+.....-+.+.....|...||.+
T Consensus 111 IdWL~HfSALLSA-vGE~NVpLA~~VNI~GvHNil~vAa~~kL--~iFVPSTIGAFGPtSPRNPTPdltIQRPRTIYGVS 187 (366)
T KOG2774|consen 111 IDWLVHFSALLSA-VGETNVPLALQVNIRGVHNILQVAAKHKL--KVFVPSTIGAFGPTSPRNPTPDLTIQRPRTIYGVS 187 (366)
T ss_pred cceeeeHHHHHHH-hcccCCceeeeecchhhhHHHHHHHHcCe--eEeecccccccCCCCCCCCCCCeeeecCceeechh
Confidence 9999999886321 23456667788999999999999999987 68888999999988665444444444788999999
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEeecceec---CCC-CCCChHHHHHHHHHcCCceEEEeeCCCCcceEecccHHHHHHHH
Q 012176 274 KKAGEEIAHTYNHIYGLALTGLRFFTVYG---PWG-RPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGC 349 (469)
Q Consensus 274 K~~~E~~~~~~~~~~gi~~~ilRp~~v~G---p~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~~~ 349 (469)
|..+|.+-+.+.+++|+.+.++|++.++. |++ ..+..+..|..+..+|+.- .+ -..+.+....|.+||-.++
T Consensus 188 KVHAEL~GEy~~hrFg~dfr~~rfPg~is~~~pgggttdya~A~f~~Al~~gk~t-Cy---lrpdtrlpmmy~~dc~~~~ 263 (366)
T KOG2774|consen 188 KVHAELLGEYFNHRFGVDFRSMRFPGIISATKPGGGTTDYAIAIFYDALQKGKHT-CY---LRPDTRLPMMYDTDCMASV 263 (366)
T ss_pred HHHHHHHHHHHHhhcCccceecccCcccccCCCCCCcchhHHHHHHHHHHcCCcc-cc---cCCCccCceeehHHHHHHH
Confidence 99999999999999999999999888775 333 3445556666777777644 33 3378889999999999999
Q ss_pred HHHhccCCCCCCCCCceEEEeCCCCcccHHHHHHHHHHHhCC-CccceeecCCCCCCCCcccCChHHHHHhcCCCccCcH
Q 012176 350 VGATGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNT-KAKKHVIRMPRNGDVPYTHANVSLAYKDFGYKPTTDL 428 (469)
Q Consensus 350 ~~~~~~~~~~~~~~~~~iyni~~~~~vt~~el~~~i~~~~g~-~~~~~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~~l 428 (469)
+..+..+.. +...++||+++-. +|..|++..+.+++.. +..+....-....|..-..+|.+.++++..|+-++.+
T Consensus 264 ~~~~~a~~~---~lkrr~ynvt~~s-ftpee~~~~~~~~~p~~~i~y~~~srq~iad~wp~~~dds~ar~~wh~~h~~~l 339 (366)
T KOG2774|consen 264 IQLLAADSQ---SLKRRTYNVTGFS-FTPEEIADAIRRVMPGFEIDYDICTRQSIADSWPMSLDDSEARTEWHEKHSLHL 339 (366)
T ss_pred HHHHhCCHH---Hhhhheeeeceec-cCHHHHHHHHHhhCCCceeecccchhhhhhhhcccccCchhHhhHHHHhhhhhH
Confidence 999877643 3345999998854 9999999999998853 2222111111234555668999999999999999988
Q ss_pred HHHHHHHHHHHHHHcC
Q 012176 429 AAGLRKFVKWYVSYYG 444 (469)
Q Consensus 429 ~~~l~~~v~~~~~~~~ 444 (469)
...+.-++...++++.
T Consensus 340 ~~~i~~~i~~~~~n~~ 355 (366)
T KOG2774|consen 340 LSIISTVVAVHKSNLK 355 (366)
T ss_pred HHHHHHHHHHHHhhhh
Confidence 8888888887777665
|
|
| >PRK12429 3-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=8.4e-22 Score=189.43 Aligned_cols=229 Identities=18% Similarity=0.119 Sum_probs=160.2
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhh-ccCCeEEEEecCCCHHHHHHhhccC--
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLL-QKHQVFIVEGDLNDAPLLTKLFDVV-- 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~v~~v~~Dl~d~~~l~~~~~~~-- 192 (469)
+.+++|+||||+|+||.+++++|+++|++|++++|+..... ....... ...++.++.+|++|++++.++++..
T Consensus 2 ~~~~~vlItG~sg~iG~~la~~l~~~g~~v~~~~r~~~~~~----~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 77 (258)
T PRK12429 2 LKGKVALVTGAASGIGLEIALALAKEGAKVVIADLNDEAAA----AAAEALQKAGGKAIGVAMDVTDEEAINAGIDYAVE 77 (258)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHH----HHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHH
Confidence 35689999999999999999999999999999999654221 1111111 1346889999999999998888753
Q ss_pred ---CccEEEEcccccChhh----hccChHHHHHHHHHHHHHHHHH----HHhcCCCCeEEEEcCccccCCCCCCCCCCCC
Q 012176 193 ---PFTHVLHLAAQAGVRY----AMQNPQSYVASNIAGFVNLLEV----CKSVNPQPSIVWASSSSVYGLNTQVPFSESH 261 (469)
Q Consensus 193 ---~~d~Vih~Aa~~~~~~----~~~~~~~~~~~Nv~~~~~ll~a----a~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~ 261 (469)
++|+|||+||...... ..+..+..++.|+.++..+++. +++.+.+ +||++||...+.+.
T Consensus 78 ~~~~~d~vi~~a~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~-~iv~iss~~~~~~~--------- 147 (258)
T PRK12429 78 TFGGVDILVNNAGIQHVAPIEDFPTEKWKKMIAIMLDGAFLTTKAALPIMKAQGGG-RIINMASVHGLVGS--------- 147 (258)
T ss_pred HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHhhcchhhHHHHHHHHHHHHhcCCe-EEEEEcchhhccCC---------
Confidence 5799999999744321 2233456788999995555554 4455554 99999997655322
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCCCCChHHHHHHHHHc--CCce-----EEEeeCC
Q 012176 262 RTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQ--GKTI-----DVYKTQD 331 (469)
Q Consensus 262 ~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~--g~~~-----~~~~~~~ 331 (469)
.+.+.|+.+|.+.+.+.+.++.++ +++++++|||.+++|..... +..... +.+. ..+ .
T Consensus 148 ---~~~~~y~~~k~a~~~~~~~l~~~~~~~~i~v~~~~pg~v~~~~~~~~------~~~~~~~~~~~~~~~~~~~~---~ 215 (258)
T PRK12429 148 ---AGKAAYVSAKHGLIGLTKVVALEGATHGVTVNAICPGYVDTPLVRKQ------IPDLAKERGISEEEVLEDVL---L 215 (258)
T ss_pred ---CCcchhHHHHHHHHHHHHHHHHHhcccCeEEEEEecCCCcchhhhhh------hhhhccccCCChHHHHHHHH---h
Confidence 345789999999999999887653 79999999999999853311 111110 0000 000 1
Q ss_pred CCcceEecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCC
Q 012176 332 DREVARDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNT 373 (469)
Q Consensus 332 ~~~~~~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~ 373 (469)
.....+.+++++|+|++++.++..... ...+++|++.++
T Consensus 216 ~~~~~~~~~~~~d~a~~~~~l~~~~~~---~~~g~~~~~~~g 254 (258)
T PRK12429 216 PLVPQKRFTTVEEIADYALFLASFAAK---GVTGQAWVVDGG 254 (258)
T ss_pred ccCCccccCCHHHHHHHHHHHcCcccc---CccCCeEEeCCC
Confidence 122345799999999999999876432 234689999876
|
|
| >TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.89 E-value=8.8e-22 Score=188.94 Aligned_cols=231 Identities=16% Similarity=0.106 Sum_probs=160.8
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhh-ccCCeEEEEecCCCHHHHHHhhccC----
Q 012176 118 GMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLL-QKHQVFIVEGDLNDAPLLTKLFDVV---- 192 (469)
Q Consensus 118 ~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~v~~v~~Dl~d~~~l~~~~~~~---- 192 (469)
+++||||||+|+||+++++.|+++|++|++++|+... ......... ...++.++.+|+.|.++++++++..
T Consensus 1 ~~~vlItGa~g~lG~~l~~~l~~~g~~v~~~~r~~~~----~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 76 (255)
T TIGR01963 1 GKTALVTGAASGIGLAIALALAAAGANVVVNDLGEAG----AEAAAKVATDAGGSVIYLVADVTKEDEIADMIAAAAAEF 76 (255)
T ss_pred CCEEEEcCCcchHHHHHHHHHHHCCCEEEEEeCCHHH----HHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHhc
Confidence 3689999999999999999999999999999995431 111111111 1246889999999999887766543
Q ss_pred -CccEEEEcccccChh----hhccChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEEcCccccCCCCCCCCCCCCCC
Q 012176 193 -PFTHVLHLAAQAGVR----YAMQNPQSYVASNIAGFVNLLEVC----KSVNPQPSIVWASSSSVYGLNTQVPFSESHRT 263 (469)
Q Consensus 193 -~~d~Vih~Aa~~~~~----~~~~~~~~~~~~Nv~~~~~ll~aa----~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~ 263 (469)
++|+|||+||..... ....+.+..++.|+.++..+++++ ++.+.+ +||++||...+.+.
T Consensus 77 ~~~d~vi~~a~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~-~~v~~ss~~~~~~~----------- 144 (255)
T TIGR01963 77 GGLDILVNNAGIQHVAPIEEFPPEDWDRIIAIMLTSAFHTIRAALPHMKKQGWG-RIINIASAHGLVAS----------- 144 (255)
T ss_pred CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCe-EEEEEcchhhcCCC-----------
Confidence 479999999975432 122344567889999988888876 455655 99999997655432
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEe----eCCCCcce
Q 012176 264 DQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYK----TQDDREVA 336 (469)
Q Consensus 264 ~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~----~~~~~~~~ 336 (469)
.....|+.+|.+.|.+++.++.+ .+++++++||+.+++|.... .+........+.... .-......
T Consensus 145 -~~~~~y~~sk~a~~~~~~~~~~~~~~~~i~v~~i~pg~v~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (255)
T TIGR01963 145 -PFKSAYVAAKHGLIGLTKVLALEVAAHGITVNAICPGYVRTPLVEK------QIADQAKTRGIPEEQVIREVMLPGQPT 217 (255)
T ss_pred -CCCchhHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCccccHHHHH------HHHhhhcccCCCchHHHHHHHHccCcc
Confidence 22467999999999999888765 38999999999999974221 111111111110000 00113455
Q ss_pred EecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCC
Q 012176 337 RDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTS 374 (469)
Q Consensus 337 ~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~ 374 (469)
+++++++|+|++++.++..... ...+++|++.++.
T Consensus 218 ~~~~~~~d~a~~~~~~~~~~~~---~~~g~~~~~~~g~ 252 (255)
T TIGR01963 218 KRFVTVDEVAETALFLASDAAA---GITGQAIVLDGGW 252 (255)
T ss_pred ccCcCHHHHHHHHHHHcCcccc---CccceEEEEcCcc
Confidence 6899999999999999876422 2346899998764
|
This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species. |
| >PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.1e-21 Score=200.05 Aligned_cols=242 Identities=14% Similarity=0.078 Sum_probs=167.5
Q ss_pred CCCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhh------ccCCeEEEEecCCCHHHHHH
Q 012176 114 RRPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLL------QKHQVFIVEGDLNDAPLLTK 187 (469)
Q Consensus 114 ~~~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~------~~~~v~~v~~Dl~d~~~l~~ 187 (469)
...++++||||||+|+||++++++|+++|++|++++|+.+.............+ ...+++++.+|+.|.+++.+
T Consensus 76 ~~~~gKvVLVTGATGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI~~ 155 (576)
T PLN03209 76 DTKDEDLAFVAGATGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQIGP 155 (576)
T ss_pred ccCCCCEEEEECCCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHHHH
Confidence 446789999999999999999999999999999999965421111000000000 01358899999999999999
Q ss_pred hhccCCccEEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcCccccCCCCCCCCCCCCCCCCCC
Q 012176 188 LFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPA 267 (469)
Q Consensus 188 ~~~~~~~d~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~ 267 (469)
++.++ |+||||+|.... ...+....+++|+.|+.+++++|+..+++ +||++||.+++... +.+.. . ...
T Consensus 156 aLggi--DiVVn~AG~~~~--~v~d~~~~~~VN~~Gt~nLl~Aa~~agVg-RIV~VSSiga~~~g----~p~~~-~-~sk 224 (576)
T PLN03209 156 ALGNA--SVVICCIGASEK--EVFDVTGPYRIDYLATKNLVDAATVAKVN-HFILVTSLGTNKVG----FPAAI-L-NLF 224 (576)
T ss_pred HhcCC--CEEEEccccccc--cccchhhHHHHHHHHHHHHHHHHHHhCCC-EEEEEccchhcccC----ccccc-h-hhH
Confidence 99887 999999986431 11245567889999999999999999886 99999998763111 11111 1 234
Q ss_pred ChHHHHHHHHHHHHHHHHHHhCCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceEecccHHHHHH
Q 012176 268 SLYAATKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVK 347 (469)
Q Consensus 268 ~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~ 347 (469)
..|...|..+|..+.. +||++++||||.++++...... .+. +.+.. + .......+..+|||+
T Consensus 225 ~~~~~~KraaE~~L~~----sGIrvTIVRPG~L~tp~d~~~~----------t~~-v~~~~--~-d~~~gr~isreDVA~ 286 (576)
T PLN03209 225 WGVLCWKRKAEEALIA----SGLPYTIVRPGGMERPTDAYKE----------THN-LTLSE--E-DTLFGGQVSNLQVAE 286 (576)
T ss_pred HHHHHHHHHHHHHHHH----cCCCEEEEECCeecCCcccccc----------ccc-eeecc--c-cccCCCccCHHHHHH
Confidence 5678888888887764 5999999999999987443210 011 11110 1 111223588999999
Q ss_pred HHHHHhccCCCCCCCCCceEEEeCCCCcccHHHHHHHHHHH
Q 012176 348 GCVGATGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENL 388 (469)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~iyni~~~~~vt~~el~~~i~~~ 388 (469)
+++.++.++. ...+.+|.+.++.......+.+++..+
T Consensus 287 vVvfLasd~~----as~~kvvevi~~~~~p~~~~~~~~~~i 323 (576)
T PLN03209 287 LMACMAKNRR----LSYCKVVEVIAETTAPLTPMEELLAKI 323 (576)
T ss_pred HHHHHHcCch----hccceEEEEEeCCCCCCCCHHHHHHhc
Confidence 9999988663 244589999887644555555555543
|
|
| >PRK07806 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=8.4e-22 Score=188.56 Aligned_cols=231 Identities=15% Similarity=0.109 Sum_probs=159.7
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhh-ccCCeEEEEecCCCHHHHHHhhccC--
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLL-QKHQVFIVEGDLNDAPLLTKLFDVV-- 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~v~~v~~Dl~d~~~l~~~~~~~-- 192 (469)
.++++++||||+|+||.+++++|+++|++|++++|+... .......... ...++.++.+|++|+++++++++..
T Consensus 4 ~~~k~vlItGasggiG~~l~~~l~~~G~~V~~~~r~~~~---~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 80 (248)
T PRK07806 4 LPGKTALVTGSSRGIGADTAKILAGAGAHVVVNYRQKAP---RANKVVAEIEAAGGRASAVGADLTDEESVAALMDTARE 80 (248)
T ss_pred CCCcEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCCchH---hHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHH
Confidence 567899999999999999999999999999999985431 1111111111 1236788999999999998888642
Q ss_pred ---CccEEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCC-CCeEEEEcCccccCCCCCCCCCCCCCCCCCCC
Q 012176 193 ---PFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNP-QPSIVWASSSSVYGLNTQVPFSESHRTDQPAS 268 (469)
Q Consensus 193 ---~~d~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~-~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~ 268 (469)
++|+||||||.... ...++...+++|+.++.++++++..... .++||++||....... ..+.. ...+
T Consensus 81 ~~~~~d~vi~~ag~~~~--~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv~isS~~~~~~~----~~~~~---~~~~ 151 (248)
T PRK07806 81 EFGGLDALVLNASGGME--SGMDEDYAMRLNRDAQRNLARAALPLMPAGSRVVFVTSHQAHFIP----TVKTM---PEYE 151 (248)
T ss_pred hCCCCcEEEECCCCCCC--CCCCcceeeEeeeHHHHHHHHHHHhhccCCceEEEEeCchhhcCc----cccCC---cccc
Confidence 57999999986321 2234567788999999999999986522 2489999995432111 00111 2256
Q ss_pred hHHHHHHHHHHHHHHHHHH---hCCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceEecccHHHH
Q 012176 269 LYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDV 345 (469)
Q Consensus 269 ~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dv 345 (469)
.|+.+|.++|.+++.++.+ .++++++++|+.+-++... .++.. ..+-.+. ........+++++|+
T Consensus 152 ~Y~~sK~a~e~~~~~l~~~~~~~~i~v~~v~pg~~~~~~~~------~~~~~---~~~~~~~---~~~~~~~~~~~~~dv 219 (248)
T PRK07806 152 PVARSKRAGEDALRALRPELAEKGIGFVVVSGDMIEGTVTA------TLLNR---LNPGAIE---ARREAAGKLYTVSEF 219 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCeEEEEeCCccccCchhh------hhhcc---CCHHHHH---HHHhhhcccCCHHHH
Confidence 8999999999999999865 4799999999887765211 11110 0000000 000112468999999
Q ss_pred HHHHHHHhccCCCCCCCCCceEEEeCCCCc
Q 012176 346 VKGCVGATGSGGKKRGPAQLRVYNLGNTSP 375 (469)
Q Consensus 346 a~~~~~~~~~~~~~~~~~~~~iyni~~~~~ 375 (469)
|++++.+++.. ...|++|++++++.
T Consensus 220 a~~~~~l~~~~-----~~~g~~~~i~~~~~ 244 (248)
T PRK07806 220 AAEVARAVTAP-----VPSGHIEYVGGADY 244 (248)
T ss_pred HHHHHHHhhcc-----ccCccEEEecCccc
Confidence 99999999854 34569999999874
|
|
| >PRK06128 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=5e-21 Score=188.82 Aligned_cols=232 Identities=14% Similarity=0.103 Sum_probs=166.4
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhh-ccCCeEEEEecCCCHHHHHHhhccC--
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLL-QKHQVFIVEGDLNDAPLLTKLFDVV-- 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~v~~v~~Dl~d~~~l~~~~~~~-- 192 (469)
..+|+||||||+|+||+++++.|+++|++|++..+..+.. .......... ...++.++.+|++|.++++++++..
T Consensus 53 l~~k~vlITGas~gIG~~~a~~l~~~G~~V~i~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~ 130 (300)
T PRK06128 53 LQGRKALITGADSGIGRATAIAFAREGADIALNYLPEEEQ--DAAEVVQLIQAEGRKAVALPGDLKDEAFCRQLVERAVK 130 (300)
T ss_pred cCCCEEEEecCCCcHHHHHHHHHHHcCCEEEEEeCCcchH--HHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHHHH
Confidence 5678999999999999999999999999999887643211 1111111111 1336788999999999988888753
Q ss_pred ---CccEEEEcccccCh-----hhhccChHHHHHHHHHHHHHHHHHHHhcC-CCCeEEEEcCccccCCCCCCCCCCCCCC
Q 012176 193 ---PFTHVLHLAAQAGV-----RYAMQNPQSYVASNIAGFVNLLEVCKSVN-PQPSIVWASSSSVYGLNTQVPFSESHRT 263 (469)
Q Consensus 193 ---~~d~Vih~Aa~~~~-----~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~-~~~~~V~~SS~~vyg~~~~~~~~E~~~~ 263 (469)
++|+||||||.... ....++++..+++|+.++..+++++...- ...+||++||...|...
T Consensus 131 ~~g~iD~lV~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~~sS~~~~~~~----------- 199 (300)
T PRK06128 131 ELGGLDILVNIAGKQTAVKDIADITTEQFDATFKTNVYAMFWLCKAAIPHLPPGASIINTGSIQSYQPS----------- 199 (300)
T ss_pred HhCCCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhcCcCCEEEEECCccccCCC-----------
Confidence 67999999996321 22345667899999999999999987532 12489999998887543
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceEecc
Q 012176 264 DQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFT 340 (469)
Q Consensus 264 ~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v 340 (469)
.....|+.+|.+.+.+++.++.+ .|+++++|+||.|.+|..............+....+ ...+.
T Consensus 200 -~~~~~Y~asK~a~~~~~~~la~el~~~gI~v~~v~PG~i~t~~~~~~~~~~~~~~~~~~~~p------------~~r~~ 266 (300)
T PRK06128 200 -PTLLDYASTKAAIVAFTKALAKQVAEKGIRVNAVAPGPVWTPLQPSGGQPPEKIPDFGSETP------------MKRPG 266 (300)
T ss_pred -CCchhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEEECcCcCCCcccCCCCHHHHHHHhcCCC------------CCCCc
Confidence 23456999999999999999876 489999999999999854321111222222222222 12356
Q ss_pred cHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCCcc
Q 012176 341 YIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTSPV 376 (469)
Q Consensus 341 ~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~~v 376 (469)
..+|++.+++.++..... -..|++|++.++..+
T Consensus 267 ~p~dva~~~~~l~s~~~~---~~~G~~~~v~gg~~~ 299 (300)
T PRK06128 267 QPVEMAPLYVLLASQESS---YVTGEVFGVTGGLLL 299 (300)
T ss_pred CHHHHHHHHHHHhCcccc---CccCcEEeeCCCEeC
Confidence 889999999988765422 234689999988654
|
|
| >PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.2e-22 Score=182.56 Aligned_cols=183 Identities=28% Similarity=0.329 Sum_probs=143.3
Q ss_pred EEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCccEEEEc
Q 012176 121 VLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTHVLHL 200 (469)
Q Consensus 121 VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~d~Vih~ 200 (469)
|+|+||||++|++++++|+++|++|+++.|+.+. ... ..+++++.+|+.|++.+.++++++ |+||++
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~-------~~~----~~~~~~~~~d~~d~~~~~~al~~~--d~vi~~ 67 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPSK-------AED----SPGVEIIQGDLFDPDSVKAALKGA--DAVIHA 67 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGGG-------HHH----CTTEEEEESCTTCHHHHHHHHTTS--SEEEEC
T ss_pred eEEECCCChHHHHHHHHHHHCCCEEEEEecCchh-------ccc----ccccccceeeehhhhhhhhhhhhc--chhhhh
Confidence 7999999999999999999999999999996541 111 569999999999999999999988 999999
Q ss_pred ccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcCccccCCCCCCCCCCCCCCCCCCChHHHHHHHHHHH
Q 012176 201 AAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEI 280 (469)
Q Consensus 201 Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y~~sK~~~E~~ 280 (469)
++.... +...+.+++++|++++++ ++|++|+.++|+........+..+ ....|...|..+|+.
T Consensus 68 ~~~~~~-------------~~~~~~~~~~a~~~~~~~-~~v~~s~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~e~~ 130 (183)
T PF13460_consen 68 AGPPPK-------------DVDAAKNIIEAAKKAGVK-RVVYLSSAGVYRDPPGLFSDEDKP---IFPEYARDKREAEEA 130 (183)
T ss_dssp CHSTTT-------------HHHHHHHHHHHHHHTTSS-EEEEEEETTGTTTCTSEEEGGTCG---GGHHHHHHHHHHHHH
T ss_pred hhhhcc-------------cccccccccccccccccc-cceeeeccccCCCCCccccccccc---chhhhHHHHHHHHHH
Confidence 976321 277889999999999987 999999999997543321111111 125688999999887
Q ss_pred HHHHHHHhCCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceEecccHHHHHHHHHHHhcc
Q 012176 281 AHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGATGS 355 (469)
Q Consensus 281 ~~~~~~~~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~~~~~~~~~ 355 (469)
+++ .+++++++||+.+||+.... ..+.. .++....++|+.+|+|++++.++++
T Consensus 131 ~~~----~~~~~~ivrp~~~~~~~~~~----------------~~~~~--~~~~~~~~~i~~~DvA~~~~~~l~~ 183 (183)
T PF13460_consen 131 LRE----SGLNWTIVRPGWIYGNPSRS----------------YRLIK--EGGPQGVNFISREDVAKAIVEALEN 183 (183)
T ss_dssp HHH----STSEEEEEEESEEEBTTSSS----------------EEEES--STSTTSHCEEEHHHHHHHHHHHHH-
T ss_pred HHh----cCCCEEEEECcEeEeCCCcc----------------eeEEe--ccCCCCcCcCCHHHHHHHHHHHhCC
Confidence 753 49999999999999985331 11111 1345566999999999999998864
|
... |
| >PRK07523 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.6e-21 Score=186.15 Aligned_cols=230 Identities=15% Similarity=0.090 Sum_probs=164.8
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhc-cCCeEEEEecCCCHHHHHHhhccC--
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQ-KHQVFIVEGDLNDAPLLTKLFDVV-- 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~v~~v~~Dl~d~~~l~~~~~~~-- 192 (469)
.++|+||||||+|+||.+++++|+++|++|++++|+... .......... ..++.++.+|++|.++++++++.+
T Consensus 8 ~~~k~vlItGa~g~iG~~ia~~l~~~G~~V~~~~r~~~~----~~~~~~~i~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 83 (255)
T PRK07523 8 LTGRRALVTGSSQGIGYALAEGLAQAGAEVILNGRDPAK----LAAAAESLKGQGLSAHALAFDVTDHDAVRAAIDAFEA 83 (255)
T ss_pred CCCCEEEEECCcchHHHHHHHHHHHcCCEEEEEeCCHHH----HHHHHHHHHhcCceEEEEEccCCCHHHHHHHHHHHHH
Confidence 567899999999999999999999999999999985431 1111111111 235888999999999999988764
Q ss_pred ---CccEEEEcccccChhh----hccChHHHHHHHHHHHHHHHHHHHhc----CCCCeEEEEcCccccCCCCCCCCCCCC
Q 012176 193 ---PFTHVLHLAAQAGVRY----AMQNPQSYVASNIAGFVNLLEVCKSV----NPQPSIVWASSSSVYGLNTQVPFSESH 261 (469)
Q Consensus 193 ---~~d~Vih~Aa~~~~~~----~~~~~~~~~~~Nv~~~~~ll~aa~~~----~~~~~~V~~SS~~vyg~~~~~~~~E~~ 261 (469)
++|+|||+||...... ..+..+..+++|+.++.++++++.+. +. ++||++||...+.+.
T Consensus 84 ~~~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~-g~iv~iss~~~~~~~--------- 153 (255)
T PRK07523 84 EIGPIDILVNNAGMQFRTPLEDFPADAFERLLRTNISSVFYVGQAVARHMIARGA-GKIINIASVQSALAR--------- 153 (255)
T ss_pred hcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCC-eEEEEEccchhccCC---------
Confidence 4799999999754321 23344678889999999999987653 33 389999996543211
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceEe
Q 012176 262 RTDQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARD 338 (469)
Q Consensus 262 ~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 338 (469)
.....|+.+|.+.|.+++.++.+ +|++++++|||.+.++..........+...+....++ ..
T Consensus 154 ---~~~~~y~~sK~a~~~~~~~~a~e~~~~gi~v~~i~pg~~~t~~~~~~~~~~~~~~~~~~~~~~------------~~ 218 (255)
T PRK07523 154 ---PGIAPYTATKGAVGNLTKGMATDWAKHGLQCNAIAPGYFDTPLNAALVADPEFSAWLEKRTPA------------GR 218 (255)
T ss_pred ---CCCccHHHHHHHHHHHHHHHHHHhhHhCeEEEEEEECcccCchhhhhccCHHHHHHHHhcCCC------------CC
Confidence 34578999999999999999864 5899999999999998533111111222222222221 23
Q ss_pred cccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCCccc
Q 012176 339 FTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTSPVP 377 (469)
Q Consensus 339 ~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~~vt 377 (469)
+..++|+|.+++.++..... ...|+++++.++..++
T Consensus 219 ~~~~~dva~~~~~l~~~~~~---~~~G~~i~~~gg~~~~ 254 (255)
T PRK07523 219 WGKVEELVGACVFLASDASS---FVNGHVLYVDGGITAS 254 (255)
T ss_pred CcCHHHHHHHHHHHcCchhc---CccCcEEEECCCeecc
Confidence 66799999999999875422 2346899998876543
|
|
| >PRK12827 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.7e-20 Score=179.20 Aligned_cols=226 Identities=15% Similarity=0.131 Sum_probs=162.7
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhc-cCCeEEEEecCCCHHHHHHhhcc---
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQ-KHQVFIVEGDLNDAPLLTKLFDV--- 191 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~v~~v~~Dl~d~~~l~~~~~~--- 191 (469)
.++|+++||||+|+||+++++.|+++|++|++++|......+........... ...+.++.+|+.|.+.++++++.
T Consensus 4 ~~~~~ilItGasg~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 83 (249)
T PRK12827 4 LDSRRVLITGGSGGLGRAIAVRLAADGADVIVLDIHPMRGRAEADAVAAGIEAAGGKALGLAFDVRDFAATRAALDAGVE 83 (249)
T ss_pred cCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEcCcccccHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHH
Confidence 45689999999999999999999999999999887543322222222222111 23688999999999999888764
Q ss_pred --CCccEEEEcccccCh----hhhccChHHHHHHHHHHHHHHHHHHH-----hcCCCCeEEEEcCccccCCCCCCCCCCC
Q 012176 192 --VPFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCK-----SVNPQPSIVWASSSSVYGLNTQVPFSES 260 (469)
Q Consensus 192 --~~~d~Vih~Aa~~~~----~~~~~~~~~~~~~Nv~~~~~ll~aa~-----~~~~~~~~V~~SS~~vyg~~~~~~~~E~ 260 (469)
.++|+|||+||.... ....++.+..+++|+.++.++++++. +.+.. +||++||...+.+.
T Consensus 84 ~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~-~iv~~sS~~~~~~~-------- 154 (249)
T PRK12827 84 EFGRLDILVNNAGIATDAAFAELSIEEWDDVIDVNLDGFFNVTQAALPPMIRARRGG-RIVNIASVAGVRGN-------- 154 (249)
T ss_pred HhCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCCCe-EEEEECCchhcCCC--------
Confidence 257999999997542 22334456788999999999999987 34444 89999997665432
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceE
Q 012176 261 HRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVAR 337 (469)
Q Consensus 261 ~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 337 (469)
.+...|+.+|.+.+.+++.++.++ +++++++|||.++++........ ..+....+. .
T Consensus 155 ----~~~~~y~~sK~a~~~~~~~l~~~~~~~~i~~~~i~pg~v~t~~~~~~~~~----~~~~~~~~~------------~ 214 (249)
T PRK12827 155 ----RGQVNYAASKAGLIGLTKTLANELAPRGITVNAVAPGAINTPMADNAAPT----EHLLNPVPV------------Q 214 (249)
T ss_pred ----CCCchhHHHHHHHHHHHHHHHHHhhhhCcEEEEEEECCcCCCcccccchH----HHHHhhCCC------------c
Confidence 345679999999999999888663 89999999999999865432211 122222221 1
Q ss_pred ecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCC
Q 012176 338 DFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNT 373 (469)
Q Consensus 338 ~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~ 373 (469)
.+.+++|++++++.++..... ...|+++++.++
T Consensus 215 ~~~~~~~va~~~~~l~~~~~~---~~~g~~~~~~~g 247 (249)
T PRK12827 215 RLGEPDEVAALVAFLVSDAAS---YVTGQVIPVDGG 247 (249)
T ss_pred CCcCHHHHHHHHHHHcCcccC---CccCcEEEeCCC
Confidence 245789999999988865422 344688888765
|
|
| >PRK07074 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.8e-20 Score=180.34 Aligned_cols=236 Identities=19% Similarity=0.102 Sum_probs=170.2
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccC-----
Q 012176 118 GMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV----- 192 (469)
Q Consensus 118 ~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~----- 192 (469)
+++++||||+|+||.++++.|+++|++|++++|+... ....... ....++.++.+|+.|.+++.++++..
T Consensus 2 ~k~ilItGat~~iG~~la~~L~~~g~~v~~~~r~~~~----~~~~~~~-~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 76 (257)
T PRK07074 2 KRTALVTGAAGGIGQALARRFLAAGDRVLALDIDAAA----LAAFADA-LGDARFVPVACDLTDAASLAAALANAAAERG 76 (257)
T ss_pred CCEEEEECCcchHHHHHHHHHHHCCCEEEEEeCCHHH----HHHHHHH-hcCCceEEEEecCCCHHHHHHHHHHHHHHcC
Confidence 4689999999999999999999999999999985431 1111111 12346889999999999998888753
Q ss_pred CccEEEEcccccChhh----hccChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEEcCccccCCCCCCCCCCCCCCC
Q 012176 193 PFTHVLHLAAQAGVRY----AMQNPQSYVASNIAGFVNLLEVCK----SVNPQPSIVWASSSSVYGLNTQVPFSESHRTD 264 (469)
Q Consensus 193 ~~d~Vih~Aa~~~~~~----~~~~~~~~~~~Nv~~~~~ll~aa~----~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~ 264 (469)
++|+|||++|...... ..+.....+++|+.++.++++++. +.+.. +||++||...+..
T Consensus 77 ~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~-~iv~~sS~~~~~~------------- 142 (257)
T PRK07074 77 PVDVLVANAGAARAASLHDTTPASWRADNALNLEAAYLCVEAVLEGMLKRSRG-AVVNIGSVNGMAA------------- 142 (257)
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCe-EEEEEcchhhcCC-------------
Confidence 5799999999743211 112234567899999999988873 34443 8999999654321
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCCCC-ChHHHHHHHHHcCCceEEEeeCCCCcceEecc
Q 012176 265 QPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPD-MAYFFFTKDILQGKTIDVYKTQDDREVARDFT 340 (469)
Q Consensus 265 ~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v 340 (469)
.....|+.+|.+.+.+++.++.++ |++++++|||.++++..... .....+....... ....+++
T Consensus 143 ~~~~~y~~sK~a~~~~~~~~a~~~~~~gi~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~~~------------~~~~~~~ 210 (257)
T PRK07074 143 LGHPAYSAAKAGLIHYTKLLAVEYGRFGIRANAVAPGTVKTQAWEARVAANPQVFEELKKW------------YPLQDFA 210 (257)
T ss_pred CCCcccHHHHHHHHHHHHHHHHHHhHhCeEEEEEEeCcCCcchhhcccccChHHHHHHHhc------------CCCCCCC
Confidence 112369999999999999998765 79999999999998753211 0112222222111 2235789
Q ss_pred cHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCCcccHHHHHHHHHH
Q 012176 341 YIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILEN 387 (469)
Q Consensus 341 ~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~~vt~~el~~~i~~ 387 (469)
+++|++++++.++..... ...|+++++.++......||.+.+.+
T Consensus 211 ~~~d~a~~~~~l~~~~~~---~~~g~~~~~~~g~~~~~~~~~~~~~~ 254 (257)
T PRK07074 211 TPDDVANAVLFLASPAAR---AITGVCLPVDGGLTAGNREMARTLTL 254 (257)
T ss_pred CHHHHHHHHHHHcCchhc---CcCCcEEEeCCCcCcCChhhhhhhcc
Confidence 999999999999865422 33468999999999999999988754
|
|
| >PRK12829 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1e-20 Score=182.67 Aligned_cols=236 Identities=17% Similarity=0.141 Sum_probs=159.8
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccC---
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~--- 192 (469)
.++++||||||+|+||+++++.|+++|++|++++|+.+ ........ ....++.++.+|++|++.+.++++..
T Consensus 9 ~~~~~vlItGa~g~iG~~~a~~L~~~g~~V~~~~r~~~----~~~~~~~~-~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 83 (264)
T PRK12829 9 LDGLRVLVTGGASGIGRAIAEAFAEAGARVHVCDVSEA----ALAATAAR-LPGAKVTATVADVADPAQVERVFDTAVER 83 (264)
T ss_pred cCCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHH----HHHHHHHH-HhcCceEEEEccCCCHHHHHHHHHHHHHH
Confidence 56789999999999999999999999999999998543 11111111 11226789999999999998888653
Q ss_pred --CccEEEEcccccCh-----hhhccChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEEcCccccCCCCCCCCCCCC
Q 012176 193 --PFTHVLHLAAQAGV-----RYAMQNPQSYVASNIAGFVNLLEVCK----SVNPQPSIVWASSSSVYGLNTQVPFSESH 261 (469)
Q Consensus 193 --~~d~Vih~Aa~~~~-----~~~~~~~~~~~~~Nv~~~~~ll~aa~----~~~~~~~~V~~SS~~vyg~~~~~~~~E~~ 261 (469)
++|+|||+||.... ....++....++.|+.++..+++++. ..+.+++||++||.+...+.
T Consensus 84 ~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~vv~~ss~~~~~~~--------- 154 (264)
T PRK12829 84 FGGLDVLVNNAGIAGPTGGIDEITPEQWEQTLAVNLNGQFYFARAAVPLLKASGHGGVIIALSSVAGRLGY--------- 154 (264)
T ss_pred hCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCeEEEEecccccccCC---------
Confidence 67999999997521 22334557889999999999998863 33432478888875432211
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEE-eeCCCCcceE
Q 012176 262 RTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVY-KTQDDREVAR 337 (469)
Q Consensus 262 ~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~ 337 (469)
.+...|+.+|.+.|.+++.++.+. +++++++|||.++||..... ....... .+...... ..........
T Consensus 155 ---~~~~~y~~~K~a~~~~~~~l~~~~~~~~i~~~~l~pg~v~~~~~~~~--~~~~~~~--~~~~~~~~~~~~~~~~~~~ 227 (264)
T PRK12829 155 ---PGRTPYAASKWAVVGLVKSLAIELGPLGIRVNAILPGIVRGPRMRRV--IEARAQQ--LGIGLDEMEQEYLEKISLG 227 (264)
T ss_pred ---CCCchhHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcCChHHHHH--hhhhhhc--cCCChhHHHHHHHhcCCCC
Confidence 234579999999999999988664 89999999999999854311 0000000 00000000 0000001123
Q ss_pred ecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCCc
Q 012176 338 DFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTSP 375 (469)
Q Consensus 338 ~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~~ 375 (469)
.+++++|+++++..++..... ...++.|++.++..
T Consensus 228 ~~~~~~d~a~~~~~l~~~~~~---~~~g~~~~i~~g~~ 262 (264)
T PRK12829 228 RMVEPEDIAATALFLASPAAR---YITGQAISVDGNVE 262 (264)
T ss_pred CCCCHHHHHHHHHHHcCcccc---CccCcEEEeCCCcc
Confidence 589999999999888754321 23568999998753
|
|
| >PRK12828 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=6.6e-21 Score=180.85 Aligned_cols=217 Identities=14% Similarity=0.067 Sum_probs=160.4
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccC---
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~--- 192 (469)
.++++||||||+|+||+++++.|+++|++|++++|+...... .. ..+...+++++.+|+.|.++++++++..
T Consensus 5 ~~~k~vlItGatg~iG~~la~~l~~~G~~v~~~~r~~~~~~~----~~-~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 79 (239)
T PRK12828 5 LQGKVVAITGGFGGLGRATAAWLAARGARVALIGRGAAPLSQ----TL-PGVPADALRIGGIDLVDPQAARRAVDEVNRQ 79 (239)
T ss_pred CCCCEEEEECCCCcHhHHHHHHHHHCCCeEEEEeCChHhHHH----HH-HHHhhcCceEEEeecCCHHHHHHHHHHHHHH
Confidence 567899999999999999999999999999999996532111 11 1122336788899999999998888753
Q ss_pred --CccEEEEcccccCh----hhhccChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEEcCccccCCCCCCCCCCCCC
Q 012176 193 --PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCK----SVNPQPSIVWASSSSVYGLNTQVPFSESHR 262 (469)
Q Consensus 193 --~~d~Vih~Aa~~~~----~~~~~~~~~~~~~Nv~~~~~ll~aa~----~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~ 262 (469)
++|+|||++|.... ....++....+++|+.++.++++++. +.+.+ +||++||...++..
T Consensus 80 ~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~-~iv~~sS~~~~~~~---------- 148 (239)
T PRK12828 80 FGRLDALVNIAGAFVWGTIADGDADTWDRMYGVNVKTTLNASKAALPALTASGGG-RIVNIGAGAALKAG---------- 148 (239)
T ss_pred hCCcCEEEECCcccCcCChhhCCHHHHHHHHHhhchhHHHHHHHHHHHHHhcCCC-EEEEECchHhccCC----------
Confidence 57999999986432 11233345678899999999998874 34544 99999998877533
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceEec
Q 012176 263 TDQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDF 339 (469)
Q Consensus 263 ~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 339 (469)
.+...|+.+|.+.+.+++.++.. ++++++++|||.++++...... . ......+
T Consensus 149 --~~~~~y~~sk~a~~~~~~~~a~~~~~~~i~~~~i~pg~v~~~~~~~~~-----------------~-----~~~~~~~ 204 (239)
T PRK12828 149 --PGMGAYAAAKAGVARLTEALAAELLDRGITVNAVLPSIIDTPPNRADM-----------------P-----DADFSRW 204 (239)
T ss_pred --CCcchhHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCcccCcchhhcC-----------------C-----chhhhcC
Confidence 24567999999999999887754 4899999999999997322110 0 0112237
Q ss_pred ccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCCc
Q 012176 340 TYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTSP 375 (469)
Q Consensus 340 v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~~ 375 (469)
++++|+|++++.++.+... ...|+.+++.++..
T Consensus 205 ~~~~dva~~~~~~l~~~~~---~~~g~~~~~~g~~~ 237 (239)
T PRK12828 205 VTPEQIAAVIAFLLSDEAQ---AITGASIPVDGGVA 237 (239)
T ss_pred CCHHHHHHHHHHHhCcccc---cccceEEEecCCEe
Confidence 9999999999999876421 23468899988753
|
|
| >PRK12746 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.4e-20 Score=179.08 Aligned_cols=227 Identities=14% Similarity=0.090 Sum_probs=158.6
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEE-eCCCCCCChhHHHHHHHhhc-cCCeEEEEecCCCHHHHHHhhccC-
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGL-DNFNSYYDPSLKRARQKLLQ-KHQVFIVEGDLNDAPLLTKLFDVV- 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~-~r~~~~~~~~~~~~~~~~~~-~~~v~~v~~Dl~d~~~l~~~~~~~- 192 (469)
.++++|+||||+|+||+++++.|+++|++|+++ .|... ........... ...+.++.+|++|++++.++++..
T Consensus 4 ~~~~~ilItGasg~iG~~la~~l~~~G~~v~i~~~r~~~----~~~~~~~~~~~~~~~~~~~~~D~~d~~~i~~~~~~~~ 79 (254)
T PRK12746 4 LDGKVALVTGASRGIGRAIAMRLANDGALVAIHYGRNKQ----AADETIREIESNGGKAFLIEADLNSIDGVKKLVEQLK 79 (254)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHH----HHHHHHHHHHhcCCcEEEEEcCcCCHHHHHHHHHHHH
Confidence 456899999999999999999999999999876 45321 11111112111 236889999999999998887742
Q ss_pred ----------CccEEEEcccccChhh----hccChHHHHHHHHHHHHHHHHHHHhc-CCCCeEEEEcCccccCCCCCCCC
Q 012176 193 ----------PFTHVLHLAAQAGVRY----AMQNPQSYVASNIAGFVNLLEVCKSV-NPQPSIVWASSSSVYGLNTQVPF 257 (469)
Q Consensus 193 ----------~~d~Vih~Aa~~~~~~----~~~~~~~~~~~Nv~~~~~ll~aa~~~-~~~~~~V~~SS~~vyg~~~~~~~ 257 (469)
++|+|||+||...... ..+..+..+++|+.++.++++++... ...++||++||..++.+.
T Consensus 80 ~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~v~~sS~~~~~~~----- 154 (254)
T PRK12746 80 NELQIRVGTSEIDILVNNAGIGTQGTIENTTEEIFDEIMAVNIKAPFFLIQQTLPLLRAEGRVINISSAEVRLGF----- 154 (254)
T ss_pred HHhccccCCCCccEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEEECCHHhcCCC-----
Confidence 5799999999754322 12223567889999999999988753 112389999998876532
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCc
Q 012176 258 SESHRTDQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDRE 334 (469)
Q Consensus 258 ~E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 334 (469)
.+...|+.+|.+.|.+++.++.+ .++++++++||.+++|.......-..+....... .
T Consensus 155 -------~~~~~Y~~sK~a~~~~~~~~~~~~~~~~i~v~~v~pg~~~t~~~~~~~~~~~~~~~~~~~------------~ 215 (254)
T PRK12746 155 -------TGSIAYGLSKGALNTMTLPLAKHLGERGITVNTIMPGYTKTDINAKLLDDPEIRNFATNS------------S 215 (254)
T ss_pred -------CCCcchHhhHHHHHHHHHHHHHHHhhcCcEEEEEEECCccCcchhhhccChhHHHHHHhc------------C
Confidence 34567999999999999988875 4799999999999987432100001111111111 1
Q ss_pred ceEecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCC
Q 012176 335 VARDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNT 373 (469)
Q Consensus 335 ~~~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~ 373 (469)
....+++++|+++++..++..... ...|++|++.++
T Consensus 216 ~~~~~~~~~dva~~~~~l~~~~~~---~~~g~~~~i~~~ 251 (254)
T PRK12746 216 VFGRIGQVEDIADAVAFLASSDSR---WVTGQIIDVSGG 251 (254)
T ss_pred CcCCCCCHHHHHHHHHHHcCcccC---CcCCCEEEeCCC
Confidence 123567899999999888765421 235689999876
|
|
| >PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.5e-20 Score=180.70 Aligned_cols=226 Identities=16% Similarity=0.109 Sum_probs=160.5
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhh-ccCCeEEEEecCCCHHHHHHhhccC-----
Q 012176 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLL-QKHQVFIVEGDLNDAPLLTKLFDVV----- 192 (469)
Q Consensus 119 ~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~v~~v~~Dl~d~~~l~~~~~~~----- 192 (469)
|+|+||||+|+||+++++.|+++|++|++++|..... ......... ...++.++.+|++|++++.++++.+
T Consensus 3 k~vlItG~sg~iG~~la~~L~~~g~~vi~~~r~~~~~---~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 79 (256)
T PRK12745 3 PVALVTGGRRGIGLGIARALAAAGFDLAINDRPDDEE---LAATQQELRALGVEVIFFPADVADLSAHEAMLDAAQAAWG 79 (256)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCCEEEEEecCchhH---HHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHhcC
Confidence 6899999999999999999999999999999864311 111111111 1236889999999999988887754
Q ss_pred CccEEEEcccccChh------hhccChHHHHHHHHHHHHHHHHHHHhc----C--C---CCeEEEEcCccccCCCCCCCC
Q 012176 193 PFTHVLHLAAQAGVR------YAMQNPQSYVASNIAGFVNLLEVCKSV----N--P---QPSIVWASSSSVYGLNTQVPF 257 (469)
Q Consensus 193 ~~d~Vih~Aa~~~~~------~~~~~~~~~~~~Nv~~~~~ll~aa~~~----~--~---~~~~V~~SS~~vyg~~~~~~~ 257 (469)
++|+||||||..... ...+.++..+++|+.++.++++++... . . .++||++||...+.+.
T Consensus 80 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~----- 154 (256)
T PRK12745 80 RIDCLVNNAGVGVKVRGDLLDLTPESFDRVLAINLRGPFFLTQAVAKRMLAQPEPEELPHRSIVFVSSVNAIMVS----- 154 (256)
T ss_pred CCCEEEECCccCCCCCCChhhCCHHHHHHHHHhcchHHHHHHHHHHHHHHhccCcCCCCCcEEEEECChhhccCC-----
Confidence 679999999874321 223455678999999999999887542 1 1 2379999997654322
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCc
Q 012176 258 SESHRTDQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDRE 334 (469)
Q Consensus 258 ~E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 334 (469)
.+.+.|+.+|.+.|.+++.++.+ +|++++++|||.+.++...... ..+......+ ..
T Consensus 155 -------~~~~~Y~~sK~a~~~~~~~l~~~~~~~gi~v~~i~pg~v~t~~~~~~~--~~~~~~~~~~-~~---------- 214 (256)
T PRK12745 155 -------PNRGEYCISKAGLSMAAQLFAARLAEEGIGVYEVRPGLIKTDMTAPVT--AKYDALIAKG-LV---------- 214 (256)
T ss_pred -------CCCcccHHHHHHHHHHHHHHHHHHHHhCCEEEEEecCCCcCccccccc--hhHHhhhhhc-CC----------
Confidence 24567999999999999999865 5899999999999987543211 1221111111 11
Q ss_pred ceEecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCCc
Q 012176 335 VARDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTSP 375 (469)
Q Consensus 335 ~~~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~~ 375 (469)
....+.+++|+++++..++..... ...|++|++.++..
T Consensus 215 ~~~~~~~~~d~a~~i~~l~~~~~~---~~~G~~~~i~gg~~ 252 (256)
T PRK12745 215 PMPRWGEPEDVARAVAALASGDLP---YSTGQAIHVDGGLS 252 (256)
T ss_pred CcCCCcCHHHHHHHHHHHhCCccc---ccCCCEEEECCCee
Confidence 123477999999999988754321 24568999988754
|
|
| >PRK06180 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.2e-20 Score=183.98 Aligned_cols=212 Identities=16% Similarity=0.126 Sum_probs=150.1
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccC----
Q 012176 117 NGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV---- 192 (469)
Q Consensus 117 ~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~---- 192 (469)
.+++|+||||+|+||++++++|+++|++|++++|+.. ....... ....++..+.+|++|.+++.++++++
T Consensus 3 ~~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~----~~~~l~~--~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~ 76 (277)
T PRK06180 3 SMKTWLITGVSSGFGRALAQAALAAGHRVVGTVRSEA----ARADFEA--LHPDRALARLLDVTDFDAIDAVVADAEATF 76 (277)
T ss_pred CCCEEEEecCCChHHHHHHHHHHhCcCEEEEEeCCHH----HHHHHHh--hcCCCeeEEEccCCCHHHHHHHHHHHHHHh
Confidence 4678999999999999999999999999999999542 1111111 11236888999999999998888753
Q ss_pred -CccEEEEcccccChhh----hccChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEEcCccccCCCCCCCCCCCCCC
Q 012176 193 -PFTHVLHLAAQAGVRY----AMQNPQSYVASNIAGFVNLLEVCK----SVNPQPSIVWASSSSVYGLNTQVPFSESHRT 263 (469)
Q Consensus 193 -~~d~Vih~Aa~~~~~~----~~~~~~~~~~~Nv~~~~~ll~aa~----~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~ 263 (469)
++|+||||||...... ..++.+..+++|+.++.++++++. +.+.. +||++||.+.+.+.
T Consensus 77 ~~~d~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~-~iv~iSS~~~~~~~----------- 144 (277)
T PRK06180 77 GPIDVLVNNAGYGHEGAIEESPLAEMRRQFEVNVFGAVAMTKAVLPGMRARRRG-HIVNITSMGGLITM----------- 144 (277)
T ss_pred CCCCEEEECCCccCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhccCCC-EEEEEecccccCCC-----------
Confidence 5799999999743321 123345679999999999999853 33443 89999997665422
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeecceecCCCCCCC-----hHHHH---HHHHHcCCceEEEeeCCC
Q 012176 264 DQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPDM-----AYFFF---TKDILQGKTIDVYKTQDD 332 (469)
Q Consensus 264 ~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~Gp~~~~~~-----~~~~~---~~~~~~g~~~~~~~~~~~ 332 (469)
.+...|+.+|.+.|.+++.++.+ +|++++++|||.+.++...... .+..+ +........ .
T Consensus 145 -~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~------- 215 (277)
T PRK06180 145 -PGIGYYCGSKFALEGISESLAKEVAPFGIHVTAVEPGSFRTDWAGRSMVRTPRSIADYDALFGPIRQARE-A------- 215 (277)
T ss_pred -CCcchhHHHHHHHHHHHHHHHHHhhhhCcEEEEEecCCcccCccccccccCCCCcHhHHHHHHHHHHHHH-h-------
Confidence 34578999999999999998865 4899999999999886432211 11111 111110000 0
Q ss_pred CcceEecccHHHHHHHHHHHhccC
Q 012176 333 REVARDFTYIDDVVKGCVGATGSG 356 (469)
Q Consensus 333 ~~~~~~~v~v~Dva~~~~~~~~~~ 356 (469)
.....+..++|+|++++.+++.+
T Consensus 216 -~~~~~~~~~~dva~~~~~~l~~~ 238 (277)
T PRK06180 216 -KSGKQPGDPAKAAQAILAAVESD 238 (277)
T ss_pred -hccCCCCCHHHHHHHHHHHHcCC
Confidence 01123567999999999999875
|
|
| >PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.6e-20 Score=179.76 Aligned_cols=228 Identities=12% Similarity=0.037 Sum_probs=162.3
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccC---
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~--- 192 (469)
..+++|+||||+|+||.++++.|+++|++|++++|+.... ............+.++.+|+.|++++.++++.+
T Consensus 3 ~~~~~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~~~~~----~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 78 (251)
T PRK07231 3 LEGKVAIVTGASSGIGEGIARRFAAEGARVVVTDRNEEAA----ERVAAEILAGGRAIAVAADVSDEADVEAAVAAALER 78 (251)
T ss_pred cCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHH----HHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 4568999999999999999999999999999999965321 111111111346889999999999999888765
Q ss_pred --CccEEEEcccccChh-----hhccChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEEcCccccCCCCCCCCCCCC
Q 012176 193 --PFTHVLHLAAQAGVR-----YAMQNPQSYVASNIAGFVNLLEVCKS----VNPQPSIVWASSSSVYGLNTQVPFSESH 261 (469)
Q Consensus 193 --~~d~Vih~Aa~~~~~-----~~~~~~~~~~~~Nv~~~~~ll~aa~~----~~~~~~~V~~SS~~vyg~~~~~~~~E~~ 261 (469)
++|+|||+||..... ...++++..+++|+.++..+++.+.. .+. ++||++||...+.+.
T Consensus 79 ~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~-~~iv~~sS~~~~~~~--------- 148 (251)
T PRK07231 79 FGSVDILVNNAGTTHRNGPLLDVDEAEFDRIFAVNVKSPYLWTQAAVPAMRGEGG-GAIVNVASTAGLRPR--------- 148 (251)
T ss_pred hCCCCEEEECCCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCC-cEEEEEcChhhcCCC---------
Confidence 689999999874321 23345567899999998888877653 444 389999998776533
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCCCCCh--HHHHHHHHHcCCceEEEeeCCCCcce
Q 012176 262 RTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMA--YFFFTKDILQGKTIDVYKTQDDREVA 336 (469)
Q Consensus 262 ~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~~~~~--~~~~~~~~~~g~~~~~~~~~~~~~~~ 336 (469)
.+...|+.+|.+.+.+++.++.++ ++++++++||.+.++....... ...+........ ..
T Consensus 149 ---~~~~~y~~sk~~~~~~~~~~a~~~~~~~i~v~~i~pg~~~t~~~~~~~~~~~~~~~~~~~~~~------------~~ 213 (251)
T PRK07231 149 ---PGLGWYNASKGAVITLTKALAAELGPDKIRVNAVAPVVVETGLLEAFMGEPTPENRAKFLATI------------PL 213 (251)
T ss_pred ---CCchHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEEECccCCCcchhhhcccChHHHHHHhcCC------------CC
Confidence 345679999999999999988764 8999999999997764221000 011111222211 12
Q ss_pred EecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCCc
Q 012176 337 RDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTSP 375 (469)
Q Consensus 337 ~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~~ 375 (469)
..+++++|+|.+++.++..... ...|+++.+.++..
T Consensus 214 ~~~~~~~dva~~~~~l~~~~~~---~~~g~~~~~~gg~~ 249 (251)
T PRK07231 214 GRLGTPEDIANAALFLASDEAS---WITGVTLVVDGGRC 249 (251)
T ss_pred CCCcCHHHHHHHHHHHhCcccc---CCCCCeEEECCCcc
Confidence 3478999999999999865532 23457788876643
|
|
| >PRK08063 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.4e-20 Score=180.31 Aligned_cols=228 Identities=13% Similarity=0.056 Sum_probs=158.7
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEE-eCCCCCCChhHHHHHHHhh-ccCCeEEEEecCCCHHHHHHhhccC-
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGL-DNFNSYYDPSLKRARQKLL-QKHQVFIVEGDLNDAPLLTKLFDVV- 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~-~r~~~~~~~~~~~~~~~~~-~~~~v~~v~~Dl~d~~~l~~~~~~~- 192 (469)
+.+++|+||||+|+||+++++.|+++|++|+++ .|+... ......... ...++.++.+|++|+++++++++.+
T Consensus 2 ~~~~~vlItGa~g~iG~~~a~~l~~~g~~v~~~~~r~~~~----~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 77 (250)
T PRK08063 2 FSGKVALVTGSSRGIGKAIALRLAEEGYDIAVNYARSRKA----AEETAEEIEALGRKALAVKANVGDVEKIKEMFAQID 77 (250)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHH----HHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHH
Confidence 356899999999999999999999999998774 553321 111111111 1346889999999999999888764
Q ss_pred ----CccEEEEcccccChhh----hccChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEEcCccccCCCCCCCCCCC
Q 012176 193 ----PFTHVLHLAAQAGVRY----AMQNPQSYVASNIAGFVNLLEVCKS----VNPQPSIVWASSSSVYGLNTQVPFSES 260 (469)
Q Consensus 193 ----~~d~Vih~Aa~~~~~~----~~~~~~~~~~~Nv~~~~~ll~aa~~----~~~~~~~V~~SS~~vyg~~~~~~~~E~ 260 (469)
++|+|||+||...... ..+.....+++|+.++..+++++.. .+. ++||++||...+...
T Consensus 78 ~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~-g~iv~~sS~~~~~~~-------- 148 (250)
T PRK08063 78 EEFGRLDVFVNNAASGVLRPAMELEESHWDWTMNINAKALLFCAQEAAKLMEKVGG-GKIISLSSLGSIRYL-------- 148 (250)
T ss_pred HHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCC-eEEEEEcchhhccCC--------
Confidence 5799999998643221 1223345788999999999988764 333 399999997654321
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceE
Q 012176 261 HRTDQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVAR 337 (469)
Q Consensus 261 ~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 337 (469)
.+...|+.+|.+.|.+++.++.+ .|+++++|+||.+..+..........+........+ ..
T Consensus 149 ----~~~~~y~~sK~a~~~~~~~~~~~~~~~~i~v~~i~pg~v~t~~~~~~~~~~~~~~~~~~~~~------------~~ 212 (250)
T PRK08063 149 ----ENYTTVGVSKAALEALTRYLAVELAPKGIAVNAVSGGAVDTDALKHFPNREELLEDARAKTP------------AG 212 (250)
T ss_pred ----CCccHHHHHHHHHHHHHHHHHHHHhHhCeEEEeEecCcccCchhhhccCchHHHHHHhcCCC------------CC
Confidence 34568999999999999998865 489999999999987643211111122222211111 12
Q ss_pred ecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCCc
Q 012176 338 DFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTSP 375 (469)
Q Consensus 338 ~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~~ 375 (469)
.+++++|+|++++.++..+.. ...|+++++.++..
T Consensus 213 ~~~~~~dva~~~~~~~~~~~~---~~~g~~~~~~gg~~ 247 (250)
T PRK08063 213 RMVEPEDVANAVLFLCSPEAD---MIRGQTIIVDGGRS 247 (250)
T ss_pred CCcCHHHHHHHHHHHcCchhc---CccCCEEEECCCee
Confidence 368899999999999876532 23468899888754
|
|
| >PRK06914 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=7.2e-21 Score=185.59 Aligned_cols=232 Identities=17% Similarity=0.120 Sum_probs=158.9
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccC----
Q 012176 117 NGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV---- 192 (469)
Q Consensus 117 ~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~---- 192 (469)
+++++|||||+|+||+++++.|+++|++|++++|..+..... ...........+++++.+|++|++++++ ++..
T Consensus 2 ~~k~~lItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~-~~~~~~~~~~~~~~~~~~D~~d~~~~~~-~~~~~~~~ 79 (280)
T PRK06914 2 NKKIAIVTGASSGFGLLTTLELAKKGYLVIATMRNPEKQENL-LSQATQLNLQQNIKVQQLDVTDQNSIHN-FQLVLKEI 79 (280)
T ss_pred CCCEEEEECCCchHHHHHHHHHHhCCCEEEEEeCCHHHHHHH-HHHHHhcCCCCceeEEecCCCCHHHHHH-HHHHHHhc
Confidence 457899999999999999999999999999999854311111 1111111112468999999999998877 5442
Q ss_pred -CccEEEEcccccChh----hhccChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEEcCccccCCCCCCCCCCCCCC
Q 012176 193 -PFTHVLHLAAQAGVR----YAMQNPQSYVASNIAGFVNLLEVC----KSVNPQPSIVWASSSSVYGLNTQVPFSESHRT 263 (469)
Q Consensus 193 -~~d~Vih~Aa~~~~~----~~~~~~~~~~~~Nv~~~~~ll~aa----~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~ 263 (469)
++|+||||||..... ...++.+..+++|+.++.++++++ ++.+.. +||++||...+.+.
T Consensus 80 ~~id~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~-~iv~vsS~~~~~~~----------- 147 (280)
T PRK06914 80 GRIDLLVNNAGYANGGFVEEIPVEEYRKQFETNVFGAISVTQAVLPYMRKQKSG-KIINISSISGRVGF----------- 147 (280)
T ss_pred CCeeEEEECCcccccCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCC-EEEEECcccccCCC-----------
Confidence 579999999875432 122445567889999999988885 455554 89999996443211
Q ss_pred CCCCChHHHHHHHHHHHHHHHHH---HhCCcEEEEeecceecCCCCCC-----------ChHHHHHHHHHcCCceEEEee
Q 012176 264 DQPASLYAATKKAGEEIAHTYNH---IYGLALTGLRFFTVYGPWGRPD-----------MAYFFFTKDILQGKTIDVYKT 329 (469)
Q Consensus 264 ~~p~~~Y~~sK~~~E~~~~~~~~---~~gi~~~ilRp~~v~Gp~~~~~-----------~~~~~~~~~~~~g~~~~~~~~ 329 (469)
.+...|+.+|...|.+++.++. .+|++++++|||.++++..... .....++..+....
T Consensus 148 -~~~~~Y~~sK~~~~~~~~~l~~~~~~~~i~v~~v~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 219 (280)
T PRK06914 148 -PGLSPYVSSKYALEGFSESLRLELKPFGIDVALIEPGSYNTNIWEVGKQLAENQSETTSPYKEYMKKIQKHI------- 219 (280)
T ss_pred -CCCchhHHhHHHHHHHHHHHHHHhhhhCCEEEEEecCCcccchhhccccccccccccccchHHHHHHHHHHH-------
Confidence 3457899999999999998873 3599999999999988742211 01111111111100
Q ss_pred CCCCcceEecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCCcccHH
Q 012176 330 QDDREVARDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTSPVPVG 379 (469)
Q Consensus 330 ~~~~~~~~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~~vt~~ 379 (469)
......+++++|+|++++.++.++.. ...|+++++..+++.
T Consensus 220 ---~~~~~~~~~~~dva~~~~~~~~~~~~------~~~~~~~~~~~~~~~ 260 (280)
T PRK06914 220 ---NSGSDTFGNPIDVANLIVEIAESKRP------KLRYPIGKGVKLMIL 260 (280)
T ss_pred ---hhhhhccCCHHHHHHHHHHHHcCCCC------CcccccCCchHHHHH
Confidence 01124578899999999999987632 156888876654443
|
|
| >PRK06138 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=7.7e-21 Score=182.17 Aligned_cols=227 Identities=16% Similarity=0.141 Sum_probs=159.7
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccC---
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~--- 192 (469)
.++++++||||+|+||++|+++|+++|++|++++|+.+. .............+.++.+|++|+++++++++..
T Consensus 3 ~~~k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~----~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~i~~~ 78 (252)
T PRK06138 3 LAGRVAIVTGAGSGIGRATAKLFAREGARVVVADRDAEA----AERVAAAIAAGGRAFARQGDVGSAEAVEALVDFVAAR 78 (252)
T ss_pred CCCcEEEEeCCCchHHHHHHHHHHHCCCeEEEecCCHHH----HHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 467899999999999999999999999999999986431 1111111112346889999999999999888753
Q ss_pred --CccEEEEcccccChh----hhccChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEEcCccccCCCCCCCCCCCCC
Q 012176 193 --PFTHVLHLAAQAGVR----YAMQNPQSYVASNIAGFVNLLEVC----KSVNPQPSIVWASSSSVYGLNTQVPFSESHR 262 (469)
Q Consensus 193 --~~d~Vih~Aa~~~~~----~~~~~~~~~~~~Nv~~~~~ll~aa----~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~ 262 (469)
++|+||||+|..... ...++.+..+++|+.++.++.+++ ++.+.+ +||++||...+.+.
T Consensus 79 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~-~ii~~sS~~~~~~~---------- 147 (252)
T PRK06138 79 WGRLDVLVNNAGFGCGGTVVTTDEADWDAVMRVNVGGVFLWAKYAIPIMQRQGGG-SIVNTASQLALAGG---------- 147 (252)
T ss_pred cCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhhhhhHHHHHHHHHHHHHhcCCe-EEEEECChhhccCC----------
Confidence 679999999974322 123344567899999998777665 445554 89999997544221
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCCCCC---hHHHHHHHHHcCCceEEEeeCCCCcce
Q 012176 263 TDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDM---AYFFFTKDILQGKTIDVYKTQDDREVA 336 (469)
Q Consensus 263 ~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~~~~---~~~~~~~~~~~g~~~~~~~~~~~~~~~ 336 (469)
.+...|+.+|.+.+.+++.++.++ |++++++|||.++++...... ..+..+.....+. ...
T Consensus 148 --~~~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~-----------~~~ 214 (252)
T PRK06138 148 --RGRAAYVASKGAIASLTRAMALDHATDGIRVNAVAPGTIDTPYFRRIFARHADPEALREALRAR-----------HPM 214 (252)
T ss_pred --CCccHHHHHHHHHHHHHHHHHHHHHhcCeEEEEEEECCccCcchhhhhccccChHHHHHHHHhc-----------CCC
Confidence 235679999999999999998765 899999999999988432100 0001111111110 111
Q ss_pred EecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCC
Q 012176 337 RDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNT 373 (469)
Q Consensus 337 ~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~ 373 (469)
..+++++|++++++.++.++.. ...|.++.+.++
T Consensus 215 ~~~~~~~d~a~~~~~l~~~~~~---~~~g~~~~~~~g 248 (252)
T PRK06138 215 NRFGTAEEVAQAALFLASDESS---FATGTTLVVDGG 248 (252)
T ss_pred CCCcCHHHHHHHHHHHcCchhc---CccCCEEEECCC
Confidence 2378899999999999877632 344577777665
|
|
| >PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.6e-21 Score=185.48 Aligned_cols=234 Identities=15% Similarity=0.084 Sum_probs=160.7
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhh---ccCCeEEEEecCCCHHHHHHhhccC--
Q 012176 118 GMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLL---QKHQVFIVEGDLNDAPLLTKLFDVV-- 192 (469)
Q Consensus 118 ~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~---~~~~v~~v~~Dl~d~~~l~~~~~~~-- 192 (469)
+++|+||||+|+||.+++++|+++|++|++++|+... ......... ....+.++.+|++|.+++..+++..
T Consensus 2 ~k~ilItG~~~~IG~~la~~l~~~g~~vi~~~r~~~~----~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~ 77 (259)
T PRK12384 2 NQVAVVIGGGQTLGAFLCHGLAEEGYRVAVADINSEK----AANVAQEINAEYGEGMAYGFGADATSEQSVLALSRGVDE 77 (259)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHH----HHHHHHHHHHhcCCceeEEEEccCCCHHHHHHHHHHHHH
Confidence 5789999999999999999999999999999985432 111111111 1236899999999999988887653
Q ss_pred ---CccEEEEcccccChh----hhccChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEEcCcc-ccCCCCCCCCCCC
Q 012176 193 ---PFTHVLHLAAQAGVR----YAMQNPQSYVASNIAGFVNLLEVCKS----VNPQPSIVWASSSS-VYGLNTQVPFSES 260 (469)
Q Consensus 193 ---~~d~Vih~Aa~~~~~----~~~~~~~~~~~~Nv~~~~~ll~aa~~----~~~~~~~V~~SS~~-vyg~~~~~~~~E~ 260 (469)
++|+||||||..... ...++.+..+++|+.++..+++++.. .+..++||++||.. .++.
T Consensus 78 ~~~~id~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~~~iv~~ss~~~~~~~--------- 148 (259)
T PRK12384 78 IFGRVDLLVYNAGIAKAAFITDFQLGDFDRSLQVNLVGYFLCAREFSRLMIRDGIQGRIIQINSKSGKVGS--------- 148 (259)
T ss_pred HcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhCCCCcEEEEecCcccccCC---------
Confidence 679999999874432 22344567889999998888877644 34334899999854 3331
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeecceecCCCCCCChHHHHHHHHHc--CCceEEEeeCCCCcc
Q 012176 261 HRTDQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQ--GKTIDVYKTQDDREV 335 (469)
Q Consensus 261 ~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~--g~~~~~~~~~~~~~~ 335 (469)
.....|+.+|++.+.+++.++.+ +|++++++|||.++++..... .++.+...... +.....+ .++..
T Consensus 149 ----~~~~~Y~~sKaa~~~l~~~la~e~~~~gi~v~~v~pg~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~---~~~~~ 220 (259)
T PRK12384 149 ----KHNSGYSAAKFGGVGLTQSLALDLAEYGITVHSLMLGNLLKSPMFQS-LLPQYAKKLGIKPDEVEQYY---IDKVP 220 (259)
T ss_pred ----CCCchhHHHHHHHHHHHHHHHHHHHHcCcEEEEEecCCcccchhhhh-hhHHHHHhcCCChHHHHHHH---HHhCc
Confidence 23467999999999999888854 689999999999887643221 12222111100 0000001 11234
Q ss_pred eEecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCCc
Q 012176 336 ARDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTSP 375 (469)
Q Consensus 336 ~~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~~ 375 (469)
...+++++|++.+++.++.+... ...|++|++.+++.
T Consensus 221 ~~~~~~~~dv~~~~~~l~~~~~~---~~~G~~~~v~~g~~ 257 (259)
T PRK12384 221 LKRGCDYQDVLNMLLFYASPKAS---YCTGQSINVTGGQV 257 (259)
T ss_pred ccCCCCHHHHHHHHHHHcCcccc---cccCceEEEcCCEE
Confidence 46788999999999988765422 23568999998763
|
|
| >PRK07890 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=9.7e-21 Score=182.22 Aligned_cols=228 Identities=12% Similarity=0.091 Sum_probs=161.4
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhh-ccCCeEEEEecCCCHHHHHHhhccC--
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLL-QKHQVFIVEGDLNDAPLLTKLFDVV-- 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~v~~v~~Dl~d~~~l~~~~~~~-- 192 (469)
.++|+|+||||+|+||+++++.|+++|++|++++|+... .+....... ...++..+.+|++|.++++++++.+
T Consensus 3 l~~k~vlItGa~~~IG~~la~~l~~~G~~V~~~~r~~~~----~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 78 (258)
T PRK07890 3 LKGKVVVVSGVGPGLGRTLAVRAARAGADVVLAARTAER----LDEVAAEIDDLGRRALAVPTDITDEDQCANLVALALE 78 (258)
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCCHHH----HHHHHHHHHHhCCceEEEecCCCCHHHHHHHHHHHHH
Confidence 457899999999999999999999999999999985431 122211111 1246889999999999998888754
Q ss_pred ---CccEEEEcccccCh-----hhhccChHHHHHHHHHHHHHHHHHHHhcC--CCCeEEEEcCccccCCCCCCCCCCCCC
Q 012176 193 ---PFTHVLHLAAQAGV-----RYAMQNPQSYVASNIAGFVNLLEVCKSVN--PQPSIVWASSSSVYGLNTQVPFSESHR 262 (469)
Q Consensus 193 ---~~d~Vih~Aa~~~~-----~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~--~~~~~V~~SS~~vyg~~~~~~~~E~~~ 262 (469)
++|+|||+||.... ....++++..+++|+.++..+++++.... ...+||++||...+.+.
T Consensus 79 ~~g~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~ii~~sS~~~~~~~---------- 148 (258)
T PRK07890 79 RFGRVDALVNNAFRVPSMKPLADADFAHWRAVIELNVLGTLRLTQAFTPALAESGGSIVMINSMVLRHSQ---------- 148 (258)
T ss_pred HcCCccEEEECCccCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCEEEEEechhhccCC----------
Confidence 68999999987432 22345566889999999999999986531 12389999997664322
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCCCC---------ChHHHHHHHHHcCCceEEEeeC
Q 012176 263 TDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPD---------MAYFFFTKDILQGKTIDVYKTQ 330 (469)
Q Consensus 263 ~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~~~---------~~~~~~~~~~~~g~~~~~~~~~ 330 (469)
.+...|+.+|.+.+.+++.++.++ +++++++|||.|++|..... .....+...+...
T Consensus 149 --~~~~~Y~~sK~a~~~l~~~~a~~~~~~~i~v~~v~pg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 217 (258)
T PRK07890 149 --PKYGAYKMAKGALLAASQSLATELGPQGIRVNSVAPGYIWGDPLKGYFRHQAGKYGVTVEQIYAETAAN--------- 217 (258)
T ss_pred --CCcchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEeCCccCcHHHHHHhhhcccccCCCHHHHHHHHhhc---------
Confidence 345679999999999999998664 89999999999999853210 0001111111111
Q ss_pred CCCcceEecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCC
Q 012176 331 DDREVARDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTS 374 (469)
Q Consensus 331 ~~~~~~~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~ 374 (469)
.....+.+++|++++++.++..... ...|+++.+.++.
T Consensus 218 ---~~~~~~~~~~dva~a~~~l~~~~~~---~~~G~~i~~~gg~ 255 (258)
T PRK07890 218 ---SDLKRLPTDDEVASAVLFLASDLAR---AITGQTLDVNCGE 255 (258)
T ss_pred ---CCccccCCHHHHHHHHHHHcCHhhh---CccCcEEEeCCcc
Confidence 1123467899999999988875321 2345777666654
|
|
| >PRK07775 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.3e-20 Score=181.61 Aligned_cols=223 Identities=13% Similarity=0.076 Sum_probs=157.8
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhh-ccCCeEEEEecCCCHHHHHHhhccC--
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLL-QKHQVFIVEGDLNDAPLLTKLFDVV-- 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~v~~v~~Dl~d~~~l~~~~~~~-- 192 (469)
..+++|+||||+|+||++++++|+++|++|++++|+.. .......... ....+.++.+|++|.+++.++++.+
T Consensus 8 ~~~~~vlVtGa~g~iG~~la~~L~~~G~~V~~~~r~~~----~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 83 (274)
T PRK07775 8 PDRRPALVAGASSGIGAATAIELAAAGFPVALGARRVE----KCEELVDKIRADGGEAVAFPLDVTDPDSVKSFVAQAEE 83 (274)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHH----HHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHH
Confidence 45679999999999999999999999999999988542 1111111111 1236888899999999999888753
Q ss_pred ---CccEEEEcccccChhh----hccChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEEcCccccCCCCCCCCCCCC
Q 012176 193 ---PFTHVLHLAAQAGVRY----AMQNPQSYVASNIAGFVNLLEVCKS----VNPQPSIVWASSSSVYGLNTQVPFSESH 261 (469)
Q Consensus 193 ---~~d~Vih~Aa~~~~~~----~~~~~~~~~~~Nv~~~~~ll~aa~~----~~~~~~~V~~SS~~vyg~~~~~~~~E~~ 261 (469)
++|+||||||...... ..++.+..+++|+.++.++++++.. .+. ++||++||...|...
T Consensus 84 ~~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~l~~~~~~~~-g~iv~isS~~~~~~~--------- 153 (274)
T PRK07775 84 ALGEIEVLVSGAGDTYFGKLHEISTEQFESQVQIHLVGANRLATAVLPGMIERRR-GDLIFVGSDVALRQR--------- 153 (274)
T ss_pred hcCCCCEEEECCCcCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCC-ceEEEECChHhcCCC---------
Confidence 5799999999754321 2234456789999999999988653 333 389999998776532
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCCC--CChHHHHHHHHHcCCceEEEeeCCCCcce
Q 012176 262 RTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRP--DMAYFFFTKDILQGKTIDVYKTQDDREVA 336 (469)
Q Consensus 262 ~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 336 (469)
.+...|+.+|.+.|.+++.++.++ |++++++|||.+.++.... ......++....... ....
T Consensus 154 ---~~~~~Y~~sK~a~~~l~~~~~~~~~~~gi~v~~v~pG~~~t~~~~~~~~~~~~~~~~~~~~~~----------~~~~ 220 (274)
T PRK07775 154 ---PHMGAYGAAKAGLEAMVTNLQMELEGTGVRASIVHPGPTLTGMGWSLPAEVIGPMLEDWAKWG----------QARH 220 (274)
T ss_pred ---CCcchHHHHHHHHHHHHHHHHHHhcccCeEEEEEeCCcccCcccccCChhhhhHHHHHHHHhc----------cccc
Confidence 234679999999999999998765 8999999999886553211 111112222111100 1223
Q ss_pred EecccHHHHHHHHHHHhccCCCCCCCCCceEEEeC
Q 012176 337 RDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLG 371 (469)
Q Consensus 337 ~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~ 371 (469)
..++|++|+|++++.++.++. .+.+||+.
T Consensus 221 ~~~~~~~dva~a~~~~~~~~~------~~~~~~~~ 249 (274)
T PRK07775 221 DYFLRASDLARAITFVAETPR------GAHVVNME 249 (274)
T ss_pred ccccCHHHHHHHHHHHhcCCC------CCCeeEEe
Confidence 568999999999999987652 23677775
|
|
| >PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1e-20 Score=181.29 Aligned_cols=229 Identities=12% Similarity=0.023 Sum_probs=160.3
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhc-cCCeEEEEecCCCHHHHHHhhccC--
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQ-KHQVFIVEGDLNDAPLLTKLFDVV-- 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~v~~v~~Dl~d~~~l~~~~~~~-- 192 (469)
..+++||||||+|+||++++++|+++|++|++..|... ............ ...+.++.+|++|.+++.++++..
T Consensus 4 ~~~~~vlitGasg~iG~~l~~~l~~~g~~v~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 80 (252)
T PRK06077 4 LKDKVVVVTGSGRGIGRAIAVRLAKEGSLVVVNAKKRA---EEMNETLKMVKENGGEGIGVLADVSTREGCETLAKATID 80 (252)
T ss_pred CCCcEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCCh---HHHHHHHHHHHHcCCeeEEEEeccCCHHHHHHHHHHHHH
Confidence 45689999999999999999999999999988776432 111111111111 235778899999999988887753
Q ss_pred ---CccEEEEcccccChhh----hccChHHHHHHHHHHHHHHHHHHHhc-CCCCeEEEEcCccccCCCCCCCCCCCCCCC
Q 012176 193 ---PFTHVLHLAAQAGVRY----AMQNPQSYVASNIAGFVNLLEVCKSV-NPQPSIVWASSSSVYGLNTQVPFSESHRTD 264 (469)
Q Consensus 193 ---~~d~Vih~Aa~~~~~~----~~~~~~~~~~~Nv~~~~~ll~aa~~~-~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~ 264 (469)
++|+||||||...... ..+..+..+++|+.++..+++++.+. ...++||++||...+.+.
T Consensus 81 ~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~------------ 148 (252)
T PRK06077 81 RYGVADILVNNAGLGLFSPFLNVDDKLIDKHISTDFKSVIYCSQELAKEMREGGAIVNIASVAGIRPA------------ 148 (252)
T ss_pred HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHhHhCHHHHHHHHHHHHHhhcCcEEEEEcchhccCCC------------
Confidence 5799999999633221 11223567899999999999987654 112489999998877532
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHh--CCcEEEEeecceecCCCCCCC-hHHHHHHHHHcCCceEEEeeCCCCcceEeccc
Q 012176 265 QPASLYAATKKAGEEIAHTYNHIY--GLALTGLRFFTVYGPWGRPDM-AYFFFTKDILQGKTIDVYKTQDDREVARDFTY 341 (469)
Q Consensus 265 ~p~~~Y~~sK~~~E~~~~~~~~~~--gi~~~ilRp~~v~Gp~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~ 341 (469)
.+.+.|+.+|.+.|.+++.++.++ ++.+.+++||.|.++...... ............ ......+++
T Consensus 149 ~~~~~Y~~sK~~~~~~~~~l~~~~~~~i~v~~v~Pg~i~t~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~ 217 (252)
T PRK06077 149 YGLSIYGAMKAAVINLTKYLALELAPKIRVNAIAPGFVKTKLGESLFKVLGMSEKEFAEK-----------FTLMGKILD 217 (252)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeeCCccChHHHhhhhcccccHHHHHHh-----------cCcCCCCCC
Confidence 456789999999999999998876 689999999999886432100 000000011100 111236899
Q ss_pred HHHHHHHHHHHhccCCCCCCCCCceEEEeCCCCc
Q 012176 342 IDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTSP 375 (469)
Q Consensus 342 v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~~ 375 (469)
++|+|++++.++..+ ...+++|++.++..
T Consensus 218 ~~dva~~~~~~~~~~-----~~~g~~~~i~~g~~ 246 (252)
T PRK06077 218 PEEVAEFVAAILKIE-----SITGQVFVLDSGES 246 (252)
T ss_pred HHHHHHHHHHHhCcc-----ccCCCeEEecCCee
Confidence 999999999999754 23468999998753
|
|
| >PRK09134 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.8e-20 Score=180.67 Aligned_cols=228 Identities=14% Similarity=0.068 Sum_probs=161.9
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhh-ccCCeEEEEecCCCHHHHHHhhccC--
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLL-QKHQVFIVEGDLNDAPLLTKLFDVV-- 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~v~~v~~Dl~d~~~l~~~~~~~-- 192 (469)
..+|++|||||+|+||+++++.|+++|++|+++++... ........... ....+.++.+|++|.+++.++++.+
T Consensus 7 ~~~k~vlItGas~giG~~la~~l~~~g~~v~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~ 83 (258)
T PRK09134 7 AAPRAALVTGAARRIGRAIALDLAAHGFDVAVHYNRSR---DEAEALAAEIRALGRRAVALQADLADEAEVRALVARASA 83 (258)
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCH---HHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHH
Confidence 45789999999999999999999999999998876432 11111111111 1346889999999999998888753
Q ss_pred ---CccEEEEcccccCh----hhhccChHHHHHHHHHHHHHHHHHHHhcC---CCCeEEEEcCccccCCCCCCCCCCCCC
Q 012176 193 ---PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCKSVN---PQPSIVWASSSSVYGLNTQVPFSESHR 262 (469)
Q Consensus 193 ---~~d~Vih~Aa~~~~----~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~---~~~~~V~~SS~~vyg~~~~~~~~E~~~ 262 (469)
++|+||||||.... ....++.+.++++|+.++..+++++.... ..+++|+++|...+...
T Consensus 84 ~~~~iD~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~~s~~~~~~~---------- 153 (258)
T PRK09134 84 ALGPITLLVNNASLFEYDSAASFTRASWDRHMATNLRAPFVLAQAFARALPADARGLVVNMIDQRVWNLN---------- 153 (258)
T ss_pred HcCCCCEEEECCcCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCceEEEECchhhcCCC----------
Confidence 47999999986432 12234556789999999999999876532 22489999886554321
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHh--CCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceEecc
Q 012176 263 TDQPASLYAATKKAGEEIAHTYNHIY--GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFT 340 (469)
Q Consensus 263 ~~~p~~~Y~~sK~~~E~~~~~~~~~~--gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v 340 (469)
.....|+.+|.+.|.+++.++.++ ++++++++||.+...... ....+. ....+.+. + ...
T Consensus 154 --p~~~~Y~~sK~a~~~~~~~la~~~~~~i~v~~i~PG~v~t~~~~---~~~~~~-~~~~~~~~--------~----~~~ 215 (258)
T PRK09134 154 --PDFLSYTLSKAALWTATRTLAQALAPRIRVNAIGPGPTLPSGRQ---SPEDFA-RQHAATPL--------G----RGS 215 (258)
T ss_pred --CCchHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecccccCCccc---ChHHHH-HHHhcCCC--------C----CCc
Confidence 123579999999999999998765 499999999998764322 112222 22222221 1 136
Q ss_pred cHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCCcccHH
Q 012176 341 YIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTSPVPVG 379 (469)
Q Consensus 341 ~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~~vt~~ 379 (469)
+++|+|++++.+++.+ ...+++|++.++..++|.
T Consensus 216 ~~~d~a~~~~~~~~~~-----~~~g~~~~i~gg~~~~~~ 249 (258)
T PRK09134 216 TPEEIAAAVRYLLDAP-----SVTGQMIAVDGGQHLAWL 249 (258)
T ss_pred CHHHHHHHHHHHhcCC-----CcCCCEEEECCCeecccc
Confidence 6999999999999864 345689999888766554
|
|
| >PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.1e-20 Score=176.05 Aligned_cols=226 Identities=15% Similarity=0.087 Sum_probs=162.5
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhh-ccCCeEEEEecCCCHHHHHHhhccC--
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLL-QKHQVFIVEGDLNDAPLLTKLFDVV-- 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~v~~v~~Dl~d~~~l~~~~~~~-- 192 (469)
+.+|+|+||||+|+||.++++.|+++|++|++++|+.... ........ ...++.++.+|+.|++++.+++++.
T Consensus 3 ~~~~~ilItGasg~iG~~l~~~l~~~g~~v~~~~r~~~~~----~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 78 (246)
T PRK05653 3 LQGKTALVTGASRGIGRAIALRLAADGAKVVIYDSNEEAA----EALAAELRAAGGEARVLVFDVSDEAAVRALIEAAVE 78 (246)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChhHH----HHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHH
Confidence 4568999999999999999999999999999999965321 11111111 1346889999999999988888753
Q ss_pred ---CccEEEEcccccChh----hhccChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEEcCccccCCCCCCCCCCCC
Q 012176 193 ---PFTHVLHLAAQAGVR----YAMQNPQSYVASNIAGFVNLLEVCK----SVNPQPSIVWASSSSVYGLNTQVPFSESH 261 (469)
Q Consensus 193 ---~~d~Vih~Aa~~~~~----~~~~~~~~~~~~Nv~~~~~ll~aa~----~~~~~~~~V~~SS~~vyg~~~~~~~~E~~ 261 (469)
++|+|||++|..... ...+.....++.|+.+..++++++. +.+.+ +||++||.....+.
T Consensus 79 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~-~ii~~ss~~~~~~~--------- 148 (246)
T PRK05653 79 AFGALDILVNNAGITRDALLPRMSEEDWDRVIDVNLTGTFNVVRAALPPMIKARYG-RIVNISSVSGVTGN--------- 148 (246)
T ss_pred HhCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCc-EEEEECcHHhccCC---------
Confidence 569999999875432 1223345678999999999998874 44554 99999996543211
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceEe
Q 012176 262 RTDQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARD 338 (469)
Q Consensus 262 ~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 338 (469)
.+...|+.+|.+.|.+++.++++ .+++++++|||.++|+.... ....+........ ....
T Consensus 149 ---~~~~~y~~sk~~~~~~~~~l~~~~~~~~i~~~~i~pg~~~~~~~~~--~~~~~~~~~~~~~------------~~~~ 211 (246)
T PRK05653 149 ---PGQTNYSAAKAGVIGFTKALALELASRGITVNAVAPGFIDTDMTEG--LPEEVKAEILKEI------------PLGR 211 (246)
T ss_pred ---CCCcHhHhHHHHHHHHHHHHHHHHhhcCeEEEEEEeCCcCCcchhh--hhHHHHHHHHhcC------------CCCC
Confidence 34577999999999999998765 38999999999999986542 1111111111111 1245
Q ss_pred cccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCCc
Q 012176 339 FTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTSP 375 (469)
Q Consensus 339 ~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~~ 375 (469)
+++++|+++++..++..... ...+++|+++++..
T Consensus 212 ~~~~~dva~~~~~~~~~~~~---~~~g~~~~~~gg~~ 245 (246)
T PRK05653 212 LGQPEEVANAVAFLASDAAS---YITGQVIPVNGGMY 245 (246)
T ss_pred CcCHHHHHHHHHHHcCchhc---CccCCEEEeCCCee
Confidence 78899999999999865422 34569999998753
|
|
| >PLN02253 xanthoxin dehydrogenase | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.7e-20 Score=183.03 Aligned_cols=231 Identities=14% Similarity=0.064 Sum_probs=160.2
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccC---
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~--- 192 (469)
.++|+++||||+|+||++++++|+++|++|++++|..+ .............++.++.+|++|.++++++++.+
T Consensus 16 l~~k~~lItGas~gIG~~la~~l~~~G~~v~~~~~~~~----~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~ 91 (280)
T PLN02253 16 LLGKVALVTGGATGIGESIVRLFHKHGAKVCIVDLQDD----LGQNVCDSLGGEPNVCFFHCDVTVEDDVSRAVDFTVDK 91 (280)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHH----HHHHHHHHhcCCCceEEEEeecCCHHHHHHHHHHHHHH
Confidence 56789999999999999999999999999999998532 11111122212246899999999999998888753
Q ss_pred --CccEEEEcccccChh------hhccChHHHHHHHHHHHHHHHHHHHhcC---CCCeEEEEcCccc-cCCCCCCCCCCC
Q 012176 193 --PFTHVLHLAAQAGVR------YAMQNPQSYVASNIAGFVNLLEVCKSVN---PQPSIVWASSSSV-YGLNTQVPFSES 260 (469)
Q Consensus 193 --~~d~Vih~Aa~~~~~------~~~~~~~~~~~~Nv~~~~~ll~aa~~~~---~~~~~V~~SS~~v-yg~~~~~~~~E~ 260 (469)
++|+||||||..... ...++++.++++|+.++.++++++.... ..+++|++||... ++.
T Consensus 92 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~ii~isS~~~~~~~--------- 162 (280)
T PLN02253 92 FGTLDIMVNNAGLTGPPCPDIRNVELSEFEKVFDVNVKGVFLGMKHAARIMIPLKKGSIVSLCSVASAIGG--------- 162 (280)
T ss_pred hCCCCEEEECCCcCCCCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCceEEEecChhhcccC---------
Confidence 579999999974321 2234567899999999999998875421 1238999988543 331
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCCC---CC-hHHHHH----HHHHcCCceEEEee
Q 012176 261 HRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRP---DM-AYFFFT----KDILQGKTIDVYKT 329 (469)
Q Consensus 261 ~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~~---~~-~~~~~~----~~~~~g~~~~~~~~ 329 (469)
.....|+.+|.+.|.+++.++.++ |+++++++||.|.++.... .. .....+ .....+.++
T Consensus 163 ----~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~i~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l----- 233 (280)
T PLN02253 163 ----LGPHAYTGSKHAVLGLTRSVAAELGKHGIRVNCVSPYAVPTALALAHLPEDERTEDALAGFRAFAGKNANL----- 233 (280)
T ss_pred ----CCCcccHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcccccccccccccccchhhhhhhhHHHhhcCCCC-----
Confidence 123569999999999999998775 7999999999998763211 10 001111 111111111
Q ss_pred CCCCcceEecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCCccc
Q 012176 330 QDDREVARDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTSPVP 377 (469)
Q Consensus 330 ~~~~~~~~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~~vt 377 (469)
....++++|++++++.++..... ...|+++++.++...+
T Consensus 234 ------~~~~~~~~dva~~~~~l~s~~~~---~i~G~~i~vdgG~~~~ 272 (280)
T PLN02253 234 ------KGVELTVDDVANAVLFLASDEAR---YISGLNLMIDGGFTCT 272 (280)
T ss_pred ------cCCCCCHHHHHHHHHhhcCcccc---cccCcEEEECCchhhc
Confidence 12247799999999998765421 2345888888775433
|
|
| >PRK12935 acetoacetyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.9e-20 Score=176.23 Aligned_cols=225 Identities=16% Similarity=0.116 Sum_probs=160.7
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhc-cCCeEEEEecCCCHHHHHHhhccC--
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQ-KHQVFIVEGDLNDAPLLTKLFDVV-- 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~v~~v~~Dl~d~~~l~~~~~~~-- 192 (469)
.++++++||||+|+||.+++++|+++|++|+++.+... ...........+ ..++.++.+|++|++.+.++++.+
T Consensus 4 ~~~~~~lItG~s~~iG~~la~~l~~~g~~v~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 80 (247)
T PRK12935 4 LNGKVAIVTGGAKGIGKAITVALAQEGAKVVINYNSSK---EAAENLVNELGKEGHDVYAVQADVSKVEDANRLVEEAVN 80 (247)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEcCCcH---HHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHH
Confidence 46789999999999999999999999999987665322 111111111111 236889999999999999888763
Q ss_pred ---CccEEEEcccccChh----hhccChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEEcCccccCCCCCCCCCCCC
Q 012176 193 ---PFTHVLHLAAQAGVR----YAMQNPQSYVASNIAGFVNLLEVCKS----VNPQPSIVWASSSSVYGLNTQVPFSESH 261 (469)
Q Consensus 193 ---~~d~Vih~Aa~~~~~----~~~~~~~~~~~~Nv~~~~~ll~aa~~----~~~~~~~V~~SS~~vyg~~~~~~~~E~~ 261 (469)
++|+||||||..... ...+..+..+++|+.++..+++++.. .+. .+||++||...+.+.
T Consensus 81 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~-~~iv~~sS~~~~~~~--------- 150 (247)
T PRK12935 81 HFGKVDILVNNAGITRDRTFKKLNREDWERVIDVNLSSVFNTTSAVLPYITEAEE-GRIISISSIIGQAGG--------- 150 (247)
T ss_pred HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCC-cEEEEEcchhhcCCC---------
Confidence 579999999974432 12345667899999999999998864 233 389999996544221
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceEe
Q 012176 262 RTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARD 338 (469)
Q Consensus 262 ~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 338 (469)
.+...|+.+|.+.+.+++.++.++ ++++++++||.|.++...... .........+ .....
T Consensus 151 ---~~~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~pg~v~t~~~~~~~--~~~~~~~~~~------------~~~~~ 213 (247)
T PRK12935 151 ---FGQTNYSAAKAGMLGFTKSLALELAKTNVTVNAICPGFIDTEMVAEVP--EEVRQKIVAK------------IPKKR 213 (247)
T ss_pred ---CCCcchHHHHHHHHHHHHHHHHHHHHcCcEEEEEEeCCCcChhhhhcc--HHHHHHHHHh------------CCCCC
Confidence 345689999999999999888765 899999999999876322110 1111111111 12346
Q ss_pred cccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCC
Q 012176 339 FTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTS 374 (469)
Q Consensus 339 ~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~ 374 (469)
+.+++|++++++.+++... -..+++||+.++.
T Consensus 214 ~~~~edva~~~~~~~~~~~----~~~g~~~~i~~g~ 245 (247)
T PRK12935 214 FGQADEIAKGVVYLCRDGA----YITGQQLNINGGL 245 (247)
T ss_pred CcCHHHHHHHHHHHcCccc----CccCCEEEeCCCc
Confidence 8999999999999886532 1345999998874
|
|
| >PRK07060 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=6.4e-20 Score=175.01 Aligned_cols=224 Identities=18% Similarity=0.162 Sum_probs=161.6
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccC-Cc
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV-PF 194 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~-~~ 194 (469)
.++++++||||+|+||.++++.|+++|++|++++|+.+ ... ......++.++.+|++|.+.+.++++.. ++
T Consensus 7 ~~~~~~lItGa~g~iG~~~a~~l~~~g~~V~~~~r~~~----~~~----~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~ 78 (245)
T PRK07060 7 FSGKSVLVTGASSGIGRACAVALAQRGARVVAAARNAA----ALD----RLAGETGCEPLRLDVGDDAAIRAALAAAGAF 78 (245)
T ss_pred cCCCEEEEeCCcchHHHHHHHHHHHCCCEEEEEeCCHH----HHH----HHHHHhCCeEEEecCCCHHHHHHHHHHhCCC
Confidence 56789999999999999999999999999999998532 111 1111225678899999999999888763 47
Q ss_pred cEEEEcccccChh----hhccChHHHHHHHHHHHHHHHHHHHhc----CCCCeEEEEcCccccCCCCCCCCCCCCCCCCC
Q 012176 195 THVLHLAAQAGVR----YAMQNPQSYVASNIAGFVNLLEVCKSV----NPQPSIVWASSSSVYGLNTQVPFSESHRTDQP 266 (469)
Q Consensus 195 d~Vih~Aa~~~~~----~~~~~~~~~~~~Nv~~~~~ll~aa~~~----~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p 266 (469)
|+|||+||..... ...++.+..++.|+.++.++++++.+. +..++||++||...+.+. .+
T Consensus 79 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~~~------------~~ 146 (245)
T PRK07060 79 DGLVNCAGIASLESALDMTAEGFDRVMAVNARGAALVARHVARAMIAAGRGGSIVNVSSQAALVGL------------PD 146 (245)
T ss_pred CEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCcEEEEEccHHHcCCC------------CC
Confidence 9999999974321 223445567889999999999987653 222489999997665432 23
Q ss_pred CChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceEecccHH
Q 012176 267 ASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYID 343 (469)
Q Consensus 267 ~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~ 343 (469)
...|+.+|.++|.+++.++.++ +++++.+|||.++++..............+... .....+++++
T Consensus 147 ~~~y~~sK~a~~~~~~~~a~~~~~~~i~v~~v~pg~v~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~ 214 (245)
T PRK07060 147 HLAYCASKAALDAITRVLCVELGPHGIRVNSVNPTVTLTPMAAEAWSDPQKSGPMLAA------------IPLGRFAEVD 214 (245)
T ss_pred CcHhHHHHHHHHHHHHHHHHHHhhhCeEEEEEeeCCCCCchhhhhccCHHHHHHHHhc------------CCCCCCCCHH
Confidence 4679999999999999998754 799999999999998532110001111111111 1123488999
Q ss_pred HHHHHHHHHhccCCCCCCCCCceEEEeCCCC
Q 012176 344 DVVKGCVGATGSGGKKRGPAQLRVYNLGNTS 374 (469)
Q Consensus 344 Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~ 374 (469)
|++++++.++..+.. ...|+++++.++.
T Consensus 215 d~a~~~~~l~~~~~~---~~~G~~~~~~~g~ 242 (245)
T PRK07060 215 DVAAPILFLLSDAAS---MVSGVSLPVDGGY 242 (245)
T ss_pred HHHHHHHHHcCcccC---CccCcEEeECCCc
Confidence 999999999876532 3456899988764
|
|
| >KOG1221 consensus Acyl-CoA reductase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.86 E-value=8.6e-21 Score=191.25 Aligned_cols=266 Identities=18% Similarity=0.193 Sum_probs=190.6
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCC---CcEEEEeCCCCCCChhH--HHHH-----HHhhc-----cCCeEEEEecCC
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRG---DGVLGLDNFNSYYDPSL--KRAR-----QKLLQ-----KHQVFIVEGDLN 180 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G---~~V~~~~r~~~~~~~~~--~~~~-----~~~~~-----~~~v~~v~~Dl~ 180 (469)
..+|+|+|||||||+|..+++.|++.- -+++++.|.+..-+... .... ....+ ..++..+.||+.
T Consensus 10 ~~~k~i~vTG~tGFlgKVliEklLr~~p~v~~IYlLiR~k~g~~~~~Rl~~~~~~~lF~~l~~~~p~~l~Kv~pi~GDi~ 89 (467)
T KOG1221|consen 10 YKNKTIFVTGATGFLGKVLIEKLLRTTPDVKRIYLLIRAKKGKAAQERLRTELKDPLFEVLKEKKPEALEKVVPIAGDIS 89 (467)
T ss_pred hCCCeEEEEcccchhHHHHHHHHHhcCcCcceEEEEEecCCCCCHHHHHHHHHhhhHHHHHHhhCccceecceecccccc
Confidence 578999999999999999999999874 37899999876554321 1111 11112 248999999998
Q ss_pred CH------HHHHHhhccCCccEEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcCccccCCC--
Q 012176 181 DA------PLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLN-- 252 (469)
Q Consensus 181 d~------~~l~~~~~~~~~d~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS~~vyg~~-- 252 (469)
++ .+++.+.+++ |+|||+||...++ +..+....+|..|++++++.|++......+|++|++.+....
T Consensus 90 ~~~LGis~~D~~~l~~eV--~ivih~AAtvrFd---e~l~~al~iNt~Gt~~~l~lak~~~~l~~~vhVSTAy~n~~~~~ 164 (467)
T KOG1221|consen 90 EPDLGISESDLRTLADEV--NIVIHSAATVRFD---EPLDVALGINTRGTRNVLQLAKEMVKLKALVHVSTAYSNCNVGH 164 (467)
T ss_pred CcccCCChHHHHHHHhcC--CEEEEeeeeeccc---hhhhhhhhhhhHhHHHHHHHHHHhhhhheEEEeehhheeccccc
Confidence 65 4466677777 9999999986654 555678899999999999999998766699999998765211
Q ss_pred -CCCCCCCCC--C-----------------------CCCCCChHHHHHHHHHHHHHHHHHHhCCcEEEEeecceecCCCC
Q 012176 253 -TQVPFSESH--R-----------------------TDQPASLYAATKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGR 306 (469)
Q Consensus 253 -~~~~~~E~~--~-----------------------~~~p~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~Gp~~~ 306 (469)
.+.++.+.. . .....+-|.-+|+.+|+++.+.++ +++++|+||+.|...+..
T Consensus 165 i~E~~y~~~~~~~~~~~i~~~~~~~~~~ld~~~~~l~~~~PNTYtfTKal~E~~i~~~~~--~lPivIiRPsiI~st~~E 242 (467)
T KOG1221|consen 165 IEEKPYPMPETCNPEKILKLDENLSDELLDQKAPKLLGGWPNTYTFTKALAEMVIQKEAE--NLPLVIIRPSIITSTYKE 242 (467)
T ss_pred ccccccCccccCCHHHHHhhhccchHHHHHHhhHHhcCCCCCceeehHhhHHHHHHhhcc--CCCeEEEcCCceeccccC
Confidence 122222211 0 002235699999999999999875 899999999999997665
Q ss_pred CCChH-------HHHHHHHHcCCceEEEeeCCCCcceEecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCC--ccc
Q 012176 307 PDMAY-------FFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTS--PVP 377 (469)
Q Consensus 307 ~~~~~-------~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~--~vt 377 (469)
|-..| ..++-.+.+|.--.+. .+.+...|+++||.|+.+++.+........+.....+||+++++ +++
T Consensus 243 P~pGWidn~~gp~g~i~g~gkGvlr~~~---~d~~~~adiIPvD~vvN~~ia~~~~~~~~~~~~~~~IY~~tss~~Np~t 319 (467)
T KOG1221|consen 243 PFPGWIDNLNGPDGVIIGYGKGVLRCFL---VDPKAVADIIPVDMVVNAMIASAWQHAGNSKEKTPPIYHLTSSNDNPVT 319 (467)
T ss_pred CCCCccccCCCCceEEEEeccceEEEEE---EccccccceeeHHHHHHHHHHHHHHHhccCCCCCCcEEEecccccCccc
Confidence 43221 1222233344444444 66889999999999999999775332211111335799999844 899
Q ss_pred HHHHHHHHHHHhCC
Q 012176 378 VGRLVSILENLLNT 391 (469)
Q Consensus 378 ~~el~~~i~~~~g~ 391 (469)
|.++++...+....
T Consensus 320 ~~~~~e~~~~~~~~ 333 (467)
T KOG1221|consen 320 WGDFIELALRYFEK 333 (467)
T ss_pred HHHHHHHHHHhccc
Confidence 99999999999864
|
|
| >TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.8e-20 Score=175.87 Aligned_cols=225 Identities=12% Similarity=0.059 Sum_probs=159.8
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhc-cCCeEEEEecCCCHHHHHHhhccC---
Q 012176 117 NGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQ-KHQVFIVEGDLNDAPLLTKLFDVV--- 192 (469)
Q Consensus 117 ~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~v~~v~~Dl~d~~~l~~~~~~~--- 192 (469)
+++++|||||+|+||++++++|+++|++|++++|+.. ...+....... ..++.++.+|+.|.++++++++..
T Consensus 2 ~~~~ilItGas~~iG~~la~~l~~~g~~v~~~~r~~~----~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 77 (250)
T TIGR03206 2 KDKTAIVTGGGGGIGGATCRRFAEEGAKVAVFDLNRE----AAEKVAADIRAKGGNAQAFACDITDRDSVDTAVAAAEQA 77 (250)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEecCCHH----HHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 4689999999999999999999999999999998542 11111111111 346899999999999998888743
Q ss_pred --CccEEEEcccccChh----hhccChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEEcCccccCCCCCCCCCCCCC
Q 012176 193 --PFTHVLHLAAQAGVR----YAMQNPQSYVASNIAGFVNLLEVCK----SVNPQPSIVWASSSSVYGLNTQVPFSESHR 262 (469)
Q Consensus 193 --~~d~Vih~Aa~~~~~----~~~~~~~~~~~~Nv~~~~~ll~aa~----~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~ 262 (469)
++|+|||++|..... ...+..+..+++|+.++.++++++. +.+.. +||++||.+.+.+.
T Consensus 78 ~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~-~ii~iss~~~~~~~---------- 146 (250)
T TIGR03206 78 LGPVDVLVNNAGWDKFGPFTKTEPPLWERLIAINLTGALHMHHAVLPGMVERGAG-RIVNIASDAARVGS---------- 146 (250)
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCe-EEEEECchhhccCC----------
Confidence 479999999864321 1223345679999999999988764 34443 89999998877543
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCCCC----ChHHHHHHHHHcCCceEEEeeCCCCcc
Q 012176 263 TDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPD----MAYFFFTKDILQGKTIDVYKTQDDREV 335 (469)
Q Consensus 263 ~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~~~----~~~~~~~~~~~~g~~~~~~~~~~~~~~ 335 (469)
.....|+.+|.+.+.+++.++.++ +++++++|||.++++..... .....+...+....+.
T Consensus 147 --~~~~~Y~~sK~a~~~~~~~la~~~~~~~i~v~~v~pg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 213 (250)
T TIGR03206 147 --SGEAVYAACKGGLVAFSKTMAREHARHGITVNVVCPGPTDTALLDDICGGAENPEKLREAFTRAIPL----------- 213 (250)
T ss_pred --CCCchHHHHHHHHHHHHHHHHHHHhHhCcEEEEEecCcccchhHHhhhhccCChHHHHHHHHhcCCc-----------
Confidence 234679999999999999988764 89999999999998742210 0001122222222221
Q ss_pred eEecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCC
Q 012176 336 ARDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNT 373 (469)
Q Consensus 336 ~~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~ 373 (469)
..+...+|+|+++..++..... ...|+++++.++
T Consensus 214 -~~~~~~~dva~~~~~l~~~~~~---~~~g~~~~~~~g 247 (250)
T TIGR03206 214 -GRLGQPDDLPGAILFFSSDDAS---FITGQVLSVSGG 247 (250)
T ss_pred -cCCcCHHHHHHHHHHHcCcccC---CCcCcEEEeCCC
Confidence 1245679999999998765422 345689999876
|
Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate. |
| >PRK07985 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.3e-19 Score=178.26 Aligned_cols=230 Identities=14% Similarity=0.057 Sum_probs=161.6
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhh-ccCCeEEEEecCCCHHHHHHhhccC--
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLL-QKHQVFIVEGDLNDAPLLTKLFDVV-- 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~v~~v~~Dl~d~~~l~~~~~~~-- 192 (469)
.++++++||||+|+||.+++++|+++|++|+++.|..... .......... ....+.++.+|++|.+++.++++.+
T Consensus 47 ~~~k~vlITGas~gIG~aia~~L~~~G~~Vi~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 124 (294)
T PRK07985 47 LKDRKALVTGGDSGIGRAAAIAYAREGADVAISYLPVEEE--DAQDVKKIIEECGRKAVLLPGDLSDEKFARSLVHEAHK 124 (294)
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHHCCCEEEEecCCcchh--hHHHHHHHHHHcCCeEEEEEccCCCHHHHHHHHHHHHH
Confidence 5678999999999999999999999999999887643211 1111111111 1235778999999999988877653
Q ss_pred ---CccEEEEcccccCh-----hhhccChHHHHHHHHHHHHHHHHHHHhc-CCCCeEEEEcCccccCCCCCCCCCCCCCC
Q 012176 193 ---PFTHVLHLAAQAGV-----RYAMQNPQSYVASNIAGFVNLLEVCKSV-NPQPSIVWASSSSVYGLNTQVPFSESHRT 263 (469)
Q Consensus 193 ---~~d~Vih~Aa~~~~-----~~~~~~~~~~~~~Nv~~~~~ll~aa~~~-~~~~~~V~~SS~~vyg~~~~~~~~E~~~~ 263 (469)
++|++|||||.... ..+.++++..+++|+.++..+++++... ....+||++||...+.+.
T Consensus 125 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~iSS~~~~~~~----------- 193 (294)
T PRK07985 125 ALGGLDIMALVAGKQVAIPDIADLTSEQFQKTFAINVFALFWLTQEAIPLLPKGASIITTSSIQAYQPS----------- 193 (294)
T ss_pred HhCCCCEEEECCCCCcCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhhcCCEEEEECCchhccCC-----------
Confidence 57999999986321 2234566788999999999999988653 122489999998877532
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceEecc
Q 012176 264 DQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFT 340 (469)
Q Consensus 264 ~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v 340 (469)
.....|+.+|.+.+.+++.++.+ +|+++++|+||.|++|..............+....++ ..+.
T Consensus 194 -~~~~~Y~asKaal~~l~~~la~el~~~gIrvn~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~------------~r~~ 260 (294)
T PRK07985 194 -PHLLDYAATKAAILNYSRGLAKQVAEKGIRVNIVAPGPIWTALQISGGQTQDKIPQFGQQTPM------------KRAG 260 (294)
T ss_pred -CCcchhHHHHHHHHHHHHHHHHHHhHhCcEEEEEECCcCccccccccCCCHHHHHHHhccCCC------------CCCC
Confidence 23457999999999999999876 4899999999999998532111111122222222111 2345
Q ss_pred cHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCC
Q 012176 341 YIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTS 374 (469)
Q Consensus 341 ~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~ 374 (469)
.++|+|++++.++..... -..|.++.+.++.
T Consensus 261 ~pedva~~~~fL~s~~~~---~itG~~i~vdgG~ 291 (294)
T PRK07985 261 QPAELAPVYVYLASQESS---YVTAEVHGVCGGE 291 (294)
T ss_pred CHHHHHHHHHhhhChhcC---CccccEEeeCCCe
Confidence 689999999998865432 2345888887764
|
|
| >PRK06701 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.5e-19 Score=177.35 Aligned_cols=229 Identities=12% Similarity=0.130 Sum_probs=164.9
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhh-ccCCeEEEEecCCCHHHHHHhhccC-
Q 012176 115 RPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLL-QKHQVFIVEGDLNDAPLLTKLFDVV- 192 (469)
Q Consensus 115 ~~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~v~~v~~Dl~d~~~l~~~~~~~- 192 (469)
..++|+||||||+|+||.+++++|+++|++|++++|..... ......... ...++.++.+|++|.+.++++++..
T Consensus 43 ~~~~k~iLItGasggIG~~la~~l~~~G~~V~l~~r~~~~~---~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~i~ 119 (290)
T PRK06701 43 KLKGKVALITGGDSGIGRAVAVLFAKEGADIAIVYLDEHED---ANETKQRVEKEGVKCLLIPGDVSDEAFCKDAVEETV 119 (290)
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchH---HHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHH
Confidence 35678999999999999999999999999999999865321 111111111 1236889999999999998888753
Q ss_pred ----CccEEEEcccccChh-----hhccChHHHHHHHHHHHHHHHHHHHhc-CCCCeEEEEcCccccCCCCCCCCCCCCC
Q 012176 193 ----PFTHVLHLAAQAGVR-----YAMQNPQSYVASNIAGFVNLLEVCKSV-NPQPSIVWASSSSVYGLNTQVPFSESHR 262 (469)
Q Consensus 193 ----~~d~Vih~Aa~~~~~-----~~~~~~~~~~~~Nv~~~~~ll~aa~~~-~~~~~~V~~SS~~vyg~~~~~~~~E~~~ 262 (469)
++|+||||||..... ...++....+++|+.++.++++++... ...++||++||...|.+.
T Consensus 120 ~~~~~iD~lI~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~a~~~~~~~~g~iV~isS~~~~~~~---------- 189 (290)
T PRK06701 120 RELGRLDILVNNAAFQYPQQSLEDITAEQLDKTFKTNIYSYFHMTKAALPHLKQGSAIINTGSITGYEGN---------- 189 (290)
T ss_pred HHcCCCCEEEECCcccCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHhhCCeEEEEecccccCCC----------
Confidence 679999999974321 122344678999999999999998653 122489999998877543
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceEec
Q 012176 263 TDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDF 339 (469)
Q Consensus 263 ~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 339 (469)
.....|+.+|.+.+.+++.++.++ |++++.|+||.|+.+....... .......... .....+
T Consensus 190 --~~~~~Y~~sK~a~~~l~~~la~~~~~~gIrv~~i~pG~v~T~~~~~~~~-~~~~~~~~~~------------~~~~~~ 254 (290)
T PRK06701 190 --ETLIDYSATKGAIHAFTRSLAQSLVQKGIRVNAVAPGPIWTPLIPSDFD-EEKVSQFGSN------------TPMQRP 254 (290)
T ss_pred --CCcchhHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCCCCCcccccccC-HHHHHHHHhc------------CCcCCC
Confidence 223569999999999999999875 8999999999999874332111 1112222111 122457
Q ss_pred ccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCC
Q 012176 340 TYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTS 374 (469)
Q Consensus 340 v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~ 374 (469)
.+++|+|++++.++..... ...|.+|++.++.
T Consensus 255 ~~~~dva~~~~~ll~~~~~---~~~G~~i~idgg~ 286 (290)
T PRK06701 255 GQPEELAPAYVFLASPDSS---YITGQMLHVNGGV 286 (290)
T ss_pred cCHHHHHHHHHHHcCcccC---CccCcEEEeCCCc
Confidence 8899999999999876532 2346888888764
|
|
| >PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.8e-20 Score=175.75 Aligned_cols=227 Identities=22% Similarity=0.188 Sum_probs=162.3
Q ss_pred EEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCccEEEEc
Q 012176 121 VLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTHVLHL 200 (469)
Q Consensus 121 VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~d~Vih~ 200 (469)
|+|+||||.+|+++++.|++.|++|+++.|+. .......+...+++++.+|+.|.+++.++|+++ |+||.+
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~~~V~~l~R~~-------~~~~~~~l~~~g~~vv~~d~~~~~~l~~al~g~--d~v~~~ 71 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAGFSVRALVRDP-------SSDRAQQLQALGAEVVEADYDDPESLVAALKGV--DAVFSV 71 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTGCEEEEESSS-------HHHHHHHHHHTTTEEEES-TT-HHHHHHHHTTC--SEEEEE
T ss_pred CEEECCccHHHHHHHHHHHhCCCCcEEEEecc-------chhhhhhhhcccceEeecccCCHHHHHHHHcCC--ceEEee
Confidence 79999999999999999999999999999954 222333344568999999999999999999999 999998
Q ss_pred ccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcCccccCCCCCCCCCCCCCCCCCCChHHHHHHHHHHH
Q 012176 201 AAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEI 280 (469)
Q Consensus 201 Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y~~sK~~~E~~ 280 (469)
.+.... ..+....++++||+++|++ +||+.|-...+. +.... .|....-..|...|++
T Consensus 72 ~~~~~~------------~~~~~~~~li~Aa~~agVk-~~v~ss~~~~~~--------~~~~~-~p~~~~~~~k~~ie~~ 129 (233)
T PF05368_consen 72 TPPSHP------------SELEQQKNLIDAAKAAGVK-HFVPSSFGADYD--------ESSGS-EPEIPHFDQKAEIEEY 129 (233)
T ss_dssp SSCSCC------------CHHHHHHHHHHHHHHHT-S-EEEESEESSGTT--------TTTTS-TTHHHHHHHHHHHHHH
T ss_pred cCcchh------------hhhhhhhhHHHhhhccccc-eEEEEEeccccc--------ccccc-cccchhhhhhhhhhhh
Confidence 875321 1455678999999999987 998654333331 11011 2334455678888887
Q ss_pred HHHHHHHhCCcEEEEeecceecCCCCCCChHHHHHHH-HHcC-C-ceEEEeeCCCCcceEecc-cHHHHHHHHHHHhccC
Q 012176 281 AHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTKD-ILQG-K-TIDVYKTQDDREVARDFT-YIDDVVKGCVGATGSG 356 (469)
Q Consensus 281 ~~~~~~~~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~-~~~g-~-~~~~~~~~~~~~~~~~~v-~v~Dva~~~~~~~~~~ 356 (469)
+++ .++++++||+|..+...... +... .... . .+.++ ++++....++ +.+|+++++..++.++
T Consensus 130 l~~----~~i~~t~i~~g~f~e~~~~~------~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~Dvg~~va~il~~p 196 (233)
T PF05368_consen 130 LRE----SGIPYTIIRPGFFMENLLPP------FAPVVDIKKSKDVVTLP---GPGNQKAVPVTDTRDVGRAVAAILLDP 196 (233)
T ss_dssp HHH----CTSEBEEEEE-EEHHHHHTT------THHTTCSCCTSSEEEEE---TTSTSEEEEEEHHHHHHHHHHHHHHSG
T ss_pred hhh----ccccceeccccchhhhhhhh------hcccccccccceEEEEc---cCCCccccccccHHHHHHHHHHHHcCh
Confidence 776 49999999999876531110 1110 1112 1 34455 5677666775 9999999999999887
Q ss_pred CCCCCCCCceEEEeCCCCcccHHHHHHHHHHHhCCCccc
Q 012176 357 GKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKK 395 (469)
Q Consensus 357 ~~~~~~~~~~iyni~~~~~vt~~el~~~i~~~~g~~~~~ 395 (469)
... ..++.+.+++ +.+|+.|+++.+++.+|++.++
T Consensus 197 ~~~---~~~~~~~~~~-~~~t~~eia~~~s~~~G~~v~y 231 (233)
T PF05368_consen 197 EKH---NNGKTIFLAG-ETLTYNEIAAILSKVLGKKVKY 231 (233)
T ss_dssp GGT---TEEEEEEEGG-GEEEHHHHHHHHHHHHTSEEEE
T ss_pred HHh---cCCEEEEeCC-CCCCHHHHHHHHHHHHCCccEE
Confidence 431 1458888876 6799999999999999998654
|
NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B .... |
| >PRK06500 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.6e-19 Score=172.66 Aligned_cols=224 Identities=19% Similarity=0.174 Sum_probs=157.5
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccC---
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~--- 192 (469)
.++++|+||||+|+||++++++|+++|++|++++|+.+ ......... ...+.++.+|++|.+++.++++.+
T Consensus 4 ~~~k~vlItGasg~iG~~la~~l~~~g~~v~~~~r~~~----~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~ 77 (249)
T PRK06500 4 LQGKTALITGGTSGIGLETARQFLAEGARVAITGRDPA----SLEAARAEL--GESALVIRADAGDVAAQKALAQALAEA 77 (249)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCCHH----HHHHHHHHh--CCceEEEEecCCCHHHHHHHHHHHHHH
Confidence 45789999999999999999999999999999998532 111111111 236788999999998887766532
Q ss_pred --CccEEEEcccccCh----hhhccChHHHHHHHHHHHHHHHHHHHhc-CCCCeEEEEcCc-cccCCCCCCCCCCCCCCC
Q 012176 193 --PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCKSV-NPQPSIVWASSS-SVYGLNTQVPFSESHRTD 264 (469)
Q Consensus 193 --~~d~Vih~Aa~~~~----~~~~~~~~~~~~~Nv~~~~~ll~aa~~~-~~~~~~V~~SS~-~vyg~~~~~~~~E~~~~~ 264 (469)
++|+||||||.... ....++++..+++|+.++.++++++... ....++|++||. +.|+.
T Consensus 78 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~i~~~S~~~~~~~------------- 144 (249)
T PRK06500 78 FGRLDAVFINAGVAKFAPLEDWDEAMFDRSFNTNVKGPYFLIQALLPLLANPASIVLNGSINAHIGM------------- 144 (249)
T ss_pred hCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEechHhccCC-------------
Confidence 57999999997432 2234556688999999999999998742 112378888774 44442
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCC----CCChHHHHHHHHHcCCceEEEeeCCCCcceE
Q 012176 265 QPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGR----PDMAYFFFTKDILQGKTIDVYKTQDDREVAR 337 (469)
Q Consensus 265 ~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~----~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 337 (469)
...+.|+.+|.+.|.+++.++.++ |++++++|||.+++|... .......+.+.+..+.++.
T Consensus 145 ~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~i~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 212 (249)
T PRK06500 145 PNSSVYAASKAALLSLAKTLSGELLPRGIRVNAVSPGPVQTPLYGKLGLPEATLDAVAAQIQALVPLG------------ 212 (249)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcCCCHHHHhhccCccchHHHHHHHHhcCCCC------------
Confidence 235789999999999999888664 899999999999998321 1122233444444443322
Q ss_pred ecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCC
Q 012176 338 DFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNT 373 (469)
Q Consensus 338 ~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~ 373 (469)
-+..++|++++++.++..... -..|..+.+.++
T Consensus 213 ~~~~~~~va~~~~~l~~~~~~---~~~g~~i~~~gg 245 (249)
T PRK06500 213 RFGTPEEIAKAVLYLASDESA---FIVGSEIIVDGG 245 (249)
T ss_pred CCcCHHHHHHHHHHHcCcccc---CccCCeEEECCC
Confidence 134789999999998865421 223455555554
|
|
| >PRK05717 oxidoreductase; Validated | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.2e-19 Score=172.74 Aligned_cols=227 Identities=16% Similarity=0.077 Sum_probs=158.1
Q ss_pred CCCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccC-
Q 012176 114 RRPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV- 192 (469)
Q Consensus 114 ~~~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~- 192 (469)
.+.++|+|+||||+|+||+++++.|+++|++|++++|.... ....... . ...+.++.+|++|.+++.++++..
T Consensus 6 ~~~~~k~vlItG~sg~IG~~~a~~l~~~g~~v~~~~~~~~~----~~~~~~~-~-~~~~~~~~~Dl~~~~~~~~~~~~~~ 79 (255)
T PRK05717 6 PGHNGRVALVTGAARGIGLGIAAWLIAEGWQVVLADLDRER----GSKVAKA-L-GENAWFIAMDVADEAQVAAGVAEVL 79 (255)
T ss_pred cccCCCEEEEeCCcchHHHHHHHHHHHcCCEEEEEcCCHHH----HHHHHHH-c-CCceEEEEccCCCHHHHHHHHHHHH
Confidence 44678999999999999999999999999999999874321 1111111 1 236889999999999887766543
Q ss_pred ----CccEEEEcccccChh------hhccChHHHHHHHHHHHHHHHHHHHhc--CCCCeEEEEcCccccCCCCCCCCCCC
Q 012176 193 ----PFTHVLHLAAQAGVR------YAMQNPQSYVASNIAGFVNLLEVCKSV--NPQPSIVWASSSSVYGLNTQVPFSES 260 (469)
Q Consensus 193 ----~~d~Vih~Aa~~~~~------~~~~~~~~~~~~Nv~~~~~ll~aa~~~--~~~~~~V~~SS~~vyg~~~~~~~~E~ 260 (469)
++|+||||||..... ...++++..+++|+.++.++++++... ....+||++||...+.+.
T Consensus 80 ~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~g~ii~~sS~~~~~~~-------- 151 (255)
T PRK05717 80 GQFGRLDALVCNAAIADPHNTTLESLSLAHWNRVLAVNLTGPMLLAKHCAPYLRAHNGAIVNLASTRARQSE-------- 151 (255)
T ss_pred HHhCCCCEEEECCCcccCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCcEEEEEcchhhcCCC--------
Confidence 579999999975321 123445688999999999999998642 112389999997655322
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHh--CCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceEe
Q 012176 261 HRTDQPASLYAATKKAGEEIAHTYNHIY--GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARD 338 (469)
Q Consensus 261 ~~~~~p~~~Y~~sK~~~E~~~~~~~~~~--gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 338 (469)
.....|+.+|.+.|.+++.++.++ ++++++++||.+.++....... ..+........+ ...
T Consensus 152 ----~~~~~Y~~sKaa~~~~~~~la~~~~~~i~v~~i~Pg~i~t~~~~~~~~-~~~~~~~~~~~~------------~~~ 214 (255)
T PRK05717 152 ----PDTEAYAASKGGLLALTHALAISLGPEIRVNAVSPGWIDARDPSQRRA-EPLSEADHAQHP------------AGR 214 (255)
T ss_pred ----CCCcchHHHHHHHHHHHHHHHHHhcCCCEEEEEecccCcCCccccccc-hHHHHHHhhcCC------------CCC
Confidence 224579999999999999999886 4999999999999874321111 111111000011 123
Q ss_pred cccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCC
Q 012176 339 FTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTS 374 (469)
Q Consensus 339 ~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~ 374 (469)
+.+++|++.++..++..... ...|+++.+.++.
T Consensus 215 ~~~~~~va~~~~~l~~~~~~---~~~g~~~~~~gg~ 247 (255)
T PRK05717 215 VGTVEDVAAMVAWLLSRQAG---FVTGQEFVVDGGM 247 (255)
T ss_pred CcCHHHHHHHHHHHcCchhc---CccCcEEEECCCc
Confidence 67899999999888754321 2345777776653
|
|
| >PRK06123 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.1e-19 Score=173.90 Aligned_cols=225 Identities=16% Similarity=0.106 Sum_probs=156.1
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhc-cCCeEEEEecCCCHHHHHHhhccC----
Q 012176 118 GMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQ-KHQVFIVEGDLNDAPLLTKLFDVV---- 192 (469)
Q Consensus 118 ~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~v~~v~~Dl~d~~~l~~~~~~~---- 192 (469)
+++++||||+|+||.+++++|+++|+.|++..+... ............ ...+.++.+|++|.++++++++..
T Consensus 2 ~~~~lVtG~~~~iG~~~a~~l~~~G~~vv~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 78 (248)
T PRK06123 2 RKVMIITGASRGIGAATALLAAERGYAVCLNYLRNR---DAAEAVVQAIRRQGGEALAVAADVADEADVLRLFEAVDREL 78 (248)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCeEEEecCCCH---HHHHHHHHHHHhCCCcEEEEEeccCCHHHHHHHHHHHHHHh
Confidence 368999999999999999999999999888765332 111111111111 235788999999999999888753
Q ss_pred -CccEEEEcccccChh-----hhccChHHHHHHHHHHHHHHHHHHHhc------CCCCeEEEEcCccc-cCCCCCCCCCC
Q 012176 193 -PFTHVLHLAAQAGVR-----YAMQNPQSYVASNIAGFVNLLEVCKSV------NPQPSIVWASSSSV-YGLNTQVPFSE 259 (469)
Q Consensus 193 -~~d~Vih~Aa~~~~~-----~~~~~~~~~~~~Nv~~~~~ll~aa~~~------~~~~~~V~~SS~~v-yg~~~~~~~~E 259 (469)
++|+||||||..... ...++.+..+++|+.++.++++++... +..++||++||.+. ++..
T Consensus 79 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~~------- 151 (248)
T PRK06123 79 GRLDALVNNAGILEAQMRLEQMDAARLTRIFATNVVGSFLCAREAVKRMSTRHGGRGGAIVNVSSMAARLGSP------- 151 (248)
T ss_pred CCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCCeEEEEECchhhcCCCC-------
Confidence 579999999975322 123345578999999999999887543 11237999999654 4321
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcce
Q 012176 260 SHRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVA 336 (469)
Q Consensus 260 ~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 336 (469)
.....|+.+|.+.|.+++.++.++ |+++++||||.|++|...... .+.+...+....++..
T Consensus 152 -----~~~~~Y~~sKaa~~~~~~~la~~~~~~~i~v~~i~pg~v~~~~~~~~~-~~~~~~~~~~~~p~~~---------- 215 (248)
T PRK06123 152 -----GEYIDYAASKGAIDTMTIGLAKEVAAEGIRVNAVRPGVIYTEIHASGG-EPGRVDRVKAGIPMGR---------- 215 (248)
T ss_pred -----CCccchHHHHHHHHHHHHHHHHHhcccCeEEEEEecCcccCchhhccC-CHHHHHHHHhcCCCCC----------
Confidence 112359999999999999998765 899999999999998533211 1223333332323211
Q ss_pred EecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCC
Q 012176 337 RDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNT 373 (469)
Q Consensus 337 ~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~ 373 (469)
+.+++|++++++.++..... ...|++|++.++
T Consensus 216 --~~~~~d~a~~~~~l~~~~~~---~~~g~~~~~~gg 247 (248)
T PRK06123 216 --GGTAEEVARAILWLLSDEAS---YTTGTFIDVSGG 247 (248)
T ss_pred --CcCHHHHHHHHHHHhCcccc---CccCCEEeecCC
Confidence 24689999999998765422 234689998765
|
|
| >TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.7e-19 Score=171.18 Aligned_cols=226 Identities=14% Similarity=0.111 Sum_probs=159.1
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccC---
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~--- 192 (469)
.++|+|+||||+|+||.+++++|+++|++|++++|... ......... ....+.++.+|++|.+++.++++..
T Consensus 3 ~~~k~vlItGas~gIG~~ia~~l~~~G~~vi~~~r~~~---~~~~~~~~~--~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 77 (248)
T TIGR01832 3 LEGKVALVTGANTGLGQGIAVGLAEAGADIVGAGRSEP---SETQQQVEA--LGRRFLSLTADLSDIEAIKALVDSAVEE 77 (248)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCchH---HHHHHHHHh--cCCceEEEECCCCCHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999998431 111111111 1236889999999999998777642
Q ss_pred --CccEEEEcccccChh----hhccChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEEcCccccCCCCCCCCCCCCC
Q 012176 193 --PFTHVLHLAAQAGVR----YAMQNPQSYVASNIAGFVNLLEVCKS----VNPQPSIVWASSSSVYGLNTQVPFSESHR 262 (469)
Q Consensus 193 --~~d~Vih~Aa~~~~~----~~~~~~~~~~~~Nv~~~~~ll~aa~~----~~~~~~~V~~SS~~vyg~~~~~~~~E~~~ 262 (469)
++|+||||||..... ...++.++.+++|+.++..+++++.. .+..+++|++||...+.+.
T Consensus 78 ~~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~---------- 147 (248)
T TIGR01832 78 FGHIDILVNNAGIIRRADAEEFSEKDWDDVMNVNLKSVFFLTQAAAKHFLKQGRGGKIINIASMLSFQGG---------- 147 (248)
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCeEEEEEecHHhccCC----------
Confidence 589999999974321 22345567899999999999998753 3323489999998877533
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceEec
Q 012176 263 TDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDF 339 (469)
Q Consensus 263 ~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 339 (469)
.....|+.+|.+.+.+++.++.++ |+++++++||.|..+..............+.... ....+
T Consensus 148 --~~~~~Y~~sKaa~~~~~~~la~e~~~~gi~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~~~------------~~~~~ 213 (248)
T TIGR01832 148 --IRVPSYTASKHGVAGLTKLLANEWAAKGINVNAIAPGYMATNNTQALRADEDRNAAILERI------------PAGRW 213 (248)
T ss_pred --CCCchhHHHHHHHHHHHHHHHHHhCccCcEEEEEEECcCcCcchhccccChHHHHHHHhcC------------CCCCC
Confidence 123569999999999999999875 8999999999998874321100001111111111 12357
Q ss_pred ccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCC
Q 012176 340 TYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNT 373 (469)
Q Consensus 340 v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~ 373 (469)
+.++|+|++++.++..... ...|+++.+.++
T Consensus 214 ~~~~dva~~~~~l~s~~~~---~~~G~~i~~dgg 244 (248)
T TIGR01832 214 GTPDDIGGPAVFLASSASD---YVNGYTLAVDGG 244 (248)
T ss_pred cCHHHHHHHHHHHcCcccc---CcCCcEEEeCCC
Confidence 8899999999999865422 234567666554
|
This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation. |
| >PRK06182 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.3e-19 Score=176.11 Aligned_cols=217 Identities=17% Similarity=0.151 Sum_probs=151.4
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccC----
Q 012176 117 NGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV---- 192 (469)
Q Consensus 117 ~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~---- 192 (469)
++++|+||||+|+||++++++|+++|++|++++|+.+ .+.. ....+++++.+|++|.++++++++.+
T Consensus 2 ~~k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~----~l~~-----~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~ 72 (273)
T PRK06182 2 QKKVALVTGASSGIGKATARRLAAQGYTVYGAARRVD----KMED-----LASLGVHPLSLDVTDEASIKAAVDTIIAEE 72 (273)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHH----HHHH-----HHhCCCeEEEeeCCCHHHHHHHHHHHHHhc
Confidence 4689999999999999999999999999999998542 1111 11236889999999999998888743
Q ss_pred -CccEEEEcccccChh----hhccChHHHHHHHHHHHHHHHH----HHHhcCCCCeEEEEcCccccCCCCCCCCCCCCCC
Q 012176 193 -PFTHVLHLAAQAGVR----YAMQNPQSYVASNIAGFVNLLE----VCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRT 263 (469)
Q Consensus 193 -~~d~Vih~Aa~~~~~----~~~~~~~~~~~~Nv~~~~~ll~----aa~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~ 263 (469)
++|+||||||..... ...++++..+++|+.++..+++ .+++.+.. +||++||.+.+...
T Consensus 73 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~g-~iv~isS~~~~~~~----------- 140 (273)
T PRK06182 73 GRIDVLVNNAGYGSYGAIEDVPIDEARRQFEVNLFGAARLTQLVLPHMRAQRSG-RIINISSMGGKIYT----------- 140 (273)
T ss_pred CCCCEEEECCCcCCCCchhhCCHHHHHHHHhHHhHHHHHHHHHHHHHHHhcCCC-EEEEEcchhhcCCC-----------
Confidence 679999999974322 2334567789999998655554 55566654 99999996543211
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeecceecCCCCCC----------ChHHH----HHHHHHcCCceEE
Q 012176 264 DQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPD----------MAYFF----FTKDILQGKTIDV 326 (469)
Q Consensus 264 ~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~Gp~~~~~----------~~~~~----~~~~~~~g~~~~~ 326 (469)
.....|+.+|.+.+.+++.++.+ +|++++++|||.|.++..... ..+.. +...+..
T Consensus 141 -~~~~~Y~~sKaa~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 213 (273)
T PRK06182 141 -PLGAWYHATKFALEGFSDALRLEVAPFGIDVVVIEPGGIKTEWGDIAADHLLKTSGNGAYAEQAQAVAASMRS------ 213 (273)
T ss_pred -CCccHhHHHHHHHHHHHHHHHHHhcccCCEEEEEecCCcccccchhhhhhhcccccccchHHHHHHHHHHHHH------
Confidence 22356999999999998887754 589999999999988743210 00000 0011110
Q ss_pred EeeCCCCcceEecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCC
Q 012176 327 YKTQDDREVARDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNT 373 (469)
Q Consensus 327 ~~~~~~~~~~~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~ 373 (469)
......+..++|+|++++.++..... ...|+++.+
T Consensus 214 ------~~~~~~~~~~~~vA~~i~~~~~~~~~------~~~~~~g~~ 248 (273)
T PRK06182 214 ------TYGSGRLSDPSVIADAISKAVTARRP------KTRYAVGFG 248 (273)
T ss_pred ------hhccccCCCHHHHHHHHHHHHhCCCC------CceeecCcc
Confidence 01123467899999999999875321 156776654
|
|
| >PRK06841 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.1e-19 Score=171.52 Aligned_cols=225 Identities=13% Similarity=0.084 Sum_probs=161.2
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccC---
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~--- 192 (469)
..+++||||||+|+||.++++.|+++|++|++++|+.. ...... ......+..+.+|++|+++++++++..
T Consensus 13 ~~~k~vlItGas~~IG~~la~~l~~~G~~Vi~~~r~~~-----~~~~~~-~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 86 (255)
T PRK06841 13 LSGKVAVVTGGASGIGHAIAELFAAKGARVALLDRSED-----VAEVAA-QLLGGNAKGLVCDVSDSQSVEAAVAAVISA 86 (255)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHH-----HHHHHH-HhhCCceEEEEecCCCHHHHHHHHHHHHHH
Confidence 56789999999999999999999999999999998542 111111 122346778999999999998888754
Q ss_pred --CccEEEEcccccChh----hhccChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEEcCccccCCCCCCCCCCCCC
Q 012176 193 --PFTHVLHLAAQAGVR----YAMQNPQSYVASNIAGFVNLLEVCKS----VNPQPSIVWASSSSVYGLNTQVPFSESHR 262 (469)
Q Consensus 193 --~~d~Vih~Aa~~~~~----~~~~~~~~~~~~Nv~~~~~ll~aa~~----~~~~~~~V~~SS~~vyg~~~~~~~~E~~~ 262 (469)
++|+||||||..... ...++.+..+++|+.++.++++++.. .+. ++||++||.....+.
T Consensus 87 ~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~-~~iv~~sS~~~~~~~---------- 155 (255)
T PRK06841 87 FGRIDILVNSAGVALLAPAEDVSEEDWDKTIDINLKGSFLMAQAVGRHMIAAGG-GKIVNLASQAGVVAL---------- 155 (255)
T ss_pred hCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhcHHHHHHHHHHHHHHHhcCC-ceEEEEcchhhccCC----------
Confidence 679999999974321 12334456899999999999998764 243 489999996543221
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceEec
Q 012176 263 TDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDF 339 (469)
Q Consensus 263 ~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 339 (469)
.....|+.+|.+.+.+++.++.++ |++++.|+||.|..+...... ..........+.+ ...+
T Consensus 156 --~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~pg~v~t~~~~~~~-~~~~~~~~~~~~~------------~~~~ 220 (255)
T PRK06841 156 --ERHVAYCASKAGVVGMTKVLALEWGPYGITVNAISPTVVLTELGKKAW-AGEKGERAKKLIP------------AGRF 220 (255)
T ss_pred --CCCchHHHHHHHHHHHHHHHHHHHHhhCeEEEEEEeCcCcCccccccc-chhHHHHHHhcCC------------CCCC
Confidence 234579999999999999998764 899999999999887433110 0111111222211 2347
Q ss_pred ccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCCc
Q 012176 340 TYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTSP 375 (469)
Q Consensus 340 v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~~ 375 (469)
.+++|++++++.++..+.. ...|+++.+.++..
T Consensus 221 ~~~~~va~~~~~l~~~~~~---~~~G~~i~~dgg~~ 253 (255)
T PRK06841 221 AYPEEIAAAALFLASDAAA---MITGENLVIDGGYT 253 (255)
T ss_pred cCHHHHHHHHHHHcCcccc---CccCCEEEECCCcc
Confidence 7899999999999876532 23558888877653
|
|
| >PRK08213 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.4e-19 Score=174.36 Aligned_cols=228 Identities=15% Similarity=0.107 Sum_probs=161.7
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhh-ccCCeEEEEecCCCHHHHHHhhccC--
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLL-QKHQVFIVEGDLNDAPLLTKLFDVV-- 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~v~~v~~Dl~d~~~l~~~~~~~-- 192 (469)
.++++||||||+|+||.++++.|+++|++|++++|+.+. ......... ...++.++.+|++|+++++++++..
T Consensus 10 ~~~k~ilItGa~g~IG~~la~~l~~~G~~V~~~~r~~~~----~~~~~~~i~~~~~~~~~~~~Dl~d~~~i~~~~~~~~~ 85 (259)
T PRK08213 10 LSGKTALVTGGSRGLGLQIAEALGEAGARVVLSARKAEE----LEEAAAHLEALGIDALWIAADVADEADIERLAEETLE 85 (259)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHH----HHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHH
Confidence 467899999999999999999999999999999985431 111111111 1236788999999999997777642
Q ss_pred ---CccEEEEcccccCh----hhhccChHHHHHHHHHHHHHHHHHHHhc-----CCCCeEEEEcCccccCCCCCCCCCCC
Q 012176 193 ---PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCKSV-----NPQPSIVWASSSSVYGLNTQVPFSES 260 (469)
Q Consensus 193 ---~~d~Vih~Aa~~~~----~~~~~~~~~~~~~Nv~~~~~ll~aa~~~-----~~~~~~V~~SS~~vyg~~~~~~~~E~ 260 (469)
++|+||||||.... ....+..+..+++|+.++.++++++... +. ++||++||...+.....
T Consensus 86 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~l~~~~~-~~~v~~sS~~~~~~~~~------ 158 (259)
T PRK08213 86 RFGHVDILVNNAGATWGAPAEDHPVEAWDKVMNLNVRGLFLLSQAVAKRSMIPRGY-GRIINVASVAGLGGNPP------ 158 (259)
T ss_pred HhCCCCEEEECCCCCCCCChhhCCHHHHHHHHhHHhHHHHHHHHHHHHHHHHhcCC-eEEEEECChhhccCCCc------
Confidence 57999999986422 1223344578899999999999987654 43 38999999765543211
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceE
Q 012176 261 HRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVAR 337 (469)
Q Consensus 261 ~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 337 (469)
...+...|+.+|++.|.+++.+++++ |+++++++||.+-.+.... .++.+.+.+..+.++..
T Consensus 159 --~~~~~~~Y~~sKa~~~~~~~~~a~~~~~~gi~v~~v~Pg~~~t~~~~~--~~~~~~~~~~~~~~~~~----------- 223 (259)
T PRK08213 159 --EVMDTIAYNTSKGAVINFTRALAAEWGPHGIRVNAIAPGFFPTKMTRG--TLERLGEDLLAHTPLGR----------- 223 (259)
T ss_pred --cccCcchHHHHHHHHHHHHHHHHHHhcccCEEEEEEecCcCCCcchhh--hhHHHHHHHHhcCCCCC-----------
Confidence 01244789999999999999998764 7999999999987764322 23344444444444322
Q ss_pred ecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCC
Q 012176 338 DFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNT 373 (469)
Q Consensus 338 ~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~ 373 (469)
+...+|++.++..++..... ...|.++++.++
T Consensus 224 -~~~~~~va~~~~~l~~~~~~---~~~G~~~~~~~~ 255 (259)
T PRK08213 224 -LGDDEDLKGAALLLASDASK---HITGQILAVDGG 255 (259)
T ss_pred -CcCHHHHHHHHHHHhCcccc---CccCCEEEECCC
Confidence 23479999988888765432 345688887765
|
|
| >PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.4e-19 Score=170.98 Aligned_cols=225 Identities=14% Similarity=0.107 Sum_probs=158.7
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHh-hccCCeEEEEecCCCHHHHHHhhccC--
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKL-LQKHQVFIVEGDLNDAPLLTKLFDVV-- 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~v~~v~~Dl~d~~~l~~~~~~~-- 192 (469)
.++++|+||||+|+||.++++.|+++|++|+++.|...... ....... .....+.++.+|+.|.+.+.++++..
T Consensus 3 ~~~~~vlItG~sg~iG~~l~~~l~~~G~~v~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 79 (248)
T PRK05557 3 LEGKVALVTGASRGIGRAIAERLAAQGANVVINYASSEAGA---EALVAEIGALGGKALAVQGDVSDAESVERAVDEAKA 79 (248)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCchhHH---HHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHH
Confidence 46689999999999999999999999999988888543211 1111111 12347889999999999998887753
Q ss_pred ---CccEEEEcccccChh----hhccChHHHHHHHHHHHHHHHHHHHhc----CCCCeEEEEcCc-cccCCCCCCCCCCC
Q 012176 193 ---PFTHVLHLAAQAGVR----YAMQNPQSYVASNIAGFVNLLEVCKSV----NPQPSIVWASSS-SVYGLNTQVPFSES 260 (469)
Q Consensus 193 ---~~d~Vih~Aa~~~~~----~~~~~~~~~~~~Nv~~~~~ll~aa~~~----~~~~~~V~~SS~-~vyg~~~~~~~~E~ 260 (469)
++|+|||+||..... ...+..+..++.|+.++.++++++... +. ++||++||. ++++.
T Consensus 80 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~-~~~v~iss~~~~~~~--------- 149 (248)
T PRK05557 80 EFGGVDILVNNAGITRDNLLMRMKEEDWDRVIDTNLTGVFNLTKAVARPMMKQRS-GRIINISSVVGLMGN--------- 149 (248)
T ss_pred HcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCC-eEEEEEcccccCcCC---------
Confidence 579999999974432 223345577889999999999987653 33 389999995 34432
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceE
Q 012176 261 HRTDQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVAR 337 (469)
Q Consensus 261 ~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 337 (469)
.....|+.+|.+.|.+++.++.+ .++++++++||.+.++.... ....+........+. .
T Consensus 150 ----~~~~~y~~sk~a~~~~~~~~a~~~~~~~i~~~~v~pg~~~~~~~~~--~~~~~~~~~~~~~~~------------~ 211 (248)
T PRK05557 150 ----PGQANYAASKAGVIGFTKSLARELASRGITVNAVAPGFIETDMTDA--LPEDVKEAILAQIPL------------G 211 (248)
T ss_pred ----CCCchhHHHHHHHHHHHHHHHHHhhhhCeEEEEEecCccCCccccc--cChHHHHHHHhcCCC------------C
Confidence 23467999999999988887754 38999999999986653322 112233333322221 2
Q ss_pred ecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCC
Q 012176 338 DFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTS 374 (469)
Q Consensus 338 ~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~ 374 (469)
.+.+++|+++++..++..... ...+++|++.++.
T Consensus 212 ~~~~~~~va~~~~~l~~~~~~---~~~g~~~~i~~~~ 245 (248)
T PRK05557 212 RLGQPEEIASAVAFLASDEAA---YITGQTLHVNGGM 245 (248)
T ss_pred CCcCHHHHHHHHHHHcCcccC---CccccEEEecCCc
Confidence 356899999999888765321 3456899998763
|
|
| >PRK09186 flagellin modification protein A; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1e-19 Score=174.83 Aligned_cols=230 Identities=14% Similarity=0.093 Sum_probs=156.6
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHh---hccCCeEEEEecCCCHHHHHHhhccC
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKL---LQKHQVFIVEGDLNDAPLLTKLFDVV 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~---~~~~~v~~v~~Dl~d~~~l~~~~~~~ 192 (469)
.++|+|+||||+|+||+++++.|+++|++|++++|..+.. ....... .....+.++.+|++|++++.++++..
T Consensus 2 ~~~k~vlItGas~giG~~~a~~l~~~g~~v~~~~r~~~~~----~~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~ 77 (256)
T PRK09186 2 LKGKTILITGAGGLIGSALVKAILEAGGIVIAADIDKEAL----NELLESLGKEFKSKKLSLVELDITDQESLEEFLSKS 77 (256)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecChHHH----HHHHHHHHhhcCCCceeEEEecCCCHHHHHHHHHHH
Confidence 3578999999999999999999999999999999854321 1111111 12235677899999999998888763
Q ss_pred -----CccEEEEcccccCh-------hhhccChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEEcCccccCCCCCCC
Q 012176 193 -----PFTHVLHLAAQAGV-------RYAMQNPQSYVASNIAGFVNLLEVCK----SVNPQPSIVWASSSSVYGLNTQVP 256 (469)
Q Consensus 193 -----~~d~Vih~Aa~~~~-------~~~~~~~~~~~~~Nv~~~~~ll~aa~----~~~~~~~~V~~SS~~vyg~~~~~~ 256 (469)
++|+|||||+.... ....+.....+++|+.++..+++++. +.+.. +||++||...+..... +
T Consensus 78 ~~~~~~id~vi~~A~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~-~iv~~sS~~~~~~~~~-~ 155 (256)
T PRK09186 78 AEKYGKIDGAVNCAYPRNKDYGKKFFDVSLDDFNENLSLHLGSSFLFSQQFAKYFKKQGGG-NLVNISSIYGVVAPKF-E 155 (256)
T ss_pred HHHcCCccEEEECCccccccccCccccCCHHHHHHHHHHhhhhHHHHHHHHHHHHHhcCCc-eEEEEechhhhccccc-h
Confidence 37999999975321 11223345678889988877766543 44554 9999999665432211 2
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCC
Q 012176 257 FSESHRTDQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDR 333 (469)
Q Consensus 257 ~~E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 333 (469)
..++.+. .....|+.+|.+.|.+.+.++.+ +++++++++||.++++... .+........+
T Consensus 156 ~~~~~~~-~~~~~Y~~sK~a~~~l~~~la~e~~~~~i~v~~i~Pg~~~~~~~~------~~~~~~~~~~~---------- 218 (256)
T PRK09186 156 IYEGTSM-TSPVEYAAIKAGIIHLTKYLAKYFKDSNIRVNCVSPGGILDNQPE------AFLNAYKKCCN---------- 218 (256)
T ss_pred hcccccc-CCcchhHHHHHHHHHHHHHHHHHhCcCCeEEEEEecccccCCCCH------HHHHHHHhcCC----------
Confidence 2233332 22347999999999999888876 4799999999998865311 12222211111
Q ss_pred cceEecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCC
Q 012176 334 EVARDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNT 373 (469)
Q Consensus 334 ~~~~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~ 373 (469)
...+++++|+|++++.++.+... ...|+++.+.++
T Consensus 219 --~~~~~~~~dva~~~~~l~~~~~~---~~~g~~~~~~~g 253 (256)
T PRK09186 219 --GKGMLDPDDICGTLVFLLSDQSK---YITGQNIIVDDG 253 (256)
T ss_pred --ccCCCCHHHhhhhHhheeccccc---cccCceEEecCC
Confidence 12478999999999999875532 234577777765
|
|
| >PRK12939 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.2e-19 Score=170.65 Aligned_cols=226 Identities=16% Similarity=0.117 Sum_probs=161.8
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhh-ccCCeEEEEecCCCHHHHHHhhccC--
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLL-QKHQVFIVEGDLNDAPLLTKLFDVV-- 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~v~~v~~Dl~d~~~l~~~~~~~-- 192 (469)
.++|+|+||||+|+||.++++.|+++|++|++++|..+. ......... ...++.++.+|++|.++++++++.+
T Consensus 5 ~~~~~vlItGa~g~iG~~la~~l~~~G~~v~~~~r~~~~----~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 80 (250)
T PRK12939 5 LAGKRALVTGAARGLGAAFAEALAEAGATVAFNDGLAAE----ARELAAALEAAGGRAHAIAADLADPASVQRFFDAAAA 80 (250)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHcCCEEEEEeCCHHH----HHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHH
Confidence 567899999999999999999999999999999885431 111111111 1236899999999999998888653
Q ss_pred ---CccEEEEcccccChh----hhccChHHHHHHHHHHHHHHHHHHHhc----CCCCeEEEEcCccccCCCCCCCCCCCC
Q 012176 193 ---PFTHVLHLAAQAGVR----YAMQNPQSYVASNIAGFVNLLEVCKSV----NPQPSIVWASSSSVYGLNTQVPFSESH 261 (469)
Q Consensus 193 ---~~d~Vih~Aa~~~~~----~~~~~~~~~~~~Nv~~~~~ll~aa~~~----~~~~~~V~~SS~~vyg~~~~~~~~E~~ 261 (469)
++|+||||+|..... ...+..+..++.|+.++.++++++... +. ++||++||...+.+.
T Consensus 81 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~-g~iv~isS~~~~~~~--------- 150 (250)
T PRK12939 81 ALGGLDGLVNNAGITNSKSATELDIDTWDAVMNVNVRGTFLMLRAALPHLRDSGR-GRIVNLASDTALWGA--------- 150 (250)
T ss_pred HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCC-eEEEEECchhhccCC---------
Confidence 679999999974321 223344567889999999999887542 22 389999997655322
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceEe
Q 012176 262 RTDQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARD 338 (469)
Q Consensus 262 ~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 338 (469)
.....|+.+|.+.|.+++.++.+ .++++++++||.+..+....... ..+......+. ....
T Consensus 151 ---~~~~~y~~sK~~~~~~~~~l~~~~~~~~i~v~~v~pg~v~t~~~~~~~~-~~~~~~~~~~~------------~~~~ 214 (250)
T PRK12939 151 ---PKLGAYVASKGAVIGMTRSLARELGGRGITVNAIAPGLTATEATAYVPA-DERHAYYLKGR------------ALER 214 (250)
T ss_pred ---CCcchHHHHHHHHHHHHHHHHHHHhhhCEEEEEEEECCCCCccccccCC-hHHHHHHHhcC------------CCCC
Confidence 23457999999999999988765 47999999999998775432111 02222222221 2234
Q ss_pred cccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCC
Q 012176 339 FTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTS 374 (469)
Q Consensus 339 ~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~ 374 (469)
+++++|++++++.++..... ...|+++++.++.
T Consensus 215 ~~~~~dva~~~~~l~~~~~~---~~~G~~i~~~gg~ 247 (250)
T PRK12939 215 LQVPDDVAGAVLFLLSDAAR---FVTGQLLPVNGGF 247 (250)
T ss_pred CCCHHHHHHHHHHHhCcccc---CccCcEEEECCCc
Confidence 78899999999999876532 3456889888764
|
|
| >PRK07856 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.9e-19 Score=171.63 Aligned_cols=224 Identities=13% Similarity=0.068 Sum_probs=161.2
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccC---
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~--- 192 (469)
.++|+++||||+|+||++++++|+++|++|++++|+... .....++.++.+|+.|+++++++++.+
T Consensus 4 ~~~k~~lItGas~gIG~~la~~l~~~g~~v~~~~r~~~~-----------~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 72 (252)
T PRK07856 4 LTGRVVLVTGGTRGIGAGIARAFLAAGATVVVCGRRAPE-----------TVDGRPAEFHAADVRDPDQVAALVDAIVER 72 (252)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCChhh-----------hhcCCceEEEEccCCCHHHHHHHHHHHHHH
Confidence 567999999999999999999999999999999985431 112347889999999999998888764
Q ss_pred --CccEEEEcccccCh----hhhccChHHHHHHHHHHHHHHHHHHHhc----CCCCeEEEEcCccccCCCCCCCCCCCCC
Q 012176 193 --PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCKSV----NPQPSIVWASSSSVYGLNTQVPFSESHR 262 (469)
Q Consensus 193 --~~d~Vih~Aa~~~~----~~~~~~~~~~~~~Nv~~~~~ll~aa~~~----~~~~~~V~~SS~~vyg~~~~~~~~E~~~ 262 (469)
++|+||||||.... ....+..+..+++|+.++..+++++... +..++||++||...+.+.
T Consensus 73 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~ii~isS~~~~~~~---------- 142 (252)
T PRK07856 73 HGRLDVLVNNAGGSPYALAAEASPRFHEKIVELNLLAPLLVAQAANAVMQQQPGGGSIVNIGSVSGRRPS---------- 142 (252)
T ss_pred cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccCCCC----------
Confidence 67999999986432 1223445678999999999999987541 222489999997665322
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHhC--CcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceEecc
Q 012176 263 TDQPASLYAATKKAGEEIAHTYNHIYG--LALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFT 340 (469)
Q Consensus 263 ~~~p~~~Y~~sK~~~E~~~~~~~~~~g--i~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v 340 (469)
.....|+.+|.+.|.+++.++.+++ ++++.++||.|..+.......-......+....+. ..+.
T Consensus 143 --~~~~~Y~~sK~a~~~l~~~la~e~~~~i~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~------------~~~~ 208 (252)
T PRK07856 143 --PGTAAYGAAKAGLLNLTRSLAVEWAPKVRVNAVVVGLVRTEQSELHYGDAEGIAAVAATVPL------------GRLA 208 (252)
T ss_pred --CCCchhHHHHHHHHHHHHHHHHHhcCCeEEEEEEeccccChHHhhhccCHHHHHHHhhcCCC------------CCCc
Confidence 2356799999999999999988753 89999999999876322100001111222222221 2245
Q ss_pred cHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCCccc
Q 012176 341 YIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTSPVP 377 (469)
Q Consensus 341 ~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~~vt 377 (469)
.++|++++++.++..... -..|..+.+.++...+
T Consensus 209 ~p~~va~~~~~L~~~~~~---~i~G~~i~vdgg~~~~ 242 (252)
T PRK07856 209 TPADIAWACLFLASDLAS---YVSGANLEVHGGGERP 242 (252)
T ss_pred CHHHHHHHHHHHcCcccC---CccCCEEEECCCcchH
Confidence 789999999998865422 3456888888876543
|
|
| >PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.9e-19 Score=172.53 Aligned_cols=219 Identities=18% Similarity=0.142 Sum_probs=159.5
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccC---
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~--- 192 (469)
..+|++|||||+|+||++++++|+++|++|++++|.. . ......+.++++|++|.++++++++..
T Consensus 6 ~~~k~vlItGas~~iG~~la~~l~~~G~~v~~~~~~~---------~---~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 73 (252)
T PRK08220 6 FSGKTVWVTGAAQGIGYAVALAFVEAGAKVIGFDQAF---------L---TQEDYPFATFVLDVSDAAAVAQVCQRLLAE 73 (252)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEecch---------h---hhcCCceEEEEecCCCHHHHHHHHHHHHHH
Confidence 5678999999999999999999999999999999843 0 011346889999999999999988763
Q ss_pred --CccEEEEcccccChh----hhccChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEEcCccccCCCCCCCCCCCCC
Q 012176 193 --PFTHVLHLAAQAGVR----YAMQNPQSYVASNIAGFVNLLEVCKS----VNPQPSIVWASSSSVYGLNTQVPFSESHR 262 (469)
Q Consensus 193 --~~d~Vih~Aa~~~~~----~~~~~~~~~~~~Nv~~~~~ll~aa~~----~~~~~~~V~~SS~~vyg~~~~~~~~E~~~ 262 (469)
++|+||||+|..... ...++++..+++|+.++..+++++.. .+. ++||++||.....+.
T Consensus 74 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~-g~iv~~ss~~~~~~~---------- 142 (252)
T PRK08220 74 TGPLDVLVNAAGILRMGATDSLSDEDWQQTFAVNAGGAFNLFRAVMPQFRRQRS-GAIVTVGSNAAHVPR---------- 142 (252)
T ss_pred cCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCC-CEEEEECCchhccCC----------
Confidence 479999999974432 23345667899999999999998753 333 389999997554221
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeecceecCCCCCCCh--------HHHHHHHHHcCCceEEEeeCC
Q 012176 263 TDQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPDMA--------YFFFTKDILQGKTIDVYKTQD 331 (469)
Q Consensus 263 ~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~Gp~~~~~~~--------~~~~~~~~~~g~~~~~~~~~~ 331 (469)
.+...|+.+|.+.|.+++.++.+ +|+++++++||.++++....... +.........+
T Consensus 143 --~~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~i~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 210 (252)
T PRK08220 143 --IGMAAYGASKAALTSLAKCVGLELAPYGVRCNVVSPGSTDTDMQRTLWVDEDGEQQVIAGFPEQFKLG---------- 210 (252)
T ss_pred --CCCchhHHHHHHHHHHHHHHHHHhhHhCeEEEEEecCcCcchhhhhhccchhhhhhhhhhHHHHHhhc----------
Confidence 34578999999999999999876 68999999999999984321000 00001111111
Q ss_pred CCcceEecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCC
Q 012176 332 DREVARDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTS 374 (469)
Q Consensus 332 ~~~~~~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~ 374 (469)
.....+++++|+|++++.++..... ...++++.+.++.
T Consensus 211 --~~~~~~~~~~dva~~~~~l~~~~~~---~~~g~~i~~~gg~ 248 (252)
T PRK08220 211 --IPLGKIARPQEIANAVLFLASDLAS---HITLQDIVVDGGA 248 (252)
T ss_pred --CCCcccCCHHHHHHHHHHHhcchhc---CccCcEEEECCCe
Confidence 1224578999999999998865421 3445777776653
|
|
| >PRK08628 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.4e-19 Score=172.59 Aligned_cols=232 Identities=16% Similarity=0.079 Sum_probs=161.3
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhh-ccCCeEEEEecCCCHHHHHHhhccC--
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLL-QKHQVFIVEGDLNDAPLLTKLFDVV-- 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~v~~v~~Dl~d~~~l~~~~~~~-- 192 (469)
.+++++|||||+|+||++++++|+++|++|++++|..... +...... ...++.++.+|++|++++++++++.
T Consensus 5 l~~~~ilItGasggiG~~la~~l~~~G~~v~~~~r~~~~~-----~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 79 (258)
T PRK08628 5 LKDKVVIVTGGASGIGAAISLRLAEEGAIPVIFGRSAPDD-----EFAEELRALQPRAEFVQVDLTDDAQCRDAVEQTVA 79 (258)
T ss_pred cCCCEEEEeCCCChHHHHHHHHHHHcCCcEEEEcCChhhH-----HHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHH
Confidence 5678999999999999999999999999999999865422 1111111 2346889999999999998888753
Q ss_pred ---CccEEEEcccccCh---hhhccChHHHHHHHHHHHHHHHHHHHh---cCCCCeEEEEcCccccCCCCCCCCCCCCCC
Q 012176 193 ---PFTHVLHLAAQAGV---RYAMQNPQSYVASNIAGFVNLLEVCKS---VNPQPSIVWASSSSVYGLNTQVPFSESHRT 263 (469)
Q Consensus 193 ---~~d~Vih~Aa~~~~---~~~~~~~~~~~~~Nv~~~~~ll~aa~~---~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~ 263 (469)
++|+||||||.... ....++.+..++.|+.++..+++++.. .+. ++||++||...+.+.
T Consensus 80 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~~iv~~ss~~~~~~~----------- 147 (258)
T PRK08628 80 KFGRIDGLVNNAGVNDGVGLEAGREAFVASLERNLIHYYVMAHYCLPHLKASR-GAIVNISSKTALTGQ----------- 147 (258)
T ss_pred hcCCCCEEEECCcccCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHhhccC-cEEEEECCHHhccCC-----------
Confidence 57999999996322 112244567889999999999888653 222 389999997654321
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeecceecCCCCCC----ChHHHHHHHHHcCCceEEEeeCCCCcce
Q 012176 264 DQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPD----MAYFFFTKDILQGKTIDVYKTQDDREVA 336 (469)
Q Consensus 264 ~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~Gp~~~~~----~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 336 (469)
.+...|+.+|.+.|.+++.++.+ ++++++.|+||.|++|..... .........+....+ . +
T Consensus 148 -~~~~~Y~~sK~a~~~~~~~l~~e~~~~~i~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~--~------~--- 215 (258)
T PRK08628 148 -GGTSGYAAAKGAQLALTREWAVALAKDGVRVNAVIPAEVMTPLYENWIATFDDPEAKLAAITAKIP--L------G--- 215 (258)
T ss_pred -CCCchhHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCccCCHHHHHHhhhccCHHHHHHHHHhcCC--c------c---
Confidence 34568999999999999999865 489999999999999742210 000011111111111 0 1
Q ss_pred EecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCCcccHHH
Q 012176 337 RDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTSPVPVGR 380 (469)
Q Consensus 337 ~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~~vt~~e 380 (469)
..++.++|+|++++.++..... ...|+.+.+.++. ..+++
T Consensus 216 ~~~~~~~dva~~~~~l~~~~~~---~~~g~~~~~~gg~-~~~~~ 255 (258)
T PRK08628 216 HRMTTAEEIADTAVFLLSERSS---HTTGQWLFVDGGY-VHLDR 255 (258)
T ss_pred ccCCCHHHHHHHHHHHhChhhc---cccCceEEecCCc-ccccc
Confidence 1367889999999999876532 2345777776653 44433
|
|
| >PRK12937 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=4e-19 Score=169.52 Aligned_cols=227 Identities=16% Similarity=0.117 Sum_probs=159.6
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhh-ccCCeEEEEecCCCHHHHHHhhccC--
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLL-QKHQVFIVEGDLNDAPLLTKLFDVV-- 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~v~~v~~Dl~d~~~l~~~~~~~-- 192 (469)
.++++|+||||+|+||+++++.|+++|++|+++.|+.... ......... ...++.++.+|++|.++++++++.+
T Consensus 3 ~~~~~vlItG~~~~iG~~la~~l~~~g~~v~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 79 (245)
T PRK12937 3 LSNKVAIVTGASRGIGAAIARRLAADGFAVAVNYAGSAAA---ADELVAEIEAAGGRAIAVQADVADAAAVTRLFDAAET 79 (245)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCCCHHH---HHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHH
Confidence 4678999999999999999999999999998887754311 111111111 1346889999999999999888753
Q ss_pred ---CccEEEEcccccChh----hhccChHHHHHHHHHHHHHHHHHHHhcC-CCCeEEEEcCccccCCCCCCCCCCCCCCC
Q 012176 193 ---PFTHVLHLAAQAGVR----YAMQNPQSYVASNIAGFVNLLEVCKSVN-PQPSIVWASSSSVYGLNTQVPFSESHRTD 264 (469)
Q Consensus 193 ---~~d~Vih~Aa~~~~~----~~~~~~~~~~~~Nv~~~~~ll~aa~~~~-~~~~~V~~SS~~vyg~~~~~~~~E~~~~~ 264 (469)
++|+||||||..... ...++.+..+++|+.++.++++++.+.. ..++||++||...+.+.
T Consensus 80 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ss~~~~~~~------------ 147 (245)
T PRK12937 80 AFGRIDVLVNNAGVMPLGTIADFDLEDFDRTIATNLRGAFVVLREAARHLGQGGRIINLSTSVIALPL------------ 147 (245)
T ss_pred HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHhhhchHHHHHHHHHHHHhccCcEEEEEeeccccCCC------------
Confidence 579999999974321 2233456788999999999998876542 22489999987654321
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceEeccc
Q 012176 265 QPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTY 341 (469)
Q Consensus 265 ~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~ 341 (469)
.+.+.|+.+|.+.+.+++.++.++ ++++++++||.+-.+..... ..+.....+....++. .+.+
T Consensus 148 ~~~~~Y~~sK~a~~~~~~~~a~~~~~~~i~v~~i~pg~~~t~~~~~~-~~~~~~~~~~~~~~~~------------~~~~ 214 (245)
T PRK12937 148 PGYGPYAASKAAVEGLVHVLANELRGRGITVNAVAPGPVATELFFNG-KSAEQIDQLAGLAPLE------------RLGT 214 (245)
T ss_pred CCCchhHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeCCccCchhccc-CCHHHHHHHHhcCCCC------------CCCC
Confidence 345789999999999999988664 79999999999877642111 1122333333333221 2446
Q ss_pred HHHHHHHHHHHhccCCCCCCCCCceEEEeCCC
Q 012176 342 IDDVVKGCVGATGSGGKKRGPAQLRVYNLGNT 373 (469)
Q Consensus 342 v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~ 373 (469)
++|++++++.++..+.. ...|+++++.++
T Consensus 215 ~~d~a~~~~~l~~~~~~---~~~g~~~~~~~g 243 (245)
T PRK12937 215 PEEIAAAVAFLAGPDGA---WVNGQVLRVNGG 243 (245)
T ss_pred HHHHHHHHHHHcCcccc---CccccEEEeCCC
Confidence 79999999888865432 234588888764
|
|
| >PRK09242 tropinone reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=5e-19 Score=170.38 Aligned_cols=227 Identities=15% Similarity=0.136 Sum_probs=162.2
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhh---ccCCeEEEEecCCCHHHHHHhhccC
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLL---QKHQVFIVEGDLNDAPLLTKLFDVV 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~---~~~~v~~v~~Dl~d~~~l~~~~~~~ 192 (469)
.++|+++||||+|+||.++++.|+++|++|++++|+.+ .......... ...++.++.+|++|+++++++++.+
T Consensus 7 ~~~k~~lItGa~~gIG~~~a~~l~~~G~~v~~~~r~~~----~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~ 82 (257)
T PRK09242 7 LDGQTALITGASKGIGLAIAREFLGLGADVLIVARDAD----ALAQARDELAEEFPEREVHGLAADVSDDEDRRAILDWV 82 (257)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHH----HHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHH
Confidence 56789999999999999999999999999999998543 2222222111 1346889999999999988877653
Q ss_pred -----CccEEEEcccccCh----hhhccChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEEcCccccCCCCCCCCCC
Q 012176 193 -----PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCKS----VNPQPSIVWASSSSVYGLNTQVPFSE 259 (469)
Q Consensus 193 -----~~d~Vih~Aa~~~~----~~~~~~~~~~~~~Nv~~~~~ll~aa~~----~~~~~~~V~~SS~~vyg~~~~~~~~E 259 (469)
++|+|||+||.... ....++.+..+++|+.++..+++++.. .+. ++||++||...+.+.
T Consensus 83 ~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~-~~ii~~sS~~~~~~~------- 154 (257)
T PRK09242 83 EDHWDGLHILVNNAGGNIRKAAIDYTEDEWRGIFETNLFSAFELSRYAHPLLKQHAS-SAIVNIGSVSGLTHV------- 154 (257)
T ss_pred HHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCC-ceEEEECccccCCCC-------
Confidence 57999999996321 233456677899999999999988743 343 389999998766432
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcce
Q 012176 260 SHRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVA 336 (469)
Q Consensus 260 ~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 336 (469)
.+...|+.+|.+.+.+++.++.++ |++++.++||.+.++..........+........++.
T Consensus 155 -----~~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~i~Pg~i~t~~~~~~~~~~~~~~~~~~~~~~~----------- 218 (257)
T PRK09242 155 -----RSGAPYGMTKAALLQMTRNLAVEWAEDGIRVNAVAPWYIRTPLTSGPLSDPDYYEQVIERTPMR----------- 218 (257)
T ss_pred -----CCCcchHHHHHHHHHHHHHHHHHHHHhCeEEEEEEECCCCCcccccccCChHHHHHHHhcCCCC-----------
Confidence 345679999999999999988654 8999999999998875432211123333333333321
Q ss_pred EecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCC
Q 012176 337 RDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTS 374 (469)
Q Consensus 337 ~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~ 374 (469)
-+...+|++.++..++..... ...|+++.+.++.
T Consensus 219 -~~~~~~~va~~~~~l~~~~~~---~~~g~~i~~~gg~ 252 (257)
T PRK09242 219 -RVGEPEEVAAAVAFLCMPAAS---YITGQCIAVDGGF 252 (257)
T ss_pred -CCcCHHHHHHHHHHHhCcccc---cccCCEEEECCCe
Confidence 134579999999888864321 2345788776653
|
|
| >PRK07478 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=5.3e-19 Score=169.89 Aligned_cols=228 Identities=13% Similarity=0.092 Sum_probs=157.3
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhc-cCCeEEEEecCCCHHHHHHhhccC--
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQ-KHQVFIVEGDLNDAPLLTKLFDVV-- 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~v~~v~~Dl~d~~~l~~~~~~~-- 192 (469)
..+++++||||+|+||.+++++|+++|++|++++|+... .......... ..++.++.+|++|+++++++++..
T Consensus 4 ~~~k~~lItGas~giG~~ia~~l~~~G~~v~~~~r~~~~----~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 79 (254)
T PRK07478 4 LNGKVAIITGASSGIGRAAAKLFAREGAKVVVGARRQAE----LDQLVAEIRAEGGEAVALAGDVRDEAYAKALVALAVE 79 (254)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHH----HHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHH
Confidence 567899999999999999999999999999999986432 1221111111 236888999999999988888753
Q ss_pred ---CccEEEEcccccCh-----hhhccChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEEcCccccCCCCCCCCCCC
Q 012176 193 ---PFTHVLHLAAQAGV-----RYAMQNPQSYVASNIAGFVNLLEVC----KSVNPQPSIVWASSSSVYGLNTQVPFSES 260 (469)
Q Consensus 193 ---~~d~Vih~Aa~~~~-----~~~~~~~~~~~~~Nv~~~~~ll~aa----~~~~~~~~~V~~SS~~vyg~~~~~~~~E~ 260 (469)
++|+||||||.... ....++.+..+++|+.++..+++++ ++.+.. +||++||...+...
T Consensus 80 ~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~l~~~~~~-~iv~~sS~~~~~~~-------- 150 (254)
T PRK07478 80 RFGGLDIAFNNAGTLGEMGPVAEMSLEGWRETLATNLTSAFLGAKHQIPAMLARGGG-SLIFTSTFVGHTAG-------- 150 (254)
T ss_pred hcCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCc-eEEEEechHhhccC--------
Confidence 67999999997432 1223445678999999888776654 344443 89999997655311
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceE
Q 012176 261 HRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVAR 337 (469)
Q Consensus 261 ~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 337 (469)
..+...|+.+|.+.+.+++.++.++ |+++++|+||.|-.+..............+....+ ..
T Consensus 151 ---~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~------------~~ 215 (254)
T PRK07478 151 ---FPGMAAYAASKAGLIGLTQVLAAEYGAQGIRVNALLPGGTDTPMGRAMGDTPEALAFVAGLHA------------LK 215 (254)
T ss_pred ---CCCcchhHHHHHHHHHHHHHHHHHHhhcCEEEEEEeeCcccCcccccccCCHHHHHHHHhcCC------------CC
Confidence 1345689999999999999998765 69999999999977632211000111111111111 12
Q ss_pred ecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCC
Q 012176 338 DFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTS 374 (469)
Q Consensus 338 ~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~ 374 (469)
.+..++|++++++.++..... ...|+++.+.++.
T Consensus 216 ~~~~~~~va~~~~~l~s~~~~---~~~G~~~~~dgg~ 249 (254)
T PRK07478 216 RMAQPEEIAQAALFLASDAAS---FVTGTALLVDGGV 249 (254)
T ss_pred CCcCHHHHHHHHHHHcCchhc---CCCCCeEEeCCch
Confidence 245789999999998865432 2345777776653
|
|
| >PRK06181 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.3e-19 Score=172.16 Aligned_cols=209 Identities=18% Similarity=0.118 Sum_probs=150.9
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhh-ccCCeEEEEecCCCHHHHHHhhccC----
Q 012176 118 GMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLL-QKHQVFIVEGDLNDAPLLTKLFDVV---- 192 (469)
Q Consensus 118 ~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~v~~v~~Dl~d~~~l~~~~~~~---- 192 (469)
+++||||||+|+||.++++.|+++|++|++++|+... ......... ...++.++.+|+.|.+.+.++++.+
T Consensus 1 ~~~vlVtGasg~iG~~la~~l~~~g~~Vi~~~r~~~~----~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 76 (263)
T PRK06181 1 GKVVIITGASEGIGRALAVRLARAGAQLVLAARNETR----LASLAQELADHGGEALVVPTDVSDAEACERLIEAAVARF 76 (263)
T ss_pred CCEEEEecCCcHHHHHHHHHHHHCCCEEEEEeCCHHH----HHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 3689999999999999999999999999999985431 111111111 1336889999999999998888754
Q ss_pred -CccEEEEcccccChhh-----hccChHHHHHHHHHHHHHHHHHHHh---cCCCCeEEEEcCccccCCCCCCCCCCCCCC
Q 012176 193 -PFTHVLHLAAQAGVRY-----AMQNPQSYVASNIAGFVNLLEVCKS---VNPQPSIVWASSSSVYGLNTQVPFSESHRT 263 (469)
Q Consensus 193 -~~d~Vih~Aa~~~~~~-----~~~~~~~~~~~Nv~~~~~ll~aa~~---~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~ 263 (469)
++|+||||||...... ..+.....+++|+.++.++++.+.. .+. +++|++||...+.+.
T Consensus 77 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~-~~iv~~sS~~~~~~~----------- 144 (263)
T PRK06181 77 GGIDILVNNAGITMWSRFDELTDLSVFERVMRVNYLGAVYCTHAALPHLKASR-GQIVVVSSLAGLTGV----------- 144 (263)
T ss_pred CCCCEEEECCCcccccchhccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC-CEEEEEecccccCCC-----------
Confidence 5799999998744321 1223456799999999999998753 222 389999998776432
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceEecc
Q 012176 264 DQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFT 340 (469)
Q Consensus 264 ~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v 340 (469)
.+...|+.+|...|.+++.++.+ .++++++++||.+..+.... ... ..+.+.... +.+..+++
T Consensus 145 -~~~~~Y~~sK~~~~~~~~~l~~~~~~~~i~~~~i~pg~v~t~~~~~------~~~--~~~~~~~~~-----~~~~~~~~ 210 (263)
T PRK06181 145 -PTRSGYAASKHALHGFFDSLRIELADDGVAVTVVCPGFVATDIRKR------ALD--GDGKPLGKS-----PMQESKIM 210 (263)
T ss_pred -CCccHHHHHHHHHHHHHHHHHHHhhhcCceEEEEecCccccCcchh------hcc--ccccccccc-----cccccCCC
Confidence 34578999999999999888754 48999999999998763321 000 012221111 22334789
Q ss_pred cHHHHHHHHHHHhccC
Q 012176 341 YIDDVVKGCVGATGSG 356 (469)
Q Consensus 341 ~v~Dva~~~~~~~~~~ 356 (469)
+++|+|++++.+++..
T Consensus 211 ~~~dva~~i~~~~~~~ 226 (263)
T PRK06181 211 SAEECAEAILPAIARR 226 (263)
T ss_pred CHHHHHHHHHHHhhCC
Confidence 9999999999999754
|
|
| >PRK12824 acetoacetyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1e-18 Score=166.63 Aligned_cols=225 Identities=14% Similarity=0.076 Sum_probs=159.9
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHh-hccCCeEEEEecCCCHHHHHHhhccC-----
Q 012176 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKL-LQKHQVFIVEGDLNDAPLLTKLFDVV----- 192 (469)
Q Consensus 119 ~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~v~~v~~Dl~d~~~l~~~~~~~----- 192 (469)
++|+||||+|+||+++++.|+++|++|++++|+.. +......... ....++.++.+|++|.+.+.++++..
T Consensus 3 k~vlItG~s~~iG~~la~~l~~~g~~vi~~~r~~~---~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~ 79 (245)
T PRK12824 3 KIALVTGAKRGIGSAIARELLNDGYRVIATYFSGN---DCAKDWFEEYGFTEDQVRLKELDVTDTEECAEALAEIEEEEG 79 (245)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCcH---HHHHHHHHHhhccCCeEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 58999999999999999999999999999998643 1111111111 12336889999999999988888653
Q ss_pred CccEEEEcccccCh----hhhccChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEEcCccccCCCCCCCCCCCCCCC
Q 012176 193 PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVC----KSVNPQPSIVWASSSSVYGLNTQVPFSESHRTD 264 (469)
Q Consensus 193 ~~d~Vih~Aa~~~~----~~~~~~~~~~~~~Nv~~~~~ll~aa----~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~ 264 (469)
++|+|||++|.... ....++.+.+++.|+.++.++++++ ++.+.. +||++||...+.+.
T Consensus 80 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~-~iv~iss~~~~~~~------------ 146 (245)
T PRK12824 80 PVDILVNNAGITRDSVFKRMSHQEWNDVINTNLNSVFNVTQPLFAAMCEQGYG-RIINISSVNGLKGQ------------ 146 (245)
T ss_pred CCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCe-EEEEECChhhccCC------------
Confidence 57999999997432 2234455678899999998886544 445544 99999997766432
Q ss_pred CCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceEeccc
Q 012176 265 QPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTY 341 (469)
Q Consensus 265 ~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~ 341 (469)
.....|+.+|.+.+.+++.++.+ .|+++++++||.+.++...... ......+....++ ..+..
T Consensus 147 ~~~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~pg~~~t~~~~~~~--~~~~~~~~~~~~~------------~~~~~ 212 (245)
T PRK12824 147 FGQTNYSAAKAGMIGFTKALASEGARYGITVNCIAPGYIATPMVEQMG--PEVLQSIVNQIPM------------KRLGT 212 (245)
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHhCeEEEEEEEcccCCcchhhcC--HHHHHHHHhcCCC------------CCCCC
Confidence 23457999999999999988754 4899999999999887443211 1222233332222 22456
Q ss_pred HHHHHHHHHHHhccCCCCCCCCCceEEEeCCCCcc
Q 012176 342 IDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTSPV 376 (469)
Q Consensus 342 v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~~v 376 (469)
++|+++++..++..... ...|+++++.++..+
T Consensus 213 ~~~va~~~~~l~~~~~~---~~~G~~~~~~~g~~~ 244 (245)
T PRK12824 213 PEEIAAAVAFLVSEAAG---FITGETISINGGLYM 244 (245)
T ss_pred HHHHHHHHHHHcCcccc---CccCcEEEECCCeec
Confidence 89999999888754321 345699999988643
|
|
| >PRK06523 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=6.6e-19 Score=169.77 Aligned_cols=223 Identities=15% Similarity=0.044 Sum_probs=158.3
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccC---
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~--- 192 (469)
.++|+|+||||+|+||++++++|+++|++|++++|.... ....++.++.+|+.|.+.++++++..
T Consensus 7 ~~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~r~~~~------------~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 74 (260)
T PRK06523 7 LAGKRALVTGGTKGIGAATVARLLEAGARVVTTARSRPD------------DLPEGVEFVAADLTTAEGCAAVARAVLER 74 (260)
T ss_pred CCCCEEEEECCCCchhHHHHHHHHHCCCEEEEEeCChhh------------hcCCceeEEecCCCCHHHHHHHHHHHHHH
Confidence 567899999999999999999999999999999985431 01236889999999999888776543
Q ss_pred --CccEEEEcccccCh------hhhccChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEEcCccccCCCCCCCCCCC
Q 012176 193 --PFTHVLHLAAQAGV------RYAMQNPQSYVASNIAGFVNLLEVCK----SVNPQPSIVWASSSSVYGLNTQVPFSES 260 (469)
Q Consensus 193 --~~d~Vih~Aa~~~~------~~~~~~~~~~~~~Nv~~~~~ll~aa~----~~~~~~~~V~~SS~~vyg~~~~~~~~E~ 260 (469)
++|+||||||.... ....++++..+++|+.++..+++++. +.+. ++||++||...+.+..
T Consensus 75 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~-g~ii~isS~~~~~~~~------- 146 (260)
T PRK06523 75 LGGVDILVHVLGGSSAPAGGFAALTDEEWQDELNLNLLAAVRLDRALLPGMIARGS-GVIIHVTSIQRRLPLP------- 146 (260)
T ss_pred cCCCCEEEECCcccccCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCC-cEEEEEecccccCCCC-------
Confidence 57999999995321 12344567789999999988876643 3444 3899999976653210
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCCCC---------ChHHHHHHHH---HcCCceE
Q 012176 261 HRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPD---------MAYFFFTKDI---LQGKTID 325 (469)
Q Consensus 261 ~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~~~---------~~~~~~~~~~---~~g~~~~ 325 (469)
.+...|+.+|.+.+.+++.++.++ |+++++|+||.|.++..... .........+ ..+.+
T Consensus 147 ----~~~~~Y~~sK~a~~~l~~~~a~~~~~~gi~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-- 220 (260)
T PRK06523 147 ----ESTTAYAAAKAALSTYSKSLSKEVAPKGVRVNTVSPGWIETEAAVALAERLAEAAGTDYEGAKQIIMDSLGGIP-- 220 (260)
T ss_pred ----CCcchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCcccCccHHHHHHHHHhhcCCCHHHHHHHHHHHhccCc--
Confidence 245679999999999999998664 79999999999998743210 0001111111 11111
Q ss_pred EEeeCCCCcceEecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCCccc
Q 012176 326 VYKTQDDREVARDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTSPVP 377 (469)
Q Consensus 326 ~~~~~~~~~~~~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~~vt 377 (469)
...+..++|++++++.++..... ...|+++.+.++...|
T Consensus 221 ----------~~~~~~~~~va~~~~~l~s~~~~---~~~G~~~~vdgg~~~~ 259 (260)
T PRK06523 221 ----------LGRPAEPEEVAELIAFLASDRAA---SITGTEYVIDGGTVPT 259 (260)
T ss_pred ----------cCCCCCHHHHHHHHHHHhCcccc---cccCceEEecCCccCC
Confidence 12245689999999998865422 3445889888876544
|
|
| >PRK06196 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=2e-18 Score=171.44 Aligned_cols=222 Identities=17% Similarity=0.093 Sum_probs=147.9
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccC---
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~--- 192 (469)
.++++|+||||+|+||.+++++|+++|++|++++|+.+ ........ + .++.++.+|++|.++++++++..
T Consensus 24 l~~k~vlITGasggIG~~~a~~L~~~G~~Vv~~~R~~~----~~~~~~~~-l--~~v~~~~~Dl~d~~~v~~~~~~~~~~ 96 (315)
T PRK06196 24 LSGKTAIVTGGYSGLGLETTRALAQAGAHVIVPARRPD----VAREALAG-I--DGVEVVMLDLADLESVRAFAERFLDS 96 (315)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHH----HHHHHHHH-h--hhCeEEEccCCCHHHHHHHHHHHHhc
Confidence 46789999999999999999999999999999999542 11111111 1 24889999999999998887642
Q ss_pred --CccEEEEcccccChh--hhccChHHHHHHHHHHHHHHHHH----HHhcCCCCeEEEEcCccccCCCCCCCCCCCC--C
Q 012176 193 --PFTHVLHLAAQAGVR--YAMQNPQSYVASNIAGFVNLLEV----CKSVNPQPSIVWASSSSVYGLNTQVPFSESH--R 262 (469)
Q Consensus 193 --~~d~Vih~Aa~~~~~--~~~~~~~~~~~~Nv~~~~~ll~a----a~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~--~ 262 (469)
++|+||||||..... ...+..+..+++|+.++..++++ +++.+. .+||++||.+..... ..+++.+ .
T Consensus 97 ~~~iD~li~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~ll~~l~~~~~-~~iV~vSS~~~~~~~--~~~~~~~~~~ 173 (315)
T PRK06196 97 GRRIDILINNAGVMACPETRVGDGWEAQFATNHLGHFALVNLLWPALAAGAG-ARVVALSSAGHRRSP--IRWDDPHFTR 173 (315)
T ss_pred CCCCCEEEECCCCCCCCCccCCccHHHHHHHhhHHHHHHHHHHHHHHHhcCC-CeEEEECCHHhccCC--CCccccCccC
Confidence 579999999974322 23345677899999997776665 444443 389999997543211 1111111 1
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceEec
Q 012176 263 TDQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDF 339 (469)
Q Consensus 263 ~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 339 (469)
...+...|+.+|.+.+.+.+.++.+ .|+++++|+||.|.++.....................++. ..+
T Consensus 174 ~~~~~~~Y~~SK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~ 244 (315)
T PRK06196 174 GYDKWLAYGQSKTANALFAVHLDKLGKDQGVRAFSVHPGGILTPLQRHLPREEQVALGWVDEHGNPID---------PGF 244 (315)
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeeCCcccCCccccCChhhhhhhhhhhhhhhhhh---------hhc
Confidence 1134567999999999999888765 4899999999999998543211100000000000000000 024
Q ss_pred ccHHHHHHHHHHHhccC
Q 012176 340 TYIDDVVKGCVGATGSG 356 (469)
Q Consensus 340 v~v~Dva~~~~~~~~~~ 356 (469)
..++|+|..++.++..+
T Consensus 245 ~~~~~~a~~~~~l~~~~ 261 (315)
T PRK06196 245 KTPAQGAATQVWAATSP 261 (315)
T ss_pred CCHhHHHHHHHHHhcCC
Confidence 56899999999888654
|
|
| >PRK12744 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=5.7e-19 Score=170.05 Aligned_cols=235 Identities=15% Similarity=0.084 Sum_probs=157.4
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhc-cCCeEEEEecCCCHHHHHHhhccC--
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQ-KHQVFIVEGDLNDAPLLTKLFDVV-- 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~v~~v~~Dl~d~~~l~~~~~~~-- 192 (469)
.++|+|+||||+|+||.++++.|+++|++|+++++.................. ...+.++.+|++|+++++++++.+
T Consensus 6 l~~k~vlItGa~~gIG~~~a~~l~~~G~~vv~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 85 (257)
T PRK12744 6 LKGKVVLIAGGAKNLGGLIARDLAAQGAKAVAIHYNSAASKADAEETVAAVKAAGAKAVAFQADLTTAAAVEKLFDDAKA 85 (257)
T ss_pred CCCcEEEEECCCchHHHHHHHHHHHCCCcEEEEecCCccchHHHHHHHHHHHHhCCcEEEEecCcCCHHHHHHHHHHHHH
Confidence 45689999999999999999999999999888776543222222222222111 236888999999999999888753
Q ss_pred ---CccEEEEcccccCh----hhhccChHHHHHHHHHHHHHHHHHHHhcC-CCCeEEEEcCccccCCCCCCCCCCCCCCC
Q 012176 193 ---PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCKSVN-PQPSIVWASSSSVYGLNTQVPFSESHRTD 264 (469)
Q Consensus 193 ---~~d~Vih~Aa~~~~----~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~-~~~~~V~~SS~~vyg~~~~~~~~E~~~~~ 264 (469)
++|+||||||.... ....++.+..+++|+.++..+++++...- ..+++++++|..+....
T Consensus 86 ~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~iv~~~ss~~~~~~------------ 153 (257)
T PRK12744 86 AFGRPDIAINTVGKVLKKPIVEISEAEYDEMFAVNSKSAFFFIKEAGRHLNDNGKIVTLVTSLLGAFT------------ 153 (257)
T ss_pred hhCCCCEEEECCcccCCCCcccCCHHHHHHHHhhhhhHHHHHHHHHHHhhccCCCEEEEecchhcccC------------
Confidence 67999999997332 22344566789999999999999876531 12367766333222111
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceEeccc
Q 012176 265 QPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTY 341 (469)
Q Consensus 265 ~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~ 341 (469)
.....|+.+|.+.|.+++.++.++ |+++++++||.+.++...+... ..... ...... . ........+.+
T Consensus 154 ~~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~v~pg~v~t~~~~~~~~-~~~~~---~~~~~~-~---~~~~~~~~~~~ 225 (257)
T PRK12744 154 PFYSAYAGSKAPVEHFTRAASKEFGARGISVTAVGPGPMDTPFFYPQEG-AEAVA---YHKTAA-A---LSPFSKTGLTD 225 (257)
T ss_pred CCcccchhhHHHHHHHHHHHHHHhCcCceEEEEEecCccccchhccccc-cchhh---cccccc-c---ccccccCCCCC
Confidence 234679999999999999999875 6999999999998764322110 00000 000000 0 00111224789
Q ss_pred HHHHHHHHHHHhccCCCCCCCCCceEEEeCCCC
Q 012176 342 IDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTS 374 (469)
Q Consensus 342 v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~ 374 (469)
++|++.++..++.... ...|+++++.++.
T Consensus 226 ~~dva~~~~~l~~~~~----~~~g~~~~~~gg~ 254 (257)
T PRK12744 226 IEDIVPFIRFLVTDGW----WITGQTILINGGY 254 (257)
T ss_pred HHHHHHHHHHhhcccc----eeecceEeecCCc
Confidence 9999999999987421 2345899888764
|
|
| >COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=5.9e-19 Score=162.44 Aligned_cols=209 Identities=14% Similarity=0.068 Sum_probs=152.4
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccC---
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~--- 192 (469)
.++|.|+||||++.||.+++++|.+.|++|++..|+.+ .++....+.-+ ..+..+..|++|.++++++++..
T Consensus 4 ~~~kv~lITGASSGiG~A~A~~l~~~G~~vvl~aRR~d----rL~~la~~~~~-~~~~~~~~DVtD~~~~~~~i~~~~~~ 78 (246)
T COG4221 4 LKGKVALITGASSGIGEATARALAEAGAKVVLAARREE----RLEALADEIGA-GAALALALDVTDRAAVEAAIEALPEE 78 (246)
T ss_pred CCCcEEEEecCcchHHHHHHHHHHHCCCeEEEEeccHH----HHHHHHHhhcc-CceEEEeeccCCHHHHHHHHHHHHHh
Confidence 46689999999999999999999999999999999654 23333333222 46899999999999977666532
Q ss_pred --CccEEEEcccccCh----hhhccChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEEcCccccCCCCCCCCCCCCC
Q 012176 193 --PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCK----SVNPQPSIVWASSSSVYGLNTQVPFSESHR 262 (469)
Q Consensus 193 --~~d~Vih~Aa~~~~----~~~~~~~~~~~~~Nv~~~~~ll~aa~----~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~ 262 (469)
++|++|||||..-. ....++++.++++|+.|+.+..++.. +.+.. +||++||.+..-.
T Consensus 79 ~g~iDiLvNNAGl~~g~~~~~~~~~dw~~Mid~Ni~G~l~~~~avLP~m~~r~~G-~IiN~~SiAG~~~----------- 146 (246)
T COG4221 79 FGRIDILVNNAGLALGDPLDEADLDDWDRMIDTNVKGLLNGTRAVLPGMVERKSG-HIINLGSIAGRYP----------- 146 (246)
T ss_pred hCcccEEEecCCCCcCChhhhCCHHHHHHHHHHHHHHHHHHHHHhhhHHHhcCCc-eEEEecccccccc-----------
Confidence 58999999997432 23356677899999999999998853 44444 9999999663211
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCC--CCChHHHHHHHHHcCCceEEEeeCCCCcceE
Q 012176 263 TDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGR--PDMAYFFFTKDILQGKTIDVYKTQDDREVAR 337 (469)
Q Consensus 263 ~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~--~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 337 (469)
....+.|+++|++...+...++.+. +++++.|.||.|-..... ++..-..-..... ...
T Consensus 147 -y~~~~vY~ATK~aV~~fs~~LR~e~~g~~IRVt~I~PG~v~~~~~s~v~~~g~~~~~~~~y---------------~~~ 210 (246)
T COG4221 147 -YPGGAVYGATKAAVRAFSLGLRQELAGTGIRVTVISPGLVETTEFSTVRFEGDDERADKVY---------------KGG 210 (246)
T ss_pred -CCCCccchhhHHHHHHHHHHHHHHhcCCCeeEEEecCceecceecccccCCchhhhHHHHh---------------ccC
Confidence 1345779999999999999888764 799999999998553111 0000011111111 123
Q ss_pred ecccHHHHHHHHHHHhccCC
Q 012176 338 DFTYIDDVVKGCVGATGSGG 357 (469)
Q Consensus 338 ~~v~v~Dva~~~~~~~~~~~ 357 (469)
.++..+|+|+++..+++.|.
T Consensus 211 ~~l~p~dIA~~V~~~~~~P~ 230 (246)
T COG4221 211 TALTPEDIAEAVLFAATQPQ 230 (246)
T ss_pred CCCCHHHHHHHHHHHHhCCC
Confidence 46778999999999999984
|
|
| >PRK08085 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=6.6e-19 Score=169.27 Aligned_cols=227 Identities=13% Similarity=0.060 Sum_probs=159.1
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhc-cCCeEEEEecCCCHHHHHHhhccC--
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQ-KHQVFIVEGDLNDAPLLTKLFDVV-- 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~v~~v~~Dl~d~~~l~~~~~~~-- 192 (469)
..++++|||||+|+||.+++++|+++|++|++++|+.. ........... ..++..+.+|++|.++++++++..
T Consensus 7 l~~k~~lItGas~giG~~ia~~L~~~G~~vvl~~r~~~----~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 82 (254)
T PRK08085 7 LAGKNILITGSAQGIGFLLATGLAEYGAEIIINDITAE----RAELAVAKLRQEGIKAHAAPFNVTHKQEVEAAIEHIEK 82 (254)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHcCCEEEEEcCCHH----HHHHHHHHHHhcCCeEEEEecCCCCHHHHHHHHHHHHH
Confidence 56789999999999999999999999999999998543 11221111111 236788999999999998888653
Q ss_pred ---CccEEEEcccccCh----hhhccChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEEcCccccCCCCCCCCCCCC
Q 012176 193 ---PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCKS----VNPQPSIVWASSSSVYGLNTQVPFSESH 261 (469)
Q Consensus 193 ---~~d~Vih~Aa~~~~----~~~~~~~~~~~~~Nv~~~~~ll~aa~~----~~~~~~~V~~SS~~vyg~~~~~~~~E~~ 261 (469)
++|+||||||.... ....++++..+++|+.++..+++++.. .+. ++||++||.....+.
T Consensus 83 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~-~~iv~isS~~~~~~~--------- 152 (254)
T PRK08085 83 DIGPIDVLINNAGIQRRHPFTEFPEQEWNDVIAVNQTAVFLVSQAVARYMVKRQA-GKIINICSMQSELGR--------- 152 (254)
T ss_pred hcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCC-cEEEEEccchhccCC---------
Confidence 57999999996432 123345567899999999999887654 333 489999996543211
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceEe
Q 012176 262 RTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARD 338 (469)
Q Consensus 262 ~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 338 (469)
.+...|+.+|.+.+.+++.++.++ |+++++|+||.+.++..........+...+....++ ..
T Consensus 153 ---~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~pG~~~t~~~~~~~~~~~~~~~~~~~~p~------------~~ 217 (254)
T PRK08085 153 ---DTITPYAASKGAVKMLTRGMCVELARHNIQVNGIAPGYFKTEMTKALVEDEAFTAWLCKRTPA------------AR 217 (254)
T ss_pred ---CCCcchHHHHHHHHHHHHHHHHHHHhhCeEEEEEEeCCCCCcchhhhccCHHHHHHHHhcCCC------------CC
Confidence 245679999999999999998764 899999999999987433211111222222222221 23
Q ss_pred cccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCC
Q 012176 339 FTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTS 374 (469)
Q Consensus 339 ~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~ 374 (469)
+...+|++.+++.++..... ...|++..+.++.
T Consensus 218 ~~~~~~va~~~~~l~~~~~~---~i~G~~i~~dgg~ 250 (254)
T PRK08085 218 WGDPQELIGAAVFLSSKASD---FVNGHLLFVDGGM 250 (254)
T ss_pred CcCHHHHHHHHHHHhCcccc---CCcCCEEEECCCe
Confidence 56789999999888765422 2345777666553
|
|
| >PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.83 E-value=7.6e-19 Score=168.97 Aligned_cols=228 Identities=15% Similarity=0.163 Sum_probs=162.1
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhc-cCCeEEEEecCCCHHHHHHhhccC--
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQ-KHQVFIVEGDLNDAPLLTKLFDVV-- 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~v~~v~~Dl~d~~~l~~~~~~~-- 192 (469)
.++++|+||||+|+||.++++.|+++|++|++++|.... .......... ..++.++.+|++|.+++.++++..
T Consensus 9 l~~k~vlVtG~s~gIG~~la~~l~~~G~~vv~~~r~~~~----~~~~~~~l~~~~~~~~~~~~D~~~~~~i~~~~~~~~~ 84 (255)
T PRK06113 9 LDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADA----ANHVVDEIQQLGGQAFACRCDITSEQELSALADFALS 84 (255)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHH----HHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHH
Confidence 568999999999999999999999999999999885431 1111111111 236788999999999988877653
Q ss_pred ---CccEEEEcccccChh---hhccChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEEcCccccCCCCCCCCCCCCC
Q 012176 193 ---PFTHVLHLAAQAGVR---YAMQNPQSYVASNIAGFVNLLEVCKS----VNPQPSIVWASSSSVYGLNTQVPFSESHR 262 (469)
Q Consensus 193 ---~~d~Vih~Aa~~~~~---~~~~~~~~~~~~Nv~~~~~ll~aa~~----~~~~~~~V~~SS~~vyg~~~~~~~~E~~~ 262 (469)
++|+||||||..... ...++.+..+++|+.++.++++++.. .+. .+||++||.....+.
T Consensus 85 ~~~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~-~~iv~isS~~~~~~~---------- 153 (255)
T PRK06113 85 KLGKVDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKNGG-GVILTITSMAAENKN---------- 153 (255)
T ss_pred HcCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHhhhhHHHHHHHHHHHHHhcCC-cEEEEEecccccCCC----------
Confidence 679999999974322 22345556799999999999999763 333 389999997644211
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceEec
Q 012176 263 TDQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDF 339 (469)
Q Consensus 263 ~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 339 (469)
.+...|+.+|.+.+.+++.++.+ .|++++++.||.+..+.... ...+.+.....+..++ ..+
T Consensus 154 --~~~~~Y~~sK~a~~~~~~~la~~~~~~~i~v~~v~pg~~~t~~~~~-~~~~~~~~~~~~~~~~------------~~~ 218 (255)
T PRK06113 154 --INMTSYASSKAAASHLVRNMAFDLGEKNIRVNGIAPGAILTDALKS-VITPEIEQKMLQHTPI------------RRL 218 (255)
T ss_pred --CCcchhHHHHHHHHHHHHHHHHHhhhhCeEEEEEeccccccccccc-ccCHHHHHHHHhcCCC------------CCC
Confidence 34567999999999999999865 47999999999998764321 1112233333322221 225
Q ss_pred ccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCCcc
Q 012176 340 TYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTSPV 376 (469)
Q Consensus 340 v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~~v 376 (469)
..++|++++++.++..... -..|+++++.++...
T Consensus 219 ~~~~d~a~~~~~l~~~~~~---~~~G~~i~~~gg~~~ 252 (255)
T PRK06113 219 GQPQDIANAALFLCSPAAS---WVSGQILTVSGGGVQ 252 (255)
T ss_pred cCHHHHHHHHHHHcCcccc---CccCCEEEECCCccc
Confidence 6789999999998864322 245689999887643
|
|
| >PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=8.4e-19 Score=167.93 Aligned_cols=223 Identities=13% Similarity=0.080 Sum_probs=159.9
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhh-ccCCeEEEEecCCCHHHHHHhhccC--
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLL-QKHQVFIVEGDLNDAPLLTKLFDVV-- 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~v~~v~~Dl~d~~~l~~~~~~~-- 192 (469)
..+++++||||+|+||.++++.|+++|+.|++++|.... ......... ....+..+.+|++|.++++++++..
T Consensus 3 ~~~~~~lItG~~g~iG~~~a~~l~~~G~~vi~~~r~~~~----~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 78 (253)
T PRK08217 3 LKDKVIVITGGAQGLGRAMAEYLAQKGAKLALIDLNQEK----LEEAVAECGALGTEVRGYAANVTDEEDVEATFAQIAE 78 (253)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHH----HHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHH
Confidence 457899999999999999999999999999999985431 111111111 1346888999999999988877753
Q ss_pred ---CccEEEEcccccCh-------------hhhccChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEEcCccccCCC
Q 012176 193 ---PFTHVLHLAAQAGV-------------RYAMQNPQSYVASNIAGFVNLLEVCK----SVNPQPSIVWASSSSVYGLN 252 (469)
Q Consensus 193 ---~~d~Vih~Aa~~~~-------------~~~~~~~~~~~~~Nv~~~~~ll~aa~----~~~~~~~~V~~SS~~vyg~~ 252 (469)
++|+|||+||.... ....++...++++|+.++..+++++. +......||++||.+.|+.
T Consensus 79 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~~~~iv~~ss~~~~~~- 157 (253)
T PRK08217 79 DFGQLNGLINNAGILRDGLLVKAKDGKVTSKMSLEQFQSVIDVNLTGVFLCGREAAAKMIESGSKGVIINISSIARAGN- 157 (253)
T ss_pred HcCCCCEEEECCCccCcCcccccccccccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCeEEEEEccccccCC-
Confidence 57999999996331 11223445678899999987776543 2222237999999877653
Q ss_pred CCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEee
Q 012176 253 TQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKT 329 (469)
Q Consensus 253 ~~~~~~E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~ 329 (469)
.+...|+.+|.+.|.+++.++.+ .+++++.++||.+.++..... .+.+........+.
T Consensus 158 ------------~~~~~Y~~sK~a~~~l~~~la~~~~~~~i~v~~v~pg~v~t~~~~~~--~~~~~~~~~~~~~~----- 218 (253)
T PRK08217 158 ------------MGQTNYSASKAGVAAMTVTWAKELARYGIRVAAIAPGVIETEMTAAM--KPEALERLEKMIPV----- 218 (253)
T ss_pred ------------CCCchhHHHHHHHHHHHHHHHHHHHHcCcEEEEEeeCCCcCcccccc--CHHHHHHHHhcCCc-----
Confidence 23567999999999999998865 489999999999988754321 13333433333322
Q ss_pred CCCCcceEecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCC
Q 012176 330 QDDREVARDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTS 374 (469)
Q Consensus 330 ~~~~~~~~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~ 374 (469)
..+.+++|+|+++..++... ...|++|++.++.
T Consensus 219 -------~~~~~~~~~a~~~~~l~~~~-----~~~g~~~~~~gg~ 251 (253)
T PRK08217 219 -------GRLGEPEEIAHTVRFIIEND-----YVTGRVLEIDGGL 251 (253)
T ss_pred -------CCCcCHHHHHHHHHHHHcCC-----CcCCcEEEeCCCc
Confidence 23567899999999988643 3456899998864
|
|
| >PRK06114 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.4e-18 Score=167.18 Aligned_cols=229 Identities=15% Similarity=0.102 Sum_probs=159.2
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhc-cCCeEEEEecCCCHHHHHHhhccC--
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQ-KHQVFIVEGDLNDAPLLTKLFDVV-- 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~v~~v~~Dl~d~~~l~~~~~~~-- 192 (469)
.++++++||||+|+||++++++|+++|++|++++|..+. ........... ..++..+.+|++|+++++++++.+
T Consensus 6 ~~~k~~lVtG~s~gIG~~ia~~l~~~G~~v~~~~r~~~~---~~~~~~~~l~~~~~~~~~~~~D~~~~~~i~~~~~~~~~ 82 (254)
T PRK06114 6 LDGQVAFVTGAGSGIGQRIAIGLAQAGADVALFDLRTDD---GLAETAEHIEAAGRRAIQIAADVTSKADLRAAVARTEA 82 (254)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCcch---HHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHH
Confidence 567899999999999999999999999999999986531 11111111111 236788999999999998888753
Q ss_pred ---CccEEEEcccccCh----hhhccChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEEcCccccCCCCCCCCCCCC
Q 012176 193 ---PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCK----SVNPQPSIVWASSSSVYGLNTQVPFSESH 261 (469)
Q Consensus 193 ---~~d~Vih~Aa~~~~----~~~~~~~~~~~~~Nv~~~~~ll~aa~----~~~~~~~~V~~SS~~vyg~~~~~~~~E~~ 261 (469)
++|+||||||.... ....++.+.++++|+.++..+++++. +.+. ++||++||.+.+.....
T Consensus 83 ~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~-~~iv~isS~~~~~~~~~------- 154 (254)
T PRK06114 83 ELGALTLAVNAAGIANANPAEEMEEEQWQTVMDINLTGVFLSCQAEARAMLENGG-GSIVNIASMSGIIVNRG------- 154 (254)
T ss_pred HcCCCCEEEECCCCCCCCChHhCCHHHHHHHHhhcchhhHHHHHHHHHHHHhcCC-cEEEEECchhhcCCCCC-------
Confidence 57999999997432 12344566789999999988877653 3333 48999999765432211
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceEe
Q 012176 262 RTDQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARD 338 (469)
Q Consensus 262 ~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 338 (469)
.+...|+.+|.+.+.+++.++.+ +|+++++|+||.|.++....... ......+....|+ ..
T Consensus 155 ---~~~~~Y~~sKaa~~~l~~~la~e~~~~gi~v~~v~PG~i~t~~~~~~~~-~~~~~~~~~~~p~------------~r 218 (254)
T PRK06114 155 ---LLQAHYNASKAGVIHLSKSLAMEWVGRGIRVNSISPGYTATPMNTRPEM-VHQTKLFEEQTPM------------QR 218 (254)
T ss_pred ---CCcchHHHHHHHHHHHHHHHHHHHhhcCeEEEEEeecCccCcccccccc-hHHHHHHHhcCCC------------CC
Confidence 12467999999999999999875 48999999999998875331111 1112222222221 12
Q ss_pred cccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCC
Q 012176 339 FTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTS 374 (469)
Q Consensus 339 ~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~ 374 (469)
+..++|++.+++.++..... -..|+++.+.++.
T Consensus 219 ~~~~~dva~~~~~l~s~~~~---~~tG~~i~~dgg~ 251 (254)
T PRK06114 219 MAKVDEMVGPAVFLLSDAAS---FCTGVDLLVDGGF 251 (254)
T ss_pred CcCHHHHHHHHHHHcCcccc---CcCCceEEECcCE
Confidence 45689999999988765322 3455788777653
|
|
| >PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.5e-18 Score=166.96 Aligned_cols=224 Identities=16% Similarity=0.106 Sum_probs=156.4
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccC---
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~--- 192 (469)
..+|+++||||+|+||.++++.|+++|++|+++.+... .... .+...++.++.+|++|+++++++++..
T Consensus 5 l~~k~~lItGas~gIG~~~a~~l~~~G~~v~~~~~~~~---~~~~-----~l~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 76 (255)
T PRK06463 5 FKGKVALITGGTRGIGRAIAEAFLREGAKVAVLYNSAE---NEAK-----ELREKGVFTIKCDVGNRDQVKKSKEVVEKE 76 (255)
T ss_pred cCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCcH---HHHH-----HHHhCCCeEEEecCCCHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999998876432 1111 111226889999999999999888754
Q ss_pred --CccEEEEcccccCh----hhhccChHHHHHHHHHHHHHHHHH----HHhcCCCCeEEEEcCccccCCCCCCCCCCCCC
Q 012176 193 --PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEV----CKSVNPQPSIVWASSSSVYGLNTQVPFSESHR 262 (469)
Q Consensus 193 --~~d~Vih~Aa~~~~----~~~~~~~~~~~~~Nv~~~~~ll~a----a~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~ 262 (469)
++|+||||||.... ....++.+..+++|+.++..++++ +++.+. ++||++||...++...
T Consensus 77 ~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~-g~iv~isS~~~~~~~~--------- 146 (255)
T PRK06463 77 FGRVDVLVNNAGIMYLMPFEEFDEEKYNKMIKINLNGAIYTTYEFLPLLKLSKN-GAIVNIASNAGIGTAA--------- 146 (255)
T ss_pred cCCCCEEEECCCcCCCCChhhCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCC-cEEEEEcCHHhCCCCC---------
Confidence 67999999987432 123345567899999997666554 333443 4999999987764211
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeecceecCCCCC---CChHHHHHHHHHcCCceEEEeeCCCCcce
Q 012176 263 TDQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRP---DMAYFFFTKDILQGKTIDVYKTQDDREVA 336 (469)
Q Consensus 263 ~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~Gp~~~~---~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 336 (469)
.....|+.+|.+.+.+++.++.+ +|+++++++||.|-.+.... ......+...+....+ .
T Consensus 147 --~~~~~Y~asKaa~~~~~~~la~e~~~~~i~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~------------~ 212 (255)
T PRK06463 147 --EGTTFYAITKAGIIILTRRLAFELGKYGIRVNAVAPGWVETDMTLSGKSQEEAEKLRELFRNKTV------------L 212 (255)
T ss_pred --CCccHhHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCCCCCchhhcccCccchHHHHHHHHhCCC------------c
Confidence 23467999999999999999876 48999999999986653211 1111112122222221 1
Q ss_pred EecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCC
Q 012176 337 RDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTS 374 (469)
Q Consensus 337 ~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~ 374 (469)
..+..++|++++++.++..... ...|.++.+.++.
T Consensus 213 ~~~~~~~~va~~~~~l~s~~~~---~~~G~~~~~dgg~ 247 (255)
T PRK06463 213 KTTGKPEDIANIVLFLASDDAR---YITGQVIVADGGR 247 (255)
T ss_pred CCCcCHHHHHHHHHHHcChhhc---CCCCCEEEECCCe
Confidence 2346789999999998865432 2446888887765
|
|
| >PRK06398 aldose dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.1e-18 Score=168.31 Aligned_cols=220 Identities=12% Similarity=0.067 Sum_probs=156.4
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccC---
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~--- 192 (469)
.++|+||||||+|+||.+++++|+++|++|++++|.... ...+.++.+|++|+++++++++..
T Consensus 4 l~gk~vlItGas~gIG~~ia~~l~~~G~~Vi~~~r~~~~--------------~~~~~~~~~D~~~~~~i~~~~~~~~~~ 69 (258)
T PRK06398 4 LKDKVAIVTGGSQGIGKAVVNRLKEEGSNVINFDIKEPS--------------YNDVDYFKVDVSNKEQVIKGIDYVISK 69 (258)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCccc--------------cCceEEEEccCCCHHHHHHHHHHHHHH
Confidence 567899999999999999999999999999999985431 126789999999999988888753
Q ss_pred --CccEEEEcccccChh----hhccChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEEcCccccCCCCCCCCCCCCC
Q 012176 193 --PFTHVLHLAAQAGVR----YAMQNPQSYVASNIAGFVNLLEVCKS----VNPQPSIVWASSSSVYGLNTQVPFSESHR 262 (469)
Q Consensus 193 --~~d~Vih~Aa~~~~~----~~~~~~~~~~~~Nv~~~~~ll~aa~~----~~~~~~~V~~SS~~vyg~~~~~~~~E~~~ 262 (469)
++|+||||||..... ...++.+..+++|+.++..+++++.. .+. ++||++||...+.+.
T Consensus 70 ~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~-g~iv~isS~~~~~~~---------- 138 (258)
T PRK06398 70 YGRIDILVNNAGIESYGAIHAVEEDEWDRIINVNVNGIFLMSKYTIPYMLKQDK-GVIINIASVQSFAVT---------- 138 (258)
T ss_pred cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCC-eEEEEeCcchhccCC----------
Confidence 579999999974321 12334556789999999999888653 333 499999998766432
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHh--CCcEEEEeecceecCCCCCC------ChHHHHHHHHHcCCceEEEeeCCCCc
Q 012176 263 TDQPASLYAATKKAGEEIAHTYNHIY--GLALTGLRFFTVYGPWGRPD------MAYFFFTKDILQGKTIDVYKTQDDRE 334 (469)
Q Consensus 263 ~~~p~~~Y~~sK~~~E~~~~~~~~~~--gi~~~ilRp~~v~Gp~~~~~------~~~~~~~~~~~~g~~~~~~~~~~~~~ 334 (469)
.+...|+.+|.+.+.+++.++.++ ++++++|+||.|-.+..... .....+.+....-. ...
T Consensus 139 --~~~~~Y~~sKaal~~~~~~la~e~~~~i~vn~i~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~ 207 (258)
T PRK06398 139 --RNAAAYVTSKHAVLGLTRSIAVDYAPTIRCVAVCPGSIRTPLLEWAAELEVGKDPEHVERKIREWG---------EMH 207 (258)
T ss_pred --CCCchhhhhHHHHHHHHHHHHHHhCCCCEEEEEecCCccchHHhhhhhccccCChhhhHHHHHhhh---------hcC
Confidence 345789999999999999998875 39999999999876532110 00000000000000 011
Q ss_pred ceEecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCC
Q 012176 335 VARDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTS 374 (469)
Q Consensus 335 ~~~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~ 374 (469)
....+..++|+|++++.++..... ...|+++.+.++.
T Consensus 208 ~~~~~~~p~eva~~~~~l~s~~~~---~~~G~~i~~dgg~ 244 (258)
T PRK06398 208 PMKRVGKPEEVAYVVAFLASDLAS---FITGECVTVDGGL 244 (258)
T ss_pred CcCCCcCHHHHHHHHHHHcCcccC---CCCCcEEEECCcc
Confidence 122456789999999988765422 2345788777764
|
|
| >PRK08324 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.82 E-value=6.3e-19 Score=192.12 Aligned_cols=236 Identities=18% Similarity=0.124 Sum_probs=166.8
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccC---
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~--- 192 (469)
..+++|+||||+|+||.++++.|+++|++|++++|+.. .............++.++.+|++|.++++++++..
T Consensus 420 l~gk~vLVTGasggIG~~la~~L~~~Ga~Vvl~~r~~~----~~~~~~~~l~~~~~v~~v~~Dvtd~~~v~~~~~~~~~~ 495 (681)
T PRK08324 420 LAGKVALVTGAAGGIGKATAKRLAAEGACVVLADLDEE----AAEAAAAELGGPDRALGVACDVTDEAAVQAAFEEAALA 495 (681)
T ss_pred CCCCEEEEecCCCHHHHHHHHHHHHCcCEEEEEeCCHH----HHHHHHHHHhccCcEEEEEecCCCHHHHHHHHHHHHHH
Confidence 46799999999999999999999999999999998543 11111111111247889999999999998888743
Q ss_pred --CccEEEEcccccChh----hhccChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEEcCccccCCCCCCCCCCCCC
Q 012176 193 --PFTHVLHLAAQAGVR----YAMQNPQSYVASNIAGFVNLLEVCK----SVNPQPSIVWASSSSVYGLNTQVPFSESHR 262 (469)
Q Consensus 193 --~~d~Vih~Aa~~~~~----~~~~~~~~~~~~Nv~~~~~ll~aa~----~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~ 262 (469)
++|+||||||..... ...+..+..+++|+.++..+++++. +.+..++||++||...+.+.
T Consensus 496 ~g~iDvvI~~AG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~g~iV~vsS~~~~~~~---------- 565 (681)
T PRK08324 496 FGGVDIVVSNAGIAISGPIEETSDEDWRRSFDVNATGHFLVAREAVRIMKAQGLGGSIVFIASKNAVNPG---------- 565 (681)
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCcEEEEECCccccCCC----------
Confidence 679999999964321 2234456789999999999987764 33432489999997655322
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeccee-cCCCCCCChHHHHHHHHHcCCceE----EEeeCCCCc
Q 012176 263 TDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVY-GPWGRPDMAYFFFTKDILQGKTID----VYKTQDDRE 334 (469)
Q Consensus 263 ~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~-Gp~~~~~~~~~~~~~~~~~g~~~~----~~~~~~~~~ 334 (469)
.....|+.+|.+.+.+++.++.++ |+++++|+|+.|| +++....... ..+....+.... .+ ..+.
T Consensus 566 --~~~~~Y~asKaa~~~l~~~la~e~~~~gIrvn~v~Pg~v~~~t~~~~~~~~--~~~~~~~g~~~~~~~~~~---~~~~ 638 (681)
T PRK08324 566 --PNFGAYGAAKAAELHLVRQLALELGPDGIRVNGVNPDAVVRGSGIWTGEWI--EARAAAYGLSEEELEEFY---RARN 638 (681)
T ss_pred --CCcHHHHHHHHHHHHHHHHHHHHhcccCeEEEEEeCceeecCCccccchhh--hhhhhhccCChHHHHHHH---HhcC
Confidence 235789999999999999998765 5999999999998 6532211110 001111121110 12 2345
Q ss_pred ceEecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCCc
Q 012176 335 VARDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTSP 375 (469)
Q Consensus 335 ~~~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~~ 375 (469)
....+++++|+|++++.++..... ...|++|++.++..
T Consensus 639 ~l~~~v~~~DvA~a~~~l~s~~~~---~~tG~~i~vdgG~~ 676 (681)
T PRK08324 639 LLKREVTPEDVAEAVVFLASGLLS---KTTGAIITVDGGNA 676 (681)
T ss_pred CcCCccCHHHHHHHHHHHhCcccc---CCcCCEEEECCCch
Confidence 567899999999999998753221 34568999998764
|
|
| >PRK07814 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=8.9e-19 Score=169.38 Aligned_cols=226 Identities=14% Similarity=0.072 Sum_probs=157.6
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhh-ccCCeEEEEecCCCHHHHHHhhccC--
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLL-QKHQVFIVEGDLNDAPLLTKLFDVV-- 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~v~~v~~Dl~d~~~l~~~~~~~-- 192 (469)
.++++||||||+|+||.++++.|+++|++|++++|..+. ......... ...++.++.+|++|++++.++++.+
T Consensus 8 ~~~~~vlItGasggIG~~~a~~l~~~G~~Vi~~~r~~~~----~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 83 (263)
T PRK07814 8 LDDQVAVVTGAGRGLGAAIALAFAEAGADVLIAARTESQ----LDEVAEQIRAAGRRAHVVAADLAHPEATAGLAGQAVE 83 (263)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHH----HHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHH
Confidence 567899999999999999999999999999999995431 111111111 1246889999999999998888754
Q ss_pred ---CccEEEEcccccCh----hhhccChHHHHHHHHHHHHHHHHHHHh-----cCCCCeEEEEcCccccCCCCCCCCCCC
Q 012176 193 ---PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCKS-----VNPQPSIVWASSSSVYGLNTQVPFSES 260 (469)
Q Consensus 193 ---~~d~Vih~Aa~~~~----~~~~~~~~~~~~~Nv~~~~~ll~aa~~-----~~~~~~~V~~SS~~vyg~~~~~~~~E~ 260 (469)
++|+|||+||.... ....++.+..+++|+.++.++++++.. .+. ++||++||.....+.
T Consensus 84 ~~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~-g~iv~~sS~~~~~~~-------- 154 (263)
T PRK07814 84 AFGRLDIVVNNVGGTMPNPLLSTSTKDLADAFTFNVATAHALTVAAVPLMLEHSGG-GSVINISSTMGRLAG-------- 154 (263)
T ss_pred HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhcHHHHHHHHHHHHHHHhhcCC-eEEEEEccccccCCC--------
Confidence 67999999986432 223355667899999999999999864 233 489999996443211
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHh--CCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceEe
Q 012176 261 HRTDQPASLYAATKKAGEEIAHTYNHIY--GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARD 338 (469)
Q Consensus 261 ~~~~~p~~~Y~~sK~~~E~~~~~~~~~~--gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 338 (469)
.+...|+.+|.+.+.+++.++.++ +++++.|+||.+..+....-..-..+...+....++ ..
T Consensus 155 ----~~~~~Y~~sK~a~~~~~~~~~~e~~~~i~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~------------~~ 218 (263)
T PRK07814 155 ----RGFAAYGTAKAALAHYTRLAALDLCPRIRVNAIAPGSILTSALEVVAANDELRAPMEKATPL------------RR 218 (263)
T ss_pred ----CCCchhHHHHHHHHHHHHHHHHHHCCCceEEEEEeCCCcCchhhhccCCHHHHHHHHhcCCC------------CC
Confidence 345789999999999999998765 589999999998765322100001121222111111 12
Q ss_pred cccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCC
Q 012176 339 FTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNT 373 (469)
Q Consensus 339 ~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~ 373 (469)
...++|++++++.++..... ...|+++.+.++
T Consensus 219 ~~~~~~va~~~~~l~~~~~~---~~~g~~~~~~~~ 250 (263)
T PRK07814 219 LGDPEDIAAAAVYLASPAGS---YLTGKTLEVDGG 250 (263)
T ss_pred CcCHHHHHHHHHHHcCcccc---CcCCCEEEECCC
Confidence 45789999999998865422 234577777654
|
|
| >PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.9e-18 Score=165.73 Aligned_cols=224 Identities=13% Similarity=0.084 Sum_probs=156.6
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccC---
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~--- 192 (469)
.++|+++||||+|+||+++++.|+++|++|++..+... ......... . ..++.++.+|+.|++++.++++..
T Consensus 3 l~~k~ilItGas~gIG~~la~~l~~~G~~vv~~~~~~~---~~~~~~~~~-~-~~~~~~~~~D~~~~~~~~~~~~~~~~~ 77 (253)
T PRK08642 3 ISEQTVLVTGGSRGLGAAIARAFAREGARVVVNYHQSE---DAAEALADE-L-GDRAIALQADVTDREQVQAMFATATEH 77 (253)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHHHCCCeEEEEcCCCH---HHHHHHHHH-h-CCceEEEEcCCCCHHHHHHHHHHHHHH
Confidence 35689999999999999999999999999988765322 111111111 1 247889999999999998888753
Q ss_pred ---CccEEEEcccccCh----------hhhccChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEEcCccccCCCCCC
Q 012176 193 ---PFTHVLHLAAQAGV----------RYAMQNPQSYVASNIAGFVNLLEVCKS----VNPQPSIVWASSSSVYGLNTQV 255 (469)
Q Consensus 193 ---~~d~Vih~Aa~~~~----------~~~~~~~~~~~~~Nv~~~~~ll~aa~~----~~~~~~~V~~SS~~vyg~~~~~ 255 (469)
++|+||||||.... ....++....+++|+.++..+++++.. .+. .+||++||.....+
T Consensus 78 ~g~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~-g~iv~iss~~~~~~---- 152 (253)
T PRK08642 78 FGKPITTVVNNALADFSFDGDARKKADDITWEDFQQQLEGSVKGALNTIQAALPGMREQGF-GRIINIGTNLFQNP---- 152 (253)
T ss_pred hCCCCeEEEECCCccccccccCCCCcccCCHHHHHHHHhhhhhHHHHHHHHHHHHHHhcCC-eEEEEECCccccCC----
Confidence 37999999985211 112234457899999999999998753 333 38999998543321
Q ss_pred CCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCC
Q 012176 256 PFSESHRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDD 332 (469)
Q Consensus 256 ~~~E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 332 (469)
..+...|+.+|.+.|.+++.++.++ |++++.|+||.+..+...... .....+.+....+
T Consensus 153 --------~~~~~~Y~~sK~a~~~l~~~la~~~~~~~i~v~~i~pG~v~t~~~~~~~-~~~~~~~~~~~~~--------- 214 (253)
T PRK08642 153 --------VVPYHDYTTAKAALLGLTRNLAAELGPYGITVNMVSGGLLRTTDASAAT-PDEVFDLIAATTP--------- 214 (253)
T ss_pred --------CCCccchHHHHHHHHHHHHHHHHHhCccCeEEEEEeecccCCchhhccC-CHHHHHHHHhcCC---------
Confidence 1345689999999999999998774 799999999998765322111 1122222222211
Q ss_pred CcceEecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCC
Q 012176 333 REVARDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNT 373 (469)
Q Consensus 333 ~~~~~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~ 373 (469)
...+.+++|++++++.++..... ...|+++.+.++
T Consensus 215 ---~~~~~~~~~va~~~~~l~~~~~~---~~~G~~~~vdgg 249 (253)
T PRK08642 215 ---LRKVTTPQEFADAVLFFASPWAR---AVTGQNLVVDGG 249 (253)
T ss_pred ---cCCCCCHHHHHHHHHHHcCchhc---CccCCEEEeCCC
Confidence 12378899999999999875432 345688877765
|
|
| >PRK06179 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.3e-19 Score=174.00 Aligned_cols=165 Identities=20% Similarity=0.221 Sum_probs=131.9
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccC----
Q 012176 117 NGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV---- 192 (469)
Q Consensus 117 ~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~---- 192 (469)
++++|+||||+|+||++++++|+++|++|++++|+..... ...+++++.+|++|+++++++++.+
T Consensus 3 ~~~~vlVtGasg~iG~~~a~~l~~~g~~V~~~~r~~~~~~-----------~~~~~~~~~~D~~d~~~~~~~~~~~~~~~ 71 (270)
T PRK06179 3 NSKVALVTGASSGIGRATAEKLARAGYRVFGTSRNPARAA-----------PIPGVELLELDVTDDASVQAAVDEVIARA 71 (270)
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCChhhcc-----------ccCCCeeEEeecCCHHHHHHHHHHHHHhC
Confidence 4578999999999999999999999999999999543111 1237889999999999999988764
Q ss_pred -CccEEEEcccccChh----hhccChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEEcCccccCCCCCCCCCCCCCC
Q 012176 193 -PFTHVLHLAAQAGVR----YAMQNPQSYVASNIAGFVNLLEVC----KSVNPQPSIVWASSSSVYGLNTQVPFSESHRT 263 (469)
Q Consensus 193 -~~d~Vih~Aa~~~~~----~~~~~~~~~~~~Nv~~~~~ll~aa----~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~ 263 (469)
++|+||||||..... ...++.+..+++|+.++.++++++ ++.+.+ +||++||...+...
T Consensus 72 g~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~-~iv~isS~~~~~~~----------- 139 (270)
T PRK06179 72 GRIDVLVNNAGVGLAGAAEESSIAQAQALFDTNVFGILRMTRAVLPHMRAQGSG-RIINISSVLGFLPA----------- 139 (270)
T ss_pred CCCCEEEECCCCCCCcCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCc-eEEEECCccccCCC-----------
Confidence 579999999974332 223445678999999999998874 455655 99999997665422
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeecceecCCC
Q 012176 264 DQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWG 305 (469)
Q Consensus 264 ~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~Gp~~ 305 (469)
.....|+.+|.+.|.+++.++.+ .|+++++++||.+.++..
T Consensus 140 -~~~~~Y~~sK~a~~~~~~~l~~el~~~gi~v~~v~pg~~~t~~~ 183 (270)
T PRK06179 140 -PYMALYAASKHAVEGYSESLDHEVRQFGIRVSLVEPAYTKTNFD 183 (270)
T ss_pred -CCccHHHHHHHHHHHHHHHHHHHHhhhCcEEEEEeCCCcccccc
Confidence 23467999999999999988765 589999999999988743
|
|
| >PRK12747 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=2e-18 Score=165.71 Aligned_cols=229 Identities=14% Similarity=0.060 Sum_probs=154.3
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhh-ccCCeEEEEecCCCHHHHHHhhcc---
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLL-QKHQVFIVEGDLNDAPLLTKLFDV--- 191 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~v~~v~~Dl~d~~~l~~~~~~--- 191 (469)
.++|+++||||+|+||.+++++|++.|++|++..+... ........... ....+..+.+|+.|.+.++.+++.
T Consensus 2 ~~~k~~lItGas~gIG~~ia~~l~~~G~~v~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 78 (252)
T PRK12747 2 LKGKVALVTGASRGIGRAIAKRLANDGALVAIHYGNRK---EEAEETVYEIQSNGGSAFSIGANLESLHGVEALYSSLDN 78 (252)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCCeEEEEcCCCH---HHHHHHHHHHHhcCCceEEEecccCCHHHHHHHHHHHHH
Confidence 35689999999999999999999999999988754221 11111111111 123577889999998877655542
Q ss_pred --------CCccEEEEcccccChh----hhccChHHHHHHHHHHHHHHHHHHHhcC-CCCeEEEEcCccccCCCCCCCCC
Q 012176 192 --------VPFTHVLHLAAQAGVR----YAMQNPQSYVASNIAGFVNLLEVCKSVN-PQPSIVWASSSSVYGLNTQVPFS 258 (469)
Q Consensus 192 --------~~~d~Vih~Aa~~~~~----~~~~~~~~~~~~Nv~~~~~ll~aa~~~~-~~~~~V~~SS~~vyg~~~~~~~~ 258 (469)
.++|+||||||..... ...+..+.++++|+.++..+++++.... ..++||++||...+.+.
T Consensus 79 ~~~~~~g~~~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~g~iv~isS~~~~~~~------ 152 (252)
T PRK12747 79 ELQNRTGSTKFDILINNAGIGPGAFIEETTEQFFDRMVSVNAKAPFFIIQQALSRLRDNSRIINISSAATRISL------ 152 (252)
T ss_pred HhhhhcCCCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHhhcCCeEEEECCcccccCC------
Confidence 1579999999964321 1223346788999999999998876532 22489999998765422
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcc
Q 012176 259 ESHRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREV 335 (469)
Q Consensus 259 E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 335 (469)
.....|+.+|++.+.+++.++.++ |+++++|+||.|.++....... .......... ...
T Consensus 153 ------~~~~~Y~~sKaa~~~~~~~la~e~~~~girvn~v~Pg~v~t~~~~~~~~-~~~~~~~~~~-----------~~~ 214 (252)
T PRK12747 153 ------PDFIAYSMTKGAINTMTFTLAKQLGARGITVNAILPGFIKTDMNAELLS-DPMMKQYATT-----------ISA 214 (252)
T ss_pred ------CCchhHHHHHHHHHHHHHHHHHHHhHcCCEEEEEecCCccCchhhhccc-CHHHHHHHHh-----------cCc
Confidence 234679999999999999988765 8999999999998874321000 0011111110 001
Q ss_pred eEecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCC
Q 012176 336 ARDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTS 374 (469)
Q Consensus 336 ~~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~ 374 (469)
...+.+++|+++++..++..... ...|+++.+.++.
T Consensus 215 ~~~~~~~~dva~~~~~l~s~~~~---~~~G~~i~vdgg~ 250 (252)
T PRK12747 215 FNRLGEVEDIADTAAFLASPDSR---WVTGQLIDVSGGS 250 (252)
T ss_pred ccCCCCHHHHHHHHHHHcCcccc---CcCCcEEEecCCc
Confidence 23467899999999988764321 2345778776653
|
|
| >PRK07041 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=9.7e-19 Score=165.40 Aligned_cols=220 Identities=17% Similarity=0.099 Sum_probs=158.1
Q ss_pred EEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccC-CccEEEEc
Q 012176 122 LVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV-PFTHVLHL 200 (469)
Q Consensus 122 lVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~-~~d~Vih~ 200 (469)
+||||+|+||++++++|+++|++|++++|+.+ .............+++++.+|++|++++.++++.. ++|++||+
T Consensus 1 lItGas~~iG~~~a~~l~~~G~~v~~~~r~~~----~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~id~li~~ 76 (230)
T PRK07041 1 LVVGGSSGIGLALARAFAAEGARVTIASRSRD----RLAAAARALGGGAPVRTAALDITDEAAVDAFFAEAGPFDHVVIT 76 (230)
T ss_pred CeecCCChHHHHHHHHHHHCCCEEEEEeCCHH----HHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHhcCCCCEEEEC
Confidence 69999999999999999999999999999532 11111111112347889999999999999999865 46999999
Q ss_pred ccccChh----hhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcCccccCCCCCCCCCCCCCCCCCCChHHHHHHH
Q 012176 201 AAQAGVR----YAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKA 276 (469)
Q Consensus 201 Aa~~~~~----~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y~~sK~~ 276 (469)
+|..... ...++.+..+++|+.++.+++++....+. ++||++||.+.+... .+.+.|+.+|.+
T Consensus 77 ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-g~iv~~ss~~~~~~~------------~~~~~Y~~sK~a 143 (230)
T PRK07041 77 AADTPGGPVRALPLAAAQAAMDSKFWGAYRVARAARIAPG-GSLTFVSGFAAVRPS------------ASGVLQGAINAA 143 (230)
T ss_pred CCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHhhhhhcCC-eEEEEECchhhcCCC------------CcchHHHHHHHH
Confidence 9974321 23345678899999999999996655444 499999998877532 345789999999
Q ss_pred HHHHHHHHHHHh-CCcEEEEeecceecCCCCC--CChHHHHHHHHHcCCceEEEeeCCCCcceEecccHHHHHHHHHHHh
Q 012176 277 GEEIAHTYNHIY-GLALTGLRFFTVYGPWGRP--DMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGAT 353 (469)
Q Consensus 277 ~E~~~~~~~~~~-gi~~~ilRp~~v~Gp~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~~~~~~~ 353 (469)
.+.+++.++.++ +++++.++||.+-.+.... ......++.......+. ..+..++|+|++++.++
T Consensus 144 ~~~~~~~la~e~~~irv~~i~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~dva~~~~~l~ 211 (230)
T PRK07041 144 LEALARGLALELAPVRVNTVSPGLVDTPLWSKLAGDAREAMFAAAAERLPA------------RRVGQPEDVANAILFLA 211 (230)
T ss_pred HHHHHHHHHHHhhCceEEEEeecccccHHHHhhhccchHHHHHHHHhcCCC------------CCCcCHHHHHHHHHHHh
Confidence 999999998775 6899999999987653211 00001122222222221 11346799999999998
Q ss_pred ccCCCCCCCCCceEEEeCCCCc
Q 012176 354 GSGGKKRGPAQLRVYNLGNTSP 375 (469)
Q Consensus 354 ~~~~~~~~~~~~~iyni~~~~~ 375 (469)
.+. ...|++|++.++.+
T Consensus 212 ~~~-----~~~G~~~~v~gg~~ 228 (230)
T PRK07041 212 ANG-----FTTGSTVLVDGGHA 228 (230)
T ss_pred cCC-----CcCCcEEEeCCCee
Confidence 753 24458999988764
|
|
| >PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.3e-18 Score=167.06 Aligned_cols=226 Identities=12% Similarity=0.100 Sum_probs=157.7
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccC---
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~--- 192 (469)
.++|+++||||+++||++++++|+++|++|++++|... +....... ....++.++.+|++|+++++++++..
T Consensus 6 l~~k~~lItGas~gIG~aia~~l~~~G~~vv~~~~~~~---~~~~~~~~--~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 80 (251)
T PRK12481 6 LNGKVAIITGCNTGLGQGMAIGLAKAGADIVGVGVAEA---PETQAQVE--ALGRKFHFITADLIQQKDIDSIVSQAVEV 80 (251)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCchH---HHHHHHHH--HcCCeEEEEEeCCCCHHHHHHHHHHHHHH
Confidence 56789999999999999999999999999999987431 11111111 11346889999999999999888753
Q ss_pred --CccEEEEcccccCh----hhhccChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEEcCccccCCCCCCCCCCCCC
Q 012176 193 --PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCKS----VNPQPSIVWASSSSVYGLNTQVPFSESHR 262 (469)
Q Consensus 193 --~~d~Vih~Aa~~~~----~~~~~~~~~~~~~Nv~~~~~ll~aa~~----~~~~~~~V~~SS~~vyg~~~~~~~~E~~~ 262 (469)
++|++|||||.... ....++++.++++|+.++..+++++.. .+..++||++||...+.+.
T Consensus 81 ~g~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~~~~g~ii~isS~~~~~~~---------- 150 (251)
T PRK12481 81 MGHIDILINNAGIIRRQDLLEFGNKDWDDVININQKTVFFLSQAVAKQFVKQGNGGKIINIASMLSFQGG---------- 150 (251)
T ss_pred cCCCCEEEECCCcCCCCCcccCCHHHHHHHheeCcHHHHHHHHHHHHHHHHcCCCCEEEEeCChhhcCCC----------
Confidence 58999999997432 123455677899999999988887643 3323489999998766432
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceEec
Q 012176 263 TDQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDF 339 (469)
Q Consensus 263 ~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 339 (469)
.....|+.+|.+.+.+++.++.+ +|++++.|+||.|-.+............+.+....|. ..+
T Consensus 151 --~~~~~Y~asK~a~~~l~~~la~e~~~~girvn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~p~------------~~~ 216 (251)
T PRK12481 151 --IRVPSYTASKSAVMGLTRALATELSQYNINVNAIAPGYMATDNTAALRADTARNEAILERIPA------------SRW 216 (251)
T ss_pred --CCCcchHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCCccCchhhcccChHHHHHHHhcCCC------------CCC
Confidence 22356999999999999998875 4899999999999765322100001111222222111 125
Q ss_pred ccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCC
Q 012176 340 TYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNT 373 (469)
Q Consensus 340 v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~ 373 (469)
...+|++++++.++..... ...|+++.+.++
T Consensus 217 ~~peeva~~~~~L~s~~~~---~~~G~~i~vdgg 247 (251)
T PRK12481 217 GTPDDLAGPAIFLSSSASD---YVTGYTLAVDGG 247 (251)
T ss_pred cCHHHHHHHHHHHhCcccc---CcCCceEEECCC
Confidence 6789999999998864322 344577777655
|
|
| >TIGR01830 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) reductase | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.4e-18 Score=165.02 Aligned_cols=219 Identities=16% Similarity=0.146 Sum_probs=156.0
Q ss_pred EEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhc-cCCeEEEEecCCCHHHHHHhhccC-----Cc
Q 012176 121 VLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQ-KHQVFIVEGDLNDAPLLTKLFDVV-----PF 194 (469)
Q Consensus 121 VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~v~~v~~Dl~d~~~l~~~~~~~-----~~ 194 (469)
|+|||++|+||.++++.|+++|++|++++|.... ........... ...+.++.+|++|.+++++++++. ++
T Consensus 1 vlItG~~g~iG~~la~~l~~~G~~v~~~~r~~~~---~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 77 (239)
T TIGR01830 1 ALVTGASRGIGRAIALKLAKEGAKVIITYRSSEE---GAEEVVEELKAYGVKALGVVCDVSDREDVKAVVEEIEEELGPI 77 (239)
T ss_pred CEEECCCcHHHHHHHHHHHHCCCEEEEEeCCchh---HHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHhCCC
Confidence 5899999999999999999999999999986521 11111111111 225889999999999998888753 57
Q ss_pred cEEEEcccccCh----hhhccChHHHHHHHHHHHHHHHHHHHhc----CCCCeEEEEcCc-cccCCCCCCCCCCCCCCCC
Q 012176 195 THVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCKSV----NPQPSIVWASSS-SVYGLNTQVPFSESHRTDQ 265 (469)
Q Consensus 195 d~Vih~Aa~~~~----~~~~~~~~~~~~~Nv~~~~~ll~aa~~~----~~~~~~V~~SS~-~vyg~~~~~~~~E~~~~~~ 265 (469)
|+|||++|.... ....+.++..++.|+.++.++++++... +. ++||++||. ++||. .
T Consensus 78 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~-~~~v~~sS~~~~~g~-------------~ 143 (239)
T TIGR01830 78 DILVNNAGITRDNLLMRMKEEDWDAVIDTNLTGVFNLTQAVLRIMIKQRS-GRIINISSVVGLMGN-------------A 143 (239)
T ss_pred CEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCC-eEEEEECCccccCCC-------------C
Confidence 999999997432 2233456778999999999999988653 33 389999996 44542 2
Q ss_pred CCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceEecccH
Q 012176 266 PASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYI 342 (469)
Q Consensus 266 p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v 342 (469)
+...|+.+|.+.+.+++.++++ .|+++++++||.+.++.... ....+...+....+. ..+.++
T Consensus 144 ~~~~y~~~k~a~~~~~~~l~~~~~~~g~~~~~i~pg~~~~~~~~~--~~~~~~~~~~~~~~~------------~~~~~~ 209 (239)
T TIGR01830 144 GQANYAASKAGVIGFTKSLAKELASRNITVNAVAPGFIDTDMTDK--LSEKVKKKILSQIPL------------GRFGTP 209 (239)
T ss_pred CCchhHHHHHHHHHHHHHHHHHHhhcCeEEEEEEECCCCChhhhh--cChHHHHHHHhcCCc------------CCCcCH
Confidence 3467999999999998888765 48999999999987753321 112222333322221 225678
Q ss_pred HHHHHHHHHHhccCCCCCCCCCceEEEeCCC
Q 012176 343 DDVVKGCVGATGSGGKKRGPAQLRVYNLGNT 373 (469)
Q Consensus 343 ~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~ 373 (469)
+|++++++.++..... ...+++||+.++
T Consensus 210 ~~~a~~~~~~~~~~~~---~~~g~~~~~~~g 237 (239)
T TIGR01830 210 EEVANAVAFLASDEAS---YITGQVIHVDGG 237 (239)
T ss_pred HHHHHHHHHHhCcccC---CcCCCEEEeCCC
Confidence 9999999988854321 345689999765
|
This model represents 3-oxoacyl-[ACP] reductase, also called 3-ketoacyl-acyl carrier protein reductase, an enzyme of fatty acid biosynthesis. |
| >PRK06124 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.5e-18 Score=166.95 Aligned_cols=227 Identities=13% Similarity=0.056 Sum_probs=160.9
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhh-ccCCeEEEEecCCCHHHHHHhhccC--
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLL-QKHQVFIVEGDLNDAPLLTKLFDVV-- 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~v~~v~~Dl~d~~~l~~~~~~~-- 192 (469)
.++|+|+||||+|+||++++++|+++|++|++++|+.+ .......... ...++.++.+|++|++++.++++++
T Consensus 9 ~~~k~ilItGas~~IG~~la~~l~~~G~~v~~~~r~~~----~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 84 (256)
T PRK06124 9 LAGQVALVTGSARGLGFEIARALAGAGAHVLVNGRNAA----TLEAAVAALRAAGGAAEALAFDIADEEAVAAAFARIDA 84 (256)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHcCCeEEEEeCCHH----HHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999643 1222222111 1236889999999999988888753
Q ss_pred ---CccEEEEcccccCh----hhhccChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEEcCccccCCCCCCCCCCCC
Q 012176 193 ---PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCKS----VNPQPSIVWASSSSVYGLNTQVPFSESH 261 (469)
Q Consensus 193 ---~~d~Vih~Aa~~~~----~~~~~~~~~~~~~Nv~~~~~ll~aa~~----~~~~~~~V~~SS~~vyg~~~~~~~~E~~ 261 (469)
++|+||||+|.... +...++.+..+++|+.++..+++++.+ .+.. +||++||...+.+.
T Consensus 85 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~-~iv~~ss~~~~~~~--------- 154 (256)
T PRK06124 85 EHGRLDILVNNVGARDRRPLAELDDAAIRALLETDLVAPILLSRLAAQRMKRQGYG-RIIAITSIAGQVAR--------- 154 (256)
T ss_pred hcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCc-EEEEEeechhccCC---------
Confidence 57999999997432 123345567899999999999977643 4443 89999997654322
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceEe
Q 012176 262 RTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARD 338 (469)
Q Consensus 262 ~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 338 (469)
.....|+.+|.+.+.+++.++.++ ++++++|+||.|.++.......-..+...+....+ ...
T Consensus 155 ---~~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~i~pg~v~t~~~~~~~~~~~~~~~~~~~~~------------~~~ 219 (256)
T PRK06124 155 ---AGDAVYPAAKQGLTGLMRALAAEFGPHGITSNAIAPGYFATETNAAMAADPAVGPWLAQRTP------------LGR 219 (256)
T ss_pred ---CCccHhHHHHHHHHHHHHHHHHHHHHhCcEEEEEEECCccCcchhhhccChHHHHHHHhcCC------------CCC
Confidence 234679999999999999888664 79999999999999853221111122222222211 123
Q ss_pred cccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCC
Q 012176 339 FTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTS 374 (469)
Q Consensus 339 ~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~ 374 (469)
+++++|++.+++.++..+.. ...|+.+.+.++.
T Consensus 220 ~~~~~~~a~~~~~l~~~~~~---~~~G~~i~~dgg~ 252 (256)
T PRK06124 220 WGRPEEIAGAAVFLASPAAS---YVNGHVLAVDGGY 252 (256)
T ss_pred CCCHHHHHHHHHHHcCcccC---CcCCCEEEECCCc
Confidence 78899999999999876532 2335777776553
|
|
| >PRK10538 malonic semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=7.1e-19 Score=168.55 Aligned_cols=206 Identities=16% Similarity=0.109 Sum_probs=144.5
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccC-----C
Q 012176 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV-----P 193 (469)
Q Consensus 119 ~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~-----~ 193 (469)
|+|+||||+|+||.++++.|+++|++|++++|... ........ . ..++.++.+|+.|.++++++++.. +
T Consensus 1 ~~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~----~~~~~~~~-~-~~~~~~~~~Dl~~~~~i~~~~~~~~~~~~~ 74 (248)
T PRK10538 1 MIVLVTGATAGFGECITRRFIQQGHKVIATGRRQE----RLQELKDE-L-GDNLYIAQLDVRNRAAIEEMLASLPAEWRN 74 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEECCHH----HHHHHHHH-h-ccceEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence 68999999999999999999999999999999542 11111111 1 236889999999999988887642 5
Q ss_pred ccEEEEcccccCh-----hhhccChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEEcCccccCCCCCCCCCCCCCCC
Q 012176 194 FTHVLHLAAQAGV-----RYAMQNPQSYVASNIAGFVNLLEVC----KSVNPQPSIVWASSSSVYGLNTQVPFSESHRTD 264 (469)
Q Consensus 194 ~d~Vih~Aa~~~~-----~~~~~~~~~~~~~Nv~~~~~ll~aa----~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~ 264 (469)
+|+|||+||.... ....++.+.++++|+.++..+++++ ++.+.. +||++||.+.+.+.
T Consensus 75 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~-~iv~isS~~~~~~~------------ 141 (248)
T PRK10538 75 IDVLVNNAGLALGLEPAHKASVEDWETMIDTNNKGLVYMTRAVLPGMVERNHG-HIINIGSTAGSWPY------------ 141 (248)
T ss_pred CCEEEECCCccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCc-EEEEECCcccCCCC------------
Confidence 7999999986321 1233455678999999977766664 445544 89999997654211
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceEeccc
Q 012176 265 QPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTY 341 (469)
Q Consensus 265 ~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~ 341 (469)
.+...|+.+|.+.|.+.+.++.++ ++++++|+||.+.|+......+... .... ...+ ....++.
T Consensus 142 ~~~~~Y~~sK~~~~~~~~~l~~~~~~~~i~v~~v~pg~i~~~~~~~~~~~~~-~~~~-----~~~~-------~~~~~~~ 208 (248)
T PRK10538 142 AGGNVYGATKAFVRQFSLNLRTDLHGTAVRVTDIEPGLVGGTEFSNVRFKGD-DGKA-----EKTY-------QNTVALT 208 (248)
T ss_pred CCCchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCeecccccchhhccCc-HHHH-----Hhhc-------cccCCCC
Confidence 345689999999999999998764 7999999999998763221000000 0000 0001 0113468
Q ss_pred HHHHHHHHHHHhccC
Q 012176 342 IDDVVKGCVGATGSG 356 (469)
Q Consensus 342 v~Dva~~~~~~~~~~ 356 (469)
++|+|++++.++..+
T Consensus 209 ~~dvA~~~~~l~~~~ 223 (248)
T PRK10538 209 PEDVSEAVWWVATLP 223 (248)
T ss_pred HHHHHHHHHHHhcCC
Confidence 999999999998765
|
|
| >PRK08265 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=5.7e-19 Score=170.60 Aligned_cols=227 Identities=14% Similarity=0.041 Sum_probs=157.5
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccC---
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~--- 192 (469)
.++++++||||+|+||++++++|+++|++|++++|+.+. ..+..... ..++.++.+|++|.++++++++.+
T Consensus 4 ~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~----~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 77 (261)
T PRK08265 4 LAGKVAIVTGGATLIGAAVARALVAAGARVAIVDIDADN----GAAVAASL--GERARFIATDITDDAAIERAVATVVAR 77 (261)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHH----HHHHHHHh--CCeeEEEEecCCCHHHHHHHHHHHHHH
Confidence 567899999999999999999999999999999995431 11111111 236889999999999998888754
Q ss_pred --CccEEEEcccccCh---hhhccChHHHHHHHHHHHHHHHHHHHhc--CCCCeEEEEcCccccCCCCCCCCCCCCCCCC
Q 012176 193 --PFTHVLHLAAQAGV---RYAMQNPQSYVASNIAGFVNLLEVCKSV--NPQPSIVWASSSSVYGLNTQVPFSESHRTDQ 265 (469)
Q Consensus 193 --~~d~Vih~Aa~~~~---~~~~~~~~~~~~~Nv~~~~~ll~aa~~~--~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~ 265 (469)
++|+||||||.... ....++.+..+++|+.++..+++++... ...++||++||...+.+. .
T Consensus 78 ~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~g~ii~isS~~~~~~~------------~ 145 (261)
T PRK08265 78 FGRVDILVNLACTYLDDGLASSRADWLAALDVNLVSAAMLAQAAHPHLARGGGAIVNFTSISAKFAQ------------T 145 (261)
T ss_pred hCCCCEEEECCCCCCCCcCcCCHHHHHHHHhHhhHHHHHHHHHHHHHHhcCCcEEEEECchhhccCC------------C
Confidence 67999999996322 2233455678999999999999876542 122489999996554221 2
Q ss_pred CCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCCCC-ChHHHHHHHHHcCCceEEEeeCCCCcceEeccc
Q 012176 266 PASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPD-MAYFFFTKDILQGKTIDVYKTQDDREVARDFTY 341 (469)
Q Consensus 266 p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~ 341 (469)
....|+.+|.+.+.+++.++.++ |+++++|+||.+..+..... .........+... ......+..
T Consensus 146 ~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~~~t~~~~~~~~~~~~~~~~~~~~-----------~~p~~r~~~ 214 (261)
T PRK08265 146 GRWLYPASKAAIRQLTRSMAMDLAPDGIRVNSVSPGWTWSRVMDELSGGDRAKADRVAAP-----------FHLLGRVGD 214 (261)
T ss_pred CCchhHHHHHHHHHHHHHHHHHhcccCEEEEEEccCCccChhhhhhcccchhHHHHhhcc-----------cCCCCCccC
Confidence 34579999999999999998764 79999999999877632110 0000001111100 001122457
Q ss_pred HHHHHHHHHHHhccCCCCCCCCCceEEEeCCCC
Q 012176 342 IDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTS 374 (469)
Q Consensus 342 v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~ 374 (469)
.+|+|++++.++..... ...|+++.+.++.
T Consensus 215 p~dva~~~~~l~s~~~~---~~tG~~i~vdgg~ 244 (261)
T PRK08265 215 PEEVAQVVAFLCSDAAS---FVTGADYAVDGGY 244 (261)
T ss_pred HHHHHHHHHHHcCcccc---CccCcEEEECCCe
Confidence 89999999999865422 3455888887764
|
|
| >PRK08643 acetoin reductase; Validated | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.3e-18 Score=167.25 Aligned_cols=226 Identities=16% Similarity=0.081 Sum_probs=154.7
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhc-cCCeEEEEecCCCHHHHHHhhccC----
Q 012176 118 GMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQ-KHQVFIVEGDLNDAPLLTKLFDVV---- 192 (469)
Q Consensus 118 ~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~v~~v~~Dl~d~~~l~~~~~~~---- 192 (469)
+|+++||||+|+||.++++.|+++|++|++++|+.+. ..+....... ..++.++.+|++|++.+.++++..
T Consensus 2 ~k~~lItGas~giG~~la~~l~~~G~~v~~~~r~~~~----~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 77 (256)
T PRK08643 2 SKVALVTGAGQGIGFAIAKRLVEDGFKVAIVDYNEET----AQAAADKLSKDGGKAIAVKADVSDRDQVFAAVRQVVDTF 77 (256)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHH----HHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 5789999999999999999999999999999985432 1122222111 246888999999999988888754
Q ss_pred -CccEEEEcccccChh----hhccChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEEcCccccCCCCCCCCCCCCCC
Q 012176 193 -PFTHVLHLAAQAGVR----YAMQNPQSYVASNIAGFVNLLEVCKS----VNPQPSIVWASSSSVYGLNTQVPFSESHRT 263 (469)
Q Consensus 193 -~~d~Vih~Aa~~~~~----~~~~~~~~~~~~Nv~~~~~ll~aa~~----~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~ 263 (469)
++|+||||||..... ...++.+..+++|+.++..+++++.. .+...+||++||...+.+.
T Consensus 78 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~----------- 146 (256)
T PRK08643 78 GDLNVVVNNAGVAPTTPIETITEEQFDKVYNINVGGVIWGIQAAQEAFKKLGHGGKIINATSQAGVVGN----------- 146 (256)
T ss_pred CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCEEEEECccccccCC-----------
Confidence 579999999874322 12334467889999998887777653 2323489999996544321
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeecceecCCCCCC---------ChHHHHHHHHHcCCceEEEeeCC
Q 012176 264 DQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPD---------MAYFFFTKDILQGKTIDVYKTQD 331 (469)
Q Consensus 264 ~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~Gp~~~~~---------~~~~~~~~~~~~g~~~~~~~~~~ 331 (469)
.....|+.+|.+.+.+++.++.+ .|++++.|+||.+.+|..... ....+.........
T Consensus 147 -~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 216 (256)
T PRK08643 147 -PELAVYSSTKFAVRGLTQTAARDLASEGITVNAYAPGIVKTPMMFDIAHQVGENAGKPDEWGMEQFAKDI--------- 216 (256)
T ss_pred -CCCchhHHHHHHHHHHHHHHHHHhcccCcEEEEEeeCCCcChhhhHHHhhhccccCCCchHHHHHHhccC---------
Confidence 23467999999999999998865 479999999999988632100 00000011111110
Q ss_pred CCcceEecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCC
Q 012176 332 DREVARDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTS 374 (469)
Q Consensus 332 ~~~~~~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~ 374 (469)
....+...+|+++++..++..... ...|.++.+.++.
T Consensus 217 ---~~~~~~~~~~va~~~~~L~~~~~~---~~~G~~i~vdgg~ 253 (256)
T PRK08643 217 ---TLGRLSEPEDVANCVSFLAGPDSD---YITGQTIIVDGGM 253 (256)
T ss_pred ---CCCCCcCHHHHHHHHHHHhCcccc---CccCcEEEeCCCe
Confidence 112356789999999888765432 3456888777654
|
|
| >PRK12743 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.5e-18 Score=167.12 Aligned_cols=226 Identities=13% Similarity=0.065 Sum_probs=157.9
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhh-ccCCeEEEEecCCCHHHHHHhhccC----
Q 012176 118 GMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLL-QKHQVFIVEGDLNDAPLLTKLFDVV---- 192 (469)
Q Consensus 118 ~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~v~~v~~Dl~d~~~l~~~~~~~---- 192 (469)
+++|+||||+|+||.++++.|+++|++|+++.+.+.. .......... ....+.++.+|++|.++++++++..
T Consensus 2 ~k~vlItGas~giG~~~a~~l~~~G~~V~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 78 (256)
T PRK12743 2 AQVAIVTASDSGIGKACALLLAQQGFDIGITWHSDEE---GAKETAEEVRSHGVRAEIRQLDLSDLPEGAQALDKLIQRL 78 (256)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCChH---HHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHc
Confidence 4689999999999999999999999999988764331 1111111111 1336889999999999988877653
Q ss_pred -CccEEEEcccccCh----hhhccChHHHHHHHHHHHHHHHHHHHhc----CCCCeEEEEcCccccCCCCCCCCCCCCCC
Q 012176 193 -PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCKSV----NPQPSIVWASSSSVYGLNTQVPFSESHRT 263 (469)
Q Consensus 193 -~~d~Vih~Aa~~~~----~~~~~~~~~~~~~Nv~~~~~ll~aa~~~----~~~~~~V~~SS~~vyg~~~~~~~~E~~~~ 263 (469)
++|+||||||.... ....++.+..+++|+.++..+++++... +..++||++||.....+
T Consensus 79 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~g~ii~isS~~~~~~------------ 146 (256)
T PRK12743 79 GRIDVLVNNAGAMTKAPFLDMDFDEWRKIFTVDVDGAFLCSQIAARHMVKQGQGGRIINITSVHEHTP------------ 146 (256)
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCeEEEEEeeccccCC------------
Confidence 57999999997432 1233455678999999999999887543 22248999999653221
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceEecc
Q 012176 264 DQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFT 340 (469)
Q Consensus 264 ~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v 340 (469)
..+...|+.+|.+.+.+++.++.++ |++++.|+||.++++...... .........+.++ ..+.
T Consensus 147 ~~~~~~Y~~sK~a~~~l~~~la~~~~~~~i~v~~v~Pg~~~t~~~~~~~--~~~~~~~~~~~~~------------~~~~ 212 (256)
T PRK12743 147 LPGASAYTAAKHALGGLTKAMALELVEHGILVNAVAPGAIATPMNGMDD--SDVKPDSRPGIPL------------GRPG 212 (256)
T ss_pred CCCcchhHHHHHHHHHHHHHHHHHhhhhCeEEEEEEeCCccCccccccC--hHHHHHHHhcCCC------------CCCC
Confidence 1345689999999999999988754 799999999999987543211 1111111111111 1245
Q ss_pred cHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCCc
Q 012176 341 YIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTSP 375 (469)
Q Consensus 341 ~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~~ 375 (469)
+.+|++++++.++..... ...|.++.+.++..
T Consensus 213 ~~~dva~~~~~l~~~~~~---~~~G~~~~~dgg~~ 244 (256)
T PRK12743 213 DTHEIASLVAWLCSEGAS---YTTGQSLIVDGGFM 244 (256)
T ss_pred CHHHHHHHHHHHhCcccc---CcCCcEEEECCCcc
Confidence 789999999888765422 34568888877653
|
|
| >PRK08264 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.3e-18 Score=165.31 Aligned_cols=165 Identities=17% Similarity=0.096 Sum_probs=131.6
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCC-cEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccC-C
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGD-GVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV-P 193 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~-~ 193 (469)
..+++|+||||+|+||+++++.|+++|+ +|++++|...... . ...++.++.+|+.|.+.++++++.. +
T Consensus 4 ~~~~~vlItGgsg~iG~~la~~l~~~G~~~V~~~~r~~~~~~-------~---~~~~~~~~~~D~~~~~~~~~~~~~~~~ 73 (238)
T PRK08264 4 IKGKVVLVTGANRGIGRAFVEQLLARGAAKVYAAARDPESVT-------D---LGPRVVPLQLDVTDPASVAAAAEAASD 73 (238)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCcccEEEEecChhhhh-------h---cCCceEEEEecCCCHHHHHHHHHhcCC
Confidence 4668999999999999999999999999 9999998543111 1 2347899999999999999988865 4
Q ss_pred ccEEEEcccc-cCh----hhhccChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEEcCccccCCCCCCCCCCCCCCC
Q 012176 194 FTHVLHLAAQ-AGV----RYAMQNPQSYVASNIAGFVNLLEVCKS----VNPQPSIVWASSSSVYGLNTQVPFSESHRTD 264 (469)
Q Consensus 194 ~d~Vih~Aa~-~~~----~~~~~~~~~~~~~Nv~~~~~ll~aa~~----~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~ 264 (469)
+|+|||+||. ... ....++....+++|+.++..+++++.. .+. ++||++||...+.+.
T Consensus 74 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~-~~~v~~sS~~~~~~~------------ 140 (238)
T PRK08264 74 VTILVNNAGIFRTGSLLLEGDEDALRAEMETNYFGPLAMARAFAPVLAANGG-GAIVNVLSVLSWVNF------------ 140 (238)
T ss_pred CCEEEECCCcCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCC-CEEEEEcChhhccCC------------
Confidence 7999999997 221 122345567889999999999998653 444 389999997766432
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecC
Q 012176 265 QPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGP 303 (469)
Q Consensus 265 ~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp 303 (469)
.+...|+.+|.+.|.+++.++.+. +++++++|||.+.++
T Consensus 141 ~~~~~y~~sK~a~~~~~~~l~~~~~~~~i~~~~v~pg~v~t~ 182 (238)
T PRK08264 141 PNLGTYSASKAAAWSLTQALRAELAPQGTRVLGVHPGPIDTD 182 (238)
T ss_pred CCchHhHHHHHHHHHHHHHHHHHhhhcCeEEEEEeCCccccc
Confidence 345789999999999999988764 899999999999776
|
|
| >PRK07326 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=2e-18 Score=163.93 Aligned_cols=216 Identities=14% Similarity=0.107 Sum_probs=154.7
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccC---
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~--- 192 (469)
..+++|+||||+|+||.+++++|+++|++|++++|+.. ...+.........+++++.+|++|.+++.++++..
T Consensus 4 ~~~~~ilItGatg~iG~~la~~l~~~g~~V~~~~r~~~----~~~~~~~~l~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 79 (237)
T PRK07326 4 LKGKVALITGGSKGIGFAIAEALLAEGYKVAITARDQK----ELEEAAAELNNKGNVLGLAADVRDEADVQRAVDAIVAA 79 (237)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHHCCCEEEEeeCCHH----HHHHHHHHHhccCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 45689999999999999999999999999999998542 11122222222257899999999999998888743
Q ss_pred --CccEEEEcccccChh----hhccChHHHHHHHHHHHHHHHHHHHhc---CCCCeEEEEcCccccCCCCCCCCCCCCCC
Q 012176 193 --PFTHVLHLAAQAGVR----YAMQNPQSYVASNIAGFVNLLEVCKSV---NPQPSIVWASSSSVYGLNTQVPFSESHRT 263 (469)
Q Consensus 193 --~~d~Vih~Aa~~~~~----~~~~~~~~~~~~Nv~~~~~ll~aa~~~---~~~~~~V~~SS~~vyg~~~~~~~~E~~~~ 263 (469)
++|+|||++|..... ...++.+..+++|+.++..+++++... +. +++|++||...+.+.
T Consensus 80 ~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~~iv~~ss~~~~~~~----------- 147 (237)
T PRK07326 80 FGGLDVLIANAGVGHFAPVEELTPEEWRLVIDTNLTGAFYTIKAAVPALKRGG-GYIINISSLAGTNFF----------- 147 (237)
T ss_pred cCCCCEEEECCCCCCCCchhhCCHHHHHHHHhhccHHHHHHHHHHHHHHHHCC-eEEEEECChhhccCC-----------
Confidence 579999999874332 123344578999999999999887643 33 389999997654321
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceEecc
Q 012176 264 DQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFT 340 (469)
Q Consensus 264 ~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v 340 (469)
.+...|+.+|++.+.+++.+..+ .|++++++|||.+.++....... . .. ...+
T Consensus 148 -~~~~~y~~sk~a~~~~~~~~~~~~~~~gi~v~~v~pg~~~t~~~~~~~~-----------~----------~~--~~~~ 203 (237)
T PRK07326 148 -AGGAAYNASKFGLVGFSEAAMLDLRQYGIKVSTIMPGSVATHFNGHTPS-----------E----------KD--AWKI 203 (237)
T ss_pred -CCCchHHHHHHHHHHHHHHHHHHhcccCcEEEEEeeccccCcccccccc-----------h----------hh--hccC
Confidence 33567999999999998888644 48999999999997764321100 0 00 0136
Q ss_pred cHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCCc
Q 012176 341 YIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTSP 375 (469)
Q Consensus 341 ~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~~ 375 (469)
..+|+++.++.++..+.. .....+.+.++.+
T Consensus 204 ~~~d~a~~~~~~l~~~~~----~~~~~~~~~~~~~ 234 (237)
T PRK07326 204 QPEDIAQLVLDLLKMPPR----TLPSKIEVRPSRP 234 (237)
T ss_pred CHHHHHHHHHHHHhCCcc----ccccceEEecCCC
Confidence 789999999999987742 2335555655544
|
|
| >PRK09730 putative NAD(P)-binding oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.3e-18 Score=166.06 Aligned_cols=224 Identities=15% Similarity=0.113 Sum_probs=152.2
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCCcEEEEe-CCCCCCChhHHHHHHHhhc-cCCeEEEEecCCCHHHHHHhhccC----
Q 012176 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLD-NFNSYYDPSLKRARQKLLQ-KHQVFIVEGDLNDAPLLTKLFDVV---- 192 (469)
Q Consensus 119 ~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~-r~~~~~~~~~~~~~~~~~~-~~~v~~v~~Dl~d~~~l~~~~~~~---- 192 (469)
++|+||||+|+||.+++++|+++|++|+++. |+.+ ........... ..++.++.+|++|+++++++++.+
T Consensus 2 ~~~lItGa~g~iG~~l~~~l~~~g~~v~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~D~~d~~~i~~~~~~~~~~~ 77 (247)
T PRK09730 2 AIALVTGGSRGIGRATALLLAQEGYTVAVNYQQNLH----AAQEVVNLITQAGGKAFVLQADISDENQVVAMFTAIDQHD 77 (247)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCChH----HHHHHHHHHHhCCCeEEEEEccCCCHHHHHHHHHHHHHhC
Confidence 5799999999999999999999999998754 4221 11111111111 235888999999999999888754
Q ss_pred -CccEEEEcccccChh-----hhccChHHHHHHHHHHHHHHHHHHHhc------CCCCeEEEEcCccccCCCCCCCCCCC
Q 012176 193 -PFTHVLHLAAQAGVR-----YAMQNPQSYVASNIAGFVNLLEVCKSV------NPQPSIVWASSSSVYGLNTQVPFSES 260 (469)
Q Consensus 193 -~~d~Vih~Aa~~~~~-----~~~~~~~~~~~~Nv~~~~~ll~aa~~~------~~~~~~V~~SS~~vyg~~~~~~~~E~ 260 (469)
++|+|||+||..... ...++.+..+++|+.++..+++++... +...+||++||...+.+..
T Consensus 78 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~g~~v~~sS~~~~~~~~------- 150 (247)
T PRK09730 78 EPLAALVNNAGILFTQCTVENLTAERINRVLSTNVTGYFLCCREAVKRMALKHGGSGGAIVNVSSAASRLGAP------- 150 (247)
T ss_pred CCCCEEEECCCCCCCCCccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCCCcEEEEECchhhccCCC-------
Confidence 579999999964221 122334578999999998888765432 1123799999975543221
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceE
Q 012176 261 HRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVAR 337 (469)
Q Consensus 261 ~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 337 (469)
.....|+.+|...|.+++.++.++ +++++++|||.+|+|....... +.+...+....++.
T Consensus 151 ----~~~~~Y~~sK~~~~~~~~~l~~~~~~~~i~v~~i~pg~~~~~~~~~~~~-~~~~~~~~~~~~~~------------ 213 (247)
T PRK09730 151 ----GEYVDYAASKGAIDTLTTGLSLEVAAQGIRVNCVRPGFIYTEMHASGGE-PGRVDRVKSNIPMQ------------ 213 (247)
T ss_pred ----CcccchHhHHHHHHHHHHHHHHHHHHhCeEEEEEEeCCCcCcccccCCC-HHHHHHHHhcCCCC------------
Confidence 112459999999999999887654 8999999999999985432211 22233333332221
Q ss_pred ecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCC
Q 012176 338 DFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNT 373 (469)
Q Consensus 338 ~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~ 373 (469)
...+++|++++++.++..... ...|.+|++.++
T Consensus 214 ~~~~~~dva~~~~~~~~~~~~---~~~g~~~~~~g~ 246 (247)
T PRK09730 214 RGGQPEEVAQAIVWLLSDKAS---YVTGSFIDLAGG 246 (247)
T ss_pred CCcCHHHHHHHHHhhcChhhc---CccCcEEecCCC
Confidence 123689999999988865422 244577777664
|
|
| >PRK07035 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.8e-18 Score=166.04 Aligned_cols=226 Identities=15% Similarity=0.112 Sum_probs=157.4
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhc-cCCeEEEEecCCCHHHHHHhhccC--
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQ-KHQVFIVEGDLNDAPLLTKLFDVV-- 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~v~~v~~Dl~d~~~l~~~~~~~-- 192 (469)
.++++|+||||+|+||.+++++|+++|++|++++|+.. ........... ...+..+.+|+.|.++++++++.+
T Consensus 6 l~~k~vlItGas~gIG~~l~~~l~~~G~~Vi~~~r~~~----~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 81 (252)
T PRK07035 6 LTGKIALVTGASRGIGEAIAKLLAQQGAHVIVSSRKLD----GCQAVADAIVAAGGKAEALACHIGEMEQIDALFAHIRE 81 (252)
T ss_pred cCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHH----HHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHH
Confidence 56789999999999999999999999999999998543 12222222211 235778999999999988877653
Q ss_pred ---CccEEEEcccccCh-----hhhccChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEEcCccccCCCCCCCCCCC
Q 012176 193 ---PFTHVLHLAAQAGV-----RYAMQNPQSYVASNIAGFVNLLEVCK----SVNPQPSIVWASSSSVYGLNTQVPFSES 260 (469)
Q Consensus 193 ---~~d~Vih~Aa~~~~-----~~~~~~~~~~~~~Nv~~~~~ll~aa~----~~~~~~~~V~~SS~~vyg~~~~~~~~E~ 260 (469)
++|+|||+||.... ....++.+..+++|+.++..+++++. +.+.. ++|++||...+.+.
T Consensus 82 ~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~-~iv~~sS~~~~~~~-------- 152 (252)
T PRK07035 82 RHGRLDILVNNAAANPYFGHILDTDLGAFQKTVDVNIRGYFFMSVEAGKLMKEQGGG-SIVNVASVNGVSPG-------- 152 (252)
T ss_pred HcCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCc-EEEEECchhhcCCC--------
Confidence 57999999985321 12233455789999999998887763 33433 89999996544321
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceE
Q 012176 261 HRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVAR 337 (469)
Q Consensus 261 ~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 337 (469)
.+.+.|+.+|.+.|.+++.++.++ |++++.|+||.|..+.......-..+........+. .
T Consensus 153 ----~~~~~Y~~sK~al~~~~~~l~~e~~~~gi~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~------------~ 216 (252)
T PRK07035 153 ----DFQGIYSITKAAVISMTKAFAKECAPFGIRVNALLPGLTDTKFASALFKNDAILKQALAHIPL------------R 216 (252)
T ss_pred ----CCCcchHHHHHHHHHHHHHHHHHHhhcCEEEEEEeeccccCcccccccCCHHHHHHHHccCCC------------C
Confidence 345679999999999999998764 799999999998765322111001222222222221 2
Q ss_pred ecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCC
Q 012176 338 DFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNT 373 (469)
Q Consensus 338 ~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~ 373 (469)
.+..++|+|++++.++.+... ...|+++++.++
T Consensus 217 ~~~~~~~va~~~~~l~~~~~~---~~~g~~~~~dgg 249 (252)
T PRK07035 217 RHAEPSEMAGAVLYLASDASS---YTTGECLNVDGG 249 (252)
T ss_pred CcCCHHHHHHHHHHHhCcccc---CccCCEEEeCCC
Confidence 245689999999998876532 234578877664
|
|
| >PRK07454 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=8.8e-19 Score=166.96 Aligned_cols=204 Identities=13% Similarity=0.046 Sum_probs=149.0
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhh-ccCCeEEEEecCCCHHHHHHhhccC--
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLL-QKHQVFIVEGDLNDAPLLTKLFDVV-- 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~v~~v~~Dl~d~~~l~~~~~~~-- 192 (469)
.++|+++||||+|+||.+++++|+++|++|++++|+... ......... ...++.++.+|++|.+++.++++.+
T Consensus 4 ~~~k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~----~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 79 (241)
T PRK07454 4 NSMPRALITGASSGIGKATALAFAKAGWDLALVARSQDA----LEALAAELRSTGVKAAAYSIDLSNPEAIAPGIAELLE 79 (241)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHH----HHHHHHHHHhCCCcEEEEEccCCCHHHHHHHHHHHHH
Confidence 356799999999999999999999999999999995431 111111111 1247889999999999988887752
Q ss_pred ---CccEEEEcccccChh----hhccChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEEcCccccCCCCCCCCCCCC
Q 012176 193 ---PFTHVLHLAAQAGVR----YAMQNPQSYVASNIAGFVNLLEVCK----SVNPQPSIVWASSSSVYGLNTQVPFSESH 261 (469)
Q Consensus 193 ---~~d~Vih~Aa~~~~~----~~~~~~~~~~~~Nv~~~~~ll~aa~----~~~~~~~~V~~SS~~vyg~~~~~~~~E~~ 261 (469)
++|+|||+||..... ...++.+..+++|+.++.++++++. +.+. ++||++||...+++.
T Consensus 80 ~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~-~~iv~isS~~~~~~~--------- 149 (241)
T PRK07454 80 QFGCPDVLINNAGMAYTGPLLEMPLSDWQWVIQLNLTSVFQCCSAVLPGMRARGG-GLIINVSSIAARNAF--------- 149 (241)
T ss_pred HcCCCCEEEECCCccCCCchhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcCC-cEEEEEccHHhCcCC---------
Confidence 579999999974322 1234456788999999988887753 3333 489999998877532
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceEe
Q 012176 262 RTDQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARD 338 (469)
Q Consensus 262 ~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 338 (469)
.+...|+.+|.+.+.+++.++.+ .|+++++||||.+-.+....... .. ......
T Consensus 150 ---~~~~~Y~~sK~~~~~~~~~~a~e~~~~gi~v~~i~pg~i~t~~~~~~~~-------------~~-------~~~~~~ 206 (241)
T PRK07454 150 ---PQWGAYCVSKAALAAFTKCLAEEERSHGIRVCTITLGAVNTPLWDTETV-------------QA-------DFDRSA 206 (241)
T ss_pred ---CCccHHHHHHHHHHHHHHHHHHHhhhhCCEEEEEecCcccCCccccccc-------------cc-------cccccc
Confidence 34567999999999999888754 48999999999998764221100 00 000123
Q ss_pred cccHHHHHHHHHHHhccC
Q 012176 339 FTYIDDVVKGCVGATGSG 356 (469)
Q Consensus 339 ~v~v~Dva~~~~~~~~~~ 356 (469)
.+..+|+|++++.++.++
T Consensus 207 ~~~~~~va~~~~~l~~~~ 224 (241)
T PRK07454 207 MLSPEQVAQTILHLAQLP 224 (241)
T ss_pred CCCHHHHHHHHHHHHcCC
Confidence 578999999999998876
|
|
| >PRK07024 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=9.5e-19 Score=168.54 Aligned_cols=198 Identities=15% Similarity=0.104 Sum_probs=144.4
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccC-----
Q 012176 118 GMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV----- 192 (469)
Q Consensus 118 ~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~----- 192 (469)
+|+|+||||+|+||.++++.|+++|++|++++|+.+ .............++.++.+|++|++++.++++..
T Consensus 2 ~~~vlItGas~gIG~~la~~l~~~G~~v~~~~r~~~----~~~~~~~~~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~~g 77 (257)
T PRK07024 2 PLKVFITGASSGIGQALAREYARQGATLGLVARRTD----ALQAFAARLPKAARVSVYAADVRDADALAAAAADFIAAHG 77 (257)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHH----HHHHHHHhcccCCeeEEEEcCCCCHHHHHHHHHHHHHhCC
Confidence 478999999999999999999999999999998542 12221111111126889999999999998887653
Q ss_pred CccEEEEcccccChh-----hhccChHHHHHHHHHHHHHHHHH----HHhcCCCCeEEEEcCccccCCCCCCCCCCCCCC
Q 012176 193 PFTHVLHLAAQAGVR-----YAMQNPQSYVASNIAGFVNLLEV----CKSVNPQPSIVWASSSSVYGLNTQVPFSESHRT 263 (469)
Q Consensus 193 ~~d~Vih~Aa~~~~~-----~~~~~~~~~~~~Nv~~~~~ll~a----a~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~ 263 (469)
.+|+||||||..... ...++.+..+++|+.++..++++ +++.+.. +||++||...+.+.
T Consensus 78 ~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~l~~~~~~~~~-~iv~isS~~~~~~~----------- 145 (257)
T PRK07024 78 LPDVVIANAGISVGTLTEEREDLAVFREVMDTNYFGMVATFQPFIAPMRAARRG-TLVGIASVAGVRGL----------- 145 (257)
T ss_pred CCCEEEECCCcCCCccccccCCHHHHHHHHhHhcHHHHHHHHHHHHHHHhcCCC-EEEEEechhhcCCC-----------
Confidence 479999999974321 12244567899999999998774 4455544 89999996544221
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceEecc
Q 012176 264 DQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFT 340 (469)
Q Consensus 264 ~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v 340 (469)
.....|+.+|.+.+.+++.++.+ +|++++++|||.|.++..... .... ...+
T Consensus 146 -~~~~~Y~asK~a~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~~~~~------------~~~~------------~~~~ 200 (257)
T PRK07024 146 -PGAGAYSASKAAAIKYLESLRVELRPAGVRVVTIAPGYIRTPMTAHN------------PYPM------------PFLM 200 (257)
T ss_pred -CCCcchHHHHHHHHHHHHHHHHHhhccCcEEEEEecCCCcCchhhcC------------CCCC------------CCcc
Confidence 23457999999999999888744 489999999999988732210 0000 0135
Q ss_pred cHHHHHHHHHHHhccC
Q 012176 341 YIDDVVKGCVGATGSG 356 (469)
Q Consensus 341 ~v~Dva~~~~~~~~~~ 356 (469)
..+|+++.++.++.+.
T Consensus 201 ~~~~~a~~~~~~l~~~ 216 (257)
T PRK07024 201 DADRFAARAARAIARG 216 (257)
T ss_pred CHHHHHHHHHHHHhCC
Confidence 6899999999999765
|
|
| >PRK06198 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.9e-18 Score=166.46 Aligned_cols=228 Identities=14% Similarity=0.069 Sum_probs=161.6
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCc-EEEEeCCCCCCChhHHHHHHHhh-ccCCeEEEEecCCCHHHHHHhhccC-
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDG-VLGLDNFNSYYDPSLKRARQKLL-QKHQVFIVEGDLNDAPLLTKLFDVV- 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~-~~~~v~~v~~Dl~d~~~l~~~~~~~- 192 (469)
.++|+|+||||+|+||.++++.|+++|++ |++++|.... ......... ....+.++.+|++|++++.++++..
T Consensus 4 ~~~k~vlItGa~g~iG~~la~~l~~~G~~~V~~~~r~~~~----~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 79 (260)
T PRK06198 4 LDGKVALVTGGTQGLGAAIARAFAERGAAGLVICGRNAEK----GEAQAAELEALGAKAVFVQADLSDVEDCRRVVAAAD 79 (260)
T ss_pred CCCcEEEEeCCCchHHHHHHHHHHHCCCCeEEEEcCCHHH----HHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHH
Confidence 56789999999999999999999999999 9999985431 111111111 1235778999999999998888754
Q ss_pred ----CccEEEEcccccCh----hhhccChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEEcCccccCCCCCCCCCCC
Q 012176 193 ----PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCKS----VNPQPSIVWASSSSVYGLNTQVPFSES 260 (469)
Q Consensus 193 ----~~d~Vih~Aa~~~~----~~~~~~~~~~~~~Nv~~~~~ll~aa~~----~~~~~~~V~~SS~~vyg~~~~~~~~E~ 260 (469)
++|+|||++|.... +...+..+..+++|+.++.++++++.. .+..+++|++||...++..
T Consensus 80 ~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv~~ss~~~~~~~-------- 151 (260)
T PRK06198 80 EAFGRLDALVNAAGLTDRGTILDTSPELFDRHFAVNVRAPFFLMQEAIKLMRRRKAEGTIVNIGSMSAHGGQ-------- 151 (260)
T ss_pred HHhCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCEEEEECCcccccCC--------
Confidence 57999999997432 122334456799999999999988743 2223489999998877533
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCCC--C---ChHHHHHHHHHcCCceEEEeeCCC
Q 012176 261 HRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRP--D---MAYFFFTKDILQGKTIDVYKTQDD 332 (469)
Q Consensus 261 ~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~~--~---~~~~~~~~~~~~g~~~~~~~~~~~ 332 (469)
.....|+.+|.+.|.+++.++.++ +++++.++||+++++.... . .....+........
T Consensus 152 ----~~~~~Y~~sK~a~~~~~~~~a~e~~~~~i~v~~i~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~---------- 217 (260)
T PRK06198 152 ----PFLAAYCASKGALATLTRNAAYALLRNRIRVNGLNIGWMATEGEDRIQREFHGAPDDWLEKAAATQ---------- 217 (260)
T ss_pred ----CCcchhHHHHHHHHHHHHHHHHHhcccCeEEEEEeeccccCcchhhhhhhccCCChHHHHHHhccC----------
Confidence 234679999999999999988765 6999999999999875321 0 00011222221111
Q ss_pred CcceEecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCC
Q 012176 333 REVARDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTS 374 (469)
Q Consensus 333 ~~~~~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~ 374 (469)
....+++++|++++++.++..... ...|+++++.++.
T Consensus 218 --~~~~~~~~~~~a~~~~~l~~~~~~---~~~G~~~~~~~~~ 254 (260)
T PRK06198 218 --PFGRLLDPDEVARAVAFLLSDESG---LMTGSVIDFDQSV 254 (260)
T ss_pred --CccCCcCHHHHHHHHHHHcChhhC---CccCceEeECCcc
Confidence 123467899999999998865432 3456888887754
|
|
| >PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.1e-18 Score=165.06 Aligned_cols=226 Identities=14% Similarity=0.132 Sum_probs=158.3
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhh-ccCCeEEEEecCCCHHHHHHhhccC--
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLL-QKHQVFIVEGDLNDAPLLTKLFDVV-- 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~v~~v~~Dl~d~~~l~~~~~~~-- 192 (469)
..+++||||||+|+||.++++.|+++|++|++++|+ . .......... ....+.++.+|++|.++++++++.+
T Consensus 13 l~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~ 87 (258)
T PRK06935 13 LDGKVAIVTGGNTGLGQGYAVALAKAGADIIITTHG-T----NWDETRRLIEKEGRKVTFVQVDLTKPESAEKVVKEALE 87 (258)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCC-c----HHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHH
Confidence 567999999999999999999999999999999985 2 1111111111 1236889999999999998888754
Q ss_pred ---CccEEEEcccccCh----hhhccChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEEcCccccCCCCCCCCCCCC
Q 012176 193 ---PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCK----SVNPQPSIVWASSSSVYGLNTQVPFSESH 261 (469)
Q Consensus 193 ---~~d~Vih~Aa~~~~----~~~~~~~~~~~~~Nv~~~~~ll~aa~----~~~~~~~~V~~SS~~vyg~~~~~~~~E~~ 261 (469)
++|++|||||.... ....++.+..+++|+.++..+++++. +.+. +++|++||...+.+.
T Consensus 88 ~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~-g~iv~isS~~~~~~~--------- 157 (258)
T PRK06935 88 EFGKIDILVNNAGTIRRAPLLEYKDEDWNAVMDINLNSVYHLSQAVAKVMAKQGS-GKIINIASMLSFQGG--------- 157 (258)
T ss_pred HcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhCHHHHHHHHHHHHHHHhcCC-eEEEEECCHHhccCC---------
Confidence 57999999997432 12234556789999999888887654 3343 389999998766432
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceEe
Q 012176 262 RTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARD 338 (469)
Q Consensus 262 ~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 338 (469)
.....|+.+|.+.|.+++.+++++ |+++++|+||.|..+..............+....+ ...
T Consensus 158 ---~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~------------~~~ 222 (258)
T PRK06935 158 ---KFVPAYTASKHGVAGLTKAFANELAAYNIQVNAIAPGYIKTANTAPIRADKNRNDEILKRIP------------AGR 222 (258)
T ss_pred ---CCchhhHHHHHHHHHHHHHHHHHhhhhCeEEEEEEeccccccchhhcccChHHHHHHHhcCC------------CCC
Confidence 234579999999999999998764 79999999999987643211000111112211111 123
Q ss_pred cccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCC
Q 012176 339 FTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTS 374 (469)
Q Consensus 339 ~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~ 374 (469)
+...+|++..+..++..... -..|.++.+.++.
T Consensus 223 ~~~~~dva~~~~~l~s~~~~---~~~G~~i~~dgg~ 255 (258)
T PRK06935 223 WGEPDDLMGAAVFLASRASD---YVNGHILAVDGGW 255 (258)
T ss_pred CCCHHHHHHHHHHHcChhhc---CCCCCEEEECCCe
Confidence 66789999999888764422 2455788777653
|
|
| >PRK12742 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=4e-18 Score=161.85 Aligned_cols=222 Identities=13% Similarity=0.047 Sum_probs=153.8
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccC-Cc
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV-PF 194 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~-~~ 194 (469)
.++|+|+||||+|+||+++++.|+++|++|+++.+... +... ......++.++.+|++|.+.+.++++.. ++
T Consensus 4 ~~~k~vlItGasggIG~~~a~~l~~~G~~v~~~~~~~~---~~~~----~l~~~~~~~~~~~D~~~~~~~~~~~~~~~~i 76 (237)
T PRK12742 4 FTGKKVLVLGGSRGIGAAIVRRFVTDGANVRFTYAGSK---DAAE----RLAQETGATAVQTDSADRDAVIDVVRKSGAL 76 (237)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEecCCCH---HHHH----HHHHHhCCeEEecCCCCHHHHHHHHHHhCCC
Confidence 56789999999999999999999999999988766322 1111 1111225678899999999988888653 47
Q ss_pred cEEEEcccccCh----hhhccChHHHHHHHHHHHHHHHHHHHhc-CCCCeEEEEcCccccCCCCCCCCCCCCCCCCCCCh
Q 012176 195 THVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCKSV-NPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASL 269 (469)
Q Consensus 195 d~Vih~Aa~~~~----~~~~~~~~~~~~~Nv~~~~~ll~aa~~~-~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~ 269 (469)
|+||||||.... ....++.+..+++|+.++..++..+... ...+++|++||...... +..+...
T Consensus 77 d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS~~~~~~-----------~~~~~~~ 145 (237)
T PRK12742 77 DILVVNAGIAVFGDALELDADDIDRLFKINIHAPYHASVEAARQMPEGGRIIIIGSVNGDRM-----------PVAGMAA 145 (237)
T ss_pred cEEEECCCCCCCCCcccCCHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCeEEEEeccccccC-----------CCCCCcc
Confidence 999999987432 2233456789999999999998765543 22348999999653210 1134567
Q ss_pred HHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceEecccHHHHH
Q 012176 270 YAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVV 346 (469)
Q Consensus 270 Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva 346 (469)
|+.+|.+.|.+++.++.++ |+++++|+||.+..+....... ....+....++ ..+...+|++
T Consensus 146 Y~~sKaa~~~~~~~la~~~~~~gi~v~~v~Pg~~~t~~~~~~~~---~~~~~~~~~~~------------~~~~~p~~~a 210 (237)
T PRK12742 146 YAASKSALQGMARGLARDFGPRGITINVVQPGPIDTDANPANGP---MKDMMHSFMAI------------KRHGRPEEVA 210 (237)
T ss_pred hHHhHHHHHHHHHHHHHHHhhhCeEEEEEecCcccCCccccccH---HHHHHHhcCCC------------CCCCCHHHHH
Confidence 9999999999999888653 7999999999998764332111 11112111111 1246789999
Q ss_pred HHHHHHhccCCCCCCCCCceEEEeCCC
Q 012176 347 KGCVGATGSGGKKRGPAQLRVYNLGNT 373 (469)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~iyni~~~ 373 (469)
+++..++..... ...|.++.+.++
T Consensus 211 ~~~~~l~s~~~~---~~~G~~~~~dgg 234 (237)
T PRK12742 211 GMVAWLAGPEAS---FVTGAMHTIDGA 234 (237)
T ss_pred HHHHHHcCcccC---cccCCEEEeCCC
Confidence 999988765432 234577777654
|
|
| >PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.3e-18 Score=165.58 Aligned_cols=203 Identities=18% Similarity=0.120 Sum_probs=148.8
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhh-ccCCeEEEEecCCCHHHHHHhhccC--
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLL-QKHQVFIVEGDLNDAPLLTKLFDVV-- 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~v~~v~~Dl~d~~~l~~~~~~~-- 192 (469)
.++++|+||||+|+||.+++++|+++|++|++++|+.... ........ ...++.++.+|++|++++.++++..
T Consensus 5 ~~~~~vlVtG~sg~iG~~l~~~L~~~G~~Vi~~~r~~~~~----~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 80 (239)
T PRK07666 5 LQGKNALITGAGRGIGRAVAIALAKEGVNVGLLARTEENL----KAVAEEVEAYGVKVVIATADVSDYEEVTAAIEQLKN 80 (239)
T ss_pred CCCCEEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCHHHH----HHHHHHHHHhCCeEEEEECCCCCHHHHHHHHHHHHH
Confidence 4568999999999999999999999999999999964321 11111111 1336889999999999998888743
Q ss_pred ---CccEEEEcccccChh----hhccChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEEcCccccCCCCCCCCCCCC
Q 012176 193 ---PFTHVLHLAAQAGVR----YAMQNPQSYVASNIAGFVNLLEVCKS----VNPQPSIVWASSSSVYGLNTQVPFSESH 261 (469)
Q Consensus 193 ---~~d~Vih~Aa~~~~~----~~~~~~~~~~~~Nv~~~~~ll~aa~~----~~~~~~~V~~SS~~vyg~~~~~~~~E~~ 261 (469)
++|+|||++|..... ...++.+..+++|+.++.++++++.. .+.. ++|++||...+.+.
T Consensus 81 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~-~iv~~ss~~~~~~~--------- 150 (239)
T PRK07666 81 ELGSIDILINNAGISKFGKFLELDPAEWEKIIQVNLMGVYYATRAVLPSMIERQSG-DIINISSTAGQKGA--------- 150 (239)
T ss_pred HcCCccEEEEcCccccCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCc-EEEEEcchhhccCC---------
Confidence 569999999874322 12334567899999999999888753 3333 89999997655322
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceEe
Q 012176 262 RTDQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARD 338 (469)
Q Consensus 262 ~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 338 (469)
.+...|+.+|.+.+.+++.++.+ .|++++++|||.+.++..... ..+. ++. ..
T Consensus 151 ---~~~~~Y~~sK~a~~~~~~~~a~e~~~~gi~v~~v~pg~v~t~~~~~~------------~~~~------~~~---~~ 206 (239)
T PRK07666 151 ---AVTSAYSASKFGVLGLTESLMQEVRKHNIRVTALTPSTVATDMAVDL------------GLTD------GNP---DK 206 (239)
T ss_pred ---CCCcchHHHHHHHHHHHHHHHHHhhccCcEEEEEecCcccCcchhhc------------cccc------cCC---CC
Confidence 23467999999999999888755 489999999999988743211 0000 001 23
Q ss_pred cccHHHHHHHHHHHhccC
Q 012176 339 FTYIDDVVKGCVGATGSG 356 (469)
Q Consensus 339 ~v~v~Dva~~~~~~~~~~ 356 (469)
++..+|+|+.++.++.++
T Consensus 207 ~~~~~~~a~~~~~~l~~~ 224 (239)
T PRK07666 207 VMQPEDLAEFIVAQLKLN 224 (239)
T ss_pred CCCHHHHHHHHHHHHhCC
Confidence 577899999999999876
|
|
| >PRK07577 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.5e-18 Score=161.89 Aligned_cols=215 Identities=18% Similarity=0.130 Sum_probs=153.4
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccC----
Q 012176 117 NGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV---- 192 (469)
Q Consensus 117 ~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~---- 192 (469)
.+|+|+||||+|+||.+++++|+++|++|++++|..... ....++.+|++|.++++++++..
T Consensus 2 ~~k~vlItG~s~~iG~~ia~~l~~~G~~v~~~~r~~~~~--------------~~~~~~~~D~~~~~~~~~~~~~~~~~~ 67 (234)
T PRK07577 2 SSRTVLVTGATKGIGLALSLRLANLGHQVIGIARSAIDD--------------FPGELFACDLADIEQTAATLAQINEIH 67 (234)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCCcccc--------------cCceEEEeeCCCHHHHHHHHHHHHHhC
Confidence 457899999999999999999999999999999965420 12257899999999887777632
Q ss_pred CccEEEEcccccChhh----hccChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEEcCccccCCCCCCCCCCCCCCC
Q 012176 193 PFTHVLHLAAQAGVRY----AMQNPQSYVASNIAGFVNLLEVC----KSVNPQPSIVWASSSSVYGLNTQVPFSESHRTD 264 (469)
Q Consensus 193 ~~d~Vih~Aa~~~~~~----~~~~~~~~~~~Nv~~~~~ll~aa----~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~ 264 (469)
++|+||||||...... ..++.+..++.|+.++..+++++ ++.+.. +||++||.++|+.
T Consensus 68 ~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~-~iv~~sS~~~~~~------------- 133 (234)
T PRK07577 68 PVDAIVNNVGIALPQPLGKIDLAALQDVYDLNVRAAVQVTQAFLEGMKLREQG-RIVNICSRAIFGA------------- 133 (234)
T ss_pred CCcEEEECCCCCCCCChHHCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCc-EEEEEccccccCC-------------
Confidence 5799999999754321 23445568899999988887665 345554 9999999877642
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCCCCC-hHHHHHHHHHcCCceEEEeeCCCCcceEecc
Q 012176 265 QPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDM-AYFFFTKDILQGKTIDVYKTQDDREVARDFT 340 (469)
Q Consensus 265 ~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v 340 (469)
.....|+.+|.+.|.+++.++.++ |++++++|||.+..+...... ........+....++ ....
T Consensus 134 ~~~~~Y~~sK~a~~~~~~~~a~e~~~~gi~v~~i~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~------------~~~~ 201 (234)
T PRK07577 134 LDRTSYSAAKSALVGCTRTWALELAEYGITVNAVAPGPIETELFRQTRPVGSEEEKRVLASIPM------------RRLG 201 (234)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHhhCcEEEEEecCcccCcccccccccchhHHHHHhhcCCC------------CCCc
Confidence 234679999999999999887653 899999999999887432110 001111222222111 1234
Q ss_pred cHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCC
Q 012176 341 YIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTS 374 (469)
Q Consensus 341 ~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~ 374 (469)
..+|+|.+++.++..+.. ...|+++++.++.
T Consensus 202 ~~~~~a~~~~~l~~~~~~---~~~g~~~~~~g~~ 232 (234)
T PRK07577 202 TPEEVAAAIAFLLSDDAG---FITGQVLGVDGGG 232 (234)
T ss_pred CHHHHHHHHHHHhCcccC---CccceEEEecCCc
Confidence 689999999999876532 2345888887654
|
|
| >PRK07063 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=3e-18 Score=165.23 Aligned_cols=228 Identities=15% Similarity=0.098 Sum_probs=159.0
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhh---ccCCeEEEEecCCCHHHHHHhhccC
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLL---QKHQVFIVEGDLNDAPLLTKLFDVV 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~---~~~~v~~v~~Dl~d~~~l~~~~~~~ 192 (469)
.++|+|+||||+|+||.++++.|+++|++|++++|+.+. ......... ....+.++.+|++|+++++++++..
T Consensus 5 l~~k~vlVtGas~gIG~~~a~~l~~~G~~vv~~~r~~~~----~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~ 80 (260)
T PRK07063 5 LAGKVALVTGAAQGIGAAIARAFAREGAAVALADLDAAL----AERAAAAIARDVAGARVLAVPADVTDAASVAAAVAAA 80 (260)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHH----HHHHHHHHHhccCCceEEEEEccCCCHHHHHHHHHHH
Confidence 567899999999999999999999999999999985432 222222221 1336889999999999998888753
Q ss_pred -----CccEEEEcccccCh----hhhccChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEEcCccccCCCCCCCCCC
Q 012176 193 -----PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCKS----VNPQPSIVWASSSSVYGLNTQVPFSE 259 (469)
Q Consensus 193 -----~~d~Vih~Aa~~~~----~~~~~~~~~~~~~Nv~~~~~ll~aa~~----~~~~~~~V~~SS~~vyg~~~~~~~~E 259 (469)
++|+||||||.... ....++.+..+++|+.++..+++++.. .+. ++||++||...+...
T Consensus 81 ~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~-g~iv~isS~~~~~~~------- 152 (260)
T PRK07063 81 EEAFGPLDVLVNNAGINVFADPLAMTDEDWRRCFAVDLDGAWNGCRAVLPGMVERGR-GSIVNIASTHAFKII------- 152 (260)
T ss_pred HHHhCCCcEEEECCCcCCCCChhhCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhhCC-eEEEEECChhhccCC-------
Confidence 57999999996432 122345667899999999999988643 333 389999997654322
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCCCC----ChHHHHHHHHHcCCceEEEeeCCC
Q 012176 260 SHRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPD----MAYFFFTKDILQGKTIDVYKTQDD 332 (469)
Q Consensus 260 ~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~~~----~~~~~~~~~~~~g~~~~~~~~~~~ 332 (469)
.....|+.+|.+.+.+++.++.++ |++++.|+||.|-.+..... ..............+.
T Consensus 153 -----~~~~~Y~~sKaa~~~~~~~la~el~~~gIrvn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 219 (260)
T PRK07063 153 -----PGCFPYPVAKHGLLGLTRALGIEYAARNVRVNAIAPGYIETQLTEDWWNAQPDPAAARAETLALQPM-------- 219 (260)
T ss_pred -----CCchHHHHHHHHHHHHHHHHHHHhCccCeEEEEEeeCCccChhhhhhhhccCChHHHHHHHHhcCCC--------
Confidence 234679999999999999998765 79999999999876632110 0000011111111111
Q ss_pred CcceEecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCCc
Q 012176 333 REVARDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTSP 375 (469)
Q Consensus 333 ~~~~~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~~ 375 (469)
..+..++|++.+++.++..... ...|+++.+.++..
T Consensus 220 ----~r~~~~~~va~~~~fl~s~~~~---~itG~~i~vdgg~~ 255 (260)
T PRK07063 220 ----KRIGRPEEVAMTAVFLASDEAP---FINATCITIDGGRS 255 (260)
T ss_pred ----CCCCCHHHHHHHHHHHcCcccc---ccCCcEEEECCCee
Confidence 1245689999999998765432 34557777776643
|
|
| >PRK07677 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.2e-18 Score=165.50 Aligned_cols=226 Identities=12% Similarity=0.086 Sum_probs=156.5
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhh-ccCCeEEEEecCCCHHHHHHhhccC----
Q 012176 118 GMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLL-QKHQVFIVEGDLNDAPLLTKLFDVV---- 192 (469)
Q Consensus 118 ~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~v~~v~~Dl~d~~~l~~~~~~~---- 192 (469)
+|+++||||+|+||.++++.|+++|+.|++++|+... ......... ....+.++.+|++|+++++++++..
T Consensus 1 ~k~~lItG~s~giG~~ia~~l~~~G~~Vi~~~r~~~~----~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 76 (252)
T PRK07677 1 EKVVIITGGSSGMGKAMAKRFAEEGANVVITGRTKEK----LEEAKLEIEQFPGQVLTVQMDVRNPEDVQKMVEQIDEKF 76 (252)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHH----HHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHh
Confidence 4789999999999999999999999999999986431 122111111 1247889999999999998888654
Q ss_pred -CccEEEEcccccCh----hhhccChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEEcCccccCCCCCCCCCCCCCC
Q 012176 193 -PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCKS----VNPQPSIVWASSSSVYGLNTQVPFSESHRT 263 (469)
Q Consensus 193 -~~d~Vih~Aa~~~~----~~~~~~~~~~~~~Nv~~~~~ll~aa~~----~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~ 263 (469)
++|+||||||.... ....++++.++++|+.++.++++++.. .+..++||++||...+...
T Consensus 77 ~~id~lI~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~ii~isS~~~~~~~----------- 145 (252)
T PRK07677 77 GRIDALINNAAGNFICPAEDLSVNGWNSVIDIVLNGTFYCSQAVGKYWIEKGIKGNIINMVATYAWDAG----------- 145 (252)
T ss_pred CCccEEEECCCCCCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCCEEEEEEcChhhccCC-----------
Confidence 57999999985322 223344567899999999999998743 2333489999987543221
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHh----CCcEEEEeecceecCCCCCCC-hHHHHHHHHHcCCceEEEeeCCCCcceEe
Q 012176 264 DQPASLYAATKKAGEEIAHTYNHIY----GLALTGLRFFTVYGPWGRPDM-AYFFFTKDILQGKTIDVYKTQDDREVARD 338 (469)
Q Consensus 264 ~~p~~~Y~~sK~~~E~~~~~~~~~~----gi~~~ilRp~~v~Gp~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 338 (469)
.....|+.+|.+.+.+++.++.++ |++++.|+||.|.++...... ......+.+.+..++ ..
T Consensus 146 -~~~~~Y~~sKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~~~~~~~~~~~~~~~~~~~~~~~~~------------~~ 212 (252)
T PRK07677 146 -PGVIHSAAAKAGVLAMTRTLAVEWGRKYGIRVNAIAPGPIERTGGADKLWESEEAAKRTIQSVPL------------GR 212 (252)
T ss_pred -CCCcchHHHHHHHHHHHHHHHHHhCcccCeEEEEEeecccccccccccccCCHHHHHHHhccCCC------------CC
Confidence 234579999999999999887663 799999999999854221100 012223333332221 12
Q ss_pred cccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCC
Q 012176 339 FTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTS 374 (469)
Q Consensus 339 ~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~ 374 (469)
+...+|+++++..++..... ...|+++.+.++.
T Consensus 213 ~~~~~~va~~~~~l~~~~~~---~~~g~~~~~~gg~ 245 (252)
T PRK07677 213 LGTPEEIAGLAYFLLSDEAA---YINGTCITMDGGQ 245 (252)
T ss_pred CCCHHHHHHHHHHHcCcccc---ccCCCEEEECCCe
Confidence 56789999988887764321 3455777777654
|
|
| >COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.4e-18 Score=164.42 Aligned_cols=207 Identities=18% Similarity=0.196 Sum_probs=154.2
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhc--cCCeEEEEecCCCHHHHHHhhcc--
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQ--KHQVFIVEGDLNDAPLLTKLFDV-- 191 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~--~~~v~~v~~Dl~d~~~l~~~~~~-- 191 (469)
..+++++|||||+.||..+++.|+++|++|+++.|+.+ .+.+...+..+ .-.++++.+|++|+++++++.+.
T Consensus 4 ~~~~~~lITGASsGIG~~~A~~lA~~g~~liLvaR~~~----kL~~la~~l~~~~~v~v~vi~~DLs~~~~~~~l~~~l~ 79 (265)
T COG0300 4 MKGKTALITGASSGIGAELAKQLARRGYNLILVARRED----KLEALAKELEDKTGVEVEVIPADLSDPEALERLEDELK 79 (265)
T ss_pred CCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCcHH----HHHHHHHHHHHhhCceEEEEECcCCChhHHHHHHHHHH
Confidence 57789999999999999999999999999999999665 33333333333 23688999999999998887753
Q ss_pred ---CCccEEEEcccccChh----hhccChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEEcCccccCCCCCCCCCCC
Q 012176 192 ---VPFTHVLHLAAQAGVR----YAMQNPQSYVASNIAGFVNLLEVC----KSVNPQPSIVWASSSSVYGLNTQVPFSES 260 (469)
Q Consensus 192 ---~~~d~Vih~Aa~~~~~----~~~~~~~~~~~~Nv~~~~~ll~aa----~~~~~~~~~V~~SS~~vyg~~~~~~~~E~ 260 (469)
..+|++|||||..... .+++..++++++|+.++..|..+. .+.+.. +||+++|.+.|-+.
T Consensus 80 ~~~~~IdvLVNNAG~g~~g~f~~~~~~~~~~mi~lN~~a~~~LT~~~lp~m~~~~~G-~IiNI~S~ag~~p~-------- 150 (265)
T COG0300 80 ERGGPIDVLVNNAGFGTFGPFLELSLDEEEEMIQLNILALTRLTKAVLPGMVERGAG-HIINIGSAAGLIPT-------- 150 (265)
T ss_pred hcCCcccEEEECCCcCCccchhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-eEEEEechhhcCCC--------
Confidence 3679999999984432 233444579999999988877764 344544 99999998877543
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceE
Q 012176 261 HRTDQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVAR 337 (469)
Q Consensus 261 ~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 337 (469)
.-.+.|++||...-.+...+..| +|+.|+.|+||.+.....+. .+..... .....
T Consensus 151 ----p~~avY~ATKa~v~~fSeaL~~EL~~~gV~V~~v~PG~~~T~f~~~------------~~~~~~~------~~~~~ 208 (265)
T COG0300 151 ----PYMAVYSATKAFVLSFSEALREELKGTGVKVTAVCPGPTRTEFFDA------------KGSDVYL------LSPGE 208 (265)
T ss_pred ----cchHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEEecCccccccccc------------ccccccc------ccchh
Confidence 33578999999988887777755 48999999999988753321 1111111 11234
Q ss_pred ecccHHHHHHHHHHHhccCC
Q 012176 338 DFTYIDDVVKGCVGATGSGG 357 (469)
Q Consensus 338 ~~v~v~Dva~~~~~~~~~~~ 357 (469)
-++..+|+|++.+.++++..
T Consensus 209 ~~~~~~~va~~~~~~l~~~k 228 (265)
T COG0300 209 LVLSPEDVAEAALKALEKGK 228 (265)
T ss_pred hccCHHHHHHHHHHHHhcCC
Confidence 57789999999999998863
|
|
| >PRK06550 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.8e-18 Score=161.90 Aligned_cols=216 Identities=18% Similarity=0.153 Sum_probs=154.8
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccC-Cc
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV-PF 194 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~-~~ 194 (469)
.++|+++||||+|+||+++++.|+++|++|++++|..... ...++..+.+|++|+ ++++++.. ++
T Consensus 3 l~~k~~lVtGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~------------~~~~~~~~~~D~~~~--~~~~~~~~~~i 68 (235)
T PRK06550 3 FMTKTVLITGAASGIGLAQARAFLAQGAQVYGVDKQDKPD------------LSGNFHFLQLDLSDD--LEPLFDWVPSV 68 (235)
T ss_pred CCCCEEEEcCCCchHHHHHHHHHHHCCCEEEEEeCCcccc------------cCCcEEEEECChHHH--HHHHHHhhCCC
Confidence 4568999999999999999999999999999999854311 123688999999997 44444433 56
Q ss_pred cEEEEcccccC-----hhhhccChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEEcCccccCCCCCCCCCCCCCCCC
Q 012176 195 THVLHLAAQAG-----VRYAMQNPQSYVASNIAGFVNLLEVCKS----VNPQPSIVWASSSSVYGLNTQVPFSESHRTDQ 265 (469)
Q Consensus 195 d~Vih~Aa~~~-----~~~~~~~~~~~~~~Nv~~~~~ll~aa~~----~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~ 265 (469)
|+||||||... .....++.+..+++|+.++.++++++.. .+. ++||++||...+.+. .
T Consensus 69 d~lv~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~-~~iv~~sS~~~~~~~------------~ 135 (235)
T PRK06550 69 DILCNTAGILDDYKPLLDTSLEEWQHIFDTNLTSTFLLTRAYLPQMLERKS-GIIINMCSIASFVAG------------G 135 (235)
T ss_pred CEEEECCCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCC-cEEEEEcChhhccCC------------C
Confidence 99999998532 1223445667899999999999998753 333 389999997654322 2
Q ss_pred CCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceEecccH
Q 012176 266 PASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYI 342 (469)
Q Consensus 266 p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v 342 (469)
....|+.+|.+.+.+++.++.++ |+++++++||.|.++....+.....+...+....+ ...+...
T Consensus 136 ~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~ 203 (235)
T PRK06550 136 GGAAYTASKHALAGFTKQLALDYAKDGIQVFGIAPGAVKTPMTAADFEPGGLADWVARETP------------IKRWAEP 203 (235)
T ss_pred CCcccHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCCccCcccccccCchHHHHHHhccCC------------cCCCCCH
Confidence 34579999999999999988775 89999999999988854332211222222222222 1235678
Q ss_pred HHHHHHHHHHhccCCCCCCCCCceEEEeCCC
Q 012176 343 DDVVKGCVGATGSGGKKRGPAQLRVYNLGNT 373 (469)
Q Consensus 343 ~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~ 373 (469)
+|+|++++.++..... ...|.++.+.++
T Consensus 204 ~~~a~~~~~l~s~~~~---~~~g~~~~~~gg 231 (235)
T PRK06550 204 EEVAELTLFLASGKAD---YMQGTIVPIDGG 231 (235)
T ss_pred HHHHHHHHHHcChhhc---cCCCcEEEECCc
Confidence 9999999999865422 334577777765
|
|
| >PRK05650 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.8e-18 Score=164.91 Aligned_cols=205 Identities=17% Similarity=0.062 Sum_probs=147.2
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhh-ccCCeEEEEecCCCHHHHHHhhccC-----
Q 012176 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLL-QKHQVFIVEGDLNDAPLLTKLFDVV----- 192 (469)
Q Consensus 119 ~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~v~~v~~Dl~d~~~l~~~~~~~----- 192 (469)
|+|+||||+|+||.+++++|+++|++|++++|..+. ......... ....+.++.+|++|++++.++++..
T Consensus 1 ~~vlVtGasggIG~~la~~l~~~g~~V~~~~r~~~~----~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~i~~~~~ 76 (270)
T PRK05650 1 NRVMITGAASGLGRAIALRWAREGWRLALADVNEEG----GEETLKLLREAGGDGFYQRCDVRDYSQLTALAQACEEKWG 76 (270)
T ss_pred CEEEEecCCChHHHHHHHHHHHCCCEEEEEeCCHHH----HHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 579999999999999999999999999999985432 111111111 1346888999999999988887642
Q ss_pred CccEEEEcccccChhh----hccChHHHHHHHHHHHHHHHHH----HHhcCCCCeEEEEcCccccCCCCCCCCCCCCCCC
Q 012176 193 PFTHVLHLAAQAGVRY----AMQNPQSYVASNIAGFVNLLEV----CKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTD 264 (469)
Q Consensus 193 ~~d~Vih~Aa~~~~~~----~~~~~~~~~~~Nv~~~~~ll~a----a~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~ 264 (469)
++|+||||||...... ..++.+..+++|+.++..+.++ +++.+.. +||++||...+.+.
T Consensus 77 ~id~lI~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~-~iv~vsS~~~~~~~------------ 143 (270)
T PRK05650 77 GIDVIVNNAGVASGGFFEELSLEDWDWQIAINLMGVVKGCKAFLPLFKRQKSG-RIVNIASMAGLMQG------------ 143 (270)
T ss_pred CCCEEEECCCCCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhCCCC-EEEEECChhhcCCC------------
Confidence 5799999999754321 2234456789999888887665 4455544 99999997765432
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCCCC----ChHHHHHHHHHcCCceEEEeeCCCCcceE
Q 012176 265 QPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPD----MAYFFFTKDILQGKTIDVYKTQDDREVAR 337 (469)
Q Consensus 265 ~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~~~----~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 337 (469)
.....|+.+|.+.+.+.+.++.++ |+++++++||.+.++..... ........... ..
T Consensus 144 ~~~~~Y~~sKaa~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~----------------~~ 207 (270)
T PRK05650 144 PAMSSYNVAKAGVVALSETLLVELADDEIGVHVVCPSFFQTNLLDSFRGPNPAMKAQVGKLL----------------EK 207 (270)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHhcccCcEEEEEecCccccCcccccccCchhHHHHHHHHh----------------hc
Confidence 345689999999999999888764 89999999999988743321 11111111111 12
Q ss_pred ecccHHHHHHHHHHHhccC
Q 012176 338 DFTYIDDVVKGCVGATGSG 356 (469)
Q Consensus 338 ~~v~v~Dva~~~~~~~~~~ 356 (469)
.+++++|+|+.++.++++.
T Consensus 208 ~~~~~~~vA~~i~~~l~~~ 226 (270)
T PRK05650 208 SPITAADIADYIYQQVAKG 226 (270)
T ss_pred CCCCHHHHHHHHHHHHhCC
Confidence 3578999999999999865
|
|
| >PRK07069 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.4e-18 Score=166.48 Aligned_cols=223 Identities=16% Similarity=0.143 Sum_probs=151.9
Q ss_pred EEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhc---cCCeEEEEecCCCHHHHHHhhccC----
Q 012176 120 TVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQ---KHQVFIVEGDLNDAPLLTKLFDVV---- 192 (469)
Q Consensus 120 ~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~---~~~v~~v~~Dl~d~~~l~~~~~~~---- 192 (469)
+|+||||+|+||.++++.|+++|++|++++|.... ........... ...+..+.+|++|.+.++++++.+
T Consensus 1 ~ilVtG~~~~iG~~~a~~l~~~G~~v~~~~r~~~~---~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 77 (251)
T PRK07069 1 RAFITGAAGGLGRAIARRMAEQGAKVFLTDINDAA---GLDAFAAEINAAHGEGVAFAAVQDVTDEAQWQALLAQAADAM 77 (251)
T ss_pred CEEEECCCChHHHHHHHHHHHCCCEEEEEeCCcch---HHHHHHHHHHhcCCCceEEEEEeecCCHHHHHHHHHHHHHHc
Confidence 38999999999999999999999999999986321 12221111111 123556889999999998887653
Q ss_pred -CccEEEEcccccChh----hhccChHHHHHHHHH----HHHHHHHHHHhcCCCCeEEEEcCccccCCCCCCCCCCCCCC
Q 012176 193 -PFTHVLHLAAQAGVR----YAMQNPQSYVASNIA----GFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRT 263 (469)
Q Consensus 193 -~~d~Vih~Aa~~~~~----~~~~~~~~~~~~Nv~----~~~~ll~aa~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~ 263 (469)
++|+||||||..... ...++....+++|+. ++..++.++++.+.+ +||++||...+...
T Consensus 78 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~-~ii~~ss~~~~~~~----------- 145 (251)
T PRK07069 78 GGLSVLVNNAGVGSFGAIEQIELDEWRRVMAINVESIFLGCKHALPYLRASQPA-SIVNISSVAAFKAE----------- 145 (251)
T ss_pred CCccEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCc-EEEEecChhhccCC-----------
Confidence 579999999975432 122344567889988 667777777776655 99999998776533
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHh-----CCcEEEEeecceecCCCCCCCh---HHHHHHHHHcCCceEEEeeCCCCcc
Q 012176 264 DQPASLYAATKKAGEEIAHTYNHIY-----GLALTGLRFFTVYGPWGRPDMA---YFFFTKDILQGKTIDVYKTQDDREV 335 (469)
Q Consensus 264 ~~p~~~Y~~sK~~~E~~~~~~~~~~-----gi~~~ilRp~~v~Gp~~~~~~~---~~~~~~~~~~g~~~~~~~~~~~~~~ 335 (469)
.....|+.+|.+.+.+++.++.++ +++++.++||.+.+|....... .......+.++.+
T Consensus 146 -~~~~~Y~~sK~a~~~~~~~la~e~~~~~~~i~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~------------ 212 (251)
T PRK07069 146 -PDYTAYNASKAAVASLTKSIALDCARRGLDVRCNSIHPTFIRTGIVDPIFQRLGEEEATRKLARGVP------------ 212 (251)
T ss_pred -CCCchhHHHHHHHHHHHHHHHHHhcccCCcEEEEEEeecccCCcchhHHhhhccchhHHHHHhccCC------------
Confidence 234579999999999999888663 4899999999999885432100 0111122222211
Q ss_pred eEecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCC
Q 012176 336 ARDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNT 373 (469)
Q Consensus 336 ~~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~ 373 (469)
...+.+++|++++++.++..+.. -..|+.+.+.++
T Consensus 213 ~~~~~~~~~va~~~~~l~~~~~~---~~~g~~i~~~~g 247 (251)
T PRK07069 213 LGRLGEPDDVAHAVLYLASDESR---FVTGAELVIDGG 247 (251)
T ss_pred CCCCcCHHHHHHHHHHHcCcccc---CccCCEEEECCC
Confidence 12345789999999988765432 234466656544
|
|
| >PRK08589 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.6e-18 Score=168.57 Aligned_cols=229 Identities=16% Similarity=0.110 Sum_probs=156.1
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhc-cCCeEEEEecCCCHHHHHHhhccC--
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQ-KHQVFIVEGDLNDAPLLTKLFDVV-- 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~v~~v~~Dl~d~~~l~~~~~~~-- 192 (469)
.++|++|||||+|+||+++++.|+++|++|++++|+ . ........... ..++..+.+|++|+++++++++.+
T Consensus 4 l~~k~vlItGas~gIG~aia~~l~~~G~~vi~~~r~-~----~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 78 (272)
T PRK08589 4 LENKVAVITGASTGIGQASAIALAQEGAYVLAVDIA-E----AVSETVDKIKSNGGKAKAYHVDISDEQQVKDFASEIKE 78 (272)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCc-H----HHHHHHHHHHhcCCeEEEEEeecCCHHHHHHHHHHHHH
Confidence 567899999999999999999999999999999985 2 12222222211 236889999999999988887753
Q ss_pred ---CccEEEEcccccCh--h---hhccChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEEcCccccCCCCCCCCCCC
Q 012176 193 ---PFTHVLHLAAQAGV--R---YAMQNPQSYVASNIAGFVNLLEVCK----SVNPQPSIVWASSSSVYGLNTQVPFSES 260 (469)
Q Consensus 193 ---~~d~Vih~Aa~~~~--~---~~~~~~~~~~~~Nv~~~~~ll~aa~----~~~~~~~~V~~SS~~vyg~~~~~~~~E~ 260 (469)
++|++|||||.... . ...+..+..+++|+.++..+++++. +.+ ++||++||...+.+.
T Consensus 79 ~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~--g~iv~isS~~~~~~~-------- 148 (272)
T PRK08589 79 QFGRVDVLFNNAGVDNAAGRIHEYPVDVFDKIMAVDMRGTFLMTKMLLPLMMEQG--GSIINTSSFSGQAAD-------- 148 (272)
T ss_pred HcCCcCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC--CEEEEeCchhhcCCC--------
Confidence 57999999997432 1 1223445788999999888777654 333 489999997765422
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCCCCC--hHHHHHHHHHcCCceEEEeeCCCCcc
Q 012176 261 HRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDM--AYFFFTKDILQGKTIDVYKTQDDREV 335 (469)
Q Consensus 261 ~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~~~~--~~~~~~~~~~~g~~~~~~~~~~~~~~ 335 (469)
.....|+.+|.+.+.+++.++.++ |+++++|+||.|..+...... ....+......... . ...
T Consensus 149 ----~~~~~Y~asKaal~~l~~~la~e~~~~gI~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~---~-----~~~ 216 (272)
T PRK08589 149 ----LYRSGYNAAKGAVINFTKSIAIEYGRDGIRANAIAPGTIETPLVDKLTGTSEDEAGKTFRENQK---W-----MTP 216 (272)
T ss_pred ----CCCchHHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCcccCchhhhhcccchhhHHHHHhhhhh---c-----cCC
Confidence 234679999999999999998764 799999999999876322100 00000000000000 0 001
Q ss_pred eEecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCC
Q 012176 336 ARDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTS 374 (469)
Q Consensus 336 ~~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~ 374 (469)
...+..++|++++++.++..... ...|+++.+.++.
T Consensus 217 ~~~~~~~~~va~~~~~l~s~~~~---~~~G~~i~vdgg~ 252 (272)
T PRK08589 217 LGRLGKPEEVAKLVVFLASDDSS---FITGETIRIDGGV 252 (272)
T ss_pred CCCCcCHHHHHHHHHHHcCchhc---CcCCCEEEECCCc
Confidence 11256789999999998765422 3445788777664
|
|
| >PRK08219 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.2e-18 Score=162.35 Aligned_cols=208 Identities=16% Similarity=0.114 Sum_probs=145.9
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccC-CccE
Q 012176 118 GMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV-PFTH 196 (469)
Q Consensus 118 ~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~-~~d~ 196 (469)
+|+|+||||+|+||+++++.|+++ ++|++++|+.. ....... ...+++++.+|++|.++++++++.. ++|+
T Consensus 3 ~~~vlVtG~~g~iG~~l~~~l~~~-~~V~~~~r~~~----~~~~~~~---~~~~~~~~~~D~~~~~~~~~~~~~~~~id~ 74 (227)
T PRK08219 3 RPTALITGASRGIGAAIARELAPT-HTLLLGGRPAE----RLDELAA---ELPGATPFPVDLTDPEAIAAAVEQLGRLDV 74 (227)
T ss_pred CCEEEEecCCcHHHHHHHHHHHhh-CCEEEEeCCHH----HHHHHHH---HhccceEEecCCCCHHHHHHHHHhcCCCCE
Confidence 478999999999999999999999 99999999532 1111111 1236889999999999999999864 5799
Q ss_pred EEEcccccChh----hhccChHHHHHHHHHHHHHHHH----HHHhcCCCCeEEEEcCccccCCCCCCCCCCCCCCCCCCC
Q 012176 197 VLHLAAQAGVR----YAMQNPQSYVASNIAGFVNLLE----VCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPAS 268 (469)
Q Consensus 197 Vih~Aa~~~~~----~~~~~~~~~~~~Nv~~~~~ll~----aa~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~ 268 (469)
|||++|..... ...++....++.|+.+...+.+ ++++.+ .++|++||...++.. .+..
T Consensus 75 vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~--~~~v~~ss~~~~~~~------------~~~~ 140 (227)
T PRK08219 75 LVHNAGVADLGPVAESTVDEWRATLEVNVVAPAELTRLLLPALRAAH--GHVVFINSGAGLRAN------------PGWG 140 (227)
T ss_pred EEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCC--CeEEEEcchHhcCcC------------CCCc
Confidence 99999974422 1123345678889998555444 444443 389999998776432 3356
Q ss_pred hHHHHHHHHHHHHHHHHHHh-C-CcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceEecccHHHHH
Q 012176 269 LYAATKKAGEEIAHTYNHIY-G-LALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVV 346 (469)
Q Consensus 269 ~Y~~sK~~~E~~~~~~~~~~-g-i~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva 346 (469)
.|+.+|.+.|.+++.++.+. + ++++.++||.+.++... .+... .+. ......+++++|++
T Consensus 141 ~y~~~K~a~~~~~~~~~~~~~~~i~~~~i~pg~~~~~~~~------~~~~~--~~~----------~~~~~~~~~~~dva 202 (227)
T PRK08219 141 SYAASKFALRALADALREEEPGNVRVTSVHPGRTDTDMQR------GLVAQ--EGG----------EYDPERYLRPETVA 202 (227)
T ss_pred hHHHHHHHHHHHHHHHHHHhcCCceEEEEecCCccchHhh------hhhhh--hcc----------ccCCCCCCCHHHHH
Confidence 79999999999989887643 4 89999999887664211 11110 011 11124579999999
Q ss_pred HHHHHHhccCCCCCCCCCceEEEeC
Q 012176 347 KGCVGATGSGGKKRGPAQLRVYNLG 371 (469)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~iyni~ 371 (469)
++++.+++++. .+.+|++.
T Consensus 203 ~~~~~~l~~~~------~~~~~~~~ 221 (227)
T PRK08219 203 KAVRFAVDAPP------DAHITEVV 221 (227)
T ss_pred HHHHHHHcCCC------CCccceEE
Confidence 99999997652 23666654
|
|
| >PRK05867 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.7e-18 Score=164.93 Aligned_cols=227 Identities=15% Similarity=0.080 Sum_probs=158.5
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhh-ccCCeEEEEecCCCHHHHHHhhccC--
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLL-QKHQVFIVEGDLNDAPLLTKLFDVV-- 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~v~~v~~Dl~d~~~l~~~~~~~-- 192 (469)
.++|+++||||+|+||.++++.|+++|++|++++|+.+. ......... ...++..+.+|++|+++++++++..
T Consensus 7 ~~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~----~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 82 (253)
T PRK05867 7 LHGKRALITGASTGIGKRVALAYVEAGAQVAIAARHLDA----LEKLADEIGTSGGKVVPVCCDVSQHQQVTSMLDQVTA 82 (253)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHH----HHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHH
Confidence 567899999999999999999999999999999985431 222211111 1246888999999999998888743
Q ss_pred ---CccEEEEcccccChh----hhccChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEEcCccccCCCCCCCCCCCC
Q 012176 193 ---PFTHVLHLAAQAGVR----YAMQNPQSYVASNIAGFVNLLEVCKS----VNPQPSIVWASSSSVYGLNTQVPFSESH 261 (469)
Q Consensus 193 ---~~d~Vih~Aa~~~~~----~~~~~~~~~~~~Nv~~~~~ll~aa~~----~~~~~~~V~~SS~~vyg~~~~~~~~E~~ 261 (469)
++|+||||||..... ...+..+..+++|+.++..+++++.. .+...++|++||....-...
T Consensus 83 ~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~~-------- 154 (253)
T PRK05867 83 ELGGIDIAVCNAGIITVTPMLDMPLEEFQRLQNTNVTGVFLTAQAAAKAMVKQGQGGVIINTASMSGHIINV-------- 154 (253)
T ss_pred HhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCcEEEEECcHHhcCCCC--------
Confidence 679999999974321 22344557789999999999988643 23224799999865321110
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceEe
Q 012176 262 RTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARD 338 (469)
Q Consensus 262 ~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 338 (469)
+ .....|+.+|.+.+.+++.++.++ |+++++|+||.|-.+...... ..........++ ..
T Consensus 155 -~-~~~~~Y~asKaal~~~~~~la~e~~~~gI~vn~i~PG~v~t~~~~~~~---~~~~~~~~~~~~------------~r 217 (253)
T PRK05867 155 -P-QQVSHYCASKAAVIHLTKAMAVELAPHKIRVNSVSPGYILTELVEPYT---EYQPLWEPKIPL------------GR 217 (253)
T ss_pred -C-CCccchHHHHHHHHHHHHHHHHHHhHhCeEEEEeecCCCCCcccccch---HHHHHHHhcCCC------------CC
Confidence 0 123579999999999999998764 899999999999877433211 112222222111 12
Q ss_pred cccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCC
Q 012176 339 FTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTS 374 (469)
Q Consensus 339 ~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~ 374 (469)
+..++|+|++++.++..... ...|+++.+.++.
T Consensus 218 ~~~p~~va~~~~~L~s~~~~---~~tG~~i~vdgG~ 250 (253)
T PRK05867 218 LGRPEELAGLYLYLASEASS---YMTGSDIVIDGGY 250 (253)
T ss_pred CcCHHHHHHHHHHHcCcccC---CcCCCeEEECCCc
Confidence 56789999999998865422 3456888887764
|
|
| >PRK08277 D-mannonate oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.8e-18 Score=167.22 Aligned_cols=226 Identities=15% Similarity=0.123 Sum_probs=158.2
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhc-cCCeEEEEecCCCHHHHHHhhccC--
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQ-KHQVFIVEGDLNDAPLLTKLFDVV-- 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~v~~v~~Dl~d~~~l~~~~~~~-- 192 (469)
.++++++||||+|+||++++++|+++|++|++++|+.+. .......... ..++.++.+|++|.+++.++++..
T Consensus 8 ~~~k~vlVtGas~giG~~ia~~l~~~G~~V~~~~r~~~~----~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~ 83 (278)
T PRK08277 8 LKGKVAVITGGGGVLGGAMAKELARAGAKVAILDRNQEK----AEAVVAEIKAAGGEALAVKADVLDKESLEQARQQILE 83 (278)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHH----HHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHH
Confidence 567899999999999999999999999999999985431 1111111111 236889999999999988887643
Q ss_pred ---CccEEEEcccccChh-------------------hhccChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEEcCc
Q 012176 193 ---PFTHVLHLAAQAGVR-------------------YAMQNPQSYVASNIAGFVNLLEVCK----SVNPQPSIVWASSS 246 (469)
Q Consensus 193 ---~~d~Vih~Aa~~~~~-------------------~~~~~~~~~~~~Nv~~~~~ll~aa~----~~~~~~~~V~~SS~ 246 (469)
++|+||||||..... ...++.+..+++|+.++..+++++. +.+. ++||++||.
T Consensus 84 ~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~-g~ii~isS~ 162 (278)
T PRK08277 84 DFGPCDILINGAGGNHPKATTDNEFHELIEPTKTFFDLDEEGFEFVFDLNLLGTLLPTQVFAKDMVGRKG-GNIINISSM 162 (278)
T ss_pred HcCCCCEEEECCCCCCcccccccccccccccccccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCC-cEEEEEccc
Confidence 579999999963221 1234456788999999887766543 3443 389999998
Q ss_pred cccCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCCC-----CChHHHHHHHH
Q 012176 247 SVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRP-----DMAYFFFTKDI 318 (469)
Q Consensus 247 ~vyg~~~~~~~~E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~~-----~~~~~~~~~~~ 318 (469)
..+.+. .+...|+.+|.+.+.+++.++.++ |+++++|+||.|.++.... +.........+
T Consensus 163 ~~~~~~------------~~~~~Y~~sK~a~~~l~~~la~e~~~~girvn~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~ 230 (278)
T PRK08277 163 NAFTPL------------TKVPAYSAAKAAISNFTQWLAVHFAKVGIRVNAIAPGFFLTEQNRALLFNEDGSLTERANKI 230 (278)
T ss_pred hhcCCC------------CCCchhHHHHHHHHHHHHHHHHHhCccCeEEEEEEeccCcCcchhhhhccccccchhHHHHH
Confidence 876532 345679999999999999998876 7999999999999874321 00011111222
Q ss_pred HcCCceEEEeeCCCCcceEecccHHHHHHHHHHHhcc-CCCCCCCCCceEEEeCCC
Q 012176 319 LQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGATGS-GGKKRGPAQLRVYNLGNT 373 (469)
Q Consensus 319 ~~g~~~~~~~~~~~~~~~~~~v~v~Dva~~~~~~~~~-~~~~~~~~~~~iyni~~~ 373 (469)
....+ ...+...+|+|++++.++.. ... -..|.++.+.++
T Consensus 231 ~~~~p------------~~r~~~~~dva~~~~~l~s~~~~~---~~tG~~i~vdgG 271 (278)
T PRK08277 231 LAHTP------------MGRFGKPEELLGTLLWLADEKASS---FVTGVVLPVDGG 271 (278)
T ss_pred hccCC------------ccCCCCHHHHHHHHHHHcCccccC---CcCCCEEEECCC
Confidence 22211 12356789999999998765 321 234577877665
|
|
| >PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed | Back alignment and domain information |
|---|
Probab=99.81 E-value=5.5e-18 Score=161.54 Aligned_cols=223 Identities=14% Similarity=0.035 Sum_probs=154.4
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccC---
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~--- 192 (469)
.++++++||||+|+||++++++|+++|+.|++.+|..+ .+....... ..++.++.+|++|.++++++++..
T Consensus 4 ~~~~~vlItGa~g~iG~~la~~l~~~g~~v~~~~~~~~----~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~ 77 (245)
T PRK12936 4 LSGRKALVTGASGGIGEEIARLLHAQGAIVGLHGTRVE----KLEALAAEL--GERVKIFPANLSDRDEVKALGQKAEAD 77 (245)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHH----HHHHHHHHh--CCceEEEEccCCCHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999988877432 111111111 236889999999999998887642
Q ss_pred --CccEEEEcccccCh----hhhccChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEEcCccccCCCCCCCCCCCCC
Q 012176 193 --PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCKS----VNPQPSIVWASSSSVYGLNTQVPFSESHR 262 (469)
Q Consensus 193 --~~d~Vih~Aa~~~~----~~~~~~~~~~~~~Nv~~~~~ll~aa~~----~~~~~~~V~~SS~~vyg~~~~~~~~E~~~ 262 (469)
++|+||||||.... ....++.+..+++|+.++.++++++.. .+. ++||++||...+.+.
T Consensus 78 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~-~~iv~~sS~~~~~~~---------- 146 (245)
T PRK12936 78 LEGVDILVNNAGITKDGLFVRMSDEDWDSVLEVNLTATFRLTRELTHPMMRRRY-GRIINITSVVGVTGN---------- 146 (245)
T ss_pred cCCCCEEEECCCCCCCCccccCCHHHHHHHHhhccHHHHHHHHHHHHHHHHhCC-CEEEEECCHHhCcCC----------
Confidence 57999999997432 123345667899999999999887643 343 389999996443222
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceEec
Q 012176 263 TDQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDF 339 (469)
Q Consensus 263 ~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 339 (469)
.....|+.+|.+.+.+++.++.+ .|+++++++||.+..+...... ........... ....+
T Consensus 147 --~~~~~Y~~sk~a~~~~~~~la~~~~~~~i~v~~i~pg~~~t~~~~~~~--~~~~~~~~~~~------------~~~~~ 210 (245)
T PRK12936 147 --PGQANYCASKAGMIGFSKSLAQEIATRNVTVNCVAPGFIESAMTGKLN--DKQKEAIMGAI------------PMKRM 210 (245)
T ss_pred --CCCcchHHHHHHHHHHHHHHHHHhhHhCeEEEEEEECcCcCchhcccC--hHHHHHHhcCC------------CCCCC
Confidence 12356999999999888887765 4799999999988765332111 11111111111 11235
Q ss_pred ccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCC
Q 012176 340 TYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTS 374 (469)
Q Consensus 340 v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~ 374 (469)
..++|++++++.++..... ...|++|++.++.
T Consensus 211 ~~~~~ia~~~~~l~~~~~~---~~~G~~~~~~~g~ 242 (245)
T PRK12936 211 GTGAEVASAVAYLASSEAA---YVTGQTIHVNGGM 242 (245)
T ss_pred cCHHHHHHHHHHHcCcccc---CcCCCEEEECCCc
Confidence 6799999999888754321 2356899988764
|
|
| >PRK12938 acetyacetyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.8e-18 Score=162.31 Aligned_cols=224 Identities=14% Similarity=0.061 Sum_probs=154.5
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhh-ccCCeEEEEecCCCHHHHHHhhccC---
Q 012176 117 NGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLL-QKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (469)
Q Consensus 117 ~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~v~~v~~Dl~d~~~l~~~~~~~--- 192 (469)
++|+++||||+|+||++++++|+++|++|++..+... ........... ....+..+.+|+.|.++++++++..
T Consensus 2 ~~k~~lVtG~s~giG~~~a~~l~~~G~~vv~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 78 (246)
T PRK12938 2 SQRIAYVTGGMGGIGTSICQRLHKDGFKVVAGCGPNS---PRRVKWLEDQKALGFDFIASEGNVGDWDSTKAAFDKVKAE 78 (246)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHcCCEEEEEcCCCh---HHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 4689999999999999999999999999988654221 11111111111 1235778899999999988887643
Q ss_pred --CccEEEEcccccCh----hhhccChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEEcCccccCCCCCCCCCCCCC
Q 012176 193 --PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVC----KSVNPQPSIVWASSSSVYGLNTQVPFSESHR 262 (469)
Q Consensus 193 --~~d~Vih~Aa~~~~----~~~~~~~~~~~~~Nv~~~~~ll~aa----~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~ 262 (469)
++|+||||||.... ....++.+.++++|+.++..+++++ ++.+.. +||++||.....+.
T Consensus 79 ~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~-~iv~isS~~~~~~~---------- 147 (246)
T PRK12938 79 VGEIDVLVNNAGITRDVVFRKMTREDWTAVIDTNLTSLFNVTKQVIDGMVERGWG-RIINISSVNGQKGQ---------- 147 (246)
T ss_pred hCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCe-EEEEEechhccCCC----------
Confidence 57999999997432 2234556778999999977776654 344544 89999996543211
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceEec
Q 012176 263 TDQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDF 339 (469)
Q Consensus 263 ~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 339 (469)
.....|+.+|.+.+.+++.++.+ .|+++++|+||.+.+|..... .+.+...+....+. ..+
T Consensus 148 --~~~~~y~~sK~a~~~~~~~l~~~~~~~gi~v~~i~pg~~~t~~~~~~--~~~~~~~~~~~~~~------------~~~ 211 (246)
T PRK12938 148 --FGQTNYSTAKAGIHGFTMSLAQEVATKGVTVNTVSPGYIGTDMVKAI--RPDVLEKIVATIPV------------RRL 211 (246)
T ss_pred --CCChhHHHHHHHHHHHHHHHHHHhhhhCeEEEEEEecccCCchhhhc--ChHHHHHHHhcCCc------------cCC
Confidence 34578999999999998888765 479999999999988754321 12233333322221 234
Q ss_pred ccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCC
Q 012176 340 TYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNT 373 (469)
Q Consensus 340 v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~ 373 (469)
..++|++.+++.++..... ...|+++.+.++
T Consensus 212 ~~~~~v~~~~~~l~~~~~~---~~~g~~~~~~~g 242 (246)
T PRK12938 212 GSPDEIGSIVAWLASEESG---FSTGADFSLNGG 242 (246)
T ss_pred cCHHHHHHHHHHHcCcccC---CccCcEEEECCc
Confidence 5689999999988765432 345578887665
|
|
| >PRK08226 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=9.8e-18 Score=161.88 Aligned_cols=227 Identities=16% Similarity=0.128 Sum_probs=157.7
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhh-ccCCeEEEEecCCCHHHHHHhhccC--
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLL-QKHQVFIVEGDLNDAPLLTKLFDVV-- 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~v~~v~~Dl~d~~~l~~~~~~~-- 192 (469)
.++++++||||+|+||+++++.|+++|++|++++|... ......... ...++.++.+|++|.++++++++..
T Consensus 4 ~~~~~~lItG~s~giG~~la~~l~~~G~~Vv~~~r~~~-----~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~ 78 (263)
T PRK08226 4 LTGKTALITGALQGIGEGIARVFARHGANLILLDISPE-----IEKLADELCGRGHRCTAVVADVRDPASVAAAIKRAKE 78 (263)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEecCCHH-----HHHHHHHHHHhCCceEEEECCCCCHHHHHHHHHHHHH
Confidence 56789999999999999999999999999999998542 111111111 1346788999999999998888753
Q ss_pred ---CccEEEEcccccChh----hhccChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEEcCccccCCCCCCCCCCCC
Q 012176 193 ---PFTHVLHLAAQAGVR----YAMQNPQSYVASNIAGFVNLLEVCKS----VNPQPSIVWASSSSVYGLNTQVPFSESH 261 (469)
Q Consensus 193 ---~~d~Vih~Aa~~~~~----~~~~~~~~~~~~Nv~~~~~ll~aa~~----~~~~~~~V~~SS~~vyg~~~~~~~~E~~ 261 (469)
++|+||||||..... ...+..+..+++|+.++..+++++.. .+. ++||++||......
T Consensus 79 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~-~~iv~isS~~~~~~---------- 147 (263)
T PRK08226 79 KEGRIDILVNNAGVCRLGSFLDMSDEDRDFHIDINIKGVWNVTKAVLPEMIARKD-GRIVMMSSVTGDMV---------- 147 (263)
T ss_pred HcCCCCEEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCC-cEEEEECcHHhccc----------
Confidence 679999999974332 12233456789999999999998653 233 38999998653210
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCCC------CChHHHHHHHHHcCCceEEEeeCCC
Q 012176 262 RTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRP------DMAYFFFTKDILQGKTIDVYKTQDD 332 (469)
Q Consensus 262 ~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~~------~~~~~~~~~~~~~g~~~~~~~~~~~ 332 (469)
.......|+.+|.+.|.+++.++.++ |++++.|+||.+.++.... ......+...+..+.|+
T Consensus 148 -~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~i~v~~i~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~p~-------- 218 (263)
T PRK08226 148 -ADPGETAYALTKAAIVGLTKSLAVEYAQSGIRVNAICPGYVRTPMAESIARQSNPEDPESVLTEMAKAIPL-------- 218 (263)
T ss_pred -CCCCcchHHHHHHHHHHHHHHHHHHhcccCcEEEEEecCcccCHHHHhhhhhccCCCcHHHHHHHhccCCC--------
Confidence 01234679999999999999998765 7999999999998873211 00112333444333322
Q ss_pred CcceEecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCC
Q 012176 333 REVARDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTS 374 (469)
Q Consensus 333 ~~~~~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~ 374 (469)
..+..++|++++++.++..... ...|+++-+.++.
T Consensus 219 ----~~~~~~~~va~~~~~l~~~~~~---~~~g~~i~~dgg~ 253 (263)
T PRK08226 219 ----RRLADPLEVGELAAFLASDESS---YLTGTQNVIDGGS 253 (263)
T ss_pred ----CCCCCHHHHHHHHHHHcCchhc---CCcCceEeECCCc
Confidence 1245789999998887754321 2345777776653
|
|
| >PRK08339 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.2e-18 Score=164.76 Aligned_cols=230 Identities=12% Similarity=0.041 Sum_probs=159.2
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhh--ccCCeEEEEecCCCHHHHHHhhccC-
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLL--QKHQVFIVEGDLNDAPLLTKLFDVV- 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~v~~v~~Dl~d~~~l~~~~~~~- 192 (469)
.++|+++||||+|+||.+++++|+++|++|++++|+.+. ......... ...++.++.+|++|+++++++++..
T Consensus 6 l~~k~~lItGas~gIG~aia~~l~~~G~~V~~~~r~~~~----~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~ 81 (263)
T PRK08339 6 LSGKLAFTTASSKGIGFGVARVLARAGADVILLSRNEEN----LKKAREKIKSESNVDVSYIVADLTKREDLERTVKELK 81 (263)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHH----HHHHHHHHHhhcCCceEEEEecCCCHHHHHHHHHHHH
Confidence 567899999999999999999999999999999985432 122121111 1346889999999999998888743
Q ss_pred ---CccEEEEcccccCh----hhhccChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEEcCccccCCCCCCCCCCCC
Q 012176 193 ---PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVC----KSVNPQPSIVWASSSSVYGLNTQVPFSESH 261 (469)
Q Consensus 193 ---~~d~Vih~Aa~~~~----~~~~~~~~~~~~~Nv~~~~~ll~aa----~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~ 261 (469)
++|++|||||.... +...++.+..+++|+.+...+++++ ++.+. ++||++||.+.+.+.
T Consensus 82 ~~g~iD~lv~nag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~m~~~~~-g~Ii~isS~~~~~~~--------- 151 (263)
T PRK08339 82 NIGEPDIFFFSTGGPKPGYFMEMSMEDWEGAVKLLLYPAVYLTRALVPAMERKGF-GRIIYSTSVAIKEPI--------- 151 (263)
T ss_pred hhCCCcEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCC-CEEEEEcCccccCCC---------
Confidence 57999999996432 2234556678999998877776654 34443 489999998765321
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCCC---------CChHHHHHHHHHcCCceEEEee
Q 012176 262 RTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRP---------DMAYFFFTKDILQGKTIDVYKT 329 (469)
Q Consensus 262 ~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~~---------~~~~~~~~~~~~~g~~~~~~~~ 329 (469)
.....|+.+|.+.+.+++.++.++ ||+++.|.||.|..+.... ..........+.+..|
T Consensus 152 ---~~~~~y~asKaal~~l~~~la~el~~~gIrVn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p------ 222 (263)
T PRK08339 152 ---PNIALSNVVRISMAGLVRTLAKELGPKGITVNGIMPGIIRTDRVIQLAQDRAKREGKSVEEALQEYAKPIP------ 222 (263)
T ss_pred ---CcchhhHHHHHHHHHHHHHHHHHhcccCeEEEEEEeCcCccHHHHHHHHhhhhccCCCHHHHHHHHhccCC------
Confidence 234579999999999999998764 7999999999997652110 0000111111211111
Q ss_pred CCCCcceEecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCCccc
Q 012176 330 QDDREVARDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTSPVP 377 (469)
Q Consensus 330 ~~~~~~~~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~~vt 377 (469)
...+..++|++.+++.++..... -..|+++.+.++..++
T Consensus 223 ------~~r~~~p~dva~~v~fL~s~~~~---~itG~~~~vdgG~~~~ 261 (263)
T PRK08339 223 ------LGRLGEPEEIGYLVAFLASDLGS---YINGAMIPVDGGRLNS 261 (263)
T ss_pred ------cccCcCHHHHHHHHHHHhcchhc---CccCceEEECCCcccc
Confidence 12356789999999998765422 2445888887765443
|
|
| >PRK07453 protochlorophyllide oxidoreductase; Validated | Back alignment and domain information |
|---|
Probab=99.81 E-value=8.8e-19 Score=174.58 Aligned_cols=185 Identities=21% Similarity=0.174 Sum_probs=133.8
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHh-hccCCeEEEEecCCCHHHHHHhhccC--
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKL-LQKHQVFIVEGDLNDAPLLTKLFDVV-- 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~v~~v~~Dl~d~~~l~~~~~~~-- 192 (469)
..+++|+||||+|+||.+++++|+++|++|++++|+.... ....... .....+.++.+|++|.++++++++..
T Consensus 4 ~~~k~vlVTGas~gIG~~~a~~L~~~G~~V~~~~r~~~~~----~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~ 79 (322)
T PRK07453 4 DAKGTVIITGASSGVGLYAAKALAKRGWHVIMACRNLKKA----EAAAQELGIPPDSYTIIHIDLGDLDSVRRFVDDFRA 79 (322)
T ss_pred CCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEECCHHHH----HHHHHHhhccCCceEEEEecCCCHHHHHHHHHHHHH
Confidence 4678999999999999999999999999999999854321 1111111 11236889999999999998888752
Q ss_pred ---CccEEEEcccccCh-----hhhccChHHHHHHHHHHHHHHHHHHHh----cCC-CCeEEEEcCccccCCCC--C--C
Q 012176 193 ---PFTHVLHLAAQAGV-----RYAMQNPQSYVASNIAGFVNLLEVCKS----VNP-QPSIVWASSSSVYGLNT--Q--V 255 (469)
Q Consensus 193 ---~~d~Vih~Aa~~~~-----~~~~~~~~~~~~~Nv~~~~~ll~aa~~----~~~-~~~~V~~SS~~vyg~~~--~--~ 255 (469)
++|+||||||.... ..+.++++..+++|+.|+..+++++.. .+. ..+||++||...+.... . .
T Consensus 80 ~~~~iD~li~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~~riV~vsS~~~~~~~~~~~~~~ 159 (322)
T PRK07453 80 LGKPLDALVCNAAVYMPLLKEPLRSPQGYELSMATNHLGHFLLCNLLLEDLKKSPAPDPRLVILGTVTANPKELGGKIPI 159 (322)
T ss_pred hCCCccEEEECCcccCCCCCCCCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCCCCceEEEEcccccCccccCCccCC
Confidence 47999999996432 223445678899999999999887654 222 13899999976653110 0 0
Q ss_pred C--CCC-----------------CCCCCCCCChHHHHHHHHHHHHHHHHHHh----CCcEEEEeecceecCC
Q 012176 256 P--FSE-----------------SHRTDQPASLYAATKKAGEEIAHTYNHIY----GLALTGLRFFTVYGPW 304 (469)
Q Consensus 256 ~--~~E-----------------~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~----gi~~~ilRp~~v~Gp~ 304 (469)
+ .+. +..+..|...|+.||++.+.+++.+++++ |++++++|||.|++..
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~SK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~~t~ 231 (322)
T PRK07453 160 PAPADLGDLSGFEAGFKAPISMADGKKFKPGKAYKDSKLCNMLTMRELHRRYHESTGITFSSLYPGCVADTP 231 (322)
T ss_pred CCccchhhhhcchhcccccccccCccCCCccchhhHhHHHHHHHHHHHHHhhcccCCeEEEEecCCcccCCc
Confidence 0 000 00112466789999999998888888765 7999999999998643
|
|
| >PRK05993 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.2e-18 Score=169.82 Aligned_cols=165 Identities=17% Similarity=0.134 Sum_probs=127.6
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccC----
Q 012176 117 NGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV---- 192 (469)
Q Consensus 117 ~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~---- 192 (469)
.+++|+||||+|+||.+++++|+++|++|++++|+.+. +. .+...+++++.+|++|.++++++++.+
T Consensus 3 ~~k~vlItGasggiG~~la~~l~~~G~~Vi~~~r~~~~----~~-----~l~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~ 73 (277)
T PRK05993 3 MKRSILITGCSSGIGAYCARALQSDGWRVFATCRKEED----VA-----ALEAEGLEAFQLDYAEPESIAALVAQVLELS 73 (277)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHH----HH-----HHHHCCceEEEccCCCHHHHHHHHHHHHHHc
Confidence 35789999999999999999999999999999995431 11 112236889999999999988887643
Q ss_pred --CccEEEEcccccChh----hhccChHHHHHHHHHH----HHHHHHHHHhcCCCCeEEEEcCccccCCCCCCCCCCCCC
Q 012176 193 --PFTHVLHLAAQAGVR----YAMQNPQSYVASNIAG----FVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHR 262 (469)
Q Consensus 193 --~~d~Vih~Aa~~~~~----~~~~~~~~~~~~Nv~~----~~~ll~aa~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~ 262 (469)
++|+||||||..... ...+..+..+++|+.| +..+++.+++.+.. +||++||...+.+.
T Consensus 74 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~l~~~~~~~~g-~iv~isS~~~~~~~---------- 142 (277)
T PRK05993 74 GGRLDALFNNGAYGQPGAVEDLPTEALRAQFEANFFGWHDLTRRVIPVMRKQGQG-RIVQCSSILGLVPM---------- 142 (277)
T ss_pred CCCccEEEECCCcCCCCCcccCCHHHHHHHHhHHhHHHHHHHHHHHHHHhhcCCC-EEEEECChhhcCCC----------
Confidence 579999999874332 1223445789999999 55566667766665 99999997654321
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeecceecC
Q 012176 263 TDQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGP 303 (469)
Q Consensus 263 ~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~Gp 303 (469)
.+...|+.+|.+.|.+++.++.+ +|+++++|+||.|-.+
T Consensus 143 --~~~~~Y~asK~a~~~~~~~l~~el~~~gi~v~~v~Pg~v~T~ 184 (277)
T PRK05993 143 --KYRGAYNASKFAIEGLSLTLRMELQGSGIHVSLIEPGPIETR 184 (277)
T ss_pred --CccchHHHHHHHHHHHHHHHHHHhhhhCCEEEEEecCCccCc
Confidence 34578999999999999988744 5899999999998776
|
|
| >PRK06172 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.5e-18 Score=164.02 Aligned_cols=227 Identities=15% Similarity=0.093 Sum_probs=160.4
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhh-ccCCeEEEEecCCCHHHHHHhhccC--
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLL-QKHQVFIVEGDLNDAPLLTKLFDVV-- 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~v~~v~~Dl~d~~~l~~~~~~~-- 192 (469)
.++++|+||||+|+||.+++++|+++|++|++++|+.+. ..+...... ....+..+.+|++|.++++++++.+
T Consensus 5 l~~k~ilItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~----~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~ 80 (253)
T PRK06172 5 FSGKVALVTGGAAGIGRATALAFAREGAKVVVADRDAAG----GEETVALIREAGGEALFVACDVTRDAEVKALVEQTIA 80 (253)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHH----HHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHH
Confidence 457899999999999999999999999999999996532 111111111 1236889999999999998888764
Q ss_pred ---CccEEEEcccccCh-----hhhccChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEEcCccccCCCCCCCCCCC
Q 012176 193 ---PFTHVLHLAAQAGV-----RYAMQNPQSYVASNIAGFVNLLEVCK----SVNPQPSIVWASSSSVYGLNTQVPFSES 260 (469)
Q Consensus 193 ---~~d~Vih~Aa~~~~-----~~~~~~~~~~~~~Nv~~~~~ll~aa~----~~~~~~~~V~~SS~~vyg~~~~~~~~E~ 260 (469)
++|+||||||.... ....++++..+++|+.++..+++++. +.+. +++|++||...+.+.
T Consensus 81 ~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~-~~ii~~sS~~~~~~~-------- 151 (253)
T PRK06172 81 AYGRLDYAFNNAGIEIEQGRLAEGSEAEFDAIMGVNVKGVWLCMKYQIPLMLAQGG-GAIVNTASVAGLGAA-------- 151 (253)
T ss_pred HhCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCC-cEEEEECchhhccCC--------
Confidence 67999999997422 22344566789999999988776543 3343 389999998776532
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCCCCCh-HHHHHHHHHcCCceEEEeeCCCCcce
Q 012176 261 HRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMA-YFFFTKDILQGKTIDVYKTQDDREVA 336 (469)
Q Consensus 261 ~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~ 336 (469)
.....|+.+|.+.+.+++.++.++ |+++++++||.|-.+....... .......+....+.
T Consensus 152 ----~~~~~Y~~sKaa~~~~~~~la~e~~~~~i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~------------ 215 (253)
T PRK06172 152 ----PKMSIYAASKHAVIGLTKSAAIEYAKKGIRVNAVCPAVIDTDMFRRAYEADPRKAEFAAAMHPV------------ 215 (253)
T ss_pred ----CCCchhHHHHHHHHHHHHHHHHHhcccCeEEEEEEeCCccChhhhhhcccChHHHHHHhccCCC------------
Confidence 245679999999999999998775 7999999999987764321100 01111222111111
Q ss_pred EecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCC
Q 012176 337 RDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTS 374 (469)
Q Consensus 337 ~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~ 374 (469)
..+..++|+++.++.++..... ...|+++++.++.
T Consensus 216 ~~~~~p~~ia~~~~~l~~~~~~---~~~G~~i~~dgg~ 250 (253)
T PRK06172 216 GRIGKVEEVASAVLYLCSDGAS---FTTGHALMVDGGA 250 (253)
T ss_pred CCccCHHHHHHHHHHHhCcccc---CcCCcEEEECCCc
Confidence 1246789999999998865432 3456888888764
|
|
| >PRK07097 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.1e-17 Score=162.02 Aligned_cols=226 Identities=13% Similarity=0.081 Sum_probs=159.4
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhc-cCCeEEEEecCCCHHHHHHhhccC--
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQ-KHQVFIVEGDLNDAPLLTKLFDVV-- 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~v~~v~~Dl~d~~~l~~~~~~~-- 192 (469)
..+++++||||+|+||.+++++|+++|++|++++|..+ ...+....... ..++.++.+|++|.++++++++..
T Consensus 8 ~~~k~~lItGa~~~iG~~ia~~l~~~G~~vv~~~~~~~----~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 83 (265)
T PRK07097 8 LKGKIALITGASYGIGFAIAKAYAKAGATIVFNDINQE----LVDKGLAAYRELGIEAHGYVCDVTDEDGVQAMVSQIEK 83 (265)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHH----HHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHH
Confidence 56789999999999999999999999999999988543 22222222211 236889999999999999888752
Q ss_pred ---CccEEEEcccccCh----hhhccChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEEcCcc-ccCCCCCCCCCCC
Q 012176 193 ---PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCKS----VNPQPSIVWASSSS-VYGLNTQVPFSES 260 (469)
Q Consensus 193 ---~~d~Vih~Aa~~~~----~~~~~~~~~~~~~Nv~~~~~ll~aa~~----~~~~~~~V~~SS~~-vyg~~~~~~~~E~ 260 (469)
++|+||||||.... ....++.+.++++|+.++..+++++.. .+. ++||++||.. .++.
T Consensus 84 ~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~-g~iv~isS~~~~~~~--------- 153 (265)
T PRK07097 84 EVGVIDILVNNAGIIKRIPMLEMSAEDFRQVIDIDLNAPFIVSKAVIPSMIKKGH-GKIINICSMMSELGR--------- 153 (265)
T ss_pred hCCCCCEEEECCCCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCC-cEEEEEcCccccCCC---------
Confidence 57999999997543 223445567889999999988877543 343 3899999954 3321
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCCCCCh------HHHHHHHHHcCCceEEEeeCC
Q 012176 261 HRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMA------YFFFTKDILQGKTIDVYKTQD 331 (469)
Q Consensus 261 ~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~~~~~------~~~~~~~~~~g~~~~~~~~~~ 331 (469)
.+...|+.+|.+.+.+++.++.++ |++++.|+||.|.++....... ...+...+....+
T Consensus 154 ----~~~~~Y~~sKaal~~l~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 221 (265)
T PRK07097 154 ----ETVSAYAAAKGGLKMLTKNIASEYGEANIQCNGIGPGYIATPQTAPLRELQADGSRHPFDQFIIAKTP-------- 221 (265)
T ss_pred ----CCCccHHHHHHHHHHHHHHHHHHhhhcCceEEEEEeccccccchhhhhhccccccchhHHHHHHhcCC--------
Confidence 235679999999999999999875 8999999999998874322100 0111111221111
Q ss_pred CCcceEecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCC
Q 012176 332 DREVARDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTS 374 (469)
Q Consensus 332 ~~~~~~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~ 374 (469)
...+...+|+|..++.++..... ...|+++.+.++.
T Consensus 222 ----~~~~~~~~dva~~~~~l~~~~~~---~~~g~~~~~~gg~ 257 (265)
T PRK07097 222 ----AARWGDPEDLAGPAVFLASDASN---FVNGHILYVDGGI 257 (265)
T ss_pred ----ccCCcCHHHHHHHHHHHhCcccC---CCCCCEEEECCCc
Confidence 11255689999999999876422 3345777777654
|
|
| >PRK08936 glucose-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=7.6e-18 Score=162.61 Aligned_cols=229 Identities=12% Similarity=0.054 Sum_probs=155.8
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhh-ccCCeEEEEecCCCHHHHHHhhccC--
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLL-QKHQVFIVEGDLNDAPLLTKLFDVV-- 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~v~~v~~Dl~d~~~l~~~~~~~-- 192 (469)
.++++++||||+|+||.++++.|+++|+.|+++.|.... .......... ...++.++.+|++|.+++.++++..
T Consensus 5 ~~~k~~lItGa~~gIG~~ia~~l~~~G~~vvi~~~~~~~---~~~~~~~~l~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~ 81 (261)
T PRK08936 5 LEGKVVVITGGSTGLGRAMAVRFGKEKAKVVINYRSDEE---EANDVAEEIKKAGGEAIAVKGDVTVESDVVNLIQTAVK 81 (261)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCCHH---HHHHHHHHHHHcCCeEEEEEecCCCHHHHHHHHHHHHH
Confidence 567899999999999999999999999999988874421 1111111111 1346788999999999988877643
Q ss_pred ---CccEEEEcccccChh----hhccChHHHHHHHHHHHHHHHHH----HHhcCCCCeEEEEcCccccCCCCCCCCCCCC
Q 012176 193 ---PFTHVLHLAAQAGVR----YAMQNPQSYVASNIAGFVNLLEV----CKSVNPQPSIVWASSSSVYGLNTQVPFSESH 261 (469)
Q Consensus 193 ---~~d~Vih~Aa~~~~~----~~~~~~~~~~~~Nv~~~~~ll~a----a~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~ 261 (469)
++|++|||||..... ...++.+..+++|+.++..++++ +++.+..++||++||...+.+.
T Consensus 82 ~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~l~~~~~~~~~g~iv~~sS~~~~~~~--------- 152 (261)
T PRK08936 82 EFGTLDVMINNAGIENAVPSHEMSLEDWNKVINTNLTGAFLGSREAIKYFVEHDIKGNIINMSSVHEQIPW--------- 152 (261)
T ss_pred HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEEccccccCCC---------
Confidence 579999999974432 12344557889998887765554 4555544589999996543211
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceEe
Q 012176 262 RTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARD 338 (469)
Q Consensus 262 ~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 338 (469)
.+...|+.+|.+.+.+.+.++.++ |+++++|+||.|..+........+.....+....++ ..
T Consensus 153 ---~~~~~Y~~sKaa~~~~~~~la~e~~~~gi~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~~~~~------------~~ 217 (261)
T PRK08936 153 ---PLFVHYAASKGGVKLMTETLAMEYAPKGIRVNNIGPGAINTPINAEKFADPKQRADVESMIPM------------GY 217 (261)
T ss_pred ---CCCcccHHHHHHHHHHHHHHHHHHhhcCeEEEEEEECcCCCCccccccCCHHHHHHHHhcCCC------------CC
Confidence 345679999999999988887664 899999999999887533211111222222222221 13
Q ss_pred cccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCC
Q 012176 339 FTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTS 374 (469)
Q Consensus 339 ~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~ 374 (469)
+...+|+++.++.++..... ...|..+.+.++.
T Consensus 218 ~~~~~~va~~~~~l~s~~~~---~~~G~~i~~d~g~ 250 (261)
T PRK08936 218 IGKPEEIAAVAAWLASSEAS---YVTGITLFADGGM 250 (261)
T ss_pred CcCHHHHHHHHHHHcCcccC---CccCcEEEECCCc
Confidence 56689999999998765432 2344666666553
|
|
| >PRK07825 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=4.4e-18 Score=165.34 Aligned_cols=198 Identities=18% Similarity=0.082 Sum_probs=145.5
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccC---
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~--- 192 (469)
.++++|+||||+|+||++++++|+++|++|++++|+.+ ........ + ..+.++.+|++|+++++++++.+
T Consensus 3 ~~~~~ilVtGasggiG~~la~~l~~~G~~v~~~~r~~~----~~~~~~~~-~--~~~~~~~~D~~~~~~~~~~~~~~~~~ 75 (273)
T PRK07825 3 LRGKVVAITGGARGIGLATARALAALGARVAIGDLDEA----LAKETAAE-L--GLVVGGPLDVTDPASFAAFLDAVEAD 75 (273)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEECCHH----HHHHHHHH-h--ccceEEEccCCCHHHHHHHHHHHHHH
Confidence 45789999999999999999999999999999998432 11111111 1 15788999999999988777653
Q ss_pred --CccEEEEcccccChhh----hccChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEEcCccccCCCCCCCCCCCCC
Q 012176 193 --PFTHVLHLAAQAGVRY----AMQNPQSYVASNIAGFVNLLEVCK----SVNPQPSIVWASSSSVYGLNTQVPFSESHR 262 (469)
Q Consensus 193 --~~d~Vih~Aa~~~~~~----~~~~~~~~~~~Nv~~~~~ll~aa~----~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~ 262 (469)
++|++|||||...... ..+..+.++++|+.++..+++++. +.+.. +||++||.+.+.+.
T Consensus 76 ~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~g-~iv~isS~~~~~~~---------- 144 (273)
T PRK07825 76 LGPIDVLVNNAGVMPVGPFLDEPDAVTRRILDVNVYGVILGSKLAAPRMVPRGRG-HVVNVASLAGKIPV---------- 144 (273)
T ss_pred cCCCCEEEECCCcCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-EEEEEcCccccCCC----------
Confidence 5799999999743321 223445688999999888887654 44544 99999997665322
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceEec
Q 012176 263 TDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDF 339 (469)
Q Consensus 263 ~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 339 (469)
.....|+.+|.+.+.+.+.++.++ |+++++|+||.+..+... +.+ ......+
T Consensus 145 --~~~~~Y~asKaa~~~~~~~l~~el~~~gi~v~~v~Pg~v~t~~~~--------------~~~---------~~~~~~~ 199 (273)
T PRK07825 145 --PGMATYCASKHAVVGFTDAARLELRGTGVHVSVVLPSFVNTELIA--------------GTG---------GAKGFKN 199 (273)
T ss_pred --CCCcchHHHHHHHHHHHHHHHHHhhccCcEEEEEeCCcCcchhhc--------------ccc---------cccCCCC
Confidence 345679999999998888877653 899999999998654211 100 1112346
Q ss_pred ccHHHHHHHHHHHhccC
Q 012176 340 TYIDDVVKGCVGATGSG 356 (469)
Q Consensus 340 v~v~Dva~~~~~~~~~~ 356 (469)
+.++|+|+.++.++.++
T Consensus 200 ~~~~~va~~~~~~l~~~ 216 (273)
T PRK07825 200 VEPEDVAAAIVGTVAKP 216 (273)
T ss_pred CCHHHHHHHHHHHHhCC
Confidence 88999999999999876
|
|
| >PRK06197 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=9.3e-18 Score=165.96 Aligned_cols=189 Identities=16% Similarity=0.062 Sum_probs=132.3
Q ss_pred CCCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccC-
Q 012176 114 RRPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV- 192 (469)
Q Consensus 114 ~~~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~- 192 (469)
++..+|+|+||||+|+||.+++++|+++|++|++++|+.+.......... .......+.++.+|+.|.++++++++..
T Consensus 12 ~~~~~k~vlItGas~gIG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~l~-~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~ 90 (306)
T PRK06197 12 PDQSGRVAVVTGANTGLGYETAAALAAKGAHVVLAVRNLDKGKAAAARIT-AATPGADVTLQELDLTSLASVRAAADALR 90 (306)
T ss_pred ccCCCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH-HhCCCCceEEEECCCCCHHHHHHHHHHHH
Confidence 34678999999999999999999999999999999985432111111111 1111246889999999999998887653
Q ss_pred ----CccEEEEcccccChh--hhccChHHHHHHHHHH----HHHHHHHHHhcCCCCeEEEEcCccccCCCCCCCCCCCCC
Q 012176 193 ----PFTHVLHLAAQAGVR--YAMQNPQSYVASNIAG----FVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHR 262 (469)
Q Consensus 193 ----~~d~Vih~Aa~~~~~--~~~~~~~~~~~~Nv~~----~~~ll~aa~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~ 262 (469)
++|+||||||..... ...++.+..+++|+.+ +..+++.+++.+.. +||++||.+.+.... .++++...
T Consensus 91 ~~~~~iD~li~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~ll~~l~~~~~~-~iV~vSS~~~~~~~~-~~~~~~~~ 168 (306)
T PRK06197 91 AAYPRIDLLINNAGVMYTPKQTTADGFELQFGTNHLGHFALTGLLLDRLLPVPGS-RVVTVSSGGHRIRAA-IHFDDLQW 168 (306)
T ss_pred hhCCCCCEEEECCccccCCCccCCCCcchhhhhhhHHHHHHHHHHHHHHhhCCCC-EEEEECCHHHhccCC-CCccccCc
Confidence 579999999974332 2334567789999999 55556666655544 999999976543111 12222111
Q ss_pred --CCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEE--eecceecCCC
Q 012176 263 --TDQPASLYAATKKAGEEIAHTYNHIY---GLALTGL--RFFTVYGPWG 305 (469)
Q Consensus 263 --~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~il--Rp~~v~Gp~~ 305 (469)
...+...|+.+|++.+.+.+.++.++ |++++++ .||.|..+..
T Consensus 169 ~~~~~~~~~Y~~SK~a~~~~~~~la~~l~~~~i~v~~v~~~PG~v~T~~~ 218 (306)
T PRK06197 169 ERRYNRVAAYGQSKLANLLFTYELQRRLAAAGATTIAVAAHPGVSNTELA 218 (306)
T ss_pred ccCCCcHHHHHHHHHHHHHHHHHHHHHhhcCCCCeEEEEeCCCcccCccc
Confidence 11456789999999999999988765 6666555 6999877643
|
|
| >PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=4.2e-18 Score=162.51 Aligned_cols=225 Identities=13% Similarity=0.066 Sum_probs=157.9
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEE-eCCCCCCChhHHHHHHHhh-ccCCeEEEEecCCCHHHHHHhhccC-
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGL-DNFNSYYDPSLKRARQKLL-QKHQVFIVEGDLNDAPLLTKLFDVV- 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~-~r~~~~~~~~~~~~~~~~~-~~~~v~~v~~Dl~d~~~l~~~~~~~- 192 (469)
..+++|+||||+|+||.++++.|+++|++|+++ +|.... ......... ....+.++.+|++|++.+.++++..
T Consensus 3 ~~~~~ilI~Gasg~iG~~la~~l~~~g~~v~~~~~r~~~~----~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 78 (247)
T PRK05565 3 LMGKVAIVTGASGGIGRAIAELLAKEGAKVVIAYDINEEA----AQELLEEIKEEGGDAIAVKADVSSEEDVENLVEQIV 78 (247)
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCCHHH----HHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHH
Confidence 456799999999999999999999999999998 875331 111111111 1336889999999999998888743
Q ss_pred ----CccEEEEcccccChh----hhccChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEEcCccccCCCCCCCCCCC
Q 012176 193 ----PFTHVLHLAAQAGVR----YAMQNPQSYVASNIAGFVNLLEVCKS----VNPQPSIVWASSSSVYGLNTQVPFSES 260 (469)
Q Consensus 193 ----~~d~Vih~Aa~~~~~----~~~~~~~~~~~~Nv~~~~~ll~aa~~----~~~~~~~V~~SS~~vyg~~~~~~~~E~ 260 (469)
++|+|||++|..... ...+..+..+++|+.++.++++++.. .+.. +||++||...+.+.
T Consensus 79 ~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~-~~v~~sS~~~~~~~-------- 149 (247)
T PRK05565 79 EKFGKIDILVNNAGISNFGLVTDMTDEEWDRVIDVNLTGVMLLTRYALPYMIKRKSG-VIVNISSIWGLIGA-------- 149 (247)
T ss_pred HHhCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCc-EEEEECCHhhccCC--------
Confidence 579999999975321 22344567899999998888887654 3333 79999997654322
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceE
Q 012176 261 HRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVAR 337 (469)
Q Consensus 261 ~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 337 (469)
.....|+.+|.+.+.+++.++.++ |++++++|||.+..+...... ......+... ....
T Consensus 150 ----~~~~~y~~sK~a~~~~~~~~~~~~~~~gi~~~~v~pg~v~t~~~~~~~--~~~~~~~~~~------------~~~~ 211 (247)
T PRK05565 150 ----SCEVLYSASKGAVNAFTKALAKELAPSGIRVNAVAPGAIDTEMWSSFS--EEDKEGLAEE------------IPLG 211 (247)
T ss_pred ----CCccHHHHHHHHHHHHHHHHHHHHHHcCeEEEEEEECCccCccccccC--hHHHHHHHhc------------CCCC
Confidence 234579999999999988887654 899999999999776443211 1111111111 0112
Q ss_pred ecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCC
Q 012176 338 DFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTS 374 (469)
Q Consensus 338 ~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~ 374 (469)
.+..++|+++.++.++..... ...|+++++.++.
T Consensus 212 ~~~~~~~va~~~~~l~~~~~~---~~~g~~~~~~~~~ 245 (247)
T PRK05565 212 RLGKPEEIAKVVLFLASDDAS---YITGQIITVDGGW 245 (247)
T ss_pred CCCCHHHHHHHHHHHcCCccC---CccCcEEEecCCc
Confidence 356889999999999876532 3456888887763
|
|
| >PRK05872 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.7e-18 Score=168.08 Aligned_cols=215 Identities=17% Similarity=0.126 Sum_probs=151.6
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccC---
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~--- 192 (469)
.++++|+||||+|+||.++++.|.++|++|++++|+.+ .+............+..+.+|++|.++++++++.+
T Consensus 7 l~gk~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~----~l~~~~~~l~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 82 (296)
T PRK05872 7 LAGKVVVVTGAARGIGAELARRLHARGAKLALVDLEEA----ELAALAAELGGDDRVLTVVADVTDLAAMQAAAEEAVER 82 (296)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHH----HHHHHHHHhcCCCcEEEEEecCCCHHHHHHHHHHHHHH
Confidence 56789999999999999999999999999999998543 22222222222335667779999999988887653
Q ss_pred --CccEEEEcccccChh----hhccChHHHHHHHHHHHHHHHHHHHhcC--CCCeEEEEcCccccCCCCCCCCCCCCCCC
Q 012176 193 --PFTHVLHLAAQAGVR----YAMQNPQSYVASNIAGFVNLLEVCKSVN--PQPSIVWASSSSVYGLNTQVPFSESHRTD 264 (469)
Q Consensus 193 --~~d~Vih~Aa~~~~~----~~~~~~~~~~~~Nv~~~~~ll~aa~~~~--~~~~~V~~SS~~vyg~~~~~~~~E~~~~~ 264 (469)
++|+||||||..... ...++.+..+++|+.++.++++++...- ..++||++||.+.+.+.
T Consensus 83 ~g~id~vI~nAG~~~~~~~~~~~~~~~~~~~~vn~~g~~~l~~~~~~~~~~~~g~iv~isS~~~~~~~------------ 150 (296)
T PRK05872 83 FGGIDVVVANAGIASGGSVAQVDPDAFRRVIDVNLLGVFHTVRATLPALIERRGYVLQVSSLAAFAAA------------ 150 (296)
T ss_pred cCCCCEEEECCCcCCCcCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCEEEEEeCHhhcCCC------------
Confidence 579999999974321 2234456789999999999999875421 12489999998766432
Q ss_pred CCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceEeccc
Q 012176 265 QPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTY 341 (469)
Q Consensus 265 ~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~ 341 (469)
.....|+.+|.+.+.+++.++.+ .|+.+++++||.+..+..............+....+.+ ...++.
T Consensus 151 ~~~~~Y~asKaal~~~~~~l~~e~~~~gi~v~~v~Pg~v~T~~~~~~~~~~~~~~~~~~~~~~p----------~~~~~~ 220 (296)
T PRK05872 151 PGMAAYCASKAGVEAFANALRLEVAHHGVTVGSAYLSWIDTDLVRDADADLPAFRELRARLPWP----------LRRTTS 220 (296)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHCcEEEEEecCcccchhhhhccccchhHHHHHhhCCCc----------ccCCCC
Confidence 23467999999999999988754 48999999999998764321110001112222211111 123567
Q ss_pred HHHHHHHHHHHhccC
Q 012176 342 IDDVVKGCVGATGSG 356 (469)
Q Consensus 342 v~Dva~~~~~~~~~~ 356 (469)
++|++++++.++...
T Consensus 221 ~~~va~~i~~~~~~~ 235 (296)
T PRK05872 221 VEKCAAAFVDGIERR 235 (296)
T ss_pred HHHHHHHHHHHHhcC
Confidence 999999999998765
|
|
| >PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.80 E-value=8.4e-18 Score=161.60 Aligned_cols=226 Identities=12% Similarity=0.074 Sum_probs=157.3
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccC---
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~--- 192 (469)
..+++++||||+|+||.+++++|+++|++|+++++... ....+.... ....+..+.+|++|.++++++++..
T Consensus 8 l~~k~~lItG~~~gIG~a~a~~l~~~G~~vv~~~~~~~---~~~~~~~~~--~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 82 (253)
T PRK08993 8 LEGKVAVVTGCDTGLGQGMALGLAEAGCDIVGINIVEP---TETIEQVTA--LGRRFLSLTADLRKIDGIPALLERAVAE 82 (253)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEecCcch---HHHHHHHHh--cCCeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 56789999999999999999999999999998876431 111111111 1236788999999999998888753
Q ss_pred --CccEEEEcccccCh----hhhccChHHHHHHHHHHHHHHHHHHHhc----CCCCeEEEEcCccccCCCCCCCCCCCCC
Q 012176 193 --PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCKSV----NPQPSIVWASSSSVYGLNTQVPFSESHR 262 (469)
Q Consensus 193 --~~d~Vih~Aa~~~~----~~~~~~~~~~~~~Nv~~~~~ll~aa~~~----~~~~~~V~~SS~~vyg~~~~~~~~E~~~ 262 (469)
++|+||||||.... +...++.+..+++|+.++.++++++... +..+++|++||...+.+.
T Consensus 83 ~~~~D~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~~~---------- 152 (253)
T PRK08993 83 FGHIDILVNNAGLIRREDAIEFSEKDWDDVMNLNIKSVFFMSQAAAKHFIAQGNGGKIINIASMLSFQGG---------- 152 (253)
T ss_pred hCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCeEEEEECchhhccCC----------
Confidence 67999999997432 2234566789999999999999886532 323489999998776533
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceEec
Q 012176 263 TDQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDF 339 (469)
Q Consensus 263 ~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 339 (469)
.....|+.+|.+.|.+++.++.+ .|++++.++||.+-.+....-.......+.+...-+ ...+
T Consensus 153 --~~~~~Y~~sKaa~~~~~~~la~e~~~~gi~v~~v~pG~v~T~~~~~~~~~~~~~~~~~~~~p------------~~r~ 218 (253)
T PRK08993 153 --IRVPSYTASKSGVMGVTRLMANEWAKHNINVNAIAPGYMATNNTQQLRADEQRSAEILDRIP------------AGRW 218 (253)
T ss_pred --CCCcchHHHHHHHHHHHHHHHHHhhhhCeEEEEEeeCcccCcchhhhccchHHHHHHHhcCC------------CCCC
Confidence 22357999999999999999876 489999999999987632210000011111211111 0125
Q ss_pred ccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCC
Q 012176 340 TYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNT 373 (469)
Q Consensus 340 v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~ 373 (469)
...+|++.+++.++..... ...|.++.+.++
T Consensus 219 ~~p~eva~~~~~l~s~~~~---~~~G~~~~~dgg 249 (253)
T PRK08993 219 GLPSDLMGPVVFLASSASD---YINGYTIAVDGG 249 (253)
T ss_pred cCHHHHHHHHHHHhCcccc---CccCcEEEECCC
Confidence 6689999999998865432 234567766554
|
|
| >PRK07576 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=4.3e-18 Score=164.79 Aligned_cols=230 Identities=15% Similarity=0.120 Sum_probs=157.1
Q ss_pred CCCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhh-ccCCeEEEEecCCCHHHHHHhhccC
Q 012176 114 RRPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLL-QKHQVFIVEGDLNDAPLLTKLFDVV 192 (469)
Q Consensus 114 ~~~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~v~~v~~Dl~d~~~l~~~~~~~ 192 (469)
.+.++++|+||||+|+||.+++++|+++|++|++++|+.+ .......... ...++.++.+|++|+++++++++.+
T Consensus 5 ~~~~~k~ilItGasggIG~~la~~l~~~G~~V~~~~r~~~----~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~ 80 (264)
T PRK07576 5 FDFAGKNVVVVGGTSGINLGIAQAFARAGANVAVASRSQE----KVDAAVAQLQQAGPEGLGVSADVRDYAAVEAAFAQI 80 (264)
T ss_pred ccCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHH----HHHHHHHHHHHhCCceEEEECCCCCHHHHHHHHHHH
Confidence 3467889999999999999999999999999999998543 1111111111 1236788999999999998888764
Q ss_pred -----CccEEEEcccccCh----hhhccChHHHHHHHHHHHHHHHHHHHhc--CCCCeEEEEcCccccCCCCCCCCCCCC
Q 012176 193 -----PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCKSV--NPQPSIVWASSSSVYGLNTQVPFSESH 261 (469)
Q Consensus 193 -----~~d~Vih~Aa~~~~----~~~~~~~~~~~~~Nv~~~~~ll~aa~~~--~~~~~~V~~SS~~vyg~~~~~~~~E~~ 261 (469)
++|+||||||.... ....++.+..+++|+.++.++++++... ...++||++||...+.+.
T Consensus 81 ~~~~~~iD~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~l~~~~g~iv~iss~~~~~~~--------- 151 (264)
T PRK07576 81 ADEFGPIDVLVSGAAGNFPAPAAGMSANGFKTVVDIDLLGTFNVLKAAYPLLRRPGASIIQISAPQAFVPM--------- 151 (264)
T ss_pred HHHcCCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCEEEEECChhhccCC---------
Confidence 57999999985321 1223445678899999999999987642 112489999997654221
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCCCCChH-HHHHHHHHcCCceEEEeeCCCCcceE
Q 012176 262 RTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAY-FFFTKDILQGKTIDVYKTQDDREVAR 337 (469)
Q Consensus 262 ~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~ 337 (469)
.....|+.+|.+.|.+++.++.++ |+++++++||.+.+........- ..+....... .+ ..
T Consensus 152 ---~~~~~Y~asK~a~~~l~~~la~e~~~~gi~v~~v~pg~~~~t~~~~~~~~~~~~~~~~~~~--~~----------~~ 216 (264)
T PRK07576 152 ---PMQAHVCAAKAGVDMLTRTLALEWGPEGIRVNSIVPGPIAGTEGMARLAPSPELQAAVAQS--VP----------LK 216 (264)
T ss_pred ---CCccHHHHHHHHHHHHHHHHHHHhhhcCeEEEEEecccccCcHHHhhcccCHHHHHHHHhc--CC----------CC
Confidence 345679999999999999988664 79999999999875321100000 0111111111 11 12
Q ss_pred ecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCC
Q 012176 338 DFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTS 374 (469)
Q Consensus 338 ~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~ 374 (469)
.+...+|+|++++.++..+.. ...|..+.+.++.
T Consensus 217 ~~~~~~dva~~~~~l~~~~~~---~~~G~~~~~~gg~ 250 (264)
T PRK07576 217 RNGTKQDIANAALFLASDMAS---YITGVVLPVDGGW 250 (264)
T ss_pred CCCCHHHHHHHHHHHcChhhc---CccCCEEEECCCc
Confidence 356789999999999875422 2345677666653
|
|
| >PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=4.3e-18 Score=164.29 Aligned_cols=227 Identities=11% Similarity=0.047 Sum_probs=152.6
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhh--ccCCeEEEEecCCCHHHHHHhhccC-
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLL--QKHQVFIVEGDLNDAPLLTKLFDVV- 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~v~~v~~Dl~d~~~l~~~~~~~- 192 (469)
.++|+|+||||+++||++++++|+++|++|+++.|... +.......... ....+.++.+|++|+++++++++..
T Consensus 6 l~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 82 (260)
T PRK08416 6 MKGKTLVISGGTRGIGKAIVYEFAQSGVNIAFTYNSNV---EEANKIAEDLEQKYGIKAKAYPLNILEPETYKELFKKID 82 (260)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCH---HHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHH
Confidence 57899999999999999999999999999998876432 11111111111 1236889999999999998888753
Q ss_pred ----CccEEEEcccccCh----------hhhccChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEEcCccccCCCCC
Q 012176 193 ----PFTHVLHLAAQAGV----------RYAMQNPQSYVASNIAGFVNLLEVCK----SVNPQPSIVWASSSSVYGLNTQ 254 (469)
Q Consensus 193 ----~~d~Vih~Aa~~~~----------~~~~~~~~~~~~~Nv~~~~~ll~aa~----~~~~~~~~V~~SS~~vyg~~~~ 254 (469)
++|++|||||.... ....+.....+++|+.+...+.+++. +.+. ++||++||...+...
T Consensus 83 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~-g~iv~isS~~~~~~~-- 159 (260)
T PRK08416 83 EDFDRVDFFISNAIISGRAVVGGYTKFMRLKPKGLNNIYTATVNAFVVGAQEAAKRMEKVGG-GSIISLSSTGNLVYI-- 159 (260)
T ss_pred HhcCCccEEEECccccccccccccCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHhhhccCC-EEEEEEeccccccCC--
Confidence 57999999985321 11123445678888888777666543 3333 389999996543211
Q ss_pred CCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCC
Q 012176 255 VPFSESHRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQD 331 (469)
Q Consensus 255 ~~~~E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 331 (469)
.....|+.+|.+.+.+++.++.++ |++++.|+||.+-.+..........+........++
T Consensus 160 ----------~~~~~Y~asK~a~~~~~~~la~el~~~gi~v~~v~PG~i~T~~~~~~~~~~~~~~~~~~~~~~------- 222 (260)
T PRK08416 160 ----------ENYAGHGTSKAAVETMVKYAATELGEKNIRVNAVSGGPIDTDALKAFTNYEEVKAKTEELSPL------- 222 (260)
T ss_pred ----------CCcccchhhHHHHHHHHHHHHHHhhhhCeEEEEEeeCcccChhhhhccCCHHHHHHHHhcCCC-------
Confidence 234579999999999999999875 899999999998665211100001121222222221
Q ss_pred CCcceEecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCC
Q 012176 332 DREVARDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNT 373 (469)
Q Consensus 332 ~~~~~~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~ 373 (469)
..+..++|++.+++.++..... -..|+++.+.++
T Consensus 223 -----~r~~~p~~va~~~~~l~~~~~~---~~~G~~i~vdgg 256 (260)
T PRK08416 223 -----NRMGQPEDLAGACLFLCSEKAS---WLTGQTIVVDGG 256 (260)
T ss_pred -----CCCCCHHHHHHHHHHHcChhhh---cccCcEEEEcCC
Confidence 1256789999999998765422 234577777665
|
|
| >PRK07109 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=4.3e-18 Score=170.31 Aligned_cols=215 Identities=17% Similarity=0.120 Sum_probs=152.6
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhh-ccCCeEEEEecCCCHHHHHHhhccC--
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLL-QKHQVFIVEGDLNDAPLLTKLFDVV-- 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~v~~v~~Dl~d~~~l~~~~~~~-- 192 (469)
.++++|+||||+|+||.+++++|+++|++|++++|+.+. +........ ...++.++.+|++|.++++++++.+
T Consensus 6 l~~k~vlITGas~gIG~~la~~la~~G~~Vvl~~R~~~~----l~~~~~~l~~~g~~~~~v~~Dv~d~~~v~~~~~~~~~ 81 (334)
T PRK07109 6 IGRQVVVITGASAGVGRATARAFARRGAKVVLLARGEEG----LEALAAEIRAAGGEALAVVADVADAEAVQAAADRAEE 81 (334)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHH----HHHHHHHHHHcCCcEEEEEecCCCHHHHHHHHHHHHH
Confidence 567899999999999999999999999999999985432 222222211 1346889999999999999887643
Q ss_pred ---CccEEEEcccccCh----hhhccChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEEcCccccCCCCCCCCCCCC
Q 012176 193 ---PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVC----KSVNPQPSIVWASSSSVYGLNTQVPFSESH 261 (469)
Q Consensus 193 ---~~d~Vih~Aa~~~~----~~~~~~~~~~~~~Nv~~~~~ll~aa----~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~ 261 (469)
++|+||||||.... ....++.+..+++|+.+...+.+++ ++.+. ++||++||...+...
T Consensus 82 ~~g~iD~lInnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~~~~~~~-g~iV~isS~~~~~~~--------- 151 (334)
T PRK07109 82 ELGPIDTWVNNAMVTVFGPFEDVTPEEFRRVTEVTYLGVVHGTLAALRHMRPRDR-GAIIQVGSALAYRSI--------- 151 (334)
T ss_pred HCCCCCEEEECCCcCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCC-cEEEEeCChhhccCC---------
Confidence 57999999996432 1223445678899988877765554 44444 389999998877532
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHh-----CCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcce
Q 012176 262 RTDQPASLYAATKKAGEEIAHTYNHIY-----GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVA 336 (469)
Q Consensus 262 ~~~~p~~~Y~~sK~~~E~~~~~~~~~~-----gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 336 (469)
.....|+.+|.+.+.+++.++.++ ++++++|+||.|.+|... .. ....... ....
T Consensus 152 ---~~~~~Y~asK~a~~~~~~~l~~el~~~~~~I~v~~v~Pg~v~T~~~~------~~-~~~~~~~----------~~~~ 211 (334)
T PRK07109 152 ---PLQSAYCAAKHAIRGFTDSLRCELLHDGSPVSVTMVQPPAVNTPQFD------WA-RSRLPVE----------PQPV 211 (334)
T ss_pred ---CcchHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEeCCCccCchhh------hh-hhhcccc----------ccCC
Confidence 234679999999999988887653 699999999999776221 11 1111110 1112
Q ss_pred EecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCC
Q 012176 337 RDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGN 372 (469)
Q Consensus 337 ~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~ 372 (469)
..+..++|+|++++.++.++. +.+.++.
T Consensus 212 ~~~~~pe~vA~~i~~~~~~~~--------~~~~vg~ 239 (334)
T PRK07109 212 PPIYQPEVVADAILYAAEHPR--------RELWVGG 239 (334)
T ss_pred CCCCCHHHHHHHHHHHHhCCC--------cEEEeCc
Confidence 245689999999999998762 4565665
|
|
| >PRK06947 glucose-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=5.8e-18 Score=161.94 Aligned_cols=225 Identities=15% Similarity=0.099 Sum_probs=150.6
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhh-ccCCeEEEEecCCCHHHHHHhhccC----
Q 012176 118 GMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLL-QKHQVFIVEGDLNDAPLLTKLFDVV---- 192 (469)
Q Consensus 118 ~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~v~~v~~Dl~d~~~l~~~~~~~---- 192 (469)
+|+|+||||+|+||..+++.|+++|++|+++.+.+. +.......... ...++.++.+|++|.++++++++..
T Consensus 2 ~k~ilItGas~giG~~la~~l~~~g~~v~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 78 (248)
T PRK06947 2 RKVVLITGASRGIGRATAVLAAARGWSVGINYARDA---AAAEETADAVRAAGGRACVVAGDVANEADVIAMFDAVQSAF 78 (248)
T ss_pred CcEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCCH---HHHHHHHHHHHhcCCcEEEEEeccCCHHHHHHHHHHHHHhc
Confidence 468999999999999999999999999987754322 11111111111 1236889999999999988877643
Q ss_pred -CccEEEEcccccCh-----hhhccChHHHHHHHHHHHHHHHHHHH-hcCC-----CCeEEEEcCccc-cCCCCCCCCCC
Q 012176 193 -PFTHVLHLAAQAGV-----RYAMQNPQSYVASNIAGFVNLLEVCK-SVNP-----QPSIVWASSSSV-YGLNTQVPFSE 259 (469)
Q Consensus 193 -~~d~Vih~Aa~~~~-----~~~~~~~~~~~~~Nv~~~~~ll~aa~-~~~~-----~~~~V~~SS~~v-yg~~~~~~~~E 259 (469)
++|+||||||.... +...++.+..+++|+.++..+++++. .... .++||++||.+. ++..
T Consensus 79 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~ii~~sS~~~~~~~~------- 151 (248)
T PRK06947 79 GRLDALVNNAGIVAPSMPLADMDAARLRRMFDTNVLGAYLCAREAARRLSTDRGGRGGAIVNVSSIASRLGSP------- 151 (248)
T ss_pred CCCCEEEECCccCCCCCChhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCCCCcEEEEECchhhcCCCC-------
Confidence 57999999997432 12233445679999999988876543 2211 236999999654 3321
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcce
Q 012176 260 SHRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVA 336 (469)
Q Consensus 260 ~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 336 (469)
.....|+.+|.+.+.+++.+++++ |++++++|||.+..|....+.. +..........++
T Consensus 152 -----~~~~~Y~~sK~~~~~~~~~la~~~~~~~i~v~~i~Pg~v~t~~~~~~~~-~~~~~~~~~~~~~------------ 213 (248)
T PRK06947 152 -----NEYVDYAGSKGAVDTLTLGLAKELGPHGVRVNAVRPGLIETEIHASGGQ-PGRAARLGAQTPL------------ 213 (248)
T ss_pred -----CCCcccHhhHHHHHHHHHHHHHHhhhhCcEEEEEeccCcccccccccCC-HHHHHHHhhcCCC------------
Confidence 123469999999999999988765 7999999999999874321111 1111111111111
Q ss_pred EecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCC
Q 012176 337 RDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNT 373 (469)
Q Consensus 337 ~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~ 373 (469)
.-...++|+++.++.++.++.. ...|+++.+.++
T Consensus 214 ~~~~~~e~va~~~~~l~~~~~~---~~~G~~~~~~gg 247 (248)
T PRK06947 214 GRAGEADEVAETIVWLLSDAAS---YVTGALLDVGGG 247 (248)
T ss_pred CCCcCHHHHHHHHHHHcCcccc---CcCCceEeeCCC
Confidence 1135689999999998876532 244577776554
|
|
| >PRK05866 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=6.7e-18 Score=165.95 Aligned_cols=202 Identities=19% Similarity=0.209 Sum_probs=146.8
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhh-ccCCeEEEEecCCCHHHHHHhhccC--
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLL-QKHQVFIVEGDLNDAPLLTKLFDVV-- 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~v~~v~~Dl~d~~~l~~~~~~~-- 192 (469)
.++++|+||||+|+||.++++.|+++|++|++++|+.+. ......... ....+.++.+|++|.+++.++++..
T Consensus 38 ~~~k~vlItGasggIG~~la~~La~~G~~Vi~~~R~~~~----l~~~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~ 113 (293)
T PRK05866 38 LTGKRILLTGASSGIGEAAAEQFARRGATVVAVARREDL----LDAVADRITRAGGDAMAVPCDLSDLDAVDALVADVEK 113 (293)
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHH----HHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHH
Confidence 567899999999999999999999999999999996431 111111111 1235789999999999998888732
Q ss_pred ---CccEEEEcccccChhhh------ccChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEEcCccccCCCCCCCCCC
Q 012176 193 ---PFTHVLHLAAQAGVRYA------MQNPQSYVASNIAGFVNLLEVCK----SVNPQPSIVWASSSSVYGLNTQVPFSE 259 (469)
Q Consensus 193 ---~~d~Vih~Aa~~~~~~~------~~~~~~~~~~Nv~~~~~ll~aa~----~~~~~~~~V~~SS~~vyg~~~~~~~~E 259 (469)
++|+||||||....... .++.+..+++|+.++..+++++. +.+.. +||++||.+++....
T Consensus 114 ~~g~id~li~~AG~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g-~iv~isS~~~~~~~~------ 186 (293)
T PRK05866 114 RIGGVDILINNAGRSIRRPLAESLDRWHDVERTMVLNYYAPLRLIRGLAPGMLERGDG-HIINVATWGVLSEAS------ 186 (293)
T ss_pred HcCCCCEEEECCCCCCCcchhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-EEEEECChhhcCCCC------
Confidence 57999999997433211 12345688999999888887653 45544 999999976653210
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcce
Q 012176 260 SHRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVA 336 (469)
Q Consensus 260 ~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 336 (469)
.....|+.+|++.+.+++.++.++ |+++++++||.|-.+..... . .. .+
T Consensus 187 -----p~~~~Y~asKaal~~l~~~la~e~~~~gI~v~~v~pg~v~T~~~~~~-------------~---~~----~~--- 238 (293)
T PRK05866 187 -----PLFSVYNASKAALSAVSRVIETEWGDRGVHSTTLYYPLVATPMIAPT-------------K---AY----DG--- 238 (293)
T ss_pred -----CCcchHHHHHHHHHHHHHHHHHHhcccCcEEEEEEcCcccCcccccc-------------c---cc----cC---
Confidence 234679999999999999987664 89999999998876532210 0 00 01
Q ss_pred EecccHHHHHHHHHHHhccC
Q 012176 337 RDFTYIDDVVKGCVGATGSG 356 (469)
Q Consensus 337 ~~~v~v~Dva~~~~~~~~~~ 356 (469)
...+..+++|+.++.++++.
T Consensus 239 ~~~~~pe~vA~~~~~~~~~~ 258 (293)
T PRK05866 239 LPALTADEAAEWMVTAARTR 258 (293)
T ss_pred CCCCCHHHHHHHHHHHHhcC
Confidence 12367899999999999865
|
|
| >PRK06101 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=9.5e-18 Score=159.96 Aligned_cols=195 Identities=18% Similarity=0.123 Sum_probs=143.8
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccC--CccE
Q 012176 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--PFTH 196 (469)
Q Consensus 119 ~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~--~~d~ 196 (469)
++|+||||+|+||.+++++|+++|++|++++|+.+ ...... . ...++.++.+|++|.++++++++.. .+|+
T Consensus 2 ~~vlItGas~giG~~la~~L~~~G~~V~~~~r~~~----~~~~~~-~--~~~~~~~~~~D~~~~~~~~~~~~~~~~~~d~ 74 (240)
T PRK06101 2 TAVLITGATSGIGKQLALDYAKQGWQVIACGRNQS----VLDELH-T--QSANIFTLAFDVTDHPGTKAALSQLPFIPEL 74 (240)
T ss_pred cEEEEEcCCcHHHHHHHHHHHhCCCEEEEEECCHH----HHHHHH-H--hcCCCeEEEeeCCCHHHHHHHHHhcccCCCE
Confidence 67999999999999999999999999999999532 111111 1 1236889999999999999998874 4699
Q ss_pred EEEcccccCh-h---hhccChHHHHHHHHHHHHHHHHHHHhcC-CCCeEEEEcCccccCCCCCCCCCCCCCCCCCCChHH
Q 012176 197 VLHLAAQAGV-R---YAMQNPQSYVASNIAGFVNLLEVCKSVN-PQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYA 271 (469)
Q Consensus 197 Vih~Aa~~~~-~---~~~~~~~~~~~~Nv~~~~~ll~aa~~~~-~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y~ 271 (469)
+|||||.... . ...++.+.++++|+.++.++++++...- ...++|++||.....+. .....|+
T Consensus 75 ~i~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~iv~isS~~~~~~~------------~~~~~Y~ 142 (240)
T PRK06101 75 WIFNAGDCEYMDDGKVDATLMARVFNVNVLGVANCIEGIQPHLSCGHRVVIVGSIASELAL------------PRAEAYG 142 (240)
T ss_pred EEEcCcccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCeEEEEechhhccCC------------CCCchhh
Confidence 9999986321 1 1223345789999999999999987531 12379999885432111 2345799
Q ss_pred HHHHHHHHHHHHHHHH---hCCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceEecccHHHHHHH
Q 012176 272 ATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKG 348 (469)
Q Consensus 272 ~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~~ 348 (469)
.+|.+.+.+++.++.+ +|++++++|||.|+++...... ... . ..+..+|+|+.
T Consensus 143 asK~a~~~~~~~l~~e~~~~gi~v~~v~pg~i~t~~~~~~~------------~~~--------~----~~~~~~~~a~~ 198 (240)
T PRK06101 143 ASKAAVAYFARTLQLDLRPKGIEVVTVFPGFVATPLTDKNT------------FAM--------P----MIITVEQASQE 198 (240)
T ss_pred HHHHHHHHHHHHHHHHHHhcCceEEEEeCCcCCCCCcCCCC------------CCC--------C----cccCHHHHHHH
Confidence 9999999999988744 4899999999999987443210 000 0 13578999999
Q ss_pred HHHHhccC
Q 012176 349 CVGATGSG 356 (469)
Q Consensus 349 ~~~~~~~~ 356 (469)
++..++..
T Consensus 199 i~~~i~~~ 206 (240)
T PRK06101 199 IRAQLARG 206 (240)
T ss_pred HHHHHhcC
Confidence 99998875
|
|
| >PRK06057 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.5e-17 Score=159.98 Aligned_cols=222 Identities=15% Similarity=0.099 Sum_probs=152.2
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccC---
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~--- 192 (469)
.++++|+||||+|+||.+++++|+++|++|++++|+.. ........ .+..++.+|++|+++++++++..
T Consensus 5 ~~~~~vlItGasggIG~~~a~~l~~~G~~v~~~~r~~~----~~~~~~~~----~~~~~~~~D~~~~~~~~~~~~~~~~~ 76 (255)
T PRK06057 5 LAGRVAVITGGGSGIGLATARRLAAEGATVVVGDIDPE----AGKAAADE----VGGLFVPTDVTDEDAVNALFDTAAET 76 (255)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHH----HHHHHHHH----cCCcEEEeeCCCHHHHHHHHHHHHHH
Confidence 56789999999999999999999999999999998532 11111111 12367899999999999888753
Q ss_pred --CccEEEEcccccChh------hhccChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEEcCc-cccCCCCCCCCCC
Q 012176 193 --PFTHVLHLAAQAGVR------YAMQNPQSYVASNIAGFVNLLEVCK----SVNPQPSIVWASSS-SVYGLNTQVPFSE 259 (469)
Q Consensus 193 --~~d~Vih~Aa~~~~~------~~~~~~~~~~~~Nv~~~~~ll~aa~----~~~~~~~~V~~SS~-~vyg~~~~~~~~E 259 (469)
++|+|||+||..... ...+..+..+++|+.++..+++++. +.+. +++|++||. ++++..
T Consensus 77 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~-g~iv~~sS~~~~~g~~------- 148 (255)
T PRK06057 77 YGSVDIAFNNAGISPPEDDSILNTGLDAWQRVQDVNLTSVYLCCKAALPHMVRQGK-GSIINTASFVAVMGSA------- 148 (255)
T ss_pred cCCCCEEEECCCcCCCCCCCcccCCHHHHHHHHHHhcHHHHHHHHHHHHHHHHhCC-cEEEEEcchhhccCCC-------
Confidence 579999999874321 1223456789999999988877653 3343 389999985 455431
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCCCCC--hHHHHHHHHHcCCceEEEeeCCCCc
Q 012176 260 SHRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDM--AYFFFTKDILQGKTIDVYKTQDDRE 334 (469)
Q Consensus 260 ~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~~~~--~~~~~~~~~~~g~~~~~~~~~~~~~ 334 (469)
.+...|+.+|++.+.+++.++.++ |++++++|||.+.+|...... ......+.+ . .+.
T Consensus 149 -----~~~~~Y~~sKaal~~~~~~l~~~~~~~gi~v~~i~pg~v~t~~~~~~~~~~~~~~~~~~-~----~~~------- 211 (255)
T PRK06057 149 -----TSQISYTASKGGVLAMSRELGVQFARQGIRVNALCPGPVNTPLLQELFAKDPERAARRL-V----HVP------- 211 (255)
T ss_pred -----CCCcchHHHHHHHHHHHHHHHHHHHhhCcEEEEEeeCCcCCchhhhhccCCHHHHHHHH-h----cCC-------
Confidence 234579999999888888776543 799999999999987533210 001111111 0 011
Q ss_pred ceEecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCC
Q 012176 335 VARDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTS 374 (469)
Q Consensus 335 ~~~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~ 374 (469)
...+..++|+++++..++..... ...++.+.+.++.
T Consensus 212 -~~~~~~~~~~a~~~~~l~~~~~~---~~~g~~~~~~~g~ 247 (255)
T PRK06057 212 -MGRFAEPEEIAAAVAFLASDDAS---FITASTFLVDGGI 247 (255)
T ss_pred -CCCCcCHHHHHHHHHHHhCcccc---CccCcEEEECCCe
Confidence 12478899999998887765432 2345777776653
|
|
| >PRK06949 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=4.5e-18 Score=163.61 Aligned_cols=226 Identities=12% Similarity=0.061 Sum_probs=156.7
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhh-ccCCeEEEEecCCCHHHHHHhhccC--
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLL-QKHQVFIVEGDLNDAPLLTKLFDVV-- 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~v~~v~~Dl~d~~~l~~~~~~~-- 192 (469)
.++|+|+||||+|+||+++++.|+++|++|++++|+.+. ......... ...++.++.+|++|.+++.++++..
T Consensus 7 ~~~k~ilItGasg~IG~~~a~~l~~~G~~Vi~~~r~~~~----~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 82 (258)
T PRK06949 7 LEGKVALVTGASSGLGARFAQVLAQAGAKVVLASRRVER----LKELRAEIEAEGGAAHVVSLDVTDYQSIKAAVAHAET 82 (258)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHH----HHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHH
Confidence 567899999999999999999999999999999985431 111111111 1346889999999999998888753
Q ss_pred ---CccEEEEcccccChh----hhccChHHHHHHHHHHHHHHHHHHHh----cCC-------CCeEEEEcCccccCCCCC
Q 012176 193 ---PFTHVLHLAAQAGVR----YAMQNPQSYVASNIAGFVNLLEVCKS----VNP-------QPSIVWASSSSVYGLNTQ 254 (469)
Q Consensus 193 ---~~d~Vih~Aa~~~~~----~~~~~~~~~~~~Nv~~~~~ll~aa~~----~~~-------~~~~V~~SS~~vyg~~~~ 254 (469)
++|+||||||..... ...++++.++++|+.++..+++++.. ... .+++|++||...+...
T Consensus 83 ~~~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~-- 160 (258)
T PRK06949 83 EAGTIDILVNNSGVSTTQKLVDVTPADFDFVFDTNTRGAFFVAQEVAKRMIARAKGAGNTKPGGRIINIASVAGLRVL-- 160 (258)
T ss_pred hcCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhcchhhHHHHHHHHHHHHhcCCcCCCCCCCeEEEEECcccccCCC--
Confidence 579999999964321 12345667899999999999987642 211 2489999997765422
Q ss_pred CCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCC
Q 012176 255 VPFSESHRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQD 331 (469)
Q Consensus 255 ~~~~E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 331 (469)
.+...|+.+|.+.+.+++.++.++ ++++++|+||.|+++....... ......+..-.+
T Consensus 161 ----------~~~~~Y~~sK~a~~~~~~~la~~~~~~~i~v~~v~pG~v~t~~~~~~~~-~~~~~~~~~~~~-------- 221 (258)
T PRK06949 161 ----------PQIGLYCMSKAAVVHMTRAMALEWGRHGINVNAICPGYIDTEINHHHWE-TEQGQKLVSMLP-------- 221 (258)
T ss_pred ----------CCccHHHHHHHHHHHHHHHHHHHHHhcCeEEEEEeeCCCcCCcchhccC-hHHHHHHHhcCC--------
Confidence 235679999999999999988763 8999999999999985432111 111111111111
Q ss_pred CCcceEecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCC
Q 012176 332 DREVARDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNT 373 (469)
Q Consensus 332 ~~~~~~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~ 373 (469)
...+...+|++++++.++..... ...|.++.+.++
T Consensus 222 ----~~~~~~p~~~~~~~~~l~~~~~~---~~~G~~i~~dgg 256 (258)
T PRK06949 222 ----RKRVGKPEDLDGLLLLLAADESQ---FINGAIISADDG 256 (258)
T ss_pred ----CCCCcCHHHHHHHHHHHhChhhc---CCCCcEEEeCCC
Confidence 12345579999999998764421 234466655543
|
|
| >PRK06483 dihydromonapterin reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.9e-17 Score=157.38 Aligned_cols=216 Identities=12% Similarity=0.060 Sum_probs=152.0
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccC-----
Q 012176 118 GMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV----- 192 (469)
Q Consensus 118 ~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~----- 192 (469)
+|++|||||+|+||++++++|+++|++|++++|+.... . ......++.++.+|++|.++++++++..
T Consensus 2 ~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~---~-----~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 73 (236)
T PRK06483 2 PAPILITGAGQRIGLALAWHLLAQGQPVIVSYRTHYPA---I-----DGLRQAGAQCIQADFSTNAGIMAFIDELKQHTD 73 (236)
T ss_pred CceEEEECCCChHHHHHHHHHHHCCCeEEEEeCCchhH---H-----HHHHHcCCEEEEcCCCCHHHHHHHHHHHHhhCC
Confidence 46899999999999999999999999999999865321 1 1111235788999999999988887654
Q ss_pred CccEEEEcccccChh----hhccChHHHHHHHHHHHHHHHHHHHh----cC-CCCeEEEEcCccccCCCCCCCCCCCCCC
Q 012176 193 PFTHVLHLAAQAGVR----YAMQNPQSYVASNIAGFVNLLEVCKS----VN-PQPSIVWASSSSVYGLNTQVPFSESHRT 263 (469)
Q Consensus 193 ~~d~Vih~Aa~~~~~----~~~~~~~~~~~~Nv~~~~~ll~aa~~----~~-~~~~~V~~SS~~vyg~~~~~~~~E~~~~ 263 (469)
++|++|||||..... ...++.+..+++|+.++..+.+++.. .+ ...++|++||.....+.
T Consensus 74 ~id~lv~~ag~~~~~~~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~~~g~iv~~ss~~~~~~~----------- 142 (236)
T PRK06483 74 GLRAIIHNASDWLAEKPGAPLADVLARMMQIHVNAPYLLNLALEDLLRGHGHAASDIIHITDYVVEKGS----------- 142 (236)
T ss_pred CccEEEECCccccCCCcCccCHHHHHHHHHHcchHHHHHHHHHHHHHHhCCCCCceEEEEcchhhccCC-----------
Confidence 489999999964322 12345567899999999887776543 22 12389999986543211
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHh--CCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceEeccc
Q 012176 264 DQPASLYAATKKAGEEIAHTYNHIY--GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTY 341 (469)
Q Consensus 264 ~~p~~~Y~~sK~~~E~~~~~~~~~~--gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~ 341 (469)
.....|+.+|.+.|.+++.++.++ ++++++|+||.+.-+.... ...........++.. +..
T Consensus 143 -~~~~~Y~asKaal~~l~~~~a~e~~~~irvn~v~Pg~~~~~~~~~----~~~~~~~~~~~~~~~------------~~~ 205 (236)
T PRK06483 143 -DKHIAYAASKAALDNMTLSFAAKLAPEVKVNSIAPALILFNEGDD----AAYRQKALAKSLLKI------------EPG 205 (236)
T ss_pred -CCCccHHHHHHHHHHHHHHHHHHHCCCcEEEEEccCceecCCCCC----HHHHHHHhccCcccc------------CCC
Confidence 234679999999999999999886 5999999999985432221 112222222222211 335
Q ss_pred HHHHHHHHHHHhccCCCCCCCCCceEEEeCCCC
Q 012176 342 IDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTS 374 (469)
Q Consensus 342 v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~ 374 (469)
.+|+++++..++... -..|+++.+.++.
T Consensus 206 ~~~va~~~~~l~~~~-----~~~G~~i~vdgg~ 233 (236)
T PRK06483 206 EEEIIDLVDYLLTSC-----YVTGRSLPVDGGR 233 (236)
T ss_pred HHHHHHHHHHHhcCC-----CcCCcEEEeCccc
Confidence 799999999988632 3455888887664
|
|
| >PRK08267 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.4e-17 Score=160.61 Aligned_cols=204 Identities=16% Similarity=0.102 Sum_probs=145.0
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccC-----
Q 012176 118 GMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV----- 192 (469)
Q Consensus 118 ~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~----- 192 (469)
+|++|||||+|+||.+++++|+++|++|++++|+.+. ..... .......++++.+|++|.+++.++++++
T Consensus 1 mk~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~----~~~~~-~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~ 75 (260)
T PRK08267 1 MKSIFITGAASGIGRATALLFAAEGWRVGAYDINEAG----LAALA-AELGAGNAWTGALDVTDRAAWDAALADFAAATG 75 (260)
T ss_pred CcEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHH----HHHHH-HHhcCCceEEEEecCCCHHHHHHHHHHHHHHcC
Confidence 3689999999999999999999999999999985431 11111 1122347899999999999998887643
Q ss_pred -CccEEEEcccccChh----hhccChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEEcCcc-ccCCCCCCCCCCCCC
Q 012176 193 -PFTHVLHLAAQAGVR----YAMQNPQSYVASNIAGFVNLLEVCKS----VNPQPSIVWASSSS-VYGLNTQVPFSESHR 262 (469)
Q Consensus 193 -~~d~Vih~Aa~~~~~----~~~~~~~~~~~~Nv~~~~~ll~aa~~----~~~~~~~V~~SS~~-vyg~~~~~~~~E~~~ 262 (469)
++|+||||||..... ...++.+..+++|+.++.++++++.. .+. .+||++||.. +++.
T Consensus 76 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~-~~iv~isS~~~~~~~----------- 143 (260)
T PRK08267 76 GRLDVLFNNAGILRGGPFEDIPLEAHDRVIDINVKGVLNGAHAALPYLKATPG-ARVINTSSASAIYGQ----------- 143 (260)
T ss_pred CCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCC-CEEEEeCchhhCcCC-----------
Confidence 679999999975432 12344567899999999999988753 333 3899999964 4432
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceEec
Q 012176 263 TDQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDF 339 (469)
Q Consensus 263 ~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 339 (469)
.....|+.+|.+.+.+++.++.+ .++++++++||.+..+....... ........ ...-.
T Consensus 144 --~~~~~Y~~sKaa~~~~~~~l~~~~~~~~i~v~~i~pg~~~t~~~~~~~~--~~~~~~~~--------------~~~~~ 205 (260)
T PRK08267 144 --PGLAVYSATKFAVRGLTEALDLEWRRHGIRVADVMPLFVDTAMLDGTSN--EVDAGSTK--------------RLGVR 205 (260)
T ss_pred --CCchhhHHHHHHHHHHHHHHHHHhcccCcEEEEEecCCcCCcccccccc--hhhhhhHh--------------hccCC
Confidence 23467999999999999998865 37999999999987653321000 00000000 00113
Q ss_pred ccHHHHHHHHHHHhccC
Q 012176 340 TYIDDVVKGCVGATGSG 356 (469)
Q Consensus 340 v~v~Dva~~~~~~~~~~ 356 (469)
+..+|++++++.+++..
T Consensus 206 ~~~~~va~~~~~~~~~~ 222 (260)
T PRK08267 206 LTPEDVAEAVWAAVQHP 222 (260)
T ss_pred CCHHHHHHHHHHHHhCC
Confidence 55799999999998654
|
|
| >PRK07102 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=6.6e-18 Score=161.18 Aligned_cols=200 Identities=16% Similarity=0.068 Sum_probs=145.0
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccC--Ccc
Q 012176 118 GMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--PFT 195 (469)
Q Consensus 118 ~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~--~~d 195 (469)
+|+|+||||+|+||.+++++|+++|++|++++|+.+.......... .....+++++++|++|+++++++++.+ ++|
T Consensus 1 ~~~vlItGas~giG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~~~--~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~d 78 (243)
T PRK07102 1 MKKILIIGATSDIARACARRYAAAGARLYLAARDVERLERLADDLR--ARGAVAVSTHELDILDTASHAAFLDSLPALPD 78 (243)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHH--HhcCCeEEEEecCCCChHHHHHHHHHHhhcCC
Confidence 3689999999999999999999999999999996532111111111 112347899999999999998888764 569
Q ss_pred EEEEcccccChh----hhccChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEEcCccccCCCCCCCCCCCCCCCCCC
Q 012176 196 HVLHLAAQAGVR----YAMQNPQSYVASNIAGFVNLLEVCKS----VNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPA 267 (469)
Q Consensus 196 ~Vih~Aa~~~~~----~~~~~~~~~~~~Nv~~~~~ll~aa~~----~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~ 267 (469)
+|||++|..... ...++....+++|+.++..+++++.. .+. ++||++||.....+. ...
T Consensus 79 ~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~-~~iv~~sS~~~~~~~------------~~~ 145 (243)
T PRK07102 79 IVLIAVGTLGDQAACEADPALALREFRTNFEGPIALLTLLANRFEARGS-GTIVGISSVAGDRGR------------ASN 145 (243)
T ss_pred EEEECCcCCCCcccccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCC-CEEEEEecccccCCC------------CCC
Confidence 999999864322 12233456789999999999988654 344 389999996432211 234
Q ss_pred ChHHHHHHHHHHHHHHHHHH---hCCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceEecccHHH
Q 012176 268 SLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDD 344 (469)
Q Consensus 268 ~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~D 344 (469)
..|+.+|.+.+.+++.++.+ .|+++++++||.++++.... ... . + .....++|
T Consensus 146 ~~Y~~sK~a~~~~~~~l~~el~~~gi~v~~v~pg~v~t~~~~~--------------~~~--~-----~---~~~~~~~~ 201 (243)
T PRK07102 146 YVYGSAKAALTAFLSGLRNRLFKSGVHVLTVKPGFVRTPMTAG--------------LKL--P-----G---PLTAQPEE 201 (243)
T ss_pred cccHHHHHHHHHHHHHHHHHhhccCcEEEEEecCcccChhhhc--------------cCC--C-----c---cccCCHHH
Confidence 56999999999999998754 48999999999999862211 000 0 0 12456899
Q ss_pred HHHHHHHHhccC
Q 012176 345 VVKGCVGATGSG 356 (469)
Q Consensus 345 va~~~~~~~~~~ 356 (469)
+++.++.++.++
T Consensus 202 ~a~~i~~~~~~~ 213 (243)
T PRK07102 202 VAKDIFRAIEKG 213 (243)
T ss_pred HHHHHHHHHhCC
Confidence 999999998865
|
|
| >PRK08017 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=5.6e-18 Score=162.78 Aligned_cols=204 Identities=21% Similarity=0.113 Sum_probs=143.6
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccC------
Q 012176 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV------ 192 (469)
Q Consensus 119 ~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~------ 192 (469)
++|+||||+|+||.++++.|+++|++|++++|+.+. .. .....+++.+.+|+.|.+++.++++.+
T Consensus 3 k~vlVtGasg~IG~~la~~l~~~g~~v~~~~r~~~~----~~-----~~~~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~ 73 (256)
T PRK08017 3 KSVLITGCSSGIGLEAALELKRRGYRVLAACRKPDD----VA-----RMNSLGFTGILLDLDDPESVERAADEVIALTDN 73 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHH----hH-----HHHhCCCeEEEeecCCHHHHHHHHHHHHHhcCC
Confidence 589999999999999999999999999999985421 11 111236888999999998877766542
Q ss_pred CccEEEEcccccChh----hhccChHHHHHHHHHHHHHH----HHHHHhcCCCCeEEEEcCccccCCCCCCCCCCCCCCC
Q 012176 193 PFTHVLHLAAQAGVR----YAMQNPQSYVASNIAGFVNL----LEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTD 264 (469)
Q Consensus 193 ~~d~Vih~Aa~~~~~----~~~~~~~~~~~~Nv~~~~~l----l~aa~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~ 264 (469)
++|++||++|..... ...++.+..++.|+.++.++ ++++++.+.. ++|++||...+.+.
T Consensus 74 ~~~~ii~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~-~iv~~ss~~~~~~~------------ 140 (256)
T PRK08017 74 RLYGLFNNAGFGVYGPLSTISRQQMEQQFSTNFFGTHQLTMLLLPAMLPHGEG-RIVMTSSVMGLIST------------ 140 (256)
T ss_pred CCeEEEECCCCCCccchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCC-EEEEEcCcccccCC------------
Confidence 469999999864321 12334557899999998776 5556666655 89999996443221
Q ss_pred CCCChHHHHHHHHHHHHHHHHH---HhCCcEEEEeecceecCCCCCCChHHHHHHHHHcCC-ceEEEeeCCCCcceEecc
Q 012176 265 QPASLYAATKKAGEEIAHTYNH---IYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGK-TIDVYKTQDDREVARDFT 340 (469)
Q Consensus 265 ~p~~~Y~~sK~~~E~~~~~~~~---~~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~v 340 (469)
.....|+.+|...|.+.+.++. ..+++++++|||.+..+... .+..+. ..... ..+...+.++
T Consensus 141 ~~~~~Y~~sK~~~~~~~~~l~~~~~~~~i~v~~v~pg~~~t~~~~----------~~~~~~~~~~~~---~~~~~~~~~~ 207 (256)
T PRK08017 141 PGRGAYAASKYALEAWSDALRMELRHSGIKVSLIEPGPIRTRFTD----------NVNQTQSDKPVE---NPGIAARFTL 207 (256)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHhhcCCEEEEEeCCCcccchhh----------cccchhhccchh---hhHHHhhcCC
Confidence 3456799999999998876643 35899999999887654211 111111 11111 1133345689
Q ss_pred cHHHHHHHHHHHhccCC
Q 012176 341 YIDDVVKGCVGATGSGG 357 (469)
Q Consensus 341 ~v~Dva~~~~~~~~~~~ 357 (469)
+++|+++++..+++++.
T Consensus 208 ~~~d~a~~~~~~~~~~~ 224 (256)
T PRK08017 208 GPEAVVPKLRHALESPK 224 (256)
T ss_pred CHHHHHHHHHHHHhCCC
Confidence 99999999999997763
|
|
| >PRK06079 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.7e-17 Score=159.39 Aligned_cols=225 Identities=14% Similarity=0.070 Sum_probs=156.1
Q ss_pred CCCCEEEEEcCC--ChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccC-
Q 012176 116 PNGMTVLVTGAA--GFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV- 192 (469)
Q Consensus 116 ~~~~~VlVtGat--G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~- 192 (469)
.++|+++||||+ +.||..++++|+++|++|++.+|+. ......... ....+.++.+|++|+++++++++..
T Consensus 5 l~~k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r~~-----~~~~~~~~~-~~~~~~~~~~Dl~~~~~v~~~~~~~~ 78 (252)
T PRK06079 5 LSGKKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQND-----RMKKSLQKL-VDEEDLLVECDVASDESIERAFATIK 78 (252)
T ss_pred cCCCEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecCch-----HHHHHHHhh-ccCceeEEeCCCCCHHHHHHHHHHHH
Confidence 567899999999 7999999999999999999998842 111111121 2246889999999999988877653
Q ss_pred ----CccEEEEcccccCh--------hhhccChHHHHHHHHHHHHHHHHHHHhcC-CCCeEEEEcCccccCCCCCCCCCC
Q 012176 193 ----PFTHVLHLAAQAGV--------RYAMQNPQSYVASNIAGFVNLLEVCKSVN-PQPSIVWASSSSVYGLNTQVPFSE 259 (469)
Q Consensus 193 ----~~d~Vih~Aa~~~~--------~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~-~~~~~V~~SS~~vyg~~~~~~~~E 259 (469)
++|++|||||.... ....++.+..+++|+.+...+++++...- ..+++|++||.+.....
T Consensus 79 ~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~in~~~~~~l~~~~~~~~~~~g~Iv~iss~~~~~~~------- 151 (252)
T PRK06079 79 ERVGKIDGIVHAIAYAKKEELGGNVTDTSRDGYALAQDISAYSLIAVAKYARPLLNPGASIVTLTYFGSERAI------- 151 (252)
T ss_pred HHhCCCCEEEEcccccccccccCCcccCCHHHHHHHhCcccHHHHHHHHHHHHhcccCceEEEEeccCccccC-------
Confidence 58999999997432 12334456788999999999988765432 12489999986543211
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcce
Q 012176 260 SHRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVA 336 (469)
Q Consensus 260 ~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 336 (469)
.....|+.+|.+.+.+++.++.++ |++++.|.||.|-.+..........+.+......|.
T Consensus 152 -----~~~~~Y~asKaal~~l~~~la~el~~~gI~vn~i~PG~v~T~~~~~~~~~~~~~~~~~~~~p~------------ 214 (252)
T PRK06079 152 -----PNYNVMGIAKAALESSVRYLARDLGKKGIRVNAISAGAVKTLAVTGIKGHKDLLKESDSRTVD------------ 214 (252)
T ss_pred -----CcchhhHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCcccccccccCCChHHHHHHHHhcCcc------------
Confidence 234679999999999999998764 899999999999776321110111222322222111
Q ss_pred EecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCC
Q 012176 337 RDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNT 373 (469)
Q Consensus 337 ~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~ 373 (469)
..+..++|++++++.++..... ...|+++.+.++
T Consensus 215 ~r~~~pedva~~~~~l~s~~~~---~itG~~i~vdgg 248 (252)
T PRK06079 215 GVGVTIEEVGNTAAFLLSDLST---GVTGDIIYVDKG 248 (252)
T ss_pred cCCCCHHHHHHHHHHHhCcccc---cccccEEEeCCc
Confidence 1256689999999998865422 234577776655
|
|
| >TIGR02415 23BDH acetoin reductases | Back alignment and domain information |
|---|
Probab=99.79 E-value=4.7e-18 Score=163.11 Aligned_cols=230 Identities=16% Similarity=0.055 Sum_probs=152.3
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhc-cCCeEEEEecCCCHHHHHHhhccC-----
Q 012176 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQ-KHQVFIVEGDLNDAPLLTKLFDVV----- 192 (469)
Q Consensus 119 ~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~v~~v~~Dl~d~~~l~~~~~~~----- 192 (469)
++++||||+|+||.+++++|+++|++|+++.|+.. ........... ...+.++.+|++|++++.++++..
T Consensus 1 k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~----~~~~~~~~l~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~~~ 76 (254)
T TIGR02415 1 KVALVTGGAQGIGKGIAERLAKDGFAVAVADLNEE----TAKETAKEINQAGGKAVAYKLDVSDKDQVFSAIDQAAEKFG 76 (254)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHH----HHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 57999999999999999999999999999998532 11111122111 236889999999999988887653
Q ss_pred CccEEEEcccccCh----hhhccChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEEcCccccCCCCCCCCCCCCCCC
Q 012176 193 PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCKS----VNPQPSIVWASSSSVYGLNTQVPFSESHRTD 264 (469)
Q Consensus 193 ~~d~Vih~Aa~~~~----~~~~~~~~~~~~~Nv~~~~~ll~aa~~----~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~ 264 (469)
++|+||||||.... ....++.+..+++|+.++..+++++.. .+...+||++||.....+.
T Consensus 77 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~------------ 144 (254)
T TIGR02415 77 GFDVMVNNAGVAPITPILEITEEELKKVYNVNVKGVLFGIQAAARQFKKQGHGGKIINAASIAGHEGN------------ 144 (254)
T ss_pred CCCEEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCeEEEEecchhhcCCC------------
Confidence 57999999997432 223344567899999999888776543 3333489999996543221
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEee---CCCCcceEe
Q 012176 265 QPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKT---QDDREVARD 338 (469)
Q Consensus 265 ~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~~~~~~~ 338 (469)
...+.|+.+|.+.+.+++.++.++ ++++++++||.+..+... .+..........++... .........
T Consensus 145 ~~~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~Pg~i~t~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (254)
T TIGR02415 145 PILSAYSSTKFAVRGLTQTAAQELAPKGITVNAYCPGIVKTPMWE------EIDEETSEIAGKPIGEGFEEFSSEIALGR 218 (254)
T ss_pred CCCcchHHHHHHHHHHHHHHHHHhcccCeEEEEEecCcccChhhh------hhhhhhhhcccCchHHHHHHHHhhCCCCC
Confidence 235679999999999999888765 799999999998665321 11100000000000000 000001123
Q ss_pred cccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCC
Q 012176 339 FTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNT 373 (469)
Q Consensus 339 ~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~ 373 (469)
+..++|+++++..++..... ...|.++.+.++
T Consensus 219 ~~~~~~~a~~~~~l~~~~~~---~~~g~~~~~d~g 250 (254)
T TIGR02415 219 PSEPEDVAGLVSFLASEDSD---YITGQSILVDGG 250 (254)
T ss_pred CCCHHHHHHHHHhhcccccC---CccCcEEEecCC
Confidence 67889999999999877532 234466666554
|
One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733). |
| >PRK05854 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.7e-17 Score=163.24 Aligned_cols=188 Identities=13% Similarity=0.036 Sum_probs=136.7
Q ss_pred CCCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccC-
Q 012176 114 RRPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV- 192 (469)
Q Consensus 114 ~~~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~- 192 (469)
...++|+++||||+++||.+++++|+++|++|++++|+.+........... ......+.++.+|+.|.++++++++..
T Consensus 10 ~~l~gk~~lITGas~GIG~~~a~~La~~G~~Vil~~R~~~~~~~~~~~l~~-~~~~~~v~~~~~Dl~d~~sv~~~~~~~~ 88 (313)
T PRK05854 10 PDLSGKRAVVTGASDGLGLGLARRLAAAGAEVILPVRNRAKGEAAVAAIRT-AVPDAKLSLRALDLSSLASVAALGEQLR 88 (313)
T ss_pred cccCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHH-hCCCCceEEEEecCCCHHHHHHHHHHHH
Confidence 346789999999999999999999999999999999965422222111111 111236889999999999998887653
Q ss_pred ----CccEEEEcccccChh---hhccChHHHHHHHHHHHHHHHHHHHh---cCCCCeEEEEcCccccCC-CCCCCCCCCC
Q 012176 193 ----PFTHVLHLAAQAGVR---YAMQNPQSYVASNIAGFVNLLEVCKS---VNPQPSIVWASSSSVYGL-NTQVPFSESH 261 (469)
Q Consensus 193 ----~~d~Vih~Aa~~~~~---~~~~~~~~~~~~Nv~~~~~ll~aa~~---~~~~~~~V~~SS~~vyg~-~~~~~~~E~~ 261 (469)
++|++|||||..... ...+..+..+.+|+.+...+.+++.. .+. .+||++||...+.. ....+..++.
T Consensus 89 ~~~~~iD~li~nAG~~~~~~~~~t~~~~e~~~~vN~~g~~~l~~~llp~l~~~~-~riv~vsS~~~~~~~~~~~~~~~~~ 167 (313)
T PRK05854 89 AEGRPIHLLINNAGVMTPPERQTTADGFELQFGTNHLGHFALTAHLLPLLRAGR-ARVTSQSSIAARRGAINWDDLNWER 167 (313)
T ss_pred HhCCCccEEEECCccccCCccccCcccHHHHhhhhhHHHHHHHHHHHHHHHhCC-CCeEEEechhhcCCCcCcccccccc
Confidence 579999999975432 34466778999999998888877642 232 38999999755432 1111222222
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHH-----hCCcEEEEeecceecCC
Q 012176 262 RTDQPASLYAATKKAGEEIAHTYNHI-----YGLALTGLRFFTVYGPW 304 (469)
Q Consensus 262 ~~~~p~~~Y~~sK~~~E~~~~~~~~~-----~gi~~~ilRp~~v~Gp~ 304 (469)
.. .+...|+.+|.+.+.++++++.+ .|+.++.+.||.|..+.
T Consensus 168 ~~-~~~~~Y~~SK~a~~~~~~~la~~~~~~~~gI~v~~v~PG~v~T~~ 214 (313)
T PRK05854 168 SY-AGMRAYSQSKIAVGLFALELDRRSRAAGWGITSNLAHPGVAPTNL 214 (313)
T ss_pred cC-cchhhhHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEecceeccCc
Confidence 22 45678999999999999999764 37999999999997653
|
|
| >PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.1e-17 Score=161.70 Aligned_cols=225 Identities=16% Similarity=0.109 Sum_probs=156.1
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccC---
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~--- 192 (469)
.++++++||||+|+||.+++++|+++|++|++++|+.+ ......... ..++.++.+|++|.++++++++.+
T Consensus 4 ~~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~----~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~ 77 (263)
T PRK06200 4 LHGQVALITGGGSGIGRALVERFLAEGARVAVLERSAE----KLASLRQRF--GDHVLVVEGDVTSYADNQRAVDQTVDA 77 (263)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHH----HHHHHHHHh--CCcceEEEccCCCHHHHHHHHHHHHHh
Confidence 56789999999999999999999999999999998543 111111111 236888999999999988887754
Q ss_pred --CccEEEEcccccChh-----hhcc----ChHHHHHHHHHHHHHHHHHHHhc--CCCCeEEEEcCccccCCCCCCCCCC
Q 012176 193 --PFTHVLHLAAQAGVR-----YAMQ----NPQSYVASNIAGFVNLLEVCKSV--NPQPSIVWASSSSVYGLNTQVPFSE 259 (469)
Q Consensus 193 --~~d~Vih~Aa~~~~~-----~~~~----~~~~~~~~Nv~~~~~ll~aa~~~--~~~~~~V~~SS~~vyg~~~~~~~~E 259 (469)
++|+||||||..... ...+ ..+.++++|+.++..+++++... ...+++|++||...+.+.
T Consensus 78 ~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~------- 150 (263)
T PRK06200 78 FGKLDCFVGNAGIWDYNTSLVDIPAETLDTAFDEIFNVNVKGYLLGAKAALPALKASGGSMIFTLSNSSFYPG------- 150 (263)
T ss_pred cCCCCEEEECCCCcccCCCcccCChhHHHHHHHHHeeeccHhHHHHHHHHHHHHHhcCCEEEEECChhhcCCC-------
Confidence 689999999964211 1111 14567889999999998887542 112489999998766432
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHHh--CCcEEEEeecceecCCCCCCC---------hHHHHHHHHHcCCceEEEe
Q 012176 260 SHRTDQPASLYAATKKAGEEIAHTYNHIY--GLALTGLRFFTVYGPWGRPDM---------AYFFFTKDILQGKTIDVYK 328 (469)
Q Consensus 260 ~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~--gi~~~ilRp~~v~Gp~~~~~~---------~~~~~~~~~~~g~~~~~~~ 328 (469)
.+...|+.+|.+.+.+++.++.++ +++++.|.||.|..+...... ..+.....+....|
T Consensus 151 -----~~~~~Y~~sK~a~~~~~~~la~el~~~Irvn~i~PG~i~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p----- 220 (263)
T PRK06200 151 -----GGGPLYTASKHAVVGLVRQLAYELAPKIRVNGVAPGGTVTDLRGPASLGQGETSISDSPGLADMIAAITP----- 220 (263)
T ss_pred -----CCCchhHHHHHHHHHHHHHHHHHHhcCcEEEEEeCCccccCCcCccccCCCCcccccccchhHHhhcCCC-----
Confidence 234579999999999999998875 599999999999776322100 00111111111111
Q ss_pred eCCCCcceEecccHHHHHHHHHHHhccC-CCCCCCCCceEEEeCCC
Q 012176 329 TQDDREVARDFTYIDDVVKGCVGATGSG-GKKRGPAQLRVYNLGNT 373 (469)
Q Consensus 329 ~~~~~~~~~~~v~v~Dva~~~~~~~~~~-~~~~~~~~~~iyni~~~ 373 (469)
...+...+|++++++.++... .. -..|+++.+.++
T Consensus 221 -------~~r~~~~~eva~~~~fl~s~~~~~---~itG~~i~vdgG 256 (263)
T PRK06200 221 -------LQFAPQPEDHTGPYVLLASRRNSR---ALTGVVINADGG 256 (263)
T ss_pred -------CCCCCCHHHHhhhhhheecccccC---cccceEEEEcCc
Confidence 123667899999999887643 22 345588888665
|
|
| >PRK07904 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.4e-17 Score=158.50 Aligned_cols=200 Identities=19% Similarity=0.085 Sum_probs=141.5
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCC-CcEEEEeCCCCCCChhHHHHHHHhh--ccCCeEEEEecCCCHHHHHHhhcc-
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRG-DGVLGLDNFNSYYDPSLKRARQKLL--QKHQVFIVEGDLNDAPLLTKLFDV- 191 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~v~~v~~Dl~d~~~l~~~~~~- 191 (469)
.++++|+||||+|+||.+++++|+++| ++|++++|+.+.. +........ ...+++++.+|++|.++++++++.
T Consensus 6 ~~~~~vlItGas~giG~~la~~l~~~gg~~V~~~~r~~~~~---~~~~~~~l~~~~~~~v~~~~~D~~~~~~~~~~~~~~ 82 (253)
T PRK07904 6 GNPQTILLLGGTSEIGLAICERYLKNAPARVVLAALPDDPR---RDAAVAQMKAAGASSVEVIDFDALDTDSHPKVIDAA 82 (253)
T ss_pred CCCcEEEEEcCCcHHHHHHHHHHHhcCCCeEEEEeCCcchh---HHHHHHHHHhcCCCceEEEEecCCChHHHHHHHHHH
Confidence 466899999999999999999999995 8999999976531 111111111 123689999999999987666653
Q ss_pred ---CCccEEEEcccccChhhh-ccCh---HHHHHHHHHHHHH----HHHHHHhcCCCCeEEEEcCccccCCCCCCCCCCC
Q 012176 192 ---VPFTHVLHLAAQAGVRYA-MQNP---QSYVASNIAGFVN----LLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSES 260 (469)
Q Consensus 192 ---~~~d~Vih~Aa~~~~~~~-~~~~---~~~~~~Nv~~~~~----ll~aa~~~~~~~~~V~~SS~~vyg~~~~~~~~E~ 260 (469)
-++|++|||+|....... ..+. .+.+++|+.++.. ++.++++.+.. +||++||...+.+.
T Consensus 83 ~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~l~~~~~~~~~~-~iv~isS~~g~~~~-------- 153 (253)
T PRK07904 83 FAGGDVDVAIVAFGLLGDAEELWQNQRKAVQIAEINYTAAVSVGVLLGEKMRAQGFG-QIIAMSSVAGERVR-------- 153 (253)
T ss_pred HhcCCCCEEEEeeecCCchhhcccCHHHHHHHHHHHhHhHHHHHHHHHHHHHhcCCc-eEEEEechhhcCCC--------
Confidence 257999999987543211 1122 2468999998876 45566666654 99999997543211
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceE
Q 012176 261 HRTDQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVAR 337 (469)
Q Consensus 261 ~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 337 (469)
.+...|+.+|++.+.+.+.++.+ +|+++++++||.|..+.... ... . .
T Consensus 154 ----~~~~~Y~~sKaa~~~~~~~l~~el~~~~i~v~~v~Pg~v~t~~~~~-------------~~~---------~---~ 204 (253)
T PRK07904 154 ----RSNFVYGSTKAGLDGFYLGLGEALREYGVRVLVVRPGQVRTRMSAH-------------AKE---------A---P 204 (253)
T ss_pred ----CCCcchHHHHHHHHHHHHHHHHHHhhcCCEEEEEeeCceecchhcc-------------CCC---------C---C
Confidence 23456999999999887777644 58999999999998762211 000 0 1
Q ss_pred ecccHHHHHHHHHHHhccC
Q 012176 338 DFTYIDDVVKGCVGATGSG 356 (469)
Q Consensus 338 ~~v~v~Dva~~~~~~~~~~ 356 (469)
..+..+|+|+.++.++.++
T Consensus 205 ~~~~~~~~A~~i~~~~~~~ 223 (253)
T PRK07904 205 LTVDKEDVAKLAVTAVAKG 223 (253)
T ss_pred CCCCHHHHHHHHHHHHHcC
Confidence 1357899999999999876
|
|
| >TIGR01829 AcAcCoA_reduct acetoacetyl-CoA reductase | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.2e-17 Score=155.97 Aligned_cols=223 Identities=13% Similarity=0.049 Sum_probs=153.7
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHh-hccCCeEEEEecCCCHHHHHHhhccC-----
Q 012176 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKL-LQKHQVFIVEGDLNDAPLLTKLFDVV----- 192 (469)
Q Consensus 119 ~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~v~~v~~Dl~d~~~l~~~~~~~----- 192 (469)
|++|||||+|+||.++++.|+++|++|+++.|... .......... ....++.++.+|++|++.+++++++.
T Consensus 1 k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~---~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 77 (242)
T TIGR01829 1 RIALVTGGMGGIGTAICQRLAKDGYRVAANCGPNE---ERAEAWLQEQGALGFDFRVVEGDVSSFESCKAAVAKVEAELG 77 (242)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCH---HHHHHHHHHHHhhCCceEEEEecCCCHHHHHHHHHHHHHHcC
Confidence 57999999999999999999999999999988321 1111111111 11347889999999999988877643
Q ss_pred CccEEEEcccccCh----hhhccChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEEcCccccCCCCCCCCCCCCCCC
Q 012176 193 PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVC----KSVNPQPSIVWASSSSVYGLNTQVPFSESHRTD 264 (469)
Q Consensus 193 ~~d~Vih~Aa~~~~----~~~~~~~~~~~~~Nv~~~~~ll~aa----~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~ 264 (469)
++|+||||||.... ....++++..++.|+.++..+++++ ++.+.. +||++||.....+.
T Consensus 78 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~-~iv~iss~~~~~~~------------ 144 (242)
T TIGR01829 78 PIDVLVNNAGITRDATFKKMTYEQWSAVIDTNLNSVFNVTQPVIDGMRERGWG-RIINISSVNGQKGQ------------ 144 (242)
T ss_pred CCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCc-EEEEEcchhhcCCC------------
Confidence 47999999987432 2233455677899999988866554 455554 89999996443211
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceEeccc
Q 012176 265 QPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTY 341 (469)
Q Consensus 265 ~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~ 341 (469)
.....|+.+|.+.+.+++.++.++ |++++.++||.+.++.... ....+...+....++. .+..
T Consensus 145 ~~~~~y~~sk~a~~~~~~~la~~~~~~~i~v~~i~pg~~~t~~~~~--~~~~~~~~~~~~~~~~------------~~~~ 210 (242)
T TIGR01829 145 FGQTNYSAAKAGMIGFTKALAQEGATKGVTVNTISPGYIATDMVMA--MREDVLNSIVAQIPVG------------RLGR 210 (242)
T ss_pred CCcchhHHHHHHHHHHHHHHHHHhhhhCeEEEEEeeCCCcCccccc--cchHHHHHHHhcCCCC------------CCcC
Confidence 234679999999999988887653 8999999999999875432 1122333333332221 2345
Q ss_pred HHHHHHHHHHHhccCCCCCCCCCceEEEeCCCC
Q 012176 342 IDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTS 374 (469)
Q Consensus 342 v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~ 374 (469)
.+|+++++..++.++.. ...|+++.+.++.
T Consensus 211 ~~~~a~~~~~l~~~~~~---~~~G~~~~~~gg~ 240 (242)
T TIGR01829 211 PEEIAAAVAFLASEEAG---YITGATLSINGGL 240 (242)
T ss_pred HHHHHHHHHHHcCchhc---CccCCEEEecCCc
Confidence 68999998877755421 2456888888763
|
(R)-3-hydroxyacyl-CoA + NADP+ = 3-oxoacyl-CoA + NADPH. Members of this family may act in the biosynthesis of poly-beta-hydroxybutyrate (e.g. Rhizobium meliloti) and related poly-beta-hydroxyalkanoates. Note that the member of this family from Azospirillum brasilense, designated NodG, appears to lack acetoacetyl-CoA reductase activity and to act instead in the production of nodulation factor. This family is downgraded to subfamily for this NodG. Other proteins designated NodG, as from Rhizobium, belong to related but distinct protein families. |
| >PRK09291 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.6e-18 Score=163.46 Aligned_cols=215 Identities=16% Similarity=0.128 Sum_probs=143.2
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHh-hccCCeEEEEecCCCHHHHHHhhccCCccE
Q 012176 118 GMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKL-LQKHQVFIVEGDLNDAPLLTKLFDVVPFTH 196 (469)
Q Consensus 118 ~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~v~~v~~Dl~d~~~l~~~~~~~~~d~ 196 (469)
+++||||||+|+||+++++.|+++|++|++++|+.. ......... ....++.++.+|++|++++.+++.+ ++|+
T Consensus 2 ~~~vlVtGasg~iG~~ia~~l~~~G~~v~~~~r~~~----~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~-~id~ 76 (257)
T PRK09291 2 SKTILITGAGSGFGREVALRLARKGHNVIAGVQIAP----QVTALRAEAARRGLALRVEKLDLTDAIDRAQAAEW-DVDV 76 (257)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHH----HHHHHHHHHHhcCCcceEEEeeCCCHHHHHHHhcC-CCCE
Confidence 468999999999999999999999999999998532 111111111 1123688999999999999988864 5699
Q ss_pred EEEcccccChh----hhccChHHHHHHHHHHHHHHHHH----HHhcCCCCeEEEEcCccccCCCCCCCCCCCCCCCCCCC
Q 012176 197 VLHLAAQAGVR----YAMQNPQSYVASNIAGFVNLLEV----CKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPAS 268 (469)
Q Consensus 197 Vih~Aa~~~~~----~~~~~~~~~~~~Nv~~~~~ll~a----a~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~ 268 (469)
||||||..... ...++.+..+++|+.++..+.++ +++.+.+ +||++||...+... ....
T Consensus 77 vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~-~iv~~SS~~~~~~~------------~~~~ 143 (257)
T PRK09291 77 LLNNAGIGEAGAVVDIPVELVRELFETNVFGPLELTQGFVRKMVARGKG-KVVFTSSMAGLITG------------PFTG 143 (257)
T ss_pred EEECCCcCCCcCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCc-eEEEEcChhhccCC------------CCcc
Confidence 99999964322 22334456788999988776654 3455654 99999996543221 2346
Q ss_pred hHHHHHHHHHHHHHHHHHH---hCCcEEEEeecceecCCCCCCChHHHHHHHHHcC-CceEEEeeCCCCcceEecccHHH
Q 012176 269 LYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQG-KTIDVYKTQDDREVARDFTYIDD 344 (469)
Q Consensus 269 ~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~v~v~D 344 (469)
.|+.+|.+.|.+++.++.+ .|+++++||||.+..+.... ....+....... ..+.. .+......+...+|
T Consensus 144 ~Y~~sK~a~~~~~~~l~~~~~~~gi~~~~v~pg~~~t~~~~~--~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~ 217 (257)
T PRK09291 144 AYCASKHALEAIAEAMHAELKPFGIQVATVNPGPYLTGFNDT--MAETPKRWYDPARNFTDP----EDLAFPLEQFDPQE 217 (257)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhcCcEEEEEecCcccccchhh--hhhhhhhhcchhhHHHhh----hhhhccccCCCHHH
Confidence 7999999999998887754 58999999999875432110 000000000000 00111 11122335678999
Q ss_pred HHHHHHHHhccC
Q 012176 345 VVKGCVGATGSG 356 (469)
Q Consensus 345 va~~~~~~~~~~ 356 (469)
++..++.++..+
T Consensus 218 ~~~~~~~~l~~~ 229 (257)
T PRK09291 218 MIDAMVEVIPAD 229 (257)
T ss_pred HHHHHHHHhcCC
Confidence 999998887654
|
|
| >PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.7e-17 Score=156.60 Aligned_cols=226 Identities=15% Similarity=0.038 Sum_probs=154.7
Q ss_pred CCCCEEEEEcCCC--hhHHHHHHHHHHCCCcEEEEeCCCCCC-------ChhHHHHHHHhh-ccCCeEEEEecCCCHHHH
Q 012176 116 PNGMTVLVTGAAG--FVGSHCSLALKKRGDGVLGLDNFNSYY-------DPSLKRARQKLL-QKHQVFIVEGDLNDAPLL 185 (469)
Q Consensus 116 ~~~~~VlVtGatG--~IG~~l~~~L~~~G~~V~~~~r~~~~~-------~~~~~~~~~~~~-~~~~v~~v~~Dl~d~~~l 185 (469)
.++++||||||+| .||.+++++|+++|++|++++|...+. ............ ....++++.+|++|.+++
T Consensus 3 l~~k~vlItGas~~~giG~~la~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~ 82 (256)
T PRK12748 3 LMKKIALVTGASRLNGIGAAVCRRLAAKGIDIFFTYWSPYDKTMPWGMHDKEPVLLKEEIESYGVRCEHMEIDLSQPYAP 82 (256)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHcCCcEEEEcCCccccccccccchhhHHHHHHHHHhcCCeEEEEECCCCCHHHH
Confidence 4568999999995 799999999999999999999862211 111111111111 123689999999999998
Q ss_pred HHhhccC-----CccEEEEcccccChh----hhccChHHHHHHHHHHHHHHHHHHHhc---CCCCeEEEEcCccccCCCC
Q 012176 186 TKLFDVV-----PFTHVLHLAAQAGVR----YAMQNPQSYVASNIAGFVNLLEVCKSV---NPQPSIVWASSSSVYGLNT 253 (469)
Q Consensus 186 ~~~~~~~-----~~d~Vih~Aa~~~~~----~~~~~~~~~~~~Nv~~~~~ll~aa~~~---~~~~~~V~~SS~~vyg~~~ 253 (469)
..+++.. ++|+|||+||..... ...++.+..+++|+.++..+++++... ...++||++||...+++.
T Consensus 83 ~~~~~~~~~~~g~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~ss~~~~~~~- 161 (256)
T PRK12748 83 NRVFYAVSERLGDPSILINNAAYSTHTRLEELTAEQLDKHYAVNVRATMLLSSAFAKQYDGKAGGRIINLTSGQSLGPM- 161 (256)
T ss_pred HHHHHHHHHhCCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCeEEEEECCccccCCC-
Confidence 8777652 579999999874322 122345677999999999999987643 122389999998766532
Q ss_pred CCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeC
Q 012176 254 QVPFSESHRTDQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQ 330 (469)
Q Consensus 254 ~~~~~E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~ 330 (469)
.....|+.+|.+.|.+++.++.+ ++++++.++||.+..+.... .....+....+
T Consensus 162 -----------~~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~i~Pg~~~t~~~~~-----~~~~~~~~~~~------- 218 (256)
T PRK12748 162 -----------PDELAYAATKGAIEAFTKSLAPELAEKGITVNAVNPGPTDTGWITE-----ELKHHLVPKFP------- 218 (256)
T ss_pred -----------CCchHHHHHHHHHHHHHHHHHHHHHHhCeEEEEEEeCcccCCCCCh-----hHHHhhhccCC-------
Confidence 23467999999999999998766 48999999999987764331 11111111111
Q ss_pred CCCcceEecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCC
Q 012176 331 DDREVARDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNT 373 (469)
Q Consensus 331 ~~~~~~~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~ 373 (469)
. ..+...+|+++++..++..... ...|+++++.++
T Consensus 219 --~---~~~~~~~~~a~~~~~l~~~~~~---~~~g~~~~~d~g 253 (256)
T PRK12748 219 --Q---GRVGEPVDAARLIAFLVSEEAK---WITGQVIHSEGG 253 (256)
T ss_pred --C---CCCcCHHHHHHHHHHHhCcccc---cccCCEEEecCC
Confidence 0 1234579999998877654321 234588888765
|
|
| >PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=8.1e-18 Score=162.80 Aligned_cols=221 Identities=15% Similarity=0.072 Sum_probs=155.7
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccC---
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~--- 192 (469)
.++|+|+||||+|+||.++++.|+++|++|++++|..... ...++..+.+|++|+++++++++..
T Consensus 7 l~~k~vlItG~s~gIG~~la~~l~~~G~~v~~~~~~~~~~------------~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 74 (266)
T PRK06171 7 LQGKIIIVTGGSSGIGLAIVKELLANGANVVNADIHGGDG------------QHENYQFVPTDVSSAEEVNHTVAEIIEK 74 (266)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCcccc------------ccCceEEEEccCCCHHHHHHHHHHHHHH
Confidence 5678999999999999999999999999999999865422 1236788999999999998888753
Q ss_pred --CccEEEEcccccCh-------------hhhccChHHHHHHHHHHHHHHHHHHHhcC---CCCeEEEEcCccccCCCCC
Q 012176 193 --PFTHVLHLAAQAGV-------------RYAMQNPQSYVASNIAGFVNLLEVCKSVN---PQPSIVWASSSSVYGLNTQ 254 (469)
Q Consensus 193 --~~d~Vih~Aa~~~~-------------~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~---~~~~~V~~SS~~vyg~~~~ 254 (469)
++|+||||||.... ....++.+.++++|+.++..+++++.... ...+||++||...+.+.
T Consensus 75 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~-- 152 (266)
T PRK06171 75 FGRIDGLVNNAGINIPRLLVDEKDPAGKYELNEAAFDKMFNINQKGVFLMSQAVARQMVKQHDGVIVNMSSEAGLEGS-- 152 (266)
T ss_pred cCCCCEEEECCcccCCccccccccccccccCCHHHHHHHHhhhchhHHHHHHHHHHHHHhcCCcEEEEEccccccCCC--
Confidence 67999999996422 12334456789999999999999876431 12389999997665322
Q ss_pred CCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeccee-cCCCCCCC----------hHHHHHHHHHc
Q 012176 255 VPFSESHRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVY-GPWGRPDM----------AYFFFTKDILQ 320 (469)
Q Consensus 255 ~~~~E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~-Gp~~~~~~----------~~~~~~~~~~~ 320 (469)
.....|+.+|.+.+.+++.++.++ |+++++|+||.+. .+...... ....+...+.+
T Consensus 153 ----------~~~~~Y~~sK~a~~~l~~~la~e~~~~gi~v~~v~pG~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (266)
T PRK06171 153 ----------EGQSCYAATKAALNSFTRSWAKELGKHNIRVVGVAPGILEATGLRTPEYEEALAYTRGITVEQLRAGYTK 222 (266)
T ss_pred ----------CCCchhHHHHHHHHHHHHHHHHHhhhcCeEEEEEeccccccCCCcChhhhhhhccccCCCHHHHHhhhcc
Confidence 234689999999999999998764 8999999999985 22211100 00111111111
Q ss_pred CCceEEEeeCCCCcceEecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCC
Q 012176 321 GKTIDVYKTQDDREVARDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNT 373 (469)
Q Consensus 321 g~~~~~~~~~~~~~~~~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~ 373 (469)
...++ ...+...+|+|.++..++..... -..|+++++.++
T Consensus 223 ~~~~p----------~~r~~~~~eva~~~~fl~s~~~~---~itG~~i~vdgg 262 (266)
T PRK06171 223 TSTIP----------LGRSGKLSEVADLVCYLLSDRAS---YITGVTTNIAGG 262 (266)
T ss_pred ccccc----------CCCCCCHHHhhhheeeeeccccc---cceeeEEEecCc
Confidence 00111 12356779999999998865422 234577877665
|
|
| >PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.5e-17 Score=162.97 Aligned_cols=222 Identities=17% Similarity=0.118 Sum_probs=150.4
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhh-ccCCeEEEEecCCCHHHHHHhhccC--
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLL-QKHQVFIVEGDLNDAPLLTKLFDVV-- 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~v~~v~~Dl~d~~~l~~~~~~~-- 192 (469)
.++++++||||+|+||++++++|+++|++|++.++.... .......... ...++.++.+|++|.+.++++++.+
T Consensus 10 l~~k~~lVTGas~gIG~~ia~~L~~~Ga~Vv~~~~~~~~---~~~~~~~~i~~~g~~~~~~~~Dv~d~~~~~~~~~~~~~ 86 (306)
T PRK07792 10 LSGKVAVVTGAAAGLGRAEALGLARLGATVVVNDVASAL---DASDVLDEIRAAGAKAVAVAGDISQRATADELVATAVG 86 (306)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEecCCchh---HHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHH
Confidence 678999999999999999999999999999999875321 1111112221 1346889999999999988887642
Q ss_pred --CccEEEEcccccChh----hhccChHHHHHHHHHHHHHHHHHHHhc--------C--CCCeEEEEcCccccCCCCCCC
Q 012176 193 --PFTHVLHLAAQAGVR----YAMQNPQSYVASNIAGFVNLLEVCKSV--------N--PQPSIVWASSSSVYGLNTQVP 256 (469)
Q Consensus 193 --~~d~Vih~Aa~~~~~----~~~~~~~~~~~~Nv~~~~~ll~aa~~~--------~--~~~~~V~~SS~~vyg~~~~~~ 256 (469)
++|+||||||..... ...++++..+++|+.++..+++++... + ..++||++||...+.+.
T Consensus 87 ~g~iD~li~nAG~~~~~~~~~~~~~~~~~~~~vn~~g~~~l~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~---- 162 (306)
T PRK07792 87 LGGLDIVVNNAGITRDRMLFNMSDEEWDAVIAVHLRGHFLLTRNAAAYWRAKAKAAGGPVYGRIVNTSSEAGLVGP---- 162 (306)
T ss_pred hCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhcccCCCCCcEEEEECCcccccCC----
Confidence 579999999975432 233456678999999999999886421 1 11389999997654322
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCC
Q 012176 257 FSESHRTDQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDR 333 (469)
Q Consensus 257 ~~E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 333 (469)
.....|+.+|.+.+.+++.++.+ +|+++++|+|+. -.+ . ...+....+. . .
T Consensus 163 --------~~~~~Y~asKaal~~l~~~la~e~~~~gI~vn~i~Pg~-~t~------~----~~~~~~~~~~-~------~ 216 (306)
T PRK07792 163 --------VGQANYGAAKAGITALTLSAARALGRYGVRANAICPRA-RTA------M----TADVFGDAPD-V------E 216 (306)
T ss_pred --------CCCchHHHHHHHHHHHHHHHHHHhhhcCeEEEEECCCC-CCc------h----hhhhccccch-h------h
Confidence 23457999999999999988875 589999999973 111 0 0011010000 0 0
Q ss_pred cceEecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCC
Q 012176 334 EVARDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNT 373 (469)
Q Consensus 334 ~~~~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~ 373 (469)
.....++.++|++.++..++..... ...|++|.+.++
T Consensus 217 ~~~~~~~~pe~va~~v~~L~s~~~~---~~tG~~~~v~gg 253 (306)
T PRK07792 217 AGGIDPLSPEHVVPLVQFLASPAAA---EVNGQVFIVYGP 253 (306)
T ss_pred hhccCCCCHHHHHHHHHHHcCcccc---CCCCCEEEEcCC
Confidence 1112346799999998887754321 234567766543
|
|
| >TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.8e-17 Score=178.52 Aligned_cols=238 Identities=16% Similarity=0.121 Sum_probs=158.6
Q ss_pred CCCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhh---ccCCeEEEEecCCCHHHHHHhhc
Q 012176 114 RRPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLL---QKHQVFIVEGDLNDAPLLTKLFD 190 (469)
Q Consensus 114 ~~~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~---~~~~v~~v~~Dl~d~~~l~~~~~ 190 (469)
...++|+||||||+|+||++++++|+++|++|++++|+... ......... ....+..+.+|++|.+++.++++
T Consensus 410 ~~l~gkvvLVTGasggIG~aiA~~La~~Ga~Vvi~~r~~~~----~~~~~~~l~~~~~~~~~~~v~~Dvtd~~~v~~a~~ 485 (676)
T TIGR02632 410 KTLARRVAFVTGGAGGIGRETARRLAAEGAHVVLADLNLEA----AEAVAAEINGQFGAGRAVALKMDVTDEQAVKAAFA 485 (676)
T ss_pred cCCCCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEeCCHHH----HHHHHHHHHhhcCCCcEEEEECCCCCHHHHHHHHH
Confidence 34568999999999999999999999999999999985431 121112211 22357789999999999998887
Q ss_pred cC-----CccEEEEcccccChh----hhccChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEEcCccccCCCCCCCC
Q 012176 191 VV-----PFTHVLHLAAQAGVR----YAMQNPQSYVASNIAGFVNLLEVC----KSVNPQPSIVWASSSSVYGLNTQVPF 257 (469)
Q Consensus 191 ~~-----~~d~Vih~Aa~~~~~----~~~~~~~~~~~~Nv~~~~~ll~aa----~~~~~~~~~V~~SS~~vyg~~~~~~~ 257 (469)
.+ ++|+||||||..... ...++.+..+++|+.+...++..+ ++.+..++||++||...+.+.
T Consensus 486 ~i~~~~g~iDilV~nAG~~~~~~~~~~~~e~~~~~~~vN~~g~~~l~~~al~~m~~~~~~g~IV~iSS~~a~~~~----- 560 (676)
T TIGR02632 486 DVALAYGGVDIVVNNAGIATSSPFEETTLQEWQLNLDILATGYFLVAREAFRQMREQGLGGNIVFIASKNAVYAG----- 560 (676)
T ss_pred HHHHhcCCCcEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeChhhcCCC-----
Confidence 54 579999999974321 122344567889999887776543 344433489999996543221
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeccee-cCCCCCCChHHHHHHHHHcCCce----EEEee
Q 012176 258 SESHRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVY-GPWGRPDMAYFFFTKDILQGKTI----DVYKT 329 (469)
Q Consensus 258 ~E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~-Gp~~~~~~~~~~~~~~~~~g~~~----~~~~~ 329 (469)
.....|+.+|.+.+.+++.++.++ |++++.|+|+.|+ |.+.......... ....+... ..+
T Consensus 561 -------~~~~aY~aSKaA~~~l~r~lA~el~~~gIrVn~V~Pg~V~~~s~~~~~~~~~~~--~~~~~~~~~~~~~~~-- 629 (676)
T TIGR02632 561 -------KNASAYSAAKAAEAHLARCLAAEGGTYGIRVNTVNPDAVLQGSGIWDGEWREER--AAAYGIPADELEEHY-- 629 (676)
T ss_pred -------CCCHHHHHHHHHHHHHHHHHHHHhcccCeEEEEEECCceecCcccccccchhhh--hhcccCChHHHHHHH--
Confidence 235789999999999999998764 7999999999987 4322111000000 00000000 000
Q ss_pred CCCCcceEecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCCc
Q 012176 330 QDDREVARDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTSP 375 (469)
Q Consensus 330 ~~~~~~~~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~~ 375 (469)
........+++++|+|++++.++..... ...|.++++.++..
T Consensus 630 -~~r~~l~r~v~peDVA~av~~L~s~~~~---~~TG~~i~vDGG~~ 671 (676)
T TIGR02632 630 -AKRTLLKRHIFPADIAEAVFFLASSKSE---KTTGCIITVDGGVP 671 (676)
T ss_pred -HhcCCcCCCcCHHHHHHHHHHHhCCccc---CCcCcEEEECCCch
Confidence 0122234568899999999988764321 23458999988753
|
|
| >PRK07831 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.6e-17 Score=158.93 Aligned_cols=226 Identities=15% Similarity=0.085 Sum_probs=158.1
Q ss_pred CCCCEEEEEcCCC-hhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhh---ccCCeEEEEecCCCHHHHHHhhcc
Q 012176 116 PNGMTVLVTGAAG-FVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLL---QKHQVFIVEGDLNDAPLLTKLFDV 191 (469)
Q Consensus 116 ~~~~~VlVtGatG-~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~---~~~~v~~v~~Dl~d~~~l~~~~~~ 191 (469)
..+++++||||+| .||.++++.|+++|++|++++|+... +........ ...++.++.+|++|++.++++++.
T Consensus 15 ~~~k~vlItG~sg~gIG~~ia~~l~~~G~~V~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~ 90 (262)
T PRK07831 15 LAGKVVLVTAAAGTGIGSATARRALEEGARVVISDIHERR----LGETADELAAELGLGRVEAVVCDVTSEAQVDALIDA 90 (262)
T ss_pred cCCCEEEEECCCcccHHHHHHHHHHHcCCEEEEEeCCHHH----HHHHHHHHHHhcCCceEEEEEccCCCHHHHHHHHHH
Confidence 4578999999997 79999999999999999999885432 222222111 123688999999999999888865
Q ss_pred C-----CccEEEEcccccCh----hhhccChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEEcCccccCCCCCCCCC
Q 012176 192 V-----PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCKS----VNPQPSIVWASSSSVYGLNTQVPFS 258 (469)
Q Consensus 192 ~-----~~d~Vih~Aa~~~~----~~~~~~~~~~~~~Nv~~~~~ll~aa~~----~~~~~~~V~~SS~~vyg~~~~~~~~ 258 (469)
+ ++|+||||||.... ....++.+..+++|+.++..+++++.. .+..++||++||...+-..
T Consensus 91 ~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~iv~~ss~~~~~~~------ 164 (262)
T PRK07831 91 AVERLGRLDVLVNNAGLGGQTPVVDMTDDEWSRVLDVTLTGTFRATRAALRYMRARGHGGVIVNNASVLGWRAQ------ 164 (262)
T ss_pred HHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEeCchhhcCCC------
Confidence 3 67999999996432 122344567889999999998887643 2213489999986543211
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcc
Q 012176 259 ESHRTDQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREV 335 (469)
Q Consensus 259 E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 335 (469)
.+...|+.+|.+.+.+++.++.+ +|+++++|+||.+..|...... .......+....++
T Consensus 165 ------~~~~~Y~~sKaal~~~~~~la~e~~~~gI~v~~i~Pg~~~t~~~~~~~-~~~~~~~~~~~~~~----------- 226 (262)
T PRK07831 165 ------HGQAHYAAAKAGVMALTRCSALEAAEYGVRINAVAPSIAMHPFLAKVT-SAELLDELAAREAF----------- 226 (262)
T ss_pred ------CCCcchHHHHHHHHHHHHHHHHHhCccCeEEEEEeeCCccCccccccc-CHHHHHHHHhcCCC-----------
Confidence 34567999999999999999876 5899999999999988533211 12233333333221
Q ss_pred eEecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCC
Q 012176 336 ARDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNT 373 (469)
Q Consensus 336 ~~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~ 373 (469)
..+...+|++++++.++..... -..|+++.+.++
T Consensus 227 -~r~~~p~~va~~~~~l~s~~~~---~itG~~i~v~~~ 260 (262)
T PRK07831 227 -GRAAEPWEVANVIAFLASDYSS---YLTGEVVSVSSQ 260 (262)
T ss_pred -CCCcCHHHHHHHHHHHcCchhc---CcCCceEEeCCC
Confidence 1245679999999998865432 234577766653
|
|
| >PRK08251 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.3e-17 Score=159.45 Aligned_cols=198 Identities=15% Similarity=0.101 Sum_probs=145.0
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhh---ccCCeEEEEecCCCHHHHHHhhccC--
Q 012176 118 GMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLL---QKHQVFIVEGDLNDAPLLTKLFDVV-- 192 (469)
Q Consensus 118 ~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~---~~~~v~~v~~Dl~d~~~l~~~~~~~-- 192 (469)
+++|+||||+|+||++++++|+++|++|++++|+... ......... ....+.++.+|++|++++.++++..
T Consensus 2 ~k~vlItGas~giG~~la~~l~~~g~~v~~~~r~~~~----~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 77 (248)
T PRK08251 2 RQKILITGASSGLGAGMAREFAAKGRDLALCARRTDR----LEELKAELLARYPGIKVAVAALDVNDHDQVFEVFAEFRD 77 (248)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHH----HHHHHHHHHhhCCCceEEEEEcCCCCHHHHHHHHHHHHH
Confidence 5789999999999999999999999999999985432 121111111 1346889999999999988887743
Q ss_pred ---CccEEEEcccccChh----hhccChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEEcCccccCCCCCCCCCCCC
Q 012176 193 ---PFTHVLHLAAQAGVR----YAMQNPQSYVASNIAGFVNLLEVCK----SVNPQPSIVWASSSSVYGLNTQVPFSESH 261 (469)
Q Consensus 193 ---~~d~Vih~Aa~~~~~----~~~~~~~~~~~~Nv~~~~~ll~aa~----~~~~~~~~V~~SS~~vyg~~~~~~~~E~~ 261 (469)
++|+||||||..... ...+..+..+++|+.++..+++++. +.+.. +||++||.....+..
T Consensus 78 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~-~iv~~sS~~~~~~~~-------- 148 (248)
T PRK08251 78 ELGGLDRVIVNAGIGKGARLGTGKFWANKATAETNFVAALAQCEAAMEIFREQGSG-HLVLISSVSAVRGLP-------- 148 (248)
T ss_pred HcCCCCEEEECCCcCCCCCcCcCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCC-eEEEEeccccccCCC--------
Confidence 579999999974322 1123345688999999999988764 34544 899999965432210
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceEe
Q 012176 262 RTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARD 338 (469)
Q Consensus 262 ~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 338 (469)
.+...|+.+|.+.+.+++.++.++ ++++++++||+|.++.... . +. ...
T Consensus 149 ---~~~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~pg~v~t~~~~~----------~--~~-------------~~~ 200 (248)
T PRK08251 149 ---GVKAAYAASKAGVASLGEGLRAELAKTPIKVSTIEPGYIRSEMNAK----------A--KS-------------TPF 200 (248)
T ss_pred ---CCcccHHHHHHHHHHHHHHHHHHhcccCcEEEEEecCcCcchhhhc----------c--cc-------------CCc
Confidence 234679999999999999888664 6999999999998763221 0 00 012
Q ss_pred cccHHHHHHHHHHHhccC
Q 012176 339 FTYIDDVVKGCVGATGSG 356 (469)
Q Consensus 339 ~v~v~Dva~~~~~~~~~~ 356 (469)
.+..+|.|+.++.++++.
T Consensus 201 ~~~~~~~a~~i~~~~~~~ 218 (248)
T PRK08251 201 MVDTETGVKALVKAIEKE 218 (248)
T ss_pred cCCHHHHHHHHHHHHhcC
Confidence 467899999999999765
|
|
| >PRK07062 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.1e-17 Score=158.65 Aligned_cols=229 Identities=13% Similarity=0.048 Sum_probs=155.5
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhc---cCCeEEEEecCCCHHHHHHhhccC
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQ---KHQVFIVEGDLNDAPLLTKLFDVV 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~---~~~v~~v~~Dl~d~~~l~~~~~~~ 192 (469)
.++++++||||+|+||.+++++|+++|++|++++|+.+.. ......... ..++..+.+|++|.++++++++.+
T Consensus 6 l~~k~~lItGas~giG~~ia~~l~~~G~~V~~~~r~~~~~----~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~ 81 (265)
T PRK07062 6 LEGRVAVVTGGSSGIGLATVELLLEAGASVAICGRDEERL----ASAEARLREKFPGARLLAARCDVLDEADVAAFAAAV 81 (265)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHH----HHHHHHHHhhCCCceEEEEEecCCCHHHHHHHHHHH
Confidence 5678999999999999999999999999999999965422 221221111 236788999999999988877643
Q ss_pred -----CccEEEEcccccChh----hhccChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEEcCccccCCCCCCCCCC
Q 012176 193 -----PFTHVLHLAAQAGVR----YAMQNPQSYVASNIAGFVNLLEVCK----SVNPQPSIVWASSSSVYGLNTQVPFSE 259 (469)
Q Consensus 193 -----~~d~Vih~Aa~~~~~----~~~~~~~~~~~~Nv~~~~~ll~aa~----~~~~~~~~V~~SS~~vyg~~~~~~~~E 259 (469)
++|+||||||..... ...++....+++|+.+...+++++. +.+. ++||++||...+.+.
T Consensus 82 ~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~-g~iv~isS~~~~~~~------- 153 (265)
T PRK07062 82 EARFGGVDMLVNNAGQGRVSTFADTTDDAWRDELELKYFSVINPTRAFLPLLRASAA-ASIVCVNSLLALQPE------- 153 (265)
T ss_pred HHhcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhccCC-cEEEEeccccccCCC-------
Confidence 579999999974321 1233456778899888777776643 3333 389999997665322
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeecceecCCCCC--------CChHHHHHHHHHcCCceEEEe
Q 012176 260 SHRTDQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRP--------DMAYFFFTKDILQGKTIDVYK 328 (469)
Q Consensus 260 ~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~Gp~~~~--------~~~~~~~~~~~~~g~~~~~~~ 328 (469)
.....|+.+|.+.+.+++.++.+ .|++++.|+||.|..+.... +..+..+.+.+.....++
T Consensus 154 -----~~~~~y~asKaal~~~~~~la~e~~~~gi~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p--- 225 (265)
T PRK07062 154 -----PHMVATSAARAGLLNLVKSLATELAPKGVRVNSILLGLVESGQWRRRYEARADPGQSWEAWTAALARKKGIP--- 225 (265)
T ss_pred -----CCchHhHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCccccchhhhHHHHhhccCCChHHHHHHHhhcCCCC---
Confidence 23467999999999999988766 38999999999997763211 001111111111111111
Q ss_pred eCCCCcceEecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCC
Q 012176 329 TQDDREVARDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTS 374 (469)
Q Consensus 329 ~~~~~~~~~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~ 374 (469)
...+...+|++++++.++..... -..|+++.+.++.
T Consensus 226 -------~~r~~~p~~va~~~~~L~s~~~~---~~tG~~i~vdgg~ 261 (265)
T PRK07062 226 -------LGRLGRPDEAARALFFLASPLSS---YTTGSHIDVSGGF 261 (265)
T ss_pred -------cCCCCCHHHHHHHHHHHhCchhc---ccccceEEEcCce
Confidence 12356789999999988764321 2445888877653
|
|
| >PRK06505 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.7e-17 Score=158.88 Aligned_cols=228 Identities=12% Similarity=0.052 Sum_probs=154.3
Q ss_pred CCCCEEEEEcCCC--hhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccC-
Q 012176 116 PNGMTVLVTGAAG--FVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV- 192 (469)
Q Consensus 116 ~~~~~VlVtGatG--~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~- 192 (469)
.++|++|||||++ .||+.++++|+++|++|++.+|+... ......... .......+.+|++|.++++++++.+
T Consensus 5 l~~k~~lVTGas~~~GIG~aiA~~la~~Ga~V~~~~r~~~~-~~~~~~~~~---~~g~~~~~~~Dv~d~~~v~~~~~~~~ 80 (271)
T PRK06505 5 MQGKRGLIMGVANDHSIAWGIAKQLAAQGAELAFTYQGEAL-GKRVKPLAE---SLGSDFVLPCDVEDIASVDAVFEALE 80 (271)
T ss_pred cCCCEEEEeCCCCCCcHHHHHHHHHHhCCCEEEEecCchHH-HHHHHHHHH---hcCCceEEeCCCCCHHHHHHHHHHHH
Confidence 5678999999997 99999999999999999999885321 111111111 1122357899999999988888653
Q ss_pred ----CccEEEEcccccCh--------hhhccChHHHHHHHHHHHHHHHHHHHhcC-CCCeEEEEcCccccCCCCCCCCCC
Q 012176 193 ----PFTHVLHLAAQAGV--------RYAMQNPQSYVASNIAGFVNLLEVCKSVN-PQPSIVWASSSSVYGLNTQVPFSE 259 (469)
Q Consensus 193 ----~~d~Vih~Aa~~~~--------~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~-~~~~~V~~SS~~vyg~~~~~~~~E 259 (469)
++|++|||||.... ....++++..+++|+.++..+++++...- ..++||++||.+.....
T Consensus 81 ~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~m~~~G~Iv~isS~~~~~~~------- 153 (271)
T PRK06505 81 KKWGKLDFVVHAIGFSDKNELKGRYADTTRENFSRTMVISCFSFTEIAKRAAKLMPDGGSMLTLTYGGSTRVM------- 153 (271)
T ss_pred HHhCCCCEEEECCccCCCccccCChhhcCHHHHHHHHhhhhhhHHHHHHHHHHhhccCceEEEEcCCCccccC-------
Confidence 68999999996431 12344566789999999999988765321 12489999996543211
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcce
Q 012176 260 SHRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVA 336 (469)
Q Consensus 260 ~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 336 (469)
.....|+.+|.+.+.+++.++.++ ||+++.|.||.|-.+...................|+
T Consensus 154 -----~~~~~Y~asKaAl~~l~r~la~el~~~gIrVn~v~PG~i~T~~~~~~~~~~~~~~~~~~~~p~------------ 216 (271)
T PRK06505 154 -----PNYNVMGVAKAALEASVRYLAADYGPQGIRVNAISAGPVRTLAGAGIGDARAIFSYQQRNSPL------------ 216 (271)
T ss_pred -----CccchhhhhHHHHHHHHHHHHHHHhhcCeEEEEEecCCccccccccCcchHHHHHHHhhcCCc------------
Confidence 234679999999999999998774 799999999999776422100001111111111121
Q ss_pred EecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCC
Q 012176 337 RDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTS 374 (469)
Q Consensus 337 ~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~ 374 (469)
..+...+|+|++++.++..... ...|+++.+.++.
T Consensus 217 ~r~~~peeva~~~~fL~s~~~~---~itG~~i~vdgG~ 251 (271)
T PRK06505 217 RRTVTIDEVGGSALYLLSDLSS---GVTGEIHFVDSGY 251 (271)
T ss_pred cccCCHHHHHHHHHHHhCcccc---ccCceEEeecCCc
Confidence 1245689999999998764321 2345778777654
|
|
| >PRK06139 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.6e-17 Score=165.81 Aligned_cols=207 Identities=14% Similarity=0.137 Sum_probs=149.6
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhh-ccCCeEEEEecCCCHHHHHHhhccC--
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLL-QKHQVFIVEGDLNDAPLLTKLFDVV-- 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~v~~v~~Dl~d~~~l~~~~~~~-- 192 (469)
..+++|+||||+|+||+++++.|+++|++|++++|+.+. +........ ....+.++.+|++|.++++++++..
T Consensus 5 l~~k~vlITGAs~GIG~aia~~la~~G~~Vvl~~R~~~~----l~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~~~~~~ 80 (330)
T PRK06139 5 LHGAVVVITGASSGIGQATAEAFARRGARLVLAARDEEA----LQAVAEECRALGAEVLVVPTDVTDADQVKALATQAAS 80 (330)
T ss_pred CCCCEEEEcCCCCHHHHHHHHHHHHCCCEEEEEECCHHH----HHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHH
Confidence 567899999999999999999999999999999995432 222212111 1336788999999999999888642
Q ss_pred ---CccEEEEcccccChh----hhccChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEEcCccccCCCCCCCCCCCC
Q 012176 193 ---PFTHVLHLAAQAGVR----YAMQNPQSYVASNIAGFVNLLEVCK----SVNPQPSIVWASSSSVYGLNTQVPFSESH 261 (469)
Q Consensus 193 ---~~d~Vih~Aa~~~~~----~~~~~~~~~~~~Nv~~~~~ll~aa~----~~~~~~~~V~~SS~~vyg~~~~~~~~E~~ 261 (469)
++|++|||||..... ...++.+..+++|+.++.++++++. +.+. ++||++||...+.+.
T Consensus 81 ~~g~iD~lVnnAG~~~~~~~~~~~~e~~~~~~~vN~~g~~~~~~~~lp~~~~~~~-g~iV~isS~~~~~~~--------- 150 (330)
T PRK06139 81 FGGRIDVWVNNVGVGAVGRFEETPIEAHEQVIQTNLIGYMRDAHAALPIFKKQGH-GIFINMISLGGFAAQ--------- 150 (330)
T ss_pred hcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCC-CEEEEEcChhhcCCC---------
Confidence 579999999964332 1223445789999999999887753 3343 389999997766432
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHh----CCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceE
Q 012176 262 RTDQPASLYAATKKAGEEIAHTYNHIY----GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVAR 337 (469)
Q Consensus 262 ~~~~p~~~Y~~sK~~~E~~~~~~~~~~----gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 337 (469)
.....|+.+|.+.+.+.+.++.+. |++++.|+||.|.+|....... + .+.. .....
T Consensus 151 ---p~~~~Y~asKaal~~~~~sL~~El~~~~gI~V~~v~Pg~v~T~~~~~~~~---~-----~~~~---------~~~~~ 210 (330)
T PRK06139 151 ---PYAAAYSASKFGLRGFSEALRGELADHPDIHVCDVYPAFMDTPGFRHGAN---Y-----TGRR---------LTPPP 210 (330)
T ss_pred ---CCchhHHHHHHHHHHHHHHHHHHhCCCCCeEEEEEecCCccCcccccccc---c-----cccc---------ccCCC
Confidence 234679999999888888887652 7999999999998885432100 0 0100 01112
Q ss_pred ecccHHHHHHHHHHHhccC
Q 012176 338 DFTYIDDVVKGCVGATGSG 356 (469)
Q Consensus 338 ~~v~v~Dva~~~~~~~~~~ 356 (469)
....++|+|++++.+++++
T Consensus 211 ~~~~pe~vA~~il~~~~~~ 229 (330)
T PRK06139 211 PVYDPRRVAKAVVRLADRP 229 (330)
T ss_pred CCCCHHHHHHHHHHHHhCC
Confidence 3578999999999999876
|
|
| >PRK08340 glucose-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.5e-17 Score=157.85 Aligned_cols=226 Identities=16% Similarity=0.142 Sum_probs=151.4
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccC-----C
Q 012176 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV-----P 193 (469)
Q Consensus 119 ~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~-----~ 193 (469)
|+|+||||+|.||+.++++|+++|++|++++|+.. .+.+.........++.++.+|++|.++++++++.+ +
T Consensus 1 m~vlItGas~gIG~aia~~l~~~G~~V~~~~r~~~----~~~~~~~~l~~~~~~~~~~~Dv~d~~~~~~~~~~~~~~~g~ 76 (259)
T PRK08340 1 MNVLVTASSRGIGFNVARELLKKGARVVISSRNEE----NLEKALKELKEYGEVYAVKADLSDKDDLKNLVKEAWELLGG 76 (259)
T ss_pred CeEEEEcCCcHHHHHHHHHHHHcCCEEEEEeCCHH----HHHHHHHHHHhcCCceEEEcCCCCHHHHHHHHHHHHHhcCC
Confidence 68999999999999999999999999999998543 22222222222336889999999999998888643 6
Q ss_pred ccEEEEcccccChh---h---hccChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEEcCccccCCCCCCCCCCCCCC
Q 012176 194 FTHVLHLAAQAGVR---Y---AMQNPQSYVASNIAGFVNLLEVC----KSVNPQPSIVWASSSSVYGLNTQVPFSESHRT 263 (469)
Q Consensus 194 ~d~Vih~Aa~~~~~---~---~~~~~~~~~~~Nv~~~~~ll~aa----~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~ 263 (469)
+|+||||||..... . ..++....+.+|+.+...+..++ .+.+..++||++||...+.+.
T Consensus 77 id~li~naG~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~~g~iv~isS~~~~~~~----------- 145 (259)
T PRK08340 77 IDALVWNAGNVRCEPCMLHEAGYSDWLEAALLHLVAPGYLTTLLIQAWLEKKMKGVLVYLSSVSVKEPM----------- 145 (259)
T ss_pred CCEEEECCCCCCCCccccccccHHHHHHHHhhcchHHHHHHHHHHHHHHhcCCCCEEEEEeCcccCCCC-----------
Confidence 89999999964211 1 12233456677887766555432 222223489999998765321
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCCCCC---------hHHH-HHHHHHcCCceEEEeeC
Q 012176 264 DQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDM---------AYFF-FTKDILQGKTIDVYKTQ 330 (469)
Q Consensus 264 ~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~~~~---------~~~~-~~~~~~~g~~~~~~~~~ 330 (469)
.+...|+.+|.+.+.+++.++.++ |++++.|.||.+-.+...... .... ..+.+....|
T Consensus 146 -~~~~~y~~sKaa~~~~~~~la~e~~~~gI~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p------- 217 (259)
T PRK08340 146 -PPLVLADVTRAGLVQLAKGVSRTYGGKGIRAYTVLLGSFDTPGARENLARIAEERGVSFEETWEREVLERTP------- 217 (259)
T ss_pred -CCchHHHHHHHHHHHHHHHHHHHhCCCCEEEEEeccCcccCccHHHHHHhhhhccCCchHHHHHHHHhccCC-------
Confidence 335679999999999999999875 799999999998776432100 0000 0111111111
Q ss_pred CCCcceEecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCCc
Q 012176 331 DDREVARDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTSP 375 (469)
Q Consensus 331 ~~~~~~~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~~ 375 (469)
...+..++|+|++++.++..... -..|++..+.++..
T Consensus 218 -----~~r~~~p~dva~~~~fL~s~~~~---~itG~~i~vdgg~~ 254 (259)
T PRK08340 218 -----LKRTGRWEELGSLIAFLLSENAE---YMLGSTIVFDGAMT 254 (259)
T ss_pred -----ccCCCCHHHHHHHHHHHcCcccc---cccCceEeecCCcC
Confidence 12356789999999988865432 34557777776643
|
|
| >PRK08690 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.5e-17 Score=157.41 Aligned_cols=228 Identities=10% Similarity=0.034 Sum_probs=152.5
Q ss_pred CCCCCEEEEEcC--CChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhh-ccCCeEEEEecCCCHHHHHHhhcc
Q 012176 115 RPNGMTVLVTGA--AGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLL-QKHQVFIVEGDLNDAPLLTKLFDV 191 (469)
Q Consensus 115 ~~~~~~VlVtGa--tG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~v~~v~~Dl~d~~~l~~~~~~ 191 (469)
+.++++++|||| ++.||++++++|+++|++|++..|... ......... +......+.+|++|+++++++++.
T Consensus 3 ~~~~k~~lITGa~~~~GIG~a~a~~l~~~G~~v~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~ 77 (261)
T PRK08690 3 FLQGKKILITGMISERSIAYGIAKACREQGAELAFTYVVDK-----LEERVRKMAAELDSELVFRCDVASDDEINQVFAD 77 (261)
T ss_pred ccCCcEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCcHH-----HHHHHHHHHhccCCceEEECCCCCHHHHHHHHHH
Confidence 367889999997 679999999999999999999876321 111111111 112456789999999999888865
Q ss_pred C-----CccEEEEcccccChh---------hhccChHHHHHHHHHHHHHHHHHHHhc--CCCCeEEEEcCccccCCCCCC
Q 012176 192 V-----PFTHVLHLAAQAGVR---------YAMQNPQSYVASNIAGFVNLLEVCKSV--NPQPSIVWASSSSVYGLNTQV 255 (469)
Q Consensus 192 ~-----~~d~Vih~Aa~~~~~---------~~~~~~~~~~~~Nv~~~~~ll~aa~~~--~~~~~~V~~SS~~vyg~~~~~ 255 (469)
+ ++|++|||||..... ...+..+..+++|+.+...+.+++... ...++||++||.+.+.+.
T Consensus 78 ~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~l~~~~~p~m~~~~g~Iv~iss~~~~~~~--- 154 (261)
T PRK08690 78 LGKHWDGLDGLVHSIGFAPKEALSGDFLDSISREAFNTAHEISAYSLPALAKAARPMMRGRNSAIVALSYLGAVRAI--- 154 (261)
T ss_pred HHHHhCCCcEEEECCccCCccccccchhhhcCHHHHHHHHHhchHHHHHHHHHHHHHhhhcCcEEEEEcccccccCC---
Confidence 3 689999999975321 112234567889999988888765432 112489999987654211
Q ss_pred CCCCCCCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCC
Q 012176 256 PFSESHRTDQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDD 332 (469)
Q Consensus 256 ~~~E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 332 (469)
.....|+.+|.+.+.+++.++.+ +|++++.|.||.|-.+............+.+....|+
T Consensus 155 ---------~~~~~Y~asKaal~~l~~~la~e~~~~gIrVn~i~PG~v~T~~~~~~~~~~~~~~~~~~~~p~-------- 217 (261)
T PRK08690 155 ---------PNYNVMGMAKASLEAGIRFTAACLGKEGIRCNGISAGPIKTLAASGIADFGKLLGHVAAHNPL-------- 217 (261)
T ss_pred ---------CCcccchhHHHHHHHHHHHHHHHhhhcCeEEEEEecCcccchhhhcCCchHHHHHHHhhcCCC--------
Confidence 23467999999999999988754 4899999999999776321100001122222221111
Q ss_pred CcceEecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCC
Q 012176 333 REVARDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTS 374 (469)
Q Consensus 333 ~~~~~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~ 374 (469)
..+..++|+|++++.++..... ...|+++-+.++.
T Consensus 218 ----~r~~~peevA~~v~~l~s~~~~---~~tG~~i~vdgG~ 252 (261)
T PRK08690 218 ----RRNVTIEEVGNTAAFLLSDLSS---GITGEITYVDGGY 252 (261)
T ss_pred ----CCCCCHHHHHHHHHHHhCcccC---CcceeEEEEcCCc
Confidence 2356789999999999875432 2345777776654
|
|
| >PRK05693 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.1e-17 Score=162.67 Aligned_cols=164 Identities=17% Similarity=0.168 Sum_probs=127.1
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccC-----C
Q 012176 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV-----P 193 (469)
Q Consensus 119 ~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~-----~ 193 (469)
|+|+||||+|+||+++++.|+++|++|++++|+.. ... .+...++.++.+|++|.++++++++.+ +
T Consensus 2 k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~----~~~-----~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 72 (274)
T PRK05693 2 PVVLITGCSSGIGRALADAFKAAGYEVWATARKAE----DVE-----ALAAAGFTAVQLDVNDGAALARLAEELEAEHGG 72 (274)
T ss_pred CEEEEecCCChHHHHHHHHHHHCCCEEEEEeCCHH----HHH-----HHHHCCCeEEEeeCCCHHHHHHHHHHHHHhcCC
Confidence 68999999999999999999999999999998532 111 111236788999999999998888654 6
Q ss_pred ccEEEEcccccChh----hhccChHHHHHHHHHHHHHHHHHHHh---cCCCCeEEEEcCccccCCCCCCCCCCCCCCCCC
Q 012176 194 FTHVLHLAAQAGVR----YAMQNPQSYVASNIAGFVNLLEVCKS---VNPQPSIVWASSSSVYGLNTQVPFSESHRTDQP 266 (469)
Q Consensus 194 ~d~Vih~Aa~~~~~----~~~~~~~~~~~~Nv~~~~~ll~aa~~---~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p 266 (469)
+|+||||||..... ...++.+..+++|+.++.++++++.. .+. +++|++||...+... ..
T Consensus 73 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~-g~iv~isS~~~~~~~------------~~ 139 (274)
T PRK05693 73 LDVLINNAGYGAMGPLLDGGVEAMRRQFETNVFAVVGVTRALFPLLRRSR-GLVVNIGSVSGVLVT------------PF 139 (274)
T ss_pred CCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcC-CEEEEECCccccCCC------------CC
Confidence 89999999964321 22345567899999999999988643 232 389999996544321 23
Q ss_pred CChHHHHHHHHHHHHHHHHHH---hCCcEEEEeecceecCC
Q 012176 267 ASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPW 304 (469)
Q Consensus 267 ~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~Gp~ 304 (469)
...|+.+|.+.+.+++.++.+ +|+++++++||.|..+.
T Consensus 140 ~~~Y~~sK~al~~~~~~l~~e~~~~gi~v~~v~pg~v~t~~ 180 (274)
T PRK05693 140 AGAYCASKAAVHALSDALRLELAPFGVQVMEVQPGAIASQF 180 (274)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEecCcccccc
Confidence 467999999999999888765 58999999999998763
|
|
| >PRK08278 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=6.7e-17 Score=157.20 Aligned_cols=210 Identities=15% Similarity=0.157 Sum_probs=147.7
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChh---HHHHHHHhh-ccCCeEEEEecCCCHHHHHHhhcc
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPS---LKRARQKLL-QKHQVFIVEGDLNDAPLLTKLFDV 191 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~---~~~~~~~~~-~~~~v~~v~~Dl~d~~~l~~~~~~ 191 (469)
..+++++||||+|+||.++++.|+++|++|++++|........ +........ ...++.++.+|++|++++.++++.
T Consensus 4 ~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~ 83 (273)
T PRK08278 4 LSGKTLFITGASRGIGLAIALRAARDGANIVIAAKTAEPHPKLPGTIHTAAEEIEAAGGQALPLVGDVRDEDQVAAAVAK 83 (273)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecccccccchhhHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHH
Confidence 5678999999999999999999999999999999976432211 111111111 133688999999999999888875
Q ss_pred C-----CccEEEEcccccChh----hhccChHHHHHHHHHHHHHHHHHHHhc---CCCCeEEEEcCccccCCCCCCCCCC
Q 012176 192 V-----PFTHVLHLAAQAGVR----YAMQNPQSYVASNIAGFVNLLEVCKSV---NPQPSIVWASSSSVYGLNTQVPFSE 259 (469)
Q Consensus 192 ~-----~~d~Vih~Aa~~~~~----~~~~~~~~~~~~Nv~~~~~ll~aa~~~---~~~~~~V~~SS~~vyg~~~~~~~~E 259 (469)
. ++|+||||||..... ...++.+..+++|+.++.++++++... ....++|++||.......
T Consensus 84 ~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~~~g~iv~iss~~~~~~~------- 156 (273)
T PRK08278 84 AVERFGGIDICVNNASAINLTGTEDTPMKRFDLMQQINVRGTFLVSQACLPHLKKSENPHILTLSPPLNLDPK------- 156 (273)
T ss_pred HHHHhCCCCEEEECCCCcCCCCcccCCHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCEEEEECCchhcccc-------
Confidence 4 689999999974322 223345678899999999999998642 112389999985422110
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecc-eecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcc
Q 012176 260 SHRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFT-VYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREV 335 (469)
Q Consensus 260 ~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~-v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 335 (469)
. ..+...|+.+|.+.|.+++.++.++ +++++.|+||. +-.+ +.+....+. ..
T Consensus 157 --~-~~~~~~Y~~sK~a~~~~~~~la~el~~~~I~v~~i~Pg~~i~t~----------~~~~~~~~~-----------~~ 212 (273)
T PRK08278 157 --W-FAPHTAYTMAKYGMSLCTLGLAEEFRDDGIAVNALWPRTTIATA----------AVRNLLGGD-----------EA 212 (273)
T ss_pred --c-cCCcchhHHHHHHHHHHHHHHHHHhhhcCcEEEEEeCCCccccH----------HHHhccccc-----------cc
Confidence 0 0345789999999999999998775 79999999984 3332 111111111 11
Q ss_pred eEecccHHHHHHHHHHHhccC
Q 012176 336 ARDFTYIDDVVKGCVGATGSG 356 (469)
Q Consensus 336 ~~~~v~v~Dva~~~~~~~~~~ 356 (469)
...+...+|++++++.++...
T Consensus 213 ~~~~~~p~~va~~~~~l~~~~ 233 (273)
T PRK08278 213 MRRSRTPEIMADAAYEILSRP 233 (273)
T ss_pred ccccCCHHHHHHHHHHHhcCc
Confidence 123567899999999988765
|
|
| >KOG3019 consensus Predicted nucleoside-diphosphate sugar epimerase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.7e-18 Score=155.36 Aligned_cols=279 Identities=16% Similarity=0.111 Sum_probs=196.6
Q ss_pred CEEEEEcCCChhHHHHHH-----HHHHCC----CcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhh
Q 012176 119 MTVLVTGAAGFVGSHCSL-----ALKKRG----DGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLF 189 (469)
Q Consensus 119 ~~VlVtGatG~IG~~l~~-----~L~~~G----~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~ 189 (469)
...++-+++|+|+..|.. ++-..+ |+|++++|.+.+. ++.+-+.|..-. ...+.
T Consensus 13 r~a~~~~~~g~i~~nl~~~~~~~H~t~~~~a~~h~vtv~sR~pg~~---------------ritw~el~~~Gi--p~sc~ 75 (315)
T KOG3019|consen 13 RDAVSNWSNGIIRENLGSETSCCHDTNVHSADNHAVTVLSRSPGKA---------------RITWPELDFPGI--PISCV 75 (315)
T ss_pred ccCCCCccccchhccccCcccccccCCCCcccccceEEEecCCCCc---------------ccccchhcCCCC--ceehH
Confidence 456777889999988776 232223 8999999965421 222222221110 00122
Q ss_pred ccCCccEEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCC-eEEEEcCccccCCCCCCCCCCCCCCCCCCC
Q 012176 190 DVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQP-SIVWASSSSVYGLNTQVPFSESHRTDQPAS 268 (469)
Q Consensus 190 ~~~~~d~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~-~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~ 268 (469)
.++ +.+.+|+...--+|+++--++.....+..+..|.++..++.-.+ .+|.+|..++|-+.....++|++.. +..+
T Consensus 76 a~v--na~g~n~l~P~rRWsp~fqkev~gSRi~~t~~la~aI~~aPq~~~~~Vlv~gva~y~pS~s~eY~e~~~~-qgfd 152 (315)
T KOG3019|consen 76 AGV--NAVGNNALLPIRRWSPEFQKEVKGSRIRVTSKLADAINNAPQEARPTVLVSGVAVYVPSESQEYSEKIVH-QGFD 152 (315)
T ss_pred HHH--hhhhhhccCchhhcCHHHHHHhhcceeeHHHHHHHHHhcCCCCCCCeEEEEeeEEecccccccccccccc-CChH
Confidence 222 44455554433355555555666666777999999998876543 6999999999999888899999987 7777
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCcEEEEeecceecCCCCC-CChHHHHHHHHHcCCceEEEeeCCCCcceEecccHHHHHH
Q 012176 269 LYAATKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRP-DMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVK 347 (469)
Q Consensus 269 ~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~Gp~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~ 347 (469)
....-....|..++.-.+ .+++++||.|.|.|.++.. .+++..| ++..|+|+ |+|+|+++|||++|++.
T Consensus 153 ~~srL~l~WE~aA~~~~~--~~r~~~iR~GvVlG~gGGa~~~M~lpF--~~g~GGPl------GsG~Q~fpWIHv~DL~~ 222 (315)
T KOG3019|consen 153 ILSRLCLEWEGAALKANK--DVRVALIRIGVVLGKGGGALAMMILPF--QMGAGGPL------GSGQQWFPWIHVDDLVN 222 (315)
T ss_pred HHHHHHHHHHHHhhccCc--ceeEEEEEEeEEEecCCcchhhhhhhh--hhccCCcC------CCCCeeeeeeehHHHHH
Confidence 788888888888777554 5999999999999987653 2333222 45667777 88999999999999999
Q ss_pred HHHHHhccCCCCCCCCCceEEEeCCCCcccHHHHHHHHHHHhCCCccceeecCCCC------C-CCCcccCChHHHH---
Q 012176 348 GCVGATGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRN------G-DVPYTHANVSLAY--- 417 (469)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~iyni~~~~~vt~~el~~~i~~~~g~~~~~~~~~~~~~------~-~~~~~~~d~~ka~--- 417 (469)
.+..+++++... ++.|-..+++++..||++.+.++++++. ++|.|.. + +.....++..|..
T Consensus 223 li~~ale~~~v~------GViNgvAP~~~~n~Ef~q~lg~aL~Rp~---~~pvP~fvvqA~fG~erA~~vLeGqKV~Pqr 293 (315)
T KOG3019|consen 223 LIYEALENPSVK------GVINGVAPNPVRNGEFCQQLGSALSRPS---WLPVPDFVVQALFGPERATVVLEGQKVLPQR 293 (315)
T ss_pred HHHHHHhcCCCC------ceecccCCCccchHHHHHHHHHHhCCCc---ccCCcHHHHHHHhCccceeEEeeCCcccchh
Confidence 999999997542 8999999999999999999999999886 5555531 2 2222333433321
Q ss_pred -HhcCCCccCc-HHHHHHHHH
Q 012176 418 -KDFGYKPTTD-LAAGLRKFV 436 (469)
Q Consensus 418 -~~LG~~p~~~-l~~~l~~~v 436 (469)
.++||+.++. +.++|++++
T Consensus 294 al~~Gf~f~yp~vk~Al~~i~ 314 (315)
T KOG3019|consen 294 ALELGFEFKYPYVKDALRAIM 314 (315)
T ss_pred HhhcCceeechHHHHHHHHHh
Confidence 4599999986 788888764
|
|
| >PRK08594 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=6.8e-17 Score=155.80 Aligned_cols=229 Identities=12% Similarity=0.045 Sum_probs=154.1
Q ss_pred CCCCEEEEEcCC--ChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccC-
Q 012176 116 PNGMTVLVTGAA--GFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV- 192 (469)
Q Consensus 116 ~~~~~VlVtGat--G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~- 192 (469)
..+|+++||||+ +.||.+++++|+++|++|++++|.... ...+.+.... ....++..+.+|++|+++++++++..
T Consensus 5 ~~~k~~lItGa~~s~GIG~aia~~la~~G~~v~~~~r~~~~-~~~~~~~~~~-~~~~~~~~~~~Dv~d~~~v~~~~~~~~ 82 (257)
T PRK08594 5 LEGKTYVVMGVANKRSIAWGIARSLHNAGAKLVFTYAGERL-EKEVRELADT-LEGQESLLLPCDVTSDEEITACFETIK 82 (257)
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEecCcccc-hHHHHHHHHH-cCCCceEEEecCCCCHHHHHHHHHHHH
Confidence 567899999997 899999999999999999999875321 1222222222 22346888999999999988887643
Q ss_pred ----CccEEEEcccccCh--------hhhccChHHHHHHHHHHHHHHHHHHHhcC-CCCeEEEEcCccccCCCCCCCCCC
Q 012176 193 ----PFTHVLHLAAQAGV--------RYAMQNPQSYVASNIAGFVNLLEVCKSVN-PQPSIVWASSSSVYGLNTQVPFSE 259 (469)
Q Consensus 193 ----~~d~Vih~Aa~~~~--------~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~-~~~~~V~~SS~~vyg~~~~~~~~E 259 (469)
++|++|||||.... +...+.....+++|+.+...+++++...- ..++||++||....-+.
T Consensus 83 ~~~g~ld~lv~nag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~Iv~isS~~~~~~~------- 155 (257)
T PRK08594 83 EEVGVIHGVAHCIAFANKEDLRGEFLETSRDGFLLAQNISAYSLTAVAREAKKLMTEGGSIVTLTYLGGERVV------- 155 (257)
T ss_pred HhCCCccEEEECcccCCCCcCCCccccCCHHHHHHHHhhhHHHHHHHHHHHHHhcccCceEEEEcccCCccCC-------
Confidence 58999999986421 11223345678999999988887765432 12489999996543211
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcce
Q 012176 260 SHRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVA 336 (469)
Q Consensus 260 ~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 336 (469)
.....|+.+|.+.+.+++.++.++ |++++.|+||.|..+..............+....+ .
T Consensus 156 -----~~~~~Y~asKaal~~l~~~la~el~~~gIrvn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~p------------~ 218 (257)
T PRK08594 156 -----QNYNVMGVAKASLEASVKYLANDLGKDGIRVNAISAGPIRTLSAKGVGGFNSILKEIEERAP------------L 218 (257)
T ss_pred -----CCCchhHHHHHHHHHHHHHHHHHhhhcCCEEeeeecCcccCHhHhhhccccHHHHHHhhcCC------------c
Confidence 234579999999999999998764 79999999999977532100000011111111111 1
Q ss_pred EecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCC
Q 012176 337 RDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNT 373 (469)
Q Consensus 337 ~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~ 373 (469)
..+..++|++++++.++..... ...|+++.+.++
T Consensus 219 ~r~~~p~~va~~~~~l~s~~~~---~~tG~~~~~dgg 252 (257)
T PRK08594 219 RRTTTQEEVGDTAAFLFSDLSR---GVTGENIHVDSG 252 (257)
T ss_pred cccCCHHHHHHHHHHHcCcccc---cccceEEEECCc
Confidence 2346789999999998765422 234577777655
|
|
| >TIGR02685 pter_reduc_Leis pteridine reductase | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.6e-17 Score=157.75 Aligned_cols=225 Identities=15% Similarity=0.085 Sum_probs=148.6
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhc--cCCeEEEEecCCCHHHH----HHhhcc-
Q 012176 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQ--KHQVFIVEGDLNDAPLL----TKLFDV- 191 (469)
Q Consensus 119 ~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~--~~~v~~v~~Dl~d~~~l----~~~~~~- 191 (469)
++++||||+|+||.+++++|+++|++|+++.|... +........... ...+.++.+|++|.+.+ +++++.
T Consensus 2 ~~~lITGas~gIG~~~a~~l~~~G~~V~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~~Dv~d~~~~~~~~~~~~~~~ 78 (267)
T TIGR02685 2 PAAVVTGAAKRIGSSIAVALHQEGYRVVLHYHRSA---AAASTLAAELNARRPNSAVTCQADLSNSATLFSRCEAIIDAC 78 (267)
T ss_pred CEEEEeCCCCcHHHHHHHHHHhCCCeEEEEcCCcH---HHHHHHHHHHHhccCCceEEEEccCCCchhhHHHHHHHHHHH
Confidence 47999999999999999999999999999876432 112222222211 23567789999998754 333322
Q ss_pred ----CCccEEEEcccccChhh----hcc-----------ChHHHHHHHHHHHHHHHHHHHhcC---------CCCeEEEE
Q 012176 192 ----VPFTHVLHLAAQAGVRY----AMQ-----------NPQSYVASNIAGFVNLLEVCKSVN---------PQPSIVWA 243 (469)
Q Consensus 192 ----~~~d~Vih~Aa~~~~~~----~~~-----------~~~~~~~~Nv~~~~~ll~aa~~~~---------~~~~~V~~ 243 (469)
-++|+||||||...... ... +...++++|+.++..+++++.... ....+|++
T Consensus 79 ~~~~g~iD~lv~nAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~~~~~~iv~~ 158 (267)
T TIGR02685 79 FRAFGRCDVLVNNASAFYPTPLLRGDAGEGVGDKKSLEVQVAELFGSNAIAPYFLIKAFAQRQAGTRAEQRSTNLSIVNL 158 (267)
T ss_pred HHccCCceEEEECCccCCCCcccccccccccccchhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhcccccCCCCeEEEEe
Confidence 15799999999643211 111 245679999999999988754321 11368888
Q ss_pred cCccccCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeecceecCCCCCCChHHHHHHHHHc
Q 012176 244 SSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQ 320 (469)
Q Consensus 244 SS~~vyg~~~~~~~~E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~ 320 (469)
||.....+. .+...|+.+|.+.|.+++.++.+ +|+++++|+||.+..|...+ ..+......
T Consensus 159 ~s~~~~~~~------------~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~~~~~~~~~----~~~~~~~~~ 222 (267)
T TIGR02685 159 CDAMTDQPL------------LGFTMYTMAKHALEGLTRSAALELAPLQIRVNGVAPGLSLLPDAMP----FEVQEDYRR 222 (267)
T ss_pred hhhhccCCC------------cccchhHHHHHHHHHHHHHHHHHHhhhCeEEEEEecCCccCccccc----hhHHHHHHH
Confidence 875543211 34567999999999999999877 58999999999987663321 112222222
Q ss_pred CCceEEEeeCCCCcceEecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCCcc
Q 012176 321 GKTIDVYKTQDDREVARDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTSPV 376 (469)
Q Consensus 321 g~~~~~~~~~~~~~~~~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~~v 376 (469)
..++ + ......+|++++++.++..... ...|+.+.+.++..+
T Consensus 223 ~~~~--------~---~~~~~~~~va~~~~~l~~~~~~---~~~G~~~~v~gg~~~ 264 (267)
T TIGR02685 223 KVPL--------G---QREASAEQIADVVIFLVSPKAK---YITGTCIKVDGGLSL 264 (267)
T ss_pred hCCC--------C---cCCCCHHHHHHHHHHHhCcccC---CcccceEEECCceec
Confidence 2111 0 1235789999999998865432 235578888776543
|
Pteridine reductase is an enzyme used by trypanosomatids (including Trypanosoma cruzi and Leishmania major) to obtain reduced pteridines by salvage rather than biosynthetic pathways. Enzymes in T. cruzi described as pteridine reductase 1 (PTR1) and pteridine reductase 2 (PTR2) have different activity profiles. PTR1 is more active with with fully oxidized biopterin and folate than with reduced forms, while PTR2 reduces dihydrobiopterin and dihydrofolate but not oxidized pteridines. T. cruzi PTR1 and PTR2 are more similar to each other in sequence than either is to the pteridine reductase of Leishmania major, and all are included in this family. |
| >PRK07791 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=5.3e-17 Score=159.04 Aligned_cols=228 Identities=15% Similarity=0.108 Sum_probs=154.6
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCC-----CCChhHHHHHHHhhc-cCCeEEEEecCCCHHHHHHhh
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNS-----YYDPSLKRARQKLLQ-KHQVFIVEGDLNDAPLLTKLF 189 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~-----~~~~~~~~~~~~~~~-~~~v~~v~~Dl~d~~~l~~~~ 189 (469)
.++++++||||+++||.+++++|+++|++|++++|... ............... ...+.++.+|++|++++++++
T Consensus 4 l~~k~~lITGas~GIG~aia~~la~~G~~vii~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~~ 83 (286)
T PRK07791 4 LDGRVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSASGGSAAQAVVDEIVAAGGEAVANGDDIADWDGAANLV 83 (286)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeeCCccccccccchhHHHHHHHHHHhcCCceEEEeCCCCCHHHHHHHH
Confidence 56789999999999999999999999999999987541 001122222222211 236788999999999988877
Q ss_pred ccC-----CccEEEEcccccCh----hhhccChHHHHHHHHHHHHHHHHHHHh----cC-----CCCeEEEEcCccccCC
Q 012176 190 DVV-----PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCKS----VN-----PQPSIVWASSSSVYGL 251 (469)
Q Consensus 190 ~~~-----~~d~Vih~Aa~~~~----~~~~~~~~~~~~~Nv~~~~~ll~aa~~----~~-----~~~~~V~~SS~~vyg~ 251 (469)
+.+ ++|++|||||.... ....++++..+++|+.++..+++++.. .+ ..++||++||.+.+.+
T Consensus 84 ~~~~~~~g~id~lv~nAG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~g~Iv~isS~~~~~~ 163 (286)
T PRK07791 84 DAAVETFGGLDVLVNNAGILRDRMIANMSEEEWDAVIAVHLKGHFATLRHAAAYWRAESKAGRAVDARIINTSSGAGLQG 163 (286)
T ss_pred HHHHHhcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHHhcccCCCCCcEEEEeCchhhCcC
Confidence 643 67999999997432 123345667899999999998887642 11 1248999999655432
Q ss_pred CCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEe
Q 012176 252 NTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYK 328 (469)
Q Consensus 252 ~~~~~~~E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~ 328 (469)
. .....|+.+|.+.+.+++.++.+ +|++++.|.|| +..+.. ...........+
T Consensus 164 ~------------~~~~~Y~asKaal~~l~~~la~el~~~gIrVn~v~Pg-~~T~~~------~~~~~~~~~~~~----- 219 (286)
T PRK07791 164 S------------VGQGNYSAAKAGIAALTLVAAAELGRYGVTVNAIAPA-ARTRMT------ETVFAEMMAKPE----- 219 (286)
T ss_pred C------------CCchhhHHHHHHHHHHHHHHHHHHHHhCeEEEEECCC-CCCCcc------hhhHHHHHhcCc-----
Confidence 2 23467999999999999998876 48999999998 432211 111111111111
Q ss_pred eCCCCcceEecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCCc
Q 012176 329 TQDDREVARDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTSP 375 (469)
Q Consensus 329 ~~~~~~~~~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~~ 375 (469)
........++|++++++.++..... ...|+++.+.++..
T Consensus 220 -----~~~~~~~~pedva~~~~~L~s~~~~---~itG~~i~vdgG~~ 258 (286)
T PRK07791 220 -----EGEFDAMAPENVSPLVVWLGSAESR---DVTGKVFEVEGGKI 258 (286)
T ss_pred -----ccccCCCCHHHHHHHHHHHhCchhc---CCCCcEEEEcCCce
Confidence 1111345789999999998764322 34558887776653
|
|
| >PRK07533 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=7.5e-17 Score=155.57 Aligned_cols=227 Identities=14% Similarity=0.095 Sum_probs=154.5
Q ss_pred CCCCEEEEEcCC--ChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccC-
Q 012176 116 PNGMTVLVTGAA--GFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV- 192 (469)
Q Consensus 116 ~~~~~VlVtGat--G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~- 192 (469)
.++|+++||||+ +.||.+++++|+++|++|++.+|+... .+.+.+.... . ..+.++.+|++|.++++++++.+
T Consensus 8 ~~~k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~~~-~~~~~~~~~~-~--~~~~~~~~D~~~~~~v~~~~~~~~ 83 (258)
T PRK07533 8 LAGKRGLVVGIANEQSIAWGCARAFRALGAELAVTYLNDKA-RPYVEPLAEE-L--DAPIFLPLDVREPGQLEAVFARIA 83 (258)
T ss_pred cCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCChhh-HHHHHHHHHh-h--ccceEEecCcCCHHHHHHHHHHHH
Confidence 578999999998 599999999999999999999985421 1111221111 1 24567899999999988887653
Q ss_pred ----CccEEEEcccccCh--------hhhccChHHHHHHHHHHHHHHHHHHHhcC-CCCeEEEEcCccccCCCCCCCCCC
Q 012176 193 ----PFTHVLHLAAQAGV--------RYAMQNPQSYVASNIAGFVNLLEVCKSVN-PQPSIVWASSSSVYGLNTQVPFSE 259 (469)
Q Consensus 193 ----~~d~Vih~Aa~~~~--------~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~-~~~~~V~~SS~~vyg~~~~~~~~E 259 (469)
++|++|||||.... ..+.++.+..+++|+.+...+++++...- ...+||++||.+.....
T Consensus 84 ~~~g~ld~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~p~m~~~g~Ii~iss~~~~~~~------- 156 (258)
T PRK07533 84 EEWGRLDFLLHSIAFAPKEDLHGRVVDCSREGFALAMDVSCHSFIRMARLAEPLMTNGGSLLTMSYYGAEKVV------- 156 (258)
T ss_pred HHcCCCCEEEEcCccCCcccccCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHhccCCEEEEEeccccccCC-------
Confidence 57999999996421 12334567889999999999998765431 12489999986542110
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcce
Q 012176 260 SHRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVA 336 (469)
Q Consensus 260 ~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 336 (469)
.....|+.+|.+.+.+++.++.++ |++++.|+||.|-.+-...........+......++
T Consensus 157 -----~~~~~Y~asKaal~~l~~~la~el~~~gI~Vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~p~------------ 219 (258)
T PRK07533 157 -----ENYNLMGPVKAALESSVRYLAAELGPKGIRVHAISPGPLKTRAASGIDDFDALLEDAAERAPL------------ 219 (258)
T ss_pred -----ccchhhHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCcCChhhhccCCcHHHHHHHHhcCCc------------
Confidence 234679999999999999988764 799999999998775321100011222222222111
Q ss_pred EecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCC
Q 012176 337 RDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNT 373 (469)
Q Consensus 337 ~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~ 373 (469)
..+..++|++.+++.++..... ...|+++.+.++
T Consensus 220 ~r~~~p~dva~~~~~L~s~~~~---~itG~~i~vdgg 253 (258)
T PRK07533 220 RRLVDIDDVGAVAAFLASDAAR---RLTGNTLYIDGG 253 (258)
T ss_pred CCCCCHHHHHHHHHHHhChhhc---cccCcEEeeCCc
Confidence 1356789999999998765321 244577777654
|
|
| >KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.77 E-value=8.4e-18 Score=160.35 Aligned_cols=174 Identities=21% Similarity=0.169 Sum_probs=129.8
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccC--
Q 012176 115 RPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV-- 192 (469)
Q Consensus 115 ~~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~-- 192 (469)
+..+|+|+||||+.+||.+++.+|.++|.+++.+.|..+..+.-.++.++..... ++.++++|++|.++++++++..
T Consensus 9 ~~~~kvVvITGASsGIG~~lA~~la~~G~~l~lvar~~rrl~~v~~~l~~~~~~~-~v~~~~~Dvs~~~~~~~~~~~~~~ 87 (282)
T KOG1205|consen 9 RLAGKVVLITGASSGIGEALAYELAKRGAKLVLVARRARRLERVAEELRKLGSLE-KVLVLQLDVSDEESVKKFVEWAIR 87 (282)
T ss_pred HhCCCEEEEeCCCcHHHHHHHHHHHhCCCceEEeehhhhhHHHHHHHHHHhCCcC-ccEEEeCccCCHHHHHHHHHHHHH
Confidence 3688999999999999999999999999999999887664433323322222222 6999999999999999887432
Q ss_pred ---CccEEEEcccccChhhh----ccChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEEcCccccCCCCCCCCCCCC
Q 012176 193 ---PFTHVLHLAAQAGVRYA----MQNPQSYVASNIAGFVNLLEVC----KSVNPQPSIVWASSSSVYGLNTQVPFSESH 261 (469)
Q Consensus 193 ---~~d~Vih~Aa~~~~~~~----~~~~~~~~~~Nv~~~~~ll~aa----~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~ 261 (469)
+.|++|||||....... ..+....+++|+.|+..+..++ ++.+ .+|||.+||++.+-.-
T Consensus 88 ~fg~vDvLVNNAG~~~~~~~~~~~~~~~~~~mdtN~~G~V~~Tk~alp~m~~r~-~GhIVvisSiaG~~~~--------- 157 (282)
T KOG1205|consen 88 HFGRVDVLVNNAGISLVGFLEDTDIEDVRNVMDTNVFGTVYLTKAALPSMKKRN-DGHIVVISSIAGKMPL--------- 157 (282)
T ss_pred hcCCCCEEEecCccccccccccCcHHHHHHHhhhhchhhHHHHHHHHHHhhhcC-CCeEEEEeccccccCC---------
Confidence 67999999998553221 2233468999999988888875 4455 4599999998765322
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHhCCcE--E--EEeecceec
Q 012176 262 RTDQPASLYAATKKAGEEIAHTYNHIYGLAL--T--GLRFFTVYG 302 (469)
Q Consensus 262 ~~~~p~~~Y~~sK~~~E~~~~~~~~~~gi~~--~--ilRp~~v~G 302 (469)
+..+.|++||.+.+.+...++.|..-.. + +|.||.|-.
T Consensus 158 ---P~~~~Y~ASK~Al~~f~etLR~El~~~~~~i~i~V~PG~V~T 199 (282)
T KOG1205|consen 158 ---PFRSIYSASKHALEGFFETLRQELIPLGTIIIILVSPGPIET 199 (282)
T ss_pred ---CcccccchHHHHHHHHHHHHHHHhhccCceEEEEEecCceee
Confidence 2234899999999999999998863222 1 477887654
|
|
| >PRK08703 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=8.8e-17 Score=153.02 Aligned_cols=201 Identities=15% Similarity=0.084 Sum_probs=141.0
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhh--ccCCeEEEEecCCC--HHHHHHhhc-
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLL--QKHQVFIVEGDLND--APLLTKLFD- 190 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~v~~v~~Dl~d--~~~l~~~~~- 190 (469)
.++++|+||||+|+||.++++.|+++|++|++++|+... ......... ....+..+.+|+.| .+++.++++
T Consensus 4 l~~k~vlItG~sggiG~~la~~l~~~g~~V~~~~r~~~~----~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 79 (239)
T PRK08703 4 LSDKTILVTGASQGLGEQVAKAYAAAGATVILVARHQKK----LEKVYDAIVEAGHPEPFAIRFDLMSAEEKEFEQFAAT 79 (239)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCChHH----HHHHHHHHHHcCCCCcceEEeeecccchHHHHHHHHH
Confidence 567899999999999999999999999999999996532 122222211 12356788899975 344544432
Q ss_pred ---c--CCccEEEEcccccCh-----hhhccChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEEcCccccCCCCCCC
Q 012176 191 ---V--VPFTHVLHLAAQAGV-----RYAMQNPQSYVASNIAGFVNLLEVCKS----VNPQPSIVWASSSSVYGLNTQVP 256 (469)
Q Consensus 191 ---~--~~~d~Vih~Aa~~~~-----~~~~~~~~~~~~~Nv~~~~~ll~aa~~----~~~~~~~V~~SS~~vyg~~~~~~ 256 (469)
. -++|+||||||.... ....++.+..+++|+.++.++++++.. .+. +++|++||.....+.
T Consensus 80 i~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~-~~iv~~ss~~~~~~~---- 154 (239)
T PRK08703 80 IAEATQGKLDGIVHCAGYFYALSPLDFQTVAEWVNQYRINTVAPMGLTRALFPLLKQSPD-ASVIFVGESHGETPK---- 154 (239)
T ss_pred HHHHhCCCCCEEEEeccccccCCCccccCHHHHHHHHHHhhhHHHHHHHHHHHHHHhCCC-CEEEEEeccccccCC----
Confidence 1 157999999996422 122344556889999999999887744 233 489999985432111
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHHHHHHHHh----CCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCC
Q 012176 257 FSESHRTDQPASLYAATKKAGEEIAHTYNHIY----GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDD 332 (469)
Q Consensus 257 ~~E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~----gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 332 (469)
.....|+.+|++.+.+++.++.++ ++++++|+||.|++|...... .
T Consensus 155 --------~~~~~Y~~sKaa~~~~~~~la~e~~~~~~i~v~~v~pG~v~t~~~~~~~----------~------------ 204 (239)
T PRK08703 155 --------AYWGGFGASKAALNYLCKVAADEWERFGNLRANVLVPGPINSPQRIKSH----------P------------ 204 (239)
T ss_pred --------CCccchHHhHHHHHHHHHHHHHHhccCCCeEEEEEecCcccCccccccC----------C------------
Confidence 234679999999999999998875 599999999999998432110 0
Q ss_pred CcceEecccHHHHHHHHHHHhcc
Q 012176 333 REVARDFTYIDDVVKGCVGATGS 355 (469)
Q Consensus 333 ~~~~~~~v~v~Dva~~~~~~~~~ 355 (469)
+.....+...+|++.+++.++..
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~ 227 (239)
T PRK08703 205 GEAKSERKSYGDVLPAFVWWASA 227 (239)
T ss_pred CCCccccCCHHHHHHHHHHHhCc
Confidence 11112345789999999998864
|
|
| >PRK07984 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1e-16 Score=155.04 Aligned_cols=227 Identities=14% Similarity=0.087 Sum_probs=152.5
Q ss_pred CCCCEEEEEcCCC--hhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhh-ccCCeEEEEecCCCHHHHHHhhccC
Q 012176 116 PNGMTVLVTGAAG--FVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLL-QKHQVFIVEGDLNDAPLLTKLFDVV 192 (469)
Q Consensus 116 ~~~~~VlVtGatG--~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~v~~v~~Dl~d~~~l~~~~~~~ 192 (469)
.++|+++||||++ .||++++++|+++|++|++.+|+.. ......... ....+..+.+|++|+++++++++..
T Consensus 4 l~~k~~lITGas~~~GIG~aia~~la~~G~~vil~~r~~~-----~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~ 78 (262)
T PRK07984 4 LSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDK-----LKGRVEEFAAQLGSDIVLPCDVAEDASIDAMFAEL 78 (262)
T ss_pred cCCCEEEEeCCCCCccHHHHHHHHHHHCCCEEEEEecchh-----HHHHHHHHHhccCCceEeecCCCCHHHHHHHHHHH
Confidence 5678999999985 9999999999999999999887421 111111111 1235678899999999999888653
Q ss_pred -----CccEEEEcccccCh---------hhhccChHHHHHHHHHHHHHHHHHHHhcC-CCCeEEEEcCccccCCCCCCCC
Q 012176 193 -----PFTHVLHLAAQAGV---------RYAMQNPQSYVASNIAGFVNLLEVCKSVN-PQPSIVWASSSSVYGLNTQVPF 257 (469)
Q Consensus 193 -----~~d~Vih~Aa~~~~---------~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~-~~~~~V~~SS~~vyg~~~~~~~ 257 (469)
++|++|||||.... ....++.+..+++|+.+...+.+++...- ...+||++||.+...+.
T Consensus 79 ~~~~g~iD~linnAg~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~Iv~iss~~~~~~~----- 153 (262)
T PRK07984 79 GKVWPKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNPGSALLTLSYLGAERAI----- 153 (262)
T ss_pred HhhcCCCCEEEECCccCCccccCCcchhhcCHHHHHHHhhhhhHHHHHHHHHHHHHhcCCcEEEEEecCCCCCCC-----
Confidence 57999999996421 11233445678999999888888764321 12489999986543111
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCc
Q 012176 258 SESHRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDRE 334 (469)
Q Consensus 258 ~E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 334 (469)
.....|+.+|.+.+.+++.++.++ ||+++.|.||.|..+..............+....++
T Consensus 154 -------~~~~~Y~asKaal~~l~~~la~el~~~gIrVn~i~PG~v~T~~~~~~~~~~~~~~~~~~~~p~---------- 216 (262)
T PRK07984 154 -------PNYNVMGLAKASLEANVRYMANAMGPEGVRVNAISAGPIRTLAASGIKDFRKMLAHCEAVTPI---------- 216 (262)
T ss_pred -------CCcchhHHHHHHHHHHHHHHHHHhcccCcEEeeeecCcccchHHhcCCchHHHHHHHHHcCCC----------
Confidence 234579999999999999998764 799999999998764211000011111212111111
Q ss_pred ceEecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCC
Q 012176 335 VARDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTS 374 (469)
Q Consensus 335 ~~~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~ 374 (469)
..+..++|++.+++.++..... ...|+++.+.++.
T Consensus 217 --~r~~~pedva~~~~~L~s~~~~---~itG~~i~vdgg~ 251 (262)
T PRK07984 217 --RRTVTIEDVGNSAAFLCSDLSA---GISGEVVHVDGGF 251 (262)
T ss_pred --cCCCCHHHHHHHHHHHcCcccc---cccCcEEEECCCc
Confidence 2356789999999998865432 2345777776653
|
|
| >PRK06603 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=5.7e-17 Score=156.57 Aligned_cols=227 Identities=15% Similarity=0.083 Sum_probs=153.1
Q ss_pred CCCCEEEEEcCCC--hhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcc-CCeEEEEecCCCHHHHHHhhccC
Q 012176 116 PNGMTVLVTGAAG--FVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQK-HQVFIVEGDLNDAPLLTKLFDVV 192 (469)
Q Consensus 116 ~~~~~VlVtGatG--~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~-~~v~~v~~Dl~d~~~l~~~~~~~ 192 (469)
.++|+++||||++ .||.+++++|+++|++|++.+|+.. ..+.. ...... ....++.+|++|+++++++++..
T Consensus 6 ~~~k~~lITGas~~~GIG~a~a~~la~~G~~v~~~~r~~~-~~~~~----~~l~~~~g~~~~~~~Dv~~~~~v~~~~~~~ 80 (260)
T PRK06603 6 LQGKKGLITGIANNMSISWAIAQLAKKHGAELWFTYQSEV-LEKRV----KPLAEEIGCNFVSELDVTNPKSISNLFDDI 80 (260)
T ss_pred cCCcEEEEECCCCCcchHHHHHHHHHHcCCEEEEEeCchH-HHHHH----HHHHHhcCCceEEEccCCCHHHHHHHHHHH
Confidence 5678999999997 8999999999999999999887421 11111 111111 22346789999999988888643
Q ss_pred -----CccEEEEcccccCh--------hhhccChHHHHHHHHHHHHHHHHHHHhc-CCCCeEEEEcCccccCCCCCCCCC
Q 012176 193 -----PFTHVLHLAAQAGV--------RYAMQNPQSYVASNIAGFVNLLEVCKSV-NPQPSIVWASSSSVYGLNTQVPFS 258 (469)
Q Consensus 193 -----~~d~Vih~Aa~~~~--------~~~~~~~~~~~~~Nv~~~~~ll~aa~~~-~~~~~~V~~SS~~vyg~~~~~~~~ 258 (469)
++|++|||||.... +...++.+..+++|+.+...+++++... ...++||++||.+.....
T Consensus 81 ~~~~g~iDilVnnag~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~m~~~G~Iv~isS~~~~~~~------ 154 (260)
T PRK06603 81 KEKWGSFDFLLHGMAFADKNELKGRYVDTSLENFHNSLHISCYSLLELSRSAEALMHDGGSIVTLTYYGAEKVI------ 154 (260)
T ss_pred HHHcCCccEEEEccccCCcccccCccccCCHHHHHHHHHHHHHHHHHHHHHHHhhhccCceEEEEecCccccCC------
Confidence 58999999986421 1233455678999999999998876432 122489999996543211
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcc
Q 012176 259 ESHRTDQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREV 335 (469)
Q Consensus 259 E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 335 (469)
.....|+.+|.+.+.+++.++.+ +|++++.|.||.|-.+..............+....|+
T Consensus 155 ------~~~~~Y~asKaal~~l~~~la~el~~~gIrVn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~p~----------- 217 (260)
T PRK06603 155 ------PNYNVMGVAKAALEASVKYLANDMGENNIRVNAISAGPIKTLASSAIGDFSTMLKSHAATAPL----------- 217 (260)
T ss_pred ------CcccchhhHHHHHHHHHHHHHHHhhhcCeEEEEEecCcCcchhhhcCCCcHHHHHHHHhcCCc-----------
Confidence 23467999999999999999876 4799999999999765321100001122222222111
Q ss_pred eEecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCC
Q 012176 336 ARDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTS 374 (469)
Q Consensus 336 ~~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~ 374 (469)
..+...+|+|++++.++..... ...|+++.+.++.
T Consensus 218 -~r~~~pedva~~~~~L~s~~~~---~itG~~i~vdgG~ 252 (260)
T PRK06603 218 -KRNTTQEDVGGAAVYLFSELSK---GVTGEIHYVDCGY 252 (260)
T ss_pred -CCCCCHHHHHHHHHHHhCcccc---cCcceEEEeCCcc
Confidence 1246689999999999865432 2345777776653
|
|
| >PRK06484 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.76 E-value=4.1e-17 Score=173.15 Aligned_cols=226 Identities=14% Similarity=0.095 Sum_probs=160.8
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccC---
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~--- 192 (469)
..+|++|||||+|+||.+++++|+++|++|++++|+.+ ........ . ...+..+.+|++|+++++++++..
T Consensus 267 ~~~k~~lItGas~gIG~~~a~~l~~~G~~V~~~~r~~~----~~~~~~~~-~-~~~~~~~~~D~~~~~~~~~~~~~~~~~ 340 (520)
T PRK06484 267 ESPRVVAITGGARGIGRAVADRFAAAGDRLLIIDRDAE----GAKKLAEA-L-GDEHLSVQADITDEAAVESAFAQIQAR 340 (520)
T ss_pred cCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHH----HHHHHHHH-h-CCceeEEEccCCCHHHHHHHHHHHHHH
Confidence 46899999999999999999999999999999998542 11111111 1 235778899999999998888753
Q ss_pred --CccEEEEcccccCh-----hhhccChHHHHHHHHHHHHHHHHHHHhcC-CCCeEEEEcCccccCCCCCCCCCCCCCCC
Q 012176 193 --PFTHVLHLAAQAGV-----RYAMQNPQSYVASNIAGFVNLLEVCKSVN-PQPSIVWASSSSVYGLNTQVPFSESHRTD 264 (469)
Q Consensus 193 --~~d~Vih~Aa~~~~-----~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~-~~~~~V~~SS~~vyg~~~~~~~~E~~~~~ 264 (469)
++|+||||||.... ...+++.+.++++|+.++..+++++...- ..++||++||.+.+.+.
T Consensus 341 ~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~------------ 408 (520)
T PRK06484 341 WGRLDVLVNNAGIAEVFKPSLEQSAEDFTRVYDVNLSGAFACARAAARLMSQGGVIVNLGSIASLLAL------------ 408 (520)
T ss_pred cCCCCEEEECCCCcCCCCChhhCCHHHHHHHHHhCcHHHHHHHHHHHHHhccCCEEEEECchhhcCCC------------
Confidence 57999999997421 22344566789999999999999876542 22489999997665322
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCCCCC-hHHHHHHHHHcCCceEEEeeCCCCcceEecc
Q 012176 265 QPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDM-AYFFFTKDILQGKTIDVYKTQDDREVARDFT 340 (469)
Q Consensus 265 ~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v 340 (469)
.+...|+.+|.+.+.+++.++.++ |+++++|+||.|.++...... .-......+.+..++ ..+.
T Consensus 409 ~~~~~Y~asKaal~~l~~~la~e~~~~gI~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~------------~~~~ 476 (520)
T PRK06484 409 PPRNAYCASKAAVTMLSRSLACEWAPAGIRVNTVAPGYIETPAVLALKASGRADFDSIRRRIPL------------GRLG 476 (520)
T ss_pred CCCchhHHHHHHHHHHHHHHHHHhhhhCeEEEEEEeCCccCchhhhhccccHHHHHHHHhcCCC------------CCCc
Confidence 345689999999999999998764 799999999999887432100 000111222222221 1246
Q ss_pred cHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCC
Q 012176 341 YIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTS 374 (469)
Q Consensus 341 ~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~ 374 (469)
.++|+|++++.++..... ...|+++.+.++.
T Consensus 477 ~~~dia~~~~~l~s~~~~---~~~G~~i~vdgg~ 507 (520)
T PRK06484 477 DPEEVAEAIAFLASPAAS---YVNGATLTVDGGW 507 (520)
T ss_pred CHHHHHHHHHHHhCcccc---CccCcEEEECCCc
Confidence 789999999998865422 3456888887763
|
|
| >PRK06997 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=9.2e-17 Score=155.13 Aligned_cols=229 Identities=10% Similarity=0.018 Sum_probs=153.9
Q ss_pred CCCCEEEEEcC--CChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccC-
Q 012176 116 PNGMTVLVTGA--AGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV- 192 (469)
Q Consensus 116 ~~~~~VlVtGa--tG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~- 192 (469)
.++++++|||| ++.||.+++++|+++|++|++.+|... ..+.+...... ......+.+|++|+++++++++..
T Consensus 4 l~~k~vlItGas~~~GIG~a~a~~l~~~G~~v~~~~~~~~-~~~~~~~~~~~---~~~~~~~~~Dv~d~~~v~~~~~~~~ 79 (260)
T PRK06997 4 LAGKRILITGLLSNRSIAYGIAKACKREGAELAFTYVGDR-FKDRITEFAAE---FGSDLVFPCDVASDEQIDALFASLG 79 (260)
T ss_pred cCCcEEEEeCCCCCCcHHHHHHHHHHHCCCeEEEEccchH-HHHHHHHHHHh---cCCcceeeccCCCHHHHHHHHHHHH
Confidence 56789999996 679999999999999999999876321 11111111111 123356889999999999888653
Q ss_pred ----CccEEEEcccccCh---------hhhccChHHHHHHHHHHHHHHHHHHHhc-CCCCeEEEEcCccccCCCCCCCCC
Q 012176 193 ----PFTHVLHLAAQAGV---------RYAMQNPQSYVASNIAGFVNLLEVCKSV-NPQPSIVWASSSSVYGLNTQVPFS 258 (469)
Q Consensus 193 ----~~d~Vih~Aa~~~~---------~~~~~~~~~~~~~Nv~~~~~ll~aa~~~-~~~~~~V~~SS~~vyg~~~~~~~~ 258 (469)
++|++|||||.... ....++.+..+++|+.+...+++++... ...++||++||.+..-+.
T Consensus 80 ~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~~~~~iN~~~~~~l~~~~lp~m~~~g~Ii~iss~~~~~~~------ 153 (260)
T PRK06997 80 QHWDGLDGLVHSIGFAPREAIAGDFLDGLSRENFRIAHDISAYSFPALAKAALPMLSDDASLLTLSYLGAERVV------ 153 (260)
T ss_pred HHhCCCcEEEEccccCCccccccccchhcCHHHHHHHHHhhhHHHHHHHHHHHHhcCCCceEEEEeccccccCC------
Confidence 58999999997432 1223455678999999999998886543 222489999986543111
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcc
Q 012176 259 ESHRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREV 335 (469)
Q Consensus 259 E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 335 (469)
.....|+.+|.+.+.+.+.++.++ |++++.|.||.|-.+............+.+....|+
T Consensus 154 ------~~~~~Y~asKaal~~l~~~la~el~~~gIrVn~i~PG~v~T~~~~~~~~~~~~~~~~~~~~p~----------- 216 (260)
T PRK06997 154 ------PNYNTMGLAKASLEASVRYLAVSLGPKGIRANGISAGPIKTLAASGIKDFGKILDFVESNAPL----------- 216 (260)
T ss_pred ------CCcchHHHHHHHHHHHHHHHHHHhcccCeEEEEEeeCccccchhccccchhhHHHHHHhcCcc-----------
Confidence 234569999999999999998764 799999999998765221100001111112111111
Q ss_pred eEecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCCc
Q 012176 336 ARDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTSP 375 (469)
Q Consensus 336 ~~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~~ 375 (469)
..+..++|++++++.++..... ...|+++.+.++..
T Consensus 217 -~r~~~pedva~~~~~l~s~~~~---~itG~~i~vdgg~~ 252 (260)
T PRK06997 217 -RRNVTIEEVGNVAAFLLSDLAS---GVTGEITHVDSGFN 252 (260)
T ss_pred -cccCCHHHHHHHHHHHhCcccc---CcceeEEEEcCChh
Confidence 1256789999999999875422 34558888776643
|
|
| >PRK09072 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=9.1e-17 Score=155.23 Aligned_cols=205 Identities=16% Similarity=0.077 Sum_probs=146.5
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccC---
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~--- 192 (469)
.++++|+||||+|+||.++++.|+++|++|++++|+... ............++.++.+|++|.+.++++++..
T Consensus 3 ~~~~~vlItG~s~~iG~~ia~~l~~~G~~V~~~~r~~~~----~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~ 78 (263)
T PRK09072 3 LKDKRVLLTGASGGIGQALAEALAAAGARLLLVGRNAEK----LEALAARLPYPGRHRWVVADLTSEAGREAVLARAREM 78 (263)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEECCHHH----HHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHhc
Confidence 356899999999999999999999999999999995431 1222222212347889999999999988887643
Q ss_pred -CccEEEEcccccChh----hhccChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEEcCccccCCCCCCCCCCCCCC
Q 012176 193 -PFTHVLHLAAQAGVR----YAMQNPQSYVASNIAGFVNLLEVCKS----VNPQPSIVWASSSSVYGLNTQVPFSESHRT 263 (469)
Q Consensus 193 -~~d~Vih~Aa~~~~~----~~~~~~~~~~~~Nv~~~~~ll~aa~~----~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~ 263 (469)
++|+|||+||..... ...++.+..+++|+.++.++++++.. .+. +++|++||...+.+.
T Consensus 79 ~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~-~~iv~isS~~~~~~~----------- 146 (263)
T PRK09072 79 GGINVLINNAGVNHFALLEDQDPEAIERLLALNLTAPMQLTRALLPLLRAQPS-AMVVNVGSTFGSIGY----------- 146 (263)
T ss_pred CCCCEEEECCCCCCccccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCC-CEEEEecChhhCcCC-----------
Confidence 579999999874321 12334467889999999999988754 232 389999886443221
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceEecc
Q 012176 264 DQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFT 340 (469)
Q Consensus 264 ~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v 340 (469)
.....|+.+|.+.+.+++.++.++ +++++++.||.+.++.... .. . .. . ........
T Consensus 147 -~~~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~Pg~~~t~~~~~------~~-----~-~~--~-----~~~~~~~~ 206 (263)
T PRK09072 147 -PGYASYCASKFALRGFSEALRRELADTGVRVLYLAPRATRTAMNSE------AV-----Q-AL--N-----RALGNAMD 206 (263)
T ss_pred -CCccHHHHHHHHHHHHHHHHHHHhcccCcEEEEEecCcccccchhh------hc-----c-cc--c-----ccccCCCC
Confidence 234679999999999998888664 7999999999887653211 00 0 00 0 00011356
Q ss_pred cHHHHHHHHHHHhccC
Q 012176 341 YIDDVVKGCVGATGSG 356 (469)
Q Consensus 341 ~v~Dva~~~~~~~~~~ 356 (469)
.++|+|++++.++++.
T Consensus 207 ~~~~va~~i~~~~~~~ 222 (263)
T PRK09072 207 DPEDVAAAVLQAIEKE 222 (263)
T ss_pred CHHHHHHHHHHHHhCC
Confidence 7899999999999875
|
|
| >PRK08159 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.3e-16 Score=155.22 Aligned_cols=228 Identities=10% Similarity=0.022 Sum_probs=154.5
Q ss_pred CCCCEEEEEcCC--ChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccC-
Q 012176 116 PNGMTVLVTGAA--GFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV- 192 (469)
Q Consensus 116 ~~~~~VlVtGat--G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~- 192 (469)
.++|+++||||+ +.||.++++.|+++|++|++..|... ..+.+...... ......+.+|++|+++++++++..
T Consensus 8 ~~~k~~lItGas~~~GIG~aia~~la~~G~~V~l~~r~~~-~~~~~~~l~~~---~~~~~~~~~Dl~~~~~v~~~~~~~~ 83 (272)
T PRK08159 8 MAGKRGLILGVANNRSIAWGIAKACRAAGAELAFTYQGDA-LKKRVEPLAAE---LGAFVAGHCDVTDEASIDAVFETLE 83 (272)
T ss_pred ccCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCchH-HHHHHHHHHHh---cCCceEEecCCCCHHHHHHHHHHHH
Confidence 467899999997 89999999999999999998877421 11111111111 123567899999999998887653
Q ss_pred ----CccEEEEcccccCh--------hhhccChHHHHHHHHHHHHHHHHHHHhcC-CCCeEEEEcCccccCCCCCCCCCC
Q 012176 193 ----PFTHVLHLAAQAGV--------RYAMQNPQSYVASNIAGFVNLLEVCKSVN-PQPSIVWASSSSVYGLNTQVPFSE 259 (469)
Q Consensus 193 ----~~d~Vih~Aa~~~~--------~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~-~~~~~V~~SS~~vyg~~~~~~~~E 259 (469)
++|++|||||.... ....++.+..+++|+.++..+++++...- ..+++|++||.+...+.
T Consensus 84 ~~~g~iD~lv~nAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~g~Iv~iss~~~~~~~------- 156 (272)
T PRK08159 84 KKWGKLDFVVHAIGFSDKDELTGRYVDTSRDNFTMTMDISVYSFTAVAQRAEKLMTDGGSILTLTYYGAEKVM------- 156 (272)
T ss_pred HhcCCCcEEEECCcccCccccccCcccCCHHHHHHHHhHHHHHHHHHHHHHHHhcCCCceEEEEeccccccCC-------
Confidence 57999999997431 12234566789999999999998876432 22489999986543211
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcce
Q 012176 260 SHRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVA 336 (469)
Q Consensus 260 ~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 336 (469)
.....|+.+|.+.+.+++.++.++ |+++++|.||.|..+........... ...... ..++
T Consensus 157 -----p~~~~Y~asKaal~~l~~~la~el~~~gIrVn~v~PG~v~T~~~~~~~~~~~~-~~~~~~-~~p~---------- 219 (272)
T PRK08159 157 -----PHYNVMGVAKAALEASVKYLAVDLGPKNIRVNAISAGPIKTLAASGIGDFRYI-LKWNEY-NAPL---------- 219 (272)
T ss_pred -----CcchhhhhHHHHHHHHHHHHHHHhcccCeEEEEeecCCcCCHHHhcCCcchHH-HHHHHh-CCcc----------
Confidence 234679999999999999998764 79999999999876421110000001 111110 1111
Q ss_pred EecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCC
Q 012176 337 RDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTS 374 (469)
Q Consensus 337 ~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~ 374 (469)
..+...+|+|++++.++..... ...|.++.+.++.
T Consensus 220 ~r~~~peevA~~~~~L~s~~~~---~itG~~i~vdgG~ 254 (272)
T PRK08159 220 RRTVTIEEVGDSALYLLSDLSR---GVTGEVHHVDSGY 254 (272)
T ss_pred cccCCHHHHHHHHHHHhCcccc---CccceEEEECCCc
Confidence 1246789999999998865432 3456888888774
|
|
| >PRK08415 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=5.9e-17 Score=157.67 Aligned_cols=228 Identities=11% Similarity=0.011 Sum_probs=152.7
Q ss_pred CCCCEEEEEcCC--ChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccC-
Q 012176 116 PNGMTVLVTGAA--GFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV- 192 (469)
Q Consensus 116 ~~~~~VlVtGat--G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~- 192 (469)
.++|+|+||||+ +.||+.+++.|+++|++|++.+|+.. ........... .. .. ..+.+|++|.++++++++.+
T Consensus 3 l~~k~~lItGas~~~GIG~aiA~~la~~G~~Vil~~r~~~-~~~~~~~~~~~-~~-~~-~~~~~Dv~d~~~v~~~~~~i~ 78 (274)
T PRK08415 3 MKGKKGLIVGVANNKSIAYGIAKACFEQGAELAFTYLNEA-LKKRVEPIAQE-LG-SD-YVYELDVSKPEHFKSLAESLK 78 (274)
T ss_pred cCCcEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEecCHH-HHHHHHHHHHh-cC-Cc-eEEEecCCCHHHHHHHHHHHH
Confidence 467899999997 79999999999999999999988531 01111111111 11 12 57899999999988887653
Q ss_pred ----CccEEEEcccccCh--------hhhccChHHHHHHHHHHHHHHHHHHHhc-CCCCeEEEEcCccccCCCCCCCCCC
Q 012176 193 ----PFTHVLHLAAQAGV--------RYAMQNPQSYVASNIAGFVNLLEVCKSV-NPQPSIVWASSSSVYGLNTQVPFSE 259 (469)
Q Consensus 193 ----~~d~Vih~Aa~~~~--------~~~~~~~~~~~~~Nv~~~~~ll~aa~~~-~~~~~~V~~SS~~vyg~~~~~~~~E 259 (469)
++|++|||||.... ....++.+..+++|+.++..+.+++... ...++||++||.+...+.
T Consensus 79 ~~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~m~~~g~Iv~isS~~~~~~~------- 151 (274)
T PRK08415 79 KDLGKIDFIVHSVAFAPKEALEGSFLETSKEAFNIAMEISVYSLIELTRALLPLLNDGASVLTLSYLGGVKYV------- 151 (274)
T ss_pred HHcCCCCEEEECCccCcccccccccccCCHHHHHHHhhhhhHHHHHHHHHHHHHhccCCcEEEEecCCCccCC-------
Confidence 58999999996421 1233455678999999999998876542 122489999986533211
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcce
Q 012176 260 SHRTDQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVA 336 (469)
Q Consensus 260 ~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 336 (469)
.....|+.+|.+.+.+++.++.+ +|++++.|.||.|..+.................. .+ .
T Consensus 152 -----~~~~~Y~asKaal~~l~~~la~el~~~gIrVn~v~PG~v~T~~~~~~~~~~~~~~~~~~~--~p----------l 214 (274)
T PRK08415 152 -----PHYNVMGVAKAALESSVRYLAVDLGKKGIRVNAISAGPIKTLAASGIGDFRMILKWNEIN--AP----------L 214 (274)
T ss_pred -----CcchhhhhHHHHHHHHHHHHHHHhhhcCeEEEEEecCccccHHHhccchhhHHhhhhhhh--Cc----------h
Confidence 23467999999999999999876 4799999999999775321100000000000001 11 1
Q ss_pred EecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCC
Q 012176 337 RDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTS 374 (469)
Q Consensus 337 ~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~ 374 (469)
..+..++|+|++++.++..... ...|+++.+.++.
T Consensus 215 ~r~~~pedva~~v~fL~s~~~~---~itG~~i~vdGG~ 249 (274)
T PRK08415 215 KKNVSIEEVGNSGMYLLSDLSS---GVTGEIHYVDAGY 249 (274)
T ss_pred hccCCHHHHHHHHHHHhhhhhh---cccccEEEEcCcc
Confidence 1246789999999988765321 2345777777664
|
|
| >PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=9.9e-17 Score=152.36 Aligned_cols=220 Identities=15% Similarity=0.123 Sum_probs=152.0
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccC---
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~--- 192 (469)
.++++|+||||+|+||.++++.|+++|++|++++|+.+ .............+++++.+|++|.+.++++++..
T Consensus 3 ~~~~~vlItGa~g~iG~~~a~~l~~~G~~V~~~~r~~~----~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 78 (238)
T PRK05786 3 LKGKKVAIIGVSEGLGYAVAYFALKEGAQVCINSRNEN----KLKRMKKTLSKYGNIHYVVGDVSSTESARNVIEKAAKV 78 (238)
T ss_pred cCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHH----HHHHHHHHHHhcCCeEEEECCCCCHHHHHHHHHHHHHH
Confidence 45689999999999999999999999999999999543 12221122222336889999999999988877653
Q ss_pred --CccEEEEcccccCh--hhhccChHHHHHHHHHHHHHHHHHHHhc-CCCCeEEEEcCccc-cCCCCCCCCCCCCCCCCC
Q 012176 193 --PFTHVLHLAAQAGV--RYAMQNPQSYVASNIAGFVNLLEVCKSV-NPQPSIVWASSSSV-YGLNTQVPFSESHRTDQP 266 (469)
Q Consensus 193 --~~d~Vih~Aa~~~~--~~~~~~~~~~~~~Nv~~~~~ll~aa~~~-~~~~~~V~~SS~~v-yg~~~~~~~~E~~~~~~p 266 (469)
++|++||+++.... ....++.+..++.|+.+...+++.+... ....+||++||... ++.. .+
T Consensus 79 ~~~id~ii~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ss~~~~~~~~------------~~ 146 (238)
T PRK05786 79 LNAIDGLVVTVGGYVEDTVEEFSGLEEMLTNHIKIPLYAVNASLRFLKEGSSIVLVSSMSGIYKAS------------PD 146 (238)
T ss_pred hCCCCEEEEcCCCcCCCchHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCEEEEEecchhcccCC------------CC
Confidence 36999999986321 1112344567899999988888876543 11137999998654 2211 23
Q ss_pred CChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceEecccHH
Q 012176 267 ASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYID 343 (469)
Q Consensus 267 ~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~ 343 (469)
...|+.+|.+.+.+++.++.++ |++++++|||+|+++.... .. .. . . . ......+..+
T Consensus 147 ~~~Y~~sK~~~~~~~~~~~~~~~~~gi~v~~i~pg~v~~~~~~~-~~----~~----~--~--~------~~~~~~~~~~ 207 (238)
T PRK05786 147 QLSYAVAKAGLAKAVEILASELLGRGIRVNGIAPTTISGDFEPE-RN----WK----K--L--R------KLGDDMAPPE 207 (238)
T ss_pred chHHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCccCCCCCch-hh----hh----h--h--c------cccCCCCCHH
Confidence 4679999999999998888764 8999999999999974221 00 00 0 0 0 0001256779
Q ss_pred HHHHHHHHHhccCCCCCCCCCceEEEeCCC
Q 012176 344 DVVKGCVGATGSGGKKRGPAQLRVYNLGNT 373 (469)
Q Consensus 344 Dva~~~~~~~~~~~~~~~~~~~~iyni~~~ 373 (469)
|++++++.++..+.. ...|+.+.+.++
T Consensus 208 ~va~~~~~~~~~~~~---~~~g~~~~~~~~ 234 (238)
T PRK05786 208 DFAKVIIWLLTDEAD---WVDGVVIPVDGG 234 (238)
T ss_pred HHHHHHHHHhccccc---CccCCEEEECCc
Confidence 999999999865432 234567666543
|
|
| >PRK07370 enoyl-(acyl carrier protein) reductase; Validated | Back alignment and domain information |
|---|
Probab=99.76 E-value=9.1e-17 Score=154.99 Aligned_cols=230 Identities=11% Similarity=0.016 Sum_probs=154.5
Q ss_pred CCCCEEEEEcCC--ChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhc-cCCeEEEEecCCCHHHHHHhhccC
Q 012176 116 PNGMTVLVTGAA--GFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQ-KHQVFIVEGDLNDAPLLTKLFDVV 192 (469)
Q Consensus 116 ~~~~~VlVtGat--G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~v~~v~~Dl~d~~~l~~~~~~~ 192 (469)
.++|+++||||+ +.||.+++++|+++|++|++..|..+.. ..........+ ...+.++.+|++|+++++++++.+
T Consensus 4 l~~k~~lItGas~~~GIG~aia~~la~~G~~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~ 81 (258)
T PRK07370 4 LTGKKALVTGIANNRSIAWGIAQQLHAAGAELGITYLPDEKG--RFEKKVRELTEPLNPSLFLPCDVQDDAQIEETFETI 81 (258)
T ss_pred cCCcEEEEeCCCCCCchHHHHHHHHHHCCCEEEEEecCcccc--hHHHHHHHHHhccCcceEeecCcCCHHHHHHHHHHH
Confidence 467899999986 7999999999999999998887643211 11111111111 124678899999999998888654
Q ss_pred -----CccEEEEcccccCh--------hhhccChHHHHHHHHHHHHHHHHHHHhcC-CCCeEEEEcCccccCCCCCCCCC
Q 012176 193 -----PFTHVLHLAAQAGV--------RYAMQNPQSYVASNIAGFVNLLEVCKSVN-PQPSIVWASSSSVYGLNTQVPFS 258 (469)
Q Consensus 193 -----~~d~Vih~Aa~~~~--------~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~-~~~~~V~~SS~~vyg~~~~~~~~ 258 (469)
++|++|||||.... ....++.+..+++|+.++..+++++...- ..++||++||.....+.
T Consensus 82 ~~~~g~iD~lv~nag~~~~~~~~~~~~~~~~~~~~~~~~iN~~~~~~l~~~~~~~m~~~g~Iv~isS~~~~~~~------ 155 (258)
T PRK07370 82 KQKWGKLDILVHCLAFAGKEELIGDFSATSREGFARALEISAYSLAPLCKAAKPLMSEGGSIVTLTYLGGVRAI------ 155 (258)
T ss_pred HHHcCCCCEEEEcccccCcccccCcchhhCHHHHHHHheeeeHHHHHHHHHHHHHHhhCCeEEEEeccccccCC------
Confidence 68999999996421 12234556789999999999988765321 12489999996543211
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcc
Q 012176 259 ESHRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREV 335 (469)
Q Consensus 259 E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 335 (469)
.....|+.+|.+.+.+++.++.++ |++++.|.||.|-.+........+.....+....+
T Consensus 156 ------~~~~~Y~asKaal~~l~~~la~el~~~gI~Vn~i~PG~v~T~~~~~~~~~~~~~~~~~~~~p------------ 217 (258)
T PRK07370 156 ------PNYNVMGVAKAALEASVRYLAAELGPKNIRVNAISAGPIRTLASSAVGGILDMIHHVEEKAP------------ 217 (258)
T ss_pred ------cccchhhHHHHHHHHHHHHHHHHhCcCCeEEEEEecCcccCchhhccccchhhhhhhhhcCC------------
Confidence 234679999999999999998775 79999999999977632110000111111111111
Q ss_pred eEecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCC
Q 012176 336 ARDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTS 374 (469)
Q Consensus 336 ~~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~ 374 (469)
...+...+|++.++..++..... ...|+++.+.++.
T Consensus 218 ~~r~~~~~dva~~~~fl~s~~~~---~~tG~~i~vdgg~ 253 (258)
T PRK07370 218 LRRTVTQTEVGNTAAFLLSDLAS---GITGQTIYVDAGY 253 (258)
T ss_pred cCcCCCHHHHHHHHHHHhChhhc---cccCcEEEECCcc
Confidence 12356679999999998865422 2345777776553
|
|
| >PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=6.8e-17 Score=154.56 Aligned_cols=213 Identities=18% Similarity=0.162 Sum_probs=146.4
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhh--ccCCeEEEEecCC--CHHHHHHhhc
Q 012176 115 RPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLL--QKHQVFIVEGDLN--DAPLLTKLFD 190 (469)
Q Consensus 115 ~~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~v~~v~~Dl~--d~~~l~~~~~ 190 (469)
..++++|+||||+|+||.+++++|++.|++|++++|+.... ........ ...++.++.+|++ +.+++.++++
T Consensus 9 ~~~~k~vlItG~~g~iG~~la~~l~~~G~~Vi~~~r~~~~~----~~~~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 84 (247)
T PRK08945 9 LLKDRIILVTGAGDGIGREAALTYARHGATVILLGRTEEKL----EAVYDEIEAAGGPQPAIIPLDLLTATPQNYQQLAD 84 (247)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCCcEEEEeCCHHHH----HHHHHHHHhcCCCCceEEEecccCCCHHHHHHHHH
Confidence 35789999999999999999999999999999999964321 11111111 2235778888886 6666655554
Q ss_pred cC-----CccEEEEcccccCh-----hhhccChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEEcCccccCCCCCCC
Q 012176 191 VV-----PFTHVLHLAAQAGV-----RYAMQNPQSYVASNIAGFVNLLEVCK----SVNPQPSIVWASSSSVYGLNTQVP 256 (469)
Q Consensus 191 ~~-----~~d~Vih~Aa~~~~-----~~~~~~~~~~~~~Nv~~~~~ll~aa~----~~~~~~~~V~~SS~~vyg~~~~~~ 256 (469)
.+ ++|+|||+||.... ....+.++..+++|+.++.++++++. +.+.. +||++||.....+.
T Consensus 85 ~~~~~~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~l~~~~~~-~iv~~ss~~~~~~~---- 159 (247)
T PRK08945 85 TIEEQFGRLDGVLHNAGLLGELGPMEQQDPEVWQDVMQVNVNATFMLTQALLPLLLKSPAA-SLVFTSSSVGRQGR---- 159 (247)
T ss_pred HHHHHhCCCCEEEECCcccCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhCCCC-EEEEEccHhhcCCC----
Confidence 32 57999999987433 12234456789999999999888764 34444 89999996544221
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCC
Q 012176 257 FSESHRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDR 333 (469)
Q Consensus 257 ~~E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 333 (469)
.....|+.+|.+.|.+++.++.++ ++++++++||.+-++-... .....
T Consensus 160 --------~~~~~Y~~sK~a~~~~~~~~~~~~~~~~i~~~~v~pg~v~t~~~~~----------~~~~~----------- 210 (247)
T PRK08945 160 --------ANWGAYAVSKFATEGMMQVLADEYQGTNLRVNCINPGGTRTAMRAS----------AFPGE----------- 210 (247)
T ss_pred --------CCCcccHHHHHHHHHHHHHHHHHhcccCEEEEEEecCCccCcchhh----------hcCcc-----------
Confidence 234579999999999999988765 6899999999886652110 00000
Q ss_pred cceEecccHHHHHHHHHHHhccCCCCCCCCCceEEE
Q 012176 334 EVARDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYN 369 (469)
Q Consensus 334 ~~~~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyn 369 (469)
....+...+|++++++.++..... ...|+++-
T Consensus 211 -~~~~~~~~~~~~~~~~~~~~~~~~---~~~g~~~~ 242 (247)
T PRK08945 211 -DPQKLKTPEDIMPLYLYLMGDDSR---RKNGQSFD 242 (247)
T ss_pred -cccCCCCHHHHHHHHHHHhCcccc---ccCCeEEe
Confidence 011356789999999998765432 23445543
|
|
| >PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.9e-16 Score=151.27 Aligned_cols=226 Identities=14% Similarity=0.052 Sum_probs=152.1
Q ss_pred CCCCCEEEEEcCCC--hhHHHHHHHHHHCCCcEEEEeCCCCCC-------ChhHHHHHHHhh-ccCCeEEEEecCCCHHH
Q 012176 115 RPNGMTVLVTGAAG--FVGSHCSLALKKRGDGVLGLDNFNSYY-------DPSLKRARQKLL-QKHQVFIVEGDLNDAPL 184 (469)
Q Consensus 115 ~~~~~~VlVtGatG--~IG~~l~~~L~~~G~~V~~~~r~~~~~-------~~~~~~~~~~~~-~~~~v~~v~~Dl~d~~~ 184 (469)
..++++|+||||+| .||.+++++|+++|++|++++|..... .....+...... ....+.++.+|++|.++
T Consensus 3 ~l~~k~vlVtGas~~~giG~~~a~~l~~~G~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~ 82 (256)
T PRK12859 3 QLKNKVAVVTGVSRLDGIGAAICKELAEAGADIFFTYWTAYDKEMPWGVDQDEQIQLQEELLKNGVKVSSMELDLTQNDA 82 (256)
T ss_pred CcCCcEEEEECCCCCCChHHHHHHHHHHCCCeEEEEecccccccccccccHHHHHHHHHHHHhcCCeEEEEEcCCCCHHH
Confidence 36789999999995 899999999999999999876432110 011111111111 12367889999999999
Q ss_pred HHHhhccC-----CccEEEEcccccCh----hhhccChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEEcCccccCC
Q 012176 185 LTKLFDVV-----PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVC----KSVNPQPSIVWASSSSVYGL 251 (469)
Q Consensus 185 l~~~~~~~-----~~d~Vih~Aa~~~~----~~~~~~~~~~~~~Nv~~~~~ll~aa----~~~~~~~~~V~~SS~~vyg~ 251 (469)
++++++.. ++|+||||||.... ....+..+..+++|+.+...+..++ ++.+. ++||++||...+.+
T Consensus 83 i~~~~~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~-g~iv~isS~~~~~~ 161 (256)
T PRK12859 83 PKELLNKVTEQLGYPHILVNNAAYSTNNDFSNLTAEELDKHYMVNVRATTLLSSQFARGFDKKSG-GRIINMTSGQFQGP 161 (256)
T ss_pred HHHHHHHHHHHcCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCC-eEEEEEcccccCCC
Confidence 88888643 47999999997432 1223445678999999988886554 32332 38999999765432
Q ss_pred CCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEe
Q 012176 252 NTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYK 328 (469)
Q Consensus 252 ~~~~~~~E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~ 328 (469)
. .+...|+.+|.+.+.+++.++.+ +|++++.|+||.+-.+.... .+...+....+.
T Consensus 162 ~------------~~~~~Y~~sK~a~~~l~~~la~~~~~~~i~v~~v~PG~i~t~~~~~-----~~~~~~~~~~~~---- 220 (256)
T PRK12859 162 M------------VGELAYAATKGAIDALTSSLAAEVAHLGITVNAINPGPTDTGWMTE-----EIKQGLLPMFPF---- 220 (256)
T ss_pred C------------CCchHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEEEccccCCCCCH-----HHHHHHHhcCCC----
Confidence 1 34578999999999999998865 48999999999987763221 111122211111
Q ss_pred eCCCCcceEecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCC
Q 012176 329 TQDDREVARDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNT 373 (469)
Q Consensus 329 ~~~~~~~~~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~ 373 (469)
..+...+|++++++.++..... -..|+++.+.++
T Consensus 221 --------~~~~~~~d~a~~~~~l~s~~~~---~~~G~~i~~dgg 254 (256)
T PRK12859 221 --------GRIGEPKDAARLIKFLASEEAE---WITGQIIHSEGG 254 (256)
T ss_pred --------CCCcCHHHHHHHHHHHhCcccc---CccCcEEEeCCC
Confidence 1234679999999888755322 234577766554
|
|
| >TIGR01831 fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductase, putative | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.2e-16 Score=151.97 Aligned_cols=219 Identities=14% Similarity=0.055 Sum_probs=150.7
Q ss_pred EEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhh-ccCCeEEEEecCCCHHHHHHhhccC-----Cc
Q 012176 121 VLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLL-QKHQVFIVEGDLNDAPLLTKLFDVV-----PF 194 (469)
Q Consensus 121 VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~v~~v~~Dl~d~~~l~~~~~~~-----~~ 194 (469)
|+||||+|+||.++++.|+++|++|++++|.... .......... ...++.++.+|++|.+++.++++.. ++
T Consensus 1 vlItGas~giG~~~a~~l~~~G~~v~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i 77 (239)
T TIGR01831 1 VLVTGASRGIGRAIANRLAADGFEICVHYHSGRS---DAESVVSAIQAQGGNARLLQFDVADRVACRTLLEADIAEHGAY 77 (239)
T ss_pred CEEeCCCchHHHHHHHHHHHCCCEEEEEeCCCHH---HHHHHHHHHHHcCCeEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 6899999999999999999999999999875421 1111111111 1346889999999999988887642 56
Q ss_pred cEEEEcccccCh----hhhccChHHHHHHHHHHHHHHHHHHH-----hcCCCCeEEEEcCccccCCCCCCCCCCCCCCCC
Q 012176 195 THVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCK-----SVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQ 265 (469)
Q Consensus 195 d~Vih~Aa~~~~----~~~~~~~~~~~~~Nv~~~~~ll~aa~-----~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~ 265 (469)
|++|||+|.... ....++++.++++|+.++.++++++. +.+. ++||++||...+.+. .
T Consensus 78 ~~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~-~~iv~vsS~~~~~~~------------~ 144 (239)
T TIGR01831 78 YGVVLNAGITRDAAFPALSEEDWDIVIHTNLDGFYNVIHPCTMPMIRARQG-GRIITLASVSGVMGN------------R 144 (239)
T ss_pred CEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcCC-eEEEEEcchhhccCC------------C
Confidence 999999986432 12345567789999999999988752 2333 489999996543221 2
Q ss_pred CCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceEecccH
Q 012176 266 PASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYI 342 (469)
Q Consensus 266 p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v 342 (469)
....|+.+|.+.+.+++.++.+ .|++++.++||.+.++..... ..........-++ ..+...
T Consensus 145 ~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~---~~~~~~~~~~~~~------------~~~~~~ 209 (239)
T TIGR01831 145 GQVNYSAAKAGLIGATKALAVELAKRKITVNCIAPGLIDTEMLAEV---EHDLDEALKTVPM------------NRMGQP 209 (239)
T ss_pred CCcchHHHHHHHHHHHHHHHHHHhHhCeEEEEEEEccCccccchhh---hHHHHHHHhcCCC------------CCCCCH
Confidence 3457999999999998888765 389999999999988754321 1112222222221 124467
Q ss_pred HHHHHHHHHHhccCCCCCCCCCceEEEeCCC
Q 012176 343 DDVVKGCVGATGSGGKKRGPAQLRVYNLGNT 373 (469)
Q Consensus 343 ~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~ 373 (469)
+|++++++.++..... -..|.+..+.++
T Consensus 210 ~~va~~~~~l~~~~~~---~~~g~~~~~~gg 237 (239)
T TIGR01831 210 AEVASLAGFLMSDGAS---YVTRQVISVNGG 237 (239)
T ss_pred HHHHHHHHHHcCchhc---CccCCEEEecCC
Confidence 9999999999875432 233455555543
|
This model represents a small, very well conserved family of proteins closely related to the FabG family, TIGR01830, and possibly equal in function. In all completed genomes with a member of this family, a FabG in TIGR01830 is also found. |
| >PRK06924 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.8e-17 Score=156.61 Aligned_cols=219 Identities=14% Similarity=0.096 Sum_probs=146.1
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccC------
Q 012176 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV------ 192 (469)
Q Consensus 119 ~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~------ 192 (469)
|+|+||||+|+||++++++|+++|++|++++|... +.+..... ....+++++.+|++|.++++++++.+
T Consensus 2 k~vlItGasggiG~~ia~~l~~~g~~V~~~~r~~~---~~~~~~~~--~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 76 (251)
T PRK06924 2 RYVIITGTSQGLGEAIANQLLEKGTHVISISRTEN---KELTKLAE--QYNSNLTFHSLDLQDVHELETNFNEILSSIQE 76 (251)
T ss_pred cEEEEecCCchHHHHHHHHHHhcCCEEEEEeCCch---HHHHHHHh--ccCCceEEEEecCCCHHHHHHHHHHHHHhcCc
Confidence 68999999999999999999999999999998542 11111111 11347889999999999998888653
Q ss_pred ---CccEEEEcccccCh-----hhhccChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEEcCccccCCCCCCCCCCC
Q 012176 193 ---PFTHVLHLAAQAGV-----RYAMQNPQSYVASNIAGFVNLLEVCK----SVNPQPSIVWASSSSVYGLNTQVPFSES 260 (469)
Q Consensus 193 ---~~d~Vih~Aa~~~~-----~~~~~~~~~~~~~Nv~~~~~ll~aa~----~~~~~~~~V~~SS~~vyg~~~~~~~~E~ 260 (469)
..+++||+||.... ..+.++....+++|+.+...+++.+. +.+..++||++||..++.+.
T Consensus 77 ~~~~~~~~v~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~-------- 148 (251)
T PRK06924 77 DNVSSIHLINNAGMVAPIKPIEKAESEELITNVHLNLLAPMILTSTFMKHTKDWKVDKRVINISSGAAKNPY-------- 148 (251)
T ss_pred ccCCceEEEEcceecccCcccccCCHHHHHHHhccceehHHHHHHHHHHHHhccCCCceEEEecchhhcCCC--------
Confidence 12289999987432 22334455678889998776666543 33333489999997654321
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHH-----hCCcEEEEeecceecCCCCC----CChHHHHHHHHHcCCceEEEeeCC
Q 012176 261 HRTDQPASLYAATKKAGEEIAHTYNHI-----YGLALTGLRFFTVYGPWGRP----DMAYFFFTKDILQGKTIDVYKTQD 331 (469)
Q Consensus 261 ~~~~~p~~~Y~~sK~~~E~~~~~~~~~-----~gi~~~ilRp~~v~Gp~~~~----~~~~~~~~~~~~~g~~~~~~~~~~ 331 (469)
.+...|+.+|.+.+.+++.++.+ ++++++.|+||.+-.+.... ........+......+
T Consensus 149 ----~~~~~Y~~sKaa~~~~~~~la~e~~~~~~~i~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~-------- 216 (251)
T PRK06924 149 ----FGWSAYCSSKAGLDMFTQTVATEQEEEEYPVKIVAFSPGVMDTNMQAQIRSSSKEDFTNLDRFITLKE-------- 216 (251)
T ss_pred ----CCcHHHhHHHHHHHHHHHHHHHHhhhcCCCeEEEEecCCccccHhHHHHHhcCcccchHHHHHHHHhh--------
Confidence 44678999999999999998865 36999999999887652110 0000001111111000
Q ss_pred CCcceEecccHHHHHHHHHHHhccCCCCCCCCCceEEEe
Q 012176 332 DREVARDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNL 370 (469)
Q Consensus 332 ~~~~~~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni 370 (469)
...+..++|+|+.++.++.... ...|+++.+
T Consensus 217 ----~~~~~~~~dva~~~~~l~~~~~----~~~G~~~~v 247 (251)
T PRK06924 217 ----EGKLLSPEYVAKALRNLLETED----FPNGEVIDI 247 (251)
T ss_pred ----cCCcCCHHHHHHHHHHHHhccc----CCCCCEeeh
Confidence 0125788999999999987642 233466554
|
|
| >PRK07578 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=8.5e-17 Score=148.83 Aligned_cols=191 Identities=19% Similarity=0.186 Sum_probs=142.5
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccC-CccEE
Q 012176 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV-PFTHV 197 (469)
Q Consensus 119 ~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~-~~d~V 197 (469)
|+++||||+|+||.+++++|.++ ++|++++|+.. .+.+|++|.++++++++.. ++|+|
T Consensus 1 ~~vlItGas~giG~~la~~l~~~-~~vi~~~r~~~--------------------~~~~D~~~~~~~~~~~~~~~~id~l 59 (199)
T PRK07578 1 MKILVIGASGTIGRAVVAELSKR-HEVITAGRSSG--------------------DVQVDITDPASIRALFEKVGKVDAV 59 (199)
T ss_pred CeEEEEcCCcHHHHHHHHHHHhc-CcEEEEecCCC--------------------ceEecCCChHHHHHHHHhcCCCCEE
Confidence 57999999999999999999999 99999998431 3678999999999998865 68999
Q ss_pred EEcccccChh----hhccChHHHHHHHHHHHHHHHHHHHhc-CCCCeEEEEcCccccCCCCCCCCCCCCCCCCCCChHHH
Q 012176 198 LHLAAQAGVR----YAMQNPQSYVASNIAGFVNLLEVCKSV-NPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAA 272 (469)
Q Consensus 198 ih~Aa~~~~~----~~~~~~~~~~~~Nv~~~~~ll~aa~~~-~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y~~ 272 (469)
|||||..... ...++.+..+++|+.++.++++++... ....+|+++||.....+. .....|+.
T Consensus 60 v~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~iss~~~~~~~------------~~~~~Y~~ 127 (199)
T PRK07578 60 VSAAGKVHFAPLAEMTDEDFNVGLQSKLMGQVNLVLIGQHYLNDGGSFTLTSGILSDEPI------------PGGASAAT 127 (199)
T ss_pred EECCCCCCCCchhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEcccccCCCC------------CCchHHHH
Confidence 9999964321 223455678899999999999987643 112379999986543211 23567999
Q ss_pred HHHHHHHHHHHHHHH--hCCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceEecccHHHHHHHHH
Q 012176 273 TKKAGEEIAHTYNHI--YGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCV 350 (469)
Q Consensus 273 sK~~~E~~~~~~~~~--~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~~~~ 350 (469)
+|.+.+.+++.++.+ .|++++.|+||.+-.+... + +..+ . . ..++.++|+|++++
T Consensus 128 sK~a~~~~~~~la~e~~~gi~v~~i~Pg~v~t~~~~-------~------~~~~--~-----~---~~~~~~~~~a~~~~ 184 (199)
T PRK07578 128 VNGALEGFVKAAALELPRGIRINVVSPTVLTESLEK-------Y------GPFF--P-----G---FEPVPAARVALAYV 184 (199)
T ss_pred HHHHHHHHHHHHHHHccCCeEEEEEcCCcccCchhh-------h------hhcC--C-----C---CCCCCHHHHHHHHH
Confidence 999999999988876 4899999999987543110 0 0000 0 1 23578999999999
Q ss_pred HHhccCCCCCCCCCceEEEeC
Q 012176 351 GATGSGGKKRGPAQLRVYNLG 371 (469)
Q Consensus 351 ~~~~~~~~~~~~~~~~iyni~ 371 (469)
.++... ..|++|+++
T Consensus 185 ~~~~~~------~~g~~~~~~ 199 (199)
T PRK07578 185 RSVEGA------QTGEVYKVG 199 (199)
T ss_pred HHhccc------eeeEEeccC
Confidence 998753 344888764
|
|
| >PRK06953 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.9e-16 Score=149.15 Aligned_cols=203 Identities=18% Similarity=0.122 Sum_probs=147.0
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccC---Ccc
Q 012176 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV---PFT 195 (469)
Q Consensus 119 ~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~---~~d 195 (469)
++++||||+|+||++++++|+++|++|++++|..+. ..+ +...+++++.+|++|.+.++++++.. ++|
T Consensus 2 ~~vlvtG~sg~iG~~la~~L~~~G~~v~~~~r~~~~----~~~-----~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~d 72 (222)
T PRK06953 2 KTVLIVGASRGIGREFVRQYRADGWRVIATARDAAA----LAA-----LQALGAEALALDVADPASVAGLAWKLDGEALD 72 (222)
T ss_pred ceEEEEcCCCchhHHHHHHHHhCCCEEEEEECCHHH----HHH-----HHhccceEEEecCCCHHHHHHHHHHhcCCCCC
Confidence 689999999999999999999999999999985431 111 11225678999999999998875433 589
Q ss_pred EEEEcccccChh------hhccChHHHHHHHHHHHHHHHHHHHhc--CCCCeEEEEcCc-cccCCCCCCCCCCCCCCCCC
Q 012176 196 HVLHLAAQAGVR------YAMQNPQSYVASNIAGFVNLLEVCKSV--NPQPSIVWASSS-SVYGLNTQVPFSESHRTDQP 266 (469)
Q Consensus 196 ~Vih~Aa~~~~~------~~~~~~~~~~~~Nv~~~~~ll~aa~~~--~~~~~~V~~SS~-~vyg~~~~~~~~E~~~~~~p 266 (469)
+|||++|..... ...++++..++.|+.++.++++++... ....++|++||. ++++.... .+
T Consensus 73 ~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~g~iv~isS~~~~~~~~~~----------~~ 142 (222)
T PRK06953 73 AAVYVAGVYGPRTEGVEPITREDFDAVMHTNVLGPMQLLPILLPLVEAAGGVLAVLSSRMGSIGDATG----------TT 142 (222)
T ss_pred EEEECCCcccCCCCCcccCCHHHHHHHHhhhhhhHHHHHHHHHHhhhccCCeEEEEcCcccccccccC----------CC
Confidence 999999975321 234456789999999999999988642 112379999985 44442211 12
Q ss_pred CChHHHHHHHHHHHHHHHHHHh-CCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceEecccHHHH
Q 012176 267 ASLYAATKKAGEEIAHTYNHIY-GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDV 345 (469)
Q Consensus 267 ~~~Y~~sK~~~E~~~~~~~~~~-gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dv 345 (469)
...|+.+|...+.+++.++.++ +++++.++||.+..+.... ...+..+|.
T Consensus 143 ~~~Y~~sK~a~~~~~~~~~~~~~~i~v~~v~Pg~i~t~~~~~-----------------------------~~~~~~~~~ 193 (222)
T PRK06953 143 GWLYRASKAALNDALRAASLQARHATCIALHPGWVRTDMGGA-----------------------------QAALDPAQS 193 (222)
T ss_pred ccccHHhHHHHHHHHHHHhhhccCcEEEEECCCeeecCCCCC-----------------------------CCCCCHHHH
Confidence 2469999999999999988765 7999999999988763220 012457899
Q ss_pred HHHHHHHhccCCCCCCCCCceEEEeCC
Q 012176 346 VKGCVGATGSGGKKRGPAQLRVYNLGN 372 (469)
Q Consensus 346 a~~~~~~~~~~~~~~~~~~~~iyni~~ 372 (469)
++.++.++..... ...++.|...+
T Consensus 194 ~~~~~~~~~~~~~---~~~~~~~~~~~ 217 (222)
T PRK06953 194 VAGMRRVIAQATR---RDNGRFFQYDG 217 (222)
T ss_pred HHHHHHHHHhcCc---ccCceEEeeCC
Confidence 9999888765421 34456665443
|
|
| >PRK05855 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.74 E-value=4.9e-17 Score=174.56 Aligned_cols=174 Identities=18% Similarity=0.153 Sum_probs=134.2
Q ss_pred CCCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhh-ccCCeEEEEecCCCHHHHHHhhccC
Q 012176 114 RRPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLL-QKHQVFIVEGDLNDAPLLTKLFDVV 192 (469)
Q Consensus 114 ~~~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~v~~v~~Dl~d~~~l~~~~~~~ 192 (469)
....++++|||||+|+||++++++|+++|++|++++|+.+. ......... ...++.++.+|++|+++++++++.+
T Consensus 311 ~~~~~~~~lv~G~s~giG~~~a~~l~~~G~~v~~~~r~~~~----~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~ 386 (582)
T PRK05855 311 GPFSGKLVVVTGAGSGIGRETALAFAREGAEVVASDIDEAA----AERTAELIRAAGAVAHAYRVDVSDADAMEAFAEWV 386 (582)
T ss_pred ccCCCCEEEEECCcCHHHHHHHHHHHHCCCEEEEEeCCHHH----HHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHH
Confidence 33567899999999999999999999999999999995431 111111111 1236889999999999998888764
Q ss_pred -----CccEEEEcccccChh----hhccChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEEcCccccCCCCCCCCCC
Q 012176 193 -----PFTHVLHLAAQAGVR----YAMQNPQSYVASNIAGFVNLLEVCK----SVNPQPSIVWASSSSVYGLNTQVPFSE 259 (469)
Q Consensus 193 -----~~d~Vih~Aa~~~~~----~~~~~~~~~~~~Nv~~~~~ll~aa~----~~~~~~~~V~~SS~~vyg~~~~~~~~E 259 (469)
++|+||||||..... ...++.+.++++|+.|+.++++++. +.+..++||++||.+.|.+.
T Consensus 387 ~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~------- 459 (582)
T PRK05855 387 RAEHGVPDIVVNNAGIGMAGGFLDTSAEDWDRVLDVNLWGVIHGCRLFGRQMVERGTGGHIVNVASAAAYAPS------- 459 (582)
T ss_pred HHhcCCCcEEEECCccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEECChhhccCC-------
Confidence 579999999974321 2334556788999999999888753 33433489999998887643
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeecceecC
Q 012176 260 SHRTDQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGP 303 (469)
Q Consensus 260 ~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~Gp 303 (469)
.+...|+.+|.+.+.+++.++.+ +|+++++|+||.|-.+
T Consensus 460 -----~~~~~Y~~sKaa~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~ 501 (582)
T PRK05855 460 -----RSLPAYATSKAAVLMLSECLRAELAAAGIGVTAICPGFVDTN 501 (582)
T ss_pred -----CCCcHHHHHHHHHHHHHHHHHHHhcccCcEEEEEEeCCCccc
Confidence 34578999999999999988765 4899999999998765
|
|
| >COG0702 Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.74 E-value=6.3e-16 Score=149.89 Aligned_cols=224 Identities=24% Similarity=0.213 Sum_probs=167.4
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCccEEE
Q 012176 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTHVL 198 (469)
Q Consensus 119 ~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~d~Vi 198 (469)
|+||||||||++|++++++|+++|++|+++.|+.+ ...... .++++..+|+.|.+.+...++++ |.++
T Consensus 1 ~~ilV~GatG~~G~~~~~~L~~~~~~v~~~~r~~~---------~~~~~~-~~v~~~~~d~~~~~~l~~a~~G~--~~~~ 68 (275)
T COG0702 1 MKILVTGATGFVGGAVVRELLARGHEVRAAVRNPE---------AAAALA-GGVEVVLGDLRDPKSLVAGAKGV--DGVL 68 (275)
T ss_pred CeEEEEecccchHHHHHHHHHhCCCEEEEEEeCHH---------HHHhhc-CCcEEEEeccCCHhHHHHHhccc--cEEE
Confidence 57999999999999999999999999999999543 122222 69999999999999999999999 9999
Q ss_pred EcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcCccccCCCCCCCCCCCCCCCCCCChHHHHHHHHH
Q 012176 199 HLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGE 278 (469)
Q Consensus 199 h~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y~~sK~~~E 278 (469)
++.+... . .. ...........+..+++. .+.. +++++|...+.. ...+.|..+|...|
T Consensus 69 ~i~~~~~-~---~~--~~~~~~~~~~~~~a~~a~-~~~~-~~~~~s~~~~~~--------------~~~~~~~~~~~~~e 126 (275)
T COG0702 69 LISGLLD-G---SD--AFRAVQVTAVVRAAEAAG-AGVK-HGVSLSVLGADA--------------ASPSALARAKAAVE 126 (275)
T ss_pred EEecccc-c---cc--chhHHHHHHHHHHHHHhc-CCce-EEEEeccCCCCC--------------CCccHHHHHHHHHH
Confidence 9887532 1 11 112223333344444443 3344 889888755421 23467999999999
Q ss_pred HHHHHHHHHhCCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceEecccHHHHHHHHHHHhccCCC
Q 012176 279 EIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGATGSGGK 358 (469)
Q Consensus 279 ~~~~~~~~~~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~~~~~~~~~~~~ 358 (469)
..+.+ .|++.+++|+..+|...... ........+.+.... +....+++..+|++.++..++..+.
T Consensus 127 ~~l~~----sg~~~t~lr~~~~~~~~~~~-----~~~~~~~~~~~~~~~-----~~~~~~~i~~~d~a~~~~~~l~~~~- 191 (275)
T COG0702 127 AALRS----SGIPYTTLRRAAFYLGAGAA-----FIEAAEAAGLPVIPR-----GIGRLSPIAVDDVAEALAAALDAPA- 191 (275)
T ss_pred HHHHh----cCCCeEEEecCeeeeccchh-----HHHHHHhhCCceecC-----CCCceeeeEHHHHHHHHHHHhcCCc-
Confidence 99988 58999999977776654432 122333444444433 3338999999999999999998773
Q ss_pred CCCCCCceEEEeCCCCcccHHHHHHHHHHHhCCCccc
Q 012176 359 KRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKK 395 (469)
Q Consensus 359 ~~~~~~~~iyni~~~~~vt~~el~~~i~~~~g~~~~~ 395 (469)
..+++|.+++++..+..++.+.+.+..|++...
T Consensus 192 ----~~~~~~~l~g~~~~~~~~~~~~l~~~~gr~~~~ 224 (275)
T COG0702 192 ----TAGRTYELAGPEALTLAELASGLDYTIGRPVGL 224 (275)
T ss_pred ----ccCcEEEccCCceecHHHHHHHHHHHhCCccee
Confidence 445999999999999999999999999998765
|
|
| >PRK07832 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.2e-16 Score=153.36 Aligned_cols=209 Identities=14% Similarity=0.072 Sum_probs=142.9
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhh--ccCCeEEEEecCCCHHHHHHhhccC----
Q 012176 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLL--QKHQVFIVEGDLNDAPLLTKLFDVV---- 192 (469)
Q Consensus 119 ~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~v~~v~~Dl~d~~~l~~~~~~~---- 192 (469)
|+++||||+|+||.++++.|+++|++|++++|+.+ .......... ....+.++.+|++|+++++++++..
T Consensus 1 k~vlItGas~giG~~la~~la~~G~~vv~~~r~~~----~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 76 (272)
T PRK07832 1 KRCFVTGAASGIGRATALRLAAQGAELFLTDRDAD----GLAQTVADARALGGTVPEHRALDISDYDAVAAFAADIHAAH 76 (272)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHH----HHHHHHHHHHhcCCCcceEEEeeCCCHHHHHHHHHHHHHhc
Confidence 57999999999999999999999999999998543 1111111111 1123456789999999988777653
Q ss_pred -CccEEEEcccccCh----hhhccChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEEcCccccCCCCCCCCCCCCCC
Q 012176 193 -PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCKS----VNPQPSIVWASSSSVYGLNTQVPFSESHRT 263 (469)
Q Consensus 193 -~~d~Vih~Aa~~~~----~~~~~~~~~~~~~Nv~~~~~ll~aa~~----~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~ 263 (469)
++|+||||+|.... ....++.+..+++|+.++..+++++.. .+..++||++||...+.+.
T Consensus 77 ~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~g~ii~isS~~~~~~~----------- 145 (272)
T PRK07832 77 GSMDVVMNIAGISAWGTVDRLTHEQWRRMVDVNLMGPIHVIETFVPPMVAAGRGGHLVNVSSAAGLVAL----------- 145 (272)
T ss_pred CCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEEccccccCCC-----------
Confidence 47999999986432 123344567899999999999998642 2222489999996543211
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeecceecCCCCCCCh-----HHHHHHHHHcCCceEEEeeCCCCcc
Q 012176 264 DQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPDMA-----YFFFTKDILQGKTIDVYKTQDDREV 335 (469)
Q Consensus 264 ~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~Gp~~~~~~~-----~~~~~~~~~~g~~~~~~~~~~~~~~ 335 (469)
.....|+.+|.+.+.+.+.++.+ +++++++++||.+.++....... .......... ..
T Consensus 146 -~~~~~Y~~sK~a~~~~~~~l~~e~~~~~i~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~-------------~~ 211 (272)
T PRK07832 146 -PWHAAYSASKFGLRGLSEVLRFDLARHGIGVSVVVPGAVKTPLVNTVEIAGVDREDPRVQKWVD-------------RF 211 (272)
T ss_pred -CCCcchHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCcccCcchhcccccccCcchhhHHHHHH-------------hc
Confidence 23457999999999888877754 58999999999999874321000 0000000000 00
Q ss_pred eEecccHHHHHHHHHHHhccC
Q 012176 336 ARDFTYIDDVVKGCVGATGSG 356 (469)
Q Consensus 336 ~~~~v~v~Dva~~~~~~~~~~ 356 (469)
....+..+|+|++++.++.++
T Consensus 212 ~~~~~~~~~vA~~~~~~~~~~ 232 (272)
T PRK07832 212 RGHAVTPEKAAEKILAGVEKN 232 (272)
T ss_pred ccCCCCHHHHHHHHHHHHhcC
Confidence 112467999999999998654
|
|
| >PRK07889 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=4.3e-16 Score=150.14 Aligned_cols=227 Identities=13% Similarity=0.071 Sum_probs=152.0
Q ss_pred CCCCEEEEEcC--CChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccC-
Q 012176 116 PNGMTVLVTGA--AGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV- 192 (469)
Q Consensus 116 ~~~~~VlVtGa--tG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~- 192 (469)
..+++++|||| ++.||.+++++|+++|++|++++|+.. .+........ . ...+.++.+|++|+++++++++..
T Consensus 5 ~~~k~~lItGa~~s~GIG~a~a~~la~~G~~v~l~~r~~~--~~~~~~~~~~-~-~~~~~~~~~Dv~~~~~i~~~~~~~~ 80 (256)
T PRK07889 5 LEGKRILVTGVITDSSIAFHVARVAQEQGAEVVLTGFGRA--LRLTERIAKR-L-PEPAPVLELDVTNEEHLASLADRVR 80 (256)
T ss_pred ccCCEEEEeCCCCcchHHHHHHHHHHHCCCEEEEecCccc--hhHHHHHHHh-c-CCCCcEEeCCCCCHHHHHHHHHHHH
Confidence 56789999999 899999999999999999999987431 0111111111 1 125778999999999988887642
Q ss_pred ----CccEEEEcccccCh-----hh---hccChHHHHHHHHHHHHHHHHHHHhcC-CCCeEEEEcCccccCCCCCCCCCC
Q 012176 193 ----PFTHVLHLAAQAGV-----RY---AMQNPQSYVASNIAGFVNLLEVCKSVN-PQPSIVWASSSSVYGLNTQVPFSE 259 (469)
Q Consensus 193 ----~~d~Vih~Aa~~~~-----~~---~~~~~~~~~~~Nv~~~~~ll~aa~~~~-~~~~~V~~SS~~vyg~~~~~~~~E 259 (469)
++|++|||||.... .. ..++.+..+++|+.++..+++++...- ..+++|++|+.+..+
T Consensus 81 ~~~g~iD~li~nAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~m~~~g~Iv~is~~~~~~--------- 151 (256)
T PRK07889 81 EHVDGLDGVVHSIGFAPQSALGGNFLDAPWEDVATALHVSAYSLKSLAKALLPLMNEGGSIVGLDFDATVA--------- 151 (256)
T ss_pred HHcCCCcEEEEccccccccccCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHhcccCceEEEEeeccccc---------
Confidence 58999999997421 11 223445679999999998888765321 124799988643211
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcce
Q 012176 260 SHRTDQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVA 336 (469)
Q Consensus 260 ~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 336 (469)
......|+.+|.+.+.+++.++.+ +|++++.|.||.|..+............+.+.+..++.
T Consensus 152 ----~~~~~~Y~asKaal~~l~~~la~el~~~gIrvn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~p~~----------- 216 (256)
T PRK07889 152 ----WPAYDWMGVAKAALESTNRYLARDLGPRGIRVNLVAAGPIRTLAAKAIPGFELLEEGWDERAPLG----------- 216 (256)
T ss_pred ----CCccchhHHHHHHHHHHHHHHHHHhhhcCeEEEeeccCcccChhhhcccCcHHHHHHHHhcCccc-----------
Confidence 023456999999999999998876 48999999999997763221100011111111111110
Q ss_pred EecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCC
Q 012176 337 RDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNT 373 (469)
Q Consensus 337 ~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~ 373 (469)
+.+..++|+|++++.++..... ...|+++.+.++
T Consensus 217 ~~~~~p~evA~~v~~l~s~~~~---~~tG~~i~vdgg 250 (256)
T PRK07889 217 WDVKDPTPVARAVVALLSDWFP---ATTGEIVHVDGG 250 (256)
T ss_pred cccCCHHHHHHHHHHHhCcccc---cccceEEEEcCc
Confidence 1356789999999998865432 234577777665
|
|
| >PRK07023 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=4.3e-17 Score=155.59 Aligned_cols=165 Identities=21% Similarity=0.121 Sum_probs=125.7
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhcc------
Q 012176 118 GMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDV------ 191 (469)
Q Consensus 118 ~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~------ 191 (469)
+|+|+||||+|+||++++++|+++|++|++++|+... .. . .....++.++.+|+.|.+++++++++
T Consensus 1 ~~~vlItGasggiG~~ia~~l~~~G~~v~~~~r~~~~---~~----~-~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 72 (243)
T PRK07023 1 AVRAIVTGHSRGLGAALAEQLLQPGIAVLGVARSRHP---SL----A-AAAGERLAEVELDLSDAAAAAAWLAGDLLAAF 72 (243)
T ss_pred CceEEEecCCcchHHHHHHHHHhCCCEEEEEecCcch---hh----h-hccCCeEEEEEeccCCHHHHHHHHHHHHHHHh
Confidence 3689999999999999999999999999999986531 11 1 11123688999999999998886543
Q ss_pred ---CCccEEEEcccccChh-----hhccChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEEcCccccCCCCCCCCCC
Q 012176 192 ---VPFTHVLHLAAQAGVR-----YAMQNPQSYVASNIAGFVNLLEVCKS----VNPQPSIVWASSSSVYGLNTQVPFSE 259 (469)
Q Consensus 192 ---~~~d~Vih~Aa~~~~~-----~~~~~~~~~~~~Nv~~~~~ll~aa~~----~~~~~~~V~~SS~~vyg~~~~~~~~E 259 (469)
.++|++|||||..... ...++.+..+++|+.++..+++.+.. .+. ++||++||...+.+.
T Consensus 73 ~~~~~~~~~v~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~-~~iv~isS~~~~~~~------- 144 (243)
T PRK07023 73 VDGASRVLLINNAGTVEPIGPLATLDAAAIARAVGLNVAAPLMLTAALAQAASDAAE-RRILHISSGAARNAY------- 144 (243)
T ss_pred ccCCCceEEEEcCcccCCCCccccCCHHHHHHHeeeeehHHHHHHHHHHHHhhccCC-CEEEEEeChhhcCCC-------
Confidence 2579999999974321 12334567889999997777666543 333 389999998766432
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHH--hCCcEEEEeecceecC
Q 012176 260 SHRTDQPASLYAATKKAGEEIAHTYNHI--YGLALTGLRFFTVYGP 303 (469)
Q Consensus 260 ~~~~~~p~~~Y~~sK~~~E~~~~~~~~~--~gi~~~ilRp~~v~Gp 303 (469)
.+...|+.+|.+.|.+++.++.+ .++++++|+||.+-.+
T Consensus 145 -----~~~~~Y~~sK~a~~~~~~~~~~~~~~~i~v~~v~pg~~~t~ 185 (243)
T PRK07023 145 -----AGWSVYCATKAALDHHARAVALDANRALRIVSLAPGVVDTG 185 (243)
T ss_pred -----CCchHHHHHHHHHHHHHHHHHhcCCCCcEEEEecCCccccH
Confidence 34678999999999999988865 5899999999998654
|
|
| >PRK05884 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.3e-16 Score=148.76 Aligned_cols=203 Identities=13% Similarity=0.094 Sum_probs=146.0
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccC--CccE
Q 012176 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--PFTH 196 (469)
Q Consensus 119 ~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~--~~d~ 196 (469)
|+++||||+|+||+++++.|+++|++|++++|+.+ ...... +..++.++.+|++|+++++++++.. ++|+
T Consensus 1 m~vlItGas~giG~~ia~~l~~~g~~v~~~~r~~~----~~~~~~----~~~~~~~~~~D~~~~~~v~~~~~~~~~~id~ 72 (223)
T PRK05884 1 VEVLVTGGDTDLGRTIAEGFRNDGHKVTLVGARRD----DLEVAA----KELDVDAIVCDNTDPASLEEARGLFPHHLDT 72 (223)
T ss_pred CeEEEEeCCchHHHHHHHHHHHCCCEEEEEeCCHH----HHHHHH----HhccCcEEecCCCCHHHHHHHHHHHhhcCcE
Confidence 47999999999999999999999999999998532 111111 1125678899999999999888753 4799
Q ss_pred EEEcccccC----h---hh--hccChHHHHHHHHHHHHHHHHHHHhc-CCCCeEEEEcCccccCCCCCCCCCCCCCCCCC
Q 012176 197 VLHLAAQAG----V---RY--AMQNPQSYVASNIAGFVNLLEVCKSV-NPQPSIVWASSSSVYGLNTQVPFSESHRTDQP 266 (469)
Q Consensus 197 Vih~Aa~~~----~---~~--~~~~~~~~~~~Nv~~~~~ll~aa~~~-~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p 266 (469)
+|||||... . .. ..++.+..+++|+.++..+++++... ...++||++||... ..
T Consensus 73 lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~g~Iv~isS~~~----------------~~ 136 (223)
T PRK05884 73 IVNVPAPSWDAGDPRTYSLADTANAWRNALDATVLSAVLTVQSVGDHLRSGGSIISVVPENP----------------PA 136 (223)
T ss_pred EEECCCccccCCCCcccchhcCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCeEEEEecCCC----------------CC
Confidence 999998421 1 01 23456788999999999999987542 11248999998541 12
Q ss_pred CChHHHHHHHHHHHHHHHHHH---hCCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceEecccHH
Q 012176 267 ASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYID 343 (469)
Q Consensus 267 ~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~ 343 (469)
...|+.+|.+.+.+++.++.+ +|++++.|.||.+..+.. +.. ... . ...++
T Consensus 137 ~~~Y~asKaal~~~~~~la~e~~~~gI~v~~v~PG~v~t~~~----------~~~-~~~----------p-----~~~~~ 190 (223)
T PRK05884 137 GSAEAAIKAALSNWTAGQAAVFGTRGITINAVACGRSVQPGY----------DGL-SRT----------P-----PPVAA 190 (223)
T ss_pred ccccHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCccCchhh----------hhc-cCC----------C-----CCCHH
Confidence 357999999999999999876 479999999999865411 100 000 0 12679
Q ss_pred HHHHHHHHHhccCCCCCCCCCceEEEeCCCC
Q 012176 344 DVVKGCVGATGSGGKKRGPAQLRVYNLGNTS 374 (469)
Q Consensus 344 Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~ 374 (469)
|+++++..++..... ...|+++.+.++.
T Consensus 191 ~ia~~~~~l~s~~~~---~v~G~~i~vdgg~ 218 (223)
T PRK05884 191 EIARLALFLTTPAAR---HITGQTLHVSHGA 218 (223)
T ss_pred HHHHHHHHHcCchhh---ccCCcEEEeCCCe
Confidence 999999988765422 3345777776654
|
|
| >PRK06125 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.9e-16 Score=150.48 Aligned_cols=227 Identities=13% Similarity=0.011 Sum_probs=155.1
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhc--cCCeEEEEecCCCHHHHHHhhccC-
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQ--KHQVFIVEGDLNDAPLLTKLFDVV- 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~--~~~v~~v~~Dl~d~~~l~~~~~~~- 192 (469)
.++|+|+||||+|+||.++++.|+++|++|++++|+.+ ........... ..++.++.+|++|+++++++++..
T Consensus 5 ~~~k~vlItG~~~giG~~ia~~l~~~G~~V~~~~r~~~----~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~g 80 (259)
T PRK06125 5 LAGKRVLITGASKGIGAAAAEAFAAEGCHLHLVARDAD----ALEALAADLRAAHGVDVAVHALDLSSPEAREQLAAEAG 80 (259)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHH----HHHHHHHHHHhhcCCceEEEEecCCCHHHHHHHHHHhC
Confidence 46789999999999999999999999999999998543 11221111111 236889999999999999888754
Q ss_pred CccEEEEcccccCh----hhhccChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEEcCccccCCCCCCCCCCCCCCC
Q 012176 193 PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCK----SVNPQPSIVWASSSSVYGLNTQVPFSESHRTD 264 (469)
Q Consensus 193 ~~d~Vih~Aa~~~~----~~~~~~~~~~~~~Nv~~~~~ll~aa~----~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~ 264 (469)
++|++|||+|.... ....++.+..+++|+.+...+++++. +.+. +++|++||.....+ .
T Consensus 81 ~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~-g~iv~iss~~~~~~------------~ 147 (259)
T PRK06125 81 DIDILVNNAGAIPGGGLDDVDDAAWRAGWELKVFGYIDLTRLAYPRMKARGS-GVIVNVIGAAGENP------------D 147 (259)
T ss_pred CCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCC-cEEEEecCccccCC------------C
Confidence 58999999996432 12334556789999999998888763 3333 38999998643211 1
Q ss_pred CCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeecceecCCCCCC--------ChHHHHHHHHHcCCceEEEeeCCCC
Q 012176 265 QPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPD--------MAYFFFTKDILQGKTIDVYKTQDDR 333 (469)
Q Consensus 265 ~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~Gp~~~~~--------~~~~~~~~~~~~g~~~~~~~~~~~~ 333 (469)
.....|+.+|.+.+.+++.++.+ .|++++.|+||.+..+..... ..-....+.+...-+
T Consensus 148 ~~~~~y~ask~al~~~~~~la~e~~~~gi~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 217 (259)
T PRK06125 148 ADYICGSAGNAALMAFTRALGGKSLDDGVRVVGVNPGPVATDRMLTLLKGRARAELGDESRWQELLAGLP---------- 217 (259)
T ss_pred CCchHhHHHHHHHHHHHHHHHHHhCccCeEEEEEecCccccHHHHHHHHhhhhcccCCHHHHHHHhccCC----------
Confidence 23467999999999999998765 489999999999887621100 000001111111111
Q ss_pred cceEecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCC
Q 012176 334 EVARDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTS 374 (469)
Q Consensus 334 ~~~~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~ 374 (469)
...+..++|+|++++.++..... ...|.++.+.++.
T Consensus 218 --~~~~~~~~~va~~~~~l~~~~~~---~~~G~~i~vdgg~ 253 (259)
T PRK06125 218 --LGRPATPEEVADLVAFLASPRSG---YTSGTVVTVDGGI 253 (259)
T ss_pred --cCCCcCHHHHHHHHHHHcCchhc---cccCceEEecCCe
Confidence 12356789999999988764322 2355778777663
|
|
| >TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase | Back alignment and domain information |
|---|
Probab=99.73 E-value=9.4e-17 Score=155.09 Aligned_cols=228 Identities=17% Similarity=0.141 Sum_probs=154.0
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccC---
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~--- 192 (469)
.++++++||||+|+||.+++++|+++|++|++++|..+ ........ ....+..+.+|+.|.+++.++++.+
T Consensus 3 ~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~----~~~~l~~~--~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 76 (262)
T TIGR03325 3 LKGEVVLVTGGASGLGRAIVDRFVAEGARVAVLDKSAA----GLQELEAA--HGDAVVGVEGDVRSLDDHKEAVARCVAA 76 (262)
T ss_pred cCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHH----HHHHHHhh--cCCceEEEEeccCCHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999998542 11111111 1235888999999999888877653
Q ss_pred --CccEEEEcccccChh-----hhc----cChHHHHHHHHHHHHHHHHHHHhcC--CCCeEEEEcCccccCCCCCCCCCC
Q 012176 193 --PFTHVLHLAAQAGVR-----YAM----QNPQSYVASNIAGFVNLLEVCKSVN--PQPSIVWASSSSVYGLNTQVPFSE 259 (469)
Q Consensus 193 --~~d~Vih~Aa~~~~~-----~~~----~~~~~~~~~Nv~~~~~ll~aa~~~~--~~~~~V~~SS~~vyg~~~~~~~~E 259 (469)
++|++|||||..... ... ++.+..+++|+.++..+++++.... ..+++|++||...+.+.
T Consensus 77 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~g~iv~~sS~~~~~~~------- 149 (262)
T TIGR03325 77 FGKIDCLIPNAGIWDYSTALVDIPDDRIDEAFDEVFHINVKGYLLAVKAALPALVASRGSVIFTISNAGFYPN------- 149 (262)
T ss_pred hCCCCEEEECCCCCccCCccccCCchhhhHHHHHhheeecHhHHHHHHHHHHHHhhcCCCEEEEeccceecCC-------
Confidence 679999999863211 111 2356789999999999999886531 12378998886544211
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHHhC--CcEEEEeecceecCCCCCCCh-H-H----HH-HHHHHcCCceEEEeeC
Q 012176 260 SHRTDQPASLYAATKKAGEEIAHTYNHIYG--LALTGLRFFTVYGPWGRPDMA-Y-F----FF-TKDILQGKTIDVYKTQ 330 (469)
Q Consensus 260 ~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~g--i~~~ilRp~~v~Gp~~~~~~~-~-~----~~-~~~~~~g~~~~~~~~~ 330 (469)
.....|+.+|.+.+.+++.++.+++ ++++.|+||.|..+...+... . . .+ .....+.. +
T Consensus 150 -----~~~~~Y~~sKaa~~~l~~~la~e~~~~irvn~i~PG~i~t~~~~~~~~~~~~~~~~~~~~~~~~~~~-~------ 217 (262)
T TIGR03325 150 -----GGGPLYTAAKHAVVGLVKELAFELAPYVRVNGVAPGGMSSDLRGPKSLGMADKSISTVPLGDMLKSV-L------ 217 (262)
T ss_pred -----CCCchhHHHHHHHHHHHHHHHHhhccCeEEEEEecCCCcCCCccccccccccccccccchhhhhhhc-C------
Confidence 2345799999999999999998763 899999999998764321100 0 0 00 01111110 1
Q ss_pred CCCcceEecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCC
Q 012176 331 DDREVARDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTS 374 (469)
Q Consensus 331 ~~~~~~~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~ 374 (469)
....+...+|+|++++.++..... ....|+++.+.++.
T Consensus 218 ----p~~r~~~p~eva~~~~~l~s~~~~--~~~tG~~i~vdgg~ 255 (262)
T TIGR03325 218 ----PIGRMPDAEEYTGAYVFFATRGDT--VPATGAVLNYDGGM 255 (262)
T ss_pred ----CCCCCCChHHhhhheeeeecCCCc--ccccceEEEecCCe
Confidence 112356689999999888764321 02345788776653
|
Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase. |
| >PRK06940 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=4.2e-16 Score=151.79 Aligned_cols=233 Identities=17% Similarity=0.127 Sum_probs=152.6
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhc-cCCeEEEEecCCCHHHHHHhhccC----
Q 012176 118 GMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQ-KHQVFIVEGDLNDAPLLTKLFDVV---- 192 (469)
Q Consensus 118 ~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~v~~v~~Dl~d~~~l~~~~~~~---- 192 (469)
+|+++|||| |+||+++++.|. +|++|++++|+... .......... ...+.++.+|++|.++++++++..
T Consensus 2 ~k~~lItGa-~gIG~~la~~l~-~G~~Vv~~~r~~~~----~~~~~~~l~~~~~~~~~~~~Dv~d~~~i~~~~~~~~~~g 75 (275)
T PRK06940 2 KEVVVVIGA-GGIGQAIARRVG-AGKKVLLADYNEEN----LEAAAKTLREAGFDVSTQEVDVSSRESVKALAATAQTLG 75 (275)
T ss_pred CCEEEEECC-ChHHHHHHHHHh-CCCEEEEEeCCHHH----HHHHHHHHHhcCCeEEEEEeecCCHHHHHHHHHHHHhcC
Confidence 468999998 799999999996 89999999985431 2222222111 236888999999999998888642
Q ss_pred CccEEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhc-CCCCeEEEEcCccccCCCC-C----C---CCCCCC--
Q 012176 193 PFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSV-NPQPSIVWASSSSVYGLNT-Q----V---PFSESH-- 261 (469)
Q Consensus 193 ~~d~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~-~~~~~~V~~SS~~vyg~~~-~----~---~~~E~~-- 261 (469)
++|+||||||... ...+++.++++|+.++.++++++... ..++++|++||.+...... . . .++.++
T Consensus 76 ~id~li~nAG~~~---~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~iv~isS~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (275)
T PRK06940 76 PVTGLVHTAGVSP---SQASPEAILKVDLYGTALVLEEFGKVIAPGGAGVVIASQSGHRLPALTAEQERALATTPTEELL 152 (275)
T ss_pred CCCEEEECCCcCC---chhhHHHHHHHhhHHHHHHHHHHHHHHhhCCCEEEEEecccccCcccchhhhcccccccccccc
Confidence 5799999999743 23567889999999999999987643 1123678888865432210 0 0 000000
Q ss_pred ------C--CCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCCCC--ChHHHHHHHHHcCCceEEEe
Q 012176 262 ------R--TDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPD--MAYFFFTKDILQGKTIDVYK 328 (469)
Q Consensus 262 ------~--~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~~~--~~~~~~~~~~~~g~~~~~~~ 328 (469)
+ ...+...|+.+|.+.+.+++.++.++ |++++.|+||.|..+..... .........+....++
T Consensus 153 ~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~gIrvn~i~PG~v~T~~~~~~~~~~~~~~~~~~~~~~p~---- 228 (275)
T PRK06940 153 SLPFLQPDAIEDSLHAYQIAKRANALRVMAEAVKWGERGARINSISPGIISTPLAQDELNGPRGDGYRNMFAKSPA---- 228 (275)
T ss_pred ccccccccccCCccchhHHHHHHHHHHHHHHHHHHccCCeEEEEeccCcCcCccchhhhcCCchHHHHHHhhhCCc----
Confidence 0 00134679999999999999887664 79999999999987742210 0001112222221111
Q ss_pred eCCCCcceEecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCC
Q 012176 329 TQDDREVARDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTS 374 (469)
Q Consensus 329 ~~~~~~~~~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~ 374 (469)
..+...+|+|++++.++..... -..|+++.+.++.
T Consensus 229 --------~r~~~peeia~~~~fL~s~~~~---~itG~~i~vdgg~ 263 (275)
T PRK06940 229 --------GRPGTPDEIAALAEFLMGPRGS---FITGSDFLVDGGA 263 (275)
T ss_pred --------ccCCCHHHHHHHHHHHcCcccC---cccCceEEEcCCe
Confidence 1356789999999988754322 2345777776653
|
|
| >PLN02780 ketoreductase/ oxidoreductase | Back alignment and domain information |
|---|
Probab=99.73 E-value=4.4e-16 Score=154.80 Aligned_cols=199 Identities=15% Similarity=0.135 Sum_probs=139.8
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhc---cCCeEEEEecCCC--HHHHHH---h
Q 012176 117 NGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQ---KHQVFIVEGDLND--APLLTK---L 188 (469)
Q Consensus 117 ~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~---~~~v~~v~~Dl~d--~~~l~~---~ 188 (469)
.++.++||||+|+||++++++|+++|++|++++|+.+. +.....+... ...+..+.+|+++ .+.+++ .
T Consensus 52 ~g~~~lITGAs~GIG~alA~~La~~G~~Vil~~R~~~~----l~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~l~~~ 127 (320)
T PLN02780 52 YGSWALVTGPTDGIGKGFAFQLARKGLNLVLVARNPDK----LKDVSDSIQSKYSKTQIKTVVVDFSGDIDEGVKRIKET 127 (320)
T ss_pred cCCEEEEeCCCcHHHHHHHHHHHHCCCCEEEEECCHHH----HHHHHHHHHHHCCCcEEEEEEEECCCCcHHHHHHHHHH
Confidence 46899999999999999999999999999999996542 2222222211 2357788899985 343443 3
Q ss_pred hccCCccEEEEcccccCh------hhhccChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEEcCccccCCCCCCCCC
Q 012176 189 FDVVPFTHVLHLAAQAGV------RYAMQNPQSYVASNIAGFVNLLEVCK----SVNPQPSIVWASSSSVYGLNTQVPFS 258 (469)
Q Consensus 189 ~~~~~~d~Vih~Aa~~~~------~~~~~~~~~~~~~Nv~~~~~ll~aa~----~~~~~~~~V~~SS~~vyg~~~~~~~~ 258 (469)
+.+.++|++|||||.... +...++.+..+++|+.++..+++++. +.+. ++||++||.+.+....
T Consensus 128 ~~~~didilVnnAG~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~~~-g~IV~iSS~a~~~~~~----- 201 (320)
T PLN02780 128 IEGLDVGVLINNVGVSYPYARFFHEVDEELLKNLIKVNVEGTTKVTQAVLPGMLKRKK-GAIINIGSGAAIVIPS----- 201 (320)
T ss_pred hcCCCccEEEEecCcCCCCCcccccCCHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCC-cEEEEEechhhccCCC-----
Confidence 344456799999997432 11233445789999999999998864 3343 4999999976642110
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcc
Q 012176 259 ESHRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREV 335 (469)
Q Consensus 259 E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 335 (469)
......|+.+|.+.+.+.+.++.++ |+++++++||.|-.+-... ....
T Consensus 202 -----~p~~~~Y~aSKaal~~~~~~L~~El~~~gI~V~~v~PG~v~T~~~~~------------~~~~------------ 252 (320)
T PLN02780 202 -----DPLYAVYAATKAYIDQFSRCLYVEYKKSGIDVQCQVPLYVATKMASI------------RRSS------------ 252 (320)
T ss_pred -----CccchHHHHHHHHHHHHHHHHHHHHhccCeEEEEEeeCceecCcccc------------cCCC------------
Confidence 0235789999999999999998775 7999999999987752210 0000
Q ss_pred eEecccHHHHHHHHHHHhcc
Q 012176 336 ARDFTYIDDVVKGCVGATGS 355 (469)
Q Consensus 336 ~~~~v~v~Dva~~~~~~~~~ 355 (469)
......+++|+.++..+..
T Consensus 253 -~~~~~p~~~A~~~~~~~~~ 271 (320)
T PLN02780 253 -FLVPSSDGYARAALRWVGY 271 (320)
T ss_pred -CCCCCHHHHHHHHHHHhCC
Confidence 0124679999999999854
|
|
| >PRK07201 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.8e-16 Score=172.93 Aligned_cols=201 Identities=18% Similarity=0.150 Sum_probs=149.3
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhh-ccCCeEEEEecCCCHHHHHHhhccC--
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLL-QKHQVFIVEGDLNDAPLLTKLFDVV-- 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~v~~v~~Dl~d~~~l~~~~~~~-- 192 (469)
.++|+++||||+|+||.++++.|+++|++|++++|+.+. ......... ...++.++.+|++|.++++++++.+
T Consensus 369 ~~~k~vlItGas~giG~~la~~l~~~G~~V~~~~r~~~~----~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~ 444 (657)
T PRK07201 369 LVGKVVLITGASSGIGRATAIKVAEAGATVFLVARNGEA----LDELVAEIRAKGGTAHAYTCDLTDSAAVDHTVKDILA 444 (657)
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHH----HHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHH
Confidence 567899999999999999999999999999999995431 122111111 1346889999999999999888753
Q ss_pred ---CccEEEEcccccChhh---h---ccChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEEcCccccCCCCCCCCCC
Q 012176 193 ---PFTHVLHLAAQAGVRY---A---MQNPQSYVASNIAGFVNLLEVC----KSVNPQPSIVWASSSSVYGLNTQVPFSE 259 (469)
Q Consensus 193 ---~~d~Vih~Aa~~~~~~---~---~~~~~~~~~~Nv~~~~~ll~aa----~~~~~~~~~V~~SS~~vyg~~~~~~~~E 259 (469)
++|+||||||...... . .++.+.++++|+.++.++++++ ++.+.. +||++||.+++.+.
T Consensus 445 ~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g-~iv~isS~~~~~~~------- 516 (657)
T PRK07201 445 EHGHVDYLVNNAGRSIRRSVENSTDRFHDYERTMAVNYFGAVRLILGLLPHMRERRFG-HVVNVSSIGVQTNA------- 516 (657)
T ss_pred hcCCCCEEEECCCCCCCCChhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCC-EEEEECChhhcCCC-------
Confidence 5799999999642111 1 1345678999999998887765 334443 99999998887543
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcce
Q 012176 260 SHRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVA 336 (469)
Q Consensus 260 ~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 336 (469)
.....|+.+|.+.+.+++.++.++ |+++++|+||.|..+...+.. .+ ..
T Consensus 517 -----~~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~v~pg~v~T~~~~~~~----------------~~-------~~ 568 (657)
T PRK07201 517 -----PRFSAYVASKAALDAFSDVAASETLSDGITFTTIHMPLVRTPMIAPTK----------------RY-------NN 568 (657)
T ss_pred -----CCcchHHHHHHHHHHHHHHHHHHHHhhCCcEEEEECCcCcccccCccc----------------cc-------cC
Confidence 234679999999999999988664 899999999999887433210 00 00
Q ss_pred EecccHHHHHHHHHHHhccC
Q 012176 337 RDFTYIDDVVKGCVGATGSG 356 (469)
Q Consensus 337 ~~~v~v~Dva~~~~~~~~~~ 356 (469)
...+..+++|+.++..+...
T Consensus 569 ~~~~~~~~~a~~i~~~~~~~ 588 (657)
T PRK07201 569 VPTISPEEAADMVVRAIVEK 588 (657)
T ss_pred CCCCCHHHHHHHHHHHHHhC
Confidence 12467899999999987653
|
|
| >KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.71 E-value=2e-15 Score=142.87 Aligned_cols=204 Identities=17% Similarity=0.078 Sum_probs=152.0
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccC--
Q 012176 115 RPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV-- 192 (469)
Q Consensus 115 ~~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~-- 192 (469)
+.+++.||||||+++||+.++.+|+++|.++.+.|.+++...+..+..+.. ..++.+.+|++|.+++.+..+.+
T Consensus 35 ~v~g~~vLITGgg~GlGr~ialefa~rg~~~vl~Din~~~~~etv~~~~~~----g~~~~y~cdis~~eei~~~a~~Vk~ 110 (300)
T KOG1201|consen 35 SVSGEIVLITGGGSGLGRLIALEFAKRGAKLVLWDINKQGNEETVKEIRKI----GEAKAYTCDISDREEIYRLAKKVKK 110 (300)
T ss_pred hccCCEEEEeCCCchHHHHHHHHHHHhCCeEEEEeccccchHHHHHHHHhc----CceeEEEecCCCHHHHHHHHHHHHH
Confidence 367899999999999999999999999999999999887655544444432 37999999999999987776543
Q ss_pred ---CccEEEEcccccChhh----hccChHHHHHHHHHHHHHHHHH----HHhcCCCCeEEEEcCccccCCCCCCCCCCCC
Q 012176 193 ---PFTHVLHLAAQAGVRY----AMQNPQSYVASNIAGFVNLLEV----CKSVNPQPSIVWASSSSVYGLNTQVPFSESH 261 (469)
Q Consensus 193 ---~~d~Vih~Aa~~~~~~----~~~~~~~~~~~Nv~~~~~ll~a----a~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~ 261 (469)
.+|++|||||...... +.+..+.++++|+.+......+ +.+.+. +|||.++|...+-+.
T Consensus 111 e~G~V~ILVNNAGI~~~~~ll~~~d~ei~k~~~vN~~~~f~t~kaFLP~M~~~~~-GHIV~IaS~aG~~g~--------- 180 (300)
T KOG1201|consen 111 EVGDVDILVNNAGIVTGKKLLDCSDEEIQKTFDVNTIAHFWTTKAFLPKMLENNN-GHIVTIASVAGLFGP--------- 180 (300)
T ss_pred hcCCceEEEeccccccCCCccCCCHHHHHHHHHHhhHHHHHHHHHHhHHHHhcCC-ceEEEehhhhcccCC---------
Confidence 5799999999855432 2334457899999997777666 444454 499999997654322
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHH------hCCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcc
Q 012176 262 RTDQPASLYAATKKAGEEIAHTYNHI------YGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREV 335 (469)
Q Consensus 262 ~~~~p~~~Y~~sK~~~E~~~~~~~~~------~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 335 (469)
.....|+.||.++...-+++..| .|++.+.++|+.+=.. ++ .+ .. ....
T Consensus 181 ---~gl~~YcaSK~a~vGfhesL~~EL~~~~~~~IktTlv~P~~i~Tg----------mf----~~-~~-------~~~~ 235 (300)
T KOG1201|consen 181 ---AGLADYCASKFAAVGFHESLSMELRALGKDGIKTTLVCPYFINTG----------MF----DG-AT-------PFPT 235 (300)
T ss_pred ---ccchhhhhhHHHHHHHHHHHHHHHHhcCCCCeeEEEEeeeecccc----------cc----CC-CC-------CCcc
Confidence 34577999999998887777654 2699999999986421 11 11 11 1234
Q ss_pred eEecccHHHHHHHHHHHhccCC
Q 012176 336 ARDFTYIDDVVKGCVGATGSGG 357 (469)
Q Consensus 336 ~~~~v~v~Dva~~~~~~~~~~~ 357 (469)
..+.+..+.||+-++.++....
T Consensus 236 l~P~L~p~~va~~Iv~ai~~n~ 257 (300)
T KOG1201|consen 236 LAPLLEPEYVAKRIVEAILTNQ 257 (300)
T ss_pred ccCCCCHHHHHHHHHHHHHcCC
Confidence 4678889999999999987663
|
|
| >TIGR01289 LPOR light-dependent protochlorophyllide reductase | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.2e-15 Score=151.53 Aligned_cols=223 Identities=14% Similarity=0.056 Sum_probs=145.3
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHCC-CcEEEEeCCCCCCChhHHHHHHHhh-ccCCeEEEEecCCCHHHHHHhhccC---
Q 012176 118 GMTVLVTGAAGFVGSHCSLALKKRG-DGVLGLDNFNSYYDPSLKRARQKLL-QKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (469)
Q Consensus 118 ~~~VlVtGatG~IG~~l~~~L~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~v~~v~~Dl~d~~~l~~~~~~~--- 192 (469)
+++++||||+++||.++++.|+++| ++|++++|+.+. ......... ....+.++.+|++|.++++++++..
T Consensus 3 ~k~vlITGas~GIG~aia~~L~~~G~~~V~l~~r~~~~----~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~ 78 (314)
T TIGR01289 3 KPTVIITGASSGLGLYAAKALAATGEWHVIMACRDFLK----AEQAAKSLGMPKDSYTIMHLDLGSLDSVRQFVQQFRES 78 (314)
T ss_pred CCEEEEECCCChHHHHHHHHHHHcCCCEEEEEeCCHHH----HHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHHHHHHHh
Confidence 5789999999999999999999999 999999985431 111111111 1236788999999999988877652
Q ss_pred --CccEEEEcccccCh-----hhhccChHHHHHHHHHHHHHHHHHHH----hcCC-CCeEEEEcCccccCCCC----CCC
Q 012176 193 --PFTHVLHLAAQAGV-----RYAMQNPQSYVASNIAGFVNLLEVCK----SVNP-QPSIVWASSSSVYGLNT----QVP 256 (469)
Q Consensus 193 --~~d~Vih~Aa~~~~-----~~~~~~~~~~~~~Nv~~~~~ll~aa~----~~~~-~~~~V~~SS~~vyg~~~----~~~ 256 (469)
++|++|||||.... ....+..+..+++|+.++..+++++. +.+. .++||++||...+.... ..+
T Consensus 79 ~~~iD~lI~nAG~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~l~~m~~~~~~~g~IV~vsS~~~~~~~~~~~~~~~ 158 (314)
T TIGR01289 79 GRPLDALVCNAAVYFPTAKEPRFTADGFELSVGTNHLGHFLLCNLLLDDLKNSPNKDKRLIIVGSITGNTNTLAGNVPPK 158 (314)
T ss_pred CCCCCEEEECCCccccCccccccCHHHHHHHHhhhhhHHHHHHHHHHHHHHhCCCCCCeEEEEecCccccccCCCcCCCc
Confidence 58999999997432 12334556789999999888877643 3321 24999999987653210 001
Q ss_pred CCCC-----------------CCCCCCCChHHHHHHHHHHHHHHHHHH----hCCcEEEEeecceec-CCCCCCCh-HHH
Q 012176 257 FSES-----------------HRTDQPASLYAATKKAGEEIAHTYNHI----YGLALTGLRFFTVYG-PWGRPDMA-YFF 313 (469)
Q Consensus 257 ~~E~-----------------~~~~~p~~~Y~~sK~~~E~~~~~~~~~----~gi~~~ilRp~~v~G-p~~~~~~~-~~~ 313 (469)
.+.. .....+...|+.||.+...+.++++.+ .|+.++.|+||.|.. +....... ...
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~SK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~~T~l~~~~~~~~~~ 238 (314)
T TIGR01289 159 ANLGDLSGLAAGFKAPIAMIDGKEFKGAKAYKDSKVCNMLTVRELHRRFHDETGITFASLYPGCIADTGLFREHVPLFRT 238 (314)
T ss_pred ccccccccccccCCCcccccCCCCcchhhhHHHhHHHHHHHHHHHHHHhccCCCeEEEEecCCcccCCcccccccHHHHH
Confidence 1000 011235567999999988888888765 379999999999853 22221111 111
Q ss_pred HHHHHHcCCceEEEeeCCCCcceEecccHHHHHHHHHHHhccCC
Q 012176 314 FTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGATGSGG 357 (469)
Q Consensus 314 ~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~~~~~~~~~~~ 357 (469)
++..+... .. ..+..+++.++.++.++..+.
T Consensus 239 ~~~~~~~~---~~----------~~~~~~~~~a~~l~~~~~~~~ 269 (314)
T TIGR01289 239 LFPPFQKY---IT----------KGYVSEEEAGERLAQVVSDPK 269 (314)
T ss_pred HHHHHHHH---Hh----------ccccchhhhhhhhHHhhcCcc
Confidence 11111000 00 014568999999998877653
|
This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form. |
| >PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.5e-15 Score=156.62 Aligned_cols=224 Identities=17% Similarity=0.098 Sum_probs=152.8
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccC---
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~--- 192 (469)
..+++++||||+|+||..+++.|.++|++|++++|... .+.+... ....+...+.+|++|.++++++++..
T Consensus 208 ~~g~~vlItGasggIG~~la~~l~~~Ga~vi~~~~~~~--~~~l~~~----~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~ 281 (450)
T PRK08261 208 LAGKVALVTGAARGIGAAIAEVLARDGAHVVCLDVPAA--GEALAAV----ANRVGGTALALDITAPDAPARIAEHLAER 281 (450)
T ss_pred CCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCcc--HHHHHHH----HHHcCCeEEEEeCCCHHHHHHHHHHHHHh
Confidence 46789999999999999999999999999999988432 1111111 11224568899999999988887743
Q ss_pred --CccEEEEcccccCh----hhhccChHHHHHHHHHHHHHHHHHHHhcCC---CCeEEEEcCccccCCCCCCCCCCCCCC
Q 012176 193 --PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCKSVNP---QPSIVWASSSSVYGLNTQVPFSESHRT 263 (469)
Q Consensus 193 --~~d~Vih~Aa~~~~----~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~---~~~~V~~SS~~vyg~~~~~~~~E~~~~ 263 (469)
++|+||||||.... ....+..+..+++|+.++.++++++..... ..+||++||...+.+.
T Consensus 282 ~g~id~vi~~AG~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~g~iv~~SS~~~~~g~----------- 350 (450)
T PRK08261 282 HGGLDIVVHNAGITRDKTLANMDEARWDSVLAVNLLAPLRITEALLAAGALGDGGRIVGVSSISGIAGN----------- 350 (450)
T ss_pred CCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhhhcCCCEEEEECChhhcCCC-----------
Confidence 57999999997432 123345567899999999999999876322 2389999997654322
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceEecc
Q 012176 264 DQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFT 340 (469)
Q Consensus 264 ~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v 340 (469)
.....|+.+|...+.+++.++.+ .|+++++++||.+-.+..... +...+...+. ...+ ....
T Consensus 351 -~~~~~Y~asKaal~~~~~~la~el~~~gi~v~~v~PG~i~t~~~~~~---~~~~~~~~~~-~~~l----------~~~~ 415 (450)
T PRK08261 351 -RGQTNYAASKAGVIGLVQALAPLLAERGITINAVAPGFIETQMTAAI---PFATREAGRR-MNSL----------QQGG 415 (450)
T ss_pred -CCChHHHHHHHHHHHHHHHHHHHHhhhCcEEEEEEeCcCcchhhhcc---chhHHHHHhh-cCCc----------CCCC
Confidence 23567999999999888888754 489999999999865322110 0111111110 0011 1123
Q ss_pred cHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCC
Q 012176 341 YIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTS 374 (469)
Q Consensus 341 ~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~ 374 (469)
-.+|++++++.++..... ...|+++++.++.
T Consensus 416 ~p~dva~~~~~l~s~~~~---~itG~~i~v~g~~ 446 (450)
T PRK08261 416 LPVDVAETIAWLASPASG---GVTGNVVRVCGQS 446 (450)
T ss_pred CHHHHHHHHHHHhChhhc---CCCCCEEEECCCc
Confidence 367999999988754321 3456888887654
|
|
| >PRK06484 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.4e-15 Score=161.51 Aligned_cols=171 Identities=18% Similarity=0.170 Sum_probs=131.4
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccC---
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~--- 192 (469)
..+++++||||+++||.+++++|+++|++|++++|..+ .+....... ...+..+.+|++|+++++++++..
T Consensus 3 ~~~k~~lITGas~gIG~aia~~l~~~G~~V~~~~r~~~----~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~ 76 (520)
T PRK06484 3 AQSRVVLVTGAAGGIGRAACQRFARAGDQVVVADRNVE----RARERADSL--GPDHHALAMDVSDEAQIREGFEQLHRE 76 (520)
T ss_pred CCCeEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHH----HHHHHHHHh--CCceeEEEeccCCHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999998543 122211111 236778999999999998888753
Q ss_pred --CccEEEEcccccCh------hhhccChHHHHHHHHHHHHHHHHHHHhc----CCCCeEEEEcCccccCCCCCCCCCCC
Q 012176 193 --PFTHVLHLAAQAGV------RYAMQNPQSYVASNIAGFVNLLEVCKSV----NPQPSIVWASSSSVYGLNTQVPFSES 260 (469)
Q Consensus 193 --~~d~Vih~Aa~~~~------~~~~~~~~~~~~~Nv~~~~~ll~aa~~~----~~~~~~V~~SS~~vyg~~~~~~~~E~ 260 (469)
++|+||||||.... ....++.+.++++|+.++..+++++... +...+||++||.......
T Consensus 77 ~g~iD~li~nag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~~iv~isS~~~~~~~-------- 148 (520)
T PRK06484 77 FGRIDVLVNNAGVTDPTMTATLDTTLEEFARLQAINLTGAYLVAREALRLMIEQGHGAAIVNVASGAGLVAL-------- 148 (520)
T ss_pred hCCCCEEEECCCcCCCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCeEEEECCcccCCCC--------
Confidence 58999999986321 2234456789999999999999887643 222389999997654322
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCC
Q 012176 261 HRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPW 304 (469)
Q Consensus 261 ~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~ 304 (469)
.....|+.+|.+.+.+++.++.++ +++++.|+||.|..+.
T Consensus 149 ----~~~~~Y~asKaal~~l~~~la~e~~~~~i~v~~i~Pg~v~t~~ 191 (520)
T PRK06484 149 ----PKRTAYSASKAAVISLTRSLACEWAAKGIRVNAVLPGYVRTQM 191 (520)
T ss_pred ----CCCchHHHHHHHHHHHHHHHHHHhhhhCeEEEEEccCCcCchh
Confidence 234679999999999999988764 7999999999987663
|
|
| >TIGR01500 sepiapter_red sepiapterin reductase | Back alignment and domain information |
|---|
Probab=99.69 E-value=9.8e-16 Score=147.49 Aligned_cols=209 Identities=16% Similarity=0.078 Sum_probs=141.5
Q ss_pred EEEEEcCCChhHHHHHHHHHH----CCCcEEEEeCCCCCCChhHHHHHHHhh---ccCCeEEEEecCCCHHHHHHhhccC
Q 012176 120 TVLVTGAAGFVGSHCSLALKK----RGDGVLGLDNFNSYYDPSLKRARQKLL---QKHQVFIVEGDLNDAPLLTKLFDVV 192 (469)
Q Consensus 120 ~VlVtGatG~IG~~l~~~L~~----~G~~V~~~~r~~~~~~~~~~~~~~~~~---~~~~v~~v~~Dl~d~~~l~~~~~~~ 192 (469)
.++||||+++||.+++++|++ .|++|++++|+.+. +........ ....+.++.+|++|.++++++++..
T Consensus 2 ~vlItGas~GIG~~~a~~la~~~~~~g~~V~~~~r~~~~----~~~~~~~l~~~~~~~~v~~~~~Dl~~~~~v~~~~~~~ 77 (256)
T TIGR01500 2 VCLVTGASRGFGRTIAQELAKCLKSPGSVLVLSARNDEA----LRQLKAEIGAERSGLRVVRVSLDLGAEAGLEQLLKAL 77 (256)
T ss_pred EEEEecCCCchHHHHHHHHHHhhccCCcEEEEEEcCHHH----HHHHHHHHHhcCCCceEEEEEeccCCHHHHHHHHHHH
Confidence 589999999999999999997 79999999996432 222222221 1236888999999999988877543
Q ss_pred ---------CccEEEEcccccChh---h----hccChHHHHHHHHHHHHHHHHHHHhc-----CCCCeEEEEcCccccCC
Q 012176 193 ---------PFTHVLHLAAQAGVR---Y----AMQNPQSYVASNIAGFVNLLEVCKSV-----NPQPSIVWASSSSVYGL 251 (469)
Q Consensus 193 ---------~~d~Vih~Aa~~~~~---~----~~~~~~~~~~~Nv~~~~~ll~aa~~~-----~~~~~~V~~SS~~vyg~ 251 (469)
+.|+||||||..... . ..++.+..+++|+.++..+++++... +..++||++||...+.+
T Consensus 78 ~~~~g~~~~~~~~lv~nAG~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~~~l~~~~~~~~~iv~isS~~~~~~ 157 (256)
T TIGR01500 78 RELPRPKGLQRLLLINNAGTLGDVSKGFVDLSDSTQVQNYWALNLTSMLCLTSSVLKAFKDSPGLNRTVVNISSLCAIQP 157 (256)
T ss_pred HhccccCCCceEEEEeCCcccCccccccccCCCHHHHHHHHHhhhHHHHHHHHHHHHHHhhcCCCCCEEEEECCHHhCCC
Confidence 136999999964321 1 12345678999999988888765432 22248999999765432
Q ss_pred CCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCCCCC---hHHHHHHHHHcCCceE
Q 012176 252 NTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDM---AYFFFTKDILQGKTID 325 (469)
Q Consensus 252 ~~~~~~~E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~~~~---~~~~~~~~~~~g~~~~ 325 (469)
. .....|+.+|.+.+.+++.++.++ |++++.++||.|-.+...... .-+.+...+....+
T Consensus 158 ~------------~~~~~Y~asKaal~~l~~~la~e~~~~~i~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~-- 223 (256)
T TIGR01500 158 F------------KGWALYCAGKAARDMLFQVLALEEKNPNVRVLNYAPGVLDTDMQQQVREESVDPDMRKGLQELKA-- 223 (256)
T ss_pred C------------CCchHHHHHHHHHHHHHHHHHHHhcCCCeEEEEecCCcccchHHHHHHHhcCChhHHHHHHHHHh--
Confidence 1 234679999999999999998764 799999999998765211000 00001111111111
Q ss_pred EEeeCCCCcceEecccHHHHHHHHHHHhccC
Q 012176 326 VYKTQDDREVARDFTYIDDVVKGCVGATGSG 356 (469)
Q Consensus 326 ~~~~~~~~~~~~~~v~v~Dva~~~~~~~~~~ 356 (469)
...+..++|+|+.++.++++.
T Consensus 224 ----------~~~~~~p~eva~~~~~l~~~~ 244 (256)
T TIGR01500 224 ----------KGKLVDPKVSAQKLLSLLEKD 244 (256)
T ss_pred ----------cCCCCCHHHHHHHHHHHHhcC
Confidence 112567899999999998643
|
This model describes sepiapterin reductase, a member of the short chain dehydrogenase/reductase family. The enzyme catalyzes the last step in the biosynthesis of tetrahydrobiopterin. A similar enzyme in Bacillus cereus was isolated for its ability to convert benzil to (S)-benzoin, a property sepiapterin reductase also shares. Cutoff scores for this model are set such that benzil reductase scores between trusted and noise cutoffs. |
| >PRK05599 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=3e-15 Score=143.32 Aligned_cols=196 Identities=17% Similarity=0.137 Sum_probs=137.5
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhc--cCCeEEEEecCCCHHHHHHhhccC----
Q 012176 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQ--KHQVFIVEGDLNDAPLLTKLFDVV---- 192 (469)
Q Consensus 119 ~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~--~~~v~~v~~Dl~d~~~l~~~~~~~---- 192 (469)
|+|+||||++.||..++++|. +|++|++++|+.+. .........+ ...+.++.+|++|.++++++++..
T Consensus 1 ~~vlItGas~GIG~aia~~l~-~g~~Vil~~r~~~~----~~~~~~~l~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 75 (246)
T PRK05599 1 MSILILGGTSDIAGEIATLLC-HGEDVVLAARRPEA----AQGLASDLRQRGATSVHVLSFDAQDLDTHRELVKQTQELA 75 (246)
T ss_pred CeEEEEeCccHHHHHHHHHHh-CCCEEEEEeCCHHH----HHHHHHHHHhccCCceEEEEcccCCHHHHHHHHHHHHHhc
Confidence 679999999999999999998 59999999986542 2222222222 124788999999999988877643
Q ss_pred -CccEEEEcccccChh----hhccChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEEcCccccCCCCCCCCCCCCCC
Q 012176 193 -PFTHVLHLAAQAGVR----YAMQNPQSYVASNIAGFVNLLEVC----KSVNPQPSIVWASSSSVYGLNTQVPFSESHRT 263 (469)
Q Consensus 193 -~~d~Vih~Aa~~~~~----~~~~~~~~~~~~Nv~~~~~ll~aa----~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~ 263 (469)
++|++|||||..... ....+..+..++|+.+...++.++ .+.+..++||++||...+-+.
T Consensus 76 g~id~lv~nag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~~~~g~Iv~isS~~~~~~~----------- 144 (246)
T PRK05599 76 GEISLAVVAFGILGDQERAETDEAHAVEIATVDYTAQVSMLTVLADELRAQTAPAAIVAFSSIAGWRAR----------- 144 (246)
T ss_pred CCCCEEEEecCcCCCchhhhcCcHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCCEEEEEeccccccCC-----------
Confidence 589999999975332 112223456778888877665543 333323489999997544221
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceEecc
Q 012176 264 DQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFT 340 (469)
Q Consensus 264 ~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v 340 (469)
.....|+.+|.+.+.+++.++.++ |++++.+.||.|..+.... ..+.+ . ..
T Consensus 145 -~~~~~Y~asKaa~~~~~~~la~el~~~~I~v~~v~PG~v~T~~~~~-------------~~~~~-------~-----~~ 198 (246)
T PRK05599 145 -RANYVYGSTKAGLDAFCQGLADSLHGSHVRLIIARPGFVIGSMTTG-------------MKPAP-------M-----SV 198 (246)
T ss_pred -cCCcchhhHHHHHHHHHHHHHHHhcCCCceEEEecCCcccchhhcC-------------CCCCC-------C-----CC
Confidence 234579999999999999998764 7999999999987752110 00000 0 14
Q ss_pred cHHHHHHHHHHHhccC
Q 012176 341 YIDDVVKGCVGATGSG 356 (469)
Q Consensus 341 ~v~Dva~~~~~~~~~~ 356 (469)
..+|+|++++.++.+.
T Consensus 199 ~pe~~a~~~~~~~~~~ 214 (246)
T PRK05599 199 YPRDVAAAVVSAITSS 214 (246)
T ss_pred CHHHHHHHHHHHHhcC
Confidence 5899999999998875
|
|
| >KOG0725 consensus Reductases with broad range of substrate specificities [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.5e-15 Score=144.08 Aligned_cols=236 Identities=15% Similarity=0.116 Sum_probs=159.7
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccC--
Q 012176 115 RPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV-- 192 (469)
Q Consensus 115 ~~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~-- 192 (469)
+..+|+++||||+..||+.++++|++.|++|++.+|..+..................+..+.+|+.+.++++++++..
T Consensus 5 ~l~gkvalVTG~s~GIG~aia~~la~~Ga~v~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~l~~~~~~ 84 (270)
T KOG0725|consen 5 RLAGKVALVTGGSSGIGKAIALLLAKAGAKVVITGRSEERLEETAQELGGLGYTGGKVLAIVCDVSKEVDVEKLVEFAVE 84 (270)
T ss_pred cCCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeeEEEECcCCCHHHHHHHHHHHHH
Confidence 478899999999999999999999999999999999765332222222222222446899999999988877666532
Q ss_pred ----CccEEEEcccccC-----hhhhccChHHHHHHHHHH-HHHHHHHHHhc---CCCCeEEEEcCccccCCCCCCCCCC
Q 012176 193 ----PFTHVLHLAAQAG-----VRYAMQNPQSYVASNIAG-FVNLLEVCKSV---NPQPSIVWASSSSVYGLNTQVPFSE 259 (469)
Q Consensus 193 ----~~d~Vih~Aa~~~-----~~~~~~~~~~~~~~Nv~~-~~~ll~aa~~~---~~~~~~V~~SS~~vyg~~~~~~~~E 259 (469)
++|++|||||... .+.+++.++..+++|+.| ...+..++..+ .....++++||.+.+.....
T Consensus 85 ~~~GkidiLvnnag~~~~~~~~~~~s~e~~d~~~~~Nl~G~~~~~~~~a~~~~~~~~gg~I~~~ss~~~~~~~~~----- 159 (270)
T KOG0725|consen 85 KFFGKIDILVNNAGALGLTGSILDLSEEVFDKIMATNLRGSAFCLKQAARPMLKKSKGGSIVNISSVAGVGPGPG----- 159 (270)
T ss_pred HhCCCCCEEEEcCCcCCCCCChhhCCHHHHHHHHhhhchhHHHHHHHHHHHHHHhcCCceEEEEeccccccCCCC-----
Confidence 6899999999744 234566777899999995 66666665432 22238999998766543211
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCCC---CChHHHHHHHHHcCCceEEEeeCCCC
Q 012176 260 SHRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRP---DMAYFFFTKDILQGKTIDVYKTQDDR 333 (469)
Q Consensus 260 ~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~~---~~~~~~~~~~~~~g~~~~~~~~~~~~ 333 (469)
.+ ..|+.+|.+.+++.+.++.++ |+++.+|-||.|..+.... ......+.+.......+
T Consensus 160 -----~~-~~Y~~sK~al~~ltr~lA~El~~~gIRvN~v~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~--------- 224 (270)
T KOG0725|consen 160 -----SG-VAYGVSKAALLQLTRSLAKELAKHGIRVNSVSPGLVKTSLRAAGLDDGEMEEFKEATDSKGAV--------- 224 (270)
T ss_pred -----Cc-ccchhHHHHHHHHHHHHHHHHhhcCcEEEEeecCcEeCCccccccccchhhHHhhhhcccccc---------
Confidence 22 689999999999999998764 8999999999998875110 01112232221111111
Q ss_pred cceEecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCC
Q 012176 334 EVARDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTS 374 (469)
Q Consensus 334 ~~~~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~ 374 (469)
..-.+.-.+|++..+..+...... -..|+.+.+.++.
T Consensus 225 -p~gr~g~~~eva~~~~fla~~~as---yitG~~i~vdgG~ 261 (270)
T KOG0725|consen 225 -PLGRVGTPEEVAEAAAFLASDDAS---YITGQTIIVDGGF 261 (270)
T ss_pred -ccCCccCHHHHHHhHHhhcCcccc---cccCCEEEEeCCE
Confidence 122355689999988887765422 1334566555543
|
|
| >PRK08177 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.2e-15 Score=143.84 Aligned_cols=169 Identities=19% Similarity=0.098 Sum_probs=124.9
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccC---Ccc
Q 012176 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV---PFT 195 (469)
Q Consensus 119 ~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~---~~d 195 (469)
++|+||||+|+||+++++.|+++|++|++++|+..... .. ....++.++.+|++|.++++++++.. ++|
T Consensus 2 k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~----~~----~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~id 73 (225)
T PRK08177 2 RTALIIGASRGLGLGLVDRLLERGWQVTATVRGPQQDT----AL----QALPGVHIEKLDMNDPASLDQLLQRLQGQRFD 73 (225)
T ss_pred CEEEEeCCCchHHHHHHHHHHhCCCEEEEEeCCCcchH----HH----HhccccceEEcCCCCHHHHHHHHHHhhcCCCC
Confidence 68999999999999999999999999999999754221 11 11236788899999999888887753 689
Q ss_pred EEEEcccccChh------hhccChHHHHHHHHHHHHHHHHHHHhcC--CCCeEEEEcCccccCCCCCCCCCCCCCCCCCC
Q 012176 196 HVLHLAAQAGVR------YAMQNPQSYVASNIAGFVNLLEVCKSVN--PQPSIVWASSSSVYGLNTQVPFSESHRTDQPA 267 (469)
Q Consensus 196 ~Vih~Aa~~~~~------~~~~~~~~~~~~Nv~~~~~ll~aa~~~~--~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~ 267 (469)
+||||||..... ...++....+.+|+.++..+++++...- ...+++++||.. |.... +...+.
T Consensus 74 ~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~iv~~ss~~--g~~~~-------~~~~~~ 144 (225)
T PRK08177 74 LLFVNAGISGPAHQSAADATAAEIGQLFLTNAIAPIRLARRLLGQVRPGQGVLAFMSSQL--GSVEL-------PDGGEM 144 (225)
T ss_pred EEEEcCcccCCCCCCcccCCHHHHhhheeeeeeHHHHHHHHHHHhhhhcCCEEEEEccCc--ccccc-------CCCCCc
Confidence 999999875321 1223445678889999999988875431 113788898743 22110 011234
Q ss_pred ChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCC
Q 012176 268 SLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPW 304 (469)
Q Consensus 268 ~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~ 304 (469)
..|+.+|.+.+.+++.++.++ +++++.++||.+-.+.
T Consensus 145 ~~Y~~sK~a~~~~~~~l~~e~~~~~i~v~~i~PG~i~t~~ 184 (225)
T PRK08177 145 PLYKASKAALNSMTRSFVAELGEPTLTVLSMHPGWVKTDM 184 (225)
T ss_pred cchHHHHHHHHHHHHHHHHHhhcCCeEEEEEcCCceecCC
Confidence 569999999999999998764 6999999999987764
|
|
| >PLN02730 enoyl-[acyl-carrier-protein] reductase | Back alignment and domain information |
|---|
Probab=99.66 E-value=9.1e-15 Score=143.63 Aligned_cols=230 Identities=10% Similarity=0.009 Sum_probs=148.1
Q ss_pred CCCCEEEEEcC--CChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHh------hcc----CCeEEEEecC--CC
Q 012176 116 PNGMTVLVTGA--AGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKL------LQK----HQVFIVEGDL--ND 181 (469)
Q Consensus 116 ~~~~~VlVtGa--tG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~------~~~----~~v~~v~~Dl--~d 181 (469)
.++|++||||| +..||.++++.|.++|++|++ .|.....+.......... ... .....+.+|+ .+
T Consensus 7 l~gk~alITGa~~s~GIG~a~A~~la~~Ga~Vv~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~ 85 (303)
T PLN02730 7 LRGKRAFIAGVADDNGYGWAIAKALAAAGAEILV-GTWVPALNIFETSLRRGKFDESRKLPDGSLMEITKVYPLDAVFDT 85 (303)
T ss_pred CCCCEEEEeCCCCCCcHHHHHHHHHHHCCCEEEE-EeCcchhhHHHHhhhccccchhhhcccccccCcCeeeecceecCc
Confidence 68999999999 899999999999999999988 554332221111111100 011 1246788888 33
Q ss_pred HH------------------HHHHhhccC-----CccEEEEcccccC----h--hhhccChHHHHHHHHHHHHHHHHHHH
Q 012176 182 AP------------------LLTKLFDVV-----PFTHVLHLAAQAG----V--RYAMQNPQSYVASNIAGFVNLLEVCK 232 (469)
Q Consensus 182 ~~------------------~l~~~~~~~-----~~d~Vih~Aa~~~----~--~~~~~~~~~~~~~Nv~~~~~ll~aa~ 232 (469)
++ +++++++.. ++|++|||||... + ....++.+.++++|+.++..+++++.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~G~iDiLVnNAG~~~~~~~~~~~~~~e~~~~~~~vN~~~~~~l~~~~~ 165 (303)
T PLN02730 86 PEDVPEDVKTNKRYAGSSNWTVQEVAESVKADFGSIDILVHSLANGPEVTKPLLETSRKGYLAAISASSYSFVSLLQHFG 165 (303)
T ss_pred cccCchhhhcccccccCCHHHHHHHHHHHHHHcCCCCEEEECCCccccCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHH
Confidence 33 566666542 5799999997421 1 23445667899999999999998865
Q ss_pred hcC-CCCeEEEEcCccccCCCCCCCCCCCCCCCCCC-ChHHHHHHHHHHHHHHHHHHh----CCcEEEEeecceecCCCC
Q 012176 233 SVN-PQPSIVWASSSSVYGLNTQVPFSESHRTDQPA-SLYAATKKAGEEIAHTYNHIY----GLALTGLRFFTVYGPWGR 306 (469)
Q Consensus 233 ~~~-~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~-~~Y~~sK~~~E~~~~~~~~~~----gi~~~ilRp~~v~Gp~~~ 306 (469)
..- ..++||++||....... ... ..|+.+|.+.+.+.+.++.++ |++++.|.||.|-.+...
T Consensus 166 p~m~~~G~II~isS~a~~~~~------------p~~~~~Y~asKaAl~~l~~~la~El~~~~gIrVn~V~PG~v~T~~~~ 233 (303)
T PLN02730 166 PIMNPGGASISLTYIASERII------------PGYGGGMSSAKAALESDTRVLAFEAGRKYKIRVNTISAGPLGSRAAK 233 (303)
T ss_pred HHHhcCCEEEEEechhhcCCC------------CCCchhhHHHHHHHHHHHHHHHHHhCcCCCeEEEEEeeCCccCchhh
Confidence 431 12489999996543211 112 369999999999999998763 699999999998776332
Q ss_pred CCChHHHHHHHHHcCCceEEEeeCCCCcceEecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCC
Q 012176 307 PDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNT 373 (469)
Q Consensus 307 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~ 373 (469)
................++ ..+...+|++.+++.++..... ...|+++.+.++
T Consensus 234 ~~~~~~~~~~~~~~~~pl------------~r~~~peevA~~~~fLaS~~a~---~itG~~l~vdGG 285 (303)
T PLN02730 234 AIGFIDDMIEYSYANAPL------------QKELTADEVGNAAAFLASPLAS---AITGATIYVDNG 285 (303)
T ss_pred cccccHHHHHHHHhcCCC------------CCCcCHHHHHHHHHHHhCcccc---CccCCEEEECCC
Confidence 110011222221111111 1245689999999998864432 234577766554
|
|
| >PRK08303 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=5.3e-15 Score=146.15 Aligned_cols=178 Identities=12% Similarity=0.097 Sum_probs=126.9
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCC------hhHHHHHHHhhc-cCCeEEEEecCCCHHHHHHh
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYD------PSLKRARQKLLQ-KHQVFIVEGDLNDAPLLTKL 188 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~------~~~~~~~~~~~~-~~~v~~v~~Dl~d~~~l~~~ 188 (469)
.++|+++||||+++||.+++++|++.|++|++++|+..... ............ ...+.++.+|++|+++++++
T Consensus 6 l~~k~~lITGgs~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~ 85 (305)
T PRK08303 6 LRGKVALVAGATRGAGRGIAVELGAAGATVYVTGRSTRARRSEYDRPETIEETAELVTAAGGRGIAVQVDHLVPEQVRAL 85 (305)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEecccccccccccccchHHHHHHHHHhcCCceEEEEcCCCCHHHHHHH
Confidence 56799999999999999999999999999999999743211 111111111111 23577899999999999888
Q ss_pred hccC-----CccEEEEcc-cccC-----hh---hhccChHHHHHHHHHHHHHHHHHHHhc---CCCCeEEEEcCccc-cC
Q 012176 189 FDVV-----PFTHVLHLA-AQAG-----VR---YAMQNPQSYVASNIAGFVNLLEVCKSV---NPQPSIVWASSSSV-YG 250 (469)
Q Consensus 189 ~~~~-----~~d~Vih~A-a~~~-----~~---~~~~~~~~~~~~Nv~~~~~ll~aa~~~---~~~~~~V~~SS~~v-yg 250 (469)
++.+ ++|++|||| |... .. ...++....+++|+.+...+++++... ...++||++||... ++
T Consensus 86 ~~~~~~~~g~iDilVnnA~g~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~lp~m~~~~~g~IV~isS~~~~~~ 165 (305)
T PRK08303 86 VERIDREQGRLDILVNDIWGGEKLFEWGKPVWEHSLDKGLRMLRLAIDTHLITSHFALPLLIRRPGGLVVEITDGTAEYN 165 (305)
T ss_pred HHHHHHHcCCccEEEECCcccccccccCCchhhcCHHHHHHHHHHhhHHHHHHHHHHHHHhhhCCCcEEEEECCcccccc
Confidence 8653 589999999 6321 11 112344567899999998888776432 11248999998543 22
Q ss_pred CCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecC
Q 012176 251 LNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGP 303 (469)
Q Consensus 251 ~~~~~~~~E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp 303 (469)
... ......|+.+|.+.+.+.+.++.++ ||+++.|.||.|-.+
T Consensus 166 ~~~----------~~~~~~Y~asKaal~~lt~~La~el~~~gIrVn~v~PG~v~T~ 211 (305)
T PRK08303 166 ATH----------YRLSVFYDLAKTSVNRLAFSLAHELAPHGATAVALTPGWLRSE 211 (305)
T ss_pred CcC----------CCCcchhHHHHHHHHHHHHHHHHHhhhcCcEEEEecCCccccH
Confidence 110 0123569999999999999988765 799999999998654
|
|
| >smart00822 PKS_KR This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain | Back alignment and domain information |
|---|
Probab=99.66 E-value=4.5e-15 Score=133.33 Aligned_cols=169 Identities=21% Similarity=0.167 Sum_probs=124.5
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCC-cEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccC-----
Q 012176 119 MTVLVTGAAGFVGSHCSLALKKRGD-GVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV----- 192 (469)
Q Consensus 119 ~~VlVtGatG~IG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~----- 192 (469)
++++||||+|+||.+++++|+++|+ .|+++.|..............-.....++.++.+|+++++.++++++..
T Consensus 1 ~~~li~Ga~~~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 80 (180)
T smart00822 1 GTYLITGGLGGLGLELARWLAERGARHLVLLSRSGPDAPGAAELLAELEALGAEVTVVACDVADRAALAAALAAIPARLG 80 (180)
T ss_pred CEEEEEcCCChHHHHHHHHHHHhhCCeEEEEeCCCCCCccHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 4799999999999999999999996 6888888654332211100111112346788999999999888877653
Q ss_pred CccEEEEcccccCh----hhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcCccccCCCCCCCCCCCCCCCCCCC
Q 012176 193 PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPAS 268 (469)
Q Consensus 193 ~~d~Vih~Aa~~~~----~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~ 268 (469)
++|+|||++|.... ....++.+..++.|+.++.++++++++.+.. ++|++||...+-+. ....
T Consensus 81 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~ii~~ss~~~~~~~------------~~~~ 147 (180)
T smart00822 81 PLRGVIHAAGVLDDGLLANLTPERFAAVLAPKVDGAWNLHELTRDLPLD-FFVLFSSVAGVLGN------------PGQA 147 (180)
T ss_pred CeeEEEEccccCCccccccCCHHHHHHhhchHhHHHHHHHHHhccCCcc-eEEEEccHHHhcCC------------CCch
Confidence 46999999996432 2233555678999999999999999877765 89999986443211 2346
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCcEEEEeeccee
Q 012176 269 LYAATKKAGEEIAHTYNHIYGLALTGLRFFTVY 301 (469)
Q Consensus 269 ~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~ 301 (469)
.|+.+|...+.+++.+.. .+++++.+.||.+-
T Consensus 148 ~y~~sk~~~~~~~~~~~~-~~~~~~~~~~g~~~ 179 (180)
T smart00822 148 NYAAANAFLDALAAHRRA-RGLPATSINWGAWA 179 (180)
T ss_pred hhHHHHHHHHHHHHHHHh-cCCceEEEeecccc
Confidence 799999999999966654 59999999988764
|
It uses NADPH to reduce the keto group to a hydroxy group. |
| >PRK09009 C factor cell-cell signaling protein; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.1e-14 Score=136.22 Aligned_cols=208 Identities=14% Similarity=0.067 Sum_probs=141.3
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCC--CcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccC-Ccc
Q 012176 119 MTVLVTGAAGFVGSHCSLALKKRG--DGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV-PFT 195 (469)
Q Consensus 119 ~~VlVtGatG~IG~~l~~~L~~~G--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~-~~d 195 (469)
|+|+||||+|+||++++++|+++| ..|....|..... .....+.++++|++|.++++++.+.. ++|
T Consensus 1 ~~vlItGas~gIG~~ia~~l~~~~~~~~v~~~~~~~~~~-----------~~~~~~~~~~~Dls~~~~~~~~~~~~~~id 69 (235)
T PRK09009 1 MNILIVGGSGGIGKAMVKQLLERYPDATVHATYRHHKPD-----------FQHDNVQWHALDVTDEAEIKQLSEQFTQLD 69 (235)
T ss_pred CEEEEECCCChHHHHHHHHHHHhCCCCEEEEEccCCccc-----------cccCceEEEEecCCCHHHHHHHHHhcCCCC
Confidence 689999999999999999999985 4555555533210 12347889999999999888766543 569
Q ss_pred EEEEcccccChh----------hhccChHHHHHHHHHHHHHHHHHHHhc----CCCCeEEEEcCccccCCCCCCCCCCCC
Q 012176 196 HVLHLAAQAGVR----------YAMQNPQSYVASNIAGFVNLLEVCKSV----NPQPSIVWASSSSVYGLNTQVPFSESH 261 (469)
Q Consensus 196 ~Vih~Aa~~~~~----------~~~~~~~~~~~~Nv~~~~~ll~aa~~~----~~~~~~V~~SS~~vyg~~~~~~~~E~~ 261 (469)
+||||||..... ...+.....+++|+.+...+++++... +. ++++++||.. +.. .+.
T Consensus 70 ~li~~aG~~~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~~~-~~i~~iss~~--~~~-----~~~- 140 (235)
T PRK09009 70 WLINCVGMLHTQDKGPEKSLQALDADFFLQNITLNTLPSLLLAKHFTPKLKQSES-AKFAVISAKV--GSI-----SDN- 140 (235)
T ss_pred EEEECCccccccccCcccccccCCHHHHHHHHHHHhHHHHHHHHHHHhhccccCC-ceEEEEeecc--ccc-----ccC-
Confidence 999999975321 011223467899999988888876542 22 3899998732 111 000
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHH-----hCCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcce
Q 012176 262 RTDQPASLYAATKKAGEEIAHTYNHI-----YGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVA 336 (469)
Q Consensus 262 ~~~~p~~~Y~~sK~~~E~~~~~~~~~-----~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 336 (469)
...+...|+.+|.+.+.+++.++.+ .+++++.+.||.+..+.... + ....+ .
T Consensus 141 -~~~~~~~Y~asK~a~~~~~~~la~e~~~~~~~i~v~~v~PG~v~t~~~~~------~----~~~~~------------~ 197 (235)
T PRK09009 141 -RLGGWYSYRASKAALNMFLKTLSIEWQRSLKHGVVLALHPGTTDTALSKP------F----QQNVP------------K 197 (235)
T ss_pred -CCCCcchhhhhHHHHHHHHHHHHHHhhcccCCeEEEEEcccceecCCCcc------h----hhccc------------c
Confidence 0134567999999999999999865 37899999999998764331 0 01111 1
Q ss_pred EecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCC
Q 012176 337 RDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGN 372 (469)
Q Consensus 337 ~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~ 372 (469)
..+...+|+|++++.++..... ...|..+.+.+
T Consensus 198 ~~~~~~~~~a~~~~~l~~~~~~---~~~g~~~~~~g 230 (235)
T PRK09009 198 GKLFTPEYVAQCLLGIIANATP---AQSGSFLAYDG 230 (235)
T ss_pred CCCCCHHHHHHHHHHHHHcCCh---hhCCcEEeeCC
Confidence 2256789999999999876532 12345555444
|
|
| >KOG1200 consensus Mitochondrial/plastidial beta-ketoacyl-ACP reductase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.65 E-value=5.3e-15 Score=130.30 Aligned_cols=224 Identities=15% Similarity=0.022 Sum_probs=158.1
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhc-cCCeEEEEecCCCHHHHHHhhccC--
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQ-KHQVFIVEGDLNDAPLLTKLFDVV-- 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~v~~v~~Dl~d~~~l~~~~~~~-- 192 (469)
...+.++||||+..||+++++.|.+.|++|.+.+++... .+.....+. ..+-..+.+|+.++++++..+++.
T Consensus 12 ~~sk~~~vtGg~sGIGrAia~~la~~Garv~v~dl~~~~-----A~ata~~L~g~~~h~aF~~DVS~a~~v~~~l~e~~k 86 (256)
T KOG1200|consen 12 LMSKVAAVTGGSSGIGRAIAQLLAKKGARVAVADLDSAA-----AEATAGDLGGYGDHSAFSCDVSKAHDVQNTLEEMEK 86 (256)
T ss_pred HhcceeEEecCCchHHHHHHHHHHhcCcEEEEeecchhh-----HHHHHhhcCCCCccceeeeccCcHHHHHHHHHHHHH
Confidence 455789999999999999999999999999999985541 122222233 346678999999999888776653
Q ss_pred ---CccEEEEcccccCh----hhhccChHHHHHHHHHHHHHHHHHHHhc----CCCC-eEEEEcCccccCCCCCCCCCCC
Q 012176 193 ---PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCKSV----NPQP-SIVWASSSSVYGLNTQVPFSES 260 (469)
Q Consensus 193 ---~~d~Vih~Aa~~~~----~~~~~~~~~~~~~Nv~~~~~ll~aa~~~----~~~~-~~V~~SS~~vyg~~~~~~~~E~ 260 (469)
.|+++|||||.... +...+++++.+.+|+.|+..+.+++.+. +..+ .||++||+-..-++
T Consensus 87 ~~g~psvlVncAGItrD~~Llrmkq~qwd~vi~vNL~gvfl~tqaa~r~~~~~~~~~~sIiNvsSIVGkiGN-------- 158 (256)
T KOG1200|consen 87 SLGTPSVLVNCAGITRDGLLLRMKQEQWDSVIAVNLTGVFLVTQAAVRAMVMNQQQGLSIINVSSIVGKIGN-------- 158 (256)
T ss_pred hcCCCcEEEEcCccccccceeeccHHHHHHHHHhhchhhHHHHHHHHHHHHHhcCCCceEEeehhhhccccc--------
Confidence 68999999998432 3445778899999999999998886543 2222 89999995322122
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceE
Q 012176 261 HRTDQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVAR 337 (469)
Q Consensus 261 ~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 337 (469)
..++.|+++|.-.-.+.+..+++ .+|++..+.||.|-.|-... .-+...+.+...-|+.-+
T Consensus 159 ----~GQtnYAAsK~GvIgftktaArEla~knIrvN~VlPGFI~tpMT~~--mp~~v~~ki~~~iPmgr~---------- 222 (256)
T KOG1200|consen 159 ----FGQTNYAASKGGVIGFTKTAARELARKNIRVNVVLPGFIATPMTEA--MPPKVLDKILGMIPMGRL---------- 222 (256)
T ss_pred ----ccchhhhhhcCceeeeeHHHHHHHhhcCceEeEeccccccChhhhh--cCHHHHHHHHccCCcccc----------
Confidence 34567888877554444433333 28999999999998884332 224677888888777665
Q ss_pred ecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCC
Q 012176 338 DFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNT 373 (469)
Q Consensus 338 ~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~ 373 (469)
-..+|+|..++.+...... -..|..+.++++
T Consensus 223 --G~~EevA~~V~fLAS~~ss---YiTG~t~evtGG 253 (256)
T KOG1200|consen 223 --GEAEEVANLVLFLASDASS---YITGTTLEVTGG 253 (256)
T ss_pred --CCHHHHHHHHHHHhccccc---cccceeEEEecc
Confidence 2359999988887633321 234477777665
|
|
| >PRK08862 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=6.2e-15 Score=139.42 Aligned_cols=169 Identities=13% Similarity=0.112 Sum_probs=123.6
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhc-cCCeEEEEecCCCHHHHHHhhccC--
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQ-KHQVFIVEGDLNDAPLLTKLFDVV-- 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~v~~v~~Dl~d~~~l~~~~~~~-- 192 (469)
.++++++||||++.||..++++|+++|++|++++|+.+.. .+....... ...+..+.+|+.|+++++++++..
T Consensus 3 ~~~k~~lVtGas~GIG~aia~~la~~G~~V~~~~r~~~~l----~~~~~~i~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 78 (227)
T PRK08862 3 IKSSIILITSAGSVLGRTISCHFARLGATLILCDQDQSAL----KDTYEQCSALTDNVYSFQLKDFSQESIRHLFDAIEQ 78 (227)
T ss_pred CCCeEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHHHH----HHHHHHHHhcCCCeEEEEccCCCHHHHHHHHHHHHH
Confidence 4678999999999999999999999999999999865422 222211111 235778889999999988777532
Q ss_pred ----CccEEEEcccccChh--h---hccChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEEcCccccCCCCCCCCCC
Q 012176 193 ----PFTHVLHLAAQAGVR--Y---AMQNPQSYVASNIAGFVNLLEVCK----SVNPQPSIVWASSSSVYGLNTQVPFSE 259 (469)
Q Consensus 193 ----~~d~Vih~Aa~~~~~--~---~~~~~~~~~~~Nv~~~~~ll~aa~----~~~~~~~~V~~SS~~vyg~~~~~~~~E 259 (469)
++|++|||||..... . ..++..+.++.|+.++..+++.+. +.+..+.||++||...+
T Consensus 79 ~~g~~iD~li~nag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~g~Iv~isS~~~~---------- 148 (227)
T PRK08862 79 QFNRAPDVLVNNWTSSPLPSLFDEQPSESFIQQLSSLASTLFTYGQVAAERMRKRNKKGVIVNVISHDDH---------- 148 (227)
T ss_pred HhCCCCCEEEECCccCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCceEEEEecCCCC----------
Confidence 589999999753221 1 122334567788888777766543 33323489999985432
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeecceecC
Q 012176 260 SHRTDQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGP 303 (469)
Q Consensus 260 ~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~Gp 303 (469)
.+...|+.+|.+.+.+.+.++.+ +|++++.|.||.+-.+
T Consensus 149 -----~~~~~Y~asKaal~~~~~~la~el~~~~Irvn~v~PG~i~t~ 190 (227)
T PRK08862 149 -----QDLTGVESSNALVSGFTHSWAKELTPFNIRVGGVVPSIFSAN 190 (227)
T ss_pred -----CCcchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCcCcCC
Confidence 12457999999999999998876 4799999999998776
|
|
| >PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.6e-14 Score=146.69 Aligned_cols=190 Identities=16% Similarity=0.091 Sum_probs=129.4
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCcc
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFT 195 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~d 195 (469)
.++|+|+||||+|+||++++++|.++|++|++++|+.+. ...... ....++..+.+|++|++.+.+.+.+. |
T Consensus 176 l~gK~VLITGASgGIG~aLA~~La~~G~~Vi~l~r~~~~----l~~~~~--~~~~~v~~v~~Dvsd~~~v~~~l~~I--D 247 (406)
T PRK07424 176 LKGKTVAVTGASGTLGQALLKELHQQGAKVVALTSNSDK----ITLEIN--GEDLPVKTLHWQVGQEAALAELLEKV--D 247 (406)
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHH----HHHHHh--hcCCCeEEEEeeCCCHHHHHHHhCCC--C
Confidence 567899999999999999999999999999999985431 111111 11225778899999999999988765 9
Q ss_pred EEEEcccccCh-hhhccChHHHHHHHHHHHHHHHHHHHh----cCC---CCeEEEEcCccccCCCCCCCCCCCCCCCCCC
Q 012176 196 HVLHLAAQAGV-RYAMQNPQSYVASNIAGFVNLLEVCKS----VNP---QPSIVWASSSSVYGLNTQVPFSESHRTDQPA 267 (469)
Q Consensus 196 ~Vih~Aa~~~~-~~~~~~~~~~~~~Nv~~~~~ll~aa~~----~~~---~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~ 267 (469)
++|||||.... +...++.+..+++|+.++.++++++.. .+. +..+|++|++.. . + ...
T Consensus 248 iLInnAGi~~~~~~s~e~~~~~~~vNv~g~i~Li~a~lp~m~~~~~~~~~~iiVn~Ssa~~-~------------~-~~~ 313 (406)
T PRK07424 248 ILIINHGINVHGERTPEAINKSYEVNTFSAWRLMELFFTTVKTNRDKATKEVWVNTSEAEV-N------------P-AFS 313 (406)
T ss_pred EEEECCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEEccccc-c------------C-CCc
Confidence 99999986322 233345678899999999999998643 221 123566654321 1 0 113
Q ss_pred ChHHHHHHHHHHHHHHHHHHhCCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceEecccHHHHHH
Q 012176 268 SLYAATKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVK 347 (469)
Q Consensus 268 ~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~ 347 (469)
..|+++|.+.+.+..-...+.++.+..+.||.+..+ + .+ ...+..+|+|+
T Consensus 314 ~~Y~ASKaAl~~l~~l~~~~~~~~I~~i~~gp~~t~-----~------------~~-------------~~~~spe~vA~ 363 (406)
T PRK07424 314 PLYELSKRALGDLVTLRRLDAPCVVRKLILGPFKSN-----L------------NP-------------IGVMSADWVAK 363 (406)
T ss_pred hHHHHHHHHHHHHHHHHHhCCCCceEEEEeCCCcCC-----C------------Cc-------------CCCCCHHHHHH
Confidence 469999999998764333334555555555442211 0 00 11357899999
Q ss_pred HHHHHhccCC
Q 012176 348 GCVGATGSGG 357 (469)
Q Consensus 348 ~~~~~~~~~~ 357 (469)
.++.+++++.
T Consensus 364 ~il~~i~~~~ 373 (406)
T PRK07424 364 QILKLAKRDF 373 (406)
T ss_pred HHHHHHHCCC
Confidence 9999998763
|
|
| >PRK12367 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=5.3e-14 Score=134.55 Aligned_cols=188 Identities=15% Similarity=0.106 Sum_probs=128.9
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCcc
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFT 195 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~d 195 (469)
.++++++||||+|+||++++++|+++|++|++++|+... ... .... .....+.+|++|.+++++.+... |
T Consensus 12 l~~k~~lITGas~gIG~ala~~l~~~G~~Vi~~~r~~~~---~~~----~~~~-~~~~~~~~D~~~~~~~~~~~~~i--D 81 (245)
T PRK12367 12 WQGKRIGITGASGALGKALTKAFRAKGAKVIGLTHSKIN---NSE----SNDE-SPNEWIKWECGKEESLDKQLASL--D 81 (245)
T ss_pred hCCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEECCchh---hhh----hhcc-CCCeEEEeeCCCHHHHHHhcCCC--C
Confidence 467899999999999999999999999999999986521 111 0111 12367889999999999888754 9
Q ss_pred EEEEcccccCh-hhhccChHHHHHHHHHHHHHHHHHHHhcC------CCCeEEEEcCccccCCCCCCCCCCCCCCCCCCC
Q 012176 196 HVLHLAAQAGV-RYAMQNPQSYVASNIAGFVNLLEVCKSVN------PQPSIVWASSSSVYGLNTQVPFSESHRTDQPAS 268 (469)
Q Consensus 196 ~Vih~Aa~~~~-~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~------~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~ 268 (469)
++|||||.... ....++++..+++|+.++..+++++...- ....++..||.+.... ....
T Consensus 82 ilVnnAG~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~~g~~iiv~ss~a~~~~-------------~~~~ 148 (245)
T PRK12367 82 VLILNHGINPGGRQDPENINKALEINALSSWRLLELFEDIALNNNSQIPKEIWVNTSEAEIQP-------------ALSP 148 (245)
T ss_pred EEEECCccCCcCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccCCCeEEEEEecccccCC-------------CCCc
Confidence 99999997332 23345677899999999999999865421 1213444445432211 1235
Q ss_pred hHHHHHHHHHHHHHHHHH-------HhCCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceEeccc
Q 012176 269 LYAATKKAGEEIAHTYNH-------IYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTY 341 (469)
Q Consensus 269 ~Y~~sK~~~E~~~~~~~~-------~~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~ 341 (469)
.|+.+|.+.+.+. .++. ..++.++.+.||.+..+-. + ...+.
T Consensus 149 ~Y~aSKaal~~~~-~l~~~l~~e~~~~~i~v~~~~pg~~~t~~~-----------------~-------------~~~~~ 197 (245)
T PRK12367 149 SYEISKRLIGQLV-SLKKNLLDKNERKKLIIRKLILGPFRSELN-----------------P-------------IGIMS 197 (245)
T ss_pred hhHHHHHHHHHHH-HHHHHHHHhhcccccEEEEecCCCcccccC-----------------c-------------cCCCC
Confidence 6999999986543 3332 2478888888877533210 0 01356
Q ss_pred HHHHHHHHHHHhccCC
Q 012176 342 IDDVVKGCVGATGSGG 357 (469)
Q Consensus 342 v~Dva~~~~~~~~~~~ 357 (469)
.+|+|+.++.++.+..
T Consensus 198 ~~~vA~~i~~~~~~~~ 213 (245)
T PRK12367 198 ADFVAKQILDQANLGL 213 (245)
T ss_pred HHHHHHHHHHHHhcCC
Confidence 8999999999987654
|
|
| >COG2910 Putative NADH-flavin reductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.4e-14 Score=125.36 Aligned_cols=208 Identities=14% Similarity=0.090 Sum_probs=148.8
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCccEEE
Q 012176 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTHVL 198 (469)
Q Consensus 119 ~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~d~Vi 198 (469)
|+|.|+||||.+|++|+++++++||+|++++|+.+... ..+++.+++.|+.|++.+.+.+.+. |+||
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~RGHeVTAivRn~~K~~-----------~~~~~~i~q~Difd~~~~a~~l~g~--DaVI 67 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKRGHEVTAIVRNASKLA-----------ARQGVTILQKDIFDLTSLASDLAGH--DAVI 67 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhCCCeeEEEEeChHhcc-----------ccccceeecccccChhhhHhhhcCC--ceEE
Confidence 68999999999999999999999999999999654211 1248899999999999999999988 9999
Q ss_pred EcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcCccc-cCCCCCCCCCCCCCCCCCCChHHHHHHHH
Q 012176 199 HLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSV-YGLNTQVPFSESHRTDQPASLYAATKKAG 277 (469)
Q Consensus 199 h~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS~~v-yg~~~~~~~~E~~~~~~p~~~Y~~sK~~~ 277 (469)
..-+.... +.+.. .......|++..+.+++. |++.++.++- |-.... --. |.+.-|...|..++..+
T Consensus 68 sA~~~~~~-----~~~~~---~~k~~~~li~~l~~agv~-RllVVGGAGSL~id~g~--rLv-D~p~fP~ey~~~A~~~a 135 (211)
T COG2910 68 SAFGAGAS-----DNDEL---HSKSIEALIEALKGAGVP-RLLVVGGAGSLEIDEGT--RLV-DTPDFPAEYKPEALAQA 135 (211)
T ss_pred EeccCCCC-----ChhHH---HHHHHHHHHHHHhhcCCe-eEEEEcCccceEEcCCc--eee-cCCCCchhHHHHHHHHH
Confidence 98765321 11111 222366778888888886 9888876543 322211 111 22225677788888888
Q ss_pred HHHHHHHHHHhCCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceEecccHHHHHHHHHHHhccCC
Q 012176 278 EEIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGATGSGG 357 (469)
Q Consensus 278 E~~~~~~~~~~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~~~~~~~~~~~ 357 (469)
| .+..+..+.+++||.|-|...+-|+.+.+. ..-|+...+.. ..--++|..+|.|-+++.-++++.
T Consensus 136 e-~L~~Lr~~~~l~WTfvSPaa~f~PGerTg~--------yrlggD~ll~n-----~~G~SrIS~aDYAiA~lDe~E~~~ 201 (211)
T COG2910 136 E-FLDSLRAEKSLDWTFVSPAAFFEPGERTGN--------YRLGGDQLLVN-----AKGESRISYADYAIAVLDELEKPQ 201 (211)
T ss_pred H-HHHHHhhccCcceEEeCcHHhcCCccccCc--------eEeccceEEEc-----CCCceeeeHHHHHHHHHHHHhccc
Confidence 8 456666666799999999999999766433 23355555552 222368889999999999999983
Q ss_pred CCCCCCCceEEEe
Q 012176 358 KKRGPAQLRVYNL 370 (469)
Q Consensus 358 ~~~~~~~~~iyni 370 (469)
...+.|.+
T Consensus 202 -----h~rqRftv 209 (211)
T COG2910 202 -----HIRQRFTV 209 (211)
T ss_pred -----ccceeeee
Confidence 44466654
|
|
| >PLN00015 protochlorophyllide reductase | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.6e-14 Score=141.57 Aligned_cols=177 Identities=16% Similarity=0.104 Sum_probs=121.5
Q ss_pred EEEcCCChhHHHHHHHHHHCC-CcEEEEeCCCCCCChhHHHHHHHhh-ccCCeEEEEecCCCHHHHHHhhccC-----Cc
Q 012176 122 LVTGAAGFVGSHCSLALKKRG-DGVLGLDNFNSYYDPSLKRARQKLL-QKHQVFIVEGDLNDAPLLTKLFDVV-----PF 194 (469)
Q Consensus 122 lVtGatG~IG~~l~~~L~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~v~~v~~Dl~d~~~l~~~~~~~-----~~ 194 (469)
+||||+++||.+++++|+++| ++|++.+|+.+. ......... ....+.++.+|++|.++++++++.. ++
T Consensus 1 lITGas~GIG~aia~~l~~~G~~~V~~~~r~~~~----~~~~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~~~i 76 (308)
T PLN00015 1 IITGASSGLGLATAKALAETGKWHVVMACRDFLK----AERAAKSAGMPKDSYTVMHLDLASLDSVRQFVDNFRRSGRPL 76 (308)
T ss_pred CEeCCCChHHHHHHHHHHHCCCCEEEEEeCCHHH----HHHHHHHhcCCCCeEEEEEecCCCHHHHHHHHHHHHhcCCCC
Confidence 599999999999999999999 999999985431 111111111 1236788999999999988887643 57
Q ss_pred cEEEEcccccCh-----hhhccChHHHHHHHHHHHHHHHHHHH----hcCC-CCeEEEEcCccccCCCC---CCC---CC
Q 012176 195 THVLHLAAQAGV-----RYAMQNPQSYVASNIAGFVNLLEVCK----SVNP-QPSIVWASSSSVYGLNT---QVP---FS 258 (469)
Q Consensus 195 d~Vih~Aa~~~~-----~~~~~~~~~~~~~Nv~~~~~ll~aa~----~~~~-~~~~V~~SS~~vyg~~~---~~~---~~ 258 (469)
|++|||||.... ....++.+..+++|+.|+..+++++. +.+. .++||++||...+-... ..+ +.
T Consensus 77 D~lInnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~l~~~~~~~g~IV~vsS~~~~~~~~~~~~~~~~~~~ 156 (308)
T PLN00015 77 DVLVCNAAVYLPTAKEPTFTADGFELSVGTNHLGHFLLSRLLLDDLKKSDYPSKRLIIVGSITGNTNTLAGNVPPKANLG 156 (308)
T ss_pred CEEEECCCcCCCCCCcCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCCCEEEEEeccccccccccccCCCccchh
Confidence 999999997432 12334556799999999888876643 3331 24999999976541100 000 00
Q ss_pred ----------CC-------CCCCCCCChHHHHHHHHHHHHHHHHHHh----CCcEEEEeecceec
Q 012176 259 ----------ES-------HRTDQPASLYAATKKAGEEIAHTYNHIY----GLALTGLRFFTVYG 302 (469)
Q Consensus 259 ----------E~-------~~~~~p~~~Y~~sK~~~E~~~~~~~~~~----gi~~~ilRp~~v~G 302 (469)
+. .....+...|+.||.+.+.+++.++.++ |+.++.++||.|..
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~aY~~SK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~~ 221 (308)
T PLN00015 157 DLRGLAGGLNGLNSSAMIDGGEFDGAKAYKDSKVCNMLTMQEFHRRYHEETGITFASLYPGCIAT 221 (308)
T ss_pred hhhhhhcccCCccchhhccccCCcHHHHHhHhHHHHHHHHHHHHHhhcccCCeEEEEecCCcccC
Confidence 00 0011345679999999777777777653 79999999999954
|
|
| >PF13561 adh_short_C2: Enoyl-(Acyl carrier protein) reductase; PDB: 2UV8_B 3HMJ_A 2VKZ_C 1O5I_A 2P91_C 2OP0_A 2OL4_B 1NHW_A 1NNU_B 2O2Y_B | Back alignment and domain information |
|---|
Probab=99.59 E-value=9.7e-15 Score=139.26 Aligned_cols=218 Identities=16% Similarity=0.119 Sum_probs=153.8
Q ss_pred cCC--ChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhcc------CCccE
Q 012176 125 GAA--GFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDV------VPFTH 196 (469)
Q Consensus 125 Gat--G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~------~~~d~ 196 (469)
|++ +.||..++++|+++|++|++++|+.+. +...........+..++.+|++|+++++++++. -++|+
T Consensus 1 g~~~s~GiG~aia~~l~~~Ga~V~~~~~~~~~----~~~~~~~l~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~g~iD~ 76 (241)
T PF13561_consen 1 GAGSSSGIGRAIARALAEEGANVILTDRNEEK----LADALEELAKEYGAEVIQCDLSDEESVEALFDEAVERFGGRIDI 76 (241)
T ss_dssp STSSTSHHHHHHHHHHHHTTEEEEEEESSHHH----HHHHHHHHHHHTTSEEEESCTTSHHHHHHHHHHHHHHHCSSESE
T ss_pred CCCCCCChHHHHHHHHHHCCCEEEEEeCChHH----HHHHHHHHHHHcCCceEeecCcchHHHHHHHHHHHhhcCCCeEE
Confidence 666 999999999999999999999996542 112222333333456799999999998888765 36799
Q ss_pred EEEcccccCh-----h---hhccChHHHHHHHHHHHHHHHHHHHhc-CCCCeEEEEcCccccCCCCCCCCCCCCCCCCCC
Q 012176 197 VLHLAAQAGV-----R---YAMQNPQSYVASNIAGFVNLLEVCKSV-NPQPSIVWASSSSVYGLNTQVPFSESHRTDQPA 267 (469)
Q Consensus 197 Vih~Aa~~~~-----~---~~~~~~~~~~~~Nv~~~~~ll~aa~~~-~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~ 267 (469)
+|||++.... . ...++....+++|+.+...+++++... ...+.+|++||....... ...
T Consensus 77 lV~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gsii~iss~~~~~~~------------~~~ 144 (241)
T PF13561_consen 77 LVNNAGISPPSNVEKPLLDLSEEDWDKTFDINVFSPFLLAQAALPLMKKGGSIINISSIAAQRPM------------PGY 144 (241)
T ss_dssp EEEEEESCTGGGTSSSGGGSHHHHHHHHHHHHTHHHHHHHHHHHHHHHHEEEEEEEEEGGGTSBS------------TTT
T ss_pred EEecccccccccCCCChHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcccccchhhcccC------------ccc
Confidence 9999987553 1 223455678999999999999887432 112389999987654322 334
Q ss_pred ChHHHHHHHHHHHHHHHHHH----hCCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceEecccHH
Q 012176 268 SLYAATKKAGEEIAHTYNHI----YGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYID 343 (469)
Q Consensus 268 ~~Y~~sK~~~E~~~~~~~~~----~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~ 343 (469)
..|+.+|.+.+.+++.++.+ +||++++|.||.|..+..........+.....+..|+. .+...+
T Consensus 145 ~~y~~sKaal~~l~r~lA~el~~~~gIrVN~V~pG~i~t~~~~~~~~~~~~~~~~~~~~pl~------------r~~~~~ 212 (241)
T PF13561_consen 145 SAYSASKAALEGLTRSLAKELAPKKGIRVNAVSPGPIETPMTERIPGNEEFLEELKKRIPLG------------RLGTPE 212 (241)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHGGHGTEEEEEEEESSBSSHHHHHHHTHHHHHHHHHHHSTTS------------SHBEHH
T ss_pred hhhHHHHHHHHHHHHHHHHHhccccCeeeeeecccceeccchhccccccchhhhhhhhhccC------------CCcCHH
Confidence 58999999999999988754 58999999999998753211111234444444444432 245689
Q ss_pred HHHHHHHHHhccCCCCCCCCCceEEEeCCC
Q 012176 344 DVVKGCVGATGSGGKKRGPAQLRVYNLGNT 373 (469)
Q Consensus 344 Dva~~~~~~~~~~~~~~~~~~~~iyni~~~ 373 (469)
|+|++++.++..... -..|+++.+.+|
T Consensus 213 evA~~v~fL~s~~a~---~itG~~i~vDGG 239 (241)
T PF13561_consen 213 EVANAVLFLASDAAS---YITGQVIPVDGG 239 (241)
T ss_dssp HHHHHHHHHHSGGGT---TGTSEEEEESTT
T ss_pred HHHHHHHHHhCcccc---CccCCeEEECCC
Confidence 999999998865422 345688888775
|
... |
| >PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.9e-14 Score=127.71 Aligned_cols=155 Identities=22% Similarity=0.192 Sum_probs=117.1
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCC-CcEEEEeCCCCCCChhHHHHHHHhh-ccCCeEEEEecCCCHHHHHHhhccC----
Q 012176 119 MTVLVTGAAGFVGSHCSLALKKRG-DGVLGLDNFNSYYDPSLKRARQKLL-QKHQVFIVEGDLNDAPLLTKLFDVV---- 192 (469)
Q Consensus 119 ~~VlVtGatG~IG~~l~~~L~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~v~~v~~Dl~d~~~l~~~~~~~---- 192 (469)
|+|+||||++.||..++++|+++| ..|+++.|+. ..+.......... ...++.++++|++|.++++++++.+
T Consensus 1 k~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~~--~~~~~~~l~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 78 (167)
T PF00106_consen 1 KTVLITGASSGIGRALARALARRGARVVILTSRSE--DSEGAQELIQELKAPGAKITFIECDLSDPESIRALIEEVIKRF 78 (167)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTTEEEEEEESSC--HHHHHHHHHHHHHHTTSEEEEEESETTSHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCceEEEEeeecc--ccccccccccccccccccccccccccccccccccccccccccc
Confidence 579999999999999999999995 5778888850 0111121111111 2358899999999999988888754
Q ss_pred -CccEEEEcccccChh----hhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcCccccCCCCCCCCCCCCCCCCCC
Q 012176 193 -PFTHVLHLAAQAGVR----YAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPA 267 (469)
Q Consensus 193 -~~d~Vih~Aa~~~~~----~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~ 267 (469)
++|+||||||..... ...+..+.++++|+.+...+.+++...+ .++||++||....-+. ...
T Consensus 79 ~~ld~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~-~g~iv~~sS~~~~~~~------------~~~ 145 (167)
T PF00106_consen 79 GPLDILINNAGIFSDGSLDDLSEEELERVFRVNLFGPFLLAKALLPQG-GGKIVNISSIAGVRGS------------PGM 145 (167)
T ss_dssp SSESEEEEECSCTTSBSGGGSHHHHHHHHHHHHTHHHHHHHHHHHHHT-TEEEEEEEEGGGTSSS------------TTB
T ss_pred ccccccccccccccccccccccchhhhhccccccceeeeeeehheecc-ccceEEecchhhccCC------------CCC
Confidence 689999999986532 1234456799999999999999988744 3499999997665322 345
Q ss_pred ChHHHHHHHHHHHHHHHHHHh
Q 012176 268 SLYAATKKAGEEIAHTYNHIY 288 (469)
Q Consensus 268 ~~Y~~sK~~~E~~~~~~~~~~ 288 (469)
..|+.+|.+.+.+++.++.++
T Consensus 146 ~~Y~askaal~~~~~~la~e~ 166 (167)
T PF00106_consen 146 SAYSASKAALRGLTQSLAAEL 166 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHhc
Confidence 689999999999999998873
|
As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A .... |
| >KOG1208 consensus Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.2e-13 Score=135.50 Aligned_cols=189 Identities=19% Similarity=0.140 Sum_probs=137.8
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccC---
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~--- 192 (469)
..+++++||||+.+||.+++++|+.+|..|+...|+.+...+..+.... ......+.++++|+.|.+++.++.+..
T Consensus 33 ~~~~~~vVTGansGIG~eta~~La~~Ga~Vv~~~R~~~~~~~~~~~i~~-~~~~~~i~~~~lDLssl~SV~~fa~~~~~~ 111 (314)
T KOG1208|consen 33 LSGKVALVTGATSGIGFETARELALRGAHVVLACRNEERGEEAKEQIQK-GKANQKIRVIQLDLSSLKSVRKFAEEFKKK 111 (314)
T ss_pred CCCcEEEEECCCCchHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHh-cCCCCceEEEECCCCCHHHHHHHHHHHHhc
Confidence 5678999999999999999999999999999999976433333332222 122447889999999999988887654
Q ss_pred --CccEEEEcccccChhh--hccChHHHHHHHHHHHHHHHHH----HHhcCCCCeEEEEcCccc-cCCCCCCCCCCCCCC
Q 012176 193 --PFTHVLHLAAQAGVRY--AMQNPQSYVASNIAGFVNLLEV----CKSVNPQPSIVWASSSSV-YGLNTQVPFSESHRT 263 (469)
Q Consensus 193 --~~d~Vih~Aa~~~~~~--~~~~~~~~~~~Nv~~~~~ll~a----a~~~~~~~~~V~~SS~~v-yg~~~~~~~~E~~~~ 263 (469)
+.|++|+|||...... ..+..+..+.+|..|...|.++ ++.... .|||++||... ........-.|....
T Consensus 112 ~~~ldvLInNAGV~~~~~~~t~DG~E~~~~tN~lg~flLt~lLlp~lk~s~~-~RIV~vsS~~~~~~~~~~~l~~~~~~~ 190 (314)
T KOG1208|consen 112 EGPLDVLINNAGVMAPPFSLTKDGLELTFATNYLGHFLLTELLLPLLKRSAP-SRIVNVSSILGGGKIDLKDLSGEKAKL 190 (314)
T ss_pred CCCccEEEeCcccccCCcccCccchhheehhhhHHHHHHHHHHHHHHhhCCC-CCEEEEcCccccCccchhhccchhccC
Confidence 6899999999866543 3456788999999997777665 454444 49999999664 111111111121111
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHh--CCcEEEEeecceecCCCC
Q 012176 264 DQPASLYAATKKAGEEIAHTYNHIY--GLALTGLRFFTVYGPWGR 306 (469)
Q Consensus 264 ~~p~~~Y~~sK~~~E~~~~~~~~~~--gi~~~ilRp~~v~Gp~~~ 306 (469)
......|+.||.+......++.+.+ |+.+..+.||.|.++...
T Consensus 191 ~~~~~~Y~~SKla~~l~~~eL~k~l~~~V~~~~~hPG~v~t~~l~ 235 (314)
T KOG1208|consen 191 YSSDAAYALSKLANVLLANELAKRLKKGVTTYSVHPGVVKTTGLS 235 (314)
T ss_pred ccchhHHHHhHHHHHHHHHHHHHHhhcCceEEEECCCccccccee
Confidence 1222359999999999999998765 699999999999887443
|
|
| >COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.5e-13 Score=120.98 Aligned_cols=169 Identities=17% Similarity=0.163 Sum_probs=126.5
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhh----cc
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLF----DV 191 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~----~~ 191 (469)
..+.+||||||+.+||..++++|.+.|.+|++..|+.. +......+.+.+....+|+.|.++.++++ +.
T Consensus 3 ~tgnTiLITGG~sGIGl~lak~f~elgN~VIi~gR~e~-------~L~e~~~~~p~~~t~v~Dv~d~~~~~~lvewLkk~ 75 (245)
T COG3967 3 TTGNTILITGGASGIGLALAKRFLELGNTVIICGRNEE-------RLAEAKAENPEIHTEVCDVADRDSRRELVEWLKKE 75 (245)
T ss_pred ccCcEEEEeCCcchhhHHHHHHHHHhCCEEEEecCcHH-------HHHHHHhcCcchheeeecccchhhHHHHHHHHHhh
Confidence 46789999999999999999999999999999999543 22222234568889999999998655444 33
Q ss_pred C-CccEEEEcccccCh------hhhccChHHHHHHHHHHHHHHHHHHHhc---CCCCeEEEEcCccccCCCCCCCCCCCC
Q 012176 192 V-PFTHVLHLAAQAGV------RYAMQNPQSYVASNIAGFVNLLEVCKSV---NPQPSIVWASSSSVYGLNTQVPFSESH 261 (469)
Q Consensus 192 ~-~~d~Vih~Aa~~~~------~~~~~~~~~~~~~Nv~~~~~ll~aa~~~---~~~~~~V~~SS~~vyg~~~~~~~~E~~ 261 (469)
. ..+++|||||.... +...++.+..+++|+.++..|..+...+ .....||.+||.-.|-+...
T Consensus 76 ~P~lNvliNNAGIqr~~dlt~~e~~~~~~~~eI~~Nl~API~Lt~~~lphl~~q~~a~IInVSSGLafvPm~~------- 148 (245)
T COG3967 76 YPNLNVLINNAGIQRNEDLTGAEDLLDDAEQEIATNLLAPIRLTALLLPHLLRQPEATIINVSSGLAFVPMAS------- 148 (245)
T ss_pred CCchheeeecccccchhhccCCcchhhHHHHHHHHhhhhHHHHHHHHHHHHHhCCCceEEEeccccccCcccc-------
Confidence 3 47999999997332 2223444567899999999998876543 22337999999877654322
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeecceecC
Q 012176 262 RTDQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGP 303 (469)
Q Consensus 262 ~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~Gp 303 (469)
.-.|+++|++...+...++++ .+++|.=+-|+.|-.+
T Consensus 149 -----~PvYcaTKAaiHsyt~aLR~Qlk~t~veVIE~~PP~V~t~ 188 (245)
T COG3967 149 -----TPVYCATKAAIHSYTLALREQLKDTSVEVIELAPPLVDTT 188 (245)
T ss_pred -----cccchhhHHHHHHHHHHHHHHhhhcceEEEEecCCceecC
Confidence 234999999999998888754 3788888888888764
|
|
| >COG1028 FabG Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=99.54 E-value=4.5e-13 Score=128.28 Aligned_cols=173 Identities=20% Similarity=0.177 Sum_probs=127.2
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCC-ChhHHHHHHHhhcc-CCeEEEEecCCC-HHHHHHhhccC
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYY-DPSLKRARQKLLQK-HQVFIVEGDLND-APLLTKLFDVV 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~-~~~~~~~~~~~~~~-~~v~~v~~Dl~d-~~~l~~~~~~~ 192 (469)
..+|+|+||||++.||..+++.|+++|+.|+++.|..... ......... ... ..+.....|+++ .+.++.+++..
T Consensus 3 ~~~~~ilITGas~GiG~aia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~Dvs~~~~~v~~~~~~~ 80 (251)
T COG1028 3 LSGKVALVTGASSGIGRAIARALAREGARVVVAARRSEEEAAEALAAAIK--EAGGGRAAAVAADVSDDEESVEALVAAA 80 (251)
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCeEEEEcCCCchhhHHHHHHHHH--hcCCCcEEEEEecCCCCHHHHHHHHHHH
Confidence 5678999999999999999999999999999888865432 111111111 111 367788899998 88877776543
Q ss_pred -----CccEEEEcccccCh-----hhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcCccccCCCCCCCCCCCCC
Q 012176 193 -----PFTHVLHLAAQAGV-----RYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHR 262 (469)
Q Consensus 193 -----~~d~Vih~Aa~~~~-----~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~ 262 (469)
++|++|||||.... ....+..+..+++|+.+...+.+++.....+.+||++||.... ..
T Consensus 81 ~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~Iv~isS~~~~-~~---------- 149 (251)
T COG1028 81 EEEFGRIDILVNNAGIAGPDAPLEELTEEDWDRVIDVNLLGAFLLTRAALPLMKKQRIVNISSVAGL-GG---------- 149 (251)
T ss_pred HHHcCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHhHHHHHHHHHHHHHhhhhCeEEEECCchhc-CC----------
Confidence 47999999997431 2233556689999999998888855433222289999997764 32
Q ss_pred CCCC-CChHHHHHHHHHHHHHHHHHH---hCCcEEEEeecceecC
Q 012176 263 TDQP-ASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGP 303 (469)
Q Consensus 263 ~~~p-~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~Gp 303 (469)
.+ ...|+.+|.+.+.+.+.++.+ +|++++.|.||.+-.+
T Consensus 150 --~~~~~~Y~~sK~al~~~~~~l~~e~~~~gi~v~~v~PG~~~t~ 192 (251)
T COG1028 150 --PPGQAAYAASKAALIGLTKALALELAPRGIRVNAVAPGYIDTP 192 (251)
T ss_pred --CCCcchHHHHHHHHHHHHHHHHHHHhhhCcEEEEEEeccCCCc
Confidence 22 368999999999999988855 5899999999965544
|
|
| >PRK12428 3-alpha-hydroxysteroid dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.3e-13 Score=131.48 Aligned_cols=208 Identities=13% Similarity=0.056 Sum_probs=140.5
Q ss_pred HHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccC--CccEEEEcccccChhhhcc
Q 012176 134 CSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--PFTHVLHLAAQAGVRYAMQ 211 (469)
Q Consensus 134 l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~--~~d~Vih~Aa~~~~~~~~~ 211 (469)
++++|+++|++|++++|..... . ...++.+|++|.++++++++.. ++|+||||||... ..
T Consensus 1 ~a~~l~~~G~~Vv~~~r~~~~~---------~-----~~~~~~~Dl~~~~~v~~~~~~~~~~iD~li~nAG~~~----~~ 62 (241)
T PRK12428 1 TARLLRFLGARVIGVDRREPGM---------T-----LDGFIQADLGDPASIDAAVAALPGRIDALFNIAGVPG----TA 62 (241)
T ss_pred ChHHHHhCCCEEEEEeCCcchh---------h-----hhHhhcccCCCHHHHHHHHHHhcCCCeEEEECCCCCC----CC
Confidence 4788999999999999965421 0 1346789999999999998864 6799999999743 24
Q ss_pred ChHHHHHHHHHHHHHHHHHHHhc-CCCCeEEEEcCccccCCCCCCCCCCC---------------CCCCCCCChHHHHHH
Q 012176 212 NPQSYVASNIAGFVNLLEVCKSV-NPQPSIVWASSSSVYGLNTQVPFSES---------------HRTDQPASLYAATKK 275 (469)
Q Consensus 212 ~~~~~~~~Nv~~~~~ll~aa~~~-~~~~~~V~~SS~~vyg~~~~~~~~E~---------------~~~~~p~~~Y~~sK~ 275 (469)
+.+..+++|+.++..+++++... ...++||++||.+.|+.....+..|. ..+..+...|+.+|.
T Consensus 63 ~~~~~~~vN~~~~~~l~~~~~~~~~~~g~Iv~isS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~ 142 (241)
T PRK12428 63 PVELVARVNFLGLRHLTEALLPRMAPGGAIVNVASLAGAEWPQRLELHKALAATASFDEGAAWLAAHPVALATGYQLSKE 142 (241)
T ss_pred CHHHhhhhchHHHHHHHHHHHHhccCCcEEEEeCcHHhhccccchHHHHhhhccchHHHHHHhhhccCCCcccHHHHHHH
Confidence 67889999999999999988653 11249999999988863322221111 012245678999999
Q ss_pred HHHHHHHHHH-HH---hCCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceEecccHHHHHHHHHH
Q 012176 276 AGEEIAHTYN-HI---YGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVG 351 (469)
Q Consensus 276 ~~E~~~~~~~-~~---~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~~~~~ 351 (469)
+.+.+.+.++ .+ +|+++++|+||.|.++...... ...-......... ....+...+|+|++++.
T Consensus 143 a~~~~~~~la~~e~~~~girvn~v~PG~v~T~~~~~~~--~~~~~~~~~~~~~----------~~~~~~~pe~va~~~~~ 210 (241)
T PRK12428 143 ALILWTMRQAQPWFGARGIRVNCVAPGPVFTPILGDFR--SMLGQERVDSDAK----------RMGRPATADEQAAVLVF 210 (241)
T ss_pred HHHHHHHHHHHHhhhccCeEEEEeecCCccCcccccch--hhhhhHhhhhccc----------ccCCCCCHHHHHHHHHH
Confidence 9999998888 43 4899999999999987432110 0000000000000 01125678999999999
Q ss_pred HhccCCCCCCCCCceEEEeCCCC
Q 012176 352 ATGSGGKKRGPAQLRVYNLGNTS 374 (469)
Q Consensus 352 ~~~~~~~~~~~~~~~iyni~~~~ 374 (469)
++..... ...|+++.+.++.
T Consensus 211 l~s~~~~---~~~G~~i~vdgg~ 230 (241)
T PRK12428 211 LCSDAAR---WINGVNLPVDGGL 230 (241)
T ss_pred HcChhhc---CccCcEEEecCch
Confidence 8754321 2345666666553
|
|
| >PRK06300 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.8e-12 Score=125.94 Aligned_cols=231 Identities=10% Similarity=-0.006 Sum_probs=139.6
Q ss_pred CCCCEEEEEcCC--ChhHHHHHHHHHHCCCcEEEEeCCC------CCCChh-HH--------------HHHHHhhccCCe
Q 012176 116 PNGMTVLVTGAA--GFVGSHCSLALKKRGDGVLGLDNFN------SYYDPS-LK--------------RARQKLLQKHQV 172 (469)
Q Consensus 116 ~~~~~VlVtGat--G~IG~~l~~~L~~~G~~V~~~~r~~------~~~~~~-~~--------------~~~~~~~~~~~v 172 (469)
.++|+++||||+ ..||+++++.|.++|++|++.++.. ...... .. +...-..+-...
T Consensus 6 ~~gk~alITGa~~~~GIG~a~A~~la~~Ga~Vvv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~d~~~~ 85 (299)
T PRK06300 6 LTGKIAFIAGIGDDQGYGWGIAKALAEAGATILVGTWVPIYKIFSQSLELGKFDASRKLSNGSLLTFAKIYPMDASFDTP 85 (299)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHCCCEEEEEeccchhhhhhhhcccccccccccccccchhhhhhHHHhhhhcCCC
Confidence 578999999995 8999999999999999999976531 000000 00 000000000112
Q ss_pred EEEEecCCC--------HHHHHHhhccC-----CccEEEEcccccC---h---hhhccChHHHHHHHHHHHHHHHHHHHh
Q 012176 173 FIVEGDLND--------APLLTKLFDVV-----PFTHVLHLAAQAG---V---RYAMQNPQSYVASNIAGFVNLLEVCKS 233 (469)
Q Consensus 173 ~~v~~Dl~d--------~~~l~~~~~~~-----~~d~Vih~Aa~~~---~---~~~~~~~~~~~~~Nv~~~~~ll~aa~~ 233 (469)
+-+..|+.+ .++++++++.+ ++|++|||||... . ..+.++.+..+++|+.+...+++++..
T Consensus 86 ~~v~~~i~~~~~~~~~~~~si~~~~~~v~~~~G~lDvLVnNAG~~~~~~~~~~~~~~e~~~~~~~vNl~g~~~l~~a~~p 165 (299)
T PRK06300 86 EDVPEEIRENKRYKDLSGYTISEVAEQVKKDFGHIDILVHSLANSPEISKPLLETSRKGYLAALSTSSYSFVSLLSHFGP 165 (299)
T ss_pred EEeecccCccccccCCCHHHHHHHHHHHHHHcCCCcEEEECCCcCcccCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 222222222 12345444432 5799999997532 1 223455678899999999999998764
Q ss_pred cC-CCCeEEEEcCccccCCCCCCCCCCCCCCCCCC-ChHHHHHHHHHHHHHHHHHHh----CCcEEEEeecceecCCCCC
Q 012176 234 VN-PQPSIVWASSSSVYGLNTQVPFSESHRTDQPA-SLYAATKKAGEEIAHTYNHIY----GLALTGLRFFTVYGPWGRP 307 (469)
Q Consensus 234 ~~-~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~-~~Y~~sK~~~E~~~~~~~~~~----gi~~~ilRp~~v~Gp~~~~ 307 (469)
.- .++++|++||....-.. ... ..|+.+|.+.+.+++.++.++ ||+++.|.||.+-.+....
T Consensus 166 ~m~~~G~ii~iss~~~~~~~------------p~~~~~Y~asKaAl~~lt~~la~el~~~~gIrVn~V~PG~v~T~~~~~ 233 (299)
T PRK06300 166 IMNPGGSTISLTYLASMRAV------------PGYGGGMSSAKAALESDTKVLAWEAGRRWGIRVNTISAGPLASRAGKA 233 (299)
T ss_pred HhhcCCeEEEEeehhhcCcC------------CCccHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEEEeCCccChhhhc
Confidence 32 22489999885543211 112 269999999999999998763 7999999999987763211
Q ss_pred CChHHHHHHHHHcCCceEEEeeCCCCcceEecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCC
Q 012176 308 DMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNT 373 (469)
Q Consensus 308 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~ 373 (469)
...............++ ..+...+|++.+++.++..... ...|+++.+.++
T Consensus 234 ~~~~~~~~~~~~~~~p~------------~r~~~peevA~~v~~L~s~~~~---~itG~~i~vdGG 284 (299)
T PRK06300 234 IGFIERMVDYYQDWAPL------------PEPMEAEQVGAAAAFLVSPLAS---AITGETLYVDHG 284 (299)
T ss_pred ccccHHHHHHHHhcCCC------------CCCcCHHHHHHHHHHHhCcccc---CCCCCEEEECCC
Confidence 00001111111111111 1245689999999888764322 234577777665
|
|
| >KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.52 E-value=3.1e-14 Score=127.19 Aligned_cols=167 Identities=16% Similarity=0.112 Sum_probs=126.7
Q ss_pred CCCCEEEEEcCC-ChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccC--
Q 012176 116 PNGMTVLVTGAA-GFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV-- 192 (469)
Q Consensus 116 ~~~~~VlVtGat-G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~-- 192 (469)
.+.++|||||++ |.||.+|+++|.++|+.|++..|.-++. ..+..+.++...+.|+++++++.++...+
T Consensus 5 ~~~k~VlItgcs~GGIG~ala~ef~~~G~~V~AtaR~~e~M--------~~L~~~~gl~~~kLDV~~~~~V~~v~~evr~ 76 (289)
T KOG1209|consen 5 SQPKKVLITGCSSGGIGYALAKEFARNGYLVYATARRLEPM--------AQLAIQFGLKPYKLDVSKPEEVVTVSGEVRA 76 (289)
T ss_pred cCCCeEEEeecCCcchhHHHHHHHHhCCeEEEEEccccchH--------hhHHHhhCCeeEEeccCChHHHHHHHHHHhh
Confidence 355789999876 9999999999999999999999955422 12222448999999999999987776543
Q ss_pred ----CccEEEEcccccCh----hhhccChHHHHHHHHHHHHHHHHHHHhc--CCCCeEEEEcCccccCCCCCCCCCCCCC
Q 012176 193 ----PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCKSV--NPQPSIVWASSSSVYGLNTQVPFSESHR 262 (469)
Q Consensus 193 ----~~d~Vih~Aa~~~~----~~~~~~~~~~~~~Nv~~~~~ll~aa~~~--~~~~~~V~~SS~~vyg~~~~~~~~E~~~ 262 (469)
+.|+++||||..-. +..-.+.+.++++|+.|..++.++.... ..++.||++.|..+|-+.
T Consensus 77 ~~~Gkld~L~NNAG~~C~~Pa~d~~i~ave~~f~vNvfG~irM~~a~~h~likaKGtIVnvgSl~~~vpf---------- 146 (289)
T KOG1209|consen 77 NPDGKLDLLYNNAGQSCTFPALDATIAAVEQCFKVNVFGHIRMCRALSHFLIKAKGTIVNVGSLAGVVPF---------- 146 (289)
T ss_pred CCCCceEEEEcCCCCCcccccccCCHHHHHhhhccceeeeehHHHHHHHHHHHccceEEEecceeEEecc----------
Confidence 67999999997332 1222344678999999999999886532 233489999998887532
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeecceec
Q 012176 263 TDQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYG 302 (469)
Q Consensus 263 ~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~G 302 (469)
.-.+.|.++|++...+.+.++-+ +|++++.+-+|.|-.
T Consensus 147 --pf~~iYsAsKAAihay~~tLrlEl~PFgv~Vin~itGGv~T 187 (289)
T KOG1209|consen 147 --PFGSIYSASKAAIHAYARTLRLELKPFGVRVINAITGGVAT 187 (289)
T ss_pred --chhhhhhHHHHHHHHhhhhcEEeeeccccEEEEecccceec
Confidence 33578999999999999888643 478888887777654
|
|
| >KOG1610 consensus Corticosteroid 11-beta-dehydrogenase and related short chain-type dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=99.52 E-value=5e-13 Score=127.17 Aligned_cols=189 Identities=14% Similarity=0.067 Sum_probs=133.8
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhcc----
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDV---- 191 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~---- 191 (469)
..+|-|+|||+....|..++++|.++|+.|.+....++ ..+.+. .....++...+..|++++++++++.+-
T Consensus 27 ~~~k~VlITGCDSGfG~~LA~~L~~~Gf~V~Agcl~~~-gae~L~----~~~~s~rl~t~~LDVT~~esi~~a~~~V~~~ 101 (322)
T KOG1610|consen 27 LSDKAVLITGCDSGFGRLLAKKLDKKGFRVFAGCLTEE-GAESLR----GETKSPRLRTLQLDVTKPESVKEAAQWVKKH 101 (322)
T ss_pred cCCcEEEEecCCcHHHHHHHHHHHhcCCEEEEEeecCc-hHHHHh----hhhcCCcceeEeeccCCHHHHHHHHHHHHHh
Confidence 56688999999999999999999999999999884332 112221 111266889999999999998877652
Q ss_pred ---CCccEEEEcccccChh----h-hccChHHHHHHHHHHHHHHHHHHHh--cCCCCeEEEEcCccccCCCCCCCCCCCC
Q 012176 192 ---VPFTHVLHLAAQAGVR----Y-AMQNPQSYVASNIAGFVNLLEVCKS--VNPQPSIVWASSSSVYGLNTQVPFSESH 261 (469)
Q Consensus 192 ---~~~d~Vih~Aa~~~~~----~-~~~~~~~~~~~Nv~~~~~ll~aa~~--~~~~~~~V~~SS~~vyg~~~~~~~~E~~ 261 (469)
.+.-.||||||..... + ..++.+.+.++|+.|+..+..+... ...++|+|++||...--+.
T Consensus 102 l~~~gLwglVNNAGi~~~~g~~ewl~~~d~~~~l~vNllG~irvT~~~lpLlr~arGRvVnvsS~~GR~~~--------- 172 (322)
T KOG1610|consen 102 LGEDGLWGLVNNAGISGFLGPDEWLTVEDYRKVLNVNLLGTIRVTKAFLPLLRRARGRVVNVSSVLGRVAL--------- 172 (322)
T ss_pred cccccceeEEeccccccccCccccccHHHHHHHHhhhhhhHHHHHHHHHHHHHhccCeEEEecccccCccC---------
Confidence 2567899999964321 1 2456678999999999998887532 1223499999996642111
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeecceecCCCCCCChHHHHHHHHHcCC
Q 012176 262 RTDQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGK 322 (469)
Q Consensus 262 ~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~ 322 (469)
+...+|+.||++.|.....++.| +|++|.+|-||. |-........+..-++.+...-
T Consensus 173 ---p~~g~Y~~SK~aVeaf~D~lR~EL~~fGV~VsiiePG~-f~T~l~~~~~~~~~~~~~w~~l 232 (322)
T KOG1610|consen 173 ---PALGPYCVSKFAVEAFSDSLRRELRPFGVKVSIIEPGF-FKTNLANPEKLEKRMKEIWERL 232 (322)
T ss_pred ---cccccchhhHHHHHHHHHHHHHHHHhcCcEEEEeccCc-cccccCChHHHHHHHHHHHhcC
Confidence 34578999999999998888866 699999999994 4432222222333444444443
|
|
| >KOG4288 consensus Predicted oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.2e-13 Score=124.80 Aligned_cols=223 Identities=15% Similarity=0.035 Sum_probs=160.5
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCccEEE
Q 012176 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTHVL 198 (469)
Q Consensus 119 ~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~d~Vi 198 (469)
..+++.|+.||.|.++++.....|+.|-++.|++.+ ...... ...+.+..+|....+-+...+.+. ..|+
T Consensus 53 e~tlvlggnpfsgs~vlk~A~~vv~svgilsen~~k------~~l~sw--~~~vswh~gnsfssn~~k~~l~g~--t~v~ 122 (283)
T KOG4288|consen 53 EWTLVLGGNPFSGSEVLKNATNVVHSVGILSENENK------QTLSSW--PTYVSWHRGNSFSSNPNKLKLSGP--TFVY 122 (283)
T ss_pred HHHhhhcCCCcchHHHHHHHHhhceeeeEeecccCc------chhhCC--CcccchhhccccccCcchhhhcCC--cccH
Confidence 457899999999999999999999999999986541 111111 236788888887777777777766 8899
Q ss_pred EcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcCccccCCCCCCCCCCCCCCCCCCChHHHHHHHHH
Q 012176 199 HLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGE 278 (469)
Q Consensus 199 h~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y~~sK~~~E 278 (469)
.+++..+ +...+.++|-....+.+.++.+.|++ +|+|+|.. -||.. +..| ..|-.+|+++|
T Consensus 123 e~~ggfg------n~~~m~~ing~ani~a~kaa~~~gv~-~fvyISa~-d~~~~----------~~i~-rGY~~gKR~AE 183 (283)
T KOG4288|consen 123 EMMGGFG------NIILMDRINGTANINAVKAAAKAGVP-RFVYISAH-DFGLP----------PLIP-RGYIEGKREAE 183 (283)
T ss_pred HHhcCcc------chHHHHHhccHhhHHHHHHHHHcCCc-eEEEEEhh-hcCCC----------Cccc-hhhhccchHHH
Confidence 9998754 55677889999999999999999997 99999953 23211 1133 37999999999
Q ss_pred HHHHHHHHHhCCcEEEEeecceecCCCCCCC-----hHHHHHHHHHcCCceEEEeeCCCCcceEecccHHHHHHHHHHHh
Q 012176 279 EIAHTYNHIYGLALTGLRFFTVYGPWGRPDM-----AYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGAT 353 (469)
Q Consensus 279 ~~~~~~~~~~gi~~~ilRp~~v~Gp~~~~~~-----~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~~~~~~~ 353 (469)
..+.. .++++-+++|||.|||.+.-... .+..-+.++.++.+-++...|--+......+.+++||.+.+.++
T Consensus 184 ~Ell~---~~~~rgiilRPGFiyg~R~v~g~~~pL~~vg~pl~~~~~~a~k~~~kLp~lg~l~~ppvnve~VA~aal~ai 260 (283)
T KOG4288|consen 184 AELLK---KFRFRGIILRPGFIYGTRNVGGIKSPLHTVGEPLEMVLKFALKPLNKLPLLGPLLAPPVNVESVALAALKAI 260 (283)
T ss_pred HHHHH---hcCCCceeeccceeecccccCcccccHHhhhhhHHHHHHhhhchhhcCcccccccCCCcCHHHHHHHHHHhc
Confidence 87766 45788899999999997432221 12233444444443111111122788899999999999999999
Q ss_pred ccCCCCCCCCCceEEEeCCCCcccHHHHHHHHHH
Q 012176 354 GSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILEN 387 (469)
Q Consensus 354 ~~~~~~~~~~~~~iyni~~~~~vt~~el~~~i~~ 387 (469)
+++. .. ..+++.||.+...+
T Consensus 261 ~dp~---------f~-----Gvv~i~eI~~~a~k 280 (283)
T KOG4288|consen 261 EDPD---------FK-----GVVTIEEIKKAAHK 280 (283)
T ss_pred cCCC---------cC-----ceeeHHHHHHHHHH
Confidence 9883 22 13777777766544
|
|
| >KOG4169 consensus 15-hydroxyprostaglandin dehydrogenase and related dehydrogenases [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.6e-13 Score=122.86 Aligned_cols=220 Identities=20% Similarity=0.162 Sum_probs=149.9
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccC---
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~--- 192 (469)
..+|++++|||.|.||..++++|+++|..+.+++-+.+. .......+.......+.++++|+++..+++++|+..
T Consensus 3 ~tGKna~vtggagGIGl~~sk~Ll~kgik~~~i~~~~En--~~a~akL~ai~p~~~v~F~~~DVt~~~~~~~~f~ki~~~ 80 (261)
T KOG4169|consen 3 LTGKNALVTGGAGGIGLATSKALLEKGIKVLVIDDSEEN--PEAIAKLQAINPSVSVIFIKCDVTNRGDLEAAFDKILAT 80 (261)
T ss_pred ccCceEEEecCCchhhHHHHHHHHHcCchheeehhhhhC--HHHHHHHhccCCCceEEEEEeccccHHHHHHHHHHHHHH
Confidence 468999999999999999999999999988877754432 111122233344568999999999999999888764
Q ss_pred --CccEEEEcccccChhhhccChHHHHHHHHHHHHHHHHHH----Hh--cCCCCeEEEEcCccccCCCCCCCCCCCCCCC
Q 012176 193 --PFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVC----KS--VNPQPSIVWASSSSVYGLNTQVPFSESHRTD 264 (469)
Q Consensus 193 --~~d~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa----~~--~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~ 264 (469)
.+|++||+||... +.+.+..+.+|+.|..+-..++ .+ .|..+-||++||.. |..+-
T Consensus 81 fg~iDIlINgAGi~~----dkd~e~Ti~vNLtgvin~T~~alpyMdk~~gG~GGiIvNmsSv~--GL~P~---------- 144 (261)
T KOG4169|consen 81 FGTIDILINGAGILD----DKDWERTINVNLTGVINGTQLALPYMDKKQGGKGGIIVNMSSVA--GLDPM---------- 144 (261)
T ss_pred hCceEEEEccccccc----chhHHHhhccchhhhhhhhhhhhhhhhhhcCCCCcEEEEecccc--ccCcc----------
Confidence 5799999999854 4788999999998876655544 22 24445899999944 43311
Q ss_pred CCCChHHHHHHHHHHHHHHHHH-----HhCCcEEEEeecceecCC---C---CCCChHHHHHHHHHcCCceEEEeeCCCC
Q 012176 265 QPASLYAATKKAGEEIAHTYNH-----IYGLALTGLRFFTVYGPW---G---RPDMAYFFFTKDILQGKTIDVYKTQDDR 333 (469)
Q Consensus 265 ~p~~~Y~~sK~~~E~~~~~~~~-----~~gi~~~ilRp~~v~Gp~---~---~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 333 (469)
.....|+++|...-...|+++. +.|+++..+|||.+--.- - .....+..-+...++..+
T Consensus 145 p~~pVY~AsKaGVvgFTRSla~~ayy~~sGV~~~avCPG~t~t~l~~~~~~~~~~~e~~~~~~~~l~~~~---------- 214 (261)
T KOG4169|consen 145 PVFPVYAASKAGVVGFTRSLADLAYYQRSGVRFNAVCPGFTRTDLAENIDASGGYLEYSDSIKEALERAP---------- 214 (261)
T ss_pred ccchhhhhcccceeeeehhhhhhhhHhhcCEEEEEECCCcchHHHHHHHHhcCCcccccHHHHHHHHHcc----------
Confidence 2235699999998888887553 349999999999853210 0 000011111222222222
Q ss_pred cceEecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCC
Q 012176 334 EVARDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTS 374 (469)
Q Consensus 334 ~~~~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~ 374 (469)
--...+|+..++.++|.+ .+|.+|-+..+.
T Consensus 215 -----~q~~~~~a~~~v~aiE~~------~NGaiw~v~~g~ 244 (261)
T KOG4169|consen 215 -----KQSPACCAINIVNAIEYP------KNGAIWKVDSGS 244 (261)
T ss_pred -----cCCHHHHHHHHHHHHhhc------cCCcEEEEecCc
Confidence 123578888899988874 234777776654
|
|
| >KOG1207 consensus Diacetyl reductase/L-xylulose reductase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.3e-13 Score=119.47 Aligned_cols=211 Identities=22% Similarity=0.250 Sum_probs=152.4
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccC-CeEEEEecCCCHHHHHHhhccC-C
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKH-QVFIVEGDLNDAPLLTKLFDVV-P 193 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~-~v~~v~~Dl~d~~~l~~~~~~~-~ 193 (469)
..|+.|++||+.-.||+.+++.|.+.|..|+++.|.+. .+.. -..+.+ -++.+.+|+.+.+.+.+++..+ .
T Consensus 5 laG~~vlvTgagaGIG~~~v~~La~aGA~ViAvaR~~a----~L~s---LV~e~p~~I~Pi~~Dls~wea~~~~l~~v~p 77 (245)
T KOG1207|consen 5 LAGVIVLVTGAGAGIGKEIVLSLAKAGAQVIAVARNEA----NLLS---LVKETPSLIIPIVGDLSAWEALFKLLVPVFP 77 (245)
T ss_pred ccceEEEeecccccccHHHHHHHHhcCCEEEEEecCHH----HHHH---HHhhCCcceeeeEecccHHHHHHHhhcccCc
Confidence 57899999999999999999999999999999999543 1111 111223 4899999999988888877654 6
Q ss_pred ccEEEEcccccCh----hhhccChHHHHHHHHHHHHHHHHH----HHhcCCCCeEEEEcCccccCCCCCCCCCCCCCCCC
Q 012176 194 FTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEV----CKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQ 265 (469)
Q Consensus 194 ~d~Vih~Aa~~~~----~~~~~~~~~~~~~Nv~~~~~ll~a----a~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~ 265 (469)
+|.++||||..-. ....++.+..|++|+.+..++.+. ....++++.||++||.+.-- + ..
T Consensus 78 idgLVNNAgvA~~~pf~eiT~q~fDr~F~VNvravi~v~Q~var~lv~R~~~GaIVNvSSqas~R-----~-------~~ 145 (245)
T KOG1207|consen 78 IDGLVNNAGVATNHPFGEITQQSFDRTFAVNVRAVILVAQLVARNLVDRQIKGAIVNVSSQASIR-----P-------LD 145 (245)
T ss_pred hhhhhccchhhhcchHHHHhHHhhcceeeeeeeeeeeHHHHHHHhhhhccCCceEEEecchhccc-----c-------cC
Confidence 7999999997322 234566678899999999888887 33456667899999965421 1 13
Q ss_pred CCChHHHHHHHHHHHHHHHHHHhC---CcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceEecccH
Q 012176 266 PASLYAATKKAGEEIAHTYNHIYG---LALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYI 342 (469)
Q Consensus 266 p~~~Y~~sK~~~E~~~~~~~~~~g---i~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v 342 (469)
..+.|+.+|.+...+.+.++-+.| |++..+.|..|...-+..+---+.--+.++..-|+ -.|.-|
T Consensus 146 nHtvYcatKaALDmlTk~lAlELGp~kIRVNsVNPTVVmT~MG~dnWSDP~K~k~mL~riPl------------~rFaEV 213 (245)
T KOG1207|consen 146 NHTVYCATKAALDMLTKCLALELGPQKIRVNSVNPTVVMTDMGRDNWSDPDKKKKMLDRIPL------------KRFAEV 213 (245)
T ss_pred CceEEeecHHHHHHHHHHHHHhhCcceeEeeccCCeEEEecccccccCCchhccchhhhCch------------hhhhHH
Confidence 457799999999999999987765 89999999998764322110001111122222222 247789
Q ss_pred HHHHHHHHHHhccCC
Q 012176 343 DDVVKGCVGATGSGG 357 (469)
Q Consensus 343 ~Dva~~~~~~~~~~~ 357 (469)
+.+++++..++....
T Consensus 214 ~eVVnA~lfLLSd~s 228 (245)
T KOG1207|consen 214 DEVVNAVLFLLSDNS 228 (245)
T ss_pred HHHHhhheeeeecCc
Confidence 999999999886553
|
|
| >KOG1203 consensus Predicted dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.3e-12 Score=128.63 Aligned_cols=214 Identities=21% Similarity=0.140 Sum_probs=131.7
Q ss_pred CCCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHH-HHHHhhccC
Q 012176 114 RRPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAP-LLTKLFDVV 192 (469)
Q Consensus 114 ~~~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~-~l~~~~~~~ 192 (469)
.+.+.++|+|+||||.+|+.+++.|+++|+.|+++.|+......... ......+...+..|...+. .+..+.+..
T Consensus 75 ~~~~~~~VlVvGatG~vG~~iv~~llkrgf~vra~VRd~~~a~~~~~----~~~~d~~~~~v~~~~~~~~d~~~~~~~~~ 150 (411)
T KOG1203|consen 75 NSKKPTTVLVVGATGKVGRRIVKILLKRGFSVRALVRDEQKAEDLLG----VFFVDLGLQNVEADVVTAIDILKKLVEAV 150 (411)
T ss_pred CCCCCCeEEEecCCCchhHHHHHHHHHCCCeeeeeccChhhhhhhhc----ccccccccceeeeccccccchhhhhhhhc
Confidence 34667899999999999999999999999999999996542221111 1122446666666665443 344444443
Q ss_pred C--ccEEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcCccccCCCCCCCCCCCCCCCCCCChH
Q 012176 193 P--FTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLY 270 (469)
Q Consensus 193 ~--~d~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y 270 (469)
. ..+|+-+++...... +-..-..+...|++|+++||+.+|++ |||++||++.-......+.. .-...+
T Consensus 151 ~~~~~~v~~~~ggrp~~e---d~~~p~~VD~~g~knlvdA~~~aGvk-~~vlv~si~~~~~~~~~~~~------~~~~~~ 220 (411)
T KOG1203|consen 151 PKGVVIVIKGAGGRPEEE---DIVTPEKVDYEGTKNLVDACKKAGVK-RVVLVGSIGGTKFNQPPNIL------LLNGLV 220 (411)
T ss_pred cccceeEEecccCCCCcc---cCCCcceecHHHHHHHHHHHHHhCCc-eEEEEEeecCcccCCCchhh------hhhhhh
Confidence 2 246666666533221 22233457889999999999999998 99999876653222110000 001234
Q ss_pred HHHHHHHHHHHHHHHHHhCCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceEecccHHHHHHHHH
Q 012176 271 AATKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCV 350 (469)
Q Consensus 271 ~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~~~~ 350 (469)
-.+|+.+|.++++ .|++.+|||++...-........ .....+-... .+..--.+.-.|+|+.++
T Consensus 221 ~~~k~~~e~~~~~----Sgl~ytiIR~g~~~~~~~~~~~~-------~~~~~~~~~~-----~~~~~~~i~r~~vael~~ 284 (411)
T KOG1203|consen 221 LKAKLKAEKFLQD----SGLPYTIIRPGGLEQDTGGQREV-------VVDDEKELLT-----VDGGAYSISRLDVAELVA 284 (411)
T ss_pred hHHHHhHHHHHHh----cCCCcEEEeccccccCCCCccee-------cccCcccccc-----ccccceeeehhhHHHHHH
Confidence 4777777776664 69999999999876543221000 0001111111 111113566789999999
Q ss_pred HHhccCC
Q 012176 351 GATGSGG 357 (469)
Q Consensus 351 ~~~~~~~ 357 (469)
.++.++.
T Consensus 285 ~all~~~ 291 (411)
T KOG1203|consen 285 KALLNEA 291 (411)
T ss_pred HHHhhhh
Confidence 9988774
|
|
| >KOG1611 consensus Predicted short chain-type dehydrogenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.41 E-value=4.8e-12 Score=114.74 Aligned_cols=175 Identities=18% Similarity=0.071 Sum_probs=120.2
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHC-CCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccC---
Q 012176 117 NGMTVLVTGAAGFVGSHCSLALKKR-GDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (469)
Q Consensus 117 ~~~~VlVtGatG~IG~~l~~~L~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~--- 192 (469)
+.+.|+||||+.+||.-|+++|++. |.++++..+.+.... .++.......++++++++.|+++.++++++++++
T Consensus 2 spksv~ItGaNRGIGlgLVk~llk~~~i~~iiat~r~~e~a--~~~l~~k~~~d~rvHii~Ldvt~deS~~~~~~~V~~i 79 (249)
T KOG1611|consen 2 SPKSVFITGANRGIGLGLVKELLKDKGIEVIIATARDPEKA--ATELALKSKSDSRVHIIQLDVTCDESIDNFVQEVEKI 79 (249)
T ss_pred CCccEEEeccCcchhHHHHHHHhcCCCcEEEEEecCChHHh--hHHHHHhhccCCceEEEEEecccHHHHHHHHHHHHhh
Confidence 3466999999999999999999986 677776666432110 1111111223679999999999998877776644
Q ss_pred ----CccEEEEcccccChhhhc-----cChHHHHHHHHHHHHHHHHHH----HhcCC----------CCeEEEEcCcccc
Q 012176 193 ----PFTHVLHLAAQAGVRYAM-----QNPQSYVASNIAGFVNLLEVC----KSVNP----------QPSIVWASSSSVY 249 (469)
Q Consensus 193 ----~~d~Vih~Aa~~~~~~~~-----~~~~~~~~~Nv~~~~~ll~aa----~~~~~----------~~~~V~~SS~~vy 249 (469)
+.|++++|||....-... ....+.+++|..++.-+.+++ +++.. +..||++||.+.-
T Consensus 80 Vg~~GlnlLinNaGi~~~y~~~~~~~r~~~~~~~~tN~v~~il~~Q~~lPLLkkaas~~~gd~~s~~raaIinisS~~~s 159 (249)
T KOG1611|consen 80 VGSDGLNLLINNAGIALSYNTVLKPSRAVLLEQYETNAVGPILLTQAFLPLLKKAASKVSGDGLSVSRAAIINISSSAGS 159 (249)
T ss_pred cccCCceEEEeccceeeecccccCCcHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhcccCCcccccceeEEEeeccccc
Confidence 679999999974332221 123467899988877666653 22111 1269999985432
Q ss_pred -CCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeecceecC
Q 012176 250 -GLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGP 303 (469)
Q Consensus 250 -g~~~~~~~~E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~Gp 303 (469)
+.. ...+...|..||.+.....+++.-+ .++-++.++||+|-..
T Consensus 160 ~~~~----------~~~~~~AYrmSKaAlN~f~ksls~dL~~~~ilv~sihPGwV~TD 207 (249)
T KOG1611|consen 160 IGGF----------RPGGLSAYRMSKAALNMFAKSLSVDLKDDHILVVSIHPGWVQTD 207 (249)
T ss_pred cCCC----------CCcchhhhHhhHHHHHHHHHHhhhhhcCCcEEEEEecCCeEEcC
Confidence 111 1156788999999999999998744 3688999999998553
|
|
| >PF08659 KR: KR domain; InterPro: IPR013968 This domain is found in bacterial polyketide synthases that catalyse the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain | Back alignment and domain information |
|---|
Probab=99.40 E-value=1e-11 Score=113.13 Aligned_cols=164 Identities=22% Similarity=0.225 Sum_probs=114.0
Q ss_pred EEEEEcCCChhHHHHHHHHHHCCC-cEEEEeCCCCCCChhHHHHHHHhh-ccCCeEEEEecCCCHHHHHHhhccC-----
Q 012176 120 TVLVTGAAGFVGSHCSLALKKRGD-GVLGLDNFNSYYDPSLKRARQKLL-QKHQVFIVEGDLNDAPLLTKLFDVV----- 192 (469)
Q Consensus 120 ~VlVtGatG~IG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~-~~~~v~~v~~Dl~d~~~l~~~~~~~----- 192 (469)
+++||||+|.||..+++.|.++|. +|+++.|......+.. ....... ....++++.+|++|++++.++++..
T Consensus 2 tylitGG~gglg~~la~~La~~~~~~~il~~r~~~~~~~~~-~~i~~l~~~g~~v~~~~~Dv~d~~~v~~~~~~~~~~~~ 80 (181)
T PF08659_consen 2 TYLITGGLGGLGQSLARWLAERGARRLILLGRSGAPSAEAE-AAIRELESAGARVEYVQCDVTDPEAVAAALAQLRQRFG 80 (181)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTT-SEEEEEESSGGGSTTHH-HHHHHHHHTT-EEEEEE--TTSHHHHHHHHHTSHTTSS
T ss_pred EEEEECCccHHHHHHHHHHHHcCCCEEEEeccCCCccHHHH-HHHHHHHhCCCceeeeccCccCHHHHHHHHHHHHhccC
Confidence 589999999999999999999975 7899998732111111 1111111 2447899999999999999999875
Q ss_pred CccEEEEcccccChh----hhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcCcc-ccCCCCCCCCCCCCCCCCCC
Q 012176 193 PFTHVLHLAAQAGVR----YAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSS-VYGLNTQVPFSESHRTDQPA 267 (469)
Q Consensus 193 ~~d~Vih~Aa~~~~~----~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS~~-vyg~~~~~~~~E~~~~~~p~ 267 (469)
+++.|||+|+..... .+++.....+..-+.|+.+|.++....... .||.+||.+ ++|. ..+
T Consensus 81 ~i~gVih~ag~~~~~~~~~~t~~~~~~~~~~Kv~g~~~L~~~~~~~~l~-~~i~~SSis~~~G~-------------~gq 146 (181)
T PF08659_consen 81 PIDGVIHAAGVLADAPIQDQTPDEFDAVLAPKVRGLWNLHEALENRPLD-FFILFSSISSLLGG-------------PGQ 146 (181)
T ss_dssp -EEEEEE-------B-GCC--HHHHHHHHHHHHHHHHHHHHHHTTTTTS-EEEEEEEHHHHTT--------------TTB
T ss_pred CcceeeeeeeeecccccccCCHHHHHHHHhhhhhHHHHHHHHhhcCCCC-eEEEECChhHhccC-------------cch
Confidence 678999999974322 122334567888899999999999887776 899999964 5553 345
Q ss_pred ChHHHHHHHHHHHHHHHHHHhCCcEEEEeecc
Q 012176 268 SLYAATKKAGEEIAHTYNHIYGLALTGLRFFT 299 (469)
Q Consensus 268 ~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~ 299 (469)
..|+.+-...+.+++.... .|.+++.|..+.
T Consensus 147 ~~YaaAN~~lda~a~~~~~-~g~~~~sI~wg~ 177 (181)
T PF08659_consen 147 SAYAAANAFLDALARQRRS-RGLPAVSINWGA 177 (181)
T ss_dssp HHHHHHHHHHHHHHHHHHH-TTSEEEEEEE-E
T ss_pred HhHHHHHHHHHHHHHHHHh-CCCCEEEEEccc
Confidence 7899999999988887665 489988887654
|
It uses NADPH to reduce the keto group to a hydroxy group. ; PDB: 3QP9_D 2FR0_A 2FR1_A 2Z5L_A 3SLK_B 3MJE_B 3MJC_A 3MJT_B 3MJV_A 3MJS_B .... |
| >KOG1210 consensus Predicted 3-ketosphinganine reductase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.40 E-value=8.5e-12 Score=118.60 Aligned_cols=207 Identities=19% Similarity=0.157 Sum_probs=146.8
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccC---CeEEEEecCCCHHHHHHhhccC---
Q 012176 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKH---QVFIVEGDLNDAPLLTKLFDVV--- 192 (469)
Q Consensus 119 ~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~---~v~~v~~Dl~d~~~l~~~~~~~--- 192 (469)
.+|+||||+..||..++.++..+|++|+++.|+... +.+..+.+.... .|.+..+|+.|.+++.+++++.
T Consensus 34 ~hi~itggS~glgl~la~e~~~~ga~Vti~ar~~~k----l~~a~~~l~l~~~~~~v~~~S~d~~~Y~~v~~~~~~l~~~ 109 (331)
T KOG1210|consen 34 RHILITGGSSGLGLALALECKREGADVTITARSGKK----LLEAKAELELLTQVEDVSYKSVDVIDYDSVSKVIEELRDL 109 (331)
T ss_pred ceEEEecCcchhhHHHHHHHHHccCceEEEeccHHH----HHHHHhhhhhhhccceeeEeccccccHHHHHHHHhhhhhc
Confidence 579999999999999999999999999999996542 222222222122 3668999999999999999887
Q ss_pred --CccEEEEcccccChhhhcc----ChHHHHHHHHHHHHHHHHHHHhc----CCCCeEEEEcCccc-cCCCCCCCCCCCC
Q 012176 193 --PFTHVLHLAAQAGVRYAMQ----NPQSYVASNIAGFVNLLEVCKSV----NPQPSIVWASSSSV-YGLNTQVPFSESH 261 (469)
Q Consensus 193 --~~d~Vih~Aa~~~~~~~~~----~~~~~~~~Nv~~~~~ll~aa~~~----~~~~~~V~~SS~~v-yg~~~~~~~~E~~ 261 (469)
.+|.+|||||..-+...++ ..+..+++|..|+.+++.++... ...++|+.+||... ++
T Consensus 110 ~~~~d~l~~cAG~~v~g~f~~~s~~~v~~~m~vNylgt~~v~~~~~~~mk~~~~~g~I~~vsS~~a~~~----------- 178 (331)
T KOG1210|consen 110 EGPIDNLFCCAGVAVPGLFEDLSPEVVEKLMDVNYLGTVNVAKAAARAMKKREHLGRIILVSSQLAMLG----------- 178 (331)
T ss_pred cCCcceEEEecCcccccccccCCHHHHHHHHHhhhhhhHHHHHHHHHHhhccccCcEEEEehhhhhhcC-----------
Confidence 6999999999855443333 33468899999999999875432 21227888888543 32
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceEe
Q 012176 262 RTDQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARD 338 (469)
Q Consensus 262 ~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 338 (469)
....+.|..+|.+...++..+.+| +|+.++..-|+.+-.|+..... ..+-....+. +...+
T Consensus 179 --i~GysaYs~sK~alrgLa~~l~qE~i~~~v~Vt~~~P~~~~tpGfE~En--------~tkP~~t~ii------~g~ss 242 (331)
T KOG1210|consen 179 --IYGYSAYSPSKFALRGLAEALRQELIKYGVHVTLYYPPDTLTPGFEREN--------KTKPEETKII------EGGSS 242 (331)
T ss_pred --cccccccccHHHHHHHHHHHHHHHHhhcceEEEEEcCCCCCCCcccccc--------ccCchheeee------cCCCC
Confidence 145677999999888887777755 5899999999998888543211 0111111222 11223
Q ss_pred cccHHHHHHHHHHHhccC
Q 012176 339 FTYIDDVVKGCVGATGSG 356 (469)
Q Consensus 339 ~v~v~Dva~~~~~~~~~~ 356 (469)
.+..+++|++++.-+.+.
T Consensus 243 ~~~~e~~a~~~~~~~~rg 260 (331)
T KOG1210|consen 243 VIKCEEMAKAIVKGMKRG 260 (331)
T ss_pred CcCHHHHHHHHHhHHhhc
Confidence 477899999999877653
|
|
| >TIGR02813 omega_3_PfaA polyketide-type polyunsaturated fatty acid synthase PfaA | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.9e-11 Score=146.85 Aligned_cols=174 Identities=17% Similarity=0.150 Sum_probs=131.2
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHC-CCcEEEEeCCCCCC---------C-hhHH-------------------------
Q 012176 117 NGMTVLVTGAAGFVGSHCSLALKKR-GDGVLGLDNFNSYY---------D-PSLK------------------------- 160 (469)
Q Consensus 117 ~~~~VlVtGatG~IG~~l~~~L~~~-G~~V~~~~r~~~~~---------~-~~~~------------------------- 160 (469)
++++||||||+|.||..++++|+++ |.+|++++|+.... + ..++
T Consensus 1996 ~g~vvLVTGGarGIG~aiA~~LA~~~ga~viL~gRs~~~~~~p~~a~~~~~~~lk~~~~~~l~~~g~~~~P~~i~~~~~~ 2075 (2582)
T TIGR02813 1996 SDDVFLVTGGAKGVTFECALELAKQCQAHFILAGRSSFDDNEPSWAQGKDENELKKAAIQHLQASGEKPTPKKVDALVRP 2075 (2582)
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHhcCCEEEEEeCCcccccCchhhhccchHHHHHhhhhhhhhcccccccchhhhcccc
Confidence 5789999999999999999999998 69999999972100 0 0000
Q ss_pred --------HHHHHhh-ccCCeEEEEecCCCHHHHHHhhccC----CccEEEEcccccCh----hhhccChHHHHHHHHHH
Q 012176 161 --------RARQKLL-QKHQVFIVEGDLNDAPLLTKLFDVV----PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAG 223 (469)
Q Consensus 161 --------~~~~~~~-~~~~v~~v~~Dl~d~~~l~~~~~~~----~~d~Vih~Aa~~~~----~~~~~~~~~~~~~Nv~~ 223 (469)
....... ....+.++.+|++|.+.++++++.+ ++|+||||||.... ..+.++.+..+++|+.|
T Consensus 2076 ~~~~~ei~~~la~l~~~G~~v~y~~~DVtD~~av~~av~~v~~~g~IDgVVhnAGv~~~~~i~~~t~e~f~~v~~~nv~G 2155 (2582)
T TIGR02813 2076 VLSSLEIAQALAAFKAAGASAEYASADVTNSVSVAATVQPLNKTLQITGIIHGAGVLADKHIQDKTLEEFNAVYGTKVDG 2155 (2582)
T ss_pred cchhHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHhCCCcEEEECCccCCCCCcccCCHHHHHHHHHHHHHH
Confidence 0000111 1236889999999999988888754 58999999997432 22345566899999999
Q ss_pred HHHHHHHHHhcCCCCeEEEEcCccccCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHh-CCcEEEEeecceec
Q 012176 224 FVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIY-GLALTGLRFFTVYG 302 (469)
Q Consensus 224 ~~~ll~aa~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~-gi~~~ilRp~~v~G 302 (469)
+.++++++.....+ +||++||...+-+. .....|+.+|...+.+.+.++.++ +++++.|.+|.+-|
T Consensus 2156 ~~~Ll~al~~~~~~-~IV~~SSvag~~G~------------~gqs~YaaAkaaL~~la~~la~~~~~irV~sI~wG~wdt 2222 (2582)
T TIGR02813 2156 LLSLLAALNAENIK-LLALFSSAAGFYGN------------TGQSDYAMSNDILNKAALQLKALNPSAKVMSFNWGPWDG 2222 (2582)
T ss_pred HHHHHHHHHHhCCC-eEEEEechhhcCCC------------CCcHHHHHHHHHHHHHHHHHHHHcCCcEEEEEECCeecC
Confidence 99999998876655 89999996543222 235679999999999999888775 68999999998866
Q ss_pred C
Q 012176 303 P 303 (469)
Q Consensus 303 p 303 (469)
+
T Consensus 2223 g 2223 (2582)
T TIGR02813 2223 G 2223 (2582)
T ss_pred C
Confidence 5
|
Members of the seed for this alignment are involved in omega-3 polyunsaturated fatty acid biosynthesis, such as the protein PfaA from the eicosapentaenoic acid biosynthesis operon in Photobacterium profundum strain SS9. PfaA is encoded together with PfaB, PfaC, and PfaD, and the functions of the individual polypeptides have not yet been described. More distant homologs of PfaA, also included with the reach of this model, appear to be involved in polyketide-like biosynthetic mechanisms of polyunsaturated fatty acid biosynthesis, an alternative to the more familiar iterated mechanism of chain extension and desaturation, and in most cases are encoded near genes for homologs of PfaB, PfaC, and/or PfaD. |
| >KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.2e-10 Score=110.96 Aligned_cols=169 Identities=18% Similarity=0.141 Sum_probs=126.1
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccC--CeEEEEecCCCHHH----HHHhhccC
Q 012176 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKH--QVFIVEGDLNDAPL----LTKLFDVV 192 (469)
Q Consensus 119 ~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~--~v~~v~~Dl~d~~~----l~~~~~~~ 192 (469)
.=..|||||..||+..+++|+++|.+|+++.|..+ .+.+..++..+.. .++++..|.++.+. +.+.+.+.
T Consensus 50 ~WAVVTGaTDGIGKayA~eLAkrG~nvvLIsRt~~----KL~~v~kEI~~~~~vev~~i~~Dft~~~~~ye~i~~~l~~~ 125 (312)
T KOG1014|consen 50 SWAVVTGATDGIGKAYARELAKRGFNVVLISRTQE----KLEAVAKEIEEKYKVEVRIIAIDFTKGDEVYEKLLEKLAGL 125 (312)
T ss_pred CEEEEECCCCcchHHHHHHHHHcCCEEEEEeCCHH----HHHHHHHHHHHHhCcEEEEEEEecCCCchhHHHHHHHhcCC
Confidence 55799999999999999999999999999999765 4445555555544 48888899987654 66777777
Q ss_pred CccEEEEcccccC--hhhhcc----ChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEEcCccccCCCCCCCCCCCCC
Q 012176 193 PFTHVLHLAAQAG--VRYAMQ----NPQSYVASNIAGFVNLLEVCK----SVNPQPSIVWASSSSVYGLNTQVPFSESHR 262 (469)
Q Consensus 193 ~~d~Vih~Aa~~~--~~~~~~----~~~~~~~~Nv~~~~~ll~aa~----~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~ 262 (469)
.+.++|||+|... +....+ ..+.++.+|+.++..+.+... +.+. +.||++||.+.--+.
T Consensus 126 ~VgILVNNvG~~~~~P~~f~~~~~~~~~~ii~vN~~~~~~~t~~ilp~M~~r~~-G~IvnigS~ag~~p~---------- 194 (312)
T KOG1014|consen 126 DVGILVNNVGMSYDYPESFLKYPEGELQNIINVNILSVTLLTQLILPGMVERKK-GIIVNIGSFAGLIPT---------- 194 (312)
T ss_pred ceEEEEecccccCCCcHHHHhCchhhhhheeEEecchHHHHHHHhhhhhhcCCC-ceEEEeccccccccC----------
Confidence 7889999999854 322222 224567788888777777643 2232 489999996543211
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCC
Q 012176 263 TDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPW 304 (469)
Q Consensus 263 ~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~ 304 (469)
+-.+.|+++|...+.....+.+|| ||.+-.+-|..|-++.
T Consensus 195 --p~~s~ysasK~~v~~~S~~L~~Ey~~~gI~Vq~v~p~~VaTkm 237 (312)
T KOG1014|consen 195 --PLLSVYSASKAFVDFFSRCLQKEYESKGIFVQSVIPYLVATKM 237 (312)
T ss_pred --hhHHHHHHHHHHHHHHHHHHHHHHHhcCeEEEEeehhheeccc
Confidence 345789999999888888777765 8999999999988863
|
|
| >KOG1199 consensus Short-chain alcohol dehydrogenase/3-hydroxyacyl-CoA dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.22 E-value=3.1e-11 Score=104.56 Aligned_cols=221 Identities=16% Similarity=0.099 Sum_probs=150.0
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccC---
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~--- 192 (469)
.++...+||||...+|...++.|.++|..|.+++...+......+ . -..++.+...|+++++++..++..+
T Consensus 7 ~kglvalvtggasglg~ataerlakqgasv~lldlp~skg~~vak-----e-lg~~~vf~padvtsekdv~aala~ak~k 80 (260)
T KOG1199|consen 7 TKGLVALVTGGASGLGKATAERLAKQGASVALLDLPQSKGADVAK-----E-LGGKVVFTPADVTSEKDVRAALAKAKAK 80 (260)
T ss_pred hcCeeEEeecCcccccHHHHHHHHhcCceEEEEeCCcccchHHHH-----H-hCCceEEeccccCcHHHHHHHHHHHHhh
Confidence 567789999999999999999999999999999986653322211 1 1347899999999999999888654
Q ss_pred --CccEEEEcccccCh----------hhhccChHHHHHHHHHHHHHHHHHHH-hc--------CCCCeEEEEcCccccCC
Q 012176 193 --PFTHVLHLAAQAGV----------RYAMQNPQSYVASNIAGFVNLLEVCK-SV--------NPQPSIVWASSSSVYGL 251 (469)
Q Consensus 193 --~~d~Vih~Aa~~~~----------~~~~~~~~~~~~~Nv~~~~~ll~aa~-~~--------~~~~~~V~~SS~~vyg~ 251 (469)
+.|+.+||||.... ....++.++.+++|+.||.|+++... .+ |-++-+|++.|.+.|.+
T Consensus 81 fgrld~~vncagia~a~ktyn~~k~~~h~ledfqrvidvn~~gtfnvirl~aglmg~nepdq~gqrgviintasvaafdg 160 (260)
T KOG1199|consen 81 FGRLDALVNCAGIAYAFKTYNVQKKKHHDLEDFQRVIDVNVLGTFNVIRLGAGLMGENEPDQNGQRGVIINTASVAAFDG 160 (260)
T ss_pred ccceeeeeeccceeeeeeeeeecccccccHHHhhheeeeeeeeeeeeeeehhhhhcCCCCCCCCcceEEEeeceeeeecC
Confidence 57999999997321 12345566788999999999998632 11 22235888888888765
Q ss_pred CCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEe
Q 012176 252 NTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYK 328 (469)
Q Consensus 252 ~~~~~~~E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~ 328 (469)
. ..+..|.++|.+.-.+..-.++. -||++..+.||.+-.|-... ++.-++..+.. .++.+.
T Consensus 161 q------------~gqaaysaskgaivgmtlpiardla~~gir~~tiapglf~tpllss---lpekv~~fla~-~ipfps 224 (260)
T KOG1199|consen 161 Q------------TGQAAYSASKGAIVGMTLPIARDLAGDGIRFNTIAPGLFDTPLLSS---LPEKVKSFLAQ-LIPFPS 224 (260)
T ss_pred c------------cchhhhhcccCceEeeechhhhhcccCceEEEeecccccCChhhhh---hhHHHHHHHHH-hCCCch
Confidence 4 34678999999876665544433 27899888888765553221 12222222221 122221
Q ss_pred eCCCCcceEecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCC
Q 012176 329 TQDDREVARDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGN 372 (469)
Q Consensus 329 ~~~~~~~~~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~ 372 (469)
..-|..+.+..+-.+++++ -.+|+++-+.+
T Consensus 225 ---------rlg~p~eyahlvqaiienp-----~lngevir~dg 254 (260)
T KOG1199|consen 225 ---------RLGHPHEYAHLVQAIIENP-----YLNGEVIRFDG 254 (260)
T ss_pred ---------hcCChHHHHHHHHHHHhCc-----ccCCeEEEecc
Confidence 2345677777777788887 33446665543
|
|
| >KOG4039 consensus Serine/threonine kinase TIP30/CC3 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.08 E-value=5.4e-10 Score=97.37 Aligned_cols=157 Identities=17% Similarity=0.106 Sum_probs=119.7
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCC--cEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCC
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGD--GVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVP 193 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~ 193 (469)
+.+|.++|.||||-.|+.+++.+++.+- +|+++.|.+.+ ++ .....+..+..|....+++...+.+.
T Consensus 16 mq~~s~fvlGAtG~~G~~llk~~~E~~~FSKV~~i~RR~~~-d~---------at~k~v~q~~vDf~Kl~~~a~~~qg~- 84 (238)
T KOG4039|consen 16 MQNMSGFVLGATGLCGGGLLKHAQEAPQFSKVYAILRRELP-DP---------ATDKVVAQVEVDFSKLSQLATNEQGP- 84 (238)
T ss_pred hhccceEEEeccccccHHHHHHHHhcccceeEEEEEeccCC-Cc---------cccceeeeEEechHHHHHHHhhhcCC-
Confidence 6778999999999999999999999974 89999985421 11 11236777788877777777777776
Q ss_pred ccEEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcCccccCCCCCCCCCCCCCCCCCCChHHHH
Q 012176 194 FTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAAT 273 (469)
Q Consensus 194 ~d~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y~~s 273 (469)
|+.+.+.|..... ...+..++++-+-+..+.++|++.|++ +|+.+||.++-. ...-.|-..
T Consensus 85 -dV~FcaLgTTRgk---aGadgfykvDhDyvl~~A~~AKe~Gck-~fvLvSS~GAd~--------------sSrFlY~k~ 145 (238)
T KOG4039|consen 85 -DVLFCALGTTRGK---AGADGFYKVDHDYVLQLAQAAKEKGCK-TFVLVSSAGADP--------------SSRFLYMKM 145 (238)
T ss_pred -ceEEEeecccccc---cccCceEeechHHHHHHHHHHHhCCCe-EEEEEeccCCCc--------------ccceeeeec
Confidence 9999998863221 223344555666678899999999998 999999987631 345679999
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEeecceecCCC
Q 012176 274 KKAGEEIAHTYNHIYGLALTGLRFFTVYGPWG 305 (469)
Q Consensus 274 K~~~E~~~~~~~~~~gi~~~ilRp~~v~Gp~~ 305 (469)
|...|.-+.++.= =+++|+|||.+.|.+.
T Consensus 146 KGEvE~~v~eL~F---~~~~i~RPG~ll~~R~ 174 (238)
T KOG4039|consen 146 KGEVERDVIELDF---KHIIILRPGPLLGERT 174 (238)
T ss_pred cchhhhhhhhccc---cEEEEecCcceecccc
Confidence 9999998888652 2689999999999644
|
|
| >KOG1204 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.6e-09 Score=98.50 Aligned_cols=169 Identities=17% Similarity=0.107 Sum_probs=113.5
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEe--CCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccC--
Q 012176 117 NGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLD--NFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV-- 192 (469)
Q Consensus 117 ~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~--r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~-- 192 (469)
.++.+||||++..||..+++.+.+++.+..... |.... .+.++. . -........+|+++...++++++..
T Consensus 5 ~r~villTGaSrgiG~~~v~~i~aed~e~~r~g~~r~~a~-~~~L~v---~--~gd~~v~~~g~~~e~~~l~al~e~~r~ 78 (253)
T KOG1204|consen 5 MRKVILLTGASRGIGTGSVATILAEDDEALRYGVARLLAE-LEGLKV---A--YGDDFVHVVGDITEEQLLGALREAPRK 78 (253)
T ss_pred cceEEEEecCCCCccHHHHHHHHhcchHHHHHhhhccccc-ccceEE---E--ecCCcceechHHHHHHHHHHHHhhhhh
Confidence 357899999999999999999999887654333 21111 000000 0 0012233445555555555555422
Q ss_pred ---CccEEEEcccccChh-------hhccChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEEcCccccCCCCCCCCC
Q 012176 193 ---PFTHVLHLAAQAGVR-------YAMQNPQSYVASNIAGFVNLLEVCKS----VNPQPSIVWASSSSVYGLNTQVPFS 258 (469)
Q Consensus 193 ---~~d~Vih~Aa~~~~~-------~~~~~~~~~~~~Nv~~~~~ll~aa~~----~~~~~~~V~~SS~~vyg~~~~~~~~ 258 (469)
+-|+||||||..+.. ...+.++.++++|+.....|...+.. ..+.+-+|++||.+..-
T Consensus 79 k~gkr~iiI~NAG~lgdvsk~~~~~~D~~qw~ky~~~NlfS~VsL~~~~l~~lk~~p~~~~vVnvSS~aav~-------- 150 (253)
T KOG1204|consen 79 KGGKRDIIIHNAGSLGDVSKGAVDLGDSDQWKKYWDLNLFSMVSLVQWALPKLKKSPVNGNVVNVSSLAAVR-------- 150 (253)
T ss_pred cCCceeEEEecCCCccchhhccCCcccHHHHHHHHHhhhhhHHhhHHHHHHHhcCCCccCeEEEecchhhhc--------
Confidence 579999999985432 12334568999999999888887643 22234799999965432
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHHH-h-CCcEEEEeecceecC
Q 012176 259 ESHRTDQPASLYAATKKAGEEIAHTYNHI-Y-GLALTGLRFFTVYGP 303 (469)
Q Consensus 259 E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~-~-gi~~~ilRp~~v~Gp 303 (469)
+...+..|+.+|++.+.+++.++.+ + ++.+..++||.|-.+
T Consensus 151 ----p~~~wa~yc~~KaAr~m~f~~lA~EEp~~v~vl~~aPGvvDT~ 193 (253)
T KOG1204|consen 151 ----PFSSWAAYCSSKAARNMYFMVLASEEPFDVRVLNYAPGVVDTQ 193 (253)
T ss_pred ----cccHHHHhhhhHHHHHHHHHHHhhcCccceeEEEccCCcccch
Confidence 2256788999999999999999865 3 899999999998664
|
|
| >PRK06720 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=9.1e-09 Score=92.51 Aligned_cols=86 Identities=17% Similarity=0.192 Sum_probs=65.4
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhh-ccCCeEEEEecCCCHHHHHHhhccC--
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLL-QKHQVFIVEGDLNDAPLLTKLFDVV-- 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~v~~v~~Dl~d~~~l~~~~~~~-- 192 (469)
.++++++||||+|+||..+++.|.++|++|++++|... .......... ....+.++.+|++|.++++++++..
T Consensus 14 l~gk~~lVTGa~~GIG~aia~~l~~~G~~V~l~~r~~~----~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~v~~~~~ 89 (169)
T PRK06720 14 LAGKVAIVTGGGIGIGRNTALLLAKQGAKVIVTDIDQE----SGQATVEEITNLGGEALFVSYDMEKQGDWQRVISITLN 89 (169)
T ss_pred cCCCEEEEecCCChHHHHHHHHHHHCCCEEEEEECCHH----HHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999998543 1111112211 1235678899999999988876432
Q ss_pred ---CccEEEEcccccC
Q 012176 193 ---PFTHVLHLAAQAG 205 (469)
Q Consensus 193 ---~~d~Vih~Aa~~~ 205 (469)
++|++|||||...
T Consensus 90 ~~G~iDilVnnAG~~~ 105 (169)
T PRK06720 90 AFSRIDMLFQNAGLYK 105 (169)
T ss_pred HcCCCCEEEECCCcCC
Confidence 6799999999744
|
|
| >PTZ00325 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=6e-09 Score=102.81 Aligned_cols=177 Identities=19% Similarity=0.115 Sum_probs=121.6
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCC--CcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCC
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRG--DGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVP 193 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~ 193 (469)
.++++|+|+|++|.||+.++..|..++ +++.++|+...... ..++.+ ........+.+|+.++.+.++++
T Consensus 6 ~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~~~~g~------a~Dl~~-~~~~~~v~~~td~~~~~~~l~ga- 77 (321)
T PTZ00325 6 LKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVGAPGV------AADLSH-IDTPAKVTGYADGELWEKALRGA- 77 (321)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecCCCccc------ccchhh-cCcCceEEEecCCCchHHHhCCC-
Confidence 455699999999999999999998654 68999998221110 001111 01123345666666667788888
Q ss_pred ccEEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcCccccCCCCCC--CCCCCCCCCCCCChHH
Q 012176 194 FTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQV--PFSESHRTDQPASLYA 271 (469)
Q Consensus 194 ~d~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS~~vyg~~~~~--~~~E~~~~~~p~~~Y~ 271 (469)
|+||++||.... ...+..+.+..|+..+.+++++++++++. ++|+++|-.+-....-. ...+.... +|...||
T Consensus 78 -DvVVitaG~~~~--~~~tR~dll~~N~~i~~~i~~~i~~~~~~-~iviv~SNPvdv~~~~~~~~~~~~sg~-p~~~viG 152 (321)
T PTZ00325 78 -DLVLICAGVPRK--PGMTRDDLFNTNAPIVRDLVAAVASSAPK-AIVGIVSNPVNSTVPIAAETLKKAGVY-DPRKLFG 152 (321)
T ss_pred -CEEEECCCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHHCCC-eEEEEecCcHHHHHHHHHhhhhhccCC-Chhheee
Confidence 999999997332 22456788999999999999999999998 89999986654322110 01122222 4566777
Q ss_pred HHHHHHHHHHHHHHHHhCCcEEEEeecceecCCCC
Q 012176 272 ATKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGR 306 (469)
Q Consensus 272 ~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~Gp~~~ 306 (469)
.+-+..-++-..+++..++...-|+ ++|+|..++
T Consensus 153 ~g~LDs~R~r~~la~~l~v~~~~V~-~~VlGeHGd 186 (321)
T PTZ00325 153 VTTLDVVRARKFVAEALGMNPYDVN-VPVVGGHSG 186 (321)
T ss_pred chhHHHHHHHHHHHHHhCcChhheE-EEEEeecCC
Confidence 7756666666667777899988888 889997665
|
|
| >PRK08309 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=7.8e-09 Score=93.55 Aligned_cols=103 Identities=18% Similarity=0.228 Sum_probs=76.7
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccC-----C
Q 012176 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV-----P 193 (469)
Q Consensus 119 ~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~-----~ 193 (469)
|+++||||+||+|. +++.|.++|++|++++|+.+ ..............+.++.+|+.|.+++.++++++ +
T Consensus 1 m~vlVtGGtG~gg~-la~~L~~~G~~V~v~~R~~~----~~~~l~~~l~~~~~i~~~~~Dv~d~~sv~~~i~~~l~~~g~ 75 (177)
T PRK08309 1 MHALVIGGTGMLKR-VSLWLCEKGFHVSVIARREV----KLENVKRESTTPESITPLPLDYHDDDALKLAIKSTIEKNGP 75 (177)
T ss_pred CEEEEECcCHHHHH-HHHHHHHCcCEEEEEECCHH----HHHHHHHHhhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 67999999998876 99999999999999998542 11111111112347888999999999999888754 5
Q ss_pred ccEEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCC---CeEEEEc
Q 012176 194 FTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQ---PSIVWAS 244 (469)
Q Consensus 194 ~d~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~---~~~V~~S 244 (469)
+|++|+.+ .+.++.++..+|++.|+. .+||++=
T Consensus 76 id~lv~~v------------------h~~~~~~~~~~~~~~gv~~~~~~~~h~~ 111 (177)
T PRK08309 76 FDLAVAWI------------------HSSAKDALSVVCRELDGSSETYRLFHVL 111 (177)
T ss_pred CeEEEEec------------------cccchhhHHHHHHHHccCCCCceEEEEe
Confidence 68888765 344678999999999864 1677764
|
|
| >COG0623 FabI Enoyl-[acyl-carrier-protein] | Back alignment and domain information |
|---|
Probab=98.82 E-value=6.8e-07 Score=81.74 Aligned_cols=228 Identities=12% Similarity=0.066 Sum_probs=140.3
Q ss_pred CCCCEEEEEcCC--ChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcc-CCeEEEEecCCCHHHHHHhhccC
Q 012176 116 PNGMTVLVTGAA--GFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQK-HQVFIVEGDLNDAPLLTKLFDVV 192 (469)
Q Consensus 116 ~~~~~VlVtGat--G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~-~~v~~v~~Dl~d~~~l~~~~~~~ 192 (469)
.++|++||+|-. .-|+..|++.|.++|.++......+ .+++.-.++.+. ....++++|++|.++++++|+..
T Consensus 4 L~GK~~lI~Gvan~rSIAwGIAk~l~~~GAeL~fTy~~e-----~l~krv~~la~~~~s~~v~~cDV~~d~~i~~~f~~i 78 (259)
T COG0623 4 LEGKRILIMGVANNRSIAWGIAKALAEQGAELAFTYQGE-----RLEKRVEELAEELGSDLVLPCDVTNDESIDALFATI 78 (259)
T ss_pred cCCceEEEEEecccccHHHHHHHHHHHcCCEEEEEeccH-----HHHHHHHHHHhhccCCeEEecCCCCHHHHHHHHHHH
Confidence 678999999865 6899999999999999998876533 233322333332 24568999999999999999865
Q ss_pred -----CccEEEEcccccChhh-----h---ccChHHHHHHHHHHHHHHHHHHHhcC-CCCeEEEEcCccccCCCCCCCCC
Q 012176 193 -----PFTHVLHLAAQAGVRY-----A---MQNPQSYVASNIAGFVNLLEVCKSVN-PQPSIVWASSSSVYGLNTQVPFS 258 (469)
Q Consensus 193 -----~~d~Vih~Aa~~~~~~-----~---~~~~~~~~~~Nv~~~~~ll~aa~~~~-~~~~~V~~SS~~vyg~~~~~~~~ 258 (469)
++|.|||+.|+..-.. . .++....+++-.-....+..+|+..- ....+|-++ -+|...
T Consensus 79 ~~~~g~lD~lVHsIaFa~k~el~G~~~dtsre~f~~a~~IS~YS~~~lak~a~~lM~~ggSiltLt---Ylgs~r----- 150 (259)
T COG0623 79 KKKWGKLDGLVHSIAFAPKEELKGDYLDTSREGFLIAMDISAYSFTALAKAARPLMNNGGSILTLT---YLGSER----- 150 (259)
T ss_pred HHhhCcccEEEEEeccCChHHhCCcccccCHHHHHhHhhhhHhhHHHHHHHHHHhcCCCCcEEEEE---ecccee-----
Confidence 6899999999854221 1 12222334444444555566555432 222566544 122111
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcc
Q 012176 259 ESHRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREV 335 (469)
Q Consensus 259 E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 335 (469)
..+..+.-|.+|++.|..++-++... |++++.|--|.|=.--...-..+..+++...+..|+
T Consensus 151 ----~vPnYNvMGvAKAaLEasvRyLA~dlG~~gIRVNaISAGPIrTLAasgI~~f~~~l~~~e~~aPl----------- 215 (259)
T COG0623 151 ----VVPNYNVMGVAKAALEASVRYLAADLGKEGIRVNAISAGPIRTLAASGIGDFRKMLKENEANAPL----------- 215 (259)
T ss_pred ----ecCCCchhHHHHHHHHHHHHHHHHHhCccCeEEeeecccchHHHHhhccccHHHHHHHHHhhCCc-----------
Confidence 11345789999999999999888665 577777766554221111101122333333333333
Q ss_pred eEecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCCc
Q 012176 336 ARDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTSP 375 (469)
Q Consensus 336 ~~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~~ 375 (469)
+.-+.++||.+..+.++..-.. ...|++.++-+|-.
T Consensus 216 -~r~vt~eeVG~tA~fLlSdLss---giTGei~yVD~G~~ 251 (259)
T COG0623 216 -RRNVTIEEVGNTAAFLLSDLSS---GITGEIIYVDSGYH 251 (259)
T ss_pred -cCCCCHHHhhhhHHHHhcchhc---ccccceEEEcCCce
Confidence 2345689998877776654322 34568887777643
|
|
| >PLN00106 malate dehydrogenase | Back alignment and domain information |
|---|
Probab=98.80 E-value=2.5e-08 Score=98.52 Aligned_cols=174 Identities=17% Similarity=0.076 Sum_probs=118.0
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHCC--CcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCcc
Q 012176 118 GMTVLVTGAAGFVGSHCSLALKKRG--DGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFT 195 (469)
Q Consensus 118 ~~~VlVtGatG~IG~~l~~~L~~~G--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~d 195 (469)
..+|+|||++|.||..++..|..++ .+++++|+.+... ..+ ++. +........++.+.+++.+.++++ |
T Consensus 18 ~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~~~g-~a~-----Dl~-~~~~~~~i~~~~~~~d~~~~l~~a--D 88 (323)
T PLN00106 18 GFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIANTPG-VAA-----DVS-HINTPAQVRGFLGDDQLGDALKGA--D 88 (323)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCCCCe-eEc-----hhh-hCCcCceEEEEeCCCCHHHHcCCC--C
Confidence 3689999999999999999999765 4899999855111 000 110 001112233444445577889988 9
Q ss_pred EEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcCccccCCC--CCCCCCCCCCCCCCCChHHHH
Q 012176 196 HVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLN--TQVPFSESHRTDQPASLYAAT 273 (469)
Q Consensus 196 ~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS~~vyg~~--~~~~~~E~~~~~~p~~~Y~~s 273 (469)
+|||+||.... ...+..+.+..|+..++++++.+++++.. .+|+++|--+-+.. ......+... ..|...||.+
T Consensus 89 iVVitAG~~~~--~g~~R~dll~~N~~i~~~i~~~i~~~~p~-aivivvSNPvD~~~~i~t~~~~~~s~-~p~~~viG~~ 164 (323)
T PLN00106 89 LVIIPAGVPRK--PGMTRDDLFNINAGIVKTLCEAVAKHCPN-ALVNIISNPVNSTVPIAAEVLKKAGV-YDPKKLFGVT 164 (323)
T ss_pred EEEEeCCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHHCCC-eEEEEeCCCccccHHHHHHHHHHcCC-CCcceEEEEe
Confidence 99999997432 23467789999999999999999999987 77777762221000 0000011111 2566788999
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEeecceecCCC
Q 012176 274 KKAGEEIAHTYNHIYGLALTGLRFFTVYGPWG 305 (469)
Q Consensus 274 K~~~E~~~~~~~~~~gi~~~ilRp~~v~Gp~~ 305 (469)
+...+++-..+++.+|++..-| -++|+|..+
T Consensus 165 ~LDs~Rl~~~lA~~lgv~~~~V-~~~ViGeHg 195 (323)
T PLN00106 165 TLDVVRANTFVAEKKGLDPADV-DVPVVGGHA 195 (323)
T ss_pred cchHHHHHHHHHHHhCCChhhe-EEEEEEeCC
Confidence 9999999999999999988888 466777653
|
|
| >KOG1478 consensus 3-keto sterol reductase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.77 E-value=5.5e-08 Score=89.73 Aligned_cols=182 Identities=14% Similarity=0.076 Sum_probs=117.6
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCc-----EEEEeCCCCCCChhHHHHHHHhh-ccCCeEEEEecCCCHHHHHHhhc
Q 012176 117 NGMTVLVTGAAGFVGSHCSLALKKRGDG-----VLGLDNFNSYYDPSLKRARQKLL-QKHQVFIVEGDLNDAPLLTKLFD 190 (469)
Q Consensus 117 ~~~~VlVtGatG~IG~~l~~~L~~~G~~-----V~~~~r~~~~~~~~~~~~~~~~~-~~~~v~~v~~Dl~d~~~l~~~~~ 190 (469)
..|.+||||++..||..|+.+|++..++ +++..|+-+..+....+.+.-.. ....++++..|+++..++.++.+
T Consensus 2 ~RKvalITGanSglGl~i~~RLl~~~De~~~ltl~ltcR~~~kae~vc~~lk~f~p~~~i~~~yvlvD~sNm~Sv~~A~~ 81 (341)
T KOG1478|consen 2 MRKVALITGANSGLGLAICKRLLAEDDENVRLTLCLTCRNMSKAEAVCAALKAFHPKSTIEVTYVLVDVSNMQSVFRASK 81 (341)
T ss_pred CceEEEEecCCCcccHHHHHHHHhccCCceeEEEEEEeCChhHHHHHHHHHHHhCCCceeEEEEEEEehhhHHHHHHHHH
Confidence 3478999999999999999999998654 55666754432222222111111 13478999999999988777766
Q ss_pred cC-----CccEEEEcccccCh-------------------------------hhhccChHHHHHHHHHHHHHHHHHH---
Q 012176 191 VV-----PFTHVLHLAAQAGV-------------------------------RYAMQNPQSYVASNIAGFVNLLEVC--- 231 (469)
Q Consensus 191 ~~-----~~d~Vih~Aa~~~~-------------------------------~~~~~~~~~~~~~Nv~~~~~ll~aa--- 231 (469)
+. +.|.|+-|||.... ..+.++...+++.||.|..-+++..
T Consensus 82 di~~rf~~ld~iylNAg~~~~~gi~w~~avf~~fsnpv~amt~pt~~~~t~G~is~D~lg~iFetnVFGhfyli~~l~pl 161 (341)
T KOG1478|consen 82 DIKQRFQRLDYIYLNAGIMPNPGINWKAAVFGLFSNPVIAMTSPTEGLLTQGKISADGLGEIFETNVFGHFYLIRELEPL 161 (341)
T ss_pred HHHHHhhhccEEEEccccCCCCcccHHHHHHHHhhchhHHhcCchhhhhhcceecccchhhHhhhcccchhhhHhhhhhH
Confidence 53 57999999986321 1123455678999999987777643
Q ss_pred HhcCCCCeEEEEcCccccCCCCCCCCCCCC-CCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeecceec
Q 012176 232 KSVNPQPSIVWASSSSVYGLNTQVPFSESH-RTDQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYG 302 (469)
Q Consensus 232 ~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~-~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~G 302 (469)
+.++..+++|++||...-.. -++-+| .......+|.-||++..-+--...+. .|+.-.++.||....
T Consensus 162 l~~~~~~~lvwtSS~~a~kk----~lsleD~q~~kg~~pY~sSKrl~DlLh~A~~~~~~~~g~~qyvv~pg~~tt 232 (341)
T KOG1478|consen 162 LCHSDNPQLVWTSSRMARKK----NLSLEDFQHSKGKEPYSSSKRLTDLLHVALNRNFKPLGINQYVVQPGIFTT 232 (341)
T ss_pred hhcCCCCeEEEEeecccccc----cCCHHHHhhhcCCCCcchhHHHHHHHHHHHhccccccchhhhcccCceeec
Confidence 23444458999999654321 122222 11245567999999988654444432 256666777776443
|
|
| >PF13950 Epimerase_Csub: UDP-glucose 4-epimerase C-term subunit; PDB: 1EK5_A 1I3K_B 1I3M_B 1HZJ_A 1EK6_A 1I3N_A 1I3L_A 2CNB_B 1GY8_D 1NAI_A | Back alignment and domain information |
|---|
Probab=98.70 E-value=3.1e-08 Score=72.94 Aligned_cols=60 Identities=23% Similarity=0.318 Sum_probs=40.1
Q ss_pred HHHHHhCCCccceeecCCCCCCCCcccCChHHHHHhcCCCccCcHHHHHHHHHHHHHHHcC
Q 012176 384 ILENLLNTKAKKHVIRMPRNGDVPYTHANVSLAYKDFGYKPTTDLAAGLRKFVKWYVSYYG 444 (469)
Q Consensus 384 ~i~~~~g~~~~~~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~~l~~~l~~~v~~~~~~~~ 444 (469)
.++++.|++.++.+.+ .+.||+...++|++||+++|||+|+++|++++++.++|+.++-.
T Consensus 1 A~e~vtG~~i~~~~~~-rR~GD~~~~~Ad~~kA~~~LgW~p~~~L~~~i~~~w~W~~~np~ 60 (62)
T PF13950_consen 1 AFEKVTGKKIPVEYAP-RRPGDPAHLVADISKAREELGWKPKYSLEDMIRDAWNWQKKNPN 60 (62)
T ss_dssp HHHHHHTS---EEEE----TT--SEE-B--HHHHHHC----SSSHHHHHHHHHHHHHHSTT
T ss_pred CcHHHHCCCCCceECC-CCCCchhhhhCCHHHHHHHhCCCcCCCHHHHHHHHHHHHHHCcC
Confidence 4688999998888655 68999999999999999999999999999999999999977643
|
... |
| >PRK13656 trans-2-enoyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.70 E-value=6.6e-07 Score=89.33 Aligned_cols=176 Identities=16% Similarity=0.045 Sum_probs=103.6
Q ss_pred CCCCEEEEEcCCChhHHH--HHHHHHHCCCcEEEEeCCCCCCChh-------HHHHHHHhhc--cCCeEEEEecCCCHHH
Q 012176 116 PNGMTVLVTGAAGFVGSH--CSLALKKRGDGVLGLDNFNSYYDPS-------LKRARQKLLQ--KHQVFIVEGDLNDAPL 184 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~--l~~~L~~~G~~V~~~~r~~~~~~~~-------~~~~~~~~~~--~~~v~~v~~Dl~d~~~ 184 (469)
..+|++|||||++.||.+ ++++| +.|++|+++++........ .......... ...+..+.+|+++.+.
T Consensus 39 ~ggK~aLVTGaSsGIGlA~~IA~al-~~GA~Vi~v~~~~~~~~~~~~tagwy~~~a~~~~a~~~G~~a~~i~~DVss~E~ 117 (398)
T PRK13656 39 NGPKKVLVIGASSGYGLASRIAAAF-GAGADTLGVFFEKPGTEKKTGTAGWYNSAAFDKFAKAAGLYAKSINGDAFSDEI 117 (398)
T ss_pred CCCCEEEEECCCchHhHHHHHHHHH-HcCCeEEEEecCcchhhhcccccccchHHHHHHHHHhcCCceEEEEcCCCCHHH
Confidence 457999999999999999 89999 9999999988643211110 0001111111 2246788999999999
Q ss_pred HHHhhccC-----CccEEEEcccccChhh------------------h-----------------ccChHHH-HHHHHHH
Q 012176 185 LTKLFDVV-----PFTHVLHLAAQAGVRY------------------A-----------------MQNPQSY-VASNIAG 223 (469)
Q Consensus 185 l~~~~~~~-----~~d~Vih~Aa~~~~~~------------------~-----------------~~~~~~~-~~~Nv~~ 223 (469)
++++++.. ++|+|||++|...-.. . ....+++ .-+++.|
T Consensus 118 v~~lie~I~e~~G~IDiLVnSaA~~~r~~p~~g~~~~s~lKpi~~~~~~~~~d~~~~~i~~~s~~~~~~~ei~~Tv~vMg 197 (398)
T PRK13656 118 KQKVIELIKQDLGQVDLVVYSLASPRRTDPKTGEVYRSVLKPIGEPYTGKTLDTDKDVIIEVTVEPATEEEIADTVKVMG 197 (398)
T ss_pred HHHHHHHHHHhcCCCCEEEECCccCCCCCcccCceeecccccccccccCCcccccccceeEEEEeeCCHHHHHHHHHhhc
Confidence 88887654 5899999999742110 0 0000111 1223334
Q ss_pred HHHHHH---HHHhcCC---CCeEEEEcCccccCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEE
Q 012176 224 FVNLLE---VCKSVNP---QPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTG 294 (469)
Q Consensus 224 ~~~ll~---aa~~~~~---~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~i 294 (469)
...... +....+. ..++|-.|.. |.....|+ .....-|.+|...|..++.++.+. |+++.+
T Consensus 198 gedw~~Wi~al~~a~lla~g~~~va~TY~---G~~~t~p~-------Y~~g~mG~AKa~LE~~~r~La~~L~~~giran~ 267 (398)
T PRK13656 198 GEDWELWIDALDEAGVLAEGAKTVAYSYI---GPELTHPI-------YWDGTIGKAKKDLDRTALALNEKLAAKGGDAYV 267 (398)
T ss_pred cchHHHHHHHHHhcccccCCcEEEEEecC---Ccceeecc-------cCCchHHHHHHHHHHHHHHHHHHhhhcCCEEEE
Confidence 322222 2222221 1256655532 22111111 111357999999999999998764 678888
Q ss_pred Eeecceec
Q 012176 295 LRFFTVYG 302 (469)
Q Consensus 295 lRp~~v~G 302 (469)
+-.+.+.-
T Consensus 268 i~~g~~~T 275 (398)
T PRK13656 268 SVLKAVVT 275 (398)
T ss_pred EecCcccc
Confidence 76665544
|
|
| >COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.62 E-value=2.4e-07 Score=92.76 Aligned_cols=98 Identities=29% Similarity=0.248 Sum_probs=78.7
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHCC-CcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCccE
Q 012176 118 GMTVLVTGAAGFVGSHCSLALKKRG-DGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTH 196 (469)
Q Consensus 118 ~~~VlVtGatG~IG~~l~~~L~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~d~ 196 (469)
+|+|+|.|+ |+||+.++..|+++| .+|++.+|..+ +..+.......+++..+.|+.|.+.+.+++++. |+
T Consensus 1 m~~ilviGa-G~Vg~~va~~la~~~d~~V~iAdRs~~------~~~~i~~~~~~~v~~~~vD~~d~~al~~li~~~--d~ 71 (389)
T COG1748 1 MMKILVIGA-GGVGSVVAHKLAQNGDGEVTIADRSKE------KCARIAELIGGKVEALQVDAADVDALVALIKDF--DL 71 (389)
T ss_pred CCcEEEECC-chhHHHHHHHHHhCCCceEEEEeCCHH------HHHHHHhhccccceeEEecccChHHHHHHHhcC--CE
Confidence 478999998 999999999999999 89999999543 111222222348999999999999999999998 99
Q ss_pred EEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEc
Q 012176 197 VLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWAS 244 (469)
Q Consensus 197 Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~S 244 (469)
|||++.... ..+++++|.++|+ ++|=+|
T Consensus 72 VIn~~p~~~------------------~~~i~ka~i~~gv--~yvDts 99 (389)
T COG1748 72 VINAAPPFV------------------DLTILKACIKTGV--DYVDTS 99 (389)
T ss_pred EEEeCCchh------------------hHHHHHHHHHhCC--CEEEcc
Confidence 999997632 2488999999987 577655
|
|
| >PRK09620 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.2e-07 Score=89.34 Aligned_cols=84 Identities=18% Similarity=0.217 Sum_probs=59.8
Q ss_pred CCCEEEEEcCC----------------ChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCC
Q 012176 117 NGMTVLVTGAA----------------GFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLN 180 (469)
Q Consensus 117 ~~~~VlVtGat----------------G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~ 180 (469)
.+|+||||+|. ||+|.+|+++|+++|++|+++++........ ......+..+.+|..
T Consensus 2 ~gk~vlITaG~T~E~iD~VR~itN~SSGfiGs~LA~~L~~~Ga~V~li~g~~~~~~~~-------~~~~~~~~~V~s~~d 74 (229)
T PRK09620 2 KGKKVLITSGGCLEKWDQVRGHTNMAKGTIGRIIAEELISKGAHVIYLHGYFAEKPND-------INNQLELHPFEGIID 74 (229)
T ss_pred CCCEEEEeCCCccCCcCCeeEecCCCcCHHHHHHHHHHHHCCCeEEEEeCCCcCCCcc-------cCCceeEEEEecHHH
Confidence 57899999886 9999999999999999999998643211000 001123445666444
Q ss_pred CHHHHHHhhccCCccEEEEcccccChh
Q 012176 181 DAPLLTKLFDVVPFTHVLHLAAQAGVR 207 (469)
Q Consensus 181 d~~~l~~~~~~~~~d~Vih~Aa~~~~~ 207 (469)
..+.+.++++..++|+|||+||..+..
T Consensus 75 ~~~~l~~~~~~~~~D~VIH~AAvsD~~ 101 (229)
T PRK09620 75 LQDKMKSIITHEKVDAVIMAAAGSDWV 101 (229)
T ss_pred HHHHHHHHhcccCCCEEEECcccccee
Confidence 456788888766779999999985543
|
|
| >cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases | Back alignment and domain information |
|---|
Probab=98.55 E-value=6.3e-07 Score=89.06 Aligned_cols=177 Identities=14% Similarity=0.099 Sum_probs=103.2
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCC-------CcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhcc
Q 012176 119 MTVLVTGAAGFVGSHCSLALKKRG-------DGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDV 191 (469)
Q Consensus 119 ~~VlVtGatG~IG~~l~~~L~~~G-------~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~ 191 (469)
.+|+||||+|+||++++..|+..+ .+|+++++.... + ..........+ ......+|+.+..++.+.+++
T Consensus 3 ~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~-~-~~~g~~~Dl~d--~~~~~~~~~~~~~~~~~~l~~ 78 (325)
T cd01336 3 IRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPAL-K-ALEGVVMELQD--CAFPLLKSVVATTDPEEAFKD 78 (325)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCcc-c-cccceeeehhh--ccccccCCceecCCHHHHhCC
Confidence 579999999999999999999844 589999985421 0 00000000000 000112344444567778888
Q ss_pred CCccEEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcC-CCCeEEEEcCccccCCCCCCCCCCCCCCCCCCChH
Q 012176 192 VPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVN-PQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLY 270 (469)
Q Consensus 192 ~~~d~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~-~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y 270 (469)
+ |+|||+||.... ...+..+.++.|+.-.+.+....+++. ....+|.+|...-.- .....+......+...=
T Consensus 79 a--DiVI~tAG~~~~--~~~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD~~---t~~~~k~~~~~~~~~ig 151 (325)
T cd01336 79 V--DVAILVGAMPRK--EGMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVVGNPANTN---ALILLKYAPSIPKENFT 151 (325)
T ss_pred C--CEEEEeCCcCCC--CCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecCcHHHH---HHHHHHHcCCCCHHHEE
Confidence 8 999999997432 234567899999999999999888884 444566666411000 00000000000111111
Q ss_pred HHHHHHHHHHHHHHHHHhCCcEEEEeecceecCCCC
Q 012176 271 AATKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGR 306 (469)
Q Consensus 271 ~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~Gp~~~ 306 (469)
+.+.+..-++-..+++.++++..-++-..|+|..++
T Consensus 152 ~gt~LDs~R~r~~la~~l~v~~~~v~~~~V~GeHG~ 187 (325)
T cd01336 152 ALTRLDHNRAKSQIALKLGVPVSDVKNVIIWGNHSS 187 (325)
T ss_pred eeehHHHHHHHHHHHHHhCcChhhceEeEEEEcCCC
Confidence 122333334444555667888888877778886554
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases | Back alignment and domain information |
|---|
Probab=98.52 E-value=6.1e-07 Score=88.92 Aligned_cols=188 Identities=14% Similarity=0.124 Sum_probs=123.6
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHCCC-------cEEEEeCCCCC--CChhHHHHHHHh-hccCCeEEEEecCCCHHHHHH
Q 012176 118 GMTVLVTGAAGFVGSHCSLALKKRGD-------GVLGLDNFNSY--YDPSLKRARQKL-LQKHQVFIVEGDLNDAPLLTK 187 (469)
Q Consensus 118 ~~~VlVtGatG~IG~~l~~~L~~~G~-------~V~~~~r~~~~--~~~~~~~~~~~~-~~~~~v~~v~~Dl~d~~~l~~ 187 (469)
.++|.|+|++|.||..++..|...|. ++.++|+.+.. ............ .....+.+.. .| .+
T Consensus 2 p~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~---~~----~~ 74 (322)
T cd01338 2 PVRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVITD---DP----NV 74 (322)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEEec---Cc----HH
Confidence 36899999999999999999998764 79999885431 111100000000 0001233221 12 34
Q ss_pred hhccCCccEEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCC-CCeEEEEcCcc---ccCCCCCCCCCCCCCC
Q 012176 188 LFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNP-QPSIVWASSSS---VYGLNTQVPFSESHRT 263 (469)
Q Consensus 188 ~~~~~~~d~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~-~~~~V~~SS~~---vyg~~~~~~~~E~~~~ 263 (469)
.++++ |+||-+||... -...+..+.+..|+.-.+.+....++++. ...+|.+|-.. +|- .-+....
T Consensus 75 ~~~da--DivvitaG~~~--k~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD~~t~~------~~k~sg~ 144 (322)
T cd01338 75 AFKDA--DWALLVGAKPR--GPGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVGNPCNTNALI------AMKNAPD 144 (322)
T ss_pred HhCCC--CEEEEeCCCCC--CCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEecCcHHHHHHH------HHHHcCC
Confidence 56677 99999999732 23346678899999999999999998884 54677776411 110 0001111
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHhCCcEEEEeecceecCCCCCCChHHHHHHHHHcCCce
Q 012176 264 DQPASLYAATKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTI 324 (469)
Q Consensus 264 ~~p~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~ 324 (469)
.++...||.+++..+++...+++.+|++...+|..+|||+.+. ..++.|......|+++
T Consensus 145 ~p~~~ViG~t~LDs~Rl~~~la~~lgv~~~~v~~~~V~GeHG~--s~vp~~S~~~v~g~pl 203 (322)
T cd01338 145 IPPDNFTAMTRLDHNRAKSQLAKKAGVPVTDVKNMVIWGNHSP--TQYPDFTNATIGGKPA 203 (322)
T ss_pred CChHheEEehHHHHHHHHHHHHHHhCcChhHeEEEEEEeCCcc--cEEEehhhcEECCEeH
Confidence 2456689999999999999999999999999999999999754 3334444444556555
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >TIGR00715 precor6x_red precorrin-6x reductase | Back alignment and domain information |
|---|
Probab=98.32 E-value=2e-06 Score=82.19 Aligned_cols=94 Identities=19% Similarity=0.159 Sum_probs=73.6
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCccEEE
Q 012176 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTHVL 198 (469)
Q Consensus 119 ~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~d~Vi 198 (469)
|+|||+||||. |+.|++.|.+.|++|+++.+.... ...+...+...+..+..|.+.+.+++.+.++|+||
T Consensus 1 m~ILvlGGT~e-gr~la~~L~~~g~~v~~s~~t~~~---------~~~~~~~g~~~v~~g~l~~~~l~~~l~~~~i~~VI 70 (256)
T TIGR00715 1 MTVLLMGGTVD-SRAIAKGLIAQGIEILVTVTTSEG---------KHLYPIHQALTVHTGALDPQELREFLKRHSIDILV 70 (256)
T ss_pred CeEEEEechHH-HHHHHHHHHhCCCeEEEEEccCCc---------cccccccCCceEEECCCCHHHHHHHHHhcCCCEEE
Confidence 68999999999 999999999999999999985531 11122223445556777888899999998899999
Q ss_pred EcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCC
Q 012176 199 HLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQ 237 (469)
Q Consensus 199 h~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~ 237 (469)
|.+..+. ..-+.++.++|++.|+.
T Consensus 71 DAtHPfA---------------~~is~~a~~a~~~~~ip 94 (256)
T TIGR00715 71 DATHPFA---------------AQITTNATAVCKELGIP 94 (256)
T ss_pred EcCCHHH---------------HHHHHHHHHHHHHhCCc
Confidence 9986532 23578899999999985
|
This enzyme was found to be a monomer by gel filtration. |
| >PRK06732 phosphopantothenate--cysteine ligase; Validated | Back alignment and domain information |
|---|
Probab=98.31 E-value=2.5e-06 Score=80.60 Aligned_cols=72 Identities=18% Similarity=0.119 Sum_probs=49.3
Q ss_pred EEE-cCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCC--HHHHHHhhccCCccEEE
Q 012176 122 LVT-GAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLND--APLLTKLFDVVPFTHVL 198 (469)
Q Consensus 122 lVt-GatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d--~~~l~~~~~~~~~d~Vi 198 (469)
.|| .+|||||.+|+++|+++|++|++++|.... ......++.++..+..+ .+.+.+.+++. |+||
T Consensus 19 ~itN~SSG~iG~aLA~~L~~~G~~V~li~r~~~~----------~~~~~~~v~~i~v~s~~~m~~~l~~~~~~~--DivI 86 (229)
T PRK06732 19 GITNHSTGQLGKIIAETFLAAGHEVTLVTTKTAV----------KPEPHPNLSIIEIENVDDLLETLEPLVKDH--DVLI 86 (229)
T ss_pred eecCccchHHHHHHHHHHHhCCCEEEEEECcccc----------cCCCCCCeEEEEEecHHHHHHHHHHHhcCC--CEEE
Confidence 444 678999999999999999999999874320 00012366666654332 24455666655 9999
Q ss_pred EcccccC
Q 012176 199 HLAAQAG 205 (469)
Q Consensus 199 h~Aa~~~ 205 (469)
|+||...
T Consensus 87 h~AAvsd 93 (229)
T PRK06732 87 HSMAVSD 93 (229)
T ss_pred eCCccCC
Confidence 9999854
|
|
| >PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase | Back alignment and domain information |
|---|
Probab=98.28 E-value=6.2e-06 Score=84.34 Aligned_cols=92 Identities=28% Similarity=0.254 Sum_probs=67.3
Q ss_pred EEEEcCCChhHHHHHHHHHHCCC--cEEEEeCCCCCCChhHHHHHHH--hhccCCeEEEEecCCCHHHHHHhhccCCccE
Q 012176 121 VLVTGAAGFVGSHCSLALKKRGD--GVLGLDNFNSYYDPSLKRARQK--LLQKHQVFIVEGDLNDAPLLTKLFDVVPFTH 196 (469)
Q Consensus 121 VlVtGatG~IG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~--~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~d~ 196 (469)
|+|.|| |++|+.+++.|++++. +|++.+|+.+ +...- .....++..+..|+.|.++++++++++ |+
T Consensus 1 IlvlG~-G~vG~~~~~~L~~~~~~~~v~va~r~~~-------~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~--dv 70 (386)
T PF03435_consen 1 ILVLGA-GRVGSAIARLLARRGPFEEVTVADRNPE-------KAERLAEKLLGDRVEAVQVDVNDPESLAELLRGC--DV 70 (386)
T ss_dssp EEEE---SHHHHHHHHHHHCTTCE-EEEEEESSHH-------HHHHHHT--TTTTEEEEE--TTTHHHHHHHHTTS--SE
T ss_pred CEEEcC-cHHHHHHHHHHhcCCCCCcEEEEECCHH-------HHHHHHhhccccceeEEEEecCCHHHHHHHHhcC--CE
Confidence 789999 9999999999999964 8999999432 21111 114569999999999999999999999 99
Q ss_pred EEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEE
Q 012176 197 VLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVW 242 (469)
Q Consensus 197 Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~ 242 (469)
||||++... ...++++|.+.|+ ++|-
T Consensus 71 Vin~~gp~~------------------~~~v~~~~i~~g~--~yvD 96 (386)
T PF03435_consen 71 VINCAGPFF------------------GEPVARACIEAGV--HYVD 96 (386)
T ss_dssp EEE-SSGGG------------------HHHHHHHHHHHT---EEEE
T ss_pred EEECCccch------------------hHHHHHHHHHhCC--Ceec
Confidence 999998731 2467888888876 6665
|
Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A. |
| >PRK05086 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.24 E-value=2e-05 Score=78.03 Aligned_cols=115 Identities=23% Similarity=0.172 Sum_probs=77.6
Q ss_pred CEEEEEcCCChhHHHHHHHHHH---CCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCcc
Q 012176 119 MTVLVTGAAGFVGSHCSLALKK---RGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFT 195 (469)
Q Consensus 119 ~~VlVtGatG~IG~~l~~~L~~---~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~d 195 (469)
|+|+|+||+|.||++++..|.. .++++++++|.+.. .. .............+.+ .+.+++.+.++++ |
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~~--~g---~alDl~~~~~~~~i~~--~~~~d~~~~l~~~--D 71 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVT--PG---VAVDLSHIPTAVKIKG--FSGEDPTPALEGA--D 71 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCCC--cc---eehhhhcCCCCceEEE--eCCCCHHHHcCCC--C
Confidence 6899999999999999988855 35688998885431 10 0011111111223333 2233445566777 9
Q ss_pred EEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcC
Q 012176 196 HVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASS 245 (469)
Q Consensus 196 ~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS 245 (469)
+||.++|.... ...+..+.+..|...+..+++++++++.. ++|.+.|
T Consensus 72 iVIitaG~~~~--~~~~R~dll~~N~~i~~~ii~~i~~~~~~-~ivivvs 118 (312)
T PRK05086 72 VVLISAGVARK--PGMDRSDLFNVNAGIVKNLVEKVAKTCPK-ACIGIIT 118 (312)
T ss_pred EEEEcCCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHhCCC-eEEEEcc
Confidence 99999997332 22456688999999999999999999887 6666665
|
|
| >cd00704 MDH Malate dehydrogenase | Back alignment and domain information |
|---|
Probab=98.21 E-value=1.4e-05 Score=79.38 Aligned_cols=162 Identities=16% Similarity=0.141 Sum_probs=99.3
Q ss_pred EEEEEcCCChhHHHHHHHHHHCCC-------cEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCH----------
Q 012176 120 TVLVTGAAGFVGSHCSLALKKRGD-------GVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDA---------- 182 (469)
Q Consensus 120 ~VlVtGatG~IG~~l~~~L~~~G~-------~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~---------- 182 (469)
+|.|+||+|.||+.++..|...|. +++++|+.+. . ...+....|+.|.
T Consensus 2 KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~-~--------------~~~~g~~~Dl~d~~~~~~~~~~i 66 (323)
T cd00704 2 HVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPA-M--------------KALEGVVMELQDCAFPLLKGVVI 66 (323)
T ss_pred EEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCc-c--------------CccceeeeehhhhcccccCCcEE
Confidence 699999999999999999987652 5899988541 0 0222333344333
Q ss_pred -HHHHHhhccCCccEEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcC-CCCeEEEEcCcc---ccCCCCCCCC
Q 012176 183 -PLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVN-PQPSIVWASSSS---VYGLNTQVPF 257 (469)
Q Consensus 183 -~~l~~~~~~~~~d~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~-~~~~~V~~SS~~---vyg~~~~~~~ 257 (469)
....+.++++ |+|||+||... -...+..+.+..|+.-.+.+....++.. ....+|.+|-.. +|-. .
T Consensus 67 ~~~~~~~~~~a--DiVVitAG~~~--~~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD~~t~~~-----~ 137 (323)
T cd00704 67 TTDPEEAFKDV--DVAILVGAFPR--KPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVGNPANTNALIA-----L 137 (323)
T ss_pred ecChHHHhCCC--CEEEEeCCCCC--CcCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEeCCcHHHHHHHH-----H
Confidence 2345677888 99999999732 2335677899999999999999998884 664666665311 0000 0
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHHHHHHHhCCcEEEEeecceecCCCC
Q 012176 258 SESHRTDQPASLYAATKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGR 306 (469)
Q Consensus 258 ~E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~Gp~~~ 306 (469)
.... ..++....+.+.+..-++-..+++..+++..-|.-.+|+|..++
T Consensus 138 k~sg-~~p~~~vig~t~LDs~R~r~~la~~l~v~~~~V~~~~V~GeHG~ 185 (323)
T cd00704 138 KNAP-NLPPKNFTALTRLDHNRAKAQVARKLGVRVSDVKNVIIWGNHSN 185 (323)
T ss_pred HHcC-CCCHHHEEEeeHHHHHHHHHHHHHHhCcCHHHceeeeEEecccC
Confidence 0000 00111112334444444444455556776666655667886444
|
Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase | Back alignment and domain information |
|---|
Probab=98.14 E-value=1.3e-05 Score=73.82 Aligned_cols=82 Identities=18% Similarity=0.177 Sum_probs=61.9
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCcc
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFT 195 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~d 195 (469)
.++++++|+||+|.+|+.+++.|.+.|++|++++|+.+. ............+..+...|..|.+++.++++++ |
T Consensus 26 l~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~~~----~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--d 99 (194)
T cd01078 26 LKGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLER----AQKAADSLRARFGEGVGAVETSDDAARAAAIKGA--D 99 (194)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHH----HHHHHHHHHhhcCCcEEEeeCCCHHHHHHHHhcC--C
Confidence 567899999999999999999999999999999985321 1111111111225567778899999999999888 9
Q ss_pred EEEEcccc
Q 012176 196 HVLHLAAQ 203 (469)
Q Consensus 196 ~Vih~Aa~ 203 (469)
+||++...
T Consensus 100 iVi~at~~ 107 (194)
T cd01078 100 VVFAAGAA 107 (194)
T ss_pred EEEECCCC
Confidence 99997653
|
Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo |
| >TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=98.00 E-value=5.5e-05 Score=75.17 Aligned_cols=162 Identities=15% Similarity=0.098 Sum_probs=99.6
Q ss_pred EEEEEcCCChhHHHHHHHHHHCCC-------cEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHH---------
Q 012176 120 TVLVTGAAGFVGSHCSLALKKRGD-------GVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAP--------- 183 (469)
Q Consensus 120 ~VlVtGatG~IG~~l~~~L~~~G~-------~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~--------- 183 (469)
+|+|+|++|.||.+++..|...|. +++++|+.+... ..+....|+.|..
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~~---------------~a~g~~~Dl~d~~~~~~~~~~~ 65 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAMK---------------VLEGVVMELMDCAFPLLDGVVP 65 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCccc---------------ccceeEeehhcccchhcCceec
Confidence 589999999999999999987543 588998844310 1233344444443
Q ss_pred --HHHHhhccCCccEEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcC-CCCeEEEEcCcc---ccCCCCCCCC
Q 012176 184 --LLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVN-PQPSIVWASSSS---VYGLNTQVPF 257 (469)
Q Consensus 184 --~l~~~~~~~~~d~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~-~~~~~V~~SS~~---vyg~~~~~~~ 257 (469)
...+.++++ |+||++||.... ...+..+.+..|+.-.+.+....+++. ....+|.+|-.. .|- .
T Consensus 66 ~~~~~~~~~~a--DiVVitAG~~~~--~~~tr~~ll~~N~~i~k~i~~~i~~~~~~~~iiivvsNPvDv~t~v------~ 135 (324)
T TIGR01758 66 THDPAVAFTDV--DVAILVGAFPRK--EGMERRDLLSKNVKIFKEQGRALDKLAKKDCKVLVVGNPANTNALV------L 135 (324)
T ss_pred cCChHHHhCCC--CEEEEcCCCCCC--CCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCcHHHHHHH------H
Confidence 334667777 999999997432 223467889999999999999999884 654666666311 000 0
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHHHHHHHhCCcEEEEeecceecCCCC
Q 012176 258 SESHRTDQPASLYAATKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGR 306 (469)
Q Consensus 258 ~E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~Gp~~~ 306 (469)
.+......+...=..+.+..-++-..+++..+++..-++-.+|+|..++
T Consensus 136 ~~~sg~~~~~vig~gt~LDs~R~r~~la~~l~v~~~~V~~~~V~GeHG~ 184 (324)
T TIGR01758 136 SNYAPSIPPKNFSALTRLDHNRALAQVAERAGVPVSDVKNVIIWGNHSS 184 (324)
T ss_pred HHHcCCCCcceEEEeeehHHHHHHHHHHHHhCCChhhceEeEEEECCCC
Confidence 0000000111111112233334444455667888888877788886554
|
This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography |
| >PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated | Back alignment and domain information |
|---|
Probab=97.98 E-value=2.2e-05 Score=79.97 Aligned_cols=78 Identities=19% Similarity=0.140 Sum_probs=60.1
Q ss_pred CCCCCEEEEEcC----------------CChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEec
Q 012176 115 RPNGMTVLVTGA----------------AGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGD 178 (469)
Q Consensus 115 ~~~~~~VlVtGa----------------tG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~D 178 (469)
..++++|+|||| +|.+|.+++++|.++|++|+++++.... . ...+ +...|
T Consensus 185 ~l~gk~vlITgG~T~E~ID~VR~isN~SSG~~G~aiA~~l~~~Ga~V~~v~~~~~~-~-----------~~~~--~~~~d 250 (399)
T PRK05579 185 DLAGKRVLITAGPTREPIDPVRYITNRSSGKMGYALARAAARRGADVTLVSGPVNL-P-----------TPAG--VKRID 250 (399)
T ss_pred ccCCCEEEEeCCCccccccceeeeccCCcchHHHHHHHHHHHCCCEEEEeCCCccc-c-----------CCCC--cEEEc
Confidence 468899999999 8999999999999999999999875421 0 0112 34579
Q ss_pred CCCHHHHHHhhccC--CccEEEEcccccCh
Q 012176 179 LNDAPLLTKLFDVV--PFTHVLHLAAQAGV 206 (469)
Q Consensus 179 l~d~~~l~~~~~~~--~~d~Vih~Aa~~~~ 206 (469)
+++.+++.+++... ++|++||+||....
T Consensus 251 v~~~~~~~~~v~~~~~~~DilI~~Aav~d~ 280 (399)
T PRK05579 251 VESAQEMLDAVLAALPQADIFIMAAAVADY 280 (399)
T ss_pred cCCHHHHHHHHHHhcCCCCEEEEccccccc
Confidence 99988877776532 46999999997543
|
|
| >PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis [] | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.00011 Score=63.92 Aligned_cols=111 Identities=20% Similarity=0.200 Sum_probs=76.2
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCC--CcEEEEeCCCCCCChhHHHHHHHhh---ccC--CeEEEEecCCCHHHHHHhhcc
Q 012176 119 MTVLVTGAAGFVGSHCSLALKKRG--DGVLGLDNFNSYYDPSLKRARQKLL---QKH--QVFIVEGDLNDAPLLTKLFDV 191 (469)
Q Consensus 119 ~~VlVtGatG~IG~~l~~~L~~~G--~~V~~~~r~~~~~~~~~~~~~~~~~---~~~--~v~~v~~Dl~d~~~l~~~~~~ 191 (469)
|+|.|+|++|.+|++++..|...+ .+++++++.+. ..+....++. ... .+.+.. .+. +.+++
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~----~~~g~a~Dl~~~~~~~~~~~~i~~---~~~----~~~~~ 69 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINED----KAEGEALDLSHASAPLPSPVRITS---GDY----EALKD 69 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHH----HHHHHHHHHHHHHHGSTEEEEEEE---SSG----GGGTT
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcc----cceeeehhhhhhhhhccccccccc---ccc----ccccc
Confidence 689999999999999999999985 58999998533 1111111111 111 223333 223 34566
Q ss_pred CCccEEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEc
Q 012176 192 VPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWAS 244 (469)
Q Consensus 192 ~~~d~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~S 244 (469)
+ |+||-+||... -...+..+.++.|..-.+.+.+...+.+....++.+|
T Consensus 70 a--Divvitag~~~--~~g~sR~~ll~~N~~i~~~~~~~i~~~~p~~~vivvt 118 (141)
T PF00056_consen 70 A--DIVVITAGVPR--KPGMSRLDLLEANAKIVKEIAKKIAKYAPDAIVIVVT 118 (141)
T ss_dssp E--SEEEETTSTSS--STTSSHHHHHHHHHHHHHHHHHHHHHHSTTSEEEE-S
T ss_pred c--cEEEEeccccc--cccccHHHHHHHhHhHHHHHHHHHHHhCCccEEEEeC
Confidence 6 99999999732 2234567888999999999999999988765666665
|
L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C .... |
| >KOG2733 consensus Uncharacterized membrane protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.92 E-value=1.9e-05 Score=76.68 Aligned_cols=105 Identities=14% Similarity=0.125 Sum_probs=75.0
Q ss_pred EEEEEcCCChhHHHHHHHHHH----CCCcEEEEeCCCCCCChhHHHHHHHhhc-cCCeEEEEecCCCHHHHHHhhccCCc
Q 012176 120 TVLVTGAAGFVGSHCSLALKK----RGDGVLGLDNFNSYYDPSLKRARQKLLQ-KHQVFIVEGDLNDAPLLTKLFDVVPF 194 (469)
Q Consensus 120 ~VlVtGatG~IG~~l~~~L~~----~G~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~v~~v~~Dl~d~~~l~~~~~~~~~ 194 (469)
-++|.||+||-|.++++++++ .|...-+..|+.......++......-. -....++.+|.+|++++.+..+.+
T Consensus 7 DvVIyGASGfTG~yivee~v~~~~~~~~slavAGRn~~KL~~vL~~~~~k~~~~ls~~~i~i~D~~n~~Sl~emak~~-- 84 (423)
T KOG2733|consen 7 DVVIYGASGFTGKYIVEEAVSSQVFEGLSLAVAGRNEKKLQEVLEKVGEKTGTDLSSSVILIADSANEASLDEMAKQA-- 84 (423)
T ss_pred eEEEEccccccceeeHHHHhhhhcccCceEEEecCCHHHHHHHHHHHhhccCCCcccceEEEecCCCHHHHHHHHhhh--
Confidence 589999999999999999999 6888888999765443333332222111 112338999999999999999998
Q ss_pred cEEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEc
Q 012176 195 THVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWAS 244 (469)
Q Consensus 195 d~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~S 244 (469)
.+|+||+|..... -.+++.+|.++|. +.|=+|
T Consensus 85 ~vivN~vGPyR~h----------------GE~VVkacienG~--~~vDIS 116 (423)
T KOG2733|consen 85 RVIVNCVGPYRFH----------------GEPVVKACIENGT--HHVDIS 116 (423)
T ss_pred EEEEeccccceec----------------CcHHHHHHHHcCC--ceeccC
Confidence 9999999974321 1356667777665 455444
|
|
| >KOG4022 consensus Dihydropteridine reductase DHPR/QDPR [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.0018 Score=56.33 Aligned_cols=204 Identities=14% Similarity=0.109 Sum_probs=115.8
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCC--C-----HHHHHHhhcc
Q 012176 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLN--D-----APLLTKLFDV 191 (469)
Q Consensus 119 ~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~--d-----~~~l~~~~~~ 191 (469)
.+|+|-||-|-+|+.+++.+.+++|-|.-++..+.... .--.++.+|-. + .+.+.+.+.+
T Consensus 4 grVivYGGkGALGSacv~~FkannywV~siDl~eNe~A-------------d~sI~V~~~~swtEQe~~v~~~vg~sL~g 70 (236)
T KOG4022|consen 4 GRVIVYGGKGALGSACVEFFKANNYWVLSIDLSENEQA-------------DSSILVDGNKSWTEQEQSVLEQVGSSLQG 70 (236)
T ss_pred ceEEEEcCcchHhHHHHHHHHhcCeEEEEEeecccccc-------------cceEEecCCcchhHHHHHHHHHHHHhhcc
Confidence 47999999999999999999999999888876443110 01123333321 1 1335566777
Q ss_pred CCccEEEEcccccChh-----hhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcC-ccccCCCCCCCCCCCCCCCC
Q 012176 192 VPFTHVLHLAAQAGVR-----YAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASS-SSVYGLNTQVPFSESHRTDQ 265 (469)
Q Consensus 192 ~~~d~Vih~Aa~~~~~-----~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS-~~vyg~~~~~~~~E~~~~~~ 265 (469)
.+.|.||..||..... -...+.+.++...+....--...+-++-..+-++.+.. ....++. +
T Consensus 71 ekvDav~CVAGGWAGGnAksKdl~KNaDLMwKQSvwtSaIsa~lAt~HLK~GGLL~LtGAkaAl~gT------------P 138 (236)
T KOG4022|consen 71 EKVDAVFCVAGGWAGGNAKSKDLVKNADLMWKQSVWTSAISAKLATTHLKPGGLLQLTGAKAALGGT------------P 138 (236)
T ss_pred cccceEEEeeccccCCCcchhhhhhchhhHHHHHHHHHHHHHHHHHhccCCCceeeecccccccCCC------------C
Confidence 7899999999863221 11223333444333322111222222222223444443 2333332 3
Q ss_pred CCChHHHHHHHHHHHHHHHHHH-hCCc----EEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceEecc
Q 012176 266 PASLYAATKKAGEEIAHTYNHI-YGLA----LTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFT 340 (469)
Q Consensus 266 p~~~Y~~sK~~~E~~~~~~~~~-~gi~----~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v 340 (469)
..-.||-+|.+..+++++++.+ .|++ +..|-|-.+-.|-.+.. ++ ....-+|+
T Consensus 139 gMIGYGMAKaAVHqLt~SLaak~SGlP~gsaa~~ilPVTLDTPMNRKw---------------MP-------~ADfssWT 196 (236)
T KOG4022|consen 139 GMIGYGMAKAAVHQLTSSLAAKDSGLPDGSAALTILPVTLDTPMNRKW---------------MP-------NADFSSWT 196 (236)
T ss_pred cccchhHHHHHHHHHHHHhcccccCCCCCceeEEEeeeeccCcccccc---------------CC-------CCcccCcc
Confidence 4567999999999999999854 3433 33444555555544332 11 12234678
Q ss_pred cHHHHHHHHHHHhccCCCCCCCCCceEEEeCC
Q 012176 341 YIDDVVKGCVGATGSGGKKRGPAQLRVYNLGN 372 (469)
Q Consensus 341 ~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~ 372 (469)
+..-+++.+++....... +..|-...+..
T Consensus 197 PL~fi~e~flkWtt~~~R---PssGsLlqi~T 225 (236)
T KOG4022|consen 197 PLSFISEHFLKWTTETSR---PSSGSLLQITT 225 (236)
T ss_pred cHHHHHHHHHHHhccCCC---CCCCceEEEEe
Confidence 888999988888765432 33344444443
|
|
| >PRK12548 shikimate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.0001 Score=72.26 Aligned_cols=84 Identities=17% Similarity=0.210 Sum_probs=59.7
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCc-EEEEeCCCCCCChhHHHHHHHhhc-cCCeEEEEecCCCHHHHHHhhccCC
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDG-VLGLDNFNSYYDPSLKRARQKLLQ-KHQVFIVEGDLNDAPLLTKLFDVVP 193 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~-~~~v~~v~~Dl~d~~~l~~~~~~~~ 193 (469)
.++++++|+|| |.+|++++..|.+.|.+ |++++|+.+..+. .......... ...+.+...|+.|.+.+.+.++.+
T Consensus 124 ~~~k~vlI~GA-GGagrAia~~La~~G~~~V~I~~R~~~~~~~-a~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~- 200 (289)
T PRK12548 124 VKGKKLTVIGA-GGAATAIQVQCALDGAKEITIFNIKDDFYER-AEQTAEKIKQEVPECIVNVYDLNDTEKLKAEIASS- 200 (289)
T ss_pred cCCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEeCCchHHHH-HHHHHHHHhhcCCCceeEEechhhhhHHHhhhccC-
Confidence 56789999998 89999999999999986 9999996421111 1111111111 224556678998888888888877
Q ss_pred ccEEEEcccc
Q 012176 194 FTHVLHLAAQ 203 (469)
Q Consensus 194 ~d~Vih~Aa~ 203 (469)
|+|||+-..
T Consensus 201 -DilINaTp~ 209 (289)
T PRK12548 201 -DILVNATLV 209 (289)
T ss_pred -CEEEEeCCC
Confidence 999997643
|
|
| >COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00034 Score=65.86 Aligned_cols=75 Identities=25% Similarity=0.404 Sum_probs=59.7
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHh-hccCCccEE
Q 012176 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKL-FDVVPFTHV 197 (469)
Q Consensus 119 ~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~-~~~~~~d~V 197 (469)
|+++|.|+ |-+|..+++.|.+.||+|+++++..+ +.............+.+|-+|++.|+++ ++.+ |+|
T Consensus 1 m~iiIiG~-G~vG~~va~~L~~~g~~Vv~Id~d~~-------~~~~~~~~~~~~~~v~gd~t~~~~L~~agi~~a--D~v 70 (225)
T COG0569 1 MKIIIIGA-GRVGRSVARELSEEGHNVVLIDRDEE-------RVEEFLADELDTHVVIGDATDEDVLEEAGIDDA--DAV 70 (225)
T ss_pred CEEEEECC-cHHHHHHHHHHHhCCCceEEEEcCHH-------HHHHHhhhhcceEEEEecCCCHHHHHhcCCCcC--CEE
Confidence 67899896 99999999999999999999998432 2122122235889999999999999988 6766 999
Q ss_pred EEcccc
Q 012176 198 LHLAAQ 203 (469)
Q Consensus 198 ih~Aa~ 203 (469)
|-.-+.
T Consensus 71 va~t~~ 76 (225)
T COG0569 71 VAATGN 76 (225)
T ss_pred EEeeCC
Confidence 977654
|
|
| >PRK00066 ldh L-lactate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00077 Score=66.81 Aligned_cols=116 Identities=17% Similarity=0.127 Sum_probs=79.6
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCC--cEEEEeCCCCCCChhHHHHHHHhhc-cCCeEEEEecCCCHHHHHHhhccC
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGD--GVLGLDNFNSYYDPSLKRARQKLLQ-KHQVFIVEGDLNDAPLLTKLFDVV 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~-~~~v~~v~~Dl~d~~~l~~~~~~~ 192 (469)
..+++|.|+|+ |.+|..++-.|+..|. ++.++|++.+........ ...... ...+.+..+ + ++ .++++
T Consensus 4 ~~~~ki~iiGa-G~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~D-l~~~~~~~~~~~i~~~---~---~~-~~~~a 74 (315)
T PRK00066 4 KQHNKVVLVGD-GAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMD-LSHAVPFTSPTKIYAG---D---YS-DCKDA 74 (315)
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHH-HHhhccccCCeEEEeC---C---HH-HhCCC
Confidence 45689999998 9999999999999886 899999865432211111 111110 123334322 2 22 36777
Q ss_pred CccEEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEc
Q 012176 193 PFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWAS 244 (469)
Q Consensus 193 ~~d~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~S 244 (469)
|+||-.||... -...+..+.+..|+.-.+.+++.+++.+....+|.+|
T Consensus 75 --divIitag~~~--k~g~~R~dll~~N~~i~~~i~~~i~~~~~~~~vivvs 122 (315)
T PRK00066 75 --DLVVITAGAPQ--KPGETRLDLVEKNLKIFKSIVGEVMASGFDGIFLVAS 122 (315)
T ss_pred --CEEEEecCCCC--CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcc
Confidence 99999999732 2234567889999999999999999888775677666
|
|
| >cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00018 Score=71.11 Aligned_cols=117 Identities=17% Similarity=0.081 Sum_probs=76.0
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCC--cEEEEeCCC--CCCChhHHHHHHHhhccC-CeEEEEecCCCHHHHHHhhccCC
Q 012176 119 MTVLVTGAAGFVGSHCSLALKKRGD--GVLGLDNFN--SYYDPSLKRARQKLLQKH-QVFIVEGDLNDAPLLTKLFDVVP 193 (469)
Q Consensus 119 ~~VlVtGatG~IG~~l~~~L~~~G~--~V~~~~r~~--~~~~~~~~~~~~~~~~~~-~v~~v~~Dl~d~~~l~~~~~~~~ 193 (469)
|+|.|+|++|++|..++..|+..|+ +|++++|.. +................+ ...+... .| .+ .++++
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~~~~~l~~~~~dl~d~~~~~~~~~~i~~~--~d---~~-~l~~a- 73 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIYDALAAAGIDAEIKIS--SD---LS-DVAGS- 73 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECcccccccccccchhhhchhccCCCcEEEEC--CC---HH-HhCCC-
Confidence 6899999999999999999999986 499999843 111111111111111111 1111111 12 33 37777
Q ss_pred ccEEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcC
Q 012176 194 FTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASS 245 (469)
Q Consensus 194 ~d~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS 245 (469)
|+||-++|.... ...+..+..+.|+.-.+.+++...+.+....+|.+++
T Consensus 74 -DiViitag~p~~--~~~~r~dl~~~n~~i~~~~~~~i~~~~~~~~viv~~n 122 (309)
T cd05294 74 -DIVIITAGVPRK--EGMSRLDLAKKNAKIVKKYAKQIAEFAPDTKILVVTN 122 (309)
T ss_pred -CEEEEecCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 999999986321 2234467888999999999999888776657777776
|
The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox |
| >TIGR02114 coaB_strep phosphopantothenate--cysteine ligase, streptococcal | Back alignment and domain information |
|---|
Probab=97.68 E-value=8e-05 Score=70.25 Aligned_cols=69 Identities=13% Similarity=0.148 Sum_probs=48.5
Q ss_pred EEE-cCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccC-----Ccc
Q 012176 122 LVT-GAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV-----PFT 195 (469)
Q Consensus 122 lVt-GatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~-----~~d 195 (469)
.|| .++|+||.+++++|+++|++|+++++... . .... ...+|+.+.+.++++++.+ ++|
T Consensus 18 ~itN~SSGgIG~AIA~~la~~Ga~Vvlv~~~~~-----l--------~~~~--~~~~Dv~d~~s~~~l~~~v~~~~g~iD 82 (227)
T TIGR02114 18 SITNHSTGHLGKIITETFLSAGHEVTLVTTKRA-----L--------KPEP--HPNLSIREIETTKDLLITLKELVQEHD 82 (227)
T ss_pred eecCCcccHHHHHHHHHHHHCCCEEEEEcChhh-----c--------cccc--CCcceeecHHHHHHHHHHHHHHcCCCC
Confidence 444 55899999999999999999999876211 0 0000 1346888887777665432 479
Q ss_pred EEEEcccccC
Q 012176 196 HVLHLAAQAG 205 (469)
Q Consensus 196 ~Vih~Aa~~~ 205 (469)
++|||||...
T Consensus 83 iLVnnAgv~d 92 (227)
T TIGR02114 83 ILIHSMAVSD 92 (227)
T ss_pred EEEECCEecc
Confidence 9999999743
|
In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the C-terminal region of TIGR00521, corresponding to phosphopantothenate--cysteine ligase activity. |
| >TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00013 Score=74.24 Aligned_cols=107 Identities=17% Similarity=0.148 Sum_probs=72.8
Q ss_pred CCCCCEEEEEcC----------------CChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEec
Q 012176 115 RPNGMTVLVTGA----------------AGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGD 178 (469)
Q Consensus 115 ~~~~~~VlVtGa----------------tG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~D 178 (469)
..++++|+|||| +|.+|..++++|.++|++|+++.+..... ...++ ...|
T Consensus 182 ~~~~~~vlit~g~t~E~iD~VR~itN~SSG~~g~~~a~~~~~~Ga~V~~~~g~~~~~------------~~~~~--~~~~ 247 (390)
T TIGR00521 182 DLEGKRVLITAGPTREPIDPVRFISNLSSGKMGLALAEAAYKRGADVTLITGPVSLL------------TPPGV--KSIK 247 (390)
T ss_pred ccCCceEEEecCCccCCCCceeeecCCCcchHHHHHHHHHHHCCCEEEEeCCCCccC------------CCCCc--EEEE
Confidence 367899999998 36799999999999999999988644210 11122 4578
Q ss_pred CCCHHHH-HHhhccC--CccEEEEcccccChhhhccC---h---HHHHHHHHHHHHHHHHHHHhcC
Q 012176 179 LNDAPLL-TKLFDVV--PFTHVLHLAAQAGVRYAMQN---P---QSYVASNIAGFVNLLEVCKSVN 235 (469)
Q Consensus 179 l~d~~~l-~~~~~~~--~~d~Vih~Aa~~~~~~~~~~---~---~~~~~~Nv~~~~~ll~aa~~~~ 235 (469)
+.+.+++ +.+++.. +.|++|++||.......... . ...+..|+..+..++...++..
T Consensus 248 v~~~~~~~~~~~~~~~~~~D~~i~~Aavsd~~~~~~~~~Ki~~~~~~~~l~L~~~pdil~~l~~~~ 313 (390)
T TIGR00521 248 VSTAEEMLEAALNELAKDFDIFISAAAVADFKPKTVFEGKIKKQGEELSLKLVKNPDIIAEVRKIK 313 (390)
T ss_pred eccHHHHHHHHHHhhcccCCEEEEccccccccccccccccccccCCceeEEEEeCcHHHHHHHhhC
Confidence 8888877 6555322 46999999998554321111 1 1123467777888888776554
|
This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity. |
| >PRK14982 acyl-ACP reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.59 E-value=7.7e-05 Score=74.07 Aligned_cols=73 Identities=22% Similarity=0.258 Sum_probs=51.3
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHC-C-CcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccC
Q 012176 115 RPNGMTVLVTGAAGFVGSHCSLALKKR-G-DGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV 192 (469)
Q Consensus 115 ~~~~~~VlVtGatG~IG~~l~~~L~~~-G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~ 192 (469)
..++++|+||||+|+||+.+++.|.++ | .+|+++.|... ........ +..+|+. .+.+++.++
T Consensus 152 ~l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~----rl~~La~e--------l~~~~i~---~l~~~l~~a 216 (340)
T PRK14982 152 DLSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQE----RLQELQAE--------LGGGKIL---SLEEALPEA 216 (340)
T ss_pred CcCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHH----HHHHHHHH--------hccccHH---hHHHHHccC
Confidence 367899999999999999999999865 5 58899888432 11111111 1123433 366788877
Q ss_pred CccEEEEccccc
Q 012176 193 PFTHVLHLAAQA 204 (469)
Q Consensus 193 ~~d~Vih~Aa~~ 204 (469)
|+|||+++..
T Consensus 217 --DiVv~~ts~~ 226 (340)
T PRK14982 217 --DIVVWVASMP 226 (340)
T ss_pred --CEEEECCcCC
Confidence 9999999873
|
|
| >PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00089 Score=67.01 Aligned_cols=112 Identities=20% Similarity=0.244 Sum_probs=74.2
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCC-cEEEEeCCCCC---------CC--------hhHHHHHH---HhhccCCeEE
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGD-GVLGLDNFNSY---------YD--------PSLKRARQ---KLLQKHQVFI 174 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~-~V~~~~r~~~~---------~~--------~~~~~~~~---~~~~~~~v~~ 174 (469)
....+|+|.|+ |.+|+.+++.|.+.|. +++++|...-. +. ........ .....-.++.
T Consensus 22 L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~inp~v~v~~ 100 (339)
T PRK07688 22 LREKHVLIIGA-GALGTANAEMLVRAGVGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEEINSDVRVEA 100 (339)
T ss_pred hcCCcEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHHHHCCCcEEEE
Confidence 45678999997 9999999999999998 88888875311 00 00011111 1112224666
Q ss_pred EEecCCCHHHHHHhhccCCccEEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcCccccC
Q 012176 175 VEGDLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYG 250 (469)
Q Consensus 175 v~~Dl~d~~~l~~~~~~~~~d~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS~~vyg 250 (469)
+..+++ .+.+.++++++ |+||.+.. |...-..+.++|.+.++ .+|+.+..+.||
T Consensus 101 ~~~~~~-~~~~~~~~~~~--DlVid~~D-----------------n~~~r~~ln~~~~~~~i--P~i~~~~~g~~G 154 (339)
T PRK07688 101 IVQDVT-AEELEELVTGV--DLIIDATD-----------------NFETRFIVNDAAQKYGI--PWIYGACVGSYG 154 (339)
T ss_pred EeccCC-HHHHHHHHcCC--CEEEEcCC-----------------CHHHHHHHHHHHHHhCC--CEEEEeeeeeee
Confidence 666765 45677788877 99999863 22233456678888886 488888777665
|
|
| >PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00087 Score=67.03 Aligned_cols=112 Identities=18% Similarity=0.212 Sum_probs=73.5
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCC-cEEEEeCCCCC---------CCh--------hHH---HHHHHhhccCCeEE
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGD-GVLGLDNFNSY---------YDP--------SLK---RARQKLLQKHQVFI 174 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~-~V~~~~r~~~~---------~~~--------~~~---~~~~~~~~~~~v~~ 174 (469)
.++++|+|.|+ |.+|.++++.|.+.|. +++++|+..-. +.+ ... +........-.++.
T Consensus 22 L~~~~VlIiG~-GglGs~va~~La~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~inp~v~i~~ 100 (338)
T PRK12475 22 IREKHVLIVGA-GALGAANAEALVRAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKINSEVEIVP 100 (338)
T ss_pred hcCCcEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHCCCcEEEE
Confidence 56678999997 8899999999999997 78888875411 000 000 11111112235667
Q ss_pred EEecCCCHHHHHHhhccCCccEEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcCccccC
Q 012176 175 VEGDLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYG 250 (469)
Q Consensus 175 v~~Dl~d~~~l~~~~~~~~~d~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS~~vyg 250 (469)
+..|++ .+.++++++++ |+||.+... ...-..+-++|.+.+++ +|+.+..+.+|
T Consensus 101 ~~~~~~-~~~~~~~~~~~--DlVid~~D~-----------------~~~r~~in~~~~~~~ip--~i~~~~~g~~G 154 (338)
T PRK12475 101 VVTDVT-VEELEELVKEV--DLIIDATDN-----------------FDTRLLINDLSQKYNIP--WIYGGCVGSYG 154 (338)
T ss_pred EeccCC-HHHHHHHhcCC--CEEEEcCCC-----------------HHHHHHHHHHHHHcCCC--EEEEEecccEE
Confidence 777775 45678888877 999998732 22223355778888874 88877766655
|
|
| >cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.002 Score=63.67 Aligned_cols=168 Identities=15% Similarity=0.112 Sum_probs=98.4
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCC--CcEEEEeCCCCCCChhHHHHHHHhh-ccCCeEEEEecCCCHHHHHHhhccCCcc
Q 012176 119 MTVLVTGAAGFVGSHCSLALKKRG--DGVLGLDNFNSYYDPSLKRARQKLL-QKHQVFIVEGDLNDAPLLTKLFDVVPFT 195 (469)
Q Consensus 119 ~~VlVtGatG~IG~~l~~~L~~~G--~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~v~~v~~Dl~d~~~l~~~~~~~~~d 195 (469)
++|.|+|+ |.+|+.++..|+..| ++|++++|..+.............. ....+.+.. .+.+ .++++ |
T Consensus 1 ~kI~IIGa-G~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~~---~~~~----~l~~a--D 70 (306)
T cd05291 1 RKVVIIGA-GHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIKA---GDYS----DCKDA--D 70 (306)
T ss_pred CEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEEc---CCHH----HhCCC--C
Confidence 37899996 999999999999998 6899999966532221111111110 111233332 2222 24666 9
Q ss_pred EEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcCcc---ccCCCCCCCCCCCCCCCCCCChHHH
Q 012176 196 HVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSS---VYGLNTQVPFSESHRTDQPASLYAA 272 (469)
Q Consensus 196 ~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS~~---vyg~~~~~~~~E~~~~~~p~~~Y~~ 272 (469)
+||.++|... -...+..+.+..|+.-.+.+.+.+++++....+|.+|-.. .|-. ... ...++....|.
T Consensus 71 IVIitag~~~--~~g~~R~dll~~N~~i~~~~~~~i~~~~~~~~vivvsNP~d~~~~~~-----~~~--~g~p~~~v~g~ 141 (306)
T cd05291 71 IVVITAGAPQ--KPGETRLDLLEKNAKIMKSIVPKIKASGFDGIFLVASNPVDVITYVV-----QKL--SGLPKNRVIGT 141 (306)
T ss_pred EEEEccCCCC--CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecChHHHHHHHH-----HHH--hCcCHHHEeec
Confidence 9999998732 2234566889999999999999999988776677766311 0000 000 00011111222
Q ss_pred -HHHHHHHHHHHHHHHhCCcEEEEeecceecCCCC
Q 012176 273 -TKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGR 306 (469)
Q Consensus 273 -sK~~~E~~~~~~~~~~gi~~~ilRp~~v~Gp~~~ 306 (469)
+-+..-++-..+++..+++..-|+. +|+|..+.
T Consensus 142 gt~LDs~R~~~~la~~l~v~~~~v~~-~V~G~Hg~ 175 (306)
T cd05291 142 GTSLDTARLRRALAEKLNVDPRSVHA-YVLGEHGD 175 (306)
T ss_pred cchHHHHHHHHHHHHHHCCCcccceE-EEEecCCC
Confidence 1122333344445556888777875 78887543
|
L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine |
| >cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.0045 Score=59.79 Aligned_cols=114 Identities=14% Similarity=0.077 Sum_probs=76.3
Q ss_pred EEEEcCCChhHHHHHHHHHHCC----CcEEEEeCCCCCCChhHHHHHHHhhccC-CeEEEEecCCCHHHHHHhhccCCcc
Q 012176 121 VLVTGAAGFVGSHCSLALKKRG----DGVLGLDNFNSYYDPSLKRARQKLLQKH-QVFIVEGDLNDAPLLTKLFDVVPFT 195 (469)
Q Consensus 121 VlVtGatG~IG~~l~~~L~~~G----~~V~~~~r~~~~~~~~~~~~~~~~~~~~-~v~~v~~Dl~d~~~l~~~~~~~~~d 195 (469)
|.|+||+|.+|..++..|+..| .+|+++|+.++......... ....... ...+.. ..++.+.++++ |
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl-~~~~~~~~~~~i~~-----~~d~~~~~~~a--D 72 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDL-QDAVEPLADIKVSI-----TDDPYEAFKDA--D 72 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHH-HHhhhhccCcEEEE-----CCchHHHhCCC--C
Confidence 5789999999999999999998 79999998765433322211 1111111 122221 12245667888 9
Q ss_pred EEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEc
Q 012176 196 HVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWAS 244 (469)
Q Consensus 196 ~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~S 244 (469)
+||-.++.... .-.........|+.-.+.+.+..++.+....+|..|
T Consensus 73 iVv~t~~~~~~--~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~~i~~t 119 (263)
T cd00650 73 VVIITAGVGRK--PGMGRLDLLKRNVPIVKEIGDNIEKYSPDAWIIVVS 119 (263)
T ss_pred EEEECCCCCCC--cCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 99999986332 223445677889999999999998888765666665
|
Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains |
| >COG4982 3-oxoacyl-[acyl-carrier protein] | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.0034 Score=65.36 Aligned_cols=171 Identities=15% Similarity=0.141 Sum_probs=111.1
Q ss_pred CCCCEEEEEcCC-ChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhc-----cCCeEEEEecCCCHHHHHHhh
Q 012176 116 PNGMTVLVTGAA-GFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQ-----KHQVFIVEGDLNDAPLLTKLF 189 (469)
Q Consensus 116 ~~~~~VlVtGat-G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~-----~~~v~~v~~Dl~d~~~l~~~~ 189 (469)
...+.++||||+ |-||..+++.|++-|.+|++..-+- +.......+.+.. ..-+.++..++.+..+++.++
T Consensus 394 y~d~valVTGA~~gSIaa~Vv~~LL~gGAtVI~TTS~~---s~~r~efyr~LYa~~a~~ga~LwvVpaN~~SysDVdAlI 470 (866)
T COG4982 394 YGDKVALVTGASKGSIAAAVVARLLAGGATVIATTSRL---SEERTEFYRSLYARHARYGAALWVVPANMGSYSDVDALI 470 (866)
T ss_pred cccceEEEecCCCcchHHHHHHHHHhCCcEEEEEcccc---cHHHHHHHHHHHHhhCCCCceEEEEeccccchhhHHHHH
Confidence 566899999997 9999999999999999999886422 2333333333332 225778888888777777666
Q ss_pred c---cC----------------CccEEEEcccccCh-hhhccChH--HHHHHHHHHHHHHHHHHHhcCCC------CeEE
Q 012176 190 D---VV----------------PFTHVLHLAAQAGV-RYAMQNPQ--SYVASNIAGFVNLLEVCKSVNPQ------PSIV 241 (469)
Q Consensus 190 ~---~~----------------~~d~Vih~Aa~~~~-~~~~~~~~--~~~~~Nv~~~~~ll~aa~~~~~~------~~~V 241 (469)
+ +. .+|.+|-+|+..-. .....+++ ..+++-+....+++-..++.+.. -|+|
T Consensus 471 ewIg~eq~~t~g~~s~~~k~a~~ptll~PFAAp~v~G~l~~agsraE~~~rilLw~V~Rliggl~~~~s~r~v~~R~hVV 550 (866)
T COG4982 471 EWIGDEQTETVGPQSIHIKLAWTPTLLFPFAAPRVSGELADAGSRAEFAMRILLWNVLRLIGGLKKQGSSRGVDTRLHVV 550 (866)
T ss_pred HHhccccccccCCcceecccccCcceeeecccCCccCccccCCchHHHHHHHHHHHHHHHHHHhhhhccccCcccceEEE
Confidence 4 10 36788888876211 22222333 34566666777777766554332 2566
Q ss_pred EEcCc--cccCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHhC----CcEEEEeecceecCC
Q 012176 242 WASSS--SVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIYG----LALTGLRFFTVYGPW 304 (469)
Q Consensus 242 ~~SS~--~vyg~~~~~~~~E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~g----i~~~ilRp~~v~Gp~ 304 (469)
...|. +.|| .-..|+.+|.+.|.++..|..+.+ +.++--++|++-|-+
T Consensus 551 LPgSPNrG~FG---------------gDGaYgEsK~aldav~~RW~sEs~Wa~~vsl~~A~IGWtrGTG 604 (866)
T COG4982 551 LPGSPNRGMFG---------------GDGAYGESKLALDAVVNRWHSESSWAARVSLAHALIGWTRGTG 604 (866)
T ss_pred ecCCCCCCccC---------------CCcchhhHHHHHHHHHHHhhccchhhHHHHHhhhheeeecccc
Confidence 66653 2333 235699999999999999887642 455555666666543
|
|
| >cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.0011 Score=65.46 Aligned_cols=166 Identities=19% Similarity=0.123 Sum_probs=101.4
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCC--CcEEEEeCCCCCCChhHHHHHHHhhcc-CCeEEEEecCCCHHHHHHhhccCCcc
Q 012176 119 MTVLVTGAAGFVGSHCSLALKKRG--DGVLGLDNFNSYYDPSLKRARQKLLQK-HQVFIVEGDLNDAPLLTKLFDVVPFT 195 (469)
Q Consensus 119 ~~VlVtGatG~IG~~l~~~L~~~G--~~V~~~~r~~~~~~~~~~~~~~~~~~~-~~v~~v~~Dl~d~~~l~~~~~~~~~d 195 (469)
|+|.|+|++|.+|..++-.|...| .++.++|.+. ... ....+.+. ....+.... . .+++.+.++++ |
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~~--a~g----~alDL~~~~~~~~i~~~~-~-~~~~y~~~~da--D 70 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIVN--TPG----VAADLSHINTPAKVTGYL-G-PEELKKALKGA--D 70 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecCc--cce----eehHhHhCCCcceEEEec-C-CCchHHhcCCC--C
Confidence 589999999999999999999887 5899998751 111 01111111 112222110 1 12244667788 9
Q ss_pred EEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcCcc-------ccCCCCCCCCCCCCCCCCCCC
Q 012176 196 HVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSS-------VYGLNTQVPFSESHRTDQPAS 268 (469)
Q Consensus 196 ~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS~~-------vyg~~~~~~~~E~~~~~~p~~ 268 (469)
+||-+||.. +-...+..+.+..|..-.+.+.+..++++....+|.+|-.. .|-.. .. . ...+..
T Consensus 71 ivvitaG~~--~k~g~tR~dll~~N~~i~~~i~~~i~~~~p~a~vivvtNPvDv~~~i~t~~~~-----~~-s-~~p~~r 141 (310)
T cd01337 71 VVVIPAGVP--RKPGMTRDDLFNINAGIVRDLATAVAKACPKALILIISNPVNSTVPIAAEVLK-----KA-G-VYDPKR 141 (310)
T ss_pred EEEEeCCCC--CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCchhhHHHHHHHHHH-----Hh-c-CCCHHH
Confidence 999999973 22335667899999999999999999888776777777422 11000 00 0 001111
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCcEEEEeecceecCC
Q 012176 269 LYAATKKAGEEIAHTYNHIYGLALTGLRFFTVYGPW 304 (469)
Q Consensus 269 ~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~Gp~ 304 (469)
..|..-...-++-..+++..|++..-|+ ++|+|..
T Consensus 142 viG~~~LDs~R~~~~la~~l~v~~~~V~-~~v~GeH 176 (310)
T cd01337 142 LFGVTTLDVVRANTFVAELLGLDPAKVN-VPVIGGH 176 (310)
T ss_pred EEeeechHHHHHHHHHHHHhCcCHHHEE-EEEEecC
Confidence 2222223334555556666788777777 7888876
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >TIGR01759 MalateDH-SF1 malate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.002 Score=63.97 Aligned_cols=172 Identities=15% Similarity=0.077 Sum_probs=101.1
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHCCC-------cEEEEeCCCCC-CChhHHHHHHHhh--ccCCeEEEEecCCCHHHHHH
Q 012176 118 GMTVLVTGAAGFVGSHCSLALKKRGD-------GVLGLDNFNSY-YDPSLKRARQKLL--QKHQVFIVEGDLNDAPLLTK 187 (469)
Q Consensus 118 ~~~VlVtGatG~IG~~l~~~L~~~G~-------~V~~~~r~~~~-~~~~~~~~~~~~~--~~~~v~~v~~Dl~d~~~l~~ 187 (469)
..+|.|+|++|++|..++..|...|. +++++|+.+.. ............. ...++.+.. ...+
T Consensus 3 p~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~-------~~~~ 75 (323)
T TIGR01759 3 PVRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAGVVATT-------DPEE 75 (323)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHHHhhccccccCCcEEec-------ChHH
Confidence 46899999999999999999998873 79999885421 0111111111100 011222221 1234
Q ss_pred hhccCCccEEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCC-CCeEEEEcCcc---ccCCCCCCCCCCCCCC
Q 012176 188 LFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNP-QPSIVWASSSS---VYGLNTQVPFSESHRT 263 (469)
Q Consensus 188 ~~~~~~~d~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~-~~~~V~~SS~~---vyg~~~~~~~~E~~~~ 263 (469)
.++++ |+||-+||.. +-...+..+.+..|+.-.+.+...+++++. ...+|.+|-.. +|- ..+..+-
T Consensus 76 ~~~da--DvVVitAG~~--~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPvDv~t~v------~~k~s~g 145 (323)
T TIGR01759 76 AFKDV--DAALLVGAFP--RKPGMERADLLSKNGKIFKEQGKALNKVAKKDVKVLVVGNPANTNALI------ASKNAPD 145 (323)
T ss_pred HhCCC--CEEEEeCCCC--CCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCcHHHHHHH------HHHHcCC
Confidence 56677 9999999973 223356778999999999999999998876 54666665311 000 0000000
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHhCCcEEEEeecceecCCCC
Q 012176 264 DQPASLYAATKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGR 306 (469)
Q Consensus 264 ~~p~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~Gp~~~ 306 (469)
.++....|.+.+..-++-..+++..+++..-++-..|+|..++
T Consensus 146 ~p~~rViG~t~LDs~R~r~~la~~l~v~~~~V~~~~V~GeHG~ 188 (323)
T TIGR01759 146 IPPKNFSAMTRLDHNRAKYQLAAKAGVPVSDVKNVIIWGNHSN 188 (323)
T ss_pred CCHHHEEEeeHHHHHHHHHHHHHHhCcChHHeEEeEEEecCCC
Confidence 0111223333344444444455667888888877778886554
|
This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms. |
| >COG3268 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0005 Score=66.55 Aligned_cols=76 Identities=16% Similarity=0.123 Sum_probs=56.5
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCccEEE
Q 012176 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTHVL 198 (469)
Q Consensus 119 ~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~d~Vi 198 (469)
..++|-||+||.|..++++|.++|.+-.+..|+.. .+...... -+.+.-..++.+++.+++.++.+ ++|+
T Consensus 7 ~d~iiYGAtGy~G~lvae~l~~~g~~~aLAgRs~~----kl~~l~~~----LG~~~~~~p~~~p~~~~~~~~~~--~VVl 76 (382)
T COG3268 7 YDIIIYGATGYAGGLVAEYLAREGLTAALAGRSSA----KLDALRAS----LGPEAAVFPLGVPAALEAMASRT--QVVL 76 (382)
T ss_pred eeEEEEccccchhHHHHHHHHHcCCchhhccCCHH----HHHHHHHh----cCccccccCCCCHHHHHHHHhcc--eEEE
Confidence 46899999999999999999999998877787443 22222221 13333444555589999999988 9999
Q ss_pred Eccccc
Q 012176 199 HLAAQA 204 (469)
Q Consensus 199 h~Aa~~ 204 (469)
||+|.+
T Consensus 77 ncvGPy 82 (382)
T COG3268 77 NCVGPY 82 (382)
T ss_pred eccccc
Confidence 999974
|
|
| >PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0011 Score=67.25 Aligned_cols=104 Identities=14% Similarity=0.117 Sum_probs=64.7
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHC-CCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHh-hccCC
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKR-GDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKL-FDVVP 193 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~-~~~~~ 193 (469)
..+|+|.|.||||++|..|++.|.++ +.+|+.+.+..+.. +.+. ........+|+.+.+.++.. ++++
T Consensus 36 ~~~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~~saG-~~i~--------~~~~~l~~~~~~~~~~~~~~~~~~~- 105 (381)
T PLN02968 36 EEKKRIFVLGASGYTGAEVRRLLANHPDFEITVMTADRKAG-QSFG--------SVFPHLITQDLPNLVAVKDADFSDV- 105 (381)
T ss_pred ccccEEEEECCCChHHHHHHHHHHhCCCCeEEEEEChhhcC-CCch--------hhCccccCccccceecCCHHHhcCC-
Confidence 35679999999999999999999999 67999988733211 0000 00112222344333333322 4666
Q ss_pred ccEEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcCccccCC
Q 012176 194 FTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGL 251 (469)
Q Consensus 194 ~d~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS~~vyg~ 251 (469)
|+||-+.+.. ....++.++ +.|. ++|-.|+..-+.+
T Consensus 106 -DvVf~Alp~~------------------~s~~i~~~~-~~g~--~VIDlSs~fRl~~ 141 (381)
T PLN02968 106 -DAVFCCLPHG------------------TTQEIIKAL-PKDL--KIVDLSADFRLRD 141 (381)
T ss_pred -CEEEEcCCHH------------------HHHHHHHHH-hCCC--EEEEcCchhccCC
Confidence 9999977541 345566655 3453 7999998776543
|
|
| >PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.00067 Score=61.70 Aligned_cols=67 Identities=18% Similarity=0.210 Sum_probs=40.9
Q ss_pred cCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHH----HHHhhccCCccEEEEc
Q 012176 125 GAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPL----LTKLFDVVPFTHVLHL 200 (469)
Q Consensus 125 GatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~----l~~~~~~~~~d~Vih~ 200 (469)
-.||-.|.+|++++..+|++|+.+..... . . ...++..+... ..++ +.+.++.+ |++||+
T Consensus 26 ~SSG~~G~~lA~~~~~~Ga~V~li~g~~~-~----~-------~p~~~~~i~v~--sa~em~~~~~~~~~~~--Di~I~a 89 (185)
T PF04127_consen 26 RSSGKMGAALAEEAARRGAEVTLIHGPSS-L----P-------PPPGVKVIRVE--SAEEMLEAVKELLPSA--DIIIMA 89 (185)
T ss_dssp S--SHHHHHHHHHHHHTT-EEEEEE-TTS----------------TTEEEEE-S--SHHHHHHHHHHHGGGG--SEEEE-
T ss_pred CCcCHHHHHHHHHHHHCCCEEEEEecCcc-c----c-------ccccceEEEec--chhhhhhhhccccCcc--eeEEEe
Confidence 45789999999999999999999987421 0 0 02367666643 3333 44555566 999999
Q ss_pred ccccChh
Q 012176 201 AAQAGVR 207 (469)
Q Consensus 201 Aa~~~~~ 207 (469)
||..+..
T Consensus 90 AAVsDf~ 96 (185)
T PF04127_consen 90 AAVSDFR 96 (185)
T ss_dssp SB--SEE
T ss_pred cchhhee
Confidence 9986543
|
These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A. |
| >PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0017 Score=67.78 Aligned_cols=76 Identities=28% Similarity=0.272 Sum_probs=54.9
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCcc
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFT 195 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~d 195 (469)
.++|+|+|+|+++ +|..+++.|+++|++|+++++.... ....... .+...++.++.+|..| ....+. |
T Consensus 3 ~~~k~v~iiG~g~-~G~~~A~~l~~~G~~V~~~d~~~~~---~~~~~~~-~l~~~~~~~~~~~~~~-----~~~~~~--d 70 (450)
T PRK14106 3 LKGKKVLVVGAGV-SGLALAKFLKKLGAKVILTDEKEED---QLKEALE-ELGELGIELVLGEYPE-----EFLEGV--D 70 (450)
T ss_pred cCCCEEEEECCCH-HHHHHHHHHHHCCCEEEEEeCCchH---HHHHHHH-HHHhcCCEEEeCCcch-----hHhhcC--C
Confidence 4678999999866 9999999999999999999985421 1111112 2233478888888876 233444 9
Q ss_pred EEEEcccc
Q 012176 196 HVLHLAAQ 203 (469)
Q Consensus 196 ~Vih~Aa~ 203 (469)
+||+++|.
T Consensus 71 ~vv~~~g~ 78 (450)
T PRK14106 71 LVVVSPGV 78 (450)
T ss_pred EEEECCCC
Confidence 99999886
|
|
| >PRK05442 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0034 Score=62.41 Aligned_cols=171 Identities=16% Similarity=0.123 Sum_probs=99.2
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCC-------cEEEEeCCCCC--CCh---hHHHHHHHhhccCCeEEEEecCCCHHH
Q 012176 117 NGMTVLVTGAAGFVGSHCSLALKKRGD-------GVLGLDNFNSY--YDP---SLKRARQKLLQKHQVFIVEGDLNDAPL 184 (469)
Q Consensus 117 ~~~~VlVtGatG~IG~~l~~~L~~~G~-------~V~~~~r~~~~--~~~---~~~~~~~~~~~~~~v~~v~~Dl~d~~~ 184 (469)
+.++|.|+|++|.+|..++..|...|. ++.++|+.+.. ... ++........ ..+.+..+
T Consensus 3 ~~~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~--~~~~i~~~------- 73 (326)
T PRK05442 3 APVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLL--AGVVITDD------- 73 (326)
T ss_pred CCcEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhhhhhhhhc--CCcEEecC-------
Confidence 456999999999999999999987653 78999885421 111 1111110111 13333221
Q ss_pred HHHhhccCCccEEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcC-CCCeEEEEcCcc---ccCCCCCCCCCCC
Q 012176 185 LTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVN-PQPSIVWASSSS---VYGLNTQVPFSES 260 (469)
Q Consensus 185 l~~~~~~~~~d~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~-~~~~~V~~SS~~---vyg~~~~~~~~E~ 260 (469)
..+.++++ |+||-+||... -...+..+.+..|..-.+.+....+++. ....+|.+|-.. .|-. .+.
T Consensus 74 ~y~~~~da--DiVVitaG~~~--k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPvDv~t~v~------~k~ 143 (326)
T PRK05442 74 PNVAFKDA--DVALLVGARPR--GPGMERKDLLEANGAIFTAQGKALNEVAARDVKVLVVGNPANTNALIA------MKN 143 (326)
T ss_pred hHHHhCCC--CEEEEeCCCCC--CCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeCCchHHHHHHH------HHH
Confidence 13456677 99999999632 2235677889999999999999998854 454677776311 0000 000
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHhCCcEEEEeecceecCCCC
Q 012176 261 HRTDQPASLYAATKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGR 306 (469)
Q Consensus 261 ~~~~~p~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~Gp~~~ 306 (469)
.+-.++....|.+-+..-++-..+++..+++..-++-..|+|..++
T Consensus 144 s~g~p~~rViG~t~LDs~R~r~~la~~l~v~~~~V~~~vV~GeHG~ 189 (326)
T PRK05442 144 APDLPAENFTAMTRLDHNRALSQLAAKAGVPVADIKKMTVWGNHSA 189 (326)
T ss_pred cCCCCHHHEEeeeHHHHHHHHHHHHHHhCcChHHeEEeEEEECCcC
Confidence 0000111122223333334444455666887777766667886544
|
|
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0027 Score=66.32 Aligned_cols=73 Identities=21% Similarity=0.301 Sum_probs=57.8
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHh-hccCCccEE
Q 012176 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKL-FDVVPFTHV 197 (469)
Q Consensus 119 ~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~-~~~~~~d~V 197 (469)
|+|+|+|+ |.+|+++++.|.+.|++|++++++.+ . .....+..++.++.||.++.+.++++ ++.+ |+|
T Consensus 1 m~viIiG~-G~ig~~~a~~L~~~g~~v~vid~~~~-------~-~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~a--~~v 69 (453)
T PRK09496 1 MKIIIVGA-GQVGYTLAENLSGENNDVTVIDTDEE-------R-LRRLQDRLDVRTVVGNGSSPDVLREAGAEDA--DLL 69 (453)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCcEEEEECCHH-------H-HHHHHhhcCEEEEEeCCCCHHHHHHcCCCcC--CEE
Confidence 68999997 99999999999999999999998432 1 11111224789999999999999888 7766 988
Q ss_pred EEccc
Q 012176 198 LHLAA 202 (469)
Q Consensus 198 ih~Aa 202 (469)
|-+..
T Consensus 70 i~~~~ 74 (453)
T PRK09496 70 IAVTD 74 (453)
T ss_pred EEecC
Confidence 87764
|
|
| >PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.005 Score=51.27 Aligned_cols=95 Identities=22% Similarity=0.258 Sum_probs=64.3
Q ss_pred EEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCccEEEEc
Q 012176 121 VLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTHVLHL 200 (469)
Q Consensus 121 VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~d~Vih~ 200 (469)
|+|.|. |-+|..+++.|.+.+.+|++++++.+ ....+...++.++.||.+|++.++++=-. +.+.||-+
T Consensus 1 vvI~G~-g~~~~~i~~~L~~~~~~vvvid~d~~---------~~~~~~~~~~~~i~gd~~~~~~l~~a~i~-~a~~vv~~ 69 (116)
T PF02254_consen 1 VVIIGY-GRIGREIAEQLKEGGIDVVVIDRDPE---------RVEELREEGVEVIYGDATDPEVLERAGIE-KADAVVIL 69 (116)
T ss_dssp EEEES--SHHHHHHHHHHHHTTSEEEEEESSHH---------HHHHHHHTTSEEEES-TTSHHHHHHTTGG-CESEEEEE
T ss_pred eEEEcC-CHHHHHHHHHHHhCCCEEEEEECCcH---------HHHHHHhcccccccccchhhhHHhhcCcc-ccCEEEEc
Confidence 578886 89999999999997779999998322 22222334689999999999998876322 34888876
Q ss_pred ccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEE
Q 012176 201 AAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWA 243 (469)
Q Consensus 201 Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~ 243 (469)
... -.....++..+++.+...++|..
T Consensus 70 ~~~-----------------d~~n~~~~~~~r~~~~~~~ii~~ 95 (116)
T PF02254_consen 70 TDD-----------------DEENLLIALLARELNPDIRIIAR 95 (116)
T ss_dssp SSS-----------------HHHHHHHHHHHHHHTTTSEEEEE
T ss_pred cCC-----------------HHHHHHHHHHHHHHCCCCeEEEE
Confidence 642 22344566667775554466644
|
The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A .... |
| >PTZ00117 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0037 Score=62.13 Aligned_cols=118 Identities=14% Similarity=0.143 Sum_probs=77.8
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCC-CcEEEEeCCCCCCChhHHHHHHHhhc--cCCeEEEEecCCCHHHHHHhhccC
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRG-DGVLGLDNFNSYYDPSLKRARQKLLQ--KHQVFIVEGDLNDAPLLTKLFDVV 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~--~~~v~~v~~Dl~d~~~l~~~~~~~ 192 (469)
.+.++|.|+|| |.+|..++..|...| .+|+++|++.+..... ......... .....+. + -+| ++ .++++
T Consensus 3 ~~~~KI~IIGa-G~vG~~ia~~l~~~~~~~l~L~Di~~~~~~g~-~lDl~~~~~~~~~~~~i~-~-~~d---~~-~l~~A 74 (319)
T PTZ00117 3 VKRKKISMIGA-GQIGSTVALLILQKNLGDVVLYDVIKGVPQGK-ALDLKHFSTLVGSNINIL-G-TNN---YE-DIKDS 74 (319)
T ss_pred CCCcEEEEECC-CHHHHHHHHHHHHCCCCeEEEEECCCccchhH-HHHHhhhccccCCCeEEE-e-CCC---HH-HhCCC
Confidence 35679999997 999999999999888 6899999866543211 111111101 1112222 1 122 44 56778
Q ss_pred CccEEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcC
Q 012176 193 PFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASS 245 (469)
Q Consensus 193 ~~d~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS 245 (469)
|+||-++|... .......+....|..-.+.+++.+.+......+|++|-
T Consensus 75 --DiVVitag~~~--~~g~~r~dll~~n~~i~~~i~~~i~~~~p~a~vivvsN 123 (319)
T PTZ00117 75 --DVVVITAGVQR--KEEMTREDLLTINGKIMKSVAESVKKYCPNAFVICVTN 123 (319)
T ss_pred --CEEEECCCCCC--CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 99999998632 22345567888899989999999888876645777764
|
|
| >PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.003 Score=71.31 Aligned_cols=77 Identities=23% Similarity=0.202 Sum_probs=57.3
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCC-Cc-------------EEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCH
Q 012176 117 NGMTVLVTGAAGFVGSHCSLALKKRG-DG-------------VLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDA 182 (469)
Q Consensus 117 ~~~~VlVtGatG~IG~~l~~~L~~~G-~~-------------V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~ 182 (469)
.+++|+|.|+ |+||+.+++.|.+.. .+ |++.++.. .+...-....+++..+..|+.|.
T Consensus 568 ~~~rIlVLGA-G~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~-------~~a~~la~~~~~~~~v~lDv~D~ 639 (1042)
T PLN02819 568 KSQNVLILGA-GRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYL-------KDAKETVEGIENAEAVQLDVSDS 639 (1042)
T ss_pred cCCcEEEECC-CHHHHHHHHHHHhCcCccccccccccccccEEEEECCCH-------HHHHHHHHhcCCCceEEeecCCH
Confidence 4679999997 999999999998763 33 77777632 22111111123778899999999
Q ss_pred HHHHHhhccCCccEEEEcccc
Q 012176 183 PLLTKLFDVVPFTHVLHLAAQ 203 (469)
Q Consensus 183 ~~l~~~~~~~~~d~Vih~Aa~ 203 (469)
+++.++++++ |+||++...
T Consensus 640 e~L~~~v~~~--DaVIsalP~ 658 (1042)
T PLN02819 640 ESLLKYVSQV--DVVISLLPA 658 (1042)
T ss_pred HHHHHhhcCC--CEEEECCCc
Confidence 9999998887 999999854
|
|
| >PLN00112 malate dehydrogenase (NADP); Provisional | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0045 Score=63.77 Aligned_cols=172 Identities=14% Similarity=0.105 Sum_probs=103.6
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHC-------CC--cEEEEeCCCCCCChhHHHHHHHh-hccCCeEEEEecCCCHHHHHH
Q 012176 118 GMTVLVTGAAGFVGSHCSLALKKR-------GD--GVLGLDNFNSYYDPSLKRARQKL-LQKHQVFIVEGDLNDAPLLTK 187 (469)
Q Consensus 118 ~~~VlVtGatG~IG~~l~~~L~~~-------G~--~V~~~~r~~~~~~~~~~~~~~~~-~~~~~v~~v~~Dl~d~~~l~~ 187 (469)
.-+|.|+|++|.||.+++-.|+.. |. +++.+++..+............. .....+.+..+ |. +
T Consensus 100 ~~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~~~~~~v~i~~~---~y----e 172 (444)
T PLN00112 100 LINVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSLYPLLREVSIGID---PY----E 172 (444)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhhhhcCceEEecC---CH----H
Confidence 459999999999999999999987 54 78888886654332211111111 00113322222 22 3
Q ss_pred hhccCCccEEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHh-cCCCCeEEEEcCcc---ccCCCCCCCCCCCCCC
Q 012176 188 LFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKS-VNPQPSIVWASSSS---VYGLNTQVPFSESHRT 263 (469)
Q Consensus 188 ~~~~~~~d~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~-~~~~~~~V~~SS~~---vyg~~~~~~~~E~~~~ 263 (469)
.++++ |+||-.||.. +-...+..+.++.|+.-.+.+.....+ ++....+|.+|-.. .|- .-+....
T Consensus 173 ~~kda--DiVVitAG~p--rkpG~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVsNPvDv~t~v------~~k~sg~ 242 (444)
T PLN00112 173 VFQDA--EWALLIGAKP--RGPGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVGNPCNTNALI------CLKNAPN 242 (444)
T ss_pred HhCcC--CEEEECCCCC--CCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcCCcHHHHHHH------HHHHcCC
Confidence 56677 9999999973 223356678999999999999999998 57665677776421 000 0000000
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHhCCcEEEEeecceecCCCC
Q 012176 264 DQPASLYAATKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGR 306 (469)
Q Consensus 264 ~~p~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~Gp~~~ 306 (469)
......=..+.+..-++-..+++..+++..-|.-.+|+|..++
T Consensus 243 ~~~rViGtgT~LDsaR~r~~LA~~l~V~~~~V~~~~V~GeHGd 285 (444)
T PLN00112 243 IPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNVTIWGNHST 285 (444)
T ss_pred CCcceEEeeccHHHHHHHHHHHHHhCcCHHHcccceEEecCCC
Confidence 0111111223333444445556667888888877888896554
|
|
| >TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0054 Score=56.77 Aligned_cols=112 Identities=21% Similarity=0.217 Sum_probs=70.2
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCC-cEEEEeCCCCCCC--------------hhHHHHHHHhhc----cCCeEEEE
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGD-GVLGLDNFNSYYD--------------PSLKRARQKLLQ----KHQVFIVE 176 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~-~V~~~~r~~~~~~--------------~~~~~~~~~~~~----~~~v~~v~ 176 (469)
....+|+|.|+ |.+|.++++.|...|. +++++|...-... ..+.....+.+. .-.++.+.
T Consensus 19 l~~~~VlviG~-GglGs~ia~~La~~Gv~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~~ 97 (202)
T TIGR02356 19 LLNSHVLIIGA-GGLGSPAALYLAGAGVGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELNSDIQVTALK 97 (202)
T ss_pred hcCCCEEEECC-CHHHHHHHHHHHHcCCCeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhCCCCEEEEeh
Confidence 56678999995 9999999999999996 7888887531100 011111111111 12344444
Q ss_pred ecCCCHHHHHHhhccCCccEEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcCccccC
Q 012176 177 GDLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYG 250 (469)
Q Consensus 177 ~Dl~d~~~l~~~~~~~~~d~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS~~vyg 250 (469)
.++. .+.+.+.++++ |+||.+... ...-..+-+.|++.+. .+|+.+..+.+|
T Consensus 98 ~~i~-~~~~~~~~~~~--D~Vi~~~d~-----------------~~~r~~l~~~~~~~~i--p~i~~~~~g~~G 149 (202)
T TIGR02356 98 ERVT-AENLELLINNV--DLVLDCTDN-----------------FATRYLINDACVALGT--PLISAAVVGFGG 149 (202)
T ss_pred hcCC-HHHHHHHHhCC--CEEEECCCC-----------------HHHHHHHHHHHHHcCC--CEEEEEeccCeE
Confidence 4443 45677788877 999998642 2223446678888886 488877655554
|
coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli. |
| >PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0041 Score=52.52 Aligned_cols=97 Identities=16% Similarity=0.102 Sum_probs=53.4
Q ss_pred EEEEEcCCChhHHHHHHHHHHCC-CcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCccEEE
Q 012176 120 TVLVTGAAGFVGSHCSLALKKRG-DGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTHVL 198 (469)
Q Consensus 120 ~VlVtGatG~IG~~l~~~L~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~d~Vi 198 (469)
||.|+||||++|+.|++.|.++- .++..+.......................+.+. | .+.+.+ +++ |+||
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--~-~~~~~~----~~~--Dvvf 71 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLSEVFPHPKGFEDLSVE--D-ADPEEL----SDV--DVVF 71 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHHTTGGGTTTEEEBEE--E-TSGHHH----TTE--SEEE
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeeehhccccccccceeEe--e-cchhHh----hcC--CEEE
Confidence 68999999999999999999963 354444333321122222211111111112222 2 333333 555 9999
Q ss_pred EcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcC
Q 012176 199 HLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASS 245 (469)
Q Consensus 199 h~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS 245 (469)
.+.+. .....+...+.+.|. .+|=.|+
T Consensus 72 ~a~~~------------------~~~~~~~~~~~~~g~--~ViD~s~ 98 (121)
T PF01118_consen 72 LALPH------------------GASKELAPKLLKAGI--KVIDLSG 98 (121)
T ss_dssp E-SCH------------------HHHHHHHHHHHHTTS--EEEESSS
T ss_pred ecCch------------------hHHHHHHHHHhhCCc--EEEeCCH
Confidence 99754 124556666677776 5666665
|
This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C .... |
| >COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0072 Score=59.23 Aligned_cols=115 Identities=19% Similarity=0.154 Sum_probs=75.1
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCC--CcEEEEeCCCCCCChhHHHHHHH-hhccCCeEEEEecCCCHHHHHHhhccCCcc
Q 012176 119 MTVLVTGAAGFVGSHCSLALKKRG--DGVLGLDNFNSYYDPSLKRARQK-LLQKHQVFIVEGDLNDAPLLTKLFDVVPFT 195 (469)
Q Consensus 119 ~~VlVtGatG~IG~~l~~~L~~~G--~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~d 195 (469)
++|.|+|+ |+||+.++-.|+.++ .+++++++.+............. ......+.+ .+| .| -+.++++ |
T Consensus 1 ~KVaviGa-G~VG~s~a~~l~~~~~~~el~LiDi~~~~~~G~a~DL~~~~~~~~~~~~i-~~~-~~----y~~~~~a--D 71 (313)
T COG0039 1 MKVAVIGA-GNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVALDLSHAAAPLGSDVKI-TGD-GD----YEDLKGA--D 71 (313)
T ss_pred CeEEEECC-ChHHHHHHHHHhcccccceEEEEEcccccccchhcchhhcchhccCceEE-ecC-CC----hhhhcCC--C
Confidence 57999999 999999999998774 58999998743222111110000 001112222 222 22 2456677 9
Q ss_pred EEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEc
Q 012176 196 HVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWAS 244 (469)
Q Consensus 196 ~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~S 244 (469)
+|+-.||. ++-+-....+.++.|..-...+.....+.+....|+.+|
T Consensus 72 iVvitAG~--prKpGmtR~DLl~~Na~I~~~i~~~i~~~~~d~ivlVvt 118 (313)
T COG0039 72 IVVITAGV--PRKPGMTRLDLLEKNAKIVKDIAKAIAKYAPDAIVLVVT 118 (313)
T ss_pred EEEEeCCC--CCCCCCCHHHHHHhhHHHHHHHHHHHHhhCCCeEEEEec
Confidence 99999987 332334667899999999999999998888764666665
|
|
| >PRK06223 malate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0047 Score=61.07 Aligned_cols=117 Identities=15% Similarity=0.078 Sum_probs=73.3
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHCCC-cEEEEeCCCCCCChhHHHHHHHhh-ccCCeEEEEecCCCHHHHHHhhccCCcc
Q 012176 118 GMTVLVTGAAGFVGSHCSLALKKRGD-GVLGLDNFNSYYDPSLKRARQKLL-QKHQVFIVEGDLNDAPLLTKLFDVVPFT 195 (469)
Q Consensus 118 ~~~VlVtGatG~IG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~-~~~~v~~v~~Dl~d~~~l~~~~~~~~~d 195 (469)
+|+|.|+|| |.+|..++..++..|. +|+++|+.++.............. ......+.. -+| ++ .++++ |
T Consensus 2 ~~KI~VIGa-G~vG~~ia~~la~~~~~ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~~--~~d---~~-~~~~a--D 72 (307)
T PRK06223 2 RKKISIIGA-GNVGATLAHLLALKELGDVVLFDIVEGVPQGKALDIAEAAPVEGFDTKITG--TND---YE-DIAGS--D 72 (307)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCeEEEEEECCCchhHHHHHHHHhhhhhcCCCcEEEe--CCC---HH-HHCCC--C
Confidence 378999998 9999999999998875 999999965532211111001100 011122211 122 32 36777 9
Q ss_pred EEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcC
Q 012176 196 HVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASS 245 (469)
Q Consensus 196 ~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS 245 (469)
+||.+++... ....+..+....|+.-...+++...+......+|.++-
T Consensus 73 iVii~~~~p~--~~~~~r~~~~~~n~~i~~~i~~~i~~~~~~~~viv~tN 120 (307)
T PRK06223 73 VVVITAGVPR--KPGMSRDDLLGINAKIMKDVAEGIKKYAPDAIVIVVTN 120 (307)
T ss_pred EEEECCCCCC--CcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 9999988632 12234456677899889999988887776545776653
|
|
| >TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.004 Score=61.48 Aligned_cols=115 Identities=17% Similarity=0.080 Sum_probs=76.8
Q ss_pred EEEEEcCCChhHHHHHHHHHHCCC--cEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCccEE
Q 012176 120 TVLVTGAAGFVGSHCSLALKKRGD--GVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTHV 197 (469)
Q Consensus 120 ~VlVtGatG~IG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~d~V 197 (469)
+|.|+|++|.||..++-.|...|. ++.++|+.+.. -..+ ...... ....+.... +.+++.+.++++ |+|
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~a~-g~a~--DL~~~~--~~~~i~~~~--~~~~~~~~~~da--Div 71 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAGAA-GVAA--DLSHIP--TAASVKGFS--GEEGLENALKGA--DVV 71 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCCCc-EEEc--hhhcCC--cCceEEEec--CCCchHHHcCCC--CEE
Confidence 589999999999999999988864 78999885511 0000 011100 112222101 112244678888 999
Q ss_pred EEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcC
Q 012176 198 LHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASS 245 (469)
Q Consensus 198 ih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS 245 (469)
|-+||.. +....+..+.+..|..-.+.+.+...+.+....+|.+|-
T Consensus 72 vitaG~~--~~~g~~R~dll~~N~~I~~~i~~~i~~~~p~~iiivvsN 117 (312)
T TIGR01772 72 VIPAGVP--RKPGMTRDDLFNVNAGIVKDLVAAVAESCPKAMILVITN 117 (312)
T ss_pred EEeCCCC--CCCCccHHHHHHHhHHHHHHHHHHHHHhCCCeEEEEecC
Confidence 9999973 223456678899999999999999988887756777764
|
Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases. |
| >PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0041 Score=53.63 Aligned_cols=75 Identities=17% Similarity=0.140 Sum_probs=51.5
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCc-EEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCc
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDG-VLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPF 194 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~ 194 (469)
.++++|+|.|+ |..|+.++..|.+.|.+ |+++.|..+ ..+..........+.++. .+++.+.+..+
T Consensus 10 l~~~~vlviGa-Gg~ar~v~~~L~~~g~~~i~i~nRt~~-----ra~~l~~~~~~~~~~~~~-----~~~~~~~~~~~-- 76 (135)
T PF01488_consen 10 LKGKRVLVIGA-GGAARAVAAALAALGAKEITIVNRTPE-----RAEALAEEFGGVNIEAIP-----LEDLEEALQEA-- 76 (135)
T ss_dssp GTTSEEEEESS-SHHHHHHHHHHHHTTSSEEEEEESSHH-----HHHHHHHHHTGCSEEEEE-----GGGHCHHHHTE--
T ss_pred cCCCEEEEECC-HHHHHHHHHHHHHcCCCEEEEEECCHH-----HHHHHHHHcCccccceee-----HHHHHHHHhhC--
Confidence 57899999997 99999999999999987 999999432 111222222223444444 23455667766
Q ss_pred cEEEEcccc
Q 012176 195 THVLHLAAQ 203 (469)
Q Consensus 195 d~Vih~Aa~ 203 (469)
|+||++.+.
T Consensus 77 DivI~aT~~ 85 (135)
T PF01488_consen 77 DIVINATPS 85 (135)
T ss_dssp SEEEE-SST
T ss_pred CeEEEecCC
Confidence 999999765
|
Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C .... |
| >KOG1494 consensus NAD-dependent malate dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.024 Score=53.85 Aligned_cols=121 Identities=21% Similarity=0.140 Sum_probs=75.4
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCcc
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFT 195 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~d 195 (469)
..+.+|.|.||.|.||+-|...|. ....|.-+....-...+......... .-.......+-++.++++++++ |
T Consensus 26 ~~~~KVAvlGAaGGIGQPLSLLlK-~np~Vs~LaLYDi~~~~GVaaDlSHI----~T~s~V~g~~g~~~L~~al~~a--d 98 (345)
T KOG1494|consen 26 QRGLKVAVLGAAGGIGQPLSLLLK-LNPLVSELALYDIANTPGVAADLSHI----NTNSSVVGFTGADGLENALKGA--D 98 (345)
T ss_pred cCcceEEEEecCCccCccHHHHHh-cCcccceeeeeecccCCccccccccc----CCCCceeccCChhHHHHHhcCC--C
Confidence 345689999999999999987665 44544333221100001111111100 1111111223356899999999 9
Q ss_pred EEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcC
Q 012176 196 HVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASS 245 (469)
Q Consensus 196 ~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS 245 (469)
+||-=||. ++-+--..++.+++|.--.+.|..++.+.-....+.++|-
T Consensus 99 vVvIPAGV--PRKPGMTRDDLFn~NAgIv~~l~~aia~~cP~A~i~vIsN 146 (345)
T KOG1494|consen 99 VVVIPAGV--PRKPGMTRDDLFNINAGIVKTLAAAIAKCCPNALILVISN 146 (345)
T ss_pred EEEecCCC--CCCCCCcHHHhhhcchHHHHHHHHHHHhhCccceeEeecC
Confidence 99999987 3333345578999999999999999888766646666663
|
|
| >cd05293 LDH_1 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.014 Score=57.88 Aligned_cols=116 Identities=17% Similarity=0.171 Sum_probs=76.5
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHCC--CcEEEEeCCCCCCChhHHHHHHHhhcc-CCeEEEEecCCCHHHHHHhhccCCc
Q 012176 118 GMTVLVTGAAGFVGSHCSLALKKRG--DGVLGLDNFNSYYDPSLKRARQKLLQK-HQVFIVEGDLNDAPLLTKLFDVVPF 194 (469)
Q Consensus 118 ~~~VlVtGatG~IG~~l~~~L~~~G--~~V~~~~r~~~~~~~~~~~~~~~~~~~-~~v~~v~~Dl~d~~~l~~~~~~~~~ 194 (469)
.++|.|+|+ |.||..++..|+..| .++.++|.+.+...... ......... ....+... .| ++. ++++
T Consensus 3 ~~Ki~IiGa-G~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a-~Dl~~~~~~~~~~~v~~~--~d---y~~-~~~a-- 72 (312)
T cd05293 3 RNKVTVVGV-GQVGMACAISILAKGLADELVLVDVVEDKLKGEA-MDLQHGSAFLKNPKIEAD--KD---YSV-TANS-- 72 (312)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHH-HHHHHhhccCCCCEEEEC--CC---HHH-hCCC--
Confidence 358999996 999999999998876 47999998654221111 111111100 11222221 22 332 6777
Q ss_pred cEEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcC
Q 012176 195 THVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASS 245 (469)
Q Consensus 195 d~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS 245 (469)
|+||-+||.... ...+..+.+..|+.-.+.+.+..++.+....+|.+|-
T Consensus 73 divvitaG~~~k--~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsN 121 (312)
T cd05293 73 KVVIVTAGARQN--EGESRLDLVQRNVDIFKGIIPKLVKYSPNAILLVVSN 121 (312)
T ss_pred CEEEECCCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEccC
Confidence 999999997332 2345668899999999999999999987767777763
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >cd05292 LDH_2 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0096 Score=58.90 Aligned_cols=114 Identities=20% Similarity=0.184 Sum_probs=74.2
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCC--CcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCccE
Q 012176 119 MTVLVTGAAGFVGSHCSLALKKRG--DGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTH 196 (469)
Q Consensus 119 ~~VlVtGatG~IG~~l~~~L~~~G--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~d~ 196 (469)
|+|.|.|+ |.+|..++..|+..| ++|.+++++................-.....+.. .|. +.++++ |+
T Consensus 1 mkI~IIGa-G~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~~---~d~----~~l~~a--Di 70 (308)
T cd05292 1 MKVAIVGA-GFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIYA---GDY----ADCKGA--DV 70 (308)
T ss_pred CEEEEECC-CHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHccccccCCeEEee---CCH----HHhCCC--CE
Confidence 57999997 999999999999999 6899999865422111000110000001222222 232 236777 99
Q ss_pred EEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEc
Q 012176 197 VLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWAS 244 (469)
Q Consensus 197 Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~S 244 (469)
||-+++.... ...+..+....|+.-.+.+++..++.+....++.++
T Consensus 71 Viita~~~~~--~~~~r~dl~~~n~~i~~~~~~~l~~~~~~giiiv~t 116 (308)
T cd05292 71 VVITAGANQK--PGETRLDLLKRNVAIFKEIIPQILKYAPDAILLVVT 116 (308)
T ss_pred EEEccCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 9999986321 224556778889999999999988887664566554
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.0056 Score=60.42 Aligned_cols=116 Identities=16% Similarity=0.129 Sum_probs=73.2
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCC-cEEEEeCCCCCCChhHHHHHHHhh-ccCCeEEEEecCCCHHHHHHhhccCCccE
Q 012176 119 MTVLVTGAAGFVGSHCSLALKKRGD-GVLGLDNFNSYYDPSLKRARQKLL-QKHQVFIVEGDLNDAPLLTKLFDVVPFTH 196 (469)
Q Consensus 119 ~~VlVtGatG~IG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~-~~~~v~~v~~Dl~d~~~l~~~~~~~~~d~ 196 (469)
|+|.|.|+ |++|..++..|+..|+ +|+++++.+............... ......+.. -+| +++ ++++ |+
T Consensus 2 ~KV~VIGa-G~vG~~iA~~la~~g~~~VvlvDi~~~l~~g~a~d~~~~~~~~~~~~~i~~--t~d---~~~-~~~a--Di 72 (305)
T TIGR01763 2 KKISVIGA-GFVGATTAFRLAEKELADLVLLDVVEGIPQGKALDMYEASPVGGFDTKVTG--TNN---YAD-TANS--DI 72 (305)
T ss_pred CEEEEECc-CHHHHHHHHHHHHcCCCeEEEEeCCCChhHHHHHhhhhhhhccCCCcEEEe--cCC---HHH-hCCC--CE
Confidence 68999997 9999999999999886 899999854311111000000000 111111111 022 333 5667 99
Q ss_pred EEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcC
Q 012176 197 VLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASS 245 (469)
Q Consensus 197 Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS 245 (469)
||-++|.... ...+..+.+..|+.-...+++...+.+....+|.+|-
T Consensus 73 VIitag~p~~--~~~sR~~l~~~N~~iv~~i~~~I~~~~p~~~iIv~tN 119 (305)
T TIGR01763 73 VVITAGLPRK--PGMSREDLLSMNAGIVREVTGRIMEHSPNPIIVVVSN 119 (305)
T ss_pred EEEcCCCCCC--cCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 9999986321 1234557888899999999999888776656777663
|
The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable. |
| >PRK14874 aspartate-semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0021 Score=64.39 Aligned_cols=93 Identities=22% Similarity=0.096 Sum_probs=58.4
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHCCCc---EEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCc
Q 012176 118 GMTVLVTGAAGFVGSHCSLALKKRGDG---VLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPF 194 (469)
Q Consensus 118 ~~~VlVtGatG~IG~~l~~~L~~~G~~---V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~ 194 (469)
+++|+|.||||++|+.|++.|.++||. +..+.+........ ...+..+...|+.+. .++++
T Consensus 1 ~~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~~~g~~l---------~~~g~~i~v~d~~~~-----~~~~v-- 64 (334)
T PRK14874 1 GYNVAVVGATGAVGREMLNILEERNFPVDKLRLLASARSAGKEL---------SFKGKELKVEDLTTF-----DFSGV-- 64 (334)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEccccCCCee---------eeCCceeEEeeCCHH-----HHcCC--
Confidence 468999999999999999999998875 47776643321111 011334555566432 23455
Q ss_pred cEEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcCc
Q 012176 195 THVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSS 246 (469)
Q Consensus 195 d~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS~ 246 (469)
|+||-+++.. .+..++....+.|. .+|=.|+.
T Consensus 65 DvVf~A~g~g------------------~s~~~~~~~~~~G~--~VIDlS~~ 96 (334)
T PRK14874 65 DIALFSAGGS------------------VSKKYAPKAAAAGA--VVIDNSSA 96 (334)
T ss_pred CEEEECCChH------------------HHHHHHHHHHhCCC--EEEECCch
Confidence 9999888652 13445555555665 56666654
|
|
| >cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.015 Score=50.48 Aligned_cols=107 Identities=21% Similarity=0.220 Sum_probs=66.3
Q ss_pred EEEEEcCCChhHHHHHHHHHHCCC-cEEEEeCCCCC--------------CChhHHHHHHHhh----ccCCeEEEEecCC
Q 012176 120 TVLVTGAAGFVGSHCSLALKKRGD-GVLGLDNFNSY--------------YDPSLKRARQKLL----QKHQVFIVEGDLN 180 (469)
Q Consensus 120 ~VlVtGatG~IG~~l~~~L~~~G~-~V~~~~r~~~~--------------~~~~~~~~~~~~~----~~~~v~~v~~Dl~ 180 (469)
+|+|.|+ |.+|..+++.|...|. +++++|...-. .-..+.....+.+ ..-.++.+..++.
T Consensus 1 ~VliiG~-GglGs~ia~~L~~~Gv~~i~ivD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~~p~v~i~~~~~~~~ 79 (143)
T cd01483 1 RVLLVGL-GGLGSEIALNLARSGVGKITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARRLNELNPGVNVTAVPEGIS 79 (143)
T ss_pred CEEEECC-CHHHHHHHHHHHHCCCCEEEEEcCCCcCcchhhccccCChhHCCChHHHHHHHHHHHHCCCcEEEEEeeecC
Confidence 4899997 9999999999999997 68888754210 0011111111111 1224555555554
Q ss_pred CHHHHHHhhccCCccEEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcCcccc
Q 012176 181 DAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVY 249 (469)
Q Consensus 181 d~~~l~~~~~~~~~d~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS~~vy 249 (469)
+.. ..+.++.. |+||.+... ......+.++|++.+. .+|..++.+.+
T Consensus 80 ~~~-~~~~~~~~--diVi~~~d~-----------------~~~~~~l~~~~~~~~i--~~i~~~~~g~~ 126 (143)
T cd01483 80 EDN-LDDFLDGV--DLVIDAIDN-----------------IAVRRALNRACKELGI--PVIDAGGLGLG 126 (143)
T ss_pred hhh-HHHHhcCC--CEEEECCCC-----------------HHHHHHHHHHHHHcCC--CEEEEcCCCcE
Confidence 433 35666666 999998753 2334567788999886 48887765543
|
This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. |
| >PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ] | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.0048 Score=52.36 Aligned_cols=90 Identities=20% Similarity=0.183 Sum_probs=54.9
Q ss_pred CEEEEEcCCChhHHHHHHHHHH-CCCcEEEE-eCCCCCCC-hhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCcc
Q 012176 119 MTVLVTGAAGFVGSHCSLALKK-RGDGVLGL-DNFNSYYD-PSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFT 195 (469)
Q Consensus 119 ~~VlVtGatG~IG~~l~~~L~~-~G~~V~~~-~r~~~~~~-~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~d 195 (469)
|+|.|.|++|-+|+.+++.+.+ .+.++.+. +|..+... +...... . ....++.+ .++++++++.+ |
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~-~-~~~~~~~v-------~~~l~~~~~~~--D 69 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELA-G-IGPLGVPV-------TDDLEELLEEA--D 69 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHC-T-SST-SSBE-------BS-HHHHTTH---S
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhh-C-cCCccccc-------chhHHHhcccC--C
Confidence 5899999999999999999999 57776554 55442111 1111000 0 00111111 24577888875 9
Q ss_pred EEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCC
Q 012176 196 HVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQ 237 (469)
Q Consensus 196 ~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~ 237 (469)
+||++. +-..+...++.|.+++..
T Consensus 70 VvIDfT------------------~p~~~~~~~~~~~~~g~~ 93 (124)
T PF01113_consen 70 VVIDFT------------------NPDAVYDNLEYALKHGVP 93 (124)
T ss_dssp EEEEES-------------------HHHHHHHHHHHHHHT-E
T ss_pred EEEEcC------------------ChHHhHHHHHHHHhCCCC
Confidence 999987 234567788888888863
|
In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A .... |
| >PRK08644 thiamine biosynthesis protein ThiF; Provisional | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.014 Score=54.33 Aligned_cols=112 Identities=21% Similarity=0.171 Sum_probs=69.7
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCc-EEEEeCCCCC---CC------h----hHHHHHHHh----hccCCeEEEEe
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDG-VLGLDNFNSY---YD------P----SLKRARQKL----LQKHQVFIVEG 177 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~-V~~~~r~~~~---~~------~----~~~~~~~~~----~~~~~v~~v~~ 177 (469)
....+|+|.|+ |.+|..+++.|.+.|.. ++++|...-. .. . .+....... ...-.++.+..
T Consensus 26 L~~~~V~ViG~-GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~dvG~~Ka~~a~~~l~~lnp~v~v~~~~~ 104 (212)
T PRK08644 26 LKKAKVGIAGA-GGLGSNIAVALARSGVGNLKLVDFDVVEPSNLNRQQYFISQIGMPKVEALKENLLEINPFVEIEAHNE 104 (212)
T ss_pred HhCCCEEEECc-CHHHHHHHHHHHHcCCCeEEEEeCCEeccccccccEeehhhCCChHHHHHHHHHHHHCCCCEEEEEee
Confidence 45678999996 99999999999999974 8888765210 00 0 011111111 11224555655
Q ss_pred cCCCHHHHHHhhccCCccEEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhc-CCCCeEEEEcCccccC
Q 012176 178 DLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSV-NPQPSIVWASSSSVYG 250 (469)
Q Consensus 178 Dl~d~~~l~~~~~~~~~d~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~-~~~~~~V~~SS~~vyg 250 (469)
.+++ +.+.++++++ |+||.+.- |...-..+.+.|.+. +. .+|+.+..+.|+
T Consensus 105 ~i~~-~~~~~~~~~~--DvVI~a~D-----------------~~~~r~~l~~~~~~~~~~--p~I~~~~~~~~~ 156 (212)
T PRK08644 105 KIDE-DNIEELFKDC--DIVVEAFD-----------------NAETKAMLVETVLEHPGK--KLVAASGMAGYG 156 (212)
T ss_pred ecCH-HHHHHHHcCC--CEEEECCC-----------------CHHHHHHHHHHHHHhCCC--CEEEeehhhccC
Confidence 5654 5567788877 99999852 223334566777777 65 478776555554
|
|
| >PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.0012 Score=65.34 Aligned_cols=34 Identities=24% Similarity=0.375 Sum_probs=31.1
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCC
Q 012176 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNS 153 (469)
Q Consensus 119 ~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~ 153 (469)
|+|.|+| .|.+|..++..|+++|++|++.+|..+
T Consensus 3 ~~V~VIG-~G~mG~~iA~~la~~G~~V~v~d~~~~ 36 (308)
T PRK06129 3 GSVAIIG-AGLIGRAWAIVFARAGHEVRLWDADPA 36 (308)
T ss_pred cEEEEEC-ccHHHHHHHHHHHHCCCeeEEEeCCHH
Confidence 5799999 699999999999999999999999654
|
|
| >cd05295 MDH_like Malate dehydrogenase-like | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.024 Score=58.49 Aligned_cols=171 Identities=13% Similarity=0.051 Sum_probs=100.6
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHC---CC----cEEEEeCCCCCCChhHHHHHHHhhc-----cCCeEEEEecCCCHH
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKR---GD----GVLGLDNFNSYYDPSLKRARQKLLQ-----KHQVFIVEGDLNDAP 183 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~---G~----~V~~~~r~~~~~~~~~~~~~~~~~~-----~~~v~~v~~Dl~d~~ 183 (469)
.+..+|+||||+|.||.+|+-.++.- |. .+++++... ..+.+.....++.+ ...+.+.. | +
T Consensus 121 ~~p~~V~vtgAag~i~Y~l~~~ia~G~~fG~~~~v~L~LlDi~~--~~~~l~G~amDL~D~a~pll~~v~i~~-~--~-- 193 (452)
T cd05295 121 INPLQVCITNASAPLCYHLIPSLASGEVFGMEEEISIHLLDSPE--NLEKLKGLVMEVEDLAFPLLRGISVTT-D--L-- 193 (452)
T ss_pred CCceEEEEecCcHHHHHHHHHHHhCCcccCCCCeEEEEEEcCCC--chhhHHHHHHHHHHhHHhhcCCcEEEE-C--C--
Confidence 34579999999999999999998873 42 355555521 11111211111111 11344432 2 1
Q ss_pred HHHHhhccCCccEEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCC--CCeEEEEcC-cc---ccCCCCCCCC
Q 012176 184 LLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNP--QPSIVWASS-SS---VYGLNTQVPF 257 (469)
Q Consensus 184 ~l~~~~~~~~~d~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~--~~~~V~~SS-~~---vyg~~~~~~~ 257 (469)
.+.|+++ |+||-+||.. +-...+..+..+.|..-.+.+..+..+.+. . +++.+.| .. .|- .
T Consensus 194 --~ea~~da--DvvIitag~p--rk~G~~R~DLL~~N~~Ifk~~g~~I~~~a~~~~-~VlVv~tNPvD~~t~i------~ 260 (452)
T cd05295 194 --DVAFKDA--HVIVLLDDFL--IKEGEDLEGCIRSRVAICQLYGPLIEKNAKEDV-KVIVAGRTFLNLKTSI------L 260 (452)
T ss_pred --HHHhCCC--CEEEECCCCC--CCcCCCHHHHHHHHHHHHHHHHHHHHHhCCCCC-eEEEEeCCcHHHHHHH------H
Confidence 3567778 9999999973 223346678899999999999999888776 4 5555543 11 000 0
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHHHHHHHhCCcEEEEeecceecCCCC
Q 012176 258 SESHRTDQPASLYAATKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGR 306 (469)
Q Consensus 258 ~E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~Gp~~~ 306 (469)
-...+..++....|.+.....++...+++..|++..-|+-.+|.|..+.
T Consensus 261 ~k~apgiP~~rVig~gtlds~R~r~~LA~kl~V~~~~V~~~~VwGeHG~ 309 (452)
T cd05295 261 IKYAPSIPRKNIIAVARLQENRAKALLARKLNVNSAGIKDVIVWGNIGG 309 (452)
T ss_pred HHHcCCCCHHHEEEecchHHHHHHHHHHHHhCcCHHHceeeEEEEccCC
Confidence 0000001122233334444445555666777888888888888886444
|
These MDH-like proteins are related to other groups in the MDH family but do not have conserved substrate and cofactor binding residues. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subgroup are uncharacterized MDH-like proteins from animals. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.014 Score=50.25 Aligned_cols=110 Identities=22% Similarity=0.282 Sum_probs=69.8
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHCCC-cEEEEeCCCCC--------C--C----hhHHHHHHHhh----ccCCeEEEEec
Q 012176 118 GMTVLVTGAAGFVGSHCSLALKKRGD-GVLGLDNFNSY--------Y--D----PSLKRARQKLL----QKHQVFIVEGD 178 (469)
Q Consensus 118 ~~~VlVtGatG~IG~~l~~~L~~~G~-~V~~~~r~~~~--------~--~----~~~~~~~~~~~----~~~~v~~v~~D 178 (469)
.++|+|.|+ |.+|..+++.|...|. +++++|...-. . . ..+.....+.+ ..-.+..+..+
T Consensus 2 ~~~v~iiG~-G~vGs~va~~L~~~Gv~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~np~~~v~~~~~~ 80 (135)
T PF00899_consen 2 NKRVLIIGA-GGVGSEVAKNLARSGVGKITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQEINPDVEVEAIPEK 80 (135)
T ss_dssp T-EEEEEST-SHHHHHHHHHHHHHTTSEEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHHHSTTSEEEEEESH
T ss_pred CCEEEEECc-CHHHHHHHHHHHHhCCCceeecCCcceeecccccccccccccchhHHHHHHHHHHHHhcCceeeeeeecc
Confidence 368999996 9999999999999997 57777632210 0 0 11111111111 12256666666
Q ss_pred CCCHHHHHHhhccCCccEEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcCccccC
Q 012176 179 LNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYG 250 (469)
Q Consensus 179 l~d~~~l~~~~~~~~~d~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS~~vyg 250 (469)
+ +.+.+.++++++ |+||.+... ...-..+.+.|++.+. .+|+.+..+.+|
T Consensus 81 ~-~~~~~~~~~~~~--d~vi~~~d~-----------------~~~~~~l~~~~~~~~~--p~i~~~~~g~~G 130 (135)
T PF00899_consen 81 I-DEENIEELLKDY--DIVIDCVDS-----------------LAARLLLNEICREYGI--PFIDAGVNGFYG 130 (135)
T ss_dssp C-SHHHHHHHHHTS--SEEEEESSS-----------------HHHHHHHHHHHHHTT---EEEEEEEETTEE
T ss_pred c-ccccccccccCC--CEEEEecCC-----------------HHHHHHHHHHHHHcCC--CEEEEEeecCEE
Confidence 6 556778888877 999998643 2334567778988886 588877655544
|
Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A .... |
| >PLN02602 lactate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.024 Score=56.95 Aligned_cols=115 Identities=14% Similarity=0.119 Sum_probs=76.2
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCC--CcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCccE
Q 012176 119 MTVLVTGAAGFVGSHCSLALKKRG--DGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTH 196 (469)
Q Consensus 119 ~~VlVtGatG~IG~~l~~~L~~~G--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~d~ 196 (469)
++|.|+|+ |.||..++-.|+..| .++.++|.+++..............-.....+.. + .| ++ .++++ |+
T Consensus 38 ~KI~IIGa-G~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~~~~~~~~i~~-~-~d---y~-~~~da--Di 108 (350)
T PLN02602 38 TKVSVVGV-GNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAAAFLPRTKILA-S-TD---YA-VTAGS--DL 108 (350)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhhhcCCCCEEEe-C-CC---HH-HhCCC--CE
Confidence 69999996 999999999999876 4799999865432221111111100011232322 1 12 22 36777 99
Q ss_pred EEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEc
Q 012176 197 VLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWAS 244 (469)
Q Consensus 197 Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~S 244 (469)
||-+||... -...+..+.+..|+.-.+.+.+..++++....+|.+|
T Consensus 109 VVitAG~~~--k~g~tR~dll~~N~~I~~~i~~~I~~~~p~~ivivvt 154 (350)
T PLN02602 109 CIVTAGARQ--IPGESRLNLLQRNVALFRKIIPELAKYSPDTILLIVS 154 (350)
T ss_pred EEECCCCCC--CcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 999999732 2234566888999999999999999888776777776
|
|
| >cd05290 LDH_3 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.025 Score=55.79 Aligned_cols=167 Identities=16% Similarity=0.142 Sum_probs=96.3
Q ss_pred EEEEEcCCChhHHHHHHHHHHCCC--cEEEEeCCCCCCChhHHHHHHHh-hc-cCCeEEEEecCCCHHHHHHhhccCCcc
Q 012176 120 TVLVTGAAGFVGSHCSLALKKRGD--GVLGLDNFNSYYDPSLKRARQKL-LQ-KHQVFIVEGDLNDAPLLTKLFDVVPFT 195 (469)
Q Consensus 120 ~VlVtGatG~IG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~-~~-~~~v~~v~~Dl~d~~~l~~~~~~~~~d 195 (469)
+|.|.|+ |.||..++..|+..|. ++.++|..++............. .. ...+.+..+| . +.++++ |
T Consensus 1 Ki~IIGa-G~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~~~~---y----~~~~~a--D 70 (307)
T cd05290 1 KLVVIGA-GHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRAGD---Y----DDCADA--D 70 (307)
T ss_pred CEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEEECC---H----HHhCCC--C
Confidence 4789998 9999999999998864 79999985543222111111100 11 1234444433 2 356677 9
Q ss_pred EEEEcccccChhhhccC--hHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcCcc---ccCCCCCCCCCCCCCCCCCCChH
Q 012176 196 HVLHLAAQAGVRYAMQN--PQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSS---VYGLNTQVPFSESHRTDQPASLY 270 (469)
Q Consensus 196 ~Vih~Aa~~~~~~~~~~--~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS~~---vyg~~~~~~~~E~~~~~~p~~~Y 270 (469)
+||-.||.... ...+ ..+.+..|+.-.+.+....++++....+|.+|-.. .|-......+ ++.-..
T Consensus 71 ivvitaG~~~k--pg~tr~R~dll~~N~~I~~~i~~~i~~~~p~~i~ivvsNPvDv~t~~~~k~sg~-------p~~rvi 141 (307)
T cd05290 71 IIVITAGPSID--PGNTDDRLDLAQTNAKIIREIMGNITKVTKEAVIILITNPLDIAVYIAATEFDY-------PANKVI 141 (307)
T ss_pred EEEECCCCCCC--CCCCchHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecCcHHHHHHHHHHHhCc-------Chhhee
Confidence 99999997321 1123 47888999999999999999998775666665310 0000000000 111112
Q ss_pred HH-HHHHHHHHHHHHHHHhCCcEEEEeecceecCCCC
Q 012176 271 AA-TKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGR 306 (469)
Q Consensus 271 ~~-sK~~~E~~~~~~~~~~gi~~~ilRp~~v~Gp~~~ 306 (469)
|. +-+..-++-..+++..+++..-++-. |.|..++
T Consensus 142 G~gt~LDs~R~~~~la~~l~v~~~~V~~~-ViGeHGd 177 (307)
T cd05290 142 GTGTMLDTARLRRIVADKYGVDPKNVTGY-VLGEHGS 177 (307)
T ss_pred cccchHHHHHHHHHHHHHhCCCcccEEEE-EEecCCC
Confidence 22 22333344445555668887777654 7886543
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >KOG1202 consensus Animal-type fatty acid synthase and related proteins [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.0064 Score=67.42 Aligned_cols=169 Identities=18% Similarity=0.169 Sum_probs=110.3
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCcE-EEEeCCCCCCChhHHHHHHHhhccCCe--EEEEecCCCHHHHHHhhccC-
Q 012176 117 NGMTVLVTGAAGFVGSHCSLALKKRGDGV-LGLDNFNSYYDPSLKRARQKLLQKHQV--FIVEGDLNDAPLLTKLFDVV- 192 (469)
Q Consensus 117 ~~~~VlVtGatG~IG~~l~~~L~~~G~~V-~~~~r~~~~~~~~~~~~~~~~~~~~~v--~~v~~Dl~d~~~l~~~~~~~- 192 (469)
..|..+|+||-|..|-.|++-|..+|.+- +...|..-.. .-....-+.+...+| .+-.-|++..+...++++.+
T Consensus 1767 peksYii~GGLGGFGLELaqWLi~RGar~lVLtSRsGirt--GYQa~~vrrWr~~GVqV~vsT~nitt~~ga~~Li~~s~ 1844 (2376)
T KOG1202|consen 1767 PEKSYIIVGGLGGFGLELAQWLIQRGARKLVLTSRSGIRT--GYQALMVRRWRRRGVQVQVSTSNITTAEGARGLIEESN 1844 (2376)
T ss_pred ccceEEEeccccchhHHHHHHHHhcCceEEEEeccccchh--hHHHHHHHHHHhcCeEEEEecccchhhhhHHHHHHHhh
Confidence 45789999999999999999999999854 4445533211 111111122233344 44455777777667777654
Q ss_pred ---CccEEEEcccccCh----hhhccChHHHHHHHHHHHHHHHHHHHhcCC-CCeEEEEcCccccCCCCCCCCCCCCCCC
Q 012176 193 ---PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCKSVNP-QPSIVWASSSSVYGLNTQVPFSESHRTD 264 (469)
Q Consensus 193 ---~~d~Vih~Aa~~~~----~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~-~~~~V~~SS~~vyg~~~~~~~~E~~~~~ 264 (469)
.+-.|||+|+.... +.+.++.++.-+.-+.||.+|=...++.-. ..-||.+||.+.--++
T Consensus 1845 kl~~vGGiFnLA~VLRD~LiEnQt~knFk~va~pK~~~Ti~LD~~sRe~C~~LdyFv~FSSvscGRGN------------ 1912 (2376)
T KOG1202|consen 1845 KLGPVGGIFNLAAVLRDGLIENQTPKNFKDVAKPKYSGTINLDRVSREICPELDYFVVFSSVSCGRGN------------ 1912 (2376)
T ss_pred hcccccchhhHHHHHHhhhhcccChhHHHhhhccceeeeeehhhhhhhhCcccceEEEEEeecccCCC------------
Confidence 45678999986221 223344555566677788888777665532 1368989986542222
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHhCCcEEEEeecce
Q 012176 265 QPASLYAATKKAGEEIAHTYNHIYGLALTGLRFFTV 300 (469)
Q Consensus 265 ~p~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v 300 (469)
..++.||.+-.++|+++.+-.+ +|++-+.|--|.|
T Consensus 1913 ~GQtNYG~aNS~MERiceqRr~-~GfPG~AiQWGAI 1947 (2376)
T KOG1202|consen 1913 AGQTNYGLANSAMERICEQRRH-EGFPGTAIQWGAI 1947 (2376)
T ss_pred CcccccchhhHHHHHHHHHhhh-cCCCcceeeeecc
Confidence 4567899999999999988665 4888888876664
|
|
| >PTZ00082 L-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.038 Score=55.00 Aligned_cols=119 Identities=12% Similarity=0.102 Sum_probs=76.8
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCC-cEEEEeCCCCCCChh-HHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCC
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGD-GVLGLDNFNSYYDPS-LKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVP 193 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~-~V~~~~r~~~~~~~~-~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~ 193 (469)
.+.++|.|+|| |.+|..++..++..|. +|+++|++++..... +..............+.. .+| + +.++++
T Consensus 4 ~~~~KI~IIGa-G~vG~~ia~~la~~gl~~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~~--~~d---~-~~l~~a- 75 (321)
T PTZ00082 4 IKRRKISLIGS-GNIGGVMAYLIVLKNLGDVVLFDIVKNIPQGKALDISHSNVIAGSNSKVIG--TNN---Y-EDIAGS- 75 (321)
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhCCCCeEEEEeCCCchhhHHHHHHHhhhhccCCCeEEEE--CCC---H-HHhCCC-
Confidence 34578999995 9999999999999995 899999876542111 111101111111223332 123 3 246778
Q ss_pred ccEEEEcccccChhhhcc-----ChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcC
Q 012176 194 FTHVLHLAAQAGVRYAMQ-----NPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASS 245 (469)
Q Consensus 194 ~d~Vih~Aa~~~~~~~~~-----~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS 245 (469)
|+||.+++.... ... +..+.+..|+.-.+.+++.+.+.+....+|.+|-
T Consensus 76 -DiVI~tag~~~~--~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~p~a~~iv~sN 129 (321)
T PTZ00082 76 -DVVIVTAGLTKR--PGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYCPNAFVIVITN 129 (321)
T ss_pred -CEEEECCCCCCC--CCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 999999987432 112 4566778899999999999888876546776664
|
|
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.015 Score=60.69 Aligned_cols=102 Identities=18% Similarity=0.224 Sum_probs=69.0
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhh-ccCCc
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLF-DVVPF 194 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~-~~~~~ 194 (469)
..+++|+|+|+ |.+|+.+++.|.+.|++|++++++.+ ....... ...++.++.||.+|.+.++++- +.+
T Consensus 229 ~~~~~iiIiG~-G~~g~~l~~~L~~~~~~v~vid~~~~----~~~~~~~---~~~~~~~i~gd~~~~~~L~~~~~~~a-- 298 (453)
T PRK09496 229 KPVKRVMIVGG-GNIGYYLAKLLEKEGYSVKLIERDPE----RAEELAE---ELPNTLVLHGDGTDQELLEEEGIDEA-- 298 (453)
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhCCCeEEEEECCHH----HHHHHHH---HCCCCeEEECCCCCHHHHHhcCCccC--
Confidence 45789999997 99999999999999999999987432 1111111 1236889999999999886543 444
Q ss_pred cEEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcC
Q 012176 195 THVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASS 245 (469)
Q Consensus 195 d~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS 245 (469)
|.||-+... + ..|+. +...|++.+.. ++|....
T Consensus 299 ~~vi~~~~~--------~-----~~n~~----~~~~~~~~~~~-~ii~~~~ 331 (453)
T PRK09496 299 DAFIALTND--------D-----EANIL----SSLLAKRLGAK-KVIALVN 331 (453)
T ss_pred CEEEECCCC--------c-----HHHHH----HHHHHHHhCCC-eEEEEEC
Confidence 888865532 1 23443 33355666665 6665543
|
|
| >cd01487 E1_ThiF_like E1_ThiF_like | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.019 Score=51.79 Aligned_cols=108 Identities=21% Similarity=0.174 Sum_probs=65.8
Q ss_pred EEEEEcCCChhHHHHHHHHHHCCC-cEEEEeCCC---CCCC----------hhHHHHHHHhh----ccCCeEEEEecCCC
Q 012176 120 TVLVTGAAGFVGSHCSLALKKRGD-GVLGLDNFN---SYYD----------PSLKRARQKLL----QKHQVFIVEGDLND 181 (469)
Q Consensus 120 ~VlVtGatG~IG~~l~~~L~~~G~-~V~~~~r~~---~~~~----------~~~~~~~~~~~----~~~~v~~v~~Dl~d 181 (469)
+|+|.|+ |.+|..+++.|.+.|. +++++|... +... ..+.......+ ..-+++.+...+..
T Consensus 1 ~VlViG~-GglGs~ia~~La~~Gvg~i~lvD~D~v~~sNl~Rq~~~~~~vg~~Ka~~~~~~l~~lnp~v~i~~~~~~~~~ 79 (174)
T cd01487 1 KVGIAGA-GGLGSNIAVLLARSGVGNLKLVDFDVVEPSNLNRQQYFLSQIGEPKVEALKENLREINPFVKIEAINIKIDE 79 (174)
T ss_pred CEEEECc-CHHHHHHHHHHHHcCCCeEEEEeCCEEcCcchhcccccHhhCCChHHHHHHHHHHHHCCCCEEEEEEeecCh
Confidence 4899996 9999999999999998 488888764 1100 01111111111 12245555555544
Q ss_pred HHHHHHhhccCCccEEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhc-CCCCeEEEEcCccccC
Q 012176 182 APLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSV-NPQPSIVWASSSSVYG 250 (469)
Q Consensus 182 ~~~l~~~~~~~~~d~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~-~~~~~~V~~SS~~vyg 250 (469)
+.+.++++++ |+||.+... ...-..+.+.|.+. ++ .+|+.+..+.|+
T Consensus 80 -~~~~~~l~~~--DlVi~~~d~-----------------~~~r~~i~~~~~~~~~i--p~i~~~~~~~~~ 127 (174)
T cd01487 80 -NNLEGLFGDC--DIVVEAFDN-----------------AETKAMLAESLLGNKNK--PVVCASGMAGFG 127 (174)
T ss_pred -hhHHHHhcCC--CEEEECCCC-----------------HHHHHHHHHHHHHHCCC--CEEEEehhhccC
Confidence 5677888877 999998532 22224466666665 65 477765444444
|
Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. |
| >PRK08328 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.018 Score=54.47 Aligned_cols=113 Identities=17% Similarity=0.185 Sum_probs=70.4
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCC-cEEEEeCCCCCC------------Chh--HHH-HHH----HhhccCCeEEE
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGD-GVLGLDNFNSYY------------DPS--LKR-ARQ----KLLQKHQVFIV 175 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~-~V~~~~r~~~~~------------~~~--~~~-~~~----~~~~~~~v~~v 175 (469)
..+.+|+|.|+ |.+|.++++.|...|. +++++|...-.. +-. .+. ... .....-.++.+
T Consensus 25 L~~~~VlIiG~-GGlGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~~k~~~a~~~l~~~np~v~v~~~ 103 (231)
T PRK08328 25 LKKAKVAVVGV-GGLGSPVAYYLAAAGVGRILLIDEQTPELSNLNRQILHWEEDLGKNPKPLSAKWKLERFNSDIKIETF 103 (231)
T ss_pred HhCCcEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCccChhhhccccccChhhcCchHHHHHHHHHHHHhCCCCEEEEE
Confidence 45678999996 9999999999999996 577776433110 000 010 101 11112245555
Q ss_pred EecCCCHHHHHHhhccCCccEEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcCccccCC
Q 012176 176 EGDLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGL 251 (469)
Q Consensus 176 ~~Dl~d~~~l~~~~~~~~~d~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS~~vyg~ 251 (469)
...+ +++.+.++++++ |+||.+... ...-..+-++|++.+. .+|+.+..+.||.
T Consensus 104 ~~~~-~~~~~~~~l~~~--D~Vid~~d~-----------------~~~r~~l~~~~~~~~i--p~i~g~~~g~~G~ 157 (231)
T PRK08328 104 VGRL-SEENIDEVLKGV--DVIVDCLDN-----------------FETRYLLDDYAHKKGI--PLVHGAVEGTYGQ 157 (231)
T ss_pred eccC-CHHHHHHHHhcC--CEEEECCCC-----------------HHHHHHHHHHHHHcCC--CEEEEeeccCEEE
Confidence 5555 455677788877 999998743 1112334467888886 4888887776653
|
|
| >cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.021 Score=53.96 Aligned_cols=112 Identities=21% Similarity=0.148 Sum_probs=68.9
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCC-cEEEEeCCCCC--------------CChhHHHHHHHhh----ccCCeEEEE
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGD-GVLGLDNFNSY--------------YDPSLKRARQKLL----QKHQVFIVE 176 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~-~V~~~~r~~~~--------------~~~~~~~~~~~~~----~~~~v~~v~ 176 (469)
....+|+|.|+ |.+|.++++.|...|. +++++|...-. .-..+.....+.+ ..-.++.+.
T Consensus 19 L~~~~VlivG~-GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~i~~~~ 97 (228)
T cd00757 19 LKNARVLVVGA-GGLGSPAAEYLAAAGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAINPDVEIEAYN 97 (228)
T ss_pred HhCCcEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhCCCCEEEEec
Confidence 45678999996 9999999999999996 56666432210 0001111111111 112455665
Q ss_pred ecCCCHHHHHHhhccCCccEEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcCccccC
Q 012176 177 GDLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYG 250 (469)
Q Consensus 177 ~Dl~d~~~l~~~~~~~~~d~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS~~vyg 250 (469)
.++ +.+.+.++++++ |+||.+... ...-..+-++|.+.+. .+|+.+..+.+|
T Consensus 98 ~~i-~~~~~~~~~~~~--DvVi~~~d~-----------------~~~r~~l~~~~~~~~i--p~i~~g~~g~~g 149 (228)
T cd00757 98 ERL-DAENAEELIAGY--DLVLDCTDN-----------------FATRYLINDACVKLGK--PLVSGAVLGFEG 149 (228)
T ss_pred cee-CHHHHHHHHhCC--CEEEEcCCC-----------------HHHHHHHHHHHHHcCC--CEEEEEeccCEE
Confidence 555 346677788877 999998743 1223456678888886 478776655443
|
Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1). |
| >TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2 | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.044 Score=50.60 Aligned_cols=82 Identities=16% Similarity=0.205 Sum_probs=54.4
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCC-cEEEEeCC---CCCCC------hhHHHHH----HHhh----ccCCeEEEEe
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGD-GVLGLDNF---NSYYD------PSLKRAR----QKLL----QKHQVFIVEG 177 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~-~V~~~~r~---~~~~~------~~~~~~~----~~~~----~~~~v~~v~~ 177 (469)
...++|+|.|+ |.+|+.+++.|.+.|. +|+++|.. .+... ....+.+ ...+ ..-.++.+..
T Consensus 19 L~~~~V~IvG~-GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~~iG~~Ka~~~~~~l~~inp~~~i~~~~~ 97 (200)
T TIGR02354 19 LEQATVAICGL-GGLGSNVAINLARAGIGKLILVDFDVVEPSNLNRQQYKASQVGEPKTEALKENISEINPYTEIEAYDE 97 (200)
T ss_pred HhCCcEEEECc-CHHHHHHHHHHHHcCCCEEEEECCCEEcccccccccCChhhCCCHHHHHHHHHHHHHCCCCEEEEeee
Confidence 45678999997 8999999999999998 59988876 21111 1111111 1111 1224556666
Q ss_pred cCCCHHHHHHhhccCCccEEEEcc
Q 012176 178 DLNDAPLLTKLFDVVPFTHVLHLA 201 (469)
Q Consensus 178 Dl~d~~~l~~~~~~~~~d~Vih~A 201 (469)
+++ .+.+.++++++ |+||.+.
T Consensus 98 ~i~-~~~~~~~~~~~--DlVi~a~ 118 (200)
T TIGR02354 98 KIT-EENIDKFFKDA--DIVCEAF 118 (200)
T ss_pred eCC-HhHHHHHhcCC--CEEEECC
Confidence 665 46678888877 9999983
|
Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter. |
| >cd00300 LDH_like L-lactate dehydrogenase-like enzymes | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.025 Score=55.69 Aligned_cols=112 Identities=18% Similarity=0.139 Sum_probs=74.1
Q ss_pred EEEEcCCChhHHHHHHHHHHCC--CcEEEEeCCCCCCChhHHHHHHHhhcc-CCeEEEEecCCCHHHHHHhhccCCccEE
Q 012176 121 VLVTGAAGFVGSHCSLALKKRG--DGVLGLDNFNSYYDPSLKRARQKLLQK-HQVFIVEGDLNDAPLLTKLFDVVPFTHV 197 (469)
Q Consensus 121 VlVtGatG~IG~~l~~~L~~~G--~~V~~~~r~~~~~~~~~~~~~~~~~~~-~~v~~v~~Dl~d~~~l~~~~~~~~~d~V 197 (469)
|.|.|+ |++|..++..|+..| ++++++|+..+........ ....... ....+... .| . +.++++ |+|
T Consensus 1 i~iiGa-G~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~D-L~~~~~~~~~~~i~~~--~~---~-~~l~~a--DiV 70 (300)
T cd00300 1 ITIIGA-GNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALD-LSHASAFLATGTIVRG--GD---Y-ADAADA--DIV 70 (300)
T ss_pred CEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHh-HHHhccccCCCeEEEC--CC---H-HHhCCC--CEE
Confidence 467886 899999999999988 7899999865432211111 1111110 12233221 22 2 366777 999
Q ss_pred EEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEc
Q 012176 198 LHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWAS 244 (469)
Q Consensus 198 ih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~S 244 (469)
|.++|... ....+..+....|+.-.+.+.+.+++++....+|.+|
T Consensus 71 Iitag~p~--~~~~~R~~l~~~n~~i~~~~~~~i~~~~p~~~viv~s 115 (300)
T cd00300 71 VITAGAPR--KPGETRLDLINRNAPILRSVITNLKKYGPDAIILVVS 115 (300)
T ss_pred EEcCCCCC--CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcc
Confidence 99998732 2234567788899999999999999888765677666
|
Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot |
| >TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.035 Score=56.31 Aligned_cols=173 Identities=15% Similarity=0.115 Sum_probs=97.5
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCC-----cEEE--E--eCCCCCCChhHHHHHHHh-hccCCeEEEEecCCCHHHHH
Q 012176 117 NGMTVLVTGAAGFVGSHCSLALKKRGD-----GVLG--L--DNFNSYYDPSLKRARQKL-LQKHQVFIVEGDLNDAPLLT 186 (469)
Q Consensus 117 ~~~~VlVtGatG~IG~~l~~~L~~~G~-----~V~~--~--~r~~~~~~~~~~~~~~~~-~~~~~v~~v~~Dl~d~~~l~ 186 (469)
+.-+|.|+|++|.+|.+++-.|...|. +|.+ + +++.+............. ....++.+..+ | .
T Consensus 43 ~p~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD~~~~~a~g~a~DL~d~a~~~~~~v~i~~~---~----y 115 (387)
T TIGR01757 43 KTVNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSERSKEALEGVAMELEDSLYPLLREVSIGID---P----Y 115 (387)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccCccchhhhHHHHHHHHhhhhhcCceEEecC---C----H
Confidence 346999999999999999999998763 2333 3 554432221111111110 00113332222 2 2
Q ss_pred HhhccCCccEEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcC-CCCeEEEEcCcc---ccCCCCCCCCCCCCC
Q 012176 187 KLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVN-PQPSIVWASSSS---VYGLNTQVPFSESHR 262 (469)
Q Consensus 187 ~~~~~~~~d~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~-~~~~~V~~SS~~---vyg~~~~~~~~E~~~ 262 (469)
+.++++ |+||-+||.. +-...+..+.+..|+.-.+.+....+++. ....+|.+|-.. .|-.....++
T Consensus 116 ~~~kda--DIVVitAG~p--rkpg~tR~dll~~N~~I~k~i~~~I~~~a~~~~iviVVsNPvDv~t~v~~k~sg~----- 186 (387)
T TIGR01757 116 EVFEDA--DWALLIGAKP--RGPGMERADLLDINGQIFADQGKALNAVASKNCKVLVVGNPCNTNALIAMKNAPN----- 186 (387)
T ss_pred HHhCCC--CEEEECCCCC--CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCCcHHHHHHHHHHHcCC-----
Confidence 456677 9999999973 22335667899999999999999998854 444677666311 0000000000
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHhCCcEEEEeecceecCCCC
Q 012176 263 TDQPASLYAATKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGR 306 (469)
Q Consensus 263 ~~~p~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~Gp~~~ 306 (469)
+ .....=..+.+..-++-..+++..+++..-|+-++|.|..++
T Consensus 187 ~-~~rviG~gT~LDsaR~r~~LA~~l~v~~~~V~~~~V~GeHGd 229 (387)
T TIGR01757 187 I-PRKNFHALTRLDENRAKCQLALKSGKFYTSVSNVTIWGNHST 229 (387)
T ss_pred C-cccEEEecchhHHHHHHHHHHHHHCcChhHcceeEEEecCCC
Confidence 0 011111223334444455556667887777777778886553
|
This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized. |
| >PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.016 Score=62.67 Aligned_cols=96 Identities=18% Similarity=0.195 Sum_probs=69.0
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHh-hccCCccE
Q 012176 118 GMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKL-FDVVPFTH 196 (469)
Q Consensus 118 ~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~-~~~~~~d~ 196 (469)
..+|+|+|. |-+|+.+++.|.++|++|++++.+.+ ..+.....+..++.||.+|++.++++ ++.+ |.
T Consensus 400 ~~~vII~G~-Gr~G~~va~~L~~~g~~vvvID~d~~---------~v~~~~~~g~~v~~GDat~~~~L~~agi~~A--~~ 467 (601)
T PRK03659 400 KPQVIIVGF-GRFGQVIGRLLMANKMRITVLERDIS---------AVNLMRKYGYKVYYGDATQLELLRAAGAEKA--EA 467 (601)
T ss_pred cCCEEEecC-chHHHHHHHHHHhCCCCEEEEECCHH---------HHHHHHhCCCeEEEeeCCCHHHHHhcCCccC--CE
Confidence 467999995 99999999999999999999997432 11122234889999999999988875 3445 88
Q ss_pred EEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEE
Q 012176 197 VLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVW 242 (469)
Q Consensus 197 Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~ 242 (469)
||-+-.. -.....++..+++.....++|.
T Consensus 468 vv~~~~d-----------------~~~n~~i~~~~r~~~p~~~Iia 496 (601)
T PRK03659 468 IVITCNE-----------------PEDTMKIVELCQQHFPHLHILA 496 (601)
T ss_pred EEEEeCC-----------------HHHHHHHHHHHHHHCCCCeEEE
Confidence 8866532 2234456777887766545553
|
|
| >TIGR02355 moeB molybdopterin synthase sulfurylase MoeB | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.042 Score=52.30 Aligned_cols=112 Identities=18% Similarity=0.176 Sum_probs=68.4
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCC-cEEEEeCCCCCCC----------hhH----HHHHHHhh----ccCCeEEEE
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGD-GVLGLDNFNSYYD----------PSL----KRARQKLL----QKHQVFIVE 176 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~-~V~~~~r~~~~~~----------~~~----~~~~~~~~----~~~~v~~v~ 176 (469)
..+.+|+|.|+ |.+|..+++.|.+.|. +++++|...-... ..+ .......+ ..-.++.+.
T Consensus 22 L~~~~VlvvG~-GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~inp~v~i~~~~ 100 (240)
T TIGR02355 22 LKASRVLIVGL-GGLGCAASQYLAAAGVGNLTLLDFDTVSLSNLQRQVLHSDANIGQPKVESAKDALTQINPHIAINPIN 100 (240)
T ss_pred HhCCcEEEECc-CHHHHHHHHHHHHcCCCEEEEEeCCcccccCcccceeeeHhhCCCcHHHHHHHHHHHHCCCcEEEEEe
Confidence 45678999996 9999999999999985 5666665432210 000 01111111 122344444
Q ss_pred ecCCCHHHHHHhhccCCccEEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcCccccC
Q 012176 177 GDLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYG 250 (469)
Q Consensus 177 ~Dl~d~~~l~~~~~~~~~d~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS~~vyg 250 (469)
..+ +.+.+.++++++ |+||.+... ...-..+-++|.+.++ .+|+.++.+.+|
T Consensus 101 ~~i-~~~~~~~~~~~~--DlVvd~~D~-----------------~~~r~~ln~~~~~~~i--p~v~~~~~g~~G 152 (240)
T TIGR02355 101 AKL-DDAELAALIAEH--DIVVDCTDN-----------------VEVRNQLNRQCFAAKV--PLVSGAAIRMEG 152 (240)
T ss_pred ccC-CHHHHHHHhhcC--CEEEEcCCC-----------------HHHHHHHHHHHHHcCC--CEEEEEecccEe
Confidence 444 345677888877 999998742 2223445678888887 488766555444
|
This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899). |
| >cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.025 Score=52.15 Aligned_cols=114 Identities=18% Similarity=0.211 Sum_probs=70.8
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCC-cEEEEeCCCCCC---------C---hhHHHHH----H----HhhccCCeEE
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGD-GVLGLDNFNSYY---------D---PSLKRAR----Q----KLLQKHQVFI 174 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~-~V~~~~r~~~~~---------~---~~~~~~~----~----~~~~~~~v~~ 174 (469)
.+..+|+|.|++| +|.++++.|...|- +++++|...-.. . ....+.+ . +....-.++.
T Consensus 17 L~~s~VlviG~gg-lGsevak~L~~~GVg~i~lvD~d~ve~snl~rq~~~~~~~~~iG~~Ka~~~~~~L~~lNp~v~i~~ 95 (198)
T cd01485 17 LRSAKVLIIGAGA-LGAEIAKNLVLAGIDSITIVDHRLVSTEDLGSNFFLDAEVSNSGMNRAAASYEFLQELNPNVKLSI 95 (198)
T ss_pred HhhCcEEEECCCH-HHHHHHHHHHHcCCCEEEEEECCcCChhcCcccEecccchhhcCchHHHHHHHHHHHHCCCCEEEE
Confidence 4557899999855 99999999999996 578887542210 0 1010011 1 1112224555
Q ss_pred EEecCCC-HHHHHHhhccCCccEEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcCccccCC
Q 012176 175 VEGDLND-APLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGL 251 (469)
Q Consensus 175 v~~Dl~d-~~~l~~~~~~~~~d~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS~~vyg~ 251 (469)
+..++.+ .+...+.++.+ |+||.+.. |......+-+.|++.+. .+|+.++.+.||.
T Consensus 96 ~~~~~~~~~~~~~~~~~~~--dvVi~~~d-----------------~~~~~~~ln~~c~~~~i--p~i~~~~~G~~G~ 152 (198)
T cd01485 96 VEEDSLSNDSNIEEYLQKF--TLVIATEE-----------------NYERTAKVNDVCRKHHI--PFISCATYGLIGY 152 (198)
T ss_pred EecccccchhhHHHHHhCC--CEEEECCC-----------------CHHHHHHHHHHHHHcCC--CEEEEEeecCEEE
Confidence 5555542 44566777766 99997742 22233456688999987 4898888777763
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol |
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.03 Score=47.92 Aligned_cols=89 Identities=19% Similarity=0.261 Sum_probs=63.6
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCccE
Q 012176 117 NGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTH 196 (469)
Q Consensus 117 ~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~d~ 196 (469)
++++|++.|. | -|.++++.|.+.|++|+++|.++. ..... ...++.++.+|+.+++. ++-+++ |.
T Consensus 16 ~~~kileIG~-G-fG~~vA~~L~~~G~~ViaIDi~~~----aV~~a-----~~~~~~~v~dDlf~p~~--~~y~~a--~l 80 (134)
T PRK04148 16 KNKKIVELGI-G-FYFKVAKKLKESGFDVIVIDINEK----AVEKA-----KKLGLNAFVDDLFNPNL--EIYKNA--KL 80 (134)
T ss_pred cCCEEEEEEe-c-CCHHHHHHHHHCCCEEEEEECCHH----HHHHH-----HHhCCeEEECcCCCCCH--HHHhcC--CE
Confidence 4578999996 6 899999999999999999998543 11111 22378999999998763 334455 77
Q ss_pred EEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCC
Q 012176 197 VLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQ 237 (469)
Q Consensus 197 Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~ 237 (469)
|+.+- .+.+ -...+++.|++.+..
T Consensus 81 iysir----------pp~e-------l~~~~~~la~~~~~~ 104 (134)
T PRK04148 81 IYSIR----------PPRD-------LQPFILELAKKINVP 104 (134)
T ss_pred EEEeC----------CCHH-------HHHHHHHHHHHcCCC
Confidence 77543 2222 346789999999986
|
|
| >PRK05597 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.033 Score=56.23 Aligned_cols=112 Identities=18% Similarity=0.061 Sum_probs=69.2
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCC-cEEEEeCCCCCC------------Ch--hHHH-HHHHh---hccCCeEEEE
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGD-GVLGLDNFNSYY------------DP--SLKR-ARQKL---LQKHQVFIVE 176 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~-~V~~~~r~~~~~------------~~--~~~~-~~~~~---~~~~~v~~v~ 176 (469)
..+.+|+|.|+ |.+|..+++.|...|. +++++|...-.. +- .+.. ..... ...-.++.+.
T Consensus 26 L~~~~VlivG~-GGlGs~~a~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~v~~~~ 104 (355)
T PRK05597 26 LFDAKVAVIGA-GGLGSPALLYLAGAGVGHITIIDDDTVDLSNLHRQVIHSTAGVGQPKAESAREAMLALNPDVKVTVSV 104 (355)
T ss_pred HhCCeEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCCEEcccccccCcccChhHCCChHHHHHHHHHHHHCCCcEEEEEE
Confidence 45678999997 9999999999999986 677776543110 00 0011 11111 1122455555
Q ss_pred ecCCCHHHHHHhhccCCccEEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcCccccC
Q 012176 177 GDLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYG 250 (469)
Q Consensus 177 ~Dl~d~~~l~~~~~~~~~d~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS~~vyg 250 (469)
..++ .+...++++++ |+||.+... ...-..+-++|.+.++. +|+.+..+.+|
T Consensus 105 ~~i~-~~~~~~~~~~~--DvVvd~~d~-----------------~~~r~~~n~~c~~~~ip--~v~~~~~g~~g 156 (355)
T PRK05597 105 RRLT-WSNALDELRDA--DVILDGSDN-----------------FDTRHLASWAAARLGIP--HVWASILGFDA 156 (355)
T ss_pred eecC-HHHHHHHHhCC--CEEEECCCC-----------------HHHHHHHHHHHHHcCCC--EEEEEEecCeE
Confidence 5665 34566778877 999998743 22223355678888874 88877655544
|
|
| >PRK08762 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.029 Score=57.12 Aligned_cols=111 Identities=21% Similarity=0.162 Sum_probs=68.1
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCC-cEEEEeCCCCC--------------CChhHHHH-HHHhhc-cC--CeEEEE
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGD-GVLGLDNFNSY--------------YDPSLKRA-RQKLLQ-KH--QVFIVE 176 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~-~V~~~~r~~~~--------------~~~~~~~~-~~~~~~-~~--~v~~v~ 176 (469)
...++|+|.|+ |.+|.++++.|...|. +++++|+..-. .-..+... .....+ .+ .++.+.
T Consensus 133 l~~~~VlvvG~-GG~Gs~ia~~La~~Gvg~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~v~~~~ 211 (376)
T PRK08762 133 LLEARVLLIGA-GGLGSPAALYLAAAGVGTLGIVDHDVVDRSNLQRQILHTEDRVGQPKVDSAAQRLAALNPDVQVEAVQ 211 (376)
T ss_pred HhcCcEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCCEecchhhccccccchhhCCCcHHHHHHHHHHHHCCCCEEEEEe
Confidence 45678999986 8999999999999997 68888875210 00011111 111111 12 344444
Q ss_pred ecCCCHHHHHHhhccCCccEEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcCcccc
Q 012176 177 GDLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVY 249 (469)
Q Consensus 177 ~Dl~d~~~l~~~~~~~~~d~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS~~vy 249 (469)
..+. .+.+.++++++ |+||++... ...-..+-++|.+.++ .+|+.+..+.+
T Consensus 212 ~~~~-~~~~~~~~~~~--D~Vv~~~d~-----------------~~~r~~ln~~~~~~~i--p~i~~~~~g~~ 262 (376)
T PRK08762 212 ERVT-SDNVEALLQDV--DVVVDGADN-----------------FPTRYLLNDACVKLGK--PLVYGAVFRFE 262 (376)
T ss_pred ccCC-hHHHHHHHhCC--CEEEECCCC-----------------HHHHHHHHHHHHHcCC--CEEEEEeccCE
Confidence 4443 35677788877 999998743 1122345678899887 48887755443
|
|
| >PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.01 Score=59.20 Aligned_cols=95 Identities=18% Similarity=0.116 Sum_probs=55.7
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCcEE---EEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCC
Q 012176 117 NGMTVLVTGAAGFVGSHCSLALKKRGDGVL---GLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVP 193 (469)
Q Consensus 117 ~~~~VlVtGatG~IG~~l~~~L~~~G~~V~---~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~ 193 (469)
++++|+|+||||++|..+++.|.+++|.+. .+... +...+.+ ...+ ...++.+.+.. + ++++
T Consensus 3 ~~~~IaIvGATG~vG~eLlrlL~~~~hP~~~l~~v~s~-~~aG~~l--------~~~~---~~l~~~~~~~~-~-~~~v- 67 (336)
T PRK05671 3 QPLDIAVVGATGTVGEALVQILEERDFPVGTLHLLASS-ESAGHSV--------PFAG---KNLRVREVDSF-D-FSQV- 67 (336)
T ss_pred CCCEEEEEccCCHHHHHHHHHHhhCCCCceEEEEEECc-ccCCCee--------ccCC---cceEEeeCChH-H-hcCC-
Confidence 347999999999999999999998877443 33321 1111110 0112 12333332222 1 4556
Q ss_pred ccEEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcCcc
Q 012176 194 FTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSS 247 (469)
Q Consensus 194 ~d~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS~~ 247 (469)
|+||-+... + -...++..+.+.|+ ++|=.|+..
T Consensus 68 -D~vFla~p~-~-----------------~s~~~v~~~~~~G~--~VIDlS~~f 100 (336)
T PRK05671 68 -QLAFFAAGA-A-----------------VSRSFAEKARAAGC--SVIDLSGAL 100 (336)
T ss_pred -CEEEEcCCH-H-----------------HHHHHHHHHHHCCC--eEEECchhh
Confidence 999987753 1 12346777777776 577777654
|
|
| >cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1 | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.033 Score=51.31 Aligned_cols=111 Identities=16% Similarity=0.203 Sum_probs=67.0
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCC-cEEEEeCCCCCCC----------hh----HHHHHH----HhhccCCeEEEE
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGD-GVLGLDNFNSYYD----------PS----LKRARQ----KLLQKHQVFIVE 176 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~-~V~~~~r~~~~~~----------~~----~~~~~~----~~~~~~~v~~v~ 176 (469)
....+|+|.|+ |.+|.++++.|...|- +++++|...-... .. +..... +....-.++...
T Consensus 19 L~~s~VlIiG~-gglG~evak~La~~GVg~i~lvD~d~ve~snL~rqfl~~~~diG~~Ka~a~~~~L~~lNp~v~i~~~~ 97 (197)
T cd01492 19 LRSARILLIGL-KGLGAEIAKNLVLSGIGSLTILDDRTVTEEDLGAQFLIPAEDLGQNRAEASLERLRALNPRVKVSVDT 97 (197)
T ss_pred HHhCcEEEEcC-CHHHHHHHHHHHHcCCCEEEEEECCcccHhhCCCCccccHHHcCchHHHHHHHHHHHHCCCCEEEEEe
Confidence 45678999997 5599999999999996 5777765421100 00 001111 111122455555
Q ss_pred ecCCCHHHHHHhhccCCccEEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcCccccC
Q 012176 177 GDLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYG 250 (469)
Q Consensus 177 ~Dl~d~~~l~~~~~~~~~d~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS~~vyg 250 (469)
..+. +...+.++++ |+||.+... ......+-++|++.+. .+|+.++.+.||
T Consensus 98 ~~~~--~~~~~~~~~~--dvVi~~~~~-----------------~~~~~~ln~~c~~~~i--p~i~~~~~G~~G 148 (197)
T cd01492 98 DDIS--EKPEEFFSQF--DVVVATELS-----------------RAELVKINELCRKLGV--KFYATGVHGLFG 148 (197)
T ss_pred cCcc--ccHHHHHhCC--CEEEECCCC-----------------HHHHHHHHHHHHHcCC--CEEEEEecCCEE
Confidence 5454 2245566766 999987532 2233455678999987 488888776665
|
Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain. |
| >PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ] | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.021 Score=44.24 Aligned_cols=56 Identities=27% Similarity=0.419 Sum_probs=40.1
Q ss_pred EEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCC---ChhHHHHHHHhhccCCeEEEE
Q 012176 120 TVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYY---DPSLKRARQKLLQKHQVFIVE 176 (469)
Q Consensus 120 ~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~---~~~~~~~~~~~~~~~~v~~v~ 176 (469)
+|+|.|| |++|-.++..|.+.|.+|+++.|.+... ++.........+...+++++.
T Consensus 1 ~vvViGg-G~ig~E~A~~l~~~g~~vtli~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~ 59 (80)
T PF00070_consen 1 RVVVIGG-GFIGIELAEALAELGKEVTLIERSDRLLPGFDPDAAKILEEYLRKRGVEVHT 59 (80)
T ss_dssp EEEEESS-SHHHHHHHHHHHHTTSEEEEEESSSSSSTTSSHHHHHHHHHHHHHTTEEEEE
T ss_pred CEEEECc-CHHHHHHHHHHHHhCcEEEEEeccchhhhhcCHHHHHHHHHHHHHCCCEEEe
Confidence 5788896 9999999999999999999999987655 223333333334444555554
|
Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A .... |
| >PRK05690 molybdopterin biosynthesis protein MoeB; Provisional | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.07 Score=50.93 Aligned_cols=112 Identities=19% Similarity=0.167 Sum_probs=68.4
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCC-cEEEEeCCCCCCCh----------h----HHHH-HHH---hhccCCeEEEE
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGD-GVLGLDNFNSYYDP----------S----LKRA-RQK---LLQKHQVFIVE 176 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~-~V~~~~r~~~~~~~----------~----~~~~-~~~---~~~~~~v~~v~ 176 (469)
.+..+|+|.|+ |.+|..+++.|...|. +++++|...-.... . +... ... ....-.++.+.
T Consensus 30 L~~~~VliiG~-GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~Ka~~a~~~l~~lnp~v~i~~~~ 108 (245)
T PRK05690 30 LKAARVLVVGL-GGLGCAASQYLAAAGVGTLTLVDFDTVSLSNLQRQVLHDDATIGQPKVESARAALARINPHIAIETIN 108 (245)
T ss_pred hcCCeEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCEECcchhhhhhcCChhhCCChHHHHHHHHHHHHCCCCEEEEEe
Confidence 56679999998 9999999999999995 66766543211100 0 0011 111 11122455555
Q ss_pred ecCCCHHHHHHhhccCCccEEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcCccccC
Q 012176 177 GDLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYG 250 (469)
Q Consensus 177 ~Dl~d~~~l~~~~~~~~~d~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS~~vyg 250 (469)
..++ .+.+.++++++ |+||.+... ...-..+-++|.+.+. .+|+.+..+.+|
T Consensus 109 ~~i~-~~~~~~~~~~~--DiVi~~~D~-----------------~~~r~~ln~~~~~~~i--p~v~~~~~g~~G 160 (245)
T PRK05690 109 ARLD-DDELAALIAGH--DLVLDCTDN-----------------VATRNQLNRACFAAKK--PLVSGAAIRMEG 160 (245)
T ss_pred ccCC-HHHHHHHHhcC--CEEEecCCC-----------------HHHHHHHHHHHHHhCC--EEEEeeeccCCc
Confidence 5554 45567788877 999998742 2223346677888886 477765544333
|
|
| >COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only] | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.022 Score=56.81 Aligned_cols=77 Identities=27% Similarity=0.226 Sum_probs=48.9
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCC---HHHHHHhhccCC
Q 012176 117 NGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLND---APLLTKLFDVVP 193 (469)
Q Consensus 117 ~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d---~~~l~~~~~~~~ 193 (469)
.+.+|||+||+|.+|...++-+...|+.++++....+ ... .+...+...+. |..+ .+.+.++..+.+
T Consensus 142 ~g~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~~s~~--------k~~-~~~~lGAd~vi-~y~~~~~~~~v~~~t~g~g 211 (326)
T COG0604 142 PGETVLVHGAAGGVGSAAIQLAKALGATVVAVVSSSE--------KLE-LLKELGADHVI-NYREEDFVEQVRELTGGKG 211 (326)
T ss_pred CCCEEEEecCCchHHHHHHHHHHHcCCcEEEEecCHH--------HHH-HHHhcCCCEEE-cCCcccHHHHHHHHcCCCC
Confidence 3789999999999999999999999976666554221 111 22222222111 1222 334555555556
Q ss_pred ccEEEEcccc
Q 012176 194 FTHVLHLAAQ 203 (469)
Q Consensus 194 ~d~Vih~Aa~ 203 (469)
+|+|++..|.
T Consensus 212 vDvv~D~vG~ 221 (326)
T COG0604 212 VDVVLDTVGG 221 (326)
T ss_pred ceEEEECCCH
Confidence 7999999875
|
|
| >PRK15116 sulfur acceptor protein CsdL; Provisional | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.098 Score=50.44 Aligned_cols=110 Identities=17% Similarity=0.254 Sum_probs=66.1
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCC-CcEEEEeCCCCCC----------ChhHHHHH----HHhhc--cCC--eEEEE
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRG-DGVLGLDNFNSYY----------DPSLKRAR----QKLLQ--KHQ--VFIVE 176 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G-~~V~~~~r~~~~~----------~~~~~~~~----~~~~~--~~~--v~~v~ 176 (469)
..+.+|+|.|+ |.+|.++++.|.+.| -+++++|...-.. ....-+.+ .+.+. .+. ++.+.
T Consensus 28 L~~s~VlVvG~-GGVGs~vae~Lar~GVg~itLiD~D~V~~sNlnRQ~~~~~~~vG~~Kve~~~~rl~~INP~~~V~~i~ 106 (268)
T PRK15116 28 FADAHICVVGI-GGVGSWAAEALARTGIGAITLIDMDDVCVTNTNRQIHALRDNVGLAKAEVMAERIRQINPECRVTVVD 106 (268)
T ss_pred hcCCCEEEECc-CHHHHHHHHHHHHcCCCEEEEEeCCEecccccccccccChhhcChHHHHHHHHHHHhHCCCcEEEEEe
Confidence 56678999996 999999999999999 5778777542110 01000111 11111 123 44442
Q ss_pred ecCCCHHHHHHhhccCCccEEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcCcc
Q 012176 177 GDLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSS 247 (469)
Q Consensus 177 ~Dl~d~~~l~~~~~~~~~d~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS~~ 247 (469)
+..+++.+.+++.. ++|+||.+... +..-..|.+.|++.+.+ +|.+..++
T Consensus 107 -~~i~~e~~~~ll~~-~~D~VIdaiD~-----------------~~~k~~L~~~c~~~~ip--~I~~gGag 156 (268)
T PRK15116 107 -DFITPDNVAEYMSA-GFSYVIDAIDS-----------------VRPKAALIAYCRRNKIP--LVTTGGAG 156 (268)
T ss_pred -cccChhhHHHHhcC-CCCEEEEcCCC-----------------HHHHHHHHHHHHHcCCC--EEEECCcc
Confidence 23345666666642 35999998753 22334678889988864 77665444
|
|
| >KOG1198 consensus Zinc-binding oxidoreductase [Energy production and conversion; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.016 Score=58.12 Aligned_cols=78 Identities=22% Similarity=0.197 Sum_probs=52.6
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCC-CcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhc--cC
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRG-DGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFD--VV 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~--~~ 192 (469)
..++.|||.||+|.+|++.++-+...| ..|+.... .+ ..++...-+... ..|..+++..+...+ +.
T Consensus 156 ~~g~~vLv~ggsggVG~~aiQlAk~~~~~~v~t~~s-~e---------~~~l~k~lGAd~-vvdy~~~~~~e~~kk~~~~ 224 (347)
T KOG1198|consen 156 SKGKSVLVLGGSGGVGTAAIQLAKHAGAIKVVTACS-KE---------KLELVKKLGADE-VVDYKDENVVELIKKYTGK 224 (347)
T ss_pred CCCCeEEEEeCCcHHHHHHHHHHHhcCCcEEEEEcc-cc---------hHHHHHHcCCcE-eecCCCHHHHHHHHhhcCC
Confidence 567899999999999999999999999 45544443 22 111111123222 246777666666655 45
Q ss_pred CccEEEEccccc
Q 012176 193 PFTHVLHLAAQA 204 (469)
Q Consensus 193 ~~d~Vih~Aa~~ 204 (469)
++|+|++|.|..
T Consensus 225 ~~DvVlD~vg~~ 236 (347)
T KOG1198|consen 225 GVDVVLDCVGGS 236 (347)
T ss_pred CccEEEECCCCC
Confidence 789999999873
|
|
| >PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.022 Score=59.40 Aligned_cols=77 Identities=22% Similarity=0.183 Sum_probs=50.9
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCcc
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFT 195 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~d 195 (469)
..+++|+|||++| +|..+++.|++.|++|++.++......... ..+...++.+..++.. .. ++.. ++|
T Consensus 3 ~~~k~v~v~G~g~-~G~s~a~~l~~~G~~V~~~d~~~~~~~~~~-----~~l~~~g~~~~~~~~~--~~---~~~~-~~d 70 (447)
T PRK02472 3 YQNKKVLVLGLAK-SGYAAAKLLHKLGANVTVNDGKPFSENPEA-----QELLEEGIKVICGSHP--LE---LLDE-DFD 70 (447)
T ss_pred cCCCEEEEEeeCH-HHHHHHHHHHHCCCEEEEEcCCCccchhHH-----HHHHhcCCEEEeCCCC--HH---HhcC-cCC
Confidence 3578999999977 999999999999999999987543221111 1122336666554322 11 1222 259
Q ss_pred EEEEccccc
Q 012176 196 HVLHLAAQA 204 (469)
Q Consensus 196 ~Vih~Aa~~ 204 (469)
.||..+|..
T Consensus 71 ~vV~s~gi~ 79 (447)
T PRK02472 71 LMVKNPGIP 79 (447)
T ss_pred EEEECCCCC
Confidence 999999863
|
|
| >PRK08057 cobalt-precorrin-6x reductase; Reviewed | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.029 Score=53.50 Aligned_cols=93 Identities=12% Similarity=0.009 Sum_probs=73.3
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCccEE
Q 012176 118 GMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTHV 197 (469)
Q Consensus 118 ~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~d~V 197 (469)
+++|||.|||+ =|+.|++.|.+.|++|++..-..... .....+.++.|-+.|.+.+.+++...+++.|
T Consensus 2 ~~~IlvlgGT~-egr~la~~L~~~g~~v~~Svat~~g~-----------~~~~~~~v~~G~l~~~~~l~~~l~~~~i~~V 69 (248)
T PRK08057 2 MPRILLLGGTS-EARALARALAAAGVDIVLSLAGRTGG-----------PADLPGPVRVGGFGGAEGLAAYLREEGIDLV 69 (248)
T ss_pred CceEEEEechH-HHHHHHHHHHhCCCeEEEEEccCCCC-----------cccCCceEEECCCCCHHHHHHHHHHCCCCEE
Confidence 46899999975 59999999999999998877533211 2234778888998899999999999899999
Q ss_pred EEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCC
Q 012176 198 LHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQ 237 (469)
Q Consensus 198 ih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~ 237 (469)
|+..-.+. ..-+.++.++|++.+..
T Consensus 70 IDATHPfA---------------~~is~~a~~ac~~~~ip 94 (248)
T PRK08057 70 IDATHPYA---------------AQISANAAAACRALGIP 94 (248)
T ss_pred EECCCccH---------------HHHHHHHHHHHHHhCCc
Confidence 99764422 23468899999999985
|
|
| >PRK00048 dihydrodipicolinate reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.031 Score=53.80 Aligned_cols=85 Identities=14% Similarity=0.084 Sum_probs=54.3
Q ss_pred CEEEEEcCCChhHHHHHHHHHHC-CCcEEEEe-CCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCccE
Q 012176 119 MTVLVTGAAGFVGSHCSLALKKR-GDGVLGLD-NFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTH 196 (469)
Q Consensus 119 ~~VlVtGatG~IG~~l~~~L~~~-G~~V~~~~-r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~d~ 196 (469)
|+|.|+|++|.+|+.+++.+.+. +.++.++. +..+..... . ..++...++++++++. +|+
T Consensus 2 mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~~~---------~-------~~~i~~~~dl~~ll~~--~Dv 63 (257)
T PRK00048 2 IKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLVGQ---------G-------ALGVAITDDLEAVLAD--ADV 63 (257)
T ss_pred cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCcccccc---------C-------CCCccccCCHHHhccC--CCE
Confidence 68999999999999999988875 67777644 432211100 1 1123233456666664 599
Q ss_pred EEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEE
Q 012176 197 VLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIV 241 (469)
Q Consensus 197 Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V 241 (469)
||+++.. .....++..|.++|+ ++|
T Consensus 64 Vid~t~p------------------~~~~~~~~~al~~G~--~vv 88 (257)
T PRK00048 64 LIDFTTP------------------EATLENLEFALEHGK--PLV 88 (257)
T ss_pred EEECCCH------------------HHHHHHHHHHHHcCC--CEE
Confidence 9998843 123567777888876 455
|
|
| >PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.051 Score=51.91 Aligned_cols=93 Identities=19% Similarity=0.208 Sum_probs=70.6
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhh--ccCCeEEEEecCCCHHHHHHhhccCCccE
Q 012176 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLL--QKHQVFIVEGDLNDAPLLTKLFDVVPFTH 196 (469)
Q Consensus 119 ~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~v~~v~~Dl~d~~~l~~~~~~~~~d~ 196 (469)
|+|||.|||+ =|+.|++.|.+.|+ |.+.+- ........ ..+.+.++.|-+.|.+.+.++++..+++.
T Consensus 1 m~ILvlgGTt-E~r~la~~L~~~g~-v~~sv~---------t~~g~~~~~~~~~~~~v~~G~lg~~~~l~~~l~~~~i~~ 69 (249)
T PF02571_consen 1 MKILVLGGTT-EGRKLAERLAEAGY-VIVSVA---------TSYGGELLKPELPGLEVRVGRLGDEEGLAEFLRENGIDA 69 (249)
T ss_pred CEEEEEechH-HHHHHHHHHHhcCC-EEEEEE---------hhhhHhhhccccCCceEEECCCCCHHHHHHHHHhCCCcE
Confidence 7899999975 59999999999998 665543 11122222 12467889999989999999999989999
Q ss_pred EEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCC
Q 012176 197 VLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQ 237 (469)
Q Consensus 197 Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~ 237 (469)
||+..-.+. ..-+.++.++|++.|+.
T Consensus 70 vIDATHPfA---------------~~is~na~~a~~~~~ip 95 (249)
T PF02571_consen 70 VIDATHPFA---------------AEISQNAIEACRELGIP 95 (249)
T ss_pred EEECCCchH---------------HHHHHHHHHHHhhcCcc
Confidence 999764322 23478899999999985
|
Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process |
| >cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.036 Score=54.58 Aligned_cols=112 Identities=15% Similarity=0.094 Sum_probs=69.4
Q ss_pred EEEEcCCChhHHHHHHHHHHCCC-cEEEEeCCCCCCChhHHHHHHHhhc--cCCeEEEEecCCCHHHHHHhhccCCccEE
Q 012176 121 VLVTGAAGFVGSHCSLALKKRGD-GVLGLDNFNSYYDPSLKRARQKLLQ--KHQVFIVEGDLNDAPLLTKLFDVVPFTHV 197 (469)
Q Consensus 121 VlVtGatG~IG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~--~~~v~~v~~Dl~d~~~l~~~~~~~~~d~V 197 (469)
|.|+|+ |.+|..++..|+..|. +|+++|++++.. ............ .....+.. . .| ++ .++++ |+|
T Consensus 1 I~IIGa-G~vG~~ia~~la~~~l~eV~L~Di~e~~~-~g~~~dl~~~~~~~~~~~~I~~-t-~d---~~-~l~dA--DiV 70 (300)
T cd01339 1 ISIIGA-GNVGATLAQLLALKELGDVVLLDIVEGLP-QGKALDISQAAPILGSDTKVTG-T-ND---YE-DIAGS--DVV 70 (300)
T ss_pred CEEECC-CHHHHHHHHHHHhCCCcEEEEEeCCCcHH-HHHHHHHHHhhhhcCCCeEEEE-c-CC---HH-HhCCC--CEE
Confidence 468898 9999999999998876 999999975422 111111111111 11122221 1 22 22 36777 999
Q ss_pred EEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEc
Q 012176 198 LHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWAS 244 (469)
Q Consensus 198 ih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~S 244 (469)
|.+++.... ...+..+....|+.-.+.+++...+......+|.+|
T Consensus 71 Iit~g~p~~--~~~~r~e~~~~n~~i~~~i~~~i~~~~p~~~iIv~s 115 (300)
T cd01339 71 VITAGIPRK--PGMSRDDLLGTNAKIVKEVAENIKKYAPNAIVIVVT 115 (300)
T ss_pred EEecCCCCC--cCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 999986321 223344566778888899998888877654556665
|
Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas |
| >cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.018 Score=51.61 Aligned_cols=57 Identities=19% Similarity=0.163 Sum_probs=47.4
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCc
Q 012176 115 RPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPF 194 (469)
Q Consensus 115 ~~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~ 194 (469)
...+++|+|+|+++.+|.-+++.|.++|.+|+++.|. .+++.+.+.++
T Consensus 41 ~l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~------------------------------~~~l~~~l~~a-- 88 (168)
T cd01080 41 DLAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSK------------------------------TKNLKEHTKQA-- 88 (168)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECC------------------------------chhHHHHHhhC--
Confidence 3688999999996678999999999999999999872 13456677777
Q ss_pred cEEEEcccc
Q 012176 195 THVLHLAAQ 203 (469)
Q Consensus 195 d~Vih~Aa~ 203 (469)
|+||.+.+.
T Consensus 89 DiVIsat~~ 97 (168)
T cd01080 89 DIVIVAVGK 97 (168)
T ss_pred CEEEEcCCC
Confidence 999998876
|
NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a |
| >TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.018 Score=57.91 Aligned_cols=99 Identities=12% Similarity=0.072 Sum_probs=56.6
Q ss_pred CEEEEEcCCChhHHHHHHHHHHC-CCcEEEE-eCCCCCCChhHHHHHHHhhccCCeEEE-EecCCCHHHHHHhhccCCcc
Q 012176 119 MTVLVTGAAGFVGSHCSLALKKR-GDGVLGL-DNFNSYYDPSLKRARQKLLQKHQVFIV-EGDLNDAPLLTKLFDVVPFT 195 (469)
Q Consensus 119 ~~VlVtGatG~IG~~l~~~L~~~-G~~V~~~-~r~~~~~~~~~~~~~~~~~~~~~v~~v-~~Dl~d~~~l~~~~~~~~~d 195 (469)
|+|.|+||||++|..+++.|.++ +.++..+ ++.... .+..... .+.+... ..++.+. +.+++.+++ |
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~sa-gk~~~~~------~~~l~~~~~~~~~~~-~~~~~~~~~--D 70 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRESA-GKPVSEV------HPHLRGLVDLNLEPI-DEEEIAEDA--D 70 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCceEEEEeccchhc-CCChHHh------CccccccCCceeecC-CHHHhhcCC--C
Confidence 57999999999999999999987 5677744 432211 1111110 1111111 1111111 123344445 9
Q ss_pred EEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcCcc
Q 012176 196 HVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSS 247 (469)
Q Consensus 196 ~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS~~ 247 (469)
+||-+.... ....++..+.+.|. ++|=.|+..
T Consensus 71 vVf~alP~~------------------~s~~~~~~~~~~G~--~VIDlS~~f 102 (346)
T TIGR01850 71 VVFLALPHG------------------VSAELAPELLAAGV--KVIDLSADF 102 (346)
T ss_pred EEEECCCch------------------HHHHHHHHHHhCCC--EEEeCChhh
Confidence 999887541 24566666666774 788888754
|
This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons. |
| >cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2 | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.061 Score=53.05 Aligned_cols=109 Identities=16% Similarity=0.232 Sum_probs=68.6
Q ss_pred EEEEEcCCChhHHHHHHHHHHCCC-cEEEEeCCCCCC----------Chh----HHHHHHHhh----ccCCeEEEEecCC
Q 012176 120 TVLVTGAAGFVGSHCSLALKKRGD-GVLGLDNFNSYY----------DPS----LKRARQKLL----QKHQVFIVEGDLN 180 (469)
Q Consensus 120 ~VlVtGatG~IG~~l~~~L~~~G~-~V~~~~r~~~~~----------~~~----~~~~~~~~~----~~~~v~~v~~Dl~ 180 (469)
+|||.|+ |.+|.++++.|...|. +++++|...-.. ... +.....+.+ ..-.++.+..++.
T Consensus 1 kVlIVGa-GGlG~EiaKnLal~Gvg~ItIvD~D~Ve~sNLnRQflf~~~dVGk~Kaevaa~~l~~lNp~v~V~~~~~~i~ 79 (312)
T cd01489 1 KVLVVGA-GGIGCELLKNLVLTGFGEIHIIDLDTIDLSNLNRQFLFRKKHVGKSKAQVAKEAVLSFNPNVKIVAYHANIK 79 (312)
T ss_pred CEEEECC-CHHHHHHHHHHHHhcCCeEEEEcCCCcchhhcCcCccCChhHcCcHHHHHHHHHHHHHCCCCeEEEEeccCC
Confidence 4899996 9999999999999986 567666432110 011 111111111 1235666777777
Q ss_pred CHHHHHHhhccCCccEEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcCccccC
Q 012176 181 DAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYG 250 (469)
Q Consensus 181 d~~~l~~~~~~~~~d~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS~~vyg 250 (469)
+.....+.+++. |+||.+.- |...-..+-+.|...++ .+|...+.+.+|
T Consensus 80 ~~~~~~~f~~~~--DvVv~a~D-----------------n~~ar~~in~~c~~~~i--p~I~~gt~G~~G 128 (312)
T cd01489 80 DPDFNVEFFKQF--DLVFNALD-----------------NLAARRHVNKMCLAADV--PLIESGTTGFLG 128 (312)
T ss_pred CccchHHHHhcC--CEEEECCC-----------------CHHHHHHHHHHHHHCCC--CEEEEecCccee
Confidence 654445677766 99998763 33334456677888886 488887777655
|
UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2. |
| >TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms) | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.014 Score=58.50 Aligned_cols=68 Identities=19% Similarity=0.118 Sum_probs=43.8
Q ss_pred EEEEEcCCChhHHHHHHHHHHCCCcEE---EEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCccE
Q 012176 120 TVLVTGAAGFVGSHCSLALKKRGDGVL---GLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTH 196 (469)
Q Consensus 120 ~VlVtGatG~IG~~l~~~L~~~G~~V~---~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~d~ 196 (469)
+|+|.||||++|..|++.|.+++|.+. .+.+....... +...+...+..|+. . ..++++ |+
T Consensus 1 ~VaIvGAtG~vG~eLi~lL~~~~hp~~~l~~~as~~~~g~~---------~~~~~~~~~~~~~~-~----~~~~~~--D~ 64 (339)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEERNFPIDKLVLLASDRSAGRK---------VTFKGKELEVNEAK-I----ESFEGI--DI 64 (339)
T ss_pred CEEEEcCCCHHHHHHHHHHHhCCCChhhEEEEeccccCCCe---------eeeCCeeEEEEeCC-h----HHhcCC--CE
Confidence 489999999999999999999888654 33343221111 01123455556663 1 234556 99
Q ss_pred EEEcccc
Q 012176 197 VLHLAAQ 203 (469)
Q Consensus 197 Vih~Aa~ 203 (469)
||-+++.
T Consensus 65 v~~a~g~ 71 (339)
T TIGR01296 65 ALFSAGG 71 (339)
T ss_pred EEECCCH
Confidence 9999875
|
Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978. |
| >PRK08223 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.078 Score=51.49 Aligned_cols=111 Identities=13% Similarity=0.028 Sum_probs=66.6
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCC-cEEEEeCCCCC----------CChhH----HHH-HHHh---hccCCeEEEE
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGD-GVLGLDNFNSY----------YDPSL----KRA-RQKL---LQKHQVFIVE 176 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~-~V~~~~r~~~~----------~~~~~----~~~-~~~~---~~~~~v~~v~ 176 (469)
....+|+|.|+ |.+|..+++.|...|- +++++|...-. ....+ ... .... ...-.++.+.
T Consensus 25 L~~s~VlIvG~-GGLGs~va~~LA~aGVG~i~lvD~D~Ve~SNLnRQ~l~~~~diG~~Kve~a~~~l~~iNP~v~V~~~~ 103 (287)
T PRK08223 25 LRNSRVAIAGL-GGVGGIHLLTLARLGIGKFTIADFDVFELRNFNRQAGAMMSTLGRPKAEVLAEMVRDINPELEIRAFP 103 (287)
T ss_pred HhcCCEEEECC-CHHHHHHHHHHHHhCCCeEEEEeCCCcchhccccccCcChhHCCCcHHHHHHHHHHHHCCCCEEEEEe
Confidence 45678999997 9999999999999985 56666543211 00111 111 1111 1122455555
Q ss_pred ecCCCHHHHHHhhccCCccEEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcCcc
Q 012176 177 GDLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSS 247 (469)
Q Consensus 177 ~Dl~d~~~l~~~~~~~~~d~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS~~ 247 (469)
..++ ++.+.++++++ |+||++.-.. ++..-..+-++|.+.++. +|+.+..+
T Consensus 104 ~~l~-~~n~~~ll~~~--DlVvD~~D~~---------------~~~~r~~ln~~c~~~~iP--~V~~~~~g 154 (287)
T PRK08223 104 EGIG-KENADAFLDGV--DVYVDGLDFF---------------EFDARRLVFAACQQRGIP--ALTAAPLG 154 (287)
T ss_pred cccC-ccCHHHHHhCC--CEEEECCCCC---------------cHHHHHHHHHHHHHcCCC--EEEEeccC
Confidence 5554 44577788887 9999765221 112234556789999874 78776543
|
|
| >PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.016 Score=58.19 Aligned_cols=101 Identities=12% Similarity=0.042 Sum_probs=58.3
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHC-CCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEE-EecCCCHHHHHHhhccCCcc
Q 012176 118 GMTVLVTGAAGFVGSHCSLALKKR-GDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIV-EGDLNDAPLLTKLFDVVPFT 195 (469)
Q Consensus 118 ~~~VlVtGatG~IG~~l~~~L~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v-~~Dl~d~~~l~~~~~~~~~d 195 (469)
+++|+|+||||++|+.+++.|.++ +.+++.+.+..+.. +..... .+.+..+ ..++.+.+.. .++++ |
T Consensus 2 m~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~~~~g-~~l~~~------~~~~~~~~~~~~~~~~~~--~~~~v--D 70 (343)
T PRK00436 2 MIKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSRSSAG-KPLSDV------HPHLRGLVDLVLEPLDPE--ILAGA--D 70 (343)
T ss_pred CeEEEEECCCCHHHHHHHHHHHcCCCceEEEEECccccC-cchHHh------CcccccccCceeecCCHH--HhcCC--C
Confidence 379999999999999999999987 67877766532211 111110 0111111 1123232222 33445 9
Q ss_pred EEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcCcccc
Q 012176 196 HVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVY 249 (469)
Q Consensus 196 ~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS~~vy 249 (469)
+||-+.... ....++..+.++|. ++|=.|+..=+
T Consensus 71 ~Vf~alP~~------------------~~~~~v~~a~~aG~--~VID~S~~fR~ 104 (343)
T PRK00436 71 VVFLALPHG------------------VSMDLAPQLLEAGV--KVIDLSADFRL 104 (343)
T ss_pred EEEECCCcH------------------HHHHHHHHHHhCCC--EEEECCcccCC
Confidence 999876431 23456666666664 78888875433
|
|
| >COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.036 Score=55.54 Aligned_cols=109 Identities=17% Similarity=0.201 Sum_probs=63.3
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCC-----------CChhHHHHHHHhhccCCeEEEEecCCCHHHHHH
Q 012176 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSY-----------YDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTK 187 (469)
Q Consensus 119 ~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~-----------~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~ 187 (469)
|+|.|.| +||+|...+..|.+.||+|++++..... +++.+....+......++.+ -.+.++
T Consensus 1 MkI~viG-tGYVGLv~g~~lA~~GHeVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~~gRl~f-------Ttd~~~ 72 (414)
T COG1004 1 MKITVIG-TGYVGLVTGACLAELGHEVVCVDIDESKVELLNKGISPIYEPGLEELLKENLASGRLRF-------TTDYEE 72 (414)
T ss_pred CceEEEC-CchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhccccCcEEE-------EcCHHH
Confidence 7899999 6999999999999999999999974432 11111111111111111111 123566
Q ss_pred hhccCCccEEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcC
Q 012176 188 LFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASS 245 (469)
Q Consensus 188 ~~~~~~~d~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS 245 (469)
+++.+ |++|-+.|...-. .+ ..++..+..+++...++..+.++|.+=|
T Consensus 73 a~~~a--dv~fIavgTP~~~---dg-----~aDl~~V~ava~~i~~~~~~~~vvV~KS 120 (414)
T COG1004 73 AVKDA--DVVFIAVGTPPDE---DG-----SADLSYVEAVAKDIGEILDGKAVVVIKS 120 (414)
T ss_pred HHhcC--CEEEEEcCCCCCC---CC-----CccHHHHHHHHHHHHhhcCCCeEEEEcC
Confidence 77777 9999888753211 11 1244445555555555544436666554
|
|
| >PRK10669 putative cation:proton antiport protein; Provisional | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.046 Score=58.78 Aligned_cols=71 Identities=20% Similarity=0.229 Sum_probs=54.0
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhh-ccCCccEE
Q 012176 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLF-DVVPFTHV 197 (469)
Q Consensus 119 ~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~-~~~~~d~V 197 (469)
-+|+|.|+ |-+|+++++.|.++|++|++++.+++ +.+.....+..++.||.+|++.++++- +.+ |.|
T Consensus 418 ~hiiI~G~-G~~G~~la~~L~~~g~~vvvId~d~~---------~~~~~~~~g~~~i~GD~~~~~~L~~a~i~~a--~~v 485 (558)
T PRK10669 418 NHALLVGY-GRVGSLLGEKLLAAGIPLVVIETSRT---------RVDELRERGIRAVLGNAANEEIMQLAHLDCA--RWL 485 (558)
T ss_pred CCEEEECC-ChHHHHHHHHHHHCCCCEEEEECCHH---------HHHHHHHCCCeEEEcCCCCHHHHHhcCcccc--CEE
Confidence 57899996 99999999999999999999997432 112222348999999999999887643 344 877
Q ss_pred EEcc
Q 012176 198 LHLA 201 (469)
Q Consensus 198 ih~A 201 (469)
+-+.
T Consensus 486 iv~~ 489 (558)
T PRK10669 486 LLTI 489 (558)
T ss_pred EEEc
Confidence 6554
|
|
| >PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.038 Score=55.70 Aligned_cols=34 Identities=26% Similarity=0.268 Sum_probs=29.1
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHCCC-cEEEEeCC
Q 012176 118 GMTVLVTGAAGFVGSHCSLALKKRGD-GVLGLDNF 151 (469)
Q Consensus 118 ~~~VlVtGatG~IG~~l~~~L~~~G~-~V~~~~r~ 151 (469)
+++|+|+||+|++|+.+++.|.++.+ +++++.+.
T Consensus 3 ~~~V~I~GatG~iG~~l~~~L~~~p~~el~~~~~s 37 (349)
T PRK08664 3 KLKVGILGATGMVGQRFVQLLANHPWFEVTALAAS 37 (349)
T ss_pred CcEEEEECCCCHHHHHHHHHHHcCCCceEEEEEcC
Confidence 47999999999999999999998754 88887553
|
|
| >cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.021 Score=50.08 Aligned_cols=74 Identities=16% Similarity=0.153 Sum_probs=47.4
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCC-CcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCc
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRG-DGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPF 194 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~ 194 (469)
.++++|+|+|+ |.+|..+++.|.+.| ++|++.+|+.+. ... ..... +...+..+..|. .++++++
T Consensus 17 ~~~~~i~iiG~-G~~g~~~a~~l~~~g~~~v~v~~r~~~~----~~~-~~~~~---~~~~~~~~~~~~---~~~~~~~-- 82 (155)
T cd01065 17 LKGKKVLILGA-GGAARAVAYALAELGAAKIVIVNRTLEK----AKA-LAERF---GELGIAIAYLDL---EELLAEA-- 82 (155)
T ss_pred CCCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEcCCHHH----HHH-HHHHH---hhcccceeecch---hhccccC--
Confidence 45689999997 999999999999996 789999985331 111 11111 111112233333 3345666
Q ss_pred cEEEEcccc
Q 012176 195 THVLHLAAQ 203 (469)
Q Consensus 195 d~Vih~Aa~ 203 (469)
|+||++...
T Consensus 83 Dvvi~~~~~ 91 (155)
T cd01065 83 DLIINTTPV 91 (155)
T ss_pred CEEEeCcCC
Confidence 999999865
|
Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann |
| >TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.086 Score=48.88 Aligned_cols=89 Identities=13% Similarity=0.083 Sum_probs=60.5
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCcc
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFT 195 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~d 195 (469)
.++++|+|.|| |-+|..-++.|++.|++|++++.... .......+..++.++.++.... .++++ +
T Consensus 7 l~gk~vlVvGg-G~va~rk~~~Ll~~ga~VtVvsp~~~-------~~l~~l~~~~~i~~~~~~~~~~-----dl~~~--~ 71 (205)
T TIGR01470 7 LEGRAVLVVGG-GDVALRKARLLLKAGAQLRVIAEELE-------SELTLLAEQGGITWLARCFDAD-----ILEGA--F 71 (205)
T ss_pred cCCCeEEEECc-CHHHHHHHHHHHHCCCEEEEEcCCCC-------HHHHHHHHcCCEEEEeCCCCHH-----HhCCc--E
Confidence 56789999997 99999999999999999999975322 1222233345888988887632 24555 7
Q ss_pred EEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCC
Q 012176 196 HVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNP 236 (469)
Q Consensus 196 ~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~ 236 (469)
.||-+-+. + .-...+...|++.++
T Consensus 72 lVi~at~d---------~--------~ln~~i~~~a~~~~i 95 (205)
T TIGR01470 72 LVIAATDD---------E--------ELNRRVAHAARARGV 95 (205)
T ss_pred EEEECCCC---------H--------HHHHHHHHHHHHcCC
Confidence 77754332 1 113467777877764
|
This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms. |
| >PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.025 Score=56.12 Aligned_cols=82 Identities=13% Similarity=0.068 Sum_probs=49.5
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHH--hhccCCeE--EEEecCCCHHHHHHhhccCC
Q 012176 118 GMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQK--LLQKHQVF--IVEGDLNDAPLLTKLFDVVP 193 (469)
Q Consensus 118 ~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~v~--~v~~Dl~d~~~l~~~~~~~~ 193 (469)
-++|.|+|+ |-+|..++..|+..|++|++.++..+..+......... .+...+.. .....+.-..+++++++++
T Consensus 7 i~~VaVIGa-G~MG~giA~~~a~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l~~av~~a- 84 (321)
T PRK07066 7 IKTFAAIGS-GVIGSGWVARALAHGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVATIEACVADA- 84 (321)
T ss_pred CCEEEEECc-CHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCCHHHHhcCC-
Confidence 368999996 99999999999999999999998654322211111110 01111110 0001112123466788888
Q ss_pred ccEEEEccc
Q 012176 194 FTHVLHLAA 202 (469)
Q Consensus 194 ~d~Vih~Aa 202 (469)
|.|+-+.-
T Consensus 85 -DlViEavp 92 (321)
T PRK07066 85 -DFIQESAP 92 (321)
T ss_pred -CEEEECCc
Confidence 99998863
|
|
| >TIGR01915 npdG NADPH-dependent F420 reductase | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.026 Score=52.84 Aligned_cols=35 Identities=26% Similarity=0.282 Sum_probs=32.0
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCC
Q 012176 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNS 153 (469)
Q Consensus 119 ~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~ 153 (469)
|+|.|+||+|.+|..++..|.+.|++|++.+|+.+
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~~ 35 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDLE 35 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCHH
Confidence 67999999999999999999999999999998554
|
This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase. |
| >PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.027 Score=58.49 Aligned_cols=79 Identities=22% Similarity=0.185 Sum_probs=55.0
Q ss_pred CCCCCEEEEEcC----------------CChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEec
Q 012176 115 RPNGMTVLVTGA----------------AGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGD 178 (469)
Q Consensus 115 ~~~~~~VlVtGa----------------tG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~D 178 (469)
...||+||||+| ||-.|.+|++++..+|++|+.+.-... .....+++++..
T Consensus 253 ~l~gkkvLITaGpT~E~IDpVR~ItN~SSGkmG~alA~aa~~~GA~VtlI~Gp~~------------~~~p~~v~~i~V- 319 (475)
T PRK13982 253 PLAGRRVLITAGPTHEPIDPVRYIANRSSGKQGFAIAAAAAAAGAEVTLISGPVD------------LADPQGVKVIHV- 319 (475)
T ss_pred ccCCCEEEEecCCccccCCcceeeCCCCchHHHHHHHHHHHHCCCcEEEEeCCcC------------CCCCCCceEEEe-
Confidence 478999999965 678999999999999999999873211 012236666654
Q ss_pred CCCHHHHHHhh-ccCCccEEEEcccccChh
Q 012176 179 LNDAPLLTKLF-DVVPFTHVLHLAAQAGVR 207 (469)
Q Consensus 179 l~d~~~l~~~~-~~~~~d~Vih~Aa~~~~~ 207 (469)
...+++.+++ +..+.|++|++|+..+.+
T Consensus 320 -~ta~eM~~av~~~~~~Di~I~aAAVaDyr 348 (475)
T PRK13982 320 -ESARQMLAAVEAALPADIAIFAAAVADWR 348 (475)
T ss_pred -cCHHHHHHHHHhhCCCCEEEEecccccee
Confidence 3444444444 333569999999986554
|
|
| >cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.059 Score=53.83 Aligned_cols=36 Identities=33% Similarity=0.379 Sum_probs=32.5
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCC
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNF 151 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~ 151 (469)
..+.+|+|+||+|.+|..+++.+...|.+|+++++.
T Consensus 150 ~~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~~ 185 (338)
T cd08295 150 KKGETVFVSAASGAVGQLVGQLAKLKGCYVVGSAGS 185 (338)
T ss_pred CCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCC
Confidence 467899999999999999999999999999988874
|
This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in |
| >PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.071 Score=55.62 Aligned_cols=125 Identities=15% Similarity=0.131 Sum_probs=73.0
Q ss_pred CCEEE----EEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCC
Q 012176 118 GMTVL----VTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVP 193 (469)
Q Consensus 118 ~~~Vl----VtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~ 193 (469)
+..+| |+||+|.+|..+++.|...|.+|+...+... ... ..+..+
T Consensus 34 ~~~~~~~~~l~~~~~g~~~~~~~~~~~~g~~v~~~~~~~~---------~~~----------------------~~~~~~ 82 (450)
T PRK08261 34 GQPLLDGPVLVGGAGRLAEALAALLAGLGYDVVANNDGGL---------TWA----------------------AGWGDR 82 (450)
T ss_pred CCCCCCCceEEccCchhHHHHHHHHhhCCCeeeecCcccc---------ccc----------------------cCcCCc
Confidence 34556 8889999999999999999999998765221 000 001112
Q ss_pred ccEEEEcccccChhhhccChHHHHHHHHHHHHHHHHHH-HhcCCCCeEEEEcCccccCCCCCCCCCCCCCCCCCCChHHH
Q 012176 194 FTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVC-KSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAA 272 (469)
Q Consensus 194 ~d~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa-~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y~~ 272 (469)
++.+++-+... ..++. +.+....++++ +......+||+++|..... ....|+.
T Consensus 83 ~~~~~~d~~~~------~~~~~-----l~~~~~~~~~~l~~l~~~griv~i~s~~~~~---------------~~~~~~~ 136 (450)
T PRK08261 83 FGALVFDATGI------TDPAD-----LKALYEFFHPVLRSLAPCGRVVVLGRPPEAA---------------ADPAAAA 136 (450)
T ss_pred ccEEEEECCCC------CCHHH-----HHHHHHHHHHHHHhccCCCEEEEEccccccC---------------CchHHHH
Confidence 34322222110 11111 11222222222 2222224899999865431 1235999
Q ss_pred HHHHHHHHHHHHHHHh--CCcEEEEeecc
Q 012176 273 TKKAGEEIAHTYNHIY--GLALTGLRFFT 299 (469)
Q Consensus 273 sK~~~E~~~~~~~~~~--gi~~~ilRp~~ 299 (469)
+|.+.+.+++.++.++ ++.+..+.++.
T Consensus 137 akaal~gl~rsla~E~~~gi~v~~i~~~~ 165 (450)
T PRK08261 137 AQRALEGFTRSLGKELRRGATAQLVYVAP 165 (450)
T ss_pred HHHHHHHHHHHHHHHhhcCCEEEEEecCC
Confidence 9999999999998875 67787787653
|
|
| >PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.091 Score=53.83 Aligned_cols=112 Identities=21% Similarity=0.127 Sum_probs=69.0
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCC-cEEEEeCCCCCC----------Ch----hHHHHHHHhh----ccCCeEEEE
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGD-GVLGLDNFNSYY----------DP----SLKRARQKLL----QKHQVFIVE 176 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~-~V~~~~r~~~~~----------~~----~~~~~~~~~~----~~~~v~~v~ 176 (469)
....+|+|.|+ |.+|..+++.|...|. +++++|...-.. .. .+.......+ ..-.++.+.
T Consensus 40 L~~~~VlviG~-GGlGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~i~~~~ 118 (392)
T PRK07878 40 LKNARVLVIGA-GGLGSPTLLYLAAAGVGTLGIVEFDVVDESNLQRQVIHGQSDVGRSKAQSARDSIVEINPLVNVRLHE 118 (392)
T ss_pred HhcCCEEEECC-CHHHHHHHHHHHHcCCCeEEEECCCEecCcccccccccChhcCCChHHHHHHHHHHHhCCCcEEEEEe
Confidence 45568999997 9999999999999986 566665332110 00 0111111111 112455555
Q ss_pred ecCCCHHHHHHhhccCCccEEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcCccccC
Q 012176 177 GDLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYG 250 (469)
Q Consensus 177 ~Dl~d~~~l~~~~~~~~~d~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS~~vyg 250 (469)
.+++. +...++++++ |+||.+... ...-..+-++|.+.++ .+|+.+..+.+|
T Consensus 119 ~~i~~-~~~~~~~~~~--D~Vvd~~d~-----------------~~~r~~ln~~~~~~~~--p~v~~~~~g~~G 170 (392)
T PRK07878 119 FRLDP-SNAVELFSQY--DLILDGTDN-----------------FATRYLVNDAAVLAGK--PYVWGSIYRFEG 170 (392)
T ss_pred ccCCh-hHHHHHHhcC--CEEEECCCC-----------------HHHHHHHHHHHHHcCC--CEEEEEeccCEE
Confidence 55553 4567788877 999998632 2222345578888886 488887776665
|
|
| >cd08259 Zn_ADH5 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.085 Score=52.08 Aligned_cols=36 Identities=42% Similarity=0.476 Sum_probs=32.7
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCC
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNF 151 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~ 151 (469)
..+.+|+|+||+|.+|..+++.+...|.+|+++++.
T Consensus 161 ~~~~~vlI~ga~g~vG~~~~~~a~~~g~~v~~~~~~ 196 (332)
T cd08259 161 KKGDTVLVTGAGGGVGIHAIQLAKALGARVIAVTRS 196 (332)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHcCCeEEEEeCC
Confidence 456799999999999999999999999999999874
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. |
| >PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.059 Score=54.83 Aligned_cols=35 Identities=26% Similarity=0.338 Sum_probs=32.5
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeC
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDN 150 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r 150 (469)
+..++|.|.||.|.+|..+++.|.+.|++|++.+|
T Consensus 96 ~~~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~ 130 (374)
T PRK11199 96 PDLRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQ 130 (374)
T ss_pred cccceEEEEcCCChhhHHHHHHHHHCCCeEEEeCC
Confidence 35589999999999999999999999999999997
|
|
| >cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.11 Score=49.26 Aligned_cols=109 Identities=14% Similarity=0.123 Sum_probs=67.5
Q ss_pred EEEEEcCCChhHHHHHHHHHHCCC-cEEEEeCCCCCC----------ChhHHHHHH----Hh----hccCCeEEEEecCC
Q 012176 120 TVLVTGAAGFVGSHCSLALKKRGD-GVLGLDNFNSYY----------DPSLKRARQ----KL----LQKHQVFIVEGDLN 180 (469)
Q Consensus 120 ~VlVtGatG~IG~~l~~~L~~~G~-~V~~~~r~~~~~----------~~~~~~~~~----~~----~~~~~v~~v~~Dl~ 180 (469)
+|+|.|+ |.+|..+++.|...|. +++++|...-.. .....+.+. .. ...-.++.+..++.
T Consensus 1 kVlvvG~-GGlG~eilk~La~~Gvg~i~ivD~D~Ve~sNLnRQflf~~~dvGk~Ka~va~~~l~~~np~v~i~~~~~~i~ 79 (234)
T cd01484 1 KVLLVGA-GGIGCELLKNLALMGFGQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKSEVAAEAVNDRNPNCKVVPYQNKVG 79 (234)
T ss_pred CEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCCEEcchhhccccCCChhhCChHHHHHHHHHHHHHCCCCEEEEEeccCC
Confidence 4899995 9999999999999986 566665432110 011111111 11 11224666777776
Q ss_pred CHHHH-HHhhccCCccEEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcCccccC
Q 012176 181 DAPLL-TKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYG 250 (469)
Q Consensus 181 d~~~l-~~~~~~~~~d~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS~~vyg 250 (469)
+.+.. ...+++. |+||.+.. |+..-..+-+.|.+.++ .+|..++.+.+|
T Consensus 80 ~~~~~~~~f~~~~--DvVi~a~D-----------------n~~aR~~ln~~c~~~~i--plI~~g~~G~~G 129 (234)
T cd01484 80 PEQDFNDTFFEQF--HIIVNALD-----------------NIIARRYVNGMLIFLIV--PLIESGTEGFKG 129 (234)
T ss_pred hhhhchHHHHhCC--CEEEECCC-----------------CHHHHHHHHHHHHHcCC--CEEEEcccCCce
Confidence 54433 4566766 99998753 34444556677888886 488887766655
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou |
| >COG2085 Predicted dinucleotide-binding enzymes [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.017 Score=53.00 Aligned_cols=34 Identities=26% Similarity=0.311 Sum_probs=28.7
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCC
Q 012176 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNS 153 (469)
Q Consensus 119 ~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~ 153 (469)
|++.| ||+|.||..|+++|.+.||+|++..|+.+
T Consensus 2 ~~~~i-~GtGniG~alA~~~a~ag~eV~igs~r~~ 35 (211)
T COG2085 2 MIIAI-IGTGNIGSALALRLAKAGHEVIIGSSRGP 35 (211)
T ss_pred cEEEE-eccChHHHHHHHHHHhCCCeEEEecCCCh
Confidence 55565 56899999999999999999999977554
|
|
| >PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.069 Score=47.51 Aligned_cols=66 Identities=18% Similarity=0.131 Sum_probs=43.8
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCccEE
Q 012176 118 GMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTHV 197 (469)
Q Consensus 118 ~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~d~V 197 (469)
+|+|.+.|- |-+|+.+++.|++.|++|++.+|..+ +...+...+++.. ++.+++++++ |+|
T Consensus 1 m~~Ig~IGl-G~mG~~~a~~L~~~g~~v~~~d~~~~---------~~~~~~~~g~~~~-------~s~~e~~~~~--dvv 61 (163)
T PF03446_consen 1 MMKIGFIGL-GNMGSAMARNLAKAGYEVTVYDRSPE---------KAEALAEAGAEVA-------DSPAEAAEQA--DVV 61 (163)
T ss_dssp -BEEEEE---SHHHHHHHHHHHHTTTEEEEEESSHH---------HHHHHHHTTEEEE-------SSHHHHHHHB--SEE
T ss_pred CCEEEEEch-HHHHHHHHHHHHhcCCeEEeeccchh---------hhhhhHHhhhhhh-------hhhhhHhhcc--cce
Confidence 478999995 99999999999999999999998431 1111122232222 2456677777 999
Q ss_pred EEccc
Q 012176 198 LHLAA 202 (469)
Q Consensus 198 ih~Aa 202 (469)
|-+..
T Consensus 62 i~~v~ 66 (163)
T PF03446_consen 62 ILCVP 66 (163)
T ss_dssp EE-SS
T ss_pred Eeecc
Confidence 98764
|
1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A .... |
| >TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.1 Score=51.73 Aligned_cols=36 Identities=39% Similarity=0.442 Sum_probs=32.2
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCC
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNF 151 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~ 151 (469)
..+.+|||+||+|.+|..+++.+...|.+|+++++.
T Consensus 137 ~~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s 172 (325)
T TIGR02825 137 KGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGS 172 (325)
T ss_pred CCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCC
Confidence 457899999999999999999999999999988873
|
Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase. |
| >TIGR01771 L-LDH-NAD L-lactate dehydrogenase | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.13 Score=50.54 Aligned_cols=164 Identities=14% Similarity=0.098 Sum_probs=94.3
Q ss_pred EEcCCChhHHHHHHHHHHCCC--cEEEEeCCCCCCChhHHHHHHHh-hccCCeEEEEecCCCHHHHHHhhccCCccEEEE
Q 012176 123 VTGAAGFVGSHCSLALKKRGD--GVLGLDNFNSYYDPSLKRARQKL-LQKHQVFIVEGDLNDAPLLTKLFDVVPFTHVLH 199 (469)
Q Consensus 123 VtGatG~IG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~-~~~~~v~~v~~Dl~d~~~l~~~~~~~~~d~Vih 199 (469)
|.|+ |.||..++..|+..+. ++.++|+.+.............. .....+.+.. .|. +.++++ |+||-
T Consensus 1 iIGa-G~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~i~~---~~~----~~~~da--DivVi 70 (299)
T TIGR01771 1 IIGA-GNVGSSTAFALLNQGIADEIVLIDINKDKAEGEAMDLQHAASFLPTPKKIRS---GDY----SDCKDA--DLVVI 70 (299)
T ss_pred CCCc-CHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHhhcccCCCeEEec---CCH----HHHCCC--CEEEE
Confidence 4575 9999999999988864 79999986543221111111110 1112333332 232 356777 99999
Q ss_pred cccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcCcc-c--cCCCCCCCCCCCCCCCCCCChHHH-HHH
Q 012176 200 LAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSS-V--YGLNTQVPFSESHRTDQPASLYAA-TKK 275 (469)
Q Consensus 200 ~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS~~-v--yg~~~~~~~~E~~~~~~p~~~Y~~-sK~ 275 (469)
.||... -...+..+.+..|+.-.+.+.+.+++++....+|.+|-.. + |-. .... ..++....|. +..
T Consensus 71 tag~~r--k~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsNP~d~~t~~~-----~~~s--g~p~~~viG~gt~L 141 (299)
T TIGR01771 71 TAGAPQ--KPGETRLELVGRNVRIMKSIVPEVVKSGFDGIFLVATNPVDILTYVA-----WKLS--GFPKNRVIGSGTVL 141 (299)
T ss_pred CCCCCC--CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHH-----HHHh--CCCHHHEEeccchH
Confidence 999732 2234567889999999999999999888776777777421 0 000 0000 0011111222 222
Q ss_pred HHHHHHHHHHHHhCCcEEEEeecceecCCCC
Q 012176 276 AGEEIAHTYNHIYGLALTGLRFFTVYGPWGR 306 (469)
Q Consensus 276 ~~E~~~~~~~~~~gi~~~ilRp~~v~Gp~~~ 306 (469)
...++-..+++..+++..-++. +|+|..+.
T Consensus 142 Ds~R~~~~la~~l~v~~~~V~~-~v~GeHG~ 171 (299)
T TIGR01771 142 DTARLRYLLAEKLGVDPQSVHA-YIIGEHGD 171 (299)
T ss_pred HHHHHHHHHHHHhCcCcCeEEE-EEEecCCC
Confidence 3344444555666887777774 57886543
|
This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases. |
| >PLN02383 aspartate semialdehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.043 Score=55.07 Aligned_cols=29 Identities=31% Similarity=0.402 Sum_probs=25.6
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCc
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDG 144 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~ 144 (469)
..+++|.|.||||++|..|++.|.+++|.
T Consensus 5 ~~~~kVaVvGAtG~vG~eLlrlL~~~~hP 33 (344)
T PLN02383 5 ENGPSVAIVGVTGAVGQEFLSVLTDRDFP 33 (344)
T ss_pred CCCCeEEEEcCCChHHHHHHHHHHhCCCC
Confidence 34578999999999999999999998873
|
|
| >PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.074 Score=57.85 Aligned_cols=95 Identities=20% Similarity=0.212 Sum_probs=66.3
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHh-hccCCccE
Q 012176 118 GMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKL-FDVVPFTH 196 (469)
Q Consensus 118 ~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~-~~~~~~d~ 196 (469)
.++|+|.|. |-+|+.+++.|.++|+++++++.+.+ +.+.....+..++.||.+|++.++++ ++.+ |.
T Consensus 400 ~~~vII~G~-Gr~G~~va~~L~~~g~~vvvID~d~~---------~v~~~~~~g~~v~~GDat~~~~L~~agi~~A--~~ 467 (621)
T PRK03562 400 QPRVIIAGF-GRFGQIVGRLLLSSGVKMTVLDHDPD---------HIETLRKFGMKVFYGDATRMDLLESAGAAKA--EV 467 (621)
T ss_pred cCcEEEEec-ChHHHHHHHHHHhCCCCEEEEECCHH---------HHHHHHhcCCeEEEEeCCCHHHHHhcCCCcC--CE
Confidence 468999996 99999999999999999999997432 12222234889999999999988754 2334 88
Q ss_pred EEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEE
Q 012176 197 VLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIV 241 (469)
Q Consensus 197 Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V 241 (469)
||-+-.. -+....++..+++.....+++
T Consensus 468 vvv~~~d-----------------~~~n~~i~~~ar~~~p~~~ii 495 (621)
T PRK03562 468 LINAIDD-----------------PQTSLQLVELVKEHFPHLQII 495 (621)
T ss_pred EEEEeCC-----------------HHHHHHHHHHHHHhCCCCeEE
Confidence 8766532 223345666677765442443
|
|
| >TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.044 Score=53.59 Aligned_cols=70 Identities=17% Similarity=0.183 Sum_probs=49.9
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCc
Q 012176 115 RPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPF 194 (469)
Q Consensus 115 ~~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~ 194 (469)
...+++|+|+|. |.+|+.+++.|...|.+|++.+|..+ ...+ . ...+...+ +.+.+.++++++
T Consensus 148 ~l~gk~v~IiG~-G~iG~avA~~L~~~G~~V~v~~R~~~----~~~~----~-~~~g~~~~-----~~~~l~~~l~~a-- 210 (287)
T TIGR02853 148 TIHGSNVMVLGF-GRTGMTIARTFSALGARVFVGARSSA----DLAR----I-TEMGLIPF-----PLNKLEEKVAEI-- 210 (287)
T ss_pred CCCCCEEEEEcC-hHHHHHHHHHHHHCCCEEEEEeCCHH----HHHH----H-HHCCCeee-----cHHHHHHHhccC--
Confidence 357899999997 88999999999999999999998432 1111 1 11122222 244567778777
Q ss_pred cEEEEcc
Q 012176 195 THVLHLA 201 (469)
Q Consensus 195 d~Vih~A 201 (469)
|+||++.
T Consensus 211 DiVint~ 217 (287)
T TIGR02853 211 DIVINTI 217 (287)
T ss_pred CEEEECC
Confidence 9999976
|
This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA. |
| >PRK00258 aroE shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.033 Score=54.24 Aligned_cols=36 Identities=22% Similarity=0.259 Sum_probs=32.5
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCC-CcEEEEeCCC
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRG-DGVLGLDNFN 152 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G-~~V~~~~r~~ 152 (469)
..+++|+|+|+ |.+|+.++..|.+.| .+|++++|..
T Consensus 121 ~~~k~vlVlGa-Gg~a~ai~~aL~~~g~~~V~v~~R~~ 157 (278)
T PRK00258 121 LKGKRILILGA-GGAARAVILPLLDLGVAEITIVNRTV 157 (278)
T ss_pred CCCCEEEEEcC-cHHHHHHHHHHHHcCCCEEEEEeCCH
Confidence 56789999997 999999999999999 7999999954
|
|
| >KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=95.70 E-value=0.069 Score=51.93 Aligned_cols=100 Identities=13% Similarity=0.166 Sum_probs=68.7
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCccE
Q 012176 117 NGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTH 196 (469)
Q Consensus 117 ~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~d~ 196 (469)
.++.|.|+|+.| ||.-=++...+-|++|+++++.+. .+.+....-+.+.+..-..|++.++++.+.. |.
T Consensus 181 pG~~vgI~GlGG-LGh~aVq~AKAMG~rV~vis~~~~--------kkeea~~~LGAd~fv~~~~d~d~~~~~~~~~--dg 249 (360)
T KOG0023|consen 181 PGKWVGIVGLGG-LGHMAVQYAKAMGMRVTVISTSSK--------KKEEAIKSLGADVFVDSTEDPDIMKAIMKTT--DG 249 (360)
T ss_pred CCcEEEEecCcc-cchHHHHHHHHhCcEEEEEeCCch--------hHHHHHHhcCcceeEEecCCHHHHHHHHHhh--cC
Confidence 689999999988 998888888888999999998653 1222222335566554445888888888877 77
Q ss_pred EEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcC
Q 012176 197 VLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASS 245 (469)
Q Consensus 197 Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS 245 (469)
++|++..... . ....+++.++..| .+|+++-
T Consensus 250 ~~~~v~~~a~----~-----------~~~~~~~~lk~~G---t~V~vg~ 280 (360)
T KOG0023|consen 250 GIDTVSNLAE----H-----------ALEPLLGLLKVNG---TLVLVGL 280 (360)
T ss_pred cceeeeeccc----c-----------chHHHHHHhhcCC---EEEEEeC
Confidence 7777653210 1 1235566666665 7898874
|
|
| >PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ] | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.055 Score=49.29 Aligned_cols=33 Identities=36% Similarity=0.609 Sum_probs=26.7
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCC
Q 012176 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFN 152 (469)
Q Consensus 119 ~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~ 152 (469)
|+|.|.| .||+|.-++..|++.||+|++++.+.
T Consensus 1 M~I~ViG-lGyvGl~~A~~lA~~G~~V~g~D~~~ 33 (185)
T PF03721_consen 1 MKIAVIG-LGYVGLPLAAALAEKGHQVIGVDIDE 33 (185)
T ss_dssp -EEEEE---STTHHHHHHHHHHTTSEEEEE-S-H
T ss_pred CEEEEEC-CCcchHHHHHHHHhCCCEEEEEeCCh
Confidence 7899998 69999999999999999999999743
|
The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D .... |
| >PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.66 E-value=0.033 Score=54.22 Aligned_cols=57 Identities=14% Similarity=0.176 Sum_probs=46.2
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCc
Q 012176 115 RPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPF 194 (469)
Q Consensus 115 ~~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~ 194 (469)
..++++|+|.|++|.+|+.++..|+++|..|+++.|. ...+.+.++++
T Consensus 156 ~l~Gk~vvViG~gg~vGkpia~~L~~~gatVtv~~~~------------------------------t~~L~~~~~~a-- 203 (283)
T PRK14192 156 ELAGKHAVVVGRSAILGKPMAMMLLNANATVTICHSR------------------------------TQNLPELVKQA-- 203 (283)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHhCCCEEEEEeCC------------------------------chhHHHHhccC--
Confidence 3688999999999999999999999999999988761 12344555666
Q ss_pred cEEEEcccc
Q 012176 195 THVLHLAAQ 203 (469)
Q Consensus 195 d~Vih~Aa~ 203 (469)
|+||++.|.
T Consensus 204 DIvI~AtG~ 212 (283)
T PRK14192 204 DIIVGAVGK 212 (283)
T ss_pred CEEEEccCC
Confidence 999999864
|
|
| >PRK06849 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.66 E-value=0.049 Score=55.76 Aligned_cols=79 Identities=14% Similarity=0.147 Sum_probs=52.0
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCH----HHHHHhhccC
Q 012176 117 NGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDA----PLLTKLFDVV 192 (469)
Q Consensus 117 ~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~----~~l~~~~~~~ 192 (469)
++|+|||||+...+|..+++.|.+.|++|++++...... . ......+ +...+...-.|. +.+.++++..
T Consensus 3 ~~~~VLI~G~~~~~~l~iar~l~~~G~~Vi~~d~~~~~~----~-~~s~~~d--~~~~~p~p~~d~~~~~~~L~~i~~~~ 75 (389)
T PRK06849 3 TKKTVLITGARAPAALELARLFHNAGHTVILADSLKYPL----S-RFSRAVD--GFYTIPSPRWDPDAYIQALLSIVQRE 75 (389)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchHH----H-HHHHhhh--heEEeCCCCCCHHHHHHHHHHHHHHc
Confidence 568999999999999999999999999999998754211 1 1111111 222222122233 4455666666
Q ss_pred CccEEEEccc
Q 012176 193 PFTHVLHLAA 202 (469)
Q Consensus 193 ~~d~Vih~Aa 202 (469)
++|+||-+..
T Consensus 76 ~id~vIP~~e 85 (389)
T PRK06849 76 NIDLLIPTCE 85 (389)
T ss_pred CCCEEEECCh
Confidence 7899998765
|
|
| >COG0027 PurT Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase) [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.038 Score=53.25 Aligned_cols=75 Identities=15% Similarity=0.204 Sum_probs=57.8
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCcc
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFT 195 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~d 195 (469)
....+|++.| +|-+|+.++-++.+.|.+|+++||...... ..- --.-...|+.|.+.+..+++..+||
T Consensus 10 ~~a~kvmLLG-SGELGKEvaIe~QRLG~eViAVDrY~~APA-----mqV------Ahrs~Vi~MlD~~al~avv~rekPd 77 (394)
T COG0027 10 PQATKVMLLG-SGELGKEVAIEAQRLGVEVIAVDRYANAPA-----MQV------AHRSYVIDMLDGDALRAVVEREKPD 77 (394)
T ss_pred CCCeEEEEec-CCccchHHHHHHHhcCCEEEEecCcCCChh-----hhh------hhheeeeeccCHHHHHHHHHhhCCC
Confidence 4456799988 699999999999999999999999554111 000 1123557999999999999999999
Q ss_pred EEEEccc
Q 012176 196 HVLHLAA 202 (469)
Q Consensus 196 ~Vih~Aa 202 (469)
++|--..
T Consensus 78 ~IVpEiE 84 (394)
T COG0027 78 YIVPEIE 84 (394)
T ss_pred eeeehhh
Confidence 9886543
|
|
| >PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=95.59 E-value=0.027 Score=55.11 Aligned_cols=34 Identities=21% Similarity=0.236 Sum_probs=31.0
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCC
Q 012176 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNS 153 (469)
Q Consensus 119 ~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~ 153 (469)
++|.|.|+ |.+|..++..|++.|++|++.+++.+
T Consensus 2 ~~V~VIG~-G~mG~~iA~~la~~G~~V~~~d~~~~ 35 (288)
T PRK09260 2 EKLVVVGA-GVMGRGIAYVFAVSGFQTTLVDIKQE 35 (288)
T ss_pred cEEEEECc-cHHHHHHHHHHHhCCCcEEEEeCCHH
Confidence 47999997 99999999999999999999998655
|
|
| >PRK05600 thiamine biosynthesis protein ThiF; Validated | Back alignment and domain information |
|---|
Probab=95.58 E-value=0.15 Score=51.75 Aligned_cols=112 Identities=20% Similarity=0.217 Sum_probs=70.2
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCC-cEEEEeCCCCC---------C-Ch----hHHHHHHHhh----ccCCeEEEE
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGD-GVLGLDNFNSY---------Y-DP----SLKRARQKLL----QKHQVFIVE 176 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~-~V~~~~r~~~~---------~-~~----~~~~~~~~~~----~~~~v~~v~ 176 (469)
....+|+|.|+ |.+|..+++.|...|. +++++|...-. + .. .+.......+ ..-.++.+.
T Consensus 39 l~~~~VliiG~-GglG~~v~~~La~~Gvg~i~ivD~D~ve~sNL~RQ~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~~ 117 (370)
T PRK05600 39 LHNARVLVIGA-GGLGCPAMQSLASAGVGTITLIDDDTVDVSNIHRQILFGASDVGRPKVEVAAERLKEIQPDIRVNALR 117 (370)
T ss_pred hcCCcEEEECC-CHHHHHHHHHHHHcCCCEEEEEeCCEEccccccccccCChhHCCCHHHHHHHHHHHHHCCCCeeEEee
Confidence 55678999996 9999999999999995 78887754211 0 00 1111111111 122455666
Q ss_pred ecCCCHHHHHHhhccCCccEEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcCccccC
Q 012176 177 GDLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYG 250 (469)
Q Consensus 177 ~Dl~d~~~l~~~~~~~~~d~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS~~vyg 250 (469)
..++ .+.+.++++++ |+||.+... ...-..+-++|.+.++. +|+.+..+-+|
T Consensus 118 ~~i~-~~~~~~~~~~~--DlVid~~Dn-----------------~~~r~~in~~~~~~~iP--~v~~~~~g~~G 169 (370)
T PRK05600 118 ERLT-AENAVELLNGV--DLVLDGSDS-----------------FATKFLVADAAEITGTP--LVWGTVLRFHG 169 (370)
T ss_pred eecC-HHHHHHHHhCC--CEEEECCCC-----------------HHHHHHHHHHHHHcCCC--EEEEEEecCEE
Confidence 5564 45677888887 999998743 22233455678888864 77776544443
|
|
| >PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.56 E-value=0.074 Score=52.60 Aligned_cols=34 Identities=24% Similarity=0.166 Sum_probs=30.9
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCC
Q 012176 117 NGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNF 151 (469)
Q Consensus 117 ~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~ 151 (469)
.+|+|.|.|+ |-+|..+++.|.+.||+|++.+|.
T Consensus 3 ~~m~I~iiG~-G~~G~~lA~~l~~~G~~V~~~~r~ 36 (308)
T PRK14619 3 QPKTIAILGA-GAWGSTLAGLASANGHRVRVWSRR 36 (308)
T ss_pred CCCEEEEECc-cHHHHHHHHHHHHCCCEEEEEeCC
Confidence 4578999985 999999999999999999999984
|
|
| >COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.18 Score=47.22 Aligned_cols=116 Identities=19% Similarity=0.193 Sum_probs=72.8
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCC-cEEEEeCCCCCCC---hhHH-------HHH----HHhhc--cCCeEEEEe-
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGD-GVLGLDNFNSYYD---PSLK-------RAR----QKLLQ--KHQVFIVEG- 177 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~-~V~~~~r~~~~~~---~~~~-------~~~----~~~~~--~~~v~~v~~- 177 (469)
.+.-+|+|.|. |.+|++.+++|.+.|. +++++|-..-... ..+. +.+ ++... .+.+++...
T Consensus 28 l~~~~V~VvGi-GGVGSw~veALaRsGig~itlID~D~v~vTN~NRQi~A~~~~iGk~Kv~vm~eri~~InP~c~V~~~~ 106 (263)
T COG1179 28 LKQAHVCVVGI-GGVGSWAVEALARSGIGRITLIDMDDVCVTNTNRQIHALLGDIGKPKVEVMKERIKQINPECEVTAIN 106 (263)
T ss_pred HhhCcEEEEec-CchhHHHHHHHHHcCCCeEEEEecccccccccchhhHhhhhhcccHHHHHHHHHHHhhCCCceEeehH
Confidence 45568999996 9999999999999986 4555543221110 0111 111 11111 134444443
Q ss_pred cCCCHHHHHHhhccCCccEEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcCccccCCCCC
Q 012176 178 DLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQ 254 (469)
Q Consensus 178 Dl~d~~~l~~~~~~~~~d~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS~~vyg~~~~ 254 (469)
|.-.++.+++++.. .||+||++.- |+..=..|+..|++++. -++||+++-+..++
T Consensus 107 ~f~t~en~~~~~~~-~~DyvIDaiD-----------------~v~~Kv~Li~~c~~~ki----~vIss~Gag~k~DP 161 (263)
T COG1179 107 DFITEENLEDLLSK-GFDYVIDAID-----------------SVRAKVALIAYCRRNKI----PVISSMGAGGKLDP 161 (263)
T ss_pred hhhCHhHHHHHhcC-CCCEEEEchh-----------------hhHHHHHHHHHHHHcCC----CEEeeccccCCCCC
Confidence 45577888888876 7899999863 45555678889999875 35677776665544
|
|
| >COG2130 Putative NADP-dependent oxidoreductases [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.53 E-value=0.11 Score=50.14 Aligned_cols=107 Identities=21% Similarity=0.143 Sum_probs=66.4
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccC--
Q 012176 115 RPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV-- 192 (469)
Q Consensus 115 ~~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~-- 192 (469)
..++.+|+|+||+|-+|+.+.+-..-.|++|+++.-+.+ +.+.....+ ++.. -.|...++..+.+-+.+
T Consensus 148 pk~GetvvVSaAaGaVGsvvgQiAKlkG~rVVGiaGg~e-----K~~~l~~~l---GfD~-~idyk~~d~~~~L~~a~P~ 218 (340)
T COG2130 148 PKAGETVVVSAAAGAVGSVVGQIAKLKGCRVVGIAGGAE-----KCDFLTEEL---GFDA-GIDYKAEDFAQALKEACPK 218 (340)
T ss_pred CCCCCEEEEEecccccchHHHHHHHhhCCeEEEecCCHH-----HHHHHHHhc---CCce-eeecCcccHHHHHHHHCCC
Confidence 357899999999999999988888888999999975332 111112212 2111 12333332222222222
Q ss_pred CccEEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHH-hcCCCCeEEEEcCccccCCC
Q 012176 193 PFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCK-SVNPQPSIVWASSSSVYGLN 252 (469)
Q Consensus 193 ~~d~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~-~~~~~~~~V~~SS~~vyg~~ 252 (469)
++|+.|.|.|. .+++++. ..+...||+.+.-++-|+..
T Consensus 219 GIDvyfeNVGg----------------------~v~DAv~~~ln~~aRi~~CG~IS~YN~~ 257 (340)
T COG2130 219 GIDVYFENVGG----------------------EVLDAVLPLLNLFARIPVCGAISQYNAP 257 (340)
T ss_pred CeEEEEEcCCc----------------------hHHHHHHHhhccccceeeeeehhhcCCC
Confidence 56999999986 3444432 22344589999999999755
|
|
| >cd08253 zeta_crystallin Zeta-crystallin with NADP-dependent quinone reductase activity (QOR) | Back alignment and domain information |
|---|
Probab=95.53 E-value=0.24 Score=48.36 Aligned_cols=78 Identities=17% Similarity=0.137 Sum_probs=50.9
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHH---HHHHhhccC
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAP---LLTKLFDVV 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~---~l~~~~~~~ 192 (469)
..+++|+|+|++|.+|..+++.+...|.+|+++++... ..+.. ...++..+ .|..+.+ .+.+...+.
T Consensus 143 ~~g~~vlI~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~----~~~~~-----~~~g~~~~-~~~~~~~~~~~~~~~~~~~ 212 (325)
T cd08253 143 KAGETVLVHGGSGAVGHAAVQLARWAGARVIATASSAE----GAELV-----RQAGADAV-FNYRAEDLADRILAATAGQ 212 (325)
T ss_pred CCCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEeCCHH----HHHHH-----HHcCCCEE-EeCCCcCHHHHHHHHcCCC
Confidence 45789999999999999999999999999999987432 11111 11122211 2333333 333444444
Q ss_pred CccEEEEcccc
Q 012176 193 PFTHVLHLAAQ 203 (469)
Q Consensus 193 ~~d~Vih~Aa~ 203 (469)
++|+|+++++.
T Consensus 213 ~~d~vi~~~~~ 223 (325)
T cd08253 213 GVDVIIEVLAN 223 (325)
T ss_pred ceEEEEECCch
Confidence 67999999864
|
Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts |
| >PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated | Back alignment and domain information |
|---|
Probab=95.46 E-value=0.068 Score=54.71 Aligned_cols=74 Identities=15% Similarity=0.228 Sum_probs=55.3
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCcc
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFT 195 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~d 195 (469)
..+|+|+|+|+ |.+|..+++++.+.|++|++++........ . . . . ..+..|..|.+.+.++++..++|
T Consensus 10 ~~~~~ilIiG~-g~~~~~~~~a~~~~G~~v~~~~~~~~~~~~--~-----~-a--d-~~~~~~~~d~~~l~~~~~~~~id 77 (395)
T PRK09288 10 PSATRVMLLGS-GELGKEVAIEAQRLGVEVIAVDRYANAPAM--Q-----V-A--H-RSHVIDMLDGDALRAVIEREKPD 77 (395)
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCCCCchH--H-----h-h--h-heEECCCCCHHHHHHHHHHhCCC
Confidence 45679999996 799999999999999999999875432110 0 0 0 0 24667888999999888866779
Q ss_pred EEEEcc
Q 012176 196 HVLHLA 201 (469)
Q Consensus 196 ~Vih~A 201 (469)
.|+-..
T Consensus 78 ~vi~~~ 83 (395)
T PRK09288 78 YIVPEI 83 (395)
T ss_pred EEEEee
Confidence 998654
|
|
| >TIGR00518 alaDH alanine dehydrogenase | Back alignment and domain information |
|---|
Probab=95.45 E-value=0.058 Score=54.81 Aligned_cols=75 Identities=15% Similarity=0.112 Sum_probs=53.0
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCccE
Q 012176 117 NGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTH 196 (469)
Q Consensus 117 ~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~d~ 196 (469)
...+|+|+|+ |-+|...++.|.+.|.+|++++|..+ ..... .... +. .+..+..+.+.+.+.+.++ |+
T Consensus 166 ~~~~VlViGa-G~vG~~aa~~a~~lGa~V~v~d~~~~----~~~~l-~~~~---g~-~v~~~~~~~~~l~~~l~~a--Dv 233 (370)
T TIGR00518 166 EPGDVTIIGG-GVVGTNAAKMANGLGATVTILDINID----RLRQL-DAEF---GG-RIHTRYSNAYEIEDAVKRA--DL 233 (370)
T ss_pred CCceEEEEcC-CHHHHHHHHHHHHCCCeEEEEECCHH----HHHHH-HHhc---Cc-eeEeccCCHHHHHHHHccC--CE
Confidence 4567999987 99999999999999999999998432 11111 1111 11 2334566778888888877 99
Q ss_pred EEEcccc
Q 012176 197 VLHLAAQ 203 (469)
Q Consensus 197 Vih~Aa~ 203 (469)
||++++.
T Consensus 234 VI~a~~~ 240 (370)
T TIGR00518 234 LIGAVLI 240 (370)
T ss_pred EEEcccc
Confidence 9998754
|
The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP. |
| >cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase | Back alignment and domain information |
|---|
Probab=95.40 E-value=0.07 Score=49.29 Aligned_cols=36 Identities=31% Similarity=0.304 Sum_probs=32.7
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCC
Q 012176 115 RPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNF 151 (469)
Q Consensus 115 ~~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~ 151 (469)
..++|+|+|+|. |.+|+++++.|.+.|++|++.+++
T Consensus 25 ~l~gk~v~I~G~-G~vG~~~A~~L~~~G~~Vvv~D~~ 60 (200)
T cd01075 25 SLEGKTVAVQGL-GKVGYKLAEHLLEEGAKLIVADIN 60 (200)
T ss_pred CCCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEcCC
Confidence 367899999997 799999999999999999998874
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc |
| >PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=95.40 E-value=0.064 Score=52.45 Aligned_cols=34 Identities=29% Similarity=0.309 Sum_probs=31.0
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCC
Q 012176 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNS 153 (469)
Q Consensus 119 ~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~ 153 (469)
++|.|.|+ |.+|..++..|++.|++|++.+++.+
T Consensus 4 ~kIaViGa-G~mG~~iA~~la~~G~~V~l~d~~~~ 37 (287)
T PRK08293 4 KNVTVAGA-GVLGSQIAFQTAFHGFDVTIYDISDE 37 (287)
T ss_pred cEEEEECC-CHHHHHHHHHHHhcCCeEEEEeCCHH
Confidence 57999996 99999999999999999999998654
|
|
| >cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=95.35 E-value=0.21 Score=49.27 Aligned_cols=78 Identities=22% Similarity=0.142 Sum_probs=51.0
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHH---hhccC
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTK---LFDVV 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~---~~~~~ 192 (469)
..+.+|+|+|+++.+|..+++.+...|.+|+++++... ... .+...+... ..|..+.+..+. ...+.
T Consensus 165 ~~~~~vlI~g~~~~iG~~~~~~~~~~g~~v~~~~~~~~----~~~-----~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 234 (342)
T cd08266 165 RPGETVLVHGAGSGVGSAAIQIAKLFGATVIATAGSED----KLE-----RAKELGADY-VIDYRKEDFVREVRELTGKR 234 (342)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHH----HHH-----HHHHcCCCe-EEecCChHHHHHHHHHhCCC
Confidence 45679999999999999999999999999999887432 111 111112211 234554444333 33334
Q ss_pred CccEEEEcccc
Q 012176 193 PFTHVLHLAAQ 203 (469)
Q Consensus 193 ~~d~Vih~Aa~ 203 (469)
++|+++++++.
T Consensus 235 ~~d~~i~~~g~ 245 (342)
T cd08266 235 GVDVVVEHVGA 245 (342)
T ss_pred CCcEEEECCcH
Confidence 57999999874
|
This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone |
| >PRK08306 dipicolinate synthase subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=95.35 E-value=0.07 Score=52.47 Aligned_cols=69 Identities=20% Similarity=0.175 Sum_probs=49.4
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCcc
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFT 195 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~d 195 (469)
..+++|+|+|. |.+|..++..|.+.|.+|++++|... .... ....+...+ +.+.+.+.+.++ |
T Consensus 150 l~g~kvlViG~-G~iG~~~a~~L~~~Ga~V~v~~r~~~------~~~~---~~~~G~~~~-----~~~~l~~~l~~a--D 212 (296)
T PRK08306 150 IHGSNVLVLGF-GRTGMTLARTLKALGANVTVGARKSA------HLAR---ITEMGLSPF-----HLSELAEEVGKI--D 212 (296)
T ss_pred CCCCEEEEECC-cHHHHHHHHHHHHCCCEEEEEECCHH------HHHH---HHHcCCeee-----cHHHHHHHhCCC--C
Confidence 46789999996 88999999999999999999998432 1111 111233332 234566777777 9
Q ss_pred EEEEcc
Q 012176 196 HVLHLA 201 (469)
Q Consensus 196 ~Vih~A 201 (469)
+||++.
T Consensus 213 iVI~t~ 218 (296)
T PRK08306 213 IIFNTI 218 (296)
T ss_pred EEEECC
Confidence 999976
|
|
| >cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity | Back alignment and domain information |
|---|
Probab=95.32 E-value=0.22 Score=49.16 Aligned_cols=77 Identities=23% Similarity=0.214 Sum_probs=49.2
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHH---HHHHhhccC
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAP---LLTKLFDVV 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~---~l~~~~~~~ 192 (469)
..+.+|||+||+|.+|..+++.+...|.+|+++++..+ +...+...++..+ .|..+.+ .+.++.. .
T Consensus 142 ~~g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~~s~~---------~~~~l~~~Ga~~v-i~~~~~~~~~~v~~~~~-~ 210 (329)
T cd08294 142 KAGETVVVNGAAGAVGSLVGQIAKIKGCKVIGCAGSDD---------KVAWLKELGFDAV-FNYKTVSLEEALKEAAP-D 210 (329)
T ss_pred CCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHH---------HHHHHHHcCCCEE-EeCCCccHHHHHHHHCC-C
Confidence 45789999999999999999999999999998886332 1122222233222 2333222 2333322 3
Q ss_pred CccEEEEcccc
Q 012176 193 PFTHVLHLAAQ 203 (469)
Q Consensus 193 ~~d~Vih~Aa~ 203 (469)
++|+|+++.|.
T Consensus 211 gvd~vld~~g~ 221 (329)
T cd08294 211 GIDCYFDNVGG 221 (329)
T ss_pred CcEEEEECCCH
Confidence 57999998864
|
Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac |
| >PRK06718 precorrin-2 dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=95.31 E-value=0.079 Score=48.99 Aligned_cols=72 Identities=15% Similarity=0.174 Sum_probs=47.4
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCcc
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFT 195 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~d 195 (469)
.++++|+|+|| |-+|...++.|++.|++|+++++.. .+.+ ........+.+...++.. ..++++ |
T Consensus 8 l~~k~vLVIGg-G~va~~ka~~Ll~~ga~V~VIs~~~---~~~l----~~l~~~~~i~~~~~~~~~-----~~l~~a--d 72 (202)
T PRK06718 8 LSNKRVVIVGG-GKVAGRRAITLLKYGAHIVVISPEL---TENL----VKLVEEGKIRWKQKEFEP-----SDIVDA--F 72 (202)
T ss_pred cCCCEEEEECC-CHHHHHHHHHHHHCCCeEEEEcCCC---CHHH----HHHHhCCCEEEEecCCCh-----hhcCCc--e
Confidence 57889999997 9999999999999999999997622 1111 122222345555433322 234555 8
Q ss_pred EEEEccc
Q 012176 196 HVLHLAA 202 (469)
Q Consensus 196 ~Vih~Aa 202 (469)
+||-+-+
T Consensus 73 lViaaT~ 79 (202)
T PRK06718 73 LVIAATN 79 (202)
T ss_pred EEEEcCC
Confidence 8886543
|
|
| >PRK07877 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.27 E-value=0.15 Score=55.94 Aligned_cols=106 Identities=17% Similarity=0.089 Sum_probs=68.5
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCC--cEEEEeCCCCCC---------ChhHHHHH----HH----hhccCCeEEEE
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGD--GVLGLDNFNSYY---------DPSLKRAR----QK----LLQKHQVFIVE 176 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~--~V~~~~r~~~~~---------~~~~~~~~----~~----~~~~~~v~~v~ 176 (469)
..+.+|+|.|+ | +|++++..|.+.|- +++++|...-.. ...+.+.+ ++ ....-.|+.+.
T Consensus 105 L~~~~V~IvG~-G-lGs~~a~~LaraGvvG~l~lvD~D~ve~sNLnRq~~~~~diG~~Kv~~a~~~l~~inp~i~v~~~~ 182 (722)
T PRK07877 105 LGRLRIGVVGL-S-VGHAIAHTLAAEGLCGELRLADFDTLELSNLNRVPAGVFDLGVNKAVVAARRIAELDPYLPVEVFT 182 (722)
T ss_pred HhcCCEEEEEe-c-HHHHHHHHHHHccCCCeEEEEcCCEEcccccccccCChhhcccHHHHHHHHHHHHHCCCCEEEEEe
Confidence 45679999999 7 99999999999984 677776432110 01111111 11 11123566777
Q ss_pred ecCCCHHHHHHhhccCCccEEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcC
Q 012176 177 GDLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASS 245 (469)
Q Consensus 177 ~Dl~d~~~l~~~~~~~~~d~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS 245 (469)
..++ ++.++++++++ |+||+|.-. +..=..+-++|.+.++. +|+.++
T Consensus 183 ~~i~-~~n~~~~l~~~--DlVvD~~D~-----------------~~~R~~ln~~a~~~~iP--~i~~~~ 229 (722)
T PRK07877 183 DGLT-EDNVDAFLDGL--DVVVEECDS-----------------LDVKVLLREAARARRIP--VLMATS 229 (722)
T ss_pred ccCC-HHHHHHHhcCC--CEEEECCCC-----------------HHHHHHHHHHHHHcCCC--EEEEcC
Confidence 6666 67899999988 999999732 22223445678888874 777665
|
|
| >TIGR00507 aroE shikimate 5-dehydrogenase | Back alignment and domain information |
|---|
Probab=95.26 E-value=0.071 Score=51.67 Aligned_cols=36 Identities=25% Similarity=0.216 Sum_probs=32.2
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCC
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFN 152 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~ 152 (469)
..+++++|+|+ |.+|+.++..|.+.|++|++++|..
T Consensus 115 ~~~k~vliiGa-Gg~g~aia~~L~~~g~~v~v~~R~~ 150 (270)
T TIGR00507 115 RPNQRVLIIGA-GGAARAVALPLLKADCNVIIANRTV 150 (270)
T ss_pred ccCCEEEEEcC-cHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 45689999998 8999999999999999999999854
|
This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain. |
| >KOG2018 consensus Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.17 E-value=0.31 Score=47.12 Aligned_cols=116 Identities=23% Similarity=0.148 Sum_probs=67.0
Q ss_pred CCCCCCCEEEEEcCCChhHHHHHHHHHHCCC-cEEEEeCCCCCCChhHHHHHHHhhc---c-----------CCeEEEEe
Q 012176 113 PRRPNGMTVLVTGAAGFVGSHCSLALKKRGD-GVLGLDNFNSYYDPSLKRARQKLLQ---K-----------HQVFIVEG 177 (469)
Q Consensus 113 ~~~~~~~~VlVtGatG~IG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~---~-----------~~v~~v~~ 177 (469)
++...+.=|+|+|+ |.+|+|++..|++.|. ++.+++-..-..+. +.+..-..+. . .-.-+.+.
T Consensus 69 m~kl~~syVVVVG~-GgVGSwv~nmL~RSG~qKi~iVDfdqVSlsS-LNrHs~Atl~DVG~PK~~clkkh~skiaPw~eI 146 (430)
T KOG2018|consen 69 MEKLTNSYVVVVGA-GGVGSWVANMLLRSGVQKIRIVDFDQVSLSS-LNRHSCATLADVGTPKVMCLKKHFSKIAPWCEI 146 (430)
T ss_pred HHHhcCcEEEEEec-CchhHHHHHHHHHhcCceEEEechhhccHhh-hhhhhhhhHhhcCCchHHHHHHHHHhhCcccee
Confidence 33455666888886 9999999999999996 56666543322111 1111111000 0 01112222
Q ss_pred cC----CCHHHHHHhhccCCccEEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcCccccCCC
Q 012176 178 DL----NDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLN 252 (469)
Q Consensus 178 Dl----~d~~~l~~~~~~~~~d~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS~~vyg~~ 252 (469)
|. .+.++-++++.+ .||.|++|.- |++.-..|++.|..+|.+ .+||+++-...
T Consensus 147 dar~~l~~~~s~edll~g-nPdFvvDciD-----------------NidtKVdLL~y~~~~~l~----Viss~Gaaaks 203 (430)
T KOG2018|consen 147 DARNMLWTSSSEEDLLSG-NPDFVVDCID-----------------NIDTKVDLLEYCYNHGLK----VISSTGAAAKS 203 (430)
T ss_pred cHHHhhcCCCchhhhhcC-CCCeEeEhhh-----------------hhhhhhHHHHHHHHcCCc----eEeccCccccC
Confidence 22 233334455554 4899999862 677778899999999875 34555554433
|
|
| >TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain | Back alignment and domain information |
|---|
Probab=95.14 E-value=0.93 Score=47.33 Aligned_cols=88 Identities=19% Similarity=0.168 Sum_probs=57.6
Q ss_pred CCCCEEEEEcCC---ChhHHHHHHHHHHCCC--cEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhc
Q 012176 116 PNGMTVLVTGAA---GFVGSHCSLALKKRGD--GVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFD 190 (469)
Q Consensus 116 ~~~~~VlVtGat---G~IG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~ 190 (469)
.+.++|.|.|++ |-+|..+.+.|.+.|+ +|+.+...... -.++.. ..+++++-+
T Consensus 5 ~~p~siavvGaS~~~~~~g~~~~~~l~~~gf~g~v~~Vnp~~~~--------------i~G~~~-------~~sl~~lp~ 63 (447)
T TIGR02717 5 FNPKSVAVIGASRDPGKVGYAIMKNLIEGGYKGKIYPVNPKAGE--------------ILGVKA-------YPSVLEIPD 63 (447)
T ss_pred cCCCEEEEEccCCCCCchHHHHHHHHHhCCCCCcEEEECCCCCc--------------cCCccc-------cCCHHHCCC
Confidence 456789999998 6789999999999998 67776542110 001111 223344433
Q ss_pred cCCccEEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcC
Q 012176 191 VVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASS 245 (469)
Q Consensus 191 ~~~~d~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS 245 (469)
.+|.+|-+.. -..+..+++.|.+.|++ .+|.+|+
T Consensus 64 --~~Dlavi~vp------------------~~~~~~~l~e~~~~gv~-~~vi~s~ 97 (447)
T TIGR02717 64 --PVDLAVIVVP------------------AKYVPQVVEECGEKGVK-GAVVITA 97 (447)
T ss_pred --CCCEEEEecC------------------HHHHHHHHHHHHhcCCC-EEEEECC
Confidence 3488775542 22456788888889987 7877776
|
Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff. |
| >PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.14 E-value=0.15 Score=53.73 Aligned_cols=75 Identities=23% Similarity=0.182 Sum_probs=52.0
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCcc
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFT 195 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~d 195 (469)
..+++|+|+|+ |.+|..+++.|.++|++|+++++.+.. ........+...++.+..++-.. ... .+|
T Consensus 14 ~~~~~v~viG~-G~~G~~~A~~L~~~G~~V~~~d~~~~~----~~~~~~~~l~~~gv~~~~~~~~~------~~~--~~D 80 (480)
T PRK01438 14 WQGLRVVVAGL-GVSGFAAADALLELGARVTVVDDGDDE----RHRALAAILEALGATVRLGPGPT------LPE--DTD 80 (480)
T ss_pred cCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCchh----hhHHHHHHHHHcCCEEEECCCcc------ccC--CCC
Confidence 45678999997 999999999999999999999865421 11122233444578877765322 222 349
Q ss_pred EEEEcccc
Q 012176 196 HVLHLAAQ 203 (469)
Q Consensus 196 ~Vih~Aa~ 203 (469)
.||...|.
T Consensus 81 ~Vv~s~Gi 88 (480)
T PRK01438 81 LVVTSPGW 88 (480)
T ss_pred EEEECCCc
Confidence 99988876
|
|
| >cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E | Back alignment and domain information |
|---|
Probab=95.13 E-value=0.49 Score=44.67 Aligned_cols=110 Identities=19% Similarity=0.112 Sum_probs=64.9
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCC-cEEEEeCCCCCC----------Ch----hHHHHHHHh----hccCCeEEEE
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGD-GVLGLDNFNSYY----------DP----SLKRARQKL----LQKHQVFIVE 176 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~-~V~~~~r~~~~~----------~~----~~~~~~~~~----~~~~~v~~v~ 176 (469)
..+.+|+|.|. |.+|+++++.|.+.|. +++++|...-.. .. .+....... ...-.++.+.
T Consensus 9 L~~~~VlVvG~-GGvGs~va~~Lar~GVg~i~LvD~D~V~~sNlnRq~~~~~~diG~~Kae~~~~~l~~inP~~~V~~~~ 87 (231)
T cd00755 9 LRNAHVAVVGL-GGVGSWAAEALARSGVGKLTLIDFDVVCVSNLNRQIHALLSTVGKPKVEVMAERIRDINPECEVDAVE 87 (231)
T ss_pred HhCCCEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCEECchhhcchhCcChhhCCCcHHHHHHHHHHHHCCCcEEEEee
Confidence 45578999996 9999999999999986 677766432100 00 011111111 1122455555
Q ss_pred ecCCCHHHHHHhhccCCccEEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcCcc
Q 012176 177 GDLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSS 247 (469)
Q Consensus 177 ~Dl~d~~~l~~~~~~~~~d~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS~~ 247 (469)
..++ ++.+..++.. ++|+||.+... +..-..|.++|++.+.+ +|...+++
T Consensus 88 ~~i~-~~~~~~l~~~-~~D~VvdaiD~-----------------~~~k~~L~~~c~~~~ip--~I~s~g~g 137 (231)
T cd00755 88 EFLT-PDNSEDLLGG-DPDFVVDAIDS-----------------IRAKVALIAYCRKRKIP--VISSMGAG 137 (231)
T ss_pred eecC-HhHHHHHhcC-CCCEEEEcCCC-----------------HHHHHHHHHHHHHhCCC--EEEEeCCc
Confidence 4444 3455666642 46999998642 23345677889988864 66554433
|
coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. |
| >cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like | Back alignment and domain information |
|---|
Probab=95.10 E-value=0.22 Score=49.56 Aligned_cols=77 Identities=22% Similarity=0.210 Sum_probs=49.5
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCc-EEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCC--HHHHHHhhccC
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDG-VLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLND--APLLTKLFDVV 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d--~~~l~~~~~~~ 192 (469)
..+.+|+|+|+ |.+|..+++.+...|.+ |+++++..+ +.......++..+ .|..+ .+.+.++..+.
T Consensus 162 ~~g~~vlV~G~-G~vG~~~~~~ak~~G~~~vi~~~~~~~---------~~~~~~~~ga~~~-i~~~~~~~~~~~~~~~~~ 230 (339)
T cd08239 162 SGRDTVLVVGA-GPVGLGALMLARALGAEDVIGVDPSPE---------RLELAKALGADFV-INSGQDDVQEIRELTSGA 230 (339)
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHH---------HHHHHHHhCCCEE-EcCCcchHHHHHHHhCCC
Confidence 34789999986 99999999999999998 988876332 1111111133222 23222 33444555554
Q ss_pred CccEEEEcccc
Q 012176 193 PFTHVLHLAAQ 203 (469)
Q Consensus 193 ~~d~Vih~Aa~ 203 (469)
++|+||++.|.
T Consensus 231 ~~d~vid~~g~ 241 (339)
T cd08239 231 GADVAIECSGN 241 (339)
T ss_pred CCCEEEECCCC
Confidence 67999999875
|
MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at |
| >TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=95.09 E-value=0.23 Score=48.26 Aligned_cols=76 Identities=22% Similarity=0.243 Sum_probs=46.2
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCc-EEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCC-HHHHHHhhccCCc
Q 012176 117 NGMTVLVTGAAGFVGSHCSLALKKRGDG-VLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLND-APLLTKLFDVVPF 194 (469)
Q Consensus 117 ~~~~VlVtGatG~IG~~l~~~L~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d-~~~l~~~~~~~~~ 194 (469)
.+.+|+|.|+ |.||...++.+...|.+ |+++++... +.......++..+. |..+ .+.+.++..+.++
T Consensus 120 ~g~~VlV~G~-G~vG~~~~~~ak~~G~~~Vi~~~~~~~---------r~~~a~~~Ga~~~i-~~~~~~~~~~~~~~~~g~ 188 (280)
T TIGR03366 120 KGRRVLVVGA-GMLGLTAAAAAAAAGAARVVAADPSPD---------RRELALSFGATALA-EPEVLAERQGGLQNGRGV 188 (280)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHH---------HHHHHHHcCCcEec-CchhhHHHHHHHhCCCCC
Confidence 5779999986 89999999998889987 777765321 11111111332211 2222 2233444444457
Q ss_pred cEEEEcccc
Q 012176 195 THVLHLAAQ 203 (469)
Q Consensus 195 d~Vih~Aa~ 203 (469)
|+||++.|.
T Consensus 189 d~vid~~G~ 197 (280)
T TIGR03366 189 DVALEFSGA 197 (280)
T ss_pred CEEEECCCC
Confidence 999999874
|
This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds. |
| >cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2 | Back alignment and domain information |
|---|
Probab=94.98 E-value=0.27 Score=48.41 Aligned_cols=78 Identities=15% Similarity=0.157 Sum_probs=51.2
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCH---HHHHHhhccC
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDA---PLLTKLFDVV 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~---~~l~~~~~~~ 192 (469)
..+.+|+|.|++|.+|..+++.+...|.+|+++++..+ ... .... .++..+. +..+. +.+.++..+.
T Consensus 138 ~~g~~vlI~g~~g~ig~~~~~~a~~~G~~v~~~~~~~~----~~~-~~~~----~g~~~~~-~~~~~~~~~~i~~~~~~~ 207 (324)
T cd08292 138 KPGQWLIQNAAGGAVGKLVAMLAAARGINVINLVRRDA----GVA-ELRA----LGIGPVV-STEQPGWQDKVREAAGGA 207 (324)
T ss_pred CCCCEEEEcccccHHHHHHHHHHHHCCCeEEEEecCHH----HHH-HHHh----cCCCEEE-cCCCchHHHHHHHHhCCC
Confidence 45789999999999999999999999999998876332 111 1111 1332221 22222 3345555555
Q ss_pred CccEEEEcccc
Q 012176 193 PFTHVLHLAAQ 203 (469)
Q Consensus 193 ~~d~Vih~Aa~ 203 (469)
++|+|+++.|.
T Consensus 208 ~~d~v~d~~g~ 218 (324)
T cd08292 208 PISVALDSVGG 218 (324)
T ss_pred CCcEEEECCCC
Confidence 67999999874
|
2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina |
| >PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.97 E-value=0.08 Score=51.41 Aligned_cols=57 Identities=16% Similarity=0.197 Sum_probs=48.4
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCcc
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFT 195 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~d 195 (469)
.++++|+|+|+++.+|+-++..|.++|..|+++.+.. ..+.+.++.+ |
T Consensus 156 l~Gk~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~t------------------------------~~l~~~~~~A--D 203 (286)
T PRK14175 156 LEGKNAVVIGRSHIVGQPVSKLLLQKNASVTILHSRS------------------------------KDMASYLKDA--D 203 (286)
T ss_pred CCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCc------------------------------hhHHHHHhhC--C
Confidence 7899999999999999999999999999999998621 2366677777 9
Q ss_pred EEEEccccc
Q 012176 196 HVLHLAAQA 204 (469)
Q Consensus 196 ~Vih~Aa~~ 204 (469)
+||...|..
T Consensus 204 IVIsAvg~p 212 (286)
T PRK14175 204 VIVSAVGKP 212 (286)
T ss_pred EEEECCCCC
Confidence 999998863
|
|
| >TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit | Back alignment and domain information |
|---|
Probab=94.97 E-value=1.7 Score=42.41 Aligned_cols=92 Identities=13% Similarity=0.068 Sum_probs=57.9
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCccE
Q 012176 117 NGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTH 196 (469)
Q Consensus 117 ~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~d~ 196 (469)
+.-+|+|-|.||.+|+.+.+.|+..|.+++.-.......+ .+. .+.-..+++++-+...+|.
T Consensus 5 ~~~~~~~~g~~~~~~~~~~~~~~~~g~~~v~~V~p~~~~~--------------~v~----G~~~y~sv~dlp~~~~~Dl 66 (286)
T TIGR01019 5 KDTKVIVQGITGSQGSFHTEQMLAYGTNIVGGVTPGKGGT--------------TVL----GLPVFDSVKEAVEETGANA 66 (286)
T ss_pred CCCcEEEecCCcHHHHHHHHHHHhCCCCEEEEECCCCCcc--------------eec----CeeccCCHHHHhhccCCCE
Confidence 3458999999999999999999999888555443221010 111 1111234555554423588
Q ss_pred EEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcC
Q 012176 197 VLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASS 245 (469)
Q Consensus 197 Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS 245 (469)
+|-+... ..+..+++.|.+.|++ .+|.+|+
T Consensus 67 avi~vpa------------------~~v~~~l~e~~~~Gvk-~avIis~ 96 (286)
T TIGR01019 67 SVIFVPA------------------PFAADAIFEAIDAGIE-LIVCITE 96 (286)
T ss_pred EEEecCH------------------HHHHHHHHHHHHCCCC-EEEEECC
Confidence 7776542 1346677778888987 6666665
|
ATP citrate lyases appear to form an outgroup. |
| >PRK10537 voltage-gated potassium channel; Provisional | Back alignment and domain information |
|---|
Probab=94.95 E-value=0.27 Score=50.30 Aligned_cols=70 Identities=19% Similarity=0.239 Sum_probs=52.5
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhh-ccCCccE
Q 012176 118 GMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLF-DVVPFTH 196 (469)
Q Consensus 118 ~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~-~~~~~d~ 196 (469)
+.+|+|+|. |-+|+.++++|.++|++|++++.+. . +.....+..++.||.+|++.++++= +.+ +.
T Consensus 240 k~HvII~G~-g~lg~~v~~~L~~~g~~vvVId~d~---------~--~~~~~~g~~vI~GD~td~e~L~~AgI~~A--~a 305 (393)
T PRK10537 240 KDHFIICGH-SPLAINTYLGLRQRGQAVTVIVPLG---------L--EHRLPDDADLIPGDSSDSAVLKKAGAARA--RA 305 (393)
T ss_pred CCeEEEECC-ChHHHHHHHHHHHCCCCEEEEECch---------h--hhhccCCCcEEEeCCCCHHHHHhcCcccC--CE
Confidence 467999996 8999999999999999999988521 1 1112236789999999999887653 444 78
Q ss_pred EEEcc
Q 012176 197 VLHLA 201 (469)
Q Consensus 197 Vih~A 201 (469)
||-+.
T Consensus 306 VI~~t 310 (393)
T PRK10537 306 ILALR 310 (393)
T ss_pred EEEcC
Confidence 87554
|
|
| >cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=94.92 E-value=0.34 Score=46.00 Aligned_cols=35 Identities=40% Similarity=0.431 Sum_probs=31.4
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCC
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNF 151 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~ 151 (469)
..+.+|+|+|+++ +|..+++.+...|.+|+++++.
T Consensus 133 ~~~~~vli~g~~~-~G~~~~~~a~~~g~~v~~~~~~ 167 (271)
T cd05188 133 KPGDTVLVLGAGG-VGLLAAQLAKAAGARVIVTDRS 167 (271)
T ss_pred CCCCEEEEECCCH-HHHHHHHHHHHcCCeEEEEcCC
Confidence 4577999999998 9999999999999999999874
|
The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro |
| >cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases | Back alignment and domain information |
|---|
Probab=94.86 E-value=0.23 Score=48.97 Aligned_cols=76 Identities=24% Similarity=0.178 Sum_probs=48.4
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCC--HHHHHHhhccCCc
Q 012176 117 NGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLND--APLLTKLFDVVPF 194 (469)
Q Consensus 117 ~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d--~~~l~~~~~~~~~ 194 (469)
.+.+|+|.|++|.+|..+++.+...|.+|+++++..+ +.......++..+ .|..+ .+.+.++ .+.++
T Consensus 146 ~~~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~~~---------~~~~~~~~g~~~v-~~~~~~~~~~~~~~-~~~~~ 214 (326)
T cd08289 146 EQGPVLVTGATGGVGSLAVSILAKLGYEVVASTGKAD---------AADYLKKLGAKEV-IPREELQEESIKPL-EKQRW 214 (326)
T ss_pred CCCEEEEEcCCchHHHHHHHHHHHCCCeEEEEecCHH---------HHHHHHHcCCCEE-EcchhHHHHHHHhh-ccCCc
Confidence 4579999999999999999999999999999887432 1111111233222 12222 2333333 23357
Q ss_pred cEEEEcccc
Q 012176 195 THVLHLAAQ 203 (469)
Q Consensus 195 d~Vih~Aa~ 203 (469)
|+|+++.|.
T Consensus 215 d~vld~~g~ 223 (326)
T cd08289 215 AGAVDPVGG 223 (326)
T ss_pred CEEEECCcH
Confidence 999998763
|
yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH |
| >PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A | Back alignment and domain information |
|---|
Probab=94.86 E-value=0.27 Score=41.06 Aligned_cols=85 Identities=14% Similarity=0.167 Sum_probs=49.4
Q ss_pred CEEEEEcCC---ChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCcc
Q 012176 119 MTVLVTGAA---GFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFT 195 (469)
Q Consensus 119 ~~VlVtGat---G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~d 195 (469)
|+|.|.|++ +-.|..+.+.|.+.|++|+.+.-.... -.+...+ .++++. ...+|
T Consensus 1 ksiAVvGaS~~~~~~g~~v~~~l~~~G~~v~~Vnp~~~~--------------i~G~~~y-------~sl~e~--p~~iD 57 (116)
T PF13380_consen 1 KSIAVVGASDNPGKFGYRVLRNLKAAGYEVYPVNPKGGE--------------ILGIKCY-------PSLAEI--PEPID 57 (116)
T ss_dssp -EEEEET--SSTTSHHHHHHHHHHHTT-EEEEESTTCSE--------------ETTEE-B-------SSGGGC--SST-S
T ss_pred CEEEEEcccCCCCChHHHHHHHHHhCCCEEEEECCCceE--------------ECcEEee-------ccccCC--CCCCC
Confidence 579999998 778999999999999999988642110 0011111 122221 23558
Q ss_pred EEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcC
Q 012176 196 HVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASS 245 (469)
Q Consensus 196 ~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS 245 (469)
.++-+.. -.-+..+++.|.+.|++ .+++.++
T Consensus 58 lavv~~~------------------~~~~~~~v~~~~~~g~~-~v~~~~g 88 (116)
T PF13380_consen 58 LAVVCVP------------------PDKVPEIVDEAAALGVK-AVWLQPG 88 (116)
T ss_dssp EEEE-S-------------------HHHHHHHHHHHHHHT-S-EEEE-TT
T ss_pred EEEEEcC------------------HHHHHHHHHHHHHcCCC-EEEEEcc
Confidence 8877653 23456788888888886 7777664
|
|
| >PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=94.82 E-value=0.046 Score=53.48 Aligned_cols=38 Identities=24% Similarity=0.262 Sum_probs=33.1
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCCh
Q 012176 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDP 157 (469)
Q Consensus 119 ~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~ 157 (469)
++|.|.|+ |.+|..++..|+..|++|++.++..+..+.
T Consensus 6 ~~V~ViGa-G~mG~~iA~~~a~~G~~V~l~d~~~~~~~~ 43 (286)
T PRK07819 6 QRVGVVGA-GQMGAGIAEVCARAGVDVLVFETTEELATA 43 (286)
T ss_pred cEEEEEcc-cHHHHHHHHHHHhCCCEEEEEECCHHHHHH
Confidence 48999997 999999999999999999999997664433
|
|
| >PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed | Back alignment and domain information |
|---|
Probab=94.81 E-value=0.12 Score=52.61 Aligned_cols=68 Identities=21% Similarity=0.191 Sum_probs=51.8
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCccEE
Q 012176 118 GMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTHV 197 (469)
Q Consensus 118 ~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~d~V 197 (469)
+++|+|.|+ |.+|+.++.++.+.|++|++++...... .... --+.+.+|..|.+.+.++++.+ |+|
T Consensus 2 ~~~igilG~-Gql~~ml~~aa~~lG~~v~~~d~~~~~p-------a~~~----ad~~~~~~~~D~~~l~~~a~~~--dvi 67 (372)
T PRK06019 2 MKTIGIIGG-GQLGRMLALAAAPLGYKVIVLDPDPDSP-------AAQV----ADEVIVADYDDVAALRELAEQC--DVI 67 (372)
T ss_pred CCEEEEECC-CHHHHHHHHHHHHcCCEEEEEeCCCCCc-------hhHh----CceEEecCCCCHHHHHHHHhcC--CEE
Confidence 468999997 8999999999999999999998744311 1111 1135567899999999999877 887
Q ss_pred EE
Q 012176 198 LH 199 (469)
Q Consensus 198 ih 199 (469)
..
T Consensus 68 t~ 69 (372)
T PRK06019 68 TY 69 (372)
T ss_pred Ee
Confidence 53
|
|
| >cd08250 Mgc45594_like Mgc45594 gene product and other MDR family members | Back alignment and domain information |
|---|
Probab=94.79 E-value=0.39 Score=47.43 Aligned_cols=36 Identities=39% Similarity=0.358 Sum_probs=32.3
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCC
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNF 151 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~ 151 (469)
..+.+|+|.|++|.+|..+++.+...|.+|+++++.
T Consensus 138 ~~~~~vlI~ga~g~ig~~~~~~a~~~g~~v~~~~~~ 173 (329)
T cd08250 138 KSGETVLVTAAAGGTGQFAVQLAKLAGCHVIGTCSS 173 (329)
T ss_pred CCCCEEEEEeCccHHHHHHHHHHHHcCCeEEEEeCc
Confidence 457899999999999999999999999999998874
|
Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. |
| >cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy) | Back alignment and domain information |
|---|
Probab=94.76 E-value=0.21 Score=51.22 Aligned_cols=68 Identities=15% Similarity=0.181 Sum_probs=47.5
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCcc
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFT 195 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~d 195 (469)
..+++|+|.|+ |.||..+++.+...|.+|++++++... . ... ...++..+. +++++.++ |
T Consensus 200 l~GktVvViG~-G~IG~~va~~ak~~Ga~ViV~d~d~~R----~--~~A---~~~G~~~~~--------~~e~v~~a--D 259 (413)
T cd00401 200 IAGKVAVVAGY-GDVGKGCAQSLRGQGARVIVTEVDPIC----A--LQA---AMEGYEVMT--------MEEAVKEG--D 259 (413)
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEECChhh----H--HHH---HhcCCEEcc--------HHHHHcCC--C
Confidence 57899999996 999999999999999999999874321 1 111 112443321 13455666 9
Q ss_pred EEEEcccc
Q 012176 196 HVLHLAAQ 203 (469)
Q Consensus 196 ~Vih~Aa~ 203 (469)
+||.+.|.
T Consensus 260 VVI~atG~ 267 (413)
T cd00401 260 IFVTTTGN 267 (413)
T ss_pred EEEECCCC
Confidence 99998764
|
The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+. |
| >PLN03154 putative allyl alcohol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.70 E-value=0.37 Score=48.43 Aligned_cols=35 Identities=31% Similarity=0.377 Sum_probs=31.7
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeC
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDN 150 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r 150 (469)
..+.+|||+||+|.+|..+++.+...|.+|+++++
T Consensus 157 ~~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~ 191 (348)
T PLN03154 157 KKGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAG 191 (348)
T ss_pred CCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcC
Confidence 45789999999999999999999999999988876
|
|
| >TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=94.69 E-value=0.3 Score=49.22 Aligned_cols=77 Identities=14% Similarity=0.144 Sum_probs=48.5
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCc-EEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCH---HHHHHhhcc
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDG-VLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDA---PLLTKLFDV 191 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~---~~l~~~~~~ 191 (469)
..+.+|||.|+ |.+|...++.+...|.+ |+++++... +.......+...+ .|..+. +.+.++..+
T Consensus 175 ~~g~~VlV~G~-g~vG~~a~~~ak~~G~~~Vi~~~~~~~---------~~~~~~~~Ga~~~-i~~~~~~~~~~i~~~~~~ 243 (358)
T TIGR03451 175 KRGDSVAVIGC-GGVGDAAIAGAALAGASKIIAVDIDDR---------KLEWAREFGATHT-VNSSGTDPVEAIRALTGG 243 (358)
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCHH---------HHHHHHHcCCceE-EcCCCcCHHHHHHHHhCC
Confidence 45789999985 99999999999999985 888876332 1111112233211 133332 334444444
Q ss_pred CCccEEEEcccc
Q 012176 192 VPFTHVLHLAAQ 203 (469)
Q Consensus 192 ~~~d~Vih~Aa~ 203 (469)
.++|+||++.|.
T Consensus 244 ~g~d~vid~~g~ 255 (358)
T TIGR03451 244 FGADVVIDAVGR 255 (358)
T ss_pred CCCCEEEECCCC
Confidence 467999999874
|
Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione. |
| >TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms) | Back alignment and domain information |
|---|
Probab=94.69 E-value=0.15 Score=51.32 Aligned_cols=32 Identities=31% Similarity=0.323 Sum_probs=27.3
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCC-CcEEEEeC
Q 012176 119 MTVLVTGAAGFVGSHCSLALKKRG-DGVLGLDN 150 (469)
Q Consensus 119 ~~VlVtGatG~IG~~l~~~L~~~G-~~V~~~~r 150 (469)
++|.|+|++|++|++|++.|.++. .+|..+..
T Consensus 1 ~kVaIvGatG~~G~~L~~~l~~~~~~~l~~v~~ 33 (341)
T TIGR00978 1 MRVAVLGATGLVGQKFVKLLAKHPYFELAKVVA 33 (341)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCceEEEEEE
Confidence 579999999999999999998876 58877743
|
Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan. |
| >PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related | Back alignment and domain information |
|---|
Probab=94.68 E-value=0.11 Score=46.86 Aligned_cols=70 Identities=24% Similarity=0.215 Sum_probs=47.1
Q ss_pred CCCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCC
Q 012176 114 RRPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVP 193 (469)
Q Consensus 114 ~~~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~ 193 (469)
....+++|.|.|. |-||+.+++.|..-|.+|++.+|... ... .....++ ...+++++++.+
T Consensus 32 ~~l~g~tvgIiG~-G~IG~~vA~~l~~fG~~V~~~d~~~~-------~~~--~~~~~~~--------~~~~l~ell~~a- 92 (178)
T PF02826_consen 32 RELRGKTVGIIGY-GRIGRAVARRLKAFGMRVIGYDRSPK-------PEE--GADEFGV--------EYVSLDELLAQA- 92 (178)
T ss_dssp S-STTSEEEEEST-SHHHHHHHHHHHHTT-EEEEEESSCH-------HHH--HHHHTTE--------EESSHHHHHHH--
T ss_pred cccCCCEEEEEEE-cCCcCeEeeeeecCCceeEEecccCC-------hhh--hcccccc--------eeeehhhhcchh-
Confidence 4478999999995 99999999999999999999999542 111 0011121 123467788888
Q ss_pred ccEEEEcccc
Q 012176 194 FTHVLHLAAQ 203 (469)
Q Consensus 194 ~d~Vih~Aa~ 203 (469)
|+|+.+.-.
T Consensus 93 -Div~~~~pl 101 (178)
T PF02826_consen 93 -DIVSLHLPL 101 (178)
T ss_dssp -SEEEE-SSS
T ss_pred -hhhhhhhcc
Confidence 998887754
|
All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A .... |
| >cd08230 glucose_DH Glucose dehydrogenase | Back alignment and domain information |
|---|
Probab=94.67 E-value=0.36 Score=48.53 Aligned_cols=77 Identities=22% Similarity=0.302 Sum_probs=47.4
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCccE
Q 012176 117 NGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTH 196 (469)
Q Consensus 117 ~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~d~ 196 (469)
.+.+|+|+|+ |.+|...++.+...|.+|++++|... .+ .+......-++..+ |..+.+ +.+.....++|+
T Consensus 172 ~g~~vlI~G~-G~vG~~a~q~ak~~G~~vi~~~~~~~--~~----~~~~~~~~~Ga~~v--~~~~~~-~~~~~~~~~~d~ 241 (355)
T cd08230 172 NPRRALVLGA-GPIGLLAALLLRLRGFEVYVLNRRDP--PD----PKADIVEELGATYV--NSSKTP-VAEVKLVGEFDL 241 (355)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCeEEEEecCCC--CH----HHHHHHHHcCCEEe--cCCccc-hhhhhhcCCCCE
Confidence 5779999986 99999999998889999999987421 01 11122222344433 332221 111111235699
Q ss_pred EEEcccc
Q 012176 197 VLHLAAQ 203 (469)
Q Consensus 197 Vih~Aa~ 203 (469)
||++.|.
T Consensus 242 vid~~g~ 248 (355)
T cd08230 242 IIEATGV 248 (355)
T ss_pred EEECcCC
Confidence 9999974
|
Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai |
| >PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional | Back alignment and domain information |
|---|
Probab=94.66 E-value=0.24 Score=49.04 Aligned_cols=68 Identities=16% Similarity=0.214 Sum_probs=50.5
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCc
Q 012176 115 RPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPF 194 (469)
Q Consensus 115 ~~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~ 194 (469)
...+++|.|.| .|-||+.+++.|...|.+|++.+|..... .++..+ ...++++++++++
T Consensus 133 ~l~g~tvgIvG-~G~IG~~vA~~l~afG~~V~~~~~~~~~~--------------~~~~~~----~~~~~l~e~l~~a-- 191 (312)
T PRK15469 133 HREDFTIGILG-AGVLGSKVAQSLQTWGFPLRCWSRSRKSW--------------PGVQSF----AGREELSAFLSQT-- 191 (312)
T ss_pred CcCCCEEEEEC-CCHHHHHHHHHHHHCCCEEEEEeCCCCCC--------------CCceee----cccccHHHHHhcC--
Confidence 35789999999 59999999999999999999998743210 011111 1245688899988
Q ss_pred cEEEEcccc
Q 012176 195 THVLHLAAQ 203 (469)
Q Consensus 195 d~Vih~Aa~ 203 (469)
|+|+.+...
T Consensus 192 Dvvv~~lPl 200 (312)
T PRK15469 192 RVLINLLPN 200 (312)
T ss_pred CEEEECCCC
Confidence 999988754
|
|
| >PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated | Back alignment and domain information |
|---|
Probab=94.65 E-value=0.11 Score=55.02 Aligned_cols=34 Identities=21% Similarity=0.271 Sum_probs=30.7
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCC
Q 012176 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNS 153 (469)
Q Consensus 119 ~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~ 153 (469)
|+|.|+|+ |.+|..++..|++.|++|++.++..+
T Consensus 5 ~kIavIG~-G~MG~~iA~~la~~G~~V~v~D~~~~ 38 (495)
T PRK07531 5 MKAACIGG-GVIGGGWAARFLLAGIDVAVFDPHPE 38 (495)
T ss_pred CEEEEECc-CHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 57999985 99999999999999999999998654
|
|
| >PRK12549 shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=94.63 E-value=0.051 Score=53.08 Aligned_cols=36 Identities=25% Similarity=0.128 Sum_probs=31.8
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCC-cEEEEeCCC
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGD-GVLGLDNFN 152 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~-~V~~~~r~~ 152 (469)
..+++|+|.|+ |..|++++..|.+.|. +|++++|..
T Consensus 125 ~~~k~vlIlGa-GGaaraia~aL~~~G~~~I~I~nR~~ 161 (284)
T PRK12549 125 ASLERVVQLGA-GGAGAAVAHALLTLGVERLTIFDVDP 161 (284)
T ss_pred ccCCEEEEECC-cHHHHHHHHHHHHcCCCEEEEECCCH
Confidence 46689999997 8899999999999997 799999954
|
|
| >cd08293 PTGR2 Prostaglandin reductase | Back alignment and domain information |
|---|
Probab=94.62 E-value=0.39 Score=47.90 Aligned_cols=34 Identities=32% Similarity=0.361 Sum_probs=30.4
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHCCC-cEEEEeCC
Q 012176 118 GMTVLVTGAAGFVGSHCSLALKKRGD-GVLGLDNF 151 (469)
Q Consensus 118 ~~~VlVtGatG~IG~~l~~~L~~~G~-~V~~~~r~ 151 (469)
+.+|||+||+|.+|..+++.+...|. +|+++++.
T Consensus 155 ~~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s 189 (345)
T cd08293 155 NQTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGS 189 (345)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 37999999999999999999988998 79998763
|
Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid |
| >PRK10309 galactitol-1-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.61 E-value=0.39 Score=48.05 Aligned_cols=78 Identities=19% Similarity=0.259 Sum_probs=49.0
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCc-EEEEeCCCCCCChhHHHHHHHhhccCCeE-EEEecCCCHHHHHHhhccCC
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDG-VLGLDNFNSYYDPSLKRARQKLLQKHQVF-IVEGDLNDAPLLTKLFDVVP 193 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~v~-~v~~Dl~d~~~l~~~~~~~~ 193 (469)
..+.+|+|+|+ |.+|..+++.+...|.+ |+++++..+ +.......++. ++..+-.+.+.+.++..+.+
T Consensus 159 ~~g~~vlV~G~-g~vG~~~~~~a~~~G~~~v~~~~~~~~---------~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~~ 228 (347)
T PRK10309 159 CEGKNVIIIGA-GTIGLLAIQCAVALGAKSVTAIDINSE---------KLALAKSLGAMQTFNSREMSAPQIQSVLRELR 228 (347)
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEECCCHH---------HHHHHHHcCCceEecCcccCHHHHHHHhcCCC
Confidence 45789999975 99999999999999997 677766332 11111112322 22222222445666665556
Q ss_pred cc-EEEEcccc
Q 012176 194 FT-HVLHLAAQ 203 (469)
Q Consensus 194 ~d-~Vih~Aa~ 203 (469)
+| +||.+.|.
T Consensus 229 ~d~~v~d~~G~ 239 (347)
T PRK10309 229 FDQLILETAGV 239 (347)
T ss_pred CCeEEEECCCC
Confidence 78 89999875
|
|
| >PRK06719 precorrin-2 dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=94.59 E-value=0.093 Score=46.45 Aligned_cols=33 Identities=21% Similarity=0.251 Sum_probs=30.8
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEe
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLD 149 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~ 149 (469)
.++++|+|.|| |-+|...++.|++.|++|++++
T Consensus 11 l~~~~vlVvGG-G~va~rka~~Ll~~ga~V~VIs 43 (157)
T PRK06719 11 LHNKVVVIIGG-GKIAYRKASGLKDTGAFVTVVS 43 (157)
T ss_pred cCCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEc
Confidence 67899999997 9999999999999999999985
|
|
| >PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.59 E-value=0.29 Score=50.55 Aligned_cols=35 Identities=29% Similarity=0.414 Sum_probs=31.3
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCC
Q 012176 118 GMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNS 153 (469)
Q Consensus 118 ~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~ 153 (469)
.|+|.|.|. |++|..++..|++.|++|++++++.+
T Consensus 3 ~~kI~VIGl-G~~G~~~A~~La~~G~~V~~~D~~~~ 37 (415)
T PRK11064 3 FETISVIGL-GYIGLPTAAAFASRQKQVIGVDINQH 37 (415)
T ss_pred ccEEEEECc-chhhHHHHHHHHhCCCEEEEEeCCHH
Confidence 478999985 99999999999999999999998543
|
|
| >PRK09880 L-idonate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.55 E-value=0.37 Score=48.22 Aligned_cols=75 Identities=17% Similarity=0.173 Sum_probs=46.5
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCC-cEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccC-Cc
Q 012176 117 NGMTVLVTGAAGFVGSHCSLALKKRGD-GVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV-PF 194 (469)
Q Consensus 117 ~~~~VlVtGatG~IG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~-~~ 194 (469)
.+.+|+|+|+ |.+|...++.+...|. +|++++++++ +......-+...+ .|..+. ++.+..+.. ++
T Consensus 169 ~g~~VlV~G~-G~vG~~aiqlak~~G~~~Vi~~~~~~~---------~~~~a~~lGa~~v-i~~~~~-~~~~~~~~~g~~ 236 (343)
T PRK09880 169 QGKRVFVSGV-GPIGCLIVAAVKTLGAAEIVCADVSPR---------SLSLAREMGADKL-VNPQND-DLDHYKAEKGYF 236 (343)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCcEEEEEeCCHH---------HHHHHHHcCCcEE-ecCCcc-cHHHHhccCCCC
Confidence 5789999986 9999999999999998 5888887432 1111111233322 233332 233333322 37
Q ss_pred cEEEEcccc
Q 012176 195 THVLHLAAQ 203 (469)
Q Consensus 195 d~Vih~Aa~ 203 (469)
|+||++.|.
T Consensus 237 D~vid~~G~ 245 (343)
T PRK09880 237 DVSFEVSGH 245 (343)
T ss_pred CEEEECCCC
Confidence 999999874
|
|
| >PRK12749 quinate/shikimate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=94.52 E-value=0.23 Score=48.56 Aligned_cols=36 Identities=17% Similarity=0.138 Sum_probs=30.9
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCC-cEEEEeCCC
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGD-GVLGLDNFN 152 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~-~V~~~~r~~ 152 (469)
.++++|+|.|+ |..+++++..|...|. +|++++|..
T Consensus 122 ~~~k~vlvlGa-GGaarAi~~~l~~~g~~~i~i~nRt~ 158 (288)
T PRK12749 122 IKGKTMVLLGA-GGASTAIGAQGAIEGLKEIKLFNRRD 158 (288)
T ss_pred cCCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEeCCc
Confidence 46789999997 7779999999999985 899999964
|
|
| >KOG0172 consensus Lysine-ketoglutarate reductase/saccharopine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.49 E-value=0.11 Score=51.77 Aligned_cols=74 Identities=23% Similarity=0.278 Sum_probs=58.2
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHCCC-cEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHH-HHHHhhccCCcc
Q 012176 118 GMTVLVTGAAGFVGSHCSLALKKRGD-GVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAP-LLTKLFDVVPFT 195 (469)
Q Consensus 118 ~~~VlVtGatG~IG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~-~l~~~~~~~~~d 195 (469)
+++|||.| +||+.+-++..|.+++. +|++..| . .+..++......++.+..|+.|++ .+++.++.. |
T Consensus 2 ~~~vlllg-sg~v~~p~~d~ls~~~dv~vtva~~-------~-~~~~~~~~~~~~~~av~ldv~~~~~~L~~~v~~~--D 70 (445)
T KOG0172|consen 2 KKGVLLLG-SGFVSRPVADFLSRKKDVNVTVASR-------T-LKDAEALVKGINIKAVSLDVADEELALRKEVKPL--D 70 (445)
T ss_pred CcceEEec-CccccchHHHHHhhcCCceEEEehh-------h-HHHHHHHhcCCCccceEEEccchHHHHHhhhccc--c
Confidence 46899999 59999999999998864 7777776 2 223334445567999999999998 899999888 9
Q ss_pred EEEEccc
Q 012176 196 HVLHLAA 202 (469)
Q Consensus 196 ~Vih~Aa 202 (469)
.|+.+--
T Consensus 71 ~viSLlP 77 (445)
T KOG0172|consen 71 LVISLLP 77 (445)
T ss_pred eeeeecc
Confidence 9998763
|
|
| >PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.49 E-value=0.11 Score=50.67 Aligned_cols=57 Identities=16% Similarity=0.128 Sum_probs=47.6
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCc
Q 012176 115 RPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPF 194 (469)
Q Consensus 115 ~~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~ 194 (469)
...||+|.|.|.+|.+|+-++..|+++|+.|++..+... +++++.+.+
T Consensus 156 ~l~Gk~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~~t~------------------------------~l~e~~~~A-- 203 (301)
T PRK14194 156 DLTGKHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSRST------------------------------DAKALCRQA-- 203 (301)
T ss_pred CCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEECCCCC------------------------------CHHHHHhcC--
Confidence 378999999999999999999999999999999976221 355666677
Q ss_pred cEEEEcccc
Q 012176 195 THVLHLAAQ 203 (469)
Q Consensus 195 d~Vih~Aa~ 203 (469)
|+||-+.|.
T Consensus 204 DIVIsavg~ 212 (301)
T PRK14194 204 DIVVAAVGR 212 (301)
T ss_pred CEEEEecCC
Confidence 999988876
|
|
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.48 E-value=0.38 Score=47.78 Aligned_cols=74 Identities=22% Similarity=0.193 Sum_probs=51.0
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCcc
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFT 195 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~d 195 (469)
..+++|+|+|+ |.+|..-++.+...|.+|++++|+++ +......+ +...+.. ..|++..+++-+. +|
T Consensus 165 ~pG~~V~I~G~-GGlGh~avQ~Aka~ga~Via~~~~~~------K~e~a~~l---GAd~~i~-~~~~~~~~~~~~~--~d 231 (339)
T COG1064 165 KPGKWVAVVGA-GGLGHMAVQYAKAMGAEVIAITRSEE------KLELAKKL---GADHVIN-SSDSDALEAVKEI--AD 231 (339)
T ss_pred CCCCEEEEECC-cHHHHHHHHHHHHcCCeEEEEeCChH------HHHHHHHh---CCcEEEE-cCCchhhHHhHhh--Cc
Confidence 45789999998 59999999999999999999999654 11111111 3333322 2256656655554 59
Q ss_pred EEEEccc
Q 012176 196 HVLHLAA 202 (469)
Q Consensus 196 ~Vih~Aa 202 (469)
++|.+++
T Consensus 232 ~ii~tv~ 238 (339)
T COG1064 232 AIIDTVG 238 (339)
T ss_pred EEEECCC
Confidence 9999997
|
|
| >PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF) | Back alignment and domain information |
|---|
Probab=94.48 E-value=0.12 Score=45.72 Aligned_cols=57 Identities=19% Similarity=0.238 Sum_probs=42.7
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCcc
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFT 195 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~d 195 (469)
.++|+|+|.|.+..+|+-++..|.++|..|+++.... ..+++..+.+ |
T Consensus 34 l~Gk~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~T------------------------------~~l~~~~~~A--D 81 (160)
T PF02882_consen 34 LEGKKVVVVGRSNIVGKPLAMLLLNKGATVTICHSKT------------------------------KNLQEITRRA--D 81 (160)
T ss_dssp TTT-EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TTS------------------------------SSHHHHHTTS--S
T ss_pred CCCCEEEEECCcCCCChHHHHHHHhCCCeEEeccCCC------------------------------Ccccceeeec--c
Confidence 7899999999999999999999999999999987521 2355566667 8
Q ss_pred EEEEccccc
Q 012176 196 HVLHLAAQA 204 (469)
Q Consensus 196 ~Vih~Aa~~ 204 (469)
+||-.+|..
T Consensus 82 IVVsa~G~~ 90 (160)
T PF02882_consen 82 IVVSAVGKP 90 (160)
T ss_dssp EEEE-SSST
T ss_pred EEeeeeccc
Confidence 888888863
|
Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A .... |
| >PRK07411 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=94.46 E-value=0.36 Score=49.39 Aligned_cols=112 Identities=18% Similarity=0.094 Sum_probs=66.6
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCC-cEEEEeCCCCCC----------ChhH----HHHHHHhh----ccCCeEEEE
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGD-GVLGLDNFNSYY----------DPSL----KRARQKLL----QKHQVFIVE 176 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~-~V~~~~r~~~~~----------~~~~----~~~~~~~~----~~~~v~~v~ 176 (469)
....+|+|.|+ |.+|..+++.|...|- +++++|...-.. .... .....+.+ ..-.++.+.
T Consensus 36 L~~~~VlivG~-GGlG~~va~~La~~Gvg~l~lvD~D~ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l~~~np~v~v~~~~ 114 (390)
T PRK07411 36 LKAASVLCIGT-GGLGSPLLLYLAAAGIGRIGIVDFDVVDSSNLQRQVIHGTSWVGKPKIESAKNRILEINPYCQVDLYE 114 (390)
T ss_pred HhcCcEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCEecccccCcCcccChHHCCCcHHHHHHHHHHHHCCCCeEEEEe
Confidence 45678999997 9999999999999986 455554322110 0001 01111111 122456666
Q ss_pred ecCCCHHHHHHhhccCCccEEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcCccccC
Q 012176 177 GDLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYG 250 (469)
Q Consensus 177 ~Dl~d~~~l~~~~~~~~~d~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS~~vyg 250 (469)
..++. +...+++.++ |+||.+... ...-..+-++|.+.++ .+|+.+..+-+|
T Consensus 115 ~~~~~-~~~~~~~~~~--D~Vvd~~d~-----------------~~~r~~ln~~~~~~~~--p~v~~~~~g~~g 166 (390)
T PRK07411 115 TRLSS-ENALDILAPY--DVVVDGTDN-----------------FPTRYLVNDACVLLNK--PNVYGSIFRFEG 166 (390)
T ss_pred cccCH-HhHHHHHhCC--CEEEECCCC-----------------HHHHHHHHHHHHHcCC--CEEEEEEccCEE
Confidence 55554 4566778877 999998743 2222334467888876 477766554444
|
|
| >cd05280 MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone oxidoreductases | Back alignment and domain information |
|---|
Probab=94.43 E-value=0.42 Score=46.95 Aligned_cols=35 Identities=43% Similarity=0.415 Sum_probs=31.0
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCC
Q 012176 118 GMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFN 152 (469)
Q Consensus 118 ~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~ 152 (469)
+.+|+|.|++|.+|..+++.+...|.+|+++++..
T Consensus 147 ~~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~~ 181 (325)
T cd05280 147 DGPVLVTGATGGVGSIAVAILAKLGYTVVALTGKE 181 (325)
T ss_pred CCEEEEECCccHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 45899999999999999999999999999988743
|
Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and so |
| >PRK08655 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.37 E-value=0.13 Score=53.56 Aligned_cols=34 Identities=24% Similarity=0.291 Sum_probs=31.5
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCC
Q 012176 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFN 152 (469)
Q Consensus 119 ~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~ 152 (469)
|+|.|+||.|.+|..+++.|.+.|++|++.+|+.
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~G~~V~v~~r~~ 34 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEKGFEVIVTGRDP 34 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHCCCEEEEEECCh
Confidence 5899999999999999999999999999999853
|
|
| >PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=94.30 E-value=0.24 Score=49.89 Aligned_cols=32 Identities=19% Similarity=0.103 Sum_probs=25.0
Q ss_pred CEEEEEcCCChhHHHHHHHHHHC-CCc---EEEEeC
Q 012176 119 MTVLVTGAAGFVGSHCSLALKKR-GDG---VLGLDN 150 (469)
Q Consensus 119 ~~VlVtGatG~IG~~l~~~L~~~-G~~---V~~~~r 150 (469)
++|.|.||||++|+.+++.|+++ ... ++.+..
T Consensus 2 ~~VAIVGATG~vG~ell~llL~~~~f~~~~l~~~ss 37 (369)
T PRK06598 2 KKVGFVGWRGMVGSVLMQRMVEENDFDLIEPVFFST 37 (369)
T ss_pred eEEEEEeCCCHHHHHHHHHHHhCCCCCcCcEEEecc
Confidence 68999999999999999966665 555 555543
|
|
| >PRK14851 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.29 E-value=0.63 Score=50.95 Aligned_cols=108 Identities=17% Similarity=0.116 Sum_probs=65.7
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCC-cEEEEeCCC-------C---CCChhHHHHH----HH----hhccCCeEEEE
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGD-GVLGLDNFN-------S---YYDPSLKRAR----QK----LLQKHQVFIVE 176 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~-~V~~~~r~~-------~---~~~~~~~~~~----~~----~~~~~~v~~v~ 176 (469)
..+.+|+|.|+ |.+|+++++.|...|. +++++|.+. . .....+-+.+ .. ....-.|+.+.
T Consensus 41 L~~~~VlIvG~-GGlGs~va~~Lar~GVG~l~LvD~D~ve~sNLNRQ~~~~~~dvG~~Kv~v~~~~l~~inP~~~I~~~~ 119 (679)
T PRK14851 41 LAEAKVAIPGM-GGVGGVHLITMVRTGIGRFHIADFDQFEPVNVNRQFGARVPSFGRPKLAVMKEQALSINPFLEITPFP 119 (679)
T ss_pred HhcCeEEEECc-CHHHHHHHHHHHHhCCCeEEEEcCCEecccccccCcCcChhhCCCHHHHHHHHHHHHhCCCCeEEEEe
Confidence 45679999996 9999999999999985 444443211 1 0011111111 11 11233577777
Q ss_pred ecCCCHHHHHHhhccCCccEEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEc
Q 012176 177 GDLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWAS 244 (469)
Q Consensus 177 ~Dl~d~~~l~~~~~~~~~d~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~S 244 (469)
..++ .+.+.++++++ |+||++.-... +..-..+.+.|.+.++. +|+.+
T Consensus 120 ~~i~-~~n~~~~l~~~--DvVid~~D~~~---------------~~~r~~l~~~c~~~~iP--~i~~g 167 (679)
T PRK14851 120 AGIN-ADNMDAFLDGV--DVVLDGLDFFQ---------------FEIRRTLFNMAREKGIP--VITAG 167 (679)
T ss_pred cCCC-hHHHHHHHhCC--CEEEECCCCCc---------------HHHHHHHHHHHHHCCCC--EEEee
Confidence 7775 55678889887 99998763211 11223566778888874 66654
|
|
| >PRK06153 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.24 E-value=0.57 Score=47.33 Aligned_cols=105 Identities=11% Similarity=0.007 Sum_probs=64.2
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCC-cEEEEeCCC--------C--CC-Chh------HHHHHHHhhc--cCCeEEE
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGD-GVLGLDNFN--------S--YY-DPS------LKRARQKLLQ--KHQVFIV 175 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~-~V~~~~r~~--------~--~~-~~~------~~~~~~~~~~--~~~v~~v 175 (469)
..+.+|+|.|+ |.+|++++..|.+.|- +++++|-.. . .. ... +.......+. ..++..+
T Consensus 174 L~~~~VaIVG~-GG~GS~Va~~LAR~GVgeI~LVD~D~Ve~SNLnRQ~gaf~~~DvGk~~~KVevaa~rl~~in~~I~~~ 252 (393)
T PRK06153 174 LEGQRIAIIGL-GGTGSYILDLVAKTPVREIHLFDGDDFLQHNAFRSPGAASIEELREAPKKVDYFKSRYSNMRRGIVPH 252 (393)
T ss_pred HhhCcEEEEcC-CccHHHHHHHHHHcCCCEEEEECCCEecccccccccccCCHhHcCCcchHHHHHHHHHHHhCCeEEEE
Confidence 45678999997 9999999999999985 566665321 0 00 011 1111111111 2356666
Q ss_pred EecCCCHHHHHHhhccCCccEEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEc
Q 012176 176 EGDLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWAS 244 (469)
Q Consensus 176 ~~Dl~d~~~l~~~~~~~~~d~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~S 244 (469)
...+ +++.+. .+.++ |+||.|.-. ..+=..+.++|.+.++. +|.++
T Consensus 253 ~~~I-~~~n~~-~L~~~--DiV~dcvDn-----------------~~aR~~ln~~a~~~gIP--~Id~G 298 (393)
T PRK06153 253 PEYI-DEDNVD-ELDGF--TFVFVCVDK-----------------GSSRKLIVDYLEALGIP--FIDVG 298 (393)
T ss_pred eecC-CHHHHH-HhcCC--CEEEEcCCC-----------------HHHHHHHHHHHHHcCCC--EEEee
Confidence 6666 556555 56666 999999842 33334556778888764 66654
|
|
| >PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=94.24 E-value=0.18 Score=49.85 Aligned_cols=34 Identities=24% Similarity=0.395 Sum_probs=30.8
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCC
Q 012176 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNS 153 (469)
Q Consensus 119 ~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~ 153 (469)
++|.|.|+ |.+|..++..|++.|++|++++++.+
T Consensus 5 ~~I~vIGa-G~mG~~iA~~l~~~g~~V~~~d~~~~ 38 (311)
T PRK06130 5 QNLAIIGA-GTMGSGIAALFARKGLQVVLIDVMEG 38 (311)
T ss_pred cEEEEECC-CHHHHHHHHHHHhCCCeEEEEECCHH
Confidence 67999996 99999999999999999999998654
|
|
| >COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.21 E-value=0.13 Score=50.78 Aligned_cols=26 Identities=35% Similarity=0.337 Sum_probs=23.3
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHCCC
Q 012176 118 GMTVLVTGAAGFVGSHCSLALKKRGD 143 (469)
Q Consensus 118 ~~~VlVtGatG~IG~~l~~~L~~~G~ 143 (469)
+++|.|.||||.+|+.+++.|.++..
T Consensus 1 ~~~VavvGATG~VG~~~~~~L~e~~f 26 (334)
T COG0136 1 KLNVAVLGATGAVGQVLLELLEERHF 26 (334)
T ss_pred CcEEEEEeccchHHHHHHHHHHhcCC
Confidence 46899999999999999999999753
|
|
| >PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3 | Back alignment and domain information |
|---|
Probab=94.18 E-value=0.35 Score=42.80 Aligned_cols=70 Identities=21% Similarity=0.172 Sum_probs=44.9
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCc
Q 012176 115 RPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPF 194 (469)
Q Consensus 115 ~~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~ 194 (469)
...+|+++|+| -|.+|+-+++.|...|.+|++.+.++ .+..+...+ +.++.. +++++...
T Consensus 20 ~l~Gk~vvV~G-YG~vG~g~A~~lr~~Ga~V~V~e~DP-------i~alqA~~d--Gf~v~~--------~~~a~~~a-- 79 (162)
T PF00670_consen 20 MLAGKRVVVIG-YGKVGKGIARALRGLGARVTVTEIDP-------IRALQAAMD--GFEVMT--------LEEALRDA-- 79 (162)
T ss_dssp --TTSEEEEE---SHHHHHHHHHHHHTT-EEEEE-SSH-------HHHHHHHHT--T-EEE---------HHHHTTT---
T ss_pred eeCCCEEEEeC-CCcccHHHHHHHhhCCCEEEEEECCh-------HHHHHhhhc--CcEecC--------HHHHHhhC--
Confidence 36889999999 59999999999999999999998722 223333322 555442 55677777
Q ss_pred cEEEEccccc
Q 012176 195 THVLHLAAQA 204 (469)
Q Consensus 195 d~Vih~Aa~~ 204 (469)
|++|.+-|..
T Consensus 80 di~vtaTG~~ 89 (162)
T PF00670_consen 80 DIFVTATGNK 89 (162)
T ss_dssp SEEEE-SSSS
T ss_pred CEEEECCCCc
Confidence 9999887763
|
3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C .... |
| >PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.18 E-value=0.11 Score=50.68 Aligned_cols=56 Identities=14% Similarity=0.144 Sum_probs=46.3
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEe-CCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCC
Q 012176 115 RPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLD-NFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVP 193 (469)
Q Consensus 115 ~~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~-r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~ 193 (469)
..+|++|.|.|-++.+|.-++..|+++|+.|++.. |.. .++++++.+
T Consensus 155 ~~~Gk~V~viGrs~~mG~PmA~~L~~~g~tVtv~~~rT~-------------------------------~l~e~~~~A- 202 (296)
T PRK14188 155 DLSGLNAVVIGRSNLVGKPMAQLLLAANATVTIAHSRTR-------------------------------DLPAVCRRA- 202 (296)
T ss_pred CCCCCEEEEEcCCcchHHHHHHHHHhCCCEEEEECCCCC-------------------------------CHHHHHhcC-
Confidence 37899999999999999999999999999999995 411 145566667
Q ss_pred ccEEEEcccc
Q 012176 194 FTHVLHLAAQ 203 (469)
Q Consensus 194 ~d~Vih~Aa~ 203 (469)
|+||-+.+.
T Consensus 203 -DIVIsavg~ 211 (296)
T PRK14188 203 -DILVAAVGR 211 (296)
T ss_pred -CEEEEecCC
Confidence 999988876
|
|
| >PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=94.17 E-value=0.017 Score=52.47 Aligned_cols=35 Identities=26% Similarity=0.253 Sum_probs=29.5
Q ss_pred EEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCC
Q 012176 120 TVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYY 155 (469)
Q Consensus 120 ~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~ 155 (469)
+|.|.|| |.+|+.++..++..|++|++.+++.+..
T Consensus 1 ~V~ViGa-G~mG~~iA~~~a~~G~~V~l~d~~~~~l 35 (180)
T PF02737_consen 1 KVAVIGA-GTMGRGIAALFARAGYEVTLYDRSPEAL 35 (180)
T ss_dssp EEEEES--SHHHHHHHHHHHHTTSEEEEE-SSHHHH
T ss_pred CEEEEcC-CHHHHHHHHHHHhCCCcEEEEECChHHH
Confidence 5899997 9999999999999999999999966533
|
1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B .... |
| >COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.16 E-value=0.16 Score=49.39 Aligned_cols=36 Identities=25% Similarity=0.368 Sum_probs=32.0
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCC-CcEEEEeCCC
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRG-DGVLGLDNFN 152 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G-~~V~~~~r~~ 152 (469)
..+++|+|.|| |+.+++++..|++.| .+|+++.|..
T Consensus 124 ~~~~~vlilGA-GGAarAv~~aL~~~g~~~i~V~NRt~ 160 (283)
T COG0169 124 VTGKRVLILGA-GGAARAVAFALAEAGAKRITVVNRTR 160 (283)
T ss_pred cCCCEEEEECC-cHHHHHHHHHHHHcCCCEEEEEeCCH
Confidence 46799999996 999999999999999 5799999954
|
|
| >cd05282 ETR_like 2-enoyl thioester reductase-like | Back alignment and domain information |
|---|
Probab=94.15 E-value=0.47 Score=46.60 Aligned_cols=79 Identities=14% Similarity=0.034 Sum_probs=50.7
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeE-EEEecC-CCHHHHHHhhccCC
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVF-IVEGDL-NDAPLLTKLFDVVP 193 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~-~v~~Dl-~d~~~l~~~~~~~~ 193 (469)
..+.+|+|.|++|.+|..+++.+...|.+|+++++..+. ...+...++. ++..+- ...+.+.+...+.+
T Consensus 137 ~~~~~vlI~g~~~~vg~~~~~~a~~~g~~v~~~~~~~~~---------~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 207 (323)
T cd05282 137 PPGDWVIQNAANSAVGRMLIQLAKLLGFKTINVVRRDEQ---------VEELKALGADEVIDSSPEDLAQRVKEATGGAG 207 (323)
T ss_pred CCCCEEEEcccccHHHHHHHHHHHHCCCeEEEEecChHH---------HHHHHhcCCCEEecccchhHHHHHHHHhcCCC
Confidence 456799999999999999999999999999988874421 1111111322 121111 11233444555556
Q ss_pred ccEEEEcccc
Q 012176 194 FTHVLHLAAQ 203 (469)
Q Consensus 194 ~d~Vih~Aa~ 203 (469)
+|+|+++.+.
T Consensus 208 ~d~vl~~~g~ 217 (323)
T cd05282 208 ARLALDAVGG 217 (323)
T ss_pred ceEEEECCCC
Confidence 7999998874
|
2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossman |
| >COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.11 E-value=0.19 Score=49.94 Aligned_cols=68 Identities=21% Similarity=0.162 Sum_probs=51.1
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCccEE
Q 012176 118 GMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTHV 197 (469)
Q Consensus 118 ~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~d~V 197 (469)
+++|.|.|| |.+|+-++.+-.+.|++|++++-..+...... --..+.++.+|.+.+.++.+.+ |+|
T Consensus 1 ~~tvgIlGG-GQLgrMm~~aa~~lG~~v~vLdp~~~~PA~~v-----------a~~~i~~~~dD~~al~ela~~~--DVi 66 (375)
T COG0026 1 MKTVGILGG-GQLGRMMALAAARLGIKVIVLDPDADAPAAQV-----------ADRVIVAAYDDPEALRELAAKC--DVI 66 (375)
T ss_pred CCeEEEEcC-cHHHHHHHHHHHhcCCEEEEecCCCCCchhhc-----------ccceeecCCCCHHHHHHHHhhC--CEE
Confidence 468999997 99999999999999999999986443211110 1235666777899999999888 776
Q ss_pred EE
Q 012176 198 LH 199 (469)
Q Consensus 198 ih 199 (469)
=.
T Consensus 67 T~ 68 (375)
T COG0026 67 TY 68 (375)
T ss_pred EE
Confidence 43
|
|
| >cd08268 MDR2 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=94.09 E-value=0.47 Score=46.36 Aligned_cols=79 Identities=16% Similarity=0.140 Sum_probs=49.7
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCe-EEEEecCCC-HHHHHHhhccCC
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQV-FIVEGDLND-APLLTKLFDVVP 193 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v-~~v~~Dl~d-~~~l~~~~~~~~ 193 (469)
..+.+|+|+|++|.+|..+++.+...|.+|+++++... ... .+...++ .++..+..+ .+.+.+...+.+
T Consensus 143 ~~~~~vli~g~~~~~g~~~~~~~~~~g~~v~~~~~~~~----~~~-----~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 213 (328)
T cd08268 143 RPGDSVLITAASSSVGLAAIQIANAAGATVIATTRTSE----KRD-----ALLALGAAHVIVTDEEDLVAEVLRITGGKG 213 (328)
T ss_pred CCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHH----HHH-----HHHHcCCCEEEecCCccHHHHHHHHhCCCC
Confidence 35679999999999999999999999999999987432 111 1111122 222222212 122344444445
Q ss_pred ccEEEEcccc
Q 012176 194 FTHVLHLAAQ 203 (469)
Q Consensus 194 ~d~Vih~Aa~ 203 (469)
+|+++++.+.
T Consensus 214 ~d~vi~~~~~ 223 (328)
T cd08268 214 VDVVFDPVGG 223 (328)
T ss_pred ceEEEECCch
Confidence 7999998864
|
This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh |
| >cd05288 PGDH Prostaglandin dehydrogenases | Back alignment and domain information |
|---|
Probab=94.07 E-value=0.58 Score=46.15 Aligned_cols=36 Identities=39% Similarity=0.449 Sum_probs=32.3
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCC
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNF 151 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~ 151 (469)
..+.+|+|.|++|.+|..+++.+.+.|.+|+++++.
T Consensus 144 ~~~~~vlI~g~~g~ig~~~~~~a~~~G~~vi~~~~~ 179 (329)
T cd05288 144 KPGETVVVSAAAGAVGSVVGQIAKLLGARVVGIAGS 179 (329)
T ss_pred CCCCEEEEecCcchHHHHHHHHHHHcCCEEEEEeCC
Confidence 356899999999999999999999999999998863
|
Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino |
| >PRK14852 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.06 E-value=0.52 Score=53.05 Aligned_cols=113 Identities=12% Similarity=-0.042 Sum_probs=68.3
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCC-cEEEEeCCCCC----------CChh----HHHHHHHh----hccCCeEEEE
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGD-GVLGLDNFNSY----------YDPS----LKRARQKL----LQKHQVFIVE 176 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~-~V~~~~r~~~~----------~~~~----~~~~~~~~----~~~~~v~~v~ 176 (469)
....+|+|.|+ |++|..+++.|...|- +++++|.+.-. .... +.....+. ...-.|+.+.
T Consensus 330 L~~srVlVvGl-GGlGs~ia~~LAraGVG~I~L~D~D~Ve~SNLNRQ~l~~~~dIG~~Kaevaa~~l~~INP~v~I~~~~ 408 (989)
T PRK14852 330 LLRSRVAIAGL-GGVGGIHLMTLARTGIGNFNLADFDAYSPVNLNRQYGASIASFGRGKLDVMTERALSVNPFLDIRSFP 408 (989)
T ss_pred HhcCcEEEECC-cHHHHHHHHHHHHcCCCeEEEEcCCEecccccccccCCChhhCCChHHHHHHHHHHHHCCCCeEEEEe
Confidence 45678999996 9999999999999985 45554321110 0011 11111111 1122556665
Q ss_pred ecCCCHHHHHHhhccCCccEEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcCcccc
Q 012176 177 GDLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVY 249 (469)
Q Consensus 177 ~Dl~d~~~l~~~~~~~~~d~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS~~vy 249 (469)
..+ +.+.+.++++++ |+||.+.-... +..-..+.+.|.+.++. +|+.++.+.+
T Consensus 409 ~~I-~~en~~~fl~~~--DiVVDa~D~~~---------------~~~rr~l~~~c~~~~IP--~I~ag~~G~~ 461 (989)
T PRK14852 409 EGV-AAETIDAFLKDV--DLLVDGIDFFA---------------LDIRRRLFNRALELGIP--VITAGPLGYS 461 (989)
T ss_pred cCC-CHHHHHHHhhCC--CEEEECCCCcc---------------HHHHHHHHHHHHHcCCC--EEEeeccccC
Confidence 555 456788899888 99998764311 12234667778888874 7776664433
|
|
| >cd05276 p53_inducible_oxidoreductase PIG3 p53-inducible quinone oxidoreductase | Back alignment and domain information |
|---|
Probab=94.05 E-value=0.24 Score=48.26 Aligned_cols=78 Identities=17% Similarity=0.147 Sum_probs=50.1
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHH---HHHHhhccC
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAP---LLTKLFDVV 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~---~l~~~~~~~ 192 (469)
..+.+|+|+|++|.+|..+++.+...|.+|+++++..+ ..... .. -++..+ .|..+.+ .+.+...+.
T Consensus 138 ~~~~~vlv~g~~~~ig~~~~~~~~~~g~~v~~~~~~~~----~~~~~-~~----~g~~~~-~~~~~~~~~~~~~~~~~~~ 207 (323)
T cd05276 138 KAGETVLIHGGASGVGTAAIQLAKALGARVIATAGSEE----KLEAC-RA----LGADVA-INYRTEDFAEEVKEATGGR 207 (323)
T ss_pred CCCCEEEEEcCcChHHHHHHHHHHHcCCEEEEEcCCHH----HHHHH-HH----cCCCEE-EeCCchhHHHHHHHHhCCC
Confidence 45689999999999999999999999999999887432 11111 11 122211 2222222 233444444
Q ss_pred CccEEEEcccc
Q 012176 193 PFTHVLHLAAQ 203 (469)
Q Consensus 193 ~~d~Vih~Aa~ 203 (469)
++|++++++|.
T Consensus 208 ~~d~vi~~~g~ 218 (323)
T cd05276 208 GVDVILDMVGG 218 (323)
T ss_pred CeEEEEECCch
Confidence 57999999874
|
PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding |
| >KOG1196 consensus Predicted NAD-dependent oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.03 E-value=0.38 Score=46.44 Aligned_cols=106 Identities=19% Similarity=0.131 Sum_probs=65.1
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccC-CeEEEEecCCCHHHHHHhhccC--
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKH-QVFIVEGDLNDAPLLTKLFDVV-- 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~-~v~~v~~Dl~d~~~l~~~~~~~-- 192 (469)
.++++|+|.||+|-+|+-+-+-..-.|..|++..-+++ +-..+... +.. ...|.-++..+.++++.+
T Consensus 152 k~geTv~VSaAsGAvGql~GQ~Ak~~Gc~VVGsaGS~E---------Kv~ll~~~~G~d-~afNYK~e~~~~~aL~r~~P 221 (343)
T KOG1196|consen 152 KKGETVFVSAASGAVGQLVGQFAKLMGCYVVGSAGSKE---------KVDLLKTKFGFD-DAFNYKEESDLSAALKRCFP 221 (343)
T ss_pred CCCCEEEEeeccchhHHHHHHHHHhcCCEEEEecCChh---------hhhhhHhccCCc-cceeccCccCHHHHHHHhCC
Confidence 46699999999999999888877778999999875433 11111111 110 112233333444444332
Q ss_pred -CccEEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcCccccCCC
Q 012176 193 -PFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLN 252 (469)
Q Consensus 193 -~~d~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS~~vyg~~ 252 (469)
++|+-+.|.|..- ...++..++.+| |++.++-++.|...
T Consensus 222 ~GIDiYfeNVGG~~------------------lDavl~nM~~~g---ri~~CG~ISqYN~~ 261 (343)
T KOG1196|consen 222 EGIDIYFENVGGKM------------------LDAVLLNMNLHG---RIAVCGMISQYNLE 261 (343)
T ss_pred CcceEEEeccCcHH------------------HHHHHHhhhhcc---ceEeeeeehhcccc
Confidence 5699999998610 123333344444 89999988988654
|
|
| >cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH) | Back alignment and domain information |
|---|
Probab=94.01 E-value=0.53 Score=47.33 Aligned_cols=77 Identities=23% Similarity=0.248 Sum_probs=48.4
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCC-cEEEEeCCCCCCChhHHHHHHHhhccCCeE-EEEecC-CCH---HHHHHhhc
Q 012176 117 NGMTVLVTGAAGFVGSHCSLALKKRGD-GVLGLDNFNSYYDPSLKRARQKLLQKHQVF-IVEGDL-NDA---PLLTKLFD 190 (469)
Q Consensus 117 ~~~~VlVtGatG~IG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~-~v~~Dl-~d~---~~l~~~~~ 190 (469)
.+.+|||+| +|.+|..+++.+...|. +|+++++... +...+...++. ++..+- .+. ..+.++..
T Consensus 177 ~g~~vlI~g-~g~vG~~~~~lak~~G~~~v~~~~~~~~---------~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~ 246 (361)
T cd08231 177 AGDTVVVQG-AGPLGLYAVAAAKLAGARRVIVIDGSPE---------RLELAREFGADATIDIDELPDPQRRAIVRDITG 246 (361)
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHHcCCCeEEEEcCCHH---------HHHHHHHcCCCeEEcCcccccHHHHHHHHHHhC
Confidence 678999997 59999999999999999 8988876332 11111112332 221111 111 23455555
Q ss_pred cCCccEEEEcccc
Q 012176 191 VVPFTHVLHLAAQ 203 (469)
Q Consensus 191 ~~~~d~Vih~Aa~ 203 (469)
+.++|+||++.|.
T Consensus 247 ~~~~d~vid~~g~ 259 (361)
T cd08231 247 GRGADVVIEASGH 259 (361)
T ss_pred CCCCcEEEECCCC
Confidence 5567999999864
|
This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino |
| >PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.00 E-value=0.16 Score=52.32 Aligned_cols=68 Identities=19% Similarity=0.211 Sum_probs=47.7
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCcc
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFT 195 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~d 195 (469)
..+++|+|+|. |.||+.+++.|...|.+|+++++.... ..... ..++.+. + ++++++++ |
T Consensus 210 l~Gk~VlViG~-G~IG~~vA~~lr~~Ga~ViV~d~dp~r-------a~~A~--~~G~~v~-----~---l~eal~~a--D 269 (425)
T PRK05476 210 IAGKVVVVAGY-GDVGKGCAQRLRGLGARVIVTEVDPIC-------ALQAA--MDGFRVM-----T---MEEAAELG--D 269 (425)
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEcCCchh-------hHHHH--hcCCEec-----C---HHHHHhCC--C
Confidence 57899999996 999999999999999999999874421 11111 1133322 2 34566666 9
Q ss_pred EEEEcccc
Q 012176 196 HVLHLAAQ 203 (469)
Q Consensus 196 ~Vih~Aa~ 203 (469)
+||.+.|.
T Consensus 270 VVI~aTG~ 277 (425)
T PRK05476 270 IFVTATGN 277 (425)
T ss_pred EEEECCCC
Confidence 99988753
|
|
| >PRK13940 glutamyl-tRNA reductase; Provisional | Back alignment and domain information |
|---|
Probab=93.94 E-value=0.23 Score=51.12 Aligned_cols=75 Identities=11% Similarity=0.052 Sum_probs=51.3
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCC-cEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCc
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGD-GVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPF 194 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~ 194 (469)
..+++|+|.|+ |.+|+.+++.|.+.|. +|+++.|... ......... +... +...+++.+++..+
T Consensus 179 l~~kkvlviGa-G~~a~~va~~L~~~g~~~I~V~nRt~~-----ra~~La~~~--~~~~-----~~~~~~l~~~l~~a-- 243 (414)
T PRK13940 179 ISSKNVLIIGA-GQTGELLFRHVTALAPKQIMLANRTIE-----KAQKITSAF--RNAS-----AHYLSELPQLIKKA-- 243 (414)
T ss_pred ccCCEEEEEcC-cHHHHHHHHHHHHcCCCEEEEECCCHH-----HHHHHHHHh--cCCe-----EecHHHHHHHhccC--
Confidence 56789999997 9999999999999995 7899988432 111111111 1122 22345667788877
Q ss_pred cEEEEcccccC
Q 012176 195 THVLHLAAQAG 205 (469)
Q Consensus 195 d~Vih~Aa~~~ 205 (469)
|+||++-+...
T Consensus 244 DiVI~aT~a~~ 254 (414)
T PRK13940 244 DIIIAAVNVLE 254 (414)
T ss_pred CEEEECcCCCC
Confidence 99999987633
|
|
| >PRK13243 glyoxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=93.93 E-value=0.16 Score=50.78 Aligned_cols=67 Identities=18% Similarity=0.098 Sum_probs=48.4
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCc
Q 012176 115 RPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPF 194 (469)
Q Consensus 115 ~~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~ 194 (469)
...+++|.|.|. |-||+.+++.|...|.+|++.+|.... . ... ..++. ..+++++++.+
T Consensus 147 ~L~gktvgIiG~-G~IG~~vA~~l~~~G~~V~~~d~~~~~------~-~~~---~~~~~--------~~~l~ell~~a-- 205 (333)
T PRK13243 147 DVYGKTIGIIGF-GRIGQAVARRAKGFGMRILYYSRTRKP------E-AEK---ELGAE--------YRPLEELLRES-- 205 (333)
T ss_pred CCCCCEEEEECc-CHHHHHHHHHHHHCCCEEEEECCCCCh------h-hHH---HcCCE--------ecCHHHHHhhC--
Confidence 467899999996 999999999999999999999985421 0 000 01111 12466788888
Q ss_pred cEEEEccc
Q 012176 195 THVLHLAA 202 (469)
Q Consensus 195 d~Vih~Aa 202 (469)
|+|+.+.-
T Consensus 206 DiV~l~lP 213 (333)
T PRK13243 206 DFVSLHVP 213 (333)
T ss_pred CEEEEeCC
Confidence 99888774
|
|
| >PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain | Back alignment and domain information |
|---|
Probab=93.92 E-value=0.26 Score=39.29 Aligned_cols=66 Identities=18% Similarity=0.175 Sum_probs=41.3
Q ss_pred EEEEEcCCChhHHHHHHHHHHCC---CcEEEE-eCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCcc
Q 012176 120 TVLVTGAAGFVGSHCSLALKKRG---DGVLGL-DNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFT 195 (469)
Q Consensus 120 ~VlVtGatG~IG~~l~~~L~~~G---~~V~~~-~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~d 195 (469)
||.|+| +|.+|..|++.|++.| ++|++. +|+.+ + ........++.+...| ..++++.+ |
T Consensus 1 kI~iIG-~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~-------~-~~~~~~~~~~~~~~~~------~~~~~~~a--d 63 (96)
T PF03807_consen 1 KIGIIG-AGNMGSALARGLLASGIKPHEVIIVSSRSPE-------K-AAELAKEYGVQATADD------NEEAAQEA--D 63 (96)
T ss_dssp EEEEES-TSHHHHHHHHHHHHTTS-GGEEEEEEESSHH-------H-HHHHHHHCTTEEESEE------HHHHHHHT--S
T ss_pred CEEEEC-CCHHHHHHHHHHHHCCCCceeEEeeccCcHH-------H-HHHHHHhhccccccCC------hHHhhccC--C
Confidence 577786 5999999999999999 999965 77332 1 1111122233333322 44566666 9
Q ss_pred EEEEccc
Q 012176 196 HVLHLAA 202 (469)
Q Consensus 196 ~Vih~Aa 202 (469)
+||-+.-
T Consensus 64 vvilav~ 70 (96)
T PF03807_consen 64 VVILAVK 70 (96)
T ss_dssp EEEE-S-
T ss_pred EEEEEEC
Confidence 9998763
|
It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D .... |
| >PRK08040 putative semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.89 E-value=0.27 Score=49.16 Aligned_cols=35 Identities=26% Similarity=0.340 Sum_probs=28.2
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCC---cEEEEeC
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGD---GVLGLDN 150 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~---~V~~~~r 150 (469)
.++++|.|.||||++|..+++.|.++.| ++..+..
T Consensus 2 ~~~~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS 39 (336)
T PRK08040 2 SEGWNIALLGATGAVGEALLELLAERQFPVGELYALAS 39 (336)
T ss_pred CCCCEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEc
Confidence 3678999999999999999999999644 5555543
|
|
| >cd08248 RTN4I1 Human Reticulon 4 Interacting Protein 1 | Back alignment and domain information |
|---|
Probab=93.81 E-value=0.62 Score=46.41 Aligned_cols=76 Identities=22% Similarity=0.187 Sum_probs=48.5
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCccE
Q 012176 117 NGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTH 196 (469)
Q Consensus 117 ~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~d~ 196 (469)
.+.+|+|+|++|.+|..+++.+...|.+|+++++.. . ..... ..++..+ .|..+.+..+.+....++|+
T Consensus 162 ~g~~vlI~g~~g~ig~~~~~~a~~~G~~v~~~~~~~-----~-~~~~~----~~g~~~~-~~~~~~~~~~~l~~~~~vd~ 230 (350)
T cd08248 162 AGKRVLILGGSGGVGTFAIQLLKAWGAHVTTTCSTD-----A-IPLVK----SLGADDV-IDYNNEDFEEELTERGKFDV 230 (350)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCcc-----h-HHHHH----HhCCceE-EECCChhHHHHHHhcCCCCE
Confidence 378999999999999999999999999998887521 1 11111 1122211 23333333333333345699
Q ss_pred EEEcccc
Q 012176 197 VLHLAAQ 203 (469)
Q Consensus 197 Vih~Aa~ 203 (469)
|+++.+.
T Consensus 231 vi~~~g~ 237 (350)
T cd08248 231 ILDTVGG 237 (350)
T ss_pred EEECCCh
Confidence 9998864
|
Human Reticulon 4 Interacting Protein 1 is a member of the medium chain dehydrogenase/ reductase (MDR) family. Riticulons are endoplasmic reticulum associated proteins involved in membrane trafficking and neuroendocrine secretion. The MDR/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. |
| >cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
|---|
Probab=93.79 E-value=0.21 Score=43.20 Aligned_cols=58 Identities=26% Similarity=0.292 Sum_probs=47.8
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCc
Q 012176 115 RPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPF 194 (469)
Q Consensus 115 ~~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~ 194 (469)
..++++|+|.|.+.-+|.-++..|.++|..|+.+.+.. .++++.++.+
T Consensus 25 ~~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t------------------------------~~l~~~v~~A-- 72 (140)
T cd05212 25 RLDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKT------------------------------IQLQSKVHDA-- 72 (140)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCC------------------------------cCHHHHHhhC--
Confidence 37899999999999999999999999999999987521 1355567777
Q ss_pred cEEEEccccc
Q 012176 195 THVLHLAAQA 204 (469)
Q Consensus 195 d~Vih~Aa~~ 204 (469)
|+||-..|..
T Consensus 73 DIVvsAtg~~ 82 (140)
T cd05212 73 DVVVVGSPKP 82 (140)
T ss_pred CEEEEecCCC
Confidence 9999888763
|
NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional |
| >TIGR01142 purT phosphoribosylglycinamide formyltransferase 2 | Back alignment and domain information |
|---|
Probab=93.79 E-value=0.22 Score=50.64 Aligned_cols=71 Identities=15% Similarity=0.278 Sum_probs=53.4
Q ss_pred EEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCccEEEE
Q 012176 120 TVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTHVLH 199 (469)
Q Consensus 120 ~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~d~Vih 199 (469)
+|+|.|+ |.+|..+++++.+.|++|++++..... ... .. . . +.+.+|..|.+.+.++++..++|+|+-
T Consensus 1 kililG~-g~~~~~l~~aa~~~G~~v~~~d~~~~~--~~~-----~~-a--d-~~~~~~~~d~~~l~~~~~~~~id~v~~ 68 (380)
T TIGR01142 1 RVLLLGS-GELGKEVAIEAQRLGVEVIAVDRYANA--PAM-----QV-A--H-RSYVINMLDGDALRAVIEREKPDYIVP 68 (380)
T ss_pred CEEEECC-CHHHHHHHHHHHHcCCEEEEEeCCCCC--chh-----hh-C--c-eEEEcCCCCHHHHHHHHHHhCCCEEEe
Confidence 5899995 999999999999999999999885431 110 11 1 1 345678889999999988767799986
Q ss_pred ccc
Q 012176 200 LAA 202 (469)
Q Consensus 200 ~Aa 202 (469)
...
T Consensus 69 ~~e 71 (380)
T TIGR01142 69 EIE 71 (380)
T ss_pred ccC
Confidence 543
|
This enzyme is an alternative to PurN (TIGR00639) |
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 469 | ||||
| 1sb8_A | 352 | Crystal Structure Of Pseudomonas Aeruginosa Udp-N-A | 2e-32 | ||
| 3ru9_A | 351 | Specific Recognition Of N-Acetylated Substrates And | 4e-32 | ||
| 3ru7_A | 351 | Specific Recognition Of N-Acetylated Substrates And | 4e-32 | ||
| 3lu1_A | 364 | Crystal Structure Analysis Of Wbgu: A Udp-Galnac 4- | 6e-32 | ||
| 3ruc_A | 351 | Specific Recognition Of N-Acetylated Substrates And | 1e-31 | ||
| 1ek5_A | 348 | Structure Of Human Udp-Galactose 4-Epimerase In Com | 9e-24 | ||
| 1hzj_A | 348 | Human Udp-Galactose 4-Epimerase: Accommodation Of U | 1e-23 | ||
| 1i3k_A | 348 | Molecular Basis For Severe Epimerase-Deficiency Gal | 3e-23 | ||
| 3vps_A | 321 | Structure Of A Novel Nad Dependent-Ndp-Hexosamine 5 | 2e-22 | ||
| 1lrk_A | 338 | Crystal Structure Of Escherichia Coli Udp-Galactose | 1e-21 | ||
| 1lrj_A | 338 | Crystal Structure Of E. Coli Udp-Galactose 4-Epimer | 2e-21 | ||
| 1kvs_A | 338 | Udp-Galactose 4-Epimerase Complexed With Udp-Phenol | 3e-21 | ||
| 1kvq_A | 338 | Udp-Galactose 4-Epimerase Complexed With Udp-Phenol | 4e-21 | ||
| 1kvt_A | 338 | Udp-Galactose 4-Epimerase Complexed With Udp-Phenol | 6e-21 | ||
| 2udp_A | 338 | Udp-Galactose 4-Epimerase Complexed With Udp-Phenol | 7e-21 | ||
| 3icp_A | 312 | Crystal Structure Of Udp-Galactose 4-Epimerase Leng | 8e-21 | ||
| 1a9z_A | 338 | Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEX | 9e-21 | ||
| 1kvr_A | 338 | Udp-Galactose 4-Epimerase Complexed With Udp-Phenol | 2e-20 | ||
| 1kvu_A | 338 | Udp-Galactose 4-Epimerase Complexed With Udp-Phenol | 2e-20 | ||
| 3sxp_A | 362 | Crystal Structure Of Helicobacter Pylori Adp-L-Glyc | 3e-20 | ||
| 1a9y_A | 338 | Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEX | 5e-20 | ||
| 2hun_A | 336 | Crystal Structure Of Hypothetical Protein Ph0414 Fr | 7e-20 | ||
| 2p5u_A | 311 | Crystal Structure Of Thermus Thermophilus Hb8 Udp-G | 9e-20 | ||
| 1r6d_A | 337 | Crystal Structure Of Desiv Double Mutant (Dtdp-Gluc | 3e-19 | ||
| 1r66_A | 337 | Crystal Structure Of Desiv (Dtdp-Glucose 4,6-Dehydr | 3e-19 | ||
| 3aw9_A | 308 | Structure Of Udp-Galactose 4-Epimerase Mutant Lengt | 2e-18 | ||
| 3ehe_A | 313 | Crystal Structure Of Udp-Glucose 4 Epimerase (Gale- | 7e-18 | ||
| 1g1a_A | 361 | The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydra | 6e-17 | ||
| 4egb_A | 346 | 3.0 Angstrom Resolution Crystal Structure Of Dtdp-G | 9e-17 | ||
| 1bxk_A | 355 | Dtdp-Glucose 4,6-Dehydratase From E. Coli Length = | 9e-17 | ||
| 4ef7_B | 337 | Udp-Xylose Synthase Length = 337 | 2e-16 | ||
| 2c20_A | 330 | Crystal Structure Of Udp-Glucose 4-Epimerase Length | 5e-16 | ||
| 1z45_A | 699 | Crystal Structure Of The Gal10 Fusion Protein Galac | 7e-16 | ||
| 2c59_A | 379 | Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana | 1e-15 | ||
| 2b69_A | 343 | Crystal Structure Of Human Udp-Glucoronic Acid Deca | 1e-15 | ||
| 2c5e_A | 379 | Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana | 1e-15 | ||
| 2c54_A | 379 | Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana | 2e-15 | ||
| 2c5a_A | 379 | Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana | 2e-15 | ||
| 3enk_A | 341 | 1.9a Crystal Structure Of Udp-Glucose 4-Epimerase F | 1e-14 | ||
| 2q1w_A | 333 | Crystal Structure Of The Bordetella Bronchiseptica | 6e-14 | ||
| 2pk3_A | 321 | Crystal Structure Of A Gdp-4-Keto-6-Deoxy-D-Mannose | 9e-14 | ||
| 1orr_A | 347 | Crystal Structure Of Cdp-tyvelose 2-epimerase Compl | 3e-11 | ||
| 2pzk_A | 330 | Crystal Structure Of The Bordetella Bronchiseptica | 5e-10 | ||
| 2pzj_A | 377 | Crystal Structure Of The Bordetella Bronchiseptica | 1e-08 | ||
| 3m2p_A | 311 | The Crystal Structure Of Udp-N-Acetylglucosamine 4- | 2e-08 | ||
| 1kep_A | 348 | The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydra | 9e-08 | ||
| 1gy8_A | 397 | Trypanosoma Brucei Udp-Galactose 4' Epimerase Lengt | 2e-07 | ||
| 2z1m_A | 345 | Crystal Structure Of Gdp-D-Mannose Dehydratase From | 3e-07 | ||
| 1n7g_A | 381 | Crystal Structure Of The Gdp-mannose 4,6-dehydratas | 4e-07 | ||
| 1wvg_A | 359 | Structure Of Cdp-D-Glucose 4,6-Dehydratase From Sal | 6e-07 | ||
| 2bll_A | 345 | Apo-Structure Of The C-Terminal Decarboxylase Domai | 1e-06 | ||
| 1eq2_A | 310 | The Crystal Structure Of Adp-L-Glycero-D-Mannohepto | 2e-06 | ||
| 1u9j_A | 358 | Crystal Structure Of E. Coli Arna (Pmri) Decarboxyl | 4e-06 | ||
| 1z74_A | 358 | Crystal Structure Of E.Coli Arna Dehydrogenase (Dec | 4e-06 | ||
| 1z7b_A | 358 | Crystal Structure Of E.Coli Arna Dehydrogenase (Dec | 4e-06 | ||
| 1z75_A | 358 | Crystal Structure Of Arna Dehydrogenase (decarboxyl | 5e-06 | ||
| 2x6t_A | 357 | Agme Bound To Adp-B-Mannose Length = 357 | 6e-06 | ||
| 3slg_A | 372 | Crystal Structure Of Pbgp3 Protein From Burkholderi | 6e-06 | ||
| 1z73_A | 358 | Crystal Structure Of E. Coli Arna Dehydrogenase (de | 1e-05 | ||
| 1db3_A | 372 | E.Coli Gdp-Mannose 4,6-Dehydratase Length = 372 | 1e-05 | ||
| 1z7e_A | 660 | Crystal Structure Of Full Length Arna Length = 660 | 1e-05 | ||
| 2yy7_A | 312 | Crystal Structure Of Thermolabile L-Threonine Dehyd | 2e-05 | ||
| 4id9_A | 347 | Crystal Structure Of A Short-Chain DehydrogenaseRED | 3e-05 | ||
| 3ay3_A | 267 | Crystal Structure Of Glucuronic Acid Dehydrogeanse | 3e-05 | ||
| 2zkl_A | 369 | Crystal Structure Of Capsular Polysaccharide Assemb | 4e-05 | ||
| 1rpn_A | 335 | Crystal Structure Of Gdp-D-Mannose 4,6-Dehydratase | 6e-05 | ||
| 1rkx_A | 357 | Crystal Structure At 1.8 Angstrom Of Cdp-D-Glucose | 8e-05 | ||
| 3st7_A | 369 | Crystal Structure Of Capsular Polysaccharide Assemb | 2e-04 |
| >pdb|1SB8|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa Udp-N-Acetylglucosamine 4- Epimerase Complexed With Udp-N-Acetylgalactosamine Length = 352 | Back alignment and structure |
|
| >pdb|3RU9|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain Flexibility In Wbgu: A Udp-Galnac 4-Epimerase Length = 351 | Back alignment and structure |
|
| >pdb|3RU7|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain Flexibility In Wbgu: A Udp-Galnac 4-Epimerase Length = 351 | Back alignment and structure |
|
| >pdb|3LU1|A Chain A, Crystal Structure Analysis Of Wbgu: A Udp-Galnac 4-Epimerase Length = 364 | Back alignment and structure |
|
| >pdb|3RUC|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain Flexibility In Wbgu: A Udp-Galnac 4-Epimerase Length = 351 | Back alignment and structure |
|
| >pdb|1EK5|A Chain A, Structure Of Human Udp-Galactose 4-Epimerase In Complex With Nad+ Length = 348 | Back alignment and structure |
|
| >pdb|1HZJ|A Chain A, Human Udp-Galactose 4-Epimerase: Accommodation Of Udp-N- Acetylglucosamine Within The Active Site Length = 348 | Back alignment and structure |
|
| >pdb|1I3K|A Chain A, Molecular Basis For Severe Epimerase-Deficiency Galactosemia: X-Ray Structure Of The Human V94m- Substituted Udp-Galactose 4-Epimerase Length = 348 | Back alignment and structure |
|
| >pdb|3VPS|A Chain A, Structure Of A Novel Nad Dependent-Ndp-Hexosamine 5,6-Dehydratase, Tuna, Involved In Tunicamycin Biosynthesis Length = 321 | Back alignment and structure |
|
| >pdb|1LRK|A Chain A, Crystal Structure Of Escherichia Coli Udp-Galactose 4-Epimerase Mutant Y299c Complexed With Udp-N-Acetylglucosamine Length = 338 | Back alignment and structure |
|
| >pdb|1LRJ|A Chain A, Crystal Structure Of E. Coli Udp-Galactose 4-Epimerase Complexed With Udp-N-Acetylglucosamine Length = 338 | Back alignment and structure |
|
| >pdb|1KVS|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol Length = 338 | Back alignment and structure |
|
| >pdb|1KVQ|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol Length = 338 | Back alignment and structure |
|
| >pdb|1KVT|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol Length = 338 | Back alignment and structure |
|
| >pdb|2UDP|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol Length = 338 | Back alignment and structure |
|
| >pdb|3ICP|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase Length = 312 | Back alignment and structure |
|
| >pdb|1A9Z|A Chain A, Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEXED WITH UDP- Galactose Length = 338 | Back alignment and structure |
|
| >pdb|1KVR|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol Length = 338 | Back alignment and structure |
|
| >pdb|1KVU|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol Length = 338 | Back alignment and structure |
|
| >pdb|3SXP|A Chain A, Crystal Structure Of Helicobacter Pylori Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad, Hp0859) Length = 362 | Back alignment and structure |
|
| >pdb|1A9Y|A Chain A, Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEXED WITH UDP- Glucose Length = 338 | Back alignment and structure |
|
| >pdb|2HUN|A Chain A, Crystal Structure Of Hypothetical Protein Ph0414 From Pyrococcus Horikoshii Ot3 Length = 336 | Back alignment and structure |
|
| >pdb|2P5U|A Chain A, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose 4- Epimerase Complex With Nad Length = 311 | Back alignment and structure |
|
| >pdb|1R6D|A Chain A, Crystal Structure Of Desiv Double Mutant (Dtdp-Glucose 4,6- Dehydratase) From Streptomyces Venezuelae With Nad And Dau Bound Length = 337 | Back alignment and structure |
|
| >pdb|1R66|A Chain A, Crystal Structure Of Desiv (Dtdp-Glucose 4,6-Dehydratase) From Streptomyces Venezuelae With Nad And Tyd Bound Length = 337 | Back alignment and structure |
|
| >pdb|3AW9|A Chain A, Structure Of Udp-Galactose 4-Epimerase Mutant Length = 308 | Back alignment and structure |
|
| >pdb|3EHE|A Chain A, Crystal Structure Of Udp-Glucose 4 Epimerase (Gale-1) From Archaeoglobus Fulgidus Length = 313 | Back alignment and structure |
|
| >pdb|1G1A|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase (Rmlb)from Salmonella Enterica Serovar Typhimurium Length = 361 | Back alignment and structure |
|
| >pdb|4EGB|A Chain A, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose 4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str. Ames In Complex With Nad Length = 346 | Back alignment and structure |
|
| >pdb|1BXK|A Chain A, Dtdp-Glucose 4,6-Dehydratase From E. Coli Length = 355 | Back alignment and structure |
|
| >pdb|2C20|A Chain A, Crystal Structure Of Udp-Glucose 4-Epimerase Length = 330 | Back alignment and structure |
|
| >pdb|1Z45|A Chain A, Crystal Structure Of The Gal10 Fusion Protein Galactose MutarotaseUDP-Galactose 4-Epimerase From Saccharomyces Cerevisiae Complexed With Nad, Udp-Glucose, And Galactose Length = 699 | Back alignment and structure |
|
| >pdb|2C59|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana), With Gdp-Alpha-D-Mannose And Gdp-Beta-L-Galactose Bound In The Active Site. Length = 379 | Back alignment and structure |
|
| >pdb|2B69|A Chain A, Crystal Structure Of Human Udp-Glucoronic Acid Decarboxylase Length = 343 | Back alignment and structure |
|
| >pdb|2C5E|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana), K217a, With Gdp-Alpha-D-Mannose Bound In The Active Site. Length = 379 | Back alignment and structure |
|
| >pdb|2C54|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana), K178r, With Gdp-Beta-L-Gulose And Gdp-4-Keto-Beta-L-Gulose Bound In Active Site. Length = 379 | Back alignment and structure |
|
| >pdb|2C5A|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana), Y174f, With Gdp-Beta-L-Galactose Bound In The Active Site Length = 379 | Back alignment and structure |
|
| >pdb|3ENK|A Chain A, 1.9a Crystal Structure Of Udp-Glucose 4-Epimerase From Burkholderia Pseudomallei Length = 341 | Back alignment and structure |
|
| >pdb|2Q1W|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme Wbmh In Complex With Nad+ Length = 333 | Back alignment and structure |
|
| >pdb|2PK3|A Chain A, Crystal Structure Of A Gdp-4-Keto-6-Deoxy-D-Mannose Reductase Length = 321 | Back alignment and structure |
|
| >pdb|1ORR|A Chain A, Crystal Structure Of Cdp-tyvelose 2-epimerase Complexed With Nad And Cdp Length = 347 | Back alignment and structure |
|
| >pdb|2PZK|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme Wbmg In Complex With Nad Length = 330 | Back alignment and structure |
|
| >pdb|2PZJ|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme Wbmf In Complex With Nad+ Length = 377 | Back alignment and structure |
|
| >pdb|3M2P|A Chain A, The Crystal Structure Of Udp-N-Acetylglucosamine 4-Epimerase From Bacillus Cereus Length = 311 | Back alignment and structure |
|
| >pdb|1KEP|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase (Rmlb) From Streptococcus Suis With Dtdp-Xylose Bound Length = 348 | Back alignment and structure |
|
| >pdb|1GY8|A Chain A, Trypanosoma Brucei Udp-Galactose 4' Epimerase Length = 397 | Back alignment and structure |
|
| >pdb|2Z1M|A Chain A, Crystal Structure Of Gdp-D-Mannose Dehydratase From Aquifex Aeolicus Vf5 Length = 345 | Back alignment and structure |
|
| >pdb|1N7G|A Chain A, Crystal Structure Of The Gdp-mannose 4,6-dehydratase Ternary Complex With Nadph And Gdp-rhamnose. Length = 381 | Back alignment and structure |
|
| >pdb|1WVG|A Chain A, Structure Of Cdp-D-Glucose 4,6-Dehydratase From Salmonella Typhi Length = 359 | Back alignment and structure |
|
| >pdb|2BLL|A Chain A, Apo-Structure Of The C-Terminal Decarboxylase Domain Of Arna Length = 345 | Back alignment and structure |
|
| >pdb|1EQ2|A Chain A, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6- Epimerase Length = 310 | Back alignment and structure |
|
| >pdb|1U9J|A Chain A, Crystal Structure Of E. Coli Arna (Pmri) Decarboxylase Domain Length = 358 | Back alignment and structure |
|
| >pdb|1Z74|A Chain A, Crystal Structure Of E.Coli Arna Dehydrogenase (Decarboxylase) Domain, R619y Mutant Length = 358 | Back alignment and structure |
|
| >pdb|1Z7B|A Chain A, Crystal Structure Of E.Coli Arna Dehydrogenase (Decarboxylase) Domain, R619e Mutant Length = 358 | Back alignment and structure |
|
| >pdb|1Z75|A Chain A, Crystal Structure Of Arna Dehydrogenase (decarboxylase) Domain, R619m Mutant Length = 358 | Back alignment and structure |
|
| >pdb|2X6T|A Chain A, Agme Bound To Adp-B-Mannose Length = 357 | Back alignment and structure |
|
| >pdb|3SLG|A Chain A, Crystal Structure Of Pbgp3 Protein From Burkholderia Pseudomallei Length = 372 | Back alignment and structure |
|
| >pdb|1Z73|A Chain A, Crystal Structure Of E. Coli Arna Dehydrogenase (decarboxylase) Domain, S433a Mutant Length = 358 | Back alignment and structure |
|
| >pdb|1DB3|A Chain A, E.Coli Gdp-Mannose 4,6-Dehydratase Length = 372 | Back alignment and structure |
|
| >pdb|1Z7E|A Chain A, Crystal Structure Of Full Length Arna Length = 660 | Back alignment and structure |
|
| >pdb|2YY7|A Chain A, Crystal Structure Of Thermolabile L-Threonine Dehydrogenase From Flavobacterium Frigidimaris Kuc-1 Length = 312 | Back alignment and structure |
|
| >pdb|4ID9|A Chain A, Crystal Structure Of A Short-Chain DehydrogenaseREDUCTASE SUPERFAMILY Protein From Agrobacterium Tumefaciens (Target Efi-506441) With Bound Nad, Monoclinic Form 1 Length = 347 | Back alignment and structure |
|
| >pdb|3AY3|A Chain A, Crystal Structure Of Glucuronic Acid Dehydrogeanse From Chromohalobacter Salexigens Length = 267 | Back alignment and structure |
|
| >pdb|2ZKL|A Chain A, Crystal Structure Of Capsular Polysaccharide Assembling Protein Capf From Staphylococcus Aureus Length = 369 | Back alignment and structure |
|
| >pdb|1RPN|A Chain A, Crystal Structure Of Gdp-D-Mannose 4,6-Dehydratase In Complexes With Gdp And Nadph Length = 335 | Back alignment and structure |
|
| >pdb|1RKX|A Chain A, Crystal Structure At 1.8 Angstrom Of Cdp-D-Glucose 4,6- Dehydratase From Yersinia Pseudotuberculosis Length = 357 | Back alignment and structure |
|
| >pdb|3ST7|A Chain A, Crystal Structure Of Capsular Polysaccharide Assembling Protein Capf From Staphylococcus Aureus Length = 369 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 469 | |||
| 3ruf_A | 351 | WBGU; rossmann fold, UDP-hexose 4-epimerase, isome | 1e-133 | |
| 1sb8_A | 352 | WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN | 1e-127 | |
| 2q1w_A | 333 | Putative nucleotide sugar epimerase/ dehydratase; | 1e-115 | |
| 3vps_A | 321 | TUNA, NAD-dependent epimerase/dehydratase; tunicam | 1e-108 | |
| 2yy7_A | 312 | L-threonine dehydrogenase; thermolabIle, flavobact | 1e-105 | |
| 3m2p_A | 311 | UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J | 1e-102 | |
| 3sxp_A | 362 | ADP-L-glycero-D-mannoheptose-6-epimerase; rossman | 9e-91 | |
| 3ko8_A | 312 | NAD-dependent epimerase/dehydratase; isomerase, UD | 3e-88 | |
| 3ehe_A | 313 | UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, | 5e-82 | |
| 3ajr_A | 317 | NDP-sugar epimerase; L-threonine dehydrogenase, L- | 2e-71 | |
| 2q1s_A | 377 | Putative nucleotide sugar epimerase/ dehydratase; | 1e-69 | |
| 1eq2_A | 310 | ADP-L-glycero-D-mannoheptose 6-epimerase; N-termin | 2e-68 | |
| 2x6t_A | 357 | ADP-L-glycero-D-manno-heptose-6-epimerase; isomera | 8e-68 | |
| 2p5y_A | 311 | UDP-glucose 4-epimerase; TTHA0591, structural geno | 1e-67 | |
| 2pzm_A | 330 | Putative nucleotide sugar epimerase/ dehydratase; | 7e-62 | |
| 3st7_A | 369 | Capsular polysaccharide synthesis enzyme CAP5F; ro | 8e-61 | |
| 2hrz_A | 342 | AGR_C_4963P, nucleoside-diphosphate-sugar epimeras | 5e-56 | |
| 1i24_A | 404 | Sulfolipid biosynthesis protein SQD1; SDR, short-c | 3e-53 | |
| 2c5a_A | 379 | GDP-mannose-3', 5'-epimerase; short chain dehydrat | 2e-49 | |
| 3ay3_A | 267 | NAD-dependent epimerase/dehydratase; glucuronic ac | 9e-47 | |
| 2b69_A | 343 | UDP-glucuronate decarboxylase 1; UDP-glucoronic ac | 3e-44 | |
| 2bll_A | 345 | Protein YFBG; decarboxylase, short chain dehydroge | 8e-42 | |
| 1udb_A | 338 | Epimerase, UDP-galactose-4-epimerase; isomerase; H | 7e-41 | |
| 3slg_A | 372 | PBGP3 protein; structural genomics, seattle struct | 1e-40 | |
| 3enk_A | 341 | UDP-glucose 4-epimerase; seattle structural genomi | 3e-39 | |
| 3rft_A | 267 | Uronate dehydrogenase; apoenzyme, rossmann fold, N | 7e-39 | |
| 2x4g_A | 342 | Nucleoside-diphosphate-sugar epimerase; isomerase; | 2e-37 | |
| 2c20_A | 330 | UDP-glucose 4-epimerase; carbohydrate metabolism, | 5e-37 | |
| 1ek6_A | 348 | UDP-galactose 4-epimerase; short-chain dehydrogena | 6e-37 | |
| 1z45_A | 699 | GAL10 bifunctional protein; epimerase, mutarotase, | 3e-33 | |
| 1gy8_A | 397 | UDP-galactose 4-epimerase; oxidoreductase; HET: NA | 2e-32 | |
| 1orr_A | 347 | CDP-tyvelose-2-epimerase; rossmann fold, short-cha | 3e-30 | |
| 1rkx_A | 357 | CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; | 7e-29 | |
| 2pk3_A | 321 | GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, shor | 1e-21 | |
| 4egb_A | 346 | DTDP-glucose 4,6-dehydratase; rhamnose pathway, ce | 5e-20 | |
| 3gpi_A | 286 | NAD-dependent epimerase/dehydratase; structural ge | 1e-19 | |
| 1kew_A | 361 | RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fo | 1e-18 | |
| 1z7e_A | 660 | Protein aRNA; rossmann fold, OB-like fold, hydrola | 3e-18 | |
| 2hun_A | 336 | 336AA long hypothetical DTDP-glucose 4,6-dehydrat; | 6e-18 | |
| 1r6d_A | 337 | TDP-glucose-4,6-dehydratase; rossmann fold, short- | 2e-17 | |
| 2v6g_A | 364 | Progesterone 5-beta-reductase; tyrosine-dependent | 3e-17 | |
| 3dhn_A | 227 | NAD-dependent epimerase/dehydratase; reductase, PF | 2e-15 | |
| 1oc2_A | 348 | DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnos | 9e-15 | |
| 4dqv_A | 478 | Probable peptide synthetase NRP (peptide synthase; | 8e-14 | |
| 3ew7_A | 221 | LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend | 6e-11 | |
| 1rpn_A | 335 | GDP-mannose 4,6-dehydratase; short-chain dehydroge | 6e-10 | |
| 2z1m_A | 345 | GDP-D-mannose dehydratase; short-chain dehydrogena | 1e-08 | |
| 3h2s_A | 224 | Putative NADH-flavin reductase; Q03B84, NESG, LCR1 | 2e-08 | |
| 2rh8_A | 338 | Anthocyanidin reductase; flavonoids, rossmann fold | 2e-07 | |
| 2ggs_A | 273 | 273AA long hypothetical DTDP-4-dehydrorhamnose red | 2e-07 | |
| 2ydy_A | 315 | Methionine adenosyltransferase 2 subunit beta; oxi | 4e-07 | |
| 1db3_A | 372 | GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lya | 6e-07 | |
| 1t2a_A | 375 | GDP-mannose 4,6 dehydratase; structural genomics c | 9e-07 | |
| 1qyc_A | 308 | Phenylcoumaran benzylic ether reductase PT1; NADPH | 1e-06 | |
| 3e8x_A | 236 | Putative NAD-dependent epimerase/dehydratase; stru | 1e-06 | |
| 3r6d_A | 221 | NAD-dependent epimerase/dehydratase; structural ge | 1e-06 | |
| 3ius_A | 286 | Uncharacterized conserved protein; APC63810, silic | 2e-06 | |
| 1qyd_A | 313 | Pinoresinol-lariciresinol reductase; NADPH-depende | 2e-06 | |
| 1n7h_A | 381 | GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, | 4e-06 | |
| 1vl0_A | 292 | DTDP-4-dehydrorhamnose reductase, RFBD ortholog; s | 5e-06 | |
| 3qvo_A | 236 | NMRA family protein; structural genomics, PSI-biol | 8e-06 | |
| 2c29_D | 337 | Dihydroflavonol 4-reductase; flavonoids, short deh | 1e-05 | |
| 3c1o_A | 321 | Eugenol synthase; phenylpropene, PIP reductase, sh | 2e-05 | |
| 1hdo_A | 206 | Biliverdin IX beta reductase; foetal metabolism, H | 2e-05 | |
| 2gas_A | 307 | Isoflavone reductase; NADPH-dependent reductase, o | 2e-05 | |
| 2p4h_X | 322 | Vestitone reductase; NADPH-dependent reductase, is | 3e-05 | |
| 1xq6_A | 253 | Unknown protein; structural genomics, protein stru | 5e-05 | |
| 3sc6_A | 287 | DTDP-4-dehydrorhamnose reductase; RFBD, structural | 9e-05 | |
| 1y1p_A | 342 | ARII, aldehyde reductase II; rossmann fold, short | 1e-04 | |
| 3ic5_A | 118 | Putative saccharopine dehydrogenase; structural ge | 3e-04 | |
| 1e6u_A | 321 | GDP-fucose synthetase; epimerase/reductase, SDR, R | 3e-04 | |
| 3dqp_A | 219 | Oxidoreductase YLBE; alpha-beta protein., structur | 4e-04 | |
| 3e48_A | 289 | Putative nucleoside-diphosphate-sugar epimerase; a | 4e-04 | |
| 1xgk_A | 352 | Nitrogen metabolite repression regulator NMRA; ros | 4e-04 | |
| 3nzo_A | 399 | UDP-N-acetylglucosamine 4,6-dehydratase; structura | 6e-04 | |
| 2jl1_A | 287 | Triphenylmethane reductase; oxidoreductase, biorem | 7e-04 | |
| 3oh8_A | 516 | Nucleoside-diphosphate sugar epimerase (SULA FAMI; | 8e-04 |
| >3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A* Length = 351 | Back alignment and structure |
|---|
Score = 386 bits (994), Expect = e-133
Identities = 103/337 (30%), Positives = 163/337 (48%), Gaps = 21/337 (6%)
Query: 117 NGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQ-KLLQKHQVF-I 174
+ T L+TG AGF+GS+ L K V+GLDNF++ + +L + ++ F
Sbjct: 24 SPKTWLITGVAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCF 83
Query: 175 VEGDLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSV 234
+EGD+ D ++ HVLH AA V ++ +P + A+NI GF+N+L K+
Sbjct: 84 IEGDIRDLTTCEQVMK--GVDHVLHQAALGSVPRSIVDPITTNATNITGFLNILHAAKNA 141
Query: 235 NPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIYGLALTG 294
Q S +A+SSS YG + +P E + P S YA TK E A Y YG G
Sbjct: 142 QVQ-SFTYAASSSTYGDHPALPKVEEN-IGNPLSPYAVTKYVNEIYAQVYARTYGFKTIG 199
Query: 295 LRFFTVYGPWGRPDMAY----FFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCV 350
LR+F V+G P+ AY +T +L+G + + D E +RDF YID+V++ +
Sbjct: 200 LRYFNVFGRRQDPNGAYAAVIPKWTAAMLKGDDVYIN---GDGETSRDFCYIDNVIQMNI 256
Query: 351 GATGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKA--KKHVIRM--PRNGDV 406
+ + + +YN+ + L + + LN K I+ R+GDV
Sbjct: 257 LSALAKDSAKD----NIYNVAVGDRTTLNELSGYIYDELNLIHHIDKLSIKYREFRSGDV 312
Query: 407 PYTHANVSLAYKDFGYKPTTDLAAGLRKFVKWYVSYY 443
++ A+V+ A Y+P + GLR + WYV +
Sbjct: 313 RHSQADVTKAIDLLKYRPNIKIREGLRLSMPWYVRFL 349
|
| >1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A* Length = 352 | Back alignment and structure |
|---|
Score = 371 bits (955), Expect = e-127
Identities = 100/334 (29%), Positives = 160/334 (47%), Gaps = 21/334 (6%)
Query: 120 TVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQ--VFIVEG 177
L+TG AGF+GS+ L K V+GLDNF + + +L R + +K ++G
Sbjct: 29 VWLITGVAGFIGSNLLETLLKLDQKVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQG 88
Query: 178 DLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQ 237
D+ + +VLH AA V ++ +P + A+NI GF+N+L + Q
Sbjct: 89 DIRNLDDCNNACA--GVDYVLHQAALGSVPRSINDPITSNATNIDGFLNMLIAARDAKVQ 146
Query: 238 PSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIYGLALTGLRF 297
S +A+SSS YG + +P E +P S YA TK E A ++ YG + GLR+
Sbjct: 147 -SFTYAASSSTYGDHPGLPKVEDT-IGKPLSPYAVTKYVNELYADVFSRCYGFSTIGLRY 204
Query: 298 FTVYGPWGRPDMAY----FFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGAT 353
F V+G P+ AY +T ++QG + + D E +RDF YI++ V+ + A
Sbjct: 205 FNVFGRRQDPNGAYAAVIPKWTSSMIQGDDVYIN---GDGETSRDFCYIENTVQANLLAA 261
Query: 354 GSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRM----PRNGDVPYT 409
+G R +VYN+ + +L L + L + R GDV ++
Sbjct: 262 TAGLDARN----QVYNIAVGGRTSLNQLFFALRDGLAENGVSYHREPVYRDFREGDVRHS 317
Query: 410 HANVSLAYKDFGYKPTTDLAAGLRKFVKWYVSYY 443
A++S A K GY P D++AG+ + WY+ +
Sbjct: 318 LADISKAAKLLGYAPKYDVSAGVALAMPWYIMFL 351
|
| >2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica} Length = 333 | Back alignment and structure |
|---|
Score = 341 bits (876), Expect = e-115
Identities = 79/340 (23%), Positives = 124/340 (36%), Gaps = 31/340 (9%)
Query: 106 QVRHSATPRRPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQK 165
PR + V +TG G +GSH + L +RGD V+G+DNF + LK
Sbjct: 9 HHSSGLVPRGSHMKKVFITGICGQIGSHIAELLLERGDKVVGIDNFATGRREHLK----- 63
Query: 166 LLQKHQVFIVEGDLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFV 225
+ VEG + D L+ +L + V+H AA + +N G
Sbjct: 64 --DHPNLTFVEGSIADHALVNQLIGDLQPDAVVHTAASYKDPDD---WYNDTLTNCVGGS 118
Query: 226 NLLEVCKSVNPQPSIVWASSSSVYGLN-TQVPFSESHRTDQPASLYAATKKAGEEIAHTY 284
N+++ K N V+ ++ YG+ Q P H + S YA +K A E Y
Sbjct: 119 NVVQAAKKNNVG-RFVYFQTALCYGVKPIQQPVRLDHPRNPANSSYAISKSANE----DY 173
Query: 285 NHIYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDD 344
GL R V GP F + + +GK V K + RDF ++ D
Sbjct: 174 LEYSGLDFVTFRLANVVGPRNVSGP-LPIFFQRLSEGKKCFVTKAR------RDFVFVKD 226
Query: 345 VVKGCVGATGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMP-RN 403
+ + V A G Y+ + + V + L + + +
Sbjct: 227 LARATVRAVDGVGH-------GAYHFSSGTDVAIKELYDAVVEAMALPSYPEPEIRELGP 279
Query: 404 GDVPYTHANVSLAYKDFGYKPTTDLAAGLRKFVKWYVSYY 443
D P + S +DFG T L + V ++ Y
Sbjct: 280 DDAPSILLDPSRTIQDFGKIEFTPLKETVAAAVAYFREYG 319
|
| >3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis} Length = 321 | Back alignment and structure |
|---|
Score = 321 bits (825), Expect = e-108
Identities = 88/329 (26%), Positives = 132/329 (40%), Gaps = 32/329 (9%)
Query: 114 RRPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVF 173
R +L+TG AGF+G H + AL G+ V LD+ P + + V
Sbjct: 3 RNTLKHRILITGGAGFIGGHLARALVASGEEVTVLDDLR--VPPMIPPEGTGKFLEKPVL 60
Query: 174 -IVEGDLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCK 232
+ E DL+D + V HLA+ V + + P Y+ N+ +LL +C
Sbjct: 61 ELEERDLSD-------VRL-----VYHLASHKSVPRSFKQPLDYL-DNVDSGRHLLALCT 107
Query: 233 SVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIYGLAL 292
SV +V S+ VYG +P E P S YAA+K E +A +
Sbjct: 108 SVGVP-KVVVGSTCEVYGQADTLPTPEDS-PLSPRSPYAASKVGLEMVAGAHQRASVAPE 165
Query: 293 TG-LRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVG 351
G +RFF VYGP RPD ++L + V D E RDFTYI DVV V
Sbjct: 166 VGIVRFFNVYGPGERPDALVPRLCANLLTRNELPVE---GDGEQRRDFTYITDVVDKLVA 222
Query: 352 ATGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRNGDVPYTHA 411
V N G+ + V ++ IL+ PR ++ A
Sbjct: 223 LANRPLP-------SVVNFGSGQSLSVNDVIRILQATSPAAEVARKQ--PRPNEITEFRA 273
Query: 412 NVSLAYKDFGYKP-TTDLAAGLRKFVKWY 439
+ +L + G + + G+R ++W+
Sbjct: 274 DTALQTRQIGERSGGIGIEEGIRLTLEWW 302
|
| >2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1, oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium frigidimaris} Length = 312 | Back alignment and structure |
|---|
Score = 315 bits (810), Expect = e-105
Identities = 64/326 (19%), Positives = 128/326 (39%), Gaps = 22/326 (6%)
Query: 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGD 178
+L+ GA G +G+ + L+K + G +N + +++ ++ +V +
Sbjct: 3 PKILIIGACGQIGTELTQKLRK----LYGTENVIASD---IRKLNTDVVNSGPFEVV--N 53
Query: 179 LNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQP 238
D + L +V T + +AA +NP N+ ++L + K+ +
Sbjct: 54 ALDFNQIEHLVEVHKITDIYLMAALLSATA-EKNPAFAWDLNMNSLFHVLNLAKAKKIK- 111
Query: 239 SIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIYGLALTGLRFF 298
I W SS +V+G T + + +P+++Y +K+AGE Y++IYG+ + +R+
Sbjct: 112 KIFWPSSIAVFGPTTPKENTPQYTIMEPSTVYGISKQAGERWCEYYHNIYGVDVRSIRYP 171
Query: 299 TVYGP-----WGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGAT 353
+ G D A F K + K + + E Y+DD + +
Sbjct: 172 GLISWSTPPGGGTTDYAVDIFYK-AIADKKYECF---LSSETKMPMMYMDDAIDATINIM 227
Query: 354 GSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRNGDVPYTHANV 413
+ +K YNL S P I +++ + D +
Sbjct: 228 KAPVEKIKIH--SSYNLAAMSFTPTEIANEIKKHIPEFTITYEPDFRQKIADSWPASIDD 285
Query: 414 SLAYKDFGYKPTTDLAAGLRKFVKWY 439
S A +D+ +K T DL + + ++
Sbjct: 286 SQAREDWDWKHTFDLESMTKDMIEHL 311
|
| >3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus} Length = 311 | Back alignment and structure |
|---|
Score = 306 bits (785), Expect = e-102
Identities = 65/321 (20%), Positives = 118/321 (36%), Gaps = 30/321 (9%)
Query: 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGD 178
+ + VTG GF+G + ++K G+ + L + D
Sbjct: 3 LKIAVTGGTGFLGQYVVESIKNDGNTPIILTRSIGNKAINDYE------------YRVSD 50
Query: 179 LNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQP 238
L+ +L DV V+HLAA G + + N NL + C N
Sbjct: 51 YTLEDLINQLNDV---DAVVHLAATRGSQGKISEFHD----NEILTQNLYDACYENNIS- 102
Query: 239 SIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIYGLALTGLRFF 298
+IV+AS+ S Y T +P++E P +Y +K A E I + Y+ GL + LRF
Sbjct: 103 NIVYASTISAYSDETSLPWNEKELPL-PDLMYGVSKLACEHIGNIYSRKKGLCIKNLRFA 161
Query: 299 TVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGATGSGGK 358
+YG + + F + G+ + ++ + R+F Y D K + A
Sbjct: 162 HLYGFNEKNNYMINRFFRQAFHGEQLTLHA---NSVAKREFLYAKDAAKSVIYALKQEKV 218
Query: 359 KRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRNGDVPYTHANVSLAYK 418
+N+G+ + + + + N K V N + ++ + S A +
Sbjct: 219 S------GTFNIGSGDALTNYEVANTINNAFGNKDNLLVKNPNANEGIHSSYMDSSKAKE 272
Query: 419 DFGYKPTTDLAAGLRKFVKWY 439
+ + A + +
Sbjct: 273 LLDFSTDYNFATAVEEIHLLM 293
|
| >3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori} Length = 362 | Back alignment and structure |
|---|
Score = 279 bits (716), Expect = 9e-91
Identities = 89/339 (26%), Positives = 151/339 (44%), Gaps = 34/339 (10%)
Query: 117 NGMTVLVTGAAGFVGSHCSLALKKRGDG--VLGLDNFNSYYDPSLKRARQ----KLLQKH 170
T+L+TG AGFVGS+ + ++ V+ LD F S S R K L
Sbjct: 9 ENQTILITGGAGFVGSNLAFHFQENHPKAKVVVLDKFRSNTLFSNNRPSSLGHFKNLIGF 68
Query: 171 QVFIVEGDLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEV 230
+ ++ D+N+ PL + + + F ++ H AA + M N + + +N F+NLLE+
Sbjct: 69 KGEVIAADINN-PLDLRRLEKLHFDYLFHQAAVSDTT--MLNQELVMKTNYQAFLNLLEI 125
Query: 231 CKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIYGL 290
+S + +++ASS+ VYG NT+ P + P ++Y +K +E +++
Sbjct: 126 ARSKKAK--VIYASSAGVYG-NTKAPNVVGK-NESPENVYGFSKLCMDEFVLSHS--NDN 179
Query: 291 ALTGLRFFTVYGPWGRPDMAY----FFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVV 346
GLR+F VYGP + K + +++ E RDF YI+DV+
Sbjct: 180 VQVGLRYFNVYGPREFYKEKTASMVLQLALGAMAFKEVKLFE---FGEQLRDFVYIEDVI 236
Query: 347 KGCVGA--TGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRNG 404
+ V A G VYN+G + +VSIL+ L K I+ P
Sbjct: 237 QANVKAMKAQKSG---------VYNVGYSQARSYNEIVSILKEHLG-DFKVTYIKNPYAF 286
Query: 405 DVPYTHANVSLAYKDFGYKPTTDLAAGLRKFVKWYVSYY 443
+T A++ D Y P DL +G++ ++ + +
Sbjct: 287 FQKHTQAHIEPTILDLDYTPLYDLESGIKDYLPHIHAIF 325
|
| >3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose 4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis} PDB: 3icp_A* 3aw9_A* Length = 312 | Back alignment and structure |
|---|
Score = 271 bits (695), Expect = 3e-88
Identities = 87/329 (26%), Positives = 138/329 (41%), Gaps = 31/329 (9%)
Query: 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGD 178
M ++VTG AGF+GSH L + G V+ +DN +S + + D
Sbjct: 1 MRIVVTGGAGFIGSHLVDKLVELGYEVVVVDNLSSGRREFVN---------PSAELHVRD 51
Query: 179 LNDAPLLTKL-FDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQ 237
L D + DVV H AA VR + P + N+ N+LE + +
Sbjct: 52 LKDYSWGAGIKGDVV-----FHFAANPEVRLSTTEPIVHFNENVVATFNVLEWARQTGVR 106
Query: 238 PSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIYGLALTGLRF 297
++V+ASSS+VYG +P E P S+Y A K AGE + TY ++G+ +R+
Sbjct: 107 -TVVFASSSTVYGDADVIPTPEEEPYK-PISVYGAAKAAGEVMCATYARLFGVRCLAVRY 164
Query: 298 FTVYGPWGRPDMAYFFFTKDILQGKTIDVYK--TQDDREVARDFTYIDDVVKGCVGATGS 355
V GP R + Y F K ++V TQ + + Y+ D V+ + A
Sbjct: 165 ANVVGPRLRHGVIYDFIMKLRRNPNVLEVLGDGTQ-----RKSYLYVRDAVEATLAAWKK 219
Query: 356 GGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVI-----RMPRNGDVPYTH 410
+ P N+GN V V + I+ +L + + ++ GDV Y
Sbjct: 220 FEEMDAPFL--ALNVGNVDAVRVLDIAQIVAEVLGLRPEIRLVPSTPDGRGWPGDVKYMT 277
Query: 411 ANVSLAYKDFGYKPTTDLAAGLRKFVKWY 439
V+ K G++PT A ++K +
Sbjct: 278 LAVTKLMKLTGWRPTMTSAEAVKKTAEDL 306
|
| >3ehe_A UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, ST genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; HET: NAD; 1.87A {Archaeoglobus fulgidus} Length = 313 | Back alignment and structure |
|---|
Score = 255 bits (653), Expect = 5e-82
Identities = 77/325 (23%), Positives = 130/325 (40%), Gaps = 31/325 (9%)
Query: 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGD 178
++VTG AGF+GSH L + + ++ +DN +S + + +V+ D
Sbjct: 2 SLIVVTGGAGFIGSHVVDKLSESNE-IVVIDNLSSGNEEFVN---------EAARLVKAD 51
Query: 179 LNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQP 238
L + L V H+AA VR +NP +N+ LLE +
Sbjct: 52 LAADDIKDYLKGA---EEVWHIAANPDVRIGAENPDEIYRNNVLATYRLLEAMRKAGVS- 107
Query: 239 SIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIYGLALTGLRFF 298
IV+ S+S+VYG +P E + T P SLY A+K A E + +Y H + + RF
Sbjct: 108 RIVFTSTSTVYGEAKVIPTPEDYPTH-PISLYGASKLACEALIESYCHTFDMQAWIYRFA 166
Query: 299 TVYGPWGRPDMAYFFFTKDILQGKTIDVY--KTQDDREVARDFTYIDDVVKGCVGATGSG 356
V G + Y F K + +++ Q + + YI D V +
Sbjct: 167 NVIGRRSTHGVIYDFIMKLKRNPEELEILGNGEQ-----NKSYIYISDCVDAMLFGLRGD 221
Query: 357 GKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVI--RMPRNGDVPYTHANVS 414
+ + ++N+G+ + V R+ I+ L + GDVP ++
Sbjct: 222 ER------VNIFNIGSEDQIKVKRIAEIVCEELGLSPRFRFTGGDRGWKGDVPVMLLSIE 275
Query: 415 LAYKDFGYKPTTDLAAGLRKFVKWY 439
K G+KP + +R V+
Sbjct: 276 KL-KRLGWKPRYNSEEAVRMAVRDL 299
|
| >3ajr_A NDP-sugar epimerase; L-threonine dehydrogenase, L-3- hydroxynorvaline, oxidoreductase; HET: NAD; 1.77A {Thermoplasma volcanium} PDB: 3a9w_A* 3a4v_A* 3a1n_A* Length = 317 | Back alignment and structure |
|---|
Score = 228 bits (583), Expect = 2e-71
Identities = 56/332 (16%), Positives = 111/332 (33%), Gaps = 27/332 (8%)
Query: 121 VLVTGAAGFVGSHCSLAL-KKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDL 179
+LVTG++G +G+ L +K G + + +K + D+
Sbjct: 2 ILVTGSSGQIGTELVPYLAEKYGKKNVIASDIVQRDTGGIK-------------FITLDV 48
Query: 180 NDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPS 239
++ + + + + HLA + ++P N+ G N+LE K
Sbjct: 49 SNRDEIDRAVEKYSIDAIFHLAGILSAK-GEKDPALAYKVNMNGTYNILEAAKQHRV-EK 106
Query: 240 IVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIYGLALTGLRFFT 299
+V S+ V+G T S +P +++ TK A E + Y +GL + LR+
Sbjct: 107 VVIPSTIGVFGPETPKNKVPSITITRPRTMFGVTKIAAELLGQYYYEKFGLDVRSLRYPG 166
Query: 300 VYGPWGRPDMAYF----FFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGATGS 355
+ P ++ + Y A Y+ D +K V +
Sbjct: 167 IISYKAEPTAGTTDYAVEIFYYAVKREKYKCY---LAPNRALPMMYMPDALKALVDLYEA 223
Query: 356 GGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVI-RMPRNGDVPYTHANVS 414
K YN+ + L S ++ + ++ + + S
Sbjct: 224 DRDKLVLR--NGYNVTAYT-FTPSELYSKIKERIPEFEIEYKEDFRDKIAATWPESLDSS 280
Query: 415 LAYKDFGYKPTTDLAAGLRKFVKWYVSYYGIQ 446
A ++G+ DL + + GI+
Sbjct: 281 EASNEWGFSIEYDLDRTIDDMIDHISEKLGIE 312
|
| >2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A* Length = 377 | Back alignment and structure |
|---|
Score = 225 bits (575), Expect = 1e-69
Identities = 74/360 (20%), Positives = 134/360 (37%), Gaps = 43/360 (11%)
Query: 117 NGMTVLVTGAAGFVGSH-CSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVF-I 174
V+V G AGFVGS+ L+ + V +DN S A + + H
Sbjct: 31 ANTNVMVVGGAGFVGSNLVKRLLELGVNQVHVVDNLLS--------AEKINVPDHPAVRF 82
Query: 175 VEGDLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSV 234
E + D LL L D + +V HLA G + ++ +P + +N + L E K
Sbjct: 83 SETSITDDALLASLQD--EYDYVFHLATYHGNQSSIHDPLADHENNTLTTLKLYERLKHF 140
Query: 235 NPQPSIVWASSSSVYGLNTQVPFSESHRTD-----QPASLYAATKKAGEEIAHTYNHIYG 289
+V++++ T + TD S Y+ +K GE + Y+ +
Sbjct: 141 KRLKKVVYSAAGCSIAEKTFDDAKATEETDIVSLHNNDSPYSMSKIFGEFYSVYYHKQHQ 200
Query: 290 LALTGLRFFTVYGPWGRPDMAYFF-------------FTKDILQGKTIDVYKTQDDREVA 336
L RF VYGP + F L+G + + +
Sbjct: 201 LPTVRARFQNVYGPGEILGAGRWRGTPATVWRNVTPTFIYKALKGMPLPLE---NGGVAT 257
Query: 337 RDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKH 396
RDF +++DV G + G VYN+ + + L + + + +
Sbjct: 258 RDFIFVEDVANGLIACAADGTPG------GVYNIASGKETSIADLATKINEITGNNTE-- 309
Query: 397 VIRMP-RNGDVP-YTHANVSLAYKDFGYKPTTDLAAGLRKFVKWYVSYYGIQPRVKKENG 454
+ R+P R D + A ++ G+ + GLRK ++W + + ++ +++
Sbjct: 310 LDRLPKRPWDNSGKRFGSPEKARRELGFSADVSIDDGLRKTIEWTKANLAVIEQIMRKHD 369
|
| >1eq2_A ADP-L-glycero-D-mannoheptose 6-epimerase; N-terminal domain rossmann fold, C-terminal mixed alpha/beta domain; HET: NAP ADQ; 2.00A {Escherichia coli} SCOP: c.2.1.2 Length = 310 | Back alignment and structure |
|---|
Score = 219 bits (561), Expect = 2e-68
Identities = 63/331 (19%), Positives = 115/331 (34%), Gaps = 38/331 (11%)
Query: 121 VLVTGAAGFVGSHCSLALKKRGDG-VLGLDNFNSYYDPSLKRARQKLLQKHQV--FIVEG 177
++VTG AGF+GS+ AL +G +L +DN + L + ++ +
Sbjct: 2 IIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGT-------KFVNLVDLNIADYMDKE 54
Query: 178 DLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQ 237
D + + F + H A + + +N LL C
Sbjct: 55 DFLIQIMAGEEFG--DVEAIFHEGACSSTTEWDGKY--MMDNNYQYSKELLHYCLEREIP 110
Query: 238 PSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIYGLALTGLRF 297
++ASS++ YG T +P ++Y +K +E + G R+
Sbjct: 111 --FLYASSAATYGGRTSDFIESREYE-KPLNVYGYSKFLFDEYVRQILPEANSQIVGFRY 167
Query: 298 FTVYGPWGRPDMAY----FFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGA- 352
F VYGP + F + G++ +++ RDF Y+ DV +
Sbjct: 168 FNVYGPREGHKGSMASVAFHLNTQLNNGESPKLFE--GSENFKRDFVYVGDVADVNLWFL 225
Query: 353 -TGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMP---RNGDVPY 408
G G ++NLG + K + I P + +
Sbjct: 226 ENGVSG---------IFNLGTGRAESFQAVADATLAYH-KKGQIEYIPFPDKLKGRYQAF 275
Query: 409 THANVSLAYKDFGYKPTTDLAAGLRKFVKWY 439
T A+++ KP +A G+ +++ W
Sbjct: 276 TQADLTNLRAAGYDKPFKTVAEGVTEYMAWL 306
|
| >2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate metabolism, stress response; HET: NAP ADP BMA; 2.36A {Escherichia coli} PDB: 2x86_A* Length = 357 | Back alignment and structure |
|---|
Score = 219 bits (561), Expect = 8e-68
Identities = 73/378 (19%), Positives = 129/378 (34%), Gaps = 46/378 (12%)
Query: 82 HQHSLLSSSFF---SSSFSTGGAEWEKQVRHSATPRRP-----NGMTVLVTGAAGFVGSH 133
H H SS S T A++E+Q S G ++VTG AGF+GS+
Sbjct: 2 HHHHHHSSGLVPRGSGMKETAAAKFERQHMDSPDLGTGGGSGIEGRMIIVTGGAGFIGSN 61
Query: 134 CSLALKKRGDG-VLGLDNFNSYYDPSLKRARQKLLQKHQV--FIVEGDLNDAPLLTKLFD 190
AL +G +L +DN + L + ++ + D + + F
Sbjct: 62 IVKALNDKGITDILVVDNLKDGT-------KFVNLVDLNIADYMDKEDFLIQIMAGEEFG 114
Query: 191 VVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYG 250
+ H A + + +N LL C ++ASS++ YG
Sbjct: 115 --DVEAIFHEGACSSTTEWDGKY--MMDNNYQYSKELLHYCLEREIP--FLYASSAATYG 168
Query: 251 LNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPDMA 310
T +P +++ +K +E + G R+F VYGP +
Sbjct: 169 GRTSDFIESREYE-KPLNVFGYSKFLFDEYVRQILPEANSQIVGFRYFNVYGPREGHKGS 227
Query: 311 Y----FFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGA--TGSGGKKRGPAQ 364
F + G++ +++ RDF Y+ DV + G G
Sbjct: 228 MASVAFHLNTQLNNGESPKLFE--GSENFKRDFVYVGDVADVNLWFLENGVSG------- 278
Query: 365 LRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMP---RNGDVPYTHANVSLAYKDFG 421
++NLG + K + I P + +T A+++
Sbjct: 279 --IFNLGTGRAESFQAVADATLAYH-KKGQIEYIPFPDKLKGRYQAFTQADLTNLRAAGY 335
Query: 422 YKPTTDLAAGLRKFVKWY 439
KP +A G+ +++ W
Sbjct: 336 DKPFKTVAEGVTEYMAWL 353
|
| >2p5y_A UDP-glucose 4-epimerase; TTHA0591, structural genomics, PSI; HET: NAD; 1.92A {Thermus thermophilus HB8} PDB: 2p5u_A* Length = 311 | Back alignment and structure |
|---|
Score = 218 bits (557), Expect = 1e-67
Identities = 92/332 (27%), Positives = 138/332 (41%), Gaps = 36/332 (10%)
Query: 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGD 178
M VLVTG AGF+GSH L RG V LDN + ++ V D
Sbjct: 1 MRVLVTGGAGFIGSHIVEDLLARGLEVAVLDNLATGKRENVP---------KGVPFFRVD 51
Query: 179 LNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQP 238
L D + + F THV H AAQA V+ ++++P N+ G +NLLE C+
Sbjct: 52 LRDKEGVERAFREFRPTHVSHQAAQASVKVSVEDPVLDFEVNLLGGLNLLEACRQYGV-E 110
Query: 239 SIVWASSS-SVYGLN-TQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIYGLALTGLR 296
+V+AS+ ++YG E+ +P S YAA+K A E Y YGL LR
Sbjct: 111 KLVFASTGGAIYGEVPEGERAEETWPP-RPKSPYAASKAAFEHYLSVYGQSYGLKWVSLR 169
Query: 297 FFTVYGPWGRPD-------MAYFFFTKDILQGKTIDVYKTQD--DREVARDFTYIDDVVK 347
+ VYGP P + F + +L+G + +Y + D RD+ Y+ DV +
Sbjct: 170 YGNVYGPRQDPHGEAGVVAI----FAERVLKGLPVTLYARKTPGDEGCVRDYVYVGDVAE 225
Query: 348 GCVGATGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRNGDVP 407
A S +YN+G ++ + KA + PR GD+
Sbjct: 226 AHALALFSLE--------GIYNVGTGEGHTTREVLMAVAEAAG-KAPEVQPAPPRPGDLE 276
Query: 408 YTHANVSLAYKDFGYKPTTDLAAGLRKFVKWY 439
+ + G++P G+R V +
Sbjct: 277 RSVLSPLKL-MAHGWRPKVGFQEGIRLTVDHF 307
|
| >2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A* Length = 330 | Back alignment and structure |
|---|
Score = 203 bits (519), Expect = 7e-62
Identities = 71/334 (21%), Positives = 122/334 (36%), Gaps = 36/334 (10%)
Query: 110 SATPRRPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNF-NSYYDPSLKRARQKLLQ 168
S R + M +L+TG AG +GS+ +G +L +DNF R+ L
Sbjct: 12 SGLVPRGSHMRILITGGAGCLGSNLIEHWLPQGHEILVIDNFATGK--------REVLPP 63
Query: 169 KHQVFIVEGDLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLL 228
+ ++EG + DA LL + FD THV+H AA + A+N+ G +N+
Sbjct: 64 VAGLSVIEGSVTDAGLLERAFDSFKPTHVVHSAAAYKD---PDDWAEDAATNVQGSINVA 120
Query: 229 EVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIY 288
+ ++ ++ YG VP T P + Y +K AGE
Sbjct: 121 KAASKAGV-KRLLNFQTALCYGRPATVPIPIDSPT-APFTSYGISKTAGEAFLMM----S 174
Query: 289 GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGK--TIDVYKTQDDREVARDFTYIDDVV 346
+ + LR V GP F+ + + G+ RDF + D +
Sbjct: 175 DVPVVSLRLANVTGPRLAIGPIPTFYKR-LKAGQKCFCSDT--------VRDFLDMSDFL 225
Query: 347 KGCVGATGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKK-HVIRMPRNGD 405
+ G V+N+ + + ++ + + + + P D
Sbjct: 226 AIADLSLQEGRP------TGVFNVSTGEGHSIKEVFDVVLDYVGATLAEPVPVVAPGADD 279
Query: 406 VPYTHANVSLAYKDFGYKPTTDLAAGLRKFVKWY 439
VP + S +FG+K D + + WY
Sbjct: 280 VPSVVLDPSKTETEFGWKAKVDFKDTITGQLAWY 313
|
| >3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A Length = 369 | Back alignment and structure |
|---|
Score = 202 bits (514), Expect = 8e-61
Identities = 64/349 (18%), Positives = 118/349 (33%), Gaps = 66/349 (18%)
Query: 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGD 178
M +++TGA GFVG + L D H +F V
Sbjct: 1 MNIVITGAKGFVGKNLKADLTSTTD--------------------------HHIFEVHRQ 34
Query: 179 LNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQP 238
+ L + L ++HLA ++ + + N++ ++L++ +P
Sbjct: 35 TKEEELESALLKA---DFIVHLAGVNRP----EHDKEFSLGNVSYLDHVLDILTRNTKKP 87
Query: 239 SIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIYGLALTGLRFF 298
+I+ SSS + Y +K GE++ Y YG + R+
Sbjct: 88 AILL-SSSIQAT---------------QDNPYGESKLQGEQLLREYAEEYGNTVYIYRWP 131
Query: 299 TVYGPWGRPDMAYFF--FTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGATGSG 356
++G W +P+ F I + + I V DR V Y+DD+V A
Sbjct: 132 NLFGKWCKPNYNSVIATFCYKIARNEEIQVN----DRNVELTLNYVDDIVAEIKRAIEGT 187
Query: 357 GKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRNGDVPYTHANVS-- 414
V + N V +G +V +L ++ + + ++ + +S
Sbjct: 188 PTIEN----GVPTVPNVFKVTLGEIVDLLYKFKQSRLDRTLPKLDNLFEKDLYSTYLSYL 243
Query: 415 -LAYKDFGYKPTTDLAAGLRKFVK----WYVSYYGIQPRVKKENGFSTT 458
+ D +F+K VS +P + K N + T
Sbjct: 244 PSTDFSYPLLMNVDDRGSFTEFIKTPDRGQVSVNISKPGITKGNHWHHT 292
|
| >2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; agrobacterium tumefa structural genomics, PSI-2, protein structure initiative; 1.85A {Agrobacterium tumefaciens} Length = 342 | Back alignment and structure |
|---|
Score = 188 bits (480), Expect = 5e-56
Identities = 66/343 (19%), Positives = 111/343 (32%), Gaps = 39/343 (11%)
Query: 117 NGMTVLVTGAAGFVGSHCSLALKKRG-------DGVLGLDNFNSYYDPSLKRARQKLLQK 169
GM + + GAAG VG + L K G + +D F
Sbjct: 13 QGMHIAIIGAAGMVGRKLTQRLVKDGSLGGKPVEKFTLIDVFQPEAPAGFS--------- 63
Query: 170 HQVFIVEGDLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLE 229
V DL+ KL + + HLAA A + N+ G L +
Sbjct: 64 GAVDARAADLSAPGEAEKLVEA-RPDVIFHLAAIVSGE-AELDFDKGYRINLDGTRYLFD 121
Query: 230 VCKSVN----PQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYN 285
+ N +P +V+ SS +V+G P + T P + Y K E + Y+
Sbjct: 122 AIRIANGKDGYKPRVVFTSSIAVFGAPLPYPIPDEFHT-TPLTSYGTQKAICELLLSDYS 180
Query: 286 HIYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQ----GKTIDVYKTQDDREVARDFTY 341
G+R T+ G+P+ A F +IL+ G+ +
Sbjct: 181 RRGFFDGIGIRLPTICIRPGKPNAAASGFFSNILREPLVGQE---AVLPVPESIRHWHAS 237
Query: 342 IDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMP 401
V + +K GP R ++ S VG + L + KA + R P
Sbjct: 238 PRSAVGFLIHGAMIDVEKVGPR--RNLSMPGLS-ATVGEQIEALRKVAGEKAVALIRREP 294
Query: 402 -----RNGDVPYTHANVSLAYKDFGYKPTTDLAAGLRKFVKWY 439
R + A ++ G+ + ++ ++
Sbjct: 295 NEMIMRMCEGWAPGFEAKRA-RELGFTAESSFEEIIQVHIEDE 336
|
| >1i24_A Sulfolipid biosynthesis protein SQD1; SDR, short-chain dehydrogenase/reductase, rossmann fold, BIO protein; HET: NAD UPG; 1.20A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1i2c_A* 1i2b_A* 1qrr_A* Length = 404 | Back alignment and structure |
|---|
Score = 183 bits (465), Expect = 3e-53
Identities = 74/377 (19%), Positives = 121/377 (32%), Gaps = 54/377 (14%)
Query: 114 RRPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNF--------------NSYYDPSL 159
+G V+V G G+ G +L L K+ V +DN
Sbjct: 7 HHHHGSRVMVIGGDGYCGWATALHLSKKNYEVCIVDNLVRRLFDHQLGLESLTPIASIHD 66
Query: 160 KRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQS---Y 216
+ +R K L + + GD+ D L + F V+H Q Y+M +
Sbjct: 67 RISRWKALTGKSIELYVGDICDFEFLAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVYT 126
Query: 217 VASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYG------LNTQVPFSESHRTD------ 264
+N+ G +N+L K + +V + YG + + + RTD
Sbjct: 127 QHNNVIGTLNVLFAIKEFGEECHLVKLGTMGEYGTPNIDIEEGYITITHNGRTDTLPYPK 186
Query: 265 QPASLYAATKKAGEEIAHTYNHIYGLALTGLRFFTVYGPW-----------GRPDMAYFF 313
Q +S Y +K +G+ T L VYG R D F
Sbjct: 187 QASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVKTDETEMHEELRNRLDYDAVF 246
Query: 314 ------FTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGATGSGGKKRGPAQLRV 367
F G + VY R + I D V+ A + K + RV
Sbjct: 247 GTALNRFCVQAAVGHPLTVYGKGGQT---RGYLDIRDTVQCVEIAIANPAK---AGEFRV 300
Query: 368 YNLGN--TSPVPVGRLVSILENLLNTKAKKHVIRMPRNGDVPYTHANVSLAYKDFGYKPT 425
+N S + LV+ + L KK + PR + + + G +P
Sbjct: 301 FNQFTEQFSVNELASLVTKAGSKLGLDVKKMTVPNPRVEAEEHYYNAKHTKLMELGLEPH 360
Query: 426 TDLAAGLRKFVKWYVSY 442
+ L + + V +
Sbjct: 361 YLSDSLLDSLLNFAVQF 377
|
| >2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A* Length = 379 | Back alignment and structure |
|---|
Score = 172 bits (438), Expect = 2e-49
Identities = 79/357 (22%), Positives = 135/357 (37%), Gaps = 38/357 (10%)
Query: 117 NGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVE 176
+ + +TGA GF+ SH + LK G V+ D + + + F +
Sbjct: 28 ENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMTEDMFCDE--------FHL- 78
Query: 177 GDLNDAPLLTKLFDVVPFTHVLHLAAQA-GVRYAMQNPQSYVASNIAGFVNLLEVCKSVN 235
DL K+ + HV +LAA G+ + N + +N N++E +
Sbjct: 79 VDLRVMENCLKVTE--GVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARING 136
Query: 236 PQPSIVWASSSSVYGLNTQVPFSESHR------TDQPASLYAATKKAGEEIAHTYNHIYG 289
+ +ASS+ +Y Q+ + +P + K A EE+ YN +G
Sbjct: 137 IK-RFFYASSACIYPEFKQLETTNVSLKESDAWPAEPQDAFGLEKLATEELCKHYNKDFG 195
Query: 290 LALTGLRFFTVYGPWGRPDMAYF-----FFTKDILQGKTIDVYKTQDDREVARDFTYIDD 344
+ RF +YGP+G F K +++ D R FT+ID+
Sbjct: 196 IECRIGRFHNIYGPFGTWKGGREKAPAAFCRKAQTSTDRFEMWG---DGLQTRSFTFIDE 252
Query: 345 VVKGCVGATGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRNG 404
V+G + T S R P N+G+ V + + ++ + K H I P
Sbjct: 253 CVEGVLRLTKSDF--REP-----VNIGSDEMVSMNEMAEMVLSFEEKKLPIHHIPGP--E 303
Query: 405 DVPYTHANVSLAYKDFGYKPTTDLAAGLRKFVKWYVSYYGIQPRVKKENGFSTTTST 461
V +++ +L + G+ P L GLR W I+ K + S S+
Sbjct: 304 GVRGRNSDNNLIKEKLGWAPNMRLKEGLRITYFWIKEQ--IEKEKAKGSDVSLYGSS 358
|
| >3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse, oxidoreductase; 2.10A {Chromohalobacter salexigens} Length = 267 | Back alignment and structure |
|---|
Score = 162 bits (411), Expect = 9e-47
Identities = 48/193 (24%), Positives = 77/193 (39%), Gaps = 21/193 (10%)
Query: 120 TVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDL 179
+LVTGAAG VGS L V D + + + IV DL
Sbjct: 4 RLLVTGAAGGVGSAIRPHLGTLAHEVRLSDIVDLGAAEAHEE------------IVACDL 51
Query: 180 NDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNP-QSYVASNIAGFVNLLEVCKSVNPQP 238
DA + L ++HL + ++ P + +NI G NL E +++ P
Sbjct: 52 ADAQAVHDLVK--DCDGIIHLGGVS-----VERPWNDILQANIIGAYNLYEAARNLGK-P 103
Query: 239 SIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIYGLALTGLRFF 298
IV+ASS+ G + ++ +P SLY +K GE++A Y H + + +R
Sbjct: 104 RIVFASSNHTIGYYPRTTRIDTEVPRRPDSLYGLSKCFGEDLASLYYHKFDIETLNIRIG 163
Query: 299 TVYGPWGRPDMAY 311
+ + M
Sbjct: 164 SCFPKPKDARMMA 176
|
| >2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, STRU genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP: c.2.1.2 PDB: 4ef7_A* Length = 343 | Back alignment and structure |
|---|
Score = 157 bits (399), Expect = 3e-44
Identities = 83/332 (25%), Positives = 137/332 (41%), Gaps = 32/332 (9%)
Query: 115 RPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFI 174
+ +L+TG AGFVGSH + L G V +DNF + KR + + +
Sbjct: 24 EKDRKRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFT----GRKRNVEHWIGHENFEL 79
Query: 175 VEGDLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSV 234
+ D+ + PL + + HLA+ A M NP + +N G +N+L + K V
Sbjct: 80 INHDVVE-PLY------IEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRV 132
Query: 235 NPQPSIVWASSSSVYGLNTQVPFSESHR----TDQPASLYAATKKAGEEIAHTYNHIYGL 290
+ ++ AS+S VYG P SE + P + Y K+ E + + Y G+
Sbjct: 133 GAR--LLLASTSEVYGDPEVHPQSEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGV 190
Query: 291 ALTGLRFFTVYGPWGRPDMAYFF--FTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKG 348
+ R F +GP + F LQG+ + VY R F Y+ D+V G
Sbjct: 191 EVRVARIFNTFGPRMHMNDGRVVSNFILQALQGEPLTVY---GSGSQTRAFQYVSDLVNG 247
Query: 349 CVGATGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRNGDVPY 408
V S P NLGN + +++NL+ + ++ + + D P
Sbjct: 248 LVALMNSN--VSSP-----VNLGNPEEHTILEFAQLIKNLVGSGSE--IQFLSEAQDDPQ 298
Query: 409 T-HANVSLAYKDFGYKPTTDLAAGLRKFVKWY 439
++ A G++P L GL K + ++
Sbjct: 299 KRKPDIKKAKLMLGWEPVVPLEEGLNKAIHYF 330
|
| >2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N biosynthes methyltransferase, transferase; 2.3A {Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A 1z75_A 1z7b_A 1z74_A Length = 345 | Back alignment and structure |
|---|
Score = 151 bits (382), Expect = 8e-42
Identities = 69/362 (19%), Positives = 127/362 (35%), Gaps = 51/362 (14%)
Query: 119 MTVLVTGAAGFVGSHCSLALKKRGDG-VLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEG 177
M VL+ G GF+G+H + L + V GLD A + L VEG
Sbjct: 1 MRVLILGVNGFIGNHLTERLLREDHYEVYGLDIG--------SDAISRFLNHPHFHFVEG 52
Query: 178 DLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQ 237
D++ + V VL L A A +NP + + ++ C +
Sbjct: 53 DISI-HSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKR 111
Query: 238 PSIVWASSSSVYGLNTQVPFSESHR------TDQPASLYAATKKAGEEIAHTYNHIYGLA 291
I++ S+S VYG+ + F E H ++P +Y+ +K+ + + Y GL
Sbjct: 112 --IIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQ 169
Query: 292 LTGLRFFTVYGPWGRPDMAYFF----------FTKDILQGKTIDVYKTQDDREVARDFTY 341
T R F GP R D ++++G I + D + R FT
Sbjct: 170 FTLFRPFNWMGP--RLDNLNAARIGSSRAITQLILNLVEGSPIKLI---DGGKQKRCFTD 224
Query: 342 IDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTSP-VPVGRLVSILENLLNTKAK-KHVIR 399
I D ++ + G + + N+GN + L +L H
Sbjct: 225 IRDGIEALYRIIENAGNRCDG---EIINIGNPENEASIEELGEMLLASFEKHPLRHHFPP 281
Query: 400 MPRNGDVPYTHA-------------NVSLAYKDFGYKPTTDLAAGLRKFVKWYVSYYGIQ 446
V + ++ A++ ++P D+ + + + +++ +
Sbjct: 282 FAGFRVVESSSYYGKGYQDVEHRKPSIRNAHRCLDWEPKIDMQETIDETLDFFLRTVDLT 341
Query: 447 PR 448
+
Sbjct: 342 DK 343
|
| >1udb_A Epimerase, UDP-galactose-4-epimerase; isomerase; HET: NAD UFG; 1.65A {Escherichia coli} SCOP: c.2.1.2 PDB: 1lrj_A* 1nai_A* 1uda_A* 1nah_A* 1xel_A* 1kvq_A* 1kvs_A* 1udc_A* 2udp_A* 1a9z_A* 1kvt_A* 1kvr_A* 1lrk_A* 1lrl_A* 1kvu_A* 1a9y_A* Length = 338 | Back alignment and structure |
|---|
Score = 147 bits (375), Expect = 7e-41
Identities = 101/349 (28%), Positives = 161/349 (46%), Gaps = 50/349 (14%)
Query: 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNF-NSYYDPSLKRARQKLLQKHQVFIVEG 177
M VLVTG +G++GSH + L + G V+ LDN NS L ++L KH F+ EG
Sbjct: 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRS-VLPVI-ERLGGKHPTFV-EG 57
Query: 178 DLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQ 237
D+ + L+T++ V+H A V ++Q P Y +N+ G + L+ ++ N +
Sbjct: 58 DIRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVK 117
Query: 238 PSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAH-TYNHIYGLALTGLR 296
+ +++SS++VYG N ++P+ ES T P S Y +K E+I ++ LR
Sbjct: 118 -NFIFSSSATVYGDNPKIPYVESFPTGTPQSPYGKSKLMVEQILTDLQKAQPDWSIALLR 176
Query: 297 FFTVYG----------PWGRPD--MAYFFFTKDILQ---GK----TI--DVYKTQDDREV 335
+F G P G P+ M Y I Q G+ I + Y T+D V
Sbjct: 177 YFNPVGAHPSGDMGEDPQGIPNNLMPY------IAQVAVGRRDSLAIFGNDYPTEDGTGV 230
Query: 336 ARDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNT--KA 393
RD+ ++ D+ G V A K G + +YNLG G S+L+ ++N KA
Sbjct: 231 -RDYIHVMDLADGHVVAMEKLANKPG---VHIYNLGA------GVGNSVLD-VVNAFSKA 279
Query: 394 --KK--HVIRMPRNGDVPYTHANVSLAYKDFGYKPTTDLAAGLRKFVKW 438
K + R GD+P A+ S A ++ ++ T L + W
Sbjct: 280 CGKPVNYHFAPRREGDLPAYWADASKADRELNWRVTRTLDEMAQDTWHW 328
|
| >3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei} Length = 372 | Back alignment and structure |
|---|
Score = 148 bits (375), Expect = 1e-40
Identities = 71/379 (18%), Positives = 129/379 (34%), Gaps = 52/379 (13%)
Query: 108 RHSATPRRPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLL 167
+ P VL+ G GF+G H S + + D + + + R L
Sbjct: 14 AQTQGPGSMKAKKVLILGVNGFIGHHLSKRILETTDWEVFGMDMQT--------DRLGDL 65
Query: 168 QKHQVF-IVEGDLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVN 226
KH+ EGD+ + V +L L A A ++ P + +
Sbjct: 66 VKHERMHFFEGDITINKEWVEYH-VKKCDVILPLVAIATPATYVKQPLRVFELDFEANLP 124
Query: 227 LLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESH------RTDQPASLYAATKKAGEEI 280
++ +V+ S+S VYG+ F ++P +YA +K+ + +
Sbjct: 125 IVRSAVKYGKH--LVFPSTSEVYGMCADEQFDPDASALTYGPINKPRWIYACSKQLMDRV 182
Query: 281 AHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFF----------FTKDILQGKTIDVYKTQ 330
Y + GL T R F GP D Y F I++G+ I +
Sbjct: 183 IWGY-GMEGLNFTLFRPFNWIGP--GLDSIYTPKEGSSRVVTQFLGHIVRGENISLV--- 236
Query: 331 DDREVARDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGN-TSPVPVGRLVSILENLL 389
D R FTY+DD + + + G A ++YN+GN + V L + + L
Sbjct: 237 DGGSQKRAFTYVDDGISALMKIIEN---SNGVATGKIYNIGNPNNNFSVRELANKMLELA 293
Query: 390 NTKAKKHVIR-----MPRNGDVPYTHA---------NVSLAYKDFGYKPTTDLAAGLRKF 435
+ + Y + + ++ G+ P LR+
Sbjct: 294 AEFPEYADSAKRVKLVETTSGAYYGNGYQDVQNRVPKIENTMQELGWAPQFTFDDALRQI 353
Query: 436 VKWYVSYYGIQPRVKKENG 454
+ Y + + +++G
Sbjct: 354 FEAYRGHVADARALVEQHG 372
|
| >3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} Length = 341 | Back alignment and structure |
|---|
Score = 143 bits (364), Expect = 3e-39
Identities = 95/349 (27%), Positives = 153/349 (43%), Gaps = 51/349 (14%)
Query: 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNF-NSYYDPSLKRARQKLLQKHQVFIVEG 177
T+LVTG AG++GSH ++ L G V+ DN NS + ++ R +K+ K F E
Sbjct: 6 GTILVTGGAGYIGSHTAVELLAHGYDVVIADNLVNSKRE-AIARI-EKITGKTPAFH-ET 62
Query: 178 DLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQ 237
D++D L ++FD P T +H AA V ++ P Y +N+ ++LL V + +
Sbjct: 63 DVSDERALARIFDAHPITAAIHFAALKAVGESVAKPIEYYRNNLDSLLSLLRVMRERAVK 122
Query: 238 PSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAH-TYNHIYGLALTGLR 296
IV++SS++VYG+ + P E+ + Y TK E+I + LR
Sbjct: 123 -RIVFSSSATVYGVPERSPIDETFPL-SATNPYGQTKLMAEQILRDVEAADPSWRVATLR 180
Query: 297 FFTVYG----------PWGRPD--MAYFFFTKDILQ---GK----TI--DVYKTQDDREV 335
+F G P G P+ M Y + Q GK + Y T D V
Sbjct: 181 YFNPVGAHESGLIGEDPAGIPNNLMPY------VAQVAVGKLEKLRVFGSDYPTPDGTGV 234
Query: 336 ARDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNT---- 391
RD+ ++ D+ +G + A + ++ NLG GR S+LE ++
Sbjct: 235 -RDYIHVVDLARGHIAALDALERRDA---SLTVNLGT------GRGYSVLE-VVRAFEKA 283
Query: 392 --KAKKHVIRMPRNGDVPYTHANVSLAYKDFGYKPTTDLAAGLRKFVKW 438
+A + + R GDV +AN + A + G+K DL +W
Sbjct: 284 SGRAVPYELVARRPGDVAECYANPAAAAETIGWKAERDLERMCADHWRW 332
|
| >3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A* Length = 267 | Back alignment and structure |
|---|
Score = 140 bits (356), Expect = 7e-39
Identities = 47/196 (23%), Positives = 72/196 (36%), Gaps = 21/196 (10%)
Query: 120 TVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDL 179
+LVTGAAG +G L + + D S DP+ V+ DL
Sbjct: 5 RLLVTGAAGQLGRVMRERLAPMAEILRLADL--SPLDPAGPNEE----------CVQCDL 52
Query: 180 NDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPS 239
DA + + ++HL + + + + NI G NL E ++ QP
Sbjct: 53 ADANAVNAMVAGC--DGIVHLGGISVEK----PFEQILQGNIIGLYNLYEAARAHG-QPR 105
Query: 240 IVWASSSSVYGLNTQ-VPFSESHRTDQPASLYAATKKAGEEIAHTYNHIYGLALTGLRFF 298
IV+ASS+ G Q +P LY +K GE +A Y +G +R
Sbjct: 106 IVFASSNHTIGYYPQTERLGPDVPA-RPDGLYGVSKCFGENLARMYFDKFGQETALVRIG 164
Query: 299 TVYGPWGRPDMAYFFF 314
+ M +F
Sbjct: 165 SCTPEPNNYRMLSTWF 180
|
| >2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa} Length = 342 | Back alignment and structure |
|---|
Score = 138 bits (351), Expect = 2e-37
Identities = 53/359 (14%), Positives = 98/359 (27%), Gaps = 58/359 (16%)
Query: 112 TPRRPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQ 171
R + V GA G +G H + A++ G ++ + ++ + L +
Sbjct: 7 LSRPGAHVKYAVLGATGLLGHHAARAIRAAGHDLVLIH---------RPSSQIQRLAYLE 57
Query: 172 VFIVEGDLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVC 231
++ D L + + V+ A + Q VAS + C
Sbjct: 58 PECRVAEMLDHAGLERALRGL--DGVIFSAGY--YPSRPRRWQEEVASALGQTNPFYAAC 113
Query: 232 KSVNPQPSIVWASSSSVYGLNT-QVPFSESHRTD---QPASLYAATKKAGEEIAHTYNHI 287
I++ S+ + +P E D S Y K A +E A
Sbjct: 114 LQARVPR-ILYVGSAYAMPRHPQGLPGHEGLFYDSLPSGKSSYVLCKWALDEQAREQAR- 171
Query: 288 YGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVK 347
GL + V G I G+ R+ + +
Sbjct: 172 NGLPVVIGIPGMVLGELDIGPTTGRVI-TAIGNGEMTHYVAG------QRNVIDAAEAGR 224
Query: 348 GCVGATGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHV---------- 397
G + A G + G Y L + + L + LL A + +
Sbjct: 225 GLLMALERG--RIG----ERYLLTGH-NLEMADLTRRIAELLGQPAPQPMSMAMARALAT 277
Query: 398 ----IRMPRNGDVPYTHANVSLAY-----------KDFGYKPTTDLAAGLRKFVKWYVS 441
+ + ++ G+ TT L L + + W+
Sbjct: 278 LGRLRYRVSGQLPLLDETAIEVMAGGQFLDGRKAREELGFFSTTALDDTLLRAIDWFRD 336
|
| >2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose metabolism, isomerase, NAD, spine; HET: NAD; 2.7A {Bacillus anthracis} Length = 330 | Back alignment and structure |
|---|
Score = 137 bits (348), Expect = 5e-37
Identities = 80/337 (23%), Positives = 134/337 (39%), Gaps = 55/337 (16%)
Query: 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGD 178
++L+ G AG++GSH L G V+ +DN L+ + + + F GD
Sbjct: 2 NSILICGGAGYIGSHAVKKLVDEGLSVVVVDN--------LQTGHEDAITEGAKF-YNGD 52
Query: 179 LNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQP 238
L D L +F V+H AA + V +M+ P Y +N+ G + LLEV
Sbjct: 53 LRDKAFLRDVFTQENIEAVMHFAADSLVGVSMEKPLQYYNNNVYGALCLLEVMDEFK-VD 111
Query: 239 SIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIYGLALTGLRFF 298
+++S+++ YG +E T P + Y TK A E++ H Y+ L R+F
Sbjct: 112 KFIFSSTAATYGEVDVDLITEETMT-NPTNTYGETKLAIEKMLHWYSQASNLRYKIFRYF 170
Query: 299 TVYG--PWGR----PD-----MAYFFFTKDILQ---GK--TIDV----YKTQDDREVARD 338
V G P G + +LQ G+ I + Y T D + RD
Sbjct: 171 NVAGATPNGIIGEDHRPETHLIPL------VLQVALGQREKIMMFGDDYNTPDGTCI-RD 223
Query: 339 FTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAK---- 394
+ +++D+V + + YNLGN G S+ E +++ +
Sbjct: 224 YIHVEDLVAAHFLGL---KDLQNGGESDFYNLGN------GNGFSVKE-IVDAVREVTNH 273
Query: 395 --KHVIRMPRNGDVPYTHANVSLAYKDFGYKPT-TDL 428
+ R GD A+ A + G+ P ++
Sbjct: 274 EIPAEVAPRRAGDPARLVASSQKAKEKLGWDPRYVNV 310
|
| >1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A* 1i3n_A* Length = 348 | Back alignment and structure |
|---|
Score = 137 bits (348), Expect = 6e-37
Identities = 103/355 (29%), Positives = 160/355 (45%), Gaps = 54/355 (15%)
Query: 118 GMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNF-NSYYDP-----SLKRARQKLLQKHQ 171
VLVTG AG++GSH L L + G + +DNF N++ SL+R Q+L +
Sbjct: 2 AEKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRV-QELTGRSV 60
Query: 172 VFIVEGDLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVC 231
F E D+ D L +LF F V+H A V ++Q P Y N+ G + LLE+
Sbjct: 61 EFE-EMDILDQGALQRLFKKYSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIM 119
Query: 232 KSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAH-TYNHIYGL 290
K+ + ++V++SS++VYG +P E+H T + Y +K EE+
Sbjct: 120 KAHGVK-NLVFSSSATVYGNPQYLPLDEAHPTGGCTNPYGKSKFFIEEMIRDLCQADKTW 178
Query: 291 ALTGLRFFTVYG----------PWGRPD--MAYFFFTKDILQ---GK----TI--DVYKT 329
LR+F G P G P+ M Y + Q G+ + + Y T
Sbjct: 179 NAVLLRYFNPTGAHASGCIGEDPQGIPNNLMPY------VSQVAIGRREALNVFGNDYDT 232
Query: 330 QDDREVARDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLL 389
+D V RD+ ++ D+ KG + A ++ G R+YNLG G S+L+ ++
Sbjct: 233 EDGTGV-RDYIHVVDLAKGHIAALRKLKEQCG---CRIYNLGT------GTGYSVLQ-MV 281
Query: 390 NT--KA--KK--HVIRMPRNGDVPYTHANVSLAYKDFGYKPTTDLAAGLRKFVKW 438
KA KK + + R GDV +AN SLA ++ G+ L +W
Sbjct: 282 QAMEKASGKKIPYKVVARREGDVAACYANPSLAQEELGWTAALGLDRMCEDLWRW 336
|
| >1z45_A GAL10 bifunctional protein; epimerase, mutarotase, metabolism, isomerase; HET: GAL NAD GUD; 1.85A {Saccharomyces cerevisiae} SCOP: b.30.5.4 c.2.1.2 Length = 699 | Back alignment and structure |
|---|
Score = 132 bits (333), Expect = 3e-33
Identities = 96/370 (25%), Positives = 150/370 (40%), Gaps = 64/370 (17%)
Query: 109 HSATPRRPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNF-NSYYDPSLKRARQKLL 167
+ VLVTG AG++GSH + L + G + DN NS YD S+ R + L
Sbjct: 2 TAQLQSESTSKIVLVTGGAGYIGSHTVVELIENGYDCVVADNLSNSTYD-SVARL-EVLT 59
Query: 168 QKHQVFIVEGDLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNL 227
+ H F E DL D L K+F V+H A V + Q P Y +NI G V L
Sbjct: 60 KHHIPFY-EVDLCDRKGLEKVFKEYKIDSVIHFAGLKAVGESTQIPLRYYHNNILGTVVL 118
Query: 228 LEVCKSVNPQPSIVWASSSSVYGLNT----QVPFSESHRTDQPASLYAATKKAGEEI--- 280
LE+ + N V++SS++VYG T +P E P + Y TK A E I
Sbjct: 119 LELMQQYNV-SKFVFSSSATVYGDATRFPNMIPIPEECPL-GPTNPYGHTKYAIENILND 176
Query: 281 -AHTYNHIYGLALTGLRFFTVYG----------PWGRPD--MAYFFFTKDILQ---GK-- 322
++ + A+ LR+F G P G P+ + Y + Q G+
Sbjct: 177 LYNSDKKSWKFAI--LRYFNPIGAHPSGLIGEDPLGIPNNLLPY------MAQVAVGRRE 228
Query: 323 --TI--DVYKTQDDREVARDFTYIDDVVKGCVGA----TGSGGKKRGPAQLRVYNLGNTS 374
I D Y ++D + RD+ ++ D+ KG + A + R +NLG+
Sbjct: 229 KLYIFGDDYDSRDGTPI-RDYIHVVDLAKGHIAALQYLEAYNENEGL---CREWNLGS-- 282
Query: 375 PVPVGRLVSILENLLNT------KAKKHVIRMPRNGDVPYTHANVSLAYKDFGYKPTTDL 428
G+ ++ E + + + + R GDV A A ++ ++ +
Sbjct: 283 ----GKGSTVFE-VYHAFCKASGIDLPYKVTGRRAGDVLNLTAKPDRAKRELKWQTELQV 337
Query: 429 AAGLRKFVKW 438
+ KW
Sbjct: 338 EDSCKDLWKW 347
|
| >1gy8_A UDP-galactose 4-epimerase; oxidoreductase; HET: NAD UDP; 2.0A {Trypanosoma brucei} SCOP: c.2.1.2 PDB: 2cnb_A* Length = 397 | Back alignment and structure |
|---|
Score = 126 bits (319), Expect = 2e-32
Identities = 77/370 (20%), Positives = 129/370 (34%), Gaps = 71/370 (19%)
Query: 117 NGMTVLVTGAAGFVGSHCSLAL-KKRGDGVLGLDNF-NSYYDPSLKRARQKLLQKHQVFI 174
+ M VLV G AG++GSH AL + V+ +D+ ++ R+ + +K Q
Sbjct: 1 SHMRVLVCGGAGYIGSHFVRALLRDTNHSVVIVDSLVGTHGKSDHVETRENVARKLQQSD 60
Query: 175 -------------VEGDLNDAPLLTKLF-DVVPFTHVLHLAAQAGVRYAMQNPQSYVASN 220
GD+ + L +F P V+H+ A V ++++P Y +N
Sbjct: 61 GPKPPWADRYAALEVGDVRNEDFLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKYYDNN 120
Query: 221 IAGFVNLLEVCKSVNPQPSIVWASSSSVYG-------LNTQVPFSESHRTDQPASLYAAT 273
+ G + LL+ I+++SS++++G P + + P S Y +
Sbjct: 121 VVGILRLLQAMLLHKCD-KIIFSSSAAIFGNPTMGSVSTNAEPIDINAKK-SPESPYGES 178
Query: 274 KKAGEEIAHTYNHIYGLALTGLRFFTVYG--PWGR----PD----------MAY------ 311
K E + YG+ LR+F G G
Sbjct: 179 KLIAERMIRDCAEAYGIKGICLRYFNACGAHEDGDIGEHYQGSTHLIPIILGRVMSDIAP 238
Query: 312 ---FFFTKDILQGKTIDV----YKTQDDREVARDFTYIDDVVKGCVGA---TGSGGKKRG 361
+D K + + Y T D V RD+ ++ D+ + A G
Sbjct: 239 DQRLTIHEDASTDKRMPIFGTDYPTPDGTCV-RDYVHVCDLASAHILALDYVEKLGPNDK 297
Query: 362 PAQLRVYNLGNTSPVPVGRLVSILENLLNTKAK------KHVIRMPRNGDVPYTHANVSL 415
V+NLG R S+ E ++ K R GD Y A
Sbjct: 298 SKYFSVFNLGT------SRGYSVRE-VIEVARKTTGHPIPVRECGRREGDPAYLVAASDK 350
Query: 416 AYKDFGYKPT 425
A + G+KP
Sbjct: 351 AREVLGWKPK 360
|
| >1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A {Salmonella typhi} SCOP: c.2.1.2 Length = 347 | Back alignment and structure |
|---|
Score = 119 bits (301), Expect = 3e-30
Identities = 72/350 (20%), Positives = 131/350 (37%), Gaps = 44/350 (12%)
Query: 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYY--DPSLKRARQKLLQKHQVFIVE 176
+L+TG GF+GS+ + +G ++ DN S +L L V
Sbjct: 2 AKLLITGGCGFLGSNLASFALSQGIDLIVFDNL-SRKGATDNLH----WLSSLGNFEFVH 56
Query: 177 GDLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNP 236
GD+ + +T+L HLA Q + ++ NP N+ G +NLLE + N
Sbjct: 57 GDIRNKNDVTRLITKYMPDSCFHLAGQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQYNS 116
Query: 237 QPSIVWASSSSVYG----------------LNTQVPFSESHRTDQPASLYAATKKAGEEI 280
+I+++S++ VYG ++ + ES + D S Y +K A ++
Sbjct: 117 NCNIIYSSTNKVYGDLEQYKYNETETRYTCVDKPNGYDESTQLD-FHSPYGCSKGAADQY 175
Query: 281 AHTYNHIYGLALTGLRFFTVYGPWGRPD--------MAYFFFTKDILQGKTIDVYKTQDD 332
Y I+GL R ++YG K + +
Sbjct: 176 MLDYARIFGLNTVVFRHSSMYGGRQFATYDQGWVGWFCQKAVEIKNGINKPFTISG--NG 233
Query: 333 REVARDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLG--NTSPVPVGRLVSILENLLN 390
++V RD + +D++ A + K RG +N+G + + + L +LE+ N
Sbjct: 234 KQV-RDVLHAEDMISLYFTALANVSKIRG----NAFNIGGTIVNSLSLLELFKLLEDYCN 288
Query: 391 TKAK-KHVIRMPRNGDVPYTHANVSLAYKDFGYKPTTDLAAGLRKFVKWY 439
+ ++ R D A++ + P G++K W
Sbjct: 289 IDMRFTNL--PVRESDQRVFVADIKKITNAIDWSPKVSAKDGVQKMYDWT 336
|
| >1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A* Length = 357 | Back alignment and structure |
|---|
Score = 115 bits (290), Expect = 7e-29
Identities = 73/342 (21%), Positives = 119/342 (34%), Gaps = 27/342 (7%)
Query: 117 NGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSL-KRARQKLLQKHQVFIV 175
G V VTG GF G SL L+ G V G + PSL + AR +
Sbjct: 8 QGKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSL-TAPTVPSLFETARVADGMQS----E 62
Query: 176 EGDLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVN 235
GD+ D L + V H+AAQ VR + P ++N+ G V LLE + V
Sbjct: 63 IGDIRDQNKLLESIREFQPEIVFHMAAQPLVRLSYSEPVETYSTNVMGTVYLLEAIRHVG 122
Query: 236 PQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIY------- 288
++V +S Y + + Y+ +K E + +Y + +
Sbjct: 123 GVKAVVNITSDKCYDNKEWIWGYRENEAMGGYDPYSNSKGCAELVTSSYRNSFFNPANYG 182
Query: 289 --GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVV 346
G A+ +R V G D A DIL+ + R + ++ + +
Sbjct: 183 QHGTAVATVRAGNVIGG---GDWALDRIVPDILRAFEQSQPVIIRNPHAIRPWQHVLEPL 239
Query: 347 KG---CVGATGSGGKKRGPAQLRVYNLG--NTSPVPVGRLVSILENLLNTKAKKHVIRMP 401
G + G + +N G + PV +V + A +
Sbjct: 240 SGYLLLAQKLYTDGAEYAEG----WNFGPNDADATPVKNIVEQMVKYWGEGASWQLDGNA 295
Query: 402 RNGDVPYTHANVSLAYKDFGYKPTTDLAAGLRKFVKWYVSYY 443
+ Y + S A G+ P +L L V W+ ++
Sbjct: 296 HPHEAHYLKLDCSKAKMQLGWHPRWNLNTTLEYIVGWHKNWL 337
|
| >2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain dehydrogenase/reductase, rossmann fold, oxidoreductase; HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus} Length = 321 | Back alignment and structure |
|---|
Score = 94.2 bits (235), Expect = 1e-21
Identities = 62/250 (24%), Positives = 109/250 (43%), Gaps = 26/250 (10%)
Query: 107 VRHSATPRRPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKL 166
+R S M L+TG AGFVG + + L ++ V G N P
Sbjct: 1 MRGSHHHHHHGSMRALITGVAGFVGKYLANHLTEQNVEVFGTSRNNEAKLP--------- 51
Query: 167 LQKHQVFIVEGDLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVN 226
V ++ D+ D+ + K+ + ++ HLAA++ V+ + N + ++N+ G ++
Sbjct: 52 ----NVEMISLDIMDSQRVKKVISDIKPDYIFHLAAKSSVKDSWLNKKGTFSTNVFGTLH 107
Query: 227 LLEVCKSVNPQPSIVWASSSSVYGL--NTQVPFSESHRTDQPASLYAATKKAGEEIAHTY 284
+L+ + N I+ SS YG+ + P SE ++ +P S Y +K + +A Y
Sbjct: 108 VLDAVRDSNLDCRILTIGSSEEYGMILPEESPVSEENQL-RPMSPYGVSKASVGMLARQY 166
Query: 285 NHIYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDR------EVARD 338
YG+ + R F GP G+ F T+D + + Q+ E RD
Sbjct: 167 VKAYGMDIIHTRTFNHIGP-GQSLG---FVTQDFAKQIVDIEMEKQEPIIKVGNLEAVRD 222
Query: 339 FTYIDDVVKG 348
FT + D+V+
Sbjct: 223 FTDVRDIVQA 232
|
| >4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis} Length = 346 | Back alignment and structure |
|---|
Score = 89.9 bits (224), Expect = 5e-20
Identities = 90/368 (24%), Positives = 146/368 (39%), Gaps = 93/368 (25%)
Query: 114 RRPNGMTVLVTGAAGFVGSH-CSLALKKRGDG-VLGLD------NFNSYYDPSLKRARQK 165
+ N M +LVTG AGF+GS+ L+ ++ D N N ++K +
Sbjct: 20 FQSNAMNILVTGGAGFIGSNFVHYMLQSYETYKIINFDALTYSGNLN-----NVKSIQDH 74
Query: 166 LLQKHQVFIVEGDLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFV 225
+ F V+G++ + LL + +++ AA++ V +++NP + +N+ G V
Sbjct: 75 ---PNYYF-VKGEIQNGELLEHVIKERDVQVIVNFAAESHVDRSIENPIPFYDTNVIGTV 130
Query: 226 NLLEVCKSVNPQPSIVWA------SSSSVYG-LNTQVPFSESHRTDQPASLYAATKKAGE 278
LLE+ K S+ VYG L F+E P S Y+++K + +
Sbjct: 131 TLLELVKK-------YPHIKLVQVSTDEVYGSLGKTGRFTEETPLA-PNSPYSSSKASAD 182
Query: 279 EIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFF-------FTKDILQGKTIDVYKTQD 331
IA Y Y L + R YGP Y + + L+GK + +Y D
Sbjct: 183 MIALAYYKTYQLPVIVTRCSNNYGP-------YQYPEKLIPLMVTNALEGKKLPLYG--D 233
Query: 332 DREVARDFTYIDD--------VVKGCVGATGSGGKKRGPAQLRVYNLGNTSPVPVGR--- 380
V RD+ ++ D + KG VG VYN+G G
Sbjct: 234 GLNV-RDWLHVTDHCSAIDVVLHKGRVG--------------EVYNIG-------GNNEK 271
Query: 381 ----LVSILENLLNTKAK--KHVIRMPRNG-DVPYTHA-NVSLAYKDFGYKPTTDLAAGL 432
+V + LL K ++V R G D Y A N +F ++P GL
Sbjct: 272 TNVEVVEQIITLLGKTKKDIEYV--TDRLGHDRRY--AINAEKMKNEFDWEPKYTFEQGL 327
Query: 433 RKFVKWYV 440
++ V+WY
Sbjct: 328 QETVQWYE 335
|
| >3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT} Length = 286 | Back alignment and structure |
|---|
Score = 88.2 bits (219), Expect = 1e-19
Identities = 51/272 (18%), Positives = 88/272 (32%), Gaps = 43/272 (15%)
Query: 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGD 178
+L+ G G +G + L +G V G L+R+ Q + Q I D
Sbjct: 4 SKILIAGC-GDLGLELARRLTAQGHEVTG-----------LRRSAQPMPAGVQTLI--AD 49
Query: 179 LNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQP 238
+ L + + P +L A + + Y S + G N L + Q
Sbjct: 50 VTRPDTLASIVHLRP--EILVYCVAASEY----SDEHYRLSYVEGLRNTLSALEGAPLQ- 102
Query: 239 SIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIYGLALTGLRFF 298
+ + SS+ VYG + E E + + T LRF
Sbjct: 103 HVFFVSSTGVYGQEVEEWLDEDTPPI-AKDFSGKRMLEAEALLA------AYSSTILRFS 155
Query: 299 TVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGATGSGGK 358
+YGP GR M T + + + + + + DD +
Sbjct: 156 GIYGP-GRLRMIRQAQTPEQWPAR--NAW---------TNRIHRDDGAAFIAYLI---QQ 200
Query: 359 KRGPAQLRVYNLGNTSPVPVGRLVSILENLLN 390
+ R+Y + + P+PV L+ L +
Sbjct: 201 RSHAVPERLYIVTDNQPLPVHDLLRWLADRQG 232
|
| >1kew_A RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fold, lyase; HET: TYD NAD; 1.80A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1g1a_A* 1keu_A* 1bxk_A* Length = 361 | Back alignment and structure |
|---|
Score = 86.4 bits (215), Expect = 1e-18
Identities = 88/386 (22%), Positives = 148/386 (38%), Gaps = 117/386 (30%)
Query: 119 MTVLVTGAAGFVGSH-CSLALKKRGDGVLGLD------NFNSYYDPSLKRARQKLLQKHQ 171
M +L+TG AGF+GS +K D V+ +D N SL +
Sbjct: 1 MKILITGGAGFIGSAVVRHIIKNTQDTVVNIDKLTYAGNLE-----SLSDISES---NRY 52
Query: 172 VFIVEGDLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVC 231
F D+ D+ +T++F+ V+HLAA++ V ++ P +++ +NI G LLEV
Sbjct: 53 NF-EHADICDSAEITRIFEQYQPDAVMHLAAESHVDRSITGPAAFIETNIVGTYALLEVA 111
Query: 232 KSVNPQPSIVWASSSS---------------VYG----------LNTQVPFSESHRTDQP 266
+ W++ VYG T F+E+ P
Sbjct: 112 RK-------YWSALGEDKKNNFRFHHISTDEVYGDLPHPDEVENSVTLPLFTETTAYA-P 163
Query: 267 ASLYAATKKAGEEIAHTYNHIYGLALTGLRFFTV-------YGPWGRPDMAYFF------ 313
+S Y+A+K + + + + YGL T+ YGP Y F
Sbjct: 164 SSPYSASKASSDHLVRAWRRTYGLP-------TIVTNCSNNYGP-------YHFPEKLIP 209
Query: 314 -FTKDILQGKTIDVYKTQDDREVARDFTYIDD--------VVKGCVGATGSGGKKRGPAQ 364
+ L+GK + +Y ++ RD+ Y++D V +G G T
Sbjct: 210 LVILNALEGKPLPIYG--KGDQI-RDWLYVEDHARALHMVVTEGKAGET----------- 255
Query: 365 LRVYNLGNTSPVP----VGRLVSILENLLNTKAK-----KHVIRMPRNG-DVPYTHA-NV 413
YN+G + V + +L+ ++ +V R G D Y A +
Sbjct: 256 ---YNIGGHNEKKNLDVVFTICDLLDEIVPKATSYREQITYV--ADRPGHDRRY--AIDA 308
Query: 414 SLAYKDFGYKPTTDLAAGLRKFVKWY 439
++ G+KP +G+RK V+WY
Sbjct: 309 GKISRELGWKPLETFESGIRKTVEWY 334
|
| >1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA; 3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1 Length = 660 | Back alignment and structure |
|---|
Score = 86.6 bits (215), Expect = 3e-18
Identities = 73/381 (19%), Positives = 132/381 (34%), Gaps = 69/381 (18%)
Query: 109 HSATPRRPNGMTVLVTGAAGFVGSH-CSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLL 167
VL+ G GF+G+H L++ V GLD + A + L
Sbjct: 306 SQPACTARRRTRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSD--------AISRFL 357
Query: 168 QKHQVFIVEGDL--NDAPL--LTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAG 223
VEGD+ + + K DV VL L A A +NP +
Sbjct: 358 NHPHFHFVEGDISIHSEWIEYHVKKCDV-----VLPLVAIATPIEYTRNPLRVFELDFEE 412
Query: 224 FVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRT------DQPASLYAATKKAG 277
+ ++ C + I++ S+S VYG+ + F E H ++P +Y+ +K+
Sbjct: 413 NLRIIRYCVKYRKR--IIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLL 470
Query: 278 EEIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFF----------FTKDILQGKTIDVY 327
+ + Y GL T R F GP R D ++++G I +
Sbjct: 471 DRVIWAYGEKEGLQFTLFRPFNWMGP--RLDNLNAARIGSSRAITQLILNLVEGSPIKLI 528
Query: 328 KTQDDREVARDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILE- 386
D + R FT I D ++ + + N+GN P SI E
Sbjct: 529 ---DGGKQKRCFTDIRDGIEALYRIIEN---AGNRCDGEIINIGN----PENE-ASIEEL 577
Query: 387 -NLLNTKAKKHVIRMPRNGDVPYTHA------------------NVSLAYKDFGYKPTTD 427
+L +KH +R + ++ A++ ++P D
Sbjct: 578 GEMLLASFEKHPLRHHFPPFAGFRVVESSSYYGKGYQDVEHRKPSIRNAHRCLDWEPKID 637
Query: 428 LAAGLRKFVKWYVSYYGIQPR 448
+ + + + +++ + +
Sbjct: 638 MQETIDETLDFFLRTVDLTDK 658
|
| >2hun_A 336AA long hypothetical DTDP-glucose 4,6-dehydrat; rossmann fold, structural genomics, NPPSFA; HET: NAD; 2.07A {Pyrococcus horikoshii} Length = 336 | Back alignment and structure |
|---|
Score = 83.7 bits (208), Expect = 6e-18
Identities = 88/358 (24%), Positives = 145/358 (40%), Gaps = 81/358 (22%)
Query: 117 NGMTVLVTGAAGFVGSH-CSLALKKRGDG-VLGLD------NFNSYYDPSLKRARQKLLQ 168
+ M +LVTG GF+GS+ L+K D V+ +D N +LK
Sbjct: 2 HSMKLLVTGGMGFIGSNFIRYILEKHPDWEVINIDKLGYGSNPA-----NLKDLEDD--- 53
Query: 169 KHQVFIVEGDLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLL 228
F V+GD+ D L+ +L V+HLAA++ V ++ +P+ ++ SN+ G LL
Sbjct: 54 PRYTF-VKGDVADYELVKELVR--KVDGVVHLAAESHVDRSISSPEIFLHSNVIGTYTLL 110
Query: 229 EVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIY 288
E + NP+ V S+ VYG + F+E+ R P+S Y+ATK A + + + Y
Sbjct: 111 ESIRRENPEVRFVHVSTDEVYGDILKGSFTENDRLM-PSSPYSATKAASDMLVLGWTRTY 169
Query: 289 GLALTGLRFFTVYGPWGRPDMAYFF-------FTKDILQGKTIDVYKTQDDREVARDFTY 341
L + R YGP Y F G I +Y + V RD+ Y
Sbjct: 170 NLNASITRCTNNYGP-------YQFPEKLIPKTIIRASLGLKIPIYG--TGKNV-RDWLY 219
Query: 342 IDD--------VVKGCVGATGSGGKKRGPAQLRVYNLGNTSPVPVGR-------LVSILE 386
++D ++KG YN+ +V I+
Sbjct: 220 VEDHVRAIELVLLKGESREI--------------YNIS-------AGEEKTNLEVVKIIL 258
Query: 387 NLLNTKAK--KHVIRMPRNG-DVPYTHA-NVSLAYKDFGYKPTTDLAAGLRKFVKWYV 440
L+ + + V R G D+ Y + + +D ++P G++K + WY+
Sbjct: 259 RLMGKGEELIELV--EDRPGHDLRY--SLDSWKITRDLKWRPKYTFDEGIKKTIDWYL 312
|
| >1r6d_A TDP-glucose-4,6-dehydratase; rossmann fold, short-chain dehydrogenase/reductase, lyase; HET: NAD DAU; 1.35A {Streptomyces venezuelae} SCOP: c.2.1.2 PDB: 1r66_A* Length = 337 | Back alignment and structure |
|---|
Score = 82.6 bits (205), Expect = 2e-17
Identities = 89/355 (25%), Positives = 140/355 (39%), Gaps = 78/355 (21%)
Query: 119 MTVLVTGAAGFVGSH------CSLALKKRGDGVLGLD------NFNSYYDPSLKRARQKL 166
M +LVTG AGF+GSH D V+ LD N + +
Sbjct: 1 MRLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRANLAP---------V 51
Query: 167 LQKHQVFIVEGDLNDAPLLTKLF---DVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAG 223
++ V GD+ DA LL + D + +H AA++ V ++ + +N+ G
Sbjct: 52 DADPRLRFVHGDIRDAGLLARELRGVDAI-----VHFAAESHVDRSIAGASVFTETNVQG 106
Query: 224 FVNLLEVCKSVNPQPSIVWA------SSSSVYGLNTQVPFSESHRTDQPASLYAATKKAG 277
LL+ S++ VYG ++ES + P S YAA+K
Sbjct: 107 TQTLLQCAVDA-------GVGRVVHVSTNQVYGSIDSGSWTESSPLE-PNSPYAASKAGS 158
Query: 278 EEIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFF-------FTKDILQGKTIDVYKTQ 330
+ +A Y+ YGL + R YGP Y F ++L G T+ +Y
Sbjct: 159 DLVARAYHRTYGLDVRITRCCNNYGP-------YQHPEKLIPLFVTNLLDGGTLPLYG-- 209
Query: 331 DDREVARDFTYIDDVVKG--CVGATGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENL 388
D V R++ + DD +G V A G G +Y++G + L IL +
Sbjct: 210 DGANV-REWVHTDDHCRGIALVLAGGRAG--------EIYHIGGGLELTNRELTGILLDS 260
Query: 389 LNTKAK--KHVIRMPRNG-DVPYTHA-NVSLAYKDFGYKPTTDLAAGLRKFVKWY 439
L + V R G D+ Y + + ++ GY+P A GL + V+WY
Sbjct: 261 LGADWSSVRKV--ADRKGHDLRY--SLDGGKIERELGYRPQVSFADGLARTVRWY 311
|
| >2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase, oxidoreductase, SDR, cardenolides, cardiac glycosides; HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A* Length = 364 | Back alignment and structure |
|---|
Score = 82.1 bits (202), Expect = 3e-17
Identities = 47/299 (15%), Positives = 85/299 (28%), Gaps = 50/299 (16%)
Query: 120 TVLVTGAAGFVGSHCSLALKKRGDG-----VLGLDNFNSYYDPSLKRARQKLLQKHQVFI 174
L+ G G +G+ + L V G+ R R + + +
Sbjct: 3 VALIVGVTGIIGNSLAEILPLADTPGGPWKVYGVAR----------RTRPAWHEDNPINY 52
Query: 175 VEGDLND-APLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKS 233
V+ D++D KL + THV ++ Q +N F N+L+
Sbjct: 53 VQCDISDPDDSQAKLSPLTDVTHVFYVT-----WANRSTEQENCEANSKMFRNVLDAVIP 107
Query: 234 VNPQPS-IVWASSSSVY---------GLNTQVPFSESH-RTDQPASLYAATKKAGEEIAH 282
P I + Y + P++E R Y EE+
Sbjct: 108 NCPNLKHISLQTGRKHYMGPFESYGKIESHDPPYTEDLPRLKYMNFYYDLEDIMLEEVEK 167
Query: 283 TYNHIYGLALTGLRFFTVYGPWGRPDM-------AYFFFTKDILQGKTIDVYKTQDDREV 335
GL + R ++G M Y K +GK + + +
Sbjct: 168 K----EGLTWSVHRPGNIFGFSPYSMMNLVGTLCVYAAICKH--EGKVLRFTGCKAAWDG 221
Query: 336 ARDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAK 394
D + D + + + A A+ +N+ N +L +
Sbjct: 222 YSDCSDADLIAEHHIWAAVDPY-----AKNEAFNVSNGDVFKWKHFWKVLAEQFGVECG 275
|
| >3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron} Length = 227 | Back alignment and structure |
|---|
Score = 74.4 bits (183), Expect = 2e-15
Identities = 29/235 (12%), Positives = 66/235 (28%), Gaps = 36/235 (15%)
Query: 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKL-LQKHQVFIVEG 177
+++ GA+GFVGS RG V + R +K+ ++ + + +
Sbjct: 5 KKIVLIGASGFVGSALLNEALNRGFEVTAVV-----------RHPEKIKIENEHLKVKKA 53
Query: 178 DLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQ 237
D++ + ++ V+ N I ++ +++ K
Sbjct: 54 DVSSLDEVCEVCKGA--DAVISAFN------PGWNNPDIYDETIKVYLTIIDGVKKAGVN 105
Query: 238 PSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIYGLALTGLRF 297
+ + + + +S + P ++ K GE + +
Sbjct: 106 R-FLMVGGAGSLFIAPGLRLMDS--GEVPENILPGVKALGEFYLNFLMKEKEIDWVFFSP 162
Query: 298 FTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGA 352
P R T GK + V ++D +
Sbjct: 163 AADMRPGVR--------TGRYRLGKDDMIVD-----IVGNSHISVEDYAAAMIDE 204
|
| >1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX NAD; 1.5A {Streptococcus suis} SCOP: c.2.1.2 PDB: 1ker_A* 1ket_A* 1kep_A* Length = 348 | Back alignment and structure |
|---|
Score = 74.1 bits (183), Expect = 9e-15
Identities = 82/369 (22%), Positives = 136/369 (36%), Gaps = 99/369 (26%)
Query: 119 MTVLVTGAAGFVGSH-CSLALKKRGDG-VLGLD------NFNSYYDPSLKRARQKLLQKH 170
++VTG AGF+GS+ D V LD N + +
Sbjct: 5 KNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAGNKANLEA----------ILGD 54
Query: 171 QVFIVEGDLNDAPLLTKLF---DVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNL 227
+V +V GD+ DA L+ KL D ++H AA++ ++ +P ++ +N G L
Sbjct: 55 RVELVVGDIADAELVDKLAAKADA-----IVHYAAESHNDNSLNDPSPFIHTNFIGTYTL 109
Query: 228 LEVCKSVNPQPSIVWA-----SSSSVYG-LNTQVP-----------FSESHRTDQPASLY 270
LE + S+ VYG L + F+ + P+S Y
Sbjct: 110 LEAARK-------YDIRFHHVSTDEVYGDLPLREDLPGHGEGPGEKFTAETNYN-PSSPY 161
Query: 271 AATKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTKDI-------LQGKT 323
++TK A + I + +G+ T YGP Y K I L G
Sbjct: 162 SSTKAASDLIVKAWVRSFGVKATISNCSNNYGP-------YQHIEKFIPRQITNILAGIK 214
Query: 324 IDVYKTQDDREVARDFTYIDD--------VVKGCVGATGSGGKKRGPAQLRVYNLGNTSP 375
+Y + + V RD+ + +D + KG +G T Y +G
Sbjct: 215 PKLYG--EGKNV-RDWIHTNDHSTGVWAILTKGRMGET--------------YLIGADGE 257
Query: 376 VPVGRLVSILENLLNTKAK--KHVIRMPRNG-DVPYTHA-NVSLAYKDFGYKPT-TDLAA 430
++ ++ + HV R G D+ Y A + S + G+ P TD +
Sbjct: 258 KNNKEVLELILEKMGQPKDAYDHV--TDRAGHDLRY--AIDASKLRDELGWTPQFTDFSE 313
Query: 431 GLRKFVKWY 439
GL + ++WY
Sbjct: 314 GLEETIQWY 322
|
| >4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif, rossmann fold, short chain dehydrogenase/REDU family, reductase; 2.30A {Mycobacterium tuberculosis} Length = 478 | Back alignment and structure |
|---|
Score = 72.3 bits (177), Expect = 8e-14
Identities = 49/324 (15%), Positives = 94/324 (29%), Gaps = 55/324 (16%)
Query: 110 SATPRRPNGMTVLVTGAAGFVGSH--------CSLALK-------KRGDGVLG--LDNFN 152
+ P TVL+TGA GF+G + + + + + F+
Sbjct: 65 NLPGPSPELRTVLLTGATGFLGRYLVLELLRRLDVDGRLICLVRAESDEDARRRLEKTFD 124
Query: 153 SYYDPSLKRARQKLLQKHQVFIVEGDLNDAPL------LTKLFDVVPFTHVLHLAAQAGV 206
S L+ ++ + + +V GD ++ L +L + V ++ AA V
Sbjct: 125 SGDPELLRHFKELAADR--LEVVAGDKSEPDLGLDQPMWRRLAETV--DLIVDSAAM--V 178
Query: 207 RYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQP 266
N+AG L+ + + +P + S++ V F+E
Sbjct: 179 NAFP--YHELFGPNVAGTAELIRIALTTKLKP-FTYVSTADVGAAIEPSAFTEDADIRVI 235
Query: 267 ASL----------YAATKKAGEEIAHTYNHIYGLALTGLRFFTVYGP------WGRPDMA 310
+ Y +K AGE + N + L + R + D
Sbjct: 236 SPTRTVDGGWAGGYGTSKWAGEVLLREANDLCALPVAVFRCGMILADTSYAGQLNMSDWV 295
Query: 311 YFFFTKDILQGKTIDVYKTQDDREVAR----DFTYIDDVVKGCVGATGSGGKKRGPAQLR 366
+ G + D + D + V + A
Sbjct: 296 TRMVLSLMATGIAPRSFYEPDSEGNRQRAHFDGLPVTFVAEAIAVLGARVAGS-SLAGFA 354
Query: 367 VYNLGN--TSPVPVGRLVSILENL 388
Y++ N + + V L
Sbjct: 355 TYHVMNPHDDGIGLDEYVDWLIEA 378
|
| >3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes} Length = 221 | Back alignment and structure |
|---|
Score = 61.1 bits (148), Expect = 6e-11
Identities = 31/189 (16%), Positives = 62/189 (32%), Gaps = 26/189 (13%)
Query: 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKH-QVFIVEG 177
M + + GA G GS K RG V + R K+ Q H + I++
Sbjct: 1 MKIGIIGATGRAGSRILEEAKNRGHEVTAIV-----------RNAGKITQTHKDINILQK 49
Query: 178 DLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQ 237
D+ D + L+ Q V A ++ +L+ V
Sbjct: 50 DIFDLT-------------LSDLSDQNVVVDAYGISPDEAEKHVTSLDHLISVLNGTV-S 95
Query: 238 PSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIYGLALTGLRF 297
P ++ ++ ++ + + A Y + +++ H +H + T +
Sbjct: 96 PRLLVVGGAASLQIDEDGNTLLESKGLREAPYYPTARAQAKQLEHLKSHQAEFSWTYISP 155
Query: 298 FTVYGPWGR 306
++ P R
Sbjct: 156 SAMFEPGER 164
|
| >1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2 Length = 335 | Back alignment and structure |
|---|
Score = 59.5 bits (145), Expect = 6e-10
Identities = 53/198 (26%), Positives = 85/198 (42%), Gaps = 15/198 (7%)
Query: 107 VRHSATPRRPNGM--TVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRAR- 163
+R S M + LVTG G G++ + L ++G V GL S S R R
Sbjct: 1 MRGSHHHHHHGSMTRSALVTGITGQDGAYLAKLLLEKGYRVHGLVARRS----SDTRWRL 56
Query: 164 QKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAG 223
++L + + +GD+ DA + + V +LAAQ+ V + P + + G
Sbjct: 57 RELGIEGDIQYEDGDMADACSVQRAVIKAQPQEVYNLAAQSFVGASWNQPVTTGVVDGLG 116
Query: 224 FVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSES---HRTDQPASLYAATKKAGEEI 280
+LLE + +P+ AS+S ++GL E+ + P S Y K G I
Sbjct: 117 VTHLLEAIRQFSPETRFYQASTSEMFGLIQAERQDENTPFY----PRSPYGVAKLYGHWI 172
Query: 281 AHTYNHIYGL-ALTGLRF 297
Y +GL A +G+ F
Sbjct: 173 TVNYRESFGLHASSGILF 190
|
| >2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A* Length = 345 | Back alignment and structure |
|---|
Score = 55.7 bits (135), Expect = 1e-08
Identities = 49/180 (27%), Positives = 83/180 (46%), Gaps = 11/180 (6%)
Query: 122 LVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRAR-QKLLQKHQVFIVEGDLN 180
L+TG G G++ + L ++G V G D + R ++L ++ V I+ DL
Sbjct: 7 LITGIRGQDGAYLAKLLLEKGYEVYGADRRSG----EFASWRLKELGIENDVKIIHMDLL 62
Query: 181 DAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVA-SNIAGFVNLLEVCKSVNPQPS 239
+ + + + V V +LAAQ+ V + + P A + G + +LE ++V P
Sbjct: 63 EFSNIIRTIEKVQPDEVYNLAAQSFVGVSFEQPI-LTAEVDAIGVLRILEALRTVKPDTK 121
Query: 240 IVWASSSSVYGLNTQVPFSESHRTD-QPASLYAATKKAGEEIAHTYNHIYGL-ALTGLRF 297
AS+S ++G ++P +E T P S YA K G I Y Y + A +G+ F
Sbjct: 122 FYQASTSEMFGKVQEIPQTEK--TPFYPRSPYAVAKLFGHWITVNYREAYNMFACSGILF 179
|
| >3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334} Length = 224 | Back alignment and structure |
|---|
Score = 53.9 bits (129), Expect = 2e-08
Identities = 24/190 (12%), Positives = 49/190 (25%), Gaps = 25/190 (13%)
Query: 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGD 178
M + V GA G GS ++RG VL + R QK + +
Sbjct: 1 MKIAVLGATGRAGSAIVAEARRRGHEVLAVV-----------RDPQKAADRLGATVATLV 49
Query: 179 LNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQS--YVASNIAGFVNLLEVCKSVNP 236
L L + V A+ P ++ +L+ + ++ +
Sbjct: 50 KEPLVLTEA-----------DLDSVDAVVDALSVPWGSGRGYLHLDFATHLVSLLRNSDT 98
Query: 237 QPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIYGLALTGLR 296
++ S+S+ P + + + G+
Sbjct: 99 -LAVFILGSASLAMPGADHPMILDFPESAASQPWYDGALYQYYEYQFLQMNANVNWIGIS 157
Query: 297 FFTVYGPWGR 306
+
Sbjct: 158 PSEAFPSGPA 167
|
| >2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis vinifera} PDB: 3hfs_A Length = 338 | Back alignment and structure |
|---|
Score = 51.9 bits (125), Expect = 2e-07
Identities = 51/258 (19%), Positives = 92/258 (35%), Gaps = 36/258 (13%)
Query: 111 ATPRRPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKH 170
AT T V G GFV S L ++G V + DP ++ LL+
Sbjct: 2 ATQHPIGKKTACVVGGTGFVASLLVKLLLQKGYAVNT-----TVRDPDNQKKVSHLLELQ 56
Query: 171 ---QVFIVEGDLNDAPLLTKLFD--VVPFTHVLHLAAQAGVRYAMQNPQSYV---ASNIA 222
+ I DL D F+ + V H+A V +A ++P++ + A I
Sbjct: 57 ELGDLKIFRADLTDE----LSFEAPIAGCDFVFHVA--TPVHFASEDPENDMIKPA--IQ 108
Query: 223 GFVNLLEVCKSVNPQPSIVWASS-SSVYGLNTQ---VPFSESHRTD--------QPASLY 270
G VN+++ C ++ SS ++V + E + TD P Y
Sbjct: 109 GVVNVMKACTRAKSVKRVILTSSAAAVTINQLDGTGLVVDEKNWTDIEFLTSAKPPTWGY 168
Query: 271 AATKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPDM-AYFFFTKDILQGKTIDVYKT 329
A+K E+ A + + L + + G D+ + ++ G +
Sbjct: 169 PASKTLAEKAAWKFAEENNIDLITVIPTLMAGSSLTSDVPSSIGLAMSLITGNEFLINGM 228
Query: 330 QDDREVARDFTYID--DV 345
+ + ++ + DV
Sbjct: 229 KGMQMLSGSVSIAHVEDV 246
|
| >2ggs_A 273AA long hypothetical DTDP-4-dehydrorhamnose reductase; alpha, beta, oxidoreductase; HET: NDP; 1.70A {Sulfolobus tokodaii} Length = 273 | Back alignment and structure |
|---|
Score = 51.4 bits (124), Expect = 2e-07
Identities = 33/170 (19%), Positives = 58/170 (34%), Gaps = 24/170 (14%)
Query: 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGD 178
M L+TGA+G +G S L +R + + ++ L D
Sbjct: 1 MRTLITGASGQLGIELSRLLSERHEVIKVYNSSEIQGGYKL------------------D 42
Query: 179 LNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQP 238
L D P L +++ AA V + N +++ K ++
Sbjct: 43 LTDFPRLEDFIIKKRPDVIINAAAMTDVDKCEIEKEKAYKINAEAVRHIVRAGKVIDSY- 101
Query: 239 SIVWASSSSVY-GLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHI 287
IV S+ V+ G + E + P + Y +K GE A + +
Sbjct: 102 -IVHISTDYVFDGEKG--NYKEEDIPN-PINYYGLSKLLGETFALQDDSL 147
|
| >2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A Length = 315 | Back alignment and structure |
|---|
Score = 50.7 bits (122), Expect = 4e-07
Identities = 31/169 (18%), Positives = 55/169 (32%), Gaps = 37/169 (21%)
Query: 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGD 178
VLVTGA G +G ++ +G + +++ +
Sbjct: 3 RRVLVTGATGLLGRAVHKEFQQNNWHAVGCGFRRARPK------FEQV-----------N 45
Query: 179 LNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQP 238
L D+ + + ++H AA+ P + N+ NL + +V
Sbjct: 46 LLDSNAVHHIIHDFQPHVIVHCAAERRPDVVENQPDAASQLNVDASGNLAKEAAAVG--- 102
Query: 239 SIVWASSSSVY--------GLNTQVPFSESHRTDQPASLYAATKKAGEE 279
+ +Y G N P+ E P +LY TK GE+
Sbjct: 103 ------AFLIYISSDYVFDGTNP--PYREEDIPA-PLNLYGKTKLDGEK 142
|
| >1db3_A GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lyase; 2.30A {Escherichia coli} SCOP: c.2.1.2 Length = 372 | Back alignment and structure |
|---|
Score = 50.4 bits (121), Expect = 6e-07
Identities = 54/191 (28%), Positives = 86/191 (45%), Gaps = 26/191 (13%)
Query: 122 LVTGAAGFVGSHCSLALKKRGDGVLGLD----NFNS------YYDPSLKRARQKLLQKHQ 171
L+TG G GS+ + L ++G V G+ +FN+ Y DP +
Sbjct: 5 LITGVTGQDGSYLAEFLLEKGYEVHGIKRRASSFNTERVDHIYQDPHTCNPK-------- 56
Query: 172 VFIVEGDLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVA-SNIAGFVNLLEV 230
+ GDL+D LT++ V V +L A + V + ++P+ Y A + G + LLE
Sbjct: 57 FHLHYGDLSDTSNLTRILREVQPDEVYNLGAMSHVAVSFESPE-YTADVDAMGTLRLLEA 115
Query: 231 CKSVNPQPSIVW--ASSSSVYGLNTQVPFSESHRTD-QPASLYAATKKAGEEIAHTYNHI 287
+ + + + AS+S +YGL ++P E+ T P S YA K I Y
Sbjct: 116 IRFLGLEKKTRFYQASTSELYGLVQEIPQKET--TPFYPRSPYAVAKLYAYWITVNYRES 173
Query: 288 YGL-ALTGLRF 297
YG+ A G+ F
Sbjct: 174 YGMYACNGILF 184
|
| >1t2a_A GDP-mannose 4,6 dehydratase; structural genomics consortium, rossman-fold, short-chain dehydrogenase/reductase, SDR, structural genomics,lyase; HET: NDP GDP; 1.84A {Homo sapiens} SCOP: c.2.1.2 Length = 375 | Back alignment and structure |
|---|
Score = 50.0 bits (120), Expect = 9e-07
Identities = 52/191 (27%), Positives = 86/191 (45%), Gaps = 25/191 (13%)
Query: 122 LVTGAAGFVGSHCSLALKKRGDGVLGLD----NFNS------YYDPSLKRARQKLLQKHQ 171
L+TG G GS+ + L ++G V G+ +FN+ Y +P
Sbjct: 28 LITGITGQDGSYLAEFLLEKGYEVHGIVRRSSSFNTGRIEHLYKNPQAHIEGN------- 80
Query: 172 VFIVEGDLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVA-SNIAGFVNLLEV 230
+ + GDL D+ L K+ + V T + +L AQ+ V+ + + Y A + G + LL+
Sbjct: 81 MKLHYGDLTDSTCLVKIINEVKPTEIYNLGAQSHVKISFDLAE-YTADVDGVGTLRLLDA 139
Query: 231 CKSVNPQPSIVW--ASSSSVYGLNTQVPFSESHRTD-QPASLYAATKKAGEEIAHTYNHI 287
K+ S+ + AS+S +YG ++P E+ T P S Y A K I +
Sbjct: 140 VKTCGLINSVKFYQASTSELYGKVQEIPQKET--TPFYPRSPYGAAKLYAYWIVVNFREA 197
Query: 288 YGL-ALTGLRF 297
Y L A+ G+ F
Sbjct: 198 YNLFAVNGILF 208
|
| >1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2 Length = 308 | Back alignment and structure |
|---|
Score = 49.5 bits (118), Expect = 1e-06
Identities = 42/287 (14%), Positives = 83/287 (28%), Gaps = 56/287 (19%)
Query: 120 TVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDL 179
+L+ GA G++G H + A G L ++ S K + + IV G +
Sbjct: 6 RILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFKASGANIVHGSI 65
Query: 180 NDAPLLTKLF---DVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNP 236
+D L + DVV ++ ++ Q VN+++ K V
Sbjct: 66 DDHASLVEAVKNVDVV-------ISTVGSLQIESQ-------------VNIIKAIKEVGT 105
Query: 237 QPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIYGLALTGLR 296
S +G + ++ +PA K I +
Sbjct: 106 VKRFF----PSEFGNDV-----DNVHAVEPAKSVFEVKAK------VRRAIEAEGIPYTY 150
Query: 297 FFTVYGPWGRPDMAYFF-----FTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVG 351
+ + YF + + D F +D+ +
Sbjct: 151 VSS--NCF----AGYFLRSLAQAGLTAPPRDKVVIL---GDGNARVVFVKEEDIGTFTIK 201
Query: 352 ATGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVI 398
A LR + + + LV++ E ++ +K +
Sbjct: 202 AVDDPRTLNKTLYLR----LPANTLSLNELVALWEKKIDKTLEKAYV 244
|
| >3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans} Length = 236 | Back alignment and structure |
|---|
Score = 48.9 bits (117), Expect = 1e-06
Identities = 26/187 (13%), Positives = 53/187 (28%), Gaps = 36/187 (19%)
Query: 99 GGAEWEKQVRHSATPRRPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPS 158
G + GM VLV GA G V + LK +G + +
Sbjct: 2 GSSHHHHHHSSGRENLYFQGMRVLVVGANGKVARYLLSELKNKGHEPVAM---------- 51
Query: 159 LKRAR-----QKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNP 213
R +L ++ IV +L + + F + V+ A
Sbjct: 52 ---VRNEEQGPELRERGASDIVVANLEED--FSHAFASI--DAVVFAAGSGPHT----GA 100
Query: 214 QSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAAT 273
+ ++ G + ++ + + + SS + + Y
Sbjct: 101 DKTILIDLWGAIKTIQEAEKRGIKR-FIMVSSVGTV---------DPDQGPMNMRHYLVA 150
Query: 274 KKAGEEI 280
K+ ++
Sbjct: 151 KRLADDE 157
|
| >3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 3r14_A* Length = 221 | Back alignment and structure |
|---|
Score = 48.5 bits (115), Expect = 1e-06
Identities = 25/171 (14%), Positives = 51/171 (29%), Gaps = 38/171 (22%)
Query: 117 NGMT--VLVTGAAGFVGSH-CSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVF 173
N M + + GAAG + + L + R +++ +V
Sbjct: 2 NAMYXYITILGAAGQIAQXLTATLLTYTDMHITLYGR-----QLK-TRIPPEIIDHERVT 55
Query: 174 IVEGDLNDAPLLTKLF---DVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEV 230
++EG + L + +VV + + A + A+ NI + +
Sbjct: 56 VIEGSFQNPGXLEQAVTNAEVVFVGAMESGSDMASIVKALS------RXNIRRVIGV--- 106
Query: 231 CKSVNPQPSIVWASSSSVYGLNTQVP-FSESHRTDQPASLYAATKKAGEEI 280
S+ GL+ + P E D Y ++ +
Sbjct: 107 ----------------SMAGLSGEFPVALEKWTFDNLPISYVQGERQARNV 141
|
| >3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} Length = 286 | Back alignment and structure |
|---|
Score = 48.3 bits (115), Expect = 2e-06
Identities = 48/309 (15%), Positives = 94/309 (30%), Gaps = 67/309 (21%)
Query: 117 NGMT--VLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKR--ARQKLLQKHQV 172
N MT +L G G+ S AL +G ++G R + + ++
Sbjct: 2 NAMTGTLLSFGH-GYTARVLSRALAPQGWRIIGT-----------SRNPDQMEAIRASGA 49
Query: 173 FIVEGDLNDAPLLTKLFDVVPFTHVL-HLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVC 231
+ + L TH+L A +G + +A+ A
Sbjct: 50 EPLLWPGEEPSLDG-------VTHLLISTAPDSGGDPVLAALGDQIAARAA--------- 93
Query: 232 KSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIYGLA 291
+ + S+++VYG + E+ P + + E+ + L
Sbjct: 94 ----QFRWVGYLSTTAVYGDHDGAWVDETTPLT-PTAARGRWRVMAEQQWQ---AVPNLP 145
Query: 292 LTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVG 351
L R +YGP GR + +++D+ +
Sbjct: 146 LHVFRLAGIYGP-GR----------GPFSKLGKGGIRRIIKPGQVFSRIHVEDIAQVLAA 194
Query: 352 ATGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRNGDVPYTHA 411
+ P VYN+ + PVP +++ L +P V + A
Sbjct: 195 SM------ARPDPGAVYNVCDDEPVPPQDVIAYAAELQG---------LPLPPAVDFDKA 239
Query: 412 NVSLAYKDF 420
+++ + F
Sbjct: 240 DLTPMARSF 248
|
| >1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2 Length = 313 | Back alignment and structure |
|---|
Score = 48.4 bits (115), Expect = 2e-06
Identities = 36/235 (15%), Positives = 64/235 (27%), Gaps = 35/235 (14%)
Query: 120 TVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDL 179
VL+ G G++G A G L + K ++ ++E L
Sbjct: 6 RVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNID-KVQMLLYFKQLGAKLIEASL 64
Query: 180 NDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPS 239
+D L V V+ A GV Q + L+E K
Sbjct: 65 DDHQRLVDALKQV---DVVISALAGGVLSHHILEQ----------LKLVEAIKEAGNIKR 111
Query: 240 IVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEE--IAHTYNHIYGLALTGLRF 297
+ S +G++ + ++A E I +TY F
Sbjct: 112 FLP----SEFGMDPDIMEHALQPGSITFIDKRKVRRAIEAASIPYTYVSSNM-------F 160
Query: 298 FTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGA 352
+ + + + +Y D V + DDV + +
Sbjct: 161 AGYFAGSLAQLDGHMMPPR-----DKVLIY---GDGNVKGIWVDEDDVGTYTIKS 207
|
| >1n7h_A GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, short-chain dehydrogenase/reductase, LYA; HET: NDP GDP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1n7g_A* Length = 381 | Back alignment and structure |
|---|
Score = 47.7 bits (114), Expect = 4e-06
Identities = 62/193 (32%), Positives = 83/193 (43%), Gaps = 28/193 (14%)
Query: 122 LVTGAAGFVGSHCSLALKKRGDGVLGLD----NFNS------YYDPSLKRARQKLLQKHQ 171
L+TG G GS+ + L +G V GL NFN+ Y DP
Sbjct: 32 LITGITGQDGSYLTEFLLGKGYEVHGLIRRSSNFNTQRINHIYIDPHNVNKAL------- 84
Query: 172 VFIVEGDLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIA-GFVNLLEV 230
+ + DL DA L + DV+ V +LAAQ+ V + + P Y A +A G + LLE
Sbjct: 85 MKLHYADLTDASSLRRWIDVIKPDEVYNLAAQSHVAVSFEIPD-YTADVVATGALRLLEA 143
Query: 231 CKSVNPQPS----IVWASSSSVYGLNTQVPFSESHRTD-QPASLYAATKKAGEEIAHTYN 285
+S A SS ++G T P SE+ T P S YAA+K A Y
Sbjct: 144 VRSHTIDSGRTVKYYQAGSSEMFGS-TPPPQSET--TPFHPRSPYAASKCAAHWYTVNYR 200
Query: 286 HIYGL-ALTGLRF 297
YGL A G+ F
Sbjct: 201 EAYGLFACNGILF 213
|
| >1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; structural joint center for structural genomics, JCSG, protein structu initiative; HET: NAI UNL; 2.05A {Clostridium acetobutylicum} SCOP: c.2.1.2 Length = 292 | Back alignment and structure |
|---|
Score = 47.1 bits (113), Expect = 5e-06
Identities = 39/171 (22%), Positives = 58/171 (33%), Gaps = 27/171 (15%)
Query: 109 HSATPRRPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQ 168
+ M +L+TGA G +G LK + V+ D Q L
Sbjct: 3 SDKIHHHHHHMKILITGANGQLGREIQKQLKGKNVEVIPTD-------------VQDL-- 47
Query: 169 KHQVFIVEGDLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLL 228
D+ + + K F+ V++ AA V + N G NL
Sbjct: 48 ---------DITNVLAVNKFFNEKKPNVVINCAAHTAVDKCEEQYDLAYKINAIGPKNLA 98
Query: 229 EVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEE 279
SV + IV S+ V+ + P +E + P S Y TK GE
Sbjct: 99 AAAYSVGAE--IVQISTDYVFDGEAKEPITEFDEVN-PQSAYGKTKLEGEN 146
|
| >3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A} Length = 236 | Back alignment and structure |
|---|
Score = 45.9 bits (109), Expect = 8e-06
Identities = 19/179 (10%), Positives = 44/179 (24%), Gaps = 31/179 (17%)
Query: 104 EKQVRHSATPRRPNGM-TVLVTGAAGFVGSH-CSLALKKRGDGVLGLDNFNSYYDPSLKR 161
M VL+ GA G + H + K+ P+
Sbjct: 8 HHHSSGRENLYFQGHMKNVLILGAGGQIARHVINQLADKQTIKQTLFAR-----QPA--- 59
Query: 162 ARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNI 221
+ I+ GD+ + L + V +
Sbjct: 60 -KIHKPYPTNSQIIMGDVLNHAALKQAMQGQ--DIVYANLTGEDLDIQAN---------- 106
Query: 222 AGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEI 280
+++ K+ + + +++ S +Y +VP + + +
Sbjct: 107 ----SVIAAMKACDVK-RLIFVLSLGIYD---EVPGKFVEWNNAVIGEPLKPFRRAADA 157
|
| >2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase reductase, NADPH, dihydroquercetin, rossmann fold, oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera} PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A* Length = 337 | Back alignment and structure |
|---|
Score = 46.1 bits (110), Expect = 1e-05
Identities = 46/184 (25%), Positives = 80/184 (43%), Gaps = 32/184 (17%)
Query: 117 NGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQ----KHQV 172
TV VTGA+GF+GS + L +RG V + DP+ + + LL + +
Sbjct: 4 QSETVCVTGASGFIGSWLVMRLLERGYTVRA-----TVRDPTNVKKVKHLLDLPKAETHL 58
Query: 173 FIVEGDLNDAPLLTKLFD--VVPFTHVLHLAAQAGVRYAMQNPQSYV---ASNIAGFVNL 227
+ + DL D FD + T V H+A + + ++P++ V I G + +
Sbjct: 59 TLWKADLADE----GSFDEAIKGCTGVFHVA--TPMDFESKDPENEVIKPT--IEGMLGI 110
Query: 228 LEVCKSVNPQPSIVWASS-SSVYGLNTQVP-FSESHRTD--------QPASLYAATKKAG 277
++ C + +V+ SS +V Q+P + ES +D A +Y +K
Sbjct: 111 MKSCAAAKTVRRLVFTSSAGTVNIQEHQLPVYDESCWSDMEFCRAKKMTAWMYFVSKTLA 170
Query: 278 EEIA 281
E+ A
Sbjct: 171 EQAA 174
|
| >3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri} Length = 321 | Back alignment and structure |
|---|
Score = 45.7 bits (108), Expect = 2e-05
Identities = 34/332 (10%), Positives = 83/332 (25%), Gaps = 58/332 (17%)
Query: 120 TVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDL 179
+++ G G++G A + ++ + V I+EG++
Sbjct: 6 KIIIYGGTGYIGKFMVRASLSFSHPTFIYARPLTPDSTPSSVQLREEFRSMGVTIIEGEM 65
Query: 180 NDAPLLTKLFD----VVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVN 235
+ + + V+ +++Q ++++ K+
Sbjct: 66 EEHEKMVSVLKQVDIVISALPFPMISSQ---------------------IHIINAIKAAG 104
Query: 236 PQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIYGLALTGL 295
+ S +G + + P K+ Y
Sbjct: 105 NIKRFL----PSDFGCEE-----DRIKPLPPFESVLEKKRIIRRAIEAAALPYTYVSANC 155
Query: 296 RFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGATGS 355
F + + + + I +Y E Y +D+ K +
Sbjct: 156 -FGAYFVNYL------LHPSPHPNRNDDIVIY---GTGETKFVLNYEEDIAKYTIKVACD 205
Query: 356 GGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRNGDVPYTHANVSL 415
R N + L+S+ E KK + +
Sbjct: 206 PRCCNRIVIYRPP--KNI--ISQNELISLWEAKSGLSFKKVHM----------PDEQLVR 251
Query: 416 AYKDFGYKPTTDLAAGLRKFVKWYVSYYGIQP 447
++ ++ FVK + Y ++
Sbjct: 252 LSQELPQPQNIPVSILHSIFVKGDLMSYEMRK 283
|
| >1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A* Length = 206 | Back alignment and structure |
|---|
Score = 44.6 bits (106), Expect = 2e-05
Identities = 27/165 (16%), Positives = 44/165 (26%), Gaps = 33/165 (20%)
Query: 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGD 178
+ + GA G G + G V L D S R +V GD
Sbjct: 4 KKIAIFGATGQTGLTTLAQAVQAGYEVTVL-----VRDSS----RLPSEGPRPAHVVVGD 54
Query: 179 LNDAPLLTKLF---DVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVN 235
+ A + K D V G R + G N++ K+
Sbjct: 55 VLQAADVDKTVAGQDAVIVL--------LGTRNDLSPTTVMS----EGARNIVAAMKAHG 102
Query: 236 PQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEI 280
+V +S+ + T+VP ++
Sbjct: 103 V-DKVVACTSAFLLWDPTKVPPRLQA--------VTDDHIRMHKV 138
|
| >2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa} Length = 307 | Back alignment and structure |
|---|
Score = 45.3 bits (107), Expect = 2e-05
Identities = 46/292 (15%), Positives = 83/292 (28%), Gaps = 65/292 (22%)
Query: 120 TVLVTGAAGFVGSHCSLALKKRGDGVLGL-DNFNSYYDPSLKRARQKLLQKHQVFIVEGD 178
+L+ G G +G H A K G+ L + +P K Q V ++EGD
Sbjct: 4 KILILGPTGAIGRHIVWASIKAGNPTYALVRKTITAANPETKEELIDNYQSLGVILLEGD 63
Query: 179 LNDAPLLTKLF---DVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVN 235
+ND L K D+V + A + Q V +++ K
Sbjct: 64 INDHETLVKAIKQVDIV-------ICAAGRLLIEDQ-------------VKIIKAIKEAG 103
Query: 236 PQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEE------IAHTY---NH 286
S +GL+ + H +P K + + +TY +
Sbjct: 104 NVKKFF----PSEFGLDV-----DRHDAVEPVRQVFEEKASIRRVIEAEGVPYTYLCCHA 154
Query: 287 IYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVV 346
G L L P + + D V + DV
Sbjct: 155 FTGYFLRNLAQLDATDPPRD----------------KVVIL---GDGNVKGAYVTEADVG 195
Query: 347 KGCVGATGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVI 398
+ A +R + + ++++ E + +K +
Sbjct: 196 TFTIRAANDPNTLNKAVHIR----LPKNYLTQNEVIALWEKKIGKTLEKTYV 243
|
| >2p4h_X Vestitone reductase; NADPH-dependent reductase, isoflavonoid, plant protein; 1.40A {Medicago sativa} Length = 322 | Back alignment and structure |
|---|
Score = 44.5 bits (106), Expect = 3e-05
Identities = 37/183 (20%), Positives = 64/183 (34%), Gaps = 35/183 (19%)
Query: 120 TVLVTGAAGFVGSHCSLALKKRGDGVLG------LDNFNSYYDPSLKRARQKLLQKHQVF 173
V VTG GF+GS +L + G V + + +L A +KL
Sbjct: 3 RVCVTGGTGFLGSWIIKSLLENGYSVNTTIRADPERKRDVSFLTNLPGASEKL------H 56
Query: 174 IVEGDLNDAPLLTKLFD--VVPFTHVLHLAAQAGVRYAMQNPQSYV---ASNIAGFVNLL 228
DL++ F + + H A + + +A+ P+ V + G + +L
Sbjct: 57 FFNADLSNP----DSFAAAIEGCVGIFHTA--SPIDFAVSEPEEIVTKRT--VDGALGIL 108
Query: 229 EVCKSVNPQPSIVWASS-SSVYGLNTQ-VPFSESHRTD--------QPASLYAATKKAGE 278
+ C + ++ SS S+V ES +D YA +K E
Sbjct: 109 KACVNSKTVKRFIYTSSGSAVSFNGKDKDVLDESDWSDVDLLRSVKPFGWNYAVSKTLAE 168
Query: 279 EIA 281
+
Sbjct: 169 KAV 171
|
| >1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A* Length = 253 | Back alignment and structure |
|---|
Score = 44.1 bits (104), Expect = 5e-05
Identities = 44/247 (17%), Positives = 74/247 (29%), Gaps = 49/247 (19%)
Query: 119 MTVLVTGAAGFVGSHCSLALKKRGDG--VLGLDNFNSYYDPSLKRARQKLLQKHQVFIVE 176
TVLVTGA+G G LK+ D GL ++ A+ K + +
Sbjct: 5 PTVLVTGASGRTGQIVYKKLKEGSDKFVAKGL----------VRSAQGKEKIGGEADVFI 54
Query: 177 GDLNDAPLLTKLF---DVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGF--------V 225
GD+ DA + F D + + G ++ +
Sbjct: 55 GDITDADSINPAFQGIDALVILTSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQK 114
Query: 226 NLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYN 285
N ++ K + IV S + P + K+ E+
Sbjct: 115 NQIDAAKVAGVKH-IVVVGS-----MGGTNP--DHPLNKLGNGNILVWKRKAEQY----- 161
Query: 286 HIYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDV 345
LA +G +T+ G D + + + T+ V R DV
Sbjct: 162 ----LADSGTP-YTIIRAGGLLDKEGGVRELLVGKDDELLQTDTK---TVPR-----ADV 208
Query: 346 VKGCVGA 352
+ C+ A
Sbjct: 209 AEVCIQA 215
|
| >3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics, infectious diseases, bacillus anthracis STR. AMES, rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus anthracis} Length = 287 | Back alignment and structure |
|---|
Score = 43.3 bits (103), Expect = 9e-05
Identities = 36/192 (18%), Positives = 68/192 (35%), Gaps = 39/192 (20%)
Query: 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGD 178
V++TGA G +G L + D ++ L D
Sbjct: 6 ERVIITGANGQLGKQLQEELNPEEYDIYPFD-------------KKLL-----------D 41
Query: 179 LNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQP 238
+ + + ++ + ++H AA V A + N G N+ + V +
Sbjct: 42 ITNISQVQQVVQEIRPHIIIHCAAYTKVDQAEKERDLAYVINAIGARNVAVASQLVGAK- 100
Query: 239 SIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEE--IAHTYNHIYGLALTGLR 296
+V+ S+ V+ + + E H P ++Y A+K AGE+ + +R
Sbjct: 101 -LVYISTDYVFQGDRPEGYDEFHNPA-PINIYGASKYAGEQFVKELHNKYFI------VR 152
Query: 297 FFT--VYGPWGR 306
T +YG +G
Sbjct: 153 --TSWLYGKYGN 162
|
| >1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A Length = 342 | Back alignment and structure |
|---|
Score = 43.0 bits (102), Expect = 1e-04
Identities = 15/27 (55%), Positives = 16/27 (59%)
Query: 116 PNGMTVLVTGAAGFVGSHCSLALKKRG 142
P G VLVTGA GFV SH L + G
Sbjct: 9 PEGSLVLVTGANGFVASHVVEQLLEHG 35
|
| >3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi} Length = 118 | Back alignment and structure |
|---|
Score = 39.4 bits (92), Expect = 3e-04
Identities = 25/101 (24%), Positives = 34/101 (33%), Gaps = 21/101 (20%)
Query: 119 MTVLVTGAAGFVGSHCSLALKKRGD-GVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEG 177
+ V GA G +G + LK + V D+ A +L + V +
Sbjct: 6 WNICVVGA-GKIGQMIAALLKTSSNYSVTVADH---------DLAALAVLNRMGVATKQV 55
Query: 178 DLNDAPLLTKL---FDVV----PFTH---VLHLAAQAGVRY 208
D D L K FD V PF + A AG Y
Sbjct: 56 DAKDEAGLAKALGGFDAVISAAPFFLTPIIAKAAKAAGAHY 96
|
| >1e6u_A GDP-fucose synthetase; epimerase/reductase, SDR, RED; HET: NAP; 1.45A {Escherichia coli} SCOP: c.2.1.2 PDB: 1e7q_A* 1bsv_A* 1fxs_A* 1gfs_A 1e7s_A* 1bws_A* 1e7r_A* Length = 321 | Back alignment and structure |
|---|
Score = 41.4 bits (98), Expect = 3e-04
Identities = 72/355 (20%), Positives = 121/355 (34%), Gaps = 80/355 (22%)
Query: 121 VLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLN 180
V + G G VGS L++RGD L + R R +L +L
Sbjct: 6 VFIAGHRGMVGSAIRRQLEQRGDVEL------------VLRTRDEL-----------NLL 42
Query: 181 DAPLLTKLFDVVPFTHVLHLAAQAGVRYA-MQNPQSYVASNIAGFVNLLEVCKSVNPQPS 239
D+ + F V AA+ G A P ++ N+ N++ +
Sbjct: 43 DSRAVHDFFASERIDQVYLAAAKVGGIVANNTYPADFIYQNMMIESNIIHAAHQNDVN-K 101
Query: 240 IVWASSSSVYGLNTQVPFSESH-------RTDQPASLYAATKKAGEEIAHTYNHIYGLAL 292
+++ SS +Y + P +ES T++P YA K AG ++ +YN Y
Sbjct: 102 LLFLGSSCIYPKLAKQPMAESELLQGTLEPTNEP---YAIAKIAGIKLCESYNRQY---- 154
Query: 293 TGLRFFTV-----YGPWGR---------PDMAYFFFTKDILQGKTIDVYKTQDDREVARD 338
G + +V YGP P + F + + V+ + R+
Sbjct: 155 -GRDYRSVMPTNLYGPHDNFHPSNSHVIPALLRRFHEATAQKAPDVVVWGSGTPM---RE 210
Query: 339 FTYIDDVVKGCV---GATGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKK 395
F ++DD+ + + L N+G G +I E L K
Sbjct: 211 FLHVDDMAAASIHVMELAHEVWLENTQPMLSHINVG------TGVDCTIRE--LAQTIAK 262
Query: 396 HV-----IR----MPRNGDVPYTHANVSLAYKDFGYKPTTDLAAGLRKFVKWYVS 441
V + P +G P +V+ G+ L AGL +W++
Sbjct: 263 VVGYKGRVVFDASKP-DG-TPRKLLDVTRL-HQLGWYHEISLEAGLASTYQWFLE 314
|
| >3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp} Length = 219 | Back alignment and structure |
|---|
Score = 40.8 bits (96), Expect = 4e-04
Identities = 23/165 (13%), Positives = 52/165 (31%), Gaps = 34/165 (20%)
Query: 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGD 178
M + + G+ G VG +L + R +++ Q + V V D
Sbjct: 1 MKIFIVGSTGRVGKSLLKSLSTTDYQIYA-----------GARKVEQVPQYNNVKAVHFD 49
Query: 179 LN-DAPLLTKLF---DVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSV 234
++ + K D + +G +S + ++ G V L++ +
Sbjct: 50 VDWTPEEMAKQLHGMDAIINV--------SGSG-----GKSLLKVDLYGAVKLMQAAEKA 96
Query: 235 NPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEE 279
+ I+ S+++ L + + Y K +
Sbjct: 97 EVKRFIL---LSTIFSLQPEKWIGAGFDALKD---YYIAKHFADL 135
|
| >3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp} Length = 289 | Back alignment and structure |
|---|
Score = 41.1 bits (97), Expect = 4e-04
Identities = 14/107 (13%), Positives = 36/107 (33%), Gaps = 26/107 (24%)
Query: 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGD 178
M +++TGA G +G+H + + + + + +V + + D
Sbjct: 1 MNIMLTGATGHLGTHITNQAIANHIDHFHI----GVRNV----EKVPDDWRGKVSVRQLD 52
Query: 179 LNDAPLLTKLFD------------------VVPFTHVLHLAAQAGVR 207
+ + + F + ++++ A Q+GV
Sbjct: 53 YFNQESMVEAFKGMDTVVFIPSIIHPSFKRIPEVENLVYAAKQSGVA 99
|
| >1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A* Length = 352 | Back alignment and structure |
|---|
Score = 41.3 bits (97), Expect = 4e-04
Identities = 27/144 (18%), Positives = 41/144 (28%), Gaps = 21/144 (14%)
Query: 120 TVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDL 179
T+ V GA G G+ G V + ++L V + +G L
Sbjct: 7 TIAVVGATGRQGASLIRVAAAVGHHVRAQVH-----SLK-GLIAEELQAIPNVTLFQGPL 60
Query: 180 NDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPS 239
+ L G A N S IA +L + K
Sbjct: 61 LNNVPLMD-------------TLFEGAHLAFINTTSQAGDEIAIGKDLADAAKRAGTIQH 107
Query: 240 IVWAS--SSSVYGLNTQVPFSESH 261
+++S S+YG VP
Sbjct: 108 YIYSSMPDHSLYGPWPAVPMWAPK 131
|
| >2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D Length = 287 | Back alignment and structure |
|---|
Score = 40.3 bits (95), Expect = 7e-04
Identities = 22/110 (20%), Positives = 37/110 (33%), Gaps = 29/110 (26%)
Query: 119 MTVLVTGAAGFVGSHCSLALKKRGDG--VLGLDNFNSYYDPSLKRARQKLLQKHQVFIVE 176
++ VTGA G +G L K+ ++ + + + L V +
Sbjct: 1 FSIAVTGATGQLGGLVIQHLLKKVPASQIIAI-----VRNV----EKASTLADQGVEVRH 51
Query: 177 GDLNDAPLLTKLFD------------------VVPFTHVLHLAAQAGVRY 208
GD N L K F +V +V+ A AGV++
Sbjct: 52 GDYNQPESLQKAFAGVSKLLFISGPHYDNTLLIVQHANVVKAARDAGVKH 101
|
| >3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum} Length = 516 | Back alignment and structure |
|---|
Score = 40.8 bits (96), Expect = 8e-04
Identities = 12/41 (29%), Positives = 21/41 (51%)
Query: 108 RHSATPRRPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGL 148
++T + +TV +TG+ G VG + L+ G V+ L
Sbjct: 137 SRTSTLFDGSPLTVAITGSRGLVGRALTAQLQTGGHEVIQL 177
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 469 | |||
| 3ruf_A | 351 | WBGU; rossmann fold, UDP-hexose 4-epimerase, isome | 100.0 | |
| 4egb_A | 346 | DTDP-glucose 4,6-dehydratase; rhamnose pathway, ce | 100.0 | |
| 3enk_A | 341 | UDP-glucose 4-epimerase; seattle structural genomi | 100.0 | |
| 3m2p_A | 311 | UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J | 100.0 | |
| 1sb8_A | 352 | WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN | 100.0 | |
| 3ko8_A | 312 | NAD-dependent epimerase/dehydratase; isomerase, UD | 100.0 | |
| 2pk3_A | 321 | GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, shor | 100.0 | |
| 2hun_A | 336 | 336AA long hypothetical DTDP-glucose 4,6-dehydrat; | 100.0 | |
| 3slg_A | 372 | PBGP3 protein; structural genomics, seattle struct | 100.0 | |
| 3ehe_A | 313 | UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, | 100.0 | |
| 4id9_A | 347 | Short-chain dehydrogenase/reductase; putative dehy | 100.0 | |
| 1r6d_A | 337 | TDP-glucose-4,6-dehydratase; rossmann fold, short- | 100.0 | |
| 1rpn_A | 335 | GDP-mannose 4,6-dehydratase; short-chain dehydroge | 100.0 | |
| 4b8w_A | 319 | GDP-L-fucose synthase; oxidoreductase; HET: NAP GD | 100.0 | |
| 2c20_A | 330 | UDP-glucose 4-epimerase; carbohydrate metabolism, | 100.0 | |
| 1orr_A | 347 | CDP-tyvelose-2-epimerase; rossmann fold, short-cha | 100.0 | |
| 1rkx_A | 357 | CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; | 100.0 | |
| 1ek6_A | 348 | UDP-galactose 4-epimerase; short-chain dehydrogena | 100.0 | |
| 3sxp_A | 362 | ADP-L-glycero-D-mannoheptose-6-epimerase; rossman | 100.0 | |
| 1oc2_A | 348 | DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnos | 100.0 | |
| 1i24_A | 404 | Sulfolipid biosynthesis protein SQD1; SDR, short-c | 100.0 | |
| 2p5y_A | 311 | UDP-glucose 4-epimerase; TTHA0591, structural geno | 100.0 | |
| 2q1s_A | 377 | Putative nucleotide sugar epimerase/ dehydratase; | 100.0 | |
| 1gy8_A | 397 | UDP-galactose 4-epimerase; oxidoreductase; HET: NA | 100.0 | |
| 1udb_A | 338 | Epimerase, UDP-galactose-4-epimerase; isomerase; H | 100.0 | |
| 2bll_A | 345 | Protein YFBG; decarboxylase, short chain dehydroge | 100.0 | |
| 2z1m_A | 345 | GDP-D-mannose dehydratase; short-chain dehydrogena | 100.0 | |
| 1kew_A | 361 | RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fo | 100.0 | |
| 1e6u_A | 321 | GDP-fucose synthetase; epimerase/reductase, SDR, R | 100.0 | |
| 2c5a_A | 379 | GDP-mannose-3', 5'-epimerase; short chain dehydrat | 100.0 | |
| 3vps_A | 321 | TUNA, NAD-dependent epimerase/dehydratase; tunicam | 100.0 | |
| 1db3_A | 372 | GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lya | 100.0 | |
| 1t2a_A | 375 | GDP-mannose 4,6 dehydratase; structural genomics c | 100.0 | |
| 2b69_A | 343 | UDP-glucuronate decarboxylase 1; UDP-glucoronic ac | 100.0 | |
| 3sc6_A | 287 | DTDP-4-dehydrorhamnose reductase; RFBD, structural | 100.0 | |
| 1n7h_A | 381 | GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, | 100.0 | |
| 2x6t_A | 357 | ADP-L-glycero-D-manno-heptose-6-epimerase; isomera | 100.0 | |
| 2x4g_A | 342 | Nucleoside-diphosphate-sugar epimerase; isomerase; | 100.0 | |
| 1n2s_A | 299 | DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold | 100.0 | |
| 2yy7_A | 312 | L-threonine dehydrogenase; thermolabIle, flavobact | 100.0 | |
| 1eq2_A | 310 | ADP-L-glycero-D-mannoheptose 6-epimerase; N-termin | 100.0 | |
| 1vl0_A | 292 | DTDP-4-dehydrorhamnose reductase, RFBD ortholog; s | 100.0 | |
| 2pzm_A | 330 | Putative nucleotide sugar epimerase/ dehydratase; | 100.0 | |
| 2q1w_A | 333 | Putative nucleotide sugar epimerase/ dehydratase; | 100.0 | |
| 3gpi_A | 286 | NAD-dependent epimerase/dehydratase; structural ge | 100.0 | |
| 3ajr_A | 317 | NDP-sugar epimerase; L-threonine dehydrogenase, L- | 100.0 | |
| 1z7e_A | 660 | Protein aRNA; rossmann fold, OB-like fold, hydrola | 100.0 | |
| 1z45_A | 699 | GAL10 bifunctional protein; epimerase, mutarotase, | 100.0 | |
| 2ydy_A | 315 | Methionine adenosyltransferase 2 subunit beta; oxi | 100.0 | |
| 2hrz_A | 342 | AGR_C_4963P, nucleoside-diphosphate-sugar epimeras | 100.0 | |
| 2v6g_A | 364 | Progesterone 5-beta-reductase; tyrosine-dependent | 100.0 | |
| 3ius_A | 286 | Uncharacterized conserved protein; APC63810, silic | 100.0 | |
| 1y1p_A | 342 | ARII, aldehyde reductase II; rossmann fold, short | 100.0 | |
| 2p4h_X | 322 | Vestitone reductase; NADPH-dependent reductase, is | 100.0 | |
| 2c29_D | 337 | Dihydroflavonol 4-reductase; flavonoids, short deh | 100.0 | |
| 2rh8_A | 338 | Anthocyanidin reductase; flavonoids, rossmann fold | 100.0 | |
| 2ggs_A | 273 | 273AA long hypothetical DTDP-4-dehydrorhamnose red | 100.0 | |
| 4b4o_A | 298 | Epimerase family protein SDR39U1; isomerase; HET: | 100.0 | |
| 3oh8_A | 516 | Nucleoside-diphosphate sugar epimerase (SULA FAMI; | 100.0 | |
| 4f6c_A | 427 | AUSA reductase domain protein; thioester reductase | 100.0 | |
| 2jl1_A | 287 | Triphenylmethane reductase; oxidoreductase, biorem | 100.0 | |
| 4f6l_B | 508 | AUSA reductase domain protein; thioester reductase | 100.0 | |
| 2gn4_A | 344 | FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann | 100.0 | |
| 4dqv_A | 478 | Probable peptide synthetase NRP (peptide synthase; | 100.0 | |
| 3nzo_A | 399 | UDP-N-acetylglucosamine 4,6-dehydratase; structura | 100.0 | |
| 2zcu_A | 286 | Uncharacterized oxidoreductase YTFG; alpha-beta sa | 100.0 | |
| 3st7_A | 369 | Capsular polysaccharide synthesis enzyme CAP5F; ro | 100.0 | |
| 3ay3_A | 267 | NAD-dependent epimerase/dehydratase; glucuronic ac | 100.0 | |
| 3dhn_A | 227 | NAD-dependent epimerase/dehydratase; reductase, PF | 100.0 | |
| 3i6i_A | 346 | Putative leucoanthocyanidin reductase 1; rossmann | 99.98 | |
| 3rft_A | 267 | Uronate dehydrogenase; apoenzyme, rossmann fold, N | 99.97 | |
| 3dqp_A | 219 | Oxidoreductase YLBE; alpha-beta protein., structur | 99.97 | |
| 3e8x_A | 236 | Putative NAD-dependent epimerase/dehydratase; stru | 99.97 | |
| 3e48_A | 289 | Putative nucleoside-diphosphate-sugar epimerase; a | 99.97 | |
| 3h2s_A | 224 | Putative NADH-flavin reductase; Q03B84, NESG, LCR1 | 99.96 | |
| 3ew7_A | 221 | LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend | 99.96 | |
| 1xq6_A | 253 | Unknown protein; structural genomics, protein stru | 99.96 | |
| 2wm3_A | 299 | NMRA-like family domain containing protein 1; unkn | 99.96 | |
| 2a35_A | 215 | Hypothetical protein PA4017; alpha-beta-alpha sand | 99.95 | |
| 1qyd_A | 313 | Pinoresinol-lariciresinol reductase; NADPH-depende | 99.95 | |
| 1xgk_A | 352 | Nitrogen metabolite repression regulator NMRA; ros | 99.95 | |
| 2r6j_A | 318 | Eugenol synthase 1; phenylpropene, PIP reductase, | 99.95 | |
| 3c1o_A | 321 | Eugenol synthase; phenylpropene, PIP reductase, sh | 99.95 | |
| 2gas_A | 307 | Isoflavone reductase; NADPH-dependent reductase, o | 99.95 | |
| 2bgk_A | 278 | Rhizome secoisolariciresinol dehydrogenase; oxidor | 99.95 | |
| 1qyc_A | 308 | Phenylcoumaran benzylic ether reductase PT1; NADPH | 99.95 | |
| 1hdo_A | 206 | Biliverdin IX beta reductase; foetal metabolism, H | 99.94 | |
| 2bka_A | 242 | CC3, TAT-interacting protein TIP30; NADPH, PEG600, | 99.94 | |
| 3m1a_A | 281 | Putative dehydrogenase; short, PSI, MCSG, structur | 99.94 | |
| 1cyd_A | 244 | Carbonyl reductase; short-chain dehydrogenase, oxi | 99.94 | |
| 3svt_A | 281 | Short-chain type dehydrogenase/reductase; ssgcid, | 99.94 | |
| 1fmc_A | 255 | 7 alpha-hydroxysteroid dehydrogenase; short-chain | 99.94 | |
| 1w6u_A | 302 | 2,4-dienoyl-COA reductase, mitochondrial precursor | 99.94 | |
| 1spx_A | 278 | Short-chain reductase family member (5L265); paral | 99.94 | |
| 4e6p_A | 259 | Probable sorbitol dehydrogenase (L-iditol 2-dehyd; | 99.93 | |
| 3awd_A | 260 | GOX2181, putative polyol dehydrogenase; oxidoreduc | 99.93 | |
| 3d3w_A | 244 | L-xylulose reductase; uronate cycle, short-chain d | 99.93 | |
| 3tzq_B | 271 | Short-chain type dehydrogenase/reductase; ssgcid, | 99.93 | |
| 2dkn_A | 255 | 3-alpha-hydroxysteroid dehydrogenase; oxidoreducta | 99.93 | |
| 3un1_A | 260 | Probable oxidoreductase; structural genomics, PSI- | 99.93 | |
| 3ai3_A | 263 | NADPH-sorbose reductase; rossmann-fold, NADPH-depe | 99.93 | |
| 3s55_A | 281 | Putative short-chain dehydrogenase/reductase; stru | 99.93 | |
| 2cfc_A | 250 | 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidor | 99.92 | |
| 3osu_A | 246 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 99.92 | |
| 2pd6_A | 264 | Estradiol 17-beta-dehydrogenase 8; short-chain deh | 99.92 | |
| 1xq1_A | 266 | Putative tropinone reducatse; structural genomics, | 99.92 | |
| 2wyu_A | 261 | Enoyl-[acyl carrier protein] reductase; oxidoreduc | 99.92 | |
| 1ja9_A | 274 | 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p | 99.92 | |
| 3pgx_A | 280 | Carveol dehydrogenase; structural genomics, seattl | 99.92 | |
| 3sx2_A | 278 | Putative 3-ketoacyl-(acyl-carrier-protein) reduct; | 99.92 | |
| 3tpc_A | 257 | Short chain alcohol dehydrogenase-related dehydro; | 99.92 | |
| 3v2h_A | 281 | D-beta-hydroxybutyrate dehydrogenase; structural g | 99.92 | |
| 1qsg_A | 265 | Enoyl-[acyl-carrier-protein] reductase; enoyl redu | 99.92 | |
| 2wsb_A | 254 | Galactitol dehydrogenase; oxidoreductase, SDR, ros | 99.92 | |
| 2zat_A | 260 | Dehydrogenase/reductase SDR family member 4; alpha | 99.92 | |
| 3pk0_A | 262 | Short-chain dehydrogenase/reductase SDR; ssgcid, s | 99.92 | |
| 3afn_B | 258 | Carbonyl reductase; alpha/beta/alpha, rossmann-fol | 99.92 | |
| 3oid_A | 258 | Enoyl-[acyl-carrier-protein] reductase [NADPH]; fa | 99.92 | |
| 2ae2_A | 260 | Protein (tropinone reductase-II); oxidoreductase, | 99.92 | |
| 3pxx_A | 287 | Carveol dehydrogenase; structural genomics, seattl | 99.92 | |
| 3gaf_A | 256 | 7-alpha-hydroxysteroid dehydrogenase; seattle stru | 99.91 | |
| 2d1y_A | 256 | Hypothetical protein TT0321; strucrtural genomics, | 99.91 | |
| 1uay_A | 242 | Type II 3-hydroxyacyl-COA dehydrogenase; beta oxid | 99.91 | |
| 3rih_A | 293 | Short chain dehydrogenase or reductase; structural | 99.91 | |
| 3imf_A | 257 | Short chain dehydrogenase; structural genomics, in | 99.91 | |
| 3f9i_A | 249 | 3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto | 99.91 | |
| 3i4f_A | 264 | 3-oxoacyl-[acyl-carrier protein] reductase; struct | 99.91 | |
| 2p91_A | 285 | Enoyl-[acyl-carrier-protein] reductase [NADH]; NAD | 99.91 | |
| 2fwm_X | 250 | 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; e | 99.91 | |
| 3gem_A | 260 | Short chain dehydrogenase; structural genomics, AP | 99.91 | |
| 2pnf_A | 248 | 3-oxoacyl-[acyl-carrier-protein] reductase; short | 99.91 | |
| 3ak4_A | 263 | NADH-dependent quinuclidinone reductase; SDR, (R)- | 99.91 | |
| 1gee_A | 261 | Glucose 1-dehydrogenase; short-chain dehydrogenase | 99.91 | |
| 3d7l_A | 202 | LIN1944 protein; APC89317, structural genomics, PS | 99.91 | |
| 3uf0_A | 273 | Short-chain dehydrogenase/reductase SDR; gluconate | 99.91 | |
| 3ek2_A | 271 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 99.91 | |
| 3qiv_A | 253 | Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR | 99.91 | |
| 3lyl_A | 247 | 3-oxoacyl-(acyl-carrier-protein) reductase; alpha | 99.91 | |
| 2hq1_A | 247 | Glucose/ribitol dehydrogenase; CTH-1438, structura | 99.91 | |
| 1ae1_A | 273 | Tropinone reductase-I; oxidoreductase, tropane alk | 99.91 | |
| 3k31_A | 296 | Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI | 99.91 | |
| 4eso_A | 255 | Putative oxidoreductase; NADP, structural genomics | 99.91 | |
| 1mxh_A | 276 | Pteridine reductase 2; SDR topology, protein-subst | 99.91 | |
| 3ijr_A | 291 | Oxidoreductase, short chain dehydrogenase/reducta; | 99.91 | |
| 3vtz_A | 269 | Glucose 1-dehydrogenase; rossmann fold, oxidoreduc | 99.91 | |
| 1h5q_A | 265 | NADP-dependent mannitol dehydrogenase; oxidoreduct | 99.91 | |
| 1iy8_A | 267 | Levodione reductase; oxidoreductase; HET: NAD; 1.6 | 99.91 | |
| 2q2v_A | 255 | Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidore | 99.91 | |
| 2ag5_A | 246 | DHRS6, dehydrogenase/reductase (SDR family) member | 99.91 | |
| 3ucx_A | 264 | Short chain dehydrogenase; ssgcid, seattle structu | 99.91 | |
| 2rhc_B | 277 | Actinorhodin polyketide ketoreductase; oxidoreduct | 99.91 | |
| 4egf_A | 266 | L-xylulose reductase; structural genomics, ssgcid, | 99.91 | |
| 1x1t_A | 260 | D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, S | 99.91 | |
| 2o23_A | 265 | HADH2 protein; HSD17B10, schad, ERAB, type II HADH | 99.91 | |
| 4dqx_A | 277 | Probable oxidoreductase protein; structural genomi | 99.91 | |
| 1zk4_A | 251 | R-specific alcohol dehydrogenase; short chain redu | 99.91 | |
| 3qvo_A | 236 | NMRA family protein; structural genomics, PSI-biol | 99.9 | |
| 3tox_A | 280 | Short chain dehydrogenase; structural genomics, PS | 99.9 | |
| 2ph3_A | 245 | 3-oxoacyl-[acyl carrier protein] reductase; TTHA04 | 99.9 | |
| 2yut_A | 207 | Putative short-chain oxidoreductase; alpha and bet | 99.9 | |
| 3qlj_A | 322 | Short chain dehydrogenase; structural genomics, se | 99.9 | |
| 3gvc_A | 277 | Oxidoreductase, probable short-chain type dehydrog | 99.9 | |
| 2pd4_A | 275 | Enoyl-[acyl-carrier-protein] reductase [NADH]; ant | 99.9 | |
| 3o38_A | 266 | Short chain dehydrogenase; tuberculosis, ortholog | 99.9 | |
| 1nff_A | 260 | Putative oxidoreductase RV2002; directed evolution | 99.9 | |
| 3op4_A | 248 | 3-oxoacyl-[acyl-carrier protein] reductase; 3-keto | 99.9 | |
| 3rd5_A | 291 | Mypaa.01249.C; ssgcid, structural genomics, seattl | 99.9 | |
| 3r6d_A | 221 | NAD-dependent epimerase/dehydratase; structural ge | 99.9 | |
| 1yxm_A | 303 | Pecra, peroxisomal trans 2-enoyl COA reductase; pe | 99.9 | |
| 4ibo_A | 271 | Gluconate dehydrogenase; enzyme function initiativ | 99.9 | |
| 1hdc_A | 254 | 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxi | 99.9 | |
| 3grk_A | 293 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 99.9 | |
| 2z1n_A | 260 | Dehydrogenase; reductase, SDR, oxidoreductase; 1.8 | 99.9 | |
| 3sju_A | 279 | Keto reductase; short-chain dehydrogenase, oxidore | 99.9 | |
| 1edo_A | 244 | Beta-keto acyl carrier protein reductase; nucleoti | 99.9 | |
| 2c07_A | 285 | 3-oxoacyl-(acyl-carrier protein) reductase; oxidor | 99.9 | |
| 4dmm_A | 269 | 3-oxoacyl-[acyl-carrier-protein] reductase; rossma | 99.9 | |
| 3grp_A | 266 | 3-oxoacyl-(acyl carrierprotein) reductase; structu | 99.9 | |
| 3uxy_A | 266 | Short-chain dehydrogenase/reductase SDR; structura | 99.9 | |
| 2dtx_A | 264 | Glucose 1-dehydrogenase related protein; rossmann | 99.9 | |
| 3nrc_A | 280 | Enoyl-[acyl-carrier-protein] reductase (NADH); ros | 99.9 | |
| 3ftp_A | 270 | 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid | 99.9 | |
| 4e3z_A | 272 | Putative oxidoreductase protein; PSI-biology, stru | 99.9 | |
| 2b4q_A | 276 | Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier | 99.9 | |
| 3r3s_A | 294 | Oxidoreductase; structural genomics, csgid, center | 99.9 | |
| 3dii_A | 247 | Short-chain dehydrogenase/reductase SDR; SCOR, ros | 99.9 | |
| 4da9_A | 280 | Short-chain dehydrogenase/reductase; structural ge | 99.9 | |
| 3tjr_A | 301 | Short chain dehydrogenase; structural genomics, se | 99.9 | |
| 3oig_A | 266 | Enoyl-[acyl-carrier-protein] reductase [NADH]; fat | 99.9 | |
| 2ew8_A | 249 | (S)-1-phenylethanol dehydrogenase; transferase; 2. | 99.9 | |
| 1xhl_A | 297 | Short-chain dehydrogenase/reductase family member | 99.9 | |
| 3n74_A | 261 | 3-ketoacyl-(acyl-carrier-protein) reductase; seatt | 99.9 | |
| 3edm_A | 259 | Short chain dehydrogenase; structural genomics, ox | 99.9 | |
| 3tsc_A | 277 | Putative oxidoreductase; structural genomics, seat | 99.9 | |
| 3ezl_A | 256 | Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA | 99.9 | |
| 3r1i_A | 276 | Short-chain type dehydrogenase/reductase; structur | 99.9 | |
| 3v8b_A | 283 | Putative dehydrogenase, possibly 3-oxoacyl-[acyl- | 99.9 | |
| 4fc7_A | 277 | Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman | 99.9 | |
| 2uvd_A | 246 | 3-oxoacyl-(acyl-carrier-protein) reductase; beta-k | 99.9 | |
| 2gdz_A | 267 | NAD+-dependent 15-hydroxyprostaglandin dehydrogen; | 99.9 | |
| 1vl8_A | 267 | Gluconate 5-dehydrogenase; TM0441, structural geno | 99.9 | |
| 3a28_C | 258 | L-2.3-butanediol dehydrogenase; chiral substrate r | 99.9 | |
| 3uve_A | 286 | Carveol dehydrogenase ((+)-trans-carveol dehydrog; | 99.9 | |
| 1sby_A | 254 | Alcohol dehydrogenase; ternary complex, NAD, trifl | 99.9 | |
| 1hxh_A | 253 | 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-b | 99.9 | |
| 4iiu_A | 267 | 3-oxoacyl-[acyl-carrier protein] reductase; struct | 99.9 | |
| 3ctm_A | 279 | Carbonyl reductase; alcohol dehydrogenase, short-c | 99.9 | |
| 3oec_A | 317 | Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; | 99.9 | |
| 3tl3_A | 257 | Short-chain type dehydrogenase/reductase; ssgcid, | 99.9 | |
| 3t7c_A | 299 | Carveol dehydrogenase; structural genomics, seattl | 99.89 | |
| 3ioy_A | 319 | Short-chain dehydrogenase/reductase SDR; structura | 99.89 | |
| 2bd0_A | 244 | Sepiapterin reductase; oxidoreductase; HET: NAP BI | 99.89 | |
| 2a4k_A | 263 | 3-oxoacyl-[acyl carrier protein] reductase; reduct | 99.89 | |
| 3cxt_A | 291 | Dehydrogenase with different specificities; rossma | 99.89 | |
| 1yo6_A | 250 | Putative carbonyl reductase sniffer; tyrosine-depe | 99.89 | |
| 3uce_A | 223 | Dehydrogenase; rossmann fold, oxidoreductase; HET: | 99.89 | |
| 1xkq_A | 280 | Short-chain reductase family member (5D234); parra | 99.89 | |
| 3is3_A | 270 | 17BETA-hydroxysteroid dehydrogenase; short chain d | 99.89 | |
| 4dyv_A | 272 | Short-chain dehydrogenase/reductase SDR; structura | 99.89 | |
| 1yde_A | 270 | Retinal dehydrogenase/reductase 3; oxidoreductase, | 99.89 | |
| 3rwb_A | 247 | TPLDH, pyridoxal 4-dehydrogenase; short chain dehy | 99.89 | |
| 3gk3_A | 269 | Acetoacetyl-COA reductase; acetoacetyl-CO reductas | 99.89 | |
| 4iin_A | 271 | 3-ketoacyl-acyl carrier protein reductase (FABG); | 99.89 | |
| 3f1l_A | 252 | Uncharacterized oxidoreductase YCIK; E. coli, NADP | 99.89 | |
| 3u9l_A | 324 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 99.89 | |
| 2ekp_A | 239 | 2-deoxy-D-gluconate 3-dehydrogenase; structural ge | 99.89 | |
| 2nm0_A | 253 | Probable 3-oxacyl-(acyl-carrier-protein) reductas; | 99.89 | |
| 1uls_A | 245 | Putative 3-oxoacyl-acyl carrier protein reductase; | 99.89 | |
| 1g0o_A | 283 | Trihydroxynaphthalene reductase; protein-NADPH-act | 99.89 | |
| 3v2g_A | 271 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 99.89 | |
| 3lf2_A | 265 | Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross | 99.89 | |
| 3t4x_A | 267 | Oxidoreductase, short chain dehydrogenase/reducta; | 99.89 | |
| 1geg_A | 256 | Acetoin reductase; SDR family, oxidoreductase; HET | 99.89 | |
| 3p19_A | 266 | BFPVVD8, putative blue fluorescent protein; rossma | 99.89 | |
| 3rkr_A | 262 | Short chain oxidoreductase; rossmann fold; HET: NA | 99.89 | |
| 1uzm_A | 247 | 3-oxoacyl-[acyl-carrier protein] reductase; beta-k | 99.89 | |
| 3h7a_A | 252 | Short chain dehydrogenase; oxidoreductase, PSI-2, | 99.89 | |
| 3tfo_A | 264 | Putative 3-oxoacyl-(acyl-carrier-protein) reducta; | 99.88 | |
| 2x9g_A | 288 | PTR1, pteridine reductase; short chain dehydrogena | 99.88 | |
| 4b79_A | 242 | PA4098, probable short-chain dehydrogenase; oxidor | 99.88 | |
| 4e4y_A | 244 | Short chain dehydrogenase family protein; structur | 99.88 | |
| 2ehd_A | 234 | Oxidoreductase, oxidoreductase, short-chain dehydr | 99.88 | |
| 3kzv_A | 254 | Uncharacterized oxidoreductase YIR035C; cytoplasmi | 99.88 | |
| 3ksu_A | 262 | 3-oxoacyl-acyl carrier protein reductase; structur | 99.88 | |
| 3orf_A | 251 | Dihydropteridine reductase; alpha-beta-alpha sandw | 99.88 | |
| 3rku_A | 287 | Oxidoreductase YMR226C; substrate fingerprint, sho | 99.88 | |
| 1o5i_A | 249 | 3-oxoacyl-(acyl carrier protein) reductase; TM1169 | 99.88 | |
| 3l77_A | 235 | Short-chain alcohol dehydrogenase; oxidoreductase; | 99.88 | |
| 3ppi_A | 281 | 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, de | 99.88 | |
| 1yb1_A | 272 | 17-beta-hydroxysteroid dehydrogenase type XI; shor | 99.88 | |
| 1xg5_A | 279 | ARPG836; short chain dehydrogenase, human, SGC, st | 99.88 | |
| 3gdg_A | 267 | Probable NADP-dependent mannitol dehydrogenase; ro | 99.88 | |
| 3icc_A | 255 | Putative 3-oxoacyl-(acyl carrier protein) reducta; | 99.88 | |
| 1sny_A | 267 | Sniffer CG10964-PA; alpha and beta protein, rossma | 99.88 | |
| 1fjh_A | 257 | 3alpha-hydroxysteroid dehydrogenase/carbonyl reduc | 99.88 | |
| 3asu_A | 248 | Short-chain dehydrogenase/reductase SDR; SDR famil | 99.88 | |
| 4imr_A | 275 | 3-oxoacyl-(acyl-carrier-protein) reductase; oxidor | 99.88 | |
| 2qhx_A | 328 | Pteridine reductase 1; oxidoreductase, short-chain | 99.88 | |
| 1ooe_A | 236 | Dihydropteridine reductase; structural genomics, P | 99.88 | |
| 3l6e_A | 235 | Oxidoreductase, short-chain dehydrogenase/reducta; | 99.88 | |
| 3u5t_A | 267 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 99.87 | |
| 1wma_A | 276 | Carbonyl reductase [NADPH] 1; oxidoreductase; HET: | 99.87 | |
| 3nyw_A | 250 | Putative oxidoreductase; fatty acid synthesis,3-ox | 99.87 | |
| 1zem_A | 262 | Xylitol dehydrogenase; rossmann fold, dinucleotide | 99.87 | |
| 1dhr_A | 241 | Dihydropteridine reductase; oxidoreductase(acting | 99.87 | |
| 2nwq_A | 272 | Probable short-chain dehydrogenase; oxidoreductase | 99.87 | |
| 4dry_A | 281 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 99.87 | |
| 4fn4_A | 254 | Short chain dehydrogenase; NADH-binding, rossmann | 99.87 | |
| 4hp8_A | 247 | 2-deoxy-D-gluconate 3-dehydrogenase; enzyme functi | 99.86 | |
| 1e7w_A | 291 | Pteridine reductase; dihydrofolate reductase, shor | 99.86 | |
| 3ged_A | 247 | Short-chain dehydrogenase/reductase SDR; SCOR, ros | 99.86 | |
| 3sc4_A | 285 | Short chain dehydrogenase (A0QTM2 homolog); ssgcid | 99.86 | |
| 4g81_D | 255 | Putative hexonate dehydrogenase; enzyme function i | 99.86 | |
| 3guy_A | 230 | Short-chain dehydrogenase/reductase SDR; structura | 99.86 | |
| 3kvo_A | 346 | Hydroxysteroid dehydrogenase-like protein 2; HSDL2 | 99.86 | |
| 3zv4_A | 281 | CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; ox | 99.86 | |
| 4fs3_A | 256 | Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; | 99.85 | |
| 3i1j_A | 247 | Oxidoreductase, short chain dehydrogenase/reducta; | 99.85 | |
| 4fgs_A | 273 | Probable dehydrogenase protein; PSI-biology, nysgr | 99.85 | |
| 4gkb_A | 258 | 3-oxoacyl-[acyl-carrier protein] reductase; putati | 99.85 | |
| 1xu9_A | 286 | Corticosteroid 11-beta-dehydrogenase, isozyme 1; h | 99.85 | |
| 1zmt_A | 254 | Haloalcohol dehalogenase HHEC; halohydrin dehaloge | 99.85 | |
| 2jah_A | 247 | Clavulanic acid dehydrogenase; short-chain dehydro | 99.85 | |
| 3e9n_A | 245 | Putative short-chain dehydrogenase/reductase; stru | 99.85 | |
| 3e03_A | 274 | Short chain dehydrogenase; structural genomics, PS | 99.84 | |
| 1oaa_A | 259 | Sepiapterin reductase; tetrahydrobiopterin, oxidor | 99.84 | |
| 2h7i_A | 269 | Enoyl-[acyl-carrier-protein] reductase [NADH]; oxi | 99.84 | |
| 3o26_A | 311 | Salutaridine reductase; short chain dehydrogenase/ | 99.83 | |
| 4h15_A | 261 | Short chain alcohol dehydrogenase-related dehydro; | 99.83 | |
| 2fr1_A | 486 | Erythromycin synthase, eryai; short chain dehydrog | 99.83 | |
| 3u0b_A | 454 | Oxidoreductase, short chain dehydrogenase/reducta | 99.82 | |
| 1jtv_A | 327 | 17 beta-hydroxysteroid dehydrogenase type 1; stero | 99.81 | |
| 1zmo_A | 244 | Halohydrin dehalogenase; haloalcohol dehalogenase, | 99.81 | |
| 2qq5_A | 260 | DHRS1, dehydrogenase/reductase SDR family member 1 | 99.81 | |
| 1gz6_A | 319 | Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MF | 99.81 | |
| 1d7o_A | 297 | Enoyl-[acyl-carrier protein] reductase (NADH) PRE; | 99.81 | |
| 2z5l_A | 511 | Tylkr1, tylactone synthase starter module and modu | 99.8 | |
| 3mje_A | 496 | AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1. | 99.76 | |
| 1y7t_A | 327 | Malate dehydrogenase; NAD-dependent-MDH-NADPH comp | 99.75 | |
| 3oml_A | 613 | GH14720P, peroxisomal multifunctional enzyme type | 99.74 | |
| 3qp9_A | 525 | Type I polyketide synthase pikaii; rossmann fold, | 99.73 | |
| 2ptg_A | 319 | Enoyl-acyl carrier reductase; apicomplexa, enoyl ( | 99.71 | |
| 2o2s_A | 315 | Enoyl-acyl carrier reductase; enoyl reductase, tri | 99.71 | |
| 3lt0_A | 329 | Enoyl-ACP reductase; triclosan, triclosan variant, | 99.7 | |
| 2et6_A | 604 | (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-ox | 99.6 | |
| 3zu3_A | 405 | Putative reductase YPO4104/Y4119/YP_4011; oxidored | 99.6 | |
| 2et6_A | 604 | (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-ox | 99.6 | |
| 3s8m_A | 422 | Enoyl-ACP reductase; rossmann fold, oxidoreductase | 99.55 | |
| 3slk_A | 795 | Polyketide synthase extender module 2; rossmann fo | 99.53 | |
| 2uv9_A | 1878 | Fatty acid synthase alpha subunits; fungal, dehydr | 99.52 | |
| 4eue_A | 418 | Putative reductase CA_C0462; TER, biofuel, synthet | 99.52 | |
| 2uv8_A | 1887 | Fatty acid synthase subunit alpha (FAS2); fatty ac | 99.5 | |
| 2pff_A | 1688 | Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl | 99.47 | |
| 2vz8_A | 2512 | Fatty acid synthase; transferase, phosphopantethei | 99.28 | |
| 3zen_D | 3089 | Fatty acid synthase; transferase, mycolic acid bio | 99.11 | |
| 3ic5_A | 118 | Putative saccharopine dehydrogenase; structural ge | 99.09 | |
| 1b8p_A | 329 | Protein (malate dehydrogenase); oxidoreductase; 1. | 99.08 | |
| 1smk_A | 326 | Malate dehydrogenase, glyoxysomal; tricarboxylic c | 98.87 | |
| 2hmt_A | 144 | YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane | 98.77 | |
| 1hye_A | 313 | L-lactate/malate dehydrogenase; nucleotide binding | 98.73 | |
| 4ggo_A | 401 | Trans-2-enoyl-COA reductase; rossmann fold, oxidor | 98.72 | |
| 1lu9_A | 287 | Methylene tetrahydromethanopterin dehydrogenase; a | 98.69 | |
| 1o6z_A | 303 | MDH, malate dehydrogenase; halophilic, ION-binding | 98.66 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 98.64 | |
| 1lss_A | 140 | TRK system potassium uptake protein TRKA homolog; | 98.51 | |
| 4ina_A | 405 | Saccharopine dehydrogenase; structural genomics, P | 98.5 | |
| 1ff9_A | 450 | Saccharopine reductase; lysine biosynthesis, alpha | 98.48 | |
| 1mld_A | 314 | Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D | 98.32 | |
| 3abi_A | 365 | Putative uncharacterized protein PH1688; L-lysine | 98.32 | |
| 1id1_A | 153 | Putative potassium channel protein; RCK domain, E. | 98.31 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 98.31 | |
| 2gk4_A | 232 | Conserved hypothetical protein; alpha-beta-alpha s | 98.25 | |
| 5mdh_A | 333 | Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH | 98.24 | |
| 3c85_A | 183 | Putative glutathione-regulated potassium-efflux S | 98.2 | |
| 1u7z_A | 226 | Coenzyme A biosynthesis bifunctional protein coabc | 98.13 | |
| 2axq_A | 467 | Saccharopine dehydrogenase; rossmann fold variant, | 98.13 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 98.13 | |
| 3fi9_A | 343 | Malate dehydrogenase; structural genomics, oxidore | 98.01 | |
| 1pqw_A | 198 | Polyketide synthase; rossmann fold, dimer, structu | 98.0 | |
| 3l4b_C | 218 | TRKA K+ channel protien TM1088B; potassium channel | 97.98 | |
| 2aef_A | 234 | Calcium-gated potassium channel MTHK; rossmann fol | 97.8 | |
| 3pqe_A | 326 | L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas | 97.77 | |
| 3l9w_A | 413 | Glutathione-regulated potassium-efflux system Pro | 97.72 | |
| 2hcy_A | 347 | Alcohol dehydrogenase 1; tetramer of asymmetric di | 97.66 | |
| 3vku_A | 326 | L-LDH, L-lactate dehydrogenase; rossmann fold, NAD | 97.64 | |
| 2z2v_A | 365 | Hypothetical protein PH1688; L-lysine dehydrogenas | 97.6 | |
| 3gvi_A | 324 | Malate dehydrogenase; NAD, oxidoreductase, tricarb | 97.48 | |
| 1oju_A | 294 | MDH, malate dehydrogenase; hyperthermophilic, oxid | 97.47 | |
| 3tnl_A | 315 | Shikimate dehydrogenase; structural genomics, cent | 97.43 | |
| 1v3u_A | 333 | Leukotriene B4 12- hydroxydehydrogenase/prostaglan | 97.42 | |
| 3hhp_A | 312 | Malate dehydrogenase; MDH, citric acid cycle, TCA | 97.42 | |
| 1dih_A | 273 | Dihydrodipicolinate reductase; oxidoreductase; HET | 97.42 | |
| 2eez_A | 369 | Alanine dehydrogenase; TTHA0216, structural genomi | 97.41 | |
| 3p7m_A | 321 | Malate dehydrogenase; putative dehydrogenase, enzy | 97.39 | |
| 2eih_A | 343 | Alcohol dehydrogenase; zinc ION binding protein, s | 97.39 | |
| 1y6j_A | 318 | L-lactate dehydrogenase; southeast collaboratory f | 97.39 | |
| 3d0o_A | 317 | L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly | 97.38 | |
| 3nep_X | 314 | Malate dehydrogenase; halophIle, molecular adpatat | 97.37 | |
| 4aj2_A | 331 | L-lactate dehydrogenase A chain; oxidoreductase-in | 97.35 | |
| 1lnq_A | 336 | MTHK channels, potassium channel related protein; | 97.32 | |
| 2zqz_A | 326 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ro | 97.31 | |
| 4g65_A | 461 | TRK system potassium uptake protein TRKA; structur | 97.28 | |
| 3tl2_A | 315 | Malate dehydrogenase; center for structural genomi | 97.27 | |
| 1jay_A | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma | 97.27 | |
| 3qwb_A | 334 | Probable quinone oxidoreductase; rossmann fold, qu | 97.26 | |
| 1jw9_B | 249 | Molybdopterin biosynthesis MOEB protein; MOEB: mod | 97.26 | |
| 1pzg_A | 331 | LDH, lactate dehydrogenase; apicomplexa, APAD, tet | 97.24 | |
| 1qor_A | 327 | Quinone oxidoreductase; HET: NAP; 2.20A {Escherich | 97.24 | |
| 1wly_A | 333 | CAAR, 2-haloacrylate reductase; NADPH-dependent ox | 97.22 | |
| 1ez4_A | 318 | Lactate dehydrogenase; rossmann fold, oxidoreducta | 97.22 | |
| 1ur5_A | 309 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 97.17 | |
| 1yb5_A | 351 | Quinone oxidoreductase; medium-chain dehydrogenase | 97.16 | |
| 2x0j_A | 294 | Malate dehydrogenase; oxidoreductase, hyperthermop | 97.15 | |
| 4h7p_A | 345 | Malate dehydrogenase; ssgcid, structural G seattle | 97.13 | |
| 2j3h_A | 345 | NADP-dependent oxidoreductase P1; double bond redu | 97.13 | |
| 2j8z_A | 354 | Quinone oxidoreductase; medium-chain dehydrogenase | 97.12 | |
| 3ldh_A | 330 | Lactate dehydrogenase; oxidoreductase, CHOH donor, | 97.08 | |
| 4b7c_A | 336 | Probable oxidoreductase; NADP cofactor, rossmann f | 97.06 | |
| 2xxj_A | 310 | L-LDH, L-lactate dehydrogenase; oxidoreductase, hy | 97.03 | |
| 1nyt_A | 271 | Shikimate 5-dehydrogenase; alpha/beta domains, WID | 97.02 | |
| 3gms_A | 340 | Putative NADPH:quinone reductase; structural genom | 97.01 | |
| 2v6b_A | 304 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ra | 96.99 | |
| 7mdh_A | 375 | Protein (malate dehydrogenase); chloroplastic mala | 96.97 | |
| 2zb4_A | 357 | Prostaglandin reductase 2; rossmann fold, alternat | 96.96 | |
| 3jyn_A | 325 | Quinone oxidoreductase; rossmann fold, protein-NAD | 96.95 | |
| 2c0c_A | 362 | Zinc binding alcohol dehydrogenase, domain contain | 96.93 | |
| 3t4e_A | 312 | Quinate/shikimate dehydrogenase; structural genomi | 96.92 | |
| 1p9o_A | 313 | Phosphopantothenoylcysteine synthetase; ligase; 2. | 96.9 | |
| 1ldn_A | 316 | L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA | 96.9 | |
| 1guz_A | 310 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 96.9 | |
| 3gxh_A | 157 | Putative phosphatase (DUF442); YP_001181608.1, str | 96.89 | |
| 4dup_A | 353 | Quinone oxidoreductase; PSI-biology, structural ge | 96.83 | |
| 4eye_A | 342 | Probable oxidoreductase; structural genomics, niai | 96.83 | |
| 1rjw_A | 339 | ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD | 96.82 | |
| 2hjr_A | 328 | Malate dehydrogenase; malaria, structural genomics | 96.81 | |
| 2ph5_A | 480 | Homospermidine synthase; alpha-beta protein, struc | 96.8 | |
| 2d8a_A | 348 | PH0655, probable L-threonine 3-dehydrogenase; pyro | 96.78 | |
| 4a0s_A | 447 | Octenoyl-COA reductase/carboxylase; oxidoreductase | 96.77 | |
| 1a5z_A | 319 | L-lactate dehydrogenase; oxidoreductase, glycolysi | 96.76 | |
| 3krt_A | 456 | Crotonyl COA reductase; structural genomics, prote | 96.75 | |
| 1jvb_A | 347 | NAD(H)-dependent alcohol dehydrogenase; archaeon, | 96.74 | |
| 1t2d_A | 322 | LDH-P, L-lactate dehydrogenase; ternary complex, o | 96.7 | |
| 3h8v_A | 292 | Ubiquitin-like modifier-activating enzyme 5; rossm | 96.7 | |
| 2ewd_A | 317 | Lactate dehydrogenase,; protein-substrate_cofactor | 96.69 | |
| 3fbg_A | 346 | Putative arginate lyase; structural genomics, unkn | 96.69 | |
| 1yqd_A | 366 | Sinapyl alcohol dehydrogenase; lignin, monolignol, | 96.69 | |
| 3pi7_A | 349 | NADH oxidoreductase; groes-like fold, NAD(P)-bindi | 96.68 | |
| 1lld_A | 319 | L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N | 96.66 | |
| 1pjc_A | 361 | Protein (L-alanine dehydrogenase); oxidoreductase, | 96.62 | |
| 3gaz_A | 343 | Alcohol dehydrogenase superfamily protein; oxidore | 96.57 | |
| 3oj0_A | 144 | Glutr, glutamyl-tRNA reductase; structural genomic | 96.55 | |
| 2vns_A | 215 | Metalloreductase steap3; metal-binding, transmembr | 96.55 | |
| 2nqt_A | 352 | N-acetyl-gamma-glutamyl-phosphate reductase; apopr | 96.49 | |
| 1zud_1 | 251 | Adenylyltransferase THIF; thiamin, thiazole, prote | 96.48 | |
| 1iz0_A | 302 | Quinone oxidoreductase; APO-enzyme, riken structur | 96.48 | |
| 2egg_A | 297 | AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff | 96.48 | |
| 1xyg_A | 359 | Putative N-acetyl-gamma-glutamyl-phosphate reduct; | 96.43 | |
| 3m6i_A | 363 | L-arabinitol 4-dehydrogenase; medium chain dehydro | 96.39 | |
| 2hjs_A | 340 | USG-1 protein homolog; aspartate-semialdehyde dehy | 96.39 | |
| 2vn8_A | 375 | Reticulon-4-interacting protein 1; mitochondrion, | 96.38 | |
| 3jyo_A | 283 | Quinate/shikimate dehydrogenase; enzyme-cofactor c | 96.36 | |
| 2i6t_A | 303 | Ubiquitin-conjugating enzyme E2-like isoform A; L- | 96.36 | |
| 1nvt_A | 287 | Shikimate 5'-dehydrogenase; structural genomics, P | 96.35 | |
| 4f3y_A | 272 | DHPR, dihydrodipicolinate reductase; structural ge | 96.33 | |
| 4g65_A | 461 | TRK system potassium uptake protein TRKA; structur | 96.31 | |
| 2h6e_A | 344 | ADH-4, D-arabinose 1-dehydrogenase; rossman fold, | 96.3 | |
| 1p9l_A | 245 | Dihydrodipicolinate reductase; oxidoreductase, lys | 96.25 | |
| 1hyh_A | 309 | L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2 | 96.24 | |
| 2cdc_A | 366 | Glucose dehydrogenase glucose 1-dehydrogenase, DHG | 96.23 | |
| 1e3j_A | 352 | NADP(H)-dependent ketose reductase; oxidoreductase | 96.22 | |
| 4dll_A | 320 | 2-hydroxy-3-oxopropionate reductase; structural ge | 96.21 | |
| 3h5n_A | 353 | MCCB protein; ubiquitin-activating enzyme, microci | 96.2 | |
| 2vhw_A | 377 | Alanine dehydrogenase; NAD, secreted, oxidoreducta | 96.2 | |
| 2d4a_B | 308 | Malate dehydrogenase; archaea, hyperthermophIle, o | 96.2 | |
| 3uog_A | 363 | Alcohol dehydrogenase; structural genomics, protei | 96.19 | |
| 2dq4_A | 343 | L-threonine 3-dehydrogenase; NAD-dependent, oxidor | 96.18 | |
| 2b5w_A | 357 | Glucose dehydrogenase; nucleotide binding motif, o | 96.17 | |
| 2ozp_A | 345 | N-acetyl-gamma-glutamyl-phosphate reductase; amino | 96.17 | |
| 4dvj_A | 363 | Putative zinc-dependent alcohol dehydrogenase Pro; | 96.09 | |
| 4e12_A | 283 | Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1 | 96.08 | |
| 1h2b_A | 359 | Alcohol dehydrogenase; oxidoreductase, archaea, hy | 95.97 | |
| 1p77_A | 272 | Shikimate 5-dehydrogenase; NADPH, oxidoreductase; | 95.97 | |
| 1oi7_A | 288 | Succinyl-COA synthetase alpha chain; SCS, ligase, | 95.97 | |
| 1xa0_A | 328 | Putative NADPH dependent oxidoreductases; structur | 95.94 | |
| 3c24_A | 286 | Putative oxidoreductase; YP_511008.1, structural g | 95.9 | |
| 2r00_A | 336 | Aspartate-semialdehyde dehydrogenase; conformation | 95.9 | |
| 2dph_A | 398 | Formaldehyde dismutase; dismutation of aldehydes, | 95.89 | |
| 3rui_A | 340 | Ubiquitin-like modifier-activating enzyme ATG7; au | 95.88 | |
| 1cdo_A | 374 | Alcohol dehydrogenase; oxidoreductase, oxidoreduct | 95.86 | |
| 3ip1_A | 404 | Alcohol dehydrogenase, zinc-containing; structural | 95.86 | |
| 4ej6_A | 370 | Putative zinc-binding dehydrogenase; structural ge | 95.86 | |
| 2ew2_A | 316 | 2-dehydropantoate 2-reductase, putative; alpha-str | 95.84 | |
| 2dpo_A | 319 | L-gulonate 3-dehydrogenase; structural genomics, N | 95.82 | |
| 1vj0_A | 380 | Alcohol dehydrogenase, zinc-containing; TM0436, st | 95.81 | |
| 3uko_A | 378 | Alcohol dehydrogenase class-3; alcohol dehydrogena | 95.79 | |
| 3dr3_A | 337 | N-acetyl-gamma-glutamyl-phosphate reductase; csgid | 95.78 | |
| 3orq_A | 377 | N5-carboxyaminoimidazole ribonucleotide synthetas; | 95.77 | |
| 1y8q_A | 346 | Ubiquitin-like 1 activating enzyme E1A; SUMO, hete | 95.72 | |
| 3tqh_A | 321 | Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella | 95.71 | |
| 2h78_A | 302 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601 | 95.7 | |
| 3d4o_A | 293 | Dipicolinate synthase subunit A; NP_243269.1, stru | 95.7 | |
| 2jhf_A | 374 | Alcohol dehydrogenase E chain; oxidoreductase, met | 95.68 | |
| 1e3i_A | 376 | Alcohol dehydrogenase, class II; HET: NAD; 2.08A { | 95.67 | |
| 3s2e_A | 340 | Zinc-containing alcohol dehydrogenase superfamily; | 95.66 | |
| 1gu7_A | 364 | Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s | 95.65 | |
| 3doj_A | 310 | AT3G25530, dehydrogenase-like protein; gamma-hydro | 95.65 | |
| 1ys4_A | 354 | Aspartate-semialdehyde dehydrogenase; oxidoreducta | 95.64 | |
| 2rir_A | 300 | Dipicolinate synthase, A chain; structural genomic | 95.62 | |
| 3don_A | 277 | Shikimate dehydrogenase; alpha-beta structure, ros | 95.6 | |
| 1zsy_A | 357 | Mitochondrial 2-enoyl thioester reductase; medium- | 95.59 | |
| 1f0y_A | 302 | HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive | 95.54 | |
| 1p0f_A | 373 | NADP-dependent alcohol dehydrogenase; ADH topology | 95.52 | |
| 1pl8_A | 356 | Human sorbitol dehydrogenase; NAD, oxidoreductase; | 95.51 | |
| 3two_A | 348 | Mannitol dehydrogenase; cinnamyl-alcohol dehydroge | 95.51 | |
| 3dfz_A | 223 | SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase | 95.49 | |
| 3l6d_A | 306 | Putative oxidoreductase; structural genomics, prot | 95.47 | |
| 1uuf_A | 369 | YAHK, zinc-type alcohol dehydrogenase-like protein | 95.45 | |
| 1piw_A | 360 | Hypothetical zinc-type alcohol dehydrogenase- like | 95.44 | |
| 4e4t_A | 419 | Phosphoribosylaminoimidazole carboxylase, ATPase; | 95.44 | |
| 2fzw_A | 373 | Alcohol dehydrogenase class III CHI chain; S-nitro | 95.44 | |
| 2o7s_A | 523 | DHQ-SDH PR, bifunctional 3-dehydroquinate dehydrat | 95.42 | |
| 3cky_A | 301 | 2-hydroxymethyl glutarate dehydrogenase; rossmann | 95.41 | |
| 2cf5_A | 357 | Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign | 95.41 | |
| 1kol_A | 398 | Formaldehyde dehydrogenase; oxidoreductase; HET: N | 95.41 | |
| 3p2o_A | 285 | Bifunctional protein fold; structural genomics, ce | 95.37 | |
| 2pv7_A | 298 | T-protein [includes: chorismate mutase (EC 5.4.99 | 95.35 | |
| 4gsl_A | 615 | Ubiquitin-like modifier-activating enzyme ATG7; ub | 95.34 | |
| 1gpj_A | 404 | Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro | 95.33 | |
| 1edz_A | 320 | 5,10-methylenetetrahydrofolate dehydrogenase; nucl | 95.33 | |
| 4gx0_A | 565 | TRKA domain protein; membrane protein, ION channel | 95.32 | |
| 3qy9_A | 243 | DHPR, dihydrodipicolinate reductase; rossmann fold | 95.32 | |
| 1y81_A | 138 | Conserved hypothetical protein; hyperthermophIle, | 95.3 | |
| 1mv8_A | 436 | GMD, GDP-mannose 6-dehydrogenase; rossman fold, do | 95.29 | |
| 3o8q_A | 281 | Shikimate 5-dehydrogenase I alpha; structural geno | 95.29 | |
| 4dio_A | 405 | NAD(P) transhydrogenase subunit alpha PART 1; stru | 95.2 | |
| 3pwz_A | 272 | Shikimate dehydrogenase 3; alpha-beta, oxidoreduct | 95.14 | |
| 3qsg_A | 312 | NAD-binding phosphogluconate dehydrogenase-like P; | 95.14 | |
| 4a26_A | 300 | Putative C-1-tetrahydrofolate synthase, cytoplasm; | 95.14 | |
| 3qha_A | 296 | Putative oxidoreductase; seattle structural genomi | 95.13 | |
| 1l7d_A | 384 | Nicotinamide nucleotide transhydrogenase, subunit | 95.1 |
| >3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-48 Score=387.57 Aligned_cols=318 Identities=32% Similarity=0.484 Sum_probs=272.4
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhh--ccCCeEEEEecCCCHHHHHHhhccCC
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLL--QKHQVFIVEGDLNDAPLLTKLFDVVP 193 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~v~~v~~Dl~d~~~l~~~~~~~~ 193 (469)
.++|+||||||+||||++|+++|+++|++|++++|................. ...+++++.+|++|.+.+.++++++
T Consensus 23 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~- 101 (351)
T 3ruf_A 23 FSPKTWLITGVAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDIRDLTTCEQVMKGV- 101 (351)
T ss_dssp HSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHTSCHHHHTTEEEEECCTTCHHHHHHHTTTC-
T ss_pred CCCCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhhhhhhccccccCCceEEEEccCCCHHHHHHHhcCC-
Confidence 4678999999999999999999999999999999976543332222211100 0158999999999999999999966
Q ss_pred ccEEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcCccccCCCCCCCCCCCCCCCCCCChHHHH
Q 012176 194 FTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAAT 273 (469)
Q Consensus 194 ~d~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y~~s 273 (469)
|+|||+||.........++...+++|+.++.+++++|++.+++ +|||+||.++||.....+++|+++. .|.+.|+.+
T Consensus 102 -d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~-~~v~~SS~~vyg~~~~~~~~E~~~~-~p~~~Y~~s 178 (351)
T 3ruf_A 102 -DHVLHQAALGSVPRSIVDPITTNATNITGFLNILHAAKNAQVQ-SFTYAASSSTYGDHPALPKVEENIG-NPLSPYAVT 178 (351)
T ss_dssp -SEEEECCCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCS-EEEEEEEGGGGTTCCCSSBCTTCCC-CCCSHHHHH
T ss_pred -CEEEECCccCCcchhhhCHHHHHHHHHHHHHHHHHHHHHcCCC-EEEEEecHHhcCCCCCCCCccCCCC-CCCChhHHH
Confidence 9999999987777777888999999999999999999999986 9999999999998888899999887 788999999
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEeecceecCCCCCC----ChHHHHHHHHHcCCceEEEeeCCCCcceEecccHHHHHHHH
Q 012176 274 KKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPD----MAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGC 349 (469)
Q Consensus 274 K~~~E~~~~~~~~~~gi~~~ilRp~~v~Gp~~~~~----~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~~~ 349 (469)
|.++|.+++.++.++|++++++||++||||+..+. .++..++..+..+.++.++ +++++.++|+|++|+|+++
T Consensus 179 K~~~E~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---g~g~~~~~~i~v~Dva~a~ 255 (351)
T 3ruf_A 179 KYVNEIYAQVYARTYGFKTIGLRYFNVFGRRQDPNGAYAAVIPKWTAAMLKGDDVYIN---GDGETSRDFCYIDNVIQMN 255 (351)
T ss_dssp HHHHHHHHHHHHHHHCCCCEEEEECSEESTTCCCCSTTCCHHHHHHHHHHHTCCCEEE---SSSCCEECCEEHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeeCceeCcCCCCCcchhhHHHHHHHHHHcCCCcEEe---CCCCeEEeeEEHHHHHHHH
Confidence 99999999999998999999999999999987665 5678889999999999888 7789999999999999999
Q ss_pred HHHhccCCCCCCCCCceEEEeCCCCcccHHHHHHHHHHHhCCCccceeec----CCCCCCCCcccCChHHHHHhcCCCcc
Q 012176 350 VGATGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIR----MPRNGDVPYTHANVSLAYKDFGYKPT 425 (469)
Q Consensus 350 ~~~~~~~~~~~~~~~~~iyni~~~~~vt~~el~~~i~~~~g~~~~~~~~~----~~~~~~~~~~~~d~~ka~~~LG~~p~ 425 (469)
+.++.++. ...+++||+++++++|+.|+++.+.+.+|.+......+ .....+.....+|++|++++|||+|+
T Consensus 256 ~~~~~~~~----~~~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~ 331 (351)
T 3ruf_A 256 ILSALAKD----SAKDNIYNVAVGDRTTLNELSGYIYDELNLIHHIDKLSIKYREFRSGDVRHSQADVTKAIDLLKYRPN 331 (351)
T ss_dssp HHHHTCCG----GGCSEEEEESCSCCEEHHHHHHHHHHHHHTTCCC-----EEECCCTTCCSBCCBCCHHHHHHHCCCCC
T ss_pred HHHHhhcc----ccCCCEEEeCCCCcccHHHHHHHHHHHhCcccccccccccccCCCCCccceeeeCHHHHHHHhCCCCC
Confidence 99988732 23459999999999999999999999999843222111 22345667788999999999999999
Q ss_pred CcHHHHHHHHHHHHHHHcC
Q 012176 426 TDLAAGLRKFVKWYVSYYG 444 (469)
Q Consensus 426 ~~l~~~l~~~v~~~~~~~~ 444 (469)
++++++|+++++||+++++
T Consensus 332 ~~~~~~l~~~~~~~~~~~~ 350 (351)
T 3ruf_A 332 IKIREGLRLSMPWYVRFLK 350 (351)
T ss_dssp CCHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHhhc
Confidence 9999999999999988754
|
| >4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-48 Score=389.35 Aligned_cols=315 Identities=24% Similarity=0.384 Sum_probs=264.3
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCC--CcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCC
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRG--DGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVP 193 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~ 193 (469)
.++|+||||||+||||++|+++|+++| ++|++++|........ .........+++++.+|++|.+.+.+++++.+
T Consensus 22 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~~~v~~~~~~~~~~~~~---~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~ 98 (346)
T 4egb_A 22 SNAMNILVTGGAGFIGSNFVHYMLQSYETYKIINFDALTYSGNLN---NVKSIQDHPNYYFVKGEIQNGELLEHVIKERD 98 (346)
T ss_dssp --CEEEEEETTTSHHHHHHHHHHHHHCTTEEEEEEECCCTTCCGG---GGTTTTTCTTEEEEECCTTCHHHHHHHHHHHT
T ss_pred cCCCeEEEECCccHHHHHHHHHHHhhCCCcEEEEEeccccccchh---hhhhhccCCCeEEEEcCCCCHHHHHHHHhhcC
Confidence 567899999999999999999999999 6778887754222111 01112223589999999999999999999856
Q ss_pred ccEEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcCccccCCC-CCCCCCCCCCCCCCCChHHH
Q 012176 194 FTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLN-TQVPFSESHRTDQPASLYAA 272 (469)
Q Consensus 194 ~d~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS~~vyg~~-~~~~~~E~~~~~~p~~~Y~~ 272 (469)
+|+|||+||.........++..++++|+.++.+++++|++.+++ +|||+||.++||.. ...+++|+++. .|.+.|+.
T Consensus 99 ~d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~-~~v~~SS~~vy~~~~~~~~~~E~~~~-~p~~~Y~~ 176 (346)
T 4egb_A 99 VQVIVNFAAESHVDRSIENPIPFYDTNVIGTVTLLELVKKYPHI-KLVQVSTDEVYGSLGKTGRFTEETPL-APNSPYSS 176 (346)
T ss_dssp CCEEEECCCCC---------CHHHHHHTHHHHHHHHHHHHSTTS-EEEEEEEGGGGCCCCSSCCBCTTSCC-CCCSHHHH
T ss_pred CCEEEECCcccchhhhhhCHHHHHHHHHHHHHHHHHHHHhcCCC-EEEEeCchHHhCCCCcCCCcCCCCCC-CCCChhHH
Confidence 69999999987666666788899999999999999999999986 99999999999976 45689999887 78899999
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceEecccHHHHHHHHHHH
Q 012176 273 TKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGA 352 (469)
Q Consensus 273 sK~~~E~~~~~~~~~~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~~~~~~ 352 (469)
+|.++|.+++.++.++|++++++||+.||||+......+..++..+..++++.++ +++++.++|+|++|+|++++.+
T Consensus 177 sK~~~E~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~i~v~Dva~a~~~~ 253 (346)
T 4egb_A 177 SKASADMIALAYYKTYQLPVIVTRCSNNYGPYQYPEKLIPLMVTNALEGKKLPLY---GDGLNVRDWLHVTDHCSAIDVV 253 (346)
T ss_dssp HHHHHHHHHHHHHHHHCCCEEEEEECEEESTTCCTTSHHHHHHHHHHTTCCCEEE---TTSCCEECEEEHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEeecceeCcCCCccchHHHHHHHHHcCCCceee---CCCCeEEeeEEHHHHHHHHHHH
Confidence 9999999999999989999999999999999988778888999999999999988 7789999999999999999999
Q ss_pred hccCCCCCCCCCceEEEeCCCCcccHHHHHHHHHHHhCCCccceeecCCCCCCCCcccCChHHHHHhcCCCccCcHHHHH
Q 012176 353 TGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRNGDVPYTHANVSLAYKDFGYKPTTDLAAGL 432 (469)
Q Consensus 353 ~~~~~~~~~~~~~~iyni~~~~~vt~~el~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~~l~~~l 432 (469)
++++. .+++||+++++++++.|+++.+.+.+|.+...........++...+.+|++|++++|||+|+++++++|
T Consensus 254 ~~~~~------~g~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~~~e~l 327 (346)
T 4egb_A 254 LHKGR------VGEVYNIGGNNEKTNVEVVEQIITLLGKTKKDIEYVTDRLGHDRRYAINAEKMKNEFDWEPKYTFEQGL 327 (346)
T ss_dssp HHHCC------TTCEEEECCSCCEEHHHHHHHHHHHHTCCGGGCEEECC--CCCSCCCBCCHHHHHHHCCCCCCCHHHHH
T ss_pred HhcCC------CCCEEEECCCCceeHHHHHHHHHHHhCCCcccccccCCCCCCcceeeccHHHHHHHcCCCCCCCHHHHH
Confidence 98763 458999999999999999999999999987644444444566667789999999999999999999999
Q ss_pred HHHHHHHHHHcC
Q 012176 433 RKFVKWYVSYYG 444 (469)
Q Consensus 433 ~~~v~~~~~~~~ 444 (469)
+++++||+++.+
T Consensus 328 ~~~~~~~~~~~~ 339 (346)
T 4egb_A 328 QETVQWYEKNEE 339 (346)
T ss_dssp HHHHHHHHHCHH
T ss_pred HHHHHHHHhhhh
Confidence 999999987654
|
| >3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-46 Score=372.76 Aligned_cols=320 Identities=24% Similarity=0.370 Sum_probs=266.4
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCccE
Q 012176 117 NGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTH 196 (469)
Q Consensus 117 ~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~d~ 196 (469)
.+|+||||||+||||++|+++|+++|++|++++|.............. ....++.++.+|++|+++++++++..++|+
T Consensus 4 ~~~~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~ 81 (341)
T 3enk_A 4 TKGTILVTGGAGYIGSHTAVELLAHGYDVVIADNLVNSKREAIARIEK--ITGKTPAFHETDVSDERALARIFDAHPITA 81 (341)
T ss_dssp SSCEEEEETTTSHHHHHHHHHHHHTTCEEEEECCCSSSCTHHHHHHHH--HHSCCCEEECCCTTCHHHHHHHHHHSCCCE
T ss_pred CCcEEEEecCCcHHHHHHHHHHHHCCCcEEEEecCCcchHHHHHHHHh--hcCCCceEEEeecCCHHHHHHHHhccCCcE
Confidence 568999999999999999999999999999999987655443333222 124578999999999999999999656699
Q ss_pred EEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcCccccCCCCCCCCCCCCCCCCCCChHHHHHHH
Q 012176 197 VLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKA 276 (469)
Q Consensus 197 Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y~~sK~~ 276 (469)
||||||.........++...++.|+.++.+++++|++.+.+ +|||+||.++||.....+++|+++. .|.+.|+.+|.+
T Consensus 82 vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~iv~~SS~~~~g~~~~~~~~e~~~~-~~~~~Y~~sK~~ 159 (341)
T 3enk_A 82 AIHFAALKAVGESVAKPIEYYRNNLDSLLSLLRVMRERAVK-RIVFSSSATVYGVPERSPIDETFPL-SATNPYGQTKLM 159 (341)
T ss_dssp EEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCC-EEEEEEEGGGBCSCSSSSBCTTSCC-BCSSHHHHHHHH
T ss_pred EEECccccccCccccChHHHHHHHHHHHHHHHHHHHhCCCC-EEEEEecceEecCCCCCCCCCCCCC-CCCChhHHHHHH
Confidence 99999987766677788899999999999999999999876 9999999999998888889999887 788999999999
Q ss_pred HHHHHHHHHHHhC-CcEEEEeecceecCCCC----------CCChHHHHHHHHHcC-CceEEEee---CCCCcceEeccc
Q 012176 277 GEEIAHTYNHIYG-LALTGLRFFTVYGPWGR----------PDMAYFFFTKDILQG-KTIDVYKT---QDDREVARDFTY 341 (469)
Q Consensus 277 ~E~~~~~~~~~~g-i~~~ilRp~~v~Gp~~~----------~~~~~~~~~~~~~~g-~~~~~~~~---~~~~~~~~~~v~ 341 (469)
+|.+++.++.+++ ++++++||++||||+.. ....++.+.+..... .++.+++. ..++++.++|+|
T Consensus 160 ~e~~~~~~~~~~~~~~~~~lRp~~v~G~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~i~ 239 (341)
T 3enk_A 160 AEQILRDVEAADPSWRVATLRYFNPVGAHESGLIGEDPAGIPNNLMPYVAQVAVGKLEKLRVFGSDYPTPDGTGVRDYIH 239 (341)
T ss_dssp HHHHHHHHHHHCTTCEEEEEEECEEECCCTTSSCCCCCSSSCSSHHHHHHHHHHTSSSCEEEECSCSSSTTSSCEECEEE
T ss_pred HHHHHHHHhhcCCCceEEEEeeccccCCccccccCCCcccCccchHHHHHHHHhcCCCceEEeCCccCCCCCCeeEeeEE
Confidence 9999999998876 99999999999999541 133444444433332 45666620 016889999999
Q ss_pred HHHHHHHHHHHhccCCCCCCCCCceEEEeCCCCcccHHHHHHHHHHHhCCCccceeecCCCCCCCCcccCChHHHHHhcC
Q 012176 342 IDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRNGDVPYTHANVSLAYKDFG 421 (469)
Q Consensus 342 v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~~vt~~el~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~d~~ka~~~LG 421 (469)
++|+|++++.++++... ...+++||+++++++|+.|+++.+.+.+|.+..+...+. ..++.....+|++|++++||
T Consensus 240 v~Dva~a~~~~~~~~~~---~~~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~-~~~~~~~~~~d~~k~~~~lG 315 (341)
T 3enk_A 240 VVDLARGHIAALDALER---RDASLTVNLGTGRGYSVLEVVRAFEKASGRAVPYELVAR-RPGDVAECYANPAAAAETIG 315 (341)
T ss_dssp HHHHHHHHHHHHHHHHH---HTSCEEEEESCSCCEEHHHHHHHHHHHHCSCCCEEEECC-CTTCCSEECBCCHHHHHHHC
T ss_pred HHHHHHHHHHHHHhhhc---CCcceEEEeCCCCceeHHHHHHHHHHHhCCCcceeeCCC-CCCCccccccCHHHHHHHcC
Confidence 99999999999876210 123599999999999999999999999999877766554 45677778899999999999
Q ss_pred CCccCcHHHHHHHHHHHHHHHcC
Q 012176 422 YKPTTDLAAGLRKFVKWYVSYYG 444 (469)
Q Consensus 422 ~~p~~~l~~~l~~~v~~~~~~~~ 444 (469)
|+|+++++++|+++++||+++.+
T Consensus 316 ~~p~~~l~~~l~~~~~~~~~~~~ 338 (341)
T 3enk_A 316 WKAERDLERMCADHWRWQENNPR 338 (341)
T ss_dssp CCCCCCHHHHHHHHHHHHHHSTT
T ss_pred CCCCCCHHHHHHHHHHHHHhcCc
Confidence 99999999999999999988754
|
| >3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-46 Score=371.68 Aligned_cols=297 Identities=22% Similarity=0.297 Sum_probs=261.9
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCccEE
Q 012176 118 GMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTHV 197 (469)
Q Consensus 118 ~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~d~V 197 (469)
+|+||||||+||||++|+++|+++|++|++++|.... . . + .+++++.+|++ .+.+.++++++ |+|
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~-~--------~-~--~~~~~~~~Dl~-~~~~~~~~~~~--d~V 66 (311)
T 3m2p_A 2 SLKIAVTGGTGFLGQYVVESIKNDGNTPIILTRSIGN-K--------A-I--NDYEYRVSDYT-LEDLINQLNDV--DAV 66 (311)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCC-----------------CCEEEECCCC-HHHHHHHTTTC--SEE
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCCCCc-c--------c-C--CceEEEEcccc-HHHHHHhhcCC--CEE
Confidence 4799999999999999999999999999999997321 1 1 1 18899999999 99999999966 999
Q ss_pred EEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcCccccCCCCCCCCCCCCCCCCCCChHHHHHHHH
Q 012176 198 LHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAG 277 (469)
Q Consensus 198 ih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y~~sK~~~ 277 (469)
||+|+..... ++...+++|+.++.+++++|++.+++ +|||+||.++||.....+++|+++. .|.+.|+.+|.++
T Consensus 67 ih~a~~~~~~----~~~~~~~~n~~~~~~ll~a~~~~~~~-r~v~~SS~~vyg~~~~~~~~E~~~~-~p~~~Y~~sK~~~ 140 (311)
T 3m2p_A 67 VHLAATRGSQ----GKISEFHDNEILTQNLYDACYENNIS-NIVYASTISAYSDETSLPWNEKELP-LPDLMYGVSKLAC 140 (311)
T ss_dssp EECCCCCCSS----SCGGGTHHHHHHHHHHHHHHHHTTCC-EEEEEEEGGGCCCGGGCSBCTTSCC-CCSSHHHHHHHHH
T ss_pred EEccccCCCC----ChHHHHHHHHHHHHHHHHHHHHcCCC-EEEEEccHHHhCCCCCCCCCCCCCC-CCCchhHHHHHHH
Confidence 9999985543 67778899999999999999999986 9999999999998887899999887 7889999999999
Q ss_pred HHHHHHHHHHhCCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceEecccHHHHHHHHHHHhccCC
Q 012176 278 EEIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGATGSGG 357 (469)
Q Consensus 278 E~~~~~~~~~~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~~~~~~~~~~~ 357 (469)
|++++.++.++|++++++||+.||||+..+...+..++..+..++++.++ +++++.++|+|++|+|++++.+++++.
T Consensus 141 E~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~---g~~~~~~~~v~v~Dva~a~~~~~~~~~ 217 (311)
T 3m2p_A 141 EHIGNIYSRKKGLCIKNLRFAHLYGFNEKNNYMINRFFRQAFHGEQLTLH---ANSVAKREFLYAKDAAKSVIYALKQEK 217 (311)
T ss_dssp HHHHHHHHHHSCCEEEEEEECEEECSCC--CCHHHHHHHHHHTCCCEEES---SBCCCCEEEEEHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHcCCCEEEEeeCceeCcCCCCCCHHHHHHHHHHcCCCeEEe---cCCCeEEceEEHHHHHHHHHHHHhcCC
Confidence 99999999989999999999999999887767888999999999999887 668899999999999999999998762
Q ss_pred CCCCCCCceEEEeCCCCcccHHHHHHHHHHHhCCCccceeecCCCCCCCCcccCChHHHHHhcCCCccCcHHHHHHHHHH
Q 012176 358 KKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRNGDVPYTHANVSLAYKDFGYKPTTDLAAGLRKFVK 437 (469)
Q Consensus 358 ~~~~~~~~~iyni~~~~~vt~~el~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~~l~~~l~~~v~ 437 (469)
.+++||+++++++|+.|+++.+.+.+|.+......+.+...+.....+|++|++++|||+|+++++++|+++++
T Consensus 218 ------~~~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~~~~~l~~~~~ 291 (311)
T 3m2p_A 218 ------VSGTFNIGSGDALTNYEVANTINNAFGNKDNLLVKNPNANEGIHSSYMDSSKAKELLDFSTDYNFATAVEEIHL 291 (311)
T ss_dssp ------CCEEEEECCSCEECHHHHHHHHHHHTTCTTCEEECSSSBCCSCCCBCBCCHHHHHHSCCCCSCCHHHHHHHHHH
T ss_pred ------CCCeEEeCCCCcccHHHHHHHHHHHhCCCCcceecCCCCCCCcCceecCHHHHHHHhCCCcccCHHHHHHHHHH
Confidence 45999999999999999999999999998877776664566777889999999999999999999999999999
Q ss_pred HHHHHcC
Q 012176 438 WYVSYYG 444 (469)
Q Consensus 438 ~~~~~~~ 444 (469)
||++..+
T Consensus 292 ~~~~~~~ 298 (311)
T 3m2p_A 292 LMRGLDD 298 (311)
T ss_dssp HHCC---
T ss_pred HHHhccc
Confidence 9965544
|
| >1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-45 Score=370.61 Aligned_cols=316 Identities=31% Similarity=0.475 Sum_probs=265.7
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhh--ccCCeEEEEecCCCHHHHHHhhccCC
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLL--QKHQVFIVEGDLNDAPLLTKLFDVVP 193 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~v~~v~~Dl~d~~~l~~~~~~~~ 193 (469)
.++|+||||||+||||++|+++|+++|++|++++|........+........ ...+++++.+|++|.+.+.++++++
T Consensus 25 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~- 103 (352)
T 1sb8_A 25 AQPKVWLITGVAGFIGSNLLETLLKLDQKVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQGDIRNLDDCNNACAGV- 103 (352)
T ss_dssp HSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHHSCHHHHTTEEEEECCTTSHHHHHHHHTTC-
T ss_pred ccCCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCccchhhHHHHhhhcccccCCceEEEECCCCCHHHHHHHhcCC-
Confidence 4568999999999999999999999999999999965432222222211111 1258999999999999999999966
Q ss_pred ccEEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcCccccCCCCCCCCCCCCCCCCCCChHHHH
Q 012176 194 FTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAAT 273 (469)
Q Consensus 194 ~d~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y~~s 273 (469)
|+|||+||.........+++..+++|+.++.+++++|++.+++ +|||+||.++|+.....+++|+++. .|.+.|+.+
T Consensus 104 -d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~-~~v~~SS~~~~~~~~~~~~~E~~~~-~~~~~Y~~s 180 (352)
T 1sb8_A 104 -DYVLHQAALGSVPRSINDPITSNATNIDGFLNMLIAARDAKVQ-SFTYAASSSTYGDHPGLPKVEDTIG-KPLSPYAVT 180 (352)
T ss_dssp -SEEEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCS-EEEEEEEGGGGTTCCCSSBCTTCCC-CCCSHHHHH
T ss_pred -CEEEECCcccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCC-EEEEeccHHhcCCCCCCCCCCCCCC-CCCChhHHH
Confidence 9999999986655556788899999999999999999998876 9999999999998777789998876 788999999
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEeecceecCCCCCC----ChHHHHHHHHHcCCceEEEeeCCCCcceEecccHHHHHHHH
Q 012176 274 KKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPD----MAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGC 349 (469)
Q Consensus 274 K~~~E~~~~~~~~~~gi~~~ilRp~~v~Gp~~~~~----~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~~~ 349 (469)
|.++|.+++.++.++|+++++|||+.||||+.... ..+..++..+..+.++.++ +++++.++|+|++|+|+++
T Consensus 181 K~~~e~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---g~g~~~~~~i~v~Dva~a~ 257 (352)
T 1sb8_A 181 KYVNELYADVFSRCYGFSTIGLRYFNVFGRRQDPNGAYAAVIPKWTSSMIQGDDVYIN---GDGETSRDFCYIENTVQAN 257 (352)
T ss_dssp HHHHHHHHHHHHHHHCCCCEEEEECCEECTTCCCCSTTCCHHHHHHHHHHHTCCCEEE---SSSCCEECCEEHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCEEEEEECceeCcCCCCCcchhhHHHHHHHHHHCCCCcEEe---CCCCceEeeEEHHHHHHHH
Confidence 99999999999988899999999999999987654 4567788888889988877 6788999999999999999
Q ss_pred HHHhccCCCCCCCCCceEEEeCCCCcccHHHHHHHHHHHh---CCCccce--eecCCCCCCCCcccCChHHHHHhcCCCc
Q 012176 350 VGATGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLL---NTKAKKH--VIRMPRNGDVPYTHANVSLAYKDFGYKP 424 (469)
Q Consensus 350 ~~~~~~~~~~~~~~~~~iyni~~~~~vt~~el~~~i~~~~---g~~~~~~--~~~~~~~~~~~~~~~d~~ka~~~LG~~p 424 (469)
+.++.... ...+++||+++++++|+.|+++.+.+.+ |.+.... ..+ .+.++.....+|++|++++|||+|
T Consensus 258 ~~~~~~~~----~~~~~~~ni~~~~~~s~~e~~~~i~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~d~~k~~~~lG~~p 332 (352)
T 1sb8_A 258 LLAATAGL----DARNQVYNIAVGGRTSLNQLFFALRDGLAENGVSYHREPVYRD-FREGDVRHSLADISKAAKLLGYAP 332 (352)
T ss_dssp HHHHTCCG----GGCSEEEEESCSCCEEHHHHHHHHHHHHHHTTCCCCCCCEEEC-CCTTCCSBCCBCCHHHHHHTCCCC
T ss_pred HHHHhccc----cCCCceEEeCCCCCccHHHHHHHHHHHHHhcCCCCCCCceecC-CCccchhhccCCHHHHHHHhCCCC
Confidence 99887631 2345999999999999999999999999 9876532 222 234456677889999999999999
Q ss_pred cCcHHHHHHHHHHHHHHHc
Q 012176 425 TTDLAAGLRKFVKWYVSYY 443 (469)
Q Consensus 425 ~~~l~~~l~~~v~~~~~~~ 443 (469)
+++++++|+++++||++++
T Consensus 333 ~~~~~e~l~~~~~~~~~~~ 351 (352)
T 1sb8_A 333 KYDVSAGVALAMPWYIMFL 351 (352)
T ss_dssp CCCHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHhc
Confidence 9999999999999998764
|
| >3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose 4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis} SCOP: c.2.1.0 PDB: 3icp_A* 3aw9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-46 Score=367.68 Aligned_cols=304 Identities=27% Similarity=0.385 Sum_probs=256.8
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCccEEE
Q 012176 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTHVL 198 (469)
Q Consensus 119 ~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~d~Vi 198 (469)
|+||||||+||||++|+++|+++|++|++++|........ ...+++++.+|+.|.+ +.+++++ |+||
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~---------~~~~~~~~~~Dl~d~~-~~~~~~~---d~vi 67 (312)
T 3ko8_A 1 MRIVVTGGAGFIGSHLVDKLVELGYEVVVVDNLSSGRREF---------VNPSAELHVRDLKDYS-WGAGIKG---DVVF 67 (312)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEECCCSSCCGGG---------SCTTSEEECCCTTSTT-TTTTCCC---SEEE
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCEEEEEeCCCCCchhh---------cCCCceEEECccccHH-HHhhcCC---CEEE
Confidence 6899999999999999999999999999999976532221 1458999999999998 8888876 9999
Q ss_pred EcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcCccccCCCCCCCCCCCCCCCCCCChHHHHHHHHH
Q 012176 199 HLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGE 278 (469)
Q Consensus 199 h~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y~~sK~~~E 278 (469)
|+||.........++...+++|+.++.+++++|++.+++ +|||+||.++||.....+++|+++. .|.+.|+.+|.++|
T Consensus 68 h~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~-~iv~~SS~~vyg~~~~~~~~e~~~~-~p~~~Y~~sK~~~e 145 (312)
T 3ko8_A 68 HFAANPEVRLSTTEPIVHFNENVVATFNVLEWARQTGVR-TVVFASSSTVYGDADVIPTPEEEPY-KPISVYGAAKAAGE 145 (312)
T ss_dssp ECCSSCSSSGGGSCHHHHHHHHHHHHHHHHHHHHHHTCC-EEEEEEEGGGGCSCSSSSBCTTSCC-CCCSHHHHHHHHHH
T ss_pred ECCCCCCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCC-EEEEeCcHHHhCCCCCCCCCCCCCC-CCCChHHHHHHHHH
Confidence 999986667778889999999999999999999999986 9999999999998888899998876 78899999999999
Q ss_pred HHHHHHHHHhCCcEEEEeecceecCCCCCCChHHHHHHHHHcC-CceEEEeeCCCCcceEecccHHHHHHHHHHHhccCC
Q 012176 279 EIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQG-KTIDVYKTQDDREVARDFTYIDDVVKGCVGATGSGG 357 (469)
Q Consensus 279 ~~~~~~~~~~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~v~v~Dva~~~~~~~~~~~ 357 (469)
.+++.++.++|++++++||++||||+... ..+..++..+..+ .++.++ +++++.++|+|++|+|++++.+++++.
T Consensus 146 ~~~~~~~~~~g~~~~~lrp~~v~g~~~~~-~~~~~~~~~~~~~~~~~~~~---~~g~~~~~~i~v~Dva~a~~~~~~~~~ 221 (312)
T 3ko8_A 146 VMCATYARLFGVRCLAVRYANVVGPRLRH-GVIYDFIMKLRRNPNVLEVL---GDGTQRKSYLYVRDAVEATLAAWKKFE 221 (312)
T ss_dssp HHHHHHHHHHCCEEEEEEECEEECTTCCS-SHHHHHHHHHHHCTTEEEEC-------CEECEEEHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCEEEEeeccccCcCCCC-ChHHHHHHHHHhCCCCeEEc---CCCCeEEeeEEHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999998664 3556677777766 455566 678899999999999999999998710
Q ss_pred CCCCCCCceEEEeCCCCcccHHHHHHHHHHHhCCCccceeecCC-----CCCCCCcccCChHHHHHhcCCCccCcHHHHH
Q 012176 358 KKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMP-----RNGDVPYTHANVSLAYKDFGYKPTTDLAAGL 432 (469)
Q Consensus 358 ~~~~~~~~~iyni~~~~~vt~~el~~~i~~~~g~~~~~~~~~~~-----~~~~~~~~~~d~~ka~~~LG~~p~~~l~~~l 432 (469)
. ....+++||+++++++|+.|+++.+.+.+|.+..+...+.. ...+.....+|++|++++|||+|+++++++|
T Consensus 222 ~--~~~~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~~~~~l 299 (312)
T 3ko8_A 222 E--MDAPFLALNVGNVDAVRVLDIAQIVAEVLGLRPEIRLVPSTPDGRGWPGDVKYMTLAVTKLMKLTGWRPTMTSAEAV 299 (312)
T ss_dssp H--SCCSEEEEEESCSSCEEHHHHHHHHHHHHTCCCEEEEC----------CCCSEECBCCHHHHHHHCCCCSSCHHHHH
T ss_pred c--cCCCCcEEEEcCCCceeHHHHHHHHHHHhCCCCceeecCccccccCCCCCccccccCHHHHHHHhCCCCCCCHHHHH
Confidence 0 02446999999999999999999999999998877665432 2445667789999999999999999999999
Q ss_pred HHHHHHHHHHc
Q 012176 433 RKFVKWYVSYY 443 (469)
Q Consensus 433 ~~~v~~~~~~~ 443 (469)
+++++||+++.
T Consensus 300 ~~~~~~~~~~~ 310 (312)
T 3ko8_A 300 KKTAEDLAKEL 310 (312)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHhhh
Confidence 99999998753
|
| >2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain dehydrogenase/reductase, rossmann fold, oxidoreductase; HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-45 Score=365.56 Aligned_cols=302 Identities=24% Similarity=0.336 Sum_probs=259.4
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCcc
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFT 195 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~d 195 (469)
.+.|+||||||+||||++|+++|+++|++|++++|.... .. + +++++.+|++|.+.+++++++.++|
T Consensus 10 ~~~~~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~-~~---------l---~~~~~~~Dl~d~~~~~~~~~~~~~d 76 (321)
T 2pk3_A 10 HGSMRALITGVAGFVGKYLANHLTEQNVEVFGTSRNNEA-KL---------P---NVEMISLDIMDSQRVKKVISDIKPD 76 (321)
T ss_dssp ---CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCTTC-CC---------T---TEEEEECCTTCHHHHHHHHHHHCCS
T ss_pred cCcceEEEECCCChHHHHHHHHHHHCCCEEEEEecCCcc-cc---------c---eeeEEECCCCCHHHHHHHHHhcCCC
Confidence 566899999999999999999999999999999997643 11 1 7889999999999999999885569
Q ss_pred EEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhc-CCCCeEEEEcCccccCCC--CCCCCCCCCCCCCCCChHHH
Q 012176 196 HVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSV-NPQPSIVWASSSSVYGLN--TQVPFSESHRTDQPASLYAA 272 (469)
Q Consensus 196 ~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~-~~~~~~V~~SS~~vyg~~--~~~~~~E~~~~~~p~~~Y~~ 272 (469)
+||||||........++++..+++|+.++.+++++|++. +.+ +|||+||.++||.. ...+++|+++. .|.+.|+.
T Consensus 77 ~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~~-~iv~~SS~~v~g~~~~~~~~~~E~~~~-~~~~~Y~~ 154 (321)
T 2pk3_A 77 YIFHLAAKSSVKDSWLNKKGTFSTNVFGTLHVLDAVRDSNLDC-RILTIGSSEEYGMILPEESPVSEENQL-RPMSPYGV 154 (321)
T ss_dssp EEEECCSCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHHTCCC-EEEEEEEGGGTBSCCGGGCSBCTTSCC-BCCSHHHH
T ss_pred EEEEcCcccchhhhhhcHHHHHHHHHHHHHHHHHHHHHhCCCC-eEEEEccHHhcCCCCCCCCCCCCCCCC-CCCCccHH
Confidence 999999987766667788999999999999999999876 454 99999999999876 56689998876 78899999
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEeecceecCCCCCCChHHHHHHHHHc---C--CceEEEeeCCCCcceEecccHHHHHH
Q 012176 273 TKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQ---G--KTIDVYKTQDDREVARDFTYIDDVVK 347 (469)
Q Consensus 273 sK~~~E~~~~~~~~~~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~---g--~~~~~~~~~~~~~~~~~~v~v~Dva~ 347 (469)
+|.++|.+++.++.++|++++++||++||||+......+..++..+.. | .++.++ +++++.++|+|++|+|+
T Consensus 155 sK~~~E~~~~~~~~~~gi~~~ilrp~~v~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~~~~~~~v~v~Dva~ 231 (321)
T 2pk3_A 155 SKASVGMLARQYVKAYGMDIIHTRTFNHIGPGQSLGFVTQDFAKQIVDIEMEKQEPIIKV---GNLEAVRDFTDVRDIVQ 231 (321)
T ss_dssp HHHHHHHHHHHHHHHHCCEEEEEEECEEECTTCCTTSHHHHHHHHHHHHHTTSSCSEEEE---SCSSCEEEEEEHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEEeCcccCcCCCCCchHHHHHHHHHHHhcCCCCCeEEe---CCCCcEEeeEEHHHHHH
Confidence 999999999999988899999999999999988766666777777766 7 577676 66788999999999999
Q ss_pred HHHHHhccCCCCCCCCCceEEEeCCCCcccHHHHHHHHHHHhCCCccceeecC-CCCCCCCcccCChHHHHHhcCCCccC
Q 012176 348 GCVGATGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRM-PRNGDVPYTHANVSLAYKDFGYKPTT 426 (469)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~iyni~~~~~vt~~el~~~i~~~~g~~~~~~~~~~-~~~~~~~~~~~d~~ka~~~LG~~p~~ 426 (469)
+++.++.++ ..+++||+++++++|+.|+++.+.+.+|.+..+...|. .+..+.....+|++|++++|||+|++
T Consensus 232 a~~~~~~~~------~~g~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~p~~~~~~~~~~~~~d~~k~~~~lG~~p~~ 305 (321)
T 2pk3_A 232 AYWLLSQYG------KTGDVYNVCSGIGTRIQDVLDLLLAMANVKIDTELNPLQLRPSEVPTLIGSNKRLKDSTGWKPRI 305 (321)
T ss_dssp HHHHHHHHC------CTTCEEEESCSCEEEHHHHHHHHHHHSSSCCEEEECGGGCCSSCCSBCCBCCHHHHHHHCCCCCS
T ss_pred HHHHHHhCC------CCCCeEEeCCCCCeeHHHHHHHHHHHhCCCCceeeccccCCCcccchhccCHHHHHHHcCCCcCC
Confidence 999999865 13489999999999999999999999998766555442 23445567789999999999999999
Q ss_pred cHHHHHHHHHHHHHH
Q 012176 427 DLAAGLRKFVKWYVS 441 (469)
Q Consensus 427 ~l~~~l~~~v~~~~~ 441 (469)
+++++|+++++||++
T Consensus 306 ~~~e~l~~~~~~~~~ 320 (321)
T 2pk3_A 306 PLEKSLFEILQSYRQ 320 (321)
T ss_dssp CHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHhc
Confidence 999999999999964
|
| >2hun_A 336AA long hypothetical DTDP-glucose 4,6-dehydrat; rossmann fold, structural genomics, NPPSFA; HET: NAD; 2.07A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-45 Score=365.25 Aligned_cols=311 Identities=25% Similarity=0.390 Sum_probs=259.0
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCC--CcEEEEeCCCCCCC-hhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCC
Q 012176 117 NGMTVLVTGAAGFVGSHCSLALKKRG--DGVLGLDNFNSYYD-PSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVP 193 (469)
Q Consensus 117 ~~~~VlVtGatG~IG~~l~~~L~~~G--~~V~~~~r~~~~~~-~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~ 193 (469)
++|+||||||+||||++|+++|+++| ++|++++|...... ..+ .......+++++.+|++|.+.+++++.++
T Consensus 2 ~~m~vlVTGatG~iG~~l~~~L~~~g~~~~V~~~~r~~~~~~~~~~----~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~- 76 (336)
T 2hun_A 2 HSMKLLVTGGMGFIGSNFIRYILEKHPDWEVINIDKLGYGSNPANL----KDLEDDPRYTFVKGDVADYELVKELVRKV- 76 (336)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCTTCCGGGG----TTTTTCTTEEEEECCTTCHHHHHHHHHTC-
T ss_pred CCCeEEEECCCchHHHHHHHHHHHhCCCCEEEEEecCcccCchhHH----hhhccCCceEEEEcCCCCHHHHHHHhhCC-
Confidence 35789999999999999999999996 89999998642111 111 11112357999999999999999999766
Q ss_pred ccEEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcCccccCCCCCCCCCCCCCCCCCCChHHHH
Q 012176 194 FTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAAT 273 (469)
Q Consensus 194 ~d~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y~~s 273 (469)
|+||||||......+..+++.++++|+.++.+++++|++.+..++|||+||.++||.....+++|+++. .+.+.|+.+
T Consensus 77 -d~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~~~iv~~SS~~vyg~~~~~~~~E~~~~-~~~~~Y~~s 154 (336)
T 2hun_A 77 -DGVVHLAAESHVDRSISSPEIFLHSNVIGTYTLLESIRRENPEVRFVHVSTDEVYGDILKGSFTENDRL-MPSSPYSAT 154 (336)
T ss_dssp -SEEEECCCCCCHHHHHHCTHHHHHHHHHHHHHHHHHHHHHCTTSEEEEEEEGGGGCCCSSSCBCTTBCC-CCCSHHHHH
T ss_pred -CEEEECCCCcChhhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEeccHHHHCCCCCCCcCCCCCC-CCCCccHHH
Confidence 999999998765556678889999999999999999998875459999999999997766788998876 688999999
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceEecccHHHHHHHHHHHh
Q 012176 274 KKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGAT 353 (469)
Q Consensus 274 K~~~E~~~~~~~~~~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~~~~~~~ 353 (469)
|.++|.+++.++.++|++++++||+.||||+..+..++..++..+..++++.++ +++++.++|+|++|+|++++.++
T Consensus 155 K~~~e~~~~~~~~~~~~~~~ilrp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~i~v~Dva~~~~~~~ 231 (336)
T 2hun_A 155 KAASDMLVLGWTRTYNLNASITRCTNNYGPYQFPEKLIPKTIIRASLGLKIPIY---GTGKNVRDWLYVEDHVRAIELVL 231 (336)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEEECEEESTTCCTTSHHHHHHHHHHTTCCEEEE---TC---CEEEEEHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeeeeeeCcCCCcCchHHHHHHHHHcCCCceEe---CCCCceeeeEEHHHHHHHHHHHH
Confidence 999999999999989999999999999999876666777888888999988887 66888999999999999999998
Q ss_pred ccCCCCCCCCCceEEEeCCCCcccHHHHHHHHHHHhCCCccceeecCCCCCCCCcccCChHHHHHhcCCCccCcHHHHHH
Q 012176 354 GSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRNGDVPYTHANVSLAYKDFGYKPTTDLAAGLR 433 (469)
Q Consensus 354 ~~~~~~~~~~~~~iyni~~~~~vt~~el~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~~l~~~l~ 433 (469)
+++ ..+++||+++++++|+.|+++.+.+.+|.+.........+.++.....+|++|++++|||+|.++++++|+
T Consensus 232 ~~~------~~g~~~~v~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~~~~~l~ 305 (336)
T 2hun_A 232 LKG------ESREIYNISAGEEKTNLEVVKIILRLMGKGEELIELVEDRPGHDLRYSLDSWKITRDLKWRPKYTFDEGIK 305 (336)
T ss_dssp HHC------CTTCEEEECCSCEECHHHHHHHHHHHTTCCSTTEEEECCCTTCCCCCCBCCHHHHHHHCCCCSSCHHHHHH
T ss_pred hCC------CCCCEEEeCCCCcccHHHHHHHHHHHhCCCcccccccCCCCCchhhhcCCHHHHHHHhCCCCCCCHHHHHH
Confidence 764 23589999999999999999999999998754222222334444556789999999999999999999999
Q ss_pred HHHHHHHHHc
Q 012176 434 KFVKWYVSYY 443 (469)
Q Consensus 434 ~~v~~~~~~~ 443 (469)
++++||+++.
T Consensus 306 ~~~~~~~~~~ 315 (336)
T 2hun_A 306 KTIDWYLKNE 315 (336)
T ss_dssp HHHHHHHHTH
T ss_pred HHHHHHHhCc
Confidence 9999998753
|
| >3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-47 Score=383.01 Aligned_cols=312 Identities=21% Similarity=0.318 Sum_probs=262.3
Q ss_pred CCCCCCEEEEEcCCChhHHHHHHHHHHC-CCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCC-CHHHHHHhhcc
Q 012176 114 RRPNGMTVLVTGAAGFVGSHCSLALKKR-GDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLN-DAPLLTKLFDV 191 (469)
Q Consensus 114 ~~~~~~~VlVtGatG~IG~~l~~~L~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~-d~~~l~~~~~~ 191 (469)
..+++|+||||||+||||++|+++|+++ |++|++++|....... .....+++++.+|++ |.+.+.+++++
T Consensus 20 ~~m~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~--------~~~~~~v~~~~~Dl~~d~~~~~~~~~~ 91 (372)
T 3slg_A 20 GSMKAKKVLILGVNGFIGHHLSKRILETTDWEVFGMDMQTDRLGD--------LVKHERMHFFEGDITINKEWVEYHVKK 91 (372)
T ss_dssp ---CCCEEEEESCSSHHHHHHHHHHHHHSSCEEEEEESCCTTTGG--------GGGSTTEEEEECCTTTCHHHHHHHHHH
T ss_pred cccCCCEEEEECCCChHHHHHHHHHHhCCCCEEEEEeCChhhhhh--------hccCCCeEEEeCccCCCHHHHHHHhcc
Confidence 3467789999999999999999999998 9999999997643221 122358999999999 99999999997
Q ss_pred CCccEEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcCccccCCCCCCCCCCCCCCC------C
Q 012176 192 VPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTD------Q 265 (469)
Q Consensus 192 ~~~d~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~------~ 265 (469)
+ |+|||+||.........++...+++|+.++.+++++|++.+ + +|||+||.++||.....+++|++.+. .
T Consensus 92 ~--d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~-~-~~v~~SS~~vyg~~~~~~~~e~~~~~~~~p~~~ 167 (372)
T 3slg_A 92 C--DVILPLVAIATPATYVKQPLRVFELDFEANLPIVRSAVKYG-K-HLVFPSTSEVYGMCADEQFDPDASALTYGPINK 167 (372)
T ss_dssp C--SEEEECBCCCCHHHHHHCHHHHHHHHTTTTHHHHHHHHHHT-C-EEEEECCGGGGBSCCCSSBCTTTCCEEECCTTC
T ss_pred C--CEEEEcCccccHHHHhhCHHHHHHHHHHHHHHHHHHHHHhC-C-cEEEeCcHHHhCCCCCCCCCccccccccCCCCC
Confidence 7 99999999877776778888999999999999999999998 5 99999999999988777888887542 4
Q ss_pred CCChHHHHHHHHHHHHHHHHHHhCCcEEEEeecceecCCCCC--------CChHHHHHHHHHcCCceEEEeeCCCCcceE
Q 012176 266 PASLYAATKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRP--------DMAYFFFTKDILQGKTIDVYKTQDDREVAR 337 (469)
Q Consensus 266 p~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~Gp~~~~--------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 337 (469)
|.+.|+.+|.++|.+++.++.+ |++++++||++||||+... ..++..++..+..++++.++ +++++.+
T Consensus 168 p~~~Y~~sK~~~E~~~~~~~~~-g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~g~~~~ 243 (372)
T 3slg_A 168 PRWIYACSKQLMDRVIWGYGME-GLNFTLFRPFNWIGPGLDSIYTPKEGSSRVVTQFLGHIVRGENISLV---DGGSQKR 243 (372)
T ss_dssp TTHHHHHHHHHHHHHHHHHHTT-TCEEEEEEECSEECSSCCCTTCSBSCSCHHHHHHHHHHHHTCCEEEG---GGGCCEE
T ss_pred CCCcHHHHHHHHHHHHHHHHHC-CCCEEEEccccccCCCcccccccccccchHHHHHHHHHHcCCCcEEe---CCCceEE
Confidence 6678999999999999999988 9999999999999998653 44678889999999999887 6678999
Q ss_pred ecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCC-CCcccHHHHHHHHHHHhCCCccceeecCC--------------C
Q 012176 338 DFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGN-TSPVPVGRLVSILENLLNTKAKKHVIRMP--------------R 402 (469)
Q Consensus 338 ~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~-~~~vt~~el~~~i~~~~g~~~~~~~~~~~--------------~ 402 (469)
+|+|++|+|++++.+++++.. ...+++||+++ ++++|+.|+++.+.+.+|.+..+...+.. .
T Consensus 244 ~~i~v~Dva~a~~~~~~~~~~---~~~~~~~ni~~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (372)
T 3slg_A 244 AFTYVDDGISALMKIIENSNG---VATGKIYNIGNPNNNFSVRELANKMLELAAEFPEYADSAKRVKLVETTSGAYYGNG 320 (372)
T ss_dssp ECEEHHHHHHHHHHHHHCGGG---TTTTEEEEECCTTCEEEHHHHHHHHHHHHHHCTTTHHHHHTCCEEEC---------
T ss_pred EEEEHHHHHHHHHHHHhcccC---cCCCceEEeCCCCCCccHHHHHHHHHHHhCCCcccccccccceeeeccccccccCC
Confidence 999999999999999987631 13569999999 48999999999999999987654433211 0
Q ss_pred CCCCCcccCChHHHHHhcCCCccCcHHHHHHHHHHHHHHHcC
Q 012176 403 NGDVPYTHANVSLAYKDFGYKPTTDLAAGLRKFVKWYVSYYG 444 (469)
Q Consensus 403 ~~~~~~~~~d~~ka~~~LG~~p~~~l~~~l~~~v~~~~~~~~ 444 (469)
..+.....+|++|++++|||+|+++++++|+++++||++...
T Consensus 321 ~~~~~~~~~d~~k~~~~lG~~p~~~l~e~l~~~~~~~~~~~~ 362 (372)
T 3slg_A 321 YQDVQNRVPKIENTMQELGWAPQFTFDDALRQIFEAYRGHVA 362 (372)
T ss_dssp ----CCCCBCCHHHHHHHTCCCCCCHHHHHHHHHHHHTTCHH
T ss_pred ccccceeecCHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 134556788999999999999999999999999999976543
|
| >3ehe_A UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, ST genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; HET: NAD; 1.87A {Archaeoglobus fulgidus} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-45 Score=364.70 Aligned_cols=303 Identities=25% Similarity=0.394 Sum_probs=250.7
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCccEEE
Q 012176 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTHVL 198 (469)
Q Consensus 119 ~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~d~Vi 198 (469)
|+||||||+||||++|+++|+++| .|+++++....... ....++.++.+|++| +.+.++++++ |+||
T Consensus 2 ~~vlVTGatG~iG~~l~~~L~~~g-~~v~~~~~~~~~~~---------~~~~~~~~~~~Dl~~-~~~~~~~~~~--d~vi 68 (313)
T 3ehe_A 2 SLIVVTGGAGFIGSHVVDKLSESN-EIVVIDNLSSGNEE---------FVNEAARLVKADLAA-DDIKDYLKGA--EEVW 68 (313)
T ss_dssp -CEEEETTTSHHHHHHHHHHTTTS-CEEEECCCSSCCGG---------GSCTTEEEECCCTTT-SCCHHHHTTC--SEEE
T ss_pred CEEEEECCCchHHHHHHHHHHhCC-CEEEEEcCCCCChh---------hcCCCcEEEECcCCh-HHHHHHhcCC--CEEE
Confidence 689999999999999999999999 55555553322111 113478999999999 8899999866 9999
Q ss_pred EcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcCccccCCCCCCCCCCCCCCCCCCChHHHHHHHHH
Q 012176 199 HLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGE 278 (469)
Q Consensus 199 h~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y~~sK~~~E 278 (469)
|+|+........++++..+++|+.++.+++++|++.+++ +|||+||.++||.....+++|+++. .|.+.|+.+|.++|
T Consensus 69 h~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~-~iv~~SS~~vyg~~~~~~~~E~~~~-~~~~~Y~~sK~~~e 146 (313)
T 3ehe_A 69 HIAANPDVRIGAENPDEIYRNNVLATYRLLEAMRKAGVS-RIVFTSTSTVYGEAKVIPTPEDYPT-HPISLYGASKLACE 146 (313)
T ss_dssp ECCCCCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHTCC-EEEEECCGGGGCSCSSSSBCTTSCC-CCCSHHHHHHHHHH
T ss_pred ECCCCCChhhhhhCHHHHHHHHHHHHHHHHHHHHHcCCC-eEEEeCchHHhCcCCCCCCCCCCCC-CCCCHHHHHHHHHH
Confidence 999976666677889999999999999999999999876 9999999999998888889998876 78899999999999
Q ss_pred HHHHHHHHHhCCcEEEEeecceecCCCCCCChHHHHHHHHHcC-CceEEEeeCCCCcceEecccHHHHHHHHHHHhccCC
Q 012176 279 EIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQG-KTIDVYKTQDDREVARDFTYIDDVVKGCVGATGSGG 357 (469)
Q Consensus 279 ~~~~~~~~~~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~v~v~Dva~~~~~~~~~~~ 357 (469)
.+++.++.++|++++++||++||||+... ..+..++..+..+ .++.++ +++++.++|+|++|+|++++.+++.
T Consensus 147 ~~~~~~~~~~g~~~~ilRp~~v~G~~~~~-~~~~~~~~~~~~~~~~~~~~---~~g~~~~~~i~v~Dva~a~~~~~~~-- 220 (313)
T 3ehe_A 147 ALIESYCHTFDMQAWIYRFANVIGRRSTH-GVIYDFIMKLKRNPEELEIL---GNGEQNKSYIYISDCVDAMLFGLRG-- 220 (313)
T ss_dssp HHHHHHHHHTTCEEEEEECSCEESTTCCC-SHHHHHHHHHHHCTTEEEES---TTSCCEECCEEHHHHHHHHHHHTTC--
T ss_pred HHHHHHHHhcCCCEEEEeeccccCcCCCc-ChHHHHHHHHHcCCCceEEe---CCCCeEEeEEEHHHHHHHHHHHhcc--
Confidence 99999999999999999999999997764 4566777777766 556666 7788999999999999999999973
Q ss_pred CCCCCCCceEEEeCCCCcccHHHHHHHHHHHhCCCccceeecCC--CCCCCCcccCChHHHHHhcCCCccCcHHHHHHHH
Q 012176 358 KKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMP--RNGDVPYTHANVSLAYKDFGYKPTTDLAAGLRKF 435 (469)
Q Consensus 358 ~~~~~~~~~iyni~~~~~vt~~el~~~i~~~~g~~~~~~~~~~~--~~~~~~~~~~d~~ka~~~LG~~p~~~l~~~l~~~ 435 (469)
...+++||+++++++|+.|+++.+.+.+|.+..+...+.+ ..++.....+|++|+ ++|||+|+++++++|+++
T Consensus 221 ----~~~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~d~~k~-~~lG~~p~~~~~e~l~~~ 295 (313)
T 3ehe_A 221 ----DERVNIFNIGSEDQIKVKRIAEIVCEELGLSPRFRFTGGDRGWKGDVPVMLLSIEKL-KRLGWKPRYNSEEAVRMA 295 (313)
T ss_dssp ----CSSEEEEECCCSCCEEHHHHHHHHHHHTTCCCEEEEC------------CCBCCHHH-HHHTCCCSCCHHHHHHHH
T ss_pred ----CCCCceEEECCCCCeeHHHHHHHHHHHhCCCCceEECCCccCCccccceeccCHHHH-HHcCCCCCCCHHHHHHHH
Confidence 2446999999999999999999999999998766654432 234556678999999 469999999999999999
Q ss_pred HHHHHHHcCCCC
Q 012176 436 VKWYVSYYGIQP 447 (469)
Q Consensus 436 v~~~~~~~~~~~ 447 (469)
++||+++.+.+.
T Consensus 296 ~~~~~~~~~~~~ 307 (313)
T 3ehe_A 296 VRDLVEDLDEEG 307 (313)
T ss_dssp HHHHHHHHHC--
T ss_pred HHHHHhCccccc
Confidence 999999887653
|
| >4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-46 Score=371.91 Aligned_cols=300 Identities=25% Similarity=0.243 Sum_probs=256.5
Q ss_pred CCCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCC
Q 012176 114 RRPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVP 193 (469)
Q Consensus 114 ~~~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~ 193 (469)
...++|+||||||+||||++|+++|+++|++|++++|.... .+++++.+|++|.+.+.++++++
T Consensus 15 ~~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~---------------~~~~~~~~Dl~d~~~~~~~~~~~- 78 (347)
T 4id9_A 15 VPRGSHMILVTGSAGRVGRAVVAALRTQGRTVRGFDLRPSG---------------TGGEEVVGSLEDGQALSDAIMGV- 78 (347)
T ss_dssp ------CEEEETTTSHHHHHHHHHHHHTTCCEEEEESSCCS---------------SCCSEEESCTTCHHHHHHHHTTC-
T ss_pred cccCCCEEEEECCCChHHHHHHHHHHhCCCEEEEEeCCCCC---------------CCccEEecCcCCHHHHHHHHhCC-
Confidence 34677899999999999999999999999999999996542 47889999999999999999976
Q ss_pred ccEEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcCccccCC--CCCCCCCCCCCCCCCCChHH
Q 012176 194 FTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGL--NTQVPFSESHRTDQPASLYA 271 (469)
Q Consensus 194 ~d~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS~~vyg~--~~~~~~~E~~~~~~p~~~Y~ 271 (469)
|+|||+|+..... ....+.++++|+.++.+++++|++.+++ +|||+||.+|||. ....+++|+++. .|.+.|+
T Consensus 79 -d~vih~A~~~~~~--~~~~~~~~~~nv~~~~~ll~a~~~~~~~-~~V~~SS~~vyg~~~~~~~~~~E~~~~-~~~~~Y~ 153 (347)
T 4id9_A 79 -SAVLHLGAFMSWA--PADRDRMFAVNVEGTRRLLDAASAAGVR-RFVFASSGEVYPENRPEFLPVTEDHPL-CPNSPYG 153 (347)
T ss_dssp -SEEEECCCCCCSS--GGGHHHHHHHHTHHHHHHHHHHHHTTCS-EEEEEEEGGGTTTTSCSSSSBCTTSCC-CCCSHHH
T ss_pred -CEEEECCcccCcc--hhhHHHHHHHHHHHHHHHHHHHHHcCCC-eEEEECCHHHhCCCCCCCCCcCCCCCC-CCCChHH
Confidence 9999999975433 2334789999999999999999999986 9999999999997 566689999877 7889999
Q ss_pred HHHHHHHHHHHHHHHHhCCcEEEEeeccee-------------cCCCCC-----------CChHHHHHHHHHcCCceEEE
Q 012176 272 ATKKAGEEIAHTYNHIYGLALTGLRFFTVY-------------GPWGRP-----------DMAYFFFTKDILQGKTIDVY 327 (469)
Q Consensus 272 ~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~-------------Gp~~~~-----------~~~~~~~~~~~~~g~~~~~~ 327 (469)
.+|.++|.+++.+++++|+++++|||+.|| ||+... ...+..++..+..+.++.++
T Consensus 154 ~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~~~~~~~~~~~~~~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (347)
T 4id9_A 154 LTKLLGEELVRFHQRSGAMETVILRFSHTQDATELLDEDSFFSGPRFFLRPRIHQQQNFGNAAIAELLQSRDIGEPSHIL 233 (347)
T ss_dssp HHHHHHHHHHHHHHHHSSSEEEEEEECEEECGGGTTCTTSSSHHHHHBHHHHHHHHHHHTCHHHHHHHHHHCCSSCCEEE
T ss_pred HHHHHHHHHHHHHHHhcCCceEEEccceEeecccccccccccCCCCcccccccccccccchhHHHHHHHHHHcCCCeEEe
Confidence 999999999999999999999999999999 876432 35667888889999998888
Q ss_pred eeCCCCcceEec----ccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCCcccHHHHHHHHHHHhCCCccceeecCCCC
Q 012176 328 KTQDDREVARDF----TYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRN 403 (469)
Q Consensus 328 ~~~~~~~~~~~~----v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~~vt~~el~~~i~~~~g~~~~~~~~~~~~~ 403 (469)
+++++.++| +|++|+|++++.+++++. ..+++||+++++++|+.|+++.+.+.+|.+......|..
T Consensus 234 ---g~~~~~~~~~~~~i~v~Dva~ai~~~~~~~~-----~~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~p~~-- 303 (347)
T 4id9_A 234 ---ARNENGRPFRMHITDTRDMVAGILLALDHPE-----AAGGTFNLGADEPADFAALLPKIAALTGLPIVTVDFPGD-- 303 (347)
T ss_dssp ---EECTTCCBCEECEEEHHHHHHHHHHHHHCGG-----GTTEEEEESCSSCEEHHHHHHHHHHHHCCCEEEEECSSC--
T ss_pred ---CCCCcccCCccCcEeHHHHHHHHHHHhcCcc-----cCCCeEEECCCCcccHHHHHHHHHHHhCCCCceeeCCCc--
Confidence 457888899 999999999999998762 345999999999999999999999999998766544432
Q ss_pred CCCCcccCChHHHHHhcCCCccCcHHHHHHHHHHHHHHHcCCC
Q 012176 404 GDVPYTHANVSLAYKDFGYKPTTDLAAGLRKFVKWYVSYYGIQ 446 (469)
Q Consensus 404 ~~~~~~~~d~~ka~~~LG~~p~~~l~~~l~~~v~~~~~~~~~~ 446 (469)
.....+|++|++++|||+|+++++++|+++++||++....+
T Consensus 304 --~~~~~~d~~k~~~~lG~~p~~~~~~~l~~~~~~~~~~~~~~ 344 (347)
T 4id9_A 304 --GVYYHTSNERIRNTLGFEAEWTMDRMLEEAATARRQRLAKE 344 (347)
T ss_dssp --CCBCCBCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCC--
T ss_pred --ccccccCHHHHHHHhCCCCCCCHHHHHHHHHHHHHhhhhcc
Confidence 22678999999999999999999999999999999988754
|
| >1r6d_A TDP-glucose-4,6-dehydratase; rossmann fold, short-chain dehydrogenase/reductase, lyase; HET: NAD DAU; 1.35A {Streptomyces venezuelae} SCOP: c.2.1.2 PDB: 1r66_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-44 Score=360.60 Aligned_cols=308 Identities=27% Similarity=0.438 Sum_probs=260.3
Q ss_pred CEEEEEcCCChhHHHHHHHHHHC---C---CcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccC
Q 012176 119 MTVLVTGAAGFVGSHCSLALKKR---G---DGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV 192 (469)
Q Consensus 119 ~~VlVtGatG~IG~~l~~~L~~~---G---~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~ 192 (469)
|+||||||+||||++|+++|+++ | ++|++++|......... ........+++++.+|++|++.+++++.++
T Consensus 1 M~vlVTGatG~iG~~l~~~L~~~~~~g~~~~~V~~~~r~~~~~~~~~---~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~ 77 (337)
T 1r6d_A 1 MRLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRAN---LAPVDADPRLRFVHGDIRDAGLLARELRGV 77 (337)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTSCTTSCCSEEEEEECCCTTCCGGG---GGGGTTCTTEEEEECCTTCHHHHHHHTTTC
T ss_pred CeEEEECCccHHHHHHHHHHHhhhcCCCCceEEEEEECCCccCchhh---hhhcccCCCeEEEEcCCCCHHHHHHHhcCC
Confidence 68999999999999999999997 8 99999999653211110 011112358999999999999999999766
Q ss_pred CccEEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcCccccCCCCCCCCCCCCCCCCCCChHHH
Q 012176 193 PFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAA 272 (469)
Q Consensus 193 ~~d~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y~~ 272 (469)
|+|||+||......+..+++.++++|+.++.+++++|++.+++ +|||+||.++||.....+++|+++. .|.+.|+.
T Consensus 78 --d~Vih~A~~~~~~~~~~~~~~~~~~Nv~~~~~l~~a~~~~~~~-~~v~~SS~~vyg~~~~~~~~E~~~~-~~~~~Y~~ 153 (337)
T 1r6d_A 78 --DAIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDAGVG-RVVHVSTNQVYGSIDSGSWTESSPL-EPNSPYAA 153 (337)
T ss_dssp --CEEEECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHTTCC-EEEEEEEGGGGCCCSSSCBCTTSCC-CCCSHHHH
T ss_pred --CEEEECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCC-EEEEecchHHhCCCCCCCCCCCCCC-CCCCchHH
Confidence 9999999987655566788899999999999999999999876 9999999999997766788888876 68899999
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceEecccHHHHHHHHHHH
Q 012176 273 TKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGA 352 (469)
Q Consensus 273 sK~~~E~~~~~~~~~~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~~~~~~ 352 (469)
+|.++|.+++.++.++|++++++||+.||||+..+..++..++..+..++++.++ +++++.++|+|++|+|++++.+
T Consensus 154 sK~~~e~~~~~~~~~~g~~~~ilrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~i~v~Dva~a~~~~ 230 (337)
T 1r6d_A 154 SKAGSDLVARAYHRTYGLDVRITRCCNNYGPYQHPEKLIPLFVTNLLDGGTLPLY---GDGANVREWVHTDDHCRGIALV 230 (337)
T ss_dssp HHHHHHHHHHHHHHHHCCCEEEEEECEEECTTCCTTSHHHHHHHHHHTTCCEEEE---TTSCCEEEEEEHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEeeeeECCCCCCCChHHHHHHHHhcCCCcEEe---CCCCeeEeeEeHHHHHHHHHHH
Confidence 9999999999999888999999999999999876666777888888999988887 6788999999999999999999
Q ss_pred hccCCCCCCCCCceEEEeCCCCcccHHHHHHHHHHHhCCCccceeecCCCCCCCCcccCChHHHHHhcCCCccCcHHHHH
Q 012176 353 TGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRNGDVPYTHANVSLAYKDFGYKPTTDLAAGL 432 (469)
Q Consensus 353 ~~~~~~~~~~~~~~iyni~~~~~vt~~el~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~~l~~~l 432 (469)
++++ ..+++||+++++++|+.|+++.+.+.+|.+.........+.+....+.+|++|++++|||+|.++++++|
T Consensus 231 ~~~~------~~g~~~~v~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~~~e~l 304 (337)
T 1r6d_A 231 LAGG------RAGEIYHIGGGLELTNRELTGILLDSLGADWSSVRKVADRKGHDLRYSLDGGKIERELGYRPQVSFADGL 304 (337)
T ss_dssp HHHC------CTTCEEEECCCCEEEHHHHHHHHHHHHTCCGGGEEEECCCTTCCCBCCBCCHHHHHHHCCCCCSCHHHHH
T ss_pred HhCC------CCCCEEEeCCCCCccHHHHHHHHHHHhCCCcccceecCCCCCCcceeecCHHHHHHHcCCCCCCCHHHHH
Confidence 8764 1358999999999999999999999999875433222233444445678999999999999999999999
Q ss_pred HHHHHHHHHH
Q 012176 433 RKFVKWYVSY 442 (469)
Q Consensus 433 ~~~v~~~~~~ 442 (469)
+++++||++.
T Consensus 305 ~~~~~~~~~~ 314 (337)
T 1r6d_A 305 ARTVRWYREN 314 (337)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHhc
Confidence 9999999875
|
| >1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-45 Score=362.69 Aligned_cols=315 Identities=22% Similarity=0.200 Sum_probs=260.8
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCcc
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFT 195 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~d 195 (469)
..+|+||||||+||||++|+++|+++|++|++++|.......... .......+++++.+|++|.+.+.++++++++|
T Consensus 12 ~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~---~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 88 (335)
T 1rpn_A 12 SMTRSALVTGITGQDGAYLAKLLLEKGYRVHGLVARRSSDTRWRL---RELGIEGDIQYEDGDMADACSVQRAVIKAQPQ 88 (335)
T ss_dssp ---CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCHHH---HHTTCGGGEEEEECCTTCHHHHHHHHHHHCCS
T ss_pred ccCCeEEEECCCChHHHHHHHHHHHCCCeEEEEeCCCccccccch---hhccccCceEEEECCCCCHHHHHHHHHHcCCC
Confidence 467899999999999999999999999999999997654321111 11112347899999999999999999987789
Q ss_pred EEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcCccccCCCCCCCCCCCCCCCCCCChHHHHHH
Q 012176 196 HVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKK 275 (469)
Q Consensus 196 ~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y~~sK~ 275 (469)
+|||+||.........++...+++|+.++.+++++|++.++.++|||+||.++||.....+++|+++. .|.+.|+.+|.
T Consensus 89 ~Vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~v~~SS~~v~g~~~~~~~~E~~~~-~p~~~Y~~sK~ 167 (335)
T 1rpn_A 89 EVYNLAAQSFVGASWNQPVTTGVVDGLGVTHLLEAIRQFSPETRFYQASTSEMFGLIQAERQDENTPF-YPRSPYGVAKL 167 (335)
T ss_dssp EEEECCSCCCHHHHTTSHHHHHHHHTHHHHHHHHHHHHHCTTSEEEEEEEGGGGCSCSSSSBCTTSCC-CCCSHHHHHHH
T ss_pred EEEECccccchhhhhhChHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeCHHHhCCCCCCCCCcccCC-CCCChhHHHHH
Confidence 99999998766656678889999999999999999999886349999999999998777789998877 78899999999
Q ss_pred HHHHHHHHHHHHhCCcEEEEeecceecCCCCCCC---hHHHHHHHHHcCCce-EEEeeCCCCcceEecccHHHHHHHHHH
Q 012176 276 AGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPDM---AYFFFTKDILQGKTI-DVYKTQDDREVARDFTYIDDVVKGCVG 351 (469)
Q Consensus 276 ~~E~~~~~~~~~~gi~~~ilRp~~v~Gp~~~~~~---~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~v~v~Dva~~~~~ 351 (469)
++|.+++.++.+++++++++||+.+|||+..... .+..++..+..|+.. ..+ +++++.++|+|++|+|++++.
T Consensus 168 ~~e~~~~~~~~~~~~~~~i~r~~~v~Gp~~~~~~~~~~~~~~~~~~~~g~~~~~~~---g~g~~~~~~i~v~Dva~a~~~ 244 (335)
T 1rpn_A 168 YGHWITVNYRESFGLHASSGILFNHESPLRGIEFVTRKVTDAVARIKLGKQQELRL---GNVDAKRDWGFAGDYVEAMWL 244 (335)
T ss_dssp HHHHHHHHHHHHHCCCEEEEEECCEECTTSCTTSHHHHHHHHHHHHHTTSCSCEEE---SCTTCEEECEEHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcEEEEeeCcccCCCCCCCcchHHHHHHHHHHHcCCCceEEe---CCCcceeceEEHHHHHHHHHH
Confidence 9999999999888999999999999999765443 245566677778744 344 668899999999999999999
Q ss_pred HhccCCCCCCCCCceEEEeCCCCcccHHHHHHHHHHHhCCCccc-eeec--CCCCCCCCcccCChHHHHHhcCCCccCcH
Q 012176 352 ATGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKK-HVIR--MPRNGDVPYTHANVSLAYKDFGYKPTTDL 428 (469)
Q Consensus 352 ~~~~~~~~~~~~~~~iyni~~~~~vt~~el~~~i~~~~g~~~~~-~~~~--~~~~~~~~~~~~d~~ka~~~LG~~p~~~l 428 (469)
+++++. +++||+++++++|+.|+++.+.+.+|.+... ...+ ..+..+.....+|++|++++|||+|++++
T Consensus 245 ~~~~~~-------~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~l 317 (335)
T 1rpn_A 245 MLQQDK-------ADDYVVATGVTTTVRDMCQIAFEHVGLDYRDFLKIDPAFFRPAEVDVLLGNPAKAQRVLGWKPRTSL 317 (335)
T ss_dssp HHHSSS-------CCCEEECCSCEEEHHHHHHHHHHTTTCCGGGTEEECGGGCCSSCCCBCCBCTHHHHHHHCCCCCSCH
T ss_pred HHhcCC-------CCEEEEeCCCCccHHHHHHHHHHHhCCCccccccccccccCCCcchhhcCCHHHHHHhcCCCcCCCH
Confidence 998752 2899999999999999999999999986431 1121 12344556677899999999999999999
Q ss_pred HHHHHHHHHHHHHHcC
Q 012176 429 AAGLRKFVKWYVSYYG 444 (469)
Q Consensus 429 ~~~l~~~v~~~~~~~~ 444 (469)
+++|+++++||++..+
T Consensus 318 ~e~l~~~~~~~~~~~~ 333 (335)
T 1rpn_A 318 DELIRMMVEADLRRVS 333 (335)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhc
Confidence 9999999999988764
|
| >4b8w_A GDP-L-fucose synthase; oxidoreductase; HET: NAP GDP; 2.75A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-45 Score=363.35 Aligned_cols=300 Identities=18% Similarity=0.213 Sum_probs=256.3
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCcc
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFT 195 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~d 195 (469)
+++|+||||||+||||++|+++|+++|+ +.. ....+++.+.+|++|.+.+.+++++.++|
T Consensus 4 ~~~~~vlVtGatG~iG~~l~~~L~~~g~------~~~--------------~~~~~~~~~~~D~~d~~~~~~~~~~~~~d 63 (319)
T 4b8w_A 4 FQSMRILVTGGSGLVGKAIQKVVADGAG------LPG--------------EDWVFVSSKDADLTDTAQTRALFEKVQPT 63 (319)
T ss_dssp CCCCEEEEETCSSHHHHHHHHHHHTTTC------CTT--------------CEEEECCTTTCCTTSHHHHHHHHHHSCCS
T ss_pred ccCCeEEEECCCcHHHHHHHHHHHhcCC------ccc--------------ccccccCceecccCCHHHHHHHHhhcCCC
Confidence 5779999999999999999999999998 100 01124455679999999999999986779
Q ss_pred EEEEcccccC-hhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcCccccCCCCCCCCCCCC----CCCCCCC-h
Q 012176 196 HVLHLAAQAG-VRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESH----RTDQPAS-L 269 (469)
Q Consensus 196 ~Vih~Aa~~~-~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~----~~~~p~~-~ 269 (469)
+|||+||... ......++...+++|+.++.+++++|++.+++ +|||+||.++||.....+++|++ +. .|.+ .
T Consensus 64 ~Vih~A~~~~~~~~~~~~~~~~~~~nv~gt~~ll~a~~~~~~~-~~v~~SS~~vyg~~~~~~~~E~~~~~~~~-~p~~~~ 141 (319)
T 4b8w_A 64 HVIHLAAMVGGLFRNIKYNLDFWRKNVHMNDNVLHSAFEVGAR-KVVSCLSTCIFPDKTTYPIDETMIHNGPP-HNSNFG 141 (319)
T ss_dssp EEEECCCCCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHTTCS-EEEEECCGGGSCSSCCSSBCGGGGGBSCC-CSSSHH
T ss_pred EEEECceecccccccccCHHHHHHHHHHHHHHHHHHHHHcCCC-eEEEEcchhhcCCCCCCCccccccccCCC-CCCcch
Confidence 9999999854 34566788899999999999999999999986 99999999999988888999987 44 4555 5
Q ss_pred HHHHHHHHHHHHHHHHHHhCCcEEEEeecceecCCCCCC----ChHHHHHHH----HHcCCceEEEeeCCCCcceEeccc
Q 012176 270 YAATKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPD----MAYFFFTKD----ILQGKTIDVYKTQDDREVARDFTY 341 (469)
Q Consensus 270 Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~Gp~~~~~----~~~~~~~~~----~~~g~~~~~~~~~~~~~~~~~~v~ 341 (469)
|+.+|.++|.+++.+++++|++++++||++||||+.... ..++.++.. +..+.++.++ +++++.++|+|
T Consensus 142 Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~g~~~~~~i~ 218 (319)
T 4b8w_A 142 YSYAKRMIDVQNRAYFQQYGCTFTAVIPTNVFGPHDNFNIEDGHVLPGLIHKVHLAKSSGSALTVW---GTGNPRRQFIY 218 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECTTCCCCTTTSCHHHHHHHHHHHHHHHTCCEEEE---SCSCCEECEEE
T ss_pred HHHHHHHHHHHHHHHHHhhCCCEEEEeeccccCCCCCCCCccccccHHHHHHHHHHhccCCceEEe---CCCCeeEEEEe
Confidence 999999999999999998999999999999999987542 355666666 7889999888 77899999999
Q ss_pred HHHHHHHHHHHhccCCCCCCCCCceEEEeCCCCcccHHHHHHHHHHHhCCCccceeecCCCCCCCCcccCChHHHHHhcC
Q 012176 342 IDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRNGDVPYTHANVSLAYKDFG 421 (469)
Q Consensus 342 v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~~vt~~el~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~d~~ka~~~LG 421 (469)
++|+|++++.+++++. ...+++||+++++++|+.|+++.+.+.+|.+..+...+.. ..+.....+|++|++++||
T Consensus 219 v~Dva~a~~~~~~~~~----~~~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~-~~~~~~~~~d~~k~~~~lg 293 (319)
T 4b8w_A 219 SLDLAQLFIWVLREYN----EVEPIILSVGEEDEVSIKEAAEAVVEAMDFHGEVTFDTTK-SDGQFKKTASNSKLRTYLP 293 (319)
T ss_dssp HHHHHHHHHHHHHHCC----CSSCEEECCCGGGCEEHHHHHHHHHHHTTCCSCEEEETTS-CCCCSCCCBCCHHHHHHCT
T ss_pred HHHHHHHHHHHHhccc----cCCceEEEecCCCceeHHHHHHHHHHHhCCCCcEEeCCCC-CcCcccccCCHHHHHHhcC
Confidence 9999999999998753 2345899999999999999999999999998877766543 4455667899999999999
Q ss_pred CCccCcHHHHHHHHHHHHHHHcCC
Q 012176 422 YKPTTDLAAGLRKFVKWYVSYYGI 445 (469)
Q Consensus 422 ~~p~~~l~~~l~~~v~~~~~~~~~ 445 (469)
|+|.++++++|+++++||+++.+.
T Consensus 294 ~~p~~~~~~~l~~~~~~~~~~~~~ 317 (319)
T 4b8w_A 294 DFRFTPFKQAVKETCAWFTDNYEQ 317 (319)
T ss_dssp TCCCCCHHHHHHHHHHHHHHSCSS
T ss_pred CCCCCCHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999887653
|
| >2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose metabolism, isomerase, NAD, spine; HET: NAD; 2.7A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-45 Score=361.43 Aligned_cols=314 Identities=24% Similarity=0.341 Sum_probs=258.4
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCccEE
Q 012176 118 GMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTHV 197 (469)
Q Consensus 118 ~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~d~V 197 (469)
+|+||||||+||||++|+++|+++|++|++++|....... .+. .+++++.+|++|.+.++++++..++|+|
T Consensus 1 M~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~--------~~~-~~~~~~~~D~~~~~~~~~~~~~~~~d~v 71 (330)
T 2c20_A 1 MNSILICGGAGYIGSHAVKKLVDEGLSVVVVDNLQTGHED--------AIT-EGAKFYNGDLRDKAFLRDVFTQENIEAV 71 (330)
T ss_dssp -CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCGG--------GSC-TTSEEEECCTTCHHHHHHHHHHSCEEEE
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCCCcCchh--------hcC-CCcEEEECCCCCHHHHHHHHhhcCCCEE
Confidence 3789999999999999999999999999999986543211 111 2789999999999999999984455999
Q ss_pred EEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcCccccCCCCCCCCCCCCCCCCCCChHHHHHHHH
Q 012176 198 LHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAG 277 (469)
Q Consensus 198 ih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y~~sK~~~ 277 (469)
||+||.........+++.++++|+.++.+++++|++.+++ +|||+||.++|+.....+++|+++. .|.+.|+.+|.++
T Consensus 72 ih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~-~~v~~Ss~~~~~~~~~~~~~E~~~~-~~~~~Y~~sK~~~ 149 (330)
T 2c20_A 72 MHFAADSLVGVSMEKPLQYYNNNVYGALCLLEVMDEFKVD-KFIFSSTAATYGEVDVDLITEETMT-NPTNTYGETKLAI 149 (330)
T ss_dssp EECCCCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTCC-EEEEECCGGGGCSCSSSSBCTTSCC-CCSSHHHHHHHHH
T ss_pred EECCcccCccccccCHHHHHHHHhHHHHHHHHHHHHcCCC-EEEEeCCceeeCCCCCCCCCcCCCC-CCCChHHHHHHHH
Confidence 9999986655556788899999999999999999999876 9999999999998777789999877 7889999999999
Q ss_pred HHHHHHHHHHhCCcEEEEeecceecCCCC---------CCChHHHHHHHHHc-CCceEEEee---CCCCcceEecccHHH
Q 012176 278 EEIAHTYNHIYGLALTGLRFFTVYGPWGR---------PDMAYFFFTKDILQ-GKTIDVYKT---QDDREVARDFTYIDD 344 (469)
Q Consensus 278 E~~~~~~~~~~gi~~~ilRp~~v~Gp~~~---------~~~~~~~~~~~~~~-g~~~~~~~~---~~~~~~~~~~v~v~D 344 (469)
|.+++.++.++|++++++||++||||+.. ...++..+++.+.. +.++.+++. ..++++.++|+|++|
T Consensus 150 e~~~~~~~~~~~~~~~ilrp~~v~G~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~v~v~D 229 (330)
T 2c20_A 150 EKMLHWYSQASNLRYKIFRYFNVAGATPNGIIGEDHRPETHLIPLVLQVALGQREKIMMFGDDYNTPDGTCIRDYIHVED 229 (330)
T ss_dssp HHHHHHHHHTSSCEEEEEECSEEECCCTTCSSCCCCSSCCSHHHHHHHHHTTSSSCEEEECSCCSSSSSSCEECEEEHHH
T ss_pred HHHHHHHHHHhCCcEEEEecCcccCCCCcCccccccccccchHHHHHHHHhhcCCCeEEeCCccccCCCceeEeeEeHHH
Confidence 99999999888999999999999999621 23455555555443 345666621 015788999999999
Q ss_pred HHHHHHHHhccCCCCCCCCCceEEEeCCCCcccHHHHHHHHHHHhCCCccceeecCCCCCCCCcccCChHHHHHhcCCCc
Q 012176 345 VVKGCVGATGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRNGDVPYTHANVSLAYKDFGYKP 424 (469)
Q Consensus 345 va~~~~~~~~~~~~~~~~~~~~iyni~~~~~vt~~el~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~d~~ka~~~LG~~p 424 (469)
+|++++.+++++.. ...+++||+++++++|+.|+++.+.+.+|.+.+....+. ..++.....+|++|++++|||+|
T Consensus 230 va~a~~~~~~~~~~---~~~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~-~~~~~~~~~~d~~k~~~~lG~~p 305 (330)
T 2c20_A 230 LVAAHFLGLKDLQN---GGESDFYNLGNGNGFSVKEIVDAVREVTNHEIPAEVAPR-RAGDPARLVASSQKAKEKLGWDP 305 (330)
T ss_dssp HHHHHHHHHHHHHT---TCCCEEEECCCTTCBCHHHHHHHHHHHTTSCCCEEEECC-CSSCCSEECBCCHHHHHHHCCCC
T ss_pred HHHHHHHHHhcccc---CCCCCeEEeCCCCCccHHHHHHHHHHHhCCCCceeeCCC-CCCcccccccCHHHHHHHhCCCC
Confidence 99999999876421 112489999999999999999999999998876655543 34456677899999999999999
Q ss_pred cC-cHHHHHHHHHHHHHHHcCCC
Q 012176 425 TT-DLAAGLRKFVKWYVSYYGIQ 446 (469)
Q Consensus 425 ~~-~l~~~l~~~v~~~~~~~~~~ 446 (469)
++ +++++|+++++||+++.+.+
T Consensus 306 ~~~~l~~~l~~~~~~~~~~~~~~ 328 (330)
T 2c20_A 306 RYVNVKTIIEHAWNWHQKQPNGY 328 (330)
T ss_dssp SCCCHHHHHHHHHHHHHHCSSCC
T ss_pred ccCCHHHHHHHHHHHHHHhhhcc
Confidence 98 99999999999998876543
|
| >1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A {Salmonella typhi} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-45 Score=362.72 Aligned_cols=314 Identities=22% Similarity=0.316 Sum_probs=256.9
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCccEEE
Q 012176 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTHVL 198 (469)
Q Consensus 119 ~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~d~Vi 198 (469)
|+||||||+||||++|+++|+++|++|++++|...... ...........+++++.+|++|.+.+++++++.++|+||
T Consensus 2 ~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~---~~~~~~l~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vi 78 (347)
T 1orr_A 2 AKLLITGGCGFLGSNLASFALSQGIDLIVFDNLSRKGA---TDNLHWLSSLGNFEFVHGDIRNKNDVTRLITKYMPDSCF 78 (347)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSTTH---HHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHCCSEEE
T ss_pred cEEEEeCCCchhHHHHHHHHHhCCCEEEEEeCCCccCc---hhhhhhhccCCceEEEEcCCCCHHHHHHHHhccCCCEEE
Confidence 68999999999999999999999999999998542211 111111222346899999999999999999984459999
Q ss_pred EcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcCccccCCCCCCC----------------CCCCCC
Q 012176 199 HLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVP----------------FSESHR 262 (469)
Q Consensus 199 h~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS~~vyg~~~~~~----------------~~E~~~ 262 (469)
||||........++++..+++|+.++.+++++|++.+++++|||+||.++||.....+ ++|+++
T Consensus 79 h~A~~~~~~~~~~~~~~~~~~nv~~~~~l~~a~~~~~~~~~iv~~SS~~v~g~~~~~~~~e~~~~~~~~~~~~~~~e~~~ 158 (347)
T 1orr_A 79 HLAGQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQYNSNCNIIYSSTNKVYGDLEQYKYNETETRYTCVDKPNGYDESTQ 158 (347)
T ss_dssp ECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEEEGGGGTTCTTSCEEECSSCEEETTCTTCBCTTSC
T ss_pred ECCcccChhhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEeccHHHhCCCCcCCcccccccccccccccCccccCC
Confidence 9999866655567888999999999999999999988755999999999998654433 455555
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHhCCcEEEEeecceecCCCCCC---ChHHHHHHHHHcCC-----ceEEEeeCCCCc
Q 012176 263 TDQPASLYAATKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPD---MAYFFFTKDILQGK-----TIDVYKTQDDRE 334 (469)
Q Consensus 263 ~~~p~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~Gp~~~~~---~~~~~~~~~~~~g~-----~~~~~~~~~~~~ 334 (469)
. .|.+.|+.+|.++|.+++.++.++|+++++|||+.||||+.... ..+..++..+..+. ++.++ ++++
T Consensus 159 ~-~~~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilrp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---g~g~ 234 (347)
T 1orr_A 159 L-DFHSPYGCSKGAADQYMLDYARIFGLNTVVFRHSSMYGGRQFATYDQGWVGWFCQKAVEIKNGINKPFTIS---GNGK 234 (347)
T ss_dssp C-CCCHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTCCCBTTBCHHHHHHHHHHHHHTTCCCCEEEE---SSSC
T ss_pred C-CCCCchHHHHHHHHHHHHHHHHHhCCcEEEEccCceeCcCCCCCCcCcHHHHHHHHHHhCcccCCCCeEEe---cCCc
Confidence 4 57789999999999999999988899999999999999976432 34566777776665 67776 6789
Q ss_pred ceEecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCC--cccHHHHHHHHHHHhCCCccceeecCCCCCCCCcccCC
Q 012176 335 VARDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTS--PVPVGRLVSILENLLNTKAKKHVIRMPRNGDVPYTHAN 412 (469)
Q Consensus 335 ~~~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~--~vt~~el~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~d 412 (469)
+.++|+|++|+|++++.++++.. ...|++||++++. ++|+.|+++.+.+.+|.+..+...| .+..+.....+|
T Consensus 235 ~~~~~i~v~Dva~a~~~~~~~~~----~~~g~~~~v~~~~~~~~s~~e~~~~i~~~~g~~~~~~~~~-~~~~~~~~~~~d 309 (347)
T 1orr_A 235 QVRDVLHAEDMISLYFTALANVS----KIRGNAFNIGGTIVNSLSLLELFKLLEDYCNIDMRFTNLP-VRESDQRVFVAD 309 (347)
T ss_dssp CEEECEEHHHHHHHHHHHHHTHH----HHTTCEEEESSCGGGEEEHHHHHHHHHHHHTCCCCEEEEC-CCSSCCSEECBC
T ss_pred ceEeeEEHHHHHHHHHHHHhccc----cCCCCEEEeCCCCCCCccHHHHHHHHHHHhCCCCCceeCC-CCCCCcceeecC
Confidence 99999999999999999987521 1235899999986 5999999999999999987766665 345566677899
Q ss_pred hHHHHHhcCCCccCcHHHHHHHHHHHHHHHcC
Q 012176 413 VSLAYKDFGYKPTTDLAAGLRKFVKWYVSYYG 444 (469)
Q Consensus 413 ~~ka~~~LG~~p~~~l~~~l~~~v~~~~~~~~ 444 (469)
++|++++|||+|+++++++|+++++|++++..
T Consensus 310 ~~k~~~~lG~~p~~~~~e~l~~~~~~~~~~~~ 341 (347)
T 1orr_A 310 IKKITNAIDWSPKVSAKDGVQKMYDWTSSILE 341 (347)
T ss_dssp CHHHHHHHCCCCCSCHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHCCCccCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999988754
|
| >1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.8e-45 Score=364.38 Aligned_cols=320 Identities=21% Similarity=0.245 Sum_probs=260.5
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCcc
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFT 195 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~d 195 (469)
.++|+||||||+||||++|+++|+++|++|++++|........... .....+++++.+|++|++.+.+++++.++|
T Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~----~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 82 (357)
T 1rkx_A 7 WQGKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPTVPSLFET----ARVADGMQSEIGDIRDQNKLLESIREFQPE 82 (357)
T ss_dssp HTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCSSSSCHHHH----TTTTTTSEEEECCTTCHHHHHHHHHHHCCS
T ss_pred hCCCEEEEECCCchHHHHHHHHHHhCCCeEEEEeCCCcccchhhHh----hccCCceEEEEccccCHHHHHHHHHhcCCC
Confidence 3568999999999999999999999999999999976543322111 111347899999999999999999986679
Q ss_pred EEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcC-CCCeEEEEcCccccCCCCC-CCCCCCCCCCCCCChHHHH
Q 012176 196 HVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVN-PQPSIVWASSSSVYGLNTQ-VPFSESHRTDQPASLYAAT 273 (469)
Q Consensus 196 ~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~-~~~~~V~~SS~~vyg~~~~-~~~~E~~~~~~p~~~Y~~s 273 (469)
+||||||.........++...+++|+.++.+++++|++.+ ++ +|||+||.++||.... .+++|+++. .|.+.|+.+
T Consensus 83 ~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~-~~v~~SS~~vyg~~~~~~~~~E~~~~-~~~~~Y~~s 160 (357)
T 1rkx_A 83 IVFHMAAQPLVRLSYSEPVETYSTNVMGTVYLLEAIRHVGGVK-AVVNITSDKCYDNKEWIWGYRENEAM-GGYDPYSNS 160 (357)
T ss_dssp EEEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHCCCC-EEEEECCGGGBCCCCSSSCBCTTSCB-CCSSHHHHH
T ss_pred EEEECCCCcccccchhCHHHHHHHHHHHHHHHHHHHHHhCCCC-eEEEecCHHHhCCCCcCCCCCCCCCC-CCCCccHHH
Confidence 9999999755555667888999999999999999999887 54 9999999999987653 467787765 678999999
Q ss_pred HHHHHHHHHHHHHHh---------CCcEEEEeecceecCCCCC-CChHHHHHHHHHcCCceEEEeeCCCCcceEecccHH
Q 012176 274 KKAGEEIAHTYNHIY---------GLALTGLRFFTVYGPWGRP-DMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYID 343 (469)
Q Consensus 274 K~~~E~~~~~~~~~~---------gi~~~ilRp~~v~Gp~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~ 343 (469)
|.++|.+++.++.++ |++++++||+.||||+... ..++..+++.+..|.++.+. ++++.++|+|++
T Consensus 161 K~~~e~~~~~~~~~~~~~~~~~~~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~----~~~~~~~~v~v~ 236 (357)
T 1rkx_A 161 KGCAELVTSSYRNSFFNPANYGQHGTAVATVRAGNVIGGGDWALDRIVPDILRAFEQSQPVIIR----NPHAIRPWQHVL 236 (357)
T ss_dssp HHHHHHHHHHHHHHHSCGGGHHHHCCEEEEEECCCEECTTCCCSSCHHHHHHHHHHTTCCEECS----CTTCEECCEETH
T ss_pred HHHHHHHHHHHHHHHhhhhccccCCceEEEEeeceeeCCCCCccccHHHHHHHHHhcCCCEEEC----CCCCeeccEeHH
Confidence 999999999998765 9999999999999997643 35677888888899887653 367889999999
Q ss_pred HHHHHHHHHhccCCCCCCCCCceEEEeCCC--CcccHHHHHHHHHHHhCCCccceeecCCCCCCCCcccCChHHHHHhcC
Q 012176 344 DVVKGCVGATGSGGKKRGPAQLRVYNLGNT--SPVPVGRLVSILENLLNTKAKKHVIRMPRNGDVPYTHANVSLAYKDFG 421 (469)
Q Consensus 344 Dva~~~~~~~~~~~~~~~~~~~~iyni~~~--~~vt~~el~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~d~~ka~~~LG 421 (469)
|+|++++.++++... .+...+++||++++ +++|+.|+++.+.+.+|.+..+...+.+...+.....+|++|++++||
T Consensus 237 Dva~a~~~~~~~~~~-~~~~~~~~~ni~~~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG 315 (357)
T 1rkx_A 237 EPLSGYLLLAQKLYT-DGAEYAEGWNFGPNDADATPVKNIVEQMVKYWGEGASWQLDGNAHPHEAHYLKLDCSKAKMQLG 315 (357)
T ss_dssp HHHHHHHHHHHHHHH-TCGGGCSEEECCCCGGGCEEHHHHHHHHHHHHCTTCCEEC-------CCCCCCBCCHHHHHHHC
T ss_pred HHHHHHHHHHHhhhh-cCCCCCceEEECCCCCCcccHHHHHHHHHHHhCCCCccccCCCCCCcCcccccCCHHHHHHHhC
Confidence 999999998874100 00123589999984 689999999999999998876554443334556677899999999999
Q ss_pred CCccCcHHHHHHHHHHHHHHHcCCC
Q 012176 422 YKPTTDLAAGLRKFVKWYVSYYGIQ 446 (469)
Q Consensus 422 ~~p~~~l~~~l~~~v~~~~~~~~~~ 446 (469)
|+|+++++++|+++++||++++...
T Consensus 316 ~~p~~~l~e~l~~~~~~~~~~~~~~ 340 (357)
T 1rkx_A 316 WHPRWNLNTTLEYIVGWHKNWLSGT 340 (357)
T ss_dssp CCCCCCHHHHHHHHHHHHHHHHTTC
T ss_pred CCcCCcHHHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999988654
|
| >1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A* 1i3n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-44 Score=357.59 Aligned_cols=318 Identities=28% Similarity=0.429 Sum_probs=259.9
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCC------CChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhcc
Q 012176 118 GMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSY------YDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDV 191 (469)
Q Consensus 118 ~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~------~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~ 191 (469)
+|+||||||+||||++|+++|+++|++|++++|.... .......... ....+++++.+|++|.+.++++++.
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~r~~~~~~~~~~~l~~--~~~~~~~~~~~D~~~~~~~~~~~~~ 79 (348)
T 1ek6_A 2 AEKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQE--LTGRSVEFEEMDILDQGALQRLFKK 79 (348)
T ss_dssp CSEEEEETTTSHHHHHHHHHHHHTTCCEEEEECSSSSCBCSSSSBHHHHHHHH--HHTCCCEEEECCTTCHHHHHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEecCCcccccccccHHHHHHHHh--ccCCceEEEECCCCCHHHHHHHHHh
Confidence 4799999999999999999999999999999986543 2222211111 1234789999999999999999985
Q ss_pred CCccEEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcCccccCCCCCCCCCCCCCCCCC-CChH
Q 012176 192 VPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQP-ASLY 270 (469)
Q Consensus 192 ~~~d~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p-~~~Y 270 (469)
.++|+|||+||.........+++.++++|+.++.+++++|++.+++ +|||+||.++||.....+++|+++. .| .+.|
T Consensus 80 ~~~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~iv~~SS~~~~g~~~~~~~~E~~~~-~p~~~~Y 157 (348)
T 1ek6_A 80 YSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKAHGVK-NLVFSSSATVYGNPQYLPLDEAHPT-GGCTNPY 157 (348)
T ss_dssp CCEEEEEECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCC-EEEEEEEGGGGCSCSSSSBCTTSCC-CCCSSHH
T ss_pred cCCCEEEECCCCcCccchhhchHHHHHHHHHHHHHHHHHHHHhCCC-EEEEECcHHHhCCCCCCCcCCCCCC-CCCCCch
Confidence 5569999999986655556788899999999999999999998876 9999999999998777789998876 45 7899
Q ss_pred HHHHHHHHHHHHHHHHHhC--CcEEEEeecceecCCC------C----CCChHHHHHHHHH-cCCceEEEee---CCCCc
Q 012176 271 AATKKAGEEIAHTYNHIYG--LALTGLRFFTVYGPWG------R----PDMAYFFFTKDIL-QGKTIDVYKT---QDDRE 334 (469)
Q Consensus 271 ~~sK~~~E~~~~~~~~~~g--i~~~ilRp~~v~Gp~~------~----~~~~~~~~~~~~~-~g~~~~~~~~---~~~~~ 334 (469)
+.+|.++|.+++.++.+ + ++++++||++||||+. . ...++..+...+. .+.++.+++. ..+++
T Consensus 158 ~~sK~~~e~~~~~~~~~-~~~~~~~~lR~~~v~G~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~ 236 (348)
T 1ek6_A 158 GKSKFFIEEMIRDLCQA-DKTWNAVLLRYFNPTGAHASGCIGEDPQGIPNNLMPYVSQVAIGRREALNVFGNDYDTEDGT 236 (348)
T ss_dssp HHHHHHHHHHHHHHHHH-CTTCEEEEEEECEEECCCTTSSCCCCCSSSCCSHHHHHHHHHHTSSSCEEEECSCSSSSSSS
T ss_pred HHHHHHHHHHHHHHHhc-CCCcceEEEeeccccCCCcccccCcCcccchhhHHHHHHHHHHhcCCCeEEeCCcccCCCCc
Confidence 99999999999999877 5 9999999999999942 1 2345666666666 6777777731 01578
Q ss_pred ceEecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCCcccHHHHHHHHHHHhCCCccceeecCCCCCCCCcccCChH
Q 012176 335 VARDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRNGDVPYTHANVS 414 (469)
Q Consensus 335 ~~~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~~vt~~el~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~d~~ 414 (469)
+.++|+|++|+|++++.+++++.. ...+++||+++++++|+.|+++.+.+.+|.+.+....+. ..++.....+|++
T Consensus 237 ~~~~~i~v~Dva~a~~~~~~~~~~---~~g~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~-~~~~~~~~~~d~~ 312 (348)
T 1ek6_A 237 GVRDYIHVVDLAKGHIAALRKLKE---QCGCRIYNLGTGTGYSVLQMVQAMEKASGKKIPYKVVAR-REGDVAACYANPS 312 (348)
T ss_dssp CEECEEEHHHHHHHHHHHHHHHTT---TCCEEEEEECCSCCEEHHHHHHHHHHHHCSCCCEEEECC-CTTCCSEECBCCH
T ss_pred eEEeeEEHHHHHHHHHHHHhcccc---cCCceEEEeCCCCCccHHHHHHHHHHHhCCCCceeeCCC-CCccchhhccCHH
Confidence 899999999999999999876421 112389999999999999999999999998876655543 3455667789999
Q ss_pred HHHHhcCCCccCcHHHHHHHHHHHHHHHcC
Q 012176 415 LAYKDFGYKPTTDLAAGLRKFVKWYVSYYG 444 (469)
Q Consensus 415 ka~~~LG~~p~~~l~~~l~~~v~~~~~~~~ 444 (469)
|++++|||+|+++++++|+++++||+++..
T Consensus 313 k~~~~lG~~p~~~l~~~l~~~~~w~~~~~~ 342 (348)
T 1ek6_A 313 LAQEELGWTAALGLDRMCEDLWRWQKQNPS 342 (348)
T ss_dssp HHHHTTCCCCCCCHHHHHHHHHHHHHHCTT
T ss_pred HHHHhcCCCCCCCHHHHHHHHHHHHHhccc
Confidence 999999999999999999999999987644
|
| >3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-45 Score=368.37 Aligned_cols=310 Identities=28% Similarity=0.399 Sum_probs=254.6
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHH--CCCcEEEEeCCCCCCChhHHH----HHHHhhccCCeEEEEecCCCHHHHHHh-
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKK--RGDGVLGLDNFNSYYDPSLKR----ARQKLLQKHQVFIVEGDLNDAPLLTKL- 188 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~--~G~~V~~~~r~~~~~~~~~~~----~~~~~~~~~~v~~v~~Dl~d~~~l~~~- 188 (469)
.++|+||||||+||||++|+++|++ .|++|++++|........... .........++.++.+|++|++.++++
T Consensus 8 ~~~~~vlVTGatG~IG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~ 87 (362)
T 3sxp_A 8 LENQTILITGGAGFVGSNLAFHFQENHPKAKVVVLDKFRSNTLFSNNRPSSLGHFKNLIGFKGEVIAADINNPLDLRRLE 87 (362)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHHCTTSEEEEEECCCCC-------CCCCCCGGGGTTCCSEEEECCTTCHHHHHHHT
T ss_pred cCCCEEEEECCCCHHHHHHHHHHHhhCCCCeEEEEECCCccccccccchhhhhhhhhccccCceEEECCCCCHHHHHHhh
Confidence 5789999999999999999999999 999999999965411000000 001112234789999999999999998
Q ss_pred hccCCccEEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcCccccCCCCCCCCCCCCCCCCCCC
Q 012176 189 FDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPAS 268 (469)
Q Consensus 189 ~~~~~~d~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~ 268 (469)
..+ +|+||||||... ....+++..+++|+.++.+++++|++.++ +|||+||.++||.... +++|+++. .|.+
T Consensus 88 ~~~--~D~vih~A~~~~--~~~~~~~~~~~~Nv~gt~~ll~aa~~~~~--~~V~~SS~~vyg~~~~-~~~E~~~~-~p~~ 159 (362)
T 3sxp_A 88 KLH--FDYLFHQAAVSD--TTMLNQELVMKTNYQAFLNLLEIARSKKA--KVIYASSAGVYGNTKA-PNVVGKNE-SPEN 159 (362)
T ss_dssp TSC--CSEEEECCCCCG--GGCCCHHHHHHHHTHHHHHHHHHHHHTTC--EEEEEEEGGGGCSCCS-SBCTTSCC-CCSS
T ss_pred ccC--CCEEEECCccCC--ccccCHHHHHHHHHHHHHHHHHHHHHcCC--cEEEeCcHHHhCCCCC-CCCCCCCC-CCCC
Confidence 554 499999999643 35678899999999999999999999886 5999999999998776 89999877 7889
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCcEEEEeecceecCCCCCC----ChHHHHHHHHHcCCceEEEeeCCCCcceEecccHHH
Q 012176 269 LYAATKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPD----MAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDD 344 (469)
Q Consensus 269 ~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~Gp~~~~~----~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~D 344 (469)
.|+.+|.++|.+++.++.+ +++++|||++||||+.... ..+..++..+..+.++.++ +++++.++|+|++|
T Consensus 160 ~Y~~sK~~~E~~~~~~~~~--~~~~~lR~~~v~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~g~~~~~~i~v~D 234 (362)
T 3sxp_A 160 VYGFSKLCMDEFVLSHSND--NVQVGLRYFNVYGPREFYKEKTASMVLQLALGAMAFKEVKLF---EFGEQLRDFVYIED 234 (362)
T ss_dssp HHHHHHHHHHHHHHHTTTT--SCEEEEEECSEESTTCGGGGGGSCHHHHHHHHHHTTSEEECS---GGGCCEEECEEHHH
T ss_pred hhHHHHHHHHHHHHHHhcc--CCEEEEEeCceeCcCCCCCCcchhHHHHHHHHHHhCCCeEEE---CCCCeEEccEEHHH
Confidence 9999999999999998865 8999999999999987654 5678889999999988877 56789999999999
Q ss_pred HHHHHHHHhccCCCCCCCCCceEEEeCCCCcccHHHHHHHHHHHhCCCccceeecCCCCCCCCcccCChHHHHHhcCCCc
Q 012176 345 VVKGCVGATGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRNGDVPYTHANVSLAYKDFGYKP 424 (469)
Q Consensus 345 va~~~~~~~~~~~~~~~~~~~~iyni~~~~~vt~~el~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~d~~ka~~~LG~~p 424 (469)
+|++++.+++++. . ++||+++++++|+.|+++.+.+.+| +..+...|.+...+.....+|++|++++|||+|
T Consensus 235 va~ai~~~~~~~~------~-g~~~i~~~~~~s~~e~~~~i~~~~g-~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p 306 (362)
T 3sxp_A 235 VIQANVKAMKAQK------S-GVYNVGYSQARSYNEIVSILKEHLG-DFKVTYIKNPYAFFQKHTQAHIEPTILDLDYTP 306 (362)
T ss_dssp HHHHHHHHTTCSS------C-EEEEESCSCEEEHHHHHHHHHHHHC-CCEEECCC-------CCCCBCCHHHHHHHCCCC
T ss_pred HHHHHHHHHhcCC------C-CEEEeCCCCCccHHHHHHHHHHHcC-CCceEECCCCCcCcccceecCHHHHHHHhCCCC
Confidence 9999999998652 2 4999999999999999999999999 766665554434556678899999999999999
Q ss_pred cCcHHHHHHHHHHHHHHHcCCC
Q 012176 425 TTDLAAGLRKFVKWYVSYYGIQ 446 (469)
Q Consensus 425 ~~~l~~~l~~~v~~~~~~~~~~ 446 (469)
.++++++|+++++||++.++.+
T Consensus 307 ~~~l~e~l~~~~~~~~~~~~~~ 328 (362)
T 3sxp_A 307 LYDLESGIKDYLPHIHAIFKGQ 328 (362)
T ss_dssp CCCHHHHHHHHHHHHTCC----
T ss_pred CCCHHHHHHHHHHHHHHHhhcc
Confidence 9999999999999998877654
|
| >1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX NAD; 1.5A {Streptococcus suis} SCOP: c.2.1.2 PDB: 1ker_A* 1ket_A* 1kep_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-44 Score=358.80 Aligned_cols=308 Identities=21% Similarity=0.318 Sum_probs=259.7
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHC--CCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCcc
Q 012176 118 GMTVLVTGAAGFVGSHCSLALKKR--GDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFT 195 (469)
Q Consensus 118 ~~~VlVtGatG~IG~~l~~~L~~~--G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~d 195 (469)
+|+||||||+||||++|+++|+++ |++|++++|......... ...+...+++++.+|++|.+.+.++++++ |
T Consensus 4 m~~vlVTGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~~----~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~--d 77 (348)
T 1oc2_A 4 FKNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAGNKAN----LEAILGDRVELVVGDIADAELVDKLAAKA--D 77 (348)
T ss_dssp CSEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCTTCCGGG----TGGGCSSSEEEEECCTTCHHHHHHHHTTC--S
T ss_pred CcEEEEeCCccHHHHHHHHHHHHhCCCCEEEEEeCCCCCCChhH----HhhhccCCeEEEECCCCCHHHHHHHhhcC--C
Confidence 479999999999999999999999 899999999653211110 01122358999999999999999999988 9
Q ss_pred EEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcCccccCCCCC------------CCCCCCCCC
Q 012176 196 HVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQ------------VPFSESHRT 263 (469)
Q Consensus 196 ~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS~~vyg~~~~------------~~~~E~~~~ 263 (469)
+|||+||.........+++..+++|+.++.+++++|++.+. +|||+||.++||.... .+++|+++.
T Consensus 78 ~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~--~~v~~SS~~vyg~~~~~~~~~~~~~~~~~~~~E~~~~ 155 (348)
T 1oc2_A 78 AIVHYAAESHNDNSLNDPSPFIHTNFIGTYTLLEAARKYDI--RFHHVSTDEVYGDLPLREDLPGHGEGPGEKFTAETNY 155 (348)
T ss_dssp EEEECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHHTC--EEEEEEEGGGGCCBCCGGGSTTTTCSTTSSBCTTSCC
T ss_pred EEEECCcccCccchhhCHHHHHHHHHHHHHHHHHHHHHhCC--eEEEecccceeCCCcccccccccccccCCCcCCCCCC
Confidence 99999998766556678889999999999999999999875 8999999999986532 578888776
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHhCCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceEecccHH
Q 012176 264 DQPASLYAATKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYID 343 (469)
Q Consensus 264 ~~p~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~ 343 (469)
.|.+.|+.+|.++|.+++.++.++|+++++|||+.||||+......+..++..+..+.++.++ +++++.++|+|++
T Consensus 156 -~~~~~Y~~sK~~~e~~~~~~~~~~gi~~~ilrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~i~v~ 231 (348)
T 1oc2_A 156 -NPSSPYSSTKAASDLIVKAWVRSFGVKATISNCSNNYGPYQHIEKFIPRQITNILAGIKPKLY---GEGKNVRDWIHTN 231 (348)
T ss_dssp -CCCSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEESTTCCTTSHHHHHHHHHHHTCCCEEE---TTSCCEEECEEHH
T ss_pred -CCCCccHHHHHHHHHHHHHHHHHhCCCEEEEeeceeeCCCCCccchHHHHHHHHHcCCCceEe---cCCCceEeeEEHH
Confidence 688999999999999999999888999999999999999876666777888888899988887 6788999999999
Q ss_pred HHHHHHHHHhccCCCCCCCCCceEEEeCCCCcccHHHHHHHHHHHhCCCccceeecCCCCCCCCcccCChHHHHHhcCCC
Q 012176 344 DVVKGCVGATGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRNGDVPYTHANVSLAYKDFGYK 423 (469)
Q Consensus 344 Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~~vt~~el~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~d~~ka~~~LG~~ 423 (469)
|+|++++.+++++ ..+++||+++++++|+.|+++.+.+.+|.+.........+.++.....+|++|++++|||+
T Consensus 232 Dva~~~~~~~~~~------~~g~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~ 305 (348)
T 1oc2_A 232 DHSTGVWAILTKG------RMGETYLIGADGEKNNKEVLELILEKMGQPKDAYDHVTDRAGHDLRYAIDASKLRDELGWT 305 (348)
T ss_dssp HHHHHHHHHHHHC------CTTCEEEECCSCEEEHHHHHHHHHHHTTCCTTCSEEECCCTTCCCBCCBCCHHHHHHHCCC
T ss_pred HHHHHHHHHhhCC------CCCCeEEeCCCCCCCHHHHHHHHHHHhCCCccccccCCCCCCcccccccCHHHHHHHcCCC
Confidence 9999999998764 2358999999999999999999999999875322222223344455678999999999999
Q ss_pred ccCc-HHHHHHHHHHHHHHHc
Q 012176 424 PTTD-LAAGLRKFVKWYVSYY 443 (469)
Q Consensus 424 p~~~-l~~~l~~~v~~~~~~~ 443 (469)
|+++ ++++|+++++||++..
T Consensus 306 p~~~~~~~~l~~~~~~~~~~~ 326 (348)
T 1oc2_A 306 PQFTDFSEGLEETIQWYTDNQ 326 (348)
T ss_dssp CSCCCHHHHHHHHHHHHHHTH
T ss_pred CCCCcHHHHHHHHHHHHHHhh
Confidence 9998 9999999999998753
|
| >1i24_A Sulfolipid biosynthesis protein SQD1; SDR, short-chain dehydrogenase/reductase, rossmann fold, BIO protein; HET: NAD UPG; 1.20A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1i2c_A* 1i2b_A* 1qrr_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-44 Score=366.83 Aligned_cols=333 Identities=22% Similarity=0.257 Sum_probs=260.4
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCCh------------h-HHHHHH-HhhccCCeEEEEecCCC
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDP------------S-LKRARQ-KLLQKHQVFIVEGDLND 181 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~------------~-~~~~~~-~~~~~~~v~~v~~Dl~d 181 (469)
..+++||||||+||||++|+++|+++|++|++++|....... . ...... ......+++++.+|++|
T Consensus 9 ~~~~~vlVTG~tGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~Dl~d 88 (404)
T 1i24_A 9 HHGSRVMVIGGDGYCGWATALHLSKKNYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKALTGKSIELYVGDICD 88 (404)
T ss_dssp ---CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTCCCSSCCCCHHHHHHHHHHHHCCCCEEEESCTTS
T ss_pred cCCCeEEEeCCCcHHHHHHHHHHHhCCCeEEEEEecCccccccccccccccccchhhhhhhhHhhccCCceEEEECCCCC
Confidence 567899999999999999999999999999999984221000 0 000000 01123579999999999
Q ss_pred HHHHHHhhccCCccEEEEcccccChhhhccChH---HHHHHHHHHHHHHHHHHHhcCCCCeEEEEcCccccCCCCCCCCC
Q 012176 182 APLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQ---SYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFS 258 (469)
Q Consensus 182 ~~~l~~~~~~~~~d~Vih~Aa~~~~~~~~~~~~---~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS~~vyg~~~~~~~~ 258 (469)
.+.+.+++++.++|+||||||.........+++ .++++|+.|+.+++++|++.+..++|||+||.++||... .+++
T Consensus 89 ~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~~~~~~~V~~SS~~vyg~~~-~~~~ 167 (404)
T 1i24_A 89 FEFLAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVYTQHNNVIGTLNVLFAIKEFGEECHLVKLGTMGEYGTPN-IDIE 167 (404)
T ss_dssp HHHHHHHHHHHCCSEEEECCSCCCHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEECCGGGGCCCS-SCBC
T ss_pred HHHHHHHHhccCCCEEEECCCCCCccchhhCccchhhhHHHHHHHHHHHHHHHHHhCCCcEEEEeCcHHHhCCCC-CCCC
Confidence 999999999855699999999866554445554 478999999999999999988634999999999998665 3677
Q ss_pred CCC-------------CCCCCCChHHHHHHHHHHHHHHHHHHhCCcEEEEeecceecCCCCC-----------------C
Q 012176 259 ESH-------------RTDQPASLYAATKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRP-----------------D 308 (469)
Q Consensus 259 E~~-------------~~~~p~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~Gp~~~~-----------------~ 308 (469)
|++ .+..|.+.|+.+|.++|.+++.++.++|+++++|||+.||||+..+ .
T Consensus 168 E~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~gi~~~ivrp~~v~Gp~~~~~~~~~~~~~~~~~~~~~~ 247 (404)
T 1i24_A 168 EGYITITHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVKTDETEMHEELRNRLDYDAVFG 247 (404)
T ss_dssp SSEEEEEETTEEEEEECCCCCCSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECSCCTTGGGSGGGCCCCCCSTTTC
T ss_pred ccccccccccccccccCCCCCCChhHHHHHHHHHHHHHHHHhcCCeEEEEecceeeCCCCCccccccccccccccccchh
Confidence 651 1236788999999999999999998889999999999999997643 3
Q ss_pred ChHHHHHHHHHcCCceEEEeeCCCCcceEecccHHHHHHHHHHHhccCCCCCCCCCc--eEEEeCCCCcccHHHHHHHHH
Q 012176 309 MAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGATGSGGKKRGPAQL--RVYNLGNTSPVPVGRLVSILE 386 (469)
Q Consensus 309 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~~~~~~~~~~~~~~~~~~~--~iyni~~~~~vt~~el~~~i~ 386 (469)
..+..++..+..|+++.++ +++++.++|+|++|+|++++.+++++. ..+ ++||+++ +++|+.|+++.+.
T Consensus 248 ~~~~~~~~~~~~g~~~~~~---g~g~~~~~~i~v~Dva~a~~~~l~~~~-----~~g~~~~yni~~-~~~s~~e~~~~i~ 318 (404)
T 1i24_A 248 TALNRFCVQAAVGHPLTVY---GKGGQTRGYLDIRDTVQCVEIAIANPA-----KAGEFRVFNQFT-EQFSVNELASLVT 318 (404)
T ss_dssp CHHHHHHHHHHHTCCEEEE---TTSCCEEEEEEHHHHHHHHHHHHHSCC-----CTTCEEEEEECS-EEEEHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCeeEEe---CCCCceECcEEHHHHHHHHHHHHhCcc-----cCCCceEEEECC-CCCcHHHHHHHHH
Confidence 4677888999999988887 678899999999999999999998752 233 7999998 8899999999999
Q ss_pred HH---hCCCccceeecCCCCC-CCCcccCChHHHHHhcCCCccCcHHHHHHHHHHHHHHHcCCCCcccccCCccccc
Q 012176 387 NL---LNTKAKKHVIRMPRNG-DVPYTHANVSLAYKDFGYKPTTDLAAGLRKFVKWYVSYYGIQPRVKKENGFSTTT 459 (469)
Q Consensus 387 ~~---~g~~~~~~~~~~~~~~-~~~~~~~d~~ka~~~LG~~p~~~l~~~l~~~v~~~~~~~~~~~~~~~~~~~~~~~ 459 (469)
+. +|.+......|.+... +.....+|++|++ +|||+|+++++++++++++|+..+.+............|+.
T Consensus 319 ~~~~~~g~~~~~~~~p~~~~~~~~~~~~~d~~k~~-~LG~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (404)
T 1i24_A 319 KAGSKLGLDVKKMTVPNPRVEAEEHYYNAKHTKLM-ELGLEPHYLSDSLLDSLLNFAVQFKDRVDTKQIMPSVSWKK 394 (404)
T ss_dssp HHHHTTTCCCCEEEECCSSCSCSSCCCCBCCCHHH-HTTCCCCCCCHHHHHHHHHHHHHTGGGCCGGGSSCCCCTTT
T ss_pred HHHHhhCCCccccccCcccCccccceEecCHHHHH-HcCCCcCcCHHHHHHHHHHHHHhhhhccChhhccCCccccc
Confidence 98 7887665555543321 3345668999997 79999999999999999999988766543333444444444
|
| >2p5y_A UDP-glucose 4-epimerase; TTHA0591, structural genomics, PSI; HET: NAD; 1.92A {Thermus thermophilus HB8} PDB: 2p5u_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-44 Score=356.87 Aligned_cols=302 Identities=30% Similarity=0.429 Sum_probs=255.5
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCccEEE
Q 012176 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTHVL 198 (469)
Q Consensus 119 ~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~d~Vi 198 (469)
|+||||||+||||++++++|+++|++|++++|........ + ..+++++.+|++|++.++++++..++|+||
T Consensus 1 m~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~--------~-~~~~~~~~~Dl~~~~~~~~~~~~~~~d~vi 71 (311)
T 2p5y_A 1 MRVLVTGGAGFIGSHIVEDLLARGLEVAVLDNLATGKREN--------V-PKGVPFFRVDLRDKEGVERAFREFRPTHVS 71 (311)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTTCEEEEECCCSSCCGGG--------S-CTTCCEECCCTTCHHHHHHHHHHHCCSEEE
T ss_pred CEEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCCcCchhh--------c-ccCeEEEECCCCCHHHHHHHHHhcCCCEEE
Confidence 6899999999999999999999999999999854321110 1 136788999999999999999854559999
Q ss_pred EcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcCc-cccCC-CCCCCCCCCCCCCCCCChHHHHHHH
Q 012176 199 HLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSS-SVYGL-NTQVPFSESHRTDQPASLYAATKKA 276 (469)
Q Consensus 199 h~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS~-~vyg~-~~~~~~~E~~~~~~p~~~Y~~sK~~ 276 (469)
|+|+.........++...+++|+.++.+++++|++.+++ +||++||. ++||. ....+++|+++. .|.+.|+.+|.+
T Consensus 72 ~~a~~~~~~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~-~iv~~SS~~~~~g~~~~~~~~~E~~~~-~~~~~Y~~sK~~ 149 (311)
T 2p5y_A 72 HQAAQASVKVSVEDPVLDFEVNLLGGLNLLEACRQYGVE-KLVFASTGGAIYGEVPEGERAEETWPP-RPKSPYAASKAA 149 (311)
T ss_dssp ECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCS-EEEEEEEHHHHHCCCCTTCCBCTTSCC-CCCSHHHHHHHH
T ss_pred ECccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHhCCC-EEEEeCCChhhcCCCCCCCCcCCCCCC-CCCChHHHHHHH
Confidence 999987665566788899999999999999999998876 99999998 99986 455678888876 678899999999
Q ss_pred HHHHHHHHHHHhCCcEEEEeecceecCCCCCC---ChHHHHHHHHHcCCceEEEe--eCCCCcceEecccHHHHHHHHHH
Q 012176 277 GEEIAHTYNHIYGLALTGLRFFTVYGPWGRPD---MAYFFFTKDILQGKTIDVYK--TQDDREVARDFTYIDDVVKGCVG 351 (469)
Q Consensus 277 ~E~~~~~~~~~~gi~~~ilRp~~v~Gp~~~~~---~~~~~~~~~~~~g~~~~~~~--~~~~~~~~~~~v~v~Dva~~~~~ 351 (469)
+|.+++.++.++|++++++||++||||+.... ..+..+++.+..+.++.++. .++++++.++|+|++|+|++++.
T Consensus 150 ~e~~~~~~~~~~~~~~~~lrp~~v~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~Dva~a~~~ 229 (311)
T 2p5y_A 150 FEHYLSVYGQSYGLKWVSLRYGNVYGPRQDPHGEAGVVAIFAERVLKGLPVTLYARKTPGDEGCVRDYVYVGDVAEAHAL 229 (311)
T ss_dssp HHHHHHHHHHHHCCCEEEEEECEEECTTCCSSSTTHHHHHHHHHHHHTCCEEEECSSSTTSCCCEECEEEHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCEEEEeeccccCcCCCCCCcCcHHHHHHHHHHcCCCcEEEecccCCCCCeEEeeEEHHHHHHHHHH
Confidence 99999999988899999999999999986543 34667788888888876651 11346789999999999999999
Q ss_pred HhccCCCCCCCCCceEEEeCCCCcccHHHHHHHHHHHhCCCccceeecCCCCCCCCcccCChHHHHHhcCCCccCcHHHH
Q 012176 352 ATGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRNGDVPYTHANVSLAYKDFGYKPTTDLAAG 431 (469)
Q Consensus 352 ~~~~~~~~~~~~~~~iyni~~~~~vt~~el~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~~l~~~ 431 (469)
+++++ +++||+++++++|+.|+++.+.+.+|.+.+....|. ..++.....+|++|+++ |||+|.++++++
T Consensus 230 ~~~~~--------~~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~-~~~~~~~~~~d~~k~~~-lg~~p~~~~~~~ 299 (311)
T 2p5y_A 230 ALFSL--------EGIYNVGTGEGHTTREVLMAVAEAAGKAPEVQPAPP-RPGDLERSVLSPLKLMA-HGWRPKVGFQEG 299 (311)
T ss_dssp HHHHC--------CEEEEESCSCCEEHHHHHHHHHHHHTCCCCEEEECC-CTTCCSBCCBCCHHHHT-TTCCCSSCHHHH
T ss_pred HHhCC--------CCEEEeCCCCCccHHHHHHHHHHHhCCCCCceeCCC-CccchhhccCCHHHHHH-CCCCCCCCHHHH
Confidence 98764 399999999999999999999999998876665553 34566678899999999 999999999999
Q ss_pred HHHHHHHHHH
Q 012176 432 LRKFVKWYVS 441 (469)
Q Consensus 432 l~~~v~~~~~ 441 (469)
|+++++||++
T Consensus 300 l~~~~~~~~~ 309 (311)
T 2p5y_A 300 IRLTVDHFRG 309 (311)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHh
Confidence 9999999964
|
| >2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.2e-45 Score=368.05 Aligned_cols=307 Identities=24% Similarity=0.331 Sum_probs=252.0
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCC-CcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCc
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRG-DGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPF 194 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~ 194 (469)
.++|+||||||+||||++|+++|+++| ++|++++|........+. ...+++++.+|++|++.++++++++
T Consensus 30 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~l~-------~~~~v~~~~~Dl~d~~~l~~~~~~~-- 100 (377)
T 2q1s_A 30 LANTNVMVVGGAGFVGSNLVKRLLELGVNQVHVVDNLLSAEKINVP-------DHPAVRFSETSITDDALLASLQDEY-- 100 (377)
T ss_dssp GTTCEEEEETTTSHHHHHHHHHHHHTTCSEEEEECCCTTCCGGGSC-------CCTTEEEECSCTTCHHHHHHCCSCC--
T ss_pred hCCCEEEEECCccHHHHHHHHHHHHcCCceEEEEECCCCCchhhcc-------CCCceEEEECCCCCHHHHHHHhhCC--
Confidence 457899999999999999999999999 999999996543221111 2458999999999999999999866
Q ss_pred cEEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhc-CCCCeEEEEcCccccCCCCCCCCC--CCCC--CC-CCCC
Q 012176 195 THVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSV-NPQPSIVWASSSSVYGLNTQVPFS--ESHR--TD-QPAS 268 (469)
Q Consensus 195 d~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~-~~~~~~V~~SS~~vyg~~~~~~~~--E~~~--~~-~p~~ 268 (469)
|+|||+||.........++...+++|+.++.+++++|++. +++ +|||+||.++||.....+++ |++. +. .|.+
T Consensus 101 d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~-~~V~~SS~~vyg~~~~~~~~~~E~~~~~~~~~~~~ 179 (377)
T 2q1s_A 101 DYVFHLATYHGNQSSIHDPLADHENNTLTTLKLYERLKHFKRLK-KVVYSAAGCSIAEKTFDDAKATEETDIVSLHNNDS 179 (377)
T ss_dssp SEEEECCCCSCHHHHHHCHHHHHHHHTHHHHHHHHHHTTCSSCC-EEEEEEEC--------------CCCCCCCSSCCCS
T ss_pred CEEEECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCC-eEEEeCCHHHcCCCCCCCcCcccccccccccCCCC
Confidence 9999999987666566788899999999999999999998 776 99999999999977666777 8762 22 5678
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCcEEEEeecceecCCC---------CC----CChHHHHHHHHHcCCceEEEeeCCCCcc
Q 012176 269 LYAATKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWG---------RP----DMAYFFFTKDILQGKTIDVYKTQDDREV 335 (469)
Q Consensus 269 ~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~Gp~~---------~~----~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 335 (469)
.|+.+|.++|.+++.++.++|+++++|||+.||||+. .+ ...+..++..+..+.++.++ +++++
T Consensus 180 ~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~G~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~---g~g~~ 256 (377)
T 2q1s_A 180 PYSMSKIFGEFYSVYYHKQHQLPTVRARFQNVYGPGEILGAGRWRGTPATVWRNVTPTFIYKALKGMPLPLE---NGGVA 256 (377)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEECTTCCTTCSSCCSSGGGTSCSHHHHHHHHHHTTCCCCCS---GGGCC
T ss_pred chHHHHHHHHHHHHHHHHHhCCCEEEEeeccEECCCCcccccccccCcccccccHHHHHHHHHHcCCCeEEe---CCCCe
Confidence 9999999999999999988899999999999999977 43 45677888889999888776 56789
Q ss_pred eEecccHHHHHHH-HHHHhccCCCCCCCCCceEEEeCCCCcccHHHHHHHHHHHhCCCccceeecCCCCCCCC-cccCCh
Q 012176 336 ARDFTYIDDVVKG-CVGATGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRNGDVP-YTHANV 413 (469)
Q Consensus 336 ~~~~v~v~Dva~~-~~~~~~~~~~~~~~~~~~iyni~~~~~vt~~el~~~i~~~~g~~~~~~~~~~~~~~~~~-~~~~d~ 413 (469)
.++|+|++|+|++ ++.+++++ . .+ +||+++++++|+.|+++.+.+.+|.+..+...|. +.++.. ...+|+
T Consensus 257 ~~~~i~v~Dva~a~i~~~~~~~-----~-~g-~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~p~-~~~~~~~~~~~d~ 328 (377)
T 2q1s_A 257 TRDFIFVEDVANGLIACAADGT-----P-GG-VYNIASGKETSIADLATKINEITGNNTELDRLPK-RPWDNSGKRFGSP 328 (377)
T ss_dssp EECCEEHHHHHHHHHHHHHHCC-----T-TE-EEECCCCCCEEHHHHHHHHHHHHTCCSCCCCCCC-CGGGCC-CCCCCC
T ss_pred EEeeEEHHHHHHHHHHHHHhcC-----C-CC-eEEecCCCceeHHHHHHHHHHHhCCCCCceeCCC-CccccccccccCH
Confidence 9999999999999 99999875 2 34 9999999999999999999999998876555442 233445 678999
Q ss_pred HHHHHhcCCCccCcHHHHHHHHHHHHHHHc
Q 012176 414 SLAYKDFGYKPTTDLAAGLRKFVKWYVSYY 443 (469)
Q Consensus 414 ~ka~~~LG~~p~~~l~~~l~~~v~~~~~~~ 443 (469)
+|++++|||+|.++++++|+++++||++..
T Consensus 329 ~k~~~~lG~~p~~~l~e~l~~~~~~~~~~~ 358 (377)
T 2q1s_A 329 EKARRELGFSADVSIDDGLRKTIEWTKANL 358 (377)
T ss_dssp HHHHHHHCCCCCCCHHHHHHHHHHHHHHTH
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999998764
|
| >1gy8_A UDP-galactose 4-epimerase; oxidoreductase; HET: NAD UDP; 2.0A {Trypanosoma brucei} SCOP: c.2.1.2 PDB: 2cnb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-44 Score=364.57 Aligned_cols=325 Identities=22% Similarity=0.319 Sum_probs=257.4
Q ss_pred CCEEEEEcCCChhHHHHHHHHH-HCCCcEEEEeCCCCCC--------ChhHHHHHHHhhc---cCC---eEEEEecCCCH
Q 012176 118 GMTVLVTGAAGFVGSHCSLALK-KRGDGVLGLDNFNSYY--------DPSLKRARQKLLQ---KHQ---VFIVEGDLNDA 182 (469)
Q Consensus 118 ~~~VlVtGatG~IG~~l~~~L~-~~G~~V~~~~r~~~~~--------~~~~~~~~~~~~~---~~~---v~~v~~Dl~d~ 182 (469)
+|+||||||+||||++|+++|+ ++|++|++++|..... ...+......... ..+ ++++.+|++|+
T Consensus 2 ~m~vlVTGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~ 81 (397)
T 1gy8_A 2 HMRVLVCGGAGYIGSHFVRALLRDTNHSVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPKPPWADRYAALEVGDVRNE 81 (397)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHCCCEEEEEECCTTTTTCCTTSCCHHHHHHHHHHSCSSCCTTTTCCCEEEESCTTCH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHhCCCEEEEEecCCcccccccccchHHHHHHHHHHhhccccccCCceEEEEECCCCCH
Confidence 4799999999999999999999 9999999999965432 1111111111111 124 89999999999
Q ss_pred HHHHHhhccCC-ccEEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcCccccCCCC-------C
Q 012176 183 PLLTKLFDVVP-FTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNT-------Q 254 (469)
Q Consensus 183 ~~l~~~~~~~~-~d~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS~~vyg~~~-------~ 254 (469)
+.+.++++..+ +|+||||||.........+++.++++|+.++.+++++|++.+++ +|||+||.++|+... .
T Consensus 82 ~~~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~ll~a~~~~~~~-~iv~~SS~~v~g~~~~~~~~~~~ 160 (397)
T 1gy8_A 82 DFLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKYYDNNVVGILRLLQAMLLHKCD-KIIFSSSAAIFGNPTMGSVSTNA 160 (397)
T ss_dssp HHHHHHHHHSCCCCEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCC-EEEEEEEGGGTBSCCC-----CC
T ss_pred HHHHHHHHhcCCCCEEEECCCccCcCcchhhHHHHHHHHhHHHHHHHHHHHHhCCC-EEEEECCHHHhCCCCcccccccc
Confidence 99999998544 69999999987655556788899999999999999999999876 999999999998765 5
Q ss_pred CCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHhCCcEEEEeecceecCCCC---------CCChHHHHH----HHHHcC
Q 012176 255 VPFSESHRTDQPASLYAATKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGR---------PDMAYFFFT----KDILQG 321 (469)
Q Consensus 255 ~~~~E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~Gp~~~---------~~~~~~~~~----~~~~~g 321 (469)
.+++|+++. .|.+.|+.+|.++|.+++.++.++|+++++|||++||||+.. ...++..++ ..+..+
T Consensus 161 ~~~~E~~~~-~p~~~Y~~sK~~~e~~~~~~~~~~gi~~~ilRp~~v~G~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 239 (397)
T 1gy8_A 161 EPIDINAKK-SPESPYGESKLIAERMIRDCAEAYGIKGICLRYFNACGAHEDGDIGEHYQGSTHLIPIILGRVMSDIAPD 239 (397)
T ss_dssp CCBCTTSCC-BCSSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECCCTTSSCSCCSTTCCSHHHHHHHHHHHHHSCC
T ss_pred cCcCccCCC-CCCCchHHHHHHHHHHHHHHHHHHCCcEEEEeccceeCCCccccccccccchhHHHHHHHHHHHHHHHhc
Confidence 688998876 788999999999999999999988999999999999999632 234455444 244455
Q ss_pred C------------ceEEEee---CCCCcceEecccHHHHHHHHHHHhccCCCCCCCCCc---eEEEeCCCCcccHHHHHH
Q 012176 322 K------------TIDVYKT---QDDREVARDFTYIDDVVKGCVGATGSGGKKRGPAQL---RVYNLGNTSPVPVGRLVS 383 (469)
Q Consensus 322 ~------------~~~~~~~---~~~~~~~~~~v~v~Dva~~~~~~~~~~~~~~~~~~~---~iyni~~~~~vt~~el~~ 383 (469)
. ++.+++. ..++++.++|+|++|+|++++.+++++....+...+ ++||+++++++|+.|+++
T Consensus 240 ~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~v~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~ni~~~~~~s~~e~~~ 319 (397)
T 1gy8_A 240 QRLTIHEDASTDKRMPIFGTDYPTPDGTCVRDYVHVCDLASAHILALDYVEKLGPNDKSKYFSVFNLGTSRGYSVREVIE 319 (397)
T ss_dssp -----------CCCEEEECSCSSSTTSSCEECEEEHHHHHHHHHHHHHHHHTCCTTTGGGSEEEEEESCSCCEEHHHHHH
T ss_pred CccccccccccCCCceeecCcccCCCCCeeEeeEeHHHHHHHHHHHHhcccccccccccCCCcEEEeCCCCcccHHHHHH
Confidence 4 4666620 015789999999999999999998764210000023 899999999999999999
Q ss_pred HHHHHhCCCccceeecCCCCCCCCcccCChHHHHHhcCCCccC-cHHHHHHHHHHHHHHHcCC
Q 012176 384 ILENLLNTKAKKHVIRMPRNGDVPYTHANVSLAYKDFGYKPTT-DLAAGLRKFVKWYVSYYGI 445 (469)
Q Consensus 384 ~i~~~~g~~~~~~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~-~l~~~l~~~v~~~~~~~~~ 445 (469)
.+.+.+|.+.+....+. ..++.....+|++|++++|||+|++ +++++|+++++||+++.+.
T Consensus 320 ~i~~~~g~~~~~~~~~~-~~~~~~~~~~d~~k~~~~lG~~p~~~~l~e~l~~~~~~~~~~~~~ 381 (397)
T 1gy8_A 320 VARKTTGHPIPVRECGR-REGDPAYLVAASDKAREVLGWKPKYDTLEAIMETSWKFQRTHPNG 381 (397)
T ss_dssp HHHHHHCCCCCEEEECC-CTTCCSEECBCCHHHHHHTCCCCSCCSHHHHHHHHHHHHHTCTTT
T ss_pred HHHHHhCCCCCeeeCCC-CCCcccccccCHHHHHHHhCCCCCcCCHHHHHHHHHHHHHhcccc
Confidence 99999998876655443 3455667889999999999999999 9999999999999877543
|
| >1udb_A Epimerase, UDP-galactose-4-epimerase; isomerase; HET: NAD UFG; 1.65A {Escherichia coli} SCOP: c.2.1.2 PDB: 1lrj_A* 1nai_A* 1uda_A* 1nah_A* 1xel_A* 1kvq_A* 1kvs_A* 1udc_A* 2udp_A* 1a9z_A* 1kvt_A* 1kvr_A* 1lrk_A* 1lrl_A* 1kvu_A* 1a9y_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-43 Score=352.57 Aligned_cols=319 Identities=25% Similarity=0.413 Sum_probs=254.8
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCccEEE
Q 012176 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTHVL 198 (469)
Q Consensus 119 ~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~d~Vi 198 (469)
|+||||||+||||++++++|+++|++|++++|.............. ....++.++.+|++|++.+++++++.++|+||
T Consensus 1 m~vlVTGatG~iG~~l~~~L~~~G~~V~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~Dl~~~~~~~~~~~~~~~D~vi 78 (338)
T 1udb_A 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIER--LGGKHPTFVEGDIRNEALMTEILHDHAIDTVI 78 (338)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCTTHHHHHHH--HHTSCCEEEECCTTCHHHHHHHHHHTTCSEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEecCCCcchhHHHHHHh--hcCCcceEEEccCCCHHHHHHHhhccCCCEEE
Confidence 5899999999999999999999999999998754432222221111 11246889999999999999999875679999
Q ss_pred EcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcCccccCCCCCCCCCCCCCCCCCCChHHHHHHHHH
Q 012176 199 HLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGE 278 (469)
Q Consensus 199 h~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y~~sK~~~E 278 (469)
||||.........++...+++|+.++.+++++|++.+++ +||++||.++||.....+++|+++...+.+.|+.+|.++|
T Consensus 79 h~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~iv~~SS~~~~g~~~~~~~~e~~~~~~~~~~Y~~sK~~~e 157 (338)
T 1udb_A 79 HFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVK-NFIFSSSATVYGDNPKIPYVESFPTGTPQSPYGKSKLMVE 157 (338)
T ss_dssp ECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTCC-EEEEEEEGGGGCSCCSSSBCTTSCCCCCSSHHHHHHHHHH
T ss_pred ECCccCccccchhcHHHHHHHHHHHHHHHHHHHHhcCCC-eEEEEccHHHhCCCCCCCcCcccCCCCCCChHHHHHHHHH
Confidence 999976554455677889999999999999999998876 9999999999997766788888776334789999999999
Q ss_pred HHHHHHHHHh-CCcEEEEeecceecCCC------C----CCChHHHHHHHHH-cCCceEEEee---CCCCcceEecccHH
Q 012176 279 EIAHTYNHIY-GLALTGLRFFTVYGPWG------R----PDMAYFFFTKDIL-QGKTIDVYKT---QDDREVARDFTYID 343 (469)
Q Consensus 279 ~~~~~~~~~~-gi~~~ilRp~~v~Gp~~------~----~~~~~~~~~~~~~-~g~~~~~~~~---~~~~~~~~~~v~v~ 343 (469)
.+++.++.++ +++++++||+++|||+. . ...++..+..... .+.++.+++. ..++++.++|+|++
T Consensus 158 ~~~~~~~~~~~~~~~~ilR~~~v~G~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~i~v~ 237 (338)
T 1udb_A 158 QILTDLQKAQPDWSIALLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIHVM 237 (338)
T ss_dssp HHHHHHHHHSTTCEEEEEEECEEECCCTTSSSCCCCCSSCCSHHHHHHHHHHTSSSCEEEECSCSSSSSSSCEECEEEHH
T ss_pred HHHHHHHHhcCCCceEEEeeceecCCCcccccccccccchhhHHHHHHHHHHhcCCCcEEecCcccCCCCceeeeeEEHH
Confidence 9999998876 89999999999999842 1 1234555555554 4556666531 02467899999999
Q ss_pred HHHHHHHHHhccCCCCCCCCCceEEEeCCCCcccHHHHHHHHHHHhCCCccceeecCCCCCCCCcccCChHHHHHhcCCC
Q 012176 344 DVVKGCVGATGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRNGDVPYTHANVSLAYKDFGYK 423 (469)
Q Consensus 344 Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~~vt~~el~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~d~~ka~~~LG~~ 423 (469)
|+|++++.++++... ...+++||+++++++|+.|+++.+.+.+|.+......+. ..++.....+|++|++++|||+
T Consensus 238 Dva~a~~~~l~~~~~---~~~~~~yni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~-~~~~~~~~~~d~~k~~~~lG~~ 313 (338)
T 1udb_A 238 DLADGHVVAMEKLAN---KPGVHIYNLGAGVGNSVLDVVNAFSKACGKPVNYHFAPR-REGDLPAYWADASKADRELNWR 313 (338)
T ss_dssp HHHHHHHHHHHHHTT---CCEEEEEEESCSCCEEHHHHHHHHHHHHTSCCCEEEECC-CTTCCSBCCBCCHHHHHHHCCC
T ss_pred HHHHHHHHHHhhhhc---cCCCcEEEecCCCceeHHHHHHHHHHHhCCCCcceeCCC-CCCchhhhhcCHHHHHHHcCCC
Confidence 999999999875311 112379999999999999999999999998766555443 3455667789999999999999
Q ss_pred ccCcHHHHHHHHHHHHHHHcC
Q 012176 424 PTTDLAAGLRKFVKWYVSYYG 444 (469)
Q Consensus 424 p~~~l~~~l~~~v~~~~~~~~ 444 (469)
|+++++++|+++++||+++.+
T Consensus 314 p~~~l~~~l~~~~~w~~~~~~ 334 (338)
T 1udb_A 314 VTRTLDEMAQDTWHWQSRHPQ 334 (338)
T ss_dssp CCCCHHHHHHHHHHHHHHCTT
T ss_pred cCCCHHHHHHHHHHHHHhccc
Confidence 999999999999999987654
|
| >2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N biosynthes methyltransferase, transferase; 2.3A {Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A 1z75_A 1z7b_A 1z74_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-44 Score=358.31 Aligned_cols=309 Identities=22% Similarity=0.342 Sum_probs=254.1
Q ss_pred CEEEEEcCCChhHHHHHHHHHHC-CCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCC-HHHHHHhhccCCccE
Q 012176 119 MTVLVTGAAGFVGSHCSLALKKR-GDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLND-APLLTKLFDVVPFTH 196 (469)
Q Consensus 119 ~~VlVtGatG~IG~~l~~~L~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d-~~~l~~~~~~~~~d~ 196 (469)
|+||||||+||||++|+++|+++ |++|++++|...... ......+++++.+|++| .+.++++++++ |+
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~--------~~~~~~~~~~~~~D~~~~~~~~~~~~~~~--d~ 70 (345)
T 2bll_A 1 MRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAIS--------RFLNHPHFHFVEGDISIHSEWIEYHVKKC--DV 70 (345)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHSTTCEEEEEESCCGGGG--------GGTTCTTEEEEECCTTTCSHHHHHHHHHC--SE
T ss_pred CeEEEECCCcHHHHHHHHHHHHhCCCEEEEEeCCcchHH--------HhhcCCCeEEEeccccCcHHHHHhhccCC--CE
Confidence 68999999999999999999998 899999999654211 11234589999999998 46788899877 99
Q ss_pred EEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcCccccCCCCCCCCCCCCCC------CCCCChH
Q 012176 197 VLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRT------DQPASLY 270 (469)
Q Consensus 197 Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~------~~p~~~Y 270 (469)
|||+||.........++..++++|+.++.+++++|++.+ + +|||+||.++||.....+++|+++. ..|.+.|
T Consensus 71 vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~-~~v~~SS~~v~g~~~~~~~~e~~~~~~~~~~~~~~~~Y 148 (345)
T 2bll_A 71 VLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYR-K-RIIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIY 148 (345)
T ss_dssp EEECBCCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTT-C-EEEEECCGGGGBTCCCSSBCTTTCCCBCCCTTCGGGHH
T ss_pred EEEcccccCccchhcCHHHHHHHHHHHHHHHHHHHHHhC-C-eEEEEecHHHcCCCCCCCcCCcccccccCcccCccccc
Confidence 999999866554556788899999999999999999988 4 9999999999998776678887653 1345589
Q ss_pred HHHHHHHHHHHHHHHHHhCCcEEEEeecceecCCCCC--------CChHHHHHHHHHcCCceEEEeeCCCCcceEecccH
Q 012176 271 AATKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRP--------DMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYI 342 (469)
Q Consensus 271 ~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~Gp~~~~--------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v 342 (469)
+.+|.++|.+++.+++++|++++++||+.||||+... ...+..++..+..+.++.++ +++++.++|+|+
T Consensus 149 ~~sK~~~e~~~~~~~~~~~~~~~ilrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~g~~~~~~i~v 225 (345)
T 2bll_A 149 SVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLI---DGGKQKRCFTDI 225 (345)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCEEEEEECSEECSSCCCTTCSBSCBCHHHHHHHHHHHHTCCEEEG---GGSCCEEECEEH
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEcCCcccCCCcccccccccccccHHHHHHHHHHcCCCcEEE---CCCCEEEEEEEH
Confidence 9999999999999998889999999999999997643 23567788888899988777 567889999999
Q ss_pred HHHHHHHHHHhccCCCCCCCCCceEEEeCCCC-cccHHHHHHHHHHHhCCCccceeecCCC--------------CCCCC
Q 012176 343 DDVVKGCVGATGSGGKKRGPAQLRVYNLGNTS-PVPVGRLVSILENLLNTKAKKHVIRMPR--------------NGDVP 407 (469)
Q Consensus 343 ~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~-~vt~~el~~~i~~~~g~~~~~~~~~~~~--------------~~~~~ 407 (469)
+|+|++++.+++++.. ...+++||+++++ ++|+.|+++.+.+.+|.+......|... ..+..
T Consensus 226 ~Dva~a~~~~~~~~~~---~~~g~~~~i~~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (345)
T 2bll_A 226 RDGIEALYRIIENAGN---RCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGFRVVESSSYYGKGYQDVE 302 (345)
T ss_dssp HHHHHHHHHHHHCGGG---TTTTEEEEECCTTSEEEHHHHHHHHHHHHHTCTTGGGSCCCCCEEEC------------CC
T ss_pred HHHHHHHHHHHhhccc---cCCCceEEeCCCCCCCCHHHHHHHHHHHhCCCcccccCccccccccccchhhccccccchh
Confidence 9999999999986521 1345999999986 8999999999999999875433333211 12334
Q ss_pred cccCChHHHHHhcCCCccCcHHHHHHHHHHHHHHHcCC
Q 012176 408 YTHANVSLAYKDFGYKPTTDLAAGLRKFVKWYVSYYGI 445 (469)
Q Consensus 408 ~~~~d~~ka~~~LG~~p~~~l~~~l~~~v~~~~~~~~~ 445 (469)
...+|++|++++|||+|.++++++|+++++||++..+.
T Consensus 303 ~~~~d~~k~~~~lG~~p~~~l~~~l~~~~~~~~~~~~~ 340 (345)
T 2bll_A 303 HRKPSIRNAHRCLDWEPKIDMQETIDETLDFFLRTVDL 340 (345)
T ss_dssp CCCBCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHSCT
T ss_pred hhcccHHHHHHhcCCCccccHHHHHHHHHHHHHHcCCC
Confidence 56789999999999999999999999999999987654
|
| >2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-43 Score=352.09 Aligned_cols=316 Identities=21% Similarity=0.236 Sum_probs=259.6
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCccE
Q 012176 117 NGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTH 196 (469)
Q Consensus 117 ~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~d~ 196 (469)
++|+||||||+||||++++++|+++|++|++++|....... ..........+++++.+|++|.+.+.++++++++|+
T Consensus 2 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~---~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~ 78 (345)
T 2z1m_A 2 SGKRALITGIRGQDGAYLAKLLLEKGYEVYGADRRSGEFAS---WRLKELGIENDVKIIHMDLLEFSNIIRTIEKVQPDE 78 (345)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCCSTTTT---HHHHHTTCTTTEEECCCCTTCHHHHHHHHHHHCCSE
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEECCCccccc---ccHhhccccCceeEEECCCCCHHHHHHHHHhcCCCE
Confidence 46899999999999999999999999999999997654322 111111123479999999999999999999877899
Q ss_pred EEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcCccccCCCCCCCCCCCCCCCCCCChHHHHHHH
Q 012176 197 VLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKA 276 (469)
Q Consensus 197 Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y~~sK~~ 276 (469)
||||||......+.++++..+++|+.++.+++++|++.++.++|||+||.++||.....+++|+++. .|.+.|+.+|.+
T Consensus 79 vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~~~iv~~SS~~vyg~~~~~~~~e~~~~-~~~~~Y~~sK~~ 157 (345)
T 2z1m_A 79 VYNLAAQSFVGVSFEQPILTAEVDAIGVLRILEALRTVKPDTKFYQASTSEMFGKVQEIPQTEKTPF-YPRSPYAVAKLF 157 (345)
T ss_dssp EEECCCCCCHHHHTTSHHHHHHHHTHHHHHHHHHHHHHCTTCEEEEEEEGGGGCSCSSSSBCTTSCC-CCCSHHHHHHHH
T ss_pred EEECCCCcchhhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEEechhhcCCCCCCCCCccCCC-CCCChhHHHHHH
Confidence 9999998766666788899999999999999999998886349999999999998877788888876 788999999999
Q ss_pred HHHHHHHHHHHhCCcEEEEeecceecCCCCCCCh---HHHHHHHHHcCCceE-EEeeCCCCcceEecccHHHHHHHHHHH
Q 012176 277 GEEIAHTYNHIYGLALTGLRFFTVYGPWGRPDMA---YFFFTKDILQGKTID-VYKTQDDREVARDFTYIDDVVKGCVGA 352 (469)
Q Consensus 277 ~E~~~~~~~~~~gi~~~ilRp~~v~Gp~~~~~~~---~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~v~v~Dva~~~~~~ 352 (469)
+|.+++.++.+++++++++|++++|||+...... +..++..+..+.... +. +++++.++|+|++|+|++++.+
T Consensus 158 ~e~~~~~~~~~~~~~~~~~r~~~~~gpg~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~v~Dva~a~~~~ 234 (345)
T 2z1m_A 158 GHWITVNYREAYNMFACSGILFNHESPLRGIEFVTRKITYSLARIKYGLQDKLVL---GNLNAKRDWGYAPEYVEAMWLM 234 (345)
T ss_dssp HHHHHHHHHHHHCCCEEEEEECCEECTTSCTTSHHHHHHHHHHHHHTTSCSCEEE---SCTTCEECCEEHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCceEeeeeeeecCCCCCCcchhHHHHHHHHHHHcCCCCeeee---CCCCceeeeEEHHHHHHHHHHH
Confidence 9999999999899999999999999998655433 233455566775433 44 5678899999999999999999
Q ss_pred hccCCCCCCCCCceEEEeCCCCcccHHHHHHHHHHHhCCCcccee------------------e-cC-CCCCCCCcccCC
Q 012176 353 TGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHV------------------I-RM-PRNGDVPYTHAN 412 (469)
Q Consensus 353 ~~~~~~~~~~~~~~iyni~~~~~vt~~el~~~i~~~~g~~~~~~~------------------~-~~-~~~~~~~~~~~d 412 (469)
++++. +++||+++++++++.|+++.+.+.+|.+..+.. . +. .+..+.....+|
T Consensus 235 ~~~~~-------~~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 307 (345)
T 2z1m_A 235 MQQPE-------PDDYVIATGETHTVREFVEKAAKIAGFDIEWVGEGINEKGIDRNTGKVIVEVSEEFFRPAEVDILVGN 307 (345)
T ss_dssp HTSSS-------CCCEEECCSCCEEHHHHHHHHHHHTTCCEEEESCGGGCEEEETTTCCEEEEECGGGSCSSCCCBCCBC
T ss_pred HhCCC-------CceEEEeCCCCccHHHHHHHHHHHhCCCccccccccccccccccccccccccCcccCCCCCcceeecC
Confidence 97652 279999999999999999999999998754320 1 11 123344556789
Q ss_pred hHHHHHhcCCCccCcHHHHHHHHHHHHHHHcCCC
Q 012176 413 VSLAYKDFGYKPTTDLAAGLRKFVKWYVSYYGIQ 446 (469)
Q Consensus 413 ~~ka~~~LG~~p~~~l~~~l~~~v~~~~~~~~~~ 446 (469)
++|++++|||+|+++++++|+++++||+++.+..
T Consensus 308 ~~k~~~~lG~~p~~~~~~~l~~~~~~~~~~~~~~ 341 (345)
T 2z1m_A 308 PEKAMKKLGWKPRTTFDELVEIMMEADLKRVRDR 341 (345)
T ss_dssp CHHHHHHHCCCCCSCHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHcCCcccCCHHHHHHHHHHHHHHHhccc
Confidence 9999999999999999999999999999887643
|
| >1kew_A RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fold, lyase; HET: TYD NAD; 1.80A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1g1a_A* 1keu_A* 1bxk_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-43 Score=356.89 Aligned_cols=310 Identities=25% Similarity=0.430 Sum_probs=257.0
Q ss_pred CEEEEEcCCChhHHHHHHHHHHC-CCcEEEEeCCCCCCC-hhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCccE
Q 012176 119 MTVLVTGAAGFVGSHCSLALKKR-GDGVLGLDNFNSYYD-PSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTH 196 (469)
Q Consensus 119 ~~VlVtGatG~IG~~l~~~L~~~-G~~V~~~~r~~~~~~-~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~d~ 196 (469)
|+||||||+||||++|+++|+++ |++|++++|...... ..+ .......+++++.+|++|.+.+.++++..++|+
T Consensus 1 MkvlVTGasG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~----~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~ 76 (361)
T 1kew_A 1 MKILITGGAGFIGSAVVRHIIKNTQDTVVNIDKLTYAGNLESL----SDISESNRYNFEHADICDSAEITRIFEQYQPDA 76 (361)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHHCSCEEEEEECCCTTCCGGGG----TTTTTCTTEEEEECCTTCHHHHHHHHHHHCCSE
T ss_pred CEEEEECCCchHhHHHHHHHHhcCCCeEEEEecCCCCCchhhh----hhhhcCCCeEEEECCCCCHHHHHHHHhhcCCCE
Confidence 57999999999999999999998 799999998652111 111 111123479999999999999999998445599
Q ss_pred EEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhc--CCC------CeEEEEcCccccCCCCC--C--------CCC
Q 012176 197 VLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSV--NPQ------PSIVWASSSSVYGLNTQ--V--------PFS 258 (469)
Q Consensus 197 Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~--~~~------~~~V~~SS~~vyg~~~~--~--------~~~ 258 (469)
||||||.........+++.++++|+.++.+++++|++. +++ ++|||+||.++||.... . +++
T Consensus 77 vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~v~~~~~~~~~iv~~SS~~v~g~~~~~~~~~~~~~~~~~~ 156 (361)
T 1kew_A 77 VMHLAAESHVDRSITGPAAFIETNIVGTYALLEVARKYWSALGEDKKNNFRFHHISTDEVYGDLPHPDEVENSVTLPLFT 156 (361)
T ss_dssp EEECCSCCCHHHHHHCTHHHHHHHTHHHHHHHHHHHHHHHTSCHHHHHHCEEEEEEEGGGGCCCCCGGGSCTTSCCCCBC
T ss_pred EEECCCCcChhhhhhCHHHHHHHHHHHHHHHHHHHHHhccCcccccccCceEEEeCCHHHhCCCcccccccccccCCCCC
Confidence 99999987665566788899999999999999999988 764 39999999999986532 1 788
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHHHhCCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceEe
Q 012176 259 ESHRTDQPASLYAATKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARD 338 (469)
Q Consensus 259 E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 338 (469)
|+++. .|.+.|+.+|.++|.+++.++.++|+++++|||+.||||+..+...+..++..+..++++.++ +++++.++
T Consensus 157 E~~~~-~~~~~Y~~sK~~~e~~~~~~~~~~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 232 (361)
T 1kew_A 157 ETTAY-APSSPYSASKASSDHLVRAWRRTYGLPTIVTNCSNNYGPYHFPEKLIPLVILNALEGKPLPIY---GKGDQIRD 232 (361)
T ss_dssp TTSCC-CCCSHHHHHHHHHHHHHHHHHHHHCCCEEEEEECEEESTTCCTTSHHHHHHHHHHHTCCEEEE---TTSCCEEE
T ss_pred CCCCC-CCCCccHHHHHHHHHHHHHHHHHhCCcEEEEeeceeECCCCCcccHHHHHHHHHHcCCCceEc---CCCceeEe
Confidence 88776 788999999999999999999889999999999999999876666777888888889888887 67889999
Q ss_pred cccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCCcccHHHHHHHHHHHhCCCccc-------eeecCCCCCCCCcccC
Q 012176 339 FTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKK-------HVIRMPRNGDVPYTHA 411 (469)
Q Consensus 339 ~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~~vt~~el~~~i~~~~g~~~~~-------~~~~~~~~~~~~~~~~ 411 (469)
++|++|+|++++.+++++ ..+++||+++++++|+.|+++.+.+.+|.+... ......+.++...+.+
T Consensus 233 ~i~v~Dva~a~~~~~~~~------~~g~~~~v~~~~~~s~~e~~~~i~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 306 (361)
T 1kew_A 233 WLYVEDHARALHMVVTEG------KAGETYNIGGHNEKKNLDVVFTICDLLDEIVPKATSYREQITYVADRPGHDRRYAI 306 (361)
T ss_dssp EEEHHHHHHHHHHHHHHC------CTTCEEEECCCCEEEHHHHHHHHHHHHHHHSCCSSCGGGGEEEECCCTTCCCBCCB
T ss_pred eEEHHHHHHHHHHHHhCC------CCCCEEEecCCCeeeHHHHHHHHHHHhCCcCccccccccceeecCCCCcccceeec
Confidence 999999999999998764 235899999999999999999999999875421 1111123334455678
Q ss_pred ChHHHHHhcCCCccCcHHHHHHHHHHHHHHH
Q 012176 412 NVSLAYKDFGYKPTTDLAAGLRKFVKWYVSY 442 (469)
Q Consensus 412 d~~ka~~~LG~~p~~~l~~~l~~~v~~~~~~ 442 (469)
|++|++++|||+|+++++++|+++++||++.
T Consensus 307 d~~k~~~~lG~~p~~~~~e~l~~~~~~~~~~ 337 (361)
T 1kew_A 307 DAGKISRELGWKPLETFESGIRKTVEWYLAN 337 (361)
T ss_dssp CCHHHHHHHCCCCSCCHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHhCCCCccCHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999864
|
| >1e6u_A GDP-fucose synthetase; epimerase/reductase, SDR, RED; HET: NAP; 1.45A {Escherichia coli} SCOP: c.2.1.2 PDB: 1e7q_A* 1bsv_A* 1fxs_A* 1gfs_A 1e7s_A* 1bws_A* 1e7r_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-44 Score=353.21 Aligned_cols=299 Identities=20% Similarity=0.314 Sum_probs=248.5
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCccE
Q 012176 117 NGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTH 196 (469)
Q Consensus 117 ~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~d~ 196 (469)
.+|+||||||+||||++|+++|+++|++|++++|.. .+|+.|.+.+.++++..++|+
T Consensus 2 ~~~~ilVtGatG~iG~~l~~~L~~~g~~v~~~~r~~-----------------------~~D~~d~~~~~~~~~~~~~d~ 58 (321)
T 1e6u_A 2 AKQRVFIAGHRGMVGSAIRRQLEQRGDVELVLRTRD-----------------------ELNLLDSRAVHDFFASERIDQ 58 (321)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHTTCTTEEEECCCTT-----------------------TCCTTCHHHHHHHHHHHCCSE
T ss_pred CCCEEEEECCCcHHHHHHHHHHHhCCCeEEEEecCc-----------------------cCCccCHHHHHHHHHhcCCCE
Confidence 357999999999999999999999999999988731 279999999999998444599
Q ss_pred EEEcccccC-hhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcCccccCCCCCCCCCCCCC---CCCCC-ChHH
Q 012176 197 VLHLAAQAG-VRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHR---TDQPA-SLYA 271 (469)
Q Consensus 197 Vih~Aa~~~-~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~---~~~p~-~~Y~ 271 (469)
|||+|+... ......++..++++|+.++.+++++|++.+++ +|||+||.++||.....+++|+++ +..|. +.|+
T Consensus 59 vih~a~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~v~~SS~~vyg~~~~~~~~E~~~~~~~~~p~~~~Y~ 137 (321)
T 1e6u_A 59 VYLAAAKVGGIVANNTYPADFIYQNMMIESNIIHAAHQNDVN-KLLFLGSSCIYPKLAKQPMAESELLQGTLEPTNEPYA 137 (321)
T ss_dssp EEECCCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCC-EEEEECCGGGSCTTCCSSBCGGGTTSSCCCGGGHHHH
T ss_pred EEEcCeecCCcchhhhCHHHHHHHHHHHHHHHHHHHHHhCCC-eEEEEccHHHcCCCCCCCcCccccccCCCCCCCCccH
Confidence 999999754 23445678889999999999999999999886 999999999999877778888873 22443 5899
Q ss_pred HHHHHHHHHHHHHHHHhCCcEEEEeecceecCCCCCC----ChHHHHHHHHHc----C-CceEEEeeCCCCcceEecccH
Q 012176 272 ATKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPD----MAYFFFTKDILQ----G-KTIDVYKTQDDREVARDFTYI 342 (469)
Q Consensus 272 ~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~Gp~~~~~----~~~~~~~~~~~~----g-~~~~~~~~~~~~~~~~~~v~v 342 (469)
.+|.++|.+++.++.++|++++++||+.||||+.... .++..++..+.. | .++.++ +++++.++|+|+
T Consensus 138 ~sK~~~E~~~~~~~~~~~~~~~ilrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~---~~g~~~~~~i~v 214 (321)
T 1e6u_A 138 IAKIAGIKLCESYNRQYGRDYRSVMPTNLYGPHDNFHPSNSHVIPALLRRFHEATAQKAPDVVVW---GSGTPMREFLHV 214 (321)
T ss_dssp HHHHHHHHHHHHHHHHHCCEEEEEEECEEESTTCCCCTTCSSHHHHHHHHHHHHHHHTCSEEEEE---SCSCCEECEEEH
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEEeCCcCCcCCCCCCCCCccHHHHHHHHHHhhhcCCCceEEc---CCCCEEEEeEEH
Confidence 9999999999999988899999999999999987532 466677777664 3 567767 668899999999
Q ss_pred HHHHHHHHHHhccCCCC---CCCCCceEEEeCCCCcccHHHHHHHHHHHhCCCccceeecCCCCCCCCcccCChHHHHHh
Q 012176 343 DDVVKGCVGATGSGGKK---RGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRNGDVPYTHANVSLAYKD 419 (469)
Q Consensus 343 ~Dva~~~~~~~~~~~~~---~~~~~~~iyni~~~~~vt~~el~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~d~~ka~~~ 419 (469)
+|+|++++.+++++... .....+++||+++++++|+.|+++.+.+.+|.+..+...+. +..+.....+|++|+++
T Consensus 215 ~Dva~~~~~~~~~~~~~~~~~~~~~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~-~~~~~~~~~~d~~k~~~- 292 (321)
T 1e6u_A 215 DDMAAASIHVMELAHEVWLENTQPMLSHINVGTGVDCTIRELAQTIAKVVGYKGRVVFDAS-KPDGTPRKLLDVTRLHQ- 292 (321)
T ss_dssp HHHHHHHHHHHHSCHHHHHHTSBTTBCCEEESCSCCEEHHHHHHHHHHHHTCCSEEEEETT-SCCCCSBCCBCCHHHHH-
T ss_pred HHHHHHHHHHHhCcccccccccccCCceEEeCCCCCccHHHHHHHHHHHhCCCCceEeCCC-CCCCcccccCCHHHHHh-
Confidence 99999999999875210 00012589999999999999999999999998876665553 23455667899999999
Q ss_pred cCCCccCcHHHHHHHHHHHHHHHcC
Q 012176 420 FGYKPTTDLAAGLRKFVKWYVSYYG 444 (469)
Q Consensus 420 LG~~p~~~l~~~l~~~v~~~~~~~~ 444 (469)
|||+|+++++++|+++++||+++.+
T Consensus 293 lG~~p~~~~~~~l~~~~~~~~~~~~ 317 (321)
T 1e6u_A 293 LGWYHEISLEAGLASTYQWFLENQD 317 (321)
T ss_dssp TTCCCCCCHHHHHHHHHHHHHHTC-
T ss_pred cCCccCCcHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999987654
|
| >2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-43 Score=356.81 Aligned_cols=305 Identities=25% Similarity=0.339 Sum_probs=257.5
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCcc
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFT 195 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~d 195 (469)
..+|+||||||+||||++|+++|+++|++|++++|....... ....+++++.+|++|.+.+.++++++ |
T Consensus 27 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~---------~~~~~v~~~~~Dl~d~~~~~~~~~~~--d 95 (379)
T 2c5a_A 27 SENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMT---------EDMFCDEFHLVDLRVMENCLKVTEGV--D 95 (379)
T ss_dssp TSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCSSSC---------GGGTCSEEEECCTTSHHHHHHHHTTC--S
T ss_pred ccCCeEEEECCccHHHHHHHHHHHHCCCeEEEEECCCccchh---------hccCCceEEECCCCCHHHHHHHhCCC--C
Confidence 356899999999999999999999999999999997653321 11247899999999999999999876 9
Q ss_pred EEEEcccccChh-hhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcCccccCCCCC-----CCCCCCCC-CCCCCC
Q 012176 196 HVLHLAAQAGVR-YAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQ-----VPFSESHR-TDQPAS 268 (469)
Q Consensus 196 ~Vih~Aa~~~~~-~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS~~vyg~~~~-----~~~~E~~~-~~~p~~ 268 (469)
+|||+||..... +...+++.++++|+.++.+++++|++.+++ +|||+||.++|+.... .+++|+++ +..|.+
T Consensus 96 ~Vih~A~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~a~~~~~~~-~~V~~SS~~v~~~~~~~~~~~~~~~E~~~~~~~~~~ 174 (379)
T 2c5a_A 96 HVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARINGIK-RFFYASSACIYPEFKQLETTNVSLKESDAWPAEPQD 174 (379)
T ss_dssp EEEECCCCCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHTTCS-EEEEEEEGGGSCGGGSSSSSSCEECGGGGSSBCCSS
T ss_pred EEEECceecCcccccccCHHHHHHHHHHHHHHHHHHHHHcCCC-EEEEEeehheeCCCCCCCccCCCcCcccCCCCCCCC
Confidence 999999975432 235788899999999999999999999876 9999999999986432 34677662 226778
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCcEEEEeecceecCCCCCC----ChHHHHHHHHHcCCc-eEEEeeCCCCcceEecccHH
Q 012176 269 LYAATKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPD----MAYFFFTKDILQGKT-IDVYKTQDDREVARDFTYID 343 (469)
Q Consensus 269 ~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~Gp~~~~~----~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~v~v~ 343 (469)
.|+.+|.++|.+++.++.++|+++++|||+.||||+.... ..+..++..+..+.+ +.++ +++++.++|+|++
T Consensus 175 ~Y~~sK~~~E~~~~~~~~~~gi~~~ilrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---g~g~~~~~~i~v~ 251 (379)
T 2c5a_A 175 AFGLEKLATEELCKHYNKDFGIECRIGRFHNIYGPFGTWKGGREKAPAAFCRKAQTSTDRFEMW---GDGLQTRSFTFID 251 (379)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTSCCSSSCCCHHHHHHHHHHHCSSCEEEE---SCSCCEECCEEHH
T ss_pred hhHHHHHHHHHHHHHHHHHHCCCEEEEEeCceeCcCCCcccccccHHHHHHHHHHhCCCceEEe---CCCCeeEEEEEHH
Confidence 9999999999999999988899999999999999976542 256778888888876 7777 6788999999999
Q ss_pred HHHHHHHHHhccCCCCCCCCCceEEEeCCCCcccHHHHHHHHHHHhCCCccceeecCCCCCCCCcccCChHHHHHhcCCC
Q 012176 344 DVVKGCVGATGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRNGDVPYTHANVSLAYKDFGYK 423 (469)
Q Consensus 344 Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~~vt~~el~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~d~~ka~~~LG~~ 423 (469)
|+|++++.+++++ .+++||+++++++|+.|+++.+.+.+|.+......|.+. ......+|++|++++|||+
T Consensus 252 Dva~ai~~~l~~~-------~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~p~~~--~~~~~~~d~~k~~~~lG~~ 322 (379)
T 2c5a_A 252 ECVEGVLRLTKSD-------FREPVNIGSDEMVSMNEMAEMVLSFEEKKLPIHHIPGPE--GVRGRNSDNNLIKEKLGWA 322 (379)
T ss_dssp HHHHHHHHHHHSS-------CCSCEEECCCCCEEHHHHHHHHHHTTTCCCCEEEECCCC--CCSBCEECCHHHHHHHSCC
T ss_pred HHHHHHHHHhhcc-------CCCeEEeCCCCccCHHHHHHHHHHHhCCCCceeeCCCCC--CcccccCCHHHHHHHhCCC
Confidence 9999999999764 138999999999999999999999999887766665432 3445678999999999999
Q ss_pred ccCcHHHHHHHHHHHHHHHcC
Q 012176 424 PTTDLAAGLRKFVKWYVSYYG 444 (469)
Q Consensus 424 p~~~l~~~l~~~v~~~~~~~~ 444 (469)
|+++++++|+++++||+++..
T Consensus 323 p~~~l~e~l~~~~~~~~~~~~ 343 (379)
T 2c5a_A 323 PNMRLKEGLRITYFWIKEQIE 343 (379)
T ss_dssp CCCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHhHh
Confidence 999999999999999998765
|
| >3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-44 Score=353.59 Aligned_cols=301 Identities=29% Similarity=0.402 Sum_probs=255.6
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCcc
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFT 195 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~d 195 (469)
..+|+||||||+||||++|+++|+++|++|++++|.......... .........+++++.+|+. ++|
T Consensus 5 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~-~~~~~~~~~~~~~~~~Dl~------------~~d 71 (321)
T 3vps_A 5 TLKHRILITGGAGFIGGHLARALVASGEEVTVLDDLRVPPMIPPE-GTGKFLEKPVLELEERDLS------------DVR 71 (321)
T ss_dssp --CCEEEEETTTSHHHHHHHHHHHHTTCCEEEECCCSSCCSSCCT-TSSEEECSCGGGCCHHHHT------------TEE
T ss_pred cCCCeEEEECCCChHHHHHHHHHHHCCCEEEEEecCCcccccchh-hhhhhccCCCeeEEeCccc------------cCC
Confidence 357899999999999999999999999999999997652100000 0001112235566666655 459
Q ss_pred EEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcCccccCCCCCCCCCCCCCCCCCCChHHHHHH
Q 012176 196 HVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKK 275 (469)
Q Consensus 196 ~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y~~sK~ 275 (469)
+|||+||.........++...++ |+.++.+++++|++.+++ +|||+||.++|+.....+++|+++. .|.+.|+.+|.
T Consensus 72 ~vi~~a~~~~~~~~~~~~~~~~~-n~~~~~~ll~a~~~~~v~-~~v~~SS~~v~~~~~~~~~~E~~~~-~p~~~Y~~sK~ 148 (321)
T 3vps_A 72 LVYHLASHKSVPRSFKQPLDYLD-NVDSGRHLLALCTSVGVP-KVVVGSTCEVYGQADTLPTPEDSPL-SPRSPYAASKV 148 (321)
T ss_dssp EEEECCCCCCHHHHTTSTTTTHH-HHHHHHHHHHHHHHHTCC-EEEEEEEGGGGCSCSSSSBCTTSCC-CCCSHHHHHHH
T ss_pred EEEECCccCChHHHHhCHHHHHH-HHHHHHHHHHHHHHcCCC-eEEEecCHHHhCCCCCCCCCCCCCC-CCCChhHHHHH
Confidence 99999998877667777777888 999999999999999976 9999999999998888899999887 78899999999
Q ss_pred HHHHHHHHHHHHhCC-cEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceEecccHHHHHHHHHHHhc
Q 012176 276 AGEEIAHTYNHIYGL-ALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGATG 354 (469)
Q Consensus 276 ~~E~~~~~~~~~~gi-~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~~~~~~~~ 354 (469)
++|.+++.++.++|+ +++++||+.||||+.....++..++..+..++++.++ +++++.++|+|++|+|++++.++.
T Consensus 149 ~~E~~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~v~v~Dva~~~~~~~~ 225 (321)
T 3vps_A 149 GLEMVAGAHQRASVAPEVGIVRFFNVYGPGERPDALVPRLCANLLTRNELPVE---GDGEQRRDFTYITDVVDKLVALAN 225 (321)
T ss_dssp HHHHHHHHHHHSSSSCEEEEEEECEEECTTCCTTSHHHHHHHHHHHHSEEEEE---TTSCCEECEEEHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHcCCCceEEEEeccccCcCCCCCChHHHHHHHHHcCCCeEEe---CCCCceEceEEHHHHHHHHHHHHh
Confidence 999999999998899 9999999999999988777888999999999999888 778899999999999999999998
Q ss_pred cCCCCCCCCCceEEEeCCCCcccHHHHHHHHHHHhCCCccceeecCCCCCCCCcccCChHHHHHhcCCCc-cCcHHHHHH
Q 012176 355 SGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRNGDVPYTHANVSLAYKDFGYKP-TTDLAAGLR 433 (469)
Q Consensus 355 ~~~~~~~~~~~~iyni~~~~~vt~~el~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~d~~ka~~~LG~~p-~~~l~~~l~ 433 (469)
++. . | +||+++++++|+.|+++.+. .+|.+..+...+.. ..+.....+|++|++++|||+| .++++++|+
T Consensus 226 ~~~-----~-g-~~~i~~~~~~s~~e~~~~i~-~~g~~~~~~~~~~~-~~~~~~~~~d~~k~~~~lG~~p~~~~~~~~l~ 296 (321)
T 3vps_A 226 RPL-----P-S-VVNFGSGQSLSVNDVIRILQ-ATSPAAEVARKQPR-PNEITEFRADTALQTRQIGERSGGIGIEEGIR 296 (321)
T ss_dssp SCC-----C-S-EEEESCSCCEEHHHHHHHHH-TTCTTCEEEEECCC-TTCCSBCCBCCHHHHHHHCCCSCCCCHHHHHH
T ss_pred cCC-----C-C-eEEecCCCcccHHHHHHHHH-HhCCCCccccCCCC-CCCcceeeccHHHHHHHhCCCCCcCCHHHHHH
Confidence 763 2 4 99999999999999999999 99998877766543 5566778899999999999999 889999999
Q ss_pred HHHHHHHHHcC
Q 012176 434 KFVKWYVSYYG 444 (469)
Q Consensus 434 ~~v~~~~~~~~ 444 (469)
++++||++...
T Consensus 297 ~~~~~~~~~~~ 307 (321)
T 3vps_A 297 LTLEWWQSRDL 307 (321)
T ss_dssp HHHHHHHTSCT
T ss_pred HHHHHHHhCCC
Confidence 99999987653
|
| >1db3_A GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lyase; 2.30A {Escherichia coli} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-43 Score=354.66 Aligned_cols=319 Identities=21% Similarity=0.219 Sum_probs=255.3
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCC-hhHHHHHHHh-hccCCeEEEEecCCCHHHHHHhhccCCcc
Q 012176 118 GMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYD-PSLKRARQKL-LQKHQVFIVEGDLNDAPLLTKLFDVVPFT 195 (469)
Q Consensus 118 ~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~-~~~~~~~~~~-~~~~~v~~v~~Dl~d~~~l~~~~~~~~~d 195 (469)
+|+||||||+||||++++++|+++|++|++++|...... ..+....... ....+++++.+|++|.+++.++++++++|
T Consensus 1 m~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 80 (372)
T 1db3_A 1 SKVALITGVTGQDGSYLAEFLLEKGYEVHGIKRRASSFNTERVDHIYQDPHTCNPKFHLHYGDLSDTSNLTRILREVQPD 80 (372)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEECC---------------------CCEEECCCCSSCHHHHHHHHHHHCCS
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEECCCcccchHHHHHHhhccccCCCceEEEECCCCCHHHHHHHHHhcCCC
Confidence 478999999999999999999999999999999654211 0011000000 01247899999999999999999987779
Q ss_pred EEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCC--CeEEEEcCccccCCCCCCCCCCCCCCCCCCChHHHH
Q 012176 196 HVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQ--PSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAAT 273 (469)
Q Consensus 196 ~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~--~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y~~s 273 (469)
+||||||........+++...+++|+.++.+++++|++.+++ ++||++||.++||.....+++|+++. .|.+.|+.+
T Consensus 81 ~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~iv~~SS~~v~g~~~~~~~~E~~~~-~~~~~Y~~s 159 (372)
T 1db3_A 81 EVYNLGAMSHVAVSFESPEYTADVDAMGTLRLLEAIRFLGLEKKTRFYQASTSELYGLVQEIPQKETTPF-YPRSPYAVA 159 (372)
T ss_dssp EEEECCCCCTTTTTTSCHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEEEGGGGTTCCSSSBCTTSCC-CCCSHHHHH
T ss_pred EEEECCcccCccccccCHHHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCChhhhCCCCCCCCCccCCC-CCCChHHHH
Confidence 999999986655566778889999999999999999998872 49999999999998776788998876 778999999
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEeecceecCCCCCCC---hHHHHHHHHHcCCc-eEEEeeCCCCcceEecccHHHHHHHH
Q 012176 274 KKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPDM---AYFFFTKDILQGKT-IDVYKTQDDREVARDFTYIDDVVKGC 349 (469)
Q Consensus 274 K~~~E~~~~~~~~~~gi~~~ilRp~~v~Gp~~~~~~---~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~v~v~Dva~~~ 349 (469)
|.++|.+++.++.+++++++++|++.+|||+..... .+..++..+..|+. ...+ +++++.++|+|++|+|+++
T Consensus 160 K~~~e~~~~~~~~~~~~~~~~~r~~~~~gp~~~~~~~~~~~~~~~~~~~~g~~~~~~~---g~~~~~~~~i~v~Dva~a~ 236 (372)
T 1db3_A 160 KLYAYWITVNYRESYGMYACNGILFNHESPRRGETFVTRKITRAIANIAQGLESCLYL---GNMDSLRDWGHAKDYVKMQ 236 (372)
T ss_dssp HHHHHHHHHHHHHHHCCCEEEEEECCEECTTSCTTSHHHHHHHHHHHHHTTSCCCEEE---SCTTCEECCEEHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCeEEEEECCccCCCCCCcchhhHHHHHHHHHHcCCCCceee---cCCCceeeeeEHHHHHHHH
Confidence 999999999999989999999999999999865443 23456666777764 3444 6688999999999999999
Q ss_pred HHHhccCCCCCCCCCceEEEeCCCCcccHHHHHHHHHHHhCCCcccee-----------------------------ecC
Q 012176 350 VGATGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHV-----------------------------IRM 400 (469)
Q Consensus 350 ~~~~~~~~~~~~~~~~~iyni~~~~~vt~~el~~~i~~~~g~~~~~~~-----------------------------~~~ 400 (469)
+.+++++. +++||+++++++|+.|+++.+.+.+|.+..+.. .+.
T Consensus 237 ~~~~~~~~-------~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (372)
T 1db3_A 237 WMMLQQEQ-------PEDFVIATGVQYSVRQFVEMAAAQLGIKLRFEGTGVEEKGIVVSVTGHDAPGVKPGDVIIAVDPR 309 (372)
T ss_dssp HHTTSSSS-------CCCEEECCCCCEEHHHHHHHHHHTTTEEEEEESCGGGCEEEEEEECSSSCTTCCTTCEEEEECGG
T ss_pred HHHHhcCC-------CceEEEcCCCceeHHHHHHHHHHHhCCCcccccccccccccccccccccccccccccceeecccc
Confidence 99987652 289999999999999999999999997654221 011
Q ss_pred -CCCCCCCcccCChHHHHHhcCCCccCcHHHHHHHHHHHHHHHcCCCC
Q 012176 401 -PRNGDVPYTHANVSLAYKDFGYKPTTDLAAGLRKFVKWYVSYYGIQP 447 (469)
Q Consensus 401 -~~~~~~~~~~~d~~ka~~~LG~~p~~~l~~~l~~~v~~~~~~~~~~~ 447 (469)
.+..+.....+|++|++++|||+|+++++++|+++++||++..+.+.
T Consensus 310 ~~~~~~~~~~~~d~~k~~~~lG~~p~~~l~e~l~~~~~~~~~~~~~~~ 357 (372)
T 1db3_A 310 YFRPAEVETLLGDPTKAHEKLGWKPEITLREMVSEMVANDLEAAKKHS 357 (372)
T ss_dssp GCCCCC-CCCCBCCHHHHHHHCCCCCSCHHHHHHHHHHHHHHHHHTTC
T ss_pred ccCCCchhhhccCHHHHHHHhCCccccCHHHHHHHHHHHHHHhhhccc
Confidence 12334455678999999999999999999999999999999987544
|
| >1t2a_A GDP-mannose 4,6 dehydratase; structural genomics consortium, rossman-fold, short-chain dehydrogenase/reductase, SDR, structural genomics,lyase; HET: NDP GDP; 1.84A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-43 Score=354.77 Aligned_cols=316 Identities=19% Similarity=0.200 Sum_probs=256.7
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCCh-hHHHHHHHhh--ccCCeEEEEecCCCHHHHHHhhccCCcc
Q 012176 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDP-SLKRARQKLL--QKHQVFIVEGDLNDAPLLTKLFDVVPFT 195 (469)
Q Consensus 119 ~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~-~~~~~~~~~~--~~~~v~~v~~Dl~d~~~l~~~~~~~~~d 195 (469)
|+||||||+||||++|+++|+++|++|++++|....... .+........ ...+++++.+|++|.+.+.++++++++|
T Consensus 25 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 104 (375)
T 1t2a_A 25 NVALITGITGQDGSYLAEFLLEKGYEVHGIVRRSSSFNTGRIEHLYKNPQAHIEGNMKLHYGDLTDSTCLVKIINEVKPT 104 (375)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCTTTGGGC---------CEEEEECCTTCHHHHHHHHHHHCCS
T ss_pred cEEEEECCCchHHHHHHHHHHHCCCEEEEEECCccccchhhHHHHhhhhccccCCCceEEEccCCCHHHHHHHHHhcCCC
Confidence 689999999999999999999999999999997653211 1110000000 1247899999999999999999987789
Q ss_pred EEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCC--CeEEEEcCccccCCCCCCCCCCCCCCCCCCChHHHH
Q 012176 196 HVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQ--PSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAAT 273 (469)
Q Consensus 196 ~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~--~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y~~s 273 (469)
+||||||........++++..+++|+.++.+++++|++.+++ ++|||+||.++|+.....+++|+++. .|.+.|+.+
T Consensus 105 ~vih~A~~~~~~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~~~~iv~~SS~~~~~~~~~~~~~E~~~~-~~~~~Y~~s 183 (375)
T 1t2a_A 105 EIYNLGAQSHVKISFDLAEYTADVDGVGTLRLLDAVKTCGLINSVKFYQASTSELYGKVQEIPQKETTPF-YPRSPYGAA 183 (375)
T ss_dssp EEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEEEGGGTCSCSSSSBCTTSCC-CCCSHHHHH
T ss_pred EEEECCCcccccccccCHHHHHHHHHHHHHHHHHHHHHhCCCccceEEEecchhhhCCCCCCCCCccCCC-CCCChhHHH
Confidence 999999986665556788899999999999999999998872 39999999999998777789998876 678999999
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEeecceecCCCCCCCh---HHHHHHHHHcCCce-EEEeeCCCCcceEecccHHHHHHHH
Q 012176 274 KKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPDMA---YFFFTKDILQGKTI-DVYKTQDDREVARDFTYIDDVVKGC 349 (469)
Q Consensus 274 K~~~E~~~~~~~~~~gi~~~ilRp~~v~Gp~~~~~~~---~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~v~v~Dva~~~ 349 (469)
|.++|.+++.++.+++++++++||+.+|||+...... +..++..+..|... ..+ +++++.++|+|++|+|+++
T Consensus 184 K~~~e~~~~~~~~~~~~~~~i~r~~~~~gp~~~~~~~~~~~~~~~~~~~~g~~~~~~~---g~~~~~~~~i~v~Dva~a~ 260 (375)
T 1t2a_A 184 KLYAYWIVVNFREAYNLFAVNGILFNHESPRRGANFVTRKISRSVAKIYLGQLECFSL---GNLDAKRDWGHAKDYVEAM 260 (375)
T ss_dssp HHHHHHHHHHHHHHHCCEEEEEEECCEECTTSCTTSHHHHHHHHHHHHHHTSCSCEEE---SCTTCEECCEEHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCEEEEecccccCCCCCCCcchHHHHHHHHHHHcCCCceeEe---CCCCceeeeEEHHHHHHHH
Confidence 9999999999999899999999999999997654432 34555666677643 344 6688999999999999999
Q ss_pred HHHhccCCCCCCCCCceEEEeCCCCcccHHHHHHHHHHHhCCCccce------------------ee-cC-CCCCCCCcc
Q 012176 350 VGATGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKH------------------VI-RM-PRNGDVPYT 409 (469)
Q Consensus 350 ~~~~~~~~~~~~~~~~~iyni~~~~~vt~~el~~~i~~~~g~~~~~~------------------~~-~~-~~~~~~~~~ 409 (469)
+.+++++. +++||+++++++|+.|+++.+.+.+|.+..+. .. +. .+..+....
T Consensus 261 ~~~~~~~~-------~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (375)
T 1t2a_A 261 WLMLQNDE-------PEDFVIATGEVHSVREFVEKSFLHIGKTIVWEGKNENEVGRCKETGKVHVTVDLKYYRPTEVDFL 333 (375)
T ss_dssp HHHHHSSS-------CCCEEECCSCCEEHHHHHHHHHHHTTCCEEEESCGGGCEEEETTTCCEEEEECGGGSCSSCCCBC
T ss_pred HHHHhcCC-------CceEEEeCCCcccHHHHHHHHHHHhCCCcccccccccccccccccccceeecCcccCCcccchhh
Confidence 99998652 28999999999999999999999999875422 01 11 123445566
Q ss_pred cCChHHHHHhcCCCccCcHHHHHHHHHHHHHHHcCC
Q 012176 410 HANVSLAYKDFGYKPTTDLAAGLRKFVKWYVSYYGI 445 (469)
Q Consensus 410 ~~d~~ka~~~LG~~p~~~l~~~l~~~v~~~~~~~~~ 445 (469)
.+|++|++++|||+|+++++++|+++++||++..+.
T Consensus 334 ~~d~~k~~~~lG~~p~~~l~e~l~~~~~~~~~~~~~ 369 (375)
T 1t2a_A 334 QGDCTKAKQKLNWKPRVAFDELVREMVHADVELMRT 369 (375)
T ss_dssp CBCCHHHHHHHCCCCCSCHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHhcCCCccCCHHHHHHHHHHHHHHhhcc
Confidence 789999999999999999999999999999988764
|
| >2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, STRU genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP: c.2.1.2 PDB: 4ef7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-42 Score=346.04 Aligned_cols=305 Identities=26% Similarity=0.393 Sum_probs=252.7
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCcc
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFT 195 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~d 195 (469)
.++|+||||||+||||++|+++|+++|++|++++|......... .......++.++.+|+.|.. +.++ |
T Consensus 25 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~----~~~~~~~~~~~~~~D~~~~~-----~~~~--d 93 (343)
T 2b69_A 25 KDRKRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNV----EHWIGHENFELINHDVVEPL-----YIEV--D 93 (343)
T ss_dssp --CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCGGGT----GGGTTCTTEEEEECCTTSCC-----CCCC--S
T ss_pred cCCCEEEEEcCccHHHHHHHHHHHHCCCEEEEEeCCCccchhhh----hhhccCCceEEEeCccCChh-----hcCC--C
Confidence 56789999999999999999999999999999999654221111 11122357999999998853 4444 9
Q ss_pred EEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcCccccCCCCCCCCCCCCC----CCCCCChHH
Q 012176 196 HVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHR----TDQPASLYA 271 (469)
Q Consensus 196 ~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~----~~~p~~~Y~ 271 (469)
+|||+||.........++...+++|+.++.+++++|++.+. +|||+||.++||.....+++|+++ +..|.+.|+
T Consensus 94 ~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~--~~v~~SS~~v~g~~~~~~~~E~~~~~~~~~~~~~~Y~ 171 (343)
T 2b69_A 94 QIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGA--RLLLASTSEVYGDPEVHPQSEDYWGHVNPIGPRACYD 171 (343)
T ss_dssp EEEECCSCCSHHHHTTCHHHHHHHHHHHHHHHHHHHHHHTC--EEEEEEEGGGGBSCSSSSBCTTCCCBCCSSSTTHHHH
T ss_pred EEEECccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHhCC--cEEEECcHHHhCCCCCCCCcccccccCCCCCCCCchH
Confidence 99999998665555678888999999999999999999884 899999999999776668888741 225677899
Q ss_pred HHHHHHHHHHHHHHHHhCCcEEEEeecceecCCCCC--CChHHHHHHHHHcCCceEEEeeCCCCcceEecccHHHHHHHH
Q 012176 272 ATKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRP--DMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGC 349 (469)
Q Consensus 272 ~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~Gp~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~~~ 349 (469)
.+|.++|.+++.++.++|++++++||+.||||+... ...+..++..+..++++.++ +++++.++|+|++|+|+++
T Consensus 172 ~sK~~~E~~~~~~~~~~~~~~~ilrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~v~v~Dva~a~ 248 (343)
T 2b69_A 172 EGKRVAETMCYAYMKQEGVEVRVARIFNTFGPRMHMNDGRVVSNFILQALQGEPLTVY---GSGSQTRAFQYVSDLVNGL 248 (343)
T ss_dssp HHHHHHHHHHHHHHHHHCCCEEEEEECCEECTTCCTTCCCHHHHHHHHHHHTCCEEEE---SSSCCEEECEEHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCcEEEEEEcceeCcCCCCCcccHHHHHHHHHHcCCCceEc---CCCCeEEeeEeHHHHHHHH
Confidence 999999999999998889999999999999997653 34667788888899988877 6688999999999999999
Q ss_pred HHHhccCCCCCCCCCceEEEeCCCCcccHHHHHHHHHHHhCCCccceeecCCCCCCCCcccCChHHHHHhcCCCccCcHH
Q 012176 350 VGATGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRNGDVPYTHANVSLAYKDFGYKPTTDLA 429 (469)
Q Consensus 350 ~~~~~~~~~~~~~~~~~iyni~~~~~vt~~el~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~~l~ 429 (469)
+.+++.+. +++||+++++++|+.|+++.+.+.+|.+..+...|.. ..+.....+|++|++++|||+|.++++
T Consensus 249 ~~~~~~~~-------~~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~p~~-~~~~~~~~~d~~k~~~~lG~~p~~~l~ 320 (343)
T 2b69_A 249 VALMNSNV-------SSPVNLGNPEEHTILEFAQLIKNLVGSGSEIQFLSEA-QDDPQKRKPDIKKAKLMLGWEPVVPLE 320 (343)
T ss_dssp HHHHTSSC-------CSCEEESCCCEEEHHHHHHHHHHHHTCCCCEEEECCC-TTCCCCCCBCCHHHHHHHCCCCCSCHH
T ss_pred HHHHhcCC-------CCeEEecCCCCCcHHHHHHHHHHHhCCCCCceeCCCC-CCCCceecCCHHHHHHHcCCCCCCCHH
Confidence 99987541 3899999999999999999999999998776665543 234556778999999999999999999
Q ss_pred HHHHHHHHHHHHHcC
Q 012176 430 AGLRKFVKWYVSYYG 444 (469)
Q Consensus 430 ~~l~~~v~~~~~~~~ 444 (469)
++|+++++||++..+
T Consensus 321 e~l~~~~~~~~~~~~ 335 (343)
T 2b69_A 321 EGLNKAIHYFRKELE 335 (343)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999987653
|
| >3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics, infectious diseases, bacillus anthracis STR. AMES, rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus anthracis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-43 Score=343.93 Aligned_cols=277 Identities=18% Similarity=0.189 Sum_probs=245.5
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCccEEE
Q 012176 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTHVL 198 (469)
Q Consensus 119 ~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~d~Vi 198 (469)
|+||||||+||||++++++|+++|++|++++|. .+|++|.+.+.++++..++|+||
T Consensus 6 m~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~------------------------~~D~~d~~~~~~~~~~~~~d~vi 61 (287)
T 3sc6_A 6 ERVIITGANGQLGKQLQEELNPEEYDIYPFDKK------------------------LLDITNISQVQQVVQEIRPHIII 61 (287)
T ss_dssp EEEEEESTTSHHHHHHHHHSCTTTEEEEEECTT------------------------TSCTTCHHHHHHHHHHHCCSEEE
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCCEEEEeccc------------------------ccCCCCHHHHHHHHHhcCCCEEE
Confidence 489999999999999999999999999999981 27999999999999965669999
Q ss_pred EcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcCccccCCCCCCCCCCCCCCCCCCChHHHHHHHHH
Q 012176 199 HLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGE 278 (469)
Q Consensus 199 h~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y~~sK~~~E 278 (469)
|+||.......+.++...+++|+.++.+++++|++.+. +|||+||.++|+.....+++|+++. .|.+.|+.+|.++|
T Consensus 62 ~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~v~~SS~~vy~~~~~~~~~E~~~~-~p~~~Y~~sK~~~E 138 (287)
T 3sc6_A 62 HCAAYTKVDQAEKERDLAYVINAIGARNVAVASQLVGA--KLVYISTDYVFQGDRPEGYDEFHNP-APINIYGASKYAGE 138 (287)
T ss_dssp ECCCCCCHHHHTTCHHHHHHHHTHHHHHHHHHHHHHTC--EEEEEEEGGGSCCCCSSCBCTTSCC-CCCSHHHHHHHHHH
T ss_pred ECCcccChHHHhcCHHHHHHHHHHHHHHHHHHHHHcCC--eEEEEchhhhcCCCCCCCCCCCCCC-CCCCHHHHHHHHHH
Confidence 99999877777789999999999999999999999986 7999999999998888899999987 78899999999999
Q ss_pred HHHHHHHHHhCCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceEecccHHHHHHHHHHHhccCCC
Q 012176 279 EIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGATGSGGK 358 (469)
Q Consensus 279 ~~~~~~~~~~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~~~~~~~~~~~~ 358 (469)
.+++.++ .+++++||+.||||+.. .++..++..+..+.++.++ +++.++|+|++|+|++++.+++++.
T Consensus 139 ~~~~~~~----~~~~ilR~~~v~G~~~~--~~~~~~~~~~~~~~~~~~~-----~~~~~~~i~v~Dva~~~~~~~~~~~- 206 (287)
T 3sc6_A 139 QFVKELH----NKYFIVRTSWLYGKYGN--NFVKTMIRLGKEREEISVV-----ADQIGSPTYVADLNVMINKLIHTSL- 206 (287)
T ss_dssp HHHHHHC----SSEEEEEECSEECSSSC--CHHHHHHHHHTTCSEEEEE-----CSCEECCEEHHHHHHHHHHHHTSCC-
T ss_pred HHHHHhC----CCcEEEeeeeecCCCCC--cHHHHHHHHHHcCCCeEee-----cCcccCceEHHHHHHHHHHHHhCCC-
Confidence 9999864 47899999999999754 3677888888889988887 4589999999999999999998763
Q ss_pred CCCCCCceEEEeCCCCcccHHHHHHHHHHHhCCCccceeecC----CCCCCCCcccCChHHHHHhcCCCccCcHHHHHHH
Q 012176 359 KRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRM----PRNGDVPYTHANVSLAYKDFGYKPTTDLAAGLRK 434 (469)
Q Consensus 359 ~~~~~~~~iyni~~~~~vt~~el~~~i~~~~g~~~~~~~~~~----~~~~~~~~~~~d~~ka~~~LG~~p~~~l~~~l~~ 434 (469)
+++||+++++++|+.|+++.+.+.+|.+..+...+. ....+.....+|++|++ +|||+|.++++++|++
T Consensus 207 ------~~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~-~lg~~p~~~~~~~l~~ 279 (287)
T 3sc6_A 207 ------YGTYHVSNTGSCSWFEFAKKIFSYANMKVNVLPVSTEEFGAAAARPKYSIFQHNMLR-LNGFLQMPSWEEGLER 279 (287)
T ss_dssp ------CEEEECCCBSCEEHHHHHHHHHHHHTCCCEEEEECHHHHCCSSCCCSBCCBCCHHHH-HTTCCCCCBHHHHHHH
T ss_pred ------CCeEEEcCCCcccHHHHHHHHHHHcCCCcceeeeehhhcCcccCCCCcccccHHHHH-hhCCCCCccHHHHHHH
Confidence 489999999999999999999999999876665542 23345667789999999 8999999999999999
Q ss_pred HHHHHHH
Q 012176 435 FVKWYVS 441 (469)
Q Consensus 435 ~v~~~~~ 441 (469)
+++|+++
T Consensus 280 ~~~~~~~ 286 (287)
T 3sc6_A 280 FFIETKS 286 (287)
T ss_dssp HHHHTC-
T ss_pred HHHHHhc
Confidence 9999854
|
| >1n7h_A GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, short-chain dehydrogenase/reductase, LYA; HET: NDP GDP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1n7g_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-42 Score=352.82 Aligned_cols=316 Identities=22% Similarity=0.220 Sum_probs=255.5
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCCh-hHHHHHHHh-hccC-CeEEEEecCCCHHHHHHhhccCCcc
Q 012176 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDP-SLKRARQKL-LQKH-QVFIVEGDLNDAPLLTKLFDVVPFT 195 (469)
Q Consensus 119 ~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~-~~~~~~~~~-~~~~-~v~~v~~Dl~d~~~l~~~~~~~~~d 195 (469)
|+||||||+||||++|+++|+++|++|++++|....... .+....... .... +++++.+|++|.+.+.++++++++|
T Consensus 29 k~vlVtGatG~IG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 108 (381)
T 1n7h_A 29 KIALITGITGQDGSYLTEFLLGKGYEVHGLIRRSSNFNTQRINHIYIDPHNVNKALMKLHYADLTDASSLRRWIDVIKPD 108 (381)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCTTTTTTC--------CCEEEEECCTTCHHHHHHHHHHHCCS
T ss_pred CeEEEEcCCchHHHHHHHHHHHCCCEEEEEecCCccccchhhhhhhhccccccccceEEEECCCCCHHHHHHHHHhcCCC
Confidence 689999999999999999999999999999997653110 000000000 0112 7899999999999999999987789
Q ss_pred EEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCC----CeEEEEcCccccCCCCCCCCCCCCCCCCCCChHH
Q 012176 196 HVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQ----PSIVWASSSSVYGLNTQVPFSESHRTDQPASLYA 271 (469)
Q Consensus 196 ~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~----~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y~ 271 (469)
+||||||......+..+++..+++|+.++.+++++|++.+++ ++|||+||.++||.... +++|+++. .|.+.|+
T Consensus 109 ~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~l~~a~~~~~~~~~~~~~~v~~SS~~vyg~~~~-~~~E~~~~-~~~~~Y~ 186 (381)
T 1n7h_A 109 EVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRSHTIDSGRTVKYYQAGSSEMFGSTPP-PQSETTPF-HPRSPYA 186 (381)
T ss_dssp EEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHHHHHHCCCCEEEEEEEGGGGTTSCS-SBCTTSCC-CCCSHHH
T ss_pred EEEECCcccCccccccCHHHHHHHHHHHHHHHHHHHHHhCCccCCccEEEEeCcHHHhCCCCC-CCCCCCCC-CCCCchH
Confidence 999999987665556788899999999999999999887642 39999999999998766 88998876 7889999
Q ss_pred HHHHHHHHHHHHHHHHhCCcEEEEeecceecCCCCCCCh---HHHHHHHHHcCCceE-EEeeCCCCcceEecccHHHHHH
Q 012176 272 ATKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPDMA---YFFFTKDILQGKTID-VYKTQDDREVARDFTYIDDVVK 347 (469)
Q Consensus 272 ~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~Gp~~~~~~~---~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~v~v~Dva~ 347 (469)
.+|.++|.+++.++.+++++++++|++++|||+...... +..++..+..|.... .+ +++++.++|+|++|+|+
T Consensus 187 ~sK~~~E~~~~~~~~~~~~~~~~~r~~~~~gp~~~~~~~~~~~~~~~~~~~~g~~~~~~~---g~~~~~~~~v~v~Dva~ 263 (381)
T 1n7h_A 187 ASKCAAHWYTVNYREAYGLFACNGILFNHESPRRGENFVTRKITRALGRIKVGLQTKLFL---GNLQASRDWGFAGDYVE 263 (381)
T ss_dssp HHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTSCTTSHHHHHHHHHHHHHHTSCCCEEE---SCTTCEEECEEHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCcEEEEEeCceeCCCCCCcchhHHHHHHHHHHHcCCCCeEEe---CCCCceeeeEEHHHHHH
Confidence 999999999999999899999999999999998655432 344556666676443 34 56789999999999999
Q ss_pred HHHHHhccCCCCCCCCCceEEEeCCCCcccHHHHHHHHHHHhCCCcc--ceeecC-CCCCCCCcccCChHHHHHhcCCCc
Q 012176 348 GCVGATGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAK--KHVIRM-PRNGDVPYTHANVSLAYKDFGYKP 424 (469)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~iyni~~~~~vt~~el~~~i~~~~g~~~~--~~~~~~-~~~~~~~~~~~d~~ka~~~LG~~p 424 (469)
+++.+++++. +++||+++++++|+.|+++.+.+.+|.+.. ....+. .+..+.....+|++|++++|||+|
T Consensus 264 a~~~~~~~~~-------~~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p 336 (381)
T 1n7h_A 264 AMWLMLQQEK-------PDDYVVATEEGHTVEEFLDVSFGYLGLNWKDYVEIDQRYFRPAEVDNLQGDASKAKEVLGWKP 336 (381)
T ss_dssp HHHHHHTSSS-------CCEEEECCSCEEEHHHHHHHHHHHTTCCGGGTEEECGGGSCSSCCCBCCBCCHHHHHHHCCCC
T ss_pred HHHHHHhCCC-------CCeEEeeCCCCCcHHHHHHHHHHHcCCCcccccccCcccCCccccccccCCHHHHHHhcCCcc
Confidence 9999998652 289999999999999999999999998643 111111 133455567789999999999999
Q ss_pred cCcHHHHHHHHHHHHHHHcCCC
Q 012176 425 TTDLAAGLRKFVKWYVSYYGIQ 446 (469)
Q Consensus 425 ~~~l~~~l~~~v~~~~~~~~~~ 446 (469)
+++++++|+++++||.+..+..
T Consensus 337 ~~~l~e~l~~~~~~~~~~~~~~ 358 (381)
T 1n7h_A 337 QVGFEKLVKMMVDEDLELAKRE 358 (381)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhhcccc
Confidence 9999999999999999987643
|
| >2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate metabolism, stress response; HET: NAP ADP BMA; 2.36A {Escherichia coli} PDB: 2x86_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-42 Score=345.46 Aligned_cols=300 Identities=21% Similarity=0.338 Sum_probs=247.4
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCC-CcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccC--
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRG-DGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV-- 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~-- 192 (469)
.++|+||||||+||||++|+++|+++| ++|++++|...... ...+ .++. +.+|++|.+.+++++++.
T Consensus 44 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~-------~~~~--~~~~-~~~d~~~~~~~~~~~~~~~~ 113 (357)
T 2x6t_A 44 IEGRMIIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTK-------FVNL--VDLN-IADYMDKEDFLIQIMAGEEF 113 (357)
T ss_dssp ----CEEEETTTSHHHHHHHHHHHHTTCCCEEEEECCSSGGG-------GGGT--TTSC-CSEEEEHHHHHHHHHTTCCC
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCcEEEEEecCCCcch-------hhcc--cCce-EeeecCcHHHHHHHHhhccc
Confidence 456899999999999999999999999 99999999654210 0011 1333 779999999999998752
Q ss_pred -CccEEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcCccccCCCCCCCCCCCCCCCCCCChHH
Q 012176 193 -PFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYA 271 (469)
Q Consensus 193 -~~d~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y~ 271 (469)
++|+|||+||.... ...+++.++++|+.++.+++++|++.++ +|||+||.++||.....+++|+++. .|.+.|+
T Consensus 114 ~~~d~Vih~A~~~~~--~~~~~~~~~~~n~~~~~~ll~a~~~~~~--r~V~~SS~~v~g~~~~~~~~E~~~~-~p~~~Y~ 188 (357)
T 2x6t_A 114 GDVEAIFHEGACSST--TEWDGKYMMDNNYQYSKELLHYCLEREI--PFLYASSAATYGGRTSDFIESREYE-KPLNVFG 188 (357)
T ss_dssp SSCCEEEECCSCCCT--TCCCHHHHHHHTHHHHHHHHHHHHHHTC--CEEEEEEGGGGCSCSSCCCSSGGGC-CCSSHHH
T ss_pred CCCCEEEECCcccCC--ccCCHHHHHHHHHHHHHHHHHHHHHcCC--eEEEEcchHHhCCCCCCCcCCcCCC-CCCChhH
Confidence 46999999997543 4567888999999999999999999886 8999999999998777788998876 7889999
Q ss_pred HHHHHHHHHHHHHHHHhCCcEEEEeecceecCCCCC----CChHHHHHHHHHcCCceEEEeeCCCCcc-eEecccHHHHH
Q 012176 272 ATKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRP----DMAYFFFTKDILQGKTIDVYKTQDDREV-ARDFTYIDDVV 346 (469)
Q Consensus 272 ~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~Gp~~~~----~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~v~v~Dva 346 (469)
.+|.++|.+++.++.++|+++++|||+.||||+... ...+..++..+..+.++.++ +++++ .++|+|++|+|
T Consensus 189 ~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~i~v~Dva 265 (357)
T 2x6t_A 189 YSKFLFDEYVRQILPEANSQIVGFRYFNVYGPREGHKGSMASVAFHLNTQLNNGESPKLF---EGSENFKRDFVYVGDVA 265 (357)
T ss_dssp HHHHHHHHHHHHHGGGCSSCEEEEEECEEESSSCTTCGGGSCHHHHHHHHHHTTCCCEEE---TTGGGCEECEEEHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEecCeEECCCCCCCcccchHHHHHHHHHHcCCCcEEe---CCCCcceEccEEHHHHH
Confidence 999999999999998889999999999999997653 24667788888999988877 66788 99999999999
Q ss_pred HHHHHHhccCCCCCCCCCceEEEeCCCCcccHHHHHHHHHHHhCCCccceeecCCCC---CCCCcccCChHHHHHhcCC-
Q 012176 347 KGCVGATGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRN---GDVPYTHANVSLAYKDFGY- 422 (469)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~iyni~~~~~vt~~el~~~i~~~~g~~~~~~~~~~~~~---~~~~~~~~d~~ka~~~LG~- 422 (469)
++++.+++++. +++||+++++++|+.|+++.+.+.+|.+ .+...+.+.. .......+|++|+++ |||
T Consensus 266 ~ai~~~~~~~~-------~~~~~i~~~~~~s~~e~~~~i~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~k~~~-lG~~ 336 (357)
T 2x6t_A 266 DVNLWFLENGV-------SGIFNLGTGRAESFQAVADATLAYHKKG-QIEYIPFPDKLKGRYQAFTQADLTNLRA-AGYD 336 (357)
T ss_dssp HHHHHHHHHCC-------CEEEEESCSCCEEHHHHHHHHHHHHTCC-CCEEECCCGGGTTSCCSBCCCCCHHHHH-TTCC
T ss_pred HHHHHHHhcCC-------CCeEEecCCCcccHHHHHHHHHHHcCCC-CceecCCCcccccccccccccCHHHHHH-cCCC
Confidence 99999998762 4999999999999999999999999987 4444454431 123446788999976 999
Q ss_pred CccCcHHHHHHHHHHHHHHH
Q 012176 423 KPTTDLAAGLRKFVKWYVSY 442 (469)
Q Consensus 423 ~p~~~l~~~l~~~v~~~~~~ 442 (469)
.|.++++++|+++++||++.
T Consensus 337 ~~~~~l~e~l~~~~~~~~~~ 356 (357)
T 2x6t_A 337 KPFKTVAEGVTEYMAWLNRD 356 (357)
T ss_dssp CCCCCHHHHHHHHHHHHC--
T ss_pred CCCCCHHHHHHHHHHHHhhc
Confidence 78899999999999999653
|
| >2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-42 Score=341.85 Aligned_cols=293 Identities=18% Similarity=0.159 Sum_probs=236.0
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCccE
Q 012176 117 NGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTH 196 (469)
Q Consensus 117 ~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~d~ 196 (469)
.+|+||||||+||||++|+++|+++|++|++++|....... +...+++++.+|++|.+.+.++++++ |+
T Consensus 12 ~~M~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~---------l~~~~~~~~~~Dl~d~~~~~~~~~~~--d~ 80 (342)
T 2x4g_A 12 AHVKYAVLGATGLLGHHAARAIRAAGHDLVLIHRPSSQIQR---------LAYLEPECRVAEMLDHAGLERALRGL--DG 80 (342)
T ss_dssp CCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECTTSCGGG---------GGGGCCEEEECCTTCHHHHHHHTTTC--SE
T ss_pred cCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEecChHhhhh---------hccCCeEEEEecCCCHHHHHHHHcCC--CE
Confidence 45799999999999999999999999999999996543211 12237899999999999999999976 99
Q ss_pred EEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcCccccCCCCC--CCCCCCCCCCCC----CChH
Q 012176 197 VLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQ--VPFSESHRTDQP----ASLY 270 (469)
Q Consensus 197 Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS~~vyg~~~~--~~~~E~~~~~~p----~~~Y 270 (469)
|||+||... ....+++.++++|+.++.+++++|++.+++ +|||+||.++|+.... .+ +|+++. .| .+.|
T Consensus 81 vih~a~~~~--~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~-~~v~~SS~~~~~~~~~~~~~-~E~~~~-~p~~~~~~~Y 155 (342)
T 2x4g_A 81 VIFSAGYYP--SRPRRWQEEVASALGQTNPFYAACLQARVP-RILYVGSAYAMPRHPQGLPG-HEGLFY-DSLPSGKSSY 155 (342)
T ss_dssp EEEC--------------CHHHHHHHHHHHHHHHHHHHTCS-CEEEECCGGGSCCCTTSSCB-CTTCCC-SSCCTTSCHH
T ss_pred EEECCccCc--CCCCCHHHHHHHHHHHHHHHHHHHHHcCCC-eEEEECCHHhhCcCCCCCCC-CCCCCC-CccccccChH
Confidence 999999743 234567789999999999999999999876 9999999999987654 44 777766 66 8899
Q ss_pred HHHHHHHHHHHHHHHHHhCCcEEEEeecceecCCC-CCCChHHHHHHHHHcCCceEEEeeCCCCcceEecccHHHHHHHH
Q 012176 271 AATKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWG-RPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGC 349 (469)
Q Consensus 271 ~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~Gp~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~~~ 349 (469)
+.+|.++|.+++.++.. |+++++|||+.||||+. .+. +..++..+..|.++.+ +++.++|+|++|+|+++
T Consensus 156 ~~sK~~~e~~~~~~~~~-g~~~~ilrp~~v~g~~~~~~~--~~~~~~~~~~~~~~~~------~~~~~~~i~v~Dva~~~ 226 (342)
T 2x4g_A 156 VLCKWALDEQAREQARN-GLPVVIGIPGMVLGELDIGPT--TGRVITAIGNGEMTHY------VAGQRNVIDAAEAGRGL 226 (342)
T ss_dssp HHHHHHHHHHHHHHHHT-TCCEEEEEECEEECSCCSSCS--TTHHHHHHHTTCCCEE------ECCEEEEEEHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhc-CCcEEEEeCCceECCCCcccc--HHHHHHHHHcCCCccc------cCCCcceeeHHHHHHHH
Confidence 99999999999999877 99999999999999977 432 4567777888877654 36789999999999999
Q ss_pred HHHhccCCCCCCCCCceEEEeCCCCcccHHHHHHHHHHHhCCCccceeecCCC--------------CC-------C---
Q 012176 350 VGATGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPR--------------NG-------D--- 405 (469)
Q Consensus 350 ~~~~~~~~~~~~~~~~~iyni~~~~~vt~~el~~~i~~~~g~~~~~~~~~~~~--------------~~-------~--- 405 (469)
+.+++++. . +++||+++++ +|+.|+++.+.+.+|.+..+ ..|... .+ +
T Consensus 227 ~~~~~~~~-----~-g~~~~v~~~~-~s~~e~~~~i~~~~g~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (342)
T 2x4g_A 227 LMALERGR-----I-GERYLLTGHN-LEMADLTRRIAELLGQPAPQ-PMSMAMARALATLGRLRYRVSGQLPLLDETAIE 298 (342)
T ss_dssp HHHHHHSC-----T-TCEEEECCEE-EEHHHHHHHHHHHHTCCCCE-EECHHHHHHHHHHHHC----------------C
T ss_pred HHHHhCCC-----C-CceEEEcCCc-ccHHHHHHHHHHHhCCCCCC-cCCHHHHHHHHHHHHHHHHhhCCCCCCCHHHHH
Confidence 99998763 2 5899999999 99999999999999988765 443210 00 1
Q ss_pred --CCcccCChHHHHHhcCC-CccCcHHHHHHHHHHHHHHHc
Q 012176 406 --VPYTHANVSLAYKDFGY-KPTTDLAAGLRKFVKWYVSYY 443 (469)
Q Consensus 406 --~~~~~~d~~ka~~~LG~-~p~~~l~~~l~~~v~~~~~~~ 443 (469)
.....+|++|++++||| +| ++++++|+++++||+++.
T Consensus 299 ~~~~~~~~d~~k~~~~lG~~~p-~~~~~~l~~~~~~~~~~g 338 (342)
T 2x4g_A 299 VMAGGQFLDGRKAREELGFFST-TALDDTLLRAIDWFRDNG 338 (342)
T ss_dssp CTTCCCCBCCHHHHHHHCCCCC-SCHHHHHHHHHHHHHHTT
T ss_pred HHhcCcccChHHHHHhCCCCCC-CCHHHHHHHHHHHHHHcC
Confidence 23567899999999999 99 799999999999997653
|
| >1n2s_A DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold, sugar-nucleotide-binding domain; HET: NAD; 2.00A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1kc1_A* 1kc3_A* 1kbz_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-42 Score=339.08 Aligned_cols=286 Identities=16% Similarity=0.155 Sum_probs=241.5
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCccEEE
Q 012176 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTHVL 198 (469)
Q Consensus 119 ~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~d~Vi 198 (469)
|+||||||+||||++|+++|+ +|++|++++|... .+.+|++|.+.+.+++++.++|+||
T Consensus 1 m~ilVtGatG~iG~~l~~~L~-~g~~V~~~~r~~~--------------------~~~~D~~d~~~~~~~~~~~~~d~vi 59 (299)
T 1n2s_A 1 MNILLFGKTGQVGWELQRSLA-PVGNLIALDVHSK--------------------EFCGDFSNPKGVAETVRKLRPDVIV 59 (299)
T ss_dssp CEEEEECTTSHHHHHHHHHTT-TTSEEEEECTTCS--------------------SSCCCTTCHHHHHHHHHHHCCSEEE
T ss_pred CeEEEECCCCHHHHHHHHHhh-cCCeEEEeccccc--------------------cccccCCCHHHHHHHHHhcCCCEEE
Confidence 689999999999999999999 8999999998431 3568999999999999985569999
Q ss_pred EcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcCccccCCCCCCCCCCCCCCCCCCChHHHHHHHHH
Q 012176 199 HLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGE 278 (469)
Q Consensus 199 h~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y~~sK~~~E 278 (469)
|+||.........+++..+++|+.++.+++++|++.++ +|||+||.++|+.....+++|+++. .|.+.|+.+|.++|
T Consensus 60 h~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~--~~v~~SS~~vy~~~~~~~~~E~~~~-~p~~~Y~~sK~~~E 136 (299)
T 1n2s_A 60 NAAAHTAVDKAESEPELAQLLNATSVEAIAKAANETGA--WVVHYSTDYVFPGTGDIPWQETDAT-SPLNVYGKTKLAGE 136 (299)
T ss_dssp ECCCCCCHHHHTTCHHHHHHHHTHHHHHHHHHHTTTTC--EEEEEEEGGGSCCCTTCCBCTTSCC-CCSSHHHHHHHHHH
T ss_pred ECcccCCHhhhhcCHHHHHHHHHHHHHHHHHHHHHcCC--cEEEEecccEEeCCCCCCCCCCCCC-CCccHHHHHHHHHH
Confidence 99998766666788899999999999999999999885 7999999999998877789999877 78899999999999
Q ss_pred HHHHHHHHHhCCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceEecccHHHHHHHHHHHhccCCC
Q 012176 279 EIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGATGSGGK 358 (469)
Q Consensus 279 ~~~~~~~~~~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~~~~~~~~~~~~ 358 (469)
++++.++ .+++++||++||||+.. .++..++..+..+.++.+. +++.++|+|++|+|++++.+++++..
T Consensus 137 ~~~~~~~----~~~~ilRp~~v~G~~~~--~~~~~~~~~~~~~~~~~~~-----~~~~~~~i~v~Dva~~~~~~~~~~~~ 205 (299)
T 1n2s_A 137 KALQDNC----PKHLIFRTSWVYAGKGN--NFAKTMLRLAKERQTLSVI-----NDQYGAPTGAELLADCTAHAIRVALN 205 (299)
T ss_dssp HHHHHHC----SSEEEEEECSEECSSSC--CHHHHHHHHHHHCSEEEEE-----CSCEECCEEHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhC----CCeEEEeeeeecCCCcC--cHHHHHHHHHhcCCCEEee-----cCcccCCeeHHHHHHHHHHHHHHhcc
Confidence 9998864 48999999999999764 3667788888888888777 45889999999999999999876410
Q ss_pred CCCCCCceEEEeCCCCcccHHHHHHHHHHHhCCCc------cceeecCC----CCCCCCcccCChHHHHHhcCCCccCcH
Q 012176 359 KRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKA------KKHVIRMP----RNGDVPYTHANVSLAYKDFGYKPTTDL 428 (469)
Q Consensus 359 ~~~~~~~~iyni~~~~~vt~~el~~~i~~~~g~~~------~~~~~~~~----~~~~~~~~~~d~~ka~~~LG~~p~~~l 428 (469)
. ...+++||+++++++|+.|+++.+.+.+|.+. .+...+.. ...+.....+|++|++++|||+|+ ++
T Consensus 206 ~--~~~~~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~-~~ 282 (299)
T 1n2s_A 206 K--PEVAGLYHLVAGGTTTWHDYAALVFDEARKAGITLALTELNAVPTSAYPTPASRPGNSRLNTEKFQRNFDLILP-QW 282 (299)
T ss_dssp C--GGGCEEEECCCBSCEEHHHHHHHHHHHHHHHTCCCCCCEEEEECSTTSCCSSCCCSBCCBCCHHHHHHHTCCCC-BH
T ss_pred c--cccCceEEEeCCCCCCHHHHHHHHHHHhCCCccccccccccccccccccCcCCCCCceeeeHHHHHHhcCCCCC-CH
Confidence 0 00249999999999999999999999998762 33333321 123345678999999999999998 89
Q ss_pred HHHHHHHHHHHHHH
Q 012176 429 AAGLRKFVKWYVSY 442 (469)
Q Consensus 429 ~~~l~~~v~~~~~~ 442 (469)
+++|+++++||++.
T Consensus 283 ~~~l~~~~~~~~~~ 296 (299)
T 1n2s_A 283 ELGVKRMLTEMFTT 296 (299)
T ss_dssp HHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999999643
|
| >2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1, oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium frigidimaris} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-42 Score=338.38 Aligned_cols=301 Identities=20% Similarity=0.269 Sum_probs=239.1
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHC--CCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCcc
Q 012176 118 GMTVLVTGAAGFVGSHCSLALKKR--GDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFT 195 (469)
Q Consensus 118 ~~~VlVtGatG~IG~~l~~~L~~~--G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~d 195 (469)
+|+||||||+||||++|+++|+++ |++|++++|..... .. . .+++++.+|++|.+.++++++..++|
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~--~~----~-----~~~~~~~~D~~d~~~~~~~~~~~~~d 70 (312)
T 2yy7_A 2 NPKILIIGACGQIGTELTQKLRKLYGTENVIASDIRKLNT--DV----V-----NSGPFEVVNALDFNQIEHLVEVHKIT 70 (312)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHHHHCGGGEEEEESCCCSC--HH----H-----HSSCEEECCTTCHHHHHHHHHHTTCC
T ss_pred CceEEEECCccHHHHHHHHHHHHhCCCCEEEEEcCCCccc--cc----c-----CCCceEEecCCCHHHHHHHHhhcCCC
Confidence 478999999999999999999999 89999999976531 10 0 15788999999999999999855669
Q ss_pred EEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcCccccCCCCC-CCCCCCCCCCCCCChHHHHH
Q 012176 196 HVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQ-VPFSESHRTDQPASLYAATK 274 (469)
Q Consensus 196 ~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS~~vyg~~~~-~~~~E~~~~~~p~~~Y~~sK 274 (469)
+|||+||.... ....+++..+++|+.++.+++++|++.+++ +|||+||.++|+.... .+.+|+++. .|.+.|+.+|
T Consensus 71 ~vih~a~~~~~-~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~v~~SS~~~~~~~~~~~~~~e~~~~-~~~~~Y~~sK 147 (312)
T 2yy7_A 71 DIYLMAALLSA-TAEKNPAFAWDLNMNSLFHVLNLAKAKKIK-KIFWPSSIAVFGPTTPKENTPQYTIM-EPSTVYGISK 147 (312)
T ss_dssp EEEECCCCCHH-HHHHCHHHHHHHHHHHHHHHHHHHHTTSCS-EEECCEEGGGCCTTSCSSSBCSSCBC-CCCSHHHHHH
T ss_pred EEEECCccCCC-chhhChHHHHHHHHHHHHHHHHHHHHcCCC-EEEEeccHHHhCCCCCCCCccccCcC-CCCchhHHHH
Confidence 99999997443 234678889999999999999999998876 9999999999987543 466676665 7889999999
Q ss_pred HHHHHHHHHHHHHhCCcEEEEeecceecCCCCCC-----ChHHHHHHHHHcCCceEEEeeCCCCcceEecccHHHHHHHH
Q 012176 275 KAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPD-----MAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGC 349 (469)
Q Consensus 275 ~~~E~~~~~~~~~~gi~~~ilRp~~v~Gp~~~~~-----~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~~~ 349 (469)
.++|.+++.++.++|++++++||+.||||+..+. .....+.+ ...++++.++ +++++.++|+|++|+|+++
T Consensus 148 ~~~e~~~~~~~~~~~~~~~~lrp~~v~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~---~~~~~~~~~i~v~Dva~a~ 223 (312)
T 2yy7_A 148 QAGERWCEYYHNIYGVDVRSIRYPGLISWSTPPGGGTTDYAVDIFYK-AIADKKYECF---LSSETKMPMMYMDDAIDAT 223 (312)
T ss_dssp HHHHHHHHHHHHHHCCEEECEEECEEECSSSCCCSCTTTHHHHHHHH-HHHTSEEEES---SCTTCCEEEEEHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCcEEEEeCCeEecCCCCCCCchhhhHHHHHHH-HHcCCCeEEe---cCCCceeeeeeHHHHHHHH
Confidence 9999999999988899999999999999764332 13334444 3445555555 5678899999999999999
Q ss_pred HHHhccCCCCCCCCCceEEEeCCCCcccHHHHHHHHHHHhCCCccceeecCCCC--CCCCcccCChHHHHHhcCCCccCc
Q 012176 350 VGATGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRN--GDVPYTHANVSLAYKDFGYKPTTD 427 (469)
Q Consensus 350 ~~~~~~~~~~~~~~~~~iyni~~~~~vt~~el~~~i~~~~g~~~~~~~~~~~~~--~~~~~~~~d~~ka~~~LG~~p~~~ 427 (469)
+.+++++... ...+++||+++ +.+|+.|+++.+.+.+|. ..+...|.... .......+|++|++++|||+|+++
T Consensus 224 ~~~~~~~~~~--~~~~~~~ni~~-~~~s~~e~~~~i~~~~~~-~~i~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~ 299 (312)
T 2yy7_A 224 INIMKAPVEK--IKIHSSYNLAA-MSFTPTEIANEIKKHIPE-FTITYEPDFRQKIADSWPASIDDSQAREDWDWKHTFD 299 (312)
T ss_dssp HHHHHSCGGG--CCCSSCEECCS-EEECHHHHHHHHHTTCTT-CEEEECCCTHHHHHTTSCSSBCCHHHHHHHCCCCCCC
T ss_pred HHHHhCcccc--cccCceEEeCC-CccCHHHHHHHHHHHCCC-CceEeccCccccccccccccCCHHHHHHHcCCCCCCC
Confidence 9999876310 01248999997 789999999999999983 22332221100 011234689999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 012176 428 LAAGLRKFVKWYV 440 (469)
Q Consensus 428 l~~~l~~~v~~~~ 440 (469)
++++|+++++||+
T Consensus 300 l~~~l~~~~~~~k 312 (312)
T 2yy7_A 300 LESMTKDMIEHLS 312 (312)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhC
Confidence 9999999999983
|
| >1eq2_A ADP-L-glycero-D-mannoheptose 6-epimerase; N-terminal domain rossmann fold, C-terminal mixed alpha/beta domain; HET: NAP ADQ; 2.00A {Escherichia coli} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-42 Score=338.08 Aligned_cols=296 Identities=21% Similarity=0.351 Sum_probs=225.9
Q ss_pred EEEEEcCCChhHHHHHHHHHHCC-CcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccC---Ccc
Q 012176 120 TVLVTGAAGFVGSHCSLALKKRG-DGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV---PFT 195 (469)
Q Consensus 120 ~VlVtGatG~IG~~l~~~L~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~---~~d 195 (469)
+||||||+||||++|+++|+++| ++|++++|...... ... +. ++. +.+|++|.+.+++++++. ++|
T Consensus 1 ~vlVtGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~--~~~-----~~--~~~-~~~d~~~~~~~~~~~~~~~~~~~d 70 (310)
T 1eq2_A 1 MIIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTK--FVN-----LV--DLN-IADYMDKEDFLIQIMAGEEFGDVE 70 (310)
T ss_dssp CEEEETTTSHHHHHHHHHHHTTTCCCEEEEECCSSGGG--GHH-----HH--TSC-CSEEEEHHHHHHHHHTTCCCSSCC
T ss_pred CEEEEcCccHHHHHHHHHHHHCCCcEEEEEccCCCCch--hhh-----cC--cce-eccccccHHHHHHHHhccccCCCc
Confidence 48999999999999999999999 99999999654210 111 11 233 779999999999999862 469
Q ss_pred EEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcCccccCCCCCCCCCCCCCCCCCCChHHHHHH
Q 012176 196 HVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKK 275 (469)
Q Consensus 196 ~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y~~sK~ 275 (469)
+|||+||.... ...+++.++++|+.++.+++++|++.++ +|||+||.++||.....+++|+++. .|.+.|+.+|.
T Consensus 71 ~vi~~a~~~~~--~~~~~~~~~~~n~~~~~~l~~a~~~~~~--~~v~~SS~~v~g~~~~~~~~E~~~~-~p~~~Y~~sK~ 145 (310)
T 1eq2_A 71 AIFHEGACSST--TEWDGKYMMDNNYQYSKELLHYCLEREI--PFLYASSAATYGGRTSDFIESREYE-KPLNVYGYSKF 145 (310)
T ss_dssp EEEECCSCCCT--TCCCHHHHHHHTHHHHHHHHHHHHHHTC--CEEEEEEGGGGTTCCSCBCSSGGGC-CCSSHHHHHHH
T ss_pred EEEECcccccC--cccCHHHHHHHHHHHHHHHHHHHHHcCC--eEEEEeeHHHhCCCCCCCCCCCCCC-CCCChhHHHHH
Confidence 99999997543 4567888999999999999999999886 8999999999998776688888876 78899999999
Q ss_pred HHHHHHHHHHHHhCCcEEEEeecceecCCCCC----CChHHHHHHHHHcCCceEEEeeCCCCcc-eEecccHHHHHHHHH
Q 012176 276 AGEEIAHTYNHIYGLALTGLRFFTVYGPWGRP----DMAYFFFTKDILQGKTIDVYKTQDDREV-ARDFTYIDDVVKGCV 350 (469)
Q Consensus 276 ~~E~~~~~~~~~~gi~~~ilRp~~v~Gp~~~~----~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~v~v~Dva~~~~ 350 (469)
++|.+++.++.++|++++++||+.||||+... ...+..+++.+..++++.++ +++++ .++|+|++|+|++++
T Consensus 146 ~~e~~~~~~~~~~g~~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~g~~~~~~~i~v~Dva~~~~ 222 (310)
T 1eq2_A 146 LFDEYVRQILPEANSQIVGFRYFNVYGPREGHKGSMASVAFHLNTQLNNGESPKLF---EGSENFKRDFVYVGDVADVNL 222 (310)
T ss_dssp HHHHHHHHHGGGCSSCEEEEEECEEESSSCGGGGGGSCHHHHHHHHHHC----------------CBCEEEHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCcEECcCCCCCCccchHHHHHHHHHHcCCCcEEe---cCCCcceEccEEHHHHHHHHH
Confidence 99999999998889999999999999997652 34667888888999888777 56778 899999999999999
Q ss_pred HHhccCCCCCCCCCceEEEeCCCCcccHHHHHHHHHHHhCCCccceeecCCCC---CCCCcccCChHHHHHhcCC-CccC
Q 012176 351 GATGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRN---GDVPYTHANVSLAYKDFGY-KPTT 426 (469)
Q Consensus 351 ~~~~~~~~~~~~~~~~iyni~~~~~vt~~el~~~i~~~~g~~~~~~~~~~~~~---~~~~~~~~d~~ka~~~LG~-~p~~ 426 (469)
.+++++. +++||+++++++|+.|+++.+.+.+|.+ .+...+.+.. .......+|++|+++ ||| +|.+
T Consensus 223 ~~~~~~~-------~~~~~i~~~~~~s~~e~~~~i~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-lG~~~~~~ 293 (310)
T 1eq2_A 223 WFLENGV-------SGIFNLGTGRAESFQAVADATLAYHKKG-QIEYIPFPDKLKGRYQAFTQADLTNLRA-AGYDKPFK 293 (310)
T ss_dssp HHHHHCC-------CEEEEESCSCCBCHHHHHHHC----------------------CCCSCCBCCHHHHH-TTCCCCCC
T ss_pred HHHhcCC-------CCeEEEeCCCccCHHHHHHHHHHHcCCC-CceeCCCChhhhcccccccccchHHHHh-cCCCCCCC
Confidence 9998762 4999999999999999999999999987 3333443321 123346788899875 999 7889
Q ss_pred cHHHHHHHHHHHHHHH
Q 012176 427 DLAAGLRKFVKWYVSY 442 (469)
Q Consensus 427 ~l~~~l~~~v~~~~~~ 442 (469)
+++++|+++++||++.
T Consensus 294 ~l~~~l~~~~~~~~~~ 309 (310)
T 1eq2_A 294 TVAEGVTEYMAWLNRD 309 (310)
T ss_dssp CHHHHHHHHHHHTC--
T ss_pred CHHHHHHHHHHHHHhc
Confidence 9999999999998653
|
| >1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; structural joint center for structural genomics, JCSG, protein structu initiative; HET: NAI UNL; 2.05A {Clostridium acetobutylicum} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-41 Score=331.43 Aligned_cols=278 Identities=18% Similarity=0.165 Sum_probs=239.0
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCcc
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFT 195 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~d 195 (469)
...|+||||||+||||++|+++|+++|++|++++|. .+|++|.+.+.+++++.++|
T Consensus 10 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~------------------------~~Dl~d~~~~~~~~~~~~~d 65 (292)
T 1vl0_A 10 HHHMKILITGANGQLGREIQKQLKGKNVEVIPTDVQ------------------------DLDITNVLAVNKFFNEKKPN 65 (292)
T ss_dssp --CEEEEEESTTSHHHHHHHHHHTTSSEEEEEECTT------------------------TCCTTCHHHHHHHHHHHCCS
T ss_pred cccceEEEECCCChHHHHHHHHHHhCCCeEEeccCc------------------------cCCCCCHHHHHHHHHhcCCC
Confidence 345899999999999999999999999999999983 27999999999999854559
Q ss_pred EEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcCccccCCCCCCCCCCCCCCCCCCChHHHHHH
Q 012176 196 HVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKK 275 (469)
Q Consensus 196 ~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y~~sK~ 275 (469)
+||||||.........+++..+++|+.++.+++++|++.+. +|||+||.++|+.....+++|+++. .|.+.|+.+|.
T Consensus 66 ~vih~A~~~~~~~~~~~~~~~~~~nv~~~~~l~~a~~~~~~--~iv~~SS~~v~~~~~~~~~~E~~~~-~~~~~Y~~sK~ 142 (292)
T 1vl0_A 66 VVINCAAHTAVDKCEEQYDLAYKINAIGPKNLAAAAYSVGA--EIVQISTDYVFDGEAKEPITEFDEV-NPQSAYGKTKL 142 (292)
T ss_dssp EEEECCCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHTC--EEEEEEEGGGSCSCCSSCBCTTSCC-CCCSHHHHHHH
T ss_pred EEEECCccCCHHHHhcCHHHHHHHHHHHHHHHHHHHHHcCC--eEEEechHHeECCCCCCCCCCCCCC-CCccHHHHHHH
Confidence 99999998766556678889999999999999999999885 8999999999998776789998876 78899999999
Q ss_pred HHHHHHHHHHHHhCCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceEecccHHHHHHHHHHHhcc
Q 012176 276 AGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGATGS 355 (469)
Q Consensus 276 ~~E~~~~~~~~~~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~~~~~~~~~ 355 (469)
++|.+++.++ .+++++||+.|||| . ..++..++..+..+.++.+. +++.++++|++|+|++++.++++
T Consensus 143 ~~E~~~~~~~----~~~~~lR~~~v~G~-~--~~~~~~~~~~~~~~~~~~~~-----~~~~~~~i~v~Dva~~~~~~~~~ 210 (292)
T 1vl0_A 143 EGENFVKALN----PKYYIVRTAWLYGD-G--NNFVKTMINLGKTHDELKVV-----HDQVGTPTSTVDLARVVLKVIDE 210 (292)
T ss_dssp HHHHHHHHHC----SSEEEEEECSEESS-S--SCHHHHHHHHHHHCSEEEEE-----SSCEECCEEHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhC----CCeEEEeeeeeeCC-C--cChHHHHHHHHhcCCcEEee-----cCeeeCCccHHHHHHHHHHHHhc
Confidence 9999998864 47999999999999 3 23566777878888887776 45889999999999999999986
Q ss_pred CCCCCCCCCceEEEeCCCCcccHHHHHHHHHHHhCCCccceeecCCC----CCCCCcccCChHHHHHhcCCCccCcHHHH
Q 012176 356 GGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPR----NGDVPYTHANVSLAYKDFGYKPTTDLAAG 431 (469)
Q Consensus 356 ~~~~~~~~~~~iyni~~~~~vt~~el~~~i~~~~g~~~~~~~~~~~~----~~~~~~~~~d~~ka~~~LG~~p~~~l~~~ 431 (469)
+ .+++||+++++++|+.|+++.+.+.+|.+......+... ..+.....+|++|++++|||+|+ +++++
T Consensus 211 ~-------~~~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~-~~~~~ 282 (292)
T 1vl0_A 211 K-------NYGTFHCTCKGICSWYDFAVEIFRLTGIDVKVTPCTTEEFPRPAKRPKYSVLRNYMLELTTGDITR-EWKES 282 (292)
T ss_dssp T-------CCEEEECCCBSCEEHHHHHHHHHHHHCCCCEEEEECSTTSCCSSCCCSBCCBCCHHHHHTTCCCCC-BHHHH
T ss_pred C-------CCcEEEecCCCCccHHHHHHHHHHHhCCCCceeeccccccCcccCCCccccccHHHHHHHcCCCCC-CHHHH
Confidence 4 249999999999999999999999999886655554321 23445678999999999999999 99999
Q ss_pred HHHHHHHHH
Q 012176 432 LRKFVKWYV 440 (469)
Q Consensus 432 l~~~v~~~~ 440 (469)
|+++++||+
T Consensus 283 l~~~~~~~~ 291 (292)
T 1vl0_A 283 LKEYIDLLQ 291 (292)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHhc
Confidence 999999985
|
| >2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-41 Score=338.60 Aligned_cols=297 Identities=23% Similarity=0.330 Sum_probs=240.6
Q ss_pred CCCCCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhcc
Q 012176 112 TPRRPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDV 191 (469)
Q Consensus 112 ~~~~~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~ 191 (469)
.....++|+||||||+||||++|+++|+++|++|++++|......... ....+++++.+|++|.+.++++++.
T Consensus 14 ~~~~~~~~~vlVTGasG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~-------~~l~~v~~~~~Dl~d~~~~~~~~~~ 86 (330)
T 2pzm_A 14 LVPRGSHMRILITGGAGCLGSNLIEHWLPQGHEILVIDNFATGKREVL-------PPVAGLSVIEGSVTDAGLLERAFDS 86 (330)
T ss_dssp CCSTTTCCEEEEETTTSHHHHHHHHHHGGGTCEEEEEECCSSSCGGGS-------CSCTTEEEEECCTTCHHHHHHHHHH
T ss_pred CcccCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCccchhhh-------hccCCceEEEeeCCCHHHHHHHHhh
Confidence 344578899999999999999999999999999999999654221100 0014789999999999999999984
Q ss_pred CCccEEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcCccccCCCCCC--CCCCCCCCCCCCCh
Q 012176 192 VPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQV--PFSESHRTDQPASL 269 (469)
Q Consensus 192 ~~~d~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS~~vyg~~~~~--~~~E~~~~~~p~~~ 269 (469)
.++|+||||||..... ...+++ +++|+.++.+++++|.+.+++ +|||+||.++|+..... +++|++ .+.+.
T Consensus 87 ~~~D~vih~A~~~~~~-~~~~~~--~~~N~~~~~~l~~a~~~~~~~-~iV~~SS~~~~~~~~~~~~~~~E~~---~~~~~ 159 (330)
T 2pzm_A 87 FKPTHVVHSAAAYKDP-DDWAED--AATNVQGSINVAKAASKAGVK-RLLNFQTALCYGRPATVPIPIDSPT---APFTS 159 (330)
T ss_dssp HCCSEEEECCCCCSCT-TCHHHH--HHHHTHHHHHHHHHHHHHTCS-EEEEEEEGGGGCSCSSSSBCTTCCC---CCCSH
T ss_pred cCCCEEEECCccCCCc-cccChh--HHHHHHHHHHHHHHHHHcCCC-EEEEecCHHHhCCCccCCCCcCCCC---CCCCh
Confidence 3449999999975432 223333 899999999999999998876 99999999999876544 788876 56789
Q ss_pred HHHHHHHHHHHHHHHHHHhCCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceEecccHHHHHH-H
Q 012176 270 YAATKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVK-G 348 (469)
Q Consensus 270 Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~-~ 348 (469)
|+.+|.++|.+++.+ ++++++|||+++|||+. ....+..++..+..+. .++ +++. .++++|++|+|+ +
T Consensus 160 Y~~sK~~~e~~~~~~----~~~~~~iR~~~v~gp~~-~~~~~~~~~~~~~~~~--~~~---~~~~-~~~~i~~~Dva~~a 228 (330)
T 2pzm_A 160 YGISKTAGEAFLMMS----DVPVVSLRLANVTGPRL-AIGPIPTFYKRLKAGQ--KCF---CSDT-VRDFLDMSDFLAIA 228 (330)
T ss_dssp HHHHHHHHHHHHHTC----SSCEEEEEECEEECTTC-CSSHHHHHHHHHHTTC--CCC---EESC-EECEEEHHHHHHHH
T ss_pred HHHHHHHHHHHHHHc----CCCEEEEeeeeeECcCC-CCCHHHHHHHHHHcCC--EEe---CCCC-EecceeHHHHHHHH
Confidence 999999999999886 89999999999999986 3456667777777776 333 2355 899999999999 9
Q ss_pred HHHHhccCCCCCCCCCceEEEeCCCCcccHHHHHHHHHHHhCCCccceeecCCCCCCCCcccCChHHH-----HHhcCCC
Q 012176 349 CVGATGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRNGDVPYTHANVSLA-----YKDFGYK 423 (469)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~iyni~~~~~vt~~el~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~d~~ka-----~~~LG~~ 423 (469)
++.+++++ . +++||+++++++|+.|+++.+.+.+|.+ .+...|... +.....+|++|+ ++ |||+
T Consensus 229 ~~~~~~~~-----~--g~~~~v~~~~~~s~~e~~~~i~~~~g~~-~~~~~~~~~--~~~~~~~d~~k~~~~~l~~-lG~~ 297 (330)
T 2pzm_A 229 DLSLQEGR-----P--TGVFNVSTGEGHSIKEVFDVVLDYVGAT-LAEPVPVVA--PGADDVPSVVLDPSKTETE-FGWK 297 (330)
T ss_dssp HHHTSTTC-----C--CEEEEESCSCCEEHHHHHHHHHHHHTCC-CSSCCCEEC--CCTTSCSEECBCCHHHHHH-HCCC
T ss_pred HHHHhhcC-----C--CCEEEeCCCCCCCHHHHHHHHHHHhCCC-CceeCCCCc--chhhccCCHHHHhhchHHH-cCCc
Confidence 99998764 1 5999999999999999999999999987 444333222 455677888888 77 9999
Q ss_pred ccCcHHHHHHHHHHHHHHHcC
Q 012176 424 PTTDLAAGLRKFVKWYVSYYG 444 (469)
Q Consensus 424 p~~~l~~~l~~~v~~~~~~~~ 444 (469)
|+++++++|+++++||+++..
T Consensus 298 p~~~~~~~l~~~~~~~~~~~~ 318 (330)
T 2pzm_A 298 AKVDFKDTITGQLAWYDKYGV 318 (330)
T ss_dssp CCCCHHHHHHHHHHHHHHHCS
T ss_pred ccCCHHHHHHHHHHHHHhhCc
Confidence 999999999999999987743
|
| >2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-41 Score=336.44 Aligned_cols=292 Identities=22% Similarity=0.296 Sum_probs=236.9
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCcc
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFT 195 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~d 195 (469)
.++|+||||||+||||++|+++|+++|++|++++|........+ ....+++++.+|++|.+.+++++++.++|
T Consensus 19 ~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~l-------~~~~~~~~~~~Dl~d~~~~~~~~~~~~~D 91 (333)
T 2q1w_A 19 SHMKKVFITGICGQIGSHIAELLLERGDKVVGIDNFATGRREHL-------KDHPNLTFVEGSIADHALVNQLIGDLQPD 91 (333)
T ss_dssp --CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCGGGS-------CCCTTEEEEECCTTCHHHHHHHHHHHCCS
T ss_pred CCCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEECCCccchhhH-------hhcCCceEEEEeCCCHHHHHHHHhccCCc
Confidence 56789999999999999999999999999999999654221111 01147899999999999999999884459
Q ss_pred EEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcCccccC----CCCCCCCCCCCCCCCCC-ChH
Q 012176 196 HVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYG----LNTQVPFSESHRTDQPA-SLY 270 (469)
Q Consensus 196 ~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS~~vyg----~~~~~~~~E~~~~~~p~-~~Y 270 (469)
+||||||..... ...+++ +++|+.++.+++++|++.+++ +|||+||.++|+ .... +++|++ .|. +.|
T Consensus 92 ~vih~A~~~~~~-~~~~~~--~~~N~~~~~~l~~a~~~~~~~-~iV~~SS~~~~g~~~~~~~~-~~~E~~---~p~~~~Y 163 (333)
T 2q1w_A 92 AVVHTAASYKDP-DDWYND--TLTNCVGGSNVVQAAKKNNVG-RFVYFQTALCYGVKPIQQPV-RLDHPR---NPANSSY 163 (333)
T ss_dssp EEEECCCCCSCT-TCHHHH--HHHHTHHHHHHHHHHHHTTCS-EEEEEEEGGGGCSCCCSSSB-CTTSCC---CCTTCHH
T ss_pred EEEECceecCCC-ccCChH--HHHHHHHHHHHHHHHHHhCCC-EEEEECcHHHhCCCcccCCC-CcCCCC---CCCCCch
Confidence 999999975432 223333 899999999999999998876 999999999998 5555 788877 456 899
Q ss_pred HHHHHHHHHHHHH-HHHHhCCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceEecccHHHHHHHH
Q 012176 271 AATKKAGEEIAHT-YNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGC 349 (469)
Q Consensus 271 ~~sK~~~E~~~~~-~~~~~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~~~ 349 (469)
+.+|.++|.+++. ++ +++++||+++|||+. ....+..+++.+..+. .++ + +++.++++|++|+|+++
T Consensus 164 ~~sK~~~E~~~~~s~~-----~~~ilR~~~v~gp~~-~~~~~~~~~~~~~~~~--~~~---~-~~~~~~~i~v~Dva~ai 231 (333)
T 2q1w_A 164 AISKSANEDYLEYSGL-----DFVTFRLANVVGPRN-VSGPLPIFFQRLSEGK--KCF---V-TKARRDFVFVKDLARAT 231 (333)
T ss_dssp HHHHHHHHHHHHHHTC-----CEEEEEESEEESTTC-CSSHHHHHHHHHHTTC--CCE---E-EECEECEEEHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhC-----CeEEEeeceEECcCC-cCcHHHHHHHHHHcCC--eee---C-CCceEeeEEHHHHHHHH
Confidence 9999999999988 65 789999999999983 3456677888887776 333 3 57789999999999999
Q ss_pred HHHhccCCCCCCCCCceEEEeCCCCcccHHHHHHHHHHHhCCCccceeecCCCC---CCCCcccCChHHHHHhcCCCccC
Q 012176 350 VGATGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRN---GDVPYTHANVSLAYKDFGYKPTT 426 (469)
Q Consensus 350 ~~~~~~~~~~~~~~~~~iyni~~~~~vt~~el~~~i~~~~g~~~~~~~~~~~~~---~~~~~~~~d~~ka~~~LG~~p~~ 426 (469)
+.+++++. +++||+++++++|+.|+++.+.+.+|.+ .+...|.+.. .......+|++|+++. ||+|.+
T Consensus 232 ~~~~~~~~-------g~~~~v~~~~~~s~~e~~~~i~~~~g~~-~~~~~~~~~~~~~~~~~~~~~d~~k~~~~-G~~p~~ 302 (333)
T 2q1w_A 232 VRAVDGVG-------HGAYHFSSGTDVAIKELYDAVVEAMALP-SYPEPEIRELGPDDAPSILLDPSRTIQDF-GKIEFT 302 (333)
T ss_dssp HHHHTTCC-------CEEEECSCSCCEEHHHHHHHHHHHTTCS-SCCCCEEEECCTTSCCCCCBCCHHHHHHH-CCCCCC
T ss_pred HHHHhcCC-------CCEEEeCCCCCccHHHHHHHHHHHhCCC-CceeCCCCCcccccccccccCCHHHHHhc-CCCcCC
Confidence 99998752 5999999999999999999999999987 4444333210 1114577899999998 999999
Q ss_pred cHHHHHHHHHHHHHHHc
Q 012176 427 DLAAGLRKFVKWYVSYY 443 (469)
Q Consensus 427 ~l~~~l~~~v~~~~~~~ 443 (469)
+++++|+++++||++..
T Consensus 303 ~~~~~l~~~~~~~~~~~ 319 (333)
T 2q1w_A 303 PLKETVAAAVAYFREYG 319 (333)
T ss_dssp CHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHHC
Confidence 99999999999998774
|
| >3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-42 Score=334.49 Aligned_cols=279 Identities=17% Similarity=0.165 Sum_probs=231.6
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCccE
Q 012176 117 NGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTH 196 (469)
Q Consensus 117 ~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~d~ 196 (469)
++|+||||| +||||++|+++|+++|++|++++|..... ..+++++.+|++|.+.+.+++++ ++|+
T Consensus 2 ~~~~ilVtG-aG~iG~~l~~~L~~~g~~V~~~~r~~~~~-------------~~~~~~~~~Dl~d~~~~~~~~~~-~~d~ 66 (286)
T 3gpi_A 2 SLSKILIAG-CGDLGLELARRLTAQGHEVTGLRRSAQPM-------------PAGVQTLIADVTRPDTLASIVHL-RPEI 66 (286)
T ss_dssp CCCCEEEEC-CSHHHHHHHHHHHHTTCCEEEEECTTSCC-------------CTTCCEEECCTTCGGGCTTGGGG-CCSE
T ss_pred CCCcEEEEC-CCHHHHHHHHHHHHCCCEEEEEeCCcccc-------------ccCCceEEccCCChHHHHHhhcC-CCCE
Confidence 467899999 59999999999999999999999965431 24889999999999999999987 3599
Q ss_pred EEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcCccccCCCCCCCCCCCCCCCCCCChHHHHHHH
Q 012176 197 VLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKA 276 (469)
Q Consensus 197 Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y~~sK~~ 276 (469)
|||+||.. ..++...+++|+.++.+++++|++.+++ +|||+||.++||.....+++|+++. .|.+.|+.+|.+
T Consensus 67 vih~a~~~-----~~~~~~~~~~n~~~~~~ll~a~~~~~~~-~~v~~SS~~vyg~~~~~~~~E~~~~-~p~~~Y~~sK~~ 139 (286)
T 3gpi_A 67 LVYCVAAS-----EYSDEHYRLSYVEGLRNTLSALEGAPLQ-HVFFVSSTGVYGQEVEEWLDEDTPP-IAKDFSGKRMLE 139 (286)
T ss_dssp EEECHHHH-----HHC-----CCSHHHHHHHHHHTTTSCCC-EEEEEEEGGGCCCCCSSEECTTSCC-CCCSHHHHHHHH
T ss_pred EEEeCCCC-----CCCHHHHHHHHHHHHHHHHHHHhhCCCC-EEEEEcccEEEcCCCCCCCCCCCCC-CCCChhhHHHHH
Confidence 99999862 2566778899999999999999998876 9999999999998888889999887 788999999999
Q ss_pred HHHHHHHHHHHhCCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceEecccHHHHHHHHHHHhccC
Q 012176 277 GEEIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGATGSG 356 (469)
Q Consensus 277 ~E~~~~~~~~~~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~~~~~~~~~~ 356 (469)
+|.+ +.+ ++++++||++||||+.. .++..+.. +.. . +++++.++|+|++|+|++++.+++++
T Consensus 140 ~E~~-~~~-----~~~~ilR~~~v~G~~~~------~~~~~~~~-~~~--~---~~~~~~~~~i~v~Dva~~~~~~~~~~ 201 (286)
T 3gpi_A 140 AEAL-LAA-----YSSTILRFSGIYGPGRL------RMIRQAQT-PEQ--W---PARNAWTNRIHRDDGAAFIAYLIQQR 201 (286)
T ss_dssp HHHH-GGG-----SSEEEEEECEEEBTTBC------HHHHHTTC-GGG--S---CSSBCEECEEEHHHHHHHHHHHHHHH
T ss_pred HHHH-Hhc-----CCeEEEecccccCCCch------hHHHHHHh-ccc--C---CCcCceeEEEEHHHHHHHHHHHHhhh
Confidence 9998 553 89999999999999765 35555555 332 1 56889999999999999999999874
Q ss_pred CCCCCCCCceEEEeCCCCcccHHHHHHHHHHHhCCCccceeecCCCCCCCCcccCChHHHHHhcCCCccC-cHHHHHHHH
Q 012176 357 GKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRNGDVPYTHANVSLAYKDFGYKPTT-DLAAGLRKF 435 (469)
Q Consensus 357 ~~~~~~~~~~iyni~~~~~vt~~el~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~-~l~~~l~~~ 435 (469)
.. ...+++||+++++++|+.|+++.+.+.+|.+......+ .+.....+|++|++ +|||+|++ +|+++|+++
T Consensus 202 ~~---~~~~~~~~~~~~~~~s~~e~~~~i~~~~g~~~~~~~~~----~~~~~~~~d~~k~~-~lG~~p~~~~l~e~l~~~ 273 (286)
T 3gpi_A 202 SH---AVPERLYIVTDNQPLPVHDLLRWLADRQGIAYPAGATP----PVQGNKKLSNARLL-ASGYQLIYPDYVSGYGAL 273 (286)
T ss_dssp TT---SCCCSEEEECCSCCEEHHHHHHHHHHHTTCCCCCSCCC----CBCSSCEECCHHHH-HTTCCCSSCSHHHHHHHH
T ss_pred cc---CCCCceEEEeCCCCCCHHHHHHHHHHHcCCCCCCCCCc----ccCCCeEeeHHHHH-HcCCCCcCCcHHHHHHHH
Confidence 21 13459999999999999999999999999887554332 44566789999998 89999999 699999999
Q ss_pred HHHHHHHc
Q 012176 436 VKWYVSYY 443 (469)
Q Consensus 436 v~~~~~~~ 443 (469)
++|+....
T Consensus 274 ~~~~~~~~ 281 (286)
T 3gpi_A 274 LAAMREGH 281 (286)
T ss_dssp HHHHTC--
T ss_pred HHHHhccc
Confidence 99996543
|
| >3ajr_A NDP-sugar epimerase; L-threonine dehydrogenase, L-3- hydroxynorvaline, oxidoreductase; HET: NAD; 1.77A {Thermoplasma volcanium} PDB: 3a9w_A* 3a4v_A* 3a1n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-40 Score=327.78 Aligned_cols=302 Identities=19% Similarity=0.232 Sum_probs=238.5
Q ss_pred EEEEEcCCChhHHHHHHHHHHC--CCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCccEE
Q 012176 120 TVLVTGAAGFVGSHCSLALKKR--GDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTHV 197 (469)
Q Consensus 120 ~VlVtGatG~IG~~l~~~L~~~--G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~d~V 197 (469)
+||||||+||||++|+++|+++ |++|++++|...... ++.++.+|++|.+.+.++++..++|+|
T Consensus 1 ~vlVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~--------------~~~~~~~D~~d~~~~~~~~~~~~~d~v 66 (317)
T 3ajr_A 1 MILVTGSSGQIGTELVPYLAEKYGKKNVIASDIVQRDTG--------------GIKFITLDVSNRDEIDRAVEKYSIDAI 66 (317)
T ss_dssp CEEEESTTSTTHHHHHHHHHHHHCGGGEEEEESSCCCCT--------------TCCEEECCTTCHHHHHHHHHHTTCCEE
T ss_pred CEEEEcCCcHHHHHHHHHHHHhcCCCEEEEecCCCcccc--------------CceEEEecCCCHHHHHHHHhhcCCcEE
Confidence 4899999999999999999999 899999998654211 567899999999999999985566999
Q ss_pred EEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcCccccCCCC-CCCCCCCCCCCCCCChHHHHHHH
Q 012176 198 LHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNT-QVPFSESHRTDQPASLYAATKKA 276 (469)
Q Consensus 198 ih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS~~vyg~~~-~~~~~E~~~~~~p~~~Y~~sK~~ 276 (469)
||+||.... ....+++..+++|+.++.+++++|++.+++ +|||+||.++|+... ..+.+|+++. .|.+.|+.+|.+
T Consensus 67 ih~a~~~~~-~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~-~~v~~SS~~~~~~~~~~~~~~e~~~~-~p~~~Y~~sK~~ 143 (317)
T 3ajr_A 67 FHLAGILSA-KGEKDPALAYKVNMNGTYNILEAAKQHRVE-KVVIPSTIGVFGPETPKNKVPSITIT-RPRTMFGVTKIA 143 (317)
T ss_dssp EECCCCCHH-HHHHCHHHHHHHHHHHHHHHHHHHHHTTCC-EEEEEEEGGGCCTTSCSSSBCSSSCC-CCCSHHHHHHHH
T ss_pred EECCcccCC-ccccChHHHhhhhhHHHHHHHHHHHHcCCC-EEEEecCHHHhCCCCCCCCccccccC-CCCchHHHHHHH
Confidence 999997432 234677889999999999999999999876 999999999998753 3456666655 788999999999
Q ss_pred HHHHHHHHHHHhCCcEEEEeecceecCCCCCC----ChHHHHHHHHHcCCceEEEeeCCCCcceEecccHHHHHHHHHHH
Q 012176 277 GEEIAHTYNHIYGLALTGLRFFTVYGPWGRPD----MAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGA 352 (469)
Q Consensus 277 ~E~~~~~~~~~~gi~~~ilRp~~v~Gp~~~~~----~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~~~~~~ 352 (469)
+|.+++.++.++|++++++||+.+||+...+. .....++.....++.+..+ +++++.++|+|++|+|++++.+
T Consensus 144 ~e~~~~~~~~~~~~~~~~lR~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~i~v~Dva~a~~~~ 220 (317)
T 3ajr_A 144 AELLGQYYYEKFGLDVRSLRYPGIISYKAEPTAGTTDYAVEIFYYAVKREKYKCY---LAPNRALPMMYMPDALKALVDL 220 (317)
T ss_dssp HHHHHHHHHHHHCCEEEEEEECEEECSSSCCCSCSSTHHHHHHHHHHTTCCEEEC---SCTTCCEEEEEHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCeEEEEecCcEeccCCCCCCcchhHHHHHHHHHHhCCCceee---cCccceeeeeEHHHHHHHHHHH
Confidence 99999999888899999999999999754322 1222333444555555555 5577889999999999999999
Q ss_pred hccCCCCCCCCCceEEEeCCCCcccHHHHHHHHHHHhCCCccceeecCCC--CCCCCcccCChHHHHHhcCCCccCcHHH
Q 012176 353 TGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPR--NGDVPYTHANVSLAYKDFGYKPTTDLAA 430 (469)
Q Consensus 353 ~~~~~~~~~~~~~~iyni~~~~~vt~~el~~~i~~~~g~~~~~~~~~~~~--~~~~~~~~~d~~ka~~~LG~~p~~~l~~ 430 (469)
++++... ...+++||+++ ..+|+.|+++.+.+.+|. ..+...+... ........+|++|++++|||+|.+++++
T Consensus 221 l~~~~~~--~~~g~~~~i~~-~~~s~~e~~~~i~~~~~~-~~i~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~~~~ 296 (317)
T 3ajr_A 221 YEADRDK--LVLRNGYNVTA-YTFTPSELYSKIKERIPE-FEIEYKEDFRDKIAATWPESLDSSEASNEWGFSIEYDLDR 296 (317)
T ss_dssp HHCCGGG--CSSCSCEECCS-EEECHHHHHHHHHTTCCS-CCEEECCCHHHHHHTTSCSCBCCHHHHHHHCCCCCCCHHH
T ss_pred HhCCccc--cccCceEecCC-ccccHHHHHHHHHHHCCc-cccccccccchhhccccccccCHHHHHHHcCCCCCCCHHH
Confidence 9875311 11348999997 579999999999999983 2222222100 0111234679999999999999999999
Q ss_pred HHHHHHHHHHHHcCC
Q 012176 431 GLRKFVKWYVSYYGI 445 (469)
Q Consensus 431 ~l~~~v~~~~~~~~~ 445 (469)
+|+++++||++.+..
T Consensus 297 ~l~~~~~~~~~~~~~ 311 (317)
T 3ajr_A 297 TIDDMIDHISEKLGI 311 (317)
T ss_dssp HHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHhhhcc
Confidence 999999999988764
|
| >1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA; 3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-40 Score=361.22 Aligned_cols=312 Identities=21% Similarity=0.328 Sum_probs=256.9
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHC-CCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHH-HHHhhccCC
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKR-GDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPL-LTKLFDVVP 193 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~-l~~~~~~~~ 193 (469)
.++|+||||||+||||++|+++|+++ |++|++++|...... ......+++++.+|++|.++ ++++++++
T Consensus 313 ~~~~~VLVTGatG~IG~~l~~~Ll~~~g~~V~~~~r~~~~~~--------~~~~~~~v~~v~~Dl~d~~~~~~~~~~~~- 383 (660)
T 1z7e_A 313 RRRTRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAIS--------RFLNHPHFHFVEGDISIHSEWIEYHVKKC- 383 (660)
T ss_dssp -CCEEEEEETTTSHHHHHHHHHHHHSSSEEEEEEESCCTTTG--------GGTTCTTEEEEECCTTTCHHHHHHHHHHC-
T ss_pred ccCceEEEEcCCcHHHHHHHHHHHhcCCCEEEEEEcCchhhh--------hhccCCceEEEECCCCCcHHHHHHhhcCC-
Confidence 35789999999999999999999998 899999999764321 11224589999999999765 78888877
Q ss_pred ccEEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcCccccCCCCCCCCCCCCCC------CCCC
Q 012176 194 FTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRT------DQPA 267 (469)
Q Consensus 194 ~d~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~------~~p~ 267 (469)
|+|||+||.........++...+++|+.++.+++++|++.+ + +|||+||.++||.....+++|+++. ..|.
T Consensus 384 -D~Vih~Aa~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~~-~-r~V~~SS~~vyg~~~~~~~~E~~~~~~~~p~~~p~ 460 (660)
T 1z7e_A 384 -DVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYR-K-RIIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPR 460 (660)
T ss_dssp -SEEEECCCCCCTHHHHHSHHHHHHHHTHHHHHHHHHHHHTT-C-EEEEECCGGGGBTCCSSSBCTTTCCEEECCTTCTT
T ss_pred -CEEEECceecCccccccCHHHHHHhhhHHHHHHHHHHHHhC-C-EEEEEecHHHcCCCCCcccCCCccccccCcccCCC
Confidence 99999999866554556788899999999999999999988 4 9999999999998777788888742 1455
Q ss_pred ChHHHHHHHHHHHHHHHHHHhCCcEEEEeecceecCCCCC--------CChHHHHHHHHHcCCceEEEeeCCCCcceEec
Q 012176 268 SLYAATKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRP--------DMAYFFFTKDILQGKTIDVYKTQDDREVARDF 339 (469)
Q Consensus 268 ~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~Gp~~~~--------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 339 (469)
+.|+.+|.++|.+++.++.++|++++++||++||||+... ...+..++..+..|.++.++ +++++.++|
T Consensus 461 ~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRpg~v~Gp~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~---g~g~~~~~~ 537 (660)
T 1z7e_A 461 WIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLI---DGGKQKRCF 537 (660)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCCEEEEEECSEESTTSSCHHHHTTTCSCHHHHHHHHHHHTCCEEEE---GGGCCEEEC
T ss_pred CCcHHHHHHHHHHHHHHHHHcCCCEEEECCCcccCCCccccccccccccchHHHHHHHHHcCCCcEEe---CCCCeEEEE
Confidence 6899999999999999988889999999999999997643 44667888888899988887 567899999
Q ss_pred ccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCC-cccHHHHHHHHHHHhCCCccceeecCC--------------CCC
Q 012176 340 TYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTS-PVPVGRLVSILENLLNTKAKKHVIRMP--------------RNG 404 (469)
Q Consensus 340 v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~-~vt~~el~~~i~~~~g~~~~~~~~~~~--------------~~~ 404 (469)
+|++|+|++++.+++++.. ...+++||+++++ ++|+.|+++.+.+.+|.+......|.. ...
T Consensus 538 i~v~Dva~ai~~~l~~~~~---~~~g~~~ni~~~~~~~s~~el~~~i~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 614 (660)
T 1z7e_A 538 TDIRDGIEALYRIIENAGN---RCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGFRVVESSSYYGKGYQ 614 (660)
T ss_dssp EEHHHHHHHHHHHHHCGGG---TTTTEEEEECCGGGEEEHHHHHHHHHHHHHHCTTGGGSCCCCCEEEECTHHHHCTTCC
T ss_pred EEHHHHHHHHHHHHhCccc---cCCCeEEEECCCCCCcCHHHHHHHHHHHhcCCCcccccCccccccchhcccccccccc
Confidence 9999999999999886521 1345999999986 899999999999999875433222211 112
Q ss_pred CCCcccCChHHHHHhcCCCccCcHHHHHHHHHHHHHHHcCC
Q 012176 405 DVPYTHANVSLAYKDFGYKPTTDLAAGLRKFVKWYVSYYGI 445 (469)
Q Consensus 405 ~~~~~~~d~~ka~~~LG~~p~~~l~~~l~~~v~~~~~~~~~ 445 (469)
+.....+|++|++++|||+|+++++++|+++++||+++...
T Consensus 615 ~~~~~~~d~~ka~~~LG~~p~~~l~egl~~~i~~~~~~~~~ 655 (660)
T 1z7e_A 615 DVEHRKPSIRNAHRCLDWEPKIDMQETIDETLDFFLRTVDL 655 (660)
T ss_dssp CCSCCCBCCHHHHHHHCCCCCCCHHHHHHHHHHHHHTTSCC
T ss_pred chhhcccCHHHHHHhcCCCccCcHHHHHHHHHHHHHhhccc
Confidence 34556789999999999999999999999999999877653
|
| >1z45_A GAL10 bifunctional protein; epimerase, mutarotase, metabolism, isomerase; HET: GAL NAD GUD; 1.85A {Saccharomyces cerevisiae} SCOP: b.30.5.4 c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=9e-40 Score=356.71 Aligned_cols=325 Identities=26% Similarity=0.332 Sum_probs=250.1
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCcc
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFT 195 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~d 195 (469)
.++|+||||||+||||++|+++|+++|++|++++|............ ..+...+++++.+|++|.+.++++++..++|
T Consensus 9 ~~~~~ilVTGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~l--~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~D 86 (699)
T 1z45_A 9 STSKIVLVTGGAGYIGSHTVVELIENGYDCVVADNLSNSTYDSVARL--EVLTKHHIPFYEVDLCDRKGLEKVFKEYKID 86 (699)
T ss_dssp --CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCTHHHHHH--HHHHTSCCCEEECCTTCHHHHHHHHHHSCCC
T ss_pred cCCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCCcchHHHHHHH--hhccCCceEEEEcCCCCHHHHHHHHHhCCCC
Confidence 56789999999999999999999999999999999765433222211 1122457899999999999999999855569
Q ss_pred EEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcCccccCCCC----CCCCCCCCCCCCCCChHH
Q 012176 196 HVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNT----QVPFSESHRTDQPASLYA 271 (469)
Q Consensus 196 ~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS~~vyg~~~----~~~~~E~~~~~~p~~~Y~ 271 (469)
+|||+||.........++...+++|+.++.+++++|++.+++ +||++||.++||... ..+++|+++. .|.+.|+
T Consensus 87 ~Vih~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~~~~-~iV~~SS~~vyg~~~~~~~~~~~~E~~~~-~p~~~Y~ 164 (699)
T 1z45_A 87 SVIHFAGLKAVGESTQIPLRYYHNNILGTVVLLELMQQYNVS-KFVFSSSATVYGDATRFPNMIPIPEECPL-GPTNPYG 164 (699)
T ss_dssp EEEECCSCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTCC-EEEEEEEGGGGCCGGGSTTCCSBCTTSCC-CCCSHHH
T ss_pred EEEECCcccCcCccccCHHHHHHHHHHHHHHHHHHHHHcCCC-EEEEECcHHHhCCCccccccCCccccCCC-CCCChHH
Confidence 999999986655455667789999999999999999998876 999999999998643 2467787765 6789999
Q ss_pred HHHHHHHHHHHHHHHH--hCCcEEEEeecceecCCCC----------CCChHHHHHHHHH-cCCceEEEee---CCCCcc
Q 012176 272 ATKKAGEEIAHTYNHI--YGLALTGLRFFTVYGPWGR----------PDMAYFFFTKDIL-QGKTIDVYKT---QDDREV 335 (469)
Q Consensus 272 ~sK~~~E~~~~~~~~~--~gi~~~ilRp~~v~Gp~~~----------~~~~~~~~~~~~~-~g~~~~~~~~---~~~~~~ 335 (469)
.+|.++|.+++.++.+ ++++++++||++||||+.. ...++..+...+. .+.++.+++. ..++++
T Consensus 165 ~sK~~~E~~~~~~~~~~~~g~~~~ilR~~~vyG~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~ 244 (699)
T 1z45_A 165 HTKYAIENILNDLYNSDKKSWKFAILRYFNPIGAHPSGLIGEDPLGIPNNLLPYMAQVAVGRREKLYIFGDDYDSRDGTP 244 (699)
T ss_dssp HHHHHHHHHHHHHHHHSTTSCEEEEEEECEEECCCTTSSCCCCCSSSCCSHHHHHHHHHTTSSSCCCCC------CCSSC
T ss_pred HHHHHHHHHHHHHHHhccCCCcEEEEEeccccCCCcccccccccccchhHHHHHHHHHHhcCCCceEEeCCcccCCCCCe
Confidence 9999999999999877 6999999999999998521 1234444443332 2345555520 015788
Q ss_pred eEecccHHHHHHHHHHHhccCCCC-CCCCCceEEEeCCCCcccHHHHHHHHHHHhCCCccceeecCCCCCCCCcccCChH
Q 012176 336 ARDFTYIDDVVKGCVGATGSGGKK-RGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRNGDVPYTHANVS 414 (469)
Q Consensus 336 ~~~~v~v~Dva~~~~~~~~~~~~~-~~~~~~~iyni~~~~~vt~~el~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~d~~ 414 (469)
.++|+||+|+|++++.+++..... .....+++||+++++++|+.|+++.+.+.+|.+.+....+. +.++.....+|++
T Consensus 245 ~~~~i~v~Dva~a~~~a~~~~~~~~~~~~~~~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~~~~-~~~~~~~~~~d~~ 323 (699)
T 1z45_A 245 IRDYIHVVDLAKGHIAALQYLEAYNENEGLCREWNLGSGKGSTVFEVYHAFCKASGIDLPYKVTGR-RAGDVLNLTAKPD 323 (699)
T ss_dssp EECEEEHHHHHHHHHHHHHHHHHSCTTCCEEEEEEESCSCCEEHHHHHHHHHHHHTCCCCC----------CCCCCBCCH
T ss_pred eEeeEEHHHHHHHHHHHHhhhhccccccCCceEEEECCCCCCcHHHHHHHHHHHhCCCCCceecCC-CCCccccccCCHH
Confidence 999999999999999998642100 00123589999999999999999999999998866554432 3445667789999
Q ss_pred HHHHhcCCCccCcHHHHHHHHHHHHHHHcCC
Q 012176 415 LAYKDFGYKPTTDLAAGLRKFVKWYVSYYGI 445 (469)
Q Consensus 415 ka~~~LG~~p~~~l~~~l~~~v~~~~~~~~~ 445 (469)
|++++|||+|+++++++|+++++||+++...
T Consensus 324 ka~~~LG~~p~~~l~egl~~~~~w~~~~~~~ 354 (699)
T 1z45_A 324 RAKRELKWQTELQVEDSCKDLWKWTTENPFG 354 (699)
T ss_dssp HHHHHTCCCCCCCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHhcCCCCCCCHHHHHHHHHHHHHhCCcc
Confidence 9999999999999999999999999887543
|
| >2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-41 Score=330.11 Aligned_cols=292 Identities=18% Similarity=0.201 Sum_probs=212.3
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCccEE
Q 012176 118 GMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTHV 197 (469)
Q Consensus 118 ~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~d~V 197 (469)
+|+||||||+||||++|+++|+++|++|++++|.... .+ ++.+|++|.+.+.+++++.++|+|
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~---------------~~--~~~~Dl~d~~~~~~~~~~~~~d~v 64 (315)
T 2ydy_A 2 NRRVLVTGATGLLGRAVHKEFQQNNWHAVGCGFRRAR---------------PK--FEQVNLLDSNAVHHIIHDFQPHVI 64 (315)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHTTTCEEEEEC-----------------------------------CHHHHHHHCCSEE
T ss_pred CCeEEEECCCcHHHHHHHHHHHhCCCeEEEEccCCCC---------------CC--eEEecCCCHHHHHHHHHhhCCCEE
Confidence 5799999999999999999999999999999984321 12 678999999999999987566999
Q ss_pred EEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcCccccCCCCCCCCCCCCCCCCCCChHHHHHHHH
Q 012176 198 LHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAG 277 (469)
Q Consensus 198 ih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y~~sK~~~ 277 (469)
|||||......+..+++..+++|+.++.+++++|++.+. +|||+||.++|+. ...+++|+++. .|.+.|+.+|.++
T Consensus 65 ih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~--~~v~~SS~~v~~~-~~~~~~E~~~~-~~~~~Y~~sK~~~ 140 (315)
T 2ydy_A 65 VHCAAERRPDVVENQPDAASQLNVDASGNLAKEAAAVGA--FLIYISSDYVFDG-TNPPYREEDIP-APLNLYGKTKLDG 140 (315)
T ss_dssp EECC-------------------CHHHHHHHHHHHHHTC--EEEEEEEGGGSCS-SSCSBCTTSCC-CCCSHHHHHHHHH
T ss_pred EECCcccChhhhhcCHHHHHHHHHHHHHHHHHHHHHcCC--eEEEEchHHHcCC-CCCCCCCCCCC-CCcCHHHHHHHHH
Confidence 999998655545677888999999999999999999874 8999999999987 55688998876 7889999999999
Q ss_pred HHHHHHHHHHhCCcEEEEeecceecCCCCCC-ChHHHHHHHHH-cCCceEEEeeCCCCcceEecccHHHHHHHHHHHhcc
Q 012176 278 EEIAHTYNHIYGLALTGLRFFTVYGPWGRPD-MAYFFFTKDIL-QGKTIDVYKTQDDREVARDFTYIDDVVKGCVGATGS 355 (469)
Q Consensus 278 E~~~~~~~~~~gi~~~ilRp~~v~Gp~~~~~-~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~v~v~Dva~~~~~~~~~ 355 (469)
|.+++.+ ++++++|||+.||||..... .++..++..+. .+.++.+. +++.++++|++|+|++++.++.+
T Consensus 141 e~~~~~~----~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~i~v~Dva~a~~~~~~~ 211 (315)
T 2ydy_A 141 EKAVLEN----NLGAAVLRIPILYGEVEKLEESAVTVMFDKVQFSNKSANMD-----HWQQRFPTHVKDVATVCRQLAEK 211 (315)
T ss_dssp HHHHHHH----CTTCEEEEECSEECSCSSGGGSTTGGGHHHHHCCSSCEEEE-----CSSBBCCEEHHHHHHHHHHHHHH
T ss_pred HHHHHHh----CCCeEEEeeeeeeCCCCcccccHHHHHHHHHHhcCCCeeec-----cCceECcEEHHHHHHHHHHHHHh
Confidence 9999885 57789999999999976521 23445667777 77777665 46789999999999999999875
Q ss_pred CCCCCCCCCceEEEeCCCCcccHHHHHHHHHHHhCCCcc-ceeecC-C--CCCCCCcccCChHHHHHhcCCCccCcHHHH
Q 012176 356 GGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAK-KHVIRM-P--RNGDVPYTHANVSLAYKDFGYKPTTDLAAG 431 (469)
Q Consensus 356 ~~~~~~~~~~~iyni~~~~~vt~~el~~~i~~~~g~~~~-~~~~~~-~--~~~~~~~~~~d~~ka~~~LG~~p~~~l~~~ 431 (469)
+.. +...+++||+++++++|+.|+++.+.+.+|.+.. +...+. + .........+|++|++++ ||+|.++++++
T Consensus 212 ~~~--~~~~~~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~-G~~p~~~~~~~ 288 (315)
T 2ydy_A 212 RML--DPSIKGTFHWSGNEQMTKYEMACAIADAFNLPSSHLRPITDSPVLGAQRPRNAQLDCSKLETL-GIGQRTPFRIG 288 (315)
T ss_dssp HHT--CTTCCEEEECCCSCCBCHHHHHHHHHHHTTCCCTTEEEECSCCCSSSCCCSBCCBCCHHHHHT-TCCCCCCHHHH
T ss_pred hcc--ccCCCCeEEEcCCCcccHHHHHHHHHHHhCCChhheeccccccccccCCCcccccchHHHHhc-CCCCCCCHHHH
Confidence 300 0123599999999999999999999999998764 333332 2 122344677899999988 99999999999
Q ss_pred HHHHHHHHHHH
Q 012176 432 LRKFVKWYVSY 442 (469)
Q Consensus 432 l~~~v~~~~~~ 442 (469)
|+++++||++.
T Consensus 289 l~~~~~~~~~~ 299 (315)
T 2ydy_A 289 IKESLWPFLID 299 (315)
T ss_dssp HHHHHGGGCC-
T ss_pred HHHHHHHHccc
Confidence 99999998654
|
| >2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; agrobacterium tumefa structural genomics, PSI-2, protein structure initiative; 1.85A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-40 Score=327.30 Aligned_cols=305 Identities=18% Similarity=0.146 Sum_probs=244.8
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCC-------CcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHh
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRG-------DGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKL 188 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G-------~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~ 188 (469)
.++|+||||||+||||++|+++|+++| ++|++++|....... ....+++++.+|++|.+.++++
T Consensus 12 ~~~~~vlVtGa~G~iG~~l~~~L~~~g~~~~r~~~~V~~~~r~~~~~~~---------~~~~~~~~~~~Dl~d~~~~~~~ 82 (342)
T 2hrz_A 12 FQGMHIAIIGAAGMVGRKLTQRLVKDGSLGGKPVEKFTLIDVFQPEAPA---------GFSGAVDARAADLSAPGEAEKL 82 (342)
T ss_dssp CSCEEEEEETTTSHHHHHHHHHHHHHCEETTEEEEEEEEEESSCCCCCT---------TCCSEEEEEECCTTSTTHHHHH
T ss_pred ccCCEEEEECCCcHHHHHHHHHHHhcCCcccCCCceEEEEEccCCcccc---------ccCCceeEEEcCCCCHHHHHHH
Confidence 567899999999999999999999999 899999997543221 1234788999999999999999
Q ss_pred hccCCccEEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcC-----CCCeEEEEcCccccCCCCCCCCCCCCCC
Q 012176 189 FDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVN-----PQPSIVWASSSSVYGLNTQVPFSESHRT 263 (469)
Q Consensus 189 ~~~~~~d~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~-----~~~~~V~~SS~~vyg~~~~~~~~E~~~~ 263 (469)
+++ ++|+||||||... ....++++..+++|+.++.+++++|++.+ ++ +||++||.++|+.....+++|+++.
T Consensus 83 ~~~-~~d~vih~A~~~~-~~~~~~~~~~~~~nv~g~~~l~~~~~~~~~~~~~~~-~iv~~SS~~~~~~~~~~~~~E~~~~ 159 (342)
T 2hrz_A 83 VEA-RPDVIFHLAAIVS-GEAELDFDKGYRINLDGTRYLFDAIRIANGKDGYKP-RVVFTSSIAVFGAPLPYPIPDEFHT 159 (342)
T ss_dssp HHT-CCSEEEECCCCCH-HHHHHCHHHHHHHHTHHHHHHHHHHHHHHHHHCCCC-EEEEEEEGGGCCSSCCSSBCTTCCC
T ss_pred Hhc-CCCEEEECCccCc-ccccccHHHHHHHHHHHHHHHHHHHHhcccccCCCc-EEEEeCchHhhCCCCCCCcCCCCCC
Confidence 852 3499999999743 23456788899999999999999998876 54 9999999999997656689998876
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHhCCcEEEEeecceec-CCCCCC---ChHHHHHHHHHcCCceEEEeeCCCCcceEec
Q 012176 264 DQPASLYAATKKAGEEIAHTYNHIYGLALTGLRFFTVYG-PWGRPD---MAYFFFTKDILQGKTIDVYKTQDDREVARDF 339 (469)
Q Consensus 264 ~~p~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~G-p~~~~~---~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 339 (469)
.|.+.|+.+|.++|.++++++.+++++++++|++.||| |+.... .++..++..+..++++.++ .+++...++
T Consensus 160 -~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~ir~~~v~g~pg~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 235 (342)
T 2hrz_A 160 -TPLTSYGTQKAICELLLSDYSRRGFFDGIGIRLPTICIRPGKPNAAASGFFSNILREPLVGQEAVLP---VPESIRHWH 235 (342)
T ss_dssp -CCSSHHHHHHHHHHHHHHHHHHTTSCEEEEEEECEETTCCSSCCCSGGGHHHHHHHHHHTTCCEEEC---SCTTCEEEE
T ss_pred -CCcchHHHHHHHHHHHHHHHHHhcCCCceeEEeeeEEecCCCCcchhHHHHHHHHHHHhcCCCeecc---CCCccceee
Confidence 68899999999999999999988889999999999999 654322 3456777888888887665 445778889
Q ss_pred ccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCCcccHHHHHHHHHHHhCCCcc--ceeecCCCCC---CCCcccCChH
Q 012176 340 TYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAK--KHVIRMPRNG---DVPYTHANVS 414 (469)
Q Consensus 340 v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~~vt~~el~~~i~~~~g~~~~--~~~~~~~~~~---~~~~~~~d~~ 414 (469)
+|++|+|++++.+++.+... ...+++||++ ++++|+.|+++.+.+.+|.+.. +...+.+... ......+|++
T Consensus 236 ~~v~Dva~~~~~~~~~~~~~--~~~~~~~ni~-g~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 312 (342)
T 2hrz_A 236 ASPRSAVGFLIHGAMIDVEK--VGPRRNLSMP-GLSATVGEQIEALRKVAGEKAVALIRREPNEMIMRMCEGWAPGFEAK 312 (342)
T ss_dssp ECHHHHHHHHHHHHHSCHHH--HCSCCEEECC-CEEEEHHHHHHHHHHHHCHHHHTTEEECCCHHHHHHHTTSCCCBCCH
T ss_pred EehHHHHHHHHHHHhccccc--cCCccEEEcC-CCCCCHHHHHHHHHHHcCcccccceeeccCcchhhhhcccccccChH
Confidence 99999999999998765210 0134899996 4679999999999999997652 2222221100 1112357999
Q ss_pred HHHHhcCCCccCcHHHHHHHHHHHHH
Q 012176 415 LAYKDFGYKPTTDLAAGLRKFVKWYV 440 (469)
Q Consensus 415 ka~~~LG~~p~~~l~~~l~~~v~~~~ 440 (469)
|+++ |||+|.++++++|+++++||+
T Consensus 313 k~~~-lG~~p~~~l~e~l~~~~~~~~ 337 (342)
T 2hrz_A 313 RARE-LGFTAESSFEEIIQVHIEDEL 337 (342)
T ss_dssp HHHH-TTCCCCSSHHHHHHHHHHHHS
T ss_pred HHHH-cCCCCCCCHHHHHHHHHHHhc
Confidence 9998 999999999999999999996
|
| >2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase, oxidoreductase, SDR, cardenolides, cardiac glycosides; HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-39 Score=323.63 Aligned_cols=296 Identities=15% Similarity=0.140 Sum_probs=236.4
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHCC-----CcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccC
Q 012176 118 GMTVLVTGAAGFVGSHCSLALKKRG-----DGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV 192 (469)
Q Consensus 118 ~~~VlVtGatG~IG~~l~~~L~~~G-----~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~ 192 (469)
+|+||||||+||||++|+++|+++| ++|++++|...... ....+++++.+|++|.+.+.+++++.
T Consensus 1 ~~~vlVtGatG~iG~~l~~~L~~~g~~~~~~~V~~~~r~~~~~~----------~~~~~~~~~~~Dl~d~~~~~~~~~~~ 70 (364)
T 2v6g_A 1 SSVALIVGVTGIIGNSLAEILPLADTPGGPWKVYGVARRTRPAW----------HEDNPINYVQCDISDPDDSQAKLSPL 70 (364)
T ss_dssp CEEEEEETTTSHHHHHHHHHTTSTTCTTCSEEEEEEESSCCCSC----------CCSSCCEEEECCTTSHHHHHHHHTTC
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCCCCCCceEEEEEeCCCCccc----------cccCceEEEEeecCCHHHHHHHHhcC
Confidence 4789999999999999999999999 99999999765322 12357899999999999999999985
Q ss_pred C-ccEEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhc--CCCCeEE-------EEcCccccCCC--CCCCCCCC
Q 012176 193 P-FTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSV--NPQPSIV-------WASSSSVYGLN--TQVPFSES 260 (469)
Q Consensus 193 ~-~d~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~--~~~~~~V-------~~SS~~vyg~~--~~~~~~E~ 260 (469)
+ +|+|||+||... .++...+++|+.++.+++++|++. +++ +|| |+||.++||.. ...+++|+
T Consensus 71 ~~~d~vih~a~~~~-----~~~~~~~~~n~~~~~~l~~a~~~~~~~~~-~~v~~~g~~i~~Ss~~vyg~~~~~~~~~~E~ 144 (364)
T 2v6g_A 71 TDVTHVFYVTWANR-----STEQENCEANSKMFRNVLDAVIPNCPNLK-HISLQTGRKHYMGPFESYGKIESHDPPYTED 144 (364)
T ss_dssp TTCCEEEECCCCCC-----SSHHHHHHHHHHHHHHHHHHHTTTCTTCC-EEEEECCTHHHHCCGGGTTTSCCCCSSBCTT
T ss_pred CCCCEEEECCCCCc-----chHHHHHHHhHHHHHHHHHHHHHhccccc-eEEeccCceEEEechhhccccccCCCCCCcc
Confidence 4 699999999753 467889999999999999999988 665 887 89999999875 34588888
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHhC-CcEEEEeecceecCCCCC--CChHHH-HHHHH--HcCCceEEEeeCCCC-
Q 012176 261 HRTDQPASLYAATKKAGEEIAHTYNHIYG-LALTGLRFFTVYGPWGRP--DMAYFF-FTKDI--LQGKTIDVYKTQDDR- 333 (469)
Q Consensus 261 ~~~~~p~~~Y~~sK~~~E~~~~~~~~~~g-i~~~ilRp~~v~Gp~~~~--~~~~~~-~~~~~--~~g~~~~~~~~~~~~- 333 (469)
++...+.+.| +.+|.++++++++++ ++++++||+.||||+... ...+.. +++.+ ..|.++.++ +++
T Consensus 145 ~~~~~~~~~y----~~~E~~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~---g~~~ 217 (364)
T 2v6g_A 145 LPRLKYMNFY----YDLEDIMLEEVEKKEGLTWSVHRPGNIFGFSPYSMMNLVGTLCVYAAICKHEGKVLRFT---GCKA 217 (364)
T ss_dssp SCCCSSCCHH----HHHHHHHHHHHTTSTTCEEEEEEESSEECCCTTCSSCHHHHHHHHHHHHHHHTCCBCCC---SCHH
T ss_pred ccCCccchhh----HHHHHHHHHHhhcCCCceEEEECCCceeCCCCCcccchHHHHHHHHHHHHhcCCceecC---CCcc
Confidence 8763336778 458999999887777 999999999999997753 222334 34444 367777666 455
Q ss_pred --cceEecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCCcccHHHHHHHHHHHhCCCccce--eecCC--------
Q 012176 334 --EVARDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKH--VIRMP-------- 401 (469)
Q Consensus 334 --~~~~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~~vt~~el~~~i~~~~g~~~~~~--~~~~~-------- 401 (469)
....+++|++|+|++++.+++++ ...+++||+++++++|+.|+++.+.+.+|.+.... ..|.+
T Consensus 218 ~~~~~~~~~~v~Dva~a~~~~~~~~-----~~~g~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~p~~~~~~~~~~ 292 (364)
T 2v6g_A 218 AWDGYSDCSDADLIAEHHIWAAVDP-----YAKNEAFNVSNGDVFKWKHFWKVLAEQFGVECGEYEEGVDLKLQDLMKGK 292 (364)
T ss_dssp HHHSCBCCEEHHHHHHHHHHHHHCG-----GGTTEEEEECCSCCBCHHHHHHHHHHHHTCCBCCCCTTCCCCHHHHTTTC
T ss_pred cccccCCCCcHHHHHHHHHHHHhCC-----CCCCceEEecCCCcCCHHHHHHHHHHHhCCCCCCCCCCCCccHHHHHhhh
Confidence 34578899999999999999865 23458999999999999999999999999876543 23321
Q ss_pred -------------CCC---CC-----------Cc-ccCChHHHHHhcCCCccCcHHHHHHHHHHHHHHH
Q 012176 402 -------------RNG---DV-----------PY-THANVSLAYKDFGYKPTTDLAAGLRKFVKWYVSY 442 (469)
Q Consensus 402 -------------~~~---~~-----------~~-~~~d~~ka~~~LG~~p~~~l~~~l~~~v~~~~~~ 442 (469)
... +. .. ..+|++|+++ |||+|.++++++|+++++||++.
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~-lG~~p~~~~~e~l~~~~~~~~~~ 360 (364)
T 2v6g_A 293 EPVWEEIVRENGLTPTKLKDVGIWWFGDVILGNECFLDSMNKSKE-HGFLGFRNSKNAFISWIDKAKAY 360 (364)
T ss_dssp HHHHHHHHHHTTCCCCCHHHHCCHHHHHHHHTSCCCCBCCHHHHH-TTCCCCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCccccccccccchhhhccccchhhcchHHHHh-cCCCCCCCHHHHHHHHHHHHHHc
Confidence 011 10 23 4789999987 99999999999999999999764
|
| >3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-39 Score=311.40 Aligned_cols=269 Identities=16% Similarity=0.156 Sum_probs=219.1
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCccEE
Q 012176 118 GMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTHV 197 (469)
Q Consensus 118 ~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~d~V 197 (469)
+|+|||||| ||||++|+++|+++|++|++++|.... . ..+...+++++.+|+.|.+ ++++ |+|
T Consensus 5 ~~~ilVtGa-G~iG~~l~~~L~~~g~~V~~~~r~~~~----~-----~~~~~~~~~~~~~D~~d~~-----~~~~--d~v 67 (286)
T 3ius_A 5 TGTLLSFGH-GYTARVLSRALAPQGWRIIGTSRNPDQ----M-----EAIRASGAEPLLWPGEEPS-----LDGV--THL 67 (286)
T ss_dssp CCEEEEETC-CHHHHHHHHHHGGGTCEEEEEESCGGG----H-----HHHHHTTEEEEESSSSCCC-----CTTC--CEE
T ss_pred cCcEEEECC-cHHHHHHHHHHHHCCCEEEEEEcChhh----h-----hhHhhCCCeEEEecccccc-----cCCC--CEE
Confidence 479999998 999999999999999999999995431 1 1122358999999999944 5555 999
Q ss_pred EEcccccChhhhccChHHHHHHHHHHHHHHHHHHHh--cCCCCeEEEEcCccccCCCCCCCCCCCCCCCCCCChHHHHHH
Q 012176 198 LHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKS--VNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKK 275 (469)
Q Consensus 198 ih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~--~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y~~sK~ 275 (469)
||+|+..... + ..+.+++++|++ .+++ +|||+||.++||.....+++|+++. .|.+.|+.+|.
T Consensus 68 i~~a~~~~~~----~---------~~~~~l~~a~~~~~~~~~-~~v~~Ss~~vyg~~~~~~~~E~~~~-~p~~~Y~~sK~ 132 (286)
T 3ius_A 68 LISTAPDSGG----D---------PVLAALGDQIAARAAQFR-WVGYLSTTAVYGDHDGAWVDETTPL-TPTAARGRWRV 132 (286)
T ss_dssp EECCCCBTTB----C---------HHHHHHHHHHHHTGGGCS-EEEEEEEGGGGCCCTTCEECTTSCC-CCCSHHHHHHH
T ss_pred EECCCccccc----c---------HHHHHHHHHHHhhcCCce-EEEEeecceecCCCCCCCcCCCCCC-CCCCHHHHHHH
Confidence 9999974321 1 135789999988 6666 9999999999998887789999887 78899999999
Q ss_pred HHHHHHHHHHHHhCCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceEecccHHHHHHHHHHHhcc
Q 012176 276 AGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGATGS 355 (469)
Q Consensus 276 ~~E~~~~~~~~~~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~~~~~~~~~ 355 (469)
++|++++.+ ++++++++||++||||+... +..+..|.++.+. + +++.++|+|++|+|++++.++++
T Consensus 133 ~~E~~~~~~---~~~~~~ilRp~~v~G~~~~~-------~~~~~~~~~~~~~---~-~~~~~~~i~v~Dva~a~~~~~~~ 198 (286)
T 3ius_A 133 MAEQQWQAV---PNLPLHVFRLAGIYGPGRGP-------FSKLGKGGIRRII---K-PGQVFSRIHVEDIAQVLAASMAR 198 (286)
T ss_dssp HHHHHHHHS---TTCCEEEEEECEEEBTTBSS-------STTSSSSCCCEEE---C-TTCCBCEEEHHHHHHHHHHHHHS
T ss_pred HHHHHHHhh---cCCCEEEEeccceECCCchH-------HHHHhcCCccccC---C-CCcccceEEHHHHHHHHHHHHhC
Confidence 999999997 59999999999999997653 2345667777776 2 35789999999999999999988
Q ss_pred CCCCCCCCCceEEEeCCCCcccHHHHHHHHHHHhCCCccceeec-CCCCCC------CCcccCChHHHHHhcCCCccC-c
Q 012176 356 GGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIR-MPRNGD------VPYTHANVSLAYKDFGYKPTT-D 427 (469)
Q Consensus 356 ~~~~~~~~~~~iyni~~~~~vt~~el~~~i~~~~g~~~~~~~~~-~~~~~~------~~~~~~d~~ka~~~LG~~p~~-~ 427 (469)
+. .+++||+++++++|+.|+++.+.+.+|.+....... ....++ .....+|++|++++|||+|++ +
T Consensus 199 ~~------~g~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~p~ 272 (286)
T 3ius_A 199 PD------PGAVYNVCDDEPVPPQDVIAYAAELQGLPLPPAVDFDKADLTPMARSFYSENKRVRNDRIKEELGVRLKYPN 272 (286)
T ss_dssp CC------TTCEEEECCSCCBCHHHHHHHHHHHHTCCCCCEEEGGGSCCCHHHHHTTSCCCEECCHHHHHTTCCCCSCSS
T ss_pred CC------CCCEEEEeCCCCccHHHHHHHHHHHcCCCCCcccchhhhccChhHHHhhcCCceeehHHHHHHhCCCCCcCC
Confidence 63 348999999999999999999999999886543322 112222 245678999999999999999 7
Q ss_pred HHHHHHHHHHH
Q 012176 428 LAAGLRKFVKW 438 (469)
Q Consensus 428 l~~~l~~~v~~ 438 (469)
++++|+++++.
T Consensus 273 ~~e~l~~~~~~ 283 (286)
T 3ius_A 273 YRVGLEALQAD 283 (286)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHh
Confidence 99999999873
|
| >1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-39 Score=320.23 Aligned_cols=302 Identities=17% Similarity=0.161 Sum_probs=233.0
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHh--hccCCeEEE-EecCCCHHHHHHhhccC
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKL--LQKHQVFIV-EGDLNDAPLLTKLFDVV 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~v~~v-~~Dl~d~~~l~~~~~~~ 192 (469)
.++|+||||||+||||++|+++|+++|++|++++|.... ........ ....+++++ .+|++|.+.++++++++
T Consensus 9 ~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~----~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~ 84 (342)
T 1y1p_A 9 PEGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASK----LANLQKRWDAKYPGRFETAVVEDMLKQGAYDEVIKGA 84 (342)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHH----HHHHHHHHHHHSTTTEEEEECSCTTSTTTTTTTTTTC
T ss_pred CCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCccc----HHHHHHHhhccCCCceEEEEecCCcChHHHHHHHcCC
Confidence 567899999999999999999999999999999994321 11111111 012478888 89999999999999866
Q ss_pred CccEEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHh-cCCCCeEEEEcCccccCCCC----CCCCCCCCC-----
Q 012176 193 PFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKS-VNPQPSIVWASSSSVYGLNT----QVPFSESHR----- 262 (469)
Q Consensus 193 ~~d~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~-~~~~~~~V~~SS~~vyg~~~----~~~~~E~~~----- 262 (469)
|+||||||..... .++..++++|+.++.+++++|++ .+++ +|||+||.++|+... +.+++|+++
T Consensus 85 --d~vih~A~~~~~~---~~~~~~~~~n~~g~~~ll~~~~~~~~~~-~iv~~SS~~~~~~~~~~~~~~~~~E~~~~~~~~ 158 (342)
T 1y1p_A 85 --AGVAHIASVVSFS---NKYDEVVTPAIGGTLNALRAAAATPSVK-RFVLTSSTVSALIPKPNVEGIYLDEKSWNLESI 158 (342)
T ss_dssp --SEEEECCCCCSCC---SCHHHHHHHHHHHHHHHHHHHHTCTTCC-EEEEECCGGGTCCCCTTCCCCEECTTCCCHHHH
T ss_pred --CEEEEeCCCCCCC---CCHHHHHHHHHHHHHHHHHHHHhCCCCc-EEEEeccHHHhcCCCCCCCCcccCccccCchhh
Confidence 9999999975432 56788999999999999999985 5655 999999999986432 146777762
Q ss_pred ----------CCCCCChHHHHHHHHHHHHHHHHHHh--CCcEEEEeecceecCCCCCCC---hHHHHHHHHHcCCceEEE
Q 012176 263 ----------TDQPASLYAATKKAGEEIAHTYNHIY--GLALTGLRFFTVYGPWGRPDM---AYFFFTKDILQGKTIDVY 327 (469)
Q Consensus 263 ----------~~~p~~~Y~~sK~~~E~~~~~~~~~~--gi~~~ilRp~~v~Gp~~~~~~---~~~~~~~~~~~g~~~~~~ 327 (469)
+..|.+.|+.+|.++|.+++.++.++ +++++++||++||||...+.. .+..++..+..|+++.++
T Consensus 159 ~~~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~~~rp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (342)
T 1y1p_A 159 DKAKTLPESDPQKSLWVYAASKTEAELAAWKFMDENKPHFTLNAVLPNYTIGTIFDPETQSGSTSGWMMSLFNGEVSPAL 238 (342)
T ss_dssp HHHHHSCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHCCSSEEEEEEESEEECCCSCTTTCCCHHHHHHHHHHTTCCCHHH
T ss_pred hhhccccccccccchHHHHHHHHHHHHHHHHHHHhcCCCceEEEEcCCceECCCCCCCCCCccHHHHHHHHHcCCCcccc
Confidence 11355789999999999999998876 789999999999999765432 677888889999887655
Q ss_pred eeCCCCcceEecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCCcccHHHHHHHHHHHhCCCccceeecCCCCCCCC
Q 012176 328 KTQDDREVARDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRNGDVP 407 (469)
Q Consensus 328 ~~~~~~~~~~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~~vt~~el~~~i~~~~g~~~~~~~~~~~~~~~~~ 407 (469)
+++ +.++|+|++|+|++++.+++++. ..++.| ++++.++|+.|+++.+.+.+|.+ .+. .+.+.. ...
T Consensus 239 ---~~~-~~~~~v~v~Dva~a~~~~~~~~~-----~~g~~~-~~~g~~~s~~e~~~~i~~~~~~~-~~~-~~~~~~-~~~ 305 (342)
T 1y1p_A 239 ---ALM-PPQYYVSAVDIGLLHLGCLVLPQ-----IERRRV-YGTAGTFDWNTVLATFRKLYPSK-TFP-ADFPDQ-GQD 305 (342)
T ss_dssp ---HTC-CSEEEEEHHHHHHHHHHHHHCTT-----CCSCEE-EECCEEECHHHHHHHHHHHCTTS-CCC-CCCCCC-CCC
T ss_pred ---ccC-CcCCEeEHHHHHHHHHHHHcCcc-----cCCceE-EEeCCCCCHHHHHHHHHHHCCCc-cCC-CCCCcc-ccc
Confidence 223 67899999999999999987642 223444 34556799999999999999975 211 111111 122
Q ss_pred cccCChHHHHHhcCC---CccCcHHHHHHHHHHHHH
Q 012176 408 YTHANVSLAYKDFGY---KPTTDLAAGLRKFVKWYV 440 (469)
Q Consensus 408 ~~~~d~~ka~~~LG~---~p~~~l~~~l~~~v~~~~ 440 (469)
...+|++|++++||| .+.++++++|+++++||+
T Consensus 306 ~~~~d~~k~~~~lg~~~~~~~~~l~~~l~~~~~~~~ 341 (342)
T 1y1p_A 306 LSKFDTAPSLEILKSLGRPGWRSIEESIKDLVGSET 341 (342)
T ss_dssp CCEECCHHHHHHHHHTTCCSCCCHHHHHHHHHCCSC
T ss_pred cccCChHHHHHHHhhcccCCcCCHHHHHHHHHHHhh
Confidence 366799999999887 566799999999999873
|
| >2p4h_X Vestitone reductase; NADPH-dependent reductase, isoflavonoid, plant protein; 1.40A {Medicago sativa} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-38 Score=311.88 Aligned_cols=303 Identities=17% Similarity=0.194 Sum_probs=214.0
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeC-CCCCCChhHHHHHHHhh-ccCCeEEEEecCCCHHHHHHhhccCCcc
Q 012176 118 GMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDN-FNSYYDPSLKRARQKLL-QKHQVFIVEGDLNDAPLLTKLFDVVPFT 195 (469)
Q Consensus 118 ~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r-~~~~~~~~~~~~~~~~~-~~~~v~~v~~Dl~d~~~l~~~~~~~~~d 195 (469)
+|+||||||+||||++|+++|+++|++|++++| ....... .... .... ...+++++.+|++|.+.++++++++ |
T Consensus 1 ~k~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~-~~~~-~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~--d 76 (322)
T 2p4h_X 1 KGRVCVTGGTGFLGSWIIKSLLENGYSVNTTIRADPERKRD-VSFL-TNLPGASEKLHFFNADLSNPDSFAAAIEGC--V 76 (322)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTCEEEEECCCC----CC-CHHH-HTSTTHHHHEEECCCCTTCGGGGHHHHTTC--S
T ss_pred CCEEEEECChhHHHHHHHHHHHHCCCEEEEEEeCCccchhH-HHHH-HhhhccCCceEEEecCCCCHHHHHHHHcCC--C
Confidence 478999999999999999999999999999998 4321111 0110 0100 0125788999999999999999987 9
Q ss_pred EEEEcccccChhhhccCh-HHHHHHHHHHHHHHHHHHHhc-CCCCeEEEEcCcccc-CCC-CCCCCCCCCCCC-------
Q 012176 196 HVLHLAAQAGVRYAMQNP-QSYVASNIAGFVNLLEVCKSV-NPQPSIVWASSSSVY-GLN-TQVPFSESHRTD------- 264 (469)
Q Consensus 196 ~Vih~Aa~~~~~~~~~~~-~~~~~~Nv~~~~~ll~aa~~~-~~~~~~V~~SS~~vy-g~~-~~~~~~E~~~~~------- 264 (469)
+|||+|+.. .....++ +.++++|+.|+.+++++|++. +++ +|||+||.+++ +.. ...+++|+++..
T Consensus 77 ~vih~A~~~--~~~~~~~~~~~~~~nv~gt~~l~~aa~~~~~~~-~iV~~SS~~~~~~~~~~~~~~~e~~~~~~~~~~~~ 153 (322)
T 2p4h_X 77 GIFHTASPI--DFAVSEPEEIVTKRTVDGALGILKACVNSKTVK-RFIYTSSGSAVSFNGKDKDVLDESDWSDVDLLRSV 153 (322)
T ss_dssp EEEECCCCC----------CHHHHHHHHHHHHHHHHHTTCSSCC-EEEEEEEGGGTSCSSSCCSEECTTCCCCHHHHHHH
T ss_pred EEEEcCCcc--cCCCCChHHHHHHHHHHHHHHHHHHHHhcCCcc-EEEEeccHHHcccCCCCCeecCCccccchhhhccc
Confidence 999999753 2233333 458999999999999999988 665 99999998754 322 223566665321
Q ss_pred CCCC-hHHHHHHHHHHHHHHHHHHhCCcEEEEeecceecCCCCCCCh-HHHHHHHHHcCCceEEEeeCCCCcceEecccH
Q 012176 265 QPAS-LYAATKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPDMA-YFFFTKDILQGKTIDVYKTQDDREVARDFTYI 342 (469)
Q Consensus 265 ~p~~-~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~Gp~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v 342 (469)
.|.. .|+.+|.++|.++.++++.+|++++++||++||||+...... ....+.....|....+. ...++|+|+
T Consensus 154 ~p~~~~Y~~sK~~~e~~~~~~~~~~gi~~~~lrp~~v~g~~~~~~~~~~~~~~~~~~~g~~~~~~------~~~~~~i~v 227 (322)
T 2p4h_X 154 KPFGWNYAVSKTLAEKAVLEFGEQNGIDVVTLILPFIVGRFVCPKLPDSIEKALVLVLGKKEQIG------VTRFHMVHV 227 (322)
T ss_dssp CCTTHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECEEESCCCSSSCCHHHHHHTHHHHSCGGGCC------EEEEEEEEH
T ss_pred CcccccHHHHHHHHHHHHHHHHHhcCCcEEEEcCCceECCCCCCCCCchHHHHHHHHhCCCccCc------CCCcCEEEH
Confidence 1233 699999999999999988789999999999999997653221 11111223445543221 134599999
Q ss_pred HHHHHHHHHHhccCCCCCCCCCceEEEeCCCCcccHHHHHHHHHHHhCCC-ccceeecCCCCCCCCcccCChHHHHHhcC
Q 012176 343 DDVVKGCVGATGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTK-AKKHVIRMPRNGDVPYTHANVSLAYKDFG 421 (469)
Q Consensus 343 ~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~~vt~~el~~~i~~~~g~~-~~~~~~~~~~~~~~~~~~~d~~ka~~~LG 421 (469)
+|+|++++.+++++. .. +.|| ++++++|+.|+++.+.+.++.. .+......+.... ....+|++|+ ++||
T Consensus 228 ~Dva~a~~~~~~~~~-----~~-g~~~-~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~d~~k~-~~lG 298 (322)
T 2p4h_X 228 DDVARAHIYLLENSV-----PG-GRYN-CSPFIVPIEEMSQLLSAKYPEYQILTVDELKEIKGA-RLPDLNTKKL-VDAG 298 (322)
T ss_dssp HHHHHHHHHHHHSCC-----CC-EEEE-CCCEEEEHHHHHHHHHHHCTTSCCCCTTTTTTCCCE-ECCEECCHHH-HHTT
T ss_pred HHHHHHHHHHhhCcC-----CC-CCEE-EcCCCCCHHHHHHHHHHhCCCCCCCCCccccCCCCC-cceecccHHH-HHhC
Confidence 999999999997642 22 4588 5567899999999999887531 1100000001111 3467899999 6799
Q ss_pred CCccCcHHHHHHHHHHHHHHH
Q 012176 422 YKPTTDLAAGLRKFVKWYVSY 442 (469)
Q Consensus 422 ~~p~~~l~~~l~~~v~~~~~~ 442 (469)
|+|+++++++|+++++||++.
T Consensus 299 ~~p~~~~~~~l~~~~~~~~~~ 319 (322)
T 2p4h_X 299 FDFKYTIEDMFDDAIQCCKEK 319 (322)
T ss_dssp CCCCCCHHHHHHHHHHHHHHH
T ss_pred CccCCCHHHHHHHHHHHHHhc
Confidence 999999999999999999764
|
| >2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase reductase, NADPH, dihydroquercetin, rossmann fold, oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera} PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.4e-38 Score=310.99 Aligned_cols=304 Identities=18% Similarity=0.227 Sum_probs=219.1
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhc-cCCeEEEEecCCCHHHHHHhhccCCcc
Q 012176 117 NGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQ-KHQVFIVEGDLNDAPLLTKLFDVVPFT 195 (469)
Q Consensus 117 ~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~v~~v~~Dl~d~~~l~~~~~~~~~d 195 (469)
++|+||||||+||||++|+++|+++|++|++++|+..... ... ....... ..+++++.+|++|.+.++++++++ |
T Consensus 4 ~~~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~~~-~~~-~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~--d 79 (337)
T 2c29_D 4 QSETVCVTGASGFIGSWLVMRLLERGYTVRATVRDPTNVK-KVK-HLLDLPKAETHLTLWKADLADEGSFDEAIKGC--T 79 (337)
T ss_dssp --CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCTTCHH-HHH-HHHTSTTHHHHEEEEECCTTSTTTTHHHHTTC--S
T ss_pred CCCEEEEECCchHHHHHHHHHHHHCCCEEEEEECCcchhH-HHH-HHHhcccCCCeEEEEEcCCCCHHHHHHHHcCC--C
Confidence 5689999999999999999999999999999998653110 000 0001100 126889999999999999999987 9
Q ss_pred EEEEcccccChhhhccChH-HHHHHHHHHHHHHHHHHHhcC-CCCeEEEEcCcc-ccCCCC-CCCCCCCCCCC-------
Q 012176 196 HVLHLAAQAGVRYAMQNPQ-SYVASNIAGFVNLLEVCKSVN-PQPSIVWASSSS-VYGLNT-QVPFSESHRTD------- 264 (469)
Q Consensus 196 ~Vih~Aa~~~~~~~~~~~~-~~~~~Nv~~~~~ll~aa~~~~-~~~~~V~~SS~~-vyg~~~-~~~~~E~~~~~------- 264 (469)
+|||+|+... ....++. .++++|+.|+.+++++|++.+ ++ +|||+||.+ +|+... ..+++|+++..
T Consensus 80 ~Vih~A~~~~--~~~~~~~~~~~~~nv~gt~~ll~a~~~~~~~~-riV~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~~~ 156 (337)
T 2c29_D 80 GVFHVATPMD--FESKDPENEVIKPTIEGMLGIMKSCAAAKTVR-RLVFTSSAGTVNIQEHQLPVYDESCWSDMEFCRAK 156 (337)
T ss_dssp EEEECCCCCC--SSCSSHHHHTHHHHHHHHHHHHHHHHHHSCCC-EEEEECCGGGTSCSSSCCSEECTTCCCCHHHHHHH
T ss_pred EEEEeccccC--CCCCChHHHHHHHHHHHHHHHHHHHHhCCCcc-EEEEeeeHhhcccCCCCCcccCcccCCchhhhccc
Confidence 9999998642 2223443 588999999999999999887 55 999999987 454322 23466665321
Q ss_pred -CCCChHHHHHHHHHHHHHHHHHHhCCcEEEEeecceecCCCCCCChHHHHHH--HHHcCCceEEEeeCCCCcceEeccc
Q 012176 265 -QPASLYAATKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTK--DILQGKTIDVYKTQDDREVARDFTY 341 (469)
Q Consensus 265 -~p~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~v~ 341 (469)
.+.+.|+.+|.++|.++..+++.+|+++++|||++||||+...... ..+.. ....|.+.. +. ......|+|
T Consensus 157 ~~~~~~Y~~sK~~~E~~~~~~~~~~gi~~~~lrp~~v~Gp~~~~~~~-~~~~~~~~~~~g~~~~-~~----~~~~~~~i~ 230 (337)
T 2c29_D 157 KMTAWMYFVSKTLAEQAAWKYAKENNIDFITIIPTLVVGPFIMSSMP-PSLITALSPITGNEAH-YS----IIRQGQFVH 230 (337)
T ss_dssp CCTTHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECEEESCCSCSSCC-HHHHHHTHHHHTCGGG-HH----HHTEEEEEE
T ss_pred CCccchHHHHHHHHHHHHHHHHHHcCCcEEEEeCCceECCCCCCCCC-chHHHHHHHHcCCCcc-cc----ccCCCCEEE
Confidence 1445799999999999999987789999999999999997654321 11111 123344321 11 112345999
Q ss_pred HHHHHHHHHHHhccCCCCCCCCCceEEEeCCCCcccHHHHHHHHHHHhCC-CccceeecCCCCCCCCcccCChHHHHHhc
Q 012176 342 IDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNT-KAKKHVIRMPRNGDVPYTHANVSLAYKDF 420 (469)
Q Consensus 342 v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~~vt~~el~~~i~~~~g~-~~~~~~~~~~~~~~~~~~~~d~~ka~~~L 420 (469)
++|+|++++.+++++. .++.|+++++ .+|+.|+++.+.+.++. +.+.... +...+.....+|++|+ ++|
T Consensus 231 v~Dva~a~~~~~~~~~------~~~~~~~~~~-~~s~~e~~~~i~~~~~~~~~~~~~~--~~~~~~~~~~~d~~k~-~~l 300 (337)
T 2c29_D 231 LDDLCNAHIYLFENPK------AEGRYICSSH-DCIILDLAKMLREKYPEYNIPTEFK--GVDENLKSVCFSSKKL-TDL 300 (337)
T ss_dssp HHHHHHHHHHHHHCTT------CCEEEEECCE-EEEHHHHHHHHHHHCTTSCCCSCCT--TCCTTCCCCEECCHHH-HHH
T ss_pred HHHHHHHHHHHhcCcc------cCceEEEeCC-CCCHHHHHHHHHHHCCCccCCCCCC--cccCCCccccccHHHH-HHc
Confidence 9999999999987642 1367877664 58999999999998743 2111111 1122445567899999 789
Q ss_pred CCCccCcHHHHHHHHHHHHHHHc
Q 012176 421 GYKPTTDLAAGLRKFVKWYVSYY 443 (469)
Q Consensus 421 G~~p~~~l~~~l~~~v~~~~~~~ 443 (469)
||+|+++++++|+++++||++..
T Consensus 301 G~~p~~~l~e~l~~~~~~~~~~~ 323 (337)
T 2c29_D 301 GFEFKYSLEDMFTGAVDTCRAKG 323 (337)
T ss_dssp TCCCCCCHHHHHHHHHHHHHHTT
T ss_pred CCCcCCCHHHHHHHHHHHHHHcC
Confidence 99999999999999999997653
|
| >2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis vinifera} PDB: 3hfs_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-38 Score=316.96 Aligned_cols=307 Identities=17% Similarity=0.164 Sum_probs=216.3
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCccEE
Q 012176 118 GMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTHV 197 (469)
Q Consensus 118 ~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~d~V 197 (469)
+|+||||||+||||++|+++|+++|++|++++|+....... ... .......+++++.+|++|.+.+.++++++ |+|
T Consensus 9 ~~~vlVTGatGfIG~~l~~~Ll~~G~~V~~~~r~~~~~~~~-~~~-~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~--D~V 84 (338)
T 2rh8_A 9 KKTACVVGGTGFVASLLVKLLLQKGYAVNTTVRDPDNQKKV-SHL-LELQELGDLKIFRADLTDELSFEAPIAGC--DFV 84 (338)
T ss_dssp CCEEEEECTTSHHHHHHHHHHHHTTCEEEEEESCTTCTTTT-HHH-HHHGGGSCEEEEECCTTTSSSSHHHHTTC--SEE
T ss_pred CCEEEEECCchHHHHHHHHHHHHCCCEEEEEEcCcchhhhH-HHH-HhcCCCCcEEEEecCCCChHHHHHHHcCC--CEE
Confidence 68999999999999999999999999999999865432211 110 11112347899999999999999999887 999
Q ss_pred EEcccccChhhhccCh-HHHHHHHHHHHHHHHHHHHhcC-CCCeEEEEcCcc-ccCCC---CCCCCCCCCCCC-------
Q 012176 198 LHLAAQAGVRYAMQNP-QSYVASNIAGFVNLLEVCKSVN-PQPSIVWASSSS-VYGLN---TQVPFSESHRTD------- 264 (469)
Q Consensus 198 ih~Aa~~~~~~~~~~~-~~~~~~Nv~~~~~ll~aa~~~~-~~~~~V~~SS~~-vyg~~---~~~~~~E~~~~~------- 264 (469)
||+||.... ...++ +.++++|+.|+.+++++|++.+ ++ +|||+||.+ +|+.. ...+++|+++..
T Consensus 85 ih~A~~~~~--~~~~~~~~~~~~nv~gt~~ll~aa~~~~~v~-r~V~~SS~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~ 161 (338)
T 2rh8_A 85 FHVATPVHF--ASEDPENDMIKPAIQGVVNVMKACTRAKSVK-RVILTSSAAAVTINQLDGTGLVVDEKNWTDIEFLTSA 161 (338)
T ss_dssp EEESSCCCC-----------CHHHHHHHHHHHHHHHHCTTCC-EEEEECCHHHHHHHHHTCSCCCCCTTTTTCC------
T ss_pred EEeCCccCC--CCCCcHHHHHHHHHHHHHHHHHHHHHcCCcC-EEEEEecHHHeecCCcCCCCcccChhhccchhhcccc
Confidence 999987432 22334 3488999999999999999986 65 999999987 44321 113677775321
Q ss_pred CC-CChHHHHHHHHHHHHHHHHHHhCCcEEEEeecceecCCCCCCCh-HHHHHHHHHcCCceEEEeeCC--CCcceEecc
Q 012176 265 QP-ASLYAATKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPDMA-YFFFTKDILQGKTIDVYKTQD--DREVARDFT 340 (469)
Q Consensus 265 ~p-~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~Gp~~~~~~~-~~~~~~~~~~g~~~~~~~~~~--~~~~~~~~v 340 (469)
.| ...|+.+|.++|.++..+.+.+|+++++|||++||||+...... ....+.....|.+..+....+ .+...++|+
T Consensus 162 ~~~~~~Y~~sK~~~E~~~~~~~~~~gi~~~~lrp~~v~Gp~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i 241 (338)
T 2rh8_A 162 KPPTWGYPASKTLAEKAAWKFAEENNIDLITVIPTLMAGSSLTSDVPSSIGLAMSLITGNEFLINGMKGMQMLSGSVSIA 241 (338)
T ss_dssp -CCCCCCTTSCCHHHHHHHHHHHHHTCCEEEEEECEEESCCSSSSCCHHHHHHHHHHHTCHHHHHHHHHHHHHHSSEEEE
T ss_pred CCccchHHHHHHHHHHHHHHHHHHcCCcEEEEeCCceECCCCCCCCCchHHHHHHHHcCCccccccccccccccCcccEE
Confidence 11 22699999999999999988789999999999999997654321 111122224454321100000 012235899
Q ss_pred cHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCCcccHHHHHHHHHHHhCC-CccceeecCCCCCCCCcccCChHHHHHh
Q 012176 341 YIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNT-KAKKHVIRMPRNGDVPYTHANVSLAYKD 419 (469)
Q Consensus 341 ~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~~vt~~el~~~i~~~~g~-~~~~~~~~~~~~~~~~~~~~d~~ka~~~ 419 (469)
|++|+|++++.+++++. .++.||++++ .+|+.|+++.+.+.++. +.+....+ ..++. ...+|++|+ ++
T Consensus 242 ~v~Dva~a~~~~~~~~~------~~~~~~~~~~-~~s~~e~~~~l~~~~~~~~~~~~~~~--~~~~~-~~~~d~~k~-~~ 310 (338)
T 2rh8_A 242 HVEDVCRAHIFVAEKES------ASGRYICCAA-NTSVPELAKFLSKRYPQYKVPTDFGD--FPPKS-KLIISSEKL-VK 310 (338)
T ss_dssp EHHHHHHHHHHHHHCTT------CCEEEEECSE-EECHHHHHHHHHHHCTTSCCCCCCTT--SCSSC-SCCCCCHHH-HH
T ss_pred EHHHHHHHHHHHHcCCC------cCCcEEEecC-CCCHHHHHHHHHHhCCCCCCCCCCCC--CCcCc-ceeechHHH-HH
Confidence 99999999999987642 1367888765 59999999999998763 21111111 11122 267899999 67
Q ss_pred cCCCccCcHHHHHHHHHHHHHHH
Q 012176 420 FGYKPTTDLAAGLRKFVKWYVSY 442 (469)
Q Consensus 420 LG~~p~~~l~~~l~~~v~~~~~~ 442 (469)
|||+|+++++++|+++++||++.
T Consensus 311 lG~~p~~~l~~gl~~~~~~~~~~ 333 (338)
T 2rh8_A 311 EGFSFKYGIEEIYDESVEYFKAK 333 (338)
T ss_dssp HTCCCSCCHHHHHHHHHHHHHHT
T ss_pred hCCCCCCCHHHHHHHHHHHHHHc
Confidence 99999999999999999999754
|
| >2ggs_A 273AA long hypothetical DTDP-4-dehydrorhamnose reductase; alpha, beta, oxidoreductase; HET: NDP; 1.70A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-36 Score=292.89 Aligned_cols=268 Identities=17% Similarity=0.129 Sum_probs=222.7
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCccEEE
Q 012176 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTHVL 198 (469)
Q Consensus 119 ~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~d~Vi 198 (469)
|+||||||+||||++++++|+ +|++|++++|..... .+ +.+|++|++.+.+++++.++|+||
T Consensus 1 m~ilVtGatG~iG~~l~~~L~-~g~~V~~~~r~~~~~--------------~~---~~~Dl~~~~~~~~~~~~~~~d~vi 62 (273)
T 2ggs_A 1 MRTLITGASGQLGIELSRLLS-ERHEVIKVYNSSEIQ--------------GG---YKLDLTDFPRLEDFIIKKRPDVII 62 (273)
T ss_dssp CCEEEETTTSHHHHHHHHHHT-TTSCEEEEESSSCCT--------------TC---EECCTTSHHHHHHHHHHHCCSEEE
T ss_pred CEEEEECCCChhHHHHHHHHh-cCCeEEEecCCCcCC--------------CC---ceeccCCHHHHHHHHHhcCCCEEE
Confidence 579999999999999999999 489999999965310 12 789999999999999885569999
Q ss_pred EcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcCccccCCCCCCCCCCCCCCCCCCChHHHHHHHHH
Q 012176 199 HLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGE 278 (469)
Q Consensus 199 h~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y~~sK~~~E 278 (469)
||||........++++..+++|+.++.+++++|++.+. +||++||.++|+.... +++|+++. .|.+.|+.+|.++|
T Consensus 63 ~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~iv~~SS~~~~~~~~~-~~~e~~~~-~~~~~Y~~sK~~~e 138 (273)
T 2ggs_A 63 NAAAMTDVDKCEIEKEKAYKINAEAVRHIVRAGKVIDS--YIVHISTDYVFDGEKG-NYKEEDIP-NPINYYGLSKLLGE 138 (273)
T ss_dssp ECCCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTC--EEEEEEEGGGSCSSSC-SBCTTSCC-CCSSHHHHHHHHHH
T ss_pred ECCcccChhhhhhCHHHHHHHhHHHHHHHHHHHHHhCC--eEEEEecceeEcCCCC-CcCCCCCC-CCCCHHHHHHHHHH
Confidence 99998766555678889999999999999999998874 8999999999986654 88888876 67889999999999
Q ss_pred HHHHHHHHHhCCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceEecccHHHHHHHHHHHhccCCC
Q 012176 279 EIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGATGSGGK 358 (469)
Q Consensus 279 ~~~~~~~~~~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~~~~~~~~~~~~ 358 (469)
.+++. ++++++||+.|||+ ..+...++..+..+.++.+. ++ .++++|++|+|++++.++.++.
T Consensus 139 ~~~~~------~~~~~iR~~~v~G~----~~~~~~~~~~~~~~~~~~~~-----~~-~~~~~~~~dva~~i~~~~~~~~- 201 (273)
T 2ggs_A 139 TFALQ------DDSLIIRTSGIFRN----KGFPIYVYKTLKEGKTVFAF-----KG-YYSPISARKLASAILELLELRK- 201 (273)
T ss_dssp HHHCC------TTCEEEEECCCBSS----SSHHHHHHHHHHTTCCEEEE-----SC-EECCCBHHHHHHHHHHHHHHTC-
T ss_pred HHHhC------CCeEEEeccccccc----cHHHHHHHHHHHcCCCEEee-----cC-CCCceEHHHHHHHHHHHHhcCc-
Confidence 98876 57899999999982 33556666777888888776 33 8999999999999999998652
Q ss_pred CCCCCCceEEEeCCCCcccHHHHHHHHHHHhCCCccceeecC---CCCCCCCcccCChHHHHHhcCCCc-cCcHHHHH
Q 012176 359 KRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRM---PRNGDVPYTHANVSLAYKDFGYKP-TTDLAAGL 432 (469)
Q Consensus 359 ~~~~~~~~iyni~~~~~vt~~el~~~i~~~~g~~~~~~~~~~---~~~~~~~~~~~d~~ka~~~LG~~p-~~~l~~~l 432 (469)
+++||+++ +.+|+.|+++.+.+.+|.+......+. ..........+|++|++++|||+| .++++++|
T Consensus 202 ------~g~~~i~~-~~~s~~e~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~~l~~~~ 272 (273)
T 2ggs_A 202 ------TGIIHVAG-ERISRFELALKIKEKFNLPGEVKEVDEVRGWIAKRPYDSSLDSSRARKILSTDFYTLDLDGMV 272 (273)
T ss_dssp ------CEEEECCC-CCEEHHHHHHHHHHHTTCCSCEEEESSCTTCCSCCCSBCCBCCHHHHHHCSSCCCSCCGGGCC
T ss_pred ------CCeEEECC-CcccHHHHHHHHHHHhCCChhhcccccccccccCCCcccccCHHHHHHHhCCCCCCccccccc
Confidence 27999999 999999999999999998865543211 112234567899999999999999 68888765
|
| >4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.8e-36 Score=291.88 Aligned_cols=275 Identities=17% Similarity=0.123 Sum_probs=213.0
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCccEEE
Q 012176 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTHVL 198 (469)
Q Consensus 119 ~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~d~Vi 198 (469)
|+|||||||||||++|+++|+++||+|++++|.+... . +.. .+...+.++++ |+||
T Consensus 1 MkILVTGatGfIG~~L~~~L~~~G~~V~~l~R~~~~~---------------~---~~~----~~~~~~~l~~~--d~vi 56 (298)
T 4b4o_A 1 MRVLVGGGTGFIGTALTQLLNARGHEVTLVSRKPGPG---------------R---ITW----DELAASGLPSC--DAAV 56 (298)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCTT---------------E---EEH----HHHHHHCCCSC--SEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCcC---------------e---eec----chhhHhhccCC--CEEE
Confidence 7899999999999999999999999999999954311 1 111 22334556666 9999
Q ss_pred EcccccCh----hhhccChHHHHHHHHHHHHHHHHHHHhcCCCC-eEEEEcCccccCCCCCCCCCCCCCCCCCCChHHHH
Q 012176 199 HLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCKSVNPQP-SIVWASSSSVYGLNTQVPFSESHRTDQPASLYAAT 273 (469)
Q Consensus 199 h~Aa~~~~----~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~-~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y~~s 273 (469)
|+|+..-. ++.....+.+.+.|+.+|.+|+++++..+.++ +||++||.++||.....+.+|+++. .+.+.|+..
T Consensus 57 hla~~~i~~~~~~~~~~~~~~~~~~~v~~t~~l~~~~~~~~~~~~~~i~~Ss~~vyg~~~~~~~~E~~p~-~~~~~~~~~ 135 (298)
T 4b4o_A 57 NLAGENILNPLRRWNETFQKEVLGSRLETTQLLAKAITKAPQPPKAWVLVTGVAYYQPSLTAEYDEDSPG-GDFDFFSNL 135 (298)
T ss_dssp ECCCCCSSCTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHCSSCCSEEEEEEEGGGSCCCSSCCBCTTCCC-SCSSHHHHH
T ss_pred EeccCcccchhhhhhhhhhhhhhhHHHHHHHHHHHHHHHhCCCceEEEEEeeeeeecCCCCCcccccCCc-cccchhHHH
Confidence 99985211 23334456788999999999999999887653 5899999999999988899999887 778889988
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceEecccHHHHHHHHHHHh
Q 012176 274 KKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGAT 353 (469)
Q Consensus 274 K~~~E~~~~~~~~~~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~~~~~~~ 353 (469)
|...|... +....+++++++||+.||||++. .+..+......+.... . +++++.++||||+|+|++++.++
T Consensus 136 ~~~~e~~~--~~~~~~~~~~~~r~~~v~g~~~~---~~~~~~~~~~~~~~~~-~---g~g~~~~~~ihv~Dva~a~~~~~ 206 (298)
T 4b4o_A 136 VTKWEAAA--RLPGDSTRQVVVRSGVVLGRGGG---AMGHMLLPFRLGLGGP-I---GSGHQFFPWIHIGDLAGILTHAL 206 (298)
T ss_dssp HHHHHHHH--CCSSSSSEEEEEEECEEECTTSH---HHHHHHHHHHTTCCCC-B---TTSCSBCCEEEHHHHHHHHHHHH
T ss_pred HHHHHHHH--HhhccCCceeeeeeeeEEcCCCC---chhHHHHHHhcCCcce-e---cccCceeecCcHHHHHHHHHHHH
Confidence 88888643 33446899999999999999753 4555666666665443 3 77999999999999999999999
Q ss_pred ccCCCCCCCCCceEEEeCCCCcccHHHHHHHHHHHhCCCccceeecCCCC------CCC------CcccCChHHHHHhcC
Q 012176 354 GSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRN------GDV------PYTHANVSLAYKDFG 421 (469)
Q Consensus 354 ~~~~~~~~~~~~~iyni~~~~~vt~~el~~~i~~~~g~~~~~~~~~~~~~------~~~------~~~~~d~~ka~~~LG 421 (469)
+++. ..++||+++++++|+.|+++.+++.+|++.. .|.|.. ++. ....+.++|++ ++|
T Consensus 207 ~~~~------~~g~yn~~~~~~~t~~e~~~~ia~~lgrp~~---~pvP~~~~~~~~g~~~~~~~l~~~rv~~~kl~-~~G 276 (298)
T 4b4o_A 207 EANH------VHGVLNGVAPSSATNAEFAQTFGAALGRRAF---IPLPSAVVQAVFGRQRAIMLLEGQKVIPRRTL-ATG 276 (298)
T ss_dssp HCTT------CCEEEEESCSCCCBHHHHHHHHHHHHTCCCC---CCBCHHHHHHHHCHHHHHHHHCCCCBCCHHHH-HTT
T ss_pred hCCC------CCCeEEEECCCccCHHHHHHHHHHHhCcCCc---ccCCHHHHHHHhcchhHHHhhCCCEEcHHHHH-HCC
Confidence 8863 2379999999999999999999999998752 333321 100 11235567775 699
Q ss_pred CCccC-cHHHHHHHHHH
Q 012176 422 YKPTT-DLAAGLRKFVK 437 (469)
Q Consensus 422 ~~p~~-~l~~~l~~~v~ 437 (469)
|++++ +++++|+++++
T Consensus 277 f~f~yp~l~~al~~l~~ 293 (298)
T 4b4o_A 277 YQYSFPELGAALKEIAE 293 (298)
T ss_dssp CCCSCCSHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHH
Confidence 99998 59999999987
|
| >3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-35 Score=310.37 Aligned_cols=282 Identities=17% Similarity=0.110 Sum_probs=211.9
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCccEE
Q 012176 118 GMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTHV 197 (469)
Q Consensus 118 ~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~d~V 197 (469)
+|+||||||+||||++|+++|+++|++|++++|..... ..+.+|+.|. +.++++++ |+|
T Consensus 147 ~m~VLVTGatG~IG~~l~~~L~~~G~~V~~l~R~~~~~-----------------~~v~~d~~~~--~~~~l~~~--D~V 205 (516)
T 3oh8_A 147 PLTVAITGSRGLVGRALTAQLQTGGHEVIQLVRKEPKP-----------------GKRFWDPLNP--ASDLLDGA--DVL 205 (516)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSSCCT-----------------TCEECCTTSC--CTTTTTTC--SEE
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCCc-----------------cceeecccch--hHHhcCCC--CEE
Confidence 78999999999999999999999999999999976521 1266787653 45666666 999
Q ss_pred EEcccccCh-hhhccChHHHHHHHHHHHHHHHHH-HHhcCCCCeEEEEcCccccC-CCCCCCCCCCCCCCCCCChHHHHH
Q 012176 198 LHLAAQAGV-RYAMQNPQSYVASNIAGFVNLLEV-CKSVNPQPSIVWASSSSVYG-LNTQVPFSESHRTDQPASLYAATK 274 (469)
Q Consensus 198 ih~Aa~~~~-~~~~~~~~~~~~~Nv~~~~~ll~a-a~~~~~~~~~V~~SS~~vyg-~~~~~~~~E~~~~~~p~~~Y~~sK 274 (469)
||+||.... .+...++..++++|+.++.+|+++ |++.+++ +|||+||.++|| .....+++|+++. +.+.|+.+|
T Consensus 206 ih~A~~~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~a~~~~~~-r~V~~SS~~vyg~~~~~~~~~E~~~~--~~~~y~~~~ 282 (516)
T 3oh8_A 206 VHLAGEPIFGRFNDSHKEAIRESRVLPTKFLAELVAESTQCT-TMISASAVGFYGHDRGDEILTEESES--GDDFLAEVC 282 (516)
T ss_dssp EECCCC-----CCGGGHHHHHHHTHHHHHHHHHHHHHCSSCC-EEEEEEEGGGGCSEEEEEEECTTSCC--CSSHHHHHH
T ss_pred EECCCCccccccchhHHHHHHHHHHHHHHHHHHHHHhcCCCC-EEEEeCcceEecCCCCCCccCCCCCC--CcChHHHHH
Confidence 999997533 344566778999999999999999 6666765 999999999999 4555578888875 778999999
Q ss_pred HHHHHHHHHHHHHhCCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceEecccHHHHHHHHHHHhc
Q 012176 275 KAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGATG 354 (469)
Q Consensus 275 ~~~E~~~~~~~~~~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~~~~~~~~ 354 (469)
..+|.++... ...|+++++|||++||||+. ..+..++..+..+... ++ +++++.++|+|++|+|++++.+++
T Consensus 283 ~~~E~~~~~~-~~~gi~~~ilRp~~v~Gp~~---~~~~~~~~~~~~g~~~-~~---g~g~~~~~~i~v~Dva~ai~~~l~ 354 (516)
T 3oh8_A 283 RDWEHATAPA-SDAGKRVAFIRTGVALSGRG---GMLPLLKTLFSTGLGG-KF---GDGTSWFSWIAIDDLTDIYYRAIV 354 (516)
T ss_dssp HHHHHTTHHH-HHTTCEEEEEEECEEEBTTB---SHHHHHHHTTC---CC-CC---TTSCCEECEEEHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HhCCCCEEEEEeeEEECCCC---ChHHHHHHHHHhCCCc-cc---CCCCceEceEeHHHHHHHHHHHHh
Confidence 9999876544 45699999999999999974 2555665555555443 33 678999999999999999999998
Q ss_pred cCCCCCCCCCceEEEeCCCCcccHHHHHHHHHHHhCCCccceeecCCC----CCCC-------CcccCChHHHHHhcCCC
Q 012176 355 SGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPR----NGDV-------PYTHANVSLAYKDFGYK 423 (469)
Q Consensus 355 ~~~~~~~~~~~~iyni~~~~~vt~~el~~~i~~~~g~~~~~~~~~~~~----~~~~-------~~~~~d~~ka~~~LG~~ 423 (469)
++. .+++||+++++++|+.|+++.+.+.+|.+. ...+|... .++. ....++++|++ +|||+
T Consensus 355 ~~~------~~g~~ni~~~~~~s~~el~~~i~~~~g~~~-~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~kl~-~lG~~ 426 (516)
T 3oh8_A 355 DAQ------ISGPINAVAPNPVSNADMTKILATSMHRPA-FIQIPSLGPKILLGSQGAEELALASQRTAPAALE-NLSHT 426 (516)
T ss_dssp CTT------CCEEEEESCSCCEEHHHHHHHTTC----------------------CCGGGGGGCEEEECCHHHH-HTTCC
T ss_pred Ccc------cCCcEEEECCCCCCHHHHHHHHHHHhCCCC-CCCCCHHHHHHHhCCchhHHHhhcCCeechHHHH-HCCCC
Confidence 763 237999999999999999999999999875 22222211 1222 12345778887 69999
Q ss_pred ccCc-HHHHHHHHHHHH
Q 012176 424 PTTD-LAAGLRKFVKWY 439 (469)
Q Consensus 424 p~~~-l~~~l~~~v~~~ 439 (469)
|+++ |+++|++++++.
T Consensus 427 ~~~~~l~e~l~~~l~~~ 443 (516)
T 3oh8_A 427 FRYTDIGAAIAHELGYE 443 (516)
T ss_dssp CSCSSHHHHHHHHHTCC
T ss_pred CCCCCHHHHHHHHhCcc
Confidence 9987 999999998854
|
| >4f6c_A AUSA reductase domain protein; thioester reductase, oxidoreductase; 2.81A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-34 Score=297.58 Aligned_cols=307 Identities=17% Similarity=0.217 Sum_probs=228.1
Q ss_pred CCCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHH----------hhccCCeEEEEecCCCHH
Q 012176 114 RRPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQK----------LLQKHQVFIVEGDLNDAP 183 (469)
Q Consensus 114 ~~~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~----------~~~~~~v~~v~~Dl~d~~ 183 (469)
....+|+||||||+||||++|+++|++.|++|++++|.....+ ...+.... .....++.++.+|++|++
T Consensus 65 ~~~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~-~~~~l~~~l~~~~~~~~~~~~~~~v~~v~~Dl~d~~ 143 (427)
T 4f6c_A 65 SHRPLGNTLLTGATGFLGAYLIEALQGYSHRIYCFIRADNEEI-AWYKLMTNLNDYFSEETVEMMLSNIEVIVGDFECMD 143 (427)
T ss_dssp CCCCCEEEEEECTTSHHHHHHHHHHTTTEEEEEEEEECSSHHH-HHHHHHHHHHHHSCHHHHHHHHTTEEEEEECC---C
T ss_pred CCCCCCEEEEecCCcHHHHHHHHHHHcCCCEEEEEECCCChHH-HHHHHHHHHHHhccccccccccCceEEEeCCCCCcc
Confidence 3456789999999999999999999999999999999764211 11111110 112358999999999988
Q ss_pred HHHHhhccCCccEEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcCccccCC-----CCCCCCC
Q 012176 184 LLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGL-----NTQVPFS 258 (469)
Q Consensus 184 ~l~~~~~~~~~d~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS~~vyg~-----~~~~~~~ 258 (469)
.+. .+.+ +|+||||||.... ..++...+++|+.++.+++++|++ +.+ +|||+||.++ |. ....+++
T Consensus 144 ~l~-~~~~--~d~Vih~A~~~~~---~~~~~~~~~~Nv~g~~~l~~aa~~-~~~-~~v~~SS~~~-G~~~~~~~~~~~~~ 214 (427)
T 4f6c_A 144 DVV-LPEN--MDTIIHAGARTDH---FGDDDEFEKVNVQGTVDVIRLAQQ-HHA-RLIYVSTISV-GTYFDIDTEDVTFS 214 (427)
T ss_dssp CCC-CSSC--CSEEEECCCCC----------CHHHHHHHHHHHHHHHHHH-TTC-EEEEEEEGGG-GSEECSSCSCCEEC
T ss_pred cCC-CcCC--CCEEEECCcccCC---CCCHHHHHHHHHHHHHHHHHHHHh-cCC-cEEEECchHh-CCCccCCCCCcccc
Confidence 888 5554 4999999997543 256678899999999999999998 555 9999999988 43 2345788
Q ss_pred CCCCC--CCCCChHHHHHHHHHHHHHHHHHHhCCcEEEEeecceecCCCCCC-------ChHHHHHHHHHcCCceEEEee
Q 012176 259 ESHRT--DQPASLYAATKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPD-------MAYFFFTKDILQGKTIDVYKT 329 (469)
Q Consensus 259 E~~~~--~~p~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~Gp~~~~~-------~~~~~~~~~~~~g~~~~~~~~ 329 (469)
|+++. ..+.+.|+.+|+++|.+++++++ .|++++++|||+||||..... ..+..+++.+..+.+++..
T Consensus 215 E~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~-~g~~~~ivRpg~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 291 (427)
T 4f6c_A 215 EADVYKGQLLTSPYTRSKFYSELKVLEAVN-NGLDGRIVRVGNLTSPYNGRWHMRNIKTNRFSMVMNDLLQLDCIGVS-- 291 (427)
T ss_dssp TTCSCSSCCCCSHHHHHHHHHHHHHHHHHH-TTCCEEEEEECCEESCSSSCCCCTTGGGCHHHHHHHHHHHSSEEEHH--
T ss_pred ccccccCCCCCCchHHHHHHHHHHHHHHHH-cCCCEEEEeCCeeecCCCCCccccCcchHHHHHHHHHHHhcCCCCCc--
Confidence 88762 24789999999999999999865 699999999999999976543 2356778888887766542
Q ss_pred CCCCcceEecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCCcccHHHHHHHHHHHhCCCccceeecCCC-------
Q 012176 330 QDDREVARDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPR------- 402 (469)
Q Consensus 330 ~~~~~~~~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~~vt~~el~~~i~~~~g~~~~~~~~~~~~------- 402 (469)
.++..++|+|++|+|++++.++..+. .+++||+++++++++.|+++.+.+ +| ...++.+.
T Consensus 292 --~~~~~~~~v~v~DvA~ai~~~~~~~~------~g~~~~l~~~~~~s~~el~~~i~~-~g----~~~~~~~~~~~~l~~ 358 (427)
T 4f6c_A 292 --MAEMPVDFSFVDTTARQIVALAQVNT------PQIIYHVLSPNKMPVKSLLECVKR-KE----IELVSDESFNEILQK 358 (427)
T ss_dssp --HHTCEECCEEHHHHHHHHHHHTTSCC------CCSEEEESCSCCEEHHHHHHHHHS-SC----CEEECHHHHHHHHHH
T ss_pred --cccceEEEeeHHHHHHHHHHHHcCCC------CCCEEEecCCCCCcHHHHHHHHHH-cC----CcccCHHHHHHHHHh
Confidence 25889999999999999999998762 459999999999999999999998 56 22222111
Q ss_pred CC------------CCCcccCChHHHH---HhcCCCccCcHHHHHHHHHHHHHHHcCCC
Q 012176 403 NG------------DVPYTHANVSLAY---KDFGYKPTTDLAAGLRKFVKWYVSYYGIQ 446 (469)
Q Consensus 403 ~~------------~~~~~~~d~~ka~---~~LG~~p~~~l~~~l~~~v~~~~~~~~~~ 446 (469)
.+ ......+|+++.. +++||++...-++.++++++|+.+.++..
T Consensus 359 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~G~~~~~~~~~~l~~~~~~l~~~~~~~ 417 (427)
T 4f6c_A 359 QDMYETIGLTSVDREQQLAMIDTTLTLKIMNHISEKWPTITNNWLYHWAQYIKTIFNKA 417 (427)
T ss_dssp TTCHHHHHHHHHHHTSEECEECCHHHHHHHHHTTCCCCCCCHHHHHHHHHHHHHHHC--
T ss_pred cCchhhhhhhhccccCCceeccHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHhhh
Confidence 00 1112455666554 66899988656779999999999987643
|
| >2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-34 Score=277.66 Aligned_cols=261 Identities=17% Similarity=0.165 Sum_probs=204.7
Q ss_pred CEEEEEcCCChhHHHHHHHHHHC--CCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCccE
Q 012176 119 MTVLVTGAAGFVGSHCSLALKKR--GDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTH 196 (469)
Q Consensus 119 ~~VlVtGatG~IG~~l~~~L~~~--G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~d~ 196 (469)
|+||||||+||||++++++|+++ |++|++++|..... .. +...+++++.+|++|++.+.++++++ |+
T Consensus 1 ~~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~----~~-----l~~~~~~~~~~D~~d~~~l~~~~~~~--d~ 69 (287)
T 2jl1_A 1 FSIAVTGATGQLGGLVIQHLLKKVPASQIIAIVRNVEKA----ST-----LADQGVEVRHGDYNQPESLQKAFAGV--SK 69 (287)
T ss_dssp CCEEETTTTSHHHHHHHHHHTTTSCGGGEEEEESCTTTT----HH-----HHHTTCEEEECCTTCHHHHHHHTTTC--SE
T ss_pred CeEEEEcCCchHHHHHHHHHHHhCCCCeEEEEEcCHHHH----hH-----HhhcCCeEEEeccCCHHHHHHHHhcC--CE
Confidence 57999999999999999999999 99999999965421 11 11247899999999999999999987 99
Q ss_pred EEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcCccccCCCCCCCCCCCCCCCCCCChHHHHHHH
Q 012176 197 VLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKA 276 (469)
Q Consensus 197 Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y~~sK~~ 276 (469)
|||+|+.. . . . ++|+.++.+++++|++.+++ +|||+||.++|. .+ ..|+.+|.+
T Consensus 70 vi~~a~~~-~----~---~--~~n~~~~~~l~~a~~~~~~~-~~v~~Ss~~~~~--------------~~-~~y~~~K~~ 123 (287)
T 2jl1_A 70 LLFISGPH-Y----D---N--TLLIVQHANVVKAARDAGVK-HIAYTGYAFAEE--------------SI-IPLAHVHLA 123 (287)
T ss_dssp EEECCCCC-S----C---H--HHHHHHHHHHHHHHHHTTCS-EEEEEEETTGGG--------------CC-STHHHHHHH
T ss_pred EEEcCCCC-c----C---c--hHHHHHHHHHHHHHHHcCCC-EEEEECCCCCCC--------------CC-CchHHHHHH
Confidence 99999852 1 1 1 57999999999999999986 999999988862 11 369999999
Q ss_pred HHHHHHHHHHHhCCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceEecccHHHHHHHHHHHhccC
Q 012176 277 GEEIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGATGSG 356 (469)
Q Consensus 277 ~E~~~~~~~~~~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~~~~~~~~~~ 356 (469)
+|+++++ +|++++++||+.++|+.... .+...+..+. .. . ..+++.++|+|++|+|++++.+++++
T Consensus 124 ~E~~~~~----~~~~~~ilrp~~~~~~~~~~-----~~~~~~~~~~-~~-~---~~~~~~~~~i~~~Dva~~~~~~~~~~ 189 (287)
T 2jl1_A 124 TEYAIRT----TNIPYTFLRNALYTDFFVNE-----GLRASTESGA-IV-T---NAGSGIVNSVTRNELALAAATVLTEE 189 (287)
T ss_dssp HHHHHHH----TTCCEEEEEECCBHHHHSSG-----GGHHHHHHTE-EE-E---SCTTCCBCCBCHHHHHHHHHHHHTSS
T ss_pred HHHHHHH----cCCCeEEEECCEeccccchh-----hHHHHhhCCc-ee-c---cCCCCccCccCHHHHHHHHHHHhcCC
Confidence 9998865 69999999999988864211 1222222343 32 3 34677899999999999999999875
Q ss_pred CCCCCCCCceEEEeCCCCcccHHHHHHHHHHHhCCCccceeecCCC-------CCCC----------------CcccCCh
Q 012176 357 GKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPR-------NGDV----------------PYTHANV 413 (469)
Q Consensus 357 ~~~~~~~~~~iyni~~~~~vt~~el~~~i~~~~g~~~~~~~~~~~~-------~~~~----------------~~~~~d~ 413 (469)
. ..+++||+++++++|+.|+++.+.+.+|.+..+...|... .+.. .....|+
T Consensus 190 ~-----~~g~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (287)
T 2jl1_A 190 G-----HENKTYNLVSNQPWTFDELAQILSEVSGKKVVHQPVSFEEEKNFLVNAGVPEPFTEITAAIYDAISKGEASKTS 264 (287)
T ss_dssp S-----CTTEEEEECCSSCBCHHHHHHHHHHHHSSCCEEEECCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTTTTCCCC
T ss_pred C-----CCCcEEEecCCCcCCHHHHHHHHHHHHCCcceEEeCCHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCCCcCCc
Confidence 2 3458999999999999999999999999987655444210 0111 2345678
Q ss_pred HHHHHhcCCCccCcHHHHHHHHHH
Q 012176 414 SLAYKDFGYKPTTDLAAGLRKFVK 437 (469)
Q Consensus 414 ~ka~~~LG~~p~~~l~~~l~~~v~ 437 (469)
++++++|| |.++++|+|+++++
T Consensus 265 ~~~~~~lG--~~~~l~e~l~~~~~ 286 (287)
T 2jl1_A 265 DDLQKLIG--SLTPLKETVKQALK 286 (287)
T ss_dssp SHHHHHHS--SCCCHHHHHHHHHT
T ss_pred hHHHHHhC--CCCCHHHHHHHHhc
Confidence 99999999 77799999999875
|
| >4f6l_B AUSA reductase domain protein; thioester reductase, oxidoreductase; 3.86A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-34 Score=303.12 Aligned_cols=305 Identities=17% Similarity=0.212 Sum_probs=227.8
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHH----------HhhccCCeEEEEecCCCHHHH
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQ----------KLLQKHQVFIVEGDLNDAPLL 185 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~----------~~~~~~~v~~v~~Dl~d~~~l 185 (469)
..+|+|||||||||||++|+++|++.|++|++++|....... ..+... ......+++++.+|+.|++.+
T Consensus 148 ~~~~~VLVTGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~-~~~l~~~l~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l 226 (508)
T 4f6l_B 148 RPLGNTLLTGATGFLGAYLIEALQGYSHRIYCFIRADNEEIA-WYKLMTNLNDYFSEETVEMMLSNIEVIVGDFECMDDV 226 (508)
T ss_dssp CCCEEEEESCTTSHHHHHHHHHTBTTEEEEEEEEESSSHHHH-HHHHHHHHHHHSCHHHHHHHSTTEEEEEEBTTBCSSC
T ss_pred CCCCeEEEECCccchHHHHHHHHHhcCCEEEEEECCCChHHH-HHHHHHHHHHhcccccchhccCceEEEecCCcccccC
Confidence 456899999999999999999999999999999997652111 111111 112245899999999998877
Q ss_pred HHhhccCCccEEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcCccccCC-----CCCCCCCCC
Q 012176 186 TKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGL-----NTQVPFSES 260 (469)
Q Consensus 186 ~~~~~~~~~d~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS~~vyg~-----~~~~~~~E~ 260 (469)
. ++.++ |+||||||.... ..++...+++|+.++.+++++|++ +.+ +|||+||.++ |. ....+++|+
T Consensus 227 ~-~~~~~--D~Vih~Aa~~~~---~~~~~~~~~~Nv~gt~~ll~~a~~-~~~-~~v~iSS~~v-G~~~~~~~~~~~~~E~ 297 (508)
T 4f6l_B 227 V-LPENM--DTIIHAGARTDH---FGDDDEFEKVNVQGTVDVIRLAQQ-HHA-RLIYVSTISV-GTYFDIDTEDVTFSEA 297 (508)
T ss_dssp C-CSSCC--SEEEECCCC-----------CCHHHHHHHHHHHHHHHHT-TTC-EEEEEEESCT-TSEECTTCSCCEECTT
T ss_pred C-CccCC--CEEEECCceecC---CCCHHHHhhhHHHHHHHHHHHHHh-CCC-cEEEeCChhh-ccCCccCCcCcccccc
Confidence 7 55544 999999997542 245667889999999999999998 444 9999999998 43 234578888
Q ss_pred CCC--CCCCChHHHHHHHHHHHHHHHHHHhCCcEEEEeecceecCCCCCC-------ChHHHHHHHHHcCCceEEEeeCC
Q 012176 261 HRT--DQPASLYAATKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPD-------MAYFFFTKDILQGKTIDVYKTQD 331 (469)
Q Consensus 261 ~~~--~~p~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~Gp~~~~~-------~~~~~~~~~~~~g~~~~~~~~~~ 331 (469)
++. ..+.+.|+.+|+++|.+++.+++ .|++++++||++|||+..... ..+..+++.+..++.++. +
T Consensus 298 ~~~~~~~~~~~Y~~sK~~~E~~~~~~~~-~gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~----~ 372 (508)
T 4f6l_B 298 DVYKGQLLTSPYTRSKFYSELKVLEAVN-NGLDGRIVRVGNLTSPYNGRWHMRNIKTNRFSMVMNDLLQLDCIGV----S 372 (508)
T ss_dssp CSCSSBCCCSHHHHHHHHHHHHHHHHHH-TTCEEEEEEECCEESCSSSCCCCTTCTTCHHHHHHHHHTTCSEEET----T
T ss_pred cccccccCCCcHHHHHHHHHHHHHHHHH-cCCCEEEEecceeccCCCCCcccCCcchHHHHHHHHHHHHcCCCCC----C
Confidence 763 24779999999999999999865 699999999999999976543 235677777777766543 3
Q ss_pred CCcceEecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCCcccHHHHHHHHHHHhCCCccceeecCCC-------C-
Q 012176 332 DREVARDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPR-------N- 403 (469)
Q Consensus 332 ~~~~~~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~~vt~~el~~~i~~~~g~~~~~~~~~~~~-------~- 403 (469)
++++.++|+|++|+|++++.++.++. .+++||+++++++++.|+++.+.+.. ...++.+. .
T Consensus 373 ~g~~~~~~v~v~DvA~ai~~~~~~~~------~~~~~nl~~~~~~s~~el~~~i~~~~-----~~~~~~~~w~~~l~~~~ 441 (508)
T 4f6l_B 373 MAEMPVDFSFVDTTARQIVALAQVNT------PQIIYHVLSPNKMPVKSLLECVKRKE-----IELVSDESFNEILQKQD 441 (508)
T ss_dssp GGGSEEECEEHHHHHHHHHHHTTBCC------SCSEEEESCSCEEEHHHHHHHHHSSC-----CEEECHHHHHHHHHTTC
T ss_pred ccCceEEEEcHHHHHHHHHHHHhCCC------CCCEEEeCCCCCCCHHHHHHHHHHcC-----CcccCHHHHHHHHHhcC
Confidence 36889999999999999999998763 45999999999999999999999754 12222110 0
Q ss_pred -----------CCCCcccCChHHHH---HhcCCCccCcHHHHHHHHHHHHHHHcCCC
Q 012176 404 -----------GDVPYTHANVSLAY---KDFGYKPTTDLAAGLRKFVKWYVSYYGIQ 446 (469)
Q Consensus 404 -----------~~~~~~~~d~~ka~---~~LG~~p~~~l~~~l~~~v~~~~~~~~~~ 446 (469)
.......+|+++.. +++||++....++.++++++|+.+.++..
T Consensus 442 ~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~G~~~~~~~~~~l~~~~~~~~~~~~~~ 498 (508)
T 4f6l_B 442 MYETIGLTSVDREQQLAMIDTTLTLKIMNHISEKWPTITNNWLYHWAQYIKTIFNKA 498 (508)
T ss_dssp CHHHHHHHHTGGGSEECEECCHHHHHHHHHHSCCCCCCCHHHHHHHHHHHHHHHC--
T ss_pred CccchhcccccccCcceecchHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 01113345655544 66899998767889999999999998744
|
| >2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-33 Score=278.56 Aligned_cols=269 Identities=18% Similarity=0.203 Sum_probs=212.5
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHC-CC-cEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccC
Q 012176 115 RPNGMTVLVTGAAGFVGSHCSLALKKR-GD-GVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV 192 (469)
Q Consensus 115 ~~~~~~VlVtGatG~IG~~l~~~L~~~-G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~ 192 (469)
..++|+||||||+|+||++|+++|+++ |+ +|++++|... ........+...++.++.+|++|.+.+.++++++
T Consensus 18 ~~~~k~vlVTGatG~iG~~l~~~L~~~~g~~~V~~~~r~~~-----~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~ 92 (344)
T 2gn4_A 18 MLDNQTILITGGTGSFGKCFVRKVLDTTNAKKIIVYSRDEL-----KQSEMAMEFNDPRMRFFIGDVRDLERLNYALEGV 92 (344)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHHCCCSEEEEEESCHH-----HHHHHHHHHCCTTEEEEECCTTCHHHHHHHTTTC
T ss_pred hhCCCEEEEECCCcHHHHHHHHHHHhhCCCCEEEEEECChh-----hHHHHHHHhcCCCEEEEECCCCCHHHHHHHHhcC
Confidence 367899999999999999999999999 97 9999999432 1111112223458999999999999999999876
Q ss_pred CccEEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcCccccCCCCCCCCCCCCCCCCCCChHHH
Q 012176 193 PFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAA 272 (469)
Q Consensus 193 ~~d~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y~~ 272 (469)
|+|||+||.......+.++...+++|+.|+.+++++|.+.+++ +||++||..++ .|.+.|+.
T Consensus 93 --D~Vih~Aa~~~~~~~~~~~~~~~~~Nv~gt~~l~~aa~~~~v~-~~V~~SS~~~~---------------~p~~~Y~~ 154 (344)
T 2gn4_A 93 --DICIHAAALKHVPIAEYNPLECIKTNIMGASNVINACLKNAIS-QVIALSTDKAA---------------NPINLYGA 154 (344)
T ss_dssp --SEEEECCCCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTCS-EEEEECCGGGS---------------SCCSHHHH
T ss_pred --CEEEECCCCCCCCchhcCHHHHHHHHHHHHHHHHHHHHhCCCC-EEEEecCCccC---------------CCccHHHH
Confidence 9999999987766566778899999999999999999999986 99999997765 35688999
Q ss_pred HHHHHHHHHHHHHHH---hCCcEEEEeecceecCCCCCCChHHHHHHHHHcCC-ceEEEeeCCCCcceEecccHHHHHHH
Q 012176 273 TKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGK-TIDVYKTQDDREVARDFTYIDDVVKG 348 (469)
Q Consensus 273 sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~v~v~Dva~~ 348 (469)
+|.++|.+++.++.+ .|++++++|||+||||++. .++.|.+.+..|+ ++++. +++..++|+|++|+|++
T Consensus 155 sK~~~E~~~~~~~~~~~~~g~~~~~vRpg~v~g~~~~---~i~~~~~~~~~g~~~~~i~----~~~~~r~~i~v~D~a~~ 227 (344)
T 2gn4_A 155 TKLCSDKLFVSANNFKGSSQTQFSVVRYGNVVGSRGS---VVPFFKKLVQNKASEIPIT----DIRMTRFWITLDEGVSF 227 (344)
T ss_dssp HHHHHHHHHHHGGGCCCSSCCEEEEECCCEETTCTTS---HHHHHHHHHHHTCCCEEES----CTTCEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCcEEEEEEeccEECCCCC---HHHHHHHHHHcCCCceEEe----CCCeEEeeEEHHHHHHH
Confidence 999999999998864 5799999999999998753 6778888888888 77764 46778999999999999
Q ss_pred HHHHhccCCCCCCCCCceEEEeCCCCcccHHHHHHHHHHHhCCCccceeecCCCCCCC-CcccCChHHHHHhcCCCcc
Q 012176 349 CVGATGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRNGDV-PYTHANVSLAYKDFGYKPT 425 (469)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~iyni~~~~~vt~~el~~~i~~~~g~~~~~~~~~~~~~~~~-~~~~~d~~ka~~~LG~~p~ 425 (469)
++.+++++. .+++||+.++ .+++.|+++.+.+.++. ...+ .+.++. ........++++.++|..-
T Consensus 228 v~~~l~~~~------~g~~~~~~~~-~~s~~el~~~i~~~~~~----~~~~-~~~~e~~~e~~~~~~~~~~~~~~~~~ 293 (344)
T 2gn4_A 228 VLKSLKRMH------GGEIFVPKIP-SMKMTDLAKALAPNTPT----KIIG-IRPGEKLHEVMIPKDESHLALEFEDF 293 (344)
T ss_dssp HHHHHHHCC------SSCEEEECCC-EEEHHHHHHHHCTTCCE----EECC-CCTTCCSSCEEECGGGGGGEEECSSE
T ss_pred HHHHHhhcc------CCCEEecCCC-cEEHHHHHHHHHHhCCe----eEcC-CCCCccHhhhccCHhHHHhhccCCCE
Confidence 999998752 3489999877 59999999999865432 1221 122322 1223345555666676644
|
| >4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif, rossmann fold, short chain dehydrogenase/REDU family, reductase; 2.30A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-33 Score=292.73 Aligned_cols=271 Identities=19% Similarity=0.231 Sum_probs=207.8
Q ss_pred CCCCCCEEEEEcCCChhHHHHHHHHHHC---CCcEEEEeCCCCCCChhHHHHHH-------------HhhccCCeEEEEe
Q 012176 114 RRPNGMTVLVTGAAGFVGSHCSLALKKR---GDGVLGLDNFNSYYDPSLKRARQ-------------KLLQKHQVFIVEG 177 (469)
Q Consensus 114 ~~~~~~~VlVtGatG~IG~~l~~~L~~~---G~~V~~~~r~~~~~~~~~~~~~~-------------~~~~~~~v~~v~~ 177 (469)
...++|+||||||+||||++|+++|+++ |++|++++|...... ...+... ......+++++.+
T Consensus 69 ~~~~~~~VLVTGatG~IG~~l~~~Ll~~~~~g~~V~~l~R~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~v~~v~~ 147 (478)
T 4dqv_A 69 PSPELRTVLLTGATGFLGRYLVLELLRRLDVDGRLICLVRAESDED-ARRRLEKTFDSGDPELLRHFKELAADRLEVVAG 147 (478)
T ss_dssp CCSCCCEEEEECTTSHHHHHHHHHHHHHSCTTCEEEEEECSSSHHH-HHHHHHGGGCSSCHHHHHHHHHHHTTTEEEEEC
T ss_pred CCCCCCEEEEECCCcHHHHHHHHHHHhcCCCCCEEEEEECCCCcHH-HHHHHHHHHHhcchhhhhhhhhhccCceEEEEe
Confidence 4467899999999999999999999999 999999999764211 1111100 0011258999999
Q ss_pred cCC------CHHHHHHhhccCCccEEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcCccccCC
Q 012176 178 DLN------DAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGL 251 (469)
Q Consensus 178 Dl~------d~~~l~~~~~~~~~d~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS~~vyg~ 251 (469)
|++ |.+.++++++++ |+||||||.... .++...+++|+.++.+++++|++.+++ +|||+||.++|+.
T Consensus 148 Dl~~~~~gld~~~~~~~~~~~--D~Vih~Aa~~~~----~~~~~~~~~Nv~gt~~ll~aa~~~~~~-~~V~iSS~~v~~~ 220 (478)
T 4dqv_A 148 DKSEPDLGLDQPMWRRLAETV--DLIVDSAAMVNA----FPYHELFGPNVAGTAELIRIALTTKLK-PFTYVSTADVGAA 220 (478)
T ss_dssp CTTSGGGGCCHHHHHHHHHHC--CEEEECCSSCSB----SSCCEEHHHHHHHHHHHHHHHTSSSCC-CEEEEEEGGGGTT
T ss_pred ECCCcccCCCHHHHHHHHcCC--CEEEECccccCC----cCHHHHHHHHHHHHHHHHHHHHhCCCC-eEEEEeehhhcCc
Confidence 998 667899999977 999999998653 566678899999999999999999886 9999999999998
Q ss_pred CCCCCCCCCCCCCCCC-----------ChHHHHHHHHHHHHHHHHHHhCCcEEEEeecceecCCC-----CCCChHHHHH
Q 012176 252 NTQVPFSESHRTDQPA-----------SLYAATKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWG-----RPDMAYFFFT 315 (469)
Q Consensus 252 ~~~~~~~E~~~~~~p~-----------~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~Gp~~-----~~~~~~~~~~ 315 (469)
....+++|+++. .|. +.|+.+|+++|.++++++.++|++++++|||+|||+.. ....++..++
T Consensus 221 ~~~~~~~E~~~~-~p~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gi~~~ivRpg~v~G~~~~~g~~~~~~~~~~l~ 299 (478)
T 4dqv_A 221 IEPSAFTEDADI-RVISPTRTVDGGWAGGYGTSKWAGEVLLREANDLCALPVAVFRCGMILADTSYAGQLNMSDWVTRMV 299 (478)
T ss_dssp SCTTTCCSSSCH-HHHCCEEECCTTSEECHHHHHHHHHHHHHHHHHHHCCCEEEEEECEEECCSSSSSCCCTTBHHHHHH
T ss_pred cCCCCcCCcccc-cccCcccccccccccchHHHHHHHHHHHHHHHHHhCCCeEEEECceeeCCCccCCcCCHHHHHHHHH
Confidence 777788887753 222 44999999999999999988899999999999999854 2233445555
Q ss_pred HHHHcCCceE--EEeeCCC---CcceEecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCCc--ccHHHHHHHHHHH
Q 012176 316 KDILQGKTID--VYKTQDD---REVARDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTSP--VPVGRLVSILENL 388 (469)
Q Consensus 316 ~~~~~g~~~~--~~~~~~~---~~~~~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~~--vt~~el~~~i~~~ 388 (469)
......+..+ ++...++ ++..++++||+|+|++++.++.+... .....+++||++++++ +++.|+++.+.+.
T Consensus 300 ~~~~~~g~~P~~~~~~~~~G~~~~~~~~~v~vdDvA~ai~~~~~~~~~-~~~~~~~~ynv~~~~~~~~s~~el~~~l~~~ 378 (478)
T 4dqv_A 300 LSLMATGIAPRSFYEPDSEGNRQRAHFDGLPVTFVAEAIAVLGARVAG-SSLAGFATYHVMNPHDDGIGLDEYVDWLIEA 378 (478)
T ss_dssp HHHHHHCEEESCSBCCCTTSCCCCCCCCEEEHHHHHHHHHHHHHTTC--CCCCSEEEEEESCCCCSSCSHHHHHHHHHHT
T ss_pred HHHHHcCcccccccccccccccccceeeeeeHHHHHHHHHHHHhhccc-CCCCCCceEEecCCCCCCcCHHHHHHHHHHc
Confidence 5544433222 1111111 26789999999999999999876211 1134569999999988 9999999999995
Q ss_pred hCCCccc
Q 012176 389 LNTKAKK 395 (469)
Q Consensus 389 ~g~~~~~ 395 (469)
|.+...
T Consensus 379 -g~~~~~ 384 (478)
T 4dqv_A 379 -GYPIRR 384 (478)
T ss_dssp -TCSCEE
T ss_pred -CCCccc
Confidence 766543
|
| >2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-33 Score=274.14 Aligned_cols=261 Identities=16% Similarity=0.115 Sum_probs=199.1
Q ss_pred EEEEEcCCChhHHHHHHHHHHC--CCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCccEE
Q 012176 120 TVLVTGAAGFVGSHCSLALKKR--GDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTHV 197 (469)
Q Consensus 120 ~VlVtGatG~IG~~l~~~L~~~--G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~d~V 197 (469)
+||||||+||||++++++|+++ |++|++++|...... . +...+++++.+|++|++++.++++++ |+|
T Consensus 1 ~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~----~-----~~~~~~~~~~~D~~d~~~~~~~~~~~--d~v 69 (286)
T 2zcu_A 1 MIAITGATGQLGHYVIESLMKTVPASQIVAIVRNPAKAQ----A-----LAAQGITVRQADYGDEAALTSALQGV--EKL 69 (286)
T ss_dssp CEEEESTTSHHHHHHHHHHTTTSCGGGEEEEESCTTTCH----H-----HHHTTCEEEECCTTCHHHHHHHTTTC--SEE
T ss_pred CEEEEcCCchHHHHHHHHHHhhCCCceEEEEEcChHhhh----h-----hhcCCCeEEEcCCCCHHHHHHHHhCC--CEE
Confidence 4899999999999999999999 999999999654221 1 11237899999999999999999987 999
Q ss_pred EEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcCccccCCCCCCCCCCCCCCCCCCChHHHHHHHH
Q 012176 198 LHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAG 277 (469)
Q Consensus 198 ih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y~~sK~~~ 277 (469)
||+|+... +.|+.++.+++++|++.+++ +||++||.++|. . ...|+.+|.++
T Consensus 70 i~~a~~~~------------~~~~~~~~~l~~a~~~~~~~-~~v~~Ss~~~~~--------------~-~~~y~~sK~~~ 121 (286)
T 2zcu_A 70 LLISSSEV------------GQRAPQHRNVINAAKAAGVK-FIAYTSLLHADT--------------S-PLGLADEHIET 121 (286)
T ss_dssp EECC--------------------CHHHHHHHHHHHHTCC-EEEEEEETTTTT--------------C-CSTTHHHHHHH
T ss_pred EEeCCCCc------------hHHHHHHHHHHHHHHHcCCC-EEEEECCCCCCC--------------C-cchhHHHHHHH
Confidence 99998521 14889999999999999986 999999988872 1 14699999999
Q ss_pred HHHHHHHHHHhCCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceEecccHHHHHHHHHHHhccCC
Q 012176 278 EEIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGATGSGG 357 (469)
Q Consensus 278 E~~~~~~~~~~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~~~~~~~~~~~ 357 (469)
|.++++ .|++++++||+.++++.. .++..+..++.+. . +++++.++++|++|+|++++.++.++.
T Consensus 122 e~~~~~----~~~~~~ilrp~~~~~~~~-------~~~~~~~~~~~~~-~---~~~~~~~~~i~~~Dva~~~~~~~~~~~ 186 (286)
T 2zcu_A 122 EKMLAD----SGIVYTLLRNGWYSENYL-------ASAPAALEHGVFI-G---AAGDGKIASATRADYAAAAARVISEAG 186 (286)
T ss_dssp HHHHHH----HCSEEEEEEECCBHHHHH-------TTHHHHHHHTEEE-E---SCTTCCBCCBCHHHHHHHHHHHHHSSS
T ss_pred HHHHHH----cCCCeEEEeChHHhhhhH-------HHhHHhhcCCcee-c---cCCCCccccccHHHHHHHHHHHhcCCC
Confidence 998875 599999999988766421 1222333334443 3 446788999999999999999998752
Q ss_pred CCCCCCCceEEEeCCCCcccHHHHHHHHHHHhCCCccceeecCCC-------CCCC----------------CcccCChH
Q 012176 358 KKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPR-------NGDV----------------PYTHANVS 414 (469)
Q Consensus 358 ~~~~~~~~~iyni~~~~~vt~~el~~~i~~~~g~~~~~~~~~~~~-------~~~~----------------~~~~~d~~ 414 (469)
..+++||+++++.+|+.|+++.+.+.+|.+..+...|... .+.. .....|.+
T Consensus 187 -----~~g~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (286)
T 2zcu_A 187 -----HEGKVYELAGDSAWTLTQLAAELTKQSGKQVTYQNLSEADFAAALKSVGLPDGLADMLADSDVGASKGGLFDDSK 261 (286)
T ss_dssp -----CTTCEEEECCSSCBCHHHHHHHHHHHHSSCCEEEECCHHHHHHHHTTSSCCHHHHHHHHHHHHHHHTTTTCCCCC
T ss_pred -----CCCceEEEeCCCcCCHHHHHHHHHHHHCCCCceeeCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCccCch
Confidence 3458999999999999999999999999887655444210 0111 12456788
Q ss_pred HHHHhcCCCccCcHHHHHHHHHHHHH
Q 012176 415 LAYKDFGYKPTTDLAAGLRKFVKWYV 440 (469)
Q Consensus 415 ka~~~LG~~p~~~l~~~l~~~v~~~~ 440 (469)
++++.||| |.++++++|+++++||.
T Consensus 262 ~~~~~lg~-~~~~~~e~l~~~~~~~~ 286 (286)
T 2zcu_A 262 TLSKLIGH-PTTTLAESVSHLFNVNN 286 (286)
T ss_dssp HHHHHHTS-CCCCHHHHHHGGGC---
T ss_pred HHHHHhCc-CCCCHHHHHHHHHhhcC
Confidence 99999997 55599999999999873
|
| >3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-33 Score=285.50 Aligned_cols=254 Identities=22% Similarity=0.364 Sum_probs=210.7
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCC-cEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCccEE
Q 012176 119 MTVLVTGAAGFVGSHCSLALKKRGD-GVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTHV 197 (469)
Q Consensus 119 ~~VlVtGatG~IG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~d~V 197 (469)
|+||||||+||||++|+++|+++|+ +|++++|. .|++.++++++++ |+|
T Consensus 1 M~VlVtGatG~iG~~l~~~L~~~g~~~v~~~d~~----------------------------~d~~~l~~~~~~~--d~V 50 (369)
T 3st7_A 1 MNIVITGAKGFVGKNLKADLTSTTDHHIFEVHRQ----------------------------TKEEELESALLKA--DFI 50 (369)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHCCCEEEECCTT----------------------------CCHHHHHHHHHHC--SEE
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCEEEEECCC----------------------------CCHHHHHHHhccC--CEE
Confidence 6899999999999999999999999 88887762 6789999999987 999
Q ss_pred EEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcCccccCCCCCCCCCCCCCCCCCCChHHHHHHHH
Q 012176 198 LHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAG 277 (469)
Q Consensus 198 ih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y~~sK~~~ 277 (469)
||+||.... .++...+++|+.++.+++++|++.+++++|||+||.++|+ .+.|+.+|.++
T Consensus 51 ih~a~~~~~----~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~v~~Ss~~~~~----------------~~~Y~~sK~~~ 110 (369)
T 3st7_A 51 VHLAGVNRP----EHDKEFSLGNVSYLDHVLDILTRNTKKPAILLSSSIQATQ----------------DNPYGESKLQG 110 (369)
T ss_dssp EECCCSBCT----TCSTTCSSSCCBHHHHHHHHHTTCSSCCEEEEEEEGGGGS----------------CSHHHHHHHHH
T ss_pred EECCcCCCC----CCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEeCchhhcC----------------CCCchHHHHHH
Confidence 999997543 4566678889999999999999999866999999999986 36899999999
Q ss_pred HHHHHHHHHHhCCcEEEEeecceecCCCCCC--ChHHHHHHHHHcCCceEEEeeCCCCcceEecccHHHHHHHHHHHhcc
Q 012176 278 EEIAHTYNHIYGLALTGLRFFTVYGPWGRPD--MAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGATGS 355 (469)
Q Consensus 278 E~~~~~~~~~~gi~~~ilRp~~v~Gp~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~~~~~~~~~ 355 (469)
|++++.+++++|++++++||++||||+..++ .++..++..+..+.++.+. ++++.++++|++|+|++++.++++
T Consensus 111 E~~~~~~~~~~g~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~i~v~Dva~~~~~~l~~ 186 (369)
T 3st7_A 111 EQLLREYAEEYGNTVYIYRWPNLFGKWCKPNYNSVIATFCYKIARNEEIQVN----DRNVELTLNYVDDIVAEIKRAIEG 186 (369)
T ss_dssp HHHHHHHHHHHCCCEEEEEECEEECTTCCTTSSCHHHHHHHHHHTTCCCCCS----CTTCEEEEEEHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCEEEEECCceeCCCCCCCcchHHHHHHHHHHcCCCeEec----CCCeEEEEEEHHHHHHHHHHHHhC
Confidence 9999999998999999999999999987653 5778899999999887653 578899999999999999999987
Q ss_pred CCCCCCCCCceEEEeCCCCcccHHHHHHHHHHHhCCCccceeecCCCCCCCCcccCChHHHHHhcCCCccCcHHHHHHHH
Q 012176 356 GGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRNGDVPYTHANVSLAYKDFGYKPTTDLAAGLRKF 435 (469)
Q Consensus 356 ~~~~~~~~~~~iyni~~~~~vt~~el~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~~l~~~l~~~ 435 (469)
+.. ..+++||+++++.+|+.|+++.+.+.+|.+......+.+ ...........|||.|...++.+++..
T Consensus 187 ~~~----~~~~~~~i~~~~~~s~~e~~~~~~~~~g~~~~~~~~~~~-------~~~~~~l~~~~l~~~p~~~~~~~l~~~ 255 (369)
T 3st7_A 187 TPT----IENGVPTVPNVFKVTLGEIVDLLYKFKQSRLDRTLPKLD-------NLFEKDLYSTYLSYLPSTDFSYPLLMN 255 (369)
T ss_dssp CCC----EETTEECCSCCEEEEHHHHHHHHHHHHHHHHHTCCCCTT-------SHHHHHHHHHHHHTSCTTCSCCCCCEE
T ss_pred Ccc----cCCceEEeCCCCceeHHHHHHHHHHHhCCCcccccCCCC-------CHHHHHHHHHHhcccCCcceeechhhc
Confidence 632 125999999999999999999999999987543322211 011113334458999988877776654
Q ss_pred HH
Q 012176 436 VK 437 (469)
Q Consensus 436 v~ 437 (469)
.+
T Consensus 256 ~D 257 (369)
T 3st7_A 256 VD 257 (369)
T ss_dssp EE
T ss_pred cC
Confidence 44
|
| >3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse, oxidoreductase; 2.10A {Chromohalobacter salexigens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-32 Score=265.32 Aligned_cols=235 Identities=22% Similarity=0.230 Sum_probs=195.6
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCccEEE
Q 012176 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTHVL 198 (469)
Q Consensus 119 ~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~d~Vi 198 (469)
|+||||||+||||++|+++|+++|++|++++|...... ..+++++.+|++|++.+.++++++ |+||
T Consensus 3 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~------------~~~~~~~~~Dl~d~~~~~~~~~~~--d~vi 68 (267)
T 3ay3_A 3 NRLLVTGAAGGVGSAIRPHLGTLAHEVRLSDIVDLGAA------------EAHEEIVACDLADAQAVHDLVKDC--DGII 68 (267)
T ss_dssp EEEEEESTTSHHHHHHGGGGGGTEEEEEECCSSCCCCC------------CTTEEECCCCTTCHHHHHHHHTTC--SEEE
T ss_pred ceEEEECCCCHHHHHHHHHHHhCCCEEEEEeCCCcccc------------CCCccEEEccCCCHHHHHHHHcCC--CEEE
Confidence 58999999999999999999999999999999764211 136889999999999999999976 9999
Q ss_pred EcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcCccccCCCC-CCCCCCCCCCCCCCChHHHHHHHH
Q 012176 199 HLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNT-QVPFSESHRTDQPASLYAATKKAG 277 (469)
Q Consensus 199 h~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS~~vyg~~~-~~~~~E~~~~~~p~~~Y~~sK~~~ 277 (469)
||||.. ...+.+..+++|+.++.+++++|++.+++ +|||+||.++|+... ..+++|+++. .|.+.|+.+|.++
T Consensus 69 ~~a~~~----~~~~~~~~~~~n~~~~~~l~~a~~~~~~~-~iv~~SS~~~~~~~~~~~~~~E~~~~-~~~~~Y~~sK~~~ 142 (267)
T 3ay3_A 69 HLGGVS----VERPWNDILQANIIGAYNLYEAARNLGKP-RIVFASSNHTIGYYPRTTRIDTEVPR-RPDSLYGLSKCFG 142 (267)
T ss_dssp ECCSCC----SCCCHHHHHHHTHHHHHHHHHHHHHTTCC-EEEEEEEGGGSTTSBTTSCBCTTSCC-CCCSHHHHHHHHH
T ss_pred ECCcCC----CCCCHHHHHHHHHHHHHHHHHHHHHhCCC-EEEEeCCHHHhCCCCCCCCCCCCCCC-CCCChHHHHHHHH
Confidence 999974 23566789999999999999999998876 999999999998643 4588998877 7889999999999
Q ss_pred HHHHHHHHHHhCCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceEecccHHHHHHHHHHHhccCC
Q 012176 278 EEIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGATGSGG 357 (469)
Q Consensus 278 E~~~~~~~~~~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~~~~~~~~~~~ 357 (469)
|.+++.+...+|++++++||+.||+... +++..++++|++|+|++++.+++++.
T Consensus 143 e~~~~~~~~~~gi~~~~lrp~~v~~~~~--------------------------~~~~~~~~~~~~dva~~~~~~~~~~~ 196 (267)
T 3ay3_A 143 EDLASLYYHKFDIETLNIRIGSCFPKPK--------------------------DARMMATWLSVDDFMRLMKRAFVAPK 196 (267)
T ss_dssp HHHHHHHHHTTCCCEEEEEECBCSSSCC--------------------------SHHHHHHBCCHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHcCCCEEEEeceeecCCCC--------------------------CCCeeeccccHHHHHHHHHHHHhCCC
Confidence 9999999888899999999999984210 13445789999999999999998762
Q ss_pred CCCCCCCceEEEeCCCCcccHHHHHHHHHHHhCCCccceeecCCCCCCCCcccCChHHHHHhcCCCccCcHHHHHHHHHH
Q 012176 358 KKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRNGDVPYTHANVSLAYKDFGYKPTTDLAAGLRKFVK 437 (469)
Q Consensus 358 ~~~~~~~~~iyni~~~~~vt~~el~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~~l~~~l~~~v~ 437 (469)
...++|++.++. .....|..++ +.|||+|+++++++++++.+
T Consensus 197 -----~~~~~~~~~~~~--------------------------------~~~~~d~~~~-~~lg~~p~~~~~~~~~~~~~ 238 (267)
T 3ay3_A 197 -----LGCTVVYGASAN--------------------------------TESWWDNDKS-AFLGWVPQDSSEIWREEIEQ 238 (267)
T ss_dssp -----CCEEEEEECCSC--------------------------------SSCCBCCGGG-GGGCCCCCCCGGGGHHHHHH
T ss_pred -----CCceeEecCCCc--------------------------------cccccCHHHH-HHcCCCCCCCHHHHHHHHHh
Confidence 224778776532 1234566777 88999999999999988765
|
| >3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-33 Score=261.33 Aligned_cols=224 Identities=11% Similarity=0.074 Sum_probs=177.9
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCccEE
Q 012176 118 GMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTHV 197 (469)
Q Consensus 118 ~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~d~V 197 (469)
+|+||||||+||||++|+++|+++|++|++++|........ ..+++++.+|++|.+++.++++++ |+|
T Consensus 4 m~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~----------~~~~~~~~~Dl~d~~~~~~~~~~~--d~v 71 (227)
T 3dhn_A 4 VKKIVLIGASGFVGSALLNEALNRGFEVTAVVRHPEKIKIE----------NEHLKVKKADVSSLDEVCEVCKGA--DAV 71 (227)
T ss_dssp CCEEEEETCCHHHHHHHHHHHHTTTCEEEEECSCGGGCCCC----------CTTEEEECCCTTCHHHHHHHHTTC--SEE
T ss_pred CCEEEEEcCCchHHHHHHHHHHHCCCEEEEEEcCcccchhc----------cCceEEEEecCCCHHHHHHHhcCC--CEE
Confidence 57999999999999999999999999999999965432211 258999999999999999999977 999
Q ss_pred EEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcCccccCCCCCCCCCCCCCCCCCCChHHHHHHHH
Q 012176 198 LHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAG 277 (469)
Q Consensus 198 ih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y~~sK~~~ 277 (469)
||+||... .+ ...+++|+.++.+++++|++.+++ +|||+||.++|+..... ..|+++. .|.+.|+.+|.++
T Consensus 72 i~~a~~~~-----~~-~~~~~~n~~~~~~l~~~~~~~~~~-~~v~~Ss~~~~~~~~~~-~~~~~~~-~p~~~Y~~sK~~~ 142 (227)
T 3dhn_A 72 ISAFNPGW-----NN-PDIYDETIKVYLTIIDGVKKAGVN-RFLMVGGAGSLFIAPGL-RLMDSGE-VPENILPGVKALG 142 (227)
T ss_dssp EECCCC------------CCSHHHHHHHHHHHHHHHTTCS-EEEEECCSTTSEEETTE-EGGGTTC-SCGGGHHHHHHHH
T ss_pred EEeCcCCC-----CC-hhHHHHHHHHHHHHHHHHHHhCCC-EEEEeCChhhccCCCCC-ccccCCc-chHHHHHHHHHHH
Confidence 99998642 11 236788999999999999999986 99999999887654432 2344444 6788999999999
Q ss_pred HHHHHHHHHHhCCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceEecccHHHHHHHHHHHhccCC
Q 012176 278 EEIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGATGSGG 357 (469)
Q Consensus 278 E~~~~~~~~~~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~~~~~~~~~~~ 357 (469)
|.+++.+++++|++++++||+.||||+...... ..+....+.. ++. ++|+|++|+|++++.+++++
T Consensus 143 e~~~~~~~~~~~~~~~ilrp~~v~g~~~~~~~~--------~~~~~~~~~~----~~~-~~~i~~~Dva~ai~~~l~~~- 208 (227)
T 3dhn_A 143 EFYLNFLMKEKEIDWVFFSPAADMRPGVRTGRY--------RLGKDDMIVD----IVG-NSHISVEDYAAAMIDELEHP- 208 (227)
T ss_dssp HHHHHTGGGCCSSEEEEEECCSEEESCCCCCCC--------EEESSBCCCC----TTS-CCEEEHHHHHHHHHHHHHSC-
T ss_pred HHHHHHHhhccCccEEEEeCCcccCCCccccce--------eecCCCcccC----CCC-CcEEeHHHHHHHHHHHHhCc-
Confidence 999999997789999999999999997664332 1233333321 222 89999999999999999987
Q ss_pred CCCCCCCceEEEeCCCCcccHHH
Q 012176 358 KKRGPAQLRVYNLGNTSPVPVGR 380 (469)
Q Consensus 358 ~~~~~~~~~iyni~~~~~vt~~e 380 (469)
...+++|+++++++.+|.+
T Consensus 209 ----~~~g~~~~~~~~~~~~~~~ 227 (227)
T 3dhn_A 209 ----KHHQERFTIGYLEHHHHHH 227 (227)
T ss_dssp ----CCCSEEEEEECCSCCC---
T ss_pred ----cccCcEEEEEeehhcccCC
Confidence 4567999999999988763
|
| >3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=8.6e-32 Score=269.17 Aligned_cols=289 Identities=13% Similarity=0.093 Sum_probs=206.3
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCcc
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFT 195 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~d 195 (469)
+++|+|||||||||||++|+++|+++|++|++++|......... . ....+...+++++.+|++|.+++.++++..++|
T Consensus 8 M~~~~IlVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~-~-~~~~l~~~~v~~~~~Dl~d~~~l~~~~~~~~~d 85 (346)
T 3i6i_A 8 SPKGRVLIAGATGFIGQFVATASLDAHRPTYILARPGPRSPSKA-K-IFKALEDKGAIIVYGLINEQEAMEKILKEHEID 85 (346)
T ss_dssp ---CCEEEECTTSHHHHHHHHHHHHTTCCEEEEECSSCCCHHHH-H-HHHHHHHTTCEEEECCTTCHHHHHHHHHHTTCC
T ss_pred CCCCeEEEECCCcHHHHHHHHHHHHCCCCEEEEECCCCCChhHH-H-HHHHHHhCCcEEEEeecCCHHHHHHHHhhCCCC
Confidence 34678999999999999999999999999999999763311111 1 112233468999999999999999999944459
Q ss_pred EEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcC-CCCeEEEEcCccccCCCCCCCCCCCCCCCCCCChHHHHH
Q 012176 196 HVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVN-PQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATK 274 (469)
Q Consensus 196 ~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~-~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y~~sK 274 (469)
+|||+|+.. |+.++.+++++|++.+ ++ +||+ | +||. +.+|.++. .|...|+.+|
T Consensus 86 ~Vi~~a~~~---------------n~~~~~~l~~aa~~~g~v~-~~v~-S---~~g~----~~~e~~~~-~p~~~y~~sK 140 (346)
T 3i6i_A 86 IVVSTVGGE---------------SILDQIALVKAMKAVGTIK-RFLP-S---EFGH----DVNRADPV-EPGLNMYREK 140 (346)
T ss_dssp EEEECCCGG---------------GGGGHHHHHHHHHHHCCCS-EEEC-S---CCSS----CTTTCCCC-TTHHHHHHHH
T ss_pred EEEECCchh---------------hHHHHHHHHHHHHHcCCce-EEee-c---ccCC----CCCccCcC-CCcchHHHHH
Confidence 999999862 8889999999999999 76 8885 4 4552 34555544 6778899999
Q ss_pred HHHHHHHHHHHHHhCCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceEecccHHHHHHHHHHHhc
Q 012176 275 KAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGATG 354 (469)
Q Consensus 275 ~~~E~~~~~~~~~~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~~~~~~~~ 354 (469)
..+|+++++ .|++++++|||.++|...... . ........+..+.++ +++++.++|+|++|+|++++.++.
T Consensus 141 ~~~e~~l~~----~g~~~tivrpg~~~g~~~~~~-~--~~~~~~~~~~~~~~~---g~g~~~~~~i~~~Dva~~~~~~l~ 210 (346)
T 3i6i_A 141 RRVRQLVEE----SGIPFTYICCNSIASWPYYNN-I--HPSEVLPPTDFFQIY---GDGNVKAYFVAGTDIGKFTMKTVD 210 (346)
T ss_dssp HHHHHHHHH----TTCCBEEEECCEESSCCCSCC--------CCCCSSCEEEE---TTSCCCEEEECHHHHHHHHHHHTT
T ss_pred HHHHHHHHH----cCCCEEEEEecccccccCccc-c--ccccccCCCceEEEc---cCCCceEEecCHHHHHHHHHHHHh
Confidence 999998876 589999999999999653321 1 111112255666777 778999999999999999999998
Q ss_pred cCCCCCCCCCceEEEeCC-CCcccHHHHHHHHHHHhCCCccceeecCCC-------C-----------------CCCCcc
Q 012176 355 SGGKKRGPAQLRVYNLGN-TSPVPVGRLVSILENLLNTKAKKHVIRMPR-------N-----------------GDVPYT 409 (469)
Q Consensus 355 ~~~~~~~~~~~~iyni~~-~~~vt~~el~~~i~~~~g~~~~~~~~~~~~-------~-----------------~~~~~~ 409 (469)
++ ...+++|++++ ++.+|+.|+++.+++.+|++.++...+... . ++...+
T Consensus 211 ~~-----~~~~~~~~i~g~~~~~s~~e~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~~ 285 (346)
T 3i6i_A 211 DV-----RTLNKSVHFRPSCNCLNINELASVWEKKIGRTLPRVTVTEDDLLAAAGENIIPQSVVAAFTHDIFIKGCQVNF 285 (346)
T ss_dssp CG-----GGTTEEEECCCGGGEECHHHHHHHHHHHHTSCCCEEEECHHHHHHHHHTCCTTHHHHHHHHHHHHTTCTTTSS
T ss_pred Cc-----cccCeEEEEeCCCCCCCHHHHHHHHHHHHCCCCceEecCHHHHHHHHhcCCChhhhHHHHHHHHhccCCCccc
Confidence 76 23358999985 589999999999999999988776665321 0 111101
Q ss_pred cC---ChHHHHHh-cCCCccCcHHHHHHHHHHHHHHHcCCCC
Q 012176 410 HA---NVSLAYKD-FGYKPTTDLAAGLRKFVKWYVSYYGIQP 447 (469)
Q Consensus 410 ~~---d~~ka~~~-LG~~p~~~l~~~l~~~v~~~~~~~~~~~ 447 (469)
.. +..++.+. -+++|+ +++|.|+++++|+.++++..+
T Consensus 286 ~~~~~~~~~~~~~~p~~~~t-~~~e~l~~~~~~~~~~~~~~~ 326 (346)
T 3i6i_A 286 SIDGPEDVEVTTLYPEDSFR-TVEECFGEYIVKMEEKQPTAD 326 (346)
T ss_dssp CCCSTTEEEHHHHSTTCCCC-CHHHHHHHHHCC---------
T ss_pred ccCCCCcccHHHhCCCCCcC-cHHHHHHHHHHHhhccccccc
Confidence 11 11123333 356665 899999999999998876554
|
| >3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=5.9e-31 Score=253.73 Aligned_cols=209 Identities=21% Similarity=0.175 Sum_probs=178.1
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCccE
Q 012176 117 NGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTH 196 (469)
Q Consensus 117 ~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~d~ 196 (469)
++|+||||||+|+||++++++|+++|++|++++|...... ..+++++.+|++|.++++++++++ |+
T Consensus 2 ~~k~vlVTGasg~IG~~la~~L~~~G~~V~~~~r~~~~~~------------~~~~~~~~~Dl~d~~~~~~~~~~~--D~ 67 (267)
T 3rft_A 2 AMKRLLVTGAAGQLGRVMRERLAPMAEILRLADLSPLDPA------------GPNEECVQCDLADANAVNAMVAGC--DG 67 (267)
T ss_dssp CEEEEEEESTTSHHHHHHHHHTGGGEEEEEEEESSCCCCC------------CTTEEEEECCTTCHHHHHHHHTTC--SE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhcCCEEEEEecCCcccc------------CCCCEEEEcCCCCHHHHHHHHcCC--CE
Confidence 3578999999999999999999999999999999765322 348999999999999999999976 99
Q ss_pred EEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcCccccCCC-CCCCCCCCCCCCCCCChHHHHHH
Q 012176 197 VLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLN-TQVPFSESHRTDQPASLYAATKK 275 (469)
Q Consensus 197 Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS~~vyg~~-~~~~~~E~~~~~~p~~~Y~~sK~ 275 (469)
||||||.. ...+++.++++|+.++.+++++|++.+.+ +||++||..+||.. ...+++|+.+. .+.+.|+.+|.
T Consensus 68 vi~~Ag~~----~~~~~~~~~~~N~~g~~~l~~a~~~~~~~-~iv~~SS~~~~g~~~~~~~~~e~~~~-~~~~~Y~~sK~ 141 (267)
T 3rft_A 68 IVHLGGIS----VEKPFEQILQGNIIGLYNLYEAARAHGQP-RIVFASSNHTIGYYPQTERLGPDVPA-RPDGLYGVSKC 141 (267)
T ss_dssp EEECCSCC----SCCCHHHHHHHHTHHHHHHHHHHHHTTCC-EEEEEEEGGGGTTSBTTSCBCTTSCC-CCCSHHHHHHH
T ss_pred EEECCCCc----CcCCHHHHHHHHHHHHHHHHHHHHHcCCC-EEEEEcchHHhCCCCCCCCCCCCCCC-CCCChHHHHHH
Confidence 99999973 34677889999999999999999999876 99999999999744 34577777766 78899999999
Q ss_pred HHHHHHHHHHHHhCCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceEecccHHHHHHHHHHHhcc
Q 012176 276 AGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGATGS 355 (469)
Q Consensus 276 ~~E~~~~~~~~~~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~~~~~~~~~ 355 (469)
++|.+++.++.++|+++++|||+.|||+. .++...++|++++|+++++..+++.
T Consensus 142 ~~e~~~~~~a~~~g~~~~~vr~~~v~~~~--------------------------~~~~~~~~~~~~~d~a~~~~~~~~~ 195 (267)
T 3rft_A 142 FGENLARMYFDKFGQETALVRIGSCTPEP--------------------------NNYRMLSTWFSHDDFVSLIEAVFRA 195 (267)
T ss_dssp HHHHHHHHHHHHHCCCEEEEEECBCSSSC--------------------------CSTTHHHHBCCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhCCeEEEEEeecccCCC--------------------------CCCCceeeEEcHHHHHHHHHHHHhC
Confidence 99999999999999999999999999972 2355667899999999999999887
Q ss_pred CCCCCCCCCceEEEeCCCCcc
Q 012176 356 GGKKRGPAQLRVYNLGNTSPV 376 (469)
Q Consensus 356 ~~~~~~~~~~~iyni~~~~~v 376 (469)
+. ....++++.++++.
T Consensus 196 ~~-----~~~~~~~~~s~~~~ 211 (267)
T 3rft_A 196 PV-----LGCPVVWGASANDA 211 (267)
T ss_dssp SC-----CCSCEEEECCCCTT
T ss_pred CC-----CCceEEEEeCCCCC
Confidence 63 22367777776543
|
| >3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=99.97 E-value=4.2e-31 Score=246.86 Aligned_cols=209 Identities=12% Similarity=0.083 Sum_probs=172.3
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCC-HHHHHHhhccCCccEE
Q 012176 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLND-APLLTKLFDVVPFTHV 197 (469)
Q Consensus 119 ~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d-~~~l~~~~~~~~~d~V 197 (469)
|+||||||+||||++++++|+++|++|++++|....... ..+++++.+|++| ++++.++++++ |+|
T Consensus 1 M~ilItGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~-----------~~~~~~~~~D~~d~~~~~~~~~~~~--d~v 67 (219)
T 3dqp_A 1 MKIFIVGSTGRVGKSLLKSLSTTDYQIYAGARKVEQVPQ-----------YNNVKAVHFDVDWTPEEMAKQLHGM--DAI 67 (219)
T ss_dssp CEEEEESTTSHHHHHHHHHHTTSSCEEEEEESSGGGSCC-----------CTTEEEEECCTTSCHHHHHTTTTTC--SEE
T ss_pred CeEEEECCCCHHHHHHHHHHHHCCCEEEEEECCccchhh-----------cCCceEEEecccCCHHHHHHHHcCC--CEE
Confidence 689999999999999999999999999999996542221 1589999999999 99999999977 999
Q ss_pred EEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcCccccCCCCCCCCCCCCCCCCCCChHHHHHHHH
Q 012176 198 LHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAG 277 (469)
Q Consensus 198 ih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y~~sK~~~ 277 (469)
|||||.... ..+++|+.++.+++++|++.+++ +||++||.++++.. ++.| ++. .|.+.|+.+|.++
T Consensus 68 i~~ag~~~~--------~~~~~n~~~~~~l~~a~~~~~~~-~iv~~SS~~~~~~~---~~~e-~~~-~~~~~Y~~sK~~~ 133 (219)
T 3dqp_A 68 INVSGSGGK--------SLLKVDLYGAVKLMQAAEKAEVK-RFILLSTIFSLQPE---KWIG-AGF-DALKDYYIAKHFA 133 (219)
T ss_dssp EECCCCTTS--------SCCCCCCHHHHHHHHHHHHTTCC-EEEEECCTTTTCGG---GCCS-HHH-HHTHHHHHHHHHH
T ss_pred EECCcCCCC--------CcEeEeHHHHHHHHHHHHHhCCC-EEEEECcccccCCC---cccc-ccc-ccccHHHHHHHHH
Confidence 999997431 25667999999999999999986 99999998877643 4444 333 5678999999999
Q ss_pred HHHHHHHHHHhCCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceEecccHHHHHHHHHHHhccCC
Q 012176 278 EEIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGATGSGG 357 (469)
Q Consensus 278 E~~~~~~~~~~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~~~~~~~~~~~ 357 (469)
|++++ +..|+++++|||+.+||+..... + .. ++..+++++++|+|++++.++.++
T Consensus 134 e~~~~---~~~~i~~~ilrp~~v~g~~~~~~---------------~-~~-----~~~~~~~i~~~Dva~~i~~~l~~~- 188 (219)
T 3dqp_A 134 DLYLT---KETNLDYTIIQPGALTEEEATGL---------------I-DI-----NDEVSASNTIGDVADTIKELVMTD- 188 (219)
T ss_dssp HHHHH---HSCCCEEEEEEECSEECSCCCSE---------------E-EE-----SSSCCCCEEHHHHHHHHHHHHTCG-
T ss_pred HHHHH---hccCCcEEEEeCceEecCCCCCc---------------c-cc-----CCCcCCcccHHHHHHHHHHHHhCc-
Confidence 99986 35699999999999999854321 1 12 367789999999999999999876
Q ss_pred CCCCCCCceEEEeCCCCcccHHHHHHH
Q 012176 358 KKRGPAQLRVYNLGNTSPVPVGRLVSI 384 (469)
Q Consensus 358 ~~~~~~~~~iyni~~~~~vt~~el~~~ 384 (469)
...+++||+++++ .++.|+++.
T Consensus 189 ----~~~g~~~~i~~g~-~~~~e~~~~ 210 (219)
T 3dqp_A 189 ----HSIGKVISMHNGK-TAIKEALES 210 (219)
T ss_dssp ----GGTTEEEEEEECS-EEHHHHHHT
T ss_pred ----cccCcEEEeCCCC-ccHHHHHHH
Confidence 2346999998886 999988764
|
| >3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.9e-30 Score=243.10 Aligned_cols=217 Identities=16% Similarity=0.140 Sum_probs=172.7
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCe-EEEEecCCCHHHHHHhhccCC
Q 012176 115 RPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQV-FIVEGDLNDAPLLTKLFDVVP 193 (469)
Q Consensus 115 ~~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v-~~v~~Dl~d~~~l~~~~~~~~ 193 (469)
..++|+||||||+|+||++++++|+++|++|++++|..+. ... +...++ +++.+|++ +.+.+++.++
T Consensus 18 ~l~~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~----~~~-----~~~~~~~~~~~~Dl~--~~~~~~~~~~- 85 (236)
T 3e8x_A 18 YFQGMRVLVVGANGKVARYLLSELKNKGHEPVAMVRNEEQ----GPE-----LRERGASDIVVANLE--EDFSHAFASI- 85 (236)
T ss_dssp ---CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSGGG----HHH-----HHHTTCSEEEECCTT--SCCGGGGTTC-
T ss_pred CcCCCeEEEECCCChHHHHHHHHHHhCCCeEEEEECChHH----HHH-----HHhCCCceEEEcccH--HHHHHHHcCC-
Confidence 3678999999999999999999999999999999996431 111 122378 99999999 7788888876
Q ss_pred ccEEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcCccccCCCCCCCCCCCCCCCCCCChHHHH
Q 012176 194 FTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAAT 273 (469)
Q Consensus 194 ~d~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y~~s 273 (469)
|+||||||... ..+++..+++|+.++.+++++|++.+++ +||++||.+.+... .++ .+...|+.+
T Consensus 86 -D~vi~~ag~~~----~~~~~~~~~~n~~~~~~l~~a~~~~~~~-~iv~~SS~~~~~~~-------~~~--~~~~~Y~~s 150 (236)
T 3e8x_A 86 -DAVVFAAGSGP----HTGADKTILIDLWGAIKTIQEAEKRGIK-RFIMVSSVGTVDPD-------QGP--MNMRHYLVA 150 (236)
T ss_dssp -SEEEECCCCCT----TSCHHHHHHTTTHHHHHHHHHHHHHTCC-EEEEECCTTCSCGG-------GSC--GGGHHHHHH
T ss_pred -CEEEECCCCCC----CCCccccchhhHHHHHHHHHHHHHcCCC-EEEEEecCCCCCCC-------CCh--hhhhhHHHH
Confidence 99999999743 2578889999999999999999999876 99999996554321 111 356789999
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceEecccHHHHHHHHHHHh
Q 012176 274 KKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGAT 353 (469)
Q Consensus 274 K~~~E~~~~~~~~~~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~~~~~~~ 353 (469)
|.++|.+++ ..|+++++||||.|||+.... .+... ......+++++++|+|++++.++
T Consensus 151 K~~~e~~~~----~~gi~~~~lrpg~v~~~~~~~---------------~~~~~---~~~~~~~~~i~~~Dva~~~~~~~ 208 (236)
T 3e8x_A 151 KRLADDELK----RSSLDYTIVRPGPLSNEESTG---------------KVTVS---PHFSEITRSITRHDVAKVIAELV 208 (236)
T ss_dssp HHHHHHHHH----HSSSEEEEEEECSEECSCCCS---------------EEEEE---SSCSCCCCCEEHHHHHHHHHHHT
T ss_pred HHHHHHHHH----HCCCCEEEEeCCcccCCCCCC---------------eEEec---cCCCcccCcEeHHHHHHHHHHHh
Confidence 999999887 469999999999999985421 22223 33556789999999999999999
Q ss_pred ccCCCCCCCCCceEEEeCCCCcccHHHHHHHHH
Q 012176 354 GSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILE 386 (469)
Q Consensus 354 ~~~~~~~~~~~~~iyni~~~~~vt~~el~~~i~ 386 (469)
+++ ...+++||++++ .+++.|+++.+.
T Consensus 209 ~~~-----~~~g~~~~v~~~-~~~~~e~~~~i~ 235 (236)
T 3e8x_A 209 DQQ-----HTIGKTFEVLNG-DTPIAKVVEQLG 235 (236)
T ss_dssp TCG-----GGTTEEEEEEEC-SEEHHHHHHTC-
T ss_pred cCc-----cccCCeEEEeCC-CcCHHHHHHHhc
Confidence 876 245699999988 499999998765
|
| >3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.9e-29 Score=244.24 Aligned_cols=224 Identities=14% Similarity=0.152 Sum_probs=171.0
Q ss_pred CEEEEEcCCChhHHHHHHHHHHC-CCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCccEE
Q 012176 119 MTVLVTGAAGFVGSHCSLALKKR-GDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTHV 197 (469)
Q Consensus 119 ~~VlVtGatG~IG~~l~~~L~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~d~V 197 (469)
|+|||||||||||++++++|++. |++|++++|+..... .+...+++++.+|++|++.+.++++++ |+|
T Consensus 1 M~ilVtGatG~iG~~l~~~L~~~~g~~V~~~~R~~~~~~---------~~~~~~v~~~~~D~~d~~~l~~~~~~~--d~v 69 (289)
T 3e48_A 1 MNIMLTGATGHLGTHITNQAIANHIDHFHIGVRNVEKVP---------DDWRGKVSVRQLDYFNQESMVEAFKGM--DTV 69 (289)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHTTCTTEEEEESSGGGSC---------GGGBTTBEEEECCTTCHHHHHHHTTTC--SEE
T ss_pred CEEEEEcCCchHHHHHHHHHhhCCCCcEEEEECCHHHHH---------HhhhCCCEEEEcCCCCHHHHHHHHhCC--CEE
Confidence 67999999999999999999998 999999999654221 123458999999999999999999988 999
Q ss_pred EEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcCccccCCCCCCCCCCCCCCCCCCChHHHHHHHH
Q 012176 198 LHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAG 277 (469)
Q Consensus 198 ih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y~~sK~~~ 277 (469)
||+|+..... ..|+.++.+++++|++.+++ +|||+||.+. ... .+. .+...+..+
T Consensus 70 i~~a~~~~~~----------~~~~~~~~~l~~aa~~~gv~-~iv~~Ss~~~---~~~----------~~~-~~~~~~~~~ 124 (289)
T 3e48_A 70 VFIPSIIHPS----------FKRIPEVENLVYAAKQSGVA-HIIFIGYYAD---QHN----------NPF-HMSPYFGYA 124 (289)
T ss_dssp EECCCCCCSH----------HHHHHHHHHHHHHHHHTTCC-EEEEEEESCC---STT----------CCS-TTHHHHHHH
T ss_pred EEeCCCCccc----------hhhHHHHHHHHHHHHHcCCC-EEEEEcccCC---CCC----------CCC-ccchhHHHH
Confidence 9999874321 34899999999999999987 9999999442 111 111 122223344
Q ss_pred HHHHHHHHHHhCCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceEecccHHHHHHHHHHHhccCC
Q 012176 278 EEIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGATGSGG 357 (469)
Q Consensus 278 E~~~~~~~~~~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~~~~~~~~~~~ 357 (469)
|..+. ..|+++++|||+.+||+. .. ++..+..+... .. ..+++.++|+|++|+|++++.++.++.
T Consensus 125 e~~~~----~~g~~~~ilrp~~~~~~~------~~-~~~~~~~~~~~-~~---~~g~~~~~~i~~~Dva~~~~~~l~~~~ 189 (289)
T 3e48_A 125 SRLLS----TSGIDYTYVRMAMYMDPL------KP-YLPELMNMHKL-IY---PAGDGRINYITRNDIARGVIAIIKNPD 189 (289)
T ss_dssp HHHHH----HHCCEEEEEEECEESTTH------HH-HHHHHHHHTEE-CC---CCTTCEEEEECHHHHHHHHHHHHHCGG
T ss_pred HHHHH----HcCCCEEEEecccccccc------HH-HHHHHHHCCCE-ec---CCCCceeeeEEHHHHHHHHHHHHcCCC
Confidence 44333 469999999999999972 22 23333333322 22 347889999999999999999998763
Q ss_pred CCCCCCCceEEEeCCCCcccHHHHHHHHHHHhCCCccceeec
Q 012176 358 KKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIR 399 (469)
Q Consensus 358 ~~~~~~~~~iyni~~~~~vt~~el~~~i~~~~g~~~~~~~~~ 399 (469)
..+++||++ ++.+|+.|+++.+.+.+|++..+..++
T Consensus 190 -----~~g~~~~~~-~~~~s~~e~~~~~~~~~g~~~~~~~~~ 225 (289)
T 3e48_A 190 -----TWGKRYLLS-GYSYDMKELAAILSEASGTEIKYEPVS 225 (289)
T ss_dssp -----GTTCEEEEC-CEEEEHHHHHHHHHHHHTSCCEECCCC
T ss_pred -----cCCceEEeC-CCcCCHHHHHHHHHHHHCCceeEEeCC
Confidence 226899999 999999999999999999876554443
|
| >3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.4e-29 Score=235.27 Aligned_cols=218 Identities=11% Similarity=0.016 Sum_probs=162.0
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCccEEE
Q 012176 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTHVL 198 (469)
Q Consensus 119 ~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~d~Vi 198 (469)
|+||||||+||||++|+++|+++|++|++++|... ....+...+++++.+|++|++. ++++++ |+||
T Consensus 1 MkilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~---------~~~~~~~~~~~~~~~D~~d~~~--~~~~~~--d~vi 67 (224)
T 3h2s_A 1 MKIAVLGATGRAGSAIVAEARRRGHEVLAVVRDPQ---------KAADRLGATVATLVKEPLVLTE--ADLDSV--DAVV 67 (224)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH---------HHHHHTCTTSEEEECCGGGCCH--HHHTTC--SEEE
T ss_pred CEEEEEcCCCHHHHHHHHHHHHCCCEEEEEEeccc---------ccccccCCCceEEecccccccH--hhcccC--CEEE
Confidence 68999999999999999999999999999999432 1222234589999999999888 777777 9999
Q ss_pred EcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcCccccCCCCC---CCCCCCCCCCCCCChHHHHHH
Q 012176 199 HLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQ---VPFSESHRTDQPASLYAATKK 275 (469)
Q Consensus 199 h~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS~~vyg~~~~---~~~~E~~~~~~p~~~Y~~sK~ 275 (469)
||||.... .. ..+.|+.++.+++++|++.+ + +||++||.+++..... .+.+|...+ .|.+.|+.+|.
T Consensus 68 ~~ag~~~~---~~----~~~~n~~~~~~l~~a~~~~~-~-~~v~~SS~~~~~~~~~~~~~~~~~~~~~-~~~~~y~~sK~ 137 (224)
T 3h2s_A 68 DALSVPWG---SG----RGYLHLDFATHLVSLLRNSD-T-LAVFILGSASLAMPGADHPMILDFPESA-ASQPWYDGALY 137 (224)
T ss_dssp ECCCCCTT---SS----CTHHHHHHHHHHHHTCTTCC-C-EEEEECCGGGSBCTTCSSCGGGGCCGGG-GGSTTHHHHHH
T ss_pred ECCccCCC---cc----hhhHHHHHHHHHHHHHHHcC-C-cEEEEecceeeccCCCCccccccCCCCC-ccchhhHHHHH
Confidence 99997521 11 24679999999999999998 5 9999999866543322 244444444 45789999999
Q ss_pred HHHHHHHHHHHHhCCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceEecccHHHHHHHHHHHhcc
Q 012176 276 AGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGATGS 355 (469)
Q Consensus 276 ~~E~~~~~~~~~~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~~~~~~~~~ 355 (469)
.+|. +..+.+..++++++|||+.||||+.... + ......+.. .....++++++|+|++++.++++
T Consensus 138 ~~e~-~~~~~~~~~i~~~ivrp~~v~g~~~~~~-~-------~~~~~~~~~------~~~~~~~i~~~DvA~~~~~~l~~ 202 (224)
T 3h2s_A 138 QYYE-YQFLQMNANVNWIGISPSEAFPSGPATS-Y-------VAGKDTLLV------GEDGQSHITTGNMALAILDQLEH 202 (224)
T ss_dssp HHHH-HHHHTTCTTSCEEEEEECSBCCCCCCCC-E-------EEESSBCCC------CTTSCCBCCHHHHHHHHHHHHHS
T ss_pred HHHH-HHHHHhcCCCcEEEEcCccccCCCcccC-c-------eeccccccc------CCCCCceEeHHHHHHHHHHHhcC
Confidence 9994 4556556799999999999999944322 1 011112211 34457899999999999999998
Q ss_pred CCCCCCCCCceEEEeCCCCcccHH
Q 012176 356 GGKKRGPAQLRVYNLGNTSPVPVG 379 (469)
Q Consensus 356 ~~~~~~~~~~~iyni~~~~~vt~~ 379 (469)
+ ...+++|++++.+..++.
T Consensus 203 ~-----~~~g~~~~~~~~~~~~~~ 221 (224)
T 3h2s_A 203 P-----TAIRDRIVVRDADLEHHH 221 (224)
T ss_dssp C-----CCTTSEEEEEECC-----
T ss_pred c-----cccCCEEEEecCcchhcc
Confidence 7 455699999987655543
|
| >3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.96 E-value=4.3e-29 Score=232.76 Aligned_cols=218 Identities=12% Similarity=0.150 Sum_probs=145.3
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCccEEE
Q 012176 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTHVL 198 (469)
Q Consensus 119 ~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~d~Vi 198 (469)
|+||||||+||||++|+++|+++|++|++++|+.+ ....+. .+++++.+|++|++. +++.++ |+||
T Consensus 1 MkvlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~---------~~~~~~-~~~~~~~~D~~d~~~--~~~~~~--d~vi 66 (221)
T 3ew7_A 1 MKIGIIGATGRAGSRILEEAKNRGHEVTAIVRNAG---------KITQTH-KDINILQKDIFDLTL--SDLSDQ--NVVV 66 (221)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCSH---------HHHHHC-SSSEEEECCGGGCCH--HHHTTC--SEEE
T ss_pred CeEEEEcCCchhHHHHHHHHHhCCCEEEEEEcCch---------hhhhcc-CCCeEEeccccChhh--hhhcCC--CEEE
Confidence 68999999999999999999999999999999542 111112 589999999999887 777776 9999
Q ss_pred EcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcCccccCCCC-CCCCCCCCCCCCCCChHHHHHHHH
Q 012176 199 HLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNT-QVPFSESHRTDQPASLYAATKKAG 277 (469)
Q Consensus 199 h~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS~~vyg~~~-~~~~~E~~~~~~p~~~Y~~sK~~~ 277 (469)
||||.... ..+.|+.++.+++++|++.+.+ +||++||.++|.... ..+..|+++. .|.+.|+.+|..+
T Consensus 67 ~~ag~~~~---------~~~~~~~~~~~l~~a~~~~~~~-~~v~~SS~~~~~~~~~~~~~~~~~~~-~~~~~y~~~k~~~ 135 (221)
T 3ew7_A 67 DAYGISPD---------EAEKHVTSLDHLISVLNGTVSP-RLLVVGGAASLQIDEDGNTLLESKGL-REAPYYPTARAQA 135 (221)
T ss_dssp ECCCSSTT---------TTTSHHHHHHHHHHHHCSCCSS-EEEEECCCC--------------------CCCSCCHHHHH
T ss_pred ECCcCCcc---------ccchHHHHHHHHHHHHHhcCCc-eEEEEecceEEEcCCCCccccccCCC-CCHHHHHHHHHHH
Confidence 99997321 1345999999999999999876 999999987664433 3345555544 6778899999999
Q ss_pred HHHHHHHHH-HhCCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceEecccHHHHHHHHHHHhccC
Q 012176 278 EEIAHTYNH-IYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGATGSG 356 (469)
Q Consensus 278 E~~~~~~~~-~~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~~~~~~~~~~ 356 (469)
|.+ ..+.. ..|+++++|||+.+|||+..... + ...+..+.+. +++ .++++++|+|++++.+++++
T Consensus 136 e~~-~~~~~~~~gi~~~ivrp~~v~g~~~~~~~----~---~~~~~~~~~~---~~~---~~~i~~~Dva~~~~~~l~~~ 201 (221)
T 3ew7_A 136 KQL-EHLKSHQAEFSWTYISPSAMFEPGERTGD----Y---QIGKDHLLFG---SDG---NSFISMEDYAIAVLDEIERP 201 (221)
T ss_dssp HHH-HHHHTTTTTSCEEEEECSSCCCCC----------------------------------CCCHHHHHHHHHHHHHSC
T ss_pred HHH-HHHHhhccCccEEEEeCcceecCCCccCc----e---Eeccccceec---CCC---CceEeHHHHHHHHHHHHhCc
Confidence 986 34443 57999999999999998432211 1 1123333333 222 36999999999999999987
Q ss_pred CCCCCCCCceEEEeCCCCcccHHH
Q 012176 357 GKKRGPAQLRVYNLGNTSPVPVGR 380 (469)
Q Consensus 357 ~~~~~~~~~~iyni~~~~~vt~~e 380 (469)
...+++||++++.+.+..|
T Consensus 202 -----~~~g~~~~~~~~~~~~~~~ 220 (221)
T 3ew7_A 202 -----NHLNEHFTVAGKLEHHHHH 220 (221)
T ss_dssp -----SCTTSEEECCC--------
T ss_pred -----cccCCEEEECCCCcccccc
Confidence 4556999999988776654
|
| >1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.2e-28 Score=234.33 Aligned_cols=234 Identities=20% Similarity=0.194 Sum_probs=175.1
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHC--CCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCC
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKR--GDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVP 193 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~--G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~ 193 (469)
.++|+||||||+|+||++++++|+++ |++|++++|... +. .. + ..+++++.+|++|.++++++++++
T Consensus 2 ~~~~~ilVtGasG~iG~~l~~~l~~~~~g~~V~~~~r~~~-------~~-~~-~-~~~~~~~~~D~~d~~~~~~~~~~~- 70 (253)
T 1xq6_A 2 ANLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQ-------GK-EK-I-GGEADVFIGDITDADSINPAFQGI- 70 (253)
T ss_dssp CSCCEEEEESTTSHHHHHHHHHHHHTTTTCEEEEEESCHH-------HH-HH-T-TCCTTEEECCTTSHHHHHHHHTTC-
T ss_pred CCCCEEEEEcCCcHHHHHHHHHHHhcCCCcEEEEEEcCCC-------ch-hh-c-CCCeeEEEecCCCHHHHHHHHcCC-
Confidence 45789999999999999999999999 899999999431 11 11 1 347889999999999999999976
Q ss_pred ccEEEEcccccChh-------------hhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcCccccCCCCCCCCCCC
Q 012176 194 FTHVLHLAAQAGVR-------------YAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSES 260 (469)
Q Consensus 194 ~d~Vih~Aa~~~~~-------------~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS~~vyg~~~~~~~~E~ 260 (469)
|+||||||..... ...++....+++|+.++.+++++|++.+.+ +||++||.+++.... +..
T Consensus 71 -d~vi~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~iv~~SS~~~~~~~~--~~~-- 144 (253)
T 1xq6_A 71 -DALVILTSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQIDAAKVAGVK-HIVVVGSMGGTNPDH--PLN-- 144 (253)
T ss_dssp -SEEEECCCCCCEECTTCCTTSSCCCCEECCTTCSHHHHTTHHHHHHHHHHHHHTCS-EEEEEEETTTTCTTC--GGG--
T ss_pred -CEEEEeccccccccccccccccccchhhccccccceeeeHHHHHHHHHHHHHcCCC-EEEEEcCccCCCCCC--ccc--
Confidence 9999999974321 111222357899999999999999999876 999999988753211 100
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHhCCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceEecc
Q 012176 261 HRTDQPASLYAATKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFT 340 (469)
Q Consensus 261 ~~~~~p~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v 340 (469)
. ...+.|+.+|.++|.++++ .|+++++|||+.+||+....... ..+....++ ....+++
T Consensus 145 --~-~~~~~y~~sK~~~e~~~~~----~~i~~~~vrpg~v~~~~~~~~~~--------~~~~~~~~~------~~~~~~~ 203 (253)
T 1xq6_A 145 --K-LGNGNILVWKRKAEQYLAD----SGTPYTIIRAGGLLDKEGGVREL--------LVGKDDELL------QTDTKTV 203 (253)
T ss_dssp --G-GGGCCHHHHHHHHHHHHHT----SSSCEEEEEECEEECSCSSSSCE--------EEESTTGGG------GSSCCEE
T ss_pred --c-ccchhHHHHHHHHHHHHHh----CCCceEEEecceeecCCcchhhh--------hccCCcCCc------CCCCcEE
Confidence 0 1124588899999998865 69999999999999986532111 001101111 1135689
Q ss_pred cHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCC---cccHHHHHHHHHHHhCCC
Q 012176 341 YIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTS---PVPVGRLVSILENLLNTK 392 (469)
Q Consensus 341 ~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~---~vt~~el~~~i~~~~g~~ 392 (469)
|++|+|++++.+++++ ...+++||+++++ ++|+.|+++.+.+.+|++
T Consensus 204 ~~~Dva~~~~~~~~~~-----~~~g~~~~i~~~~~~~~~s~~e~~~~~~~~~g~~ 253 (253)
T 1xq6_A 204 PRADVAEVCIQALLFE-----EAKNKAFDLGSKPEGTSTPTKDFKALFSQVTSRF 253 (253)
T ss_dssp EHHHHHHHHHHHTTCG-----GGTTEEEEEEECCTTTSCCCCCHHHHHHTCCCCC
T ss_pred cHHHHHHHHHHHHcCc-----cccCCEEEecCCCcCCCCCHHHHHHHHHHHhCCC
Confidence 9999999999999875 2345899999864 599999999999998863
|
| >2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A | Back alignment and structure |
|---|
Probab=99.96 E-value=6e-29 Score=243.25 Aligned_cols=236 Identities=14% Similarity=0.088 Sum_probs=180.5
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHCC-CcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCccE
Q 012176 118 GMTVLVTGAAGFVGSHCSLALKKRG-DGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTH 196 (469)
Q Consensus 118 ~~~VlVtGatG~IG~~l~~~L~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~d~ 196 (469)
+|+|+||||||+||++++++|+++| ++|++++|+.... ....+...+++++.+|++|++++.++++++ |+
T Consensus 5 ~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~R~~~~~-------~~~~l~~~~~~~~~~D~~d~~~l~~~~~~~--d~ 75 (299)
T 2wm3_A 5 KKLVVVFGGTGAQGGSVARTLLEDGTFKVRVVTRNPRKK-------AAKELRLQGAEVVQGDQDDQVIMELALNGA--YA 75 (299)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHCSSEEEEEESCTTSH-------HHHHHHHTTCEEEECCTTCHHHHHHHHTTC--SE
T ss_pred CCEEEEECCCchHHHHHHHHHHhcCCceEEEEEcCCCCH-------HHHHHHHCCCEEEEecCCCHHHHHHHHhcC--CE
Confidence 5899999999999999999999999 9999999965421 111122348999999999999999999987 99
Q ss_pred EEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcCccccCCCCCCCCCCCCCCCCCCChHHHHHHH
Q 012176 197 VLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKA 276 (469)
Q Consensus 197 Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y~~sK~~ 276 (469)
|||+++.... . ..+.|+.++.+++++|++.+++ +||++|+.++|+.... .+...|+.+|..
T Consensus 76 vi~~a~~~~~----~----~~~~~~~~~~~~~~aa~~~gv~-~iv~~S~~~~~~~~~~----------~~~~~y~~sK~~ 136 (299)
T 2wm3_A 76 TFIVTNYWES----C----SQEQEVKQGKLLADLARRLGLH-YVVYSGLENIKKLTAG----------RLAAAHFDGKGE 136 (299)
T ss_dssp EEECCCHHHH----T----CHHHHHHHHHHHHHHHHHHTCS-EEEECCCCCHHHHTTT----------SCCCHHHHHHHH
T ss_pred EEEeCCCCcc----c----cchHHHHHHHHHHHHHHHcCCC-EEEEEcCccccccCCC----------cccCchhhHHHH
Confidence 9999985211 0 1346888999999999999987 9999888888753211 234789999999
Q ss_pred HHHHHHHHHHHhCCcEEEEeecceecCCCCCCChHHHHHHH-HHcCCceEEEeeCCCCcceEecccHHHHHHHHHHHhcc
Q 012176 277 GEEIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTKD-ILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGATGS 355 (469)
Q Consensus 277 ~E~~~~~~~~~~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~~~~~~~~~ 355 (469)
+|+++++ .|+++++|||+.+||+.... ++.. ...|+...+.. ..++..++|+|++|+|++++.++.+
T Consensus 137 ~e~~~~~----~gi~~~ilrp~~~~~~~~~~------~~~~~~~~g~~~~~~~--~~~~~~~~~i~~~Dva~~~~~~l~~ 204 (299)
T 2wm3_A 137 VEEYFRD----IGVPMTSVRLPCYFENLLSH------FLPQKAPDGKSYLLSL--PTGDVPMDGMSVSDLGPVVLSLLKM 204 (299)
T ss_dssp HHHHHHH----HTCCEEEEECCEEGGGGGTT------TCCEECTTSSSEEECC--CCTTSCEEEECGGGHHHHHHHHHHS
T ss_pred HHHHHHH----CCCCEEEEeecHHhhhchhh------cCCcccCCCCEEEEEe--cCCCCccceecHHHHHHHHHHHHcC
Confidence 9998876 59999999999999974321 1111 12233222211 2367889999999999999999976
Q ss_pred CCCCCCCCCceEEEeCCCCcccHHHHHHHHHHHhCCCccceee
Q 012176 356 GGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVI 398 (469)
Q Consensus 356 ~~~~~~~~~~~iyni~~~~~vt~~el~~~i~~~~g~~~~~~~~ 398 (469)
+. ...+++||+++ +.+|+.|+++.+.+.+|++..+..+
T Consensus 205 ~~----~~~g~~~~~~g-~~~s~~e~~~~~~~~~g~~~~~~~~ 242 (299)
T 2wm3_A 205 PE----KYVGQNIGLST-CRHTAEEYAALLTKHTRKVVHDAKM 242 (299)
T ss_dssp HH----HHTTCEEECCS-EEECHHHHHHHHHHHHSSCEEECCC
T ss_pred hh----hhCCeEEEeee-ccCCHHHHHHHHHHHHCCCceeEec
Confidence 42 12348999987 6799999999999999988654433
|
| >2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.95 E-value=9.4e-29 Score=229.63 Aligned_cols=206 Identities=12% Similarity=0.043 Sum_probs=165.8
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCC--cEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCc
Q 012176 117 NGMTVLVTGAAGFVGSHCSLALKKRGD--GVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPF 194 (469)
Q Consensus 117 ~~~~VlVtGatG~IG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~ 194 (469)
.+|+|+||||+|+||++++++|+++|+ +|++++|.... ...+++++.+|++|.+++.+++ +
T Consensus 4 ~~~~vlVtGatG~iG~~l~~~l~~~g~~~~V~~~~r~~~~-------------~~~~~~~~~~D~~~~~~~~~~~----~ 66 (215)
T 2a35_A 4 TPKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALA-------------EHPRLDNPVGPLAELLPQLDGS----I 66 (215)
T ss_dssp CCCEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSCCC-------------CCTTEECCBSCHHHHGGGCCSC----C
T ss_pred CCceEEEECCCcHHHHHHHHHHHhCCCCCeEEEEeCCCcc-------------cCCCceEEeccccCHHHHHHhh----h
Confidence 458999999999999999999999998 99999997653 1347889999999999888887 5
Q ss_pred cEEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcCccccCCCCCCCCCCCCCCCCCCChHHHHH
Q 012176 195 THVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATK 274 (469)
Q Consensus 195 d~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y~~sK 274 (469)
|+|||+||... ....+++..+++|+.++.+++++|++.+.+ +||++||.++|+ .+.+.|+.+|
T Consensus 67 d~vi~~a~~~~--~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~v~~Ss~~~~~--------------~~~~~y~~sK 129 (215)
T 2a35_A 67 DTAFCCLGTTI--KEAGSEEAFRAVDFDLPLAVGKRALEMGAR-HYLVVSALGADA--------------KSSIFYNRVK 129 (215)
T ss_dssp SEEEECCCCCH--HHHSSHHHHHHHHTHHHHHHHHHHHHTTCC-EEEEECCTTCCT--------------TCSSHHHHHH
T ss_pred cEEEECeeecc--ccCCCHHHHHHhhHHHHHHHHHHHHHcCCC-EEEEECCcccCC--------------CCccHHHHHH
Confidence 99999999743 234678889999999999999999999886 999999999885 2457899999
Q ss_pred HHHHHHHHHHHHHhCCc-EEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceEecccHHHHHHHHHHHh
Q 012176 275 KAGEEIAHTYNHIYGLA-LTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGAT 353 (469)
Q Consensus 275 ~~~E~~~~~~~~~~gi~-~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~~~~~~~ 353 (469)
.++|++++. .|++ ++++||+.+|||+.... + +..+. +...++. +..++++|++|+|++++.++
T Consensus 130 ~~~e~~~~~----~~~~~~~~vrp~~v~g~~~~~~-~----~~~~~-~~~~~~~------~~~~~~i~~~Dva~~~~~~~ 193 (215)
T 2a35_A 130 GELEQALQE----QGWPQLTIARPSLLFGPREEFR-L----AEILA-APIARIL------PGKYHGIEACDLARALWRLA 193 (215)
T ss_dssp HHHHHHHTT----SCCSEEEEEECCSEESTTSCEE-G----GGGTT-CCCC----------CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH----cCCCeEEEEeCceeeCCCCcch-H----HHHHH-Hhhhhcc------CCCcCcEeHHHHHHHHHHHH
Confidence 999998876 4899 99999999999976521 1 12221 2222222 12679999999999999999
Q ss_pred ccCCCCCCCCCceEEEeCCCCcccHH
Q 012176 354 GSGGKKRGPAQLRVYNLGNTSPVPVG 379 (469)
Q Consensus 354 ~~~~~~~~~~~~~iyni~~~~~vt~~ 379 (469)
+++. +++||+++++.+++.
T Consensus 194 ~~~~-------~~~~~i~~~~~~~~~ 212 (215)
T 2a35_A 194 LEEG-------KGVRFVESDELRKLG 212 (215)
T ss_dssp TCCC-------SEEEEEEHHHHHHHH
T ss_pred hcCC-------CCceEEcHHHHHHhh
Confidence 8762 489999987766554
|
| >1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.95 E-value=5.9e-28 Score=237.43 Aligned_cols=240 Identities=16% Similarity=0.173 Sum_probs=178.6
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCccEE
Q 012176 118 GMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTHV 197 (469)
Q Consensus 118 ~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~d~V 197 (469)
+|+|+||||||+||++++++|+++|++|++++|......+...+.. ..+...+++++.+|++|++++.++++++ |+|
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~-~~~~~~~~~~~~~D~~d~~~l~~~~~~~--d~v 80 (313)
T 1qyd_A 4 KSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQML-LYFKQLGAKLIEASLDDHQRLVDALKQV--DVV 80 (313)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCCSSCHHHHHHH-HHHHTTTCEEECCCSSCHHHHHHHHTTC--SEE
T ss_pred CCEEEEEcCCcHHHHHHHHHHHhCCCcEEEEECCCcccchhHHHHH-HHHHhCCeEEEeCCCCCHHHHHHHHhCC--CEE
Confidence 5789999999999999999999999999999997643322211111 1123458999999999999999999987 999
Q ss_pred EEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcC-CCCeEEEEcCccccCCCCCCCCCCCCCCCCC-CChHHHHHH
Q 012176 198 LHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVN-PQPSIVWASSSSVYGLNTQVPFSESHRTDQP-ASLYAATKK 275 (469)
Q Consensus 198 ih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~-~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p-~~~Y~~sK~ 275 (469)
||+++..... .|+.++.+++++|++.| ++ +||+ | +||.....+ +.+. .| ...| .+|.
T Consensus 81 i~~a~~~~~~-----------~~~~~~~~l~~aa~~~g~v~-~~v~-S---~~g~~~~~~---~~~~-~p~~~~y-~sK~ 139 (313)
T 1qyd_A 81 ISALAGGVLS-----------HHILEQLKLVEAIKEAGNIK-RFLP-S---EFGMDPDIM---EHAL-QPGSITF-IDKR 139 (313)
T ss_dssp EECCCCSSSS-----------TTTTTHHHHHHHHHHSCCCS-EEEC-S---CCSSCTTSC---CCCC-SSTTHHH-HHHH
T ss_pred EECCccccch-----------hhHHHHHHHHHHHHhcCCCc-eEEe-c---CCcCCcccc---ccCC-CCCcchH-HHHH
Confidence 9999874321 26788999999999998 76 9985 3 555332211 1121 23 4568 9999
Q ss_pred HHHHHHHHHHHHhCCcEEEEeecceecCCCCCCChHHHHHHH----HHcCCceEEEeeCCCCcceEecccHHHHHHHHHH
Q 012176 276 AGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTKD----ILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVG 351 (469)
Q Consensus 276 ~~E~~~~~~~~~~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~----~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~~~~~ 351 (469)
.+|+++++ .|+++++|||+.++|+.... +... ...++.+.++ ++++..++++|++|+|++++.
T Consensus 140 ~~e~~~~~----~g~~~~ilrp~~~~~~~~~~------~~~~~~~~~~~~~~~~~~---~~g~~~~~~i~~~Dva~~~~~ 206 (313)
T 1qyd_A 140 KVRRAIEA----ASIPYTYVSSNMFAGYFAGS------LAQLDGHMMPPRDKVLIY---GDGNVKGIWVDEDDVGTYTIK 206 (313)
T ss_dssp HHHHHHHH----TTCCBCEEECCEEHHHHTTT------SSCTTCCSSCCSSEECCB---TTSCSEEEEECHHHHHHHHHH
T ss_pred HHHHHHHh----cCCCeEEEEeceeccccccc------cccccccccCCCCeEEEe---CCCCceEEEEEHHHHHHHHHH
Confidence 99998864 58999999999998852211 1110 1233444444 668899999999999999999
Q ss_pred HhccCCCCCCCCCceEEEeCC-CCcccHHHHHHHHHHHhCCCccceeec
Q 012176 352 ATGSGGKKRGPAQLRVYNLGN-TSPVPVGRLVSILENLLNTKAKKHVIR 399 (469)
Q Consensus 352 ~~~~~~~~~~~~~~~iyni~~-~~~vt~~el~~~i~~~~g~~~~~~~~~ 399 (469)
++.++. ..+++|++.+ ++.+|+.|+++.+.+.+|++..+..+|
T Consensus 207 ~l~~~~-----~~~~~~~~~g~~~~~s~~e~~~~~~~~~g~~~~~~~~~ 250 (313)
T 1qyd_A 207 SIDDPQ-----TLNKTMYIRPPMNILSQKEVIQIWERLSEQNLDKIYIS 250 (313)
T ss_dssp HTTCGG-----GSSSEEECCCGGGEEEHHHHHHHHHHHHTCCCEECCBC
T ss_pred HHhCcc-----cCCceEEEeCCCCccCHHHHHHHHHHhcCCCCceEECC
Confidence 998752 2347788776 478999999999999999887655544
|
| >1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=6.9e-28 Score=241.58 Aligned_cols=237 Identities=17% Similarity=0.130 Sum_probs=178.0
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEec-CCCHHHHHHhhccCCcc
Q 012176 117 NGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGD-LNDAPLLTKLFDVVPFT 195 (469)
Q Consensus 117 ~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~D-l~d~~~l~~~~~~~~~d 195 (469)
.+|+|+|||||||||++|+++|+++|++|++++|+.+.. . ........+++++.+| ++|++++.++++++ |
T Consensus 4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~----~--~~~l~~~~~v~~v~~D~l~d~~~l~~~~~~~--d 75 (352)
T 1xgk_A 4 QKKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGL----I--AEELQAIPNVTLFQGPLLNNVPLMDTLFEGA--H 75 (352)
T ss_dssp CCCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSCSH----H--HHHHHTSTTEEEEESCCTTCHHHHHHHHTTC--S
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCChh----h--HHHHhhcCCcEEEECCccCCHHHHHHHHhcC--C
Confidence 367899999999999999999999999999999965421 0 1111223479999999 99999999999987 9
Q ss_pred EEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcC-CCCeEEEEcCcc--ccCCCCCCCCCCCCCCCCCCChHHH
Q 012176 196 HVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVN-PQPSIVWASSSS--VYGLNTQVPFSESHRTDQPASLYAA 272 (469)
Q Consensus 196 ~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~-~~~~~V~~SS~~--vyg~~~~~~~~E~~~~~~p~~~Y~~ 272 (469)
+|||+++... . +.|..+ .+++++|++.+ ++ +|||+||.+ .|+. .+...|+.
T Consensus 76 ~Vi~~a~~~~-----~------~~~~~~-~~l~~aa~~~g~v~-~~V~~SS~~~~~~~~-------------~~~~~y~~ 129 (352)
T 1xgk_A 76 LAFINTTSQA-----G------DEIAIG-KDLADAAKRAGTIQ-HYIYSSMPDHSLYGP-------------WPAVPMWA 129 (352)
T ss_dssp EEEECCCSTT-----S------CHHHHH-HHHHHHHHHHSCCS-EEEEEECCCGGGTSS-------------CCCCTTTH
T ss_pred EEEEcCCCCC-----c------HHHHHH-HHHHHHHHHcCCcc-EEEEeCCccccccCC-------------CCCccHHH
Confidence 9999997531 1 236766 99999999998 76 999999975 4431 23367999
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEeecceecCCCCCCChHHHHHH-H-HHcCCceEEEeeCCCCcceEecccH-HHHHHHH
Q 012176 273 TKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTK-D-ILQGKTIDVYKTQDDREVARDFTYI-DDVVKGC 349 (469)
Q Consensus 273 sK~~~E~~~~~~~~~~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~-~-~~~g~~~~~~~~~~~~~~~~~~v~v-~Dva~~~ 349 (469)
+|.++|+++++ .|+++++|||+ +||++...... .++. . ...|... + ..++++++.++++|+ +|+|+++
T Consensus 130 sK~~~E~~~~~----~gi~~~ivrpg-~~g~~~~~~~~--~~~~~~~~~~g~~~-~-~~~~~~~~~~~~i~v~~Dva~ai 200 (352)
T 1xgk_A 130 PKFTVENYVRQ----LGLPSTFVYAG-IYNNNFTSLPY--PLFQMELMPDGTFE-W-HAPFDPDIPLPWLDAEHDVGPAL 200 (352)
T ss_dssp HHHHHHHHHHT----SSSCEEEEEEC-EEGGGCBSSSC--SSCBEEECTTSCEE-E-EESSCTTSCEEEECHHHHHHHHH
T ss_pred HHHHHHHHHHH----cCCCEEEEecc-eecCCchhccc--ccccccccCCCceE-E-eeccCCCCceeeEecHHHHHHHH
Confidence 99999999887 38999999987 68886532110 0111 0 1223322 1 112567889999999 8999999
Q ss_pred HHHhccCCCCCCCCCceEEEeCCCCcccHHHHHHHHHHHhCCCccceeecC
Q 012176 350 VGATGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRM 400 (469)
Q Consensus 350 ~~~~~~~~~~~~~~~~~iyni~~~~~vt~~el~~~i~~~~g~~~~~~~~~~ 400 (469)
+.++.++.. ...+++||+++ +.+|+.|+++.+.+.+|++.....+|.
T Consensus 201 ~~~l~~~~~---~~~g~~~~l~~-~~~s~~e~~~~i~~~~G~~~~~~~vp~ 247 (352)
T 1xgk_A 201 LQIFKDGPQ---KWNGHRIALTF-ETLSPVQVCAAFSRALNRRVTYVQVPK 247 (352)
T ss_dssp HHHHHHCHH---HHTTCEEEECS-EEECHHHHHHHHHHHHTSCEEEEECSS
T ss_pred HHHHhCCch---hhCCeEEEEec-CCCCHHHHHHHHHHHHCCCCceEECCH
Confidence 999976410 11359999996 679999999999999999876665553
|
| >2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=4.3e-27 Score=232.11 Aligned_cols=230 Identities=20% Similarity=0.193 Sum_probs=175.2
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCccEEE
Q 012176 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTHVL 198 (469)
Q Consensus 119 ~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~d~Vi 198 (469)
++|+||||||+||++++++|+++|++|++++|+.......+ ..+...+++++.+|++|++++.++++++ |+||
T Consensus 12 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~-----~~l~~~~v~~v~~Dl~d~~~l~~a~~~~--d~vi 84 (318)
T 2r6j_A 12 SKILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPNSSKTTLL-----DEFQSLGAIIVKGELDEHEKLVELMKKV--DVVI 84 (318)
T ss_dssp CCEEEETTTSTTHHHHHHHHHHTTCCEEEEECTTCSCHHHH-----HHHHHTTCEEEECCTTCHHHHHHHHTTC--SEEE
T ss_pred CeEEEECCCchHHHHHHHHHHHCCCcEEEEECCCCchhhHH-----HHhhcCCCEEEEecCCCHHHHHHHHcCC--CEEE
Confidence 58999999999999999999999999999999764111111 1122348999999999999999999987 9999
Q ss_pred EcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcC-CCCeEEEEcCccccCCCCCCCCCCCCCCCCC-CChHHHHHHH
Q 012176 199 HLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVN-PQPSIVWASSSSVYGLNTQVPFSESHRTDQP-ASLYAATKKA 276 (469)
Q Consensus 199 h~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~-~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p-~~~Y~~sK~~ 276 (469)
|+++.. ++.++.+++++|++.+ ++ +||+ | +||.. .+|..+. .| ...| .+|..
T Consensus 85 ~~a~~~---------------~~~~~~~l~~aa~~~g~v~-~~v~-S---~~g~~----~~~~~~~-~p~~~~y-~sK~~ 138 (318)
T 2r6j_A 85 SALAFP---------------QILDQFKILEAIKVAGNIK-RFLP-S---DFGVE----EDRINAL-PPFEALI-ERKRM 138 (318)
T ss_dssp ECCCGG---------------GSTTHHHHHHHHHHHCCCC-EEEC-S---CCSSC----TTTCCCC-HHHHHHH-HHHHH
T ss_pred ECCchh---------------hhHHHHHHHHHHHhcCCCC-EEEe-e---ccccC----cccccCC-CCcchhH-HHHHH
Confidence 999862 1456789999999998 76 8884 3 45532 1222222 22 3468 99999
Q ss_pred HHHHHHHHHHHhCCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceEecccHHHHHHHHHHHhccC
Q 012176 277 GEEIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGATGSG 356 (469)
Q Consensus 277 ~E~~~~~~~~~~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~~~~~~~~~~ 356 (469)
+|.++++ .|+++++|||+.+++. +...++.....++.+.++ ++++..++++|++|++++++.++.++
T Consensus 139 ~e~~~~~----~~~~~~~lr~~~~~~~------~~~~~~~~~~~~~~~~~~---~~~~~~~~~i~~~Dva~~~~~~l~~~ 205 (318)
T 2r6j_A 139 IRRAIEE----ANIPYTYVSANCFASY------FINYLLRPYDPKDEITVY---GTGEAKFAMNYEQDIGLYTIKVATDP 205 (318)
T ss_dssp HHHHHHH----TTCCBEEEECCEEHHH------HHHHHHCTTCCCSEEEEE---TTSCCEEEEECHHHHHHHHHHHTTCG
T ss_pred HHHHHHh----cCCCeEEEEcceehhh------hhhhhccccCCCCceEEe---cCCCceeeEeeHHHHHHHHHHHhcCc
Confidence 9988865 5899999999987763 223333333345566666 66888999999999999999999865
Q ss_pred CCCCCCCCceEEEeCC-CCcccHHHHHHHHHHHhCCCccceeec
Q 012176 357 GKKRGPAQLRVYNLGN-TSPVPVGRLVSILENLLNTKAKKHVIR 399 (469)
Q Consensus 357 ~~~~~~~~~~iyni~~-~~~vt~~el~~~i~~~~g~~~~~~~~~ 399 (469)
. ..+++|++.+ ++.+|+.|+++.+++.+|++..+..++
T Consensus 206 ~-----~~~~~~~~~g~~~~~s~~e~~~~~~~~~g~~~~~~~~~ 244 (318)
T 2r6j_A 206 R-----ALNRVVIYRPSTNIITQLELISRWEKKIGKKFKKIHVP 244 (318)
T ss_dssp G-----GTTEEEECCCGGGEEEHHHHHHHHHHHHTCCCEEEEEC
T ss_pred c-----ccCeEEEecCCCCccCHHHHHHHHHHHhCCCCceeecC
Confidence 2 2347888765 578999999999999999987766655
|
| >3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri} | Back alignment and structure |
|---|
Probab=99.95 E-value=5.6e-27 Score=231.50 Aligned_cols=236 Identities=14% Similarity=0.148 Sum_probs=177.2
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCC-CCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCcc
Q 012176 117 NGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFN-SYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFT 195 (469)
Q Consensus 117 ~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~-~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~d 195 (469)
++|+|+||||||+||++|+++|+++|++|++++|.. ........... ..+...+++++.+|++|++++.++++++ |
T Consensus 3 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~l-~~~~~~~v~~v~~D~~d~~~l~~a~~~~--d 79 (321)
T 3c1o_A 3 HMEKIIIYGGTGYIGKFMVRASLSFSHPTFIYARPLTPDSTPSSVQLR-EEFRSMGVTIIEGEMEEHEKMVSVLKQV--D 79 (321)
T ss_dssp -CCCEEEETTTSTTHHHHHHHHHHTTCCEEEEECCCCTTCCHHHHHHH-HHHHHTTCEEEECCTTCHHHHHHHHTTC--S
T ss_pred cccEEEEEcCCchhHHHHHHHHHhCCCcEEEEECCcccccChHHHHHH-HHhhcCCcEEEEecCCCHHHHHHHHcCC--C
Confidence 357899999999999999999999999999999975 32222111111 1123458999999999999999999987 9
Q ss_pred EEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcC-CCCeEEEEcCccccCCCCCCCCCCCCCCCCC-CChHHHH
Q 012176 196 HVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVN-PQPSIVWASSSSVYGLNTQVPFSESHRTDQP-ASLYAAT 273 (469)
Q Consensus 196 ~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~-~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p-~~~Y~~s 273 (469)
+|||+++... +.++.+++++|++.| ++ +||+ | +||... +|..+. .| .+.| .+
T Consensus 80 ~vi~~a~~~~---------------~~~~~~l~~aa~~~g~v~-~~v~-S---~~g~~~----~~~~~~-~p~~~~y-~s 133 (321)
T 3c1o_A 80 IVISALPFPM---------------ISSQIHIINAIKAAGNIK-RFLP-S---DFGCEE----DRIKPL-PPFESVL-EK 133 (321)
T ss_dssp EEEECCCGGG---------------SGGGHHHHHHHHHHCCCC-EEEC-S---CCSSCG----GGCCCC-HHHHHHH-HH
T ss_pred EEEECCCccc---------------hhhHHHHHHHHHHhCCcc-EEec-c---ccccCc----cccccC-CCcchHH-HH
Confidence 9999998631 456789999999998 76 8883 3 455321 222222 22 4579 99
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEeecceecCCCCCCChHHHHHH---HHHcCCceEEEeeCCCCcceEecccHHHHHHHHH
Q 012176 274 KKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTK---DILQGKTIDVYKTQDDREVARDFTYIDDVVKGCV 350 (469)
Q Consensus 274 K~~~E~~~~~~~~~~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~---~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~~~~ 350 (469)
|..+|.++++ .++++++|||+.++++ ....+.. ....++.+.++ ++++..++++|++|+|++++
T Consensus 134 K~~~e~~~~~----~~~~~~~lrp~~~~~~------~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~i~~~Dva~~~~ 200 (321)
T 3c1o_A 134 KRIIRRAIEA----AALPYTYVSANCFGAY------FVNYLLHPSPHPNRNDDIVIY---GTGETKFVLNYEEDIAKYTI 200 (321)
T ss_dssp HHHHHHHHHH----HTCCBEEEECCEEHHH------HHHHHHCCCSSCCTTSCEEEE---TTSCCEEEEECHHHHHHHHH
T ss_pred HHHHHHHHHH----cCCCeEEEEeceeccc------cccccccccccccccCceEEe---cCCCcceeEeeHHHHHHHHH
Confidence 9999998864 5899999999998874 1222221 11244556666 66888999999999999999
Q ss_pred HHhccCCCCCCCCCceEEEeCC-CCcccHHHHHHHHHHHhCCCccceeec
Q 012176 351 GATGSGGKKRGPAQLRVYNLGN-TSPVPVGRLVSILENLLNTKAKKHVIR 399 (469)
Q Consensus 351 ~~~~~~~~~~~~~~~~iyni~~-~~~vt~~el~~~i~~~~g~~~~~~~~~ 399 (469)
.++.++. ..+++|++.+ ++.+|+.|+++.+.+.+|++..+..++
T Consensus 201 ~~l~~~~-----~~g~~~~~~g~~~~~t~~e~~~~~~~~~g~~~~~~~~~ 245 (321)
T 3c1o_A 201 KVACDPR-----CCNRIVIYRPPKNIISQNELISLWEAKSGLSFKKVHMP 245 (321)
T ss_dssp HHHHCGG-----GTTEEEECCCGGGEEEHHHHHHHHHHHHTSCCCEEEEC
T ss_pred HHHhCcc-----ccCeEEEEeCCCCcccHHHHHHHHHHHcCCcceeeeCC
Confidence 9998752 2358888876 578999999999999999987766655
|
| >2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa} | Back alignment and structure |
|---|
Probab=99.95 E-value=7.2e-27 Score=229.01 Aligned_cols=235 Identities=18% Similarity=0.237 Sum_probs=175.2
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCC-CCCCh-hHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCcc
Q 012176 118 GMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFN-SYYDP-SLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFT 195 (469)
Q Consensus 118 ~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~-~~~~~-~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~d 195 (469)
+|+|+||||||+||++|+++|+++|++|++++|.. ....+ ...... ..+...+++++.+|++|++++.++++++ |
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~-~~l~~~~v~~v~~D~~d~~~l~~~~~~~--d 78 (307)
T 2gas_A 2 ENKILILGPTGAIGRHIVWASIKAGNPTYALVRKTITAANPETKEELI-DNYQSLGVILLEGDINDHETLVKAIKQV--D 78 (307)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHHTCCEEEEECCSCCSSCHHHHHHHH-HHHHHTTCEEEECCTTCHHHHHHHHTTC--S
T ss_pred CcEEEEECCCchHHHHHHHHHHhCCCcEEEEECCCcccCChHHHHHHH-HHHHhCCCEEEEeCCCCHHHHHHHHhCC--C
Confidence 57899999999999999999999999999999975 21111 111111 1122358999999999999999999987 9
Q ss_pred EEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcC-CCCeEEEEcCccccCCCCCCCCCCCCCCCCC-CChHHHH
Q 012176 196 HVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVN-PQPSIVWASSSSVYGLNTQVPFSESHRTDQP-ASLYAAT 273 (469)
Q Consensus 196 ~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~-~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p-~~~Y~~s 273 (469)
+|||+++... +.++.+++++|++.| ++ +||+ | +||... +|..+. .| ...| .+
T Consensus 79 ~vi~~a~~~~---------------~~~~~~l~~aa~~~g~v~-~~v~-S---~~g~~~----~~~~~~-~p~~~~y-~s 132 (307)
T 2gas_A 79 IVICAAGRLL---------------IEDQVKIIKAIKEAGNVK-KFFP-S---EFGLDV----DRHDAV-EPVRQVF-EE 132 (307)
T ss_dssp EEEECSSSSC---------------GGGHHHHHHHHHHHCCCS-EEEC-S---CCSSCT----TSCCCC-TTHHHHH-HH
T ss_pred EEEECCcccc---------------cccHHHHHHHHHhcCCce-EEee-c---ccccCc----ccccCC-CcchhHH-HH
Confidence 9999998632 446789999999998 76 8883 3 455321 222222 23 4578 99
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEeecceecCCCCCCChHHHHHH---HHHcCCceEEEeeCCCCcceEecccHHHHHHHHH
Q 012176 274 KKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTK---DILQGKTIDVYKTQDDREVARDFTYIDDVVKGCV 350 (469)
Q Consensus 274 K~~~E~~~~~~~~~~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~---~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~~~~ 350 (469)
|..+|.++++ .|+++++|||+.++++... .+.. ....++.+.++ ++++..++++|++|+|++++
T Consensus 133 K~~~e~~~~~----~~i~~~~lrp~~~~~~~~~------~~~~~~~~~~~~~~~~~~---~~~~~~~~~i~~~Dva~~~~ 199 (307)
T 2gas_A 133 KASIRRVIEA----EGVPYTYLCCHAFTGYFLR------NLAQLDATDPPRDKVVIL---GDGNVKGAYVTEADVGTFTI 199 (307)
T ss_dssp HHHHHHHHHH----HTCCBEEEECCEETTTTGG------GTTCTTCSSCCSSEEEEE---TTSCSEEEEECHHHHHHHHH
T ss_pred HHHHHHHHHH----cCCCeEEEEcceeeccccc------cccccccccCCCCeEEEe---cCCCcceEEeeHHHHHHHHH
Confidence 9999988865 5899999999998885321 1111 01234455555 66788999999999999999
Q ss_pred HHhccCCCCCCCCCceEEEeCC-CCcccHHHHHHHHHHHhCCCccceeec
Q 012176 351 GATGSGGKKRGPAQLRVYNLGN-TSPVPVGRLVSILENLLNTKAKKHVIR 399 (469)
Q Consensus 351 ~~~~~~~~~~~~~~~~iyni~~-~~~vt~~el~~~i~~~~g~~~~~~~~~ 399 (469)
.++.++. ..+++|++.+ ++.+|+.|+++.+++.+|++.+...++
T Consensus 200 ~~l~~~~-----~~~~~~~~~~~~~~~s~~e~~~~~~~~~g~~~~~~~~~ 244 (307)
T 2gas_A 200 RAANDPN-----TLNKAVHIRLPKNYLTQNEVIALWEKKIGKTLEKTYVS 244 (307)
T ss_dssp HHHTCGG-----GTTEEEECCCGGGEEEHHHHHHHHHHHHTSCCEEEEEC
T ss_pred HHHcCcc-----ccCceEEEeCCCCcCCHHHHHHHHHHHhCCCCceeecC
Confidence 9997652 2347888776 478999999999999999987666554
|
| >2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.1e-26 Score=224.53 Aligned_cols=245 Identities=14% Similarity=0.134 Sum_probs=182.2
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccC---
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~--- 192 (469)
.++|+|+||||+|+||++++++|+++|++|++++|... .............++.++.+|++|+++++++++.+
T Consensus 14 l~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~----~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 89 (278)
T 2bgk_A 14 LQDKVAIITGGAGGIGETTAKLFVRYGAKVVIADIADD----HGQKVCNNIGSPDVISFVHCDVTKDEDVRNLVDTTIAK 89 (278)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHH----HHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred ccCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCChh----HHHHHHHHhCCCCceEEEECCCCCHHHHHHHHHHHHHH
Confidence 57789999999999999999999999999999998432 11111122212237999999999999999988743
Q ss_pred --CccEEEEcccccCh------hhhccChHHHHHHHHHHHHHHHHHHHhc----CCCCeEEEEcCccccCCCCCCCCCCC
Q 012176 193 --PFTHVLHLAAQAGV------RYAMQNPQSYVASNIAGFVNLLEVCKSV----NPQPSIVWASSSSVYGLNTQVPFSES 260 (469)
Q Consensus 193 --~~d~Vih~Aa~~~~------~~~~~~~~~~~~~Nv~~~~~ll~aa~~~----~~~~~~V~~SS~~vyg~~~~~~~~E~ 260 (469)
++|+||||||.... ....++++..+++|+.++.++++++... +. ++||++||..+|....
T Consensus 90 ~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~-~~iv~isS~~~~~~~~------- 161 (278)
T 2bgk_A 90 HGKLDIMFGNVGVLSTTPYSILEAGNEDFKRVMDINVYGAFLVAKHAARVMIPAKK-GSIVFTASISSFTAGE------- 161 (278)
T ss_dssp HSCCCEEEECCCCCCSSCSSTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHGGGTC-EEEEEECCGGGTCCCT-------
T ss_pred cCCCCEEEECCcccCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCC-CeEEEEeeccccCCCC-------
Confidence 57999999997432 1223455678999999999999987653 44 3999999998886431
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeecceecCCCCCCCh-HHHHHHHHHcCCceEEEeeCCCCcce
Q 012176 261 HRTDQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPDMA-YFFFTKDILQGKTIDVYKTQDDREVA 336 (469)
Q Consensus 261 ~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~Gp~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~ 336 (469)
.+...|+.+|.+.|.+++.++.+ +|+++++||||.|+|+....... ...+...+....+ ...
T Consensus 162 ----~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~----------~~~ 227 (278)
T 2bgk_A 162 ----GVSHVYTATKHAVLGLTTSLCTELGEYGIRVNCVSPYIVASPLLTDVFGVDSSRVEELAHQAA----------NLK 227 (278)
T ss_dssp ----TSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCCSCCCCTTSSSCCHHHHHHHHHHTC----------SSC
T ss_pred ----CCCcchHHHHHHHHHHHHHHHHHHhhcCcEEEEEEeceecchhhhhhcccchhHHHHhhhccc----------ccc
Confidence 14568999999999999999876 58999999999999986543210 1222222222211 112
Q ss_pred EecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCCcccHHHHHHHHHHHh
Q 012176 337 RDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLL 389 (469)
Q Consensus 337 ~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~~vt~~el~~~i~~~~ 389 (469)
..+++++|+|++++.++..... ...|++|++.++..+++.|+++.+.+.+
T Consensus 228 ~~~~~~~dva~~~~~l~~~~~~---~~~G~~~~v~gg~~~~~~e~~~~i~~~~ 277 (278)
T 2bgk_A 228 GTLLRAEDVADAVAYLAGDESK---YVSGLNLVIDGGYTRTNPAFPTALKHGL 277 (278)
T ss_dssp SCCCCHHHHHHHHHHHHSGGGT---TCCSCEEEESTTGGGCCTHHHHHSCSCC
T ss_pred cccCCHHHHHHHHHHHcCcccc---cCCCCEEEECCcccccCCccchhhhhhc
Confidence 3588999999999999865421 2456999999999999999999886543
|
| >1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.95 E-value=2.6e-27 Score=232.28 Aligned_cols=238 Identities=17% Similarity=0.196 Sum_probs=176.7
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCC-ChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCccE
Q 012176 118 GMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYY-DPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTH 196 (469)
Q Consensus 118 ~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~-~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~d~ 196 (469)
+|+|+||||||+||++|+++|+++|++|++++|..... ++..... ...+...+++++.+|++|++++.++++++ |+
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~~~-~~~l~~~~v~~v~~D~~d~~~l~~~~~~~--d~ 80 (308)
T 1qyc_A 4 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQL-LESFKASGANIVHGSIDDHASLVEAVKNV--DV 80 (308)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCTTTTHHHHHH-HHHHHTTTCEEECCCTTCHHHHHHHHHTC--SE
T ss_pred CCEEEEEcCCcHHHHHHHHHHHhCCCCEEEEECCcccccCHHHHHH-HHHHHhCCCEEEEeccCCHHHHHHHHcCC--CE
Confidence 57899999999999999999999999999999976432 1111111 11223458999999999999999999987 99
Q ss_pred EEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcC-CCCeEEEEcCccccCCCCCCCCCCCCCCCCC-CChHHHHH
Q 012176 197 VLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVN-PQPSIVWASSSSVYGLNTQVPFSESHRTDQP-ASLYAATK 274 (469)
Q Consensus 197 Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~-~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p-~~~Y~~sK 274 (469)
|||+++... +.++.+++++|+++| ++ +||+ | +||.. .+|..+. .| ...| .+|
T Consensus 81 vi~~a~~~~---------------~~~~~~l~~aa~~~g~v~-~~v~-S---~~g~~----~~~~~~~-~p~~~~y-~sK 134 (308)
T 1qyc_A 81 VISTVGSLQ---------------IESQVNIIKAIKEVGTVK-RFFP-S---EFGND----VDNVHAV-EPAKSVF-EVK 134 (308)
T ss_dssp EEECCCGGG---------------SGGGHHHHHHHHHHCCCS-EEEC-S---CCSSC----TTSCCCC-TTHHHHH-HHH
T ss_pred EEECCcchh---------------hhhHHHHHHHHHhcCCCc-eEee-c---ccccC----ccccccC-CcchhHH-HHH
Confidence 999998631 446789999999998 76 8884 4 35432 1222222 23 3568 999
Q ss_pred HHHHHHHHHHHHHhCCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceEecccHHHHHHHHHHHhc
Q 012176 275 KAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGATG 354 (469)
Q Consensus 275 ~~~E~~~~~~~~~~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~~~~~~~~ 354 (469)
..+|.++++ .+++++++||+.++|+...... ........++.+.++ ++++..++++|++|+|++++.++.
T Consensus 135 ~~~e~~~~~----~~~~~~~~r~~~~~~~~~~~~~---~~~~~~~~~~~~~~~---~~~~~~~~~i~~~Dva~~~~~~l~ 204 (308)
T 1qyc_A 135 AKVRRAIEA----EGIPYTYVSSNCFAGYFLRSLA---QAGLTAPPRDKVVIL---GDGNARVVFVKEEDIGTFTIKAVD 204 (308)
T ss_dssp HHHHHHHHH----HTCCBEEEECCEEHHHHTTTTT---CTTCSSCCSSEEEEE---TTSCCEEEEECHHHHHHHHHTTSS
T ss_pred HHHHHHHHh----cCCCeEEEEeceeccccccccc---cccccCCCCCceEEe---cCCCceEEEecHHHHHHHHHHHHh
Confidence 999998875 5899999999999885322100 000011234455666 678899999999999999999987
Q ss_pred cCCCCCCCCCceEEEeCC-CCcccHHHHHHHHHHHhCCCccceeec
Q 012176 355 SGGKKRGPAQLRVYNLGN-TSPVPVGRLVSILENLLNTKAKKHVIR 399 (469)
Q Consensus 355 ~~~~~~~~~~~~iyni~~-~~~vt~~el~~~i~~~~g~~~~~~~~~ 399 (469)
++. ..+++|++.+ ++.+|+.|+++.+.+.+|++.++..+|
T Consensus 205 ~~~-----~~~~~~~~~g~~~~~s~~e~~~~~~~~~g~~~~~~~~~ 245 (308)
T 1qyc_A 205 DPR-----TLNKTLYLRLPANTLSLNELVALWEKKIDKTLEKAYVP 245 (308)
T ss_dssp CGG-----GTTEEEECCCGGGEEEHHHHHHHHHHHTTSCCEEEEEC
T ss_pred Ccc-----ccCeEEEEeCCCCccCHHHHHHHHHHHhCCCCceEeCC
Confidence 652 2358888876 478999999999999999987666554
|
| >1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=6.6e-26 Score=208.66 Aligned_cols=203 Identities=14% Similarity=0.038 Sum_probs=156.6
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCccEE
Q 012176 118 GMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTHV 197 (469)
Q Consensus 118 ~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~d~V 197 (469)
+|+|+||||+|+||++++++|+++|++|++++|+...... ....+++++.+|++|++.+.++++++ |+|
T Consensus 3 ~~~ilVtGatG~iG~~l~~~l~~~g~~V~~~~r~~~~~~~---------~~~~~~~~~~~D~~~~~~~~~~~~~~--d~v 71 (206)
T 1hdo_A 3 VKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPS---------EGPRPAHVVVGDVLQAADVDKTVAGQ--DAV 71 (206)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGSCS---------SSCCCSEEEESCTTSHHHHHHHHTTC--SEE
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHCCCeEEEEEeChhhccc---------ccCCceEEEEecCCCHHHHHHHHcCC--CEE
Confidence 3899999999999999999999999999999996542211 11358999999999999999999987 999
Q ss_pred EEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcCccccCCCCCCCCCCCCCCCCCCChHHHHHHHH
Q 012176 198 LHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAG 277 (469)
Q Consensus 198 ih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y~~sK~~~ 277 (469)
||+||.... .++ .++|+.++.+++++|++.+++ +||++||.++|+.....+ .+...|+.+|.++
T Consensus 72 i~~a~~~~~----~~~---~~~n~~~~~~~~~~~~~~~~~-~~v~~Ss~~~~~~~~~~~--------~~~~~y~~~K~~~ 135 (206)
T 1hdo_A 72 IVLLGTRND----LSP---TTVMSEGARNIVAAMKAHGVD-KVVACTSAFLLWDPTKVP--------PRLQAVTDDHIRM 135 (206)
T ss_dssp EECCCCTTC----CSC---CCHHHHHHHHHHHHHHHHTCC-EEEEECCGGGTSCTTCSC--------GGGHHHHHHHHHH
T ss_pred EECccCCCC----CCc---cchHHHHHHHHHHHHHHhCCC-eEEEEeeeeeccCccccc--------ccchhHHHHHHHH
Confidence 999997432 112 247999999999999999886 999999999997543211 1457899999999
Q ss_pred HHHHHHHHHHhCCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceEecccHHHHHHHHHHHhccCC
Q 012176 278 EEIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGATGSGG 357 (469)
Q Consensus 278 E~~~~~~~~~~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~~~~~~~~~~~ 357 (469)
|.++++ .+++++++||+.+ +++..... ...... +... .+++|++|+|++++.+++++
T Consensus 136 e~~~~~----~~i~~~~lrp~~~-~~~~~~~~-------------~~~~~~--~~~~--~~~i~~~Dva~~~~~~~~~~- 192 (206)
T 1hdo_A 136 HKVLRE----SGLKYVAVMPPHI-GDQPLTGA-------------YTVTLD--GRGP--SRVISKHDLGHFMLRCLTTD- 192 (206)
T ss_dssp HHHHHH----TCSEEEEECCSEE-ECCCCCSC-------------CEEESS--SCSS--CSEEEHHHHHHHHHHTTSCS-
T ss_pred HHHHHh----CCCCEEEEeCCcc-cCCCCCcc-------------eEeccc--CCCC--CCccCHHHHHHHHHHHhcCc-
Confidence 998854 6999999999997 43222111 011110 1111 48999999999999999876
Q ss_pred CCCCCCCceEEEeCCCC
Q 012176 358 KKRGPAQLRVYNLGNTS 374 (469)
Q Consensus 358 ~~~~~~~~~iyni~~~~ 374 (469)
...+++||++++.
T Consensus 193 ----~~~g~~~~i~~g~ 205 (206)
T 1hdo_A 193 ----EYDGHSTYPSHQY 205 (206)
T ss_dssp ----TTTTCEEEEECCC
T ss_pred ----cccccceeeeccc
Confidence 2456999999874
|
| >2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A | Back alignment and structure |
|---|
Probab=99.94 E-value=2.9e-26 Score=216.98 Aligned_cols=199 Identities=12% Similarity=0.028 Sum_probs=156.6
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCC--cEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCC
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGD--GVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVP 193 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~ 193 (469)
+++|+|+||||+|+||++++++|+++|+ +|++++|+....... ...++.++.+|++|+++++++++++
T Consensus 16 m~~~~vlVtGasg~iG~~l~~~L~~~G~~~~V~~~~r~~~~~~~~---------~~~~~~~~~~D~~d~~~~~~~~~~~- 85 (242)
T 2bka_A 16 MQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEE---------AYKNVNQEVVDFEKLDDYASAFQGH- 85 (242)
T ss_dssp HTCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSG---------GGGGCEEEECCGGGGGGGGGGGSSC-
T ss_pred hcCCeEEEECCCcHHHHHHHHHHHcCCCCCEEEEEEcCCCCcccc---------ccCCceEEecCcCCHHHHHHHhcCC-
Confidence 3568999999999999999999999999 999999976543321 1126889999999999999999876
Q ss_pred ccEEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcCccccCCCCCCCCCCCCCCCCCCChHHHH
Q 012176 194 FTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAAT 273 (469)
Q Consensus 194 ~d~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y~~s 273 (469)
|+||||||..... .+++..+++|+.++.+++++|++.+.+ +||++||.++|+. +...|+.+
T Consensus 86 -d~vi~~ag~~~~~---~~~~~~~~~n~~~~~~~~~~~~~~~~~-~iv~~SS~~~~~~--------------~~~~Y~~s 146 (242)
T 2bka_A 86 -DVGFCCLGTTRGK---AGAEGFVRVDRDYVLKSAELAKAGGCK-HFNLLSSKGADKS--------------SNFLYLQV 146 (242)
T ss_dssp -SEEEECCCCCHHH---HHHHHHHHHHTHHHHHHHHHHHHTTCC-EEEEECCTTCCTT--------------CSSHHHHH
T ss_pred -CEEEECCCccccc---CCcccceeeeHHHHHHHHHHHHHCCCC-EEEEEccCcCCCC--------------CcchHHHH
Confidence 9999999974322 235678999999999999999998876 9999999998852 34689999
Q ss_pred HHHHHHHHHHHHHHhCC-cEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceEecccHHHHHHHHHHH
Q 012176 274 KKAGEEIAHTYNHIYGL-ALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGA 352 (469)
Q Consensus 274 K~~~E~~~~~~~~~~gi-~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~~~~~~ 352 (469)
|.++|.+++. .++ ++++||||.||||..... ....+........+.. .....+++++|+|++++.+
T Consensus 147 K~~~e~~~~~----~~~~~~~~vrpg~v~~~~~~~~-~~~~~~~~~~~~~~~~--------~~~~~~~~~~dva~~~~~~ 213 (242)
T 2bka_A 147 KGEVEAKVEE----LKFDRYSVFRPGVLLCDRQESR-PGEWLVRKFFGSLPDS--------WASGHSVPVVTVVRAMLNN 213 (242)
T ss_dssp HHHHHHHHHT----TCCSEEEEEECCEEECTTGGGS-HHHHHHHHHHCSCCTT--------GGGGTEEEHHHHHHHHHHH
T ss_pred HHHHHHHHHh----cCCCCeEEEcCceecCCCCCCc-HHHHHHHHhhcccCcc--------ccCCcccCHHHHHHHHHHH
Confidence 9999998876 477 599999999999965432 2233444443332211 1123589999999999999
Q ss_pred hccC
Q 012176 353 TGSG 356 (469)
Q Consensus 353 ~~~~ 356 (469)
+.++
T Consensus 214 ~~~~ 217 (242)
T 2bka_A 214 VVRP 217 (242)
T ss_dssp HTSC
T ss_pred HhCc
Confidence 9876
|
| >3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.4e-26 Score=224.52 Aligned_cols=245 Identities=15% Similarity=0.042 Sum_probs=176.3
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccC---
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~--- 192 (469)
.++|+||||||+|+||++++++|+++|++|++++|+.+. ....... ...++.++.+|++|.++++++++..
T Consensus 3 ~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~----~~~~~~~--~~~~~~~~~~Dv~~~~~~~~~~~~~~~~ 76 (281)
T 3m1a_A 3 ESAKVWLVTGASSGFGRAIAEAAVAAGDTVIGTARRTEA----LDDLVAA--YPDRAEAISLDVTDGERIDVVAADVLAR 76 (281)
T ss_dssp -CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSGGG----GHHHHHH--CTTTEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHH----HHHHHHh--ccCCceEEEeeCCCHHHHHHHHHHHHHh
Confidence 457899999999999999999999999999999996542 2222221 1347999999999999999988754
Q ss_pred --CccEEEEcccccCh----hhhccChHHHHHHHHHHHHHH----HHHHHhcCCCCeEEEEcCccccCCCCCCCCCCCCC
Q 012176 193 --PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNL----LEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHR 262 (469)
Q Consensus 193 --~~d~Vih~Aa~~~~----~~~~~~~~~~~~~Nv~~~~~l----l~aa~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~ 262 (469)
++|+||||||.... ....++++..+++|+.++..+ +..+++.+.. +||++||...+.+.
T Consensus 77 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~-~iv~~sS~~~~~~~---------- 145 (281)
T 3m1a_A 77 YGRVDVLVNNAGRTQVGAFEETTERELRDLFELHVFGPARLTRALLPQMRERGSG-SVVNISSFGGQLSF---------- 145 (281)
T ss_dssp HSCCSEEEECCCCEEECCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE-EEEEECCGGGTCCC----------
T ss_pred CCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-EEEEEcCccccCCC----------
Confidence 67999999997432 233455667899999995554 4445666654 99999998776432
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeecceecCCCCCCC-----hHHHHHHHHHcCCceEEEeeCCCCc
Q 012176 263 TDQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPDM-----AYFFFTKDILQGKTIDVYKTQDDRE 334 (469)
Q Consensus 263 ~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~Gp~~~~~~-----~~~~~~~~~~~g~~~~~~~~~~~~~ 334 (469)
.+.+.|+.+|.+.|.+++.++.+ +|+++++||||.|+++...... ....+.........+.. ..
T Consensus 146 --~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~ 217 (281)
T 3m1a_A 146 --AGFSAYSATKAALEQLSEGLADEVAPFGIKVLIVEPGAFRTNLFGKGAAYFSEENPAYAEKVGPTRQLVQ------GS 217 (281)
T ss_dssp --TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCTTTCCCCEEECCBCTTTHHHHHHHHHHHH------C-
T ss_pred --CCchHHHHHHHHHHHHHHHHHHHhhccCcEEEEEecCccccccccccccccCCcchhhHHHhHHHHHHHh------hc
Confidence 45678999999999999999987 6999999999999887533210 01111111111111100 12
Q ss_pred ceEecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCCcccHHHHHHHHHHHhCC
Q 012176 335 VARDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNT 391 (469)
Q Consensus 335 ~~~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~~vt~~el~~~i~~~~g~ 391 (469)
....+.+++|+|++++.+++++. .+..|+++++......+....+.+.++.
T Consensus 218 ~~~~~~~~~dva~a~~~~~~~~~------~~~~~~l~s~~~~~i~g~~~~i~~~~~~ 268 (281)
T 3m1a_A 218 DGSQPGDPAKAAAAIRLALDTEK------TPLRLALGGDAVDFLTGHLDSVRAELTE 268 (281)
T ss_dssp ----CBCHHHHHHHHHHHHHSSS------CCSEEEESHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHhCCC------CCeEEecCchHHHHHHHHHHHHHHHHHH
Confidence 23457889999999999998762 2378999998877778888777776653
|
| >1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.94 E-value=4.8e-26 Score=215.85 Aligned_cols=226 Identities=18% Similarity=0.117 Sum_probs=168.6
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccC-Cc
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV-PF 194 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~-~~ 194 (469)
.++|+|+||||+|+||++++++|+++|++|++++|+.. ....... +..+++++.+|++|.++++++++.. ++
T Consensus 5 ~~~~~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~~----~~~~~~~---~~~~~~~~~~D~~~~~~~~~~~~~~~~i 77 (244)
T 1cyd_A 5 FSGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNS----DLVSLAK---ECPGIEPVCVDLGDWDATEKALGGIGPV 77 (244)
T ss_dssp CTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHH----HHHHHHH---HSTTCEEEECCTTCHHHHHHHHTTCCCC
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHH----HHHHHHH---hccCCCcEEecCCCHHHHHHHHHHcCCC
Confidence 56789999999999999999999999999999998532 1111111 1236788899999999999999854 57
Q ss_pred cEEEEcccccChh----hhccChHHHHHHHHHHHHHHHHHHHhc----CCCCeEEEEcCccccCCCCCCCCCCCCCCCCC
Q 012176 195 THVLHLAAQAGVR----YAMQNPQSYVASNIAGFVNLLEVCKSV----NPQPSIVWASSSSVYGLNTQVPFSESHRTDQP 266 (469)
Q Consensus 195 d~Vih~Aa~~~~~----~~~~~~~~~~~~Nv~~~~~ll~aa~~~----~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p 266 (469)
|+||||||..... ...++++..+++|+.++.++++++... +..++||++||..+|.+. .+
T Consensus 78 d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~~~------------~~ 145 (244)
T 1cyd_A 78 DLLVNNAALVIMQPFLEVTKEAFDRSFSVNLRSVFQVSQMVARDMINRGVPGSIVNVSSMVAHVTF------------PN 145 (244)
T ss_dssp SEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSCC------------TT
T ss_pred CEEEECCcccCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCeEEEEEcchhhcCCC------------CC
Confidence 9999999964321 223455678999999999999887653 422499999998887542 34
Q ss_pred CChHHHHHHHHHHHHHHHHHH---hCCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceEecccHH
Q 012176 267 ASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYID 343 (469)
Q Consensus 267 ~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~ 343 (469)
...|+.+|.+.|.+++.++.+ .|++++++|||.|+++..........++..+..+.+ ..++++++
T Consensus 146 ~~~Y~~sK~a~~~~~~~~a~~~~~~gi~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~ 213 (244)
T 1cyd_A 146 LITYSSTKGAMTMLTKAMAMELGPHKIRVNSVNPTVVLTDMGKKVSADPEFARKLKERHP------------LRKFAEVE 213 (244)
T ss_dssp BHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBTTHHHHHHTCCHHHHHHHHHHST------------TSSCBCHH
T ss_pred cchhHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCcccCccccccccCHHHHHHHHhcCC------------ccCCCCHH
Confidence 568999999999999999877 589999999999999743211011233344433322 25689999
Q ss_pred HHHHHHHHHhccCCCCCCCCCceEEEeCCCCc
Q 012176 344 DVVKGCVGATGSGGKKRGPAQLRVYNLGNTSP 375 (469)
Q Consensus 344 Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~~ 375 (469)
|+|++++.++..+.. ...|+++++.++..
T Consensus 214 dva~~~~~l~~~~~~---~~~G~~~~v~gG~~ 242 (244)
T 1cyd_A 214 DVVNSILFLLSDRSA---STSGGGILVDAGYL 242 (244)
T ss_dssp HHHHHHHHHHSGGGT---TCCSSEEEESTTGG
T ss_pred HHHHHHHHHhCchhh---cccCCEEEECCCcc
Confidence 999999999876422 23468999988753
|
| >3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.7e-26 Score=224.10 Aligned_cols=248 Identities=16% Similarity=0.090 Sum_probs=184.8
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcc----CCeEEEEecCCCHHHHHHhhcc
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQK----HQVFIVEGDLNDAPLLTKLFDV 191 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~----~~v~~v~~Dl~d~~~l~~~~~~ 191 (469)
.++|+||||||+|+||++++++|+++|++|++++|+.+ ............ ..+.++.+|++|+++++++++.
T Consensus 9 l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~----~~~~~~~~l~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~ 84 (281)
T 3svt_A 9 FQDRTYLVTGGGSGIGKGVAAGLVAAGASVMIVGRNPD----KLAGAVQELEALGANGGAIRYEPTDITNEDETARAVDA 84 (281)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH----HHHHHHHHHHTTCCSSCEEEEEECCTTSHHHHHHHHHH
T ss_pred cCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHH----HHHHHHHHHHHhCCCCceEEEEeCCCCCHHHHHHHHHH
Confidence 57899999999999999999999999999999998543 122222222211 2688999999999999998876
Q ss_pred C-----CccEEEEcccccCh-----hhhccChHHHHHHHHHHHHHHHHHHHhc---CCCCeEEEEcCccccCCCCCCCCC
Q 012176 192 V-----PFTHVLHLAAQAGV-----RYAMQNPQSYVASNIAGFVNLLEVCKSV---NPQPSIVWASSSSVYGLNTQVPFS 258 (469)
Q Consensus 192 ~-----~~d~Vih~Aa~~~~-----~~~~~~~~~~~~~Nv~~~~~ll~aa~~~---~~~~~~V~~SS~~vyg~~~~~~~~ 258 (469)
+ ++|+||||||.... ....++++..+++|+.++.++++++... ...++||++||...+.+.
T Consensus 85 ~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~------ 158 (281)
T 3svt_A 85 VTAWHGRLHGVVHCAGGSENIGPITQVDSEAWRRTVDLNVNGTMYVLKHAAREMVRGGGGSFVGISSIAASNTH------ 158 (281)
T ss_dssp HHHHHSCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHSCC------
T ss_pred HHHHcCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEeCHHHcCCC------
Confidence 5 68999999996221 2234455679999999999999987543 112489999998877432
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcc
Q 012176 259 ESHRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREV 335 (469)
Q Consensus 259 E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 335 (469)
.+...|+.+|.+.+.+++.++.++ |+++++|+||.|+++..........+...+....++
T Consensus 159 ------~~~~~Y~asK~a~~~l~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~p~----------- 221 (281)
T 3svt_A 159 ------RWFGAYGVTKSAVDHLMQLAADELGASWVRVNSIRPGLIRTDLVAAITESAELSSDYAMCTPL----------- 221 (281)
T ss_dssp ------TTCTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSGGGHHHHTCHHHHHHHHHHCSS-----------
T ss_pred ------CCChhHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeCcCcCcchhhcccCHHHHHHHHhcCCC-----------
Confidence 345789999999999999998775 599999999999987432100001223333333332
Q ss_pred eEecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCCccc-HHHHHHHHHHHhCCCcc
Q 012176 336 ARDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTSPVP-VGRLVSILENLLNTKAK 394 (469)
Q Consensus 336 ~~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~~vt-~~el~~~i~~~~g~~~~ 394 (469)
..+.+++|+|++++.++..... ...|++|++.++..++ ..++.+.+.+.+|.+..
T Consensus 222 -~r~~~~~dva~~~~~l~s~~~~---~itG~~~~vdgG~~~~~~~~~~~~~~~~~~~~~~ 277 (281)
T 3svt_A 222 -PRQGEVEDVANMAMFLLSDAAS---FVTGQVINVDGGQMLRRGPDFSAMLEPVFGRDAL 277 (281)
T ss_dssp -SSCBCHHHHHHHHHHHHSGGGT---TCCSCEEEESTTGGGSCCCCCHHHHHHHHCTTGG
T ss_pred -CCCCCHHHHHHHHHHHhCcccC---CCCCCEEEeCCChhcccCCcchhccccccCCccc
Confidence 2456799999999998865422 2456999999998777 88999999999997653
|
| >1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=7.6e-26 Score=215.84 Aligned_cols=230 Identities=14% Similarity=0.155 Sum_probs=172.6
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhh-ccCCeEEEEecCCCHHHHHHhhccC--
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLL-QKHQVFIVEGDLNDAPLLTKLFDVV-- 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~v~~v~~Dl~d~~~l~~~~~~~-- 192 (469)
.++|+||||||+|+||++++++|+++|++|++++|+.+ .......... ...++.++.+|++|+++++++++..
T Consensus 9 ~~~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~----~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 84 (255)
T 1fmc_A 9 LDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINAD----AANHVVDEIQQLGGQAFACRCDITSEQELSALADFAIS 84 (255)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESCHH----HHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHH----HHHHHHHHHHHhCCceEEEEcCCCCHHHHHHHHHHHHH
Confidence 56789999999999999999999999999999999542 1111111111 1347889999999999999988733
Q ss_pred ---CccEEEEcccccCh---hhhccChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEEcCccccCCCCCCCCCCCCC
Q 012176 193 ---PFTHVLHLAAQAGV---RYAMQNPQSYVASNIAGFVNLLEVCK----SVNPQPSIVWASSSSVYGLNTQVPFSESHR 262 (469)
Q Consensus 193 ---~~d~Vih~Aa~~~~---~~~~~~~~~~~~~Nv~~~~~ll~aa~----~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~ 262 (469)
++|+||||||.... ....++++..+++|+.++.++++++. +.+.. +||++||..++.+.
T Consensus 85 ~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~-~iv~~sS~~~~~~~---------- 153 (255)
T 1fmc_A 85 KLGKVDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKNGGG-VILTITSMAAENKN---------- 153 (255)
T ss_dssp HHSSCCEEEECCCCCCCCCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE-EEEEECCGGGTCCC----------
T ss_pred hcCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCc-EEEEEcchhhcCCC----------
Confidence 56999999997543 22334557889999999999999875 44544 99999998887532
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceEec
Q 012176 263 TDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDF 339 (469)
Q Consensus 263 ~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 339 (469)
.+...|+.+|.+.|.+++.++.++ |++++++|||.|+++..... ..+.+...+..+.++ ..+
T Consensus 154 --~~~~~Y~~sK~a~~~~~~~~~~~~~~~~i~v~~v~Pg~v~t~~~~~~-~~~~~~~~~~~~~~~------------~~~ 218 (255)
T 1fmc_A 154 --INMTSYASSKAAASHLVRNMAFDLGEKNIRVNGIAPGAILTDALKSV-ITPEIEQKMLQHTPI------------RRL 218 (255)
T ss_dssp --TTCHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBCSHHHHTT-CCHHHHHHHHHTCSS------------CSC
T ss_pred --CCCcccHHHHHHHHHHHHHHHHHhhhcCcEEEEEecccCcchhhhhc-cChHHHHHHHhcCCc------------ccC
Confidence 346789999999999999998775 89999999999999743221 112344444444332 246
Q ss_pred ccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCCcccH
Q 012176 340 TYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTSPVPV 378 (469)
Q Consensus 340 v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~~vt~ 378 (469)
.+++|+|++++.++..... ...|++||++++..+|+
T Consensus 219 ~~~~dva~~~~~l~~~~~~---~~~G~~~~v~gg~~~s~ 254 (255)
T 1fmc_A 219 GQPQDIANAALFLCSPAAS---WVSGQILTVSGGGVQEL 254 (255)
T ss_dssp BCHHHHHHHHHHHHSGGGT---TCCSCEEEESTTSCCCC
T ss_pred CCHHHHHHHHHHHhCCccc---cCCCcEEEECCceeccC
Confidence 7899999999999865421 23468999999987764
|
| >1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=8.5e-26 Score=221.26 Aligned_cols=245 Identities=11% Similarity=0.052 Sum_probs=179.6
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhc--cCCeEEEEecCCCHHHHHHhhccC-
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQ--KHQVFIVEGDLNDAPLLTKLFDVV- 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~--~~~v~~v~~Dl~d~~~l~~~~~~~- 192 (469)
.++|+|+||||+|+||++++++|+++|++|++++|+.. ........... ..++.++.+|++|.++++++++.+
T Consensus 24 l~~k~vlITGasggiG~~la~~L~~~G~~V~~~~r~~~----~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~ 99 (302)
T 1w6u_A 24 FQGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMD----VLKATAEQISSQTGNKVHAIQCDVRDPDMVQNTVSELI 99 (302)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH----HHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHH----HHHHHHHHHHHhcCCceEEEEeCCCCHHHHHHHHHHHH
Confidence 67899999999999999999999999999999999542 11111111111 347999999999999999888765
Q ss_pred ----CccEEEEcccccCh----hhhccChHHHHHHHHHHHHHHHHHHHhc----CCCCeEEEEcCccccCCCCCCCCCCC
Q 012176 193 ----PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCKSV----NPQPSIVWASSSSVYGLNTQVPFSES 260 (469)
Q Consensus 193 ----~~d~Vih~Aa~~~~----~~~~~~~~~~~~~Nv~~~~~ll~aa~~~----~~~~~~V~~SS~~vyg~~~~~~~~E~ 260 (469)
++|+||||||.... ....++++..+++|+.++.++++++... ...++||++||...+.+.
T Consensus 100 ~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~iv~isS~~~~~~~-------- 171 (302)
T 1w6u_A 100 KVAGHPNIVINNAAGNFISPTERLSPNAWKTITDIVLNGTAFVTLEIGKQLIKAQKGAAFLSITTIYAETGS-------- 171 (302)
T ss_dssp HHTCSCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECCTHHHHCC--------
T ss_pred HHcCCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCCEEEEEcccccccCC--------
Confidence 68999999996432 2334556789999999999998887532 222499999998766432
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeecceecCCCCCCC-hHHHHHHHHHcCCceEEEeeCCCCcce
Q 012176 261 HRTDQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPDM-AYFFFTKDILQGKTIDVYKTQDDREVA 336 (469)
Q Consensus 261 ~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~Gp~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~ 336 (469)
.+...|+.+|.+.|.+++.++.+ +|+++++||||.|++++..... .-..+...+..+.++
T Consensus 172 ----~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~p~------------ 235 (302)
T 1w6u_A 172 ----GFVVPSASAKAGVEAMSKSLAAEWGKYGMRFNVIQPGPIKTKGAFSRLDPTGTFEKEMIGRIPC------------ 235 (302)
T ss_dssp ----TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCC------CCTTSHHHHHHHTTCTT------------
T ss_pred ----CCcchhHHHHHHHHHHHHHHHHHhhhcCcEEEEEeeccCCCcchhhhcccchhhHHHHHhcCCc------------
Confidence 34578999999999999999887 6899999999999997321110 000111233333222
Q ss_pred EecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCCcccHHHHHHHHHHHhCC
Q 012176 337 RDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNT 391 (469)
Q Consensus 337 ~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~~vt~~el~~~i~~~~g~ 391 (469)
..+.+++|+|++++.++..... ...|++|++.++..+++.++++.+.+..|.
T Consensus 236 ~~~~~~~dva~~~~~l~~~~~~---~~~G~~~~v~gg~~~~~~~~~~~~~~~~g~ 287 (302)
T 1w6u_A 236 GRLGTVEELANLAAFLCSDYAS---WINGAVIKFDGGEEVLISGEFNDLRKVTKE 287 (302)
T ss_dssp SSCBCHHHHHHHHHHHTSGGGT---TCCSCEEEESTTHHHHHHSTTGGGGGCCHH
T ss_pred CCCCCHHHHHHHHHHHcCCccc---ccCCCEEEECCCeeeccCCccccchhhccc
Confidence 2477899999999999865421 235689999999989998888888776654
|
| >1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of seven strands in the order 3214567; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.94 E-value=9.6e-26 Score=218.38 Aligned_cols=241 Identities=13% Similarity=0.087 Sum_probs=164.5
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHh---h-ccCCeEEEEecCCCHHHHHHhhcc
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKL---L-QKHQVFIVEGDLNDAPLLTKLFDV 191 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~---~-~~~~v~~v~~Dl~d~~~l~~~~~~ 191 (469)
.++|+|+||||+|+||++++++|+++|++|++++|+.+ ......... . ...++.++.+|++|+++++++++.
T Consensus 4 ~~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~----~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 79 (278)
T 1spx_A 4 FAEKVAIITGSSNGIGRATAVLFAREGAKVTITGRHAE----RLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILST 79 (278)
T ss_dssp TTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHH----HHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHH
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHH----HHHHHHHHHHhcccCCCceeEEecccCCHHHHHHHHHH
Confidence 56789999999999999999999999999999999542 122222221 1 123688999999999999998874
Q ss_pred C-----CccEEEEcccccChh----h----hccChHHHHHHHHHHHHHHHHHHHhc----CCCCeEEEEcCccc-cCCCC
Q 012176 192 V-----PFTHVLHLAAQAGVR----Y----AMQNPQSYVASNIAGFVNLLEVCKSV----NPQPSIVWASSSSV-YGLNT 253 (469)
Q Consensus 192 ~-----~~d~Vih~Aa~~~~~----~----~~~~~~~~~~~Nv~~~~~ll~aa~~~----~~~~~~V~~SS~~v-yg~~~ 253 (469)
+ ++|+||||||..... . ..++++..+++|+.++.++++++... + ++||++||... +.+.
T Consensus 80 ~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~--g~iv~isS~~~~~~~~- 156 (278)
T 1spx_A 80 TLGKFGKLDILVNNAGAAIPDSQSKTGTAQSIESYDATLNLNLRSVIALTKKAVPHLSSTK--GEIVNISSIASGLHAT- 156 (278)
T ss_dssp HHHHHSCCCEEEECCC-------------CCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEECCTTSSSSCC-
T ss_pred HHHHcCCCCEEEECCCCCCCcccccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcC--CeEEEEecccccccCC-
Confidence 3 569999999974321 1 34456678999999999999987653 4 49999999876 5422
Q ss_pred CCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeecceecCCCCCC----ChH---HHHHHHHHcCCc
Q 012176 254 QVPFSESHRTDQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPD----MAY---FFFTKDILQGKT 323 (469)
Q Consensus 254 ~~~~~E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~Gp~~~~~----~~~---~~~~~~~~~g~~ 323 (469)
.+...|+.+|.+.|.+++.++.+ +|+++++||||.|+++..... ... ......+....+
T Consensus 157 -----------~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~p 225 (278)
T 1spx_A 157 -----------PDFPYYSIAKAAIDQYTRNTAIDLIQHGIRVNSISPGLVATGFGSAMGMPEETSKKFYSTMATMKECVP 225 (278)
T ss_dssp -----------TTSHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCCCC--------------HHHHHHHHHHCT
T ss_pred -----------CCccHHHHHHHHHHHHHHHHHHHHHhcCcEEEEEecCcccCccccccccCchhhhhhhHHHHHHHhcCC
Confidence 34567999999999999998866 489999999999999854321 000 000222221111
Q ss_pred eEEEeeCCCCcceEecccHHHHHHHHHHHhccCCCCCCC-CCceEEEeCCCCcccHHHHHHHHHHHh
Q 012176 324 IDVYKTQDDREVARDFTYIDDVVKGCVGATGSGGKKRGP-AQLRVYNLGNTSPVPVGRLVSILENLL 389 (469)
Q Consensus 324 ~~~~~~~~~~~~~~~~v~v~Dva~~~~~~~~~~~~~~~~-~~~~iyni~~~~~vt~~el~~~i~~~~ 389 (469)
...+.+++|+|++++.++..+.. . ..|++|++.++..+++.|+++.+.+++
T Consensus 226 ------------~~~~~~~~dvA~~v~~l~s~~~~---~~~tG~~~~vdgG~~~~~~~~~~~~~~~~ 277 (278)
T 1spx_A 226 ------------AGVMGQPQDIAEVIAFLADRKTS---SYIIGHQLVVDGGSSLIMGLHCQDFAKLL 277 (278)
T ss_dssp ------------TSSCBCHHHHHHHHHHHHCHHHH---TTCCSCEEEESTTGGGC------------
T ss_pred ------------CcCCCCHHHHHHHHHHHcCcccc---CcccCcEEEECCCcccccCcccccHHHHh
Confidence 12478999999999998865321 1 346999999999999999999998764
|
| >4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A | Back alignment and structure |
|---|
Probab=99.93 E-value=2.3e-26 Score=220.61 Aligned_cols=236 Identities=14% Similarity=0.085 Sum_probs=170.8
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccC--
Q 012176 115 RPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV-- 192 (469)
Q Consensus 115 ~~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~-- 192 (469)
..++|+||||||+|+||++++++|+++|++|++++|+.+ ........ + ...+.++.+|++|+++++++++..
T Consensus 5 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~----~~~~~~~~-~-~~~~~~~~~D~~~~~~v~~~~~~~~~ 78 (259)
T 4e6p_A 5 RLEGKSALITGSARGIGRAFAEAYVREGATVAIADIDIE----RARQAAAE-I-GPAAYAVQMDVTRQDSIDAAIAATVE 78 (259)
T ss_dssp TTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHH----HHHHHHHH-H-CTTEEEEECCTTCHHHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHH----HHHHHHHH-h-CCCceEEEeeCCCHHHHHHHHHHHHH
Confidence 367899999999999999999999999999999998432 11222122 1 347899999999999999888754
Q ss_pred ---CccEEEEcccccChh----hhccChHHHHHHHHHHHHHHHHHHHhc----CCCCeEEEEcCccccCCCCCCCCCCCC
Q 012176 193 ---PFTHVLHLAAQAGVR----YAMQNPQSYVASNIAGFVNLLEVCKSV----NPQPSIVWASSSSVYGLNTQVPFSESH 261 (469)
Q Consensus 193 ---~~d~Vih~Aa~~~~~----~~~~~~~~~~~~Nv~~~~~ll~aa~~~----~~~~~~V~~SS~~vyg~~~~~~~~E~~ 261 (469)
++|+||||||..... ...++++..+++|+.++.++++++... +..++||++||...+.+.
T Consensus 79 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~--------- 149 (259)
T 4e6p_A 79 HAGGLDILVNNAALFDLAPIVEITRESYEKLFAINVAGTLFTLQAAARQMIAQGRGGKIINMASQAGRRGE--------- 149 (259)
T ss_dssp HSSSCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTSCC---------
T ss_pred HcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEECChhhccCC---------
Confidence 679999999975432 234556678999999999999987543 323489999998776432
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCCCCChHHHHHHHHHcC---CceEEEeeCCCCcc
Q 012176 262 RTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQG---KTIDVYKTQDDREV 335 (469)
Q Consensus 262 ~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g---~~~~~~~~~~~~~~ 335 (469)
.+...|+.+|.+.|.+++.++.++ |+++++|+||.|++|.... ...++...... ...... .+...
T Consensus 150 ---~~~~~Y~asK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~---~~~~~~~~~~~~~~~~~~~~---~~~~p 220 (259)
T 4e6p_A 150 ---ALVAIYCATKAAVISLTQSAGLDLIKHRINVNAIAPGVVDGEHWDG---VDALFARYENRPRGEKKRLV---GEAVP 220 (259)
T ss_dssp ---TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCSTTHHH---HHHHHHHHHTCCTTHHHHHH---HHHST
T ss_pred ---CCChHHHHHHHHHHHHHHHHHHHhhhcCCEEEEEEECCCccchhhh---hhhhhhhhccCChHHHHHHH---hccCC
Confidence 345789999999999999999775 8999999999999984321 11111111111 000111 11233
Q ss_pred eEecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCCccc
Q 012176 336 ARDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTSPVP 377 (469)
Q Consensus 336 ~~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~~vt 377 (469)
...+.+++|+|++++.++..... ...|++|++.+|..+|
T Consensus 221 ~~r~~~~~dva~~v~~L~s~~~~---~itG~~i~vdgG~~~s 259 (259)
T 4e6p_A 221 FGRMGTAEDLTGMAIFLASAESD---YIVSQTYNVDGGNWMS 259 (259)
T ss_dssp TSSCBCTHHHHHHHHHTTSGGGT---TCCSCEEEESTTSSCC
T ss_pred CCCCcCHHHHHHHHHHHhCCccC---CCCCCEEEECcChhcC
Confidence 45689999999999988764422 3456999999987553
|
| >3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans} | Back alignment and structure |
|---|
Probab=99.93 E-value=3.9e-25 Score=211.59 Aligned_cols=229 Identities=17% Similarity=0.094 Sum_probs=168.0
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhh-ccCCeEEEEecCCCHHHHHHhhccC--
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLL-QKHQVFIVEGDLNDAPLLTKLFDVV-- 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~v~~v~~Dl~d~~~l~~~~~~~-- 192 (469)
.++|+|+||||+|+||++++++|+++|++|++++|+.. .......... ...++.++.+|++|+++++++++..
T Consensus 11 l~~k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~----~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 86 (260)
T 3awd_A 11 LDNRVAIVTGGAQNIGLACVTALAEAGARVIIADLDEA----MATKAVEDLRMEGHDVSSVVMDVTNTESVQNAVRSVHE 86 (260)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH----HHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHH----HHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHH
Confidence 56789999999999999999999999999999999532 1111111111 1347899999999999999888743
Q ss_pred ---CccEEEEcccccC-h----hhhccChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEEcCccccCCCCCCCCCCC
Q 012176 193 ---PFTHVLHLAAQAG-V----RYAMQNPQSYVASNIAGFVNLLEVCKS----VNPQPSIVWASSSSVYGLNTQVPFSES 260 (469)
Q Consensus 193 ---~~d~Vih~Aa~~~-~----~~~~~~~~~~~~~Nv~~~~~ll~aa~~----~~~~~~~V~~SS~~vyg~~~~~~~~E~ 260 (469)
++|+||||||... . ....++.+..+++|+.++.++++++.. .+.. +||++||...+.....
T Consensus 87 ~~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~-~iv~~sS~~~~~~~~~------ 159 (260)
T 3awd_A 87 QEGRVDILVACAGICISEVKAEDMTDGQWLKQVDINLNGMFRSCQAVGRIMLEQKQG-VIVAIGSMSGLIVNRP------ 159 (260)
T ss_dssp HHSCCCEEEECCCCCCCSCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE-EEEEECCGGGTSCCSS------
T ss_pred HcCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhcCCC-EEEEEecchhcccCCC------
Confidence 5799999999743 1 122334567899999999999998764 3443 9999999876543211
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceE
Q 012176 261 HRTDQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVAR 337 (469)
Q Consensus 261 ~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 337 (469)
.+...|+.+|.+.|.+++.++.+ +|+++++||||.|+++........+.+...+..+.++ .
T Consensus 160 ----~~~~~Y~~sK~a~~~~~~~l~~e~~~~gi~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~~~~~------------~ 223 (260)
T 3awd_A 160 ----QQQAAYNASKAGVHQYIRSLAAEWAPHGIRANAVAPTYIETTLTRFGMEKPELYDAWIAGTPM------------G 223 (260)
T ss_dssp ----SCCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCTTTHHHHTCHHHHHHHHHTCTT------------S
T ss_pred ----CCccccHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeeeeccchhhcccCChHHHHHHHhcCCc------------C
Confidence 23478999999999999999887 6899999999999998643110112333444433322 2
Q ss_pred ecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCC
Q 012176 338 DFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTS 374 (469)
Q Consensus 338 ~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~ 374 (469)
.+++++|+|++++.++..... ...|++|++.++.
T Consensus 224 ~~~~~~dva~~~~~l~~~~~~---~~~G~~~~v~gg~ 257 (260)
T 3awd_A 224 RVGQPDEVASVVQFLASDAAS---LMTGAIVNVDAGF 257 (260)
T ss_dssp SCBCHHHHHHHHHHHHSGGGT---TCCSCEEEESTTT
T ss_pred CCCCHHHHHHHHHHHhCchhc---cCCCcEEEECCce
Confidence 478899999999998865421 2356899999875
|
| >3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=8.3e-25 Score=207.42 Aligned_cols=226 Identities=17% Similarity=0.121 Sum_probs=165.9
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccC-Cc
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV-PF 194 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~-~~ 194 (469)
.++++|+||||+|+||++++++|+++|++|++++|+.+ ....... +..+++++.+|++|+++++++++.. ++
T Consensus 5 l~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~----~~~~~~~---~~~~~~~~~~D~~~~~~~~~~~~~~~~i 77 (244)
T 3d3w_A 5 LAGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQA----DLDSLVR---ECPGIEPVCVDLGDWEATERALGSVGPV 77 (244)
T ss_dssp CTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHH----HHHHHHH---HSTTCEEEECCTTCHHHHHHHHTTCCCC
T ss_pred cCCcEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHH----HHHHHHH---HcCCCCEEEEeCCCHHHHHHHHHHcCCC
Confidence 56789999999999999999999999999999998432 1111111 1236778899999999999999854 57
Q ss_pred cEEEEcccccChh----hhccChHHHHHHHHHHHHHHHHHHHhc----CCCCeEEEEcCccccCCCCCCCCCCCCCCCCC
Q 012176 195 THVLHLAAQAGVR----YAMQNPQSYVASNIAGFVNLLEVCKSV----NPQPSIVWASSSSVYGLNTQVPFSESHRTDQP 266 (469)
Q Consensus 195 d~Vih~Aa~~~~~----~~~~~~~~~~~~Nv~~~~~ll~aa~~~----~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p 266 (469)
|+||||||..... ...++.+..+++|+.++.++++++... +..++||++||...+... .+
T Consensus 78 d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~------------~~ 145 (244)
T 3d3w_A 78 DLLVNNAAVALLQPFLEVTKEAFDRSFEVNLRAVIQVSQIVARGLIARGVPGAIVNVSSQCSQRAV------------TN 145 (244)
T ss_dssp CEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSCC------------TT
T ss_pred CEEEECCccCCCcchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEeCchhhccCC------------CC
Confidence 9999999974422 223455679999999999999887653 422499999998876532 34
Q ss_pred CChHHHHHHHHHHHHHHHHHH---hCCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceEecccHH
Q 012176 267 ASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYID 343 (469)
Q Consensus 267 ~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~ 343 (469)
...|+.+|.+.|.+++.++.+ .|+++++||||.|+++..........+...+..+.+ ...+++++
T Consensus 146 ~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~ 213 (244)
T 3d3w_A 146 HSVYCSTKGALDMLTKVMALELGPHKIRVNAVNPTVVMTSMGQATWSDPHKAKTMLNRIP------------LGKFAEVE 213 (244)
T ss_dssp BHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBTTTTHHHHSCSTTHHHHHHHTCT------------TCSCBCHH
T ss_pred CchHHHHHHHHHHHHHHHHHHhcccCeEEEEEEeccccccchhhhccChHHHHHHHhhCC------------CCCCcCHH
Confidence 578999999999999999876 489999999999999753210000011222222222 23688999
Q ss_pred HHHHHHHHHhccCCCCCCCCCceEEEeCCCCc
Q 012176 344 DVVKGCVGATGSGGKKRGPAQLRVYNLGNTSP 375 (469)
Q Consensus 344 Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~~ 375 (469)
|+|++++.++..... ...|++|++.++..
T Consensus 214 dva~~~~~l~~~~~~---~~~G~~~~v~gG~~ 242 (244)
T 3d3w_A 214 HVVNAILFLLSDRSG---MTTGSTLPVEGGFW 242 (244)
T ss_dssp HHHHHHHHHHSGGGT---TCCSCEEEESTTGG
T ss_pred HHHHHHHHHcCcccc---CCCCCEEEECCCcc
Confidence 999999999875421 23468999998754
|
| >3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.93 E-value=2.1e-24 Score=208.32 Aligned_cols=241 Identities=15% Similarity=0.062 Sum_probs=179.1
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccC--
Q 012176 115 RPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV-- 192 (469)
Q Consensus 115 ~~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~-- 192 (469)
..++|+|+||||+|+||++++++|+++|++|++++|+.+.. ....... ..++.++.+|++|+++++++++..
T Consensus 8 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~----~~~~~~~--~~~~~~~~~Dv~~~~~v~~~~~~~~~ 81 (271)
T 3tzq_B 8 ELENKVAIITGACGGIGLETSRVLARAGARVVLADLPETDL----AGAAASV--GRGAVHHVVDLTNEVSVRALIDFTID 81 (271)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSCH----HHHHHHH--CTTCEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEcCCHHHH----HHHHHHh--CCCeEEEECCCCCHHHHHHHHHHHHH
Confidence 36789999999999999999999999999999999976532 2222222 347889999999999999988854
Q ss_pred ---CccEEEEcccccCh------hhhccChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEEcCccccCCCCCCCCCC
Q 012176 193 ---PFTHVLHLAAQAGV------RYAMQNPQSYVASNIAGFVNLLEVC----KSVNPQPSIVWASSSSVYGLNTQVPFSE 259 (469)
Q Consensus 193 ---~~d~Vih~Aa~~~~------~~~~~~~~~~~~~Nv~~~~~ll~aa----~~~~~~~~~V~~SS~~vyg~~~~~~~~E 259 (469)
++|+||||||.... ....++++..+++|+.++.++++++ ++.+.. +||++||...+...
T Consensus 82 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g-~iv~isS~~~~~~~------- 153 (271)
T 3tzq_B 82 TFGRLDIVDNNAAHSDPADMLVTQMTVDVWDDTFTVNARGTMLMCKYAIPRLISAGGG-AIVNISSATAHAAY------- 153 (271)
T ss_dssp HHSCCCEEEECCCCCCTTCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCE-EEEEECCGGGTSBC-------
T ss_pred HcCCCCEEEECCCCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCC-EEEEECCHHHcCCC-------
Confidence 67999999997532 2234556689999999999999988 555544 99999998876432
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcce
Q 012176 260 SHRTDQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVA 336 (469)
Q Consensus 260 ~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 336 (469)
.+...|+.+|.+.+.+++.++.+ +|+++++|+||.|++|....... ..+...+....++
T Consensus 154 -----~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~-~~~~~~~~~~~~~------------ 215 (271)
T 3tzq_B 154 -----DMSTAYACTKAAIETLTRYVATQYGRHGVRCNAIAPGLVRTPRLEVGLP-QPIVDIFATHHLA------------ 215 (271)
T ss_dssp -----SSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCTTTC---C-HHHHHHHHTTSTT------------
T ss_pred -----CCChHHHHHHHHHHHHHHHHHHHHhhcCEEEEEEEeCCCcCccccccCC-HHHHHHHHhcCCC------------
Confidence 34578999999999999999987 68999999999999986542211 2333334333332
Q ss_pred EecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCCcccHHHHHHHHHHHhC
Q 012176 337 RDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLN 390 (469)
Q Consensus 337 ~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~~vt~~el~~~i~~~~g 390 (469)
..+..++|+|++++.++..... -..|+++++.+|....+..+.+.....++
T Consensus 216 ~r~~~p~dvA~~v~~L~s~~~~---~itG~~i~vdGG~~~~~~~~~~~~~~~~~ 266 (271)
T 3tzq_B 216 GRIGEPHEIAELVCFLASDRAA---FITGQVIAADSGLLAHLPGLPQIRASVAE 266 (271)
T ss_dssp SSCBCHHHHHHHHHHHHSGGGT---TCCSCEEEESTTTTTBCTTHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHhCcccC---CcCCCEEEECCCccccCCCccccCCcccc
Confidence 2366799999999998865432 34569999999854333444444444443
|
| >2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.6e-26 Score=218.62 Aligned_cols=228 Identities=16% Similarity=0.074 Sum_probs=165.3
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccC--CccE
Q 012176 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--PFTH 196 (469)
Q Consensus 119 ~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~--~~d~ 196 (469)
|+||||||+|+||++++++|+++|++|++++|..+.... .+.+|++|.++++++++.. ++|+
T Consensus 2 k~vlVtGasg~iG~~l~~~L~~~g~~V~~~~r~~~~~~~----------------~~~~D~~~~~~~~~~~~~~~~~~d~ 65 (255)
T 2dkn_A 2 SVIAITGSASGIGAALKELLARAGHTVIGIDRGQADIEA----------------DLSTPGGRETAVAAVLDRCGGVLDG 65 (255)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSSSEEC----------------CTTSHHHHHHHHHHHHHHHTTCCSE
T ss_pred cEEEEeCCCcHHHHHHHHHHHhCCCEEEEEeCChhHccc----------------cccCCcccHHHHHHHHHHcCCCccE
Confidence 589999999999999999999999999999996542110 1568999999999998743 5699
Q ss_pred EEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhc----CCCCeEEEEcCccccCCCCCCC-CC-------CCCC--
Q 012176 197 VLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSV----NPQPSIVWASSSSVYGLNTQVP-FS-------ESHR-- 262 (469)
Q Consensus 197 Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~----~~~~~~V~~SS~~vyg~~~~~~-~~-------E~~~-- 262 (469)
||||||.... ..+++..+++|+.++.++++++... +.. +||++||..+|+.....+ .. |+.+
T Consensus 66 vi~~Ag~~~~---~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~-~iv~~sS~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (255)
T 2dkn_A 66 LVCCAGVGVT---AANSGLVVAVNYFGVSALLDGLAEALSRGQQP-AAVIVGSIAATQPGAAELPMVEAMLAGDEARAIE 141 (255)
T ss_dssp EEECCCCCTT---SSCHHHHHHHHTHHHHHHHHHHHHHHHTSSSC-EEEEECCGGGGSTTGGGCHHHHHHHHTCHHHHHH
T ss_pred EEECCCCCCc---chhHHHHHHHHhHHHHHHHHHHHHHhhhcCCc-eEEEEeccccccccccccchhhhhcccchhhhhh
Confidence 9999997542 3567889999999999999987654 434 999999999987542111 10 0000
Q ss_pred ----CCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcc
Q 012176 263 ----TDQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREV 335 (469)
Q Consensus 263 ----~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 335 (469)
...+.+.|+.+|.+.|.+++.++.+ +|++++++|||.|+|+... .++.....+...... . + .
T Consensus 142 ~~~~~~~~~~~Y~~sK~a~~~~~~~~~~~~~~~gi~v~~v~pg~v~~~~~~------~~~~~~~~~~~~~~~---~-~-~ 210 (255)
T 2dkn_A 142 LAEQQGQTHLAYAGSKYAVTCLARRNVVDWAGRGVRLNVVAPGAVETPLLQ------ASKADPRYGESTRRF---V-A-P 210 (255)
T ss_dssp HHHHHCCHHHHHHHHHHHHHHHHHHTHHHHHHTTCEEEEEEECCBCSHHHH------HHHHCTTTHHHHHSC---C-C-T
T ss_pred hccccCCcchhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEcCCcccchhhh------hcccchhhHHHHHHH---H-H-H
Confidence 0024578999999999999999876 5999999999999997321 111100000000000 0 1 3
Q ss_pred eEecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCCcccHHH
Q 012176 336 ARDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTSPVPVGR 380 (469)
Q Consensus 336 ~~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~~vt~~e 380 (469)
..++++++|+|++++.++..+.. ...|++||++++..+++.|
T Consensus 211 ~~~~~~~~dva~~~~~l~~~~~~---~~~G~~~~v~gg~~~~~~e 252 (255)
T 2dkn_A 211 LGRGSEPREVAEAIAFLLGPQAS---FIHGSVLFVDGGMDALMRA 252 (255)
T ss_dssp TSSCBCHHHHHHHHHHHHSGGGT---TCCSCEEEESTTHHHHHCT
T ss_pred hcCCCCHHHHHHHHHHHhCCCcc---cceeeEEEecCCeEeeeec
Confidence 34789999999999999876521 2346899999998776654
|
| >3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.45A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.7e-24 Score=207.71 Aligned_cols=216 Identities=14% Similarity=0.145 Sum_probs=168.4
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccC---
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~--- 192 (469)
.++|+||||||+|+||++++++|+++|++|++++|...... ...+.++.+|++|+++++++++.+
T Consensus 26 ~~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~------------~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 93 (260)
T 3un1_A 26 NQQKVVVITGASQGIGAGLVRAYRDRNYRVVATSRSIKPSA------------DPDIHTVAGDISKPETADRIVREGIER 93 (260)
T ss_dssp TTCCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSCCCCS------------STTEEEEESCTTSHHHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChhhcc------------cCceEEEEccCCCHHHHHHHHHHHHHH
Confidence 56789999999999999999999999999999999765322 237899999999999999988854
Q ss_pred --CccEEEEcccccCh----hhhccChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEEcCccccCCCCCCCCCCCCC
Q 012176 193 --PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVC----KSVNPQPSIVWASSSSVYGLNTQVPFSESHR 262 (469)
Q Consensus 193 --~~d~Vih~Aa~~~~----~~~~~~~~~~~~~Nv~~~~~ll~aa----~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~ 262 (469)
++|+||||||.... ....++++..+++|+.++.++++++ ++.+.. +||++||..++.....
T Consensus 94 ~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g-~iv~isS~~~~~~~~~-------- 164 (260)
T 3un1_A 94 FGRIDSLVNNAGVFLAKPFVEMTQEDYDHNLGVNVAGFFHITQRAAAEMLKQGSG-HIVSITTSLVDQPMVG-------- 164 (260)
T ss_dssp HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCE-EEEEECCTTTTSCBTT--------
T ss_pred CCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCc-EEEEEechhhccCCCC--------
Confidence 67999999997532 2234556688999999999999987 445544 9999999877643221
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceEec
Q 012176 263 TDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDF 339 (469)
Q Consensus 263 ~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 339 (469)
.+...|+.+|.+.+.+++.++.++ |+++++|+||.|++|..... ....+....+ ...+
T Consensus 165 --~~~~~Y~~sKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~t~~~~~~-----~~~~~~~~~p------------~~r~ 225 (260)
T 3un1_A 165 --MPSALASLTKGGLNAVTRSLAMEFSRSGVRVNAVSPGVIKTPMHPAE-----THSTLAGLHP------------VGRM 225 (260)
T ss_dssp --CCCHHHHHHHHHHHHHHHHHHHHTTTTTEEEEEEEECCBCCTTSCGG-----GHHHHHTTST------------TSSC
T ss_pred --CccHHHHHHHHHHHHHHHHHHHHhCcCCeEEEEEeecCCCCCCCCHH-----HHHHHhccCC------------CCCC
Confidence 456789999999999999999887 89999999999999865431 1222222222 2346
Q ss_pred ccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCCcc
Q 012176 340 TYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTSPV 376 (469)
Q Consensus 340 v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~~v 376 (469)
.+++|+|++++.+.+.. ...|++|++.+|..+
T Consensus 226 ~~~~dva~av~~L~~~~-----~itG~~i~vdGG~~~ 257 (260)
T 3un1_A 226 GEIRDVVDAVLYLEHAG-----FITGEILHVDGGQNA 257 (260)
T ss_dssp BCHHHHHHHHHHHHHCT-----TCCSCEEEESTTGGG
T ss_pred cCHHHHHHHHHHhcccC-----CCCCcEEEECCCeec
Confidence 78999999999884332 345699999998654
|
| >3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=7e-25 Score=210.60 Aligned_cols=231 Identities=13% Similarity=0.054 Sum_probs=168.0
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhc--cCCeEEEEecCCCHHHHHHhhccC-
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQ--KHQVFIVEGDLNDAPLLTKLFDVV- 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~--~~~v~~v~~Dl~d~~~l~~~~~~~- 192 (469)
.++|+||||||+|+||++++++|+++|++|++++|+.+ ........... ..++.++.+|++|+++++++++.+
T Consensus 5 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~----~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 80 (263)
T 3ai3_A 5 ISGKVAVITGSSSGIGLAIAEGFAKEGAHIVLVARQVD----RLHEAARSLKEKFGVRVLEVAVDVATPEGVDAVVESVR 80 (263)
T ss_dssp CTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHH----HHHHHHHHHHHHHCCCEEEEECCTTSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHH----HHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHH
Confidence 56789999999999999999999999999999999542 11221111111 347899999999999999888743
Q ss_pred ----CccEEEEcccccChh----hhccChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEEcCccccCCCCCCCCCCC
Q 012176 193 ----PFTHVLHLAAQAGVR----YAMQNPQSYVASNIAGFVNLLEVCK----SVNPQPSIVWASSSSVYGLNTQVPFSES 260 (469)
Q Consensus 193 ----~~d~Vih~Aa~~~~~----~~~~~~~~~~~~Nv~~~~~ll~aa~----~~~~~~~~V~~SS~~vyg~~~~~~~~E~ 260 (469)
++|+||||||..... ...++++..+++|+.++.++++++. +.+.. +||++||...+.+.
T Consensus 81 ~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g-~iv~isS~~~~~~~-------- 151 (263)
T 3ai3_A 81 SSFGGADILVNNAGTGSNETIMEAADEKWQFYWELLVMAAVRLARGLVPGMRARGGG-AIIHNASICAVQPL-------- 151 (263)
T ss_dssp HHHSSCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE-EEEEECCGGGTSCC--------
T ss_pred HHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCc-EEEEECchhhcCCC--------
Confidence 579999999974321 2334556789999999999998864 34544 99999998887532
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeecceecCCCCCCCh---------HHHHHHHHHcCCceEEEe
Q 012176 261 HRTDQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPDMA---------YFFFTKDILQGKTIDVYK 328 (469)
Q Consensus 261 ~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~Gp~~~~~~~---------~~~~~~~~~~g~~~~~~~ 328 (469)
.+...|+.+|.+.+.+++.++.+ +|+++++||||.|++|....... ...+...+....
T Consensus 152 ----~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 221 (263)
T 3ai3_A 152 ----WYEPIYNVTKAALMMFSKTLATEVIKDNIRVNCINPGLILTPDWIKTAKELTKDNGGDWKGYLQSVADEH------ 221 (263)
T ss_dssp ----TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCHHHHHHHHHHTTTTTCCHHHHHHHHHHHH------
T ss_pred ----CCcchHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCcccCcchhhhhHhhhcccCCcHHHHHHHHHhcC------
Confidence 34568999999999999999877 58999999999999974221000 011112121110
Q ss_pred eCCCCcceEecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCCccc
Q 012176 329 TQDDREVARDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTSPVP 377 (469)
Q Consensus 329 ~~~~~~~~~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~~vt 377 (469)
.....+.+++|+|++++.++..+.. ...|++|++.++..++
T Consensus 222 -----~p~~~~~~~~dvA~~~~~l~s~~~~---~~~G~~~~vdgG~~~s 262 (263)
T 3ai3_A 222 -----APIKRFASPEELANFFVFLCSERAT---YSVGSAYFVDGGMLKT 262 (263)
T ss_dssp -----CTTCSCBCHHHHHHHHHHHTSTTCT---TCCSCEEEESTTCCCC
T ss_pred -----CCCCCCcCHHHHHHHHHHHcCcccc---CCCCcEEEECCCcccc
Confidence 1123578999999999998865422 2356999999987654
|
| >3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.93 E-value=9.9e-25 Score=211.67 Aligned_cols=246 Identities=15% Similarity=0.132 Sum_probs=173.1
Q ss_pred CCCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCC--------ChhHHHHHHHhh-ccCCeEEEEecCCCHHH
Q 012176 114 RRPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYY--------DPSLKRARQKLL-QKHQVFIVEGDLNDAPL 184 (469)
Q Consensus 114 ~~~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~--------~~~~~~~~~~~~-~~~~v~~v~~Dl~d~~~ 184 (469)
...++|++|||||+|+||++++++|+++|++|++++|+.... ............ ...++.++.+|++|+++
T Consensus 6 ~~l~~k~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~ 85 (281)
T 3s55_A 6 ADFEGKTALITGGARGMGRSHAVALAEAGADIAICDRCENSDVVGYPLATADDLAETVALVEKTGRRCISAKVDVKDRAA 85 (281)
T ss_dssp CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHHH
T ss_pred cccCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCccccccccccccHHHHHHHHHHHHhcCCeEEEEeCCCCCHHH
Confidence 346789999999999999999999999999999999964321 112222211111 23578999999999999
Q ss_pred HHHhhccC-----CccEEEEcccccCh----hhhccChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEEcCccccCC
Q 012176 185 LTKLFDVV-----PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCK----SVNPQPSIVWASSSSVYGL 251 (469)
Q Consensus 185 l~~~~~~~-----~~d~Vih~Aa~~~~----~~~~~~~~~~~~~Nv~~~~~ll~aa~----~~~~~~~~V~~SS~~vyg~ 251 (469)
++++++.+ ++|+||||||.... ....++++..+++|+.++.++++++. +.+. ++||++||...+.+
T Consensus 86 v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~-g~iv~isS~~~~~~ 164 (281)
T 3s55_A 86 LESFVAEAEDTLGGIDIAITNAGISTIALLPEVESAQWDEVIGTNLTGTFNTIAAVAPGMIKRNY-GRIVTVSSMLGHSA 164 (281)
T ss_dssp HHHHHHHHHHHHTCCCEEEECCCCCCCCCTTCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-EEEEEECCGGGGSC
T ss_pred HHHHHHHHHHhcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCC-CEEEEECChhhcCC
Confidence 99988754 67999999997542 23345567889999999999999863 3444 39999999877643
Q ss_pred CCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeecceecCCCCCCChHHHHHHHHHcCCc---eE
Q 012176 252 NTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKT---ID 325 (469)
Q Consensus 252 ~~~~~~~E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~---~~ 325 (469)
. .+...|+.+|.+.+.+++.++.+ +|+++++|+||.|++|..........+......... ..
T Consensus 165 ~------------~~~~~Y~asK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (281)
T 3s55_A 165 N------------FAQASYVSSKWGVIGLTKCAAHDLVGYGITVNAVAPGNIETPMTHNDFVFGTMRPDLEKPTLKDVES 232 (281)
T ss_dssp C------------TTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEECSBCSTTTSSHHHHHC-------CCHHHHHH
T ss_pred C------------CCCchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCcccCccccchhhhccccccccccchhHHHH
Confidence 2 34578999999999999999986 489999999999999865431110000000000000 00
Q ss_pred EEeeCCCCcceEecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCCccc
Q 012176 326 VYKTQDDREVARDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTSPVP 377 (469)
Q Consensus 326 ~~~~~~~~~~~~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~~vt 377 (469)
... ........+.+++|+|++++.++..... ...|+++++.+|..++
T Consensus 233 ~~~--~~~~~~~~~~~p~dvA~~v~~L~s~~~~---~itG~~i~vdgG~~~~ 279 (281)
T 3s55_A 233 VFA--SLHLQYAPFLKPEEVTRAVLFLVDEASS---HITGTVLPIDAGATAR 279 (281)
T ss_dssp HHH--HHCSSSCSCBCHHHHHHHHHHHHSGGGT---TCCSCEEEESTTGGGG
T ss_pred HHH--hhhccCcCCCCHHHHHHHHHHHcCCccc---CCCCCEEEECCCcccC
Confidence 000 0012225789999999999999876432 2456999999987554
|
| >2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus} | Back alignment and structure |
|---|
Probab=99.92 E-value=3.1e-24 Score=204.07 Aligned_cols=225 Identities=15% Similarity=0.116 Sum_probs=165.8
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhc--cCCeEEEEecCCCHHHHHHhhccC---
Q 012176 118 GMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQ--KHQVFIVEGDLNDAPLLTKLFDVV--- 192 (469)
Q Consensus 118 ~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~--~~~v~~v~~Dl~d~~~l~~~~~~~--- 192 (469)
+|+|+||||+|+||++++++|+++|++|++++|+.+ ........... ..++.++.+|++|+++++++++..
T Consensus 2 ~k~vlItGasggiG~~~a~~l~~~G~~V~~~~r~~~----~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 77 (250)
T 2cfc_A 2 SRVAIVTGASSGNGLAIATRFLARGDRVAALDLSAE----TLEETARTHWHAYADKVLRVRADVADEGDVNAAIAATMEQ 77 (250)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH----HHHHHHHHHSTTTGGGEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHH----HHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHH
Confidence 578999999999999999999999999999998532 12222222101 236899999999999999888743
Q ss_pred --CccEEEEcccccChh-------hhccChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEEcCccccCCCCCCCCCC
Q 012176 193 --PFTHVLHLAAQAGVR-------YAMQNPQSYVASNIAGFVNLLEVCK----SVNPQPSIVWASSSSVYGLNTQVPFSE 259 (469)
Q Consensus 193 --~~d~Vih~Aa~~~~~-------~~~~~~~~~~~~Nv~~~~~ll~aa~----~~~~~~~~V~~SS~~vyg~~~~~~~~E 259 (469)
++|+||||||..... ...++++..+++|+.++.++++++. +.+.. +||++||...+.+.
T Consensus 78 ~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~-~iv~isS~~~~~~~------- 149 (250)
T 2cfc_A 78 FGAIDVLVNNAGITGNSEAGVLHTTPVEQFDKVMAVNVRGIFLGCRAVLPHMLLQGAG-VIVNIASVASLVAF------- 149 (250)
T ss_dssp HSCCCEEEECCCCCCCTTCCSGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE-EEEEECCGGGTSCC-------
T ss_pred hCCCCEEEECCCCCCCCCcchhhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCC-EEEEECChhhccCC-------
Confidence 579999999974322 1234566789999999988777654 34554 99999998776432
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcce
Q 012176 260 SHRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVA 336 (469)
Q Consensus 260 ~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 336 (469)
.+...|+.+|.+.|.+++.++.++ |++++++|||.|+++..........+...+..+.++
T Consensus 150 -----~~~~~Y~~sK~a~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~------------ 212 (250)
T 2cfc_A 150 -----PGRSAYTTSKGAVLQLTKSVAVDYAGSGIRCNAVCPGMIETPMTQWRLDQPELRDQVLARIPQ------------ 212 (250)
T ss_dssp -----TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSTTTHHHHTSHHHHHHHHTTCTT------------
T ss_pred -----CCchhHHHHHHHHHHHHHHHHHHhcccCeEEEEEEeCcCccCccccccCCHHHHHHHHhcCCC------------
Confidence 345789999999999999998776 899999999999998643200012233334433322
Q ss_pred EecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCC
Q 012176 337 RDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTS 374 (469)
Q Consensus 337 ~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~ 374 (469)
..+.+++|+|++++.++..+.. ...|+++++.++.
T Consensus 213 ~~~~~~~dva~~~~~l~~~~~~---~~~G~~~~v~gG~ 247 (250)
T 2cfc_A 213 KEIGTAAQVADAVMFLAGEDAT---YVNGAALVMDGAY 247 (250)
T ss_dssp CSCBCHHHHHHHHHHHHSTTCT---TCCSCEEEESTTG
T ss_pred CCCcCHHHHHHHHHHHcCchhh---cccCCEEEECCce
Confidence 2467899999999999876532 2346899998874
|
| >3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} SCOP: c.2.1.0 PDB: 3sj7_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=2.1e-24 Score=205.26 Aligned_cols=226 Identities=15% Similarity=0.097 Sum_probs=170.4
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhh-ccCCeEEEEecCCCHHHHHHhhccC--
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLL-QKHQVFIVEGDLNDAPLLTKLFDVV-- 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~v~~v~~Dl~d~~~l~~~~~~~-- 192 (469)
..+|++|||||+|+||++++++|+++|++|++++|... ........... ...++.++.+|++|.++++++++..
T Consensus 2 l~~k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~ 78 (246)
T 3osu_A 2 KMTKSALVTGASRGIGRSIALQLAEEGYNVAVNYAGSK---EKAEAVVEEIKAKGVDSFAIQANVADADEVKAMIKEVVS 78 (246)
T ss_dssp CCSCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCH---HHHHHHHHHHHHTTSCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCH---HHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHH
Confidence 35689999999999999999999999999999887442 11122122211 1347889999999999999988754
Q ss_pred ---CccEEEEcccccCh----hhhccChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEEcCccccCCCCCCCCCCCC
Q 012176 193 ---PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVC----KSVNPQPSIVWASSSSVYGLNTQVPFSESH 261 (469)
Q Consensus 193 ---~~d~Vih~Aa~~~~----~~~~~~~~~~~~~Nv~~~~~ll~aa----~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~ 261 (469)
++|+||||||.... ....++++..+++|+.++.++++++ ++.+.. +||++||...+.+.
T Consensus 79 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g-~iv~isS~~~~~~~--------- 148 (246)
T 3osu_A 79 QFGSLDVLVNNAGITRDNLLMRMKEQEWDDVIDTNLKGVFNCIQKATPQMLRQRSG-AIINLSSVVGAVGN--------- 148 (246)
T ss_dssp HHSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE-EEEEECCHHHHHCC---------
T ss_pred HcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCC-EEEEEcchhhcCCC---------
Confidence 67999999997542 2234556679999999999999988 445544 99999997665322
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceEe
Q 012176 262 RTDQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARD 338 (469)
Q Consensus 262 ~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 338 (469)
.+...|+.+|.+.+.+++.++.+ +|+++++|+||.|.++..... ...+...+..+.++ ..
T Consensus 149 ---~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~--~~~~~~~~~~~~p~------------~r 211 (246)
T 3osu_A 149 ---PGQANYVATKAGVIGLTKSAARELASRGITVNAVAPGFIVSDMTDAL--SDELKEQMLTQIPL------------AR 211 (246)
T ss_dssp ---TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBGGGCCSCS--CHHHHHHHHTTCTT------------CS
T ss_pred ---CCChHHHHHHHHHHHHHHHHHHHhcccCeEEEEEEECCCcCCccccc--CHHHHHHHHhcCCC------------CC
Confidence 34578999999999999999875 489999999999999865432 23455555555443 24
Q ss_pred cccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCC
Q 012176 339 FTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTS 374 (469)
Q Consensus 339 ~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~ 374 (469)
+.+++|+|++++.++..... ...|++|++.+|.
T Consensus 212 ~~~~~dva~~v~~l~s~~~~---~itG~~i~vdgG~ 244 (246)
T 3osu_A 212 FGQDTDIANTVAFLASDKAK---YITGQTIHVNGGM 244 (246)
T ss_dssp CBCHHHHHHHHHHHTSGGGT---TCCSCEEEESTTS
T ss_pred CcCHHHHHHHHHHHhCcccc---CCCCCEEEeCCCc
Confidence 66789999999998865432 3456999999874
|
| >2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, LIP metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.9e-24 Score=207.28 Aligned_cols=233 Identities=15% Similarity=0.042 Sum_probs=162.9
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhc--------cCCeEEEEecCCCHHHHHH
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQ--------KHQVFIVEGDLNDAPLLTK 187 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~--------~~~v~~v~~Dl~d~~~l~~ 187 (469)
.++++|+||||+|+||++++++|+++|++|++++|+.. ........... ..++.++.+|++|.+++++
T Consensus 5 ~~~k~vlITGasggiG~~la~~l~~~G~~V~~~~r~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~ 80 (264)
T 2pd6_A 5 LRSALALVTGAGSGIGRAVSVRLAGEGATVAACDLDRA----AAQETVRLLGGPGSKEGPPRGNHAAFQADVSEARAARC 80 (264)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHH----HHHHHHHTC------------CCEEEECCTTSHHHHHH
T ss_pred cCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChH----HHHHHHHHHHhcCccccccCcceEEEEecCCCHHHHHH
Confidence 56789999999999999999999999999999999532 11111111110 1468899999999999999
Q ss_pred hhccC-----Cc-cEEEEcccccCh----hhhccChHHHHHHHHHHHHHHHHHHHhc----CCCCeEEEEcCccccCCCC
Q 012176 188 LFDVV-----PF-THVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCKSV----NPQPSIVWASSSSVYGLNT 253 (469)
Q Consensus 188 ~~~~~-----~~-d~Vih~Aa~~~~----~~~~~~~~~~~~~Nv~~~~~ll~aa~~~----~~~~~~V~~SS~~vyg~~~ 253 (469)
+++.+ ++ |+||||||.... ....++++..+++|+.++.++++++... +..++||++||...+.+.
T Consensus 81 ~~~~~~~~~g~i~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~~~- 159 (264)
T 2pd6_A 81 LLEQVQACFSRPPSVVVSCAGITQDEFLLHMSEDDWDKVIAVNLKGTFLVTQAAAQALVSNGCRGSIINISSIVGKVGN- 159 (264)
T ss_dssp HHHHHHHHHSSCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCTHHHHCC-
T ss_pred HHHHHHHHhCCCCeEEEECCCcCCCcchhhCCHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCceEEEECChhhccCC-
Confidence 88765 34 999999997542 1234556788999999999999987654 312489999997654321
Q ss_pred CCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeC
Q 012176 254 QVPFSESHRTDQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQ 330 (469)
Q Consensus 254 ~~~~~E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~ 330 (469)
.+...|+.+|.+.|.+++.++.+ +|++++++|||.|+++.... ....+...+..+.+
T Consensus 160 -----------~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~--~~~~~~~~~~~~~~------- 219 (264)
T 2pd6_A 160 -----------VGQTNYAASKAGVIGLTQTAARELGRHGIRCNSVLPGFIATPMTQK--VPQKVVDKITEMIP------- 219 (264)
T ss_dssp -----------TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSCC------------CTGGGCT-------
T ss_pred -----------CCChhhHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeecccccchhh--cCHHHHHHHHHhCC-------
Confidence 34578999999999999999877 68999999999999986432 11111111111111
Q ss_pred CCCcceEecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCCcccHHHH
Q 012176 331 DDREVARDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTSPVPVGRL 381 (469)
Q Consensus 331 ~~~~~~~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~~vt~~el 381 (469)
...+.+++|+|++++.++..... ...|+++++.++..++....
T Consensus 220 -----~~~~~~~~dva~~~~~l~~~~~~---~~~G~~~~v~gg~~~~~~~~ 262 (264)
T 2pd6_A 220 -----MGHLGDPEDVADVVAFLASEDSG---YITGTSVEVTGGLFMAENLY 262 (264)
T ss_dssp -----TCSCBCHHHHHHHHHHHHSGGGT---TCCSCEEEESTTC-------
T ss_pred -----CCCCCCHHHHHHHHHHHcCCccc---CCCCCEEEECCCceeccccC
Confidence 13478899999999999865421 24569999999887665543
|
| >1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A | Back alignment and structure |
|---|
Probab=99.92 E-value=2.1e-24 Score=207.45 Aligned_cols=227 Identities=16% Similarity=0.097 Sum_probs=152.3
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhh-ccCCeEEEEecCCCHHHHHHhhcc---
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLL-QKHQVFIVEGDLNDAPLLTKLFDV--- 191 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~v~~v~~Dl~d~~~l~~~~~~--- 191 (469)
.++|+|+||||+|+||++++++|+++|++|++++|+.. .......... ...++.++.+|++|.++++++++.
T Consensus 12 l~~k~vlITGasggiG~~la~~l~~~G~~V~~~~r~~~----~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 87 (266)
T 1xq1_A 12 LKAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEY----ELNECLSKWQKKGFQVTGSVCDASLRPEREKLMQTVSS 87 (266)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHH----HHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHH----HHHHHHHHHHhcCCeeEEEECCCCCHHHHHHHHHHHHH
Confidence 56789999999999999999999999999999999542 1121111111 134689999999999999888864
Q ss_pred ---CCccEEEEcccccChh----hhccChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEEcCccccCCCCCCCCCCC
Q 012176 192 ---VPFTHVLHLAAQAGVR----YAMQNPQSYVASNIAGFVNLLEVC----KSVNPQPSIVWASSSSVYGLNTQVPFSES 260 (469)
Q Consensus 192 ---~~~d~Vih~Aa~~~~~----~~~~~~~~~~~~Nv~~~~~ll~aa----~~~~~~~~~V~~SS~~vyg~~~~~~~~E~ 260 (469)
-++|+||||||..... ...++.+..+++|+.++.++++++ ++.+.. +||++||..++.+.
T Consensus 88 ~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~-~iv~isS~~~~~~~-------- 158 (266)
T 1xq1_A 88 MFGGKLDILINNLGAIRSKPTLDYTAEDFSFHISTNLESAYHLSQLAHPLLKASGCG-NIIFMSSIAGVVSA-------- 158 (266)
T ss_dssp HHTTCCSEEEEECCC------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSC-EEEEEC----------------
T ss_pred HhCCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCc-EEEEEccchhccCC--------
Confidence 3679999999974322 233455678999999999999988 455554 99999998776432
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceE
Q 012176 261 HRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVAR 337 (469)
Q Consensus 261 ~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 337 (469)
.+...|+.+|.+.|.+++.++.++ |+++++||||.|+++...... ...+...+... ....
T Consensus 159 ----~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~-~~~~~~~~~~~------------~~~~ 221 (266)
T 1xq1_A 159 ----SVGSIYSATKGALNQLARNLACEWASDGIRANAVAPAVIATPLAEAVY-DDEFKKVVISR------------KPLG 221 (266)
T ss_dssp ------CCHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEECCSCC------------------------------------
T ss_pred ----CCCchHHHHHHHHHHHHHHHHHHHhHhCcEEEEEeeCCCccchhhhhc-CHHHHHHHHhc------------CCCC
Confidence 345789999999999999998775 899999999999998543211 01111111111 1112
Q ss_pred ecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCCc
Q 012176 338 DFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTSP 375 (469)
Q Consensus 338 ~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~~ 375 (469)
.+++++|+|++++.++..... ...|++|++.++..
T Consensus 222 ~~~~~~dva~~~~~l~~~~~~---~~~G~~~~v~gG~~ 256 (266)
T 1xq1_A 222 RFGEPEEVSSLVAFLCMPAAS---YITGQTICVDGGLT 256 (266)
T ss_dssp --CCGGGGHHHHHHHTSGGGT---TCCSCEEECCCCEE
T ss_pred CCcCHHHHHHHHHHHcCcccc---CccCcEEEEcCCcc
Confidence 478899999999998865321 23468999998864
|
| >2wyu_A Enoyl-[acyl carrier protein] reductase; oxidoreductase, fatty acid biosynthesis, oxidation reduction; 1.50A {Thermus thermophilus} PDB: 1ulu_A 2wyv_A* 2wyw_A* 2yw9_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=2e-24 Score=207.23 Aligned_cols=234 Identities=14% Similarity=0.034 Sum_probs=170.3
Q ss_pred CCCCEEEEEcCC--ChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccC-
Q 012176 116 PNGMTVLVTGAA--GFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV- 192 (469)
Q Consensus 116 ~~~~~VlVtGat--G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~- 192 (469)
.++|+|+||||+ |+||++++++|+++|++|++++|+.. .......... ....+.++.+|++|+++++++++.+
T Consensus 6 l~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~~-~~~~~~~l~~---~~~~~~~~~~D~~~~~~v~~~~~~~~ 81 (261)
T 2wyu_A 6 LSGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAER-LRPEAEKLAE---ALGGALLFRADVTQDEELDALFAGVK 81 (261)
T ss_dssp CTTCEEEEESCCSSSSHHHHHHHHHHHHTCEEEEEESCGG-GHHHHHHHHH---HTTCCEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCCHH-HHHHHHHHHH---hcCCcEEEECCCCCHHHHHHHHHHHH
Confidence 567899999999 99999999999999999999999642 1111111111 1134789999999999999888754
Q ss_pred ----CccEEEEcccccCh--------hhhccChHHHHHHHHHHHHHHHHHHHhcCC-CCeEEEEcCccccCCCCCCCCCC
Q 012176 193 ----PFTHVLHLAAQAGV--------RYAMQNPQSYVASNIAGFVNLLEVCKSVNP-QPSIVWASSSSVYGLNTQVPFSE 259 (469)
Q Consensus 193 ----~~d~Vih~Aa~~~~--------~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~-~~~~V~~SS~~vyg~~~~~~~~E 259 (469)
++|+||||||.... ....++++..+++|+.++.++++++...-. .++||++||.+.+.+.
T Consensus 82 ~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~~------- 154 (261)
T 2wyu_A 82 EAFGGLDYLVHAIAFAPREAMEGRYIDTRRQDWLLALEVSAYSLVAVARRAEPLLREGGGIVTLTYYASEKVV------- 154 (261)
T ss_dssp HHHSSEEEEEECCCCCCHHHHSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEEECGGGTSBC-------
T ss_pred HHcCCCCEEEECCCCCCcccCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHhccCCEEEEEecccccCCC-------
Confidence 67999999997542 223455668999999999999999876521 1389999997766422
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcce
Q 012176 260 SHRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVA 336 (469)
Q Consensus 260 ~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 336 (469)
.+...|+.+|.+.+.+++.++.++ |+++++|+||.|+++..........+...+....++
T Consensus 155 -----~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~p~------------ 217 (261)
T 2wyu_A 155 -----PKYNVMAIAKAALEASVRYLAYELGPKGVRVNAISAGPVRTVAARSIPGFTKMYDRVAQTAPL------------ 217 (261)
T ss_dssp -----TTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCCCCTGGGGCTTHHHHHHHHHHHSTT------------
T ss_pred -----CCchHHHHHHHHHHHHHHHHHHHHhhhCcEEEEEeeCCCcCchhhhccccHHHHHHHHhcCCC------------
Confidence 345679999999999999998776 899999999999998543221223333333333222
Q ss_pred EecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCCcccHHH
Q 012176 337 RDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTSPVPVGR 380 (469)
Q Consensus 337 ~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~~vt~~e 380 (469)
..+.+++|+|++++.++..... ...|++|++.++..++..|
T Consensus 218 ~~~~~~~dva~~v~~l~s~~~~---~~tG~~~~vdgG~~~~~~~ 258 (261)
T 2wyu_A 218 RRNITQEEVGNLGLFLLSPLAS---GITGEVVYVDAGYHIMGME 258 (261)
T ss_dssp SSCCCHHHHHHHHHHHHSGGGT---TCCSCEEEESTTGGGBC--
T ss_pred CCCCCHHHHHHHHHHHcChhhc---CCCCCEEEECCCccccCCC
Confidence 1356799999999998864321 2346999999987655433
|
| >1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.92 E-value=1.9e-24 Score=208.28 Aligned_cols=227 Identities=16% Similarity=0.106 Sum_probs=165.8
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhh-ccCCeEEEEecCCCHHHHHHhhccC--
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLL-QKHQVFIVEGDLNDAPLLTKLFDVV-- 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~v~~v~~Dl~d~~~l~~~~~~~-- 192 (469)
.++|+|+||||+|+||++++++|+++|++|++++|... ........... ...++.++.+|++|+++++++++..
T Consensus 19 ~~~k~vlItGasggiG~~la~~l~~~G~~v~~~~r~~~---~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 95 (274)
T 1ja9_A 19 LAGKVALTTGAGRGIGRGIAIELGRRGASVVVNYGSSS---KAAEEVVAELKKLGAQGVAIQADISKPSEVVALFDKAVS 95 (274)
T ss_dssp TTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCH---HHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCch---HHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHH
Confidence 56789999999999999999999999999999998321 11111111111 1347889999999999999888743
Q ss_pred ---CccEEEEcccccCh----hhhccChHHHHHHHHHHHHHHHHHHHhc---CCCCeEEEEcCcccc-CCCCCCCCCCCC
Q 012176 193 ---PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCKSV---NPQPSIVWASSSSVY-GLNTQVPFSESH 261 (469)
Q Consensus 193 ---~~d~Vih~Aa~~~~----~~~~~~~~~~~~~Nv~~~~~ll~aa~~~---~~~~~~V~~SS~~vy-g~~~~~~~~E~~ 261 (469)
++|+||||||.... ....++++..+++|+.++.++++++... + ++||++||..++ .+.
T Consensus 96 ~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~--~~iv~~sS~~~~~~~~--------- 164 (274)
T 1ja9_A 96 HFGGLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRRG--GRIILTSSIAAVMTGI--------- 164 (274)
T ss_dssp HHSCEEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEEE--EEEEEECCGGGTCCSC---------
T ss_pred HcCCCCEEEECCCCCCCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhC--CEEEEEcChHhccCCC---------
Confidence 56999999997432 2233455678999999999999988764 4 399999998876 422
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCCC-----------CChHHHHHHHHHcCCceEEE
Q 012176 262 RTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRP-----------DMAYFFFTKDILQGKTIDVY 327 (469)
Q Consensus 262 ~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~~-----------~~~~~~~~~~~~~g~~~~~~ 327 (469)
.+...|+.+|.+.|.+++.++.++ |++++++|||.|+++.... ......+...+..+
T Consensus 165 ---~~~~~Y~~sK~a~~~~~~~~~~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 235 (274)
T 1ja9_A 165 ---PNHALYAGSKAAVEGFCRAFAVDCGAKGVTVNCIAPGGVKTDMFDENSWHYAPGGYKGMPQEKIDEGLANM------ 235 (274)
T ss_dssp ---CSCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBSSHHHHHHGGGTSTTCCTTCCHHHHHHHHHHT------
T ss_pred ---CCCchHHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcccccchhcccccccccccccCchHHHHHHHHhc------
Confidence 345679999999999999998775 8999999999998863210 00001222222222
Q ss_pred eeCCCCcceEecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCC
Q 012176 328 KTQDDREVARDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTS 374 (469)
Q Consensus 328 ~~~~~~~~~~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~ 374 (469)
.....+++++|+|++++.++..+.. ...|++|+++++.
T Consensus 236 ------~~~~~~~~~~dva~~i~~l~~~~~~---~~~G~~~~v~gG~ 273 (274)
T 1ja9_A 236 ------NPLKRIGYPADIGRAVSALCQEESE---WINGQVIKLTGGG 273 (274)
T ss_dssp ------STTSSCBCHHHHHHHHHHHHSGGGT---TCCSCEEEESTTC
T ss_pred ------CCCCCccCHHHHHHHHHHHhCcccc---cccCcEEEecCCc
Confidence 2234588999999999999875421 2346899998863
|
| >3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.92 E-value=5.4e-24 Score=206.41 Aligned_cols=241 Identities=17% Similarity=0.161 Sum_probs=170.3
Q ss_pred CCCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCC---------CChhHHHHHHHhh-ccCCeEEEEecCCCHH
Q 012176 114 RRPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSY---------YDPSLKRARQKLL-QKHQVFIVEGDLNDAP 183 (469)
Q Consensus 114 ~~~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~---------~~~~~~~~~~~~~-~~~~v~~v~~Dl~d~~ 183 (469)
...++|+|+||||+|+||++++++|+++|++|++++|.... ............. ....+.++.+|++|++
T Consensus 11 ~~l~gk~~lVTGas~gIG~a~a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~ 90 (280)
T 3pgx_A 11 GSLQGRVAFITGAARGQGRSHAVRLAAEGADIIACDICAPVSASVTYAPASPEDLDETARLVEDQGRKALTRVLDVRDDA 90 (280)
T ss_dssp CTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHTTTCCEEEEECCTTCHH
T ss_pred cccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeccccccccccccccCHHHHHHHHHHHHhcCCeEEEEEcCCCCHH
Confidence 34678999999999999999999999999999999985321 1112222222221 2347889999999999
Q ss_pred HHHHhhccC-----CccEEEEcccccChh----hhccChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEEcCccccC
Q 012176 184 LLTKLFDVV-----PFTHVLHLAAQAGVR----YAMQNPQSYVASNIAGFVNLLEVCK----SVNPQPSIVWASSSSVYG 250 (469)
Q Consensus 184 ~l~~~~~~~-----~~d~Vih~Aa~~~~~----~~~~~~~~~~~~Nv~~~~~ll~aa~----~~~~~~~~V~~SS~~vyg 250 (469)
+++++++.+ ++|+||||||..... ...++++..+++|+.++.++++++. +.+..++||++||...+.
T Consensus 91 ~v~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~ 170 (280)
T 3pgx_A 91 ALRELVADGMEQFGRLDVVVANAGVLSWGRVWELTDEQWDTVIGVNLTGTWRTLRATVPAMIEAGNGGSIVVVSSSAGLK 170 (280)
T ss_dssp HHHHHHHHHHHHHCCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCSCEEEEEECCGGGTS
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCCEEEEEcchhhcc
Confidence 999988754 679999999975432 2344556789999999999999874 333234899999987764
Q ss_pred CCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEE
Q 012176 251 LNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVY 327 (469)
Q Consensus 251 ~~~~~~~~E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~ 327 (469)
+. .....|+.+|.+.+.+++.++.+ +|+++++|+||.|++|..........+.........+...
T Consensus 171 ~~------------~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (280)
T 3pgx_A 171 AT------------PGNGHYSASKHGLTALTNTLAIELGEYGIRVNSIHPYSVETPMIEPEAMMEIFARHPSFVHSFPPM 238 (280)
T ss_dssp CC------------TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSTTCCHHHHHHHHHHCGGGGGGSCCB
T ss_pred CC------------CCchhHHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcccCcccchhhhhhhhhcCchhhhhhhhc
Confidence 32 34578999999999999999887 5899999999999998655321111111100001111111
Q ss_pred eeCCCCcceEecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCC
Q 012176 328 KTQDDREVARDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTS 374 (469)
Q Consensus 328 ~~~~~~~~~~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~ 374 (469)
......+.+++|+|++++.++..... ...|+++++.+|.
T Consensus 239 -----~~~~~r~~~p~dvA~~v~~L~s~~~~---~itG~~i~vdGG~ 277 (280)
T 3pgx_A 239 -----PVQPNGFMTADEVADVVAWLAGDGSG---TLTGTQIPVDKGA 277 (280)
T ss_dssp -----TTBCSSCBCHHHHHHHHHHHHSGGGT---TCSSCEEEESTTG
T ss_pred -----ccCCCCCCCHHHHHHHHHHHhCcccc---CCCCCEEEECCCc
Confidence 11112489999999999998865432 2456999998875
|
| >3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=99.92 E-value=5.1e-24 Score=206.24 Aligned_cols=245 Identities=15% Similarity=0.113 Sum_probs=174.1
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCC--------ChhHHHHHHHhh-ccCCeEEEEecCCCHHHH
Q 012176 115 RPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYY--------DPSLKRARQKLL-QKHQVFIVEGDLNDAPLL 185 (469)
Q Consensus 115 ~~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~--------~~~~~~~~~~~~-~~~~v~~v~~Dl~d~~~l 185 (469)
..++|+||||||+|+||.+++++|+++|++|++++|..... ............ ...++.++.+|++|++++
T Consensus 10 ~l~gk~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v 89 (278)
T 3sx2_A 10 PLTGKVAFITGAARGQGRAHAVRLAADGADIIAVDLCDQIASVPYPLATPEELAATVKLVEDIGSRIVARQADVRDRESL 89 (278)
T ss_dssp TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHHTCCEEEEECCTTCHHHH
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEecccccccccccccchHHHHHHHHHHHhcCCeEEEEeCCCCCHHHH
Confidence 36789999999999999999999999999999999863211 112222211111 235799999999999999
Q ss_pred HHhhccC-----CccEEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEEcCccccCCCCCCC
Q 012176 186 TKLFDVV-----PFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKS----VNPQPSIVWASSSSVYGLNTQVP 256 (469)
Q Consensus 186 ~~~~~~~-----~~d~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~----~~~~~~~V~~SS~~vyg~~~~~~ 256 (469)
+++++.+ ++|+||||||........++++..+++|+.++.++++++.. .+..++||++||...+.+...
T Consensus 90 ~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~-- 167 (278)
T 3sx2_A 90 SAALQAGLDELGRLDIVVANAGIAPMSAGDDGWHDVIDVNLTGVYHTIKVAIPTLVKQGTGGSIVLISSSAGLAGVGS-- 167 (278)
T ss_dssp HHHHHHHHHHHCCCCEEEECCCCCCCSSTHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCSCEEEEEECCGGGTSCCCC--
T ss_pred HHHHHHHHHHcCCCCEEEECCCCCCCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEEccHHhcCCCcc--
Confidence 9988754 67999999998654444567788999999999999998643 332348999999876542211
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCC
Q 012176 257 FSESHRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDR 333 (469)
Q Consensus 257 ~~E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 333 (469)
...+...|+.+|.+.+.+++.++.++ |+++++|+||.|.++..........+............. +..
T Consensus 168 ------~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 238 (278)
T 3sx2_A 168 ------ADPGSVGYVAAKHGVVGLMRVYANLLAGQMIRVNSIHPSGVETPMINNEFTREWLAKMAAATDTPGAM---GNA 238 (278)
T ss_dssp ------SSHHHHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCBSSTTTSSHHHHHHHHHHHHHCC--CTT---SCS
T ss_pred ------CCCCchHhHHHHHHHHHHHHHHHHHHhccCcEEEEEecCCccCccchhhhHHHHHhhccchhhhhhhh---hhh
Confidence 00234679999999999999998775 699999999999998655322112222222222211111 122
Q ss_pred cceEecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCC
Q 012176 334 EVARDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTS 374 (469)
Q Consensus 334 ~~~~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~ 374 (469)
.. ..+++++|+|++++.++..... -..|+++++.+|.
T Consensus 239 ~p-~~~~~p~dvA~~v~~l~s~~~~---~itG~~i~vdGG~ 275 (278)
T 3sx2_A 239 MP-VEVLAPEDVANAVAWLVSDQAR---YITGVTLPVDAGF 275 (278)
T ss_dssp SS-CSSBCHHHHHHHHHHHTSGGGT---TCCSCEEEESTTT
T ss_pred cC-cCcCCHHHHHHHHHHHhCcccc---cccCCEEeECCCc
Confidence 23 6789999999999998865422 3456999998874
|
| >3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.92 E-value=4.9e-24 Score=204.05 Aligned_cols=226 Identities=16% Similarity=0.116 Sum_probs=162.5
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccC---
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~--- 192 (469)
.++|++|||||+|+||++++++|+++|++|++++|+.+........ . ...+.++.+|++|+++++++++.+
T Consensus 5 l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~----~--~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 78 (257)
T 3tpc_A 5 LKSRVFIVTGASSGLGAAVTRMLAQEGATVLGLDLKPPAGEEPAAE----L--GAAVRFRNADVTNEADATAALAFAKQE 78 (257)
T ss_dssp CTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSCC------------------CEEEECCTTCHHHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHH----h--CCceEEEEccCCCHHHHHHHHHHHHHH
Confidence 5789999999999999999999999999999999977643322211 1 237889999999999999988754
Q ss_pred --CccEEEEcccccCh--------hhhccChHHHHHHHHHHHHHHHHHHHhc---------CCCCeEEEEcCccccCCCC
Q 012176 193 --PFTHVLHLAAQAGV--------RYAMQNPQSYVASNIAGFVNLLEVCKSV---------NPQPSIVWASSSSVYGLNT 253 (469)
Q Consensus 193 --~~d~Vih~Aa~~~~--------~~~~~~~~~~~~~Nv~~~~~ll~aa~~~---------~~~~~~V~~SS~~vyg~~~ 253 (469)
++|+||||||.... ....++++..+++|+.++.++++++... +..++||++||...+.+.
T Consensus 79 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~~~~~~g~iv~isS~~~~~~~- 157 (257)
T 3tpc_A 79 FGHVHGLVNCAGTAPGEKILGRSGPHALDSFARTVAVNLIGTFNMIRLAAEVMSQGEPDADGERGVIVNTASIAAFDGQ- 157 (257)
T ss_dssp HSCCCEEEECCCCCCCCCSEETTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSCCCTTSCCEEEEEECCTHHHHCC-
T ss_pred cCCCCEEEECCCCCCCCccccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhccccCCCCCeEEEEEechhhccCC-
Confidence 67999999997532 2233556788999999999999987653 122489999998776432
Q ss_pred CCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeC
Q 012176 254 QVPFSESHRTDQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQ 330 (469)
Q Consensus 254 ~~~~~E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~ 330 (469)
.+...|+.+|.+.+.+++.++.+ +|+++++|+||.|.++..... ...+...+....++
T Consensus 158 -----------~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~--~~~~~~~~~~~~p~------ 218 (257)
T 3tpc_A 158 -----------IGQAAYAASKGGVAALTLPAARELARFGIRVVTIAPGIFDTPMMAGM--PQDVQDALAASVPF------ 218 (257)
T ss_dssp -----------TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBSCC----------------CCSSS------
T ss_pred -----------CCCcchHHHHHHHHHHHHHHHHHHHHcCeEEEEEEeCCCCChhhccC--CHHHHHHHHhcCCC------
Confidence 34578999999999999999877 589999999999999754321 11111111111111
Q ss_pred CCCcceEecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCCccc
Q 012176 331 DDREVARDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTSPVP 377 (469)
Q Consensus 331 ~~~~~~~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~~vt 377 (469)
...+.+++|+|++++.++... ...|+++++.+|..++
T Consensus 219 -----~~r~~~~~dva~~v~~l~s~~-----~itG~~i~vdGG~~~~ 255 (257)
T 3tpc_A 219 -----PPRLGRAEEYAALVKHICENT-----MLNGEVIRLDGALRMA 255 (257)
T ss_dssp -----SCSCBCHHHHHHHHHHHHHCT-----TCCSCEEEESTTCCC-
T ss_pred -----CCCCCCHHHHHHHHHHHcccC-----CcCCcEEEECCCccCC
Confidence 135788999999999998753 3556999999986554
|
| >3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.92 E-value=3.3e-24 Score=208.07 Aligned_cols=238 Identities=13% Similarity=0.100 Sum_probs=165.7
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhh--ccCCeEEEEecCCCHHHHHHhhccC
Q 012176 115 RPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLL--QKHQVFIVEGDLNDAPLLTKLFDVV 192 (469)
Q Consensus 115 ~~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~v~~v~~Dl~d~~~l~~~~~~~ 192 (469)
+.++|+||||||+|+||++++++|+++|++|++++|... ........... ....+.++.+|++|+++++++++..
T Consensus 22 ~l~~k~~lVTGas~GIG~~ia~~la~~G~~V~~~~r~~~---~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~ 98 (281)
T 3v2h_A 22 SMMTKTAVITGSTSGIGLAIARTLAKAGANIVLNGFGAP---DEIRTVTDEVAGLSSGTVLHHPADMTKPSEIADMMAMV 98 (281)
T ss_dssp CCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEECCCCH---HHHHHHHHHHHTTCSSCEEEECCCTTCHHHHHHHHHHH
T ss_pred ccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCh---HHHHHHHHHHhhccCCcEEEEeCCCCCHHHHHHHHHHH
Confidence 467899999999999999999999999999999998432 11222222221 1357899999999999999888754
Q ss_pred -----CccEEEEcccccChh----hhccChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEEcCccccCCCCCCCCCC
Q 012176 193 -----PFTHVLHLAAQAGVR----YAMQNPQSYVASNIAGFVNLLEVC----KSVNPQPSIVWASSSSVYGLNTQVPFSE 259 (469)
Q Consensus 193 -----~~d~Vih~Aa~~~~~----~~~~~~~~~~~~Nv~~~~~ll~aa----~~~~~~~~~V~~SS~~vyg~~~~~~~~E 259 (469)
++|+||||||..... ...++++..+++|+.++.++++++ ++.+.. +||++||...+.+.
T Consensus 99 ~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g-~iv~isS~~~~~~~------- 170 (281)
T 3v2h_A 99 ADRFGGADILVNNAGVQFVEKIEDFPVEQWDRIIAVNLSSSFHTIRGAIPPMKKKGWG-RIINIASAHGLVAS------- 170 (281)
T ss_dssp HHHTSSCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE-EEEEECCGGGTSCC-------
T ss_pred HHHCCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCC-EEEEECCcccccCC-------
Confidence 679999999974432 234456678999999999999987 344443 89999998776432
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCCCCChHHHHHHHHHcCCc-eEEEeeCCCCcc
Q 012176 260 SHRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKT-IDVYKTQDDREV 335 (469)
Q Consensus 260 ~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~ 335 (469)
.....|+.+|.+.+.+++.++.++ |+++++|+||.|.++.................... ...+ .++..
T Consensus 171 -----~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~p 242 (281)
T 3v2h_A 171 -----PFKSAYVAAKHGIMGLTKTVALEVAESGVTVNSICPGYVLTPLVEKQIPDQARTRGITEEQVINEVM---LKGQP 242 (281)
T ss_dssp -----TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCC-------------------------------CCT
T ss_pred -----CCchHHHHHHHHHHHHHHHHHHHhhhcCcEEEEEECCCCcCcchhhhcchhhhhcCCCHHHHHHHHH---HhcCC
Confidence 345689999999999999998775 89999999999999854321100000000000000 0011 22445
Q ss_pred eEecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCC
Q 012176 336 ARDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTS 374 (469)
Q Consensus 336 ~~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~ 374 (469)
...+++++|+|++++.++..... ...|+++++.+|.
T Consensus 243 ~~r~~~~edvA~~v~~L~s~~a~---~itG~~i~vdGG~ 278 (281)
T 3v2h_A 243 TKKFITVEQVASLALYLAGDDAA---QITGTHVSMDGGW 278 (281)
T ss_dssp TCSCBCHHHHHHHHHHHHSSGGG---GCCSCEEEESTTG
T ss_pred CCCccCHHHHHHHHHHHcCCCcC---CCCCcEEEECCCc
Confidence 56799999999999998865422 2456999998874
|
| >1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase, oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A* 1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A* 1dfi_A* 3pje_A* 3pjd_A* 3pjf_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=3.6e-24 Score=205.94 Aligned_cols=231 Identities=12% Similarity=0.060 Sum_probs=170.1
Q ss_pred CCCCEEEEEcCC--ChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccC-
Q 012176 116 PNGMTVLVTGAA--GFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV- 192 (469)
Q Consensus 116 ~~~~~VlVtGat--G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~- 192 (469)
.++|+|+||||+ |+||++++++|+++|++|++++|+. ............ .....++.+|++|+++++++++.+
T Consensus 7 l~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~-~~~~~~~~l~~~---~~~~~~~~~D~~~~~~v~~~~~~~~ 82 (265)
T 1qsg_A 7 LSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQND-KLKGRVEEFAAQ---LGSDIVLQCDVAEDASIDTMFAELG 82 (265)
T ss_dssp TTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESST-TTHHHHHHHHHH---TTCCCEEECCTTCHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEcCcH-HHHHHHHHHHHh---cCCcEEEEccCCCHHHHHHHHHHHH
Confidence 567899999999 9999999999999999999999965 221222221111 124578999999999999888754
Q ss_pred ----CccEEEEcccccCh--------h-hhccChHHHHHHHHHHHHHHHHHHHhcCC-CCeEEEEcCccccCCCCCCCCC
Q 012176 193 ----PFTHVLHLAAQAGV--------R-YAMQNPQSYVASNIAGFVNLLEVCKSVNP-QPSIVWASSSSVYGLNTQVPFS 258 (469)
Q Consensus 193 ----~~d~Vih~Aa~~~~--------~-~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~-~~~~V~~SS~~vyg~~~~~~~~ 258 (469)
++|+||||||.... . ...++++..+++|+.++.++++++..... .++||++||...+.+.
T Consensus 83 ~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~~------ 156 (265)
T 1qsg_A 83 KVWPKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNPGSALLTLSYLGAERAI------ 156 (265)
T ss_dssp TTCSSEEEEEECCCCCCGGGGSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECGGGTSBC------
T ss_pred HHcCCCCEEEECCCCCCccccCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEEcchhhccCC------
Confidence 67999999997542 1 23455678999999999999999876521 1389999997766422
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcc
Q 012176 259 ESHRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREV 335 (469)
Q Consensus 259 E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 335 (469)
.+...|+.+|.+.+.+++.++.++ |+++++|+||.|+++..........+...+..+.++
T Consensus 157 ------~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~p~----------- 219 (265)
T 1qsg_A 157 ------PNYNVMGLAKASLEANVRYMANAMGPEGVRVNAISAGPIRTLAASGIKDFRKMLAHCEAVTPI----------- 219 (265)
T ss_dssp ------TTTTHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCCCCTTGGGSTTHHHHHHHHHHHSTT-----------
T ss_pred ------CCchHHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeCCCccchhhcccccHHHHHHHHhcCCC-----------
Confidence 345689999999999999998875 899999999999998543222223333333333222
Q ss_pred eEecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCCccc
Q 012176 336 ARDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTSPVP 377 (469)
Q Consensus 336 ~~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~~vt 377 (469)
..+.+++|+|++++.++..... ...|++|++.++..++
T Consensus 220 -~~~~~~~dva~~v~~l~s~~~~---~~tG~~~~vdgG~~~~ 257 (265)
T 1qsg_A 220 -RRTVTIEDVGNSAAFLCSDLSA---GISGEVVHVDGGFSIA 257 (265)
T ss_dssp -SSCCCHHHHHHHHHHHTSGGGT---TCCSCEEEESTTGGGB
T ss_pred -CCCCCHHHHHHHHHHHhCchhc---CccCCEEEECCCcCCC
Confidence 1367899999999998865321 2356899999986544
|
| >2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=2.9e-24 Score=204.78 Aligned_cols=227 Identities=18% Similarity=0.115 Sum_probs=164.0
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCe-EEEEecCCCHHHHHHhhcc---
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQV-FIVEGDLNDAPLLTKLFDV--- 191 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v-~~v~~Dl~d~~~l~~~~~~--- 191 (469)
.++|+|+||||+|+||++++++|+++|++|++++|+.+ ......... ...+ .++.+|++|.++++++++.
T Consensus 9 ~~~k~vlITGasggiG~~la~~l~~~G~~V~~~~r~~~----~~~~~~~~~--~~~~~~~~~~D~~~~~~~~~~~~~~~~ 82 (254)
T 2wsb_A 9 LDGACAAVTGAGSGIGLEICRAFAASGARLILIDREAA----ALDRAAQEL--GAAVAARIVADVTDAEAMTAAAAEAEA 82 (254)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH----HHHHHHHHH--GGGEEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHH----HHHHHHHHh--cccceeEEEEecCCHHHHHHHHHHHHh
Confidence 57789999999999999999999999999999999532 112111111 2356 8899999999999988864
Q ss_pred -CCccEEEEcccccChh----hhccChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEEcCccccCCCCCCCCCCCCC
Q 012176 192 -VPFTHVLHLAAQAGVR----YAMQNPQSYVASNIAGFVNLLEVC----KSVNPQPSIVWASSSSVYGLNTQVPFSESHR 262 (469)
Q Consensus 192 -~~~d~Vih~Aa~~~~~----~~~~~~~~~~~~Nv~~~~~ll~aa----~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~ 262 (469)
-++|+||||||..... ...++.+..+++|+.++.++++++ ++.+.. +||++||...+.....
T Consensus 83 ~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~-~iv~isS~~~~~~~~~-------- 153 (254)
T 2wsb_A 83 VAPVSILVNSAGIARLHDALETDDATWRQVMAVNVDGMFWASRAFGRAMVARGAG-AIVNLGSMSGTIVNRP-------- 153 (254)
T ss_dssp HSCCCEEEECCCCCCCBCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE-EEEEECCGGGTSCCSS--------
T ss_pred hCCCcEEEECCccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCc-EEEEEecchhccCCCC--------
Confidence 2679999999975432 122344678999999988777765 345554 9999999887653311
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceEec
Q 012176 263 TDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDF 339 (469)
Q Consensus 263 ~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 339 (469)
.+...|+.+|.+.|.+++.++.++ |+++++||||.|+++........+.+...+....++ ..+
T Consensus 154 --~~~~~Y~~sK~a~~~~~~~~~~~~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~------------~~~ 219 (254)
T 2wsb_A 154 --QFASSYMASKGAVHQLTRALAAEWAGRGVRVNALAPGYVATEMTLKMRERPELFETWLDMTPM------------GRC 219 (254)
T ss_dssp --SCBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCSHHHHHHHTCHHHHHHHHHTSTT------------SSC
T ss_pred --CcchHHHHHHHHHHHHHHHHHHHHhhcCeEEEEEEecccCchhhhccccChHHHHHHHhcCCC------------CCC
Confidence 234789999999999999998775 899999999999997422100001223333333221 347
Q ss_pred ccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCC
Q 012176 340 TYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTS 374 (469)
Q Consensus 340 v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~ 374 (469)
++++|+|++++.++..... ...|+++++.++.
T Consensus 220 ~~~~dva~~~~~l~~~~~~---~~~G~~~~v~gG~ 251 (254)
T 2wsb_A 220 GEPSEIAAAALFLASPAAS---YVTGAILAVDGGY 251 (254)
T ss_dssp BCHHHHHHHHHHHHSGGGT---TCCSCEEEESTTG
T ss_pred CCHHHHHHHHHHHhCcccc---cccCCEEEECCCE
Confidence 8999999999998865321 2356899998874
|
| >2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=1.3e-24 Score=208.32 Aligned_cols=230 Identities=12% Similarity=-0.001 Sum_probs=167.1
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhh-ccCCeEEEEecCCCHHHHHHhhccC--
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLL-QKHQVFIVEGDLNDAPLLTKLFDVV-- 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~v~~v~~Dl~d~~~l~~~~~~~-- 192 (469)
.++|+|+||||+|+||++++++|+++|++|++++|+.+ .......... ...++..+.+|++|.++++++++.+
T Consensus 12 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~----~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 87 (260)
T 2zat_A 12 LENKVALVTASTDGIGLAIARRLAQDGAHVVVSSRKQE----NVDRTVATLQGEGLSVTGTVCHVGKAEDRERLVAMAVN 87 (260)
T ss_dssp TTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHH----HHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHH----HHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHH
Confidence 56899999999999999999999999999999999542 1122112211 1346889999999999998888743
Q ss_pred ---CccEEEEcccccCh-----hhhccChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEEcCccccCCCCCCCCCCC
Q 012176 193 ---PFTHVLHLAAQAGV-----RYAMQNPQSYVASNIAGFVNLLEVCK----SVNPQPSIVWASSSSVYGLNTQVPFSES 260 (469)
Q Consensus 193 ---~~d~Vih~Aa~~~~-----~~~~~~~~~~~~~Nv~~~~~ll~aa~----~~~~~~~~V~~SS~~vyg~~~~~~~~E~ 260 (469)
++|+||||||.... ....++++..+++|+.++.++++++. +.+.. +||++||...|.+.
T Consensus 88 ~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~g-~iv~isS~~~~~~~-------- 158 (260)
T 2zat_A 88 LHGGVDILVSNAAVNPFFGNIIDATEEVWDKILHVNVKATVLMTKAVVPEMEKRGGG-SVLIVSSVGAYHPF-------- 158 (260)
T ss_dssp HHSCCCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCE-EEEEECCGGGTSCC--------
T ss_pred HcCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCC-EEEEEechhhcCCC--------
Confidence 57999999996421 22334556889999999999998864 34544 99999998887532
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceE
Q 012176 261 HRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVAR 337 (469)
Q Consensus 261 ~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 337 (469)
.+...|+.+|.+.+.+++.++.++ |+++++|+||.|.++.......-......+... ....
T Consensus 159 ----~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~------------~~~~ 222 (260)
T 2zat_A 159 ----PNLGPYNVSKTALLGLTKNLAVELAPRNIRVNCLAPGLIKTNFSQVLWMDKARKEYMKES------------LRIR 222 (260)
T ss_dssp ----TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSSTTHHHHSSHHHHHHHHHH------------HTCS
T ss_pred ----CCchhHHHHHHHHHHHHHHHHHHhcccCeEEEEEEECcccCccchhcccChHHHHHHHhc------------CCCC
Confidence 345789999999999999998775 899999999999987432100000011111111 1123
Q ss_pred ecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCCccc
Q 012176 338 DFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTSPVP 377 (469)
Q Consensus 338 ~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~~vt 377 (469)
.+.+++|+|++++.++..+.. -..|++|++.+|..++
T Consensus 223 ~~~~~~dva~~v~~l~s~~~~---~~tG~~~~vdgG~~~s 259 (260)
T 2zat_A 223 RLGNPEDCAGIVSFLCSEDAS---YITGETVVVGGGTASR 259 (260)
T ss_dssp SCBCGGGGHHHHHHHTSGGGT---TCCSCEEEESTTCCCC
T ss_pred CCCCHHHHHHHHHHHcCcccC---CccCCEEEECCCcccc
Confidence 478999999999998865422 2356899999987765
|
| >3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.92 E-value=9.7e-24 Score=202.67 Aligned_cols=230 Identities=14% Similarity=0.035 Sum_probs=171.3
Q ss_pred CCCCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhc--cCCeEEEEecCCCHHHHHHhhc
Q 012176 113 PRRPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQ--KHQVFIVEGDLNDAPLLTKLFD 190 (469)
Q Consensus 113 ~~~~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~--~~~v~~v~~Dl~d~~~l~~~~~ 190 (469)
+...++|+||||||+|+||++++++|+++|++|++++|+.+ ........... ..++.++.+|++|+++++++++
T Consensus 5 m~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~----~~~~~~~~l~~~~~~~~~~~~~Dv~~~~~v~~~~~ 80 (262)
T 3pk0_A 5 MFDLQGRSVVVTGGTKGIGRGIATVFARAGANVAVAGRSTA----DIDACVADLDQLGSGKVIGVQTDVSDRAQCDALAG 80 (262)
T ss_dssp TTCCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHH----HHHHHHHHHHTTSSSCEEEEECCTTSHHHHHHHHH
T ss_pred ccCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHH----HHHHHHHHHHhhCCCcEEEEEcCCCCHHHHHHHHH
Confidence 34467899999999999999999999999999999999543 22222222222 2479999999999999998887
Q ss_pred cC-----CccEEEEcccccCh----hhhccChHHHHHHHHHHHHHHHHHHHhc----CCCCeEEEEcCcccc-CCCCCCC
Q 012176 191 VV-----PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCKSV----NPQPSIVWASSSSVY-GLNTQVP 256 (469)
Q Consensus 191 ~~-----~~d~Vih~Aa~~~~----~~~~~~~~~~~~~Nv~~~~~ll~aa~~~----~~~~~~V~~SS~~vy-g~~~~~~ 256 (469)
.. ++|+||||||.... ....++++..+++|+.++.++++++... +.. +||++||...+ .+.
T Consensus 81 ~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g-~iv~isS~~~~~~~~---- 155 (262)
T 3pk0_A 81 RAVEEFGGIDVVCANAGVFPDAPLATMTPEQLNGIFAVNVNGTFYAVQACLDALIASGSG-RVVLTSSITGPITGY---- 155 (262)
T ss_dssp HHHHHHSCCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHSSC-EEEEECCSBTTTBCC----
T ss_pred HHHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCc-EEEEEechhhccCCC----
Confidence 54 67999999997432 2234455678999999999999987654 544 99999997643 111
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCC
Q 012176 257 FSESHRTDQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDR 333 (469)
Q Consensus 257 ~~E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 333 (469)
.+...|+.+|.+.+.+++.++.+ +|+++++|+||.|+++...... ..+...+....++
T Consensus 156 --------~~~~~Y~asK~a~~~l~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~--~~~~~~~~~~~p~--------- 216 (262)
T 3pk0_A 156 --------PGWSHYGATKAAQLGFMRTAAIELAPHKITVNAIMPGNIMTEGLLENG--EEYIASMARSIPA--------- 216 (262)
T ss_dssp --------TTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCCHHHHTTC--HHHHHHHHTTSTT---------
T ss_pred --------CCChhhHHHHHHHHHHHHHHHHHHHhhCcEEEEEEeCcCcCccccccC--HHHHHHHHhcCCC---------
Confidence 34578999999999999999987 5899999999999987432211 2344444444332
Q ss_pred cceEecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCCcc
Q 012176 334 EVARDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTSPV 376 (469)
Q Consensus 334 ~~~~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~~v 376 (469)
..+..++|+|++++.++..... -..|+++++.+|..+
T Consensus 217 ---~r~~~p~dva~~v~~L~s~~~~---~itG~~i~vdGG~~~ 253 (262)
T 3pk0_A 217 ---GALGTPEDIGHLAAFLATKEAG---YITGQAIAVDGGQVL 253 (262)
T ss_dssp ---SSCBCHHHHHHHHHHHHSGGGT---TCCSCEEEESTTTTC
T ss_pred ---CCCcCHHHHHHHHHHHhCcccc---CCcCCEEEECCCeec
Confidence 2367799999999998865422 345699999988654
|
| >3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=2.2e-24 Score=205.89 Aligned_cols=227 Identities=14% Similarity=0.102 Sum_probs=166.7
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCC-CCCCChhHHHHHHHhh-ccCCeEEEEecCCCHHHHHHhhccC-
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNF-NSYYDPSLKRARQKLL-QKHQVFIVEGDLNDAPLLTKLFDVV- 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~-~~~~~~~~~~~~~~~~-~~~~v~~v~~Dl~d~~~l~~~~~~~- 192 (469)
.++|+|+||||+|+||++++++|+++|++|++++|. ... ......... ...++.++.+|++|+++++++++..
T Consensus 5 l~~k~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~~~~----~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 80 (258)
T 3afn_B 5 LKGKRVLITGSSQGIGLATARLFARAGAKVGLHGRKAPAN----IDETIASMRADGGDAAFFAADLATSEACQQLVDEFV 80 (258)
T ss_dssp GTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCCTT----HHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEECCCchhh----HHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHH
Confidence 467899999999999999999999999999999997 332 222111111 1347899999999999999988743
Q ss_pred ----CccEEEEcccc-cCh----hhhccChHHHHHHHHHHHHHHHHHHHh----cC----CCCeEEEEcCccccC-CCCC
Q 012176 193 ----PFTHVLHLAAQ-AGV----RYAMQNPQSYVASNIAGFVNLLEVCKS----VN----PQPSIVWASSSSVYG-LNTQ 254 (469)
Q Consensus 193 ----~~d~Vih~Aa~-~~~----~~~~~~~~~~~~~Nv~~~~~ll~aa~~----~~----~~~~~V~~SS~~vyg-~~~~ 254 (469)
++|+||||||. ... ....++.+..+++|+.++.++++++.. .+ ..++||++||...+. +.
T Consensus 81 ~~~g~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~-- 158 (258)
T 3afn_B 81 AKFGGIDVLINNAGGLVGRKPLPEIDDTFYDAVMDANIRSVVMTTKFALPHLAAAAKASGQTSAVISTGSIAGHTGGG-- 158 (258)
T ss_dssp HHHSSCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTSCEEEEEECCTHHHHCCC--
T ss_pred HHcCCCCEEEECCCCcCCcCccccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcccCCCCCcEEEEecchhhccCCC--
Confidence 56999999996 221 122334567899999999999987643 12 114899999987664 21
Q ss_pred CCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCC
Q 012176 255 VPFSESHRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQD 331 (469)
Q Consensus 255 ~~~~E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 331 (469)
.+...|+.+|.+.|.+++.++.++ |+++++||||.|+++..... ...+...+..+.++
T Consensus 159 ----------~~~~~Y~~sK~a~~~~~~~~~~e~~~~gi~v~~v~Pg~v~t~~~~~~--~~~~~~~~~~~~~~------- 219 (258)
T 3afn_B 159 ----------PGAGLYGAAKAFLHNVHKNWVDFHTKDGVRFNIVSPGTVDTAFHADK--TQDVRDRISNGIPM------- 219 (258)
T ss_dssp ----------TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBSSGGGTTC--CHHHHHHHHTTCTT-------
T ss_pred ----------CCchHHHHHHHHHHHHHHHHHHhhcccCeEEEEEeCCCccccccccc--CHHHHHHHhccCCC-------
Confidence 345789999999999999998775 89999999999999854432 12344444444332
Q ss_pred CCcceEecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCC
Q 012176 332 DREVARDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTS 374 (469)
Q Consensus 332 ~~~~~~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~ 374 (469)
..+++++|+|++++.++..... +...|++|++.++.
T Consensus 220 -----~~~~~~~dva~~~~~l~~~~~~--~~~~G~~~~v~gg~ 255 (258)
T 3afn_B 220 -----GRFGTAEEMAPAFLFFASHLAS--GYITGQVLDINGGQ 255 (258)
T ss_dssp -----CSCBCGGGTHHHHHHHHCHHHH--TTCCSEEEEESTTS
T ss_pred -----CcCCCHHHHHHHHHHHhCcchh--ccccCCEEeECCCc
Confidence 3578999999999998865311 01245999999875
|
| >3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=1.2e-23 Score=201.52 Aligned_cols=230 Identities=12% Similarity=0.051 Sum_probs=170.2
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEE-eCCCCCCChhHHHHHHHhhc-cCCeEEEEecCCCHHHHHHhhccC-
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGL-DNFNSYYDPSLKRARQKLLQ-KHQVFIVEGDLNDAPLLTKLFDVV- 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~-~r~~~~~~~~~~~~~~~~~~-~~~v~~v~~Dl~d~~~l~~~~~~~- 192 (469)
.++|+||||||+|+||++++++|+++|++|+++ +|+.. ........... ..++.++.+|++|+++++++++.+
T Consensus 2 ~~~k~vlVTGas~gIG~aia~~l~~~G~~vv~~~~r~~~----~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~ 77 (258)
T 3oid_A 2 EQNKCALVTGSSRGVGKAAAIRLAENGYNIVINYARSKK----AALETAEEIEKLGVKVLVVKANVGQPAKIKEMFQQID 77 (258)
T ss_dssp -CCCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSCHH----HHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCCEEEEecCCchHHHHHHHHHHHCCCEEEEEcCCCHH----HHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHH
Confidence 357899999999999999999999999999997 66332 12222222211 347899999999999999988765
Q ss_pred ----CccEEEEcccccChh----hhccChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEEcCccccCCCCCCCCCCC
Q 012176 193 ----PFTHVLHLAAQAGVR----YAMQNPQSYVASNIAGFVNLLEVCK----SVNPQPSIVWASSSSVYGLNTQVPFSES 260 (469)
Q Consensus 193 ----~~d~Vih~Aa~~~~~----~~~~~~~~~~~~Nv~~~~~ll~aa~----~~~~~~~~V~~SS~~vyg~~~~~~~~E~ 260 (469)
++|+||||||..... ...++++..+++|+.++.++++++. +.+. ++||++||.+.+.+.
T Consensus 78 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~~-g~iv~isS~~~~~~~-------- 148 (258)
T 3oid_A 78 ETFGRLDVFVNNAASGVLRPVMELEETHWDWTMNINAKALLFCAQEAAKLMEKNGG-GHIVSISSLGSIRYL-------- 148 (258)
T ss_dssp HHHSCCCEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTC-EEEEEEEEGGGTSBC--------
T ss_pred HHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCC-cEEEEECchhhCCCC--------
Confidence 789999999964322 2334556789999999999999874 3443 399999998776432
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceE
Q 012176 261 HRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVAR 337 (469)
Q Consensus 261 ~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 337 (469)
.+...|+.+|.+.+.+++.++.++ |+++++|+||.|.++..........+...+....++ .
T Consensus 149 ----~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~p~------------~ 212 (258)
T 3oid_A 149 ----ENYTTVGVSKAALEALTRYLAVELSPKQIIVNAVSGGAIDTDALKHFPNREDLLEDARQNTPA------------G 212 (258)
T ss_dssp ----TTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEECCBCSGGGGGCTTHHHHHHHHHHHCTT------------S
T ss_pred ----CCcHHHHHHHHHHHHHHHHHHHHHhhcCcEEEEEeeCCCcChhhhhcccCHHHHHHHHhcCCC------------C
Confidence 346789999999999999999875 799999999999987543322223333433333332 2
Q ss_pred ecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCCccc
Q 012176 338 DFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTSPVP 377 (469)
Q Consensus 338 ~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~~vt 377 (469)
.+.+++|+|++++.++..... -..|+++++.+|....
T Consensus 213 r~~~~~dva~~v~~L~s~~~~---~itG~~i~vdGG~~~~ 249 (258)
T 3oid_A 213 RMVEIKDMVDTVEFLVSSKAD---MIRGQTIIVDGGRSLL 249 (258)
T ss_dssp SCBCHHHHHHHHHHHTSSTTT---TCCSCEEEESTTGGGB
T ss_pred CCcCHHHHHHHHHHHhCcccC---CccCCEEEECCCccCC
Confidence 467899999999998876532 3456999999986543
|
| >2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=4.5e-24 Score=204.68 Aligned_cols=230 Identities=13% Similarity=0.066 Sum_probs=165.8
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhc-cCCeEEEEecCCCHHHHHHhhcc---
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQ-KHQVFIVEGDLNDAPLLTKLFDV--- 191 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~v~~v~~Dl~d~~~l~~~~~~--- 191 (469)
.++|+|+||||+|+||++++++|+++|++|++++|+.+ ........... ..++.++.+|++|+++++++++.
T Consensus 7 l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~----~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 82 (260)
T 2ae2_A 7 LEGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQK----ELNDCLTQWRSKGFKVEASVCDLSSRSERQELMNTVAN 82 (260)
T ss_dssp CTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHH----HHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHH----HHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHH
Confidence 56899999999999999999999999999999999542 11211111111 34688999999999999888863
Q ss_pred ---CCccEEEEcccccCh----hhhccChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEEcCccccCCCCCCCCCCC
Q 012176 192 ---VPFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCK----SVNPQPSIVWASSSSVYGLNTQVPFSES 260 (469)
Q Consensus 192 ---~~~d~Vih~Aa~~~~----~~~~~~~~~~~~~Nv~~~~~ll~aa~----~~~~~~~~V~~SS~~vyg~~~~~~~~E~ 260 (469)
-++|+||||||.... ....++++..+++|+.++.++++++. +.+.. +||++||...+.+.
T Consensus 83 ~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g-~iv~isS~~~~~~~-------- 153 (260)
T 2ae2_A 83 HFHGKLNILVNNAGIVIYKEAKDYTVEDYSLIMSINFEAAYHLSVLAHPFLKASERG-NVVFISSVSGALAV-------- 153 (260)
T ss_dssp HTTTCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTSSE-EEEEECCGGGTSCC--------
T ss_pred HcCCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCc-EEEEEcchhhccCC--------
Confidence 257999999997432 22344566789999999999999874 34443 99999998776422
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCC---CCChHHHHHHHHHcCCceEEEeeCCCCc
Q 012176 261 HRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGR---PDMAYFFFTKDILQGKTIDVYKTQDDRE 334 (469)
Q Consensus 261 ~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~---~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 334 (469)
.+...|+.+|.+.|.+++.++.++ |+++++|+||.|.++... ........+..+....+
T Consensus 154 ----~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~----------- 218 (260)
T 2ae2_A 154 ----PYEAVYGATKGAMDQLTRCLAFEWAKDNIRVNGVGPGVIATSLVEMTIQDPEQKENLNKLIDRCA----------- 218 (260)
T ss_dssp ----TTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEECSBCSHHHHHHTTSHHHHHHHHHHHHTST-----------
T ss_pred ----CCcchHHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCCCCCcchhhhccChhhHHHHHHHHhcCC-----------
Confidence 345689999999999999998775 899999999999886311 00000111112222211
Q ss_pred ceEecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCCccc
Q 012176 335 VARDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTSPVP 377 (469)
Q Consensus 335 ~~~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~~vt 377 (469)
...+.+++|+|++++.++..... ...|+++++.++..++
T Consensus 219 -~~~~~~~~dvA~~v~~l~s~~~~---~~tG~~~~vdgG~~~~ 257 (260)
T 2ae2_A 219 -LRRMGEPKELAAMVAFLCFPAAS---YVTGQIIYVDGGLMAN 257 (260)
T ss_dssp -TCSCBCHHHHHHHHHHHHSGGGT---TCCSCEEEESTTGGGC
T ss_pred -CCCCCCHHHHHHHHHHHcCcccc---CCCCCEEEECCCcccc
Confidence 23478999999999988864321 2456999999886543
|
| >3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.92 E-value=7.3e-24 Score=205.93 Aligned_cols=258 Identities=13% Similarity=0.101 Sum_probs=176.2
Q ss_pred CCCCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCC--------hhHHHHHHHhh-ccCCeEEEEecCCCHH
Q 012176 113 PRRPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYD--------PSLKRARQKLL-QKHQVFIVEGDLNDAP 183 (469)
Q Consensus 113 ~~~~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~--------~~~~~~~~~~~-~~~~v~~v~~Dl~d~~ 183 (469)
|...++|+||||||+|+||++++++|+++|++|++++|...... ........... ...++.++.+|++|++
T Consensus 5 m~~l~gk~vlVTGas~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~ 84 (287)
T 3pxx_A 5 MGRVQDKVVLVTGGARGQGRSHAVKLAEEGADIILFDICHDIETNEYPLATSRDLEEAGLEVEKTGRKAYTAEVDVRDRA 84 (287)
T ss_dssp CCTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHTTSCEEEEECCTTCHH
T ss_pred ccccCCCEEEEeCCCChHHHHHHHHHHHCCCeEEEEcccccccccccchhhhHHHHHHHHHHHhcCCceEEEEccCCCHH
Confidence 34467899999999999999999999999999999998633211 11222211111 2357999999999999
Q ss_pred HHHHhhccC-----CccEEEEcccccChh--hhccChHHHHHHHHHHHHHHHHHHHhcC-CCCeEEEEcCccccCCCCCC
Q 012176 184 LLTKLFDVV-----PFTHVLHLAAQAGVR--YAMQNPQSYVASNIAGFVNLLEVCKSVN-PQPSIVWASSSSVYGLNTQV 255 (469)
Q Consensus 184 ~l~~~~~~~-----~~d~Vih~Aa~~~~~--~~~~~~~~~~~~Nv~~~~~ll~aa~~~~-~~~~~V~~SS~~vyg~~~~~ 255 (469)
+++++++.. ++|+||||||..... ...++++..+++|+.++.++++++.... ..++||++||...+......
T Consensus 85 ~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~~~~~ 164 (287)
T 3pxx_A 85 AVSRELANAVAEFGKLDVVVANAGICPLGAHLPVQAFADAFDVDFVGVINTVHAALPYLTSGASIITTGSVAGLIAAAQP 164 (287)
T ss_dssp HHHHHHHHHHHHHSCCCEEEECCCCCCCCTTCCTHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEECCHHHHHHHHCC
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCcCcccCcCCHHHHHHHhhhhhhhhHHHHHHHHHHhhcCcEEEEeccchhccccccc
Confidence 999888754 679999999975432 3345667899999999999999987653 22489999998776543333
Q ss_pred CCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCCCCChHHHHHHHHHcCCc----eEEEe
Q 012176 256 PFSESHRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKT----IDVYK 328 (469)
Q Consensus 256 ~~~E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~----~~~~~ 328 (469)
+..+..+. .+...|+.+|.+.+.+++.++.++ |+++++|+||.|.++..........+......... .....
T Consensus 165 ~~~~~~~~-~~~~~Y~asK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (287)
T 3pxx_A 165 PGAGGPQG-PGGAGYSYAKQLVDSYTLQLAAQLAPQSIRANVIHPTNVNTDMLNSAPMYRQFRPDLEAPSRADALLAFPA 243 (287)
T ss_dssp C-----CH-HHHHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEESSBSSTTTSSHHHHHHHCTTSSSCCHHHHHHHGGG
T ss_pred ccccccCC-CccchHHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCccccccccccchhhhhccccccchhHHHHhhhhh
Confidence 33333222 345679999999999999999876 89999999999999865431111111000000000 00000
Q ss_pred eCCCCcceEecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCCccc
Q 012176 329 TQDDREVARDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTSPVP 377 (469)
Q Consensus 329 ~~~~~~~~~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~~vt 377 (469)
. ......+.+++|+|++++.++..... -..|+++++.+|..+.
T Consensus 244 --~-~~~~~~~~~p~dva~~v~fL~s~~a~---~itG~~i~vdGG~~~~ 286 (287)
T 3pxx_A 244 --M-QAMPTPYVEASDISNAVCFLASDESR---YVTGLQFKVDAGAMLK 286 (287)
T ss_dssp --G-CSSSCSCBCHHHHHHHHHHHHSGGGT---TCCSCEEEESTTGGGG
T ss_pred --h-cccCCCCCCHHHHHhhHheecchhhc---CCCCceEeECchhhhc
Confidence 0 11115689999999999998865422 3456999999986543
|
| >3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis} | Back alignment and structure |
|---|
Probab=99.91 E-value=3e-24 Score=205.50 Aligned_cols=231 Identities=13% Similarity=0.096 Sum_probs=171.5
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhh-ccCCeEEEEecCCCHHHHHHhhccC-
Q 012176 115 RPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLL-QKHQVFIVEGDLNDAPLLTKLFDVV- 192 (469)
Q Consensus 115 ~~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~v~~v~~Dl~d~~~l~~~~~~~- 192 (469)
..++|+++||||+|+||++++++|+++|++|++++|+.+ .......... ...++.++.+|++|+++++++++.+
T Consensus 9 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~----~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~ 84 (256)
T 3gaf_A 9 HLNDAVAIVTGAAAGIGRAIAGTFAKAGASVVVTDLKSE----GAEAVAAAIRQAGGKAIGLECNVTDEQHREAVIKAAL 84 (256)
T ss_dssp CCTTCEEEECSCSSHHHHHHHHHHHHHTCEEEEEESSHH----HHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHH----HHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHH
Confidence 367899999999999999999999999999999999543 1222222211 1357899999999999999888754
Q ss_pred ----CccEEEEcccccCh---hhhccChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEEcCccccCCCCCCCCCCCC
Q 012176 193 ----PFTHVLHLAAQAGV---RYAMQNPQSYVASNIAGFVNLLEVCK----SVNPQPSIVWASSSSVYGLNTQVPFSESH 261 (469)
Q Consensus 193 ----~~d~Vih~Aa~~~~---~~~~~~~~~~~~~Nv~~~~~ll~aa~----~~~~~~~~V~~SS~~vyg~~~~~~~~E~~ 261 (469)
++|+||||||.... ....++++..+++|+.++.++++++. +.+. ++||++||...+.+.
T Consensus 85 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~-g~iv~isS~~~~~~~--------- 154 (256)
T 3gaf_A 85 DQFGKITVLVNNAGGGGPKPFDMPMSDFEWAFKLNLFSLFRLSQLAAPHMQKAGG-GAILNISSMAGENTN--------- 154 (256)
T ss_dssp HHHSCCCEEEECCCCCCCCCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTC-EEEEEECCGGGTCCC---------
T ss_pred HHcCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCC-cEEEEEcCHHHcCCC---------
Confidence 67999999997543 23345567889999999999999874 3443 499999998776432
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceEe
Q 012176 262 RTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARD 338 (469)
Q Consensus 262 ~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 338 (469)
.+...|+.+|.+.+.+++.++.++ |+++++|+||.|.++...... .......+....++ ..
T Consensus 155 ---~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~-~~~~~~~~~~~~p~------------~r 218 (256)
T 3gaf_A 155 ---VRMASYGSSKAAVNHLTRNIAFDVGPMGIRVNAIAPGAIKTDALATVL-TPEIERAMLKHTPL------------GR 218 (256)
T ss_dssp ---TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCHHHHHHC-CHHHHHHHHTTCTT------------SS
T ss_pred ---CCchHHHHHHHHHHHHHHHHHHHHhhhCcEEEEEEEccccCchhhhcc-CHHHHHHHHhcCCC------------CC
Confidence 345789999999999999998775 899999999999886321100 02233333333332 34
Q ss_pred cccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCCcccH
Q 012176 339 FTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTSPVPV 378 (469)
Q Consensus 339 ~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~~vt~ 378 (469)
+.+++|+|++++.++..... -..|+++++.+|...++
T Consensus 219 ~~~~~dva~~~~~L~s~~~~---~itG~~i~vdgG~~~~~ 255 (256)
T 3gaf_A 219 LGEAQDIANAALFLCSPAAA---WISGQVLTVSGGGVQEL 255 (256)
T ss_dssp CBCHHHHHHHHHHHHSGGGT---TCCSCEEEESTTSCCC-
T ss_pred CCCHHHHHHHHHHHcCCccc---CccCCEEEECCCccccC
Confidence 67899999999998865422 34569999999876654
|
| >2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus thermophilus HB8, structural genomics, NPPSFA; HET: NAD; 1.65A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.91 E-value=4.9e-24 Score=203.97 Aligned_cols=229 Identities=14% Similarity=0.064 Sum_probs=164.0
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccC---
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~--- 192 (469)
.++|+||||||+|+||++++++|+++|++|++++|+.+. ...... +. . .++.+|++|+++++++++.+
T Consensus 4 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~-----~~~~~~-~~--~-~~~~~D~~~~~~~~~~~~~~~~~ 74 (256)
T 2d1y_A 4 FAGKGVLVTGGARGIGRAIAQAFAREGALVALCDLRPEG-----KEVAEA-IG--G-AFFQVDLEDERERVRFVEEAAYA 74 (256)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTH-----HHHHHH-HT--C-EEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChhH-----HHHHHH-hh--C-CEEEeeCCCHHHHHHHHHHHHHH
Confidence 567899999999999999999999999999999996542 111111 11 4 78999999999999888754
Q ss_pred --CccEEEEcccccChh----hhccChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEEcCccccCCCCCCCCCCCCC
Q 012176 193 --PFTHVLHLAAQAGVR----YAMQNPQSYVASNIAGFVNLLEVCKS----VNPQPSIVWASSSSVYGLNTQVPFSESHR 262 (469)
Q Consensus 193 --~~d~Vih~Aa~~~~~----~~~~~~~~~~~~Nv~~~~~ll~aa~~----~~~~~~~V~~SS~~vyg~~~~~~~~E~~~ 262 (469)
++|+||||||..... ...++++..+++|+.++.++++++.. .+. ++||++||...+.+.
T Consensus 75 ~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~-g~iv~isS~~~~~~~---------- 143 (256)
T 2d1y_A 75 LGRVDVLVNNAAIAAPGSALTVRLPEWRRVLEVNLTAPMHLSALAAREMRKVGG-GAIVNVASVQGLFAE---------- 143 (256)
T ss_dssp HSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTC-EEEEEECCGGGTSBC----------
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCC-cEEEEEccccccCCC----------
Confidence 679999999975432 22334567899999999999998753 344 399999998765322
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCCCCChHHHHHHHHH-cCCceEEEeeCCCCcceEe
Q 012176 263 TDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDIL-QGKTIDVYKTQDDREVARD 338 (469)
Q Consensus 263 ~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~ 338 (469)
.+...|+.+|.+.|.+++.++.++ |+++++|+||.|.++.. ..++.... .......+ ........
T Consensus 144 --~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~------~~~~~~~~~~~~~~~~~---~~~~~~~~ 212 (256)
T 2d1y_A 144 --QENAAYNASKGGLVNLTRSLALDLAPLRIRVNAVAPGAIATEAV------LEAIALSPDPERTRRDW---EDLHALRR 212 (256)
T ss_dssp --TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHH------HHHHC--------CHHH---HTTSTTSS
T ss_pred --CCChhHHHHHHHHHHHHHHHHHHHhhcCeEEEEEeeCCccCchh------hhccccccCCHHHHHHH---HhcCCCCC
Confidence 345689999999999999998774 89999999999987521 11100000 00000000 01122346
Q ss_pred cccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCCcccH
Q 012176 339 FTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTSPVPV 378 (469)
Q Consensus 339 ~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~~vt~ 378 (469)
+++++|+|++++.++..+.. ...|++|++.++..+++
T Consensus 213 ~~~~~dvA~~~~~l~s~~~~---~~~G~~~~v~gG~~~~~ 249 (256)
T 2d1y_A 213 LGKPEEVAEAVLFLASEKAS---FITGAILPVDGGMTASF 249 (256)
T ss_dssp CBCHHHHHHHHHHHHSGGGT---TCCSCEEEESTTGGGBC
T ss_pred CcCHHHHHHHHHHHhCchhc---CCCCCEEEECCCccccc
Confidence 88999999999998865421 23568999999876544
|
| >1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty acid, structural genomi structural genomics/proteomics initiative, RSGI; HET: ADN; 1.40A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.91 E-value=5.1e-24 Score=201.38 Aligned_cols=215 Identities=17% Similarity=0.099 Sum_probs=164.9
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccC----C
Q 012176 118 GMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV----P 193 (469)
Q Consensus 118 ~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~----~ 193 (469)
+|+||||||+|+||++++++|+++|++|++++|... . ..+.++.+|++|+++++++++.+ +
T Consensus 2 ~k~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~-~--------------~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 66 (242)
T 1uay_A 2 ERSALVTGGASGLGRAAALALKARGYRVVVLDLRRE-G--------------EDLIYVEGDVTREEDVRRAVARAQEEAP 66 (242)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCC-S--------------SSSEEEECCTTCHHHHHHHHHHHHHHSC
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEccCcc-c--------------cceEEEeCCCCCHHHHHHHHHHHHhhCC
Confidence 578999999999999999999999999999999653 1 24588999999999999998743 6
Q ss_pred ccEEEEcccccChhhh----cc----ChHHHHHHHHHHHHHHHHHHHhcCC---------CCeEEEEcCccccCCCCCCC
Q 012176 194 FTHVLHLAAQAGVRYA----MQ----NPQSYVASNIAGFVNLLEVCKSVNP---------QPSIVWASSSSVYGLNTQVP 256 (469)
Q Consensus 194 ~d~Vih~Aa~~~~~~~----~~----~~~~~~~~Nv~~~~~ll~aa~~~~~---------~~~~V~~SS~~vyg~~~~~~ 256 (469)
+|+||||||....... .+ +.+..+++|+.++.++++++..... .++||++||...+.+.
T Consensus 67 ~d~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~---- 142 (242)
T 1uay_A 67 LFAVVSAAGVGLAEKILGKEGPHGLESFRRVLEVNLLGTFNVLRLAAWAMRENPPDAEGQRGVIVNTASVAAFEGQ---- 142 (242)
T ss_dssp EEEEEECCCCCCCCCSBCSSSBCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCCCTTSCSEEEEEECCTHHHHCC----
T ss_pred ceEEEEcccccCcccccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEeCChhhccCC----
Confidence 6999999997433211 11 5678899999999999998865421 1289999998877532
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCC
Q 012176 257 FSESHRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDR 333 (469)
Q Consensus 257 ~~E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 333 (469)
.+...|+.+|.+.|.+++.++.++ |+++++||||.|+++..... ...+...+..+.++ .
T Consensus 143 --------~~~~~Y~~sK~a~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~~~~~--~~~~~~~~~~~~~~--~------ 204 (242)
T 1uay_A 143 --------IGQAAYAASKGGVVALTLPAARELAGWGIRVVTVAPGLFDTPLLQGL--PEKAKASLAAQVPF--P------ 204 (242)
T ss_dssp --------TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSCSSHHHHTS--CHHHHHHHHTTCCS--S------
T ss_pred --------CCCchhhHHHHHHHHHHHHHHHHHhhcCcEEEEEEeccCcchhhhcc--chhHHHHHHhhCCC--c------
Confidence 345789999999999999988764 89999999999999743221 12233334433322 0
Q ss_pred cceEecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCCccc
Q 012176 334 EVARDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTSPVP 377 (469)
Q Consensus 334 ~~~~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~~vt 377 (469)
..+++++|+|++++.++.+. ...|++|++.++..++
T Consensus 205 ---~~~~~~~dva~~~~~l~~~~-----~~~G~~~~v~gG~~~~ 240 (242)
T 1uay_A 205 ---PRLGRPEEYAALVLHILENP-----MLNGEVVRLDGALRMA 240 (242)
T ss_dssp ---CSCCCHHHHHHHHHHHHHCT-----TCCSCEEEESTTCCCC
T ss_pred ---ccCCCHHHHHHHHHHHhcCC-----CCCCcEEEEcCCeecC
Confidence 23788999999999998762 3456999999886543
|
| >3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.2e-23 Score=205.22 Aligned_cols=230 Identities=13% Similarity=0.011 Sum_probs=172.4
Q ss_pred CCCCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcc--CCeEEEEecCCCHHHHHHhhc
Q 012176 113 PRRPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQK--HQVFIVEGDLNDAPLLTKLFD 190 (469)
Q Consensus 113 ~~~~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~--~~v~~v~~Dl~d~~~l~~~~~ 190 (469)
+...++|+||||||+|+||++++++|+++|++|++++|+.+. ........... .++.++.+|++|+++++++++
T Consensus 36 m~~l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~----~~~~~~~l~~~~~~~~~~~~~Dv~d~~~v~~~~~ 111 (293)
T 3rih_A 36 MFDLSARSVLVTGGTKGIGRGIATVFARAGANVAVAARSPRE----LSSVTAELGELGAGNVIGVRLDVSDPGSCADAAR 111 (293)
T ss_dssp TTCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSGGG----GHHHHHHHTTSSSSCEEEEECCTTCHHHHHHHHH
T ss_pred ccCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHH----HHHHHHHHHhhCCCcEEEEEEeCCCHHHHHHHHH
Confidence 344678999999999999999999999999999999996542 22222222222 478999999999999988887
Q ss_pred cC-----CccEEEEcccccCh----hhhccChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEEcCcccc-CCCCCCC
Q 012176 191 VV-----PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVC----KSVNPQPSIVWASSSSVY-GLNTQVP 256 (469)
Q Consensus 191 ~~-----~~d~Vih~Aa~~~~----~~~~~~~~~~~~~Nv~~~~~ll~aa----~~~~~~~~~V~~SS~~vy-g~~~~~~ 256 (469)
.+ ++|+||||||.... ....++++..+++|+.++.++++++ ++.+.. +||++||...+ .+.
T Consensus 112 ~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g-~iV~isS~~~~~~~~---- 186 (293)
T 3rih_A 112 TVVDAFGALDVVCANAGIFPEARLDTMTPEQLSEVLDVNVKGTVYTVQACLAPLTASGRG-RVILTSSITGPVTGY---- 186 (293)
T ss_dssp HHHHHHSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHSSC-EEEEECCSBTTTBBC----
T ss_pred HHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCC-EEEEEeChhhccCCC----
Confidence 55 68999999997543 2234556789999999999999987 355544 99999997653 111
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCC
Q 012176 257 FSESHRTDQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDR 333 (469)
Q Consensus 257 ~~E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 333 (469)
.+...|+.+|.+.+.+++.++.+ +|+++++|+||.|+++..... ...+...+....++.
T Consensus 187 --------~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~t~~~~~~--~~~~~~~~~~~~p~~-------- 248 (293)
T 3rih_A 187 --------PGWSHYGASKAAQLGFMRTAAIELAPRGVTVNAILPGNILTEGLVDM--GEEYISGMARSIPMG-------- 248 (293)
T ss_dssp --------TTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCCHHHHHT--CHHHHHHHHTTSTTS--------
T ss_pred --------CCCHHHHHHHHHHHHHHHHHHHHHhhhCeEEEEEecCCCcCcchhhc--cHHHHHHHHhcCCCC--------
Confidence 34578999999999999999877 489999999999999743211 123444455544432
Q ss_pred cceEecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCCcc
Q 012176 334 EVARDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTSPV 376 (469)
Q Consensus 334 ~~~~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~~v 376 (469)
.+..++|+|++++.++..... -..|+++++.+|..+
T Consensus 249 ----r~~~p~dvA~~v~fL~s~~a~---~itG~~i~vdGG~~~ 284 (293)
T 3rih_A 249 ----MLGSPVDIGHLAAFLATDEAG---YITGQAIVVDGGQVL 284 (293)
T ss_dssp ----SCBCHHHHHHHHHHHHSGGGT---TCCSCEEEESTTTTC
T ss_pred ----CCCCHHHHHHHHHHHhCcccc---CCCCCEEEECCCccC
Confidence 245689999999998865422 345699999988754
|
| >3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.8e-23 Score=200.23 Aligned_cols=231 Identities=12% Similarity=0.097 Sum_probs=168.2
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhc-cCCeEEEEecCCCHHHHHHhhccC--
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQ-KHQVFIVEGDLNDAPLLTKLFDVV-- 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~v~~v~~Dl~d~~~l~~~~~~~-- 192 (469)
.++|+||||||+|+||++++++|+++|++|++++|+.+ ........... ..++.++.+|++|+++++++++.+
T Consensus 4 l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~----~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 79 (257)
T 3imf_A 4 MKEKVVIITGGSSGMGKGMATRFAKEGARVVITGRTKE----KLEEAKLEIEQFPGQILTVQMDVRNTDDIQKMIEQIDE 79 (257)
T ss_dssp TTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHH----HHHHHHHHHCCSTTCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHH----HHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999543 22222222211 347899999999999999988754
Q ss_pred ---CccEEEEcccccCh----hhhccChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEEcCccccCCCCCCCCCCCC
Q 012176 193 ---PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCK----SVNPQPSIVWASSSSVYGLNTQVPFSESH 261 (469)
Q Consensus 193 ---~~d~Vih~Aa~~~~----~~~~~~~~~~~~~Nv~~~~~ll~aa~----~~~~~~~~V~~SS~~vyg~~~~~~~~E~~ 261 (469)
++|+||||||.... ....++++..+++|+.++.++++++. +.+..++||++||...+...
T Consensus 80 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~--------- 150 (257)
T 3imf_A 80 KFGRIDILINNAAGNFICPAEDLSVNGWNSVINIVLNGTFYCSQAIGKYWIEKGIKGNIINMVATYAWDAG--------- 150 (257)
T ss_dssp HHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEECCGGGGSCC---------
T ss_pred HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhhCCCcEEEEECchhhccCC---------
Confidence 67999999996432 22345566899999999999999873 22323499999998776432
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHH----hCCcEEEEeecceecCCCCCCChH-HHHHHHHHcCCceEEEeeCCCCcce
Q 012176 262 RTDQPASLYAATKKAGEEIAHTYNHI----YGLALTGLRFFTVYGPWGRPDMAY-FFFTKDILQGKTIDVYKTQDDREVA 336 (469)
Q Consensus 262 ~~~~p~~~Y~~sK~~~E~~~~~~~~~----~gi~~~ilRp~~v~Gp~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~ 336 (469)
.....|+.+|.+.+.+++.++.+ +|+++++|+||.|.++........ ..+.+.+....+ .
T Consensus 151 ---~~~~~Y~asKaa~~~l~~~la~e~~~~~gIrvn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~p------------~ 215 (257)
T 3imf_A 151 ---PGVIHSAAAKAGVLAMTKTLAVEWGRKYGIRVNAIAPGPIERTGGADKLWISEEMAKRTIQSVP------------L 215 (257)
T ss_dssp ---TTCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCBSSCCCC-------CCSHHHHTTST------------T
T ss_pred ---CCcHHHHHHHHHHHHHHHHHHHHhccccCeEEEEEEECCCcCCcchhhcccCHHHHHHHHhcCC------------C
Confidence 34568999999999999988854 489999999999998854321110 111122222222 2
Q ss_pred EecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCCccc
Q 012176 337 RDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTSPVP 377 (469)
Q Consensus 337 ~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~~vt 377 (469)
..+..++|+|++++.++..... -..|+++++.+|..++
T Consensus 216 ~r~~~pedvA~~v~~L~s~~~~---~itG~~i~vdGG~~~~ 253 (257)
T 3imf_A 216 GRLGTPEEIAGLAYYLCSDEAA---YINGTCMTMDGGQHLH 253 (257)
T ss_dssp CSCBCHHHHHHHHHHHHSGGGT---TCCSCEEEESTTTTSC
T ss_pred CCCcCHHHHHHHHHHHcCchhc---CccCCEEEECCCcccC
Confidence 3477899999999998865432 2456999999987654
|
| >3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.91 E-value=2.6e-23 Score=197.85 Aligned_cols=226 Identities=16% Similarity=0.055 Sum_probs=162.4
Q ss_pred CCCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccC-
Q 012176 114 RRPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV- 192 (469)
Q Consensus 114 ~~~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~- 192 (469)
....+++||||||+|+||++++++|+++|++|++++|+.+ .+...... . ...+.++.+|++|.+.++++++..
T Consensus 10 ~~~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~----~~~~~~~~-~-~~~~~~~~~D~~~~~~~~~~~~~~~ 83 (249)
T 3f9i_A 10 IDLTGKTSLITGASSGIGSAIARLLHKLGSKVIISGSNEE----KLKSLGNA-L-KDNYTIEVCNLANKEECSNLISKTS 83 (249)
T ss_dssp CCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHH----HHHHHHHH-H-CSSEEEEECCTTSHHHHHHHHHTCS
T ss_pred ccCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHH----HHHHHHHH-h-ccCccEEEcCCCCHHHHHHHHHhcC
Confidence 4478899999999999999999999999999999999432 12222222 1 247899999999999999999865
Q ss_pred CccEEEEcccccCh----hhhccChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEEcCccccCCCCCCCCCCCCCCC
Q 012176 193 PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCKS----VNPQPSIVWASSSSVYGLNTQVPFSESHRTD 264 (469)
Q Consensus 193 ~~d~Vih~Aa~~~~----~~~~~~~~~~~~~Nv~~~~~ll~aa~~----~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~ 264 (469)
++|+||||||.... ....++++..+++|+.++.++++++.. .+. ++||++||...+.+.
T Consensus 84 ~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~-g~iv~isS~~~~~~~------------ 150 (249)
T 3f9i_A 84 NLDILVCNAGITSDTLAIRMKDQDFDKVIDINLKANFILNREAIKKMIQKRY-GRIINISSIVGIAGN------------ 150 (249)
T ss_dssp CCSEEEECCC-------------CHHHHHHHHTHHHHHHHHHHHHHHHHHTC-EEEEEECCCCC--CC------------
T ss_pred CCCEEEECCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-cEEEEEccHHhccCC------------
Confidence 68999999997542 244567789999999999999888643 343 399999998776432
Q ss_pred CCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceEeccc
Q 012176 265 QPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTY 341 (469)
Q Consensus 265 ~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~ 341 (469)
.+...|+.+|.+.+.+++.++.+ .|+++++++||.|.++...... ......+..+.+ ...+.+
T Consensus 151 ~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~--~~~~~~~~~~~~------------~~~~~~ 216 (249)
T 3f9i_A 151 PGQANYCASKAGLIGMTKSLSYEVATRGITVNAVAPGFIKSDMTDKLN--EKQREAIVQKIP------------LGTYGI 216 (249)
T ss_dssp SCSHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBC------CC--HHHHHHHHHHCT------------TCSCBC
T ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHcCcEEEEEecCccccCcccccC--HHHHHHHHhcCC------------CCCCcC
Confidence 34578999999999999999876 4899999999999987544321 222222322222 235788
Q ss_pred HHHHHHHHHHHhccCCCCCCCCCceEEEeCCCCc
Q 012176 342 IDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTSP 375 (469)
Q Consensus 342 v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~~ 375 (469)
++|+|++++.++..... ...|++|++.+|..
T Consensus 217 ~~dva~~~~~l~s~~~~---~~tG~~~~vdgG~~ 247 (249)
T 3f9i_A 217 PEDVAYAVAFLASNNAS---YITGQTLHVNGGML 247 (249)
T ss_dssp HHHHHHHHHHHHSGGGT---TCCSCEEEESTTSS
T ss_pred HHHHHHHHHHHcCCccC---CccCcEEEECCCEe
Confidence 99999999999876532 24569999998753
|
| >3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, 3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus thuringiensis serovar kurstakorganism_taxid} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.91 E-value=6.2e-24 Score=203.96 Aligned_cols=229 Identities=12% Similarity=0.058 Sum_probs=166.2
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhc--cCCeEEEEecCCCHHHHHHhhccC--
Q 012176 117 NGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQ--KHQVFIVEGDLNDAPLLTKLFDVV-- 192 (469)
Q Consensus 117 ~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~--~~~v~~v~~Dl~d~~~l~~~~~~~-- 192 (469)
.+|+|+||||+|+||++++++|+++|++|++++|... ........... ..++.++.+|++|+++++++++..
T Consensus 6 ~~k~vlVTGas~gIG~~~a~~l~~~G~~v~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~ 81 (264)
T 3i4f_A 6 FVRHALITAGTKGLGKQVTEKLLAKGYSVTVTYHSDT----TAMETMKETYKDVEERLQFVQADVTKKEDLHKIVEEAMS 81 (264)
T ss_dssp CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCH----HHHHHHHHHTGGGGGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred ccCEEEEeCCCchhHHHHHHHHHHCCCEEEEEcCCCh----HHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHH
Confidence 4689999999999999999999999999999988543 11111112111 247999999999999999998754
Q ss_pred ---CccEEEEcccc--cC----hhhhccChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEEcCccccCCCCCCCCCC
Q 012176 193 ---PFTHVLHLAAQ--AG----VRYAMQNPQSYVASNIAGFVNLLEVC----KSVNPQPSIVWASSSSVYGLNTQVPFSE 259 (469)
Q Consensus 193 ---~~d~Vih~Aa~--~~----~~~~~~~~~~~~~~Nv~~~~~ll~aa----~~~~~~~~~V~~SS~~vyg~~~~~~~~E 259 (469)
++|+||||||. .. .....++.+..+++|+.++.++++++ ++.+.. +||++||.+.++...
T Consensus 82 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g-~iv~iss~~~~~~~~------ 154 (264)
T 3i4f_A 82 HFGKIDFLINNAGPYVFERKKLVDYEEDEWNEMIQGNLTAVFHLLKLVVPVMRKQNFG-RIINYGFQGADSAPG------ 154 (264)
T ss_dssp HHSCCCEEECCCCCCCCSCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE-EEEEECCTTGGGCCC------
T ss_pred HhCCCCEEEECCcccccCCCccccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCC-eEEEEeechhcccCC------
Confidence 67999999993 21 12234456788999999999999987 555544 999999985543221
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcce
Q 012176 260 SHRTDQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVA 336 (469)
Q Consensus 260 ~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 336 (469)
..+...|+.+|.+.+.+++.++.+ .|+++++|+||.|+++..... ...+...... ....
T Consensus 155 ----~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~--~~~~~~~~~~------------~~p~ 216 (264)
T 3i4f_A 155 ----WIYRSAFAAAKVGLVSLTKTVAYEEAEYGITANMVCPGDIIGEMKEAT--IQEARQLKEH------------NTPI 216 (264)
T ss_dssp ----CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCCCGGGGSCC--HHHHHHC-------------------
T ss_pred ----CCCCchhHHHHHHHHHHHHHHHHHhhhcCcEEEEEccCCccCccchhc--cHHHHHHHhh------------cCCC
Confidence 134578999999999999999877 589999999999999865432 2222221111 1222
Q ss_pred EecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCCccc
Q 012176 337 RDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTSPVP 377 (469)
Q Consensus 337 ~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~~vt 377 (469)
..+.+++|+|++++.++..... ...|+++++.+|-...
T Consensus 217 ~r~~~~~dva~~v~~l~s~~~~---~itG~~i~vdGG~~~~ 254 (264)
T 3i4f_A 217 GRSGTGEDIARTISFLCEDDSD---MITGTIIEVTGAVDVI 254 (264)
T ss_dssp -CCCCHHHHHHHHHHHHSGGGT---TCCSCEEEESCSCCCC
T ss_pred CCCcCHHHHHHHHHHHcCcccC---CCCCcEEEEcCceeec
Confidence 3578899999999999875432 2456999999876543
|
| >2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent enoyl-ACP reductase, FABI, aquifex A VF5, structural genomics, PSI; 2.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.91 E-value=2.3e-23 Score=202.49 Aligned_cols=228 Identities=12% Similarity=0.045 Sum_probs=167.3
Q ss_pred CCCCEEEEEcCC--ChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccC-
Q 012176 116 PNGMTVLVTGAA--GFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV- 192 (469)
Q Consensus 116 ~~~~~VlVtGat--G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~- 192 (469)
.++|+|+||||+ |+||++++++|+++|++|++++|+.. .......... ...++.++.+|++|+++++++++.+
T Consensus 19 l~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~~-~~~~~~~l~~---~~~~~~~~~~Dl~~~~~v~~~~~~~~ 94 (285)
T 2p91_A 19 LEGKRALITGVANERSIAYGIAKSFHREGAQLAFTYATPK-LEKRVREIAK---GFGSDLVVKCDVSLDEDIKNLKKFLE 94 (285)
T ss_dssp TTTCEEEECCCSSTTSHHHHHHHHHHHTTCEEEEEESSGG-GHHHHHHHHH---HTTCCCEEECCTTCHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCCHH-HHHHHHHHHH---hcCCeEEEEcCCCCHHHHHHHHHHHH
Confidence 567899999999 99999999999999999999999642 1111111111 1124788999999999999888754
Q ss_pred ----CccEEEEcccccCh--------hhhccChHHHHHHHHHHHHHHHHHHHhcCC--CCeEEEEcCccccCCCCCCCCC
Q 012176 193 ----PFTHVLHLAAQAGV--------RYAMQNPQSYVASNIAGFVNLLEVCKSVNP--QPSIVWASSSSVYGLNTQVPFS 258 (469)
Q Consensus 193 ----~~d~Vih~Aa~~~~--------~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~--~~~~V~~SS~~vyg~~~~~~~~ 258 (469)
++|+||||||.... ....++.+..+++|+.++.++++++..... .++||++||.+.+.+.
T Consensus 95 ~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~g~iv~isS~~~~~~~------ 168 (285)
T 2p91_A 95 ENWGSLDIIVHSIAYAPKEEFKGGVIDTSREGFKIAMDISVYSLIALTRELLPLMEGRNGAIVTLSYYGAEKVV------ 168 (285)
T ss_dssp HHTSCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGGTTSCCEEEEEECGGGTSBC------
T ss_pred HHcCCCCEEEECCCCCCcccCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCEEEEEccchhccCC------
Confidence 67999999997542 223445567999999999999999876532 2499999997766432
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcc
Q 012176 259 ESHRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREV 335 (469)
Q Consensus 259 E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 335 (469)
.+...|+.+|.+.+.+++.++.++ |+++++|+||.|+++..........+...+....++
T Consensus 169 ------~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~p~----------- 231 (285)
T 2p91_A 169 ------PHYNVMGIAKAALESTVRYLAYDIAKHGHRINAISAGPVKTLAAYSITGFHLLMEHTTKVNPF----------- 231 (285)
T ss_dssp ------TTTTHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCCCCSCC--CTTHHHHHHHHHHHSTT-----------
T ss_pred ------CCccHHHHHHHHHHHHHHHHHHHhcccCcEEEEEEeCcccCchhhcccchHHHHHHHHhcCCC-----------
Confidence 345689999999999999998775 899999999999998654322223333333332222
Q ss_pred eEecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCC
Q 012176 336 ARDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTS 374 (469)
Q Consensus 336 ~~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~ 374 (469)
..+.+++|+|++++.++..... ...|++|++.++.
T Consensus 232 -~~~~~~~dva~~~~~l~s~~~~---~~tG~~~~vdgg~ 266 (285)
T 2p91_A 232 -GKPITIEDVGDTAVFLCSDWAR---AITGEVVHVDNGY 266 (285)
T ss_dssp -SSCCCHHHHHHHHHHHTSGGGT---TCCSCEEEESTTG
T ss_pred -CCCcCHHHHHHHHHHHcCCccc---CCCCCEEEECCCc
Confidence 1356799999999998864321 2356899998875
|
| >2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin, rossman fold, chorismate metabolism, short-CHA oxidoreductase, tetramer; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.91 E-value=2.5e-23 Score=198.31 Aligned_cols=226 Identities=16% Similarity=0.085 Sum_probs=155.8
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccC---
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~--- 192 (469)
.++|+|+||||+|+||++++++|+++|++|++++|+.+. ...++..+.+|++|+++++++++.+
T Consensus 5 l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~-------------~~~~~~~~~~D~~d~~~~~~~~~~~~~~ 71 (250)
T 2fwm_X 5 FSGKNVWVTGAGKGIGYATALAFVEAGAKVTGFDQAFTQ-------------EQYPFATEVMDVADAAQVAQVCQRLLAE 71 (250)
T ss_dssp CTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCCCS-------------SCCSSEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCchhh-------------hcCCceEEEcCCCCHHHHHHHHHHHHHH
Confidence 567899999999999999999999999999999996541 1124888999999999999888743
Q ss_pred --CccEEEEcccccChh----hhccChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEEcCccccCCCCCCCCCCCCC
Q 012176 193 --PFTHVLHLAAQAGVR----YAMQNPQSYVASNIAGFVNLLEVC----KSVNPQPSIVWASSSSVYGLNTQVPFSESHR 262 (469)
Q Consensus 193 --~~d~Vih~Aa~~~~~----~~~~~~~~~~~~Nv~~~~~ll~aa----~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~ 262 (469)
++|+||||||..... ...++++..+++|+.++.++++++ ++.+.. +||++||...+.+.
T Consensus 72 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g-~iv~isS~~~~~~~---------- 140 (250)
T 2fwm_X 72 TERLDALVNAAGILRMGATDQLSKEDWQQTFAVNVGGAFNLFQQTMNQFRRQRGG-AIVTVASDAAHTPR---------- 140 (250)
T ss_dssp CSCCCEEEECCCCCCCCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCC-EEEEECCGGGTSCC----------
T ss_pred cCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhcCCC-EEEEECchhhCCCC----------
Confidence 679999999974321 234556789999999999999987 444544 99999998876422
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCCCCChHHHHHH-HHHcCCceEEEeeCCCCcceEe
Q 012176 263 TDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTK-DILQGKTIDVYKTQDDREVARD 338 (469)
Q Consensus 263 ~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~ 338 (469)
.+...|+.+|.+.|.+++.++.++ |+++++||||.|+++..........+.. .+..... .+ ........
T Consensus 141 --~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~--~~---~~~~p~~~ 213 (250)
T 2fwm_X 141 --IGMSAYGASKAALKSLALSVGLELAGSGVRCNVVSPGSTDTDMQRTLWVSDDAEEQRIRGFGE--QF---KLGIPLGK 213 (250)
T ss_dssp --TTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCC---------------------------------------
T ss_pred --CCCchHHHHHHHHHHHHHHHHHHhCccCCEEEEEECCcccCccccccccChhHHHHHHhhhhh--cc---cccCCCCC
Confidence 345789999999999999998774 8999999999999985332100000000 0100000 00 00011234
Q ss_pred cccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCCc
Q 012176 339 FTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTSP 375 (469)
Q Consensus 339 ~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~~ 375 (469)
+.+++|+|++++.++..+.. ...|+++++.++..
T Consensus 214 ~~~p~dvA~~v~~l~s~~~~---~~tG~~i~vdGG~~ 247 (250)
T 2fwm_X 214 IARPQEIANTILFLASDLAS---HITLQDIVVDGGST 247 (250)
T ss_dssp --CHHHHHHHHHHHHSGGGT---TCCSCEEEESTTTT
T ss_pred CcCHHHHHHHHHHHhCcccc---CCCCCEEEECCCcc
Confidence 78899999999998865421 24569999988753
|
| >3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.4e-23 Score=201.32 Aligned_cols=221 Identities=15% Similarity=0.117 Sum_probs=160.1
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccC--
Q 012176 115 RPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV-- 192 (469)
Q Consensus 115 ~~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~-- 192 (469)
..++|+||||||+|+||++++++|+++|++|++++|+.+.. ... +...++.++.+|++|+++++++++..
T Consensus 24 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~----~~~----~~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 95 (260)
T 3gem_A 24 TLSSAPILITGASQRVGLHCALRLLEHGHRVIISYRTEHAS----VTE----LRQAGAVALYGDFSCETGIMAFIDLLKT 95 (260)
T ss_dssp ---CCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESSCCHH----HHH----HHHHTCEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCChHHH----HHH----HHhcCCeEEECCCCCHHHHHHHHHHHHH
Confidence 36788999999999999999999999999999999976421 111 11225889999999999999888754
Q ss_pred ---CccEEEEcccccChh---hhccChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEEcCccccCCCCCCCCCCCCC
Q 012176 193 ---PFTHVLHLAAQAGVR---YAMQNPQSYVASNIAGFVNLLEVCKS----VNPQPSIVWASSSSVYGLNTQVPFSESHR 262 (469)
Q Consensus 193 ---~~d~Vih~Aa~~~~~---~~~~~~~~~~~~Nv~~~~~ll~aa~~----~~~~~~~V~~SS~~vyg~~~~~~~~E~~~ 262 (469)
++|+||||||..... ...++.+..+++|+.++.++++++.. .+. ++||++||...+.+.
T Consensus 96 ~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~~-g~iv~isS~~~~~~~---------- 164 (260)
T 3gem_A 96 QTSSLRAVVHNASEWLAETPGEEADNFTRMFSVHMLAPYLINLHCEPLLTASEV-ADIVHISDDVTRKGS---------- 164 (260)
T ss_dssp HCSCCSEEEECCCCCCCCCTTCHHHHHHHHHHHHTHHHHHHHHHHHHHHHTSSS-CEEEEECCGGGGTCC----------
T ss_pred hcCCCCEEEECCCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-cEEEEECChhhcCCC----------
Confidence 679999999974332 23344567999999999999998753 343 499999998776432
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHh--CCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceEecc
Q 012176 263 TDQPASLYAATKKAGEEIAHTYNHIY--GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFT 340 (469)
Q Consensus 263 ~~~p~~~Y~~sK~~~E~~~~~~~~~~--gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v 340 (469)
.+...|+.+|.+.+.+++.++.++ ++++++|+||.|.++..... .+...+....++ ..+.
T Consensus 165 --~~~~~Y~asKaa~~~l~~~la~e~~~~Irvn~v~PG~v~t~~~~~~----~~~~~~~~~~p~------------~r~~ 226 (260)
T 3gem_A 165 --SKHIAYCATKAGLESLTLSFAARFAPLVKVNGIAPALLMFQPKDDA----AYRANALAKSAL------------GIEP 226 (260)
T ss_dssp --SSCHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECTTCC-------------------CCS------------CCCC
T ss_pred --CCcHhHHHHHHHHHHHHHHHHHHHCCCCEEEEEeecccccCCCCCH----HHHHHHHhcCCC------------CCCC
Confidence 345789999999999999999886 49999999999988743321 122222222222 2345
Q ss_pred cHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCCccc
Q 012176 341 YIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTSPVP 377 (469)
Q Consensus 341 ~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~~vt 377 (469)
.++|+|++++.+++.. ...|++|++.+|..++
T Consensus 227 ~~edva~~v~~L~~~~-----~itG~~i~vdGG~~~~ 258 (260)
T 3gem_A 227 GAEVIYQSLRYLLDST-----YVTGTTLTVNGGRHVK 258 (260)
T ss_dssp CTHHHHHHHHHHHHCS-----SCCSCEEEESTTTTTC
T ss_pred CHHHHHHHHHHHhhCC-----CCCCCEEEECCCcccC
Confidence 6899999999998543 3556999999987654
|
| >2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=7.1e-24 Score=201.26 Aligned_cols=225 Identities=13% Similarity=0.034 Sum_probs=163.1
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhh--ccCCeEEEEecCCCHHHHHHhhccC-
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLL--QKHQVFIVEGDLNDAPLLTKLFDVV- 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~v~~v~~Dl~d~~~l~~~~~~~- 192 (469)
.++|+|+||||+|+||++++++|+++|++|++++|+.+ .......... ....+.++.+|++|+++++++++..
T Consensus 5 ~~~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~----~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 80 (248)
T 2pnf_A 5 LQGKVSLVTGSTRGIGRAIAEKLASAGSTVIITGTSGE----RAKAVAEEIANKYGVKAHGVEMNLLSEESINKAFEEIY 80 (248)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHH----HHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCChH----HHHHHHHHHHhhcCCceEEEEccCCCHHHHHHHHHHHH
Confidence 56789999999999999999999999999999999532 1111111111 1347899999999999999988743
Q ss_pred ----CccEEEEcccccCh----hhhccChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEEcCccccCCCCCCCCCCC
Q 012176 193 ----PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVC----KSVNPQPSIVWASSSSVYGLNTQVPFSES 260 (469)
Q Consensus 193 ----~~d~Vih~Aa~~~~----~~~~~~~~~~~~~Nv~~~~~ll~aa----~~~~~~~~~V~~SS~~vyg~~~~~~~~E~ 260 (469)
++|+||||||.... ....++++..+++|+.++.++++++ ++.+.. +||++||...+.+.
T Consensus 81 ~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~-~iv~~sS~~~~~~~-------- 151 (248)
T 2pnf_A 81 NLVDGIDILVNNAGITRDKLFLRMSLLDWEEVLKVNLTGTFLVTQNSLRKMIKQRWG-RIVNISSVVGFTGN-------- 151 (248)
T ss_dssp HHSSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHCHHHHHHTCE-EEEEECCHHHHHCC--------
T ss_pred HhcCCCCEEEECCCCCCCCccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCc-EEEEEccHHhcCCC--------
Confidence 56999999997542 1233455678999999997777764 345554 99999997554321
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceE
Q 012176 261 HRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVAR 337 (469)
Q Consensus 261 ~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 337 (469)
.+...|+.+|.+.|.+++.++.++ |++++++|||.++++...... ..+...+....+ ..
T Consensus 152 ----~~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~v~Pg~v~t~~~~~~~--~~~~~~~~~~~~------------~~ 213 (248)
T 2pnf_A 152 ----VGQVNYSTTKAGLIGFTKSLAKELAPRNVLVNAVAPGFIETDMTAVLS--EEIKQKYKEQIP------------LG 213 (248)
T ss_dssp ----TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCGGGGGSC--HHHHHHHHHTCT------------TS
T ss_pred ----CCCchHHHHHHHHHHHHHHHHHHhcccCeEEEEEEeceecCchhhhcc--HHHHHHHHhcCC------------CC
Confidence 235689999999999999988764 899999999999998543211 122222222222 12
Q ss_pred ecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCC
Q 012176 338 DFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTS 374 (469)
Q Consensus 338 ~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~ 374 (469)
.+++++|+|++++.++..... ...|++|++.++.
T Consensus 214 ~~~~~~dva~~~~~l~~~~~~---~~~G~~~~v~gg~ 247 (248)
T 2pnf_A 214 RFGSPEEVANVVLFLCSELAS---YITGEVIHVNGGM 247 (248)
T ss_dssp SCBCHHHHHHHHHHHHSGGGT---TCCSCEEEESTTC
T ss_pred CccCHHHHHHHHHHHhCchhh---cCCCcEEEeCCCc
Confidence 478999999999999865421 2346999998863
|
| >3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=99.91 E-value=2.1e-23 Score=200.27 Aligned_cols=227 Identities=15% Similarity=0.030 Sum_probs=164.3
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccC---
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~--- 192 (469)
.++|+||||||+|+||++++++|+++|++|++++|+.+ ...... ..+. .++.++.+|++|+++++++++.+
T Consensus 10 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~----~~~~~~-~~~~-~~~~~~~~D~~d~~~v~~~~~~~~~~ 83 (263)
T 3ak4_A 10 LSGRKAIVTGGSKGIGAAIARALDKAGATVAIADLDVM----AAQAVV-AGLE-NGGFAVEVDVTKRASVDAAMQKAIDA 83 (263)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH----HHHHHH-HTCT-TCCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHH----HHHHHH-HHHh-cCCeEEEEeCCCHHHHHHHHHHHHHH
Confidence 56799999999999999999999999999999998432 111111 1111 26889999999999999888743
Q ss_pred --CccEEEEcccccChh----hhccChHHHHHHHHHHHHHHHHHHHhc----CCCCeEEEEcCccccCCCCCCCCCCCCC
Q 012176 193 --PFTHVLHLAAQAGVR----YAMQNPQSYVASNIAGFVNLLEVCKSV----NPQPSIVWASSSSVYGLNTQVPFSESHR 262 (469)
Q Consensus 193 --~~d~Vih~Aa~~~~~----~~~~~~~~~~~~Nv~~~~~ll~aa~~~----~~~~~~V~~SS~~vyg~~~~~~~~E~~~ 262 (469)
++|+||||||..... ...++++..+++|+.++.++++++... +..++||++||...+.+.
T Consensus 84 ~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~---------- 153 (263)
T 3ak4_A 84 LGGFDLLCANAGVSTMRPAVDITDEEWDFNFDVNARGVFLANQIACRHFLASNTKGVIVNTASLAAKVGA---------- 153 (263)
T ss_dssp HTCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCEEEEECCGGGTSCC----------
T ss_pred cCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCeEEEEecccccccCC----------
Confidence 579999999974321 233456678999999999999887543 312499999998766422
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCCCCCh----H-----HHHHHHHHcCCceEEEeeC
Q 012176 263 TDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMA----Y-----FFFTKDILQGKTIDVYKTQ 330 (469)
Q Consensus 263 ~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~~~~~----~-----~~~~~~~~~g~~~~~~~~~ 330 (469)
.+...|+.+|.+.|.+++.++.++ |+++++||||.|+++....... . ......+....
T Consensus 154 --~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 223 (263)
T 3ak4_A 154 --PLLAHYSASKFAVFGWTQALAREMAPKNIRVNCVCPGFVKTAMQEREIIWEAELRGMTPEAVRAEYVSLT-------- 223 (263)
T ss_dssp --TTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBTTHHHHHHHHHHHHHHTSCHHHHHHHHHHTC--------
T ss_pred --CCchhHHHHHHHHHHHHHHHHHHHhHcCeEEEEEecccccChhhhhhccccccccccCcHHHHHHHHhcC--------
Confidence 345689999999999999998775 8999999999999873221000 0 11111122211
Q ss_pred CCCcceEecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCCc
Q 012176 331 DDREVARDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTSP 375 (469)
Q Consensus 331 ~~~~~~~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~~ 375 (469)
....+++++|+|++++.++..+.. ...|++|++.++..
T Consensus 224 ----p~~~~~~~~dvA~~v~~l~s~~~~---~~tG~~~~vdgG~~ 261 (263)
T 3ak4_A 224 ----PLGRIEEPEDVADVVVFLASDAAR---FMTGQGINVTGGVR 261 (263)
T ss_dssp ----TTCSCBCHHHHHHHHHHHHSGGGT---TCCSCEEEESSSSS
T ss_pred ----CCCCCcCHHHHHHHHHHHhCcccc---CCCCCEEEECcCEe
Confidence 123588999999999999865421 23568999998753
|
| >1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=6.5e-24 Score=203.31 Aligned_cols=230 Identities=11% Similarity=0.039 Sum_probs=165.3
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhh-ccCCeEEEEecCCCHHHHHHhhccC--
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLL-QKHQVFIVEGDLNDAPLLTKLFDVV-- 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~v~~v~~Dl~d~~~l~~~~~~~-- 192 (469)
.++|+||||||+|+||++++++|+++|++|++++|... ........... ...++.++.+|++|+++++++++..
T Consensus 5 l~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~---~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 81 (261)
T 1gee_A 5 LEGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKE---DEANSVLEEIKKVGGEAIAVKGDVTVESDVINLVQSAIK 81 (261)
T ss_dssp GTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCH---HHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEcCCCh---HHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999998321 11111111111 1346889999999999999888743
Q ss_pred ---CccEEEEcccccCh----hhhccChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEEcCccccCCCCCCCCCCCC
Q 012176 193 ---PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCKS----VNPQPSIVWASSSSVYGLNTQVPFSESH 261 (469)
Q Consensus 193 ---~~d~Vih~Aa~~~~----~~~~~~~~~~~~~Nv~~~~~ll~aa~~----~~~~~~~V~~SS~~vyg~~~~~~~~E~~ 261 (469)
++|+||||||.... ....++++..+++|+.++.++++++.. .+..++||++||...+.+.
T Consensus 82 ~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~iv~isS~~~~~~~--------- 152 (261)
T 1gee_A 82 EFGKLDVMINNAGLENPVSSHEMSLSDWNKVIDTNLTGAFLGSREAIKYFVENDIKGTVINMSSVHEKIPW--------- 152 (261)
T ss_dssp HHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCEEEEECCGGGTSCC---------
T ss_pred HcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCCCEEEEeCCHHhcCCC---------
Confidence 67999999997542 123345567899999999998887654 3312499999998765321
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceEe
Q 012176 262 RTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARD 338 (469)
Q Consensus 262 ~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 338 (469)
.+...|+.+|.+.|.+++.++.++ |+++++||||.|+++..........+...+....+ ...
T Consensus 153 ---~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~------------~~~ 217 (261)
T 1gee_A 153 ---PLFVHYAASKGGMKLMTETLALEYAPKGIRVNNIGPGAINTPINAEKFADPEQRADVESMIP------------MGY 217 (261)
T ss_dssp ---TTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSGGGHHHHHSHHHHHHHHTTCT------------TSS
T ss_pred ---CCccHHHHHHHHHHHHHHHHHHHhcccCeEEEEEeeCCcCCchhhhcccChhHHHHHHhcCC------------CCC
Confidence 356789999999999999988765 89999999999999843210000122223322221 124
Q ss_pred cccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCCc
Q 012176 339 FTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTSP 375 (469)
Q Consensus 339 ~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~~ 375 (469)
+++++|+|++++.++..... ...|+++++.++..
T Consensus 218 ~~~~~dva~~~~~l~~~~~~---~~~G~~~~v~gg~~ 251 (261)
T 1gee_A 218 IGEPEEIAAVAAWLASSEAS---YVTGITLFADGGMT 251 (261)
T ss_dssp CBCHHHHHHHHHHHHSGGGT---TCCSCEEEESTTGG
T ss_pred CcCHHHHHHHHHHHhCcccc---CCCCcEEEEcCCcc
Confidence 78999999999998864321 23468999998764
|
| >3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; 2.06A {Listeria innocua} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.2e-24 Score=200.23 Aligned_cols=192 Identities=14% Similarity=0.148 Sum_probs=150.1
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccC-Ccc
Q 012176 117 NGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV-PFT 195 (469)
Q Consensus 117 ~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~-~~d 195 (469)
++|+|+||||+|+||++++++|+ +|++|++++|... .+.+|++|+++++++++.. ++|
T Consensus 2 ~kM~vlVtGasg~iG~~~~~~l~-~g~~V~~~~r~~~--------------------~~~~D~~~~~~~~~~~~~~~~~d 60 (202)
T 3d7l_A 2 NAMKILLIGASGTLGSAVKERLE-KKAEVITAGRHSG--------------------DVTVDITNIDSIKKMYEQVGKVD 60 (202)
T ss_dssp CSCEEEEETTTSHHHHHHHHHHT-TTSEEEEEESSSS--------------------SEECCTTCHHHHHHHHHHHCCEE
T ss_pred CCcEEEEEcCCcHHHHHHHHHHH-CCCeEEEEecCcc--------------------ceeeecCCHHHHHHHHHHhCCCC
Confidence 34689999999999999999999 9999999999532 4789999999999999874 569
Q ss_pred EEEEcccccChh----hhccChHHHHHHHHHHHHHHHHHHHhcCC-CCeEEEEcCccccCCCCCCCCCCCCCCCCCCChH
Q 012176 196 HVLHLAAQAGVR----YAMQNPQSYVASNIAGFVNLLEVCKSVNP-QPSIVWASSSSVYGLNTQVPFSESHRTDQPASLY 270 (469)
Q Consensus 196 ~Vih~Aa~~~~~----~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~-~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y 270 (469)
+||||||..... ...++.+..+++|+.++.++++++..... .++||++||...+.+. .+...|
T Consensus 61 ~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~iv~~sS~~~~~~~------------~~~~~Y 128 (202)
T 3d7l_A 61 AIVSATGSATFSPLTELTPEKNAVTISSKLGGQINLVLLGIDSLNDKGSFTLTTGIMMEDPI------------VQGASA 128 (202)
T ss_dssp EEEECCCCCCCCCGGGCCHHHHHHHHHTTTHHHHHHHHTTGGGEEEEEEEEEECCGGGTSCC------------TTCHHH
T ss_pred EEEECCCCCCCCChhhCCHHHHHHHHhhccHHHHHHHHHHHHHhccCCEEEEEcchhhcCCC------------CccHHH
Confidence 999999964321 12234457789999999999999887611 1389999998766422 345789
Q ss_pred HHHHHHHHHHHHHHHHHh--CCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceEecccHHHHHHH
Q 012176 271 AATKKAGEEIAHTYNHIY--GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKG 348 (469)
Q Consensus 271 ~~sK~~~E~~~~~~~~~~--gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~~ 348 (469)
+.+|.+.|.+++.++.++ |++++++|||.++++... . + +....+++++++|+|++
T Consensus 129 ~~sK~~~~~~~~~~~~e~~~gi~v~~v~pg~v~~~~~~-----------~--~----------~~~~~~~~~~~~dva~~ 185 (202)
T 3d7l_A 129 AMANGAVTAFAKSAAIEMPRGIRINTVSPNVLEESWDK-----------L--E----------PFFEGFLPVPAAKVARA 185 (202)
T ss_dssp HHHHHHHHHHHHHHTTSCSTTCEEEEEEECCBGGGHHH-----------H--G----------GGSTTCCCBCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccCCeEEEEEecCccCCchhh-----------h--h----------hhccccCCCCHHHHHHH
Confidence 999999999999998764 899999999999997311 1 0 11224578999999999
Q ss_pred HHHHhccCCCCCCCCCceEEEe
Q 012176 349 CVGATGSGGKKRGPAQLRVYNL 370 (469)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~iyni 370 (469)
++.++... ..|++||+
T Consensus 186 ~~~~~~~~------~~G~~~~v 201 (202)
T 3d7l_A 186 FEKSVFGA------QTGESYQV 201 (202)
T ss_dssp HHHHHHSC------CCSCEEEE
T ss_pred HHHhhhcc------ccCceEec
Confidence 99888432 34588887
|
| >3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.91 E-value=8.9e-24 Score=204.18 Aligned_cols=229 Identities=15% Similarity=0.076 Sum_probs=168.2
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhc-cCCeEEEEecCCCHHHHHHhhccC-
Q 012176 115 RPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQ-KHQVFIVEGDLNDAPLLTKLFDVV- 192 (469)
Q Consensus 115 ~~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~v~~v~~Dl~d~~~l~~~~~~~- 192 (469)
..++|+||||||+|+||++++++|+++|++|++++|.. ...+....... ..++.++.+|++|.++++++.+..
T Consensus 28 ~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~-----~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~ 102 (273)
T 3uf0_A 28 SLAGRTAVVTGAGSGIGRAIAHGYARAGAHVLAWGRTD-----GVKEVADEIADGGGSAEAVVADLADLEGAANVAEELA 102 (273)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESST-----HHHHHHHHHHTTTCEEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCHH-----HHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999742 22222222222 347899999999999988875432
Q ss_pred ---CccEEEEcccccChh----hhccChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEEcCccccCCCCCCCCCCCC
Q 012176 193 ---PFTHVLHLAAQAGVR----YAMQNPQSYVASNIAGFVNLLEVCK----SVNPQPSIVWASSSSVYGLNTQVPFSESH 261 (469)
Q Consensus 193 ---~~d~Vih~Aa~~~~~----~~~~~~~~~~~~Nv~~~~~ll~aa~----~~~~~~~~V~~SS~~vyg~~~~~~~~E~~ 261 (469)
++|+||||||..... ...++++..+++|+.++.++++++. +.+.. +||++||...+.+.
T Consensus 103 ~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g-~IV~isS~~~~~~~--------- 172 (273)
T 3uf0_A 103 ATRRVDVLVNNAGIIARAPAEEVSLGRWREVLTVNLDAAWVLSRSFGTAMLAHGSG-RIVTIASMLSFQGG--------- 172 (273)
T ss_dssp HHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE-EEEEECCGGGTSCC---------
T ss_pred hcCCCcEEEECCCCCCCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCC-EEEEEcchHhcCCC---------
Confidence 679999999975432 2344566899999999999999863 34543 99999998776432
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceEe
Q 012176 262 RTDQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARD 338 (469)
Q Consensus 262 ~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 338 (469)
.+...|+.+|.+.+.+++.++.+ +|+++++|+||.|+++..............+....++ ..
T Consensus 173 ---~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~p~------------~r 237 (273)
T 3uf0_A 173 ---RNVAAYAASKHAVVGLTRALASEWAGRGVGVNALAPGYVVTANTAALRADDERAAEITARIPA------------GR 237 (273)
T ss_dssp ---SSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSGGGHHHHTSHHHHHHHHHHSTT------------SS
T ss_pred ---CCChhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEEeCCCcCCchhhcccCHHHHHHHHhcCCC------------CC
Confidence 34578999999999999999987 5899999999999987432100011222333332222 24
Q ss_pred cccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCCcc
Q 012176 339 FTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTSPV 376 (469)
Q Consensus 339 ~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~~v 376 (469)
+..++|+|++++.++..... ...|+++++.+|..+
T Consensus 238 ~~~pedva~~v~~L~s~~a~---~itG~~i~vdGG~~~ 272 (273)
T 3uf0_A 238 WATPEDMVGPAVFLASDAAS---YVHGQVLAVDGGWLA 272 (273)
T ss_dssp CBCGGGGHHHHHHHHSGGGT---TCCSCEEEESTTGGG
T ss_pred CCCHHHHHHHHHHHhCchhc---CCcCCEEEECcCccC
Confidence 67789999999998865422 345699999988644
|
| >3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.91 E-value=1.4e-23 Score=202.04 Aligned_cols=240 Identities=12% Similarity=0.024 Sum_probs=175.3
Q ss_pred CCCCCCEEEEEcCC--ChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhcc
Q 012176 114 RRPNGMTVLVTGAA--GFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDV 191 (469)
Q Consensus 114 ~~~~~~~VlVtGat--G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~ 191 (469)
....+|+||||||+ |+||++++++|+++|++|++++|... ..............+.++.+|++|+++++++++.
T Consensus 10 ~~~~~k~vlITGa~~~~giG~~ia~~l~~~G~~V~~~~r~~~----~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~ 85 (271)
T 3ek2_A 10 GFLDGKRILLTGLLSNRSIAYGIAKACKREGAELAFTYVGDR----FKDRITEFAAEFGSELVFPCDVADDAQIDALFAS 85 (271)
T ss_dssp CTTTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSGG----GHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHH
T ss_pred cccCCCEEEEeCCCCCCcHHHHHHHHHHHcCCCEEEEecchh----hHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHH
Confidence 34788999999999 99999999999999999999998632 1111111111234688999999999999998876
Q ss_pred C-----CccEEEEcccccChh---------hhccChHHHHHHHHHHHHHHHHHHHhcCC-CCeEEEEcCccccCCCCCCC
Q 012176 192 V-----PFTHVLHLAAQAGVR---------YAMQNPQSYVASNIAGFVNLLEVCKSVNP-QPSIVWASSSSVYGLNTQVP 256 (469)
Q Consensus 192 ~-----~~d~Vih~Aa~~~~~---------~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~-~~~~V~~SS~~vyg~~~~~~ 256 (469)
+ ++|+||||||..... ...++.+..+++|+.++.++++++...-. .++||++||.+.+.+.
T Consensus 86 ~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS~~~~~~~---- 161 (271)
T 3ek2_A 86 LKTHWDSLDGLVHSIGFAPREAIAGDFLDGLTRENFRIAHDISAYSFPALAKAALPMLSDDASLLTLSYLGAERAI---- 161 (271)
T ss_dssp HHHHCSCEEEEEECCCCCCGGGGSSCTTTTCCHHHHHHHHHHHTTHHHHHHHHHGGGEEEEEEEEEEECGGGTSBC----
T ss_pred HHHHcCCCCEEEECCccCccccccCccccccCHHHHHHHHhhhHHHHHHHHHHHHHHhccCceEEEEeccccccCC----
Confidence 5 689999999975431 33455668999999999999999876421 2389999998776432
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCC
Q 012176 257 FSESHRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDR 333 (469)
Q Consensus 257 ~~E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 333 (469)
.+...|+.+|.+.+.+++.++.++ |+++++|+||.|..+..........+...+....++
T Consensus 162 --------~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~--------- 224 (271)
T 3ek2_A 162 --------PNYNTMGLAKAALEASVRYLAVSLGAKGVRVNAISAGPIKTLAASGIKSFGKILDFVESNSPL--------- 224 (271)
T ss_dssp --------TTTTHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCC-----CCCHHHHHHHHHHHHHSTT---------
T ss_pred --------CCccchhHHHHHHHHHHHHHHHHHHhcCcEEEEEecCcccchhhhcccchHHHHHHHHhcCCc---------
Confidence 346789999999999999998775 899999999999987655433333444444443332
Q ss_pred cceEecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCCcccHHHHHHH
Q 012176 334 EVARDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSI 384 (469)
Q Consensus 334 ~~~~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~~vt~~el~~~ 384 (469)
..+..++|+|++++.++..... ...|+++++.+|..+++.++++.
T Consensus 225 ---~~~~~pedva~~i~~l~s~~~~---~~tG~~i~vdgG~~~~~~~~~~~ 269 (271)
T 3ek2_A 225 ---KRNVTIEQVGNAGAFLLSDLAS---GVTAEVMHVDSGFNAVVGGMAGL 269 (271)
T ss_dssp ---SSCCCHHHHHHHHHHHHSGGGT---TCCSEEEEESTTGGGBCCCC---
T ss_pred ---CCCCCHHHHHHHHHHHcCcccC---CeeeeEEEECCCeeeehhhhhhc
Confidence 2356799999999999875422 34569999999998887776543
|
| >3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=99.91 E-value=4e-24 Score=203.95 Aligned_cols=225 Identities=15% Similarity=0.157 Sum_probs=140.3
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhh-ccCCeEEEEecCCCHHHHHHhhccC--
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLL-QKHQVFIVEGDLNDAPLLTKLFDVV-- 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~v~~v~~Dl~d~~~l~~~~~~~-- 192 (469)
.++|+||||||+|+||++++++|+++|++|++++|+.+ .......... ....+.++.+|++|+++++++++..
T Consensus 7 ~~~k~vlITGas~giG~~~a~~l~~~G~~V~~~~r~~~----~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 82 (253)
T 3qiv_A 7 FENKVGIVTGSGGGIGQAYAEALAREGAAVVVADINAE----AAEAVAKQIVADGGTAISVAVDVSDPESAKAMADRTLA 82 (253)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH----HHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHH----HHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999543 2222222221 1347889999999999999988754
Q ss_pred ---CccEEEEcccccCh-------hhhccChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEEcCccccCCCCCCCCC
Q 012176 193 ---PFTHVLHLAAQAGV-------RYAMQNPQSYVASNIAGFVNLLEVC----KSVNPQPSIVWASSSSVYGLNTQVPFS 258 (469)
Q Consensus 193 ---~~d~Vih~Aa~~~~-------~~~~~~~~~~~~~Nv~~~~~ll~aa----~~~~~~~~~V~~SS~~vyg~~~~~~~~ 258 (469)
++|+||||||..+. ....++++..+++|+.++.++++++ ++.+.. +||++||...|.
T Consensus 83 ~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g-~iv~isS~~~~~-------- 153 (253)
T 3qiv_A 83 EFGGIDYLVNNAAIFGGMKLDFLLTIDPEYYKKFMSVNLDGALWCTRAVYKKMTKRGGG-AIVNQSSTAAWL-------- 153 (253)
T ss_dssp HHSCCCEEEECCCCCCGGGGGCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCE-EEEEECC-------------
T ss_pred HcCCCCEEEECCCcCCCCCCcccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCC-EEEEECCccccC--------
Confidence 67999999997421 1233455678999999977776664 444543 899999988762
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcc
Q 012176 259 ESHRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREV 335 (469)
Q Consensus 259 E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 335 (469)
+...|+.+|.+.|.+++.++.++ |+++++|+||.|+++...... ...+...+.++.++
T Consensus 154 -------~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~-~~~~~~~~~~~~~~----------- 214 (253)
T 3qiv_A 154 -------YSNYYGLAKVGINGLTQQLSRELGGRNIRINAIAPGPIDTEANRTTT-PKEMVDDIVKGLPL----------- 214 (253)
T ss_dssp -------------CCHHHHHHHHHHHHHHTTTTTEEEEEEEC--------------------------------------
T ss_pred -------CCchhHHHHHHHHHHHHHHHHHHhhcCeEEEEEEecCCcccchhhcC-cHHHHHHHhccCCC-----------
Confidence 33569999999999999999886 799999999999998543211 11222333333222
Q ss_pred eEecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCCcc
Q 012176 336 ARDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTSPV 376 (469)
Q Consensus 336 ~~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~~v 376 (469)
..+..++|+|++++.++..... ...|++|++.+|..+
T Consensus 215 -~~~~~~~dva~~~~~l~s~~~~---~~tG~~~~vdgG~~~ 251 (253)
T 3qiv_A 215 -SRMGTPDDLVGMCLFLLSDEAS---WITGQIFNVDGGQII 251 (253)
T ss_dssp ------CCHHHHHHHHHHSGGGT---TCCSCEEEC------
T ss_pred -CCCCCHHHHHHHHHHHcCcccc---CCCCCEEEECCCeec
Confidence 3355689999999998865422 235699999998754
|
| >3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.91 E-value=2.1e-23 Score=198.31 Aligned_cols=227 Identities=13% Similarity=0.062 Sum_probs=169.4
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhc-cCCeEEEEecCCCHHHHHHhhccC--
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQ-KHQVFIVEGDLNDAPLLTKLFDVV-- 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~v~~v~~Dl~d~~~l~~~~~~~-- 192 (469)
.++|+|+||||+|+||++++++|+++|++|++++|+.+ ........... ..++.++.+|++|+++++++++..
T Consensus 3 l~~k~vlITGas~gIG~~~a~~l~~~G~~v~~~~r~~~----~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 78 (247)
T 3lyl_A 3 LNEKVALVTGASRGIGFEVAHALASKGATVVGTATSQA----SAEKFENSMKEKGFKARGLVLNISDIESIQNFFAEIKA 78 (247)
T ss_dssp TTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHH----HHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHH----HHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHH
Confidence 56789999999999999999999999999999999543 11221121111 347899999999999999888764
Q ss_pred ---CccEEEEcccccCh----hhhccChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEEcCccccCCCCCCCCCCCC
Q 012176 193 ---PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCKS----VNPQPSIVWASSSSVYGLNTQVPFSESH 261 (469)
Q Consensus 193 ---~~d~Vih~Aa~~~~----~~~~~~~~~~~~~Nv~~~~~ll~aa~~----~~~~~~~V~~SS~~vyg~~~~~~~~E~~ 261 (469)
++|+||||||.... ....++.+..+++|+.++.++++++.. .+. ++||++||...+.+.
T Consensus 79 ~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~-g~iv~isS~~~~~~~--------- 148 (247)
T 3lyl_A 79 ENLAIDILVNNAGITRDNLMMRMSEDEWQSVINTNLSSIFRMSKECVRGMMKKRW-GRIISIGSVVGSAGN--------- 148 (247)
T ss_dssp TTCCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-EEEEEECCTHHHHCC---------
T ss_pred HcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCC-eEEEEEcchhhccCC---------
Confidence 68999999997543 223455668999999999999988643 343 389999997765422
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceEe
Q 012176 262 RTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARD 338 (469)
Q Consensus 262 ~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 338 (469)
.+...|+.+|.+.+.+++.++.++ |+++++|+||.|.++...... ......+....+ ...
T Consensus 149 ---~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~--~~~~~~~~~~~~------------~~~ 211 (247)
T 3lyl_A 149 ---PGQTNYCAAKAGVIGFSKSLAYEVASRNITVNVVAPGFIATDMTDKLT--DEQKSFIATKIP------------SGQ 211 (247)
T ss_dssp ---TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTTTTSC--HHHHHHHHTTST------------TCC
T ss_pred ---CCcHHHHHHHHHHHHHHHHHHHHHHHcCeEEEEEeeCcEecccchhcc--HHHHHHHhhcCC------------CCC
Confidence 345789999999999999998764 899999999999988554321 222222322222 245
Q ss_pred cccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCCcc
Q 012176 339 FTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTSPV 376 (469)
Q Consensus 339 ~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~~v 376 (469)
+.+++|+|++++.++..... ...|++|++.+|..+
T Consensus 212 ~~~~~dva~~i~~l~s~~~~---~~tG~~i~vdgG~~~ 246 (247)
T 3lyl_A 212 IGEPKDIAAAVAFLASEEAK---YITGQTLHVNGGMYM 246 (247)
T ss_dssp CBCHHHHHHHHHHHHSGGGT---TCCSCEEEESTTSSC
T ss_pred CcCHHHHHHHHHHHhCCCcC---CccCCEEEECCCEec
Confidence 78999999999998865432 345699999988644
|
| >2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics, southeast collaboratory for structural genomics, secsg, PSI; 1.90A {Clostridium thermocellum} | Back alignment and structure |
|---|
Probab=99.91 E-value=2.7e-23 Score=197.26 Aligned_cols=224 Identities=13% Similarity=0.099 Sum_probs=154.7
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEE-eCCCCCCChhHHHHHHHhh-ccCCeEEEEecCCCHHHHHHhhccC-
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGL-DNFNSYYDPSLKRARQKLL-QKHQVFIVEGDLNDAPLLTKLFDVV- 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~-~r~~~~~~~~~~~~~~~~~-~~~~v~~v~~Dl~d~~~l~~~~~~~- 192 (469)
.++|+|+||||+|+||++++++|+++|++|+++ .|... .......... ...++.++.+|++|+++++++++..
T Consensus 3 l~~~~vlItGasggiG~~~a~~l~~~G~~V~~~~~r~~~----~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 78 (247)
T 2hq1_A 3 LKGKTAIVTGSSRGLGKAIAWKLGNMGANIVLNGSPAST----SLDATAEEFKAAGINVVVAKGDVKNPEDVENMVKTAM 78 (247)
T ss_dssp TTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEECTTCS----HHHHHHHHHHHTTCCEEEEESCTTSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEcCcCHH----HHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHH
Confidence 467899999999999999999999999999999 45332 1222111111 1347899999999999999888743
Q ss_pred ----CccEEEEcccccCh----hhhccChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEEcCcc-ccCCCCCCCCCC
Q 012176 193 ----PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCKS----VNPQPSIVWASSSS-VYGLNTQVPFSE 259 (469)
Q Consensus 193 ----~~d~Vih~Aa~~~~----~~~~~~~~~~~~~Nv~~~~~ll~aa~~----~~~~~~~V~~SS~~-vyg~~~~~~~~E 259 (469)
++|+||||||.... ....++++..+++|+.++.++++++.. .+.. +||++||.. .|+.
T Consensus 79 ~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~-~iv~~sS~~~~~~~-------- 149 (247)
T 2hq1_A 79 DAFGRIDILVNNAGITRDTLMLKMSEKDWDDVLNTNLKSAYLCTKAVSKIMLKQKSG-KIINITSIAGIIGN-------- 149 (247)
T ss_dssp HHHSCCCEEEECC---------------CHHHHHHTHHHHHHHHHHHHHHHHHHTCE-EEEEECC---------------
T ss_pred HhcCCCCEEEECCCCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCc-EEEEEcChhhccCC--------
Confidence 67999999997532 234566778999999999998887653 4544 999999974 4432
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcce
Q 012176 260 SHRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVA 336 (469)
Q Consensus 260 ~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 336 (469)
.+...|+.+|.+.|.+++.++.++ |+++++++||.+.++..... ...+...+..+.+ .
T Consensus 150 -----~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~--~~~~~~~~~~~~~------------~ 210 (247)
T 2hq1_A 150 -----AGQANYAASKAGLIGFTKSIAKEFAAKGIYCNAVAPGIIKTDMTDVL--PDKVKEMYLNNIP------------L 210 (247)
T ss_dssp -------CHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHTS--CHHHHHHHHTTST------------T
T ss_pred -----CCCcHhHHHHHHHHHHHHHHHHHHHHcCcEEEEEEEEEEeccchhhc--chHHHHHHHhhCC------------C
Confidence 235789999999999999998775 89999999999987632110 1122233333322 1
Q ss_pred EecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCC
Q 012176 337 RDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTS 374 (469)
Q Consensus 337 ~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~ 374 (469)
..+++++|+|++++.++..+.. ...|++||+.++.
T Consensus 211 ~~~~~~~dva~~~~~l~~~~~~---~~~G~~~~v~gG~ 245 (247)
T 2hq1_A 211 KRFGTPEEVANVVGFLASDDSN---YITGQVINIDGGL 245 (247)
T ss_dssp SSCBCHHHHHHHHHHHHSGGGT---TCCSCEEEESTTC
T ss_pred CCCCCHHHHHHHHHHHcCcccc---cccCcEEEeCCCc
Confidence 3478999999999988865421 2346899998875
|
| >1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.91 E-value=2e-23 Score=201.61 Aligned_cols=228 Identities=13% Similarity=0.060 Sum_probs=162.9
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhc-cCCeEEEEecCCCHHHHHHhhcc---
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQ-KHQVFIVEGDLNDAPLLTKLFDV--- 191 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~v~~v~~Dl~d~~~l~~~~~~--- 191 (469)
.++|+|+||||+|+||++++++|+++|++|++++|+.+ ........... ..++.++.+|++|+++++++++.
T Consensus 19 l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~----~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 94 (273)
T 1ae1_A 19 LKGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEK----ELDECLEIWREKGLNVEGSVCDLLSRTERDKLMQTVAH 94 (273)
T ss_dssp CTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHH----HHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCcchHHHHHHHHHHHCCCEEEEEeCCHH----HHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHH
Confidence 56899999999999999999999999999999999542 12221122111 34789999999999999888853
Q ss_pred ---CCccEEEEcccccChh----hhccChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEEcCccccCCCCCCCCCCC
Q 012176 192 ---VPFTHVLHLAAQAGVR----YAMQNPQSYVASNIAGFVNLLEVCK----SVNPQPSIVWASSSSVYGLNTQVPFSES 260 (469)
Q Consensus 192 ---~~~d~Vih~Aa~~~~~----~~~~~~~~~~~~Nv~~~~~ll~aa~----~~~~~~~~V~~SS~~vyg~~~~~~~~E~ 260 (469)
-++|+||||||..... ...++.+..+++|+.++.++++++. +.+.. +||++||...+.+.
T Consensus 95 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g-~iv~isS~~~~~~~-------- 165 (273)
T 1ae1_A 95 VFDGKLNILVNNAGVVIHKEAKDFTEKDYNIIMGTNFEAAYHLSQIAYPLLKASQNG-NVIFLSSIAGFSAL-------- 165 (273)
T ss_dssp HTTSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSE-EEEEECCGGGTSCC--------
T ss_pred HcCCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCc-EEEEEcCHhhcCCC--------
Confidence 2579999999974321 2334566789999999999999874 34443 99999998887532
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCCCCCh----HHHHHHHHHcCCceEEEeeCCCC
Q 012176 261 HRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMA----YFFFTKDILQGKTIDVYKTQDDR 333 (469)
Q Consensus 261 ~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~~~~~----~~~~~~~~~~g~~~~~~~~~~~~ 333 (469)
.+...|+.+|.+.+.+++.++.++ |+++++|+||.|+++....... ...+...+....++
T Consensus 166 ----~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~p~--------- 232 (273)
T 1ae1_A 166 ----PSVSLYSASKGAINQMTKSLACEWAKDNIRVNSVAPGVILTPLVETAIKKNPHQKEEIDNFIVKTPM--------- 232 (273)
T ss_dssp ----TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBC-------------CHHHHHHHHHHSTT---------
T ss_pred ----CCcchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEEeCCCcCchhhhhhhcccCcHHHHHHHHhcCCC---------
Confidence 345789999999999999998775 8999999999999985332100 01122222222221
Q ss_pred cceEecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCCc
Q 012176 334 EVARDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTSP 375 (469)
Q Consensus 334 ~~~~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~~ 375 (469)
..+.+++|+|++++.++..... ...|+++++.+|..
T Consensus 233 ---~r~~~p~dvA~~v~~l~s~~~~---~~tG~~i~vdGG~~ 268 (273)
T 1ae1_A 233 ---GRAGKPQEVSALIAFLCFPAAS---YITGQIIWADGGFT 268 (273)
T ss_dssp ---CSCBCHHHHHHHHHHHHSGGGT---TCCSCEEEESTTGG
T ss_pred ---CCCcCHHHHHHHHHHHhCcccc---CcCCCEEEECCCcc
Confidence 2367899999999988864321 23569999998753
|
| >3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=7.1e-23 Score=200.19 Aligned_cols=233 Identities=14% Similarity=0.038 Sum_probs=174.0
Q ss_pred CCCCCCEEEEEcCCC--hhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhcc
Q 012176 114 RRPNGMTVLVTGAAG--FVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDV 191 (469)
Q Consensus 114 ~~~~~~~VlVtGatG--~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~ 191 (469)
...++|+||||||+| +||++++++|+++|++|++++|+.. ..............+.++.+|++|+++++++++.
T Consensus 26 ~~l~~k~vlVTGasg~~GIG~~ia~~la~~G~~V~~~~r~~~----~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~ 101 (296)
T 3k31_A 26 MLMEGKKGVIIGVANDKSLAWGIAKAVCAQGAEVALTYLSET----FKKRVDPLAESLGVKLTVPCDVSDAESVDNMFKV 101 (296)
T ss_dssp CTTTTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGG----GHHHHHHHHHHHTCCEEEECCTTCHHHHHHHHHH
T ss_pred hccCCCEEEEEeCCCCCCHHHHHHHHHHHCCCEEEEEeCChH----HHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHH
Confidence 346789999999997 9999999999999999999999642 1111111111223578999999999999999876
Q ss_pred C-----CccEEEEcccccCh--------hhhccChHHHHHHHHHHHHHHHHHHHhcCC-CCeEEEEcCccccCCCCCCCC
Q 012176 192 V-----PFTHVLHLAAQAGV--------RYAMQNPQSYVASNIAGFVNLLEVCKSVNP-QPSIVWASSSSVYGLNTQVPF 257 (469)
Q Consensus 192 ~-----~~d~Vih~Aa~~~~--------~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~-~~~~V~~SS~~vyg~~~~~~~ 257 (469)
+ ++|+||||||.... ....++++..+++|+.++.++++++..... .++||++||.+.+...
T Consensus 102 ~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~IV~isS~~~~~~~----- 176 (296)
T 3k31_A 102 LAEEWGSLDFVVHAVAFSDKNELKGRYVDTSLGNFLTSMHISCYSFTYIASKAEPLMTNGGSILTLSYYGAEKVV----- 176 (296)
T ss_dssp HHHHHSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEECGGGTSCC-----
T ss_pred HHHHcCCCCEEEECCCcCCcccccCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCEEEEEEehhhccCC-----
Confidence 5 68999999997643 233455678999999999999999876432 2489999998776432
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCc
Q 012176 258 SESHRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDRE 334 (469)
Q Consensus 258 ~E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 334 (469)
.....|+.+|.+.+.+++.++.++ |+++++|+||.|.++..........+........++
T Consensus 177 -------~~~~~Y~asKaal~~l~~~la~e~~~~gIrvn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~p~---------- 239 (296)
T 3k31_A 177 -------PHYNVMGVCKAALEASVKYLAVDLGKQQIRVNAISAGPVRTLASSGISDFHYILTWNKYNSPL---------- 239 (296)
T ss_dssp -------TTTTHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECCCCCSSCCSCHHHHHHHHHHHHHSTT----------
T ss_pred -------CCchhhHHHHHHHHHHHHHHHHHHhhcCcEEEEEEECCCcCchhhcccchHHHHHHHHhcCCC----------
Confidence 345789999999999999998775 899999999999998654332223333333333332
Q ss_pred ceEecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCCccc
Q 012176 335 VARDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTSPVP 377 (469)
Q Consensus 335 ~~~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~~vt 377 (469)
..+..++|+|++++.++..... -..|+++++.+|..+.
T Consensus 240 --~r~~~pedvA~~v~fL~s~~a~---~itG~~i~vdGG~~~~ 277 (296)
T 3k31_A 240 --RRNTTLDDVGGAALYLLSDLGR---GTTGETVHVDCGYHVV 277 (296)
T ss_dssp --SSCCCHHHHHHHHHHHHSGGGT---TCCSCEEEESTTGGGC
T ss_pred --CCCCCHHHHHHHHHHHcCCccC---CccCCEEEECCCcccc
Confidence 2356789999999999875422 3456999999986543
|
| >4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A | Back alignment and structure |
|---|
Probab=99.91 E-value=1.7e-23 Score=200.13 Aligned_cols=233 Identities=15% Similarity=0.061 Sum_probs=172.9
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccC--
Q 012176 115 RPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV-- 192 (469)
Q Consensus 115 ~~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~-- 192 (469)
..++|+++||||+|+||++++++|+++|++|++++|+.+ ......... ..++.++.+|++|+++++++++..
T Consensus 5 ~l~gk~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~----~~~~~~~~~--~~~~~~~~~Dv~~~~~v~~~~~~~~~ 78 (255)
T 4eso_A 5 NYQGKKAIVIGGTHGMGLATVRRLVEGGAEVLLTGRNES----NIARIREEF--GPRVHALRSDIADLNEIAVLGAAAGQ 78 (255)
T ss_dssp TTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHH----HHHHHHHHH--GGGEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHH----HHHHHHHHh--CCcceEEEccCCCHHHHHHHHHHHHH
Confidence 367899999999999999999999999999999999542 222222221 347899999999999998888754
Q ss_pred ---CccEEEEcccccChh----hhccChHHHHHHHHHHHHHHHHHHHhcC-CCCeEEEEcCccccCCCCCCCCCCCCCCC
Q 012176 193 ---PFTHVLHLAAQAGVR----YAMQNPQSYVASNIAGFVNLLEVCKSVN-PQPSIVWASSSSVYGLNTQVPFSESHRTD 264 (469)
Q Consensus 193 ---~~d~Vih~Aa~~~~~----~~~~~~~~~~~~Nv~~~~~ll~aa~~~~-~~~~~V~~SS~~vyg~~~~~~~~E~~~~~ 264 (469)
++|+||||||..... ...++++..+++|+.++.++++++...- ..++||++||...+.+.
T Consensus 79 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS~~~~~~~------------ 146 (255)
T 4eso_A 79 TLGAIDLLHINAGVSELEPFDQVSEASYDRQFAVNTKGAFFTVQRLTPLIREGGSIVFTSSVADEGGH------------ 146 (255)
T ss_dssp HHSSEEEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCGGGSSBC------------
T ss_pred HhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCEEEEECChhhcCCC------------
Confidence 679999999975432 2345567889999999999999987541 12489999998876532
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCCCCC----hHHHHHHHHHcCCceEEEeeCCCCcceE
Q 012176 265 QPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDM----AYFFFTKDILQGKTIDVYKTQDDREVAR 337 (469)
Q Consensus 265 ~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~~~~----~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 337 (469)
.+...|+.+|.+.+.+++.++.++ |+++++|+||.|.+|...... ....+........++ .
T Consensus 147 ~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~p~------------~ 214 (255)
T 4eso_A 147 PGMSVYSASKAALVSFASVLAAELLPRGIRVNSVSPGFIDTPTKGVAGITEAERAEFKTLGDNITPM------------K 214 (255)
T ss_dssp TTBHHHHHHHHHHHHHHHHHHHHTGGGTCEEEEEEECSBCCSSTTCTTSCHHHHHHHHHHHHHHSTT------------S
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHhhhCcEEEEEecCcccCcccccccCChhhHHHHHHHHhccCCC------------C
Confidence 345789999999999999999875 899999999999998543211 112222222222222 2
Q ss_pred ecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCCcccHHHH
Q 012176 338 DFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTSPVPVGRL 381 (469)
Q Consensus 338 ~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~~vt~~el 381 (469)
.+.+++|+|++++.++.... -..|+++++.+|...++.++
T Consensus 215 r~~~pedvA~~v~~L~s~~~----~itG~~i~vdGG~~~~l~~~ 254 (255)
T 4eso_A 215 RNGTADEVARAVLFLAFEAT----FTTGAKLAVDGGLGQKLSTA 254 (255)
T ss_dssp SCBCHHHHHHHHHHHHHTCT----TCCSCEEEESTTTTTTBCC-
T ss_pred CCcCHHHHHHHHHHHcCcCc----CccCCEEEECCCccccCcCc
Confidence 35689999999998876522 34569999999877665443
|
| >1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex, oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi} SCOP: c.2.1.2 PDB: 1mxf_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=4e-23 Score=199.71 Aligned_cols=226 Identities=10% Similarity=-0.002 Sum_probs=164.8
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeC-CCCCCChhHHHHHHHhhc--cCCeEEEEecCCCH----HHHHHh
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDN-FNSYYDPSLKRARQKLLQ--KHQVFIVEGDLNDA----PLLTKL 188 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r-~~~~~~~~~~~~~~~~~~--~~~v~~v~~Dl~d~----~~l~~~ 188 (469)
+++|+|+||||+|+||++++++|+++|++|++++| ..+ ........... ...+.++.+|++|. ++++++
T Consensus 9 ~~~k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~----~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~ 84 (276)
T 1mxh_A 9 SECPAAVITGGARRIGHSIAVRLHQQGFRVVVHYRHSEG----AAQRLVAELNAARAGSAVLCKGDLSLSSSLLDCCEDI 84 (276)
T ss_dssp --CCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHH----HHHHHHHHHHHHSTTCEEEEECCCSSSTTHHHHHHHH
T ss_pred cCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCChH----HHHHHHHHHHHhcCCceEEEeccCCCccccHHHHHHH
Confidence 56789999999999999999999999999999998 432 12222222111 34789999999999 888888
Q ss_pred hccC-----CccEEEEcccccChh----hhc-----------cChHHHHHHHHHHHHHHHHHHHhcCC--C------CeE
Q 012176 189 FDVV-----PFTHVLHLAAQAGVR----YAM-----------QNPQSYVASNIAGFVNLLEVCKSVNP--Q------PSI 240 (469)
Q Consensus 189 ~~~~-----~~d~Vih~Aa~~~~~----~~~-----------~~~~~~~~~Nv~~~~~ll~aa~~~~~--~------~~~ 240 (469)
++.+ ++|+||||||..... ... ++.+..+++|+.++.++++++..... . ++|
T Consensus 85 ~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~g~i 164 (276)
T 1mxh_A 85 IDCSFRAFGRCDVLVNNASAYYPTPLLPGDDTNGAADAKPIDAQVAELFGSNAVAPLFLIRAFARRQGEGGAWRSRNLSV 164 (276)
T ss_dssp HHHHHHHHSCCCEEEECCCCCCCCCSCC-----------CHHHHHHHHHHHHTHHHHHHHHHHHHTC-------CCCEEE
T ss_pred HHHHHHhcCCCCEEEECCCCCCCCCccccCcccccccccchHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCCCCCcEE
Confidence 8743 679999999974321 122 44567899999999999999876421 1 489
Q ss_pred EEEcCccccCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCCCCChHHHHHHH
Q 012176 241 VWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKD 317 (469)
Q Consensus 241 V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~ 317 (469)
|++||...+.+. .+...|+.+|.+.+.+++.++.++ |+++++|+||.|++| .. ....+...
T Consensus 165 v~isS~~~~~~~------------~~~~~Y~asK~a~~~l~~~la~e~~~~gi~v~~v~PG~v~t~-~~---~~~~~~~~ 228 (276)
T 1mxh_A 165 VNLCDAMTDLPL------------PGFCVYTMAKHALGGLTRAAALELAPRHIRVNAVAPGLSLLP-PA---MPQETQEE 228 (276)
T ss_dssp EEECCGGGGSCC------------TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSCC-SS---SCHHHHHH
T ss_pred EEECchhhcCCC------------CCCeehHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCcccCC-cc---CCHHHHHH
Confidence 999998877432 345789999999999999998775 899999999999998 32 11233333
Q ss_pred HHcCCceEEEeeCCCCcceEecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCCc
Q 012176 318 ILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTSP 375 (469)
Q Consensus 318 ~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~~ 375 (469)
+....++ + +++.+++|+|++++.++..... ...|++|++.++..
T Consensus 229 ~~~~~p~--------~---r~~~~~~dva~~v~~l~s~~~~---~~tG~~~~vdgG~~ 272 (276)
T 1mxh_A 229 YRRKVPL--------G---QSEASAAQIADAIAFLVSKDAG---YITGTTLKVDGGLI 272 (276)
T ss_dssp HHTTCTT--------T---SCCBCHHHHHHHHHHHHSGGGT---TCCSCEEEESTTGG
T ss_pred HHhcCCC--------C---CCCCCHHHHHHHHHHHhCcccc---CccCcEEEECCchh
Confidence 3333221 1 2278899999999998865321 23568999988753
|
| >3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=7e-24 Score=206.84 Aligned_cols=229 Identities=14% Similarity=0.116 Sum_probs=169.2
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhh--ccCCeEEEEecCCCHHHHHHhhccC
Q 012176 115 RPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLL--QKHQVFIVEGDLNDAPLLTKLFDVV 192 (469)
Q Consensus 115 ~~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~v~~v~~Dl~d~~~l~~~~~~~ 192 (469)
..++|+||||||+|+||++++++|+++|++|++++|+... ......... ...++.++.+|++|+++++++++.+
T Consensus 44 ~l~gk~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~----~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~ 119 (291)
T 3ijr_A 44 KLKGKNVLITGGDSGIGRAVSIAFAKEGANIAIAYLDEEG----DANETKQYVEKEGVKCVLLPGDLSDEQHCKDIVQET 119 (291)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCHH----HHHHHHHHHHTTTCCEEEEESCTTSHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchH----HHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHH
Confidence 3678999999999999999999999999999999986431 111111111 2347899999999999999888754
Q ss_pred -----CccEEEEcccccChh-----hhccChHHHHHHHHHHHHHHHHHHHhcCC-CCeEEEEcCccccCCCCCCCCCCCC
Q 012176 193 -----PFTHVLHLAAQAGVR-----YAMQNPQSYVASNIAGFVNLLEVCKSVNP-QPSIVWASSSSVYGLNTQVPFSESH 261 (469)
Q Consensus 193 -----~~d~Vih~Aa~~~~~-----~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~-~~~~V~~SS~~vyg~~~~~~~~E~~ 261 (469)
++|+||||||..... ...++++..+++|+.++.++++++..... .++||++||...+.+.
T Consensus 120 ~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~~--------- 190 (291)
T 3ijr_A 120 VRQLGSLNILVNNVAQQYPQQGLEYITAEQLEKTFRINIFSYFHVTKAALSHLKQGDVIINTASIVAYEGN--------- 190 (291)
T ss_dssp HHHHSSCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCCTTCEEEEECCTHHHHCC---------
T ss_pred HHHcCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCEEEEEechHhcCCC---------
Confidence 679999999974321 23455678999999999999999876532 2489999998877432
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceEe
Q 012176 262 RTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARD 338 (469)
Q Consensus 262 ~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 338 (469)
.+...|+.+|.+.+.+++.++.++ |+++++|+||.|+++....... ......+.. ......
T Consensus 191 ---~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~-~~~~~~~~~------------~~p~~r 254 (291)
T 3ijr_A 191 ---ETLIDYSATKGAIVAFTRSLSQSLVQKGIRVNGVAPGPIWTPLIPSSFD-EKKVSQFGS------------NVPMQR 254 (291)
T ss_dssp ---TTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSTHHHHHSC-HHHHHHTTT------------TSTTSS
T ss_pred ---CCChhHHHHHHHHHHHHHHHHHHHhhcCEEEEEEeeCCCcCCcccccCC-HHHHHHHHc------------cCCCCC
Confidence 345789999999999999998875 8999999999999873210000 111111111 222345
Q ss_pred cccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCCc
Q 012176 339 FTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTSP 375 (469)
Q Consensus 339 ~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~~ 375 (469)
+.+++|+|++++.++..... ...|+++++.+|..
T Consensus 255 ~~~p~dvA~~v~~L~s~~~~---~itG~~i~vdGG~~ 288 (291)
T 3ijr_A 255 PGQPYELAPAYVYLASSDSS---YVTGQMIHVNGGVI 288 (291)
T ss_dssp CBCGGGTHHHHHHHHSGGGT---TCCSCEEEESSSCC
T ss_pred CcCHHHHHHHHHHHhCCccC---CCcCCEEEECCCcc
Confidence 77899999999998865432 34569999998754
|
| >3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD binding; 2.30A {Thermoplasma volcanium} | Back alignment and structure |
|---|
Probab=99.91 E-value=3.4e-23 Score=199.66 Aligned_cols=221 Identities=11% Similarity=0.021 Sum_probs=166.8
Q ss_pred CCCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccC-
Q 012176 114 RRPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV- 192 (469)
Q Consensus 114 ~~~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~- 192 (469)
...++|+||||||+|+||++++++|+++|++|++++|+.... ...+..+.+|++|+++++++++.+
T Consensus 10 ~~~~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~-------------~~~~~~~~~Dv~~~~~v~~~~~~~~ 76 (269)
T 3vtz_A 10 EEFTDKVAIVTGGSSGIGLAVVDALVRYGAKVVSVSLDEKSD-------------VNVSDHFKIDVTNEEEVKEAVEKTT 76 (269)
T ss_dssp CTTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCC--C-------------TTSSEEEECCTTCHHHHHHHHHHHH
T ss_pred cCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCchhc-------------cCceeEEEecCCCHHHHHHHHHHHH
Confidence 347889999999999999999999999999999999965422 126778999999999999988754
Q ss_pred ----CccEEEEcccccChh----hhccChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEEcCccccCCCCCCCCCCC
Q 012176 193 ----PFTHVLHLAAQAGVR----YAMQNPQSYVASNIAGFVNLLEVCKS----VNPQPSIVWASSSSVYGLNTQVPFSES 260 (469)
Q Consensus 193 ----~~d~Vih~Aa~~~~~----~~~~~~~~~~~~Nv~~~~~ll~aa~~----~~~~~~~V~~SS~~vyg~~~~~~~~E~ 260 (469)
++|+||||||..... ...++.+..+++|+.++.++++++.. .+.. +||++||...+.+.
T Consensus 77 ~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g-~iv~isS~~~~~~~-------- 147 (269)
T 3vtz_A 77 KKYGRIDILVNNAGIEQYSPLHLTPTEIWRRIIDVNVNGSYLMAKYTIPVMLAIGHG-SIINIASVQSYAAT-------- 147 (269)
T ss_dssp HHHSCCCEEEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE-EEEEECCGGGTSBC--------
T ss_pred HHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCC-EEEEECchhhccCC--------
Confidence 679999999974432 22344567889999999999988643 4443 99999998887543
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHh--CCcEEEEeecceecCCCC---------CCChHHHHHHHHHcCCceEEEee
Q 012176 261 HRTDQPASLYAATKKAGEEIAHTYNHIY--GLALTGLRFFTVYGPWGR---------PDMAYFFFTKDILQGKTIDVYKT 329 (469)
Q Consensus 261 ~~~~~p~~~Y~~sK~~~E~~~~~~~~~~--gi~~~ilRp~~v~Gp~~~---------~~~~~~~~~~~~~~g~~~~~~~~ 329 (469)
.+...|+.+|.+.+.+++.++.++ ++++++|+||.|.++... ...........+....+
T Consensus 148 ----~~~~~Y~asKaa~~~l~~~la~e~~~~i~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p------ 217 (269)
T 3vtz_A 148 ----KNAAAYVTSKHALLGLTRSVAIDYAPKIRCNAVCPGTIMTPMVIKAAKMEVGEDENAVERKIEEWGRQHP------ 217 (269)
T ss_dssp ----TTCHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBCCHHHHHHHHHHHCCSTTHHHHHHHHHHHHST------
T ss_pred ----CCChhHHHHHHHHHHHHHHHHHHhcCCCEEEEEEECCCcCcchhhhhhccccccchhhHHHHHHHHhcCC------
Confidence 345789999999999999999887 899999999999886321 01111222222222222
Q ss_pred CCCCcceEecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCCc
Q 012176 330 QDDREVARDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTSP 375 (469)
Q Consensus 330 ~~~~~~~~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~~ 375 (469)
...+.+++|+|++++.++..... -..|+++++.+|..
T Consensus 218 ------~~r~~~pedvA~~v~~L~s~~~~---~itG~~i~vdGG~~ 254 (269)
T 3vtz_A 218 ------MGRIGRPEEVAEVVAFLASDRSS---FITGACLTVDGGLL 254 (269)
T ss_dssp ------TSSCBCHHHHHHHHHHHHSGGGT---TCCSCEEEESTTGG
T ss_pred ------CCCCcCHHHHHHHHHHHhCCccC---CCcCcEEEECCCcc
Confidence 23467899999999998865432 34569999999853
|
| >1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.91 E-value=1.4e-23 Score=201.27 Aligned_cols=236 Identities=14% Similarity=0.091 Sum_probs=169.3
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccC---
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~--- 192 (469)
.++|+|+||||+|+||++++++|+++|++|++++|+.............. ...++.++.+|++|.++++++++.+
T Consensus 12 ~~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 89 (265)
T 1h5q_A 12 FVNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVEVTEKVGKE--FGVKTKAYQCDVSNTDIVTKTIQQIDAD 89 (265)
T ss_dssp CTTEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCTTHHHHHHHHHHH--HTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCcchhhHHHHHHHHHh--cCCeeEEEEeeCCCHHHHHHHHHHHHHh
Confidence 56789999999999999999999999999999999654322211111111 1347899999999999998888753
Q ss_pred --CccEEEEcccccChh----hhccChHHHHHHHHHHHHHHHHHHHhc----CCCCeEEEEcCccccCCCCCCCCCCCCC
Q 012176 193 --PFTHVLHLAAQAGVR----YAMQNPQSYVASNIAGFVNLLEVCKSV----NPQPSIVWASSSSVYGLNTQVPFSESHR 262 (469)
Q Consensus 193 --~~d~Vih~Aa~~~~~----~~~~~~~~~~~~Nv~~~~~ll~aa~~~----~~~~~~V~~SS~~vyg~~~~~~~~E~~~ 262 (469)
++|+||||||..... ...++.+..+++|+.++.++++++... +..++||++||..++...... ..+
T Consensus 90 ~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~----~~~ 165 (265)
T 1h5q_A 90 LGPISGLIANAGVSVVKPATELTHEDFAFVYDVNVFGVFNTCRAVAKLWLQKQQKGSIVVTSSMSSQIINQSS----LNG 165 (265)
T ss_dssp SCSEEEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSCCEEE----TTE
T ss_pred cCCCCEEEECCCcCCCCchhhCCHHHHHHHHhhhhHhHHHHHHHHHHHHHhcCCCceEEEeCCchhhcccccc----ccc
Confidence 479999999974322 233455678999999999999987543 322489999998766432110 011
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceEec
Q 012176 263 TDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDF 339 (469)
Q Consensus 263 ~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 339 (469)
. .+...|+.+|.+.|.+++.++.++ |+++++||||.|+++..... ...+........++ ..+
T Consensus 166 ~-~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~--~~~~~~~~~~~~~~------------~~~ 230 (265)
T 1h5q_A 166 S-LTQVFYNSSKAACSNLVKGLAAEWASAGIRVNALSPGYVNTDQTAHM--DKKIRDHQASNIPL------------NRF 230 (265)
T ss_dssp E-CSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCGGGGGS--CHHHHHHHHHTCTT------------SSC
T ss_pred c-ccccccHHHHHHHHHHHHHHHHHHHhcCcEEEEEecCcccccccccc--chhHHHHHHhcCcc------------cCC
Confidence 1 346789999999999999998764 89999999999999854321 11222222222221 237
Q ss_pred ccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCCc
Q 012176 340 TYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTSP 375 (469)
Q Consensus 340 v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~~ 375 (469)
++++|+|++++.++..+.. ...|++|++.++..
T Consensus 231 ~~~~dva~~~~~l~~~~~~---~~~G~~~~v~gG~~ 263 (265)
T 1h5q_A 231 AQPEEMTGQAILLLSDHAT---YMTGGEYFIDGGQL 263 (265)
T ss_dssp BCGGGGHHHHHHHHSGGGT---TCCSCEEEECTTGG
T ss_pred CCHHHHHHHHHhhccCchh---cCcCcEEEecCCEe
Confidence 7899999999999865421 24569999998853
|
| >1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.91 E-value=4.7e-23 Score=198.30 Aligned_cols=230 Identities=14% Similarity=0.141 Sum_probs=164.8
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhc---cCCeEEEEecCCCHHHHHHhhccC
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQ---KHQVFIVEGDLNDAPLLTKLFDVV 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~---~~~v~~v~~Dl~d~~~l~~~~~~~ 192 (469)
.++|+|+||||+|+||++++++|+++|++|++++|+.+ ........... ..++.++.+|++|+++++++++.+
T Consensus 11 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~----~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~ 86 (267)
T 1iy8_A 11 FTDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSE----GLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTAT 86 (267)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH----HHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHH----HHHHHHHHHHhhcCCceEEEEEccCCCHHHHHHHHHHH
Confidence 67899999999999999999999999999999999542 12221121111 347899999999999999888754
Q ss_pred -----CccEEEEcccccCh-----hhhccChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEEcCccccCCCCCCCCC
Q 012176 193 -----PFTHVLHLAAQAGV-----RYAMQNPQSYVASNIAGFVNLLEVC----KSVNPQPSIVWASSSSVYGLNTQVPFS 258 (469)
Q Consensus 193 -----~~d~Vih~Aa~~~~-----~~~~~~~~~~~~~Nv~~~~~ll~aa----~~~~~~~~~V~~SS~~vyg~~~~~~~~ 258 (469)
++|+||||||.... ....++.+..+++|+.++..+++++ ++.+.. +||++||...+.+.
T Consensus 87 ~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g-~iv~isS~~~~~~~------ 159 (267)
T 1iy8_A 87 TERFGRIDGFFNNAGIEGKQNPTESFTAAEFDKVVSINLRGVFLGLEKVLKIMREQGSG-MVVNTASVGGIRGI------ 159 (267)
T ss_dssp HHHHSCCSEEEECCCCCCCCBCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCC-EEEEECCGGGTSBC------
T ss_pred HHHcCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCC-EEEEEcchhhccCC------
Confidence 67999999997432 1233456678999999988776654 445544 99999998766422
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCCC------CChHHHHHHHHHcCCceEEEee
Q 012176 259 ESHRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRP------DMAYFFFTKDILQGKTIDVYKT 329 (469)
Q Consensus 259 E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~~------~~~~~~~~~~~~~g~~~~~~~~ 329 (469)
.+...|+.+|.+.+.+++.++.++ |+++++|+||.|+++.... ......+...+....+
T Consensus 160 ------~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~p------ 227 (267)
T 1iy8_A 160 ------GNQSGYAAAKHGVVGLTRNSAVEYGRYGIRINAIAPGAIWTPMVENSMKQLDPENPRKAAEEFIQVNP------ 227 (267)
T ss_dssp ------SSBHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSHHHHHHHHHHCTTCHHHHHHHHHTTCT------
T ss_pred ------CCCccHHHHHHHHHHHHHHHHHHHHhcCeEEEEEEeCCCcCcchhccccccChhhhhhHHHHHhccCC------
Confidence 345789999999999999988764 8999999999998863110 0011111112222211
Q ss_pred CCCCcceEecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCCccc
Q 012176 330 QDDREVARDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTSPVP 377 (469)
Q Consensus 330 ~~~~~~~~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~~vt 377 (469)
...+.+++|+|++++.++..+.. ...|+++++.++..++
T Consensus 228 ------~~r~~~~~dvA~~v~~l~s~~~~---~~tG~~i~vdGG~~~~ 266 (267)
T 1iy8_A 228 ------SKRYGEAPEIAAVVAFLLSDDAS---YVNATVVPIDGGQSAA 266 (267)
T ss_dssp ------TCSCBCHHHHHHHHHHHTSGGGT---TCCSCEEEESTTTTTB
T ss_pred ------CCCCcCHHHHHHHHHHHcCcccc---CCCCCEEEECCCcccC
Confidence 12478899999999998865421 2456999999886543
|
| >2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET: NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A | Back alignment and structure |
|---|
Probab=99.91 E-value=7.9e-23 Score=195.40 Aligned_cols=225 Identities=14% Similarity=0.113 Sum_probs=163.4
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhh-ccCCeEEEEecCCCHHHHHHhhccC--
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLL-QKHQVFIVEGDLNDAPLLTKLFDVV-- 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~v~~v~~Dl~d~~~l~~~~~~~-- 192 (469)
.++|+||||||+|+||++++++|+++|++|++++|+.+ .. ...... ...++.++.+|++|+++++++++..
T Consensus 2 l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~---~~---~~~~l~~~~~~~~~~~~D~~~~~~v~~~~~~~~~ 75 (255)
T 2q2v_A 2 LKGKTALVTGSTSGIGLGIAQVLARAGANIVLNGFGDP---AP---ALAEIARHGVKAVHHPADLSDVAQIEALFALAER 75 (255)
T ss_dssp CTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEECSSCC---HH---HHHHHHTTSCCEEEECCCTTSHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCch---HH---HHHHHHhcCCceEEEeCCCCCHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999654 11 111111 1346888999999999999988743
Q ss_pred ---CccEEEEcccccChh----hhccChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEEcCccccCCCCCCCCCCCC
Q 012176 193 ---PFTHVLHLAAQAGVR----YAMQNPQSYVASNIAGFVNLLEVC----KSVNPQPSIVWASSSSVYGLNTQVPFSESH 261 (469)
Q Consensus 193 ---~~d~Vih~Aa~~~~~----~~~~~~~~~~~~Nv~~~~~ll~aa----~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~ 261 (469)
++|+||||||..... ...++++..+++|+.++.++++++ ++.+.. +||++||...+.+.
T Consensus 76 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~g-~iv~isS~~~~~~~--------- 145 (255)
T 2q2v_A 76 EFGGVDILVNNAGIQHVAPVEQFPLESWDKIIALNLSAVFHGTRLALPGMRARNWG-RIINIASVHGLVGS--------- 145 (255)
T ss_dssp HHSSCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCE-EEEEECCGGGTSCC---------
T ss_pred HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCc-EEEEEcCchhccCC---------
Confidence 569999999974321 233455678999999887777664 455544 99999998776432
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCCCCChH---HHH---H----HHHHcCCceEEEe
Q 012176 262 RTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAY---FFF---T----KDILQGKTIDVYK 328 (469)
Q Consensus 262 ~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~~~~~~---~~~---~----~~~~~g~~~~~~~ 328 (469)
.+...|+.+|.+.+.+++.++.++ |+++++||||.|++|.... .. ... . ..+...
T Consensus 146 ---~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~--~~~~~~~~~~~~~~~~~~~~~~------- 213 (255)
T 2q2v_A 146 ---TGKAAYVAAKHGVVGLTKVVGLETATSNVTCNAICPGWVLTPLVQK--QIDDRAANGGDPLQAQHDLLAE------- 213 (255)
T ss_dssp ---TTBHHHHHHHHHHHHHHHHHHHHTTTSSEEEEEEEESSBCCHHHHH--HHHHHHHHTCCHHHHHHHHHTT-------
T ss_pred ---CCchhHHHHHHHHHHHHHHHHHHhcccCcEEEEEeeCCCcCcchhh--hcccccccccchHHHHHHHHhc-------
Confidence 235689999999999999999874 7999999999999873221 00 000 0 111011
Q ss_pred eCCCCcceEecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCCc
Q 012176 329 TQDDREVARDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTSP 375 (469)
Q Consensus 329 ~~~~~~~~~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~~ 375 (469)
......+++++|+|++++.++..+.. ...|++|++.++..
T Consensus 214 ----~~p~~~~~~~~dvA~~~~~l~s~~~~---~~tG~~~~vdgG~~ 253 (255)
T 2q2v_A 214 ----KQPSLAFVTPEHLGELVLFLCSEAGS---QVRGAAWNVDGGWL 253 (255)
T ss_dssp ----TCTTCCCBCHHHHHHHHHHHTSGGGT---TCCSCEEEESTTGG
T ss_pred ----cCCCCCCcCHHHHHHHHHHHhCCccC---CCCCCEEEECCCcc
Confidence 11224588999999999998865421 23469999988753
|
| >2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6; protein-CO-factor complex, structural genomics, structural G consortium, SGC, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.91 E-value=4.8e-23 Score=195.83 Aligned_cols=224 Identities=15% Similarity=0.104 Sum_probs=162.8
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccC-Cc
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV-PF 194 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~-~~ 194 (469)
.++|+|+||||+|+||++++++|+++|++|++++|+.+ +. ....+..++.++.+|++|+++++++++.. ++
T Consensus 4 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~-------~~-~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~i 75 (246)
T 2ag5_A 4 LDGKVIILTAAAQGIGQAAALAFAREGAKVIATDINES-------KL-QELEKYPGIQTRVLDVTKKKQIDQFANEVERL 75 (246)
T ss_dssp TTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHH-------HH-GGGGGSTTEEEEECCTTCHHHHHHHHHHCSCC
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHH-------HH-HHHHhccCceEEEeeCCCHHHHHHHHHHhCCC
Confidence 56799999999999999999999999999999998432 11 11112237899999999999998877654 67
Q ss_pred cEEEEcccccChh----hhccChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEEcCccccCCCCCCCCCCCCCCCCC
Q 012176 195 THVLHLAAQAGVR----YAMQNPQSYVASNIAGFVNLLEVCKS----VNPQPSIVWASSSSVYGLNTQVPFSESHRTDQP 266 (469)
Q Consensus 195 d~Vih~Aa~~~~~----~~~~~~~~~~~~Nv~~~~~ll~aa~~----~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p 266 (469)
|+||||||..... ...++++..+++|+.++.++++++.. .+.. +||++||...+.... .+
T Consensus 76 d~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~g-~iv~isS~~~~~~~~-----------~~ 143 (246)
T 2ag5_A 76 DVLFNVAGFVHHGTVLDCEEKDWDFSMNLNVRSMYLMIKAFLPKMLAQKSG-NIINMSSVASSVKGV-----------VN 143 (246)
T ss_dssp SEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE-EEEEECCSBTTTBCC-----------TT
T ss_pred CEEEECCccCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-eEEEEechHhCcCCC-----------CC
Confidence 9999999975432 22345567899999999999998653 3443 999999987664321 14
Q ss_pred CChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCCCC----ChHHHHHHHHHcCCceEEEeeCCCCcceEec
Q 012176 267 ASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPD----MAYFFFTKDILQGKTIDVYKTQDDREVARDF 339 (469)
Q Consensus 267 ~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~~~----~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 339 (469)
...|+.+|.+.|.+++.++.++ |+++++||||.|++|..... .........+....+. ..+
T Consensus 144 ~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~ 211 (246)
T 2ag5_A 144 RCVYSTTKAAVIGLTKSVAADFIQQGIRCNCVCPGTVDTPSLQERIQARGNPEEARNDFLKRQKT------------GRF 211 (246)
T ss_dssp BHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCEECHHHHHHHHHSSSHHHHHHHHHHTCTT------------SSC
T ss_pred CccHHHHHHHHHHHHHHHHHHhhhcCcEEEEEeeCcCcCcchhhhhhcccCcHHHHHHHHhcCCC------------CCC
Confidence 5689999999999999998775 89999999999999732110 0001122222222111 236
Q ss_pred ccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCC
Q 012176 340 TYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTS 374 (469)
Q Consensus 340 v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~ 374 (469)
.+++|+|++++.++..... ...|+++++.++.
T Consensus 212 ~~~~dvA~~v~~l~s~~~~---~~tG~~i~vdgG~ 243 (246)
T 2ag5_A 212 ATAEEIAMLCVYLASDESA---YVTGNPVIIDGGW 243 (246)
T ss_dssp EEHHHHHHHHHHHHSGGGT---TCCSCEEEECTTG
T ss_pred CCHHHHHHHHHHHhCcccc---CCCCCEEEECCCc
Confidence 7899999999998865422 2456999998874
|
| >3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.91 E-value=1.4e-23 Score=201.77 Aligned_cols=227 Identities=11% Similarity=0.099 Sum_probs=168.5
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhh-ccCCeEEEEecCCCHHHHHHhhccC--
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLL-QKHQVFIVEGDLNDAPLLTKLFDVV-- 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~v~~v~~Dl~d~~~l~~~~~~~-- 192 (469)
.++|+||||||+|+||++++++|+++|++|++++|+.+ .......... ...++.++.+|++|+++++++++..
T Consensus 9 l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~----~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 84 (264)
T 3ucx_A 9 LTDKVVVISGVGPALGTTLARRCAEQGADLVLAARTVE----RLEDVAKQVTDTGRRALSVGTDITDDAQVAHLVDETMK 84 (264)
T ss_dssp TTTCEEEEESCCTTHHHHHHHHHHHTTCEEEEEESCHH----HHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCHH----HHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999999543 2222222221 2347999999999999999888754
Q ss_pred ---CccEEEEcccccCh-----hhhccChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEEcCccccCCCCCCCCCCC
Q 012176 193 ---PFTHVLHLAAQAGV-----RYAMQNPQSYVASNIAGFVNLLEVCKS----VNPQPSIVWASSSSVYGLNTQVPFSES 260 (469)
Q Consensus 193 ---~~d~Vih~Aa~~~~-----~~~~~~~~~~~~~Nv~~~~~ll~aa~~----~~~~~~~V~~SS~~vyg~~~~~~~~E~ 260 (469)
++|+||||||.... ....++++..+++|+.++.++++++.. .+ ++||++||...+.+.
T Consensus 85 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~--g~iv~isS~~~~~~~-------- 154 (264)
T 3ucx_A 85 AYGRVDVVINNAFRVPSMKPFANTTFEHMRDAIELTVFGALRLIQGFTPALEESK--GAVVNVNSMVVRHSQ-------- 154 (264)
T ss_dssp HTSCCSEEEECCCSCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHT--CEEEEECCGGGGCCC--------
T ss_pred HcCCCcEEEECCCCCCCCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC--CEEEEECcchhccCC--------
Confidence 68999999987422 223455667899999999999998643 33 499999998776432
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeecceecCCCCCC---------ChHHHHHHHHHcCCceEEEe
Q 012176 261 HRTDQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPD---------MAYFFFTKDILQGKTIDVYK 328 (469)
Q Consensus 261 ~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~Gp~~~~~---------~~~~~~~~~~~~g~~~~~~~ 328 (469)
.+...|+.+|.+.+.+++.++.+ +|+++++|+||.|++|..... .....+...+..+.+
T Consensus 155 ----~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p----- 225 (264)
T 3ucx_A 155 ----AKYGAYKMAKSALLAMSQTLATELGEKGIRVNSVLPGYIWGGTLKSYFEHQAGKYGTSVEDIYNAAAAGSD----- 225 (264)
T ss_dssp ----TTCHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSCBSHHHHHHHHHHHHHTTCCHHHHHHHHHTTSS-----
T ss_pred ----CccHHHHHHHHHHHHHHHHHHHHhCccCeEEEEEecCccccccHHHHHHhhhhhcCCCHHHHHHHHhccCC-----
Confidence 34568999999999999999877 589999999999998732210 001222333333332
Q ss_pred eCCCCcceEecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCCc
Q 012176 329 TQDDREVARDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTSP 375 (469)
Q Consensus 329 ~~~~~~~~~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~~ 375 (469)
...+.+++|+|++++.++..... ...|+++++.+|..
T Consensus 226 -------~~r~~~p~dvA~~v~~L~s~~~~---~itG~~i~vdGG~~ 262 (264)
T 3ucx_A 226 -------LKRLPTEDEVASAILFMASDLAS---GITGQALDVNCGEY 262 (264)
T ss_dssp -------SSSCCBHHHHHHHHHHHHSGGGT---TCCSCEEEESTTSS
T ss_pred -------cccCCCHHHHHHHHHHHcCcccc---CCCCCEEEECCCcc
Confidence 23577899999999998865422 34569999998864
|
| >2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=6.4e-24 Score=205.62 Aligned_cols=225 Identities=17% Similarity=0.111 Sum_probs=164.2
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhc-cCCeEEEEecCCCHHHHHHhhccC--
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQ-KHQVFIVEGDLNDAPLLTKLFDVV-- 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~v~~v~~Dl~d~~~l~~~~~~~-- 192 (469)
.++|+|+||||+|+||++++++|+++|++|++++|+.+ ........... ..++.++.+|++|+++++++++.+
T Consensus 20 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~----~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 95 (277)
T 2rhc_B 20 QDSEVALVTGATSGIGLEIARRLGKEGLRVFVCARGEE----GLRTTLKELREAGVEADGRTCDVRSVPEIEALVAAVVE 95 (277)
T ss_dssp TTSCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHH----HHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHH----HHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHH
Confidence 57789999999999999999999999999999999542 12211122111 346889999999999998888743
Q ss_pred ---CccEEEEcccccChh----hhccChHHHHHHHHHHHHHHHHHHHhc------CCCCeEEEEcCccccCCCCCCCCCC
Q 012176 193 ---PFTHVLHLAAQAGVR----YAMQNPQSYVASNIAGFVNLLEVCKSV------NPQPSIVWASSSSVYGLNTQVPFSE 259 (469)
Q Consensus 193 ---~~d~Vih~Aa~~~~~----~~~~~~~~~~~~Nv~~~~~ll~aa~~~------~~~~~~V~~SS~~vyg~~~~~~~~E 259 (469)
++|+||||||..... ...++++..+++|+.++.++++++... +. ++||++||...+.+.
T Consensus 96 ~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~m~~~~~-g~iv~isS~~~~~~~------- 167 (277)
T 2rhc_B 96 RYGPVDVLVNNAGRPGGGATAELADELWLDVVETNLTGVFRVTKQVLKAGGMLERGT-GRIVNIASTGGKQGV------- 167 (277)
T ss_dssp HTCSCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTTCHHHHTE-EEEEEECCGGGTSCC-------
T ss_pred HhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHhChhhHhhcCC-eEEEEECccccccCC-------
Confidence 579999999974321 223445678999999999999987654 43 399999998765321
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCCCCChH-----------HHHHHHHHcCCceE
Q 012176 260 SHRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAY-----------FFFTKDILQGKTID 325 (469)
Q Consensus 260 ~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~~~~~~-----------~~~~~~~~~g~~~~ 325 (469)
.+...|+.+|.+.+.+++.++.++ |+++++|+||.|+++.... .. ......+....
T Consensus 168 -----~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~--- 237 (277)
T 2rhc_B 168 -----VHAAPYSASKHGVVGFTKALGLELARTGITVNAVCPGFVETPMAAS--VREHYSDIWEVSTEEAFDRITARV--- 237 (277)
T ss_dssp -----TTCHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEEECSBCSHHHHH--HHHHHHHHHTCCHHHHHHHHHHHS---
T ss_pred -----CCCccHHHHHHHHHHHHHHHHHHHHHhCcEEEEEecCcCcCchhhh--hhhhcccccccchHHHHHHHHhcC---
Confidence 345789999999999999998774 7999999999999863211 00 01111111111
Q ss_pred EEeeCCCCcceEecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCC
Q 012176 326 VYKTQDDREVARDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTS 374 (469)
Q Consensus 326 ~~~~~~~~~~~~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~ 374 (469)
....+++++|+|++++.++..+.. ...|++|++.++.
T Consensus 238 ---------p~~r~~~~~dvA~~v~~l~s~~~~---~~tG~~~~vdGG~ 274 (277)
T 2rhc_B 238 ---------PIGRYVQPSEVAEMVAYLIGPGAA---AVTAQALNVCGGL 274 (277)
T ss_dssp ---------TTSSCBCHHHHHHHHHHHHSGGGT---TCCSCEEEESTTC
T ss_pred ---------CCCCCcCHHHHHHHHHHHhCchhc---CCCCcEEEECCCc
Confidence 123578999999999998865421 2456999998874
|
| >4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=99.91 E-value=2.1e-23 Score=200.79 Aligned_cols=231 Identities=15% Similarity=0.069 Sum_probs=168.9
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhh--ccCCeEEEEecCCCHHHHHHhhccC
Q 012176 115 RPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLL--QKHQVFIVEGDLNDAPLLTKLFDVV 192 (469)
Q Consensus 115 ~~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~v~~v~~Dl~d~~~l~~~~~~~ 192 (469)
..++|+||||||+|+||++++++|+++|++|++++|+.+. ......... ...++.++.+|++|+++++++++..
T Consensus 17 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~----~~~~~~~l~~~~~~~~~~~~~Dv~~~~~v~~~~~~~ 92 (266)
T 4egf_A 17 RLDGKRALITGATKGIGADIARAFAAAGARLVLSGRDVSE----LDAARRALGEQFGTDVHTVAIDLAEPDAPAELARRA 92 (266)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHH----HHHHHHHHHHHHCCCEEEEECCTTSTTHHHHHHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHH----HHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHH
Confidence 3678999999999999999999999999999999995431 222222221 2457999999999999998888754
Q ss_pred -----CccEEEEcccccChh----hhccChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEEcCccccCCCCCCCCCC
Q 012176 193 -----PFTHVLHLAAQAGVR----YAMQNPQSYVASNIAGFVNLLEVCKS----VNPQPSIVWASSSSVYGLNTQVPFSE 259 (469)
Q Consensus 193 -----~~d~Vih~Aa~~~~~----~~~~~~~~~~~~Nv~~~~~ll~aa~~----~~~~~~~V~~SS~~vyg~~~~~~~~E 259 (469)
++|+||||||..... ...++++..+++|+.++.++++++.. .+..++||++||...+.+.
T Consensus 93 ~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~~~------- 165 (266)
T 4egf_A 93 AEAFGGLDVLVNNAGISHPQPVVDTDPQLFDATIAVNLRAPALLASAVGKAMVAAGEGGAIITVASAAALAPL------- 165 (266)
T ss_dssp HHHHTSCSEEEEECCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTSCC-------
T ss_pred HHHcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEEcchhhccCC-------
Confidence 679999999975432 23345567899999999999988653 3323489999998876432
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcce
Q 012176 260 SHRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVA 336 (469)
Q Consensus 260 ~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 336 (469)
.+...|+.+|.+.+.+++.++.++ |+++++|+||.|.++..............+....++
T Consensus 166 -----~~~~~Y~asK~a~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~p~------------ 228 (266)
T 4egf_A 166 -----PDHYAYCTSKAGLVMATKVLARELGPHGIRANSVCPTVVLTEMGQRVWGDEAKSAPMIARIPL------------ 228 (266)
T ss_dssp -----TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCBCSHHHHHHTCSHHHHHHHHTTCTT------------
T ss_pred -----CCChHHHHHHHHHHHHHHHHHHHHhhhCeEEEEEEeCCCcCchhhhhccChHHHHHHHhcCCC------------
Confidence 345789999999999999998774 899999999999886321100001222333333332
Q ss_pred EecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCCcc
Q 012176 337 RDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTSPV 376 (469)
Q Consensus 337 ~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~~v 376 (469)
..+..++|+|++++.++..... -..|+++++.+|..+
T Consensus 229 ~r~~~p~dva~~v~~L~s~~~~---~itG~~i~vdGG~~~ 265 (266)
T 4egf_A 229 GRFAVPHEVSDAVVWLASDAAS---MINGVDIPVDGGYTM 265 (266)
T ss_dssp SSCBCHHHHHHHHHHHHSGGGT---TCCSCEEEESTTGGG
T ss_pred CCCcCHHHHHHHHHHHhCchhc---CccCcEEEECCCccC
Confidence 2467799999999998865422 345699999987543
|
| >1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain dehydrogenase, ketone BODY, beta hydroxybutyrate, oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi} SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A* 2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=4.1e-23 Score=197.96 Aligned_cols=236 Identities=13% Similarity=0.091 Sum_probs=161.6
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhc--cCCeEEEEecCCCHHHHHHhhccC-
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQ--KHQVFIVEGDLNDAPLLTKLFDVV- 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~--~~~v~~v~~Dl~d~~~l~~~~~~~- 192 (469)
.++|+|+||||+|+||++++++|+++|++|++++|+.+. ........... ..++.++.+|++|+++++++++.+
T Consensus 2 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~---~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~ 78 (260)
T 1x1t_A 2 LKGKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDAA---EIEKVRAGLAAQHGVKVLYDGADLSKGEAVRGLVDNAV 78 (260)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEECCSCHH---HHHHHHHHHHHHHTSCEEEECCCTTSHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHcCCEEEEEeCCcch---HHHHHHHHHHhccCCcEEEEECCCCCHHHHHHHHHHHH
Confidence 457899999999999999999999999999999986431 02222222111 347889999999999999888753
Q ss_pred ----CccEEEEcccccCh----hhhccChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEEcCccccCCCCCCCCCCC
Q 012176 193 ----PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCK----SVNPQPSIVWASSSSVYGLNTQVPFSES 260 (469)
Q Consensus 193 ----~~d~Vih~Aa~~~~----~~~~~~~~~~~~~Nv~~~~~ll~aa~----~~~~~~~~V~~SS~~vyg~~~~~~~~E~ 260 (469)
++|+||||||.... ....++++..+++|+.++.++++++. +.+.. +||++||...+.+.
T Consensus 79 ~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g-~iv~isS~~~~~~~-------- 149 (260)
T 1x1t_A 79 RQMGRIDILVNNAGIQHTALIEDFPTEKWDAILALNLSAVFHGTAAALPHMKKQGFG-RIINIASAHGLVAS-------- 149 (260)
T ss_dssp HHHSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE-EEEEECCGGGTSCC--------
T ss_pred HhcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-EEEEECcHHhCcCC--------
Confidence 57999999997432 12344566899999999999998874 34443 99999998776432
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCCCCChHHHHHHHHHcCCce-EEEeeC-CCCcc
Q 012176 261 HRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTI-DVYKTQ-DDREV 335 (469)
Q Consensus 261 ~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~-~~~~~~-~~~~~ 335 (469)
.+...|+.+|.+.+.+++.++.++ |+++++|+||.|.++...... ..+... .+... ...... .....
T Consensus 150 ----~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~--~~~~~~--~~~~~~~~~~~~~~~~~p 221 (260)
T 1x1t_A 150 ----ANKSAYVAAKHGVVGFTKVTALETAGQGITANAICPGWVRTPLVEKQI--SALAEK--NGVDQETAARELLSEKQP 221 (260)
T ss_dssp ----TTCHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCBCC----------------------------CHHHHCT
T ss_pred ----CCCchHHHHHHHHHHHHHHHHHHhccCCEEEEEEeecCccCchHHHhh--hhhccc--cCCchHHHHHHHhhccCC
Confidence 345789999999999999998775 899999999999997533210 000000 00000 000000 00011
Q ss_pred eEecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCC
Q 012176 336 ARDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTS 374 (469)
Q Consensus 336 ~~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~ 374 (469)
...+.+++|+|++++.++..... ...|++|++.++.
T Consensus 222 ~~~~~~p~dva~~~~~l~s~~~~---~~tG~~~~vdgG~ 257 (260)
T 1x1t_A 222 SLQFVTPEQLGGTAVFLASDAAA---QITGTTVSVDGGW 257 (260)
T ss_dssp TCCCBCHHHHHHHHHHHHSGGGT---TCCSCEEEESTTG
T ss_pred CCCCcCHHHHHHHHHHHhChhhc---CCCCCEEEECCCc
Confidence 23578999999999998865421 2456999998874
|
| >2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=4.2e-23 Score=198.00 Aligned_cols=224 Identities=13% Similarity=0.068 Sum_probs=164.2
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccC---
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~--- 192 (469)
.++|+|+||||+|+||++++++|+++|++|++++|+.... ....... ..++.++.+|++|+++++++++..
T Consensus 10 ~~~k~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~~~~----~~~~~~~--~~~~~~~~~D~~~~~~v~~~~~~~~~~ 83 (265)
T 2o23_A 10 VKGLVAVITGGASGLGLATAERLVGQGASAVLLDLPNSGG----EAQAKKL--GNNCVFAPADVTSEKDVQTALALAKGK 83 (265)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSSH----HHHHHHH--CTTEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCcHhH----HHHHHHh--CCceEEEEcCCCCHHHHHHHHHHHHHH
Confidence 5789999999999999999999999999999999976422 2222221 347899999999999999988743
Q ss_pred --CccEEEEcccccChh----------hhccChHHHHHHHHHHHHHHHHHHHhc----------CCCCeEEEEcCccccC
Q 012176 193 --PFTHVLHLAAQAGVR----------YAMQNPQSYVASNIAGFVNLLEVCKSV----------NPQPSIVWASSSSVYG 250 (469)
Q Consensus 193 --~~d~Vih~Aa~~~~~----------~~~~~~~~~~~~Nv~~~~~ll~aa~~~----------~~~~~~V~~SS~~vyg 250 (469)
++|+||||||..... ...++.+..+++|+.++.++++++... +. ++||++||...+.
T Consensus 84 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~~~~-~~iv~isS~~~~~ 162 (265)
T 2o23_A 84 FGRVDVAVNCAGIAVASKTYNLKKGQTHTLEDFQRVLDVNLMGTFNVIRLVAGEMGQNEPDQGGQR-GVIINTASVAAFE 162 (265)
T ss_dssp HSCCCEEEECCCCCCCCCSEETTTTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSCCCTTSCC-EEEEEECCTHHHH
T ss_pred CCCCCEEEECCccCCCCccccccccCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccCCCC-cEEEEeCChhhcC
Confidence 579999999974321 233456688999999999999987654 33 3899999987764
Q ss_pred CCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEE
Q 012176 251 LNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVY 327 (469)
Q Consensus 251 ~~~~~~~~E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~ 327 (469)
+. .+...|+.+|.+.+.+++.++.++ |+++++|+||.|.++..... ...+...+....+.
T Consensus 163 ~~------------~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~--~~~~~~~~~~~~~~--- 225 (265)
T 2o23_A 163 GQ------------VGQAAYSASKGGIVGMTLPIARDLAPIGIRVMTIAPGLFGTPLLTSL--PEKVCNFLASQVPF--- 225 (265)
T ss_dssp CC------------TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCC------------CHHHHTCSS---
T ss_pred CC------------CCCchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEEeccccCcccccc--CHHHHHHHHHcCCC---
Confidence 32 345789999999999999988764 89999999999988743310 00111111111111
Q ss_pred eeCCCCcceEecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCCcc
Q 012176 328 KTQDDREVARDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTSPV 376 (469)
Q Consensus 328 ~~~~~~~~~~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~~v 376 (469)
...+++++|+|++++.++.+. ...|+++++.++..+
T Consensus 226 --------~~~~~~~~dva~~~~~l~~~~-----~~~G~~i~vdgG~~~ 261 (265)
T 2o23_A 226 --------PSRLGDPAEYAHLVQAIIENP-----FLNGEVIRLDGAIRM 261 (265)
T ss_dssp --------SCSCBCHHHHHHHHHHHHHCT-----TCCSCEEEESTTCCC
T ss_pred --------cCCCCCHHHHHHHHHHHhhcC-----ccCceEEEECCCEec
Confidence 023678999999999998653 345699999887543
|
| >4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=99.91 E-value=6e-23 Score=198.76 Aligned_cols=228 Identities=13% Similarity=0.088 Sum_probs=167.5
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccC---
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~--- 192 (469)
.++|+||||||+|+||++++++|+++|++|++++|+.+ ........ ...++..+.+|++|+++++++++.+
T Consensus 25 l~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~----~~~~~~~~--~~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 98 (277)
T 4dqx_A 25 LNQRVCIVTGGGSGIGRATAELFAKNGAYVVVADVNED----AAVRVANE--IGSKAFGVRVDVSSAKDAESMVEKTTAK 98 (277)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHH----HHHHHHHH--HCTTEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHH----HHHHHHHH--hCCceEEEEecCCCHHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999998532 11222122 1347899999999999999988754
Q ss_pred --CccEEEEcccccChh----hhccChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEEcCccccCCCCCCCCCCCCC
Q 012176 193 --PFTHVLHLAAQAGVR----YAMQNPQSYVASNIAGFVNLLEVCKS----VNPQPSIVWASSSSVYGLNTQVPFSESHR 262 (469)
Q Consensus 193 --~~d~Vih~Aa~~~~~----~~~~~~~~~~~~Nv~~~~~ll~aa~~----~~~~~~~V~~SS~~vyg~~~~~~~~E~~~ 262 (469)
++|+||||||..... ...++.+..+++|+.++.++++++.. .+. ++||++||...+.+.
T Consensus 99 ~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~-g~iv~isS~~~~~~~---------- 167 (277)
T 4dqx_A 99 WGRVDVLVNNAGFGTTGNVVTIPEETWDRIMSVNVKGIFLCSKYVIPVMRRNGG-GSIINTTSYTATSAI---------- 167 (277)
T ss_dssp HSCCCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTTC-EEEEEECCGGGTSCC----------
T ss_pred cCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCC-cEEEEECchhhCcCC----------
Confidence 679999999974332 23445567899999999999988743 333 399999998876432
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCCC----CChHHHHHHHHHcCCceEEEeeCCCCcc
Q 012176 263 TDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRP----DMAYFFFTKDILQGKTIDVYKTQDDREV 335 (469)
Q Consensus 263 ~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~~----~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 335 (469)
.+...|+.+|.+.+.+++.++.++ |+++++|+||.|.++.... ..........+....+
T Consensus 168 --~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~------------ 233 (277)
T 4dqx_A 168 --ADRTAYVASKGAISSLTRAMAMDHAKEGIRVNAVAPGTIDSPYFTKIFAEAKDPAKLRSDFNARAV------------ 233 (277)
T ss_dssp --TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHHHHHTCSCHHHHHHHHHTTST------------
T ss_pred --CCChhHHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcCcCchhhhhcccccchhHHHHHHHhcCc------------
Confidence 345789999999999999998775 8999999999998863100 0011111112222222
Q ss_pred eEecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCCccc
Q 012176 336 ARDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTSPVP 377 (469)
Q Consensus 336 ~~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~~vt 377 (469)
...+.+++|+|++++.++..... -..|+++++.+|..++
T Consensus 234 ~~r~~~pedvA~~v~~L~s~~~~---~itG~~i~vdGG~~~~ 272 (277)
T 4dqx_A 234 MDRMGTAEEIAEAMLFLASDRSR---FATGSILTVDGGSSIG 272 (277)
T ss_dssp TCSCBCHHHHHHHHHHHHSGGGT---TCCSCEEEESSSSSSC
T ss_pred ccCCcCHHHHHHHHHHHhCCccC---CCcCCEEEECCchhhh
Confidence 23467899999999998865432 2456999999987543
|
| >1zk4_A R-specific alcohol dehydrogenase; short chain reductases/dehydrogenases, magnesium dependence, oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis} SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A* 1zk1_A* 1zk2_A 1zk3_A | Back alignment and structure |
|---|
Probab=99.91 E-value=2.6e-23 Score=197.89 Aligned_cols=228 Identities=16% Similarity=0.104 Sum_probs=163.6
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccC---
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~--- 192 (469)
.++|+|+||||+|+||++++++|+++|++|++++|+.+ .............++.++.+|++|+++++++++..
T Consensus 4 ~~~k~vlVtGasggiG~~~a~~l~~~G~~V~~~~r~~~----~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 79 (251)
T 1zk4_A 4 LDGKVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSD----VGEKAAKSVGTPDQIQFFQHDSSDEDGWTKLFDATEKA 79 (251)
T ss_dssp TTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHH----HHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCcEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHH----HHHHHHHHhhccCceEEEECCCCCHHHHHHHHHHHHHH
Confidence 56789999999999999999999999999999999532 12222222222257999999999999999888763
Q ss_pred --CccEEEEcccccChh----hhccChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEEcCccccCCCCCCCCCCCCC
Q 012176 193 --PFTHVLHLAAQAGVR----YAMQNPQSYVASNIAGFVNLLEVC----KSVNPQPSIVWASSSSVYGLNTQVPFSESHR 262 (469)
Q Consensus 193 --~~d~Vih~Aa~~~~~----~~~~~~~~~~~~Nv~~~~~ll~aa----~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~ 262 (469)
++|+||||||..... ...++.+..+++|+.++..+++++ ++.+..++||++||...+.+.
T Consensus 80 ~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~~---------- 149 (251)
T 1zk4_A 80 FGPVSTLVNNAGIAVNKSVEETTTAEWRKLLAVNLDGVFFGTRLGIQRMKNKGLGASIINMSSIEGFVGD---------- 149 (251)
T ss_dssp HSSCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSCEEEEEECCGGGTSCC----------
T ss_pred hCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCCCEEEEeCCchhccCC----------
Confidence 579999999974321 223445678999999888776664 444542499999998877532
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHH-----hCCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceE
Q 012176 263 TDQPASLYAATKKAGEEIAHTYNHI-----YGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVAR 337 (469)
Q Consensus 263 ~~~p~~~Y~~sK~~~E~~~~~~~~~-----~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 337 (469)
.+...|+.+|.+.|.+++.++.+ .|+++++||||.|+++....... ......+ .. .....
T Consensus 150 --~~~~~Y~~sK~a~~~~~~~~a~e~~~~~~~i~v~~v~Pg~v~t~~~~~~~~-~~~~~~~--~~----------~~~~~ 214 (251)
T 1zk4_A 150 --PSLGAYNASKGAVRIMSKSAALDCALKDYDVRVNTVHPGYIKTPLVDDLPG-AEEAMSQ--RT----------KTPMG 214 (251)
T ss_dssp --TTCHHHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEEEECCBCCHHHHTSTT-HHHHHTS--TT----------TCTTS
T ss_pred --CCCccchHHHHHHHHHHHHHHHHhcccCCCeEEEEEeeCcCcchhhhhcCc-hhhhHHH--hh----------cCCCC
Confidence 34578999999999999988753 47999999999999974321100 0111101 11 11123
Q ss_pred ecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCCc
Q 012176 338 DFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTSP 375 (469)
Q Consensus 338 ~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~~ 375 (469)
.+++++|+|++++.++..... ...|++|++.++..
T Consensus 215 ~~~~~~dva~~~~~l~~~~~~---~~~G~~~~v~gG~~ 249 (251)
T 1zk4_A 215 HIGEPNDIAYICVYLASNESK---FATGSEFVVDGGYT 249 (251)
T ss_dssp SCBCHHHHHHHHHHHHSGGGT---TCCSCEEEESTTGG
T ss_pred CCcCHHHHHHHHHHHcCcccc---cccCcEEEECCCcc
Confidence 478999999999999865421 23468999998753
|
| >3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=99.90 E-value=5.3e-23 Score=194.26 Aligned_cols=202 Identities=11% Similarity=0.015 Sum_probs=141.9
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCC-CcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCc
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRG-DGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPF 194 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~ 194 (469)
+.+|+||||||+|+||++|+++|+++| ++|++++|..+.... +...+++++.+|++|+++++++++++
T Consensus 21 ~~mk~vlVtGatG~iG~~l~~~L~~~G~~~V~~~~R~~~~~~~---------~~~~~~~~~~~Dl~d~~~~~~~~~~~-- 89 (236)
T 3qvo_A 21 GHMKNVLILGAGGQIARHVINQLADKQTIKQTLFARQPAKIHK---------PYPTNSQIIMGDVLNHAALKQAMQGQ-- 89 (236)
T ss_dssp -CCEEEEEETTTSHHHHHHHHHHTTCTTEEEEEEESSGGGSCS---------SCCTTEEEEECCTTCHHHHHHHHTTC--
T ss_pred CcccEEEEEeCCcHHHHHHHHHHHhCCCceEEEEEcChhhhcc---------cccCCcEEEEecCCCHHHHHHHhcCC--
Confidence 345799999999999999999999999 899999996542221 22348999999999999999999987
Q ss_pred cEEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcCccccCCCCCCC--CCCCCCCCCCCChHHH
Q 012176 195 THVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVP--FSESHRTDQPASLYAA 272 (469)
Q Consensus 195 d~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS~~vyg~~~~~~--~~E~~~~~~p~~~Y~~ 272 (469)
|+|||||+.... ...+.++++++++.+.+ +||++||.++|+...... ..+.... .+..
T Consensus 90 D~vv~~a~~~~~--------------~~~~~~~~~~~~~~~~~-~iV~iSS~~~~~~~~~~~~~~~~~~~~-----~~~~ 149 (236)
T 3qvo_A 90 DIVYANLTGEDL--------------DIQANSVIAAMKACDVK-RLIFVLSLGIYDEVPGKFVEWNNAVIG-----EPLK 149 (236)
T ss_dssp SEEEEECCSTTH--------------HHHHHHHHHHHHHTTCC-EEEEECCCCC----------------C-----GGGH
T ss_pred CEEEEcCCCCch--------------hHHHHHHHHHHHHcCCC-EEEEEecceecCCCCcccccchhhccc-----chHH
Confidence 999999986321 13467899999999976 999999999998654322 2222221 2233
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceEecccHHHHHHHHHHH
Q 012176 273 TKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGA 352 (469)
Q Consensus 273 sK~~~E~~~~~~~~~~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~~~~~~ 352 (469)
.+..+|..++ ..|+++++||||.++++.... ..... ........+++++|+|++++.+
T Consensus 150 ~~~~~~~~l~----~~gi~~~~vrPg~i~~~~~~~----------------~~~~~--~~~~~~~~~i~~~DvA~~i~~l 207 (236)
T 3qvo_A 150 PFRRAADAIE----ASGLEYTILRPAWLTDEDIID----------------YELTS--RNEPFKGTIVSRKSVAALITDI 207 (236)
T ss_dssp HHHHHHHHHH----TSCSEEEEEEECEEECCSCCC----------------CEEEC--TTSCCSCSEEEHHHHHHHHHHH
T ss_pred HHHHHHHHHH----HCCCCEEEEeCCcccCCCCcc----------------eEEec--cCCCCCCcEECHHHHHHHHHHH
Confidence 3444454443 369999999999999974321 11110 1111123689999999999999
Q ss_pred hccCCCCCCCCCceEEEeCCCC
Q 012176 353 TGSGGKKRGPAQLRVYNLGNTS 374 (469)
Q Consensus 353 ~~~~~~~~~~~~~~iyni~~~~ 374 (469)
+.++.. ..+++|++++++
T Consensus 208 l~~~~~----~~g~~~~i~~~~ 225 (236)
T 3qvo_A 208 IDKPEK----HIGENIGINQPG 225 (236)
T ss_dssp HHSTTT----TTTEEEEEECSS
T ss_pred HcCccc----ccCeeEEecCCC
Confidence 988742 346999999875
|
| >3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.90 E-value=5.1e-23 Score=199.57 Aligned_cols=233 Identities=14% Similarity=0.111 Sum_probs=172.2
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhc-cCCeEEEEecCCCHHHHHHhhccC-
Q 012176 115 RPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQ-KHQVFIVEGDLNDAPLLTKLFDVV- 192 (469)
Q Consensus 115 ~~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~v~~v~~Dl~d~~~l~~~~~~~- 192 (469)
..++|+||||||+|+||++++++|+++|++|++++|+.+ ........... ..++.++.+|++|+++++++++.+
T Consensus 5 ~l~gk~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~----~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~ 80 (280)
T 3tox_A 5 RLEGKIAIVTGASSGIGRAAALLFAREGAKVVVTARNGN----ALAELTDEIAGGGGEAAALAGDVGDEALHEALVELAV 80 (280)
T ss_dssp TTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEECCSCHH----HHHHHHHHHTTTTCCEEECCCCTTCHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHH----HHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHH
Confidence 367899999999999999999999999999999998543 22222222221 347899999999999999888754
Q ss_pred ----CccEEEEcccccCh-----hhhccChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEEcCccccCCCCCCCCCC
Q 012176 193 ----PFTHVLHLAAQAGV-----RYAMQNPQSYVASNIAGFVNLLEVCKS----VNPQPSIVWASSSSVYGLNTQVPFSE 259 (469)
Q Consensus 193 ----~~d~Vih~Aa~~~~-----~~~~~~~~~~~~~Nv~~~~~ll~aa~~----~~~~~~~V~~SS~~vyg~~~~~~~~E 259 (469)
++|+||||||.... ..+.++++..+++|+.++.++++++.. .+. ++||++||...+...
T Consensus 81 ~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~-g~iv~isS~~~~~~~------- 152 (280)
T 3tox_A 81 RRFGGLDTAFNNAGALGAMGEISSLSVEGWRETLDTNLTSAFLAAKYQVPAIAALGG-GSLTFTSSFVGHTAG------- 152 (280)
T ss_dssp HHHSCCCEEEECCCCCCSCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTC-EEEEEECCSBTTTBC-------
T ss_pred HHcCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCC-CEEEEEcChhhCcCC-------
Confidence 67999999996532 233455678999999999999998643 333 499999998766211
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCCCC--ChHHHHHHHHHcCCceEEEeeCCCCc
Q 012176 260 SHRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPD--MAYFFFTKDILQGKTIDVYKTQDDRE 334 (469)
Q Consensus 260 ~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~~ 334 (469)
..+...|+.+|.+.+.+++.++.++ |+++++|+||.|.+|..... .........+....++
T Consensus 153 ----~~~~~~Y~asKaa~~~l~~~la~e~~~~gIrvn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~p~---------- 218 (280)
T 3tox_A 153 ----FAGVAPYAASKAGLIGLVQALAVELGARGIRVNALLPGGTDTPANFANLPGAAPETRGFVEGLHAL---------- 218 (280)
T ss_dssp ----CTTCHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBSSTTSGGGSTTCCTHHHHHHHTTSTT----------
T ss_pred ----CCCchhHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEECCCCCchhhhhccccCHHHHHHHhccCcc----------
Confidence 1345789999999999999999875 89999999999999854320 0011223333333322
Q ss_pred ceEecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCCcccH
Q 012176 335 VARDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTSPVPV 378 (469)
Q Consensus 335 ~~~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~~vt~ 378 (469)
..+.+++|+|++++.++..... -..|+++++.+|..++.
T Consensus 219 --~r~~~pedvA~~v~~L~s~~a~---~itG~~i~vdGG~~~~~ 257 (280)
T 3tox_A 219 --KRIARPEEIAEAALYLASDGAS---FVTGAALLADGGASVTK 257 (280)
T ss_dssp --SSCBCHHHHHHHHHHHHSGGGT---TCCSCEEEESTTGGGCC
T ss_pred --CCCcCHHHHHHHHHHHhCcccc---CCcCcEEEECCCccccc
Confidence 2467899999999998875432 34569999999876554
|
| >2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural genomics, southea collaboratory for structural genomics, secsg; 1.91A {Thermus thermophilus HB8} | Back alignment and structure |
|---|
Probab=99.90 E-value=1e-23 Score=199.75 Aligned_cols=223 Identities=13% Similarity=0.041 Sum_probs=158.6
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHCCCcEEEE-eCCCCCCChhHHHHHHHhh-ccCCeEE-EEecCCCHHHHHHhhccC--
Q 012176 118 GMTVLVTGAAGFVGSHCSLALKKRGDGVLGL-DNFNSYYDPSLKRARQKLL-QKHQVFI-VEGDLNDAPLLTKLFDVV-- 192 (469)
Q Consensus 118 ~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~-~r~~~~~~~~~~~~~~~~~-~~~~v~~-v~~Dl~d~~~l~~~~~~~-- 192 (469)
+|+|+||||+|+||++++++|+++|++|+++ +|+.+ .......... ...++.. +.+|++|.++++++++..
T Consensus 1 ~k~vlITGasggiG~~~a~~l~~~G~~v~~~~~r~~~----~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 76 (245)
T 2ph3_A 1 MRKALITGASRGIGRAIALRLAEDGFALAIHYGQNRE----KAEEVAEEARRRGSPLVAVLGANLLEAEAATALVHQAAE 76 (245)
T ss_dssp CCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESSCHH----HHHHHHHHHHHTTCSCEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHH----HHHHHHHHHHhcCCceEEEEeccCCCHHHHHHHHHHHHH
Confidence 4689999999999999999999999999998 77432 1111111111 1235666 999999999998887642
Q ss_pred ---CccEEEEcccccCh----hhhccChHHHHHHHHHHHHHHHHH----HHhcCCCCeEEEEcCccccCCCCCCCCCCCC
Q 012176 193 ---PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEV----CKSVNPQPSIVWASSSSVYGLNTQVPFSESH 261 (469)
Q Consensus 193 ---~~d~Vih~Aa~~~~----~~~~~~~~~~~~~Nv~~~~~ll~a----a~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~ 261 (469)
++|+||||||.... ....++.+..+++|+.++.+++++ +++.+.. +||++||...+.+.
T Consensus 77 ~~~~~d~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~-~iv~~sS~~~~~~~--------- 146 (245)
T 2ph3_A 77 VLGGLDTLVNNAGITRDTLLVRMKDEDWEAVLEANLSAVFRTTREAVKLMMKARFG-RIVNITSVVGILGN--------- 146 (245)
T ss_dssp HHTCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE-EEEEECCTHHHHCC---------
T ss_pred hcCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCC-EEEEEeChhhccCC---------
Confidence 56999999997542 223345567899999996666554 4455654 99999997654321
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceEe
Q 012176 262 RTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARD 338 (469)
Q Consensus 262 ~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 338 (469)
.+...|+.+|.+.|.+++.++.++ |+++++||||.++++..... ...+...+..+.+ ...
T Consensus 147 ---~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~--~~~~~~~~~~~~~------------~~~ 209 (245)
T 2ph3_A 147 ---PGQANYVASKAGLIGFTRAVAKEYAQRGITVNAVAPGFIETEMTERL--PQEVKEAYLKQIP------------AGR 209 (245)
T ss_dssp ---SSBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHTS--CHHHHHHHHHTCT------------TCS
T ss_pred ---CCCcchHHHHHHHHHHHHHHHHHHHHcCeEEEEEEEEeecCcchhhc--CHHHHHHHHhcCC------------CCC
Confidence 235689999999999999998775 89999999999998743211 1122233332222 134
Q ss_pred cccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCC
Q 012176 339 FTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTS 374 (469)
Q Consensus 339 ~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~ 374 (469)
+++++|+|++++.++..+.. ...|++|++.++.
T Consensus 210 ~~~~~dva~~~~~l~~~~~~---~~~G~~~~v~gg~ 242 (245)
T 2ph3_A 210 FGRPEEVAEAVAFLVSEKAG---YITGQTLCVDGGL 242 (245)
T ss_dssp CBCHHHHHHHHHHHTSGGGT---TCCSCEEEESTTC
T ss_pred CcCHHHHHHHHHHHhCcccc---cccCCEEEECCCC
Confidence 78999999999999865421 2346999998874
|
| >2yut_A Putative short-chain oxidoreductase; alpha and beta proteins (A/B), NAD(P)-binding rossmann-fold structural genomics, NPPSFA; HET: NAP; 2.20A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.90 E-value=4.7e-24 Score=196.89 Aligned_cols=191 Identities=18% Similarity=0.142 Sum_probs=148.2
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhcc-CCccEE
Q 012176 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDV-VPFTHV 197 (469)
Q Consensus 119 ~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~-~~~d~V 197 (469)
|+|+||||+|+||++++++|+++ +|++++|+.. ........ .. . +++.+|++|+++++++++. -++|+|
T Consensus 1 k~vlVtGasg~iG~~la~~l~~~--~V~~~~r~~~----~~~~~~~~-~~--~-~~~~~D~~~~~~~~~~~~~~~~id~v 70 (207)
T 2yut_A 1 MRVLITGATGGLGGAFARALKGH--DLLLSGRRAG----ALAELARE-VG--A-RALPADLADELEAKALLEEAGPLDLL 70 (207)
T ss_dssp CEEEEETTTSHHHHHHHHHTTTS--EEEEECSCHH----HHHHHHHH-HT--C-EECCCCTTSHHHHHHHHHHHCSEEEE
T ss_pred CEEEEEcCCcHHHHHHHHHHHhC--CEEEEECCHH----HHHHHHHh-cc--C-cEEEeeCCCHHHHHHHHHhcCCCCEE
Confidence 57999999999999999999998 9999998432 11111111 11 2 8889999999999999982 135999
Q ss_pred EEcccccCh----hhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcCccccCCCCCCCCCCCCCCCCCCChHHHH
Q 012176 198 LHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAAT 273 (469)
Q Consensus 198 ih~Aa~~~~----~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y~~s 273 (469)
|||||.... ....++.+..+++|+.++.++++++++.+.. +||++||..+|.+. .+...|+.+
T Consensus 71 i~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~iv~~sS~~~~~~~------------~~~~~Y~~s 137 (207)
T 2yut_A 71 VHAVGKAGRASVREAGRDLVEEMLAAHLLTAAFVLKHARFQKGA-RAVFFGAYPRYVQV------------PGFAAYAAA 137 (207)
T ss_dssp EECCCCCCCBCSCC---CHHHHHHHHHHHHHHHHHHHCCEEEEE-EEEEECCCHHHHSS------------TTBHHHHHH
T ss_pred EECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHhcCCc-EEEEEcChhhccCC------------CCcchHHHH
Confidence 999997533 2244566789999999999999999766654 99999998887432 356789999
Q ss_pred HHHHHHHHHHHHHH---hCCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceEecccHHHHHHHHH
Q 012176 274 KKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCV 350 (469)
Q Consensus 274 K~~~E~~~~~~~~~---~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~~~~ 350 (469)
|.+.|.+++.++.+ +|++++++|||.++++... +.+.....+++++|+|++++
T Consensus 138 K~a~~~~~~~~~~~~~~~gi~v~~v~pg~v~t~~~~------------------------~~~~~~~~~~~~~dva~~~~ 193 (207)
T 2yut_A 138 KGALEAYLEAARKELLREGVHLVLVRLPAVATGLWA------------------------PLGGPPKGALSPEEAARKVL 193 (207)
T ss_dssp HHHHHHHHHHHHHHHHTTTCEEEEECCCCBCSGGGG------------------------GGTSCCTTCBCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhCCEEEEEecCcccCCCcc------------------------ccCCCCCCCCCHHHHHHHHH
Confidence 99999999999877 5999999999999987411 11233467999999999999
Q ss_pred HHhccC
Q 012176 351 GATGSG 356 (469)
Q Consensus 351 ~~~~~~ 356 (469)
.+++++
T Consensus 194 ~~~~~~ 199 (207)
T 2yut_A 194 EGLFRE 199 (207)
T ss_dssp HHHC--
T ss_pred HHHhCC
Confidence 999875
|
| >3qlj_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.80A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.6e-23 Score=207.26 Aligned_cols=248 Identities=14% Similarity=0.096 Sum_probs=178.7
Q ss_pred CCCCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCC------CCChhHHHHHHHhhc-cCCeEEEEecCCCHHHH
Q 012176 113 PRRPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNS------YYDPSLKRARQKLLQ-KHQVFIVEGDLNDAPLL 185 (469)
Q Consensus 113 ~~~~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~------~~~~~~~~~~~~~~~-~~~v~~v~~Dl~d~~~l 185 (469)
+...++|+||||||+|+||++++++|+++|++|++++|+.. ............... ...+.++.+|++|++++
T Consensus 22 m~~l~gk~vlVTGas~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v 101 (322)
T 3qlj_A 22 MGVVDGRVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSPASGGSAAQSVVDEITAAGGEAVADGSNVADWDQA 101 (322)
T ss_dssp CCTTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBCTTSSBTCTTSHHHHHHHHHHHTTCEEEEECCCTTSHHHH
T ss_pred hcccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCcccccccccccHHHHHHHHHHHHhcCCcEEEEECCCCCHHHH
Confidence 34467899999999999999999999999999999998620 001122222222222 34688999999999999
Q ss_pred HHhhccC-----CccEEEEcccccCh----hhhccChHHHHHHHHHHHHHHHHHHHhcCC---------CCeEEEEcCcc
Q 012176 186 TKLFDVV-----PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCKSVNP---------QPSIVWASSSS 247 (469)
Q Consensus 186 ~~~~~~~-----~~d~Vih~Aa~~~~----~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~---------~~~~V~~SS~~ 247 (469)
+++++.+ ++|+||||||.... ....++++..+++|+.++.++++++..... .++||++||..
T Consensus 102 ~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~~~~~~~g~IV~isS~~ 181 (322)
T 3qlj_A 102 AGLIQTAVETFGGLDVLVNNAGIVRDRMIANTSEEEFDAVIAVHLKGHFATMRHAAAYWRGLSKAGKAVDGRIINTSSGA 181 (322)
T ss_dssp HHHHHHHHHHHSCCCEEECCCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEEECCHH
T ss_pred HHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHccccCCCCCcEEEEEcCHH
Confidence 9888754 67999999997543 223455678999999999999998753311 13899999977
Q ss_pred ccCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeecceecCCCCCCChHHHHHHHHHcCCce
Q 012176 248 VYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTI 324 (469)
Q Consensus 248 vyg~~~~~~~~E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~ 324 (469)
.+.+. .....|+.+|.+.+.+++.++.+ +|+++++|+|| +..+....... .. .
T Consensus 182 ~~~~~------------~~~~~Y~asKaal~~l~~~la~e~~~~gI~vn~v~PG-~~t~~~~~~~~--~~---------~ 237 (322)
T 3qlj_A 182 GLQGS------------VGQGNYSAAKAGIATLTLVGAAEMGRYGVTVNAIAPS-ARTRMTETVFA--EM---------M 237 (322)
T ss_dssp HHHCB------------TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEC-TTSCCSCCSCC--C-----------
T ss_pred HccCC------------CCCccHHHHHHHHHHHHHHHHHHhcccCcEEEEecCC-CCCccchhhhh--hh---------h
Confidence 65322 34568999999999999999887 58999999999 65553321100 00 0
Q ss_pred EEEeeCCCCcceEecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCCcc-----------------cHHHHHHHHHH
Q 012176 325 DVYKTQDDREVARDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTSPV-----------------PVGRLVSILEN 387 (469)
Q Consensus 325 ~~~~~~~~~~~~~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~~v-----------------t~~el~~~i~~ 387 (469)
........++.++|+|++++.++..... ...|++|++.+|... +..|+++.+.+
T Consensus 238 ------~~~~~~~~~~~pedva~~v~~L~s~~~~---~itG~~i~vdGG~~~~~~~~~~~~~~~~~~~~~~~el~~~~~~ 308 (322)
T 3qlj_A 238 ------ATQDQDFDAMAPENVSPLVVWLGSAEAR---DVTGKVFEVEGGKIRVAEGWAHGPQIDKGARWDPAELGPVVAD 308 (322)
T ss_dssp ------------CCTTCGGGTHHHHHHHTSGGGG---GCCSCEEEEETTEEEEEECCEEEEEEECSSCCCGGGHHHHHHH
T ss_pred ------hccccccCCCCHHHHHHHHHHHhCcccc---CCCCCEEEECCCccccCCCcccccccCccCCCCHHHHHHHHHH
Confidence 0012234567899999999998865421 235699999887754 77999999999
Q ss_pred HhCCCc
Q 012176 388 LLNTKA 393 (469)
Q Consensus 388 ~~g~~~ 393 (469)
.+|.+.
T Consensus 309 ~~~~~~ 314 (322)
T 3qlj_A 309 LLGKAR 314 (322)
T ss_dssp HHHHSC
T ss_pred HhhccC
Confidence 998653
|
| >3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.90 E-value=3.7e-23 Score=200.23 Aligned_cols=231 Identities=13% Similarity=0.028 Sum_probs=166.1
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccC--
Q 012176 115 RPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV-- 192 (469)
Q Consensus 115 ~~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~-- 192 (469)
..++|+||||||+|+||++++++|+++|++|++++|+.+ ......... ..++.++.+|++|+++++++++.+
T Consensus 26 ~l~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~----~~~~~~~~~--~~~~~~~~~Dv~d~~~v~~~~~~~~~ 99 (277)
T 3gvc_A 26 DLAGKVAIVTGAGAGIGLAVARRLADEGCHVLCADIDGD----AADAAATKI--GCGAAACRVDVSDEQQIIAMVDACVA 99 (277)
T ss_dssp -CTTCEEEETTTTSTHHHHHHHHHHHTTCEEEEEESSHH----HHHHHHHHH--CSSCEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHH----HHHHHHHHc--CCcceEEEecCCCHHHHHHHHHHHHH
Confidence 367899999999999999999999999999999998532 122222222 357899999999999999888754
Q ss_pred ---CccEEEEcccccCh----hhhccChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEEcCccccCCCCCCCCCCCC
Q 012176 193 ---PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCKS----VNPQPSIVWASSSSVYGLNTQVPFSESH 261 (469)
Q Consensus 193 ---~~d~Vih~Aa~~~~----~~~~~~~~~~~~~Nv~~~~~ll~aa~~----~~~~~~~V~~SS~~vyg~~~~~~~~E~~ 261 (469)
++|+||||||.... ....++++..+++|+.++.++++++.. .+. ++||++||...+.+.
T Consensus 100 ~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~-g~Iv~isS~~~~~~~--------- 169 (277)
T 3gvc_A 100 AFGGVDKLVANAGVVHLASLIDTTVEDFDRVIAINLRGAWLCTKHAAPRMIERGG-GAIVNLSSLAGQVAV--------- 169 (277)
T ss_dssp HHSSCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-EEEEEECCGGGTSCC---------
T ss_pred HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCC-cEEEEEcchhhccCC---------
Confidence 68999999997543 233455678999999999999998754 343 489999997765422
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCC---Ccc
Q 012176 262 RTDQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDD---REV 335 (469)
Q Consensus 262 ~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~~ 335 (469)
.+...|+.+|.+.+.+++.++.+ +|+++++|+||.|++|... ......+-........ ...
T Consensus 170 ---~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~t~~~~----------~~~~~~~~~~~~~~~~~~~~~~ 236 (277)
T 3gvc_A 170 ---GGTGAYGMSKAGIIQLSRITAAELRSSGIRSNTLLPAFVDTPMQQ----------TAMAMFDGALGAGGARSMIARL 236 (277)
T ss_dssp ---TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHH----------HHHTCC------CCHHHHHHHH
T ss_pred ---CCchhHHHHHHHHHHHHHHHHHHhcccCeEEEEEeeCCccCchHH----------HhhhcchhhHHHHhhhhhhhcc
Confidence 34578999999999999998876 5899999999999986211 1111000000000000 011
Q ss_pred eEecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCCccc
Q 012176 336 ARDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTSPVP 377 (469)
Q Consensus 336 ~~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~~vt 377 (469)
...+.+++|+|++++.++..... -..|+++++.+|...+
T Consensus 237 ~~r~~~pedvA~~v~~L~s~~a~---~itG~~i~vdGG~~~~ 275 (277)
T 3gvc_A 237 QGRMAAPEEMAGIVVFLLSDDAS---MITGTTQIADGGTIAA 275 (277)
T ss_dssp HSSCBCHHHHHHHHHHHHSGGGT---TCCSCEEEESTTGGGS
T ss_pred ccCCCCHHHHHHHHHHHcCCccC---CccCcEEEECCcchhc
Confidence 23477899999999998865422 3456999999986543
|
| >2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=6.8e-23 Score=198.11 Aligned_cols=228 Identities=12% Similarity=0.032 Sum_probs=167.6
Q ss_pred CCCCEEEEEcCC--ChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccC-
Q 012176 116 PNGMTVLVTGAA--GFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV- 192 (469)
Q Consensus 116 ~~~~~VlVtGat--G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~- 192 (469)
.++|+|+||||+ |+||++++++|+++|++|++++|+.. ........... ...+.++.+|++|+++++++++.+
T Consensus 4 l~~k~vlVTGas~~~gIG~~~a~~l~~~G~~V~~~~r~~~-~~~~~~~l~~~---~~~~~~~~~D~~~~~~v~~~~~~~~ 79 (275)
T 2pd4_A 4 LKGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNES-LEKRVRPIAQE---LNSPYVYELDVSKEEHFKSLYNSVK 79 (275)
T ss_dssp TTTCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTT-THHHHHHHHHH---TTCCCEEECCTTCHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEeCCHH-HHHHHHHHHHh---cCCcEEEEcCCCCHHHHHHHHHHHH
Confidence 567899999999 99999999999999999999999763 22222222111 124789999999999999888754
Q ss_pred ----CccEEEEcccccCh--------hhhccChHHHHHHHHHHHHHHHHHHHhcCC-CCeEEEEcCccccCCCCCCCCCC
Q 012176 193 ----PFTHVLHLAAQAGV--------RYAMQNPQSYVASNIAGFVNLLEVCKSVNP-QPSIVWASSSSVYGLNTQVPFSE 259 (469)
Q Consensus 193 ----~~d~Vih~Aa~~~~--------~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~-~~~~V~~SS~~vyg~~~~~~~~E 259 (469)
++|+||||||.... ....++.+..+++|+.++.++++++...-. .++||++||.+.+.+.
T Consensus 80 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~~------- 152 (275)
T 2pd4_A 80 KDLGSLDFIVHSVAFAPKEALEGSLLETSKSAFNTAMEISVYSLIELTNTLKPLLNNGASVLTLSYLGSTKYM------- 152 (275)
T ss_dssp HHTSCEEEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECGGGTSBC-------
T ss_pred HHcCCCCEEEECCccCccccCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEEecchhcCCC-------
Confidence 67999999997543 233445668999999999999999876511 1389999997665322
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcce
Q 012176 260 SHRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVA 336 (469)
Q Consensus 260 ~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 336 (469)
.+...|+.+|.+.+.+++.++.++ |+++++|+||.|.++..........+...+....++
T Consensus 153 -----~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~p~------------ 215 (275)
T 2pd4_A 153 -----AHYNVMGLAKAALESAVRYLAVDLGKHHIRVNALSAGPIRTLASSGIADFRMILKWNEINAPL------------ 215 (275)
T ss_dssp -----TTCHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCCCCTTGGGSTTHHHHHHHHHHHSTT------------
T ss_pred -----CCchhhHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCccccchhhhccccHHHHHHHHhcCCc------------
Confidence 345679999999999999998876 899999999999998543221222333333322222
Q ss_pred EecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCC
Q 012176 337 RDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTS 374 (469)
Q Consensus 337 ~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~ 374 (469)
..+.+++|+|++++.++..... ...|+++++.++.
T Consensus 216 ~~~~~p~dva~~~~~l~s~~~~---~~tG~~~~vdgg~ 250 (275)
T 2pd4_A 216 RKNVSLEEVGNAGMYLLSSLSS---GVSGEVHFVDAGY 250 (275)
T ss_dssp SSCCCHHHHHHHHHHHHSGGGT---TCCSCEEEESTTG
T ss_pred CCCCCHHHHHHHHHHHhCcccc---CCCCCEEEECCCc
Confidence 1256789999999998864321 2356899998875
|
| >3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=99.90 E-value=7.6e-23 Score=196.64 Aligned_cols=228 Identities=15% Similarity=0.082 Sum_probs=164.6
Q ss_pred CCCCCEEEEEcCCC-hhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhc--cCCeEEEEecCCCHHHHHHhhcc
Q 012176 115 RPNGMTVLVTGAAG-FVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQ--KHQVFIVEGDLNDAPLLTKLFDV 191 (469)
Q Consensus 115 ~~~~~~VlVtGatG-~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~--~~~v~~v~~Dl~d~~~l~~~~~~ 191 (469)
..++|+||||||+| .||++++++|+++|++|++++|+.+ ........... ..++.++.+|++|.++++++++.
T Consensus 19 ~l~~k~vlITGasg~GIG~~~a~~l~~~G~~V~~~~r~~~----~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~v~~~~~~ 94 (266)
T 3o38_A 19 LLKGKVVLVTAAAGTGIGSTTARRALLEGADVVISDYHER----RLGETRDQLADLGLGRVEAVVCDVTSTEAVDALITQ 94 (266)
T ss_dssp TTTTCEEEESSCSSSSHHHHHHHHHHHTTCEEEEEESCHH----HHHHHHHHHHTTCSSCEEEEECCTTCHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCchHHHHHHHHHHCCCEEEEecCCHH----HHHHHHHHHHhcCCCceEEEEeCCCCHHHHHHHHHH
Confidence 36789999999997 6999999999999999999999543 22222222212 24799999999999999998876
Q ss_pred C-----CccEEEEcccccChh----hhccChHHHHHHHHHHHHHHHHHHHhc----CCCCeEEEEcCccccCCCCCCCCC
Q 012176 192 V-----PFTHVLHLAAQAGVR----YAMQNPQSYVASNIAGFVNLLEVCKSV----NPQPSIVWASSSSVYGLNTQVPFS 258 (469)
Q Consensus 192 ~-----~~d~Vih~Aa~~~~~----~~~~~~~~~~~~Nv~~~~~ll~aa~~~----~~~~~~V~~SS~~vyg~~~~~~~~ 258 (469)
+ ++|+||||||..... ...++.+..+++|+.++.++++++... +..++||++||...+.+.
T Consensus 95 ~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~~~------ 168 (266)
T 3o38_A 95 TVEKAGRLDVLVNNAGLGGQTPVVDMTDEEWDRVLNVTLTSVMRATRAALRYFRGVDHGGVIVNNASVLGWRAQ------ 168 (266)
T ss_dssp HHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTSSCCEEEEEECCGGGTCCC------
T ss_pred HHHHhCCCcEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHcCCC------
Confidence 5 789999999974432 234455678999999999999987653 223489999998766422
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcc
Q 012176 259 ESHRTDQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREV 335 (469)
Q Consensus 259 E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 335 (469)
.+...|+.+|.+.+.+++.++.+ .|+++++|+||.|.++....... ..+...+. ....
T Consensus 169 ------~~~~~Y~~sKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~-~~~~~~~~------------~~~~ 229 (266)
T 3o38_A 169 ------HSQSHYAAAKAGVMALTRCSAIEAVEFGVRINAVSPSIARHKFLEKTSS-SELLDRLA------------SDEA 229 (266)
T ss_dssp ------TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCCCC------------------------------CCT
T ss_pred ------CCCchHHHHHHHHHHHHHHHHHHHHHcCcEEEEEeCCcccchhhhccCc-HHHHHHHH------------hcCC
Confidence 35678999999999999999877 58999999999998874332110 11111111 1223
Q ss_pred eEecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCC
Q 012176 336 ARDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTS 374 (469)
Q Consensus 336 ~~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~ 374 (469)
...+.+++|+|++++.++..... ...|+++++.+|.
T Consensus 230 ~~r~~~~~dva~~i~~l~s~~~~---~~tG~~i~vdgG~ 265 (266)
T 3o38_A 230 FGRAAEPWEVAATIAFLASDYSS---YMTGEVVSVSSQR 265 (266)
T ss_dssp TSSCCCHHHHHHHHHHHHSGGGT---TCCSCEEEESSCC
T ss_pred cCCCCCHHHHHHHHHHHcCcccc---CccCCEEEEcCCc
Confidence 34578999999999998875422 3456999998874
|
| >1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=7.9e-23 Score=196.08 Aligned_cols=219 Identities=17% Similarity=0.084 Sum_probs=162.0
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccC---
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~--- 192 (469)
.++|+|+||||+|+||++++++|+++|++|++++|..+ ........ +. ..+.++.+|++|+++++++++..
T Consensus 5 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~----~~~~~~~~-~~-~~~~~~~~D~~~~~~v~~~~~~~~~~ 78 (260)
T 1nff_A 5 LTGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDE----EGKAMAAE-LA-DAARYVHLDVTQPAQWKAAVDTAVTA 78 (260)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH----HHHHHHHH-TG-GGEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHH----HHHHHHHH-hh-cCceEEEecCCCHHHHHHHHHHHHHH
Confidence 56789999999999999999999999999999998532 11111111 11 25889999999999999988743
Q ss_pred --CccEEEEcccccChh----hhccChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEEcCccccCCCCCCCCCCCCC
Q 012176 193 --PFTHVLHLAAQAGVR----YAMQNPQSYVASNIAGFVNLLEVC----KSVNPQPSIVWASSSSVYGLNTQVPFSESHR 262 (469)
Q Consensus 193 --~~d~Vih~Aa~~~~~----~~~~~~~~~~~~Nv~~~~~ll~aa----~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~ 262 (469)
++|+||||||..... ...++++..+++|+.++.++++++ ++.+.. +||++||...+.+.
T Consensus 79 ~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g-~iv~isS~~~~~~~---------- 147 (260)
T 1nff_A 79 FGGLHVLVNNAGILNIGTIEDYALTEWQRILDVNLTGVFLGIRAVVKPMKEAGRG-SIINISSIEGLAGT---------- 147 (260)
T ss_dssp HSCCCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE-EEEEECCGGGTSCC----------
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCC-EEEEEeehhhcCCC----------
Confidence 569999999974321 233456679999999997766654 445544 99999998876432
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceEec
Q 012176 263 TDQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDF 339 (469)
Q Consensus 263 ~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 339 (469)
.+...|+.+|.+.|.+++.++.+ +|+++++||||.|+++..... ...+. ......+
T Consensus 148 --~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~------------~~~~~-------~~~~~~~ 206 (260)
T 1nff_A 148 --VACHGYTATKFAVRGLTKSTALELGPSGIRVNSIHPGLVKTPMTDWV------------PEDIF-------QTALGRA 206 (260)
T ss_dssp --TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCSGGGTTS------------CTTCS-------CCSSSSC
T ss_pred --CCchhHHHHHHHHHHHHHHHHHHhCccCcEEEEEEeCCCCCCccccc------------hhhHH-------hCccCCC
Confidence 24568999999999999999877 489999999999999843210 00000 0112347
Q ss_pred ccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCCc
Q 012176 340 TYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTSP 375 (469)
Q Consensus 340 v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~~ 375 (469)
.+++|+|++++.++..... ...|++|++.++..
T Consensus 207 ~~~~dvA~~v~~l~s~~~~---~~~G~~~~v~gG~~ 239 (260)
T 1nff_A 207 AEPVEVSNLVVYLASDESS---YSTGAEFVVDGGTV 239 (260)
T ss_dssp BCHHHHHHHHHHHHSGGGT---TCCSCEEEESTTGG
T ss_pred CCHHHHHHHHHHHhCcccc---CCcCCEEEECCCee
Confidence 8899999999998865421 23469999998864
|
| >3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E | Back alignment and structure |
|---|
Probab=99.90 E-value=8.6e-23 Score=194.44 Aligned_cols=224 Identities=12% Similarity=0.044 Sum_probs=167.2
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccC--
Q 012176 115 RPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV-- 192 (469)
Q Consensus 115 ~~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~-- 192 (469)
..++|+++||||+|+||++++++|+++|++|++++|+.+ ........ + ...+..+.+|++|+++++++++..
T Consensus 6 ~l~gk~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~----~~~~~~~~-~-~~~~~~~~~Dv~d~~~v~~~~~~~~~ 79 (248)
T 3op4_A 6 NLEGKVALVTGASRGIGKAIAELLAERGAKVIGTATSES----GAQAISDY-L-GDNGKGMALNVTNPESIEAVLKAITD 79 (248)
T ss_dssp CCTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHH----HHHHHHHH-H-GGGEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHH----HHHHHHHH-h-cccceEEEEeCCCHHHHHHHHHHHHH
Confidence 367899999999999999999999999999999998532 12222122 2 225788999999999999988754
Q ss_pred ---CccEEEEcccccCh----hhhccChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEEcCccccCCCCCCCCCCCC
Q 012176 193 ---PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCKS----VNPQPSIVWASSSSVYGLNTQVPFSESH 261 (469)
Q Consensus 193 ---~~d~Vih~Aa~~~~----~~~~~~~~~~~~~Nv~~~~~ll~aa~~----~~~~~~~V~~SS~~vyg~~~~~~~~E~~ 261 (469)
++|+||||||.... ....++++..+++|+.++.++++++.. .+. ++||++||...+.+.
T Consensus 80 ~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~~-g~iv~isS~~~~~~~--------- 149 (248)
T 3op4_A 80 EFGGVDILVNNAGITRDNLLMRMKEEEWSDIMETNLTSIFRLSKAVLRGMMKKRQ-GRIINVGSVVGTMGN--------- 149 (248)
T ss_dssp HHCCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-EEEEEECCHHHHHCC---------
T ss_pred HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCC-CEEEEEcchhhcCCC---------
Confidence 67999999997543 223456678999999999999998743 444 399999997665322
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceEe
Q 012176 262 RTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARD 338 (469)
Q Consensus 262 ~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 338 (469)
.+...|+.+|.+.+.+++.++.++ |+++++|+||.|..+...... ...........+. ..
T Consensus 150 ---~~~~~Y~asK~a~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~--~~~~~~~~~~~p~------------~r 212 (248)
T 3op4_A 150 ---AGQANYAAAKAGVIGFTKSMAREVASRGVTVNTVAPGFIETDMTKALN--DEQRTATLAQVPA------------GR 212 (248)
T ss_dssp ---TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBSSTTTTTSC--HHHHHHHHHTCTT------------CS
T ss_pred ---CCChHHHHHHHHHHHHHHHHHHHHHHhCeEEEEEeeCCCCCchhhhcC--HHHHHHHHhcCCC------------CC
Confidence 346789999999999999998764 899999999999987544321 1222223333222 34
Q ss_pred cccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCC
Q 012176 339 FTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTS 374 (469)
Q Consensus 339 ~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~ 374 (469)
+.+++|+|++++.++..... ...|+++++.+|.
T Consensus 213 ~~~p~dva~~v~~L~s~~~~---~itG~~i~vdgG~ 245 (248)
T 3op4_A 213 LGDPREIASAVAFLASPEAA---YITGETLHVNGGM 245 (248)
T ss_dssp CBCHHHHHHHHHHHHSGGGT---TCCSCEEEESTTS
T ss_pred CcCHHHHHHHHHHHcCCccC---CccCcEEEECCCe
Confidence 67899999999988865422 3456999998875
|
| >3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis} | Back alignment and structure |
|---|
Probab=99.90 E-value=8.9e-23 Score=198.91 Aligned_cols=234 Identities=16% Similarity=0.042 Sum_probs=167.8
Q ss_pred CCCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccC-
Q 012176 114 RRPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV- 192 (469)
Q Consensus 114 ~~~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~- 192 (469)
...++|+|+||||+|+||++++++|+++|++|++++|+.. ..... ...+ ..++.++.+|++|.++++++++..
T Consensus 12 ~~l~gk~vlVTGas~gIG~~~a~~L~~~G~~V~~~~r~~~----~~~~~-~~~~-~~~~~~~~~Dl~d~~~v~~~~~~~~ 85 (291)
T 3rd5_A 12 PSFAQRTVVITGANSGLGAVTARELARRGATVIMAVRDTR----KGEAA-ARTM-AGQVEVRELDLQDLSSVRRFADGVS 85 (291)
T ss_dssp CCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEEEESCHH----HHHHH-HTTS-SSEEEEEECCTTCHHHHHHHHHTCC
T ss_pred cCCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEECCHH----HHHHH-HHHh-cCCeeEEEcCCCCHHHHHHHHHhcC
Confidence 3478899999999999999999999999999999999532 11111 1111 347999999999999999999876
Q ss_pred CccEEEEcccccChh--hhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcCccccCCCC-CCCCCCCCCCCCCCCh
Q 012176 193 PFTHVLHLAAQAGVR--YAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNT-QVPFSESHRTDQPASL 269 (469)
Q Consensus 193 ~~d~Vih~Aa~~~~~--~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS~~vyg~~~-~~~~~E~~~~~~p~~~ 269 (469)
++|+||||||..... ...++.+..+++|+.++.++++++.....+ +||++||...+.... .....++..+..+...
T Consensus 86 ~iD~lv~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~-riv~isS~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (291)
T 3rd5_A 86 GADVLINNAGIMAVPYALTVDGFESQIGTNHLGHFALTNLLLPRLTD-RVVTVSSMAHWPGRINLEDLNWRSRRYSPWLA 164 (291)
T ss_dssp CEEEEEECCCCCSCCCCBCTTSCBHHHHHHTHHHHHHHHHHGGGEEE-EEEEECCGGGTTCCCCSSCTTCSSSCCCHHHH
T ss_pred CCCEEEECCcCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-heeEeechhhccCCCCcccccccccCCCCcch
Confidence 789999999975432 345677899999999999999999888765 999999988775332 1122222222245678
Q ss_pred HHHHHHHHHHHHHHHHHHh---C--CcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceEecccHHH
Q 012176 270 YAATKKAGEEIAHTYNHIY---G--LALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDD 344 (469)
Q Consensus 270 Y~~sK~~~E~~~~~~~~~~---g--i~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~D 344 (469)
|+.+|.+.+.+++.++.++ | +++++|+||.|..+...... ..+...+ ...+. .+-..+++|
T Consensus 165 Y~~sK~a~~~~~~~la~e~~~~g~~i~v~~v~PG~v~T~~~~~~~--~~~~~~~-~~~~~-----------~~~~~~~~~ 230 (291)
T 3rd5_A 165 YSQSKLANLLFTSELQRRLTAAGSPLRALAAHPGYSHTNLQGASG--RKLGDAL-MSAAT-----------RVVATDADF 230 (291)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCSGGGSCC----------------------------------CHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCCCEEEEEeeCCCCccccccccc--hHHHHHH-HHHHH-----------HHHhCCHHH
Confidence 9999999999999998775 4 99999999999887543210 1111111 11111 122345999
Q ss_pred HHHHHHHHhccCCCCCCCCCceEEEeCCC
Q 012176 345 VVKGCVGATGSGGKKRGPAQLRVYNLGNT 373 (469)
Q Consensus 345 va~~~~~~~~~~~~~~~~~~~~iyni~~~ 373 (469)
+|++++.++..+ ...|++|++.++
T Consensus 231 ~A~~~~~l~~~~-----~~~G~~~~vdgG 254 (291)
T 3rd5_A 231 GARQTLYAASQD-----LPGDSFVGPRFG 254 (291)
T ss_dssp HHHHHHHHHHSC-----CCTTCEEEETTS
T ss_pred HHHHHHHHHcCC-----CCCCceeCCccc
Confidence 999999998774 345688888664
|
| >3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=1.2e-22 Score=189.70 Aligned_cols=203 Identities=13% Similarity=0.147 Sum_probs=149.0
Q ss_pred CCEEEEEcCCChhHHHHHHHHH-HCCCcEEEEeCCCC-CCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCcc
Q 012176 118 GMTVLVTGAAGFVGSHCSLALK-KRGDGVLGLDNFNS-YYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFT 195 (469)
Q Consensus 118 ~~~VlVtGatG~IG~~l~~~L~-~~G~~V~~~~r~~~-~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~d 195 (469)
+++|+||||+|+||++++++|+ ++|++|++++|+.+ .... . .....++.++.+|++|+++++++++++ |
T Consensus 5 mk~vlVtGasg~iG~~~~~~l~~~~g~~V~~~~r~~~~~~~~----~---~~~~~~~~~~~~D~~d~~~~~~~~~~~--d 75 (221)
T 3r6d_A 5 YXYITILGAAGQIAQXLTATLLTYTDMHITLYGRQLKTRIPP----E---IIDHERVTVIEGSFQNPGXLEQAVTNA--E 75 (221)
T ss_dssp CSEEEEESTTSHHHHHHHHHHHHHCCCEEEEEESSHHHHSCH----H---HHTSTTEEEEECCTTCHHHHHHHHTTC--S
T ss_pred EEEEEEEeCCcHHHHHHHHHHHhcCCceEEEEecCccccchh----h---ccCCCceEEEECCCCCHHHHHHHHcCC--C
Confidence 3569999999999999999999 89999999999432 1110 0 013458999999999999999999977 9
Q ss_pred EEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcCccccCCCCCCCCCCCCCCCCCCC-hHHHHH
Q 012176 196 HVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPAS-LYAATK 274 (469)
Q Consensus 196 ~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~-~Y~~sK 274 (469)
+||||||.. |+. ++++++++++.+.+ +||++||.++|+.... +..+... .... .|+.+|
T Consensus 76 ~vv~~ag~~---------------n~~-~~~~~~~~~~~~~~-~iv~iSs~~~~~~~~~-~~~~~~~--~~~~~~y~~~K 135 (221)
T 3r6d_A 76 VVFVGAMES---------------GSD-MASIVKALSRXNIR-RVIGVSMAGLSGEFPV-ALEKWTF--DNLPISYVQGE 135 (221)
T ss_dssp EEEESCCCC---------------HHH-HHHHHHHHHHTTCC-EEEEEEETTTTSCSCH-HHHHHHH--HTSCHHHHHHH
T ss_pred EEEEcCCCC---------------Chh-HHHHHHHHHhcCCC-eEEEEeeceecCCCCc-ccccccc--cccccHHHHHH
Confidence 999999852 455 89999999999876 9999999999874321 1100000 1123 799999
Q ss_pred HHHHHHHHHHHHHhCCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceEecccHHHHHHHHHHHh-
Q 012176 275 KAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGAT- 353 (469)
Q Consensus 275 ~~~E~~~~~~~~~~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~~~~~~~- 353 (469)
..+|.++++ .|+++++||||.|+++.... ...... .+......+++.+|+|++++.++
T Consensus 136 ~~~e~~~~~----~~i~~~~vrpg~v~~~~~~~---------------~~~~~~--~~~~~~~~~~~~~dvA~~~~~l~~ 194 (221)
T 3r6d_A 136 RQARNVLRE----SNLNYTILRLTWLYNDPEXT---------------DYELIP--EGAQFNDAQVSREAVVKAIFDILH 194 (221)
T ss_dssp HHHHHHHHH----SCSEEEEEEECEEECCTTCC---------------CCEEEC--TTSCCCCCEEEHHHHHHHHHHHHT
T ss_pred HHHHHHHHh----CCCCEEEEechhhcCCCCCc---------------ceeecc--CCccCCCceeeHHHHHHHHHHHHH
Confidence 999998865 69999999999999973221 111110 11111224899999999999999
Q ss_pred -ccCCCCCCCCCceEEEeCCCC
Q 012176 354 -GSGGKKRGPAQLRVYNLGNTS 374 (469)
Q Consensus 354 -~~~~~~~~~~~~~iyni~~~~ 374 (469)
.++. ...++.+.++++.
T Consensus 195 ~~~~~----~~~~~~~~i~~~~ 212 (221)
T 3r6d_A 195 AADET----PFHRTSIGVGEPG 212 (221)
T ss_dssp CSCCG----GGTTEEEEEECTT
T ss_pred hcChh----hhhcceeeecCCC
Confidence 7664 2345888887643
|
| >1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.90 E-value=3.1e-23 Score=203.10 Aligned_cols=229 Identities=13% Similarity=0.088 Sum_probs=165.3
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhh------ccCCeEEEEecCCCHHHHHHhh
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLL------QKHQVFIVEGDLNDAPLLTKLF 189 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~------~~~~v~~v~~Dl~d~~~l~~~~ 189 (469)
.++|+|+||||+|+||++++++|+++|++|++++|+.+ .......... ...++.++.+|++|.+++++++
T Consensus 16 l~~k~vlVTGasggIG~~la~~l~~~G~~V~~~~r~~~----~~~~~~~~l~~~~~~~~~~~~~~~~~D~~~~~~v~~~~ 91 (303)
T 1yxm_A 16 LQGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLE----RLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNLV 91 (303)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH----HHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHHH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHH----HHHHHHHHHHhhccccCCccEEEEecCCCCHHHHHHHH
Confidence 67799999999999999999999999999999999542 1222222221 1347999999999999999988
Q ss_pred ccC-----CccEEEEcccccCh----hhhccChHHHHHHHHHHHHHHHHHHHhc----CCCCeEEEEcCccccCCCCCCC
Q 012176 190 DVV-----PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCKSV----NPQPSIVWASSSSVYGLNTQVP 256 (469)
Q Consensus 190 ~~~-----~~d~Vih~Aa~~~~----~~~~~~~~~~~~~Nv~~~~~ll~aa~~~----~~~~~~V~~SS~~vyg~~~~~~ 256 (469)
+.+ ++|+||||||.... ....++.+..+++|+.++.++++++... +. ++||++||...++ .
T Consensus 92 ~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~-~~iv~isS~~~~~-~---- 165 (303)
T 1yxm_A 92 KSTLDTFGKINFLVNNGGGQFLSPAEHISSKGWHAVLETNLTGTFYMCKAVYSSWMKEHG-GSIVNIIVPTKAG-F---- 165 (303)
T ss_dssp HHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHHHC-EEEEEECCCCTTC-C----
T ss_pred HHHHHHcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcC-CeEEEEEeecccC-C----
Confidence 763 57999999996432 1223455678999999999999987652 22 3899999977322 1
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCC--CCCCChHHHHHHHHHcCCceEEEeeCC
Q 012176 257 FSESHRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPW--GRPDMAYFFFTKDILQGKTIDVYKTQD 331 (469)
Q Consensus 257 ~~E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~--~~~~~~~~~~~~~~~~g~~~~~~~~~~ 331 (469)
.....|+.+|.+.+.+.+.++.++ |+++++||||.|+|+. .........+...+....
T Consensus 166 --------~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~--------- 228 (303)
T 1yxm_A 166 --------PLAVHSGAARAGVYNLTKSLALEWACSGIRINCVAPGVIYSQTAVENYGSWGQSFFEGSFQKI--------- 228 (303)
T ss_dssp --------TTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEECSBCCTGGGTTSGGGGGGGGTTGGGGS---------
T ss_pred --------CcchhhHHHHHHHHHHHHHHHHHhcccCeEEEEEecCCcccchhhhhccccchHHHHHHHhcC---------
Confidence 235689999999999999998775 8999999999999983 221100011111111111
Q ss_pred CCcceEecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCCccc
Q 012176 332 DREVARDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTSPVP 377 (469)
Q Consensus 332 ~~~~~~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~~vt 377 (469)
....+.+++|+|++++.++..... ...|++|++.++..++
T Consensus 229 ---p~~~~~~~~dvA~~i~~l~~~~~~---~~~G~~~~v~gG~~~~ 268 (303)
T 1yxm_A 229 ---PAKRIGVPEEVSSVVCFLLSPAAS---FITGQSVDVDGGRSLY 268 (303)
T ss_dssp ---TTSSCBCTHHHHHHHHHHHSGGGT---TCCSCEEEESTTGGGC
T ss_pred ---cccCCCCHHHHHHHHHHHhCcccc---cCCCcEEEECCCeecc
Confidence 112478899999999999865421 2456999999986543
|
| >4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum} | Back alignment and structure |
|---|
Probab=99.90 E-value=5.1e-24 Score=205.65 Aligned_cols=231 Identities=13% Similarity=0.054 Sum_probs=169.2
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhh-ccCCeEEEEecCCCHHHHHHhhccC-
Q 012176 115 RPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLL-QKHQVFIVEGDLNDAPLLTKLFDVV- 192 (469)
Q Consensus 115 ~~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~v~~v~~Dl~d~~~l~~~~~~~- 192 (469)
..++|+||||||+|+||++++++|+++|++|++++|+.+ ...+...... ...++.++.+|++|+++++++++..
T Consensus 23 ~l~gk~~lVTGas~gIG~aia~~la~~G~~V~~~~r~~~----~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~ 98 (271)
T 4ibo_A 23 DLGGRTALVTGSSRGLGRAMAEGLAVAGARILINGTDPS----RVAQTVQEFRNVGHDAEAVAFDVTSESEIIEAFARLD 98 (271)
T ss_dssp CCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEECCSCHH----HHHHHHHHHHHTTCCEEECCCCTTCHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHH----HHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHH
Confidence 367899999999999999999999999999999998543 2222222221 1347899999999999999988754
Q ss_pred ----CccEEEEcccccChh----hhccChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEEcCccccCCCCCCCCCCC
Q 012176 193 ----PFTHVLHLAAQAGVR----YAMQNPQSYVASNIAGFVNLLEVCKS----VNPQPSIVWASSSSVYGLNTQVPFSES 260 (469)
Q Consensus 193 ----~~d~Vih~Aa~~~~~----~~~~~~~~~~~~Nv~~~~~ll~aa~~----~~~~~~~V~~SS~~vyg~~~~~~~~E~ 260 (469)
++|+||||||..... ...++++..+++|+.++.++++++.. .+. ++||++||...+.+.
T Consensus 99 ~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~-g~iV~isS~~~~~~~-------- 169 (271)
T 4ibo_A 99 EQGIDVDILVNNAGIQFRKPMIELETADWQRVIDTNLTSAFMIGREAAKRMIPRGY-GKIVNIGSLTSELAR-------- 169 (271)
T ss_dssp HHTCCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-EEEEEECCGGGTSBC--------
T ss_pred HHCCCCCEEEECCCCCCCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCC-cEEEEEccHHhCCCC--------
Confidence 679999999974322 23455667899999999999887654 344 399999997765322
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceE
Q 012176 261 HRTDQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVAR 337 (469)
Q Consensus 261 ~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 337 (469)
.+...|+.+|.+.+.+++.++.+ +|+++++|+||.|.++........+.+...+....++ .
T Consensus 170 ----~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~p~------------~ 233 (271)
T 4ibo_A 170 ----ATVAPYTVAKGGIKMLTRAMAAEWAQYGIQANAIGPGYMLTDMNQALIDNPEFDAWVKARTPA------------K 233 (271)
T ss_dssp ----TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSGGGHHHHHCHHHHHHHHHHSTT------------C
T ss_pred ----CCchhHHHHHHHHHHHHHHHHHHHhhhCeEEEEEEeccEeCcchhhcccCHHHHHHHHhcCCC------------C
Confidence 34578999999999999999877 4899999999999987432100001233333333332 2
Q ss_pred ecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCCccc
Q 012176 338 DFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTSPVP 377 (469)
Q Consensus 338 ~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~~vt 377 (469)
.+..++|+|++++.++..... -..|+++++.+|...+
T Consensus 234 r~~~pedva~~v~~L~s~~~~---~itG~~i~vdGG~~~~ 270 (271)
T 4ibo_A 234 RWGKPQELVGTAVFLSASASD---YVNGQIIYVDGGMLSV 270 (271)
T ss_dssp SCBCGGGGHHHHHHHHSGGGT---TCCSCEEEESTTGGGB
T ss_pred CCcCHHHHHHHHHHHhCcccc---CCCCcEEEECCCeecc
Confidence 356789999999988765422 3456999999986543
|
| >1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=6.4e-23 Score=195.99 Aligned_cols=224 Identities=13% Similarity=0.031 Sum_probs=160.9
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccC---
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~--- 192 (469)
.++|+|+||||+|+||++++++|+++|++|++++|+.+ ........ + ..++.++.+|++|+++++++++..
T Consensus 3 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~----~~~~~~~~-~-~~~~~~~~~D~~~~~~~~~~~~~~~~~ 76 (254)
T 1hdc_A 3 LSGKTVIITGGARGLGAEAARQAVAAGARVVLADVLDE----EGAATARE-L-GDAARYQHLDVTIEEDWQRVVAYAREE 76 (254)
T ss_dssp CCCSEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH----HHHHHHHT-T-GGGEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHH----HHHHHHHH-h-CCceeEEEecCCCHHHHHHHHHHHHHH
Confidence 56789999999999999999999999999999998532 11111111 1 236889999999999999888743
Q ss_pred --CccEEEEcccccCh----hhhccChHHHHHHHHHHHHHHHHH----HHhcCCCCeEEEEcCccccCCCCCCCCCCCCC
Q 012176 193 --PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEV----CKSVNPQPSIVWASSSSVYGLNTQVPFSESHR 262 (469)
Q Consensus 193 --~~d~Vih~Aa~~~~----~~~~~~~~~~~~~Nv~~~~~ll~a----a~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~ 262 (469)
++|+||||||.... ....++++..+++|+.++..++++ +++.+.. +||++||...+.+.
T Consensus 77 ~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g-~iv~isS~~~~~~~---------- 145 (254)
T 1hdc_A 77 FGSVDGLVNNAGISTGMFLETESVERFRKVVEINLTGVFIGMKTVIPAMKDAGGG-SIVNISSAAGLMGL---------- 145 (254)
T ss_dssp HSCCCEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE-EEEEECCGGGTSCC----------
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCC-EEEEECchhhccCC----------
Confidence 57999999997432 123345667899999999865554 4555544 99999998776432
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceEec
Q 012176 263 TDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDF 339 (469)
Q Consensus 263 ~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 339 (469)
.+...|+.+|.+.+.+++.++.++ |+++++||||.|+++.. .... ....... ........+
T Consensus 146 --~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~----------~~~~-~~~~~~~---~~~~p~~~~ 209 (254)
T 1hdc_A 146 --ALTSSYGASKWGVRGLSKLAAVELGTDRIRVNSVHPGMTYTPMT----------AETG-IRQGEGN---YPNTPMGRV 209 (254)
T ss_dssp --TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHH----------HHHT-CCCSTTS---CTTSTTSSC
T ss_pred --CCchhHHHHHHHHHHHHHHHHHHhhhcCeEEEEEecccCcCccc----------cccc-hhHHHHH---HhcCCCCCC
Confidence 345789999999999999998764 89999999999998621 1110 0000000 001111236
Q ss_pred c-cHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCCc
Q 012176 340 T-YIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTSP 375 (469)
Q Consensus 340 v-~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~~ 375 (469)
. +++|+|++++.++..+.. ...|+++++.++..
T Consensus 210 ~~~~~dvA~~v~~l~s~~~~---~~tG~~~~vdgG~~ 243 (254)
T 1hdc_A 210 GNEPGEIAGAVVKLLSDTSS---YVTGAELAVDGGWT 243 (254)
T ss_dssp B-CHHHHHHHHHHHHSGGGT---TCCSCEEEESTTTT
T ss_pred CCCHHHHHHHHHHHhCchhc---CCCCCEEEECCCcc
Confidence 7 899999999998865421 24569999988753
|
| >3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=1.2e-22 Score=198.23 Aligned_cols=232 Identities=11% Similarity=0.007 Sum_probs=168.9
Q ss_pred CCCCCCEEEEEcCCCh--hHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhcc
Q 012176 114 RRPNGMTVLVTGAAGF--VGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDV 191 (469)
Q Consensus 114 ~~~~~~~VlVtGatG~--IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~ 191 (469)
...++|+||||||+|+ ||++++++|+++|++|++++|+.. .............++.++.+|++|.++++++++.
T Consensus 27 ~~l~gk~~lVTGasg~~GIG~aia~~la~~G~~V~~~~r~~~----~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~ 102 (293)
T 3grk_A 27 GLLQGKRGLILGVANNRSIAWGIAKAAREAGAELAFTYQGDA----LKKRVEPLAEELGAFVAGHCDVADAASIDAVFET 102 (293)
T ss_dssp CTTTTCEEEEECCCSSSSHHHHHHHHHHHTTCEEEEEECSHH----HHHHHHHHHHHHTCEEEEECCTTCHHHHHHHHHH
T ss_pred ccCCCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEEcCCHH----HHHHHHHHHHhcCCceEEECCCCCHHHHHHHHHH
Confidence 3467899999999988 999999999999999999998521 1111111111224688999999999999988875
Q ss_pred C-----CccEEEEcccccCh--------hhhccChHHHHHHHHHHHHHHHHHHHhcCC-CCeEEEEcCccccCCCCCCCC
Q 012176 192 V-----PFTHVLHLAAQAGV--------RYAMQNPQSYVASNIAGFVNLLEVCKSVNP-QPSIVWASSSSVYGLNTQVPF 257 (469)
Q Consensus 192 ~-----~~d~Vih~Aa~~~~--------~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~-~~~~V~~SS~~vyg~~~~~~~ 257 (469)
+ ++|+||||||.... ....++++..+++|+.++.++++++..... .++||++||...+.+.
T Consensus 103 ~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~Iv~isS~~~~~~~----- 177 (293)
T 3grk_A 103 LEKKWGKLDFLVHAIGFSDKDELTGRYIDTSEANFTNTMLISVYSLTAVSRRAEKLMADGGSILTLTYYGAEKVM----- 177 (293)
T ss_dssp HHHHTSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCEEEEEEECGGGTSBC-----
T ss_pred HHHhcCCCCEEEECCccCCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEEEeehhhccCC-----
Confidence 4 68999999997642 223455667999999999999999876432 2489999998776532
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCc
Q 012176 258 SESHRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDRE 334 (469)
Q Consensus 258 ~E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 334 (469)
.....|+.+|.+.+.+++.++.++ |+++++|+||.|.++..........+........++
T Consensus 178 -------~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~p~---------- 240 (293)
T 3grk_A 178 -------PNYNVMGVAKAALEASVKYLAVDLGPQNIRVNAISAGPIKTLAASGIGDFRYILKWNEYNAPL---------- 240 (293)
T ss_dssp -------TTTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCCCC------CCHHHHHHHHHHHSTT----------
T ss_pred -------CchHHHHHHHHHHHHHHHHHHHHHhHhCCEEEEEecCCCcchhhhcccchHHHHHHHHhcCCC----------
Confidence 345789999999999999998774 899999999999997544322223333333333332
Q ss_pred ceEecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCCcc
Q 012176 335 VARDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTSPV 376 (469)
Q Consensus 335 ~~~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~~v 376 (469)
..+..++|+|++++.++..... ...|+++++.+|..+
T Consensus 241 --~r~~~pedvA~~v~~L~s~~~~---~itG~~i~vdGG~~~ 277 (293)
T 3grk_A 241 --RRTVTIDEVGDVGLYFLSDLSR---SVTGEVHHADSGYHV 277 (293)
T ss_dssp --SSCCCHHHHHHHHHHHHSGGGT---TCCSCEEEESTTGGG
T ss_pred --CCCCCHHHHHHHHHHHcCcccc---CCcceEEEECCCccc
Confidence 2356789999999998865422 345699999998643
|
| >2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.90 E-value=7.5e-23 Score=196.12 Aligned_cols=236 Identities=12% Similarity=0.047 Sum_probs=161.7
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhc---cCCeEEEEecCCCHHHHHHhhccC
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQ---KHQVFIVEGDLNDAPLLTKLFDVV 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~---~~~v~~v~~Dl~d~~~l~~~~~~~ 192 (469)
.++|+|+||||+|+||++++++|+++|++|++++|+.+ ........... ..++.++.+|++|+++++++++.+
T Consensus 5 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~----~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~ 80 (260)
T 2z1n_A 5 IQGKLAVVTAGSSGLGFASALELARNGARLLLFSRNRE----KLEAAASRIASLVSGAQVDIVAGDIREPGDIDRLFEKA 80 (260)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH----HHHHHHHHHHHHSTTCCEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHH----HHHHHHHHHHhcCCCCeEEEEEccCCCHHHHHHHHHHH
Confidence 56789999999999999999999999999999999542 11111111111 227899999999999998888731
Q ss_pred ----CccEEEEcccccCh----hhhccChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEEcCccccCCCCCCCCCCC
Q 012176 193 ----PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCK----SVNPQPSIVWASSSSVYGLNTQVPFSES 260 (469)
Q Consensus 193 ----~~d~Vih~Aa~~~~----~~~~~~~~~~~~~Nv~~~~~ll~aa~----~~~~~~~~V~~SS~~vyg~~~~~~~~E~ 260 (469)
++|+||||||.... ....++++..+++|+.++..+++++. +.+.. +||++||...+.+.
T Consensus 81 ~~~~gid~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g-~iv~isS~~~~~~~-------- 151 (260)
T 2z1n_A 81 RDLGGADILVYSTGGPRPGRFMELGVEDWDESYRLLARSAVWVGRRAAEQMVEKGWG-RMVYIGSVTLLRPW-------- 151 (260)
T ss_dssp HHTTCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCE-EEEEECCGGGTSCC--------
T ss_pred HHhcCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCc-EEEEECchhhcCCC--------
Confidence 36999999996432 12334566889999999977777653 44544 99999998877532
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceE
Q 012176 261 HRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVAR 337 (469)
Q Consensus 261 ~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 337 (469)
.+...|+.+|.+.+.+++.++.++ |+++++||||.|+++........................ .......
T Consensus 152 ----~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~p~~ 224 (260)
T 2z1n_A 152 ----QDLALSNIMRLPVIGVVRTLALELAPHGVTVNAVLPSLILTDRVRSLAEERARRSGITVEEALKSM---ASRIPMG 224 (260)
T ss_dssp ----TTBHHHHHHTHHHHHHHHHHHHHHGGGTEEEEEEEECHHHHCCCC--------------------------CCTTS
T ss_pred ----CCCchhHHHHHHHHHHHHHHHHHHhhhCeEEEEEEECCcccchhhhhhhhhhcccCCcHHHHHHHH---HhcCCCC
Confidence 345689999999999999998775 899999999999998644110000000000000000000 0011123
Q ss_pred ecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCC
Q 012176 338 DFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTS 374 (469)
Q Consensus 338 ~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~ 374 (469)
.+.+++|+|++++.++..... ...|+++++.++.
T Consensus 225 r~~~~~dva~~v~~l~s~~~~---~~tG~~i~vdGG~ 258 (260)
T 2z1n_A 225 RVGKPEELASVVAFLASEKAS---FITGAVIPVDGGA 258 (260)
T ss_dssp SCCCHHHHHHHHHHHTSGGGT---TCCSCEEEESTTT
T ss_pred CccCHHHHHHHHHHHhCcccc---CCCCCEEEeCCCc
Confidence 477999999999999865422 3456899998874
|
| >3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.8e-23 Score=202.60 Aligned_cols=227 Identities=14% Similarity=0.069 Sum_probs=165.4
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhc-cCCeEEEEecCCCHHHHHHhhccC--
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQ-KHQVFIVEGDLNDAPLLTKLFDVV-- 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~v~~v~~Dl~d~~~l~~~~~~~-- 192 (469)
.++|+||||||+|+||++++++|+++|++|++++|+.+ ........... ...+.++.+|++|+++++++++.+
T Consensus 22 ~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~----~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~ 97 (279)
T 3sju_A 22 SRPQTAFVTGVSSGIGLAVARTLAARGIAVYGCARDAK----NVSAAVDGLRAAGHDVDGSSCDVTSTDEVHAAVAAAVE 97 (279)
T ss_dssp ---CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHH----HHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHH----HHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHH
Confidence 56789999999999999999999999999999999543 22222222221 347899999999999999888754
Q ss_pred ---CccEEEEcccccChh----hhccChHHHHHHHHHHHHHHHHHHHh------cCCCCeEEEEcCccccCCCCCCCCCC
Q 012176 193 ---PFTHVLHLAAQAGVR----YAMQNPQSYVASNIAGFVNLLEVCKS------VNPQPSIVWASSSSVYGLNTQVPFSE 259 (469)
Q Consensus 193 ---~~d~Vih~Aa~~~~~----~~~~~~~~~~~~Nv~~~~~ll~aa~~------~~~~~~~V~~SS~~vyg~~~~~~~~E 259 (469)
++|+||||||..... ...++.+..+++|+.++.++++++.. .+. ++||++||...+.+.
T Consensus 98 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~-g~iV~isS~~~~~~~------- 169 (279)
T 3sju_A 98 RFGPIGILVNSAGRNGGGETADLDDALWADVLDTNLTGVFRVTREVLRAGGMREAGW-GRIVNIASTGGKQGV------- 169 (279)
T ss_dssp HHCSCCEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSSHHHHTC-EEEEEECCGGGTSCC-------
T ss_pred HcCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHhchhhHhhcCC-cEEEEECChhhccCC-------
Confidence 689999999975432 23344567899999999999998754 343 399999998776432
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeecceecCCCCC---------CChHHHHHHHHHcCCceEEE
Q 012176 260 SHRTDQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRP---------DMAYFFFTKDILQGKTIDVY 327 (469)
Q Consensus 260 ~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~Gp~~~~---------~~~~~~~~~~~~~g~~~~~~ 327 (469)
.+...|+.+|.+.+.+++.++.+ +|+++++|+||.|.++.... ......+...+....++
T Consensus 170 -----~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~--- 241 (279)
T 3sju_A 170 -----MYAAPYTASKHGVVGFTKSVGFELAKTGITVNAVCPGYVETPMAERVREGYARHWGVTEQEVHERFNAKIPL--- 241 (279)
T ss_dssp -----TTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEESSBCSHHHHHHHHSCCSSSCCCHHHHHHHHHTTCTT---
T ss_pred -----CCChhHHHHHHHHHHHHHHHHHHHHhhCcEEEEEeeCcccchHHHHHHhhhhhcccCChHHHHHHHHhcCCC---
Confidence 34578999999999999999877 58999999999998862110 00112233333333222
Q ss_pred eeCCCCcceEecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCC
Q 012176 328 KTQDDREVARDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTS 374 (469)
Q Consensus 328 ~~~~~~~~~~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~ 374 (469)
..+.+++|+|++++.++..... -..|+++++.+|.
T Consensus 242 ---------~r~~~pedvA~~v~~L~s~~a~---~itG~~i~vdGG~ 276 (279)
T 3sju_A 242 ---------GRYSTPEEVAGLVGYLVTDAAA---SITAQALNVCGGL 276 (279)
T ss_dssp ---------SSCBCHHHHHHHHHHHTSSGGG---GCCSCEEEESTTC
T ss_pred ---------CCCCCHHHHHHHHHHHhCcccc---CcCCcEEEECCCc
Confidence 3467899999999998865421 2456999998875
|
| >1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold, rossmann fold, oxidoreductase; HET: NAP; 2.30A {Brassica napus} SCOP: c.2.1.2 PDB: 2cdh_G | Back alignment and structure |
|---|
Probab=99.90 E-value=2e-23 Score=197.70 Aligned_cols=224 Identities=15% Similarity=0.036 Sum_probs=161.4
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHCCCcEEEE-eCCCCCCChhHHHHHHHhh-ccCCeEEEEecCCCHHHHHHhhccC---
Q 012176 118 GMTVLVTGAAGFVGSHCSLALKKRGDGVLGL-DNFNSYYDPSLKRARQKLL-QKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (469)
Q Consensus 118 ~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~-~r~~~~~~~~~~~~~~~~~-~~~~v~~v~~Dl~d~~~l~~~~~~~--- 192 (469)
+|+|+||||+|+||++++++|+++|++|+++ +|+.. .......... ...++.++.+|++|+++++++++..
T Consensus 1 ~k~vlVTGasggiG~~la~~l~~~G~~v~~~~~r~~~----~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 76 (244)
T 1edo_A 1 SPVVVVTGASRGIGKAIALSLGKAGCKVLVNYARSAK----AAEEVSKQIEAYGGQAITFGGDVSKEADVEAMMKTAIDA 76 (244)
T ss_dssp CCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHH----HHHHHHHHHHHHTCEEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHH----HHHHHHHHHHhcCCcEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 4789999999999999999999999999995 66432 1111111111 1346889999999999999988753
Q ss_pred --CccEEEEcccccCh----hhhccChHHHHHHHHHHHHHHHHHHHhc----CCCCeEEEEcCccccCCCCCCCCCCCCC
Q 012176 193 --PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCKSV----NPQPSIVWASSSSVYGLNTQVPFSESHR 262 (469)
Q Consensus 193 --~~d~Vih~Aa~~~~----~~~~~~~~~~~~~Nv~~~~~ll~aa~~~----~~~~~~V~~SS~~vyg~~~~~~~~E~~~ 262 (469)
++|+||||||.... ....++++..+++|+.++.++++++... +.. +||++||...+.+.
T Consensus 77 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~-~iv~~sS~~~~~~~---------- 145 (244)
T 1edo_A 77 WGTIDVVVNNAGITRDTLLIRMKKSQWDEVIDLNLTGVFLCTQAATKIMMKKRKG-RIINIASVVGLIGN---------- 145 (244)
T ss_dssp SSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE-EEEEECCTHHHHCC----------
T ss_pred cCCCCEEEECCCCCCCcCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCC-EEEEECChhhcCCC----------
Confidence 57999999997542 1233455678999999999999987653 443 99999997654321
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceEec
Q 012176 263 TDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDF 339 (469)
Q Consensus 263 ~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 339 (469)
.+...|+.+|.+.+.+++.++.++ |++++++|||.|+++..... ...+...+....+ ...+
T Consensus 146 --~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~--~~~~~~~~~~~~~------------~~~~ 209 (244)
T 1edo_A 146 --IGQANYAAAKAGVIGFSKTAAREGASRNINVNVVCPGFIASDMTAKL--GEDMEKKILGTIP------------LGRT 209 (244)
T ss_dssp --TTCHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBCSHHHHTT--CHHHHHHHHTSCT------------TCSC
T ss_pred --CCCccchhhHHHHHHHHHHHHHHhhhcCCEEEEEeeCccccchhhhc--ChHHHHHHhhcCC------------CCCC
Confidence 245789999999999999988764 89999999999998743211 1122233332222 1247
Q ss_pred ccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCC
Q 012176 340 TYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTS 374 (469)
Q Consensus 340 v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~ 374 (469)
++++|+|++++.++.++.. ....|++|++.++.
T Consensus 210 ~~~~dva~~~~~l~~~~~~--~~~~G~~~~v~gG~ 242 (244)
T 1edo_A 210 GQPENVAGLVEFLALSPAA--SYITGQAFTIDGGI 242 (244)
T ss_dssp BCHHHHHHHHHHHHHCSGG--GGCCSCEEEESTTT
T ss_pred CCHHHHHHHHHHHhCCCcc--CCcCCCEEEeCCCc
Confidence 8999999999998854321 12346899998874
|
| >2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.90 E-value=1e-22 Score=197.83 Aligned_cols=226 Identities=12% Similarity=0.056 Sum_probs=163.3
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhc-cCCeEEEEecCCCHHHHHHhhccC-
Q 012176 115 RPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQ-KHQVFIVEGDLNDAPLLTKLFDVV- 192 (469)
Q Consensus 115 ~~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~v~~v~~Dl~d~~~l~~~~~~~- 192 (469)
..++|+|+||||+|+||+++++.|+++|++|++++|+.+ ........... ..++.++.+|++|.++++++++..
T Consensus 41 ~l~~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~~----~~~~~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~~~~ 116 (285)
T 2c07_A 41 CGENKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQK----SCDSVVDEIKSFGYESSGYAGDVSKKEEISEVINKIL 116 (285)
T ss_dssp CCSSCEEEEESTTSHHHHHHHHHHTTTSSEEEEEESSHH----HHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCcHHHHHHHHHHHHcCCEEEEEcCCHH----HHHHHHHHHHhcCCceeEEECCCCCHHHHHHHHHHHH
Confidence 356789999999999999999999999999999887432 11221222211 346889999999999999888643
Q ss_pred ----CccEEEEcccccCh----hhhccChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEEcCccccCCCCCCCCCCC
Q 012176 193 ----PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCK----SVNPQPSIVWASSSSVYGLNTQVPFSES 260 (469)
Q Consensus 193 ----~~d~Vih~Aa~~~~----~~~~~~~~~~~~~Nv~~~~~ll~aa~----~~~~~~~~V~~SS~~vyg~~~~~~~~E~ 260 (469)
++|+||||||.... ....++++..+++|+.++.++++++. +.+.. +||++||...+.+.
T Consensus 117 ~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~-~iv~isS~~~~~~~-------- 187 (285)
T 2c07_A 117 TEHKNVDILVNNAGITRDNLFLRMKNDEWEDVLRTNLNSLFYITQPISKRMINNRYG-RIINISSIVGLTGN-------- 187 (285)
T ss_dssp HHCSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTCE-EEEEECCTHHHHCC--------
T ss_pred HhcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCC-EEEEECChhhccCC--------
Confidence 57999999997532 12344566889999999888888765 34544 99999998665322
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceE
Q 012176 261 HRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVAR 337 (469)
Q Consensus 261 ~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 337 (469)
.+...|+.+|.+.|.+++.++.++ |+++++||||.|.++..... ...+...+....+. .
T Consensus 188 ----~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~--~~~~~~~~~~~~~~------------~ 249 (285)
T 2c07_A 188 ----VGQANYSSSKAGVIGFTKSLAKELASRNITVNAIAPGFISSDMTDKI--SEQIKKNIISNIPA------------G 249 (285)
T ss_dssp ----TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCC-----C--CHHHHHHHHTTCTT------------S
T ss_pred ----CCCchHHHHHHHHHHHHHHHHHHHHHhCcEEEEEEeCcEecCchhhc--CHHHHHHHHhhCCC------------C
Confidence 245689999999999999998764 89999999999998754321 12233333332221 2
Q ss_pred ecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCC
Q 012176 338 DFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTS 374 (469)
Q Consensus 338 ~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~ 374 (469)
.+++++|+|++++.++..+.. ...|++|++.++.
T Consensus 250 ~~~~~~dvA~~~~~l~~~~~~---~~~G~~i~v~gG~ 283 (285)
T 2c07_A 250 RMGTPEEVANLACFLSSDKSG---YINGRVFVIDGGL 283 (285)
T ss_dssp SCBCHHHHHHHHHHHHSGGGT---TCCSCEEEESTTS
T ss_pred CCCCHHHHHHHHHHHhCCCcC---CCCCCEEEeCCCc
Confidence 378999999999998875421 2356899998874
|
| >4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=8e-23 Score=197.05 Aligned_cols=226 Identities=15% Similarity=0.087 Sum_probs=167.4
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhh-ccCCeEEEEecCCCHHHHHHhhccC--
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLL-QKHQVFIVEGDLNDAPLLTKLFDVV-- 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~v~~v~~Dl~d~~~l~~~~~~~-- 192 (469)
.++|+||||||+|+||++++++|+++|++|++++|.... .......... ...++.++.+|++|+++++++++.+
T Consensus 26 l~~k~vlVTGas~gIG~aia~~la~~G~~V~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~D~~d~~~v~~~~~~~~~ 102 (269)
T 4dmm_A 26 LTDRIALVTGASRGIGRAIALELAAAGAKVAVNYASSAG---AADEVVAAIAAAGGEAFAVKADVSQESEVEALFAAVIE 102 (269)
T ss_dssp TTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHH---HHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCChH---HHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHH
Confidence 578999999999999999999999999999999884321 1111111111 1347899999999999999988754
Q ss_pred ---CccEEEEcccccCh----hhhccChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEEcCccccCCCCCCCCCCCC
Q 012176 193 ---PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCK----SVNPQPSIVWASSSSVYGLNTQVPFSESH 261 (469)
Q Consensus 193 ---~~d~Vih~Aa~~~~----~~~~~~~~~~~~~Nv~~~~~ll~aa~----~~~~~~~~V~~SS~~vyg~~~~~~~~E~~ 261 (469)
++|+||||||.... ....++++..+++|+.++.++++++. +.+.. +||++||...+.+.
T Consensus 103 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g-~iv~isS~~~~~~~--------- 172 (269)
T 4dmm_A 103 RWGRLDVLVNNAGITRDTLLLRMKRDDWQSVLDLNLGGVFLCSRAAAKIMLKQRSG-RIINIASVVGEMGN--------- 172 (269)
T ss_dssp HHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCC-EEEEECCHHHHHCC---------
T ss_pred HcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCc-EEEEECchhhcCCC---------
Confidence 67999999997543 22345567899999999999999863 34443 99999997665322
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceEe
Q 012176 262 RTDQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARD 338 (469)
Q Consensus 262 ~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 338 (469)
.....|+.+|.+.+.+++.++.+ .|+++++|+||.|.++.... .....+....++ ..
T Consensus 173 ---~~~~~Y~asK~a~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~-----~~~~~~~~~~p~------------~r 232 (269)
T 4dmm_A 173 ---PGQANYSAAKAGVIGLTKTVAKELASRGITVNAVAPGFIATDMTSE-----LAAEKLLEVIPL------------GR 232 (269)
T ss_dssp ---TTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBTTSCSCH-----HHHHHHGGGCTT------------SS
T ss_pred ---CCchhHHHHHHHHHHHHHHHHHHHhhhCcEEEEEEECCCcCccccc-----ccHHHHHhcCCC------------CC
Confidence 34578999999999999999876 48999999999999885442 111222222222 34
Q ss_pred cccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCCcc
Q 012176 339 FTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTSPV 376 (469)
Q Consensus 339 ~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~~v 376 (469)
+.+++|+|++++.++..+.. .-..|++|++.+|..+
T Consensus 233 ~~~~~dvA~~v~~l~s~~~~--~~itG~~i~vdGG~~~ 268 (269)
T 4dmm_A 233 YGEAAEVAGVVRFLAADPAA--AYITGQVINIDGGLVM 268 (269)
T ss_dssp CBCHHHHHHHHHHHHHCGGG--GGCCSCEEEESTTSCC
T ss_pred CCCHHHHHHHHHHHhCCccc--CCCcCCEEEECCCeec
Confidence 67899999999999876311 0234699999988654
|
| >3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A | Back alignment and structure |
|---|
Probab=99.90 E-value=4.7e-23 Score=198.35 Aligned_cols=226 Identities=15% Similarity=0.076 Sum_probs=163.7
Q ss_pred CCCCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccC
Q 012176 113 PRRPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV 192 (469)
Q Consensus 113 ~~~~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~ 192 (469)
+...++|+||||||+|+||++++++|+++|++|++++|+.+ ........ . ..++.++.+|++|+++++++++..
T Consensus 22 m~~l~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~----~~~~~~~~-~-~~~~~~~~~Dv~d~~~v~~~~~~~ 95 (266)
T 3grp_A 22 MFKLTGRKALVTGATGGIGEAIARCFHAQGAIVGLHGTRED----KLKEIAAD-L-GKDVFVFSANLSDRKSIKQLAEVA 95 (266)
T ss_dssp TTCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHH----HHHHHHHH-H-CSSEEEEECCTTSHHHHHHHHHHH
T ss_pred hhccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHH----HHHHHHHH-h-CCceEEEEeecCCHHHHHHHHHHH
Confidence 34477899999999999999999999999999999998532 12222111 1 347999999999999999888753
Q ss_pred -----CccEEEEcccccCh----hhhccChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEEcCccccCCCCCCCCCC
Q 012176 193 -----PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVC----KSVNPQPSIVWASSSSVYGLNTQVPFSE 259 (469)
Q Consensus 193 -----~~d~Vih~Aa~~~~----~~~~~~~~~~~~~Nv~~~~~ll~aa----~~~~~~~~~V~~SS~~vyg~~~~~~~~E 259 (469)
++|+||||||.... ....++++..+++|+.++..+++++ ++.+.. +||++||...+.+.
T Consensus 96 ~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g-~Iv~isS~~~~~~~------- 167 (266)
T 3grp_A 96 EREMEGIDILVNNAGITRDGLFVRMQDQDWDDVLAVNLTAASTLTRELIHSMMRRRYG-RIINITSIVGVVGN------- 167 (266)
T ss_dssp HHHHTSCCEEEECCCCC-----CCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE-EEEEECCC-------------
T ss_pred HHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc-EEEEECCHHHcCCC-------
Confidence 67999999997542 2334566788999999977777765 344543 99999997665322
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcce
Q 012176 260 SHRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVA 336 (469)
Q Consensus 260 ~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 336 (469)
.+...|+.+|.+.+.+++.++.++ |+++++|+||.|.++..... .......+....++
T Consensus 168 -----~~~~~Y~asKaa~~~~~~~la~e~~~~gI~vn~v~PG~v~t~~~~~~--~~~~~~~~~~~~p~------------ 228 (266)
T 3grp_A 168 -----PGQTNYCAAKAGLIGFSKALAQEIASRNITVNCIAPGFIKSAMTDKL--NEKQKEAIMAMIPM------------ 228 (266)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSHHHHTC--CHHHHHHHHTTCTT------------
T ss_pred -----CCchhHHHHHHHHHHHHHHHHHHhhhhCcEEEEEeeCcCCCchhhcc--CHHHHHHHHhcCCC------------
Confidence 345789999999999999998774 89999999999988632211 12333444444332
Q ss_pred EecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCC
Q 012176 337 RDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTS 374 (469)
Q Consensus 337 ~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~ 374 (469)
..+.+++|+|++++.++..... -..|+++++.+|.
T Consensus 229 ~r~~~~edvA~~v~~L~s~~~~---~itG~~i~vdGG~ 263 (266)
T 3grp_A 229 KRMGIGEEIAFATVYLASDEAA---YLTGQTLHINGGM 263 (266)
T ss_dssp CSCBCHHHHHHHHHHHHSGGGT---TCCSCEEEESTTC
T ss_pred CCCcCHHHHHHHHHHHhCcccc---CccCCEEEECCCe
Confidence 3467799999999998865432 2456999998875
|
| >3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.90 E-value=5.2e-23 Score=198.04 Aligned_cols=221 Identities=17% Similarity=0.097 Sum_probs=165.0
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccC--
Q 012176 115 RPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV-- 192 (469)
Q Consensus 115 ~~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~-- 192 (469)
..++|+||||||+|+||++++++|+++|++|++++|...... ....+.+|++|.++++++++.+
T Consensus 25 ~l~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~--------------~~~~~~~Dv~~~~~~~~~~~~~~~ 90 (266)
T 3uxy_A 25 GFEGKVALVTGAAGGIGGAVVTALRAAGARVAVADRAVAGIA--------------ADLHLPGDLREAAYADGLPGAVAA 90 (266)
T ss_dssp -CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEECSSCCTTSC--------------CSEECCCCTTSHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHH--------------hhhccCcCCCCHHHHHHHHHHHHH
Confidence 467899999999999999999999999999999999654321 2234578999999988887653
Q ss_pred ---CccEEEEcccccChh----hhccChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEEcCccccCCCCCCCCCCCC
Q 012176 193 ---PFTHVLHLAAQAGVR----YAMQNPQSYVASNIAGFVNLLEVC----KSVNPQPSIVWASSSSVYGLNTQVPFSESH 261 (469)
Q Consensus 193 ---~~d~Vih~Aa~~~~~----~~~~~~~~~~~~Nv~~~~~ll~aa----~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~ 261 (469)
++|+||||||..... ...++++..+++|+.++.++++++ ++.+.. +||++||...+.+.
T Consensus 91 ~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g-~iv~isS~~~~~~~--------- 160 (266)
T 3uxy_A 91 GLGRLDIVVNNAGVISRGRITETTDADWSLSLGVNVEAPFRICRAAIPLMAAAGGG-AIVNVASCWGLRPG--------- 160 (266)
T ss_dssp HHSCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE-EEEEECCSBTTBCC---------
T ss_pred hcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCc-EEEEECCHHhCCCC---------
Confidence 679999999975432 234555678999999999999987 455544 99999998766422
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCCC-----CChHHHHHHHHHcCCceEEEeeCCCC
Q 012176 262 RTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRP-----DMAYFFFTKDILQGKTIDVYKTQDDR 333 (469)
Q Consensus 262 ~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~~-----~~~~~~~~~~~~~g~~~~~~~~~~~~ 333 (469)
.+...|+.+|.+.+.+++.++.++ |+++++|+||.|.++.... ..........+....+
T Consensus 161 ---~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~p---------- 227 (266)
T 3uxy_A 161 ---PGHALYCLTKAALASLTQCMGMDHAPQGIRINAVCPNEVNTPMLRTGFAKRGFDPDRAVAELGRTVP---------- 227 (266)
T ss_dssp ---TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBCCHHHHHHHHHTTCCHHHHHHHHHTTST----------
T ss_pred ---CCChHHHHHHHHHHHHHHHHHHHhhhcCcEEEEEeeCCCcchHhhhhhhcccccchHHHHHHHhcCC----------
Confidence 345789999999999999998775 8999999999999863210 0011122233333322
Q ss_pred cceEecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCCccc
Q 012176 334 EVARDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTSPVP 377 (469)
Q Consensus 334 ~~~~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~~vt 377 (469)
...+.+++|+|++++.++..... ...|+++++.+|..++
T Consensus 228 --~~r~~~pedvA~~v~~L~s~~~~---~itG~~i~vdGG~~~s 266 (266)
T 3uxy_A 228 --LGRIAEPEDIADVVLFLASDAAR---YLCGSLVEVNGGKAVA 266 (266)
T ss_dssp --TSSCBCHHHHHHHHHHHHSGGGT---TCCSCEEEESTTCCCC
T ss_pred --CCCCcCHHHHHHHHHHHhCchhc---CCcCCEEEECcCEeCC
Confidence 23577899999999998875432 3456999999987543
|
| >2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold, oxidoreductase; HET: BMA; 1.60A {Thermoplasma acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A | Back alignment and structure |
|---|
Probab=99.90 E-value=6.1e-23 Score=197.34 Aligned_cols=217 Identities=15% Similarity=0.097 Sum_probs=162.7
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccC---
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~--- 192 (469)
.++|+||||||+|+||++++++|+++|++|++++|.... ..++.++.+|++|+++++++++.+
T Consensus 6 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~--------------~~~~~~~~~Dl~~~~~v~~~~~~~~~~ 71 (264)
T 2dtx_A 6 LRDKVVIVTGASMGIGRAIAERFVDEGSKVIDLSIHDPG--------------EAKYDHIECDVTNPDQVKASIDHIFKE 71 (264)
T ss_dssp GTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESSCCC--------------SCSSEEEECCTTCHHHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEecCccc--------------CCceEEEEecCCCHHHHHHHHHHHHHH
Confidence 467899999999999999999999999999999996542 247889999999999999888753
Q ss_pred --CccEEEEcccccChh----hhccChHHHHHHHHHHHHHHHHHHHhc----CCCCeEEEEcCccccCCCCCCCCCCCCC
Q 012176 193 --PFTHVLHLAAQAGVR----YAMQNPQSYVASNIAGFVNLLEVCKSV----NPQPSIVWASSSSVYGLNTQVPFSESHR 262 (469)
Q Consensus 193 --~~d~Vih~Aa~~~~~----~~~~~~~~~~~~Nv~~~~~ll~aa~~~----~~~~~~V~~SS~~vyg~~~~~~~~E~~~ 262 (469)
++|+||||||..... ...++++..+++|+.++.++++++... +. ++||++||...+.+.
T Consensus 72 ~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~-g~iv~isS~~~~~~~---------- 140 (264)
T 2dtx_A 72 YGSISVLVNNAGIESYGKIESMSMGEWRRIIDVNLFGYYYASKFAIPYMIRSRD-PSIVNISSVQASIIT---------- 140 (264)
T ss_dssp HSCCCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSS-CEEEEECCGGGTSCC----------
T ss_pred cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCC-cEEEEECCchhccCC----------
Confidence 579999999974332 234456789999999999999887543 33 499999998876432
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHhC--CcEEEEeecceecCCCCCC-------Ch--HHHHHHHHHcCCceEEEeeCC
Q 012176 263 TDQPASLYAATKKAGEEIAHTYNHIYG--LALTGLRFFTVYGPWGRPD-------MA--YFFFTKDILQGKTIDVYKTQD 331 (469)
Q Consensus 263 ~~~p~~~Y~~sK~~~E~~~~~~~~~~g--i~~~ilRp~~v~Gp~~~~~-------~~--~~~~~~~~~~g~~~~~~~~~~ 331 (469)
.+...|+.+|.+.|.+++.++.+++ +++++|+||.|.++..... .. +......+....
T Consensus 141 --~~~~~Y~~sK~a~~~~~~~la~e~~~~i~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 209 (264)
T 2dtx_A 141 --KNASAYVTSKHAVIGLTKSIALDYAPLLRCNAVCPATIDTPLVRKAAELEVGSDPMRIEKKISEWGHEH--------- 209 (264)
T ss_dssp --TTBHHHHHHHHHHHHHHHHHHHHHTTTSEEEEEEECSBCSHHHHHHHHHHHCSCHHHHHHHHHHHHHHS---------
T ss_pred --CCchhHHHHHHHHHHHHHHHHHHhcCCcEEEEEEeCCCcCcchhhhhhcccccCchhhHHHHHHHHhcC---------
Confidence 3457899999999999999998865 9999999999987521100 00 001111111111
Q ss_pred CCcceEecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCC
Q 012176 332 DREVARDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTS 374 (469)
Q Consensus 332 ~~~~~~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~ 374 (469)
....+++++|+|++++.++..... ...|+++++.++.
T Consensus 210 ---p~~~~~~p~dvA~~v~~l~s~~~~---~~tG~~i~vdGG~ 246 (264)
T 2dtx_A 210 ---PMQRIGKPQEVASAVAFLASREAS---FITGTCLYVDGGL 246 (264)
T ss_dssp ---TTSSCBCHHHHHHHHHHHHSGGGT---TCCSCEEEESTTG
T ss_pred ---CCCCCcCHHHHHHHHHHHhCchhc---CCCCcEEEECCCc
Confidence 123478999999999998865421 2456899998875
|
| >3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=2.2e-22 Score=195.06 Aligned_cols=231 Identities=10% Similarity=-0.017 Sum_probs=171.7
Q ss_pred CCCCCCCEEEEEcCCCh--hHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhc
Q 012176 113 PRRPNGMTVLVTGAAGF--VGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFD 190 (469)
Q Consensus 113 ~~~~~~~~VlVtGatG~--IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~ 190 (469)
|...++|+|+||||+|+ ||++++++|+++|++|++++|.. ......... ....++.++.+|++|.++++++++
T Consensus 21 M~~l~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~--~~~~~~~l~---~~~~~~~~~~~Dl~~~~~v~~~~~ 95 (280)
T 3nrc_A 21 MGFLAGKKILITGLLSNKSIAYGIAKAMHREGAELAFTYVGQ--FKDRVEKLC---AEFNPAAVLPCDVISDQEIKDLFV 95 (280)
T ss_dssp -CTTTTCEEEECCCCSTTCHHHHHHHHHHHTTCEEEEEECTT--CHHHHHHHH---GGGCCSEEEECCTTCHHHHHHHHH
T ss_pred ccccCCCEEEEECCCCCCCHHHHHHHHHHHcCCEEEEeeCch--HHHHHHHHH---HhcCCceEEEeecCCHHHHHHHHH
Confidence 44577899999999966 99999999999999999999965 111111111 123468999999999999999887
Q ss_pred cC-----CccEEEEcccccChh---------hhccChHHHHHHHHHHHHHHHHHHHhcC--CCCeEEEEcCccccCCCCC
Q 012176 191 VV-----PFTHVLHLAAQAGVR---------YAMQNPQSYVASNIAGFVNLLEVCKSVN--PQPSIVWASSSSVYGLNTQ 254 (469)
Q Consensus 191 ~~-----~~d~Vih~Aa~~~~~---------~~~~~~~~~~~~Nv~~~~~ll~aa~~~~--~~~~~V~~SS~~vyg~~~~ 254 (469)
.+ ++|+||||||..... ...++.+..+++|+.++.++++++...- ..++||++||.+.+.+.
T Consensus 96 ~~~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~g~iv~isS~~~~~~~-- 173 (280)
T 3nrc_A 96 ELGKVWDGLDAIVHSIAFAPRDQLEGNFIDCVTREGFSIAHDISAYSFAALAKEGRSMMKNRNASMVALTYIGAEKAM-- 173 (280)
T ss_dssp HHHHHCSSCCEEEECCCCCCGGGSSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTTCEEEEEECGGGTSCC--
T ss_pred HHHHHcCCCCEEEECCccCCCcccCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEeccccccCC--
Confidence 64 689999999975431 3345556789999999999999876531 13499999998776432
Q ss_pred CCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCC
Q 012176 255 VPFSESHRTDQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQD 331 (469)
Q Consensus 255 ~~~~E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 331 (469)
.+...|+.+|.+.+.+++.++.+ .|+++++|+||.|.++..........+........++
T Consensus 174 ----------~~~~~Y~asKaal~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~p~------- 236 (280)
T 3nrc_A 174 ----------PSYNTMGVAKASLEATVRYTALALGEDGIKVNAVSAGPIKTLAASGISNFKKMLDYNAMVSPL------- 236 (280)
T ss_dssp ----------TTTHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCCCCSGGGGCTTHHHHHHHHHHHSTT-------
T ss_pred ----------CCchhhHHHHHHHHHHHHHHHHHHHHcCcEEEEEeeccccchhhhcCcchHHHHHHHHhcCCC-------
Confidence 34578999999999999998876 4899999999999997544332333444444333322
Q ss_pred CCcceEecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCCc
Q 012176 332 DREVARDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTSP 375 (469)
Q Consensus 332 ~~~~~~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~~ 375 (469)
..+..++|+|++++.++..... ...|+++++.+|..
T Consensus 237 -----~~~~~pedvA~~v~~l~s~~~~---~~tG~~i~vdgG~~ 272 (280)
T 3nrc_A 237 -----KKNVDIMEVGNTVAFLCSDMAT---GITGEVVHVDAGYH 272 (280)
T ss_dssp -----CSCCCHHHHHHHHHHTTSGGGT---TCCSCEEEESTTGG
T ss_pred -----CCCCCHHHHHHHHHHHhCcccC---CcCCcEEEECCCcc
Confidence 2356789999999998875422 34569999998864
|
| >3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=99.90 E-value=2e-23 Score=201.35 Aligned_cols=228 Identities=12% Similarity=0.043 Sum_probs=167.7
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhh-ccCCeEEEEecCCCHHHHHHhhccC-
Q 012176 115 RPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLL-QKHQVFIVEGDLNDAPLLTKLFDVV- 192 (469)
Q Consensus 115 ~~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~v~~v~~Dl~d~~~l~~~~~~~- 192 (469)
..++|+||||||+|+||++++++|+++|++|++++|+.+ .......... ....+..+.+|++|.++++++++.+
T Consensus 25 ~l~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~----~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~ 100 (270)
T 3ftp_A 25 TLDKQVAIVTGASRGIGRAIALELARRGAMVIGTATTEA----GAEGIGAAFKQAGLEGRGAVLNVNDATAVDALVESTL 100 (270)
T ss_dssp TTTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHH----HHHHHHHHHHHHTCCCEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHH----HHHHHHHHHHhcCCcEEEEEEeCCCHHHHHHHHHHHH
Confidence 367899999999999999999999999999999999543 1222112111 1347889999999999999888754
Q ss_pred ----CccEEEEcccccChh----hhccChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEEcCccccCCCCCCCCCCC
Q 012176 193 ----PFTHVLHLAAQAGVR----YAMQNPQSYVASNIAGFVNLLEVCKS----VNPQPSIVWASSSSVYGLNTQVPFSES 260 (469)
Q Consensus 193 ----~~d~Vih~Aa~~~~~----~~~~~~~~~~~~Nv~~~~~ll~aa~~----~~~~~~~V~~SS~~vyg~~~~~~~~E~ 260 (469)
++|+||||||..... ...++++..+++|+.++.++++++.. .+. ++||++||...+.+.
T Consensus 101 ~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~-g~iv~isS~~~~~~~-------- 171 (270)
T 3ftp_A 101 KEFGALNVLVNNAGITQDQLAMRMKDDEWDAVIDTNLKAVFRLSRAVLRPMMKARG-GRIVNITSVVGSAGN-------- 171 (270)
T ss_dssp HHHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-EEEEEECCHHHHHCC--------
T ss_pred HHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCC-CEEEEECchhhCCCC--------
Confidence 679999999974432 23455678999999999999998753 333 389999997765322
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceE
Q 012176 261 HRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVAR 337 (469)
Q Consensus 261 ~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 337 (469)
.+...|+.+|.+.+.+++.++.++ |+++++|+||.|.++..... .......+....+ ..
T Consensus 172 ----~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~--~~~~~~~~~~~~p------------~~ 233 (270)
T 3ftp_A 172 ----PGQVNYAAAKAGVAGMTRALAREIGSRGITVNCVAPGFIDTDMTKGL--PQEQQTALKTQIP------------LG 233 (270)
T ss_dssp ----TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSHHHHHS--CHHHHHHHHTTCT------------TC
T ss_pred ----CCchhHHHHHHHHHHHHHHHHHHHhhhCeEEEEEEeCCCcCcchhhc--CHHHHHHHHhcCC------------CC
Confidence 345789999999999999998774 89999999999988632110 0122223333322 23
Q ss_pred ecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCCcc
Q 012176 338 DFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTSPV 376 (469)
Q Consensus 338 ~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~~v 376 (469)
.+.+++|+|++++.++..... ...|+++++.+|..+
T Consensus 234 r~~~pedvA~~v~~L~s~~~~---~itG~~i~vdGG~~~ 269 (270)
T 3ftp_A 234 RLGSPEDIAHAVAFLASPQAG---YITGTTLHVNGGMFM 269 (270)
T ss_dssp SCBCHHHHHHHHHHHHSGGGT---TCCSCEEEESTTSSC
T ss_pred CCCCHHHHHHHHHHHhCCCcC---CccCcEEEECCCccc
Confidence 477899999999988854321 345699999988654
|
| >4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=99.90 E-value=4.3e-23 Score=199.15 Aligned_cols=229 Identities=13% Similarity=0.085 Sum_probs=158.5
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhh-ccCCeEEEEecCCCHHHHHHhhccC--
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLL-QKHQVFIVEGDLNDAPLLTKLFDVV-- 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~v~~v~~Dl~d~~~l~~~~~~~-- 192 (469)
.++++||||||+|+||++++++|+++|++|+++.+... ........... ...++.++.+|++|.++++++++..
T Consensus 24 ~~~k~vlITGas~gIG~a~a~~l~~~G~~V~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~ 100 (272)
T 4e3z_A 24 SDTPVVLVTGGSRGIGAAVCRLAARQGWRVGVNYAANR---EAADAVVAAITESGGEAVAIPGDVGNAADIAAMFSAVDR 100 (272)
T ss_dssp CCSCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCH---HHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCCh---hHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHH
Confidence 35689999999999999999999999999988744221 11111111111 1347899999999999999888765
Q ss_pred ---CccEEEEcccccCh-----hhhccChHHHHHHHHHHHHHHHHHHHhc------CCCCeEEEEcCccccCCCCCCCCC
Q 012176 193 ---PFTHVLHLAAQAGV-----RYAMQNPQSYVASNIAGFVNLLEVCKSV------NPQPSIVWASSSSVYGLNTQVPFS 258 (469)
Q Consensus 193 ---~~d~Vih~Aa~~~~-----~~~~~~~~~~~~~Nv~~~~~ll~aa~~~------~~~~~~V~~SS~~vyg~~~~~~~~ 258 (469)
++|+||||||.... ....++++..+++|+.++.++++++... +..++||++||...+....
T Consensus 101 ~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~----- 175 (272)
T 4e3z_A 101 QFGRLDGLVNNAGIVDYPQRVDEMSVERIERMLRVNVTGSILCAAEAVRRMSRLYSGQGGAIVNVSSMAAILGSA----- 175 (272)
T ss_dssp HHSCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCTHHHHCCT-----
T ss_pred hCCCCCEEEECCCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHhccCCCCEEEEEcchHhccCCC-----
Confidence 68999999997542 1234556689999999999999887543 1234899999977653221
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcc
Q 012176 259 ESHRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREV 335 (469)
Q Consensus 259 E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 335 (469)
.....|+.+|.+.|.+++.++.++ |+++++|+||.|.++..... ........+..+ ..
T Consensus 176 ------~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~-~~~~~~~~~~~~------------~~ 236 (272)
T 4e3z_A 176 ------TQYVDYAASKAAIDTFTIGLAREVAAEGIRVNAVRPGIIETDLHASG-GLPDRAREMAPS------------VP 236 (272)
T ss_dssp ------TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBC-------------------C------------CT
T ss_pred ------CCcchhHHHHHHHHHHHHHHHHHHHHcCcEEEEEecCCCcCCccccc-CChHHHHHHhhc------------CC
Confidence 134579999999999999998876 89999999999999854321 111111222111 22
Q ss_pred eEecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCC
Q 012176 336 ARDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTS 374 (469)
Q Consensus 336 ~~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~ 374 (469)
...+.+++|+|++++.++..... ...|++|++.+|.
T Consensus 237 ~~~~~~~edvA~~i~~l~s~~~~---~~tG~~i~vdgG~ 272 (272)
T 4e3z_A 237 MQRAGMPEEVADAILYLLSPSAS---YVTGSILNVSGGR 272 (272)
T ss_dssp TSSCBCHHHHHHHHHHHHSGGGT---TCCSCEEEESTTC
T ss_pred cCCCcCHHHHHHHHHHHhCCccc---cccCCEEeecCCC
Confidence 23466799999999999865422 3456999998863
|
| >2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.4e-22 Score=196.11 Aligned_cols=226 Identities=11% Similarity=0.049 Sum_probs=163.4
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccC---
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~--- 192 (469)
.++|+|+||||+|+||++++++|+++|++|++++|+.+ .............++.++.+|++|+++++++++.+
T Consensus 27 l~~k~vlVTGas~gIG~aia~~L~~~G~~V~~~~r~~~----~~~~~~~~l~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 102 (276)
T 2b4q_A 27 LAGRIALVTGGSRGIGQMIAQGLLEAGARVFICARDAE----ACADTATRLSAYGDCQAIPADLSSEAGARRLAQALGEL 102 (276)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCHH----HHHHHHHHHTTSSCEEECCCCTTSHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHH----HHHHHHHHHHhcCceEEEEeeCCCHHHHHHHHHHHHHh
Confidence 57899999999999999999999999999999998542 12222222222237889999999999999888753
Q ss_pred --CccEEEEcccccChh----hhccChHHHHHHHHHHHHHHHHHHH----hcCCC---CeEEEEcCccccCCCCCCCCCC
Q 012176 193 --PFTHVLHLAAQAGVR----YAMQNPQSYVASNIAGFVNLLEVCK----SVNPQ---PSIVWASSSSVYGLNTQVPFSE 259 (469)
Q Consensus 193 --~~d~Vih~Aa~~~~~----~~~~~~~~~~~~Nv~~~~~ll~aa~----~~~~~---~~~V~~SS~~vyg~~~~~~~~E 259 (469)
++|+||||||..... ...++++..+++|+.++.++++++. +.+.. ++||++||...+.+.
T Consensus 103 ~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~~~~g~iV~isS~~~~~~~------- 175 (276)
T 2b4q_A 103 SARLDILVNNAGTSWGAALESYPVSGWEKVMQLNVTSVFSCIQQLLPLLRRSASAENPARVINIGSVAGISAM------- 175 (276)
T ss_dssp CSCCSEEEECCCCCCCCCTTSCCSHHHHHHHHHHTHHHHHHHHHHHHHHHHHCCSSSCEEEEEECCGGGTCCC-------
T ss_pred cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhccCCCCCCEEEEECCHHHcCCC-------
Confidence 679999999974321 2334556899999999988888764 33431 499999998876432
Q ss_pred CCCCCCCCC-hHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCCCCChHHHHHHHHHc--CCceEEEeeCCCC
Q 012176 260 SHRTDQPAS-LYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQ--GKTIDVYKTQDDR 333 (469)
Q Consensus 260 ~~~~~~p~~-~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~--g~~~~~~~~~~~~ 333 (469)
.... .|+.+|.+.|.+++.++.++ |+++++|+||.|.++.... ....+...+.. ..+
T Consensus 176 -----~~~~~~Y~asK~a~~~~~~~la~e~~~~gI~vn~v~PG~v~T~~~~~--~~~~~~~~~~~~~~~p---------- 238 (276)
T 2b4q_A 176 -----GEQAYAYGPSKAALHQLSRMLAKELVGEHINVNVIAPGRFPSRMTRH--IANDPQALEADSASIP---------- 238 (276)
T ss_dssp -----CCSCTTHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCCCSTTTHH--HHHCHHHHHHHHHTST----------
T ss_pred -----CCCccccHHHHHHHHHHHHHHHHHhcccCeEEEEEEeccCcCcchhh--cchhHHHHHHhhcCCC----------
Confidence 1234 79999999999999998764 8999999999998874321 00111111111 111
Q ss_pred cceEecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCC
Q 012176 334 EVARDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTS 374 (469)
Q Consensus 334 ~~~~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~ 374 (469)
...+.+++|+|++++.++..+.. ...|+++++.++.
T Consensus 239 --~~r~~~p~dvA~~v~~l~s~~~~---~~tG~~i~vdGG~ 274 (276)
T 2b4q_A 239 --MGRWGRPEEMAALAISLAGTAGA---YMTGNVIPIDGGF 274 (276)
T ss_dssp --TSSCCCHHHHHHHHHHHHSGGGT---TCCSCEEEESTTT
T ss_pred --CCCcCCHHHHHHHHHHHhCcccc---CCCCCEEEeCCCc
Confidence 12377899999999999865421 2456899998874
|
| >3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.5e-23 Score=204.77 Aligned_cols=233 Identities=14% Similarity=0.077 Sum_probs=168.5
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhh-ccCCeEEEEecCCCHHHHHHhhccC-
Q 012176 115 RPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLL-QKHQVFIVEGDLNDAPLLTKLFDVV- 192 (469)
Q Consensus 115 ~~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~v~~v~~Dl~d~~~l~~~~~~~- 192 (469)
..++|+||||||+|+||++++++|+++|++|++++|.... ........... ...++.++.+|++|+++++++++.+
T Consensus 46 ~l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~ 123 (294)
T 3r3s_A 46 RLKDRKALVTGGDSGIGRAAAIAYAREGADVAINYLPAEE--EDAQQVKALIEECGRKAVLLPGDLSDESFARSLVHKAR 123 (294)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECCGGGH--HHHHHHHHHHHHTTCCEEECCCCTTSHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcch--hHHHHHHHHHHHcCCcEEEEEecCCCHHHHHHHHHHHH
Confidence 4678999999999999999999999999999999884220 11111111111 1347899999999999998888753
Q ss_pred ----CccEEEEcccccCh-----hhhccChHHHHHHHHHHHHHHHHHHHhcCC-CCeEEEEcCccccCCCCCCCCCCCCC
Q 012176 193 ----PFTHVLHLAAQAGV-----RYAMQNPQSYVASNIAGFVNLLEVCKSVNP-QPSIVWASSSSVYGLNTQVPFSESHR 262 (469)
Q Consensus 193 ----~~d~Vih~Aa~~~~-----~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~-~~~~V~~SS~~vyg~~~~~~~~E~~~ 262 (469)
++|+||||||.... ....++++..+++|+.++.++++++..... .++||++||...+.+.
T Consensus 124 ~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~Iv~isS~~~~~~~---------- 193 (294)
T 3r3s_A 124 EALGGLDILALVAGKQTAIPEIKDLTSEQFQQTFAVNVFALFWITQEAIPLLPKGASIITTSSIQAYQPS---------- 193 (294)
T ss_dssp HHHTCCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEECCGGGTSCC----------
T ss_pred HHcCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEEECChhhccCC----------
Confidence 67999999997432 123455678999999999999999876532 2489999998887533
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceEec
Q 012176 263 TDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDF 339 (469)
Q Consensus 263 ~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 339 (469)
.....|+.+|.+.+.+++.++.++ |+++++|+||.|+++..............+. .......+
T Consensus 194 --~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~t~~~~~~~~~~~~~~~~~------------~~~p~~r~ 259 (294)
T 3r3s_A 194 --PHLLDYAATKAAILNYSRGLAKQVAEKGIRVNIVAPGPIWTALQISGGQTQDKIPQFG------------QQTPMKRA 259 (294)
T ss_dssp --TTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSHHHHTTTSCGGGSTTTT------------TTSTTSSC
T ss_pred --CCchHHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCcCccccccccCCCHHHHHHHH------------hcCCCCCC
Confidence 345789999999999999999876 8999999999999863110000000111111 12223456
Q ss_pred ccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCCcc
Q 012176 340 TYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTSPV 376 (469)
Q Consensus 340 v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~~v 376 (469)
..++|+|++++.++..... -..|+++++.+|..+
T Consensus 260 ~~p~dvA~~v~~L~s~~~~---~itG~~i~vdGG~~l 293 (294)
T 3r3s_A 260 GQPAELAPVYVYLASQESS---YVTAEVHGVCGGEHL 293 (294)
T ss_dssp BCGGGGHHHHHHHHSGGGT---TCCSCEEEESTTCCC
T ss_pred cCHHHHHHHHHHHhCcccc---CCCCCEEEECCCccC
Confidence 7889999999998865422 345699999998654
|
| >4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.90 E-value=5.2e-23 Score=199.52 Aligned_cols=231 Identities=16% Similarity=0.082 Sum_probs=157.0
Q ss_pred CCCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhh-ccCCeEEEEecCCCHHHHHHhhccC
Q 012176 114 RRPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLL-QKHQVFIVEGDLNDAPLLTKLFDVV 192 (469)
Q Consensus 114 ~~~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~v~~v~~Dl~d~~~l~~~~~~~ 192 (469)
...++|+||||||+|+||++++++|+++|++|++++|... ........... ...++.++.+|++|+++++++++.+
T Consensus 25 ~~~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~ 101 (280)
T 4da9_A 25 TQKARPVAIVTGGRRGIGLGIARALAASGFDIAITGIGDA---EGVAPVIAELSGLGARVIFLRADLADLSSHQATVDAV 101 (280)
T ss_dssp SCCCCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCH---HHHHHHHHHHHHTTCCEEEEECCTTSGGGHHHHHHHH
T ss_pred hccCCCEEEEecCCCHHHHHHHHHHHHCCCeEEEEeCCCH---HHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHH
Confidence 3467899999999999999999999999999999997432 11222222221 1347999999999999999888754
Q ss_pred -----CccEEEEcccccCh------hhhccChHHHHHHHHHHHHHHHHHHHhc----CC--CCeEEEEcCccccCCCCCC
Q 012176 193 -----PFTHVLHLAAQAGV------RYAMQNPQSYVASNIAGFVNLLEVCKSV----NP--QPSIVWASSSSVYGLNTQV 255 (469)
Q Consensus 193 -----~~d~Vih~Aa~~~~------~~~~~~~~~~~~~Nv~~~~~ll~aa~~~----~~--~~~~V~~SS~~vyg~~~~~ 255 (469)
++|+||||||.... ....++++..+++|+.++.++++++... +. .++||++||...+.+.
T Consensus 102 ~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~~g~Iv~isS~~~~~~~--- 178 (280)
T 4da9_A 102 VAEFGRIDCLVNNAGIASIVRDDFLDLKPENFDTIVGVNLRGTVFFTQAVLKAMLASDARASRSIINITSVSAVMTS--- 178 (280)
T ss_dssp HHHHSCCCEEEEECC------CCGGGCCHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCC---------
T ss_pred HHHcCCCCEEEECCCccccCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCCCCCCEEEEEcchhhccCC---
Confidence 67999999997321 1234556678899999999999886543 21 2389999997765322
Q ss_pred CCCCCCCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCC
Q 012176 256 PFSESHRTDQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDD 332 (469)
Q Consensus 256 ~~~E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 332 (469)
.+...|+.+|.+.+.+++.++.+ +|+++++|+||.|.++..... .......+..+
T Consensus 179 ---------~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~--~~~~~~~~~~~----------- 236 (280)
T 4da9_A 179 ---------PERLDYCMSKAGLAAFSQGLALRLAETGIAVFEVRPGIIRSDMTAAV--SGKYDGLIESG----------- 236 (280)
T ss_dssp ----------CCHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCBCC------------------------------
T ss_pred ---------CCccHHHHHHHHHHHHHHHHHHHHHHhCcEEEEEeecCCcCCchhhc--chhHHHHHhhc-----------
Confidence 34567999999999999999987 589999999999998744321 01111111110
Q ss_pred CcceEecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCCc
Q 012176 333 REVARDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTSP 375 (469)
Q Consensus 333 ~~~~~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~~ 375 (469)
......+..++|+|++++.++..... -..|+++++.+|..
T Consensus 237 ~~p~~r~~~pedvA~~v~~L~s~~~~---~itG~~i~vdGG~~ 276 (280)
T 4da9_A 237 LVPMRRWGEPEDIGNIVAGLAGGQFG---FATGSVIQADGGLS 276 (280)
T ss_dssp -----CCBCHHHHHHHHHHHHTSTTG---GGTTCEEEESTTCC
T ss_pred CCCcCCcCCHHHHHHHHHHHhCcccc---CCCCCEEEECCCcc
Confidence 12234578899999999998875532 24569999998754
|
| >3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.2e-22 Score=199.14 Aligned_cols=218 Identities=16% Similarity=0.101 Sum_probs=155.1
Q ss_pred CCCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhh-ccCCeEEEEecCCCHHHHHHhhccC
Q 012176 114 RRPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLL-QKHQVFIVEGDLNDAPLLTKLFDVV 192 (469)
Q Consensus 114 ~~~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~v~~v~~Dl~d~~~l~~~~~~~ 192 (469)
...++|+||||||+|+||++++++|+++|++|++++|+.+ .......... ...++.++.+|++|.++++++++.+
T Consensus 27 ~~l~gk~vlVTGas~gIG~~la~~l~~~G~~V~~~~r~~~----~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~ 102 (301)
T 3tjr_A 27 SGFDGRAAVVTGGASGIGLATATEFARRGARLVLSDVDQP----ALEQAVNGLRGQGFDAHGVVCDVRHLDEMVRLADEA 102 (301)
T ss_dssp CCSTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH----HHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHH
T ss_pred hccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH----HHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHH
Confidence 3467899999999999999999999999999999999543 2222222221 1347899999999999999888754
Q ss_pred -----CccEEEEcccccCh----hhhccChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEEcCccccCCCCCCCCCC
Q 012176 193 -----PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCK----SVNPQPSIVWASSSSVYGLNTQVPFSE 259 (469)
Q Consensus 193 -----~~d~Vih~Aa~~~~----~~~~~~~~~~~~~Nv~~~~~ll~aa~----~~~~~~~~V~~SS~~vyg~~~~~~~~E 259 (469)
++|+||||||.... ....++.+..+++|+.++.++++++. +.+..++||++||...+.+.
T Consensus 103 ~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~~~------- 175 (301)
T 3tjr_A 103 FRLLGGVDVVFSNAGIVVAGPLAQMNHDDWRWVIDIDLWGSIHAVEAFLPRLLEQGTGGHIAFTASFAGLVPN------- 175 (301)
T ss_dssp HHHHSSCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCSCEEEEEECCGGGTSCC-------
T ss_pred HHhCCCCCEEEECCCcCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCCcEEEEeCchhhcCCC-------
Confidence 67999999997533 22345566799999999999999864 33423489999998776432
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCCCCChHHHHHH-----HHHcCCceEEEeeCC
Q 012176 260 SHRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTK-----DILQGKTIDVYKTQD 331 (469)
Q Consensus 260 ~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~~~~~~~~~~~-----~~~~g~~~~~~~~~~ 331 (469)
.+...|+.+|.+.+.+++.++.++ |+++++|+||.|..+... .... ......+...+ +
T Consensus 176 -----~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~------~~~~~~~~~~~~~~~~~~~~---~ 241 (301)
T 3tjr_A 176 -----AGLGTYGVAKYGVVGLAETLAREVKPNGIGVSVLCPMVVETKLVS------NSERIRGADYGMSATPEGAF---G 241 (301)
T ss_dssp -----TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEECCSCCCSSHHH------HHHHHC------------------
T ss_pred -----CCchHHHHHHHHHHHHHHHHHHHhcccCcEEEEEECCcccccccc------ccccccchhhccccChhhhc---c
Confidence 345789999999999999998775 899999999999876211 1100 00011122222 1
Q ss_pred CCcceEecccHHHHHHHHHHHhccC
Q 012176 332 DREVARDFTYIDDVVKGCVGATGSG 356 (469)
Q Consensus 332 ~~~~~~~~v~v~Dva~~~~~~~~~~ 356 (469)
.......+++++|+|++++.+++.+
T Consensus 242 ~~~~~~~~~~pedvA~~i~~~l~~~ 266 (301)
T 3tjr_A 242 PLPTQDESVSADDVARLTADAILAN 266 (301)
T ss_dssp -------CCCHHHHHHHHHHHHHHT
T ss_pred ccccccCCCCHHHHHHHHHHHHhcC
Confidence 2234457899999999999999876
|
| >3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=2.7e-22 Score=192.82 Aligned_cols=232 Identities=10% Similarity=0.033 Sum_probs=171.2
Q ss_pred CCCCEEEEEcCCCh--hHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccC-
Q 012176 116 PNGMTVLVTGAAGF--VGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV- 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~--IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~- 192 (469)
.++|+|+||||+|+ ||++++++|+++|++|++++|.... .+.... ........++.++.+|++|+++++++++..
T Consensus 5 l~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~~~-~~~~~~-~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~ 82 (266)
T 3oig_A 5 LEGRNIVVMGVANKRSIAWGIARSLHEAGARLIFTYAGERL-EKSVHE-LAGTLDRNDSIILPCDVTNDAEIETCFASIK 82 (266)
T ss_dssp CTTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGG-HHHHHH-HHHTSSSCCCEEEECCCSSSHHHHHHHHHHH
T ss_pred cCCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEecCchHH-HHHHHH-HHHhcCCCCceEEeCCCCCHHHHHHHHHHHH
Confidence 67899999999988 9999999999999999999985321 111111 111122237999999999999999988764
Q ss_pred ----CccEEEEcccccCh--------hhhccChHHHHHHHHHHHHHHHHHHHhcCC-CCeEEEEcCccccCCCCCCCCCC
Q 012176 193 ----PFTHVLHLAAQAGV--------RYAMQNPQSYVASNIAGFVNLLEVCKSVNP-QPSIVWASSSSVYGLNTQVPFSE 259 (469)
Q Consensus 193 ----~~d~Vih~Aa~~~~--------~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~-~~~~V~~SS~~vyg~~~~~~~~E 259 (469)
++|+||||||.... ....++....+++|+.++.++++++..... .++||++||.+.+.+.
T Consensus 83 ~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS~~~~~~~------- 155 (266)
T 3oig_A 83 EQVGVIHGIAHCIAFANKEELVGEYLNTNRDGFLLAHNISSYSLTAVVKAARPMMTEGGSIVTLTYLGGELVM------- 155 (266)
T ss_dssp HHHSCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEECGGGTSCC-------
T ss_pred HHhCCeeEEEEccccccccccccchhhccHHHHHHHHHHhHHHHHHHHHHHHhhcCCCceEEEEecccccccC-------
Confidence 68999999997541 123344567899999999999999876533 2489999998776432
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcce
Q 012176 260 SHRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVA 336 (469)
Q Consensus 260 ~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 336 (469)
.....|+.+|.+.+.+++.++.++ |+++++|+||.|..+..........+...+....++
T Consensus 156 -----~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~------------ 218 (266)
T 3oig_A 156 -----PNYNVMGVAKASLDASVKYLAADLGKENIRVNSISAGPIRTLSAKGISDFNSILKDIEERAPL------------ 218 (266)
T ss_dssp -----TTTHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCCCSGGGTTCTTHHHHHHHHHHHSTT------------
T ss_pred -----CCcchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCcccccccccccchHHHHHHHHhcCCC------------
Confidence 345789999999999999998775 799999999999987544333333444444333322
Q ss_pred EecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCCcc
Q 012176 337 RDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTSPV 376 (469)
Q Consensus 337 ~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~~v 376 (469)
..+.+++|+|++++.++..... ...|+++++.+|...
T Consensus 219 ~~~~~p~dva~~v~~l~s~~~~---~~tG~~i~vdGG~~~ 255 (266)
T 3oig_A 219 RRTTTPEEVGDTAAFLFSDMSR---GITGENLHVDSGFHI 255 (266)
T ss_dssp SSCCCHHHHHHHHHHHHSGGGT---TCCSCEEEESTTGGG
T ss_pred CCCCCHHHHHHHHHHHcCCchh---cCcCCEEEECCCeEE
Confidence 2356799999999999875432 345699999987643
|
| >2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP} SCOP: c.2.1.2 PDB: 2ewm_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=1.3e-22 Score=193.30 Aligned_cols=226 Identities=12% Similarity=0.064 Sum_probs=158.4
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccC---
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~--- 192 (469)
.++|+|+||||+|+||++++++|+++|++|++++|+.. ......... ...++.++.+|++|+++++++++..
T Consensus 5 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~---~~~~~~~~~--~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 79 (249)
T 2ew8_A 5 LKDKLAVITGGANGIGRAIAERFAVEGADIAIADLVPA---PEAEAAIRN--LGRRVLTVKCDVSQPGDVEAFGKQVIST 79 (249)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCC---HHHHHHHHH--TTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCch---hHHHHHHHh--cCCcEEEEEeecCCHHHHHHHHHHHHHH
Confidence 56789999999999999999999999999999999651 111111111 1347889999999999998887643
Q ss_pred --CccEEEEcccccChh----hhccChHHHHHHHHHHHHHHHHH----HHhcCCCCeEEEEcCccccCCCCCCCCCCCCC
Q 012176 193 --PFTHVLHLAAQAGVR----YAMQNPQSYVASNIAGFVNLLEV----CKSVNPQPSIVWASSSSVYGLNTQVPFSESHR 262 (469)
Q Consensus 193 --~~d~Vih~Aa~~~~~----~~~~~~~~~~~~Nv~~~~~ll~a----a~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~ 262 (469)
++|+||||||..... ...++++..+++|+.++.+++++ +++.+.. +||++||...+.+.
T Consensus 80 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g-~iv~isS~~~~~~~---------- 148 (249)
T 2ew8_A 80 FGRCDILVNNAGIYPLIPFDELTFEQWKKTFEINVDSGFLMAKAFVPGMKRNGWG-RIINLTSTTYWLKI---------- 148 (249)
T ss_dssp HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE-EEEEECCGGGGSCC----------
T ss_pred cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCe-EEEEEcchhhccCC----------
Confidence 579999999974321 23345567899999998888887 4455544 99999998877532
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceEec
Q 012176 263 TDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDF 339 (469)
Q Consensus 263 ~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 339 (469)
.+...|+.+|.+.+.+++.++.++ |+++++|+||.|.++..... ..... ...... .. .....+
T Consensus 149 --~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~-~~~~~-~~~~~~-~~---------~~~~~~ 214 (249)
T 2ew8_A 149 --EAYTHYISTKAANIGFTRALASDLGKDGITVNAIAPSLVRTATTEAS-ALSAM-FDVLPN-ML---------QAIPRL 214 (249)
T ss_dssp --SSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCC--------------------C-TT---------SSSCSC
T ss_pred --CCchhHHHHHHHHHHHHHHHHHHHHhcCcEEEEEecCcCcCccchhc-cccch-hhHHHH-hh---------CccCCC
Confidence 345789999999999999998774 89999999999998743310 00000 000000 00 111347
Q ss_pred ccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCC
Q 012176 340 TYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTS 374 (469)
Q Consensus 340 v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~ 374 (469)
.+++|+|++++.++..... ...|+++++.++.
T Consensus 215 ~~p~dva~~~~~l~s~~~~---~~tG~~~~vdGG~ 246 (249)
T 2ew8_A 215 QVPLDLTGAAAFLASDDAS---FITGQTLAVDGGM 246 (249)
T ss_dssp CCTHHHHHHHHHHTSGGGT---TCCSCEEEESSSC
T ss_pred CCHHHHHHHHHHHcCcccC---CCCCcEEEECCCc
Confidence 8999999999999865321 2456899998874
|
| >1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.90 E-value=1.3e-23 Score=205.50 Aligned_cols=242 Identities=14% Similarity=0.091 Sum_probs=173.4
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhc-cC---CeEEEEecCCCHHHHHHhhcc
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQ-KH---QVFIVEGDLNDAPLLTKLFDV 191 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~-~~---~v~~v~~Dl~d~~~l~~~~~~ 191 (469)
.++|+||||||+|+||++++++|+++|++|++++|+.+ ........... .. ++.++.+|++|+++++++++.
T Consensus 24 l~~k~vlVTGas~gIG~aia~~L~~~G~~V~~~~r~~~----~~~~~~~~l~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~ 99 (297)
T 1xhl_A 24 FSGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNED----RLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINT 99 (297)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHH----HHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHH----HHHHHHHHHHhcCCCCceEEEEecCCCCHHHHHHHHHH
Confidence 67899999999999999999999999999999999543 12222222211 12 689999999999999988874
Q ss_pred C-----CccEEEEcccccCh------hhhccChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEEcCccccCCCCCCC
Q 012176 192 V-----PFTHVLHLAAQAGV------RYAMQNPQSYVASNIAGFVNLLEVCKS----VNPQPSIVWASSSSVYGLNTQVP 256 (469)
Q Consensus 192 ~-----~~d~Vih~Aa~~~~------~~~~~~~~~~~~~Nv~~~~~ll~aa~~----~~~~~~~V~~SS~~vyg~~~~~~ 256 (469)
+ ++|+||||||.... ....++++..+++|+.++.++++++.. .+ ++||++||...+....
T Consensus 100 ~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~--g~IV~isS~~~~~~~~--- 174 (297)
T 1xhl_A 100 TLAKFGKIDILVNNAGANLADGTANTDQPVELYQKTFKLNFQAVIEMTQKTKEHLIKTK--GEIVNVSSIVAGPQAH--- 174 (297)
T ss_dssp HHHHHSCCCEEEECCCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT--CEEEEECCGGGSSSCC---
T ss_pred HHHhcCCCCEEEECCCcCcCCCCccccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcC--CEEEEEcCchhccCCC---
Confidence 3 67999999996432 123345667999999999999988754 33 4999999987764320
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeecceecCCCCCC--Ch-----HHHHHHHHHcCCceEE
Q 012176 257 FSESHRTDQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPD--MA-----YFFFTKDILQGKTIDV 326 (469)
Q Consensus 257 ~~E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~Gp~~~~~--~~-----~~~~~~~~~~g~~~~~ 326 (469)
.+...|+.+|.+.+.+++.++.+ +|+++++||||.|.++..... .. ...+...+....
T Consensus 175 --------~~~~~Y~asKaa~~~l~~~la~el~~~gI~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 242 (297)
T 1xhl_A 175 --------SGYPYYACAKAALDQYTRCTAIDLIQHGVRVNSVSPGAVATGFMGAMGLPETASDKLYSFIGSRKECI---- 242 (297)
T ss_dssp --------TTSHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCSSHHHHTTCCHHHHHHHHHHHHHCTTTC----
T ss_pred --------CCcchHHHHHHHHHHHHHHHHHHhcccCeEEEEEeeCCCcCccccccccccccccchHHHHHHHHhcC----
Confidence 23467999999999999998865 589999999999998732211 00 011111111111
Q ss_pred EeeCCCCcceEecccHHHHHHHHHHHhccC-CCCCCCCCceEEEeCCCCcccHHHHHHHHHHHh
Q 012176 327 YKTQDDREVARDFTYIDDVVKGCVGATGSG-GKKRGPAQLRVYNLGNTSPVPVGRLVSILENLL 389 (469)
Q Consensus 327 ~~~~~~~~~~~~~v~v~Dva~~~~~~~~~~-~~~~~~~~~~iyni~~~~~vt~~el~~~i~~~~ 389 (469)
....+..++|+|++++.++... .. ...|+++++.++..+.+.+.+..+.+++
T Consensus 243 --------p~~r~~~pedvA~~v~~l~s~~~~~---~itG~~i~vdGG~~~~~~~~~~~~~~~~ 295 (297)
T 1xhl_A 243 --------PVGHCGKPEEIANIIVFLADRNLSS---YIIGQSIVADGGSTLVMGMQTHDLMSVL 295 (297)
T ss_dssp --------TTSSCBCHHHHHHHHHHHHCHHHHT---TCCSCEEEESTTGGGCCGGGGSCHHHHT
T ss_pred --------CCCCCcCHHHHHHHHHHHhCCcccC---CccCcEEEECCCccccccccccchhhhh
Confidence 1124788999999999988643 21 2346999999998777777665555543
|
| >3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=99.90 E-value=9e-23 Score=195.51 Aligned_cols=230 Identities=13% Similarity=0.058 Sum_probs=159.7
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccC---
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~--- 192 (469)
.++|+|+||||+|+||++++++|+++|++|++++|+.+ ...+..... ...+.++.+|++|.++++++++..
T Consensus 7 l~~k~vlITGas~gIG~~~a~~l~~~G~~V~~~~r~~~----~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~ 80 (261)
T 3n74_A 7 LEGKVALITGAGSGFGEGMAKRFAKGGAKVVIVDRDKA----GAERVAGEI--GDAALAVAADISKEADVDAAVEAALSK 80 (261)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH----HHHHHHHHH--CTTEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHH----HHHHHHHHh--CCceEEEEecCCCHHHHHHHHHHHHHh
Confidence 67899999999999999999999999999999999542 222222221 347899999999999999888754
Q ss_pred --CccEEEEcccccChh-----hhccChHHHHHHHHHHHHHHHHHHHhcC-------CCCeEEEEcCccccCCCCCCCCC
Q 012176 193 --PFTHVLHLAAQAGVR-----YAMQNPQSYVASNIAGFVNLLEVCKSVN-------PQPSIVWASSSSVYGLNTQVPFS 258 (469)
Q Consensus 193 --~~d~Vih~Aa~~~~~-----~~~~~~~~~~~~Nv~~~~~ll~aa~~~~-------~~~~~V~~SS~~vyg~~~~~~~~ 258 (469)
++|+||||||..... ...++.+..+++|+.++.++++++.... ..++||++||...+.+.
T Consensus 81 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~~------ 154 (261)
T 3n74_A 81 FGKVDILVNNAGIGHKPQNAELVEPEEFDRIVGVNVRGVYLMTSKLIPHFKENGAKGQECVILNVASTGAGRPR------ 154 (261)
T ss_dssp HSCCCEEEECCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTTCCEEEEEECCTTTTSCC------
T ss_pred cCCCCEEEECCccCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCchhhcCCC------
Confidence 679999999975421 2334556789999999999988764321 12379999998766422
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeecceecCCCCCCC--hHHHHHHHHHcCCceEEEeeCCCC
Q 012176 259 ESHRTDQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPDM--AYFFFTKDILQGKTIDVYKTQDDR 333 (469)
Q Consensus 259 E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~Gp~~~~~~--~~~~~~~~~~~g~~~~~~~~~~~~ 333 (469)
.....|+.+|.+.+.+++.++.+ .|+++++|+||.|.++...... ....+...+ ...
T Consensus 155 ------~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~------------~~~ 216 (261)
T 3n74_A 155 ------PNLAWYNATKGWVVSVTKALAIELAPAKIRVVALNPVAGETPLLTTFMGEDSEEIRKKF------------RDS 216 (261)
T ss_dssp ------TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEC-------------------------------------
T ss_pred ------CCccHHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCcccChhhhhhcccCcHHHHHHH------------hhc
Confidence 34567999999999999999877 4899999999999987443210 000111111 112
Q ss_pred cceEecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCCcccH
Q 012176 334 EVARDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTSPVPV 378 (469)
Q Consensus 334 ~~~~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~~vt~ 378 (469)
.....+++++|+|++++.++..... ...|+++++.+|..++-
T Consensus 217 ~~~~~~~~~~dva~~~~~l~s~~~~---~itG~~i~vdgG~~~~~ 258 (261)
T 3n74_A 217 IPMGRLLKPDDLAEAAAFLCSPQAS---MITGVALDVDGGRSIGG 258 (261)
T ss_dssp CTTSSCCCHHHHHHHHHHHTSGGGT---TCCSCEEEESTTTTC--
T ss_pred CCcCCCcCHHHHHHHHHHHcCCccc---CcCCcEEEecCCcccCC
Confidence 2334688999999999998864422 34569999999876643
|
| >3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.90 E-value=8.7e-23 Score=195.66 Aligned_cols=233 Identities=13% Similarity=0.084 Sum_probs=163.0
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhc-cCCeEEEEecCCCHHHHHHhhccC-
Q 012176 115 RPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQ-KHQVFIVEGDLNDAPLLTKLFDVV- 192 (469)
Q Consensus 115 ~~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~v~~v~~Dl~d~~~l~~~~~~~- 192 (469)
..++|+||||||+|+||++++++|+++|++|+++++... ............ ...+.++.+|++|.++++++++.+
T Consensus 5 ~l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~ 81 (259)
T 3edm_A 5 RFTNRTIVVAGAGRDIGRACAIRFAQEGANVVLTYNGAA---EGAATAVAEIEKLGRSALAIKADLTNAAEVEAAISAAA 81 (259)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSSC---HHHHHHHHHHHTTTSCCEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCCH---HHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHH
Confidence 367899999999999999999999999999999955432 122222222211 347899999999999999988754
Q ss_pred ----CccEEEEcccccCh-----hhhccChHHHHHHHHHHHHHHHHHHHhcCC-CCeEEEEcCcccc-CCCCCCCCCCCC
Q 012176 193 ----PFTHVLHLAAQAGV-----RYAMQNPQSYVASNIAGFVNLLEVCKSVNP-QPSIVWASSSSVY-GLNTQVPFSESH 261 (469)
Q Consensus 193 ----~~d~Vih~Aa~~~~-----~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~-~~~~V~~SS~~vy-g~~~~~~~~E~~ 261 (469)
++|+||||||.... ....++++..+++|+.++.++++++..... .++||++||...+ .+.
T Consensus 82 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~--------- 152 (259)
T 3edm_A 82 DKFGEIHGLVHVAGGLIARKTIAEMDEAFWHQVLDVNLTSLFLTAKTALPKMAKGGAIVTFSSQAGRDGGG--------- 152 (259)
T ss_dssp HHHCSEEEEEECCCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCHHHHHCCS---------
T ss_pred HHhCCCCEEEECCCccCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEcCHHhccCCC---------
Confidence 67999999986422 123344567899999999999999876532 2389999998776 322
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHhC--CcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceEec
Q 012176 262 RTDQPASLYAATKKAGEEIAHTYNHIYG--LALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDF 339 (469)
Q Consensus 262 ~~~~p~~~Y~~sK~~~E~~~~~~~~~~g--i~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 339 (469)
.+...|+.+|.+.+.+++.++.+++ +++++|+||.|..+....... ..+...+. .......+
T Consensus 153 ---~~~~~Y~asKaa~~~l~~~la~e~~~~I~vn~v~PG~v~T~~~~~~~~-~~~~~~~~------------~~~p~~r~ 216 (259)
T 3edm_A 153 ---PGALAYATSKGAVMTFTRGLAKEVGPKIRVNAVCPGMISTTFHDTFTK-PEVRERVA------------GATSLKRE 216 (259)
T ss_dssp ---TTCHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCBCC-----------------------------------CC
T ss_pred ---CCcHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCcCcccccccC-hHHHHHHH------------hcCCCCCC
Confidence 3457899999999999999998864 999999999998874332100 11111111 12233457
Q ss_pred ccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCCcccH
Q 012176 340 TYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTSPVPV 378 (469)
Q Consensus 340 v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~~vt~ 378 (469)
.+++|+|++++.++..... -..|++|++.++...+.
T Consensus 217 ~~pedva~~v~~L~s~~~~---~itG~~i~vdGg~~~~~ 252 (259)
T 3edm_A 217 GSSEDVAGLVAFLASDDAA---YVTGACYDINGGVLFSE 252 (259)
T ss_dssp BCHHHHHHHHHHHHSGGGT---TCCSCEEEESBCSSBC-
T ss_pred cCHHHHHHHHHHHcCcccc---CccCCEEEECCCcCCCC
Confidence 7899999999998865422 34569999998875443
|
| >3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.90 E-value=1.3e-22 Score=196.27 Aligned_cols=240 Identities=15% Similarity=0.129 Sum_probs=168.8
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCC---------CChhHHHHHHHh-hccCCeEEEEecCCCHHH
Q 012176 115 RPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSY---------YDPSLKRARQKL-LQKHQVFIVEGDLNDAPL 184 (469)
Q Consensus 115 ~~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~---------~~~~~~~~~~~~-~~~~~v~~v~~Dl~d~~~ 184 (469)
..++|++|||||+|+||++++++|+++|++|++++|.... ............ .....+.++.+|++|+++
T Consensus 8 ~l~~k~~lVTGas~GIG~a~a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~ 87 (277)
T 3tsc_A 8 KLEGRVAFITGAARGQGRAHAVRMAAEGADIIAVDIAGKLPSCVPYDPASPDDLSETVRLVEAANRRIVAAVVDTRDFDR 87 (277)
T ss_dssp TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHHH
T ss_pred ccCCCEEEEECCccHHHHHHHHHHHHcCCEEEEEeccccccccccccccCHHHHHHHHHHHHhcCCeEEEEECCCCCHHH
Confidence 3678999999999999999999999999999999984321 111222221111 123578999999999999
Q ss_pred HHHhhccC-----CccEEEEcccccCh----hhhccChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEEcCccccCC
Q 012176 185 LTKLFDVV-----PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCK----SVNPQPSIVWASSSSVYGL 251 (469)
Q Consensus 185 l~~~~~~~-----~~d~Vih~Aa~~~~----~~~~~~~~~~~~~Nv~~~~~ll~aa~----~~~~~~~~V~~SS~~vyg~ 251 (469)
++++++.. ++|+||||||.... ..+.++++..+++|+.++.++++++. +.+..++||++||...+..
T Consensus 88 v~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~~ 167 (277)
T 3tsc_A 88 LRKVVDDGVAALGRLDIIVANAGVAAPQAWDDITPEDFRDVMDINVTGTWNTVMAGAPRIIEGGRGGSIILISSAAGMKM 167 (277)
T ss_dssp HHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTSC
T ss_pred HHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCCCEEEEEccHhhCCC
Confidence 99888753 67999999997543 22345567889999999999998854 3332348999999877643
Q ss_pred CCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCCCCChHHHHHHHHHcCCce-EEE
Q 012176 252 NTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTI-DVY 327 (469)
Q Consensus 252 ~~~~~~~E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~-~~~ 327 (469)
. .....|+.+|.+.+.+++.++.++ |+++++|+||.|.++...... .............. ...
T Consensus 168 ~------------~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~-~~~~~~~~~~~~~~~~~~ 234 (277)
T 3tsc_A 168 Q------------PFMIHYTASKHAVTGLARAFAAELGKHSIRVNSVHPGPVNTPMGSGDM-VTAVGQAMETNPQLSHVL 234 (277)
T ss_dssp C------------SSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSGGGSHHH-HHHHHHHHHTCGGGTTTT
T ss_pred C------------CCchhhHHHHHHHHHHHHHHHHHhCccCeEEEEEEeCCCcCCcccchh-hhhhhhcccccHHHHHHh
Confidence 2 345689999999999999998875 899999999999987543211 11111111111110 000
Q ss_pred eeCCCCcceEecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCC
Q 012176 328 KTQDDREVARDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTS 374 (469)
Q Consensus 328 ~~~~~~~~~~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~ 374 (469)
..... ..+.+++|+|++++.++..... -..|+++++.+|.
T Consensus 235 ---~~~~p-~r~~~pedvA~~v~~L~s~~~~---~itG~~i~vdGG~ 274 (277)
T 3tsc_A 235 ---TPFLP-DWVAEPEDIADTVCWLASDESR---KVTAAQIPVDQGS 274 (277)
T ss_dssp ---CCSSS-CSCBCHHHHHHHHHHHHSGGGT---TCCSCEEEESTTG
T ss_pred ---hhccC-CCCCCHHHHHHHHHHHhCcccc---CCcCCEEeeCCCc
Confidence 00111 2488999999999998865432 3456999998875
|
| >3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase, oxidoreductase, structural genomics; HET: P4C; 2.25A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.90 E-value=6.3e-23 Score=196.01 Aligned_cols=230 Identities=13% Similarity=0.047 Sum_probs=165.8
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccC--
Q 012176 115 RPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV-- 192 (469)
Q Consensus 115 ~~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~-- 192 (469)
...+|+||||||+|+||++++++|+++|++|+++++.............. ....++.++.+|++|.++++++++..
T Consensus 10 ~~~~k~vlITGas~giG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 87 (256)
T 3ezl_A 10 VMSQRIAYVTGGMGGIGTSICQRLHKDGFRVVAGCGPNSPRRVKWLEDQK--ALGFDFYASEGNVGDWDSTKQAFDKVKA 87 (256)
T ss_dssp ---CEEEEETTTTSHHHHHHHHHHHHTTEEEEEEECTTCSSHHHHHHHHH--HTTCCCEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHH--hcCCeeEEEecCCCCHHHHHHHHHHHHH
Confidence 36789999999999999999999999999999988544322111111111 12347899999999999999888754
Q ss_pred ---CccEEEEcccccChh----hhccChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEEcCccccCCCCCCCCCCCC
Q 012176 193 ---PFTHVLHLAAQAGVR----YAMQNPQSYVASNIAGFVNLLEVC----KSVNPQPSIVWASSSSVYGLNTQVPFSESH 261 (469)
Q Consensus 193 ---~~d~Vih~Aa~~~~~----~~~~~~~~~~~~Nv~~~~~ll~aa----~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~ 261 (469)
++|+||||||..... ...++.+..+++|+.++.++++++ ++.+.. +||++||...+.+.
T Consensus 88 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g-~iv~isS~~~~~~~--------- 157 (256)
T 3ezl_A 88 EVGEIDVLVNNAGITRDVVFRKMTREDWQAVIDTNLTSLFNVTKQVIDGMVERGWG-RIINISSVNGQKGQ--------- 157 (256)
T ss_dssp HTCCEEEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE-EEEEECCCCGGGSC---------
T ss_pred hcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCC-EEEEEcchhhccCC---------
Confidence 689999999975421 234556679999999988887775 344544 99999997766432
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceEe
Q 012176 262 RTDQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARD 338 (469)
Q Consensus 262 ~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 338 (469)
.+...|+.+|.+.+.+++.++.+ .|+++++|+||.|.++..... .+.+...+....++ ..
T Consensus 158 ---~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~--~~~~~~~~~~~~~~------------~~ 220 (256)
T 3ezl_A 158 ---FGQTNYSTAKAGIHGFTMSLAQEVATKGVTVNTVSPGYIGTDMVKAI--RPDVLEKIVATIPV------------RR 220 (256)
T ss_dssp ---SCCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHTS--CHHHHHHHHHHSTT------------SS
T ss_pred ---CCCcccHHHHHHHHHHHHHHHHHHHHhCCEEEEEEECcccCcccccc--CHHHHHHHHhcCCC------------CC
Confidence 34678999999999999999877 489999999999988633211 12333333333322 23
Q ss_pred cccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCCcc
Q 012176 339 FTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTSPV 376 (469)
Q Consensus 339 ~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~~v 376 (469)
+.+++|+|++++.++..... ...|++|++.+|..+
T Consensus 221 ~~~~~dva~~~~~l~s~~~~---~~tG~~i~vdgG~~~ 255 (256)
T 3ezl_A 221 LGSPDEIGSIVAWLASEESG---FSTGADFSLNGGLHM 255 (256)
T ss_dssp CBCHHHHHHHHHHHHSGGGT---TCCSCEEEESTTSCC
T ss_pred CcCHHHHHHHHHHHhCCccc---CCcCcEEEECCCEeC
Confidence 66799999999988764422 345699999987643
|
| >3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum} | Back alignment and structure |
|---|
Probab=99.90 E-value=6.8e-23 Score=198.30 Aligned_cols=227 Identities=12% Similarity=0.068 Sum_probs=168.3
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhh-ccCCeEEEEecCCCHHHHHHhhccC--
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLL-QKHQVFIVEGDLNDAPLLTKLFDVV-- 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~v~~v~~Dl~d~~~l~~~~~~~-- 192 (469)
.++|+||||||+|+||++++++|+++|++|++++|+.+.. ........ ...++.++.+|++|+++++++++.+
T Consensus 30 l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~----~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~ 105 (276)
T 3r1i_A 30 LSGKRALITGASTGIGKKVALAYAEAGAQVAVAARHSDAL----QVVADEIAGVGGKALPIRCDVTQPDQVRGMLDQMTG 105 (276)
T ss_dssp CTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSGGGG----HHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHH----HHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHH
Confidence 6789999999999999999999999999999999965432 22222221 2347899999999999999998854
Q ss_pred ---CccEEEEcccccChh----hhccChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEEcCccccCCCCCCCCCCCC
Q 012176 193 ---PFTHVLHLAAQAGVR----YAMQNPQSYVASNIAGFVNLLEVCKS----VNPQPSIVWASSSSVYGLNTQVPFSESH 261 (469)
Q Consensus 193 ---~~d~Vih~Aa~~~~~----~~~~~~~~~~~~Nv~~~~~ll~aa~~----~~~~~~~V~~SS~~vyg~~~~~~~~E~~ 261 (469)
++|+||||||..... ...++.+..+++|+.++.++++++.. .+..++||++||...+.....
T Consensus 106 ~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~~g~iv~isS~~~~~~~~~------- 178 (276)
T 3r1i_A 106 ELGGIDIAVCNAGIVSVQAMLDMPLEEFQRIQDTNVTGVFLTAQAAARAMVDQGLGGTIITTASMSGHIINIP------- 178 (276)
T ss_dssp HHSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTSCCCS-------
T ss_pred HcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECchHhcccCCC-------
Confidence 679999999975432 23345567889999999999988654 333248999999776532211
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceEe
Q 012176 262 RTDQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARD 338 (469)
Q Consensus 262 ~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 338 (469)
.+...|+.+|.+.+.+++.++.+ +|+++++|+||.|..+..... ..+........++ ..
T Consensus 179 ---~~~~~Y~asKaa~~~l~~~la~e~~~~gIrvn~v~PG~v~T~~~~~~---~~~~~~~~~~~p~------------~r 240 (276)
T 3r1i_A 179 ---QQVSHYCTSKAAVVHLTKAMAVELAPHQIRVNSVSPGYIRTELVEPL---ADYHALWEPKIPL------------GR 240 (276)
T ss_dssp ---SCCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCSTTTGGG---GGGHHHHGGGSTT------------SS
T ss_pred ---CCcchHHHHHHHHHHHHHHHHHHHhhcCcEEEEEeeCCCcCCccccc---hHHHHHHHhcCCC------------CC
Confidence 24578999999999999999987 589999999999998754421 1122222222222 23
Q ss_pred cccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCC
Q 012176 339 FTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTS 374 (469)
Q Consensus 339 ~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~ 374 (469)
+..++|+|++++.++..... -..|+++++.+|.
T Consensus 241 ~~~pedvA~~v~fL~s~~~~---~itG~~i~vdGG~ 273 (276)
T 3r1i_A 241 MGRPEELTGLYLYLASAASS---YMTGSDIVIDGGY 273 (276)
T ss_dssp CBCGGGSHHHHHHHHSGGGT---TCCSCEEEESTTT
T ss_pred CcCHHHHHHHHHHHcCcccc---CccCcEEEECcCc
Confidence 67789999999998865432 3456999998875
|
| >3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.90 E-value=9.3e-23 Score=198.06 Aligned_cols=234 Identities=16% Similarity=0.072 Sum_probs=166.8
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhc-cCCeEEEEecCCCHHHHHHhhccC--
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQ-KHQVFIVEGDLNDAPLLTKLFDVV-- 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~v~~v~~Dl~d~~~l~~~~~~~-- 192 (469)
.++++||||||+|+||++++++|+++|++|++++|+.+ ........... ...+.++.+|++|+++++++++.+
T Consensus 26 ~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~----~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~ 101 (283)
T 3v8b_A 26 QPSPVALITGAGSGIGRATALALAADGVTVGALGRTRT----EVEEVADEIVGAGGQAIALEADVSDELQMRNAVRDLVL 101 (283)
T ss_dssp -CCCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESSHH----HHHHHHHHHTTTTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHH----HHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHH
Confidence 56789999999999999999999999999999998542 22222222222 347899999999999999888764
Q ss_pred ---CccEEEEcccccCh-----hhhccChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEEcCccccCCCCCCCCCCC
Q 012176 193 ---PFTHVLHLAAQAGV-----RYAMQNPQSYVASNIAGFVNLLEVC----KSVNPQPSIVWASSSSVYGLNTQVPFSES 260 (469)
Q Consensus 193 ---~~d~Vih~Aa~~~~-----~~~~~~~~~~~~~Nv~~~~~ll~aa----~~~~~~~~~V~~SS~~vyg~~~~~~~~E~ 260 (469)
++|+||||||.... ....++++..+++|+.++.++++++ ++.+.. +||++||...+....
T Consensus 102 ~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g-~Iv~isS~~~~~~~~------- 173 (283)
T 3v8b_A 102 KFGHLDIVVANAGINGVWAPIDDLKPFEWDETIAVNLRGTFLTLHLTVPYLKQRGGG-AIVVVSSINGTRTFT------- 173 (283)
T ss_dssp HHSCCCEEEECCCCCCCBCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE-EEEEECCSBTTTBCC-------
T ss_pred HhCCCCEEEECCCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCc-eEEEEcChhhccCCC-------
Confidence 68999999997432 2334455688999999999999987 445544 999999977653111
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcce-
Q 012176 261 HRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVA- 336 (469)
Q Consensus 261 ~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~- 336 (469)
..+...|+.+|.+.+.+++.++.++ |+++++|+||.|..+........... ....+.... ......
T Consensus 174 ---~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~----~~~~~~~~~---~~~~p~~ 243 (283)
T 3v8b_A 174 ---TPGATAYTATKAAQVAIVQQLALELGKHHIRVNAVCPGAIETNISDNTKLRHEE----ETAIPVEWP---KGQVPIT 243 (283)
T ss_dssp ---STTCHHHHHHHHHHHHHHHHHHHHTTTTTEEEEEEEECSBSSCTTCCTTBCCHH----HHSCCCBCT---TCSCGGG
T ss_pred ---CCCchHHHHHHHHHHHHHHHHHHHhCccCcEEEEEEeCCCcCCcccccccccch----hhhhhhhhh---hhcCccc
Confidence 1345789999999999999999874 79999999999998854432110000 000111100 011111
Q ss_pred -EecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCC
Q 012176 337 -RDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTS 374 (469)
Q Consensus 337 -~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~ 374 (469)
..+..++|+|++++.++..... -..|+++++.+|.
T Consensus 244 ~~r~~~pedvA~~v~fL~s~~a~---~itG~~i~vdGG~ 279 (283)
T 3v8b_A 244 DGQPGRSEDVAELIRFLVSERAR---HVTGSPVWIDGGQ 279 (283)
T ss_dssp TTCCBCHHHHHHHHHHHTSGGGT---TCCSCEEEESTTH
T ss_pred cCCCCCHHHHHHHHHHHcCcccc---CCcCCEEEECcCc
Confidence 3467899999999998865422 3456999998874
|
| >4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=1.5e-23 Score=203.05 Aligned_cols=232 Identities=10% Similarity=0.027 Sum_probs=169.6
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhh--ccCCeEEEEecCCCHHHHHHhhccC
Q 012176 115 RPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLL--QKHQVFIVEGDLNDAPLLTKLFDVV 192 (469)
Q Consensus 115 ~~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~v~~v~~Dl~d~~~l~~~~~~~ 192 (469)
..++|+||||||+|+||++++++|+++|++|++++|+.+. ......... ...++.++.+|++|+++++++++.+
T Consensus 24 ~l~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~----~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~ 99 (277)
T 4fc7_A 24 LLRDKVAFITGGGSGIGFRIAEIFMRHGCHTVIASRSLPR----VLTAARKLAGATGRRCLPLSMDVRAPPAVMAAVDQA 99 (277)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESCHHH----HHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHH
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHH----HHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHH
Confidence 3678999999999999999999999999999999995431 112222211 2357999999999999999888754
Q ss_pred -----CccEEEEcccccCh----hhhccChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEEcCccccCCCCCCCCCC
Q 012176 193 -----PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCKS----VNPQPSIVWASSSSVYGLNTQVPFSE 259 (469)
Q Consensus 193 -----~~d~Vih~Aa~~~~----~~~~~~~~~~~~~Nv~~~~~ll~aa~~----~~~~~~~V~~SS~~vyg~~~~~~~~E 259 (469)
++|+||||||.... ....++++..+++|+.++.++++++.. .+. ++||++||...+.+.
T Consensus 100 ~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~-g~iv~isS~~~~~~~------- 171 (277)
T 4fc7_A 100 LKEFGRIDILINCAAGNFLCPAGALSFNAFKTVMDIDTSGTFNVSRVLYEKFFRDHG-GVIVNITATLGNRGQ------- 171 (277)
T ss_dssp HHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHHHC-EEEEEECCSHHHHTC-------
T ss_pred HHHcCCCCEEEECCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCC-CEEEEECchhhCCCC-------
Confidence 67999999996432 223455678999999999999998743 333 389999998765322
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCCCC-ChHHHHHHHHHcCCceEEEeeCCCCcc
Q 012176 260 SHRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPD-MAYFFFTKDILQGKTIDVYKTQDDREV 335 (469)
Q Consensus 260 ~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~ 335 (469)
.....|+.+|.+.+.+++.++.++ |+++++|+||.|.++..... ..............++
T Consensus 172 -----~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~p~----------- 235 (277)
T 4fc7_A 172 -----ALQVHAGSAKAAVDAMTRHLAVEWGPQNIRVNSLAPGPISGTEGLRRLGGPQASLSTKVTASPL----------- 235 (277)
T ss_dssp -----TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBSSSHHHHHHSCCHHHHHHHHHTSTT-----------
T ss_pred -----CCcHHHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEECCEecchhhhhccCCHHHHHHHhccCCC-----------
Confidence 345789999999999999998775 89999999999998631100 0001223333333332
Q ss_pred eEecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCCcccH
Q 012176 336 ARDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTSPVPV 378 (469)
Q Consensus 336 ~~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~~vt~ 378 (469)
..+..++|+|++++.++..... -..|+++++.+|..+++
T Consensus 236 -~r~~~p~dvA~~v~fL~s~~~~---~itG~~i~vdGG~~~~~ 274 (277)
T 4fc7_A 236 -QRLGNKTEIAHSVLYLASPLAS---YVTGAVLVADGGAWLTF 274 (277)
T ss_dssp -SSCBCHHHHHHHHHHHHSGGGT---TCCSCEEEESTTHHHHC
T ss_pred -CCCcCHHHHHHHHHHHcCCccC---CcCCCEEEECCCcccCC
Confidence 2366899999999998865422 34569999999876554
|
| >2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl carrier protein) reductase, short-chain dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=99.90 E-value=9.5e-23 Score=193.78 Aligned_cols=226 Identities=15% Similarity=0.084 Sum_probs=162.0
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhh-ccCCeEEEEecCCCHHHHHHhhccC--
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLL-QKHQVFIVEGDLNDAPLLTKLFDVV-- 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~v~~v~~Dl~d~~~l~~~~~~~-- 192 (469)
.++|+|+||||+|+||++++++|+++|++|++++|... ........... ...++.++.+|++|+++++++++..
T Consensus 2 l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~---~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 78 (246)
T 2uvd_A 2 LKGKVALVTGASRGIGRAIAIDLAKQGANVVVNYAGNE---QKANEVVDEIKKLGSDAIAVRADVANAEDVTNMVKQTVD 78 (246)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCH---HHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCH---HHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999998321 11121111111 1346889999999999999988753
Q ss_pred ---CccEEEEcccccCh----hhhccChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEEcCccccCCCCCCCCCCCC
Q 012176 193 ---PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCK----SVNPQPSIVWASSSSVYGLNTQVPFSESH 261 (469)
Q Consensus 193 ---~~d~Vih~Aa~~~~----~~~~~~~~~~~~~Nv~~~~~ll~aa~----~~~~~~~~V~~SS~~vyg~~~~~~~~E~~ 261 (469)
++|+||||||.... ....++++..+++|+.++.++++++. +.+.. +||++||...+.+.
T Consensus 79 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g-~iv~isS~~~~~~~--------- 148 (246)
T 2uvd_A 79 VFGQVDILVNNAGVTKDNLLMRMKEEEWDTVINTNLKGVFLCTKAVSRFMMRQRHG-RIVNIASVVGVTGN--------- 148 (246)
T ss_dssp HHSCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE-EEEEECCTHHHHCC---------
T ss_pred HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCc-EEEEECCHHhcCCC---------
Confidence 57999999997432 12334566789999999888777654 44544 99999997664321
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceEe
Q 012176 262 RTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARD 338 (469)
Q Consensus 262 ~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 338 (469)
.+...|+.+|.+.+.+++.++.++ |+++++|+||.|.++...... ......+....++ ..
T Consensus 149 ---~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~--~~~~~~~~~~~p~------------~~ 211 (246)
T 2uvd_A 149 ---PGQANYVAAKAGVIGLTKTSAKELASRNITVNAIAPGFIATDMTDVLD--ENIKAEMLKLIPA------------AQ 211 (246)
T ss_dssp ---TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBGGGCSSCCC--TTHHHHHHHTCTT------------CS
T ss_pred ---CCCchHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeccccCcchhhcC--HHHHHHHHhcCCC------------CC
Confidence 235689999999999999888664 899999999999887533211 1111222222221 23
Q ss_pred cccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCC
Q 012176 339 FTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTS 374 (469)
Q Consensus 339 ~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~ 374 (469)
+++++|+|++++.++..... -..|+++++.++.
T Consensus 212 ~~~~~dvA~~~~~l~s~~~~---~~tG~~~~vdgG~ 244 (246)
T 2uvd_A 212 FGEAQDIANAVTFFASDQSK---YITGQTLNVDGGM 244 (246)
T ss_dssp CBCHHHHHHHHHHHHSGGGT---TCCSCEEEESTTS
T ss_pred CcCHHHHHHHHHHHcCchhc---CCCCCEEEECcCc
Confidence 78999999999998865421 2346899998874
|
| >2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.90 E-value=1.2e-23 Score=202.32 Aligned_cols=229 Identities=15% Similarity=0.073 Sum_probs=163.1
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhc---cCCeEEEEecCCCHHHHHHhhccC
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQ---KHQVFIVEGDLNDAPLLTKLFDVV 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~---~~~v~~v~~Dl~d~~~l~~~~~~~ 192 (469)
.++|+|+||||+|+||++++++|+++|++|++++|+.+ ........... ..++.++.+|++|+++++++++.+
T Consensus 5 ~~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~----~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~v~~~~~~~ 80 (267)
T 2gdz_A 5 VNGKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLE----AGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKV 80 (267)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH----HHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHHCCCEEEEEECCHH----HHHHHHHHHHhhcCCCceEEEecCCCCHHHHHHHHHHH
Confidence 46789999999999999999999999999999998532 11111122211 236889999999999999988764
Q ss_pred -----CccEEEEcccccChhhhccChHHHHHHHHHHHHHHHHH----HHhcC--CCCeEEEEcCccccCCCCCCCCCCCC
Q 012176 193 -----PFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEV----CKSVN--PQPSIVWASSSSVYGLNTQVPFSESH 261 (469)
Q Consensus 193 -----~~d~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~a----a~~~~--~~~~~V~~SS~~vyg~~~~~~~~E~~ 261 (469)
++|+||||||... .++++..+++|+.++..+.++ +++.+ ..++||++||...+.+.
T Consensus 81 ~~~~g~id~lv~~Ag~~~----~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~--------- 147 (267)
T 2gdz_A 81 VDHFGRLDILVNNAGVNN----EKNWEKTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMSSLAGLMPV--------- 147 (267)
T ss_dssp HHHHSCCCEEEECCCCCC----SSSHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGGTSCC---------
T ss_pred HHHcCCCCEEEECCCCCC----hhhHHHHHhHHHHHHHHHHHHHHHHHHhccCCCCCEEEEeCCccccCCC---------
Confidence 6799999999743 367788999999976665554 44432 12489999998877532
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHH--H---HhCCcEEEEeecceecCCCCCCChHHH------HHHHHHcCCceEEEeeC
Q 012176 262 RTDQPASLYAATKKAGEEIAHTYN--H---IYGLALTGLRFFTVYGPWGRPDMAYFF------FTKDILQGKTIDVYKTQ 330 (469)
Q Consensus 262 ~~~~p~~~Y~~sK~~~E~~~~~~~--~---~~gi~~~ilRp~~v~Gp~~~~~~~~~~------~~~~~~~g~~~~~~~~~ 330 (469)
.+...|+.+|.+.+.+++.++ . ..|+++++|+||.|.++.......... +...+. .
T Consensus 148 ---~~~~~Y~~sK~a~~~~~~~~ala~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~--~-------- 214 (267)
T 2gdz_A 148 ---AQQPVYCASKHGIVGFTRSAALAANLMNSGVRLNAICPGFVNTAILESIEKEENMGQYIEYKDHIK--D-------- 214 (267)
T ss_dssp ---TTCHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEESCBSSHHHHGGGCHHHHGGGGGGHHHHH--H--------
T ss_pred ---CCCchHHHHHHHHHHHHHHHHHHHHhccCCcEEEEEecCcCcchhhhccccccccchhhhHHHHHH--H--------
Confidence 234679999999999998752 2 258999999999998862110000000 000000 0
Q ss_pred CCCcceEecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCCcccHHHH
Q 012176 331 DDREVARDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTSPVPVGRL 381 (469)
Q Consensus 331 ~~~~~~~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~~vt~~el 381 (469)
......+++++|+|++++.++... ...|++|++.+++.+++.|+
T Consensus 215 --~~~~~~~~~~~dvA~~v~~l~s~~-----~~~G~~~~v~gg~~~~~~~~ 258 (267)
T 2gdz_A 215 --MIKYYGILDPPLIANGLITLIEDD-----ALNGAIMKITTSKGIHFQDY 258 (267)
T ss_dssp --HHHHHCCBCHHHHHHHHHHHHHCT-----TCSSCEEEEETTTEEEECCC
T ss_pred --HhccccCCCHHHHHHHHHHHhcCc-----CCCCcEEEecCCCcccccCc
Confidence 011234789999999999998765 34569999999888777654
|
| >1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.90 E-value=1e-22 Score=196.08 Aligned_cols=228 Identities=15% Similarity=0.084 Sum_probs=163.3
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHh--hccCCeEEEEecCCCHHHHHHhhccC
Q 012176 115 RPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKL--LQKHQVFIVEGDLNDAPLLTKLFDVV 192 (469)
Q Consensus 115 ~~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~v~~v~~Dl~d~~~l~~~~~~~ 192 (469)
..++|+||||||+|+||++++++|+++|++|++++|+.+ ......... .....+.++.+|++|+++++++++.+
T Consensus 18 ~l~~k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~----~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~v~~~~~~~ 93 (267)
T 1vl8_A 18 DLRGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLE----EASEAAQKLTEKYGVETMAFRCDVSNYEEVKKLLEAV 93 (267)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH----HHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHH----HHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHH
Confidence 367899999999999999999999999999999999542 112111111 11346889999999999999888753
Q ss_pred -----CccEEEEcccccChh----hhccChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEEcCcc-ccCCCCCCCCC
Q 012176 193 -----PFTHVLHLAAQAGVR----YAMQNPQSYVASNIAGFVNLLEVCK----SVNPQPSIVWASSSS-VYGLNTQVPFS 258 (469)
Q Consensus 193 -----~~d~Vih~Aa~~~~~----~~~~~~~~~~~~Nv~~~~~ll~aa~----~~~~~~~~V~~SS~~-vyg~~~~~~~~ 258 (469)
++|+||||||..... ...++.+..+++|+.++.++++++. +.+. ++||++||.. .+.+.
T Consensus 94 ~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~-g~iv~isS~~~~~~~~------ 166 (267)
T 1vl8_A 94 KEKFGKLDTVVNAAGINRRHPAEEFPLDEFRQVIEVNLFGTYYVCREAFSLLRESDN-PSIINIGSLTVEEVTM------ 166 (267)
T ss_dssp HHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCSS-CEEEEECCGGGTCCCS------
T ss_pred HHHcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCC-cEEEEECCcchhccCC------
Confidence 679999999974321 2234456789999999999988864 3444 4999999976 32211
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcc
Q 012176 259 ESHRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREV 335 (469)
Q Consensus 259 E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 335 (469)
.+...|+.+|.+.+.+++.++.++ |+++++|+||.|.++..............+....++
T Consensus 167 ------~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~p~----------- 229 (267)
T 1vl8_A 167 ------PNISAYAASKGGVASLTKALAKEWGRYGIRVNVIAPGWYRTKMTEAVFSDPEKLDYMLKRIPL----------- 229 (267)
T ss_dssp ------SSCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCSTTTHHHHTCHHHHHHHHHTCTT-----------
T ss_pred ------CCChhHHHHHHHHHHHHHHHHHHhcccCeEEEEEEeccCccccccccccChHHHHHHHhhCCC-----------
Confidence 345689999999999999998774 899999999999887432100001222222222221
Q ss_pred eEecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCC
Q 012176 336 ARDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTS 374 (469)
Q Consensus 336 ~~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~ 374 (469)
..+.+++|+|++++.++..... ...|+++++.+|.
T Consensus 230 -~~~~~p~dvA~~v~~l~s~~~~---~itG~~i~vdGG~ 264 (267)
T 1vl8_A 230 -GRTGVPEDLKGVAVFLASEEAK---YVTGQIIFVDGGW 264 (267)
T ss_dssp -SSCBCGGGGHHHHHHHHSGGGT---TCCSCEEEESTTG
T ss_pred -CCCcCHHHHHHHHHHHcCcccc---CCcCCeEEECCCC
Confidence 2367899999999998865421 2456899998874
|
| >3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition, oxidoreductase; HET: NAD; 2.00A {Brevibacterium saccharolyticum} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.8e-22 Score=193.17 Aligned_cols=230 Identities=13% Similarity=0.012 Sum_probs=163.5
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhc-cCCeEEEEecCCCHHHHHHhhccC----
Q 012176 118 GMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQ-KHQVFIVEGDLNDAPLLTKLFDVV---- 192 (469)
Q Consensus 118 ~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~v~~v~~Dl~d~~~l~~~~~~~---- 192 (469)
+|+|+||||+|+||++++++|+++|++|++++|..+. ............ ..++.++.+|++|+++++++++.+
T Consensus 2 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~--~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 79 (258)
T 3a28_C 2 SKVAMVTGGAQGIGRGISEKLAADGFDIAVADLPQQE--EQAAETIKLIEAADQKAVFVGLDVTDKANFDSAIDEAAEKL 79 (258)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECGGGH--HHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcch--HHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 5799999999999999999999999999999985431 001222222211 347899999999999999888743
Q ss_pred -CccEEEEcccccChh----hhccChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEEcCccccCCCCCCCCCCCCCC
Q 012176 193 -PFTHVLHLAAQAGVR----YAMQNPQSYVASNIAGFVNLLEVCKS----VNPQPSIVWASSSSVYGLNTQVPFSESHRT 263 (469)
Q Consensus 193 -~~d~Vih~Aa~~~~~----~~~~~~~~~~~~Nv~~~~~ll~aa~~----~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~ 263 (469)
++|+||||||..... ...++++..+++|+.++.++++++.. .+..++||++||...+.+.
T Consensus 80 g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~----------- 148 (258)
T 3a28_C 80 GGFDVLVNNAGIAQIKPLLEVTEEDLKQIYSVNVFSVFFGIQAASRKFDELGVKGKIINAASIAAIQGF----------- 148 (258)
T ss_dssp TCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCCEEEEECCGGGTSCC-----------
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCCcEEEEECcchhccCC-----------
Confidence 579999999974331 23345667899999999999998765 3542499999998766422
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCCCC---------ChHHHHHHHHHcCCceEEEeeCC
Q 012176 264 DQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPD---------MAYFFFTKDILQGKTIDVYKTQD 331 (469)
Q Consensus 264 ~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~~~---------~~~~~~~~~~~~g~~~~~~~~~~ 331 (469)
.+...|+.+|.+.+.+++.++.++ |+++++|+||.|.++..... .....+...+....+
T Consensus 149 -~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------- 219 (258)
T 3a28_C 149 -PILSAYSTTKFAVRGLTQAAAQELAPKGHTVNAYAPGIVGTGMWEQIDAELSKINGKPIGENFKEYSSSIA-------- 219 (258)
T ss_dssp -TTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCSHHHHHHHHHHHHHHCCCTTHHHHHHHTTCT--------
T ss_pred -CCchhHHHHHHHHHHHHHHHHHHHHhhCeEEEEEECCccCChhhhhhhhhhccccCCchHHHHHHHHhcCC--------
Confidence 345689999999999999998764 89999999999987521100 000011111111111
Q ss_pred CCcceEecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCCcc
Q 012176 332 DREVARDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTSPV 376 (469)
Q Consensus 332 ~~~~~~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~~v 376 (469)
...+.+++|+|++++.++..... ...|+++++.++..+
T Consensus 220 ----~~r~~~p~dvA~~v~~l~s~~~~---~~tG~~i~vdGG~~~ 257 (258)
T 3a28_C 220 ----LGRPSVPEDVAGLVSFLASENSN---YVTGQVMLVDGGMLY 257 (258)
T ss_dssp ----TSSCBCHHHHHHHHHHHHSGGGT---TCCSCEEEESSSSCC
T ss_pred ----CCCccCHHHHHHHHHHHhCcccC---CCCCCEEEECCCEec
Confidence 12478899999999998865421 245689999887543
|
| >3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=7.6e-22 Score=191.78 Aligned_cols=236 Identities=14% Similarity=0.095 Sum_probs=169.6
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCC------------ChhHHHHHHHhh-ccCCeEEEEecCCC
Q 012176 115 RPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYY------------DPSLKRARQKLL-QKHQVFIVEGDLND 181 (469)
Q Consensus 115 ~~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~------------~~~~~~~~~~~~-~~~~v~~v~~Dl~d 181 (469)
..++|+|+||||+|+||++++++|+++|++|++++|+.... ...+........ ...++.++.+|++|
T Consensus 8 ~l~~k~~lVTGas~gIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~ 87 (286)
T 3uve_A 8 RVEGKVAFVTGAARGQGRSHAVRLAQEGADIIAVDICKPIRAGVVDTAIPASTPEDLAETADLVKGHNRRIVTAEVDVRD 87 (286)
T ss_dssp TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCSBTTBCCCSSCCCCHHHHHHHHHHHHTTTCCEEEEECCTTC
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeccccccccccccccccCCHHHHHHHHHHHhhcCCceEEEEcCCCC
Confidence 36789999999999999999999999999999999863211 112222222221 23478999999999
Q ss_pred HHHHHHhhccC-----CccEEEEcccccChh-----hhccChHHHHHHHHHHHHHHHHHHHhc----CCCCeEEEEcCcc
Q 012176 182 APLLTKLFDVV-----PFTHVLHLAAQAGVR-----YAMQNPQSYVASNIAGFVNLLEVCKSV----NPQPSIVWASSSS 247 (469)
Q Consensus 182 ~~~l~~~~~~~-----~~d~Vih~Aa~~~~~-----~~~~~~~~~~~~Nv~~~~~ll~aa~~~----~~~~~~V~~SS~~ 247 (469)
+++++++++.+ ++|+||||||..... ...++++..+++|+.++.++++++... +..++||++||..
T Consensus 88 ~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~ 167 (286)
T 3uve_A 88 YDALKAAVDSGVEQLGRLDIIVANAGIGNGGDTLDKTSEEDWTEMIDINLAGVWKTVKAGVPHMIAGGRGGSIILTSSVG 167 (286)
T ss_dssp HHHHHHHHHHHHHHHSCCCEEEECCCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGG
T ss_pred HHHHHHHHHHHHHHhCCCCEEEECCcccCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCcEEEEECchh
Confidence 99999888753 679999999974332 234556679999999999999986542 3234899999987
Q ss_pred ccCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeecceecCCCCCCChHHHH----------
Q 012176 248 VYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPDMAYFFF---------- 314 (469)
Q Consensus 248 vyg~~~~~~~~E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~Gp~~~~~~~~~~~---------- 314 (469)
.+.+. .....|+.+|.+.+.+++.++.+ +|+++++|+||.|..+..........+
T Consensus 168 ~~~~~------------~~~~~Y~asKaa~~~~~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~ 235 (286)
T 3uve_A 168 GLKAY------------PHTGHYVAAKHGVVGLMRAFGVELGQHMIRVNSVHPTHVKTPMLHNEGTFKMFRPDLENPGPD 235 (286)
T ss_dssp GTSCC------------TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSTTTSSHHHHHHHCTTSSSCCHH
T ss_pred hccCC------------CCccHHHHHHHHHHHHHHHHHHHhcccCeEEEEEecCcccCCcccccchhhhccccccccchh
Confidence 76432 34568999999999999999877 489999999999999865421111000
Q ss_pred --HHHHHcCCceEEEeeCCCCcceEecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCCcc
Q 012176 315 --TKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTSPV 376 (469)
Q Consensus 315 --~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~~v 376 (469)
........ ... ..+.+++|+|++++.++..... -..|+++++.+|..+
T Consensus 236 ~~~~~~~~~~----------~~p-~r~~~p~dvA~~v~fL~s~~a~---~itG~~i~vdGG~~l 285 (286)
T 3uve_A 236 DMAPICQMFH----------TLP-IPWVEPIDISNAVLFFASDEAR---YITGVTLPIDAGSCL 285 (286)
T ss_dssp HHHHHHHTTC----------SSS-CSCBCHHHHHHHHHHHHSGGGT---TCCSCEEEESTTGGG
T ss_pred hHHHHHHhhh----------ccC-CCcCCHHHHHHHHHHHcCcccc---CCcCCEEeECCcccc
Confidence 00000111 111 4578999999999998865422 345699999988643
|
| >1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol, oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A* 1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=1.4e-22 Score=193.51 Aligned_cols=219 Identities=15% Similarity=0.093 Sum_probs=159.8
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCc-EEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCH-HHHHHhhccC-
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDG-VLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDA-PLLTKLFDVV- 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~-~~l~~~~~~~- 192 (469)
.++|+|+||||+|+||++++++|+++|++ |++++|+... ...... .......++.++.+|++|+ ++++++++..
T Consensus 3 l~~k~vlVtGas~gIG~~~a~~l~~~G~~~v~~~~r~~~~--~~~~~l-~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 79 (254)
T 1sby_A 3 LTNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENP--TALAEL-KAINPKVNITFHTYDVTVPVAESKKLLKKIF 79 (254)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSCCH--HHHHHH-HHHCTTSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEecCchH--HHHHHH-HHhCCCceEEEEEEecCCChHHHHHHHHHHH
Confidence 56789999999999999999999999997 9999986531 111111 1111234788999999998 8888877643
Q ss_pred ----CccEEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCC------CCeEEEEcCccccCCCCCCCCCCCCC
Q 012176 193 ----PFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNP------QPSIVWASSSSVYGLNTQVPFSESHR 262 (469)
Q Consensus 193 ----~~d~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~------~~~~V~~SS~~vyg~~~~~~~~E~~~ 262 (469)
++|+||||||.. ..++.+..+++|+.++.++++++..... .++||++||...+.+.
T Consensus 80 ~~~g~id~lv~~Ag~~----~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~---------- 145 (254)
T 1sby_A 80 DQLKTVDILINGAGIL----DDHQIERTIAINFTGLVNTTTAILDFWDKRKGGPGGIIANICSVTGFNAI---------- 145 (254)
T ss_dssp HHHSCCCEEEECCCCC----CTTCHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGGTSCC----------
T ss_pred HhcCCCCEEEECCccC----CHHHHhhhheeeehhHHHHHHHHHHHHHHhcCCCCCEEEEECchhhccCC----------
Confidence 579999999974 2467889999999999999998764321 2379999998877432
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeecceecCCCCCCC-hH--HHHHHHHHcCCceEEEeeCCCCcce
Q 012176 263 TDQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPDM-AY--FFFTKDILQGKTIDVYKTQDDREVA 336 (469)
Q Consensus 263 ~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~Gp~~~~~~-~~--~~~~~~~~~g~~~~~~~~~~~~~~~ 336 (469)
.+...|+.+|.+.|.+++.++.+ +|+++++|+||.|.++...... .. ...........
T Consensus 146 --~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~-------------- 209 (254)
T 1sby_A 146 --HQVPVYSASKAAVVSFTNSLAKLAPITGVTAYSINPGITRTPLVHTFNSWLDVEPRVAELLLSH-------------- 209 (254)
T ss_dssp --TTSHHHHHHHHHHHHHHHHHHHHHHHHSEEEEEEEECSEESHHHHSCCCGGGSCTTHHHHHTTS--------------
T ss_pred --CCchHHHHHHHHHHHHHHHHHHHhccCCeEEEEEecCCccCccccccchhhhhhHHHHHHHhcC--------------
Confidence 34568999999999999998876 5899999999999987321100 00 00011111111
Q ss_pred EecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCC
Q 012176 337 RDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTS 374 (469)
Q Consensus 337 ~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~ 374 (469)
.+.+++|+|++++.++... ..|++|++.++.
T Consensus 210 -~~~~~~dvA~~i~~~~~~~------~~G~~~~v~gG~ 240 (254)
T 1sby_A 210 -PTQTSEQCGQNFVKAIEAN------KNGAIWKLDLGT 240 (254)
T ss_dssp -CCEEHHHHHHHHHHHHHHC------CTTCEEEEETTE
T ss_pred -CCCCHHHHHHHHHHHHHcC------CCCCEEEEeCCc
Confidence 2337999999999988632 345899998873
|
| >1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann fold, short-chain dehydrogenase, oxidoreductase; 1.22A {Comamonas testosteroni} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.90 E-value=1e-22 Score=194.49 Aligned_cols=226 Identities=15% Similarity=0.080 Sum_probs=161.6
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccC---
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~--- 192 (469)
.++|+|+||||+|+||++++++|+++|++|++++|+.+ ......... ..++.++.+|++|+++++++++.+
T Consensus 4 l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~----~~~~~~~~~--~~~~~~~~~D~~~~~~v~~~~~~~~~~ 77 (253)
T 1hxh_A 4 LQGKVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEA----AGQQLAAEL--GERSMFVRHDVSSEADWTLVMAAVQRR 77 (253)
T ss_dssp TTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECSCHH----HHHHHHHHH--CTTEEEECCCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHH----HHHHHHHHc--CCceEEEEccCCCHHHHHHHHHHHHHH
Confidence 56789999999999999999999999999999998532 122211221 347899999999999999888764
Q ss_pred --CccEEEEcccccChh----hhccChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEEcCccccCCCCCCCCCCCCC
Q 012176 193 --PFTHVLHLAAQAGVR----YAMQNPQSYVASNIAGFVNLLEVC----KSVNPQPSIVWASSSSVYGLNTQVPFSESHR 262 (469)
Q Consensus 193 --~~d~Vih~Aa~~~~~----~~~~~~~~~~~~Nv~~~~~ll~aa----~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~ 262 (469)
++|+||||||..... ...++++..+++|+.++..+++++ ++.+ ++||++||...+.+.
T Consensus 78 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~--g~iv~isS~~~~~~~---------- 145 (253)
T 1hxh_A 78 LGTLNVLVNNAGILLPGDMETGRLEDFSRLLKINTESVFIGCQQGIAAMKETG--GSIINMASVSSWLPI---------- 145 (253)
T ss_dssp HCSCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTC--EEEEEECCGGGTSCC----------
T ss_pred cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHhhcHHHHHHHHHHHHHHHHcC--CEEEEEcchhhcCCC----------
Confidence 579999999974321 233456678999999888777654 3445 499999998877432
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHh-----CCcEEEEeecceecCCCCCCChHHHHHHH-HHcCCceEEEeeCCCCcce
Q 012176 263 TDQPASLYAATKKAGEEIAHTYNHIY-----GLALTGLRFFTVYGPWGRPDMAYFFFTKD-ILQGKTIDVYKTQDDREVA 336 (469)
Q Consensus 263 ~~~p~~~Y~~sK~~~E~~~~~~~~~~-----gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~ 336 (469)
.+...|+.+|.+.|.+++.++.++ |+++++||||.|++|....... ...... +..... ....
T Consensus 146 --~~~~~Y~~sK~a~~~~~~~la~e~~~~~~gi~v~~v~Pg~v~t~~~~~~~~-~~~~~~~~~~~~~---------~~p~ 213 (253)
T 1hxh_A 146 --EQYAGYSASKAAVSALTRAAALSCRKQGYAIRVNSIHPDGIYTPMMQASLP-KGVSKEMVLHDPK---------LNRA 213 (253)
T ss_dssp --TTBHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEESEECCHHHHHHSC-TTCCHHHHBCBTT---------TBTT
T ss_pred --CCCccHHHHHHHHHHHHHHHHHHhhhcCCCeEEEEEEeCCccCchhhhccc-hhhhHHHHhhhhc---------cCcc
Confidence 345689999999999999998764 8999999999999973210000 000001 111000 0112
Q ss_pred EecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCC
Q 012176 337 RDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTS 374 (469)
Q Consensus 337 ~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~ 374 (469)
..+.+++|+|++++.++..+.. ...|+++++.++.
T Consensus 214 ~~~~~~~dvA~~~~~l~s~~~~---~~tG~~~~vdgG~ 248 (253)
T 1hxh_A 214 GRAYMPERIAQLVLFLASDESS---VMSGSELHADNSI 248 (253)
T ss_dssp CCEECHHHHHHHHHHHHSGGGT---TCCSCEEEESSSC
T ss_pred CCCCCHHHHHHHHHHHcCcccc---CCCCcEEEECCCc
Confidence 3478899999999999865422 2456899998874
|
| >4iiu_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAP; 2.10A {Escherichia coli} PDB: 4iiv_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=1.9e-22 Score=194.09 Aligned_cols=225 Identities=12% Similarity=0.044 Sum_probs=166.5
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhh-ccCCeEEEEecCCCHHHHHHhhccC--
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLL-QKHQVFIVEGDLNDAPLLTKLFDVV-- 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~v~~v~~Dl~d~~~l~~~~~~~-- 192 (469)
..+|+|+||||+|+||++++++|+++|++|+++.+... ........... ...++.++.+|++|+++++++++..
T Consensus 24 l~~k~vlVTGas~gIG~~la~~l~~~G~~v~i~~~r~~---~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 100 (267)
T 4iiu_A 24 AMSRSVLVTGASKGIGRAIARQLAADGFNIGVHYHRDA---AGAQETLNAIVANGGNGRLLSFDVANREQCREVLEHEIA 100 (267)
T ss_dssp -CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCH---HHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCch---HHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHH
Confidence 56789999999999999999999999999988765332 11111112211 2357999999999999999888754
Q ss_pred ---CccEEEEcccccChh----hhccChHHHHHHHHHHHHHHHHHHH-----hcCCCCeEEEEcCccccCCCCCCCCCCC
Q 012176 193 ---PFTHVLHLAAQAGVR----YAMQNPQSYVASNIAGFVNLLEVCK-----SVNPQPSIVWASSSSVYGLNTQVPFSES 260 (469)
Q Consensus 193 ---~~d~Vih~Aa~~~~~----~~~~~~~~~~~~Nv~~~~~ll~aa~-----~~~~~~~~V~~SS~~vyg~~~~~~~~E~ 260 (469)
++|+||||||..... ...++.+..+++|+.++.++++++. +.+. ++||++||...+.+.
T Consensus 101 ~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~-g~iv~isS~~~~~~~-------- 171 (267)
T 4iiu_A 101 QHGAWYGVVSNAGIARDAAFPALSNDDWDAVIHTNLDSFYNVIQPCIMPMIGARQG-GRIITLSSVSGVMGN-------- 171 (267)
T ss_dssp HHCCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSC-EEEEEECCHHHHHCC--------
T ss_pred HhCCccEEEECCCCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCC-cEEEEEcchHhccCC--------
Confidence 679999999975432 2345667899999999999999863 3333 499999997665322
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceE
Q 012176 261 HRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVAR 337 (469)
Q Consensus 261 ~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 337 (469)
.+...|+.+|.+.+.+++.++.++ |+++++|+||.|.++..... ...........++ .
T Consensus 172 ----~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~---~~~~~~~~~~~p~------------~ 232 (267)
T 4iiu_A 172 ----RGQVNYSAAKAGIIGATKALAIELAKRKITVNCIAPGLIDTGMIEME---ESALKEAMSMIPM------------K 232 (267)
T ss_dssp ----TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSTTCCCC---HHHHHHHHHTCTT------------C
T ss_pred ----CCCchhHHHHHHHHHHHHHHHHHHhhcCeEEEEEEEeeecCCccccc---HHHHHHHHhcCCC------------C
Confidence 345789999999999999988775 89999999999999865533 2334444444332 2
Q ss_pred ecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCC
Q 012176 338 DFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTS 374 (469)
Q Consensus 338 ~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~ 374 (469)
.+..++|+|++++.++..... ...|+++++.+|.
T Consensus 233 ~~~~~edva~~~~~L~s~~~~---~itG~~i~vdGG~ 266 (267)
T 4iiu_A 233 RMGQAEEVAGLASYLMSDIAG---YVTRQVISINGGM 266 (267)
T ss_dssp SCBCHHHHHHHHHHHHSGGGT---TCCSCEEEESTTC
T ss_pred CCcCHHHHHHHHHHHhCCccc---CccCCEEEeCCCc
Confidence 367799999999998865422 3456999998863
|
| >3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain dehydrogenases/reductases (SDR), X-RAY crystallography, oxidoreductase; 2.69A {Candida parapsilosis} | Back alignment and structure |
|---|
Probab=99.90 E-value=2.5e-22 Score=194.36 Aligned_cols=227 Identities=13% Similarity=0.023 Sum_probs=165.1
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhh-ccCCeEEEEecCCCHHHHHHhhccC--
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLL-QKHQVFIVEGDLNDAPLLTKLFDVV-- 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~v~~v~~Dl~d~~~l~~~~~~~-- 192 (469)
.++|+||||||+|+||++++++|+++|++|++++|+..... ....... ...++.++.+|++|.++++++++..
T Consensus 32 l~~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~~~~~----~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 107 (279)
T 3ctm_A 32 LKGKVASVTGSSGGIGWAVAEAYAQAGADVAIWYNSHPADE----KAEHLQKTYGVHSKAYKCNISDPKSVEETISQQEK 107 (279)
T ss_dssp CTTCEEEETTTTSSHHHHHHHHHHHHTCEEEEEESSSCCHH----HHHHHHHHHCSCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHH----HHHHHHHhcCCcceEEEeecCCHHHHHHHHHHHHH
Confidence 56789999999999999999999999999999999764321 1111111 1347899999999999999888763
Q ss_pred ---CccEEEEcccccCh------hhhccChHHHHHHHHHH----HHHHHHHHHhcCCCCeEEEEcCccccCCCCCCCCCC
Q 012176 193 ---PFTHVLHLAAQAGV------RYAMQNPQSYVASNIAG----FVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSE 259 (469)
Q Consensus 193 ---~~d~Vih~Aa~~~~------~~~~~~~~~~~~~Nv~~----~~~ll~aa~~~~~~~~~V~~SS~~vyg~~~~~~~~E 259 (469)
++|+||||||.... ....++.+..+++|+.+ ++.+++.+++.+.. +||++||...+....
T Consensus 108 ~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~-~iv~isS~~~~~~~~------ 180 (279)
T 3ctm_A 108 DFGTIDVFVANAGVTWTQGPEIDVDNYDSWNKIISVDLNGVYYCSHNIGKIFKKNGKG-SLIITSSISGKIVNI------ 180 (279)
T ss_dssp HHSCCSEEEECGGGSTTC--CCCSSHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCC-EEEEECCCTTSCC--------
T ss_pred HhCCCCEEEECCcccccCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCC-eEEEECchHhccCCC------
Confidence 47999999997543 23344556789999999 55666667766655 999999987653210
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcce
Q 012176 260 SHRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVA 336 (469)
Q Consensus 260 ~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 336 (469)
..+...|+.+|.+.|.+++.++.++ + ++++|+||.|.++...... ..+...+....+ .
T Consensus 181 ----~~~~~~Y~~sK~a~~~~~~~la~e~~~~~-~v~~v~Pg~v~t~~~~~~~--~~~~~~~~~~~p------------~ 241 (279)
T 3ctm_A 181 ----PQLQAPYNTAKAACTHLAKSLAIEWAPFA-RVNTISPGYIDTDITDFAS--KDMKAKWWQLTP------------L 241 (279)
T ss_dssp -----CCHHHHHHHHHHHHHHHHHHHHHTTTTC-EEEEEEECSBSSTTTSSCC--HHHHHHHHHHST------------T
T ss_pred ----CCCcccHHHHHHHHHHHHHHHHHHhcccC-CEEEEeccCCccccccccC--hHHHHHHHHhCC------------c
Confidence 1345789999999999999998874 6 9999999999987543211 122222221111 1
Q ss_pred EecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCCc
Q 012176 337 RDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTSP 375 (469)
Q Consensus 337 ~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~~ 375 (469)
..+++++|+|++++.++..... ...|+++++.++..
T Consensus 242 ~~~~~~~dvA~~~~~l~s~~~~---~~tG~~i~vdgG~~ 277 (279)
T 3ctm_A 242 GREGLTQELVGGYLYLASNAST---FTTGSDVVIDGGYT 277 (279)
T ss_dssp CSCBCGGGTHHHHHHHHSGGGT---TCCSCEEEESTTCC
T ss_pred cCCcCHHHHHHHHHHHhCcccc---CccCCEEEECCCee
Confidence 2378899999999999875421 24569999998753
|
| >3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.3e-22 Score=200.17 Aligned_cols=242 Identities=14% Similarity=0.117 Sum_probs=169.0
Q ss_pred CCCCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCC--------ChhHHHHHHHhh-ccCCeEEEEecCCCHH
Q 012176 113 PRRPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYY--------DPSLKRARQKLL-QKHQVFIVEGDLNDAP 183 (469)
Q Consensus 113 ~~~~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~--------~~~~~~~~~~~~-~~~~v~~v~~Dl~d~~ 183 (469)
+...++|+||||||+|+||+++++.|+++|++|++++|..... ...+........ ....+.++.+|++|++
T Consensus 41 m~~l~gk~~lVTGas~GIG~aia~~la~~G~~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~ 120 (317)
T 3oec_A 41 MNRLQGKVAFITGAARGQGRTHAVRLAQDGADIVAIDLCRQQPNLDYAQGSPEELKETVRLVEEQGRRIIARQADVRDLA 120 (317)
T ss_dssp -CTTTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEECCCCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHH
T ss_pred hhccCCCEEEEeCCCcHHHHHHHHHHHHCCCeEEEEecccccccccccccCHHHHHHHHHHHHhcCCeEEEEECCCCCHH
Confidence 3446789999999999999999999999999999998863211 112222211111 2347899999999999
Q ss_pred HHHHhhccC-----CccEEEEcccccCh----hhhccChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEEcCccccC
Q 012176 184 LLTKLFDVV-----PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCKS----VNPQPSIVWASSSSVYG 250 (469)
Q Consensus 184 ~l~~~~~~~-----~~d~Vih~Aa~~~~----~~~~~~~~~~~~~Nv~~~~~ll~aa~~----~~~~~~~V~~SS~~vyg 250 (469)
+++++++.+ ++|+||||||.... ....++++..+++|+.++.++++++.. .+..++||++||...+.
T Consensus 121 ~v~~~~~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~g~Iv~isS~~~~~ 200 (317)
T 3oec_A 121 SLQAVVDEALAEFGHIDILVSNVGISNQGEVVSLTDQQWSDILQTNLIGAWHACRAVLPSMIERGQGGSVIFVSSTVGLR 200 (317)
T ss_dssp HHHHHHHHHHHHHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTCSCEEEEEECCGGGSS
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCCEEEEECcHHhcC
Confidence 999988754 68999999997543 223455668899999999999998743 33234899999987764
Q ss_pred CCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCCCCChHHHHHHHHHcCC--ce-
Q 012176 251 LNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGK--TI- 324 (469)
Q Consensus 251 ~~~~~~~~E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~--~~- 324 (469)
+. .....|+.+|.+.+.+++.++.++ ||++++|+||.|.++..... .+...+.... +.
T Consensus 201 ~~------------~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~----~~~~~~~~~~~~~~~ 264 (317)
T 3oec_A 201 GA------------PGQSHYAASKHGVQGLMLSLANEVGRHNIRVNSVNPGAVNTEMALNE----KLLKMFLPHLENPTR 264 (317)
T ss_dssp CC------------TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBSSHHHHCH----HHHHHHCTTCSSCCH
T ss_pred CC------------CCCcchHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCcccCccccch----hhhhhhhhhccccch
Confidence 32 345789999999999999999875 89999999999998632211 0111110000 00
Q ss_pred ----EEEeeCCCCcceEecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCCc
Q 012176 325 ----DVYKTQDDREVARDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTSP 375 (469)
Q Consensus 325 ----~~~~~~~~~~~~~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~~ 375 (469)
..+. ........+++++|+|++++.++..... -..|+++++.+|..
T Consensus 265 ~~~~~~~~--~~~~~p~~~~~pedvA~av~fL~s~~a~---~itG~~i~vdGG~~ 314 (317)
T 3oec_A 265 EDAAELFS--QLTLLPIPWVEPEDVSNAVAWLASDEAR---YIHGAAIPVDGGQL 314 (317)
T ss_dssp HHHHHHHT--TTCSSSSSSBCHHHHHHHHHHHTSGGGT---TCCSCEEEESTTGG
T ss_pred hHHHHHHh--hhccCCCCCCCHHHHHHHHHHHcCCccc---CCCCCEEEECcchh
Confidence 0000 0011115688999999999988765422 34569999998853
|
| >3tl3_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 1.85A {Mycobacterium ulcerans} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.1e-22 Score=194.50 Aligned_cols=223 Identities=14% Similarity=0.088 Sum_probs=162.2
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccC---
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~--- 192 (469)
.++|+||||||+|+||++++++|+++|++|++++|..+ ..... . ...+.++.+|++|+++++++++..
T Consensus 7 l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~-------~~~~~-~-~~~~~~~~~D~~~~~~v~~~~~~~~~~ 77 (257)
T 3tl3_A 7 IRDAVAVVTGGASGLGLATTKRLLDAGAQVVVLDIRGE-------DVVAD-L-GDRARFAAADVTDEAAVASALDLAETM 77 (257)
T ss_dssp ---CEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCH-------HHHHH-T-CTTEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred ecCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCchH-------HHHHh-c-CCceEEEECCCCCHHHHHHHHHHHHHh
Confidence 56789999999999999999999999999999998321 11111 1 347999999999999999888743
Q ss_pred -CccEEEEcccccChh--------hhccChHHHHHHHHHHHHHHHHHHHhc-----------CCCCeEEEEcCccccCCC
Q 012176 193 -PFTHVLHLAAQAGVR--------YAMQNPQSYVASNIAGFVNLLEVCKSV-----------NPQPSIVWASSSSVYGLN 252 (469)
Q Consensus 193 -~~d~Vih~Aa~~~~~--------~~~~~~~~~~~~Nv~~~~~ll~aa~~~-----------~~~~~~V~~SS~~vyg~~ 252 (469)
++|+||||||..... ...++++..+++|+.++..+++++... ...++||++||...+.+.
T Consensus 78 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~ 157 (257)
T 3tl3_A 78 GTLRIVVNCAGTGNAIRVLSRDGVFSLAAFRKIVDINLVGSFNVLRLAAERIAKTEPVGPNAEERGVIINTASVAAFDGQ 157 (257)
T ss_dssp SCEEEEEECGGGSHHHHHHHHTCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCC--CCCCSEEEEEECCCC--CCH
T ss_pred CCCCEEEECCCCCCCcccccccccCCHHHHHHHHHHccHHHHHHHHHHHHHHHHhcccccccCCCcEEEEEcchhhcCCC
Confidence 679999999974321 234556789999999999999987643 222489999998766422
Q ss_pred CCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEee
Q 012176 253 TQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKT 329 (469)
Q Consensus 253 ~~~~~~E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~ 329 (469)
.+...|+.+|.+.+.+++.++.++ |+++++|+||.|..+...... ......+....+.
T Consensus 158 ------------~~~~~Y~asKaa~~~~~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~--~~~~~~~~~~~~~----- 218 (257)
T 3tl3_A 158 ------------IGQAAYSASKGGVVGMTLPIARDLASHRIRVMTIAPGLFDTPLLASLP--EEARASLGKQVPH----- 218 (257)
T ss_dssp ------------HHHHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTC---C--HHHHHHHHHTSSS-----
T ss_pred ------------CCCccHHHHHHHHHHHHHHHHHHhcccCcEEEEEEecCccChhhhhcc--HHHHHHHHhcCCC-----
Confidence 234679999999999999998774 899999999999987543211 2233333333221
Q ss_pred CCCCcceEecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCCccc
Q 012176 330 QDDREVARDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTSPVP 377 (469)
Q Consensus 330 ~~~~~~~~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~~vt 377 (469)
...+.+++|+|++++.++.++ ...|+++++.+|..++
T Consensus 219 ------~~r~~~p~dva~~v~~l~s~~-----~itG~~i~vdGG~~~~ 255 (257)
T 3tl3_A 219 ------PSRLGNPDEYGALAVHIIENP-----MLNGEVIRLDGAIRMA 255 (257)
T ss_dssp ------SCSCBCHHHHHHHHHHHHHCT-----TCCSCEEEESTTC---
T ss_pred ------CCCccCHHHHHHHHHHHhcCC-----CCCCCEEEECCCccCC
Confidence 024678999999999998763 4556999999886544
|
| >3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=99.89 E-value=6.7e-22 Score=193.55 Aligned_cols=235 Identities=15% Similarity=0.090 Sum_probs=169.2
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCC--------ChhHHHHHHHhh-ccCCeEEEEecCCCHHHH
Q 012176 115 RPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYY--------DPSLKRARQKLL-QKHQVFIVEGDLNDAPLL 185 (469)
Q Consensus 115 ~~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~--------~~~~~~~~~~~~-~~~~v~~v~~Dl~d~~~l 185 (469)
..++|++|||||+|+||.+++++|+++|++|++++|+.... ...+........ ...++.++.+|++|++++
T Consensus 25 ~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v 104 (299)
T 3t7c_A 25 KVEGKVAFITGAARGQGRSHAITLAREGADIIAIDVCKQLDGVKLPMSTPDDLAETVRQVEALGRRIIASQVDVRDFDAM 104 (299)
T ss_dssp TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHH
T ss_pred ccCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEecccccccccccccCHHHHHHHHHHHHhcCCceEEEECCCCCHHHH
Confidence 46789999999999999999999999999999999874321 112222222221 234799999999999999
Q ss_pred HHhhccC-----CccEEEEcccccChh-----hhccChHHHHHHHHHHHHHHHHHHHhc----CCCCeEEEEcCccccCC
Q 012176 186 TKLFDVV-----PFTHVLHLAAQAGVR-----YAMQNPQSYVASNIAGFVNLLEVCKSV----NPQPSIVWASSSSVYGL 251 (469)
Q Consensus 186 ~~~~~~~-----~~d~Vih~Aa~~~~~-----~~~~~~~~~~~~Nv~~~~~ll~aa~~~----~~~~~~V~~SS~~vyg~ 251 (469)
+++++.+ ++|+||||||..... ...++++..+++|+.++..+++++... +..++||++||...+.+
T Consensus 105 ~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~g~Iv~isS~~~~~~ 184 (299)
T 3t7c_A 105 QAAVDDGVTQLGRLDIVLANAALASEGTRLNRMDPKTWRDMIDVNLNGAWITARVAIPHIMAGKRGGSIVFTSSIGGLRG 184 (299)
T ss_dssp HHHHHHHHHHHSCCCEEEECCCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTSCEEEEEECCGGGTSC
T ss_pred HHHHHHHHHHhCCCCEEEECCCCCCCCCchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEECChhhccC
Confidence 9888753 679999999974432 234556789999999999999986542 32348999999877643
Q ss_pred CCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCCCCChH------------HHHHH
Q 012176 252 NTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAY------------FFFTK 316 (469)
Q Consensus 252 ~~~~~~~E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~~~~~~------------~~~~~ 316 (469)
. .....|+.+|.+.+.+++.++.++ ||++++|+||.|.++........ ..+..
T Consensus 185 ~------------~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (299)
T 3t7c_A 185 A------------ENIGNYIASKHGLHGLMRTMALELGPRNIRVNIVCPSSVATPMLLNEPTYRMFRPDLENPTVEDFQV 252 (299)
T ss_dssp C------------TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCBSSTTTSSHHHHHHHCTTSSSCCHHHHHH
T ss_pred C------------CCcchHHHHHHHHHHHHHHHHHHhcccCcEEEEEecCCccCccccccchhhhhhhhhccchhhHHHH
Confidence 2 345789999999999999998875 89999999999999865421110 00000
Q ss_pred HHHcCCceEEEeeCCCCcceEecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCCc
Q 012176 317 DILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTSP 375 (469)
Q Consensus 317 ~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~~ 375 (469)
....... .. ..+..++|+|++++.++..... -..|+++++.+|..
T Consensus 253 ~~~~~~~----------~p-~r~~~pedvA~~v~fL~s~~a~---~itG~~i~vdGG~~ 297 (299)
T 3t7c_A 253 ASRQMHV----------LP-IPYVEPADISNAILFLVSDDAR---YITGVSLPVDGGAL 297 (299)
T ss_dssp HHHHHSS----------SS-CSCBCHHHHHHHHHHHHSGGGT---TCCSCEEEESTTGG
T ss_pred Hhhhhcc----------cC-cCCCCHHHHHHHHHHHhCcccc---cCcCCEEeeCCCcc
Confidence 0000000 01 3477899999999999865432 34569999998864
|
| >3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444} | Back alignment and structure |
|---|
Probab=99.89 E-value=7.6e-23 Score=202.11 Aligned_cols=224 Identities=17% Similarity=0.029 Sum_probs=149.6
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhc---cCCeEEEEecCCCHHHHHHhhcc
Q 012176 115 RPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQ---KHQVFIVEGDLNDAPLLTKLFDV 191 (469)
Q Consensus 115 ~~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~---~~~v~~v~~Dl~d~~~l~~~~~~ 191 (469)
..++++||||||+|+||.+++++|+++|++|++++|+.+. .......... ...+.++.+|++|.++++++++.
T Consensus 5 ~l~~k~vlVTGas~gIG~~la~~l~~~G~~Vv~~~r~~~~----~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~v~~~~~~ 80 (319)
T 3ioy_A 5 DFAGRTAFVTGGANGVGIGLVRQLLNQGCKVAIADIRQDS----IDKALATLEAEGSGPEVMGVQLDVASREGFKMAADE 80 (319)
T ss_dssp CCTTCEEEEETTTSTHHHHHHHHHHHTTCEEEEEESCHHH----HHHHHHHHHHHTCGGGEEEEECCTTCHHHHHHHHHH
T ss_pred CCCCCEEEEcCCchHHHHHHHHHHHHCCCEEEEEECCHHH----HHHHHHHHHhcCCCCeEEEEECCCCCHHHHHHHHHH
Confidence 3578899999999999999999999999999999995432 2222222111 22789999999999999998875
Q ss_pred C-----CccEEEEcccccChh----hhccChHHHHHHHHHHHHHHHHHHHhcC---------CCCeEEEEcCccccCCCC
Q 012176 192 V-----PFTHVLHLAAQAGVR----YAMQNPQSYVASNIAGFVNLLEVCKSVN---------PQPSIVWASSSSVYGLNT 253 (469)
Q Consensus 192 ~-----~~d~Vih~Aa~~~~~----~~~~~~~~~~~~Nv~~~~~ll~aa~~~~---------~~~~~V~~SS~~vyg~~~ 253 (469)
+ ++|+||||||..... ...++.+.++++|+.|+.++++++.... ..++||++||.+.+.+.
T Consensus 81 ~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~g~iV~isS~a~~~~~- 159 (319)
T 3ioy_A 81 VEARFGPVSILCNNAGVNLFQPIEESSYDDWDWLLGVNLHGVVNGVTTFVPRMVERVKAGEQKGGHVVNTASMAAFLAA- 159 (319)
T ss_dssp HHHHTCCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTTSCCCCEEEEECCGGGTCCC-
T ss_pred HHHhCCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhccCCCCcEEEEecccccccCC-
Confidence 4 679999999974321 2334566799999999999999875432 23489999998776532
Q ss_pred CCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeC
Q 012176 254 QVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQ 330 (469)
Q Consensus 254 ~~~~~E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~ 330 (469)
.....|+.+|.+.+.+++.++.++ |+++++|+||.|.++...........+.............
T Consensus 160 -----------~~~~~Y~aSKaal~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~-- 226 (319)
T 3ioy_A 160 -----------GSPGIYNTTKFAVRGLSESLHYSLLKYEIGVSVLCPGLVKSYIYASDDIRPDALKGEVKPVDKTAVE-- 226 (319)
T ss_dssp -----------SSSHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEECCCCBC-----------------------------
T ss_pred -----------CCCHHHHHHHHHHHHHHHHHHHHhhhcCCEEEEEEcCeEccCcccccccCchhhcccccchhHHHHH--
Confidence 234679999998888888776553 8999999999999875433211111111111000000000
Q ss_pred CCCcceEecccHHHHHHHHHHHhccC
Q 012176 331 DDREVARDFTYIDDVVKGCVGATGSG 356 (469)
Q Consensus 331 ~~~~~~~~~v~v~Dva~~~~~~~~~~ 356 (469)
.-.......++++|+|+.++.+++++
T Consensus 227 ~~~~~~~~~~~pe~vA~~~~~al~~~ 252 (319)
T 3ioy_A 227 RLAGVHEFGMEPDVIGARVIEAMKAN 252 (319)
T ss_dssp --CCGGGSSBCHHHHHHHHHHHHHTT
T ss_pred HHHHhhhcCCCHHHHHHHHHHHHHcC
Confidence 00111112279999999999999876
|
| >2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A {Chlorobium tepidum} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.89 E-value=2.5e-22 Score=190.27 Aligned_cols=215 Identities=13% Similarity=0.100 Sum_probs=159.4
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHCCC-------cEEEEeCCCCCCChhHHHHHHHhhc-cCCeEEEEecCCCHHHHHHhh
Q 012176 118 GMTVLVTGAAGFVGSHCSLALKKRGD-------GVLGLDNFNSYYDPSLKRARQKLLQ-KHQVFIVEGDLNDAPLLTKLF 189 (469)
Q Consensus 118 ~~~VlVtGatG~IG~~l~~~L~~~G~-------~V~~~~r~~~~~~~~~~~~~~~~~~-~~~v~~v~~Dl~d~~~l~~~~ 189 (469)
+|+|+||||+|+||++++++|+++|+ +|++++|+.. ........... ..++.++.+|++|++++++++
T Consensus 2 ~k~vlITGasggiG~~la~~l~~~G~~~~~~~~~V~~~~r~~~----~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~ 77 (244)
T 2bd0_A 2 KHILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAA----DLEKISLECRAEGALTDTITADISDMADVRRLT 77 (244)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHH----HHHHHHHHHHTTTCEEEEEECCTTSHHHHHHHH
T ss_pred CCEEEEECCCChHHHHHHHHHHHhcCcccccceEEEEEeCCHH----HHHHHHHHHHccCCeeeEEEecCCCHHHHHHHH
Confidence 57899999999999999999999999 9999998532 12222222111 346889999999999999888
Q ss_pred ccC-----CccEEEEcccccChh----hhccChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEEcCccccCCCCCCC
Q 012176 190 DVV-----PFTHVLHLAAQAGVR----YAMQNPQSYVASNIAGFVNLLEVCKS----VNPQPSIVWASSSSVYGLNTQVP 256 (469)
Q Consensus 190 ~~~-----~~d~Vih~Aa~~~~~----~~~~~~~~~~~~Nv~~~~~ll~aa~~----~~~~~~~V~~SS~~vyg~~~~~~ 256 (469)
+.. ++|+||||||..... ...++.+..+++|+.++.++++++.. .+.. +||++||..++.+.
T Consensus 78 ~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~-~iv~isS~~~~~~~---- 152 (244)
T 2bd0_A 78 THIVERYGHIDCLVNNAGVGRFGALSDLTEEDFDYTMNTNLKGTFFLTQALFALMERQHSG-HIFFITSVAATKAF---- 152 (244)
T ss_dssp HHHHHHTSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE-EEEEECCGGGTSCC----
T ss_pred HHHHHhCCCCCEEEEcCCcCCcCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCC-EEEEEecchhcCCC----
Confidence 742 579999999974321 23345667899999999999998743 3443 99999998877532
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCC
Q 012176 257 FSESHRTDQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDR 333 (469)
Q Consensus 257 ~~E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 333 (469)
.+...|+.+|.+.|.+++.++.+ +|+++++||||.|++|....... . .
T Consensus 153 --------~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~------------~---------~ 203 (244)
T 2bd0_A 153 --------RHSSIYCMSKFGQRGLVETMRLYARKCNVRITDVQPGAVYTPMWGKVDD------------E---------M 203 (244)
T ss_dssp --------TTCHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCBCSTTTCCCCS------------T---------T
T ss_pred --------CCCchhHHHHHHHHHHHHHHHHHhhccCcEEEEEECCCccchhhhhccc------------c---------c
Confidence 34578999999999999888765 48999999999999985432100 0 0
Q ss_pred cceEecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCCc
Q 012176 334 EVARDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTSP 375 (469)
Q Consensus 334 ~~~~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~~ 375 (469)
...+++++|+|++++.++..+.. ...++++...+++.
T Consensus 204 --~~~~~~~~dva~~~~~l~~~~~~---~~~g~~~~~~~~~~ 240 (244)
T 2bd0_A 204 --QALMMMPEDIAAPVVQAYLQPSR---TVVEEIILRPTSGD 240 (244)
T ss_dssp --GGGSBCHHHHHHHHHHHHTSCTT---EEEEEEEEEETTCC
T ss_pred --cccCCCHHHHHHHHHHHHhCCcc---ccchheEEeccccc
Confidence 12578999999999999876532 22345555555443
|
| >2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.89 E-value=2.6e-22 Score=192.82 Aligned_cols=225 Identities=17% Similarity=0.142 Sum_probs=166.7
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccC---
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~--- 192 (469)
.++|+|+||||+|+||++++++|+++|++|++++|+.+ ....... .+. .++.++.+|++|+++++++++.+
T Consensus 4 l~~k~vlITGas~gIG~aia~~l~~~G~~V~~~~r~~~----~~~~~~~-~~~-~~~~~~~~D~~~~~~v~~~~~~~~~~ 77 (263)
T 2a4k_A 4 LSGKTILVTGAASGIGRAALDLFAREGASLVAVDREER----LLAEAVA-ALE-AEAIAVVADVSDPKAVEAVFAEALEE 77 (263)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHH----HHHHHHH-TCC-SSEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHH----HHHHHHH-Hhc-CceEEEEcCCCCHHHHHHHHHHHHHH
Confidence 56789999999999999999999999999999999532 1111111 111 47889999999999999888764
Q ss_pred --CccEEEEcccccChh----hhccChHHHHHHHHHHHHHHHHHHHhcCC-CCeEEEEcCccccCCCCCCCCCCCCCCCC
Q 012176 193 --PFTHVLHLAAQAGVR----YAMQNPQSYVASNIAGFVNLLEVCKSVNP-QPSIVWASSSSVYGLNTQVPFSESHRTDQ 265 (469)
Q Consensus 193 --~~d~Vih~Aa~~~~~----~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~-~~~~V~~SS~~vyg~~~~~~~~E~~~~~~ 265 (469)
++|+||||||..... ...++.+..+++|+.++.++++++..... .++||++||...++ . .
T Consensus 78 ~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~-~------------~ 144 (263)
T 2a4k_A 78 FGRLHGVAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVLEEGGSLVLTGSVAGLG-A------------F 144 (263)
T ss_dssp HSCCCEEEEGGGGTTTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEECCCTTCC-H------------H
T ss_pred cCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEecchhcC-C------------C
Confidence 679999999974321 22344567899999999999999876531 24999999988762 1 2
Q ss_pred CCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceEecccH
Q 012176 266 PASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYI 342 (469)
Q Consensus 266 p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v 342 (469)
+...|+.+|.+.+.+++.++.++ |+++++||||.|.++...... ..+...+....++ ..+.++
T Consensus 145 ~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~--~~~~~~~~~~~p~------------~~~~~p 210 (263)
T 2a4k_A 145 GLAHYAAGKLGVVGLARTLALELARKGVRVNVLLPGLIQTPMTAGLP--PWAWEQEVGASPL------------GRAGRP 210 (263)
T ss_dssp HHHHHHHCSSHHHHHHHHHHHHHTTTTCEEEEEEECSBCCGGGTTSC--HHHHHHHHHTSTT------------CSCBCH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHhhhhCcEEEEEEeCcCcCchhhhcC--HHHHHHHHhcCCC------------CCCcCH
Confidence 34679999999999999988764 899999999999997543211 2222333333222 236789
Q ss_pred HHHHHHHHHHhccCCCCCCCCCceEEEeCCCCcc
Q 012176 343 DDVVKGCVGATGSGGKKRGPAQLRVYNLGNTSPV 376 (469)
Q Consensus 343 ~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~~v 376 (469)
+|+|++++.++..... -..|+++++.++..+
T Consensus 211 ~dvA~~v~~l~s~~~~---~~tG~~i~vdgG~~~ 241 (263)
T 2a4k_A 211 EEVAQAALFLLSEESA---YITGQALYVDGGRSI 241 (263)
T ss_dssp HHHHHHHHHHHSGGGT---TCCSCEEEESTTTTT
T ss_pred HHHHHHHHHHhCcccc---CCcCCEEEECCCccc
Confidence 9999999998865421 245689999988643
|
| >1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent oxidoreductase (SDR family), structural genomics, PSI; 2.60A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.89 E-value=1.2e-22 Score=192.74 Aligned_cols=213 Identities=12% Similarity=0.027 Sum_probs=151.9
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCC--CcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccC--
Q 012176 117 NGMTVLVTGAAGFVGSHCSLALKKRG--DGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV-- 192 (469)
Q Consensus 117 ~~~~VlVtGatG~IG~~l~~~L~~~G--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~-- 192 (469)
++|+|+||||+|+||++++++|+++| ++|++++|+.... ... ... ...++.++.+|++|.++++++++..
T Consensus 2 ~~k~vlItGasggiG~~la~~l~~~g~~~~V~~~~r~~~~~----~~l-~~~-~~~~~~~~~~D~~~~~~~~~~~~~~~~ 75 (250)
T 1yo6_A 2 SPGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKA----TEL-KSI-KDSRVHVLPLTVTCDKSLDTFVSKVGE 75 (250)
T ss_dssp CCSEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESSGGGC----HHH-HTC-CCTTEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCEEEEecCCchHHHHHHHHHHhcCCCcEEEEEecCHHHH----HHH-Hhc-cCCceEEEEeecCCHHHHHHHHHHHHH
Confidence 46899999999999999999999999 9999999965432 111 111 2457999999999999999888743
Q ss_pred -----CccEEEEcccccC-h----hhhccChHHHHHHHHHHHHHHHHHHHhc----------CC----CCeEEEEcCccc
Q 012176 193 -----PFTHVLHLAAQAG-V----RYAMQNPQSYVASNIAGFVNLLEVCKSV----------NP----QPSIVWASSSSV 248 (469)
Q Consensus 193 -----~~d~Vih~Aa~~~-~----~~~~~~~~~~~~~Nv~~~~~ll~aa~~~----------~~----~~~~V~~SS~~v 248 (469)
++|+||||||... . ....++.+..+++|+.++.++++++... +. .++||++||...
T Consensus 76 ~~g~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~ 155 (250)
T 1yo6_A 76 IVGSDGLSLLINNAGVLLSYGTNTEPNRAVIAEQLDVNTTSVVLLTQKLLPLLKNAASKESGDQLSVSRAAVITISSGLG 155 (250)
T ss_dssp HHGGGCCCEEEECCCCCCCBCTTSCCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHHHSSCSSCCCTTTCEEEEECCGGG
T ss_pred hcCCCCCcEEEECCcccCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcccccCCCcccCCCcEEEEeccCcc
Confidence 5799999999754 1 1233455678999999999999887543 30 249999999876
Q ss_pred cCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceE
Q 012176 249 YGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTID 325 (469)
Q Consensus 249 yg~~~~~~~~E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~ 325 (469)
+..... +.++. .+...|+.+|.+.|.+++.++.++ |+++++||||.|.++....
T Consensus 156 ~~~~~~----~~~~~-~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~------------------ 212 (250)
T 1yo6_A 156 SITDNT----SGSAQ-FPVLAYRMSKAAINMFGRTLAVDLKDDNVLVVNFCPGWVQTNLGGK------------------ 212 (250)
T ss_dssp CSTTCC----STTSS-SCBHHHHHHHHHHHHHHHHHHHHTGGGTCEEEEEECCCC-------------------------
T ss_pred ccCCcc----ccccc-CCccHHHHHHHHHHHHHHHHHHHhccCCeEEEEEcCCceecCCCCC------------------
Confidence 643211 11111 356789999999999999998875 8999999999998863221
Q ss_pred EEeeCCCCcceEecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCC
Q 012176 326 VYKTQDDREVARDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGN 372 (469)
Q Consensus 326 ~~~~~~~~~~~~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~ 372 (469)
..+++++|+|+.++.++..... ...|+.+.+.+
T Consensus 213 -----------~~~~~~~~~a~~~~~~~~~~~~---~~~G~~~~~~g 245 (250)
T 1yo6_A 213 -----------NAALTVEQSTAELISSFNKLDN---SHNGRFFMRNL 245 (250)
T ss_dssp -----------------HHHHHHHHHHHTTCCG---GGTTCEEETTE
T ss_pred -----------CCCCCHHHHHHHHHHHHhcccc---cCCCeEEEECC
Confidence 1246789999999999976532 12346665544
|
| >3uce_A Dehydrogenase; rossmann fold, oxidoreductase; HET: NDP; 1.80A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=99.89 E-value=9.2e-23 Score=190.94 Aligned_cols=209 Identities=11% Similarity=0.015 Sum_probs=161.6
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccC-Cc
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV-PF 194 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~-~~ 194 (469)
.++|+++||||+|+||++++++|+++|++|++++|... +|++|+++++++++.. ++
T Consensus 4 ~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~-----------------------~D~~~~~~v~~~~~~~g~i 60 (223)
T 3uce_A 4 SDKTVYVVLGGTSGIGAELAKQLESEHTIVHVASRQTG-----------------------LDISDEKSVYHYFETIGAF 60 (223)
T ss_dssp -CCEEEEEETTTSHHHHHHHHHHCSTTEEEEEESGGGT-----------------------CCTTCHHHHHHHHHHHCSE
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEecCCcc-----------------------cCCCCHHHHHHHHHHhCCC
Confidence 56789999999999999999999999999999998332 7999999999998764 67
Q ss_pred cEEEEcccccCh-----hhhccChHHHHHHHHHHHHHHHHHHHhcCC-CCeEEEEcCccccCCCCCCCCCCCCCCCCCCC
Q 012176 195 THVLHLAAQAGV-----RYAMQNPQSYVASNIAGFVNLLEVCKSVNP-QPSIVWASSSSVYGLNTQVPFSESHRTDQPAS 268 (469)
Q Consensus 195 d~Vih~Aa~~~~-----~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~-~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~ 268 (469)
|+||||||.... ....++++..+++|+.++.++++++..... .++||++||...+.+. .+..
T Consensus 61 d~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~------------~~~~ 128 (223)
T 3uce_A 61 DHLIVTAGSYAPAGKVVDVEVTQAKYAFDTKFWGAVLAAKHGARYLKQGGSITLTSGMLSRKVV------------ANTY 128 (223)
T ss_dssp EEEEECCCCCCCCSCTTTSCHHHHHHHHHHHHHHHHHHHHHHGGGEEEEEEEEEECCGGGTSCC------------TTCH
T ss_pred CEEEECCCCCCCCCCcccCCHHHHHhhheeeeeeHHHHHHHHHhhccCCeEEEEecchhhccCC------------CCch
Confidence 999999997521 233455667899999999999999876421 2389999998876532 3457
Q ss_pred hHHHHHHHHHHHHHHHHHHhC-CcEEEEeecceecCCCCCCC--hHHHHHHHHHcCCceEEEeeCCCCcceEecccHHHH
Q 012176 269 LYAATKKAGEEIAHTYNHIYG-LALTGLRFFTVYGPWGRPDM--AYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDV 345 (469)
Q Consensus 269 ~Y~~sK~~~E~~~~~~~~~~g-i~~~ilRp~~v~Gp~~~~~~--~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dv 345 (469)
.|+.+|.+.+.+++.++.+++ +++++|+||.|.++...... ....+........++ ..+.+++|+
T Consensus 129 ~Y~asK~a~~~~~~~la~e~~~i~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~dv 196 (223)
T 3uce_A 129 VKAAINAAIEATTKVLAKELAPIRVNAISPGLTKTEAYKGMNADDRDAMYQRTQSHLPV------------GKVGEASDI 196 (223)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSEEEEEEECSBCSGGGTTSCHHHHHHHHHHHHHHSTT------------CSCBCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhcCcEEEEEEeCCCcchhhhhcchhhHHHHHHHHhhcCCC------------CCccCHHHH
Confidence 899999999999999998876 99999999999987543221 112233333333322 346789999
Q ss_pred HHHHHHHhccCCCCCCCCCceEEEeCCCCcc
Q 012176 346 VKGCVGATGSGGKKRGPAQLRVYNLGNTSPV 376 (469)
Q Consensus 346 a~~~~~~~~~~~~~~~~~~~~iyni~~~~~v 376 (469)
|++++.++... ...|+++++.+|..+
T Consensus 197 A~~~~~l~~~~-----~~tG~~i~vdgG~~~ 222 (223)
T 3uce_A 197 AMAYLFAIQNS-----YMTGTVIDVDGGALL 222 (223)
T ss_dssp HHHHHHHHHCT-----TCCSCEEEESTTGGG
T ss_pred HHHHHHHccCC-----CCCCcEEEecCCeec
Confidence 99999998743 355699999988654
|
| >1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet of seven strands in the order 3214567; HET: NDP; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.89 E-value=1.2e-22 Score=196.85 Aligned_cols=228 Identities=13% Similarity=0.076 Sum_probs=164.6
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhc-cC---CeEEEEecCCCHHHHHHhhcc
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQ-KH---QVFIVEGDLNDAPLLTKLFDV 191 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~-~~---~v~~v~~Dl~d~~~l~~~~~~ 191 (469)
.++|+|+||||+|+||++++++|+++|++|++++|+.+ ........... .. ++.++.+|++|+++++++++.
T Consensus 4 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~----~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~ 79 (280)
T 1xkq_A 4 FSNKTVIITGSSNGIGRTTAILFAQEGANVTITGRSSE----RLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINS 79 (280)
T ss_dssp TTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHH----HHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHH
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHH----HHHHHHHHHHHcCCCCcceEEEEecCCCHHHHHHHHHH
Confidence 56789999999999999999999999999999999542 12222222211 12 689999999999999988875
Q ss_pred C-----CccEEEEcccccCh--------hhhccChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEEcCccccCCCCC
Q 012176 192 V-----PFTHVLHLAAQAGV--------RYAMQNPQSYVASNIAGFVNLLEVCKS----VNPQPSIVWASSSSVYGLNTQ 254 (469)
Q Consensus 192 ~-----~~d~Vih~Aa~~~~--------~~~~~~~~~~~~~Nv~~~~~ll~aa~~----~~~~~~~V~~SS~~vyg~~~~ 254 (469)
+ ++|+||||||.... ....++++..+++|+.++.++++++.. .+ ++||++||...+....
T Consensus 80 ~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~--g~iv~isS~~~~~~~~- 156 (280)
T 1xkq_A 80 TLKQFGKIDVLVNNAGAAIPDAFGTTGTDQGIDIYHKTLKLNLQAVIEMTKKVKPHLVASK--GEIVNVSSIVAGPQAQ- 156 (280)
T ss_dssp HHHHHSCCCEEEECCCCCCCCTTCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEECCGGGSSSCC-
T ss_pred HHHhcCCCCEEEECCCCCCCCCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHhhcCC--CcEEEecCccccCCCC-
Confidence 3 57999999997432 123345667899999999999998764 33 4999999987764320
Q ss_pred CCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeecceecCCCCCC--Ch-----HHHHHHHHHcCCce
Q 012176 255 VPFSESHRTDQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPD--MA-----YFFFTKDILQGKTI 324 (469)
Q Consensus 255 ~~~~E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~Gp~~~~~--~~-----~~~~~~~~~~g~~~ 324 (469)
.+...|+.+|.+.+.+++.++.+ +|+++++|+||.|+++..... .. ...+...+....+
T Consensus 157 ----------~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~p- 225 (280)
T 1xkq_A 157 ----------PDFLYYAIAKAALDQYTRSTAIDLAKFGIRVNSVSPGMVETGFTNAMGMPDQASQKFYNFMASHKECIP- 225 (280)
T ss_dssp ----------CSSHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCBCSSHHHHTTCCHHHHHHHHHHHHHCTTTCT-
T ss_pred ----------CcccHHHHHHHHHHHHHHHHHHHhccCCeEEEEEeeCcCcCCcccccccccccccchHHHHHHHHcCCC-
Confidence 23468999999999999999865 489999999999999742211 00 0112222111111
Q ss_pred EEEeeCCCCcceEecccHHHHHHHHHHHhccC-CCCCCCCCceEEEeCCCCc
Q 012176 325 DVYKTQDDREVARDFTYIDDVVKGCVGATGSG-GKKRGPAQLRVYNLGNTSP 375 (469)
Q Consensus 325 ~~~~~~~~~~~~~~~v~v~Dva~~~~~~~~~~-~~~~~~~~~~iyni~~~~~ 375 (469)
...+.+++|+|++++.++... .. ...|+++++.++..
T Consensus 226 -----------~~~~~~pedvA~~v~~l~s~~~~~---~~tG~~i~vdgG~~ 263 (280)
T 1xkq_A 226 -----------IGAAGKPEHIANIILFLADRNLSF---YILGQSIVADGGTS 263 (280)
T ss_dssp -----------TSSCBCHHHHHHHHHHHHCHHHHT---TCCSCEEEESTTGG
T ss_pred -----------CCCCCCHHHHHHHHHHhcCccccc---CccCCeEEECCCcc
Confidence 124789999999999988643 21 23469999998854
|
| >3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A | Back alignment and structure |
|---|
Probab=99.89 E-value=2.3e-22 Score=193.88 Aligned_cols=231 Identities=14% Similarity=0.117 Sum_probs=167.3
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhh-ccCCeEEEEecCCCHHHHHHhhccC-
Q 012176 115 RPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLL-QKHQVFIVEGDLNDAPLLTKLFDVV- 192 (469)
Q Consensus 115 ~~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~v~~v~~Dl~d~~~l~~~~~~~- 192 (469)
..++|++|||||+|+||++++++|+++|++|+++++... ........... ...++.++.+|++|+++++++++.+
T Consensus 15 ~l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~ 91 (270)
T 3is3_A 15 RLDGKVALVTGSGRGIGAAVAVHLGRLGAKVVVNYANST---KDAEKVVSEIKALGSDAIAIKADIRQVPEIVKLFDQAV 91 (270)
T ss_dssp CCTTCEEEESCTTSHHHHHHHHHHHHTTCEEEEEESSCH---HHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHH
T ss_pred CcCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCCH---HHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHH
Confidence 467899999999999999999999999999999887432 11122222221 1347899999999999999988764
Q ss_pred ----CccEEEEcccccChh----hhccChHHHHHHHHHHHHHHHHHHHhcCC-CCeEEEEcCccccCCCCCCCCCCCCCC
Q 012176 193 ----PFTHVLHLAAQAGVR----YAMQNPQSYVASNIAGFVNLLEVCKSVNP-QPSIVWASSSSVYGLNTQVPFSESHRT 263 (469)
Q Consensus 193 ----~~d~Vih~Aa~~~~~----~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~-~~~~V~~SS~~vyg~~~~~~~~E~~~~ 263 (469)
++|+||||||..... ...++++..+++|+.++.++++++..... .++||++||...... .
T Consensus 92 ~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS~~~~~~-----------~ 160 (270)
T 3is3_A 92 AHFGHLDIAVSNSGVVSFGHLKDVTEEEFDRVFSLNTRGQFFVAREAYRHLTEGGRIVLTSSNTSKDF-----------S 160 (270)
T ss_dssp HHHSCCCEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECCTTTTTC-----------C
T ss_pred HHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEEEeCchhccC-----------C
Confidence 689999999975432 23456678999999999999999876532 248999999663211 1
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCCC----------CChHHHHHHHHHcCCceEEEeeC
Q 012176 264 DQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRP----------DMAYFFFTKDILQGKTIDVYKTQ 330 (469)
Q Consensus 264 ~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~~----------~~~~~~~~~~~~~g~~~~~~~~~ 330 (469)
..+...|+.+|.+.+.+++.++.++ |+++++|+||.|.++.... ..........+....++
T Consensus 161 ~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~------ 234 (270)
T 3is3_A 161 VPKHSLYSGSKGAVDSFVRIFSKDCGDKKITVNAVAPGGTVTDMFHEVSHHYIPNGTSYTAEQRQQMAAHASPL------ 234 (270)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSTTHHHHGGGGSTTGGGSCHHHHHHHHHHHSTT------
T ss_pred CCCCchhHHHHHHHHHHHHHHHHHhcccCeEEEEEEeCCccChhhhhhhhhccccccccchHHHHHHHHhcCCC------
Confidence 1345789999999999999998874 8999999999999874220 00112222222222222
Q ss_pred CCCcceEecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCC
Q 012176 331 DDREVARDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTS 374 (469)
Q Consensus 331 ~~~~~~~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~ 374 (469)
..+.+++|+|++++.++..... -..|+++++.+|.
T Consensus 235 ------~r~~~p~dvA~~v~~L~s~~~~---~itG~~i~vdGG~ 269 (270)
T 3is3_A 235 ------HRNGWPQDVANVVGFLVSKEGE---WVNGKVLTLDGGA 269 (270)
T ss_dssp ------CSCBCHHHHHHHHHHHTSGGGT---TCCSCEEEESTTC
T ss_pred ------CCCCCHHHHHHHHHHHcCCccC---CccCcEEEeCCCC
Confidence 2467799999999998865422 3456999998874
|
| >4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus} | Back alignment and structure |
|---|
Probab=99.89 E-value=2.5e-22 Score=193.93 Aligned_cols=210 Identities=17% Similarity=0.135 Sum_probs=147.5
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccC--
Q 012176 115 RPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV-- 192 (469)
Q Consensus 115 ~~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~-- 192 (469)
...+|+||||||+|+||++++++|+++|++|++++|+.+ ......... ..++.++.+|++|+++++++++.+
T Consensus 25 ~~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~----~~~~~~~~~--~~~~~~~~~Dv~d~~~v~~~~~~~~~ 98 (272)
T 4dyv_A 25 KTGKKIAIVTGAGSGVGRAVAVALAGAGYGVALAGRRLD----ALQETAAEI--GDDALCVPTDVTDPDSVRALFTATVE 98 (272)
T ss_dssp ---CCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHH----HHHHHHHHH--TSCCEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHH----HHHHHHHHh--CCCeEEEEecCCCHHHHHHHHHHHHH
Confidence 357899999999999999999999999999999999532 122222221 247899999999999999998754
Q ss_pred ---CccEEEEcccccCh-----hhhccChHHHHHHHHHHHHHHHHHHHhc----CC-CCeEEEEcCccccCCCCCCCCCC
Q 012176 193 ---PFTHVLHLAAQAGV-----RYAMQNPQSYVASNIAGFVNLLEVCKSV----NP-QPSIVWASSSSVYGLNTQVPFSE 259 (469)
Q Consensus 193 ---~~d~Vih~Aa~~~~-----~~~~~~~~~~~~~Nv~~~~~ll~aa~~~----~~-~~~~V~~SS~~vyg~~~~~~~~E 259 (469)
++|+||||||.... ....++++..+++|+.++.++++++... +. .++||++||...+.+.
T Consensus 99 ~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~~~g~IV~isS~~~~~~~------- 171 (272)
T 4dyv_A 99 KFGRVDVLFNNAGTGAPAIPMEDLTFAQWKQVVDTNLTGPFLCTQEAFRVMKAQEPRGGRIINNGSISATSPR------- 171 (272)
T ss_dssp HHSCCCEEEECCCCCCCSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHSSSCCEEEEEECCSSTTSCC-------
T ss_pred HcCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhCCCCCcEEEEECchhhcCCC-------
Confidence 67999999997432 1234555789999999999988876432 21 2489999998766432
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcce
Q 012176 260 SHRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVA 336 (469)
Q Consensus 260 ~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 336 (469)
.+...|+.+|.+.+.+++.++.++ |+++++|+||.|..+.... + ..+.+.... ....
T Consensus 172 -----~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~------~----~~~~~~~~~-----~~~~ 231 (272)
T 4dyv_A 172 -----PYSAPYTATKHAITGLTKSTSLDGRVHDIACGQIDIGNADTPMAQK------M----KAGVPQADL-----SIKV 231 (272)
T ss_dssp -----TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEEECC-----------------------------------
T ss_pred -----CCchHHHHHHHHHHHHHHHHHHHhCccCEEEEEEEECcccChhhhh------h----cccchhhhh-----cccc
Confidence 345789999999999999998774 8999999999998874321 1 011000000 1222
Q ss_pred EecccHHHHHHHHHHHhccCC
Q 012176 337 RDFTYIDDVVKGCVGATGSGG 357 (469)
Q Consensus 337 ~~~v~v~Dva~~~~~~~~~~~ 357 (469)
..+.+++|+|++++.++..+.
T Consensus 232 ~~~~~pedvA~~v~fL~s~~~ 252 (272)
T 4dyv_A 232 EPVMDVAHVASAVVYMASLPL 252 (272)
T ss_dssp ----CHHHHHHHHHHHHHSCT
T ss_pred cCCCCHHHHHHHHHHHhCCCC
Confidence 347899999999999998764
|
| >1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC; 2.40A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.89 E-value=5e-22 Score=191.59 Aligned_cols=232 Identities=15% Similarity=0.067 Sum_probs=162.9
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccC---
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~--- 192 (469)
.++|+|+||||+|+||++++++|+++|++|++++|+.+ ...... . +..++.++.+|++|+++++++++.+
T Consensus 7 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~----~~~~~~-~--~~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 79 (270)
T 1yde_A 7 YAGKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDES----GGRALE-Q--ELPGAVFILCDVTQEDDVKTLVSETIRR 79 (270)
T ss_dssp TTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHH----HHHHHH-H--HCTTEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHH----HHHHHH-H--HhcCCeEEEcCCCCHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999998432 111111 1 1235889999999999999888754
Q ss_pred --CccEEEEcccccCh-----hhhccChHHHHHHHHHHHHHHHHHHHhc---CCCCeEEEEcCccccCCCCCCCCCCCCC
Q 012176 193 --PFTHVLHLAAQAGV-----RYAMQNPQSYVASNIAGFVNLLEVCKSV---NPQPSIVWASSSSVYGLNTQVPFSESHR 262 (469)
Q Consensus 193 --~~d~Vih~Aa~~~~-----~~~~~~~~~~~~~Nv~~~~~ll~aa~~~---~~~~~~V~~SS~~vyg~~~~~~~~E~~~ 262 (469)
++|+||||||.... ....++++..+++|+.++.++++++... +. ++||++||...+.+.
T Consensus 80 ~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~-g~iv~isS~~~~~~~---------- 148 (270)
T 1yde_A 80 FGRLDCVVNNAGHHPPPQRPEETSAQGFRQLLELNLLGTYTLTKLALPYLRKSQ-GNVINISSLVGAIGQ---------- 148 (270)
T ss_dssp HSCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEECCHHHHHCC----------
T ss_pred cCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHCC-CEEEEEcCccccCCC----------
Confidence 67999999997432 1223445688999999999999987531 22 499999997543211
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeecceecCCCCC----CChHHHHHHHHHcCCceEEEeeCCCCcc
Q 012176 263 TDQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRP----DMAYFFFTKDILQGKTIDVYKTQDDREV 335 (469)
Q Consensus 263 ~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~Gp~~~~----~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 335 (469)
.....|+.+|.+.+.+++.++.+ +|+++++||||.|+++.... .......+.......++
T Consensus 149 --~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~p~----------- 215 (270)
T 1yde_A 149 --AQAVPYVATKGAVTAMTKALALDESPYGVRVNCISPGNIWTPLWEELAALMPDPRASIREGMLAQPL----------- 215 (270)
T ss_dssp --TTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCCHHHHHHHTTSSSHHHHHHHHHHTSTT-----------
T ss_pred --CCCcccHHHHHHHHHHHHHHHHHhhhhCcEEEEEEeCccccchhhhhhhcccchHHHHHHHhhcCCC-----------
Confidence 23467999999999999999876 58999999999999873110 00000111111111111
Q ss_pred eEecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCCcccHHHHHH
Q 012176 336 ARDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTSPVPVGRLVS 383 (469)
Q Consensus 336 ~~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~~vt~~el~~ 383 (469)
..+..++|+|++++.++.... -..|+++++.+|..+.+.....
T Consensus 216 -~r~~~p~dva~~v~~L~s~~~----~itG~~i~vdGG~~~~~~~~~~ 258 (270)
T 1yde_A 216 -GRMGQPAEVGAAAVFLASEAN----FCTGIELLVTGGAELGYGCKAS 258 (270)
T ss_dssp -SSCBCHHHHHHHHHHHHHHCT----TCCSCEEEESTTTTSCC-----
T ss_pred -CCCcCHHHHHHHHHHHcccCC----CcCCCEEEECCCeecccCcCcc
Confidence 235789999999998876532 3456899999987666554443
|
| >3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=7.1e-23 Score=194.87 Aligned_cols=224 Identities=14% Similarity=0.135 Sum_probs=164.8
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccC--
Q 012176 115 RPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV-- 192 (469)
Q Consensus 115 ~~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~-- 192 (469)
+.++|+|+||||+|+||++++++|+++|++|++++|+.+ ......... ..++.++.+|++|+++++++++..
T Consensus 3 ~l~gk~vlVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~----~~~~~~~~~--~~~~~~~~~Dv~~~~~v~~~~~~~~~ 76 (247)
T 3rwb_A 3 RLAGKTALVTGAAQGIGKAIAARLAADGATVIVSDINAE----GAKAAAASI--GKKARAIAADISDPGSVKALFAEIQA 76 (247)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCHH----HHHHHHHHH--CTTEEECCCCTTCHHHHHHHHHHHHH
T ss_pred CcCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHH----HHHHHHHHh--CCceEEEEcCCCCHHHHHHHHHHHHH
Confidence 367899999999999999999999999999999998542 122222222 457899999999999999988754
Q ss_pred ---CccEEEEcccccCh----hhhccChHHHHHHHHHHHHHHHHH----HHhcCCCCeEEEEcCccccCCCCCCCCCCCC
Q 012176 193 ---PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEV----CKSVNPQPSIVWASSSSVYGLNTQVPFSESH 261 (469)
Q Consensus 193 ---~~d~Vih~Aa~~~~----~~~~~~~~~~~~~Nv~~~~~ll~a----a~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~ 261 (469)
++|+||||||.... ....++++..+++|+.++.+++++ +++.+..++||++||...+.+.
T Consensus 77 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~--------- 147 (247)
T 3rwb_A 77 LTGGIDILVNNASIVPFVAWDDVDLDHWRKIIDVNLTGTFIVTRAGTDQMRAAGKAGRVISIASNTFFAGT--------- 147 (247)
T ss_dssp HHSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCTHHHHTC---------
T ss_pred HCCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCcEEEEECchhhccCC---------
Confidence 67999999997433 223445667999999999999988 4455533499999998766432
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeecceecCCCCCC--ChHHHHHHHHHcCCceEEEeeCCCCcce
Q 012176 262 RTDQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPD--MAYFFFTKDILQGKTIDVYKTQDDREVA 336 (469)
Q Consensus 262 ~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~Gp~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 336 (469)
.+...|+.+|.+.+.+++.++.+ +|+++++|+||.|.++..... .....+.... .+ .
T Consensus 148 ---~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~---~~------------~ 209 (247)
T 3rwb_A 148 ---PNMAAYVAAKGGVIGFTRALATELGKYNITANAVTPGLIESDGVKASPHNEAFGFVEML---QA------------M 209 (247)
T ss_dssp ---TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHTSGGGGGHHHHHHH---SS------------S
T ss_pred ---CCchhhHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcCcCccccccChhHHHHHHhcc---cc------------c
Confidence 34578999999999999999877 589999999999987632111 0111111110 11 1
Q ss_pred EecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCC
Q 012176 337 RDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTS 374 (469)
Q Consensus 337 ~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~ 374 (469)
..+..++|+|++++.++..... -..|+++++.+|.
T Consensus 210 ~r~~~pedva~~v~~L~s~~~~---~itG~~i~vdGG~ 244 (247)
T 3rwb_A 210 KGKGQPEHIADVVSFLASDDAR---WITGQTLNVDAGM 244 (247)
T ss_dssp CSCBCHHHHHHHHHHHHSGGGT---TCCSCEEEESTTS
T ss_pred CCCcCHHHHHHHHHHHhCcccc---CCCCCEEEECCCc
Confidence 2356789999999998865432 3456999998874
|
| >3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase, oxidoreductase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.3e-22 Score=195.45 Aligned_cols=230 Identities=11% Similarity=-0.034 Sum_probs=165.4
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhh-ccCCeEEEEecCCCHHHHHHhhccC-
Q 012176 115 RPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLL-QKHQVFIVEGDLNDAPLLTKLFDVV- 192 (469)
Q Consensus 115 ~~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~v~~v~~Dl~d~~~l~~~~~~~- 192 (469)
..++|+|+||||+|+||++++++|+++|++|+++++... ........... ...++.++.+|++|.++++++++..
T Consensus 22 ~~~~k~vlITGas~gIG~~~a~~l~~~G~~v~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~ 98 (269)
T 3gk3_A 22 MQAKRVAFVTGGMGGLGAAISRRLHDAGMAVAVSHSERN---DHVSTWLMHERDAGRDFKAYAVDVADFESCERCAEKVL 98 (269)
T ss_dssp --CCCEEEETTTTSHHHHHHHHHHHTTTCEEEEEECSCH---HHHHHHHHHHHTTTCCCEEEECCTTCHHHHHHHHHHHH
T ss_pred hhcCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCch---HHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHH
Confidence 356789999999999999999999999999999985332 11111111111 2347999999999999999888754
Q ss_pred ----CccEEEEcccccChh----hhccChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEEcCccccCCCCCCCCCCC
Q 012176 193 ----PFTHVLHLAAQAGVR----YAMQNPQSYVASNIAGFVNLLEVCKS----VNPQPSIVWASSSSVYGLNTQVPFSES 260 (469)
Q Consensus 193 ----~~d~Vih~Aa~~~~~----~~~~~~~~~~~~Nv~~~~~ll~aa~~----~~~~~~~V~~SS~~vyg~~~~~~~~E~ 260 (469)
++|+||||||..... ...++.+..+++|+.++.++++++.. .+. ++||++||...+...
T Consensus 99 ~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~-g~iv~isS~~~~~~~-------- 169 (269)
T 3gk3_A 99 ADFGKVDVLINNAGITRDATFMKMTKGDWDAVMRTDLDAMFNVTKQFIAGMVERRF-GRIVNIGSVNGSRGA-------- 169 (269)
T ss_dssp HHHSCCSEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-EEEEEECCHHHHHCC--------
T ss_pred HHcCCCCEEEECCCcCCCcchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCC-CEEEEeCChhhccCC--------
Confidence 679999999975432 23445667899999999999988643 443 399999997665322
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceE
Q 012176 261 HRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVAR 337 (469)
Q Consensus 261 ~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 337 (469)
.+...|+.+|.+.+.+++.++.++ |+++++|+||.|..+...... ... ..... .......
T Consensus 170 ----~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~--~~~----~~~~~-------~~~~~~~ 232 (269)
T 3gk3_A 170 ----FGQANYASAKAGIHGFTKTLALETAKRGITVNTVSPGYLATAMVEAVP--QDV----LEAKI-------LPQIPVG 232 (269)
T ss_dssp ----TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTTTC-------------CCS-------GGGCTTS
T ss_pred ----CCcchHHHHHHHHHHHHHHHHHHhhhcCCEEEEEecCcccchhhhhhc--hhH----HHHHh-------hhcCCcC
Confidence 345789999999999999998774 899999999999987544210 011 01000 0012234
Q ss_pred ecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCCcc
Q 012176 338 DFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTSPV 376 (469)
Q Consensus 338 ~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~~v 376 (469)
.+.+++|+|++++.++..... ...|+++++.+|..+
T Consensus 233 ~~~~p~dvA~~v~~L~s~~~~---~itG~~i~vdgG~~~ 268 (269)
T 3gk3_A 233 RLGRPDEVAALIAFLCSDDAG---FVTGADLAINGGMHM 268 (269)
T ss_dssp SCBCHHHHHHHHHHHTSTTCT---TCCSCEEEESTTSCC
T ss_pred CccCHHHHHHHHHHHhCCCcC---CeeCcEEEECCCEeC
Confidence 567899999999998876532 345699999998754
|
| >4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A | Back alignment and structure |
|---|
Probab=99.89 E-value=1.7e-22 Score=194.83 Aligned_cols=227 Identities=11% Similarity=0.010 Sum_probs=164.1
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhh-ccCCeEEEEecCCCHHHHHHhhccC-
Q 012176 115 RPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLL-QKHQVFIVEGDLNDAPLLTKLFDVV- 192 (469)
Q Consensus 115 ~~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~v~~v~~Dl~d~~~l~~~~~~~- 192 (469)
..++|+|+||||+|+||++++++|+++|++|++++|.... .......... ...++.++.+|++|.++++++++..
T Consensus 26 ~l~~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~---~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~ 102 (271)
T 4iin_A 26 QFTGKNVLITGASKGIGAEIAKTLASMGLKVWINYRSNAE---VADALKNELEEKGYKAAVIKFDAASESDFIEAIQTIV 102 (271)
T ss_dssp CCSCCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHH---HHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred ccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCHH---HHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHH
Confidence 3678999999999999999999999999999999995431 1111111111 1347899999999999999888754
Q ss_pred ----CccEEEEcccccChh----hhccChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEEcCccccCCCCCCCCCCC
Q 012176 193 ----PFTHVLHLAAQAGVR----YAMQNPQSYVASNIAGFVNLLEVCKS----VNPQPSIVWASSSSVYGLNTQVPFSES 260 (469)
Q Consensus 193 ----~~d~Vih~Aa~~~~~----~~~~~~~~~~~~Nv~~~~~ll~aa~~----~~~~~~~V~~SS~~vyg~~~~~~~~E~ 260 (469)
++|+||||||..... ...++.+..+++|+.++.++++++.. .+.. +||++||...+.+.
T Consensus 103 ~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g-~iv~isS~~~~~~~-------- 173 (271)
T 4iin_A 103 QSDGGLSYLVNNAGVVRDKLAIKMKTEDFHHVIDNNLTSAFIGCREALKVMSKSRFG-SVVNVASIIGERGN-------- 173 (271)
T ss_dssp HHHSSCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE-EEEEECCHHHHHCC--------
T ss_pred HhcCCCCEEEECCCcCCCcccccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhcCCC-EEEEEechhhcCCC--------
Confidence 679999999975432 23345568899999999998887643 3443 99999997665322
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceE
Q 012176 261 HRTDQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVAR 337 (469)
Q Consensus 261 ~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 337 (469)
.+...|+.+|.+.+.+++.++.+ .|+++++|+||.|..+..... ...+..... ......
T Consensus 174 ----~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~--~~~~~~~~~------------~~~~~~ 235 (271)
T 4iin_A 174 ----MGQTNYSASKGGMIAMSKSFAYEGALRNIRFNSVTPGFIETDMNANL--KDELKADYV------------KNIPLN 235 (271)
T ss_dssp ----TTCHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBCCC--------------CG------------GGCTTC
T ss_pred ----CCchHhHHHHHHHHHHHHHHHHHHHHhCcEEEEEEeCcccCCchhhh--cHHHHHHHH------------hcCCcC
Confidence 34678999999999999999877 489999999999988743321 011111111 122234
Q ss_pred ecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCC
Q 012176 338 DFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTS 374 (469)
Q Consensus 338 ~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~ 374 (469)
.+.+++|+|++++.++..... ...|+++++.+|.
T Consensus 236 ~~~~p~dvA~~i~~l~s~~~~---~itG~~i~vdGG~ 269 (271)
T 4iin_A 236 RLGSAKEVAEAVAFLLSDHSS---YITGETLKVNGGL 269 (271)
T ss_dssp SCBCHHHHHHHHHHHHSGGGT---TCCSCEEEESTTS
T ss_pred CCcCHHHHHHHHHHHhCCCcC---CCcCCEEEeCCCe
Confidence 578899999999999875432 3456999998874
|
| >3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A | Back alignment and structure |
|---|
Probab=99.89 E-value=2.9e-22 Score=191.17 Aligned_cols=223 Identities=17% Similarity=0.127 Sum_probs=162.1
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhh--ccCCeEEEEecC--CCHHHHHHhhc
Q 012176 115 RPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLL--QKHQVFIVEGDL--NDAPLLTKLFD 190 (469)
Q Consensus 115 ~~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~v~~v~~Dl--~d~~~l~~~~~ 190 (469)
..++|+|+||||+|+||++++++|+++|++|++++|+.+ .......... ....+.++.+|+ +|.++++++++
T Consensus 9 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~----~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 84 (252)
T 3f1l_A 9 LLNDRIILVTGASDGIGREAAMTYARYGATVILLGRNEE----KLRQVASHINEETGRQPQWFILDLLTCTSENCQQLAQ 84 (252)
T ss_dssp TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHH----HHHHHHHHHHHHHSCCCEEEECCTTTCCHHHHHHHHH
T ss_pred ccCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHH----HHHHHHHHHHhhcCCCceEEEEecccCCHHHHHHHHH
Confidence 367899999999999999999999999999999999543 1222222111 123788999999 99999888887
Q ss_pred cC-----CccEEEEcccccCh-----hhhccChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEEcCccccCCCCCCC
Q 012176 191 VV-----PFTHVLHLAAQAGV-----RYAMQNPQSYVASNIAGFVNLLEVC----KSVNPQPSIVWASSSSVYGLNTQVP 256 (469)
Q Consensus 191 ~~-----~~d~Vih~Aa~~~~-----~~~~~~~~~~~~~Nv~~~~~ll~aa----~~~~~~~~~V~~SS~~vyg~~~~~~ 256 (469)
.. ++|+||||||.... ....++++..+++|+.++.++++++ ++.+. ++||++||...+.+.
T Consensus 85 ~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~-g~iv~isS~~~~~~~---- 159 (252)
T 3f1l_A 85 RIAVNYPRLDGVLHNAGLLGDVCPMSEQNPQVWQDVMQVNVNATFMLTQALLPLLLKSDA-GSLVFTSSSVGRQGR---- 159 (252)
T ss_dssp HHHHHCSCCSEEEECCCCCCCCSCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTSSS-CEEEEECCGGGTSCC----
T ss_pred HHHHhCCCCCEEEECCccCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHCCC-CEEEEECChhhccCC----
Confidence 54 67999999997422 1233445678999999999999987 34444 499999998765422
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHHHHHHHHhC--CcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCc
Q 012176 257 FSESHRTDQPASLYAATKKAGEEIAHTYNHIYG--LALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDRE 334 (469)
Q Consensus 257 ~~E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~g--i~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 334 (469)
.+...|+.+|.+.+.+++.++.+++ ++++.|+||.|..+ +........
T Consensus 160 --------~~~~~Y~asK~a~~~l~~~la~e~~~~irvn~v~PG~v~t~----------~~~~~~~~~------------ 209 (252)
T 3f1l_A 160 --------ANWGAYAASKFATEGMMQVLADEYQQRLRVNCINPGGTRTA----------MRASAFPTE------------ 209 (252)
T ss_dssp --------TTCHHHHHHHHHHHHHHHHHHHHTTTTCEEEEEECCSBSSH----------HHHHHCTTC------------
T ss_pred --------CCCchhHHHHHHHHHHHHHHHHHhcCCcEEEEEecCcccCc----------hhhhhCCcc------------
Confidence 3457899999999999999998864 99999999998764 111111111
Q ss_pred ceEecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCCcccHH
Q 012176 335 VARDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTSPVPVG 379 (469)
Q Consensus 335 ~~~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~~vt~~ 379 (469)
....+..++|+|.+++.++..... ...|+++++.+|...++.
T Consensus 210 ~~~~~~~p~dva~~~~~L~s~~~~---~itG~~i~vdgG~~~~~~ 251 (252)
T 3f1l_A 210 DPQKLKTPADIMPLYLWLMGDDSR---RKTGMTFDAQPGRKPGIS 251 (252)
T ss_dssp CGGGSBCTGGGHHHHHHHHSGGGT---TCCSCEEESSCC------
T ss_pred chhccCCHHHHHHHHHHHcCcccc---CCCCCEEEeCCCcCCCCC
Confidence 112367889999999998865432 345699999998876654
|
| >3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.10A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.89 E-value=2.5e-22 Score=198.74 Aligned_cols=177 Identities=17% Similarity=0.127 Sum_probs=133.9
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChh-HHHHHHHhh-ccCCeEEEEecCCCHHHHHHhhccC-
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPS-LKRARQKLL-QKHQVFIVEGDLNDAPLLTKLFDVV- 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~-~~~~~~~~~-~~~~v~~v~~Dl~d~~~l~~~~~~~- 192 (469)
+++|+||||||+|+||++++++|+++|++|++++|........ ......... ...++.++.+|++|+++++++++..
T Consensus 3 m~~k~vlVTGas~GIG~aia~~L~~~G~~V~~~~r~~~~r~~~~~~~l~~~~~~~~~~~~~~~~Dvtd~~~v~~~~~~~~ 82 (324)
T 3u9l_A 3 MSKKIILITGASSGFGRLTAEALAGAGHRVYASMRDIVGRNASNVEAIAGFARDNDVDLRTLELDVQSQVSVDRAIDQII 82 (324)
T ss_dssp --CCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCTTTTTHHHHHHHHHHHHHHTCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEecCcccccCHHHHHHHHHHHHhcCCcEEEEEeecCCHHHHHHHHHHHH
Confidence 4578999999999999999999999999999999864332222 222111111 2357999999999999999998854
Q ss_pred ----CccEEEEcccccCh----hhhccChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEEcCccccCCCCCCCCCCC
Q 012176 193 ----PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVC----KSVNPQPSIVWASSSSVYGLNTQVPFSES 260 (469)
Q Consensus 193 ----~~d~Vih~Aa~~~~----~~~~~~~~~~~~~Nv~~~~~ll~aa----~~~~~~~~~V~~SS~~vyg~~~~~~~~E~ 260 (469)
++|+||||||.... ....++.+..+++|+.|+.++++++ ++.+.. +||++||.+.+....
T Consensus 83 ~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~a~lp~m~~~~~g-~iV~isS~~~~~~~~------- 154 (324)
T 3u9l_A 83 GEDGRIDVLIHNAGHMVFGPAEAFTPEQFAELYDINVLSTQRVNRAALPHMRRQKHG-LLIWISSSSSAGGTP------- 154 (324)
T ss_dssp HHHSCCSEEEECCCCCBCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE-EEEEECCGGGTSCCC-------
T ss_pred HHcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCC-EEEEEecchhccCCC-------
Confidence 67999999996432 2234455678999999999999998 555554 999999987764221
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeecceecCC
Q 012176 261 HRTDQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPW 304 (469)
Q Consensus 261 ~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~Gp~ 304 (469)
.....|+.+|.+.|.+++.++.+ +|+++++|+||.|.++.
T Consensus 155 ----~~~~~Y~asKaa~~~~~~~la~el~~~gI~v~~v~PG~v~t~~ 197 (324)
T 3u9l_A 155 ----PYLAPYFAAKAAMDAIAVQYARELSRWGIETSIIVPGAFTSGT 197 (324)
T ss_dssp ----SSCHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECCC----
T ss_pred ----CcchhHHHHHHHHHHHHHHHHHHhhhhCcEEEEEECCccccCc
Confidence 23467999999999999999887 48999999999998653
|
| >2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA, nation project on protein structural and functional analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB: 1x1e_A* 2ekq_A | Back alignment and structure |
|---|
Probab=99.89 E-value=2.7e-22 Score=189.78 Aligned_cols=219 Identities=14% Similarity=0.072 Sum_probs=159.9
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccC-----
Q 012176 118 GMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV----- 192 (469)
Q Consensus 118 ~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~----- 192 (469)
+|+|+||||+|+||++++++|+++|++|++++|+.+. .... + ++..+.+|++| ++++++++..
T Consensus 2 ~k~vlVTGas~giG~~~a~~l~~~G~~V~~~~r~~~~-------~~~~-~---~~~~~~~D~~~-~~~~~~~~~~~~~~g 69 (239)
T 2ekp_A 2 ERKALVTGGSRGIGRAIAEALVARGYRVAIASRNPEE-------AAQS-L---GAVPLPTDLEK-DDPKGLVKRALEALG 69 (239)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCHH-------HHHH-H---TCEEEECCTTT-SCHHHHHHHHHHHHT
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHH-------HHHh-h---CcEEEecCCch-HHHHHHHHHHHHHcC
Confidence 5789999999999999999999999999999996431 1111 1 38889999999 8777766532
Q ss_pred CccEEEEcccccCh----hhhccChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEEcCccccCCCCCCCCCCCCCCC
Q 012176 193 PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCK----SVNPQPSIVWASSSSVYGLNTQVPFSESHRTD 264 (469)
Q Consensus 193 ~~d~Vih~Aa~~~~----~~~~~~~~~~~~~Nv~~~~~ll~aa~----~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~ 264 (469)
++|+||||||.... ....++++..+++|+.++.++++++. +.+.. +||++||...+.... .
T Consensus 70 ~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~g-~iv~isS~~~~~~~~----------~ 138 (239)
T 2ekp_A 70 GLHVLVHAAAVNVRKPALELSYEEWRRVLYLHLDVAFLLAQAAAPHMAEAGWG-RVLFIGSVTTFTAGG----------P 138 (239)
T ss_dssp SCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE-EEEEECCGGGTSCCT----------T
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCc-EEEEECchhhccCCC----------C
Confidence 57999999997432 12344567899999999999998874 34544 999999988775331 0
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceEeccc
Q 012176 265 QPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTY 341 (469)
Q Consensus 265 ~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~ 341 (469)
.+...|+.+|.+.|.+++.++.++ |+++++||||.|.++........+.+...+....++ ..+..
T Consensus 139 ~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~p~------------~~~~~ 206 (239)
T 2ekp_A 139 VPIPAYTTAKTALLGLTRALAKEWARLGIRVNLLCPGYVETEFTLPLRQNPELYEPITARIPM------------GRWAR 206 (239)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSGGGHHHHTCHHHHHHHHTTCTT------------SSCBC
T ss_pred CCCccHHHHHHHHHHHHHHHHHHhhhcCcEEEEEEeCCccCchhhccccCHHHHHHHHhcCCC------------CCCcC
Confidence 345789999999999999998775 899999999999987432100001222333322221 23678
Q ss_pred HHHHHHHHHHHhccCCCCCCCCCceEEEeCCCC
Q 012176 342 IDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTS 374 (469)
Q Consensus 342 v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~ 374 (469)
++|+|++++.++..... ...|+++++.++.
T Consensus 207 ~~dvA~~~~~l~s~~~~---~~tG~~~~vdgG~ 236 (239)
T 2ekp_A 207 PEEIARVAAVLCGDEAE---YLTGQAVAVDGGF 236 (239)
T ss_dssp HHHHHHHHHHHTSGGGT---TCCSCEEEESTTT
T ss_pred HHHHHHHHHHHcCchhc---CCCCCEEEECCCc
Confidence 99999999998865321 2456899998874
|
| >2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase; 1.99A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=99.89 E-value=5.9e-22 Score=189.23 Aligned_cols=216 Identities=14% Similarity=0.075 Sum_probs=159.7
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccC---
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~--- 192 (469)
.++|+|+||||+|+||++++++|+++|++|++++|+.+... .+.++.+|++|+++++++++.+
T Consensus 19 l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~--------------~~~~~~~Dl~d~~~v~~~~~~~~~~ 84 (253)
T 2nm0_A 19 HMSRSVLVTGGNRGIGLAIARAFADAGDKVAITYRSGEPPE--------------GFLAVKCDITDTEQVEQAYKEIEET 84 (253)
T ss_dssp -CCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSCCCT--------------TSEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHhhc--------------cceEEEecCCCHHHHHHHHHHHHHH
Confidence 56789999999999999999999999999999999654221 3788999999999998888764
Q ss_pred --CccEEEEcccccCh----hhhccChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEEcCccccCCCCCCCCCCCCC
Q 012176 193 --PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCKS----VNPQPSIVWASSSSVYGLNTQVPFSESHR 262 (469)
Q Consensus 193 --~~d~Vih~Aa~~~~----~~~~~~~~~~~~~Nv~~~~~ll~aa~~----~~~~~~~V~~SS~~vyg~~~~~~~~E~~~ 262 (469)
++|+||||||.... ....++++..+++|+.++.++++++.. .+.. +||++||...+.+.
T Consensus 85 ~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g-~iv~isS~~~~~~~---------- 153 (253)
T 2nm0_A 85 HGPVEVLIANAGVTKDQLLMRMSEEDFTSVVETNLTGTFRVVKRANRAMLRAKKG-RVVLISSVVGLLGS---------- 153 (253)
T ss_dssp TCSCSEEEEECSCCTTTC---CCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHTCE-EEEEECCCCCCCCH----------
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-EEEEECchhhCCCC----------
Confidence 57999999997432 234567789999999999999987653 3443 99999997665321
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceEec
Q 012176 263 TDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDF 339 (469)
Q Consensus 263 ~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 339 (469)
.+...|+.+|.+.+.+++.++.++ |+++++|+||.|.++.... ........+....+ ...+
T Consensus 154 --~~~~~Y~asK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~--~~~~~~~~~~~~~p------------~~~~ 217 (253)
T 2nm0_A 154 --AGQANYAASKAGLVGFARSLARELGSRNITFNVVAPGFVDTDMTKV--LTDEQRANIVSQVP------------LGRY 217 (253)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHCSSSEEEEEEEECSBCC-----------CHHHHHTTCT------------TCSC
T ss_pred --CCcHHHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeCcCcCcchhh--cCHHHHHHHHhcCC------------CCCC
Confidence 234679999999999999998774 7999999999998764321 00111112222211 1247
Q ss_pred ccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCCc
Q 012176 340 TYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTSP 375 (469)
Q Consensus 340 v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~~ 375 (469)
++++|+|++++.++..+.. ...|+++++.++..
T Consensus 218 ~~p~dvA~~i~~l~s~~~~---~~tG~~i~vdGG~~ 250 (253)
T 2nm0_A 218 ARPEEIAATVRFLASDDAS---YITGAVIPVDGGLG 250 (253)
T ss_dssp BCHHHHHHHHHHHHSGGGT---TCCSCEEEESTTTT
T ss_pred cCHHHHHHHHHHHhCcccc---CCcCcEEEECCccc
Confidence 8899999999998875422 24568999988754
|
| >1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.40A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.89 E-value=1.7e-21 Score=185.02 Aligned_cols=221 Identities=16% Similarity=0.103 Sum_probs=162.4
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccC---
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~--- 192 (469)
.++|+++||||+|+||++++++|+++|++|++++|+.+ ...... ...++.++.+|++|+++++++++..
T Consensus 3 l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~----~~~~~~----~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 74 (245)
T 1uls_A 3 LKDKAVLITGAAHGIGRATLELFAKEGARLVACDIEEG----PLREAA----EAVGAHPVVMDVADPASVERGFAEALAH 74 (245)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHH----HHHHHH----HTTTCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHH----HHHHHH----HHcCCEEEEecCCCHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999998432 111111 1114889999999999999888763
Q ss_pred --CccEEEEcccccChh----hhccChHHHHHHHHHHHHHHHHHHHhc----CCCCeEEEEcCccccCCCCCCCCCCCCC
Q 012176 193 --PFTHVLHLAAQAGVR----YAMQNPQSYVASNIAGFVNLLEVCKSV----NPQPSIVWASSSSVYGLNTQVPFSESHR 262 (469)
Q Consensus 193 --~~d~Vih~Aa~~~~~----~~~~~~~~~~~~Nv~~~~~ll~aa~~~----~~~~~~V~~SS~~vyg~~~~~~~~E~~~ 262 (469)
++|+||||||..... ...++.+..+++|+.++.++++++... +. ++||++||...++.
T Consensus 75 ~g~id~lvn~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~-g~iv~isS~~~~~~----------- 142 (245)
T 1uls_A 75 LGRLDGVVHYAGITRDNFHWKMPLEDWELVLRVNLTGSFLVAKAASEAMREKNP-GSIVLTASRVYLGN----------- 142 (245)
T ss_dssp HSSCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCC-EEEEEECCGGGGCC-----------
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCC-CEEEEEccchhcCC-----------
Confidence 579999999974321 223455678999999999999887543 33 39999999874431
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceEec
Q 012176 263 TDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDF 339 (469)
Q Consensus 263 ~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 339 (469)
.....|+.+|.+.+.+++.++.++ |+++++|+||.|.++...... ..+...+....++ ..+
T Consensus 143 --~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~--~~~~~~~~~~~p~------------~~~ 206 (245)
T 1uls_A 143 --LGQANYAASMAGVVGLTRTLALELGRWGIRVNTLAPGFIETRMTAKVP--EKVREKAIAATPL------------GRA 206 (245)
T ss_dssp --TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTTSSSC--HHHHHHHHHTCTT------------CSC
T ss_pred --CCchhHHHHHHHHHHHHHHHHHHHhHhCeEEEEEEeCcCcCcchhhcC--HHHHHHHHhhCCC------------CCC
Confidence 234689999999999999988764 899999999999887543211 1222222222221 126
Q ss_pred ccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCCc
Q 012176 340 TYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTSP 375 (469)
Q Consensus 340 v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~~ 375 (469)
.+++|+|++++.++..... ...|+++++.++..
T Consensus 207 ~~~~dvA~~v~~l~s~~~~---~~tG~~~~vdgG~~ 239 (245)
T 1uls_A 207 GKPLEVAYAALFLLSDESS---FITGQVLFVDGGRT 239 (245)
T ss_dssp BCHHHHHHHHHHHHSGGGT---TCCSCEEEESTTTT
T ss_pred cCHHHHHHHHHHHhCchhc---CCcCCEEEECCCcc
Confidence 7899999999998865421 24568999988753
|
| >1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=6.2e-22 Score=192.17 Aligned_cols=229 Identities=12% Similarity=0.036 Sum_probs=164.4
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhh-ccCCeEEEEecCCCHHHHHHhhccC--
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLL-QKHQVFIVEGDLNDAPLLTKLFDVV-- 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~v~~v~~Dl~d~~~l~~~~~~~-- 192 (469)
.++|+||||||+|+||++++++|+++|++|++++|+... .......... ...++.++.+|++|.++++++++..
T Consensus 27 ~~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~---~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 103 (283)
T 1g0o_A 27 LEGKVALVTGAGRGIGREMAMELGRRGCKVIVNYANSTE---SAEEVVAAIKKNGSDAACVKANVGVVEDIVRMFEEAVK 103 (283)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHH---HHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchH---HHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHHH
Confidence 567999999999999999999999999999999985421 1111111111 1347889999999999998888653
Q ss_pred ---CccEEEEcccccChh----hhccChHHHHHHHHHHHHHHHHHHHhc--CCCCeEEEEcCccccCCCCCCCCCCCCCC
Q 012176 193 ---PFTHVLHLAAQAGVR----YAMQNPQSYVASNIAGFVNLLEVCKSV--NPQPSIVWASSSSVYGLNTQVPFSESHRT 263 (469)
Q Consensus 193 ---~~d~Vih~Aa~~~~~----~~~~~~~~~~~~Nv~~~~~ll~aa~~~--~~~~~~V~~SS~~vyg~~~~~~~~E~~~~ 263 (469)
++|+||||||..... ...++++..+++|+.++.++++++... +. ++||++||...+....
T Consensus 104 ~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~-g~iv~isS~~~~~~~~---------- 172 (283)
T 1g0o_A 104 IFGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIG-GRLILMGSITGQAKAV---------- 172 (283)
T ss_dssp HHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTT-CEEEEECCGGGTCSSC----------
T ss_pred HcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcC-CeEEEEechhhccCCC----------
Confidence 679999999975321 234556788999999999999998775 33 4999999977653210
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCCC-------CC--hHHHHHHHHHc--CCceEEEee
Q 012176 264 DQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRP-------DM--AYFFFTKDILQ--GKTIDVYKT 329 (469)
Q Consensus 264 ~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~~-------~~--~~~~~~~~~~~--g~~~~~~~~ 329 (469)
.+...|+.+|.+.+.+++.++.++ |+++++|+||.|.++.... .. ........+.. ..+
T Consensus 173 -~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p------ 245 (283)
T 1g0o_A 173 -PKHAVYSGSKGAIETFARCMAIDMADKKITVNVVAPGGIKTDMYHAVCREYIPNGENLSNEEVDEYAAVQWSP------ 245 (283)
T ss_dssp -SSCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBSSHHHHHHGGGGSTTCTTCCHHHHHHHHHHHSCT------
T ss_pred -CCCcchHHHHHHHHHHHHHHHHHhcccCeEEEEEecCcccchhhhhhhhhccccccccCHHHHHHHHhhcCCC------
Confidence 135789999999999999998764 8999999999998862110 00 00111122221 111
Q ss_pred CCCCcceEecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCC
Q 012176 330 QDDREVARDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTS 374 (469)
Q Consensus 330 ~~~~~~~~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~ 374 (469)
...+.+++|+|++++.++..... -..|+++++.+|.
T Consensus 246 ------~~r~~~p~dvA~~v~~l~s~~~~---~itG~~i~vdgG~ 281 (283)
T 1g0o_A 246 ------LRRVGLPIDIARVVCFLASNDGG---WVTGKVIGIDGGA 281 (283)
T ss_dssp ------TCSCBCHHHHHHHHHHHHSGGGT---TCCSCEEEESTTC
T ss_pred ------CCCCcCHHHHHHHHHHHhCcccc---CcCCCEEEeCCCc
Confidence 12367899999999999865422 2456899998874
|
| >3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.89 E-value=9.4e-22 Score=189.75 Aligned_cols=227 Identities=13% Similarity=0.049 Sum_probs=165.7
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhh-ccCCeEEEEecCCCHHHHHHhhccC--
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLL-QKHQVFIVEGDLNDAPLLTKLFDVV-- 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~v~~v~~Dl~d~~~l~~~~~~~-- 192 (469)
.++|+||||||+|+||++++++|+++|++|+++++... ........... ...++.++.+|++|+++++++++.+
T Consensus 29 l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~ 105 (271)
T 3v2g_A 29 LAGKTAFVTGGSRGIGAAIAKRLALEGAAVALTYVNAA---ERAQAVVSEIEQAGGRAVAIRADNRDAEAIEQAIRETVE 105 (271)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCH---HHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCH---HHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999977432 11111112211 1347899999999999999888754
Q ss_pred ---CccEEEEcccccChh----hhccChHHHHHHHHHHHHHHHHHHHhc-CCCCeEEEEcCccccCCCCCCCCCCCCCCC
Q 012176 193 ---PFTHVLHLAAQAGVR----YAMQNPQSYVASNIAGFVNLLEVCKSV-NPQPSIVWASSSSVYGLNTQVPFSESHRTD 264 (469)
Q Consensus 193 ---~~d~Vih~Aa~~~~~----~~~~~~~~~~~~Nv~~~~~ll~aa~~~-~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~ 264 (469)
++|+||||||..... ...++++..+++|+.++..+++++... ...++||++||....... .
T Consensus 106 ~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~g~iv~isS~~~~~~~-----------~ 174 (271)
T 3v2g_A 106 ALGGLDILVNSAGIWHSAPLEETTVADFDEVMAVNFRAPFVAIRSASRHLGDGGRIITIGSNLAELVP-----------W 174 (271)
T ss_dssp HHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECCGGGTCCC-----------S
T ss_pred HcCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEeChhhccCC-----------C
Confidence 679999999974322 234556788999999999999998764 223499999995443110 1
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceEeccc
Q 012176 265 QPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTY 341 (469)
Q Consensus 265 ~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~ 341 (469)
.+...|+.+|.+.+.+++.++.++ |+++++|+||.|.++....... .........++ ..+..
T Consensus 175 ~~~~~Y~asKaa~~~l~~~la~e~~~~gIrvn~v~PG~v~T~~~~~~~~---~~~~~~~~~~~------------~r~~~ 239 (271)
T 3v2g_A 175 PGISLYSASKAALAGLTKGLARDLGPRGITVNIVHPGSTDTDMNPADGD---HAEAQRERIAT------------GSYGE 239 (271)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSSSSCSSCS---SHHHHHHTCTT------------SSCBC
T ss_pred CCchHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEecCCCcCCcccccch---hHHHHHhcCCC------------CCCCC
Confidence 345789999999999999998775 8999999999999986543221 11222222222 23567
Q ss_pred HHHHHHHHHHHhccCCCCCCCCCceEEEeCCCC
Q 012176 342 IDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTS 374 (469)
Q Consensus 342 v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~ 374 (469)
++|+|++++.++..... -..|+++++.+|.
T Consensus 240 pedvA~~v~fL~s~~~~---~itG~~i~vdGG~ 269 (271)
T 3v2g_A 240 PQDIAGLVAWLAGPQGK---FVTGASLTIDGGA 269 (271)
T ss_dssp HHHHHHHHHHHHSGGGT---TCCSCEEEESTTT
T ss_pred HHHHHHHHHHHhCcccC---CccCCEEEeCcCc
Confidence 99999999988764422 3456999998874
|
| >3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=1.9e-22 Score=193.96 Aligned_cols=231 Identities=12% Similarity=0.069 Sum_probs=165.6
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhh---ccCCeEEEEecCCCHHHHHHhhccC
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLL---QKHQVFIVEGDLNDAPLLTKLFDVV 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~---~~~~v~~v~~Dl~d~~~l~~~~~~~ 192 (469)
.++|+||||||+|+||++++++|+++|++|++++|+.+ .......... ...++.++.+|++|+++++++++.+
T Consensus 6 l~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~----~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~ 81 (265)
T 3lf2_A 6 LSEAVAVVTGGSSGIGLATVELLLEAGAAVAFCARDGE----RLRAAESALRQRFPGARLFASVCDVLDALQVRAFAEAC 81 (265)
T ss_dssp CTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHH----HHHHHHHHHHHHSTTCCEEEEECCTTCHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHH----HHHHHHHHHHHhcCCceEEEEeCCCCCHHHHHHHHHHH
Confidence 67899999999999999999999999999999999543 1222222221 1235899999999999999888754
Q ss_pred -----CccEEEEcccccCh----hhhccChHHHHHHHHHHHHHHHHHHHhc---CCCCeEEEEcCccccCCCCCCCCCCC
Q 012176 193 -----PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCKSV---NPQPSIVWASSSSVYGLNTQVPFSES 260 (469)
Q Consensus 193 -----~~d~Vih~Aa~~~~----~~~~~~~~~~~~~Nv~~~~~ll~aa~~~---~~~~~~V~~SS~~vyg~~~~~~~~E~ 260 (469)
++|+||||||.... ....++++..+++|+.++.++++++... ...++||++||...+.+.
T Consensus 82 ~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~-------- 153 (265)
T 3lf2_A 82 ERTLGCASILVNNAGQGRVSTFAETTDEAWSEELQLKFFSVIHPVRAFLPQLESRADAAIVCVNSLLASQPE-------- 153 (265)
T ss_dssp HHHHCSCSEEEECCCCCCCBCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTEEEEEEEEGGGTSCC--------
T ss_pred HHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEEEEECCcccCCCC--------
Confidence 68999999997433 2334556788999999999999987542 112489999998766432
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCCC--------CChHHHHHHHHHcCCceEEEee
Q 012176 261 HRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRP--------DMAYFFFTKDILQGKTIDVYKT 329 (469)
Q Consensus 261 ~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~~--------~~~~~~~~~~~~~g~~~~~~~~ 329 (469)
.....|+.+|.+.+.+++.++.++ |+++++|+||.|.+|.... ......+...+.....+
T Consensus 154 ----~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 224 (265)
T 3lf2_A 154 ----PHMVATSAARAGVKNLVRSMAFEFAPKGVRVNGILIGLVESGQWRRRFEAREERELDWAQWTAQLARNKQI----- 224 (265)
T ss_dssp ----TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHHHHTC------CHHHHHHHHHHHTTC-----
T ss_pred ----CCchhhHHHHHHHHHHHHHHHHHhcccCeEEEEEEeCcCcCchhhhhhhhhhhhccCHHHHHHHHhhccCC-----
Confidence 345789999999999999998775 8999999999998862110 00111122211111111
Q ss_pred CCCCcceEecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCCc
Q 012176 330 QDDREVARDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTSP 375 (469)
Q Consensus 330 ~~~~~~~~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~~ 375 (469)
....+..++|+|++++.++..... -..|+++++.+|..
T Consensus 225 -----p~~r~~~pedvA~~v~fL~s~~~~---~itG~~i~vdGG~~ 262 (265)
T 3lf2_A 225 -----PLGRLGKPIEAARAILFLASPLSA---YTTGSHIDVSGGLS 262 (265)
T ss_dssp -----TTCSCBCHHHHHHHHHHHHSGGGT---TCCSEEEEESSSCC
T ss_pred -----CcCCCcCHHHHHHHHHHHhCchhc---CcCCCEEEECCCCc
Confidence 113467899999999998865422 34569999988753
|
| >3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=99.89 E-value=3.2e-22 Score=192.58 Aligned_cols=233 Identities=11% Similarity=0.055 Sum_probs=166.3
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhc---cCCeEEEEecCCCHHHHHHhhccC
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQ---KHQVFIVEGDLNDAPLLTKLFDVV 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~---~~~v~~v~~Dl~d~~~l~~~~~~~ 192 (469)
.++|+||||||+|+||++++++|+++|++|++++|+.+. .......... ...+..+.+|++|++.++++++..
T Consensus 8 l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~----~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 83 (267)
T 3t4x_A 8 LKGKTALVTGSTAGIGKAIATSLVAEGANVLINGRREEN----VNETIKEIRAQYPDAILQPVVADLGTEQGCQDVIEKY 83 (267)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHH----HHHHHHHHHHHCTTCEEEEEECCTTSHHHHHHHHHHC
T ss_pred cCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHH----HHHHHHHHHhhCCCceEEEEecCCCCHHHHHHHHHhc
Confidence 578999999999999999999999999999999995432 1222222111 346788999999999999998865
Q ss_pred -CccEEEEcccccChh----hhccChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEEcCccccCCCCCCCCCCCCCC
Q 012176 193 -PFTHVLHLAAQAGVR----YAMQNPQSYVASNIAGFVNLLEVCK----SVNPQPSIVWASSSSVYGLNTQVPFSESHRT 263 (469)
Q Consensus 193 -~~d~Vih~Aa~~~~~----~~~~~~~~~~~~Nv~~~~~ll~aa~----~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~ 263 (469)
++|+||||||..... ...++.+..+++|+.++..+++++. +.+. ++||++||...+.+.
T Consensus 84 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~-g~iv~isS~~~~~~~----------- 151 (267)
T 3t4x_A 84 PKVDILINNLGIFEPVEYFDIPDEDWFKLFEVNIMSGVRLTRSYLKKMIERKE-GRVIFIASEAAIMPS----------- 151 (267)
T ss_dssp CCCSEEEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTE-EEEEEECCGGGTSCC-----------
T ss_pred CCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCC-CEEEEEcchhhccCC-----------
Confidence 679999999975432 2234456789999999888877654 3443 399999998776432
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCC---------CCChHHHHHHHHHcC-CceEEEeeC
Q 012176 264 DQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGR---------PDMAYFFFTKDILQG-KTIDVYKTQ 330 (469)
Q Consensus 264 ~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~---------~~~~~~~~~~~~~~g-~~~~~~~~~ 330 (469)
.+...|+.+|.+.+.+++.++.++ |+++++|+||.|.++... .........+..... .+
T Consensus 152 -~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 223 (267)
T 3t4x_A 152 -QEMAHYSATKTMQLSLSRSLAELTTGTNVTVNTIMPGSTLTEGVETMLNSLYPNEQLTIEEAEKRFMKENRP------- 223 (267)
T ss_dssp -TTCHHHHHHHHHHHHHHHHHHHHTTTSEEEEEEEEECCBCCHHHHHHHHHSSTTSCCCHHHHHHHHHHHHCT-------
T ss_pred -CcchHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCeecCccHHHHHhhcCcccCCCHHHHHHHHhhccCC-------
Confidence 346789999999999999999875 699999999999876211 000011111111110 00
Q ss_pred CCCcceEecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCCccc
Q 012176 331 DDREVARDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTSPVP 377 (469)
Q Consensus 331 ~~~~~~~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~~vt 377 (469)
......+.+++|+|++++.++..... -..|+++++.+|...+
T Consensus 224 --~~~~~r~~~pedvA~~v~fL~s~~~~---~itG~~i~vdGG~~~s 265 (267)
T 3t4x_A 224 --TSIIQRLIRPEEIAHLVTFLSSPLSS---AINGSALRIDGGLVRS 265 (267)
T ss_dssp --TCSSCSCBCTHHHHHHHHHHHSGGGT---TCCSCEEEESTTCSCS
T ss_pred --cccccCccCHHHHHHHHHHHcCcccc---CccCCeEEECCCcccc
Confidence 11234678899999999998865422 3456999999987554
|
| >1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.89 E-value=7e-22 Score=188.90 Aligned_cols=224 Identities=17% Similarity=0.087 Sum_probs=159.9
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhc-cCCeEEEEecCCCHHHHHHhhccC----
Q 012176 118 GMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQ-KHQVFIVEGDLNDAPLLTKLFDVV---- 192 (469)
Q Consensus 118 ~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~v~~v~~Dl~d~~~l~~~~~~~---- 192 (469)
+|+|+||||+|+||++++++|+++|++|++++|+.+ ........... ..++.++.+|++|+++++++++.+
T Consensus 2 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~----~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~ 77 (256)
T 1geg_A 2 KKVALVTGAGQGIGKAIALRLVKDGFAVAIADYNDA----TAKAVASEINQAGGHAVAVKVDVSDRDQVFAAVEQARKTL 77 (256)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH----HHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHT
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHH----HHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHh
Confidence 478999999999999999999999999999999542 11221112111 346889999999999999888743
Q ss_pred -CccEEEEcccccChh----hhccChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEEcCccccCCCCCCCCCCCCCC
Q 012176 193 -PFTHVLHLAAQAGVR----YAMQNPQSYVASNIAGFVNLLEVCKS----VNPQPSIVWASSSSVYGLNTQVPFSESHRT 263 (469)
Q Consensus 193 -~~d~Vih~Aa~~~~~----~~~~~~~~~~~~Nv~~~~~ll~aa~~----~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~ 263 (469)
++|+||||||..... ...++++..+++|+.++.++++++.. .+..++||++||...+.+.
T Consensus 78 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~----------- 146 (256)
T 1geg_A 78 GGFDVIVNNAGVAPSTPIESITPEIVDKVYNINVKGVIWGIQAAVEAFKKEGHGGKIINACSQAGHVGN----------- 146 (256)
T ss_dssp TCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTSCC-----------
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCEEEEECchhhcCCC-----------
Confidence 579999999964321 23345567899999999998887654 3412499999997665321
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeecceecCCCCCCChH-----------HHHHHHHHcCCceEEEee
Q 012176 264 DQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPDMAY-----------FFFTKDILQGKTIDVYKT 329 (469)
Q Consensus 264 ~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~Gp~~~~~~~~-----------~~~~~~~~~g~~~~~~~~ 329 (469)
.+...|+.+|.+.+.+++.++.+ +|+++++|+||.|.++.... .. ......+....
T Consensus 147 -~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~------- 216 (256)
T 1geg_A 147 -PELAVYSSSKFAVRGLTQTAARDLAPLGITVNGYCPGIVKTPMWAE--IDRQVSEAAGKPLGYGTAEFAKRI------- 216 (256)
T ss_dssp -TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBSSHHHHH--HHHHHHHHHTCCTTHHHHHHHTTC-------
T ss_pred -CCchhHHHHHHHHHHHHHHHHHHHHHcCeEEEEEEECCCccchhhh--hhhhccccccCChHHHHHHHHhcC-------
Confidence 23468999999999999999876 48999999999998863110 00 00111111111
Q ss_pred CCCCcceEecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCC
Q 012176 330 QDDREVARDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTS 374 (469)
Q Consensus 330 ~~~~~~~~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~ 374 (469)
....+.+++|+|++++.++..... ...|+++++.+|.
T Consensus 217 -----p~~r~~~p~dvA~~v~~l~s~~~~---~~tG~~i~vdGG~ 253 (256)
T 1geg_A 217 -----TLGRLSEPEDVAACVSYLASPDSD---YMTGQSLLIDGGM 253 (256)
T ss_dssp -----TTCSCBCHHHHHHHHHHHHSGGGT---TCCSCEEEESSSS
T ss_pred -----CCCCCcCHHHHHHHHHHHhCcccc---CCCCCEEEeCCCc
Confidence 112478999999999998865421 2356899998875
|
| >3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold, oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=99.89 E-value=5.6e-22 Score=190.82 Aligned_cols=208 Identities=16% Similarity=0.078 Sum_probs=154.7
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccC---
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~--- 192 (469)
..+|+||||||+|+||++++++|+++|++|++++|+.+ ........++.++.+|++|.++++++++..
T Consensus 14 ~~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~---------~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 84 (266)
T 3p19_A 14 SMKKLVVITGASSGIGEAIARRFSEEGHPLLLLARRVE---------RLKALNLPNTLCAQVDVTDKYTFDTAITRAEKI 84 (266)
T ss_dssp -CCCEEEEESTTSHHHHHHHHHHHHTTCCEEEEESCHH---------HHHTTCCTTEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHH---------HHHHhhcCCceEEEecCCCHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999998421 222233447899999999999999888754
Q ss_pred --CccEEEEcccccChh----hhccChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEEcCccccCCCCCCCCCCCCC
Q 012176 193 --PFTHVLHLAAQAGVR----YAMQNPQSYVASNIAGFVNLLEVCK----SVNPQPSIVWASSSSVYGLNTQVPFSESHR 262 (469)
Q Consensus 193 --~~d~Vih~Aa~~~~~----~~~~~~~~~~~~Nv~~~~~ll~aa~----~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~ 262 (469)
++|+||||||..... ...++.+..+++|+.++.++++++. +.+.. +||++||...+.+.
T Consensus 85 ~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g-~IV~isS~~~~~~~---------- 153 (266)
T 3p19_A 85 YGPADAIVNNAGMMLLGQIDTQEANEWQRMFDVNVLGLLNGMQAVLAPMKARNCG-TIINISSIAGKKTF---------- 153 (266)
T ss_dssp HCSEEEEEECCCCCCCCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCC-EEEEECCGGGTSCC----------
T ss_pred CCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCc-EEEEEcChhhCCCC----------
Confidence 679999999975332 2334556789999999999877753 45544 99999998776432
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceEec
Q 012176 263 TDQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDF 339 (469)
Q Consensus 263 ~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 339 (469)
.+...|+.+|.+.+.+++.++.+ +|+++++|+||.|.++....... .......... .. ....+
T Consensus 154 --~~~~~Y~asK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~-~~~~~~~~~~-~~----------~~~r~ 219 (266)
T 3p19_A 154 --PDHAAYCGTKFAVHAISENVREEVAASNVRVMTIAPSAVKTELLSHTTS-QQIKDGYDAW-RV----------DMGGV 219 (266)
T ss_dssp --TTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBSSSGGGGCSC-HHHHHHHHHH-HH----------HTTCC
T ss_pred --CCCchHHHHHHHHHHHHHHHHHHhcccCcEEEEEeeCccccchhhcccc-hhhhHHHHhh-cc----------cccCC
Confidence 34578999999999999999877 48999999999999875332111 1111111100 00 11236
Q ss_pred ccHHHHHHHHHHHhccCC
Q 012176 340 TYIDDVVKGCVGATGSGG 357 (469)
Q Consensus 340 v~v~Dva~~~~~~~~~~~ 357 (469)
++++|+|++++.++.++.
T Consensus 220 ~~pedvA~av~~l~~~~~ 237 (266)
T 3p19_A 220 LAADDVARAVLFAYQQPQ 237 (266)
T ss_dssp BCHHHHHHHHHHHHHSCT
T ss_pred CCHHHHHHHHHHHHcCCC
Confidence 789999999999998774
|
| >3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5} | Back alignment and structure |
|---|
Probab=99.89 E-value=7.7e-22 Score=189.30 Aligned_cols=206 Identities=14% Similarity=0.058 Sum_probs=150.2
Q ss_pred CCCCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhh-ccCCeEEEEecCCCHHHHHHhhcc
Q 012176 113 PRRPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLL-QKHQVFIVEGDLNDAPLLTKLFDV 191 (469)
Q Consensus 113 ~~~~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~v~~v~~Dl~d~~~l~~~~~~ 191 (469)
|...++|+||||||+|+||++++++|+++|++|++++|+.+ .......... ....+.++.+|++|.++++++++.
T Consensus 24 m~~l~~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~----~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~ 99 (262)
T 3rkr_A 24 MSSLSGQVAVVTGASRGIGAAIARKLGSLGARVVLTARDVE----KLRAVEREIVAAGGEAESHACDLSHSDAIAAFATG 99 (262)
T ss_dssp -CTTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHH----HHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHH
T ss_pred hhccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEECCHH----HHHHHHHHHHHhCCceeEEEecCCCHHHHHHHHHH
Confidence 44567899999999999999999999999999999999543 1222222221 134789999999999999998876
Q ss_pred C-----CccEEEEcccccCh-----hhhccChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEEcCccccCCCCCCCC
Q 012176 192 V-----PFTHVLHLAAQAGV-----RYAMQNPQSYVASNIAGFVNLLEVCKS----VNPQPSIVWASSSSVYGLNTQVPF 257 (469)
Q Consensus 192 ~-----~~d~Vih~Aa~~~~-----~~~~~~~~~~~~~Nv~~~~~ll~aa~~----~~~~~~~V~~SS~~vyg~~~~~~~ 257 (469)
+ ++|+||||||.... ....++.+..+++|+.++.++++++.. .+. ++||++||...+.+.
T Consensus 100 ~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~-g~iv~isS~~~~~~~----- 173 (262)
T 3rkr_A 100 VLAAHGRCDVLVNNAGVGWFGGPLHTMKPAEWDALIAVNLKAPYLLLRAFAPAMIAAKR-GHIINISSLAGKNPV----- 173 (262)
T ss_dssp HHHHHSCCSEEEECCCCCCCSSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTC-CEEEEECSSCSSCCC-----
T ss_pred HHHhcCCCCEEEECCCccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCC-ceEEEEechhhcCCC-----
Confidence 4 67999999997221 223445567899999999999998643 444 499999998776432
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCc
Q 012176 258 SESHRTDQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDRE 334 (469)
Q Consensus 258 ~E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 334 (469)
.+...|+.+|.+.+.+++.++.+ .|+++++|+||.|..+.... + .. ..
T Consensus 174 -------~~~~~Y~asKaa~~~l~~~la~e~~~~gi~v~~v~PG~v~t~~~~~------~----~~------------~~ 224 (262)
T 3rkr_A 174 -------ADGAAYTASKWGLNGLMTSAAEELRQHQVRVSLVAPGSVRTEFGVG------L----SA------------KK 224 (262)
T ss_dssp -------TTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCC----------------------------------
T ss_pred -------CCCchHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCCcCCcccc------c----cc------------cc
Confidence 34578999999999999999876 48999999999998763221 0 00 11
Q ss_pred ceEecccHHHHHHHHHHHhccCC
Q 012176 335 VARDFTYIDDVVKGCVGATGSGG 357 (469)
Q Consensus 335 ~~~~~v~v~Dva~~~~~~~~~~~ 357 (469)
....++.++|+|++++.++....
T Consensus 225 ~~~~~~~p~dvA~~v~~l~s~~~ 247 (262)
T 3rkr_A 225 SALGAIEPDDIADVVALLATQAD 247 (262)
T ss_dssp ----CCCHHHHHHHHHHHHTCCT
T ss_pred ccccCCCHHHHHHHHHHHhcCcc
Confidence 12346789999999999987653
|
| >1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl reductase, oxidoreductase; 1.49A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A | Back alignment and structure |
|---|
Probab=99.89 E-value=4.7e-22 Score=189.15 Aligned_cols=216 Identities=16% Similarity=0.051 Sum_probs=158.0
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccC---
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~--- 192 (469)
.++|+|+||||+|+||++++++|+++|++|++++|+.+... .+..+.+|++|+++++++++.+
T Consensus 13 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~--------------~~~~~~~D~~~~~~~~~~~~~~~~~ 78 (247)
T 1uzm_A 13 FVSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGAPK--------------GLFGVEVDVTDSDAVDRAFTAVEEH 78 (247)
T ss_dssp CCCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSSCCCT--------------TSEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHHH--------------HhcCeeccCCCHHHHHHHHHHHHHH
Confidence 57799999999999999999999999999999999654322 1123889999999999888754
Q ss_pred --CccEEEEcccccCh----hhhccChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEEcCccccCCCCCCCCCCCCC
Q 012176 193 --PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCKS----VNPQPSIVWASSSSVYGLNTQVPFSESHR 262 (469)
Q Consensus 193 --~~d~Vih~Aa~~~~----~~~~~~~~~~~~~Nv~~~~~ll~aa~~----~~~~~~~V~~SS~~vyg~~~~~~~~E~~~ 262 (469)
++|+||||||.... ....++++..+++|+.++.++++++.. .+. ++||++||...+.+.
T Consensus 79 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~-g~iv~isS~~~~~~~---------- 147 (247)
T 1uzm_A 79 QGPVEVLVSNAGLSADAFLMRMTEEKFEKVINANLTGAFRVAQRASRSMQRNKF-GRMIFIGSVSGLWGI---------- 147 (247)
T ss_dssp HSSCSEEEEECSCCC-----CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTC-EEEEEECCCCC--------------
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCC-CEEEEECCHhhccCC----------
Confidence 57999999997542 123455678999999999999998753 444 399999997654321
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceEec
Q 012176 263 TDQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDF 339 (469)
Q Consensus 263 ~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 339 (469)
.+...|+.+|.+.+.+++.++.+ +|+++++|+||.|.++..... ...+...+....+ ...+
T Consensus 148 --~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~--~~~~~~~~~~~~p------------~~~~ 211 (247)
T 1uzm_A 148 --GNQANYAASKAGVIGMARSIARELSKANVTANVVAPGYIDTDMTRAL--DERIQQGALQFIP------------AKRV 211 (247)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHHS--CHHHHHHHGGGCT------------TCSC
T ss_pred --CCChhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEEeCCCcccchhhc--CHHHHHHHHhcCC------------CCCC
Confidence 24568999999999999999876 489999999999987521100 0111122211111 1247
Q ss_pred ccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCCc
Q 012176 340 TYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTSP 375 (469)
Q Consensus 340 v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~~ 375 (469)
.+++|+|++++.++..... ...|+++++.++..
T Consensus 212 ~~~~dvA~~~~~l~s~~~~---~~~G~~i~vdgG~~ 244 (247)
T 1uzm_A 212 GTPAEVAGVVSFLASEDAS---YISGAVIPVDGGMG 244 (247)
T ss_dssp BCHHHHHHHHHHHHSGGGT---TCCSCEEEESTTTT
T ss_pred cCHHHHHHHHHHHcCcccc---CCcCCEEEECCCcc
Confidence 8999999999998865321 24569999988754
|
| >3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.89 E-value=5.1e-22 Score=189.53 Aligned_cols=209 Identities=10% Similarity=-0.003 Sum_probs=146.3
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhc-cCCeEEEEecCCCHHHHHHhhccC--
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQ-KHQVFIVEGDLNDAPLLTKLFDVV-- 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~v~~v~~Dl~d~~~l~~~~~~~-- 192 (469)
.++|+|+||||+|+||++++++|+++|++|++++|+.+... ........ ..++.++.+|++|+++++++++.+
T Consensus 5 ~~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~----~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 80 (252)
T 3h7a_A 5 PRNATVAVIGAGDYIGAEIAKKFAAEGFTVFAGRRNGEKLA----PLVAEIEAAGGRIVARSLDARNEDEVTAFLNAADA 80 (252)
T ss_dssp CCSCEEEEECCSSHHHHHHHHHHHHTTCEEEEEESSGGGGH----HHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHH----HHHHHHHhcCCeEEEEECcCCCHHHHHHHHHHHHh
Confidence 56789999999999999999999999999999999654322 22222211 347899999999999999988754
Q ss_pred --CccEEEEcccccCh----hhhccChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEEcCccccCCCCCCCCCCCCC
Q 012176 193 --PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCK----SVNPQPSIVWASSSSVYGLNTQVPFSESHR 262 (469)
Q Consensus 193 --~~d~Vih~Aa~~~~----~~~~~~~~~~~~~Nv~~~~~ll~aa~----~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~ 262 (469)
++|+||||||.... ....++.+..+++|+.++..+++++. +.+. ++||++||...+.+.
T Consensus 81 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~-g~iv~isS~~~~~~~---------- 149 (252)
T 3h7a_A 81 HAPLEVTIFNVGANVNFPILETTDRVFRKVWEMACWAGFVSGRESARLMLAHGQ-GKIFFTGATASLRGG---------- 149 (252)
T ss_dssp HSCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-EEEEEEEEGGGTCCC----------
T ss_pred hCCceEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCC-cEEEEECCHHHcCCC----------
Confidence 67999999997443 23345566889999999999988763 3444 399999997765422
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHh---CCcE-EEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceEe
Q 012176 263 TDQPASLYAATKKAGEEIAHTYNHIY---GLAL-TGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARD 338 (469)
Q Consensus 263 ~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~-~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 338 (469)
.....|+.+|.+.+.+++.++.++ |+++ ++|+||.|..+..... ........ .......
T Consensus 150 --~~~~~Y~asKaa~~~l~~~la~e~~~~gi~v~n~v~PG~v~T~~~~~~--~~~~~~~~------------~~~~~~~- 212 (252)
T 3h7a_A 150 --SGFAAFASAKFGLRAVAQSMARELMPKNIHVAHLIIDSGVDTAWVRER--REQMFGKD------------ALANPDL- 212 (252)
T ss_dssp --TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEC-----------------------------------------
T ss_pred --CCCccHHHHHHHHHHHHHHHHHHhhhcCCEEEEEecCCccCChhhhcc--chhhhhhh------------hhcCCcc-
Confidence 345789999999999999998774 7999 8999999987643321 00110000 0011223
Q ss_pred cccHHHHHHHHHHHhccC
Q 012176 339 FTYIDDVVKGCVGATGSG 356 (469)
Q Consensus 339 ~v~v~Dva~~~~~~~~~~ 356 (469)
+..++|+|++++.++..+
T Consensus 213 ~~~pedvA~~~~~l~s~~ 230 (252)
T 3h7a_A 213 LMPPAAVAGAYWQLYQQP 230 (252)
T ss_dssp -CCHHHHHHHHHHHHHCC
T ss_pred CCCHHHHHHHHHHHHhCc
Confidence 889999999999998765
|
| >3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.88 E-value=3.3e-22 Score=192.12 Aligned_cols=210 Identities=13% Similarity=0.087 Sum_probs=149.3
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhc-cCCeEEEEecCCCHHHHHHhhccC--
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQ-KHQVFIVEGDLNDAPLLTKLFDVV-- 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~v~~v~~Dl~d~~~l~~~~~~~-- 192 (469)
.++|+||||||+|+||++++++|+++|++|++++|+.+ ........... ...+.++.+|++|+++++++++..
T Consensus 2 l~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~----~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~ 77 (264)
T 3tfo_A 2 VMDKVILITGASGGIGEGIARELGVAGAKILLGARRQA----RIEAIATEIRDAGGTALAQVLDVTDRHSVAAFAQAAVD 77 (264)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHH----HHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEECCHH----HHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHH
Confidence 45789999999999999999999999999999999543 22222222211 346889999999999999888754
Q ss_pred ---CccEEEEcccccChh----hhccChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEEcCccccCCCCCCCCCCCC
Q 012176 193 ---PFTHVLHLAAQAGVR----YAMQNPQSYVASNIAGFVNLLEVCKS----VNPQPSIVWASSSSVYGLNTQVPFSESH 261 (469)
Q Consensus 193 ---~~d~Vih~Aa~~~~~----~~~~~~~~~~~~Nv~~~~~ll~aa~~----~~~~~~~V~~SS~~vyg~~~~~~~~E~~ 261 (469)
++|+||||||..... ...++.+..+++|+.++..+++++.. .+. ++||++||...+.+.
T Consensus 78 ~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~-g~IV~isS~~~~~~~--------- 147 (264)
T 3tfo_A 78 TWGRIDVLVNNAGVMPLSPLAAVKVDEWERMIDVNIKGVLWGIGAVLPIMEAQRS-GQIINIGSIGALSVV--------- 147 (264)
T ss_dssp HHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-EEEEEECCGGGTCCC---------
T ss_pred HcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCC-eEEEEEcCHHHcccC---------
Confidence 679999999975332 23455667899999999998887643 344 399999998776432
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHh-CCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceEecc
Q 012176 262 RTDQPASLYAATKKAGEEIAHTYNHIY-GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFT 340 (469)
Q Consensus 262 ~~~~p~~~Y~~sK~~~E~~~~~~~~~~-gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v 340 (469)
.....|+.+|.+.+.+++.++.++ |+++++|+||.|..+..... ......... ......+.
T Consensus 148 ---~~~~~Y~asKaal~~l~~~la~e~~gIrvn~v~PG~v~T~~~~~~----------~~~~~~~~~-----~~~~~~~~ 209 (264)
T 3tfo_A 148 ---PTAAVYCATKFAVRAISDGLRQESTNIRVTCVNPGVVESELAGTI----------THEETMAAM-----DTYRAIAL 209 (264)
T ss_dssp ---TTCHHHHHHHHHHHHHHHHHHHHCSSEEEEEEEECCC--------------------------------------CC
T ss_pred ---CCChhHHHHHHHHHHHHHHHHHhCCCCEEEEEecCCCcCcccccc----------cchhHHHHH-----HhhhccCC
Confidence 345689999999999999999876 89999999999988643210 000000000 00111247
Q ss_pred cHHHHHHHHHHHhccCC
Q 012176 341 YIDDVVKGCVGATGSGG 357 (469)
Q Consensus 341 ~v~Dva~~~~~~~~~~~ 357 (469)
.++|+|++++.++..+.
T Consensus 210 ~pedvA~~v~~l~s~~~ 226 (264)
T 3tfo_A 210 QPADIARAVRQVIEAPQ 226 (264)
T ss_dssp CHHHHHHHHHHHHHSCT
T ss_pred CHHHHHHHHHHHhcCCc
Confidence 89999999999998764
|
| >2x9g_A PTR1, pteridine reductase; short chain dehydrogenase, oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A* 3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A* 3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A* 3jq6_A* ... | Back alignment and structure |
|---|
Probab=99.88 E-value=1.6e-21 Score=189.80 Aligned_cols=226 Identities=12% Similarity=0.046 Sum_probs=164.4
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhh--ccCCeEEEEecCCC----HHHHHHhh
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLL--QKHQVFIVEGDLND----APLLTKLF 189 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~v~~v~~Dl~d----~~~l~~~~ 189 (469)
.++|+|+||||+|+||++++++|+++|++|++++|+.. ........... ...++.++.+|++| .+++++++
T Consensus 21 l~~k~~lVTGas~gIG~aia~~L~~~G~~V~~~~r~~~---~~~~~~~~~l~~~~~~~~~~~~~Dv~~~~~~~~~v~~~~ 97 (288)
T 2x9g_A 21 MEAPAAVVTGAAKRIGRAIAVKLHQTGYRVVIHYHNSA---EAAVSLADELNKERSNTAVVCQADLTNSNVLPASCEEII 97 (288)
T ss_dssp -CCCEEEETTCSSHHHHHHHHHHHHHTCEEEEEESSCH---HHHHHHHHHHHHHSTTCEEEEECCCSCSTTHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCeEEEEeCCch---HHHHHHHHHHHhhcCCceEEEEeecCCccCCHHHHHHHH
Confidence 67899999999999999999999999999999999641 11222222211 13478999999999 99888888
Q ss_pred ccC-----CccEEEEcccccCh---------h-----hhccChHHHHHHHHHHHHHHHHHHHhcCC---------CCeEE
Q 012176 190 DVV-----PFTHVLHLAAQAGV---------R-----YAMQNPQSYVASNIAGFVNLLEVCKSVNP---------QPSIV 241 (469)
Q Consensus 190 ~~~-----~~d~Vih~Aa~~~~---------~-----~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~---------~~~~V 241 (469)
+.+ ++|+||||||.... . ...++.+..+++|+.++..+++++..... .++||
T Consensus 98 ~~~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~g~iv 177 (288)
T 2x9g_A 98 NSCFRAFGRCDVLVNNASAFYPTPLVQGDHEDNSNGKTVETQVAELIGTNAIAPFLLTMSFAQRQKGTNPNCTSSNLSIV 177 (288)
T ss_dssp HHHHHHHSCCCEEEECCCCCCCCCSCCC--------CCHHHHHHHHHHHHTHHHHHHHHHHHHHC--------CCCEEEE
T ss_pred HHHHHhcCCCCEEEECCCCCCCCccccccchhcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCCCCCCCeEEE
Confidence 743 67999999997432 1 23344567899999999999998764321 24899
Q ss_pred EEcCccccCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCCCCChHHHHHHHH
Q 012176 242 WASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDI 318 (469)
Q Consensus 242 ~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~ 318 (469)
++||...+.+. .+...|+.+|.+.+.+++.++.++ |+++++|+||.|+++. .. . ......+
T Consensus 178 ~isS~~~~~~~------------~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~t~~-~~--~-~~~~~~~ 241 (288)
T 2x9g_A 178 NLCDAMVDQPC------------MAFSLYNMGKHALVGLTQSAALELAPYGIRVNGVAPGVSLLPV-AM--G-EEEKDKW 241 (288)
T ss_dssp EECCTTTTSCC------------TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSCSCCT-TS--C-HHHHHHH
T ss_pred EEecccccCCC------------CCCchHHHHHHHHHHHHHHHHHHhhccCeEEEEEEeccccCcc-cc--C-hHHHHHH
Confidence 99998776432 345789999999999999998775 8999999999999986 31 1 1222233
Q ss_pred HcCCceEEEeeCCCCcceEec-ccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCCc
Q 012176 319 LQGKTIDVYKTQDDREVARDF-TYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTSP 375 (469)
Q Consensus 319 ~~g~~~~~~~~~~~~~~~~~~-v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~~ 375 (469)
....++ ..+ ..++|+|++++.++..... ...|+++++.+|..
T Consensus 242 ~~~~p~------------~r~~~~pedvA~~v~~l~s~~~~---~itG~~i~vdGG~~ 284 (288)
T 2x9g_A 242 RRKVPL------------GRREASAEQIADAVIFLVSGSAQ---YITGSIIKVDGGLS 284 (288)
T ss_dssp HHTCTT------------TSSCCCHHHHHHHHHHHHSGGGT---TCCSCEEEESTTGG
T ss_pred HhhCCC------------CCCCCCHHHHHHHHHHHhCcccc---CccCCEEEECcchh
Confidence 222221 123 6799999999999865322 34568999988753
|
| >4b79_A PA4098, probable short-chain dehydrogenase; oxidoreductase, infectious disease, structure-based inhibito; HET: NAD; 1.98A {Pseudomonas aeruginosa PAO1} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.6e-21 Score=183.45 Aligned_cols=223 Identities=17% Similarity=0.151 Sum_probs=167.5
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccC-Cc
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV-PF 194 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~-~~ 194 (469)
.+||+++||||++.||+.+++.|+++|++|++++|+.+.... ....++..+.+|++|+++++++++.. ++
T Consensus 9 f~GK~alVTGas~GIG~aia~~la~~Ga~Vv~~~~~~~~~~~---------~~~~~~~~~~~Dv~~~~~v~~~~~~~g~i 79 (242)
T 4b79_A 9 YAGQQVLVTGGSSGIGAAIAMQFAELGAEVVALGLDADGVHA---------PRHPRIRREELDITDSQRLQRLFEALPRL 79 (242)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTSTTS---------CCCTTEEEEECCTTCHHHHHHHHHHCSCC
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHhh---------hhcCCeEEEEecCCCHHHHHHHHHhcCCC
Confidence 579999999999999999999999999999999997654332 12348899999999999999999876 68
Q ss_pred cEEEEcccccCh--hhhccChHHHHHHHHHHHHHHHHHHHhcC--CCCeEEEEcCccccCCCCCCCCCCCCCCCCCCChH
Q 012176 195 THVLHLAAQAGV--RYAMQNPQSYVASNIAGFVNLLEVCKSVN--PQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLY 270 (469)
Q Consensus 195 d~Vih~Aa~~~~--~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~--~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y 270 (469)
|++|||||.... ....++++..+++|+.++..+.+++..+- ..++||++||...+.+. .....|
T Consensus 80 DiLVNNAGi~~~~~~~~~~~w~~~~~vNl~g~~~~~~~~~p~m~~~~G~IVnisS~~~~~~~------------~~~~~Y 147 (242)
T 4b79_A 80 DVLVNNAGISRDREEYDLATFERVLRLNLSAAMLASQLARPLLAQRGGSILNIASMYSTFGS------------ADRPAY 147 (242)
T ss_dssp SEEEECCCCCCGGGGGSHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCEEEEEECCGGGTSCC------------SSCHHH
T ss_pred CEEEECCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEeeccccCCC------------CCCHHH
Confidence 999999997543 23445667899999999999888764321 11489999997655322 234689
Q ss_pred HHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceEecccHHHHHH
Q 012176 271 AATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVK 347 (469)
Q Consensus 271 ~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~ 347 (469)
+.+|.+.+.+.+.++.++ ||+++.|.||.|..|.......-....+.+.+..|+. .+..++|+|.
T Consensus 148 ~asKaav~~ltr~lA~Ela~~gIrVNaV~PG~i~T~m~~~~~~~~~~~~~~~~~~Plg------------R~g~peeiA~ 215 (242)
T 4b79_A 148 SASKGAIVQLTRSLACEYAAERIRVNAIAPGWIDTPLGAGLKADVEATRRIMQRTPLA------------RWGEAPEVAS 215 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCC-----CCCHHHHHHHHHTCTTC------------SCBCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhcCeEEEEEEeCCCCChhhhcccCCHHHHHHHHhcCCCC------------CCcCHHHHHH
Confidence 999999999999998774 8999999999998874332111123445555555542 2456899999
Q ss_pred HHHHHhccCCCCCCCCCceEEEeCCCC
Q 012176 348 GCVGATGSGGKKRGPAQLRVYNLGNTS 374 (469)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~iyni~~~~ 374 (469)
+++.++..... -..|+++.+.+|-
T Consensus 216 ~v~fLaSd~a~---~iTG~~l~VDGG~ 239 (242)
T 4b79_A 216 AAAFLCGPGAS---FVTGAVLAVDGGY 239 (242)
T ss_dssp HHHHHTSGGGT---TCCSCEEEESTTG
T ss_pred HHHHHhCchhc---CccCceEEECccH
Confidence 99988754422 3456899887763
|
| >4e4y_A Short chain dehydrogenase family protein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; 1.80A {Francisella tularensis subsp} | Back alignment and structure |
|---|
Probab=99.88 E-value=3.1e-22 Score=190.02 Aligned_cols=220 Identities=13% Similarity=0.099 Sum_probs=163.3
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHH-CCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccC--
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKK-RGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV-- 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~-~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~-- 192 (469)
.++|+||||||+|+||++++++|++ .|+.|++++|..... ...+.++.+|++|+++++++++..
T Consensus 2 ~~~k~vlITGas~gIG~~~a~~l~~~~g~~v~~~~~~~~~~-------------~~~~~~~~~Dv~~~~~v~~~~~~~~~ 68 (244)
T 4e4y_A 2 NAMANYLVTGGSKGIGKAVVELLLQNKNHTVINIDIQQSFS-------------AENLKFIKADLTKQQDITNVLDIIKN 68 (244)
T ss_dssp -CCEEEEEETTTSHHHHHHHHHHTTSTTEEEEEEESSCCCC-------------CTTEEEEECCTTCHHHHHHHHHHTTT
T ss_pred CCCCeEEEeCCCChHHHHHHHHHHhcCCcEEEEeccccccc-------------cccceEEecCcCCHHHHHHHHHHHHh
Confidence 3568999999999999999999999 799999999865411 236789999999999999888643
Q ss_pred -CccEEEEcccccCh----hhhccChHHHHHHHHHHHHHHHHHHHhcCCC-CeEEEEcCccccCCCCCCCCCCCCCCCCC
Q 012176 193 -PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCKSVNPQ-PSIVWASSSSVYGLNTQVPFSESHRTDQP 266 (469)
Q Consensus 193 -~~d~Vih~Aa~~~~----~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~-~~~V~~SS~~vyg~~~~~~~~E~~~~~~p 266 (469)
++|+||||||.... ....++++..+++|+.++.++++++.....+ ++||++||...+.+. .+
T Consensus 69 ~~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~------------~~ 136 (244)
T 4e4y_A 69 VSFDGIFLNAGILIKGSIFDIDIESIKKVLDLNVWSSIYFIKGLENNLKVGASIVFNGSDQCFIAK------------PN 136 (244)
T ss_dssp CCEEEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHTGGGEEEEEEEEEECCGGGTCCC------------TT
T ss_pred CCCCEEEECCccCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHhccCcEEEEECCHHHccCC------------CC
Confidence 67999999997432 2334556688999999999999998764221 389999998776432 34
Q ss_pred CChHHHHHHHHHHHHHHHHHH---hCCcEEEEeecceecCCCCCCC---------hHHHHHHHHHcCCceEEEeeCCCCc
Q 012176 267 ASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPDM---------AYFFFTKDILQGKTIDVYKTQDDRE 334 (469)
Q Consensus 267 ~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~Gp~~~~~~---------~~~~~~~~~~~g~~~~~~~~~~~~~ 334 (469)
...|+.+|.+.+.+++.++.+ +|+++++|+||.|.++...... .............+
T Consensus 137 ~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p----------- 205 (244)
T 4e4y_A 137 SFAYTLSKGAIAQMTKSLALDLAKYQIRVNTVCPGTVDTDLYRNLIQKYANNVGISFDEAQKQEEKEFP----------- 205 (244)
T ss_dssp BHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEESCBCCHHHHHHHHHHHHHHTCCHHHHHHHHHTTST-----------
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHcCeEEEEEecCccCchhhHHHHHhhhhhcCCCHHHHHHHHhhcCC-----------
Confidence 568999999999999999875 4899999999999886321100 00012222222222
Q ss_pred ceEecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCCc
Q 012176 335 VARDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTSP 375 (469)
Q Consensus 335 ~~~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~~ 375 (469)
...+.+++|+|++++.++..... ...|+++++.+|..
T Consensus 206 -~~r~~~p~dvA~~v~~l~s~~~~---~itG~~i~vdGG~~ 242 (244)
T 4e4y_A 206 -LNRIAQPQEIAELVIFLLSDKSK---FMTGGLIPIDGGYT 242 (244)
T ss_dssp -TSSCBCHHHHHHHHHHHHSGGGT---TCCSCEEEESTTGG
T ss_pred -CCCCcCHHHHHHHHHHHhcCccc---cccCCeEeECCCcc
Confidence 23477899999999999875432 34569999988753
|
| >2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.3e-21 Score=184.24 Aligned_cols=196 Identities=14% Similarity=0.047 Sum_probs=141.7
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccC----
Q 012176 117 NGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV---- 192 (469)
Q Consensus 117 ~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~---- 192 (469)
.+|+|+||||+|+||++++++|+++|++|++++|+.. ........ ..++.++.+|++|.++++++++..
T Consensus 4 ~~k~vlVtGasggiG~~~a~~l~~~G~~V~~~~r~~~----~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 76 (234)
T 2ehd_A 4 MKGAVLITGASRGIGEATARLLHAKGYRVGLMARDEK----RLQALAAE---LEGALPLPGDVREEGDWARAVAAMEEAF 76 (234)
T ss_dssp CCCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHH----HHHHHHHH---STTCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHH----HHHHHHHH---hhhceEEEecCCCHHHHHHHHHHHHHHc
Confidence 4578999999999999999999999999999998432 11111111 127889999999999998888754
Q ss_pred -CccEEEEcccccChh----hhccChHHHHHHHHHHHHHHHHH----HHhcCCCCeEEEEcCccccCCCCCCCCCCCCCC
Q 012176 193 -PFTHVLHLAAQAGVR----YAMQNPQSYVASNIAGFVNLLEV----CKSVNPQPSIVWASSSSVYGLNTQVPFSESHRT 263 (469)
Q Consensus 193 -~~d~Vih~Aa~~~~~----~~~~~~~~~~~~Nv~~~~~ll~a----a~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~ 263 (469)
++|+||||||..... ...++.+..+++|+.++.+++++ +++.+.. +||++||..++.+.
T Consensus 77 ~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~~-~iv~isS~~~~~~~----------- 144 (234)
T 2ehd_A 77 GELSALVNNAGVGVMKPVHELTLEEWRLVLDTNLTGAFLGIRHAVPALLRRGGG-TIVNVGSLAGKNPF----------- 144 (234)
T ss_dssp SCCCEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCE-EEEEECCTTTTSCC-----------
T ss_pred CCCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCc-EEEEECCchhcCCC-----------
Confidence 679999999974321 23345567899999999866655 4455554 99999998876432
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceEecc
Q 012176 264 DQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFT 340 (469)
Q Consensus 264 ~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v 340 (469)
.+...|+.+|.+.|.+++.++.+ .|+++++||||.|.++.... . +. . ..++
T Consensus 145 -~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~----------~----~~--------~---~~~~ 198 (234)
T 2ehd_A 145 -KGGAAYNASKFGLLGLAGAAMLDLREANVRVVNVLPGSVDTGFAGN----------T----PG--------Q---AWKL 198 (234)
T ss_dssp -TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEECC-----------------------------------------C
T ss_pred -CCCchhhHHHHHHHHHHHHHHHHHhhcCcEEEEEEeCCCcCCcccc----------c----cc--------c---cCCC
Confidence 34578999999999999988766 48999999999987753211 0 00 0 0157
Q ss_pred cHHHHHHHHHHHhccCC
Q 012176 341 YIDDVVKGCVGATGSGG 357 (469)
Q Consensus 341 ~v~Dva~~~~~~~~~~~ 357 (469)
+++|+|++++.++..+.
T Consensus 199 ~~~dvA~~~~~l~~~~~ 215 (234)
T 2ehd_A 199 KPEDVAQAVLFALEMPG 215 (234)
T ss_dssp CHHHHHHHHHHHHHSCC
T ss_pred CHHHHHHHHHHHhCCCc
Confidence 89999999999987753
|
| >3kzv_A Uncharacterized oxidoreductase YIR035C; cytoplasmic protein, unknown function, structural genomics, MCSG, protein structure initiative; 2.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.88 E-value=6.4e-22 Score=189.01 Aligned_cols=223 Identities=16% Similarity=0.097 Sum_probs=161.7
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHCC--CcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccC---
Q 012176 118 GMTVLVTGAAGFVGSHCSLALKKRG--DGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (469)
Q Consensus 118 ~~~VlVtGatG~IG~~l~~~L~~~G--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~--- 192 (469)
+|+++||||+|+||++++++|+++| +.|++++|+.+ ......... ..++.++.+|++|+++++++++..
T Consensus 2 gk~~lVTGas~GIG~aia~~l~~~g~~~~v~~~~r~~~----~~~~~~~~~--~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 75 (254)
T 3kzv_A 2 GKVILVTGVSRGIGKSIVDVLFSLDKDTVVYGVARSEA----PLKKLKEKY--GDRFFYVVGDITEDSVLKQLVNAAVKG 75 (254)
T ss_dssp CCEEEECSTTSHHHHHHHHHHHHHCSSCEEEEEESCHH----HHHHHHHHH--GGGEEEEESCTTSHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCchHHHHHHHHHHhcCCCeEEEEecCCHH----HHHHHHHHh--CCceEEEECCCCCHHHHHHHHHHHHHh
Confidence 5799999999999999999999985 78888888532 122222221 347899999999999999988754
Q ss_pred --CccEEEEcccccCh-----hhhccChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEEcCccccCCCCCCCCCCCC
Q 012176 193 --PFTHVLHLAAQAGV-----RYAMQNPQSYVASNIAGFVNLLEVC----KSVNPQPSIVWASSSSVYGLNTQVPFSESH 261 (469)
Q Consensus 193 --~~d~Vih~Aa~~~~-----~~~~~~~~~~~~~Nv~~~~~ll~aa----~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~ 261 (469)
++|+||||||.... ....++++..+++|+.++.++++++ ++.+ ++||++||...+.+.
T Consensus 76 ~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~--g~iv~isS~~~~~~~--------- 144 (254)
T 3kzv_A 76 HGKIDSLVANAGVLEPVQNVNEIDVNAWKKLYDINFFSIVSLVGIALPELKKTN--GNVVFVSSDACNMYF--------- 144 (254)
T ss_dssp HSCCCEEEEECCCCCCCTTTTSCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEECCSCCCCSS---------
T ss_pred cCCccEEEECCcccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC--CeEEEEcCchhccCC---------
Confidence 78999999997432 2234455679999999999999987 4444 499999998766432
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHh-CCcEEEEeecceecCCCCCCC-------hHHHHHHHHHcCCceEEEeeCCCC
Q 012176 262 RTDQPASLYAATKKAGEEIAHTYNHIY-GLALTGLRFFTVYGPWGRPDM-------AYFFFTKDILQGKTIDVYKTQDDR 333 (469)
Q Consensus 262 ~~~~p~~~Y~~sK~~~E~~~~~~~~~~-gi~~~ilRp~~v~Gp~~~~~~-------~~~~~~~~~~~g~~~~~~~~~~~~ 333 (469)
.+...|+.+|.+.+.+++.++.++ |+++++|+||.|.++...... ........+....++
T Consensus 145 ---~~~~~Y~asK~a~~~~~~~la~e~~~i~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 212 (254)
T 3kzv_A 145 ---SSWGAYGSSKAALNHFAMTLANEERQVKAIAVAPGIVDTDMQVNIRENVGPSSMSAEQLKMFRGLKEN--------- 212 (254)
T ss_dssp ---CCSHHHHHHHHHHHHHHHHHHHHCTTSEEEEEECSSCCCCCSCCCCCCCCTTTSCHHHHHHHHHHHTT---------
T ss_pred ---CCcchHHHHHHHHHHHHHHHHhhccCcEEEEEeCCcccchhHHHhhcccCccccCHHHHHHHHHHHhc---------
Confidence 345789999999999999999875 899999999999987543210 012222222222221
Q ss_pred cceEecccHHHHHHHHHHHhccCC-CCCCCCCceEEEeCCCCc
Q 012176 334 EVARDFTYIDDVVKGCVGATGSGG-KKRGPAQLRVYNLGNTSP 375 (469)
Q Consensus 334 ~~~~~~v~v~Dva~~~~~~~~~~~-~~~~~~~~~iyni~~~~~ 375 (469)
..+.+++|+|++++.++.... . -..|+++++.+++.
T Consensus 213 ---~r~~~p~dva~~v~~L~s~~~~~---~itG~~i~vdg~~~ 249 (254)
T 3kzv_A 213 ---NQLLDSSVPATVYAKLALHGIPD---GVNGQYLSYNDPAL 249 (254)
T ss_dssp ---C----CHHHHHHHHHHHHHCCCG---GGTTCEEETTCGGG
T ss_pred ---CCcCCcccHHHHHHHHHhhcccC---CCCccEEEecCccc
Confidence 235678999999999887651 2 24569999888764
|
| >3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1} | Back alignment and structure |
|---|
Probab=99.88 E-value=2.3e-22 Score=193.09 Aligned_cols=234 Identities=10% Similarity=0.030 Sum_probs=160.7
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhc-cCCeEEEEecCCCHHHHHHhhccC-
Q 012176 115 RPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQ-KHQVFIVEGDLNDAPLLTKLFDVV- 192 (469)
Q Consensus 115 ~~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~v~~v~~Dl~d~~~l~~~~~~~- 192 (469)
..++|+||||||+|+||++++++|+++|++|++++|..... ............ ..++.++.+|++|+++++++++.+
T Consensus 8 ~l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~-~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~ 86 (262)
T 3ksu_A 8 DLKNKVIVIAGGIKNLGALTAKTFALESVNLVLHYHQAKDS-DTANKLKDELEDQGAKVALYQSDLSNEEEVAKLFDFAE 86 (262)
T ss_dssp CCTTCEEEEETCSSHHHHHHHHHHTTSSCEEEEEESCGGGH-HHHHHHHHHHHTTTCEEEEEECCCCSHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecCccCH-HHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHH
Confidence 46789999999999999999999999999999998743211 111222222211 347889999999999999988754
Q ss_pred ----CccEEEEcccccChh----hhccChHHHHHHHHHHHHHHHHHHHhcC-CCCeEEEEcCccccCCCCCCCCCCCCCC
Q 012176 193 ----PFTHVLHLAAQAGVR----YAMQNPQSYVASNIAGFVNLLEVCKSVN-PQPSIVWASSSSVYGLNTQVPFSESHRT 263 (469)
Q Consensus 193 ----~~d~Vih~Aa~~~~~----~~~~~~~~~~~~Nv~~~~~ll~aa~~~~-~~~~~V~~SS~~vyg~~~~~~~~E~~~~ 263 (469)
++|+||||||..... ...++.+..+++|+.++..+++++...- ..++||++||...+...
T Consensus 87 ~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~isS~~~~~~~----------- 155 (262)
T 3ksu_A 87 KEFGKVDIAINTVGKVLKKPIVETSEAEFDAMDTINNKVAYFFIKQAAKHMNPNGHIITIATSLLAAYT----------- 155 (262)
T ss_dssp HHHCSEEEEEECCCCCCSSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEECCCHHHHHH-----------
T ss_pred HHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHhhcCCCEEEEEechhhccCC-----------
Confidence 679999999974332 2334556789999999999999987641 12389999998766432
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceEecc
Q 012176 264 DQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFT 340 (469)
Q Consensus 264 ~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v 340 (469)
.....|+.+|.+.+.+++.++.++ |+++++|+||.|..+....... ... .... ........+.
T Consensus 156 -~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~-~~~---------~~~~---~~~~~~~r~~ 221 (262)
T 3ksu_A 156 -GFYSTYAGNKAPVEHYTRAASKELMKQQISVNAIAPGPMDTSFFYGQET-KES---------TAFH---KSQAMGNQLT 221 (262)
T ss_dssp -CCCCC-----CHHHHHHHHHHHHTTTTTCEEEEEEECCCCTHHHHTCC-------------------------CCCCSC
T ss_pred -CCCchhHHHHHHHHHHHHHHHHHHHHcCcEEEEEeeCCCcCccccccCc-hHH---------HHHH---HhcCcccCCC
Confidence 234679999999999999999886 8999999999987652110000 000 0001 1112233567
Q ss_pred cHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCCcccH
Q 012176 341 YIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTSPVPV 378 (469)
Q Consensus 341 ~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~~vt~ 378 (469)
.++|+|++++.++.. .. -..|+++++.++.....
T Consensus 222 ~pedvA~~v~~L~s~-~~---~itG~~i~vdGg~~~~~ 255 (262)
T 3ksu_A 222 KIEDIAPIIKFLTTD-GW---WINGQTIFANGGYTTRE 255 (262)
T ss_dssp CGGGTHHHHHHHHTT-TT---TCCSCEEEESTTCCCC-
T ss_pred CHHHHHHHHHHHcCC-CC---CccCCEEEECCCccCCC
Confidence 899999999998865 32 34569999998865443
|
| >3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum} | Back alignment and structure |
|---|
Probab=99.88 E-value=5.5e-22 Score=189.13 Aligned_cols=209 Identities=13% Similarity=0.119 Sum_probs=161.1
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccC---
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~--- 192 (469)
..+|+|+||||+|+||++++++|+++|++|++++|...... -..+.+|++|.++++++++.+
T Consensus 20 ~m~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~---------------~~~~~~d~~d~~~v~~~~~~~~~~ 84 (251)
T 3orf_A 20 HMSKNILVLGGSGALGAEVVKFFKSKSWNTISIDFRENPNA---------------DHSFTIKDSGEEEIKSVIEKINSK 84 (251)
T ss_dssp --CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCTTS---------------SEEEECSCSSHHHHHHHHHHHHTT
T ss_pred ccCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCccccc---------------ccceEEEeCCHHHHHHHHHHHHHH
Confidence 44689999999999999999999999999999999765321 235788999999999888765
Q ss_pred --CccEEEEcccccC-----hhhhccChHHHHHHHHHHHHHHHHHHHhcCC-CCeEEEEcCccccCCCCCCCCCCCCCCC
Q 012176 193 --PFTHVLHLAAQAG-----VRYAMQNPQSYVASNIAGFVNLLEVCKSVNP-QPSIVWASSSSVYGLNTQVPFSESHRTD 264 (469)
Q Consensus 193 --~~d~Vih~Aa~~~-----~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~-~~~~V~~SS~~vyg~~~~~~~~E~~~~~ 264 (469)
++|+||||||... .....++.+..+++|+.++.++++++..... .++||++||...+.+.
T Consensus 85 ~g~iD~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~~------------ 152 (251)
T 3orf_A 85 SIKVDTFVCAAGGWSGGNASSDEFLKSVKGMIDMNLYSAFASAHIGAKLLNQGGLFVLTGASAALNRT------------ 152 (251)
T ss_dssp TCCEEEEEECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGGSCC------------
T ss_pred cCCCCEEEECCccCCCCCcccccCHHHHHHHHHHHhHHHHHHHHHHHHhhccCCEEEEEechhhccCC------------
Confidence 6899999999642 2234456678999999999999999876421 2389999998776422
Q ss_pred CCCChHHHHHHHHHHHHHHHHHH-----hCCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceEec
Q 012176 265 QPASLYAATKKAGEEIAHTYNHI-----YGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDF 339 (469)
Q Consensus 265 ~p~~~Y~~sK~~~E~~~~~~~~~-----~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 339 (469)
.+...|+.+|.+.|.+++.++.+ +|+++++|+||.|.++ +.+..... .....+
T Consensus 153 ~~~~~Y~~sKaa~~~~~~~la~e~~~~~~gi~v~~v~PG~v~t~----------~~~~~~~~------------~~~~~~ 210 (251)
T 3orf_A 153 SGMIAYGATKAATHHIIKDLASENGGLPAGSTSLGILPVTLDTP----------TNRKYMSD------------ANFDDW 210 (251)
T ss_dssp TTBHHHHHHHHHHHHHHHHHTSTTSSSCTTCEEEEEEESCBCCH----------HHHHHCTT------------SCGGGS
T ss_pred CCCchhHHHHHHHHHHHHHHHHHhcccCCCcEEEEEecCcCcCc----------chhhhccc------------cccccc
Confidence 34578999999999999999877 4799999999999775 12222111 223457
Q ss_pred ccHHHHHHHHHHHhcc-CCCCCCCCCceEEEeCCCCcc
Q 012176 340 TYIDDVVKGCVGATGS-GGKKRGPAQLRVYNLGNTSPV 376 (469)
Q Consensus 340 v~v~Dva~~~~~~~~~-~~~~~~~~~~~iyni~~~~~v 376 (469)
++++|+|++++.++.. ... ...|+++++.+++..
T Consensus 211 ~~~~dva~~i~~l~~~~~~~---~~tG~~i~v~~g~~~ 245 (251)
T 3orf_A 211 TPLSEVAEKLFEWSTNSDSR---PTNGSLVKFETKSKV 245 (251)
T ss_dssp BCHHHHHHHHHHHHHCGGGC---CCTTCEEEEEEETTE
T ss_pred CCHHHHHHHHHHHhcCcccc---CCcceEEEEecCCcc
Confidence 8899999999999887 321 345699998876644
|
| >3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.1e-21 Score=190.74 Aligned_cols=225 Identities=16% Similarity=0.116 Sum_probs=164.5
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCC---cEEEEeCCCCCCChhHHHHHHHhh---ccCCeEEEEecCCCHHHHHHhh
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGD---GVLGLDNFNSYYDPSLKRARQKLL---QKHQVFIVEGDLNDAPLLTKLF 189 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~---~V~~~~r~~~~~~~~~~~~~~~~~---~~~~v~~v~~Dl~d~~~l~~~~ 189 (469)
.++|+||||||+|+||++++++|+++|+ .|++++|+.+ .......... ...++.++.+|++|++++++++
T Consensus 31 l~~k~~lVTGas~GIG~aia~~l~~~G~~~~~V~~~~r~~~----~~~~~~~~l~~~~~~~~~~~~~~Dv~d~~~v~~~~ 106 (287)
T 3rku_A 31 LAKKTVLITGASAGIGKATALEYLEASNGDMKLILAARRLE----KLEELKKTIDQEFPNAKVHVAQLDITQAEKIKPFI 106 (287)
T ss_dssp HTTCEEEEESTTSHHHHHHHHHHHHHHTTCSEEEEEESCHH----HHHHHHHHHHHHCTTCEEEEEECCTTCGGGHHHHH
T ss_pred cCCCEEEEecCCChHHHHHHHHHHHcCCCCceEEEEECCHH----HHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHH
Confidence 5679999999999999999999999998 9999998543 2222222221 1347899999999999999999
Q ss_pred ccC-----CccEEEEcccccCh-----hhhccChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEEcCccccCCCCCC
Q 012176 190 DVV-----PFTHVLHLAAQAGV-----RYAMQNPQSYVASNIAGFVNLLEVC----KSVNPQPSIVWASSSSVYGLNTQV 255 (469)
Q Consensus 190 ~~~-----~~d~Vih~Aa~~~~-----~~~~~~~~~~~~~Nv~~~~~ll~aa----~~~~~~~~~V~~SS~~vyg~~~~~ 255 (469)
+.+ ++|+||||||.... ....++++..+++|+.++.++++++ ++.+.. +||++||...+.+.
T Consensus 107 ~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g-~IV~isS~~~~~~~--- 182 (287)
T 3rku_A 107 ENLPQEFKDIDILVNNAGKALGSDRVGQIATEDIQDVFDTNVTALINITQAVLPIFQAKNSG-DIVNLGSIAGRDAY--- 182 (287)
T ss_dssp HTSCGGGCSCCEEEECCCCCCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCC-EEEEECCGGGTSCC---
T ss_pred HHHHHhcCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-eEEEECChhhcCCC---
Confidence 865 68999999997431 1234556789999999999999987 344544 99999998766422
Q ss_pred CCCCCCCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeecceecCCCC--CCChHHHHHHHHHcCCceEEEeeC
Q 012176 256 PFSESHRTDQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGR--PDMAYFFFTKDILQGKTIDVYKTQ 330 (469)
Q Consensus 256 ~~~E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~Gp~~~--~~~~~~~~~~~~~~g~~~~~~~~~ 330 (469)
.....|+.+|.+.+.+++.++.+ +|+++++|+||.|..+... ........ .......
T Consensus 183 ---------~~~~~Y~asKaa~~~l~~~la~e~~~~gIrvn~v~PG~v~T~~~~~~~~~~~~~~-~~~~~~~-------- 244 (287)
T 3rku_A 183 ---------PTGSIYCASKFAVGAFTDSLRKELINTKIRVILIAPGLVETEFSLVRYRGNEEQA-KNVYKDT-------- 244 (287)
T ss_dssp ---------TTCHHHHHHHHHHHHHHHHHHHHTTTSSCEEEEEEESCEESSHHHHHTTTCHHHH-HHHHTTS--------
T ss_pred ---------CCCchHHHHHHHHHHHHHHHHHHhhhcCCEEEEEeCCcCcCccccccccCcHHHH-HHhhccc--------
Confidence 34578999999999999999987 4899999999999886310 00000111 1111111
Q ss_pred CCCcceEecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCCcc
Q 012176 331 DDREVARDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTSPV 376 (469)
Q Consensus 331 ~~~~~~~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~~v 376 (469)
.++.++|+|++++.++..+.. -..++++.+.++++.
T Consensus 245 -------~p~~pedvA~~v~~l~s~~~~---~i~g~~i~v~~g~~~ 280 (287)
T 3rku_A 245 -------TPLMADDVADLIVYATSRKQN---TVIADTLIFPTNQAS 280 (287)
T ss_dssp -------CCEEHHHHHHHHHHHHTSCTT---EEEEEEEEEETTEEE
T ss_pred -------CCCCHHHHHHHHHHHhCCCCC---eEecceEEeeCCCCC
Confidence 123689999999999876532 234688888877643
|
| >1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.88 E-value=1.1e-21 Score=186.95 Aligned_cols=217 Identities=13% Similarity=0.024 Sum_probs=156.0
Q ss_pred CCCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccC-
Q 012176 114 RRPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV- 192 (469)
Q Consensus 114 ~~~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~- 192 (469)
...++|+|+||||+|+||++++++|+++|++|++++|+. . .... + ..+.++ +|+ .++++++++..
T Consensus 15 ~~~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~-------~-~~~~-~--~~~~~~-~D~--~~~~~~~~~~~~ 80 (249)
T 1o5i_A 15 LGIRDKGVLVLAASRGIGRAVADVLSQEGAEVTICARNE-------E-LLKR-S--GHRYVV-CDL--RKDLDLLFEKVK 80 (249)
T ss_dssp -CCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCH-------H-HHHH-T--CSEEEE-CCT--TTCHHHHHHHSC
T ss_pred hccCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCH-------H-HHHh-h--CCeEEE-eeH--HHHHHHHHHHhc
Confidence 347789999999999999999999999999999999943 1 1111 1 256777 999 44566666544
Q ss_pred CccEEEEcccccChh----hhccChHHHHHHHHHHHHHHHHH----HHhcCCCCeEEEEcCccccCCCCCCCCCCCCCCC
Q 012176 193 PFTHVLHLAAQAGVR----YAMQNPQSYVASNIAGFVNLLEV----CKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTD 264 (469)
Q Consensus 193 ~~d~Vih~Aa~~~~~----~~~~~~~~~~~~Nv~~~~~ll~a----a~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~ 264 (469)
++|+||||||..... ...++.+..+++|+.++..++++ +++.+.. +||++||..++.+.
T Consensus 81 ~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g-~iv~isS~~~~~~~------------ 147 (249)
T 1o5i_A 81 EVDILVLNAGGPKAGFFDELTNEDFKEAIDSLFLNMIKIVRNYLPAMKEKGWG-RIVAITSFSVISPI------------ 147 (249)
T ss_dssp CCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE-EEEEECCGGGTSCC------------
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCc-EEEEEcchHhcCCC------------
Confidence 679999999974332 22344567899999998776654 4455654 99999998887532
Q ss_pred CCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeecceecCCCCCCChHHHHHH-HHHcCCceEEEeeCCCCcceEecc
Q 012176 265 QPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPDMAYFFFTK-DILQGKTIDVYKTQDDREVARDFT 340 (469)
Q Consensus 265 ~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~v 340 (469)
.+...|+.+|.+.+.+++.++.+ +|+++++||||.|+++..... ...+.. .+....+ ...+.
T Consensus 148 ~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~--~~~~~~~~~~~~~p------------~~~~~ 213 (249)
T 1o5i_A 148 ENLYTSNSARMALTGFLKTLSFEVAPYGITVNCVAPGWTETERVKEL--LSEEKKKQVESQIP------------MRRMA 213 (249)
T ss_dssp TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTHHHH--SCHHHHHHHHTTST------------TSSCB
T ss_pred CCCchHHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCCCccCccccc--chhhHHHHHHhcCC------------CCCCc
Confidence 34578999999999999998876 489999999999999843210 011112 2222222 13478
Q ss_pred cHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCC
Q 012176 341 YIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTS 374 (469)
Q Consensus 341 ~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~ 374 (469)
+++|+|++++.++..... ...|++|++.++.
T Consensus 214 ~~~dvA~~i~~l~s~~~~---~~tG~~~~vdgG~ 244 (249)
T 1o5i_A 214 KPEEIASVVAFLCSEKAS---YLTGQTIVVDGGL 244 (249)
T ss_dssp CHHHHHHHHHHHHSGGGT---TCCSCEEEESTTC
T ss_pred CHHHHHHHHHHHcCcccc---CCCCCEEEECCCc
Confidence 999999999998865421 2446999999875
|
| >3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=1.9e-21 Score=183.28 Aligned_cols=217 Identities=15% Similarity=0.089 Sum_probs=158.3
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHh--hccCCeEEEEecCCCHHHHHHhhccC--
Q 012176 117 NGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKL--LQKHQVFIVEGDLNDAPLLTKLFDVV-- 192 (469)
Q Consensus 117 ~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~v~~v~~Dl~d~~~l~~~~~~~-- 192 (469)
++|+||||||+|+||++++++|+++|++|++++|+.+. ........ ....++.++.+|++|+++++++++..
T Consensus 1 ~~k~vlITGas~gIG~~ia~~l~~~G~~V~~~~r~~~~----~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~ 76 (235)
T 3l77_A 1 EMKVAVITGASRGIGEAIARALARDGYALALGARSVDR----LEKIAHELMQEQGVEVFYHHLDVSKAESVEEFSKKVLE 76 (235)
T ss_dssp CCCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHH----HHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHCC-HHH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHH----HHHHHHHHHhhcCCeEEEEEeccCCHHHHHHHHHHHHH
Confidence 36799999999999999999999999999999995432 22222211 12457999999999999999998854
Q ss_pred ---CccEEEEcccccChh----hhccChHHHHHHHHHHHHHHHHHHHhc---CCCCeEEEEcCccccCCCCCCCCCCCCC
Q 012176 193 ---PFTHVLHLAAQAGVR----YAMQNPQSYVASNIAGFVNLLEVCKSV---NPQPSIVWASSSSVYGLNTQVPFSESHR 262 (469)
Q Consensus 193 ---~~d~Vih~Aa~~~~~----~~~~~~~~~~~~Nv~~~~~ll~aa~~~---~~~~~~V~~SS~~vyg~~~~~~~~E~~~ 262 (469)
++|+||||||..... ...++.+..+++|+.++.++++++... +. +++|++||...+...
T Consensus 77 ~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~-~~ii~~sS~~~~~~~---------- 145 (235)
T 3l77_A 77 RFGDVDVVVANAGLGYFKRLEELSEEEFHEMIEVNLLGVWRTLKAFLDSLKRTG-GLALVTTSDVSARLI---------- 145 (235)
T ss_dssp HHSSCSEEEECCCCCCCCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEECCGGGSSCC----------
T ss_pred hcCCCCEEEECCccccccCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CcEEEEecchhcccC----------
Confidence 679999999975432 234556789999999999999987542 22 278888876554321
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHH-hCCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceEeccc
Q 012176 263 TDQPASLYAATKKAGEEIAHTYNHI-YGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTY 341 (469)
Q Consensus 263 ~~~p~~~Y~~sK~~~E~~~~~~~~~-~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~ 341 (469)
.....|+.+|.+.+.+++.+..+ .|+++++|+||.|..+...... . ......++.
T Consensus 146 --~~~~~Y~~sKaa~~~~~~~l~~~~~~i~v~~v~PG~v~T~~~~~~~-----------~-----------~~~~~~~~~ 201 (235)
T 3l77_A 146 --PYGGGYVSTKWAARALVRTFQIENPDVRFFELRPGAVDTYFGGSKP-----------G-----------KPKEKGYLK 201 (235)
T ss_dssp --TTCHHHHHHHHHHHHHHHHHHHHCTTSEEEEEEECSBSSSTTTCCS-----------C-----------CCGGGTCBC
T ss_pred --CCcchHHHHHHHHHHHHHHHhhcCCCeEEEEEeCCccccccccccC-----------C-----------cccccCCCC
Confidence 23467999999999999998544 4899999999999876433210 0 111125788
Q ss_pred HHHHHHHHHHHhccCCCCCCCCCceEEEeCCCCc
Q 012176 342 IDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTSP 375 (469)
Q Consensus 342 v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~~ 375 (469)
++|+|++++.++..+.. ...++++...+++.
T Consensus 202 p~dva~~v~~l~~~~~~---~~~~~~~~~~~~~~ 232 (235)
T 3l77_A 202 PDEIAEAVRCLLKLPKD---VRVEELMLRSVYQR 232 (235)
T ss_dssp HHHHHHHHHHHHTSCTT---CCCCEEEECCTTSC
T ss_pred HHHHHHHHHHHHcCCCC---CccceEEEeecccC
Confidence 99999999999987743 23346666555543
|
| >3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=99.88 E-value=4e-22 Score=193.19 Aligned_cols=227 Identities=15% Similarity=0.100 Sum_probs=166.5
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccC--
Q 012176 115 RPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV-- 192 (469)
Q Consensus 115 ~~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~-- 192 (469)
..++|+||||||+|+||++++++|+++|++|++++|+.+ ......... ...+.++.+|++|.++++++++..
T Consensus 27 ~l~~k~vlVTGas~GIG~aia~~l~~~G~~Vi~~~r~~~----~~~~~~~~~--~~~~~~~~~Dl~~~~~v~~~~~~~~~ 100 (281)
T 3ppi_A 27 QFEGASAIVSGGAGGLGEATVRRLHADGLGVVIADLAAE----KGKALADEL--GNRAEFVSTNVTSEDSVLAAIEAANQ 100 (281)
T ss_dssp GGTTEEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH----HHHHHHHHH--CTTEEEEECCTTCHHHHHHHHHHHTT
T ss_pred ccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChH----HHHHHHHHh--CCceEEEEcCCCCHHHHHHHHHHHHH
Confidence 357889999999999999999999999999999999532 122222222 347999999999999999888743
Q ss_pred --CccEEEEcccccCh----------hhhccChHHHHHHHHHHHHHHHHHHHhc---------CCCCeEEEEcCccccCC
Q 012176 193 --PFTHVLHLAAQAGV----------RYAMQNPQSYVASNIAGFVNLLEVCKSV---------NPQPSIVWASSSSVYGL 251 (469)
Q Consensus 193 --~~d~Vih~Aa~~~~----------~~~~~~~~~~~~~Nv~~~~~ll~aa~~~---------~~~~~~V~~SS~~vyg~ 251 (469)
++|+|||||+.... ....++.+..+++|+.++.++++++... +..++||++||...+.+
T Consensus 101 ~~~id~lv~~aag~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~ 180 (281)
T 3ppi_A 101 LGRLRYAVVAHGGFGVAQRIVQRDGSPADMGGFTKTIDLYLNGTYNVARLVAASIAAAEPRENGERGALVLTASIAGYEG 180 (281)
T ss_dssp SSEEEEEEECCCCCCCCCCSBCTTSCBCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTSCCCTTSCCEEEEEECCGGGTSC
T ss_pred hCCCCeEEEccCcccccccccccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcccccCCCeEEEEEecccccCC
Confidence 57999999543221 1222335789999999999999987532 12248999999877643
Q ss_pred CCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEe
Q 012176 252 NTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYK 328 (469)
Q Consensus 252 ~~~~~~~E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~ 328 (469)
. .+...|+.+|.+.+.+++.++.++ |+++++|+||.|..+..... .......+....++
T Consensus 181 ~------------~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~--~~~~~~~~~~~~~~---- 242 (281)
T 3ppi_A 181 Q------------IGQTAYAAAKAGVIGLTIAAARDLSSAGIRVNTIAPGTMKTPIMESV--GEEALAKFAANIPF---- 242 (281)
T ss_dssp C------------TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHTT--CHHHHHHHHHTCCS----
T ss_pred C------------CCCcccHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCcCCchhhhcc--cHHHHHHHHhcCCC----
Confidence 2 345789999999999999998775 89999999999987632211 11233333333222
Q ss_pred eCCCCcceEecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCCccc
Q 012176 329 TQDDREVARDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTSPVP 377 (469)
Q Consensus 329 ~~~~~~~~~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~~vt 377 (469)
...+.+++|+|++++.++.+. ...|+++++.+|..++
T Consensus 243 -------~~~~~~pedvA~~v~~l~s~~-----~~tG~~i~vdGG~~~~ 279 (281)
T 3ppi_A 243 -------PKRLGTPDEFADAAAFLLTNG-----YINGEVMRLDGAQRFT 279 (281)
T ss_dssp -------SSSCBCHHHHHHHHHHHHHCS-----SCCSCEEEESTTCCCC
T ss_pred -------CCCCCCHHHHHHHHHHHHcCC-----CcCCcEEEECCCcccC
Confidence 134788999999999998753 4566999999987654
|
| >1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.88 E-value=2.4e-22 Score=193.91 Aligned_cols=202 Identities=15% Similarity=0.020 Sum_probs=153.5
Q ss_pred CCCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhc-cCCeEEEEecCCCHHHHHHhhccC
Q 012176 114 RRPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQ-KHQVFIVEGDLNDAPLLTKLFDVV 192 (469)
Q Consensus 114 ~~~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~v~~v~~Dl~d~~~l~~~~~~~ 192 (469)
...++|+|+||||+|+||++++++|+++|++|++++|+.. ........... ..++.++.+|++|.++++++++..
T Consensus 27 ~~l~~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~~----~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~ 102 (272)
T 1yb1_A 27 KSVTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKH----GLEETAAKCKGLGAKVHTFVVDCSNREDIYSSAKKV 102 (272)
T ss_dssp CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH----HHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHH
T ss_pred cccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEEcCHH----HHHHHHHHHHhcCCeEEEEEeeCCCHHHHHHHHHHH
Confidence 3467899999999999999999999999999999999542 11211111111 347899999999999998888743
Q ss_pred -----CccEEEEcccccChh----hhccChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEEcCccccCCCCCCCCCC
Q 012176 193 -----PFTHVLHLAAQAGVR----YAMQNPQSYVASNIAGFVNLLEVCK----SVNPQPSIVWASSSSVYGLNTQVPFSE 259 (469)
Q Consensus 193 -----~~d~Vih~Aa~~~~~----~~~~~~~~~~~~Nv~~~~~ll~aa~----~~~~~~~~V~~SS~~vyg~~~~~~~~E 259 (469)
++|+||||||..... ...++.+..+++|+.++.++++++. +.+.. +||++||..++.+.
T Consensus 103 ~~~~g~iD~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~-~iv~isS~~~~~~~------- 174 (272)
T 1yb1_A 103 KAEIGDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNVLAHFWTTKAFLPAMTKNNHG-HIVTVASAAGHVSV------- 174 (272)
T ss_dssp HHHTCCCSEEEECCCCCCCCCCGGGHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCE-EEEEECCCC-CCCH-------
T ss_pred HHHCCCCcEEEECCCcCCCcchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCC-EEEEEechhhcCCC-------
Confidence 679999999974421 2344566889999999888887764 34544 99999998876432
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHHh------CCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCC
Q 012176 260 SHRTDQPASLYAATKKAGEEIAHTYNHIY------GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDR 333 (469)
Q Consensus 260 ~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~------gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 333 (469)
.+...|+.+|.+.|.+++.++.++ |+++++||||.|.++..... .
T Consensus 175 -----~~~~~Y~~sK~a~~~l~~~la~e~~~~~~~gi~v~~v~Pg~v~t~~~~~~------------------------~ 225 (272)
T 1yb1_A 175 -----PFLLAYCSSKFAAVGFHKTLTDELAALQITGVKTTCLCPNFVNTGFIKNP------------------------S 225 (272)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTEEEEEEEETHHHHCSTTCT------------------------H
T ss_pred -----CCchhHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCccccc------------------------c
Confidence 234679999999999999998775 89999999999988753210 0
Q ss_pred cceEecccHHHHHHHHHHHhccC
Q 012176 334 EVARDFTYIDDVVKGCVGATGSG 356 (469)
Q Consensus 334 ~~~~~~v~v~Dva~~~~~~~~~~ 356 (469)
.....+++++|+|++++.++..+
T Consensus 226 ~~~~~~~~~~dva~~i~~~~~~~ 248 (272)
T 1yb1_A 226 TSLGPTLEPEEVVNRLMHGILTE 248 (272)
T ss_dssp HHHCCCCCHHHHHHHHHHHHHTT
T ss_pred ccccCCCCHHHHHHHHHHHHHcC
Confidence 11134678999999999999876
|
| >1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.88 E-value=4.8e-22 Score=192.43 Aligned_cols=213 Identities=15% Similarity=0.081 Sum_probs=150.9
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhc---cCCeEEEEecCCCHHHHHHhhccC
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQ---KHQVFIVEGDLNDAPLLTKLFDVV 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~---~~~v~~v~~Dl~d~~~l~~~~~~~ 192 (469)
.++|+||||||+|+||++++++|+++|++|++++|+.. ........... ...+.++.+|++|+++++++++..
T Consensus 30 l~~k~vlVTGasggIG~~la~~l~~~G~~V~~~~r~~~----~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~ 105 (279)
T 1xg5_A 30 WRDRLALVTGASGGIGAAVARALVQQGLKVVGCARTVG----NIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAI 105 (279)
T ss_dssp GTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHH----HHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHH
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEECChH----HHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHH
Confidence 57799999999999999999999999999999999542 11111111111 135889999999999999888743
Q ss_pred -----CccEEEEcccccChh----hhccChHHHHHHHHHH----HHHHHHHHHhcCC-CCeEEEEcCccccCCCCCCCCC
Q 012176 193 -----PFTHVLHLAAQAGVR----YAMQNPQSYVASNIAG----FVNLLEVCKSVNP-QPSIVWASSSSVYGLNTQVPFS 258 (469)
Q Consensus 193 -----~~d~Vih~Aa~~~~~----~~~~~~~~~~~~Nv~~----~~~ll~aa~~~~~-~~~~V~~SS~~vyg~~~~~~~~ 258 (469)
++|+||||||..... ...++.+..+++|+.+ ++.++.++++.+. .++||++||...+....
T Consensus 106 ~~~~g~iD~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~l~~~~~~~~~~g~iv~isS~~~~~~~~----- 180 (279)
T 1xg5_A 106 RSQHSGVDICINNAGLARPDTLLSGSTSGWKDMFNVNVLALSICTREAYQSMKERNVDDGHIININSMSGHRVLP----- 180 (279)
T ss_dssp HHHHCCCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCSCEEEEECCGGGTSCCS-----
T ss_pred HHhCCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCceEEEEcChhhcccCC-----
Confidence 579999999974322 1334556789999999 6666777777764 24999999988764211
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHHH-----hCCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCC
Q 012176 259 ESHRTDQPASLYAATKKAGEEIAHTYNHI-----YGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDR 333 (469)
Q Consensus 259 E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~-----~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 333 (469)
..+...|+.+|.+.+.+++.++.+ .++++++|+||.|.++... ......+..... .
T Consensus 181 -----~~~~~~Y~~sK~a~~~~~~~la~e~~~~~~~i~v~~v~Pg~v~t~~~~----------~~~~~~~~~~~~----~ 241 (279)
T 1xg5_A 181 -----LSVTHFYSATKYAVTALTEGLRQELREAQTHIRATCISPGVVETQFAF----------KLHDKDPEKAAA----T 241 (279)
T ss_dssp -----CGGGHHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESCBCSSHHH----------HHTTTCHHHHHH----H
T ss_pred -----CCCCchhHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEecCcccchhhh----------hhcccChhHHhh----h
Confidence 134568999999999999988765 3799999999999886310 000000000000 0
Q ss_pred cceEecccHHHHHHHHHHHhccC
Q 012176 334 EVARDFTYIDDVVKGCVGATGSG 356 (469)
Q Consensus 334 ~~~~~~v~v~Dva~~~~~~~~~~ 356 (469)
.....+++++|+|++++.++..+
T Consensus 242 ~~~~~~~~~~dvA~~i~~l~~~~ 264 (279)
T 1xg5_A 242 YEQMKCLKPEDVAEAVIYVLSTP 264 (279)
T ss_dssp HC---CBCHHHHHHHHHHHHHSC
T ss_pred cccccCCCHHHHHHHHHHHhcCC
Confidence 01124688999999999999876
|
| >3gdg_A Probable NADP-dependent mannitol dehydrogenase; rossmann fold, beta-alpha-beta motifs, open twisted sheet, A NADP, oxidoreductase; 2.30A {Cladosporium herbarum} SCOP: c.2.1.0 PDB: 3gdf_A | Back alignment and structure |
|---|
Probab=99.88 E-value=3.3e-21 Score=185.22 Aligned_cols=230 Identities=12% Similarity=-0.016 Sum_probs=168.9
Q ss_pred CCCCEEEEEcCC--ChhHHHHHHHHHHCCCcEEEEeCCCCCC-ChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccC
Q 012176 116 PNGMTVLVTGAA--GFVGSHCSLALKKRGDGVLGLDNFNSYY-DPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV 192 (469)
Q Consensus 116 ~~~~~VlVtGat--G~IG~~l~~~L~~~G~~V~~~~r~~~~~-~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~ 192 (469)
.++|+|+||||+ |+||.+++++|+++|++|++++|..... .......... ...++.++.+|++|.++++++++.+
T Consensus 18 l~~k~vlITGas~~~giG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~Dl~~~~~v~~~~~~~ 95 (267)
T 3gdg_A 18 LKGKVVVVTGASGPKGMGIEAARGCAEMGAAVAITYASRAQGAEENVKELEKT--YGIKAKAYKCQVDSYESCEKLVKDV 95 (267)
T ss_dssp CTTCEEEETTCCSSSSHHHHHHHHHHHTSCEEEECBSSSSSHHHHHHHHHHHH--HCCCEECCBCCTTCHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCChHHHHHHHHHHCCCeEEEEeCCcchhHHHHHHHHHHh--cCCceeEEecCCCCHHHHHHHHHHH
Confidence 678999999999 9999999999999999999999876532 1111111111 1357999999999999999888765
Q ss_pred -----CccEEEEcccccChh----hhccChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEEcCccccCCCCCCCCCC
Q 012176 193 -----PFTHVLHLAAQAGVR----YAMQNPQSYVASNIAGFVNLLEVC----KSVNPQPSIVWASSSSVYGLNTQVPFSE 259 (469)
Q Consensus 193 -----~~d~Vih~Aa~~~~~----~~~~~~~~~~~~Nv~~~~~ll~aa----~~~~~~~~~V~~SS~~vyg~~~~~~~~E 259 (469)
++|+||||||..... ...++.+..+++|+.++.++++++ ++.+.. +||++||...+.....
T Consensus 96 ~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g-~iv~isS~~~~~~~~~----- 169 (267)
T 3gdg_A 96 VADFGQIDAFIANAGATADSGILDGSVEAWNHVVQVDLNGTFHCAKAVGHHFKERGTG-SLVITASMSGHIANFP----- 169 (267)
T ss_dssp HHHTSCCSEEEECCCCCCCSCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCC-EEEEECCGGGTSCCSS-----
T ss_pred HHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHhcchHHHHHHHHHHHHHHHcCCc-eEEEEccccccccCCC-----
Confidence 789999999975432 234556679999999999999987 444543 9999999776532210
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHHhC--CcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceE
Q 012176 260 SHRTDQPASLYAATKKAGEEIAHTYNHIYG--LALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVAR 337 (469)
Q Consensus 260 ~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~g--i~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 337 (469)
.+...|+.+|.+.+.+++.++.+++ ++++.|+||.|..+..... .......+....+ ..
T Consensus 170 -----~~~~~Y~~sK~a~~~~~~~la~e~~~~i~v~~v~PG~v~t~~~~~~--~~~~~~~~~~~~~------------~~ 230 (267)
T 3gdg_A 170 -----QEQTSYNVAKAGCIHMARSLANEWRDFARVNSISPGYIDTGLSDFV--PKETQQLWHSMIP------------MG 230 (267)
T ss_dssp -----SCCHHHHHHHHHHHHHHHHHHHHTTTTCEEEEEEECCEECSCGGGS--CHHHHHHHHTTST------------TS
T ss_pred -----CCCCcchHHHHHHHHHHHHHHHHhccCcEEEEEECCccccchhhhC--CHHHHHHHHhcCC------------CC
Confidence 2457899999999999999998864 8999999999987643321 1223333333322 23
Q ss_pred ecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCCc
Q 012176 338 DFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTSP 375 (469)
Q Consensus 338 ~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~~ 375 (469)
.+.+++|+|++++.++..... ...|+++++.+|..
T Consensus 231 r~~~~~dva~~~~~l~s~~~~---~itG~~i~vdgG~~ 265 (267)
T 3gdg_A 231 RDGLAKELKGAYVYFASDAST---YTTGADLLIDGGYT 265 (267)
T ss_dssp SCEETHHHHHHHHHHHSTTCT---TCCSCEEEESTTGG
T ss_pred CCcCHHHHHhHhheeecCccc---cccCCEEEECCcee
Confidence 466789999999998865432 34569999988753
|
| >3icc_A Putative 3-oxoacyl-(acyl carrier protein) reducta; structural genomics, putative 3-oxoacyl-(acyl carrier protei reductase, oxidoreductase; HET: NAP MES; 1.87A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.6e-21 Score=186.00 Aligned_cols=229 Identities=14% Similarity=0.060 Sum_probs=165.1
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhh-ccCCeEEEEecCCCHHHHHHhhccC--
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLL-QKHQVFIVEGDLNDAPLLTKLFDVV-- 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~v~~v~~Dl~d~~~l~~~~~~~-- 192 (469)
.++|+|+||||+|+||++++++|+++|++|+++++... ........... ....+.++.+|++|.+.++++++..
T Consensus 5 l~~k~vlITGas~gIG~~~a~~l~~~G~~v~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 81 (255)
T 3icc_A 5 LKGKVALVTGASRGIGRAIAKRLANDGALVAIHYGNRK---EEAEETVYEIQSNGGSAFSIGANLESLHGVEALYSSLDN 81 (255)
T ss_dssp TTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCS---HHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCCch---HHHHHHHHHHHhcCCceEEEecCcCCHHHHHHHHHHHHH
Confidence 57899999999999999999999999999998754332 12222222221 2347889999999999988887653
Q ss_pred ---------CccEEEEcccccChh----hhccChHHHHHHHHHHHHHHHHHHHhcC-CCCeEEEEcCccccCCCCCCCCC
Q 012176 193 ---------PFTHVLHLAAQAGVR----YAMQNPQSYVASNIAGFVNLLEVCKSVN-PQPSIVWASSSSVYGLNTQVPFS 258 (469)
Q Consensus 193 ---------~~d~Vih~Aa~~~~~----~~~~~~~~~~~~Nv~~~~~ll~aa~~~~-~~~~~V~~SS~~vyg~~~~~~~~ 258 (469)
++|+||||||..... ...++.+..+++|+.++.++++++...- ..++||++||...+.+.
T Consensus 82 ~~~~~~~~~~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~isS~~~~~~~------ 155 (255)
T 3icc_A 82 ELQNRTGSTKFDILINNAGIGPGAFIEETTEQFFDRMVSVNAKAPFFIIQQALSRLRDNSRIINISSAATRISL------ 155 (255)
T ss_dssp HHHHHHSSSCEEEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEECCGGGTSCC------
T ss_pred HhcccccCCcccEEEECCCCCCCCChhhCCHHHHHHHHhhhchHHHHHHHHHHHhhCCCCEEEEeCChhhccCC------
Confidence 379999999974332 2234456789999999999999987541 12389999998776432
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcc
Q 012176 259 ESHRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREV 335 (469)
Q Consensus 259 E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 335 (469)
.....|+.+|.+.+.+++.++.++ |+++++|+||.|..+..........+........+
T Consensus 156 ------~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~------------ 217 (255)
T 3icc_A 156 ------PDFIAYSMTKGAINTMTFTLAKQLGARGITVNAILPGFVKTDMNAELLSDPMMKQYATTISA------------ 217 (255)
T ss_dssp ------TTBHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCCSSSTTTTTSHHHHHHHHHTST------------
T ss_pred ------CCcchhHHhHHHHHHHHHHHHHHHHhcCeEEEEEEEeeecccchhhhcccHHHHHhhhccCC------------
Confidence 335789999999999999998774 89999999999998754432111222222222222
Q ss_pred eEecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCC
Q 012176 336 ARDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTS 374 (469)
Q Consensus 336 ~~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~ 374 (469)
...+.+++|+|++++.++..... ...|+++++.+|.
T Consensus 218 ~~~~~~~~dva~~~~~l~s~~~~---~~tG~~i~vdgG~ 253 (255)
T 3icc_A 218 FNRLGEVEDIADTAAFLASPDSR---WVTGQLIDVSGGS 253 (255)
T ss_dssp TSSCBCHHHHHHHHHHHHSGGGT---TCCSCEEEESSST
T ss_pred cCCCCCHHHHHHHHHHHhCcccC---CccCCEEEecCCe
Confidence 13467799999999988764422 3456999998875
|
| >1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold, dinucleotide binding oxidoreductase; HET: NAP; 1.75A {Drosophila melanogaster} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.88 E-value=2.5e-21 Score=185.93 Aligned_cols=212 Identities=16% Similarity=0.078 Sum_probs=158.9
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCC---CcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccC
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRG---DGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G---~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~ 192 (469)
.++|+||||||+|+||++++++|+++| ++|++++|+..... .+..... ...++.++.+|++|.++++++++..
T Consensus 19 ~~~k~vlITGasggIG~~la~~L~~~G~~~~~V~~~~r~~~~~~-~~~~l~~---~~~~~~~~~~Dl~~~~~v~~~~~~~ 94 (267)
T 1sny_A 19 SHMNSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAK-ELEDLAK---NHSNIHILEIDLRNFDAYDKLVADI 94 (267)
T ss_dssp -CCSEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEESCTTSCH-HHHHHHH---HCTTEEEEECCTTCGGGHHHHHHHH
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHhcCCCCcEEEEEecChhhhH-HHHHhhc---cCCceEEEEecCCChHHHHHHHHHH
Confidence 677899999999999999999999999 99999999765432 1211111 1347999999999999999888743
Q ss_pred -------CccEEEEcccccC-----hhhhccChHHHHHHHHHHHHHHHHHHHhc----------CC----CCeEEEEcCc
Q 012176 193 -------PFTHVLHLAAQAG-----VRYAMQNPQSYVASNIAGFVNLLEVCKSV----------NP----QPSIVWASSS 246 (469)
Q Consensus 193 -------~~d~Vih~Aa~~~-----~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~----------~~----~~~~V~~SS~ 246 (469)
++|+||||||... .....++.+..+++|+.++.++++++... +. .++||++||.
T Consensus 95 ~~~~g~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iv~isS~ 174 (267)
T 1sny_A 95 EGVTKDQGLNVLFNNAGIAPKSARITAVRSQELLDTLQTNTVVPIMLAKACLPLLKKAAKANESQPMGVGRAAIINMSSI 174 (267)
T ss_dssp HHHHGGGCCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTTTSCSSTTTCEEEEECCG
T ss_pred HHhcCCCCccEEEECCCcCCCccccccCCHHHHHHHHhhhchHHHHHHHHHHHHHhhcccccccccccCCCceEEEEecc
Confidence 5699999999754 12234556678999999999999987543 20 2489999998
Q ss_pred cccCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeecceecCCCCCCChHHHHHHHHHcCCc
Q 012176 247 SVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKT 323 (469)
Q Consensus 247 ~vyg~~~~~~~~E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~ 323 (469)
..+.... ...+...|+.+|.+.|.+++.++.+ +|+++++||||.|..+....
T Consensus 175 ~~~~~~~---------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~---------------- 229 (267)
T 1sny_A 175 LGSIQGN---------TDGGMYAYRTSKSALNAATKSLSVDLYPQRIMCVSLHPGWVKTDMGGS---------------- 229 (267)
T ss_dssp GGCSTTC---------CSCCCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEECCCSBCSTTTCT----------------
T ss_pred cccccCC---------CCCCchHHHHHHHHHHHHHHHHHHHhhcCCcEEEEeCCcceecCCCCC----------------
Confidence 8765331 0124568999999999999999877 58999999999998764321
Q ss_pred eEEEeeCCCCcceEecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCC
Q 012176 324 IDVYKTQDDREVARDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGN 372 (469)
Q Consensus 324 ~~~~~~~~~~~~~~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~ 372 (469)
..++.++|+|+.++.++..... ...|..|++.+
T Consensus 230 -------------~~~~~~~~~a~~~~~~~~~~~~---~~~G~~~~~~g 262 (267)
T 1sny_A 230 -------------SAPLDVPTSTGQIVQTISKLGE---KQNGGFVNYDG 262 (267)
T ss_dssp -------------TCSBCHHHHHHHHHHHHHHCCG---GGTTCEECTTS
T ss_pred -------------CCCCCHHHHHHHHHHHHHhcCc---CCCCcEEccCC
Confidence 0135689999999999876532 23346665544
|
| >1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain dehydrogenase, SDR, xenobiotic, metyrapone, oligomerisation; 1.68A {Comamonas testosteroni} SCOP: c.2.1.2 PDB: 1fk8_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=1.7e-22 Score=192.97 Aligned_cols=224 Identities=11% Similarity=0.007 Sum_probs=153.0
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccC--CccE
Q 012176 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--PFTH 196 (469)
Q Consensus 119 ~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~--~~d~ 196 (469)
|+|+||||+|+||++++++|+++|++|++++|+...... .+.+|++|.++++++++.. ++|+
T Consensus 2 k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~----------------~~~~Dl~~~~~v~~~~~~~~~~id~ 65 (257)
T 1fjh_A 2 SIIVISGCATGIGAATRKVLEAAGHQIVGIDIRDAEVIA----------------DLSTAEGRKQAIADVLAKCSKGMDG 65 (257)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSSSEEC----------------CTTSHHHHHHHHHHHHTTCTTCCSE
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCchhhcc----------------ccccCCCCHHHHHHHHHHhCCCCCE
Confidence 689999999999999999999999999999996542211 1568999999999999865 6799
Q ss_pred EEEcccccChhhhccChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEEcCccccCCCCCCCCCCC-----C------
Q 012176 197 VLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCK----SVNPQPSIVWASSSSVYGLNTQVPFSES-----H------ 261 (469)
Q Consensus 197 Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~----~~~~~~~~V~~SS~~vyg~~~~~~~~E~-----~------ 261 (469)
||||||.... ....+..+++|+.++.++++++. +.+. ++||++||...+......+..++ +
T Consensus 66 lv~~Ag~~~~---~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~-g~iv~isS~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (257)
T 1fjh_A 66 LVLCAGLGPQ---TKVLGNVVSVNYFGATELMDAFLPALKKGHQ-PAAVVISSVASAHLAFDKNPLALALEAGEEAKARA 141 (257)
T ss_dssp EEECCCCCTT---CSSHHHHHHHHTHHHHHHHHHHHHHHHTSSS-CEEEEECCGGGGSSCGGGCTTHHHHHHTCHHHHHH
T ss_pred EEECCCCCCC---cccHHHHHHHhhHHHHHHHHHHHHHHhhcCC-cEEEEECChhhhccccccchhhhhhcccchhhhhh
Confidence 9999997431 24578899999999999999875 3443 49999999888742211111000 0
Q ss_pred -----CCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCC
Q 012176 262 -----RTDQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDR 333 (469)
Q Consensus 262 -----~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 333 (469)
....+...|+.+|.+.|.+++.++.+ +|+++++|+||.|.++...... ............ .
T Consensus 142 ~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~-~~~~~~~~~~~~----------~ 210 (257)
T 1fjh_A 142 IVEHAGEQGGNLAYAGSKNALTVAVRKRAAAWGEAGVRLNTIAPGATETPLLQAGL-QDPRYGESIAKF----------V 210 (257)
T ss_dssp HHHTCCTTHHHHHHHHHHHHHHHHHHHTHHHHHHTTCEEEEEEECC----------------------C----------C
T ss_pred hhhcccCCCCccHHHHHHHHHHHHHHHHHHHHhhcCeEEEEEeeCCCCCccchhhc-cchhHHHHHHhc----------c
Confidence 11124568999999999999998876 4899999999999987533210 000101111000 0
Q ss_pred cceEecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCCcc
Q 012176 334 EVARDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTSPV 376 (469)
Q Consensus 334 ~~~~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~~v 376 (469)
.....+.+++|+|++++.++..+.. ...|++|++.++...
T Consensus 211 ~~~~~~~~~~dvA~~~~~l~~~~~~---~~tG~~~~vdgG~~~ 250 (257)
T 1fjh_A 211 PPMGRRAEPSEMASVIAFLMSPAAS---YVHGAQIVIDGGIDA 250 (257)
T ss_dssp CSTTSCCCTHHHHHHHHHHTSGGGT---TCCSCEEEESTTHHH
T ss_pred cccCCCCCHHHHHHHHHHHhCchhc---CCcCCEEEECCCccc
Confidence 0112478999999999999865421 245699999887543
|
| >3asu_A Short-chain dehydrogenase/reductase SDR; SDR family, rossmann-fold, short-chain dehydrogenase/reducta ALLO-threonine dehydrogenase; 1.90A {Escherichia coli} PDB: 3asv_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=7.5e-21 Score=180.98 Aligned_cols=218 Identities=17% Similarity=0.195 Sum_probs=154.2
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccC-----C
Q 012176 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV-----P 193 (469)
Q Consensus 119 ~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~-----~ 193 (469)
|+++||||+|+||++++++|+++|++|++++|+.+ ........ + ..++.++.+|++|+++++++++.+ +
T Consensus 1 k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~----~~~~~~~~-~-~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~ 74 (248)
T 3asu_A 1 MIVLVTGATAGFGECITRRFIQQGHKVIATGRRQE----RLQELKDE-L-GDNLYIAQLDVRNRAAIEEMLASLPAEWCN 74 (248)
T ss_dssp CEEEETTTTSTTHHHHHHHHHHTTCEEEEEESCHH----HHHHHHHH-H-CTTEEEEECCTTCHHHHHHHHHTSCTTTCC
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHH----HHHHHHHH-h-cCceEEEEcCCCCHHHHHHHHHHHHHhCCC
Confidence 57999999999999999999999999999998532 12221111 1 247899999999999999998754 6
Q ss_pred ccEEEEcccccC-----hhhhccChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEEcCccccCCCCCCCCCCCCCCC
Q 012176 194 FTHVLHLAAQAG-----VRYAMQNPQSYVASNIAGFVNLLEVCK----SVNPQPSIVWASSSSVYGLNTQVPFSESHRTD 264 (469)
Q Consensus 194 ~d~Vih~Aa~~~-----~~~~~~~~~~~~~~Nv~~~~~ll~aa~----~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~ 264 (469)
+|+||||||... .....++++..+++|+.++.++++++. +.+.. +||++||...+.+.
T Consensus 75 iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g-~iv~isS~~~~~~~------------ 141 (248)
T 3asu_A 75 IDILVNNAGLALGMEPAHKASVEDWETMIDTNNKGLVYMTRAVLPGMVERNHG-HIINIGSTAGSWPY------------ 141 (248)
T ss_dssp CCEEEECCCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCC-EEEEECCGGGTSCC------------
T ss_pred CCEEEECCCcCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCc-eEEEEccchhccCC------------
Confidence 899999999742 122344567899999999999998875 34443 99999998766422
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceec-CCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceEecc
Q 012176 265 QPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYG-PWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFT 340 (469)
Q Consensus 265 ~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G-p~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v 340 (469)
.+...|+.+|.+.+.+++.++.++ |+++++|+||.|.| +..... +... ........ ....++
T Consensus 142 ~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~gT~~~~~~-----~~~~--~~~~~~~~-------~~~~~~ 207 (248)
T 3asu_A 142 AGGNVYGATKAFVRQFSLNLRTDLHGTAVRVTDIEPGLVGGTEFSNVR-----FKGD--DGKAEKTY-------QNTVAL 207 (248)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHTTTSCCEEEEEEECSBCC------------------------------------CCB
T ss_pred CCCchHHHHHHHHHHHHHHHHHHhhhcCcEEEEEeccccccCcchhhc-----ccCc--hHHHHHHH-------hccCCC
Confidence 345789999999999999998774 89999999999994 532110 0000 00000000 012346
Q ss_pred cHHHHHHHHHHHhccCCCCCCCCCceEEEeCCC
Q 012176 341 YIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNT 373 (469)
Q Consensus 341 ~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~ 373 (469)
.++|+|++++.++..+.. ..++.+.+...
T Consensus 208 ~p~dvA~~v~~l~s~~~~----~~g~~i~v~~~ 236 (248)
T 3asu_A 208 TPEDVSEAVWWVSTLPAH----VNINTLEMMPV 236 (248)
T ss_dssp CHHHHHHHHHHHHHSCTT----CCCCEEEECCT
T ss_pred CHHHHHHHHHHHhcCCcc----ceeeEEEEccc
Confidence 899999999999876542 34467776554
|
| >4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum} | Back alignment and structure |
|---|
Probab=99.88 E-value=3.3e-22 Score=193.32 Aligned_cols=227 Identities=16% Similarity=0.052 Sum_probs=164.5
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccC---
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~--- 192 (469)
.++|+|+||||+|+||++++++|+++|++|++++|+.+........... ....+.++.+|++|.++++++++..
T Consensus 31 l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~~Dv~~~~~~~~~~~~~~~~ 107 (275)
T 4imr_A 31 LRGRTALVTGSSRGIGAAIAEGLAGAGAHVILHGVKPGSTAAVQQRIIA---SGGTAQELAGDLSEAGAGTDLIERAEAI 107 (275)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSTTTTHHHHHHHHH---TTCCEEEEECCTTSTTHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHh---cCCeEEEEEecCCCHHHHHHHHHHHHHh
Confidence 6789999999999999999999999999999999976543332222211 2457899999999999988888743
Q ss_pred -CccEEEEcccccChh----hhccChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEEcCccccCCCCCCCCCCCCCC
Q 012176 193 -PFTHVLHLAAQAGVR----YAMQNPQSYVASNIAGFVNLLEVCK----SVNPQPSIVWASSSSVYGLNTQVPFSESHRT 263 (469)
Q Consensus 193 -~~d~Vih~Aa~~~~~----~~~~~~~~~~~~Nv~~~~~ll~aa~----~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~ 263 (469)
++|+||||||..... ...++.+..+++|+.++.++++++. +.+. ++||++||...+.+.
T Consensus 108 g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~-g~Iv~isS~~~~~~~----------- 175 (275)
T 4imr_A 108 APVDILVINASAQINATLSALTPNDLAFQLAVNLGSTVDMLQSALPKMVARKW-GRVVSIGSINQLRPK----------- 175 (275)
T ss_dssp SCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-EEEEEECCGGGTSCC-----------
T ss_pred CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCC-cEEEEECCHHhCCCC-----------
Confidence 679999999974322 2344556789999999999999873 3444 399999998776421
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCCCCCh-HHHHHHHHHcCC-ceEEEeeCCCCcceEe
Q 012176 264 DQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMA-YFFFTKDILQGK-TIDVYKTQDDREVARD 338 (469)
Q Consensus 264 ~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~~~~~-~~~~~~~~~~g~-~~~~~~~~~~~~~~~~ 338 (469)
.+...|+.+|.+.+.+++.++.++ |+++++|+||.|..+....... .......+.... ++ ..
T Consensus 176 -~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~p~------------~r 242 (275)
T 4imr_A 176 -SVVTAYAATKAAQHNLIQSQARDFAGDNVLLNTLAPGLVDTDRNADRRAQDPEGWDEYVRTLNWM------------GR 242 (275)
T ss_dssp -TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBCSHHHHHHHHHCHHHHHHHHHHHSTT------------CS
T ss_pred -CCchhhHHHHHHHHHHHHHHHHHhcccCcEEEEEEeccccCcccccccccChHHHHHHHhhcCcc------------CC
Confidence 345679999999999999998875 8999999999998762211000 011111111111 11 22
Q ss_pred cccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCC
Q 012176 339 FTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNT 373 (469)
Q Consensus 339 ~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~ 373 (469)
+..++|+|++++.++..... -..|+++++.+|
T Consensus 243 ~~~pedvA~~v~fL~s~~a~---~itG~~i~vdGG 274 (275)
T 4imr_A 243 AGRPEEMVGAALFLASEACS---FMTGETIFLTGG 274 (275)
T ss_dssp CBCGGGGHHHHHHHHSGGGT---TCCSCEEEESSC
T ss_pred CcCHHHHHHHHHHHcCcccC---CCCCCEEEeCCC
Confidence 45689999999998865422 345699999876
|
| >2qhx_A Pteridine reductase 1; oxidoreductase, short-chain dehydrogenase/reductase, trypanosomatid, pterin salvage, drug resistance; HET: NAP FE1; 2.61A {Leishmania major} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.88 E-value=3.4e-21 Score=190.93 Aligned_cols=226 Identities=13% Similarity=0.005 Sum_probs=165.2
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEe-CCCCCCChhHHHHHHHhh--ccCCeEEEEecCCCHH---------
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLD-NFNSYYDPSLKRARQKLL--QKHQVFIVEGDLNDAP--------- 183 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~-r~~~~~~~~~~~~~~~~~--~~~~v~~v~~Dl~d~~--------- 183 (469)
.++|+||||||+|+||++++++|+++|++|++++ |+.+ .......... ...++.++.+|++|.+
T Consensus 44 l~~k~~lVTGas~GIG~aia~~La~~G~~Vv~~~~r~~~----~~~~~~~~l~~~~~~~~~~~~~Dl~d~~~~~~~~~~~ 119 (328)
T 2qhx_A 44 PTVPVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAA----EANALSATLNARRPNSAITVQADLSNVATAPVSGADG 119 (328)
T ss_dssp -CCCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHH----HHHHHHHHHHHHSTTCEEEEECCCSSSCBCC------
T ss_pred cCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCCHH----HHHHHHHHHHhhcCCeEEEEEeeCCCchhcccccccc
Confidence 5678999999999999999999999999999999 7432 1222222211 1347899999999999
Q ss_pred --------HHHHhhccC-----CccEEEEcccccChh----hh--------------ccChHHHHHHHHHHHHHHHHHHH
Q 012176 184 --------LLTKLFDVV-----PFTHVLHLAAQAGVR----YA--------------MQNPQSYVASNIAGFVNLLEVCK 232 (469)
Q Consensus 184 --------~l~~~~~~~-----~~d~Vih~Aa~~~~~----~~--------------~~~~~~~~~~Nv~~~~~ll~aa~ 232 (469)
+++++++.+ ++|+||||||..... .. .++.+..+++|+.++..+++++.
T Consensus 120 ~~~~~~~~~v~~~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~ 199 (328)
T 2qhx_A 120 SAPVTLFTRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRNDEDGHEPCVGDREAMETATADLFGSNAIAPYFLIKAFA 199 (328)
T ss_dssp -CCBCHHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCSCC-------------CHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHHHHhcCCCCEEEECCCCCCCCChhhcCccccccccccccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888754 679999999974321 12 34456789999999999999875
Q ss_pred h----cCC-----CCeEEEEcCccccCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecce
Q 012176 233 S----VNP-----QPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTV 300 (469)
Q Consensus 233 ~----~~~-----~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v 300 (469)
. .+. .++||++||...+.+. .+...|+.+|.+.+.+++.++.++ |+++++|+||.|
T Consensus 200 ~~m~~~~~~~~~~~g~IV~isS~~~~~~~------------~~~~~Y~asKaal~~l~~~la~el~~~gIrvn~v~PG~v 267 (328)
T 2qhx_A 200 HRVAGTPAKHRGTNYSIINMVDAMTNQPL------------LGYTIYTMAKGALEGLTRSAALELAPLQIRVNGVGPGLS 267 (328)
T ss_dssp HHHHHSCGGGSCSCEEEEEECCTTTTSCC------------TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSB
T ss_pred HHHHhcCCcCCCCCcEEEEECchhhccCC------------CCcHHHHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCcc
Confidence 3 230 2499999998766422 345789999999999999998775 899999999999
Q ss_pred ecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceEecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCCc
Q 012176 301 YGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTSP 375 (469)
Q Consensus 301 ~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~~ 375 (469)
.++. .. . ......+....++. ..+..++|+|++++.++..... ...|+++++.++..
T Consensus 268 ~T~~-~~--~-~~~~~~~~~~~p~~-----------~r~~~pedvA~~v~~l~s~~~~---~itG~~i~vdGG~~ 324 (328)
T 2qhx_A 268 VLVD-DM--P-PAVWEGHRSKVPLY-----------QRDSSAAEVSDVVIFLCSSKAK---YITGTCVKVDGGYS 324 (328)
T ss_dssp SCCC-CS--C-HHHHHHHHTTCTTT-----------TSCBCHHHHHHHHHHHHSGGGT---TCCSCEEEESTTGG
T ss_pred cCCc-cc--c-HHHHHHHHhhCCCC-----------CCCCCHHHHHHHHHHHhCcccc---CccCcEEEECCCcc
Confidence 9986 21 1 23333343332221 0356799999999999864321 34569999988754
|
| >1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; HET: MES; 1.65A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.88 E-value=5.7e-22 Score=187.15 Aligned_cols=209 Identities=13% Similarity=0.117 Sum_probs=156.2
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhcc-----
Q 012176 117 NGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDV----- 191 (469)
Q Consensus 117 ~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~----- 191 (469)
++|+||||||+|+||++++++|+++|++|++++|+.+... ....++.+|++|+++++++++.
T Consensus 2 ~~k~vlITGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~-------------~~~~~~~~D~~~~~~~~~~~~~~~~~~ 68 (236)
T 1ooe_A 2 SSGKVIVYGGKGALGSAILEFFKKNGYTVLNIDLSANDQA-------------DSNILVDGNKNWTEQEQSILEQTASSL 68 (236)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCCTTS-------------SEEEECCTTSCHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEecCccccc-------------cccEEEeCCCCCHHHHHHHHHHHHHHh
Confidence 4679999999999999999999999999999999765321 1356788999999998888763
Q ss_pred --CCccEEEEcccccC-----hhhhccChHHHHHHHHHHHHHHHHHHHhcCC-CCeEEEEcCccccCCCCCCCCCCCCCC
Q 012176 192 --VPFTHVLHLAAQAG-----VRYAMQNPQSYVASNIAGFVNLLEVCKSVNP-QPSIVWASSSSVYGLNTQVPFSESHRT 263 (469)
Q Consensus 192 --~~~d~Vih~Aa~~~-----~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~-~~~~V~~SS~~vyg~~~~~~~~E~~~~ 263 (469)
-++|+||||||... .....++.+..+++|+.++.++++++...-. .++||++||...+.+.
T Consensus 69 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~~----------- 137 (236)
T 1ooe_A 69 QGSQVDGVFCVAGGWAGGSASSKDFVKNADLMIKQSVWSSAIAAKLATTHLKPGGLLQLTGAAAAMGPT----------- 137 (236)
T ss_dssp TTCCEEEEEECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGGSCC-----------
T ss_pred CCCCCCEEEECCcccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEECchhhccCC-----------
Confidence 26799999999643 2233455678899999999999998876421 2489999998776421
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHhC-----CcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceEe
Q 012176 264 DQPASLYAATKKAGEEIAHTYNHIYG-----LALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARD 338 (469)
Q Consensus 264 ~~p~~~Y~~sK~~~E~~~~~~~~~~g-----i~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 338 (469)
.+...|+.+|.+.+.+++.++.+++ +++++||||.|.++. ........ ....
T Consensus 138 -~~~~~Y~~sK~a~~~~~~~la~e~~~~~~gi~v~~v~Pg~v~t~~----------~~~~~~~~------------~~~~ 194 (236)
T 1ooe_A 138 -PSMIGYGMAKAAVHHLTSSLAAKDSGLPDNSAVLTIMPVTLDTPM----------NRKWMPNA------------DHSS 194 (236)
T ss_dssp -TTBHHHHHHHHHHHHHHHHHHSTTSSCCTTCEEEEEEESCBCCHH----------HHHHSTTC------------CGGG
T ss_pred -CCcHHHHHHHHHHHHHHHHHHHHhcccCCCeEEEEEecCcccCcc----------hhhcCCCc------------cccc
Confidence 3457899999999999999987654 999999999998861 11111110 1123
Q ss_pred cccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCC
Q 012176 339 FTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTS 374 (469)
Q Consensus 339 ~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~ 374 (469)
++..+|+|++++.++..+.. ....|+++++.++.
T Consensus 195 ~~~~~dvA~~i~~~l~s~~~--~~~~G~~~~v~gg~ 228 (236)
T 1ooe_A 195 WTPLSFISEHLLKWTTETSS--RPSSGALLKITTEN 228 (236)
T ss_dssp CBCHHHHHHHHHHHHHCGGG--CCCTTCEEEEEEET
T ss_pred cCCHHHHHHHHHHHHcCCCc--ccccccEEEEecCC
Confidence 56789999999977643311 13456888887654
|
| >3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.88 E-value=1.6e-21 Score=184.16 Aligned_cols=199 Identities=18% Similarity=0.116 Sum_probs=148.3
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccC----
Q 012176 117 NGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV---- 192 (469)
Q Consensus 117 ~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~---- 192 (469)
++|+||||||+|+||++++++|+++|++|++++|+.+ ......... . .++.++.+|++|+++++++++..
T Consensus 2 s~k~vlVTGas~GIG~a~a~~l~~~G~~V~~~~r~~~----~~~~~~~~~-~-~~~~~~~~D~~~~~~v~~~~~~~~~~~ 75 (235)
T 3l6e_A 2 SLGHIIVTGAGSGLGRALTIGLVERGHQVSMMGRRYQ----RLQQQELLL-G-NAVIGIVADLAHHEDVDVAFAAAVEWG 75 (235)
T ss_dssp -CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHH----HHHHHHHHH-G-GGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHH----HHHHHHHHh-c-CCceEEECCCCCHHHHHHHHHHHHHhc
Confidence 4689999999999999999999999999999999543 222222222 2 26999999999999999888754
Q ss_pred -CccEEEEcccccChh----hhccChHHHHHHHHHHHHHHHHHHHhcC--CCCeEEEEcCccccCCCCCCCCCCCCCCCC
Q 012176 193 -PFTHVLHLAAQAGVR----YAMQNPQSYVASNIAGFVNLLEVCKSVN--PQPSIVWASSSSVYGLNTQVPFSESHRTDQ 265 (469)
Q Consensus 193 -~~d~Vih~Aa~~~~~----~~~~~~~~~~~~Nv~~~~~ll~aa~~~~--~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~ 265 (469)
++|+||||||..... ...++++..+++|+.++..+++++...- ...+||++||...+.+. .
T Consensus 76 g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~iv~isS~~~~~~~------------~ 143 (235)
T 3l6e_A 76 GLPELVLHCAGTGEFGPVGVYTAEQIRRVMESNLVSTILVAQQTVRLIGERGGVLANVLSSAAQVGK------------A 143 (235)
T ss_dssp CSCSEEEEECCCC------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEECCEECCSSC------------S
T ss_pred CCCcEEEECCCCCCCCChHhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCEEEEEeCHHhcCCC------------C
Confidence 679999999974331 2345567899999999999999875321 11289999997765422 2
Q ss_pred CCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceEecccH
Q 012176 266 PASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYI 342 (469)
Q Consensus 266 p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v 342 (469)
....|+.+|.+.+.+++.++.++ |+++++|+||.|..+...... . .....+..+
T Consensus 144 ~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~-----------~------------~~~~~~~~p 200 (235)
T 3l6e_A 144 NESLYCASKWGMRGFLESLRAELKDSPLRLVNLYPSGIRSEFWDNTD-----------H------------VDPSGFMTP 200 (235)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHTTTSSEEEEEEEEEEECCCC----------------------------------CBCH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHhhccCCEEEEEeCCCccCcchhccC-----------C------------CCCcCCCCH
Confidence 34689999999999999999874 799999999999776322100 0 001247889
Q ss_pred HHHHHHHHHHhccC
Q 012176 343 DDVVKGCVGATGSG 356 (469)
Q Consensus 343 ~Dva~~~~~~~~~~ 356 (469)
+|+|++++.++.++
T Consensus 201 edvA~~v~~l~~~~ 214 (235)
T 3l6e_A 201 EDAAAYMLDALEAR 214 (235)
T ss_dssp HHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHhCC
Confidence 99999999998765
|
| >3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.87 E-value=3.1e-21 Score=185.68 Aligned_cols=227 Identities=15% Similarity=0.087 Sum_probs=160.1
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhh-ccCCeEEEEecCCCHHHHHHhhccC--
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLL-QKHQVFIVEGDLNDAPLLTKLFDVV-- 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~v~~v~~Dl~d~~~l~~~~~~~-- 192 (469)
.++|++|||||+|+||++++++|+++|++|++.++.... .......... ...++.++.+|++|+++++++++.+
T Consensus 25 ~~~k~~lVTGas~GIG~aia~~la~~G~~Vv~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~ 101 (267)
T 3u5t_A 25 ETNKVAIVTGASRGIGAAIAARLASDGFTVVINYAGKAA---AAEEVAGKIEAAGGKALTAQADVSDPAAVRRLFATAEE 101 (267)
T ss_dssp --CCEEEEESCSSHHHHHHHHHHHHHTCEEEEEESSCSH---HHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEcCCCHH---HHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHH
Confidence 467899999999999999999999999999998654431 1222222111 2347899999999999999988754
Q ss_pred ---CccEEEEcccccChh----hhccChHHHHHHHHHHHHHHHHHHHhcC-CCCeEEEEcCccccCCCCCCCCCCCCCCC
Q 012176 193 ---PFTHVLHLAAQAGVR----YAMQNPQSYVASNIAGFVNLLEVCKSVN-PQPSIVWASSSSVYGLNTQVPFSESHRTD 264 (469)
Q Consensus 193 ---~~d~Vih~Aa~~~~~----~~~~~~~~~~~~Nv~~~~~ll~aa~~~~-~~~~~V~~SS~~vyg~~~~~~~~E~~~~~ 264 (469)
++|+||||||..... ...++.+..+++|+.++.++++++...- ..++||++||...+...
T Consensus 102 ~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~isS~~~~~~~------------ 169 (267)
T 3u5t_A 102 AFGGVDVLVNNAGIMPLTTIAETGDAVFDRVIAVNLKGTFNTLREAAQRLRVGGRIINMSTSQVGLLH------------ 169 (267)
T ss_dssp HHSCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCTHHHHCC------------
T ss_pred HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCeEEEEeChhhccCC------------
Confidence 679999999975432 2233456788999999999999876531 12489999997765422
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceEeccc
Q 012176 265 QPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTY 341 (469)
Q Consensus 265 ~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~ 341 (469)
.....|+.+|.+.+.+++.++.++ |+++++|+||.|..+..... ........+....+ ...+..
T Consensus 170 ~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~-~~~~~~~~~~~~~p------------~~r~~~ 236 (267)
T 3u5t_A 170 PSYGIYAAAKAGVEAMTHVLSKELRGRDITVNAVAPGPTATDLFLEG-KSDEVRDRFAKLAP------------LERLGT 236 (267)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHTTTSCCEEEEEEECCBC------------CHHHHHTSST------------TCSCBC
T ss_pred CCchHHHHHHHHHHHHHHHHHHHhhhhCCEEEEEEECCCcCcccccc-CCHHHHHHHHhcCC------------CCCCcC
Confidence 345689999999999999999885 79999999999988743211 00112222222222 234678
Q ss_pred HHHHHHHHHHHhccCCCCCCCCCceEEEeCCC
Q 012176 342 IDDVVKGCVGATGSGGKKRGPAQLRVYNLGNT 373 (469)
Q Consensus 342 v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~ 373 (469)
++|+|++++.++..... -..|+++++.+|
T Consensus 237 pedvA~~v~~L~s~~~~---~itG~~i~vdGG 265 (267)
T 3u5t_A 237 PQDIAGAVAFLAGPDGA---WVNGQVLRANGG 265 (267)
T ss_dssp HHHHHHHHHHHHSTTTT---TCCSEEEEESSS
T ss_pred HHHHHHHHHHHhCcccc---CccCCEEEeCCC
Confidence 99999999998865432 345699999876
|
| >1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=8.8e-22 Score=189.32 Aligned_cols=220 Identities=15% Similarity=0.004 Sum_probs=158.3
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHH-CCCcEEEEeCCCCCCChhHHHHHHHhhc-cCCeEEEEecCCCHHHHHHhhccC-
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKK-RGDGVLGLDNFNSYYDPSLKRARQKLLQ-KHQVFIVEGDLNDAPLLTKLFDVV- 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~-~G~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~v~~v~~Dl~d~~~l~~~~~~~- 192 (469)
.++|+|+||||+|+||++++++|++ +|++|++++|..+ ........... ..++.++.+|++|.++++++++..
T Consensus 2 ~~~k~vlITGasggIG~~~a~~L~~~~g~~V~~~~r~~~----~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~ 77 (276)
T 1wma_A 2 SGIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVT----RGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLR 77 (276)
T ss_dssp CCCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHH----HHHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHhcCCeEEEEeCChH----HHHHHHHHHHhcCCeeEEEECCCCCHHHHHHHHHHHH
Confidence 4578999999999999999999999 9999999999532 11111112111 347899999999999999888744
Q ss_pred ----CccEEEEcccccChhhh----ccChHHHHHHHHHHHHHHHHHHHhcCC-CCeEEEEcCccccCCC-C---------
Q 012176 193 ----PFTHVLHLAAQAGVRYA----MQNPQSYVASNIAGFVNLLEVCKSVNP-QPSIVWASSSSVYGLN-T--------- 253 (469)
Q Consensus 193 ----~~d~Vih~Aa~~~~~~~----~~~~~~~~~~Nv~~~~~ll~aa~~~~~-~~~~V~~SS~~vyg~~-~--------- 253 (469)
++|+||||||....... .++.+..+++|+.++.++++++..... .++||++||..++... .
T Consensus 78 ~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~~sS~~~~~~~~~~~~~~~~~~ 157 (276)
T 1wma_A 78 KEYGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVSSIMSVRALKSCSPELQQKF 157 (276)
T ss_dssp HHHSSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCHHHHHHHHTSCHHHHHHH
T ss_pred HhcCCCCEEEECCcccccCCCccccHHHHHhhhheeeeeHHHHHHHHHHhhCCCCEEEEECChhhhcccccCChhHHhhc
Confidence 67999999997543221 244567899999999999999876532 2389999998766321 0
Q ss_pred -CCCCCCCC------------------CCCCCCChHHHHHHHHHHHHHHHHHH-------hCCcEEEEeecceecCCCCC
Q 012176 254 -QVPFSESH------------------RTDQPASLYAATKKAGEEIAHTYNHI-------YGLALTGLRFFTVYGPWGRP 307 (469)
Q Consensus 254 -~~~~~E~~------------------~~~~p~~~Y~~sK~~~E~~~~~~~~~-------~gi~~~ilRp~~v~Gp~~~~ 307 (469)
..+++|++ ....|.+.|+.+|.+.|.+++.++.+ .|+++++|+||.|.++....
T Consensus 158 ~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~~~~~i~v~~v~PG~v~t~~~~~ 237 (276)
T 1wma_A 158 RSETITEEELVGLMNKFVEDTKKGVHQKEGWPSSAYGVTKIGVTVLSRIHARKLSEQRKGDKILLNACCPGWVRTDMAGP 237 (276)
T ss_dssp HCSSCCHHHHHHHHHHHHHHHHTTCTTTTTCCSCHHHHHHHHHHHHHHHHHHHHHHHCTTSCCEEEEEECCSBCSTTTCT
T ss_pred cccccchhhhhhhhhhhhhhhcccccccCCCccchhHHHHHHHHHHHHHHHHHhhcccCCCceEEEEecCCccccCcCCc
Confidence 01222221 01124588999999999999988876 48999999999998874331
Q ss_pred CChHHHHHHHHHcCCceEEEeeCCCCcceEecccHHHHHHHHHHHhccCCCCCCCCCceEEE
Q 012176 308 DMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYN 369 (469)
Q Consensus 308 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyn 369 (469)
..+.+++|+|++++.++..+.. .....|++|+
T Consensus 238 -----------------------------~~~~~~~~~a~~~~~l~~~~~~-~~~~~G~~~~ 269 (276)
T 1wma_A 238 -----------------------------KATKSPEEGAETPVYLALLPPD-AEGPHGQFVS 269 (276)
T ss_dssp -----------------------------TCSBCHHHHTHHHHHHHSCCTT-CCCCCSCEEE
T ss_pred -----------------------------cccCChhHhhhhHhhhhcCccc-ccccCceEec
Confidence 1257899999999999875521 0123456665
|
| >3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.3e-21 Score=186.53 Aligned_cols=203 Identities=14% Similarity=0.092 Sum_probs=150.5
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhh----ccCCeEEEEecCCCHHHHHHhhcc
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLL----QKHQVFIVEGDLNDAPLLTKLFDV 191 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~----~~~~v~~v~~Dl~d~~~l~~~~~~ 191 (469)
.++|++|||||+|+||.+++++|+++|++|++++|+.+. ......... ...++.++.+|++|.++++++++.
T Consensus 5 ~~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~----~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~ 80 (250)
T 3nyw_A 5 KQKGLAIITGASQGIGAVIAAGLATDGYRVVLIARSKQN----LEKVHDEIMRSNKHVQEPIVLPLDITDCTKADTEIKD 80 (250)
T ss_dssp CCCCEEEEESTTSHHHHHHHHHHHHHTCEEEEEESCHHH----HHHHHHHHHHHCTTSCCCEEEECCTTCHHHHHHHHHH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHH----HHHHHHHHHHhccccCcceEEeccCCCHHHHHHHHHH
Confidence 567899999999999999999999999999999995432 222222211 125789999999999999988875
Q ss_pred C-----CccEEEEcccccCh---hhhccChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEEcCccccCCCCCCCCCC
Q 012176 192 V-----PFTHVLHLAAQAGV---RYAMQNPQSYVASNIAGFVNLLEVCK----SVNPQPSIVWASSSSVYGLNTQVPFSE 259 (469)
Q Consensus 192 ~-----~~d~Vih~Aa~~~~---~~~~~~~~~~~~~Nv~~~~~ll~aa~----~~~~~~~~V~~SS~~vyg~~~~~~~~E 259 (469)
. ++|+||||||.... ....++++..+++|+.++..+++++. +.+.. +||++||...+.+.
T Consensus 81 ~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g-~iv~isS~~~~~~~------- 152 (250)
T 3nyw_A 81 IHQKYGAVDILVNAAAMFMDGSLSEPVDNFRKIMEINVIAQYGILKTVTEIMKVQKNG-YIFNVASRAAKYGF------- 152 (250)
T ss_dssp HHHHHCCEEEEEECCCCCCCCCCSCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE-EEEEECC--------------
T ss_pred HHHhcCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCe-EEEEEccHHhcCCC-------
Confidence 4 68999999997432 23345566899999999999999873 34443 99999997655321
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcce
Q 012176 260 SHRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVA 336 (469)
Q Consensus 260 ~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 336 (469)
.+...|+.+|.+.+.+++.++.++ |+++++|+||.|..+ +.+... .. ...
T Consensus 153 -----~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~----------~~~~~~--~~----------~~~ 205 (250)
T 3nyw_A 153 -----ADGGIYGSTKFALLGLAESLYRELAPLGIRVTTLCPGWVNTD----------MAKKAG--TP----------FKD 205 (250)
T ss_dssp -----CCTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBCSH----------HHHHTT--CC----------SCG
T ss_pred -----CCCcchHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCcccCc----------hhhhcC--CC----------ccc
Confidence 346789999999999999998775 899999999999764 111111 11 112
Q ss_pred EecccHHHHHHHHHHHhccCC
Q 012176 337 RDFTYIDDVVKGCVGATGSGG 357 (469)
Q Consensus 337 ~~~v~v~Dva~~~~~~~~~~~ 357 (469)
..+++++|+|++++.++..+.
T Consensus 206 ~~~~~p~dva~~v~~l~s~~~ 226 (250)
T 3nyw_A 206 EEMIQPDDLLNTIRCLLNLSE 226 (250)
T ss_dssp GGSBCHHHHHHHHHHHHTSCT
T ss_pred ccCCCHHHHHHHHHHHHcCCC
Confidence 347899999999999987663
|
| >1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.87 E-value=1.9e-21 Score=186.57 Aligned_cols=226 Identities=15% Similarity=0.114 Sum_probs=159.4
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhc-cCCeEEEEecCCCHHHHHHhhccC--
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQ-KHQVFIVEGDLNDAPLLTKLFDVV-- 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~v~~v~~Dl~d~~~l~~~~~~~-- 192 (469)
.++|+|+||||+|+||++++++|+++|++|++++|+.+ ........... ..++.++.+|++|+++++++++.+
T Consensus 5 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~----~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 80 (262)
T 1zem_A 5 FNGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNRE----ALEKAEASVREKGVEARSYVCDVTSEEAVIGTVDSVVR 80 (262)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH----HHHHHHHHHHTTTSCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHH----HHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHH
Confidence 56789999999999999999999999999999998542 12222222211 346889999999999998888754
Q ss_pred ---CccEEEEccccc-Ch----hhhccChHHHHHHHHHHHHHHHHHHHhc----CCCCeEEEEcCccccCCCCCCCCCCC
Q 012176 193 ---PFTHVLHLAAQA-GV----RYAMQNPQSYVASNIAGFVNLLEVCKSV----NPQPSIVWASSSSVYGLNTQVPFSES 260 (469)
Q Consensus 193 ---~~d~Vih~Aa~~-~~----~~~~~~~~~~~~~Nv~~~~~ll~aa~~~----~~~~~~V~~SS~~vyg~~~~~~~~E~ 260 (469)
++|+||||||.. .. ....++++..+++|+.++.++++++... +. ++||++||...+.+.
T Consensus 81 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~-g~iv~isS~~~~~~~-------- 151 (262)
T 1zem_A 81 DFGKIDFLFNNAGYQGAFAPVQDYPSDDFARVLTINVTGAFHVLKAVSRQMITQNY-GRIVNTASMAGVKGP-------- 151 (262)
T ss_dssp HHSCCCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-EEEEEECCHHHHSCC--------
T ss_pred HhCCCCEEEECCCCCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCC-cEEEEEcchhhccCC--------
Confidence 679999999974 21 2234456688999999999999987543 43 399999998766432
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCCC-------------CChHHH-HHHHHHcCCc
Q 012176 261 HRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRP-------------DMAYFF-FTKDILQGKT 323 (469)
Q Consensus 261 ~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~~-------------~~~~~~-~~~~~~~g~~ 323 (469)
.....|+.+|.+.+.+++.++.++ |+++++|+||.|..+.... ...... +...+....|
T Consensus 152 ----~~~~~Y~asK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 227 (262)
T 1zem_A 152 ----PNMAAYGTSKGAIIALTETAALDLAPYNIRVNAISPGYMGPGFMWERQVELQAKVGSQYFSTDPKVVAQQMIGSVP 227 (262)
T ss_dssp ----TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSSHHHHHHHHHHHHHTCTTSCSSHHHHHHHHHHTST
T ss_pred ----CCCchHHHHHHHHHHHHHHHHHHHHhhCeEEEEEecCCcCcchhhhhccchhhhccccccccCHHHHHHHHHhcCC
Confidence 234689999999999999988664 8999999999987752110 000001 1111211111
Q ss_pred eEEEeeCCCCcceEecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCC
Q 012176 324 IDVYKTQDDREVARDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNT 373 (469)
Q Consensus 324 ~~~~~~~~~~~~~~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~ 373 (469)
+ ..+..++|+|++++.++..... -..|+++.+.+|
T Consensus 228 ~------------~r~~~p~dvA~~v~~l~s~~~~---~itG~~i~vdGG 262 (262)
T 1zem_A 228 M------------RRYGDINEIPGVVAFLLGDDSS---FMTGVNLPIAGG 262 (262)
T ss_dssp T------------SSCBCGGGSHHHHHHHHSGGGT---TCCSCEEEESCC
T ss_pred C------------CCCcCHHHHHHHHHHHcCchhc---CcCCcEEecCCC
Confidence 1 2356789999999988865321 234588887654
|
| >1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1dir_A* 1hdr_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.7e-21 Score=184.53 Aligned_cols=209 Identities=14% Similarity=0.081 Sum_probs=157.1
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhcc----
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDV---- 191 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~---- 191 (469)
.++|+|+||||+|+||++++++|+++|++|++++|+..... ....++.+|++|+++++++++.
T Consensus 5 ~~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~-------------~~~~~~~~D~~~~~~v~~~~~~~~~~ 71 (241)
T 1dhr_A 5 GEARRVLVYGGRGALGSRCVQAFRARNWWVASIDVVENEEA-------------SASVIVKMTDSFTEQADQVTAEVGKL 71 (241)
T ss_dssp -CCCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSCCTTS-------------SEEEECCCCSCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCChhhcc-------------CCcEEEEcCCCCHHHHHHHHHHHHHH
Confidence 45789999999999999999999999999999999765321 1357788999999999888874
Q ss_pred ---CCccEEEEcccccC-----hhhhccChHHHHHHHHHHHHHHHHHHHhcCC-CCeEEEEcCccccCCCCCCCCCCCCC
Q 012176 192 ---VPFTHVLHLAAQAG-----VRYAMQNPQSYVASNIAGFVNLLEVCKSVNP-QPSIVWASSSSVYGLNTQVPFSESHR 262 (469)
Q Consensus 192 ---~~~d~Vih~Aa~~~-----~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~-~~~~V~~SS~~vyg~~~~~~~~E~~~ 262 (469)
-++|+||||||... .....++.+..+++|+.++..+++++...-. .++||++||...+.+.
T Consensus 72 ~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~---------- 141 (241)
T 1dhr_A 72 LGDQKVDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSHLATKHLKEGGLLTLAGAKAALDGT---------- 141 (241)
T ss_dssp HTTCCEEEEEECCCCCCCBCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGGSCC----------
T ss_pred hCCCCCCEEEEcccccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHhhccCCEEEEECCHHHccCC----------
Confidence 26799999999743 2223455677899999999999998875411 2489999998776432
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHh-----CCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceE
Q 012176 263 TDQPASLYAATKKAGEEIAHTYNHIY-----GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVAR 337 (469)
Q Consensus 263 ~~~p~~~Y~~sK~~~E~~~~~~~~~~-----gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 337 (469)
.+...|+.+|.+.+.+++.++.++ |+++++|+||.|-.+ +........ ...
T Consensus 142 --~~~~~Y~asK~a~~~~~~~la~e~~~~~~gi~v~~v~PG~v~T~----------~~~~~~~~~------------~~~ 197 (241)
T 1dhr_A 142 --PGMIGYGMAKGAVHQLCQSLAGKNSGMPSGAAAIAVLPVTLDTP----------MNRKSMPEA------------DFS 197 (241)
T ss_dssp --TTBHHHHHHHHHHHHHHHHHTSTTSSCCTTCEEEEEEESCEECH----------HHHHHSTTS------------CGG
T ss_pred --CCchHHHHHHHHHHHHHHHHHHHhccCCCCeEEEEEecCcccCc----------cccccCcch------------hhc
Confidence 345689999999999999998764 599999999998775 111111111 112
Q ss_pred ecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCC
Q 012176 338 DFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTS 374 (469)
Q Consensus 338 ~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~ 374 (469)
.++..+|+|++++.++..... ...|+++++.++.
T Consensus 198 ~~~~~~~vA~~v~~l~~~~~~---~~~G~~~~v~g~~ 231 (241)
T 1dhr_A 198 SWTPLEFLVETFHDWITGNKR---PNSGSLIQVVTTD 231 (241)
T ss_dssp GSEEHHHHHHHHHHHHTTTTC---CCTTCEEEEEEET
T ss_pred cCCCHHHHHHHHHHHhcCCCc---CccceEEEEeCCC
Confidence 356789999999998865432 3456888887644
|
| >2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.87 E-value=5.3e-21 Score=184.57 Aligned_cols=221 Identities=16% Similarity=0.144 Sum_probs=153.5
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccC-----C
Q 012176 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV-----P 193 (469)
Q Consensus 119 ~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~-----~ 193 (469)
|+||||||+|+||++++++|+++|++|++++|+.+ .............++.++.+|++|+++++++++.+ +
T Consensus 22 k~vlVTGas~gIG~aia~~La~~G~~V~~~~r~~~----~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~ 97 (272)
T 2nwq_A 22 STLFITGATSGFGEACARRFAEAGWSLVLTGRREE----RLQALAGELSAKTRVLPLTLDVRDRAAMSAAVDNLPEEFAT 97 (272)
T ss_dssp CEEEESSTTTSSHHHHHHHHHHTTCEEEEEESCHH----HHHHHHHHHTTTSCEEEEECCTTCHHHHHHHHHTCCGGGSS
T ss_pred cEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH----HHHHHHHHhhcCCcEEEEEcCCCCHHHHHHHHHHHHHHhCC
Confidence 89999999999999999999999999999999532 22222222211247899999999999999999875 6
Q ss_pred ccEEEEcccccCh-----hhhccChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEEcCccccCCCCCCCCCCCCCCC
Q 012176 194 FTHVLHLAAQAGV-----RYAMQNPQSYVASNIAGFVNLLEVCK----SVNPQPSIVWASSSSVYGLNTQVPFSESHRTD 264 (469)
Q Consensus 194 ~d~Vih~Aa~~~~-----~~~~~~~~~~~~~Nv~~~~~ll~aa~----~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~ 264 (469)
+|+||||||.... ....++.+..+++|+.++.++++++. +.+..++||++||...+.+.
T Consensus 98 iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~~g~~IV~isS~~~~~~~------------ 165 (272)
T 2nwq_A 98 LRGLINNAGLALGTDPAQSCDLDDWDTMVDTNIKGLLYSTRLLLPRLIAHGAGASIVNLGSVAGKWPY------------ 165 (272)
T ss_dssp CCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCTTCEEEEECCGGGTSCC------------
T ss_pred CCEEEECCCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeCCchhccCC------------
Confidence 7999999997432 12234566789999999888877754 34432289999998776422
Q ss_pred CCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceEeccc
Q 012176 265 QPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTY 341 (469)
Q Consensus 265 ~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~ 341 (469)
.+...|+.+|.+.+.+++.++.+ +|+++++|+||.|.++..... +... ........ ....++.
T Consensus 166 ~~~~~Y~asKaa~~~l~~~la~el~~~gIrvn~v~PG~v~T~~~~~~-----~~~~--~~~~~~~~-------~~~~~~~ 231 (272)
T 2nwq_A 166 PGSHVYGGTKAFVEQFSLNLRCDLQGTGVRVTNLEPGLCESEFSLVR-----FGGD--QARYDKTY-------AGAHPIQ 231 (272)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTTCTTSCCEEEEEEECSBC----------------------------------CCCCBC
T ss_pred CCCchHHHHHHHHHHHHHHHHHHhCccCeEEEEEEcCCCcCcchhcc-----cccc--hHHHHHhh-------ccCCCCC
Confidence 34568999999999999999866 479999999999988743210 0000 00000001 0012478
Q ss_pred HHHHHHHHHHHhccCCCCCCCCCceEEEeCCC
Q 012176 342 IDDVVKGCVGATGSGGKKRGPAQLRVYNLGNT 373 (469)
Q Consensus 342 v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~ 373 (469)
++|+|++++.++..+. ...++.+.+.++
T Consensus 232 pedvA~~v~~l~s~~~----~~~g~~i~v~~~ 259 (272)
T 2nwq_A 232 PEDIAETIFWIMNQPA----HLNINSLEIMPV 259 (272)
T ss_dssp HHHHHHHHHHHHTSCT----TEEEEEEEEEET
T ss_pred HHHHHHHHHHHhCCCc----cCccceEEEeec
Confidence 9999999999987653 234466666554
|
| >4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.87 E-value=6.6e-22 Score=191.83 Aligned_cols=211 Identities=18% Similarity=0.117 Sum_probs=150.4
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhh--ccCCeEEEEecCCCHHHHHHhhccC-
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLL--QKHQVFIVEGDLNDAPLLTKLFDVV- 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~v~~v~~Dl~d~~~l~~~~~~~- 192 (469)
.++|+||||||+|+||.+++++|+++|++|++++|+.+. ......... ....+.++.+|++|+++++++++.+
T Consensus 31 l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~----~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~ 106 (281)
T 4dry_A 31 GEGRIALVTGGGTGVGRGIAQALSAEGYSVVITGRRPDV----LDAAAGEIGGRTGNIVRAVVCDVGDPDQVAALFAAVR 106 (281)
T ss_dssp ---CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHH----HHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHH----HHHHHHHHHhcCCCeEEEEEcCCCCHHHHHHHHHHHH
Confidence 578999999999999999999999999999999995432 122111111 1223689999999999999988765
Q ss_pred ----CccEEEEcccccCh-----hhhccChHHHHHHHHHHHHHHHHHHHh----cC-CCCeEEEEcCccccCCCCCCCCC
Q 012176 193 ----PFTHVLHLAAQAGV-----RYAMQNPQSYVASNIAGFVNLLEVCKS----VN-PQPSIVWASSSSVYGLNTQVPFS 258 (469)
Q Consensus 193 ----~~d~Vih~Aa~~~~-----~~~~~~~~~~~~~Nv~~~~~ll~aa~~----~~-~~~~~V~~SS~~vyg~~~~~~~~ 258 (469)
++|+||||||.... ....++.+..+++|+.++..+++++.. .+ ..++||++||...+.+.
T Consensus 107 ~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~~~g~IV~isS~~~~~~~------ 180 (281)
T 4dry_A 107 AEFARLDLLVNNAGSNVPPVPLEEVTFEQWNGIVAANLTGAFLCTQHAFRMMKAQTPRGGRIINNGSISAQTPR------ 180 (281)
T ss_dssp HHHSCCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHSSSCCEEEEEECCGGGTCCC------
T ss_pred HHcCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCcEEEEECCHHhCCCC------
Confidence 78999999997432 123455667999999999888887643 22 12489999997765322
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcc
Q 012176 259 ESHRTDQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREV 335 (469)
Q Consensus 259 E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 335 (469)
.+...|+.+|.+.+.+++.++.+ +|+++++|+||.|..+.... +... ... ......
T Consensus 181 ------~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~----------~~~~----~~~-~~~~~~ 239 (281)
T 4dry_A 181 ------PNSAPYTATKHAITGLTKSTALDGRMHDIACGQIDIGNAATDMTAR----------MSTG----VLQ-ANGEVA 239 (281)
T ss_dssp ------TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEECBCC-----------------CE----EEC-TTSCEE
T ss_pred ------CCChhHHHHHHHHHHHHHHHHHHhcccCeEEEEEEECcCcChhhhh----------hcch----hhh-hhhccc
Confidence 35678999999999999999876 48999999999998763221 1110 000 001112
Q ss_pred eEecccHHHHHHHHHHHhccCC
Q 012176 336 ARDFTYIDDVVKGCVGATGSGG 357 (469)
Q Consensus 336 ~~~~v~v~Dva~~~~~~~~~~~ 357 (469)
...++.++|+|++++.++..+.
T Consensus 240 ~~~~~~pedvA~~v~fL~s~~~ 261 (281)
T 4dry_A 240 AEPTIPIEHIAEAVVYMASLPL 261 (281)
T ss_dssp ECCCBCHHHHHHHHHHHHHSCT
T ss_pred ccCCCCHHHHHHHHHHHhCCCc
Confidence 2347899999999999998763
|
| >4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius} | Back alignment and structure |
|---|
Probab=99.87 E-value=3.1e-21 Score=183.34 Aligned_cols=227 Identities=12% Similarity=0.028 Sum_probs=164.3
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhc-cCCeEEEEecCCCHHHHHHhhccC--
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQ-KHQVFIVEGDLNDAPLLTKLFDVV-- 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~v~~v~~Dl~d~~~l~~~~~~~-- 192 (469)
.++|+++||||++.||+.+++.|+++|++|++++|+.+ .+.+....... ..++..+.+|++|+++++++++.+
T Consensus 5 L~gKvalVTGas~GIG~aiA~~la~~Ga~Vv~~~~~~~----~~~~~~~~i~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~ 80 (254)
T 4fn4_A 5 LKNKVVIVTGAGSGIGRAIAKKFALNDSIVVAVELLED----RLNQIVQELRGMGKEVLGVKADVSKKKDVEEFVRRTFE 80 (254)
T ss_dssp GTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH----HHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHH----HHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999999543 22222222222 347899999999999999888764
Q ss_pred ---CccEEEEcccccCh-----hhhccChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEEcCccccCCCCCCCCCCC
Q 012176 193 ---PFTHVLHLAAQAGV-----RYAMQNPQSYVASNIAGFVNLLEVCK----SVNPQPSIVWASSSSVYGLNTQVPFSES 260 (469)
Q Consensus 193 ---~~d~Vih~Aa~~~~-----~~~~~~~~~~~~~Nv~~~~~ll~aa~----~~~~~~~~V~~SS~~vyg~~~~~~~~E~ 260 (469)
++|++|||||.... +.++++++..+++|+.++..+.+++. +.+. ++||++||...+-+.
T Consensus 81 ~~G~iDiLVNNAGi~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~-G~IVnisS~~g~~~~-------- 151 (254)
T 4fn4_A 81 TYSRIDVLCNNAGIMDGVTPVAEVSDELWERVLAVNLYSAFYSSRAVIPIMLKQGK-GVIVNTASIAGIRGG-------- 151 (254)
T ss_dssp HHSCCCEEEECCCCCCTTCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-EEEEEECCGGGTCSS--------
T ss_pred HcCCCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCC-cEEEEEechhhcCCC--------
Confidence 78999999996432 23455677899999999999988754 3443 499999997765322
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCCCCC-hHHHHHHHHHcC-CceEEEeeCCCCcc
Q 012176 261 HRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDM-AYFFFTKDILQG-KTIDVYKTQDDREV 335 (469)
Q Consensus 261 ~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~~~~-~~~~~~~~~~~g-~~~~~~~~~~~~~~ 335 (469)
.....|+.+|.+...+.+.++.++ ||+++.|.||.|-.|...... .-....+...+. .++
T Consensus 152 ----~~~~~Y~asKaal~~ltr~lA~ela~~gIrVN~V~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~----------- 216 (254)
T 4fn4_A 152 ----FAGAPYTVAKHGLIGLTRSIAAHYGDQGIRAVAVLPGTVKTNIGLGSSKPSELGMRTLTKLMSLS----------- 216 (254)
T ss_dssp ----SSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSSCTTSCSSCCHHHHHHHHHHHTTC-----------
T ss_pred ----CCChHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEEeCCCCCcccccccCCcHHHHHHHHhcCCCC-----------
Confidence 234679999999999999998774 899999999999876432111 001111111111 111
Q ss_pred eEecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCC
Q 012176 336 ARDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTS 374 (469)
Q Consensus 336 ~~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~ 374 (469)
..+..++|+|.+++.++..... -..|+++.+.+|-
T Consensus 217 -~R~g~pediA~~v~fLaSd~a~---~iTG~~i~VDGG~ 251 (254)
T 4fn4_A 217 -SRLAEPEDIANVIVFLASDEAS---FVNGDAVVVDGGL 251 (254)
T ss_dssp -CCCBCHHHHHHHHHHHHSGGGT---TCCSCEEEESTTG
T ss_pred -CCCcCHHHHHHHHHHHhCchhc---CCcCCEEEeCCCc
Confidence 1244589999999988754432 3456999998874
|
| >4hp8_A 2-deoxy-D-gluconate 3-dehydrogenase; enzyme function initiative, EFI, structural genomics, oxidor; HET: NAP; 1.35A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=99.86 E-value=4.9e-21 Score=180.53 Aligned_cols=227 Identities=14% Similarity=0.084 Sum_probs=167.8
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCc
Q 012176 115 RPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPF 194 (469)
Q Consensus 115 ~~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~ 194 (469)
+.++|+++||||++.||+.+++.|+++|++|++.+|... ++..... .....++..+.+|++|++.++++++..++
T Consensus 6 ~L~GKvalVTGas~GIG~aiA~~la~~Ga~Vvi~~r~~~--~~~~~~~---~~~g~~~~~~~~Dv~d~~~v~~~~~~g~i 80 (247)
T 4hp8_A 6 SLEGRKALVTGANTGLGQAIAVGLAAAGAEVVCAARRAP--DETLDII---AKDGGNASALLIDFADPLAAKDSFTDAGF 80 (247)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCC--HHHHHHH---HHTTCCEEEEECCTTSTTTTTTSSTTTCC
T ss_pred CCCCCEEEEeCcCCHHHHHHHHHHHHcCCEEEEEeCCcH--HHHHHHH---HHhCCcEEEEEccCCCHHHHHHHHHhCCC
Confidence 478999999999999999999999999999999999643 1111111 11234789999999999999999987789
Q ss_pred cEEEEcccccCh----hhhccChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEEcCccccCCCCCCCCCCCCCCCCC
Q 012176 195 THVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCK----SVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQP 266 (469)
Q Consensus 195 d~Vih~Aa~~~~----~~~~~~~~~~~~~Nv~~~~~ll~aa~----~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p 266 (469)
|++|||||.... +.++++++..+++|+.++..+.+++. +.+..++||++||...+.+. ..
T Consensus 81 DiLVNNAGi~~~~~~~~~~~~~w~~~~~vNl~g~f~~~~~~~~~m~~~g~~G~IVnisS~~~~~g~------------~~ 148 (247)
T 4hp8_A 81 DILVNNAGIIRRADSVEFSELDWDEVMDVNLKALFFTTQAFAKELLAKGRSGKVVNIASLLSFQGG------------IR 148 (247)
T ss_dssp CEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSCC------------SS
T ss_pred CEEEECCCCCCCCCcccccHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCCcEEEEEechhhCCCC------------CC
Confidence 999999997432 23456677899999999999998753 33444599999997665322 23
Q ss_pred CChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceEecccHH
Q 012176 267 ASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYID 343 (469)
Q Consensus 267 ~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~ 343 (469)
...|+.+|.....+.+.++.++ ||+++.|.||.|-.|.......-+...+.+.+..|+.- +...+
T Consensus 149 ~~~Y~asKaav~~ltr~lA~Ela~~gIrVNaV~PG~i~T~~~~~~~~~~~~~~~~~~~~PlgR------------~g~pe 216 (247)
T 4hp8_A 149 VPSYTAAKHGVAGLTKLLANEWAAKGINVNAIAPGYIETNNTEALRADAARNKAILERIPAGR------------WGHSE 216 (247)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSGGGHHHHTSHHHHHHHHTTCTTSS------------CBCTH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHhhcCeEEEEEeeCCCCCcchhhcccCHHHHHHHHhCCCCCC------------CcCHH
Confidence 4679999999999999998775 89999999999987632210000223344555544422 34579
Q ss_pred HHHHHHHHHhccCCCCCCCCCceEEEeCCC
Q 012176 344 DVVKGCVGATGSGGKKRGPAQLRVYNLGNT 373 (469)
Q Consensus 344 Dva~~~~~~~~~~~~~~~~~~~~iyni~~~ 373 (469)
|+|.+++.++..... -..|+++.+.+|
T Consensus 217 eiA~~v~fLaSd~a~---~iTG~~i~VDGG 243 (247)
T 4hp8_A 217 DIAGAAVFLSSAAAD---YVHGAILNVDGG 243 (247)
T ss_dssp HHHHHHHHHTSGGGT---TCCSCEEEESTT
T ss_pred HHHHHHHHHhCchhc---CCcCCeEEECcc
Confidence 999999988754422 245689988876
|
| >1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain dehydrogenase, methotrexate resistance, oxidoreductase; HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2 PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A* 2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=1.1e-20 Score=184.02 Aligned_cols=228 Identities=14% Similarity=0.017 Sum_probs=164.6
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEe-CCCCCCChhHHHHHHHhh--ccCCeEEEEecCCCHH--------
Q 012176 115 RPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLD-NFNSYYDPSLKRARQKLL--QKHQVFIVEGDLNDAP-------- 183 (469)
Q Consensus 115 ~~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~-r~~~~~~~~~~~~~~~~~--~~~~v~~v~~Dl~d~~-------- 183 (469)
..++|+|+||||+|+||++++++|+++|++|++++ |+.+ .......... ...++.++.+|++|.+
T Consensus 6 ~l~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~~r~~~----~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~~~~~~~ 81 (291)
T 1e7w_A 6 APTVPVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAA----EANALSATLNARRPNSAITVQADLSNVATAPVSGAD 81 (291)
T ss_dssp --CCCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHH----HHHHHHHHHHHHSTTCEEEEECCCSSSCBCCCC---
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEcCCCHH----HHHHHHHHHhhhcCCeeEEEEeecCCcccccccccc
Confidence 35789999999999999999999999999999999 7432 2222222221 1347899999999999
Q ss_pred ---------HHHHhhccC-----CccEEEEcccccChh----hh--------------ccChHHHHHHHHHHHHHHHHHH
Q 012176 184 ---------LLTKLFDVV-----PFTHVLHLAAQAGVR----YA--------------MQNPQSYVASNIAGFVNLLEVC 231 (469)
Q Consensus 184 ---------~l~~~~~~~-----~~d~Vih~Aa~~~~~----~~--------------~~~~~~~~~~Nv~~~~~ll~aa 231 (469)
+++++++.+ ++|+||||||..... .. .++.+..+++|+.++..+++++
T Consensus 82 ~~~~~~~~~~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~ 161 (291)
T 1e7w_A 82 GSAPVTLFTRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRNDEDGHEPCVGDREAMETATADLFGSNAIAPYFLIKAF 161 (291)
T ss_dssp -CCCBCHHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCCCC-------------HHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred cccccchHHHHHHHHHHHHHhcCCCCEEEECCCCCCCCChhhcCccccccccccccccHHHHHHHHHHHhHHHHHHHHHH
Confidence 888888754 679999999974321 12 3445678999999999999987
Q ss_pred Hh----cCC-----CCeEEEEcCccccCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecc
Q 012176 232 KS----VNP-----QPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFT 299 (469)
Q Consensus 232 ~~----~~~-----~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~ 299 (469)
.. .+. .++||++||...+.+. .....|+.+|.+.+.+++.++.++ |+++++|+||.
T Consensus 162 ~~~m~~~~~~~~~~~g~Iv~isS~~~~~~~------------~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~ 229 (291)
T 1e7w_A 162 AHRVAGTPAKHRGTNYSIINMVDAMTNQPL------------LGYTIYTMAKGALEGLTRSAALELAPLQIRVNGVGPGL 229 (291)
T ss_dssp HHHHHTSCGGGSCSCEEEEEECCTTTTSCC------------TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESS
T ss_pred HHHHHhcCCCCCCCCcEEEEEechhhcCCC------------CCCchhHHHHHHHHHHHHHHHHHHHhcCeEEEEEeeCC
Confidence 53 331 2489999998776432 345789999999999999998764 89999999999
Q ss_pred eecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceEecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCCcc
Q 012176 300 VYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTSPV 376 (469)
Q Consensus 300 v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~~v 376 (469)
|..+. . .. +.+...+....++. ..+..++|+|++++.++..... ...|+++++.++..+
T Consensus 230 v~T~~-~--~~-~~~~~~~~~~~p~~-----------~r~~~pedvA~~v~~l~s~~~~---~itG~~i~vdGG~~~ 288 (291)
T 1e7w_A 230 SVLVD-D--MP-PAVWEGHRSKVPLY-----------QRDSSAAEVSDVVIFLCSSKAK---YITGTCVKVDGGYSL 288 (291)
T ss_dssp BCCGG-G--SC-HHHHHHHHTTCTTT-----------TSCBCHHHHHHHHHHHHSGGGT---TCCSCEEEESTTGGG
T ss_pred ccCCc-c--CC-HHHHHHHHhhCCCC-----------CCCCCHHHHHHHHHHHhCCccc---CccCcEEEECCCccc
Confidence 98775 2 11 23333333332220 0256799999999998864321 345689999887543
|
| >3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=1.6e-20 Score=177.76 Aligned_cols=215 Identities=13% Similarity=0.127 Sum_probs=160.0
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccC-----
Q 012176 118 GMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV----- 192 (469)
Q Consensus 118 ~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~----- 192 (469)
.|+||||||++.||+++++.|+++|++|++++|+++ .......+..++..+.+|++|+++++++++.+
T Consensus 2 nK~vlVTGas~GIG~aia~~la~~Ga~V~~~~~~~~-------~~~~~~~~~~~~~~~~~Dv~~~~~v~~~v~~~~~~~g 74 (247)
T 3ged_A 2 NRGVIVTGGGHGIGKQICLDFLEAGDKVCFIDIDEK-------RSADFAKERPNLFYFHGDVADPLTLKKFVEYAMEKLQ 74 (247)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHH-------HHHHHHTTCTTEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCHH-------HHHHHHHhcCCEEEEEecCCCHHHHHHHHHHHHHHcC
Confidence 379999999999999999999999999999998432 11122223457899999999999998888754
Q ss_pred CccEEEEcccccCh----hhhccChHHHHHHHHHHHHHHHHHHHhc--CCCCeEEEEcCccccCCCCCCCCCCCCCCCCC
Q 012176 193 PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCKSV--NPQPSIVWASSSSVYGLNTQVPFSESHRTDQP 266 (469)
Q Consensus 193 ~~d~Vih~Aa~~~~----~~~~~~~~~~~~~Nv~~~~~ll~aa~~~--~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p 266 (469)
++|++|||||.... ....++++..+++|+.++..+.+++... ..+++||++||...+.+. ..
T Consensus 75 ~iDiLVNNAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~~~m~~~~G~IInisS~~~~~~~------------~~ 142 (247)
T 3ged_A 75 RIDVLVNNACRGSKGILSSLLYEEFDYILSVGLKAPYELSRLCRDELIKNKGRIINIASTRAFQSE------------PD 142 (247)
T ss_dssp CCCEEEECCCCCCCCGGGTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEECCGGGTSCC------------TT
T ss_pred CCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCcEEEEeecccccCC------------CC
Confidence 68999999987432 2234566789999999999998876432 112499999997765432 23
Q ss_pred CChHHHHHHHHHHHHHHHHHHh--CCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceEecccHHH
Q 012176 267 ASLYAATKKAGEEIAHTYNHIY--GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDD 344 (469)
Q Consensus 267 ~~~Y~~sK~~~E~~~~~~~~~~--gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~D 344 (469)
...|+.+|.+.+.+.+.++.++ +++++.|.||.|-.+... .+.+......|+. .+...+|
T Consensus 143 ~~~Y~asKaal~~ltk~lA~ela~~IrVN~I~PG~i~t~~~~------~~~~~~~~~~Pl~------------R~g~ped 204 (247)
T 3ged_A 143 SEAYASAKGGIVALTHALAMSLGPDVLVNCIAPGWINVTEQQ------EFTQEDCAAIPAG------------KVGTPKD 204 (247)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTTTSEEEEEEECSBCCCC---------CCHHHHHTSTTS------------SCBCHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEecCcCCCCCcH------HHHHHHHhcCCCC------------CCcCHHH
Confidence 4679999999999999998876 799999999999766432 1222333333331 2456899
Q ss_pred HHHHHHHHhccCCCCCCCCCceEEEeCCCC
Q 012176 345 VVKGCVGATGSGGKKRGPAQLRVYNLGNTS 374 (469)
Q Consensus 345 va~~~~~~~~~~~~~~~~~~~~iyni~~~~ 374 (469)
+|.+++.++... -..|+++.+.+|-
T Consensus 205 iA~~v~fL~s~~-----~iTG~~i~VDGG~ 229 (247)
T 3ged_A 205 ISNMVLFLCQQD-----FITGETIIVDGGM 229 (247)
T ss_dssp HHHHHHHHHHCS-----SCCSCEEEESTTG
T ss_pred HHHHHHHHHhCC-----CCCCCeEEECcCH
Confidence 999999988642 3456999998874
|
| >3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.9e-20 Score=181.85 Aligned_cols=222 Identities=12% Similarity=0.059 Sum_probs=160.6
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCCh---hHHHHHHHhh-ccCCeEEEEecCCCHHHHHHhhcc
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDP---SLKRARQKLL-QKHQVFIVEGDLNDAPLLTKLFDV 191 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~---~~~~~~~~~~-~~~~v~~v~~Dl~d~~~l~~~~~~ 191 (469)
.++|++|||||+|+||++++++|+++|++|++++|+.+.... .+.+...... ...++.++.+|++|+++++++++.
T Consensus 7 l~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~ 86 (285)
T 3sc4_A 7 LRGKTMFISGGSRGIGLAIAKRVAADGANVALVAKSAEPHPKLPGTIYTAAKEIEEAGGQALPIVGDIRDGDAVAAAVAK 86 (285)
T ss_dssp CTTCEEEEESCSSHHHHHHHHHHHTTTCEEEEEESCCSCCSSSCCCHHHHHHHHHHHTSEEEEEECCTTSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECChhhhhhhhHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHH
Confidence 578999999999999999999999999999999998765433 2222222221 134789999999999999998875
Q ss_pred C-----CccEEEEcccccChh----hhccChHHHHHHHHHHHHHHHHHHHhcC---CCCeEEEEcCccccCCCCCCCCCC
Q 012176 192 V-----PFTHVLHLAAQAGVR----YAMQNPQSYVASNIAGFVNLLEVCKSVN---PQPSIVWASSSSVYGLNTQVPFSE 259 (469)
Q Consensus 192 ~-----~~d~Vih~Aa~~~~~----~~~~~~~~~~~~Nv~~~~~ll~aa~~~~---~~~~~V~~SS~~vyg~~~~~~~~E 259 (469)
. ++|+||||||..... ...++.+..+++|+.++.++++++...- ..++||++||...+....
T Consensus 87 ~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~~~------ 160 (285)
T 3sc4_A 87 TVEQFGGIDICVNNASAINLGSIEEVPLKRFDLMNGIQVRGTYAVSQSCIPHMKGRDNPHILTLSPPIRLEPKW------ 160 (285)
T ss_dssp HHHHHSCCSEEEECCCCCCCCCTTTSCHHHHHHHHHHHHHHHHHHHHHHGGGTTTSSSCEEEECCCCCCCSGGG------
T ss_pred HHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECChhhccCCC------
Confidence 4 689999999975432 2334556788999999999999876542 124999999976553210
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcce
Q 012176 260 SHRTDQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVA 336 (469)
Q Consensus 260 ~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 336 (469)
.+...|+.+|.+.+.+++.++.+ +|+++++|+||.+... .+.+....... ..
T Consensus 161 -----~~~~~Y~asKaal~~~~~~la~e~~~~gI~vn~v~PG~~v~t---------~~~~~~~~~~~-----------~~ 215 (285)
T 3sc4_A 161 -----LRPTPYMMAKYGMTLCALGIAEELRDAGIASNTLWPRTTVAT---------AAVQNLLGGDE-----------AM 215 (285)
T ss_dssp -----SCSHHHHHHHHHHHHHHHHHHHHTGGGTCEEEEEECSSCBCC---------HHHHHHHTSCC-----------CC
T ss_pred -----CCCchHHHHHHHHHHHHHHHHHHhcccCcEEEEEeCCCcccc---------HHHHhhccccc-----------cc
Confidence 23478999999999999999877 4899999999943321 12223222211 11
Q ss_pred EecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCC
Q 012176 337 RDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGN 372 (469)
Q Consensus 337 ~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~ 372 (469)
..+..++|+|++++.++..+.. ..|+++.+.+
T Consensus 216 ~r~~~pedvA~~~~~l~s~~~~----~tG~~i~~dg 247 (285)
T 3sc4_A 216 ARSRKPEVYADAAYVVLNKPSS----YTGNTLLCED 247 (285)
T ss_dssp TTCBCTHHHHHHHHHHHTSCTT----CCSCEEEHHH
T ss_pred cCCCCHHHHHHHHHHHhCCccc----ccceEEEEcC
Confidence 2356789999999999877632 2346665543
|
| >4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.2e-21 Score=186.20 Aligned_cols=229 Identities=13% Similarity=0.072 Sum_probs=166.2
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhc-cCCeEEEEecCCCHHHHHHhhccC-
Q 012176 115 RPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQ-KHQVFIVEGDLNDAPLLTKLFDVV- 192 (469)
Q Consensus 115 ~~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~v~~v~~Dl~d~~~l~~~~~~~- 192 (469)
+.++|+++||||++.||+.+++.|+++|++|++.+|+.+ .+.+....... ..++..+.+|++|+++++++++.+
T Consensus 6 ~L~gKvalVTGas~GIG~aia~~la~~Ga~Vvi~~~~~~----~~~~~~~~l~~~g~~~~~~~~Dv~~~~~v~~~~~~~~ 81 (255)
T 4g81_D 6 DLTGKTALVTGSARGLGFAYAEGLAAAGARVILNDIRAT----LLAESVDTLTRKGYDAHGVAFDVTDELAIEAAFSKLD 81 (255)
T ss_dssp CCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEECCSCHH----HHHHHHHHHHHTTCCEEECCCCTTCHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHH----HHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHH
Confidence 468999999999999999999999999999999999543 22222222222 347889999999999998888754
Q ss_pred ----CccEEEEcccccCh----hhhccChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEEcCccccCCCCCCCCCCC
Q 012176 193 ----PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCKS----VNPQPSIVWASSSSVYGLNTQVPFSES 260 (469)
Q Consensus 193 ----~~d~Vih~Aa~~~~----~~~~~~~~~~~~~Nv~~~~~ll~aa~~----~~~~~~~V~~SS~~vyg~~~~~~~~E~ 260 (469)
++|++|||||.... +.+.++++..+++|+.++..+.+++.. .+..++||++||...+.+.
T Consensus 82 ~~~G~iDiLVNNAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~~G~IVnisS~~~~~~~-------- 153 (255)
T 4g81_D 82 AEGIHVDILINNAGIQYRKPMVELELENWQKVIDTNLTSAFLVSRSAAKRMIARNSGGKIINIGSLTSQAAR-------- 153 (255)
T ss_dssp HTTCCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSBC--------
T ss_pred HHCCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHccCCCEEEEEeehhhcCCC--------
Confidence 68999999997443 234566778999999999999887532 2333499999998765432
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceE
Q 012176 261 HRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVAR 337 (469)
Q Consensus 261 ~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 337 (469)
.....|+.+|.+.+.+.+.++.++ ||+++.|.||.|..|.......-..+.+.+....|+.
T Consensus 154 ----~~~~~Y~asKaal~~ltr~lA~ela~~gIrVN~V~PG~i~T~~~~~~~~~~~~~~~~~~~~Pl~------------ 217 (255)
T 4g81_D 154 ----PTVAPYTAAKGGIKMLTCSMAAEWAQFNIQTNAIGPGYILTDMNTALIEDKQFDSWVKSSTPSQ------------ 217 (255)
T ss_dssp ----TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCGGGHHHHTCHHHHHHHHHHSTTC------------
T ss_pred ----CCchhHHHHHHHHHHHHHHHHHHhcccCeEEEEEeeCCCCCchhhcccCCHHHHHHHHhCCCCC------------
Confidence 235679999999999999998774 8999999999998763221000012333333333332
Q ss_pred ecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCC
Q 012176 338 DFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTS 374 (469)
Q Consensus 338 ~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~ 374 (469)
.+..++|+|.+++.++..... -..|+++.+.+|-
T Consensus 218 R~g~pediA~~v~fL~S~~a~---~iTG~~i~VDGG~ 251 (255)
T 4g81_D 218 RWGRPEELIGTAIFLSSKASD---YINGQIIYVDGGW 251 (255)
T ss_dssp SCBCGGGGHHHHHHHHSGGGT---TCCSCEEEESTTG
T ss_pred CCcCHHHHHHHHHHHhCchhC---CCcCCEEEECCCe
Confidence 244579999999888754322 3456899888763
|
| >3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.3e-20 Score=177.00 Aligned_cols=198 Identities=16% Similarity=0.112 Sum_probs=145.9
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccC--CccE
Q 012176 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--PFTH 196 (469)
Q Consensus 119 ~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~--~~d~ 196 (469)
|+||||||+|+||++++++|+++|++|++++|+.+ ........ + ..++.++.+|++|.++++++++.. .+|+
T Consensus 2 k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~----~~~~~~~~-~-~~~~~~~~~D~~~~~~v~~~~~~~~~~~d~ 75 (230)
T 3guy_A 2 SLIVITGASSGLGAELAKLYDAEGKATYLTGRSES----KLSTVTNC-L-SNNVGYRARDLASHQEVEQLFEQLDSIPST 75 (230)
T ss_dssp -CEEEESTTSHHHHHHHHHHHHTTCCEEEEESCHH----HHHHHHHT-C-SSCCCEEECCTTCHHHHHHHHHSCSSCCSE
T ss_pred CEEEEecCCchHHHHHHHHHHHCCCEEEEEeCCHH----HHHHHHHH-H-hhccCeEeecCCCHHHHHHHHHHHhhcCCE
Confidence 57999999999999999999999999999999532 12222221 1 347889999999999999999875 3699
Q ss_pred EEEcccccChh----hhccChHHHHHHHHHHHHHHHHHHHhcCC--CCeEEEEcCccccCCCCCCCCCCCCCCCCCCChH
Q 012176 197 VLHLAAQAGVR----YAMQNPQSYVASNIAGFVNLLEVCKSVNP--QPSIVWASSSSVYGLNTQVPFSESHRTDQPASLY 270 (469)
Q Consensus 197 Vih~Aa~~~~~----~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~--~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y 270 (469)
||||||..... ...++.+..+++|+.++.++++++..... ..+||++||...+.+. .+...|
T Consensus 76 lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~iv~isS~~~~~~~------------~~~~~Y 143 (230)
T 3guy_A 76 VVHSAGSGYFGLLQEQDPEQIQTLIENNLSSAINVLRELVKRYKDQPVNVVMIMSTAAQQPK------------AQESTY 143 (230)
T ss_dssp EEECCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCEEEEECCGGGTSCC------------TTCHHH
T ss_pred EEEeCCcCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeecccCCCC------------CCCchh
Confidence 99999974322 23345567899999999999998765421 1289999998776432 345789
Q ss_pred HHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceEecccHHHHHH
Q 012176 271 AATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVK 347 (469)
Q Consensus 271 ~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~ 347 (469)
+.+|.+.+.+++.++.++ |++++.|+||.|..+.... .. . ......+.+++|+|+
T Consensus 144 ~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~----------~~--~----------~~~~~~~~~~~dvA~ 201 (230)
T 3guy_A 144 CAVKWAVKGLIESVRLELKGKPMKIIAVYPGGMATEFWET----------SG--K----------SLDTSSFMSAEDAAL 201 (230)
T ss_dssp HHHHHHHHHHHHHHHHHTTTSSCEEEEEEECCC--------------------------------------CCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCeEEEEEECCcccChHHHh----------cC--C----------CCCcccCCCHHHHHH
Confidence 999999999999999875 7999999999998763221 00 0 111345788999999
Q ss_pred HHHHHhccC
Q 012176 348 GCVGATGSG 356 (469)
Q Consensus 348 ~~~~~~~~~ 356 (469)
+++.++.++
T Consensus 202 ~i~~l~~~~ 210 (230)
T 3guy_A 202 MIHGALANI 210 (230)
T ss_dssp HHHHHCCEE
T ss_pred HHHHHHhCc
Confidence 999998755
|
| >3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=2.7e-20 Score=185.59 Aligned_cols=210 Identities=12% Similarity=0.067 Sum_probs=155.8
Q ss_pred CCCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCCh---hHHHHHHHhh-ccCCeEEEEecCCCHHHHHHhh
Q 012176 114 RRPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDP---SLKRARQKLL-QKHQVFIVEGDLNDAPLLTKLF 189 (469)
Q Consensus 114 ~~~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~---~~~~~~~~~~-~~~~v~~v~~Dl~d~~~l~~~~ 189 (469)
...++|+||||||+|+||.+++++|+++|++|++++|+.+...+ .+........ ...++.++.+|++|++++++++
T Consensus 41 ~~l~gk~vlVTGas~GIG~aia~~La~~Ga~Vvl~~r~~~~~~~l~~~l~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~ 120 (346)
T 3kvo_A 41 GRLAGCTVFITGASRGIGKAIALKAAKDGANIVIAAKTAQPHPKLLGTIYTAAEEIEAVGGKALPCIVDVRDEQQISAAV 120 (346)
T ss_dssp STTTTCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESCCSCCSSSCCCHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHH
T ss_pred CCCCCCEEEEeCCChHHHHHHHHHHHHCCCEEEEEECChhhhhhhHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHH
Confidence 34678999999999999999999999999999999998765432 1222222222 2347889999999999999988
Q ss_pred ccC-----CccEEEEcccccChh----hhccChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEEcCccccCCCCCCC
Q 012176 190 DVV-----PFTHVLHLAAQAGVR----YAMQNPQSYVASNIAGFVNLLEVCKS----VNPQPSIVWASSSSVYGLNTQVP 256 (469)
Q Consensus 190 ~~~-----~~d~Vih~Aa~~~~~----~~~~~~~~~~~~Nv~~~~~ll~aa~~----~~~~~~~V~~SS~~vyg~~~~~~ 256 (469)
+.+ ++|+||||||..... ...++.+.++++|+.++.++++++.. .+. ++||++||...+....
T Consensus 121 ~~~~~~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~~~-g~IV~iSS~~~~~~~~--- 196 (346)
T 3kvo_A 121 EKAIKKFGGIDILVNNASAISLTNTLDTPTKRLDLMMNVNTRGTYLASKACIPYLKKSKV-AHILNISPPLNLNPVW--- 196 (346)
T ss_dssp HHHHHHHSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHTHHHHHHHHHHHHHHHTTCSS-CEEEEECCCCCCCGGG---
T ss_pred HHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHCCC-CEEEEECCHHHcCCCC---
Confidence 854 689999999974422 23345567899999999999998743 343 4999999987664311
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHHHHHHHHh--CCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCc
Q 012176 257 FSESHRTDQPASLYAATKKAGEEIAHTYNHIY--GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDRE 334 (469)
Q Consensus 257 ~~E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~--gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 334 (469)
..+...|+.+|.+.+.+++.++.++ ||++++|+||.+... .+.+.+....
T Consensus 197 -------~~~~~~Y~aSKaal~~l~~~la~e~~~gIrvn~v~PG~~i~T---------~~~~~~~~~~------------ 248 (346)
T 3kvo_A 197 -------FKQHCAYTIAKYGMSMYVLGMAEEFKGEIAVNALWPKTAIHT---------AAMDMLGGPG------------ 248 (346)
T ss_dssp -------TSSSHHHHHHHHHHHHHHHHHHHHTTTTCEEEEEECSBCBCC---------HHHHHHCC--------------
T ss_pred -------CCCchHHHHHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcccc---------HHHHhhcccc------------
Confidence 1345789999999999999999875 799999999964332 1222221111
Q ss_pred ceEecccHHHHHHHHHHHhcc
Q 012176 335 VARDFTYIDDVVKGCVGATGS 355 (469)
Q Consensus 335 ~~~~~v~v~Dva~~~~~~~~~ 355 (469)
....+..++|+|++++.++..
T Consensus 249 ~~~r~~~pedvA~~v~~L~s~ 269 (346)
T 3kvo_A 249 IESQCRKVDIIADAAYSIFQK 269 (346)
T ss_dssp CGGGCBCTHHHHHHHHHHHTS
T ss_pred ccccCCCHHHHHHHHHHHHhc
Confidence 122356789999999999877
|
| >3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase, short chain dehydrogenase/oxidoreductase, SD comamonas testosteroni; 1.80A {Pandoraea pnomenusa} SCOP: c.2.1.2 PDB: 2y99_A* 3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=2.3e-20 Score=181.01 Aligned_cols=228 Identities=16% Similarity=0.131 Sum_probs=162.4
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccC---
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~--- 192 (469)
.++|+||||||+|+||++++++|+++|++|++++|+.+ ........ ...++.++.+|++|.++++++++.+
T Consensus 3 l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~----~~~~~~~~--~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 76 (281)
T 3zv4_A 3 LTGEVALITGGASGLGRALVDRFVAEGARVAVLDKSAE----RLRELEVA--HGGNAVGVVGDVRSLQDQKRAAERCLAA 76 (281)
T ss_dssp TTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHH----HHHHHHHH--TBTTEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCHH----HHHHHHHH--cCCcEEEEEcCCCCHHHHHHHHHHHHHh
Confidence 56899999999999999999999999999999998532 12221111 1357899999999999998888765
Q ss_pred --CccEEEEcccccChh---------hhccChHHHHHHHHHHHHHHHHHHHhcC--CCCeEEEEcCccccCCCCCCCCCC
Q 012176 193 --PFTHVLHLAAQAGVR---------YAMQNPQSYVASNIAGFVNLLEVCKSVN--PQPSIVWASSSSVYGLNTQVPFSE 259 (469)
Q Consensus 193 --~~d~Vih~Aa~~~~~---------~~~~~~~~~~~~Nv~~~~~ll~aa~~~~--~~~~~V~~SS~~vyg~~~~~~~~E 259 (469)
++|+||||||..... ...+..+..+++|+.++..+++++.... ..++||++||...+.+.
T Consensus 77 ~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~------- 149 (281)
T 3zv4_A 77 FGKIDTLIPNAGIWDYSTALADLPEDKIDAAFDDIFHVNVKGYIHAVKACLPALVSSRGSVVFTISNAGFYPN------- 149 (281)
T ss_dssp HSCCCEEECCCCCCCTTCCGGGSCTTTHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCGGGTSSS-------
T ss_pred cCCCCEEEECCCcCccccccccCChhhhHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCeEEEEecchhccCC-------
Confidence 789999999974321 1112356788999999999999875321 12489999998766432
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHHhC--CcEEEEeecceecCCCCCCCh------HH--HHHHHHHcCCceEEEee
Q 012176 260 SHRTDQPASLYAATKKAGEEIAHTYNHIYG--LALTGLRFFTVYGPWGRPDMA------YF--FFTKDILQGKTIDVYKT 329 (469)
Q Consensus 260 ~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~g--i~~~ilRp~~v~Gp~~~~~~~------~~--~~~~~~~~g~~~~~~~~ 329 (469)
.....|+.+|.+.+.+++.++.+++ ++++.|+||.|..+....... .. .+...+....++
T Consensus 150 -----~~~~~Y~asKaa~~~l~~~la~e~~~~Irvn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~----- 219 (281)
T 3zv4_A 150 -----GGGPLYTATKHAVVGLVRQMAFELAPHVRVNGVAPGGMNTDLRGPSSLGLSEQSISSVPLADMLKSVLPI----- 219 (281)
T ss_dssp -----SSCHHHHHHHHHHHHHHHHHHHHHTTTSEEEEEEECSSCC--CCCTTCC--------CCHHHHHHHTCTT-----
T ss_pred -----CCCchhHHHHHHHHHHHHHHHHHhcCCCEEEEEECCcCcCCcccccccccccccccchhHHHHHHhcCCC-----
Confidence 3456799999999999999998764 999999999998874321100 00 011222222222
Q ss_pred CCCCcceEecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCCc
Q 012176 330 QDDREVARDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTSP 375 (469)
Q Consensus 330 ~~~~~~~~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~~ 375 (469)
..+..++|+|++++.++..+.. .-..|+++++.+|..
T Consensus 220 -------~r~~~pedvA~~v~fL~s~~~~--~~itG~~i~vdGG~~ 256 (281)
T 3zv4_A 220 -------GRMPALEEYTGAYVFFATRGDS--LPATGALLNYDGGMG 256 (281)
T ss_dssp -------SSCCCGGGGSHHHHHHHSTTTS--TTCSSCEEEESSSGG
T ss_pred -------CCCCCHHHHHHHHHHhhccccc--ccccCcEEEECCCCc
Confidence 2366789999999998873321 124669999988753
|
| >4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A | Back alignment and structure |
|---|
Probab=99.85 E-value=8.7e-20 Score=174.46 Aligned_cols=230 Identities=12% Similarity=-0.004 Sum_probs=167.3
Q ss_pred CCCCCCEEEEEcCCC--hhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHh--hccCCeEEEEecCCCHHHHHHhh
Q 012176 114 RRPNGMTVLVTGAAG--FVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKL--LQKHQVFIVEGDLNDAPLLTKLF 189 (469)
Q Consensus 114 ~~~~~~~VlVtGatG--~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~v~~v~~Dl~d~~~l~~~~ 189 (469)
.+.++|+++||||+| .||.++++.|+++|++|++.+|+.+ .+.+..... ....++..+.+|++|++++++++
T Consensus 2 ~~l~gK~alVTGaa~~~GIG~aiA~~la~~Ga~Vvi~~r~~~----~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~ 77 (256)
T 4fs3_A 2 LNLENKTYVIMGIANKRSIAFGVAKVLDQLGAKLVFTYRKER----SRKELEKLLEQLNQPEAHLYQIDVQSDEEVINGF 77 (256)
T ss_dssp CCCTTCEEEEECCCSTTCHHHHHHHHHHHTTCEEEEEESSGG----GHHHHHHHHGGGTCSSCEEEECCTTCHHHHHHHH
T ss_pred cCCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEECCHH----HHHHHHHHHHhcCCCcEEEEEccCCCHHHHHHHH
Confidence 347899999999886 8999999999999999999999643 222222222 22347899999999999998888
Q ss_pred ccC-----CccEEEEcccccChhh-----h---ccChHHHHHHHHHHHHHHHHHHHhcCC-CCeEEEEcCccccCCCCCC
Q 012176 190 DVV-----PFTHVLHLAAQAGVRY-----A---MQNPQSYVASNIAGFVNLLEVCKSVNP-QPSIVWASSSSVYGLNTQV 255 (469)
Q Consensus 190 ~~~-----~~d~Vih~Aa~~~~~~-----~---~~~~~~~~~~Nv~~~~~ll~aa~~~~~-~~~~V~~SS~~vyg~~~~~ 255 (469)
+.+ ++|++|||||...... . .++....+++|+.++..+..++..... .++||++||.+...+.
T Consensus 78 ~~~~~~~G~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~G~IVnisS~~~~~~~--- 154 (256)
T 4fs3_A 78 EQIGKDVGNIDGVYHSIAFANMEDLRGRFSETSREGFLLAQDISSYSLTIVAHEAKKLMPEGGSIVATTYLGGEFAV--- 154 (256)
T ss_dssp HHHHHHHCCCSEEEECCCCCCGGGGTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCTTCEEEEEEECGGGTSCC---
T ss_pred HHHHHHhCCCCEEEeccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCEEEEEeccccccCc---
Confidence 754 6899999999754321 1 223345678899999888887764422 2489999997654321
Q ss_pred CCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCC
Q 012176 256 PFSESHRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDD 332 (469)
Q Consensus 256 ~~~E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 332 (469)
.....|+.+|.+.+.+.+.++.++ ||+++.|.||.|-.+........+.+.+.+.+..|+.
T Consensus 155 ---------~~~~~Y~asKaal~~ltr~lA~Ela~~gIrVN~V~PG~i~T~~~~~~~~~~~~~~~~~~~~Pl~------- 218 (256)
T 4fs3_A 155 ---------QNYNVMGVAKASLEANVKYLALDLGPDNIRVNAISAGPIRTLSAKGVGGFNTILKEIKERAPLK------- 218 (256)
T ss_dssp ---------TTTHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCCCSGGGTTCTTHHHHHHHHHHHSTTS-------
T ss_pred ---------ccchhhHHHHHHHHHHHHHHHHHhCccCeEEEEEecCCCCChhhhhccCCHHHHHHHHhcCCCC-------
Confidence 345689999999999999998774 8999999999998775443333345555555554442
Q ss_pred CcceEecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCC
Q 012176 333 REVARDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTS 374 (469)
Q Consensus 333 ~~~~~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~ 374 (469)
.+...+|+|.+++.++..... -..|+++.+.+|-
T Consensus 219 -----R~g~peevA~~v~fL~Sd~a~---~iTG~~i~VDGG~ 252 (256)
T 4fs3_A 219 -----RNVDQVEVGKTAAYLLSDLSS---GVTGENIHVDSGF 252 (256)
T ss_dssp -----SCCCHHHHHHHHHHHHSGGGT---TCCSCEEEESTTG
T ss_pred -----CCcCHHHHHHHHHHHhCchhc---CccCCEEEECcCH
Confidence 234589999999988754322 2456899888763
|
| >3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.85 E-value=5.7e-21 Score=181.33 Aligned_cols=215 Identities=19% Similarity=0.147 Sum_probs=156.4
Q ss_pred CCCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhh--ccCCeEEEEecC--CCHHHHHHhh
Q 012176 114 RRPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLL--QKHQVFIVEGDL--NDAPLLTKLF 189 (469)
Q Consensus 114 ~~~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~v~~v~~Dl--~d~~~l~~~~ 189 (469)
...++|+|+||||+|+||++++++|+++|++|++++|+.. .......... ...++.++.+|+ +|.+++++++
T Consensus 10 ~~l~~k~vlITGas~gIG~~ia~~l~~~G~~V~~~~r~~~----~~~~~~~~~~~~~~~~~~~~~~d~d~~~~~~~~~~~ 85 (247)
T 3i1j_A 10 ELLKGRVILVTGAARGIGAAAARAYAAHGASVVLLGRTEA----SLAEVSDQIKSAGQPQPLIIALNLENATAQQYRELA 85 (247)
T ss_dssp TTTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHH----HHHHHHHHHHHTTSCCCEEEECCTTTCCHHHHHHHH
T ss_pred ccCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEecCHH----HHHHHHHHHHhcCCCCceEEEeccccCCHHHHHHHH
Confidence 3467899999999999999999999999999999999543 1222222211 124677888888 9999988888
Q ss_pred ccC-----CccEEEEcccccCh-----hhhccChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEEcCccccCCCCCC
Q 012176 190 DVV-----PFTHVLHLAAQAGV-----RYAMQNPQSYVASNIAGFVNLLEVCK----SVNPQPSIVWASSSSVYGLNTQV 255 (469)
Q Consensus 190 ~~~-----~~d~Vih~Aa~~~~-----~~~~~~~~~~~~~Nv~~~~~ll~aa~----~~~~~~~~V~~SS~~vyg~~~~~ 255 (469)
+.. ++|+||||||.... ....++.+..+++|+.++..+++++. +.+. ++||++||...+.+.
T Consensus 86 ~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~-~~iv~isS~~~~~~~--- 161 (247)
T 3i1j_A 86 ARVEHEFGRLDGLLHNASIIGPRTPLEQLPDEDFMQVMHVNVNATFMLTRALLPLLKRSED-ASIAFTSSSVGRKGR--- 161 (247)
T ss_dssp HHHHHHHSCCSEEEECCCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSS-EEEEEECCGGGTSCC---
T ss_pred HHHHHhCCCCCEEEECCccCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCC-CeEEEEcchhhcCCC---
Confidence 754 67999999997432 12345566889999999999999874 3343 499999997765422
Q ss_pred CCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHh----CCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCC
Q 012176 256 PFSESHRTDQPASLYAATKKAGEEIAHTYNHIY----GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQD 331 (469)
Q Consensus 256 ~~~E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~----gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 331 (469)
.+...|+.+|.+.+.+++.++.++ +++++.|+||.|..+ +.......
T Consensus 162 ---------~~~~~Y~~sK~a~~~~~~~la~e~~~~~~i~v~~v~PG~v~t~----------~~~~~~~~---------- 212 (247)
T 3i1j_A 162 ---------ANWGAYGVSKFATEGLMQTLADELEGVTAVRANSINPGATRTG----------MRAQAYPD---------- 212 (247)
T ss_dssp ---------TTCHHHHHHHHHHHHHHHHHHHHHTTTSSEEEEEEECCCCSSH----------HHHHHSTT----------
T ss_pred ---------CCcchhHHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCcccCc----------cchhcccc----------
Confidence 345789999999999999998774 799999999998764 11221111
Q ss_pred CCcceEecccHHHHHHHHHHHhccCCCCCCCCCceEEEe
Q 012176 332 DREVARDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNL 370 (469)
Q Consensus 332 ~~~~~~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni 370 (469)
.....+..++|+|++++.++..... ...|+++++
T Consensus 213 --~~~~~~~~p~dva~~~~~l~s~~~~---~itG~~i~~ 246 (247)
T 3i1j_A 213 --ENPLNNPAPEDIMPVYLYLMGPDST---GINGQALNA 246 (247)
T ss_dssp --SCGGGSCCGGGGTHHHHHHHSGGGT---TCCSCEEEC
T ss_pred --cCccCCCCHHHHHHHHHHHhCchhc---cccCeeecC
Confidence 1112356789999999998865422 234577765
|
| >4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=99.85 E-value=2.1e-20 Score=179.35 Aligned_cols=227 Identities=14% Similarity=0.089 Sum_probs=166.7
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccC--
Q 012176 115 RPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV-- 192 (469)
Q Consensus 115 ~~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~-- 192 (469)
+.++|++|||||++.||+.+++.|+++|++|++.+|+.+ .+.+...+. ..++..+.+|++|+++++++++.+
T Consensus 26 rL~gKvalVTGas~GIG~aiA~~la~~Ga~V~i~~r~~~----~l~~~~~~~--g~~~~~~~~Dv~~~~~v~~~~~~~~~ 99 (273)
T 4fgs_A 26 RLNAKIAVITGATSGIGLAAAKRFVAEGARVFITGRRKD----VLDAAIAEI--GGGAVGIQADSANLAELDRLYEKVKA 99 (273)
T ss_dssp TTTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHH----HHHHHHHHH--CTTCEEEECCTTCHHHHHHHHHHHHH
T ss_pred hhCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHH----HHHHHHHHc--CCCeEEEEecCCCHHHHHHHHHHHHH
Confidence 378999999999999999999999999999999999543 222222222 347889999999999999888765
Q ss_pred ---CccEEEEcccccCh----hhhccChHHHHHHHHHHHHHHHHHHHhcCC-CCeEEEEcCccccCCCCCCCCCCCCCCC
Q 012176 193 ---PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCKSVNP-QPSIVWASSSSVYGLNTQVPFSESHRTD 264 (469)
Q Consensus 193 ---~~d~Vih~Aa~~~~----~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~-~~~~V~~SS~~vyg~~~~~~~~E~~~~~ 264 (469)
++|++|||||.... +.++++++..+++|+.++..+++++...-. .++||++||...+.+.
T Consensus 100 ~~G~iDiLVNNAG~~~~~~~~~~~~e~w~~~~~vNl~g~~~~~~~~~p~m~~~G~IInisS~~~~~~~------------ 167 (273)
T 4fgs_A 100 EAGRIDVLFVNAGGGSMLPLGEVTEEQYDDTFDRNVKGVLFTVQKALPLLARGSSVVLTGSTAGSTGT------------ 167 (273)
T ss_dssp HHSCEEEEEECCCCCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEECCGGGGSCC------------
T ss_pred HcCCCCEEEECCCCCCCCChhhccHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCeEEEEeehhhccCC------------
Confidence 68999999997432 234566778999999999999998764321 2389999997665322
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCCC----CC-hHHHHHHHHHcCCceEEEeeCCCCcce
Q 012176 265 QPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRP----DM-AYFFFTKDILQGKTIDVYKTQDDREVA 336 (469)
Q Consensus 265 ~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~~----~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~ 336 (469)
.....|+.+|.+.+.+.+.++.++ ||+++.|.||.|..|.... +. ....+.+.+....|+.
T Consensus 168 ~~~~~Y~asKaav~~ltr~lA~Ela~~gIrVN~V~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~Plg----------- 236 (273)
T 4fgs_A 168 PAFSVYAASKAALRSFARNWILDLKDRGIRINTLSPGPTETTGLVELAGKDPVQQQGLLNALAAQVPMG----------- 236 (273)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHTTTSCEEEEEEEECSBCC---------CHHHHHHHHHHHHHHSTTS-----------
T ss_pred CCchHHHHHHHHHHHHHHHHHHHhcccCeEEEEEeeCCCCChhHHHhhccCchhhHHHHHHHHhcCCCC-----------
Confidence 234679999999999999999775 7999999999998764321 11 1123444444444442
Q ss_pred EecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCC
Q 012176 337 RDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTS 374 (469)
Q Consensus 337 ~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~ 374 (469)
.+..++|+|.+++.++..... -..|+++.+.+|.
T Consensus 237 -R~g~peeiA~~v~FLaSd~a~---~iTG~~i~VDGG~ 270 (273)
T 4fgs_A 237 -RVGRAEEVAAAALFLASDDSS---FVTGAELFVDGGS 270 (273)
T ss_dssp -SCBCHHHHHHHHHHHHSGGGT---TCCSCEEEESTTT
T ss_pred -CCcCHHHHHHHHHHHhCchhc---CccCCeEeECcCh
Confidence 244579999999988754422 3456899888764
|
| >4gkb_A 3-oxoacyl-[acyl-carrier protein] reductase; putative sugar dehydrogenase, enzyme function initiative, EF structural genomics; 1.50A {Burkholderia multivorans} PDB: 4glo_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=7.7e-20 Score=174.44 Aligned_cols=230 Identities=14% Similarity=0.065 Sum_probs=165.4
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccC--
Q 012176 115 RPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV-- 192 (469)
Q Consensus 115 ~~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~-- 192 (469)
..++|+++||||++.||+.+++.|+++|++|++.+|..+.. ...........++..+.+|++|+++++++++.+
T Consensus 4 ~L~gKvalVTGas~GIG~aia~~la~~Ga~Vv~~~r~~~~~----~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~v~~~~~ 79 (258)
T 4gkb_A 4 NLQDKVVIVTGGASGIGGAISMRLAEERAIPVVFARHAPDG----AFLDALAQRQPRATYLPVELQDDAQCRDAVAQTIA 79 (258)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCCH----HHHHHHHHHCTTCEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCcccH----HHHHHHHhcCCCEEEEEeecCCHHHHHHHHHHHHH
Confidence 36889999999999999999999999999999999976531 111111122457899999999999988888754
Q ss_pred ---CccEEEEcccccCh---hhhccChHHHHHHHHHHHHHHHHHHHhcC--CCCeEEEEcCccccCCCCCCCCCCCCCCC
Q 012176 193 ---PFTHVLHLAAQAGV---RYAMQNPQSYVASNIAGFVNLLEVCKSVN--PQPSIVWASSSSVYGLNTQVPFSESHRTD 264 (469)
Q Consensus 193 ---~~d~Vih~Aa~~~~---~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~--~~~~~V~~SS~~vyg~~~~~~~~E~~~~~ 264 (469)
++|++|||||.... +...++++..+++|+.++..+.+++...- .+++||++||...+.+.
T Consensus 80 ~~G~iDiLVNnAGi~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~G~IVnisS~~~~~~~------------ 147 (258)
T 4gkb_A 80 TFGRLDGLVNNAGVNDGIGLDAGRDAFVASLERNLIHYYAMAHYCVPHLKATRGAIVNISSKTAVTGQ------------ 147 (258)
T ss_dssp HHSCCCEEEECCCCCCCCCTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCTHHHHCC------------
T ss_pred HhCCCCEEEECCCCCCCCCccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCeEEEEeehhhccCC------------
Confidence 68999999997432 23345567889999999999988764320 12489999997665322
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCCCCC----hHHHHHHHHHcCCceEEEeeCCCCcceE
Q 012176 265 QPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDM----AYFFFTKDILQGKTIDVYKTQDDREVAR 337 (469)
Q Consensus 265 ~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~~~~----~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 337 (469)
.....|+.+|.+.+.+.+.++.++ ||+++.|.||.|..|...... ........+....|+. .
T Consensus 148 ~~~~~Y~asKaav~~ltr~lA~ela~~gIrVN~V~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~plg-----------~ 216 (258)
T 4gkb_A 148 GNTSGYCASKGAQLALTREWAVALREHGVRVNAVIPAEVMTPLYRNWIATFEDPEAKLAEIAAKVPLG-----------R 216 (258)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCCSCC-----------CHHHHHHTTCTTT-----------T
T ss_pred CCchHHHHHHHHHHHHHHHHHHHhcccCeEEEEEecCCCCChhHhhhhhcccChHHHHHHHHhcCCCC-----------C
Confidence 234679999999999999998764 899999999999877433210 0112233333433331 1
Q ss_pred ecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCC
Q 012176 338 DFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTS 374 (469)
Q Consensus 338 ~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~ 374 (469)
.+..++|+|.+++.++..... -..|+++.+.+|.
T Consensus 217 R~g~peeiA~~v~fLaS~~a~---~iTG~~i~VDGG~ 250 (258)
T 4gkb_A 217 RFTTPDEIADTAVFLLSPRAS---HTTGEWLFVDGGY 250 (258)
T ss_dssp SCBCHHHHHHHHHHHHSGGGT---TCCSCEEEESTTT
T ss_pred CCcCHHHHHHHHHHHhCchhc---CccCCeEEECCCc
Confidence 245689999999888754422 3456999998874
|
| >1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ... | Back alignment and structure |
|---|
Probab=99.85 E-value=2.3e-20 Score=181.36 Aligned_cols=202 Identities=15% Similarity=0.142 Sum_probs=149.8
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhh--ccCCeEEEEecCCCHHHHHHhhccC-
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLL--QKHQVFIVEGDLNDAPLLTKLFDVV- 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~v~~v~~Dl~d~~~l~~~~~~~- 192 (469)
.++|+|+||||+|+||++++++|+++|++|++++|+.+ .......... ...++.++.+|++|.++++++++..
T Consensus 26 ~~~k~vlITGasggIG~~la~~l~~~G~~V~~~~r~~~----~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~ 101 (286)
T 1xu9_A 26 LQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKE----TLQKVVSHCLELGAASAHYIAGTMEDMTFAEQFVAQAG 101 (286)
T ss_dssp GTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHH----HHHHHHHHHHHHTCSEEEEEECCTTCHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHH----HHHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHHHHHH
Confidence 56789999999999999999999999999999999543 1121111111 1236889999999999998888743
Q ss_pred ----CccEEEEc-ccccChh---hhccChHHHHHHHHHHHHHHHHHHHhc---CCCCeEEEEcCccccCCCCCCCCCCCC
Q 012176 193 ----PFTHVLHL-AAQAGVR---YAMQNPQSYVASNIAGFVNLLEVCKSV---NPQPSIVWASSSSVYGLNTQVPFSESH 261 (469)
Q Consensus 193 ----~~d~Vih~-Aa~~~~~---~~~~~~~~~~~~Nv~~~~~ll~aa~~~---~~~~~~V~~SS~~vyg~~~~~~~~E~~ 261 (469)
++|+|||| ||..... ...++.+..+++|+.++.++++++... +. ++||++||.+.+.+.
T Consensus 102 ~~~g~iD~li~naag~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~-g~iv~isS~~~~~~~--------- 171 (286)
T 1xu9_A 102 KLMGGLDMLILNHITNTSLNLFHDDIHHVRKSMEVNFLSYVVLTVAALPMLKQSN-GSIVVVSSLAGKVAY--------- 171 (286)
T ss_dssp HHHTSCSEEEECCCCCCCCCCCCSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEEEGGGTSCC---------
T ss_pred HHcCCCCEEEECCccCCCCccccCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHCC-CEEEEECCcccccCC---------
Confidence 57999999 5543221 123444678999999999999987542 22 499999998776432
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHh-----CCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcce
Q 012176 262 RTDQPASLYAATKKAGEEIAHTYNHIY-----GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVA 336 (469)
Q Consensus 262 ~~~~p~~~Y~~sK~~~E~~~~~~~~~~-----gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 336 (469)
.+...|+.+|.+.|.+++.++.++ ++++++++||.|.++. ......+ ...
T Consensus 172 ---~~~~~Y~asK~a~~~~~~~l~~e~~~~~~~i~v~~v~Pg~v~t~~----------~~~~~~~------------~~~ 226 (286)
T 1xu9_A 172 ---PMVAAYSASKFALDGFFSSIRKEYSVSRVNVSITLCVLGLIDTET----------AMKAVSG------------IVH 226 (286)
T ss_dssp ---TTCHHHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEEEECCBCCHH----------HHHHSCG------------GGG
T ss_pred ---CCccHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEeecCccCChh----------HHHhccc------------ccc
Confidence 345789999999999999988765 8999999999987641 1111111 112
Q ss_pred EecccHHHHHHHHHHHhccC
Q 012176 337 RDFTYIDDVVKGCVGATGSG 356 (469)
Q Consensus 337 ~~~v~v~Dva~~~~~~~~~~ 356 (469)
..+++++|+|+.++.++..+
T Consensus 227 ~~~~~~~~vA~~i~~~~~~~ 246 (286)
T 1xu9_A 227 MQAAPKEECALEIIKGGALR 246 (286)
T ss_dssp GGCBCHHHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHHhcC
Confidence 34688999999999998765
|
| >1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide catalysis, enantioselectivity, lyase; HET: RNO; 1.70A {Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A 1px0_A* 1pwx_A* 1zo8_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=3.4e-20 Score=176.97 Aligned_cols=218 Identities=12% Similarity=0.064 Sum_probs=149.7
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhh-ccCCeEEEEecCCCHHHHHHhhccC-----
Q 012176 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLL-QKHQVFIVEGDLNDAPLLTKLFDVV----- 192 (469)
Q Consensus 119 ~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~v~~v~~Dl~d~~~l~~~~~~~----- 192 (469)
|+|+||||+|+||++++++|+++|++|++++|+.+..+ .... .. ....+..+ |. ++++++++.+
T Consensus 2 k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~----~~~~-l~~~~~~~~~~--d~---~~v~~~~~~~~~~~g 71 (254)
T 1zmt_A 2 STAIVTNVKHFGGMGSALRLSEAGHTVACHDESFKQKD----ELEA-FAETYPQLKPM--SE---QEPAELIEAVTSAYG 71 (254)
T ss_dssp CEEEESSTTSTTHHHHHHHHHHTTCEEEECCGGGGSHH----HHHH-HHHHCTTSEEC--CC---CSHHHHHHHHHHHHS
T ss_pred eEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHH----HHHH-HHhcCCcEEEE--CH---HHHHHHHHHHHHHhC
Confidence 68999999999999999999999999999999654221 1111 11 12234433 44 4444444422
Q ss_pred CccEEEEccccc-Ch----hhhccChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEEcCccccCCCCCCCCCCCCCC
Q 012176 193 PFTHVLHLAAQA-GV----RYAMQNPQSYVASNIAGFVNLLEVCK----SVNPQPSIVWASSSSVYGLNTQVPFSESHRT 263 (469)
Q Consensus 193 ~~d~Vih~Aa~~-~~----~~~~~~~~~~~~~Nv~~~~~ll~aa~----~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~ 263 (469)
++|+||||||.. .. ....++.+..+++|+.++.++++++. +.+. ++||++||...+.+.
T Consensus 72 ~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~-g~iv~isS~~~~~~~----------- 139 (254)
T 1zmt_A 72 QVDVLVSNDIFAPEFQPIDKYAVEDYRGAVEALQIRPFALVNAVASQMKKRKS-GHIIFITSATPFGPW----------- 139 (254)
T ss_dssp CCCEEEEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-CEEEEECCSTTTSCC-----------
T ss_pred CCCEEEECCCcCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCC-cEEEEECCcccccCC-----------
Confidence 579999999975 21 12334556789999999999998874 3444 399999998766432
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCCCCChHH------HHHHHHHcCCceEEEeeCCCCc
Q 012176 264 DQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYF------FFTKDILQGKTIDVYKTQDDRE 334 (469)
Q Consensus 264 ~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~~~~~~~------~~~~~~~~g~~~~~~~~~~~~~ 334 (469)
.+...|+.+|.+.+.+++.++.++ |+++++|+||.|+||......... .+...+....+
T Consensus 140 -~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~~~~~~~~~~T~~~~~~~~~~~~~~~~~p----------- 207 (254)
T 1zmt_A 140 -KELSTYTSARAGACTLANALSKELGEYNIPVFAIGPNYLHSEDSPYFYPTEPWKTNPEHVAHVKKVTA----------- 207 (254)
T ss_dssp -TTCHHHHHHHHHHHHHHHHHHHHHGGGTCCEEEEEESSBCCBTCCSSCBHHHHTTCHHHHHHHHHHSS-----------
T ss_pred -CCchHHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCccccccccccCCCcccccChHHHHHHhccCC-----------
Confidence 345689999999999999998775 899999999999887543221111 11111111111
Q ss_pred ceEecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCC
Q 012176 335 VARDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTS 374 (469)
Q Consensus 335 ~~~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~ 374 (469)
...+.+++|+|++++.++..... ...|+++++.++.
T Consensus 208 -~~~~~~p~dvA~~v~~l~s~~~~---~~tG~~~~vdgG~ 243 (254)
T 1zmt_A 208 -LQRLGTQKELGELVAFLASGSCD---YLTGQVFWLAGGF 243 (254)
T ss_dssp -SSSCBCHHHHHHHHHHHHTTSCG---GGTTCEEEESTTC
T ss_pred -CCCCcCHHHHHHHHHHHhCcccC---CccCCEEEECCCc
Confidence 11367899999999998875432 2356999998875
|
| >2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=8.6e-21 Score=180.40 Aligned_cols=210 Identities=16% Similarity=0.103 Sum_probs=152.4
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhc-cCCeEEEEecCCCHHHHHHhhccC--
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQ-KHQVFIVEGDLNDAPLLTKLFDVV-- 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~v~~v~~Dl~d~~~l~~~~~~~-- 192 (469)
.++|+++||||+|+||++++++|+++|++|++++|+.+ ........... ..++.++.+|++|+++++++++..
T Consensus 5 l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~----~~~~~~~~l~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~ 80 (247)
T 2jah_A 5 LQGKVALITGASSGIGEATARALAAEGAAVAIAARRVE----KLRALGDELTAAGAKVHVLELDVADRQGVDAAVASTVE 80 (247)
T ss_dssp TTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHH----HHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHH----HHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHH
Confidence 56789999999999999999999999999999999542 12222222111 347899999999999999888743
Q ss_pred ---CccEEEEcccccChh----hhccChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEEcCccccCCCCCCCCCCCC
Q 012176 193 ---PFTHVLHLAAQAGVR----YAMQNPQSYVASNIAGFVNLLEVCKS----VNPQPSIVWASSSSVYGLNTQVPFSESH 261 (469)
Q Consensus 193 ---~~d~Vih~Aa~~~~~----~~~~~~~~~~~~Nv~~~~~ll~aa~~----~~~~~~~V~~SS~~vyg~~~~~~~~E~~ 261 (469)
++|+||||||..... ...++.+..+++|+.++.++++++.. .+ ++||++||...+.+.
T Consensus 81 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~--g~iv~isS~~~~~~~--------- 149 (247)
T 2jah_A 81 ALGGLDILVNNAGIMLLGPVEDADTTDWTRMIDTNLLGLMYMTRAALPHLLRSK--GTVVQMSSIAGRVNV--------- 149 (247)
T ss_dssp HHSCCSEEEECCCCCCCCCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEECCGGGTCCC---------
T ss_pred HcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHCC--CEEEEEccHHhcCCC---------
Confidence 679999999974321 23345567899999999999998753 34 499999998766422
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceEe
Q 012176 262 RTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARD 338 (469)
Q Consensus 262 ~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 338 (469)
.+...|+.+|.+.+.+++.++.++ |+++++|+||.|.++....... ... .......+ . . ..
T Consensus 150 ---~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~-~~~-~~~~~~~~----~----~---~~ 213 (247)
T 2jah_A 150 ---RNAAVYQATKFGVNAFSETLRQEVTERGVRVVVIEPGTTDTELRGHITH-TAT-KEMYEQRI----S----Q---IR 213 (247)
T ss_dssp ---TTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBSSSGGGGCCC-HHH-HHHHHHHT----T----T---SC
T ss_pred ---CCCcHHHHHHHHHHHHHHHHHHHhcccCcEEEEEECCCCCCcchhcccc-hhh-HHHHHhcc----c----c---cC
Confidence 345689999999999999988764 8999999999998874321110 111 11111000 0 0 11
Q ss_pred cccHHHHHHHHHHHhccC
Q 012176 339 FTYIDDVVKGCVGATGSG 356 (469)
Q Consensus 339 ~v~v~Dva~~~~~~~~~~ 356 (469)
+..++|+|++++.++..+
T Consensus 214 ~~~pedvA~~v~~l~s~~ 231 (247)
T 2jah_A 214 KLQAQDIAEAVRYAVTAP 231 (247)
T ss_dssp CBCHHHHHHHHHHHHHSC
T ss_pred CCCHHHHHHHHHHHhCCC
Confidence 578999999999998765
|
| >3e9n_A Putative short-chain dehydrogenase/reductase; structural genomics, unknown function, oxidoreductase, PSI- 2; 2.40A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.6e-20 Score=178.22 Aligned_cols=209 Identities=16% Similarity=0.143 Sum_probs=135.9
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHH---HHhhccC
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLL---TKLFDVV 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l---~~~~~~~ 192 (469)
.++|+||||||+|+||++++++|++ |+.|++++|+.+ . .....+..++.++.+|++|.+.. .+.++..
T Consensus 3 l~~k~vlITGas~gIG~~~a~~l~~-g~~v~~~~r~~~-------~-~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 73 (245)
T 3e9n_A 3 LKKKIAVVTGATGGMGIEIVKDLSR-DHIVYALGRNPE-------H-LAALAEIEGVEPIESDIVKEVLEEGGVDKLKNL 73 (245)
T ss_dssp ---CEEEEESTTSHHHHHHHHHHTT-TSEEEEEESCHH-------H-HHHHHTSTTEEEEECCHHHHHHTSSSCGGGTTC
T ss_pred CCCCEEEEEcCCCHHHHHHHHHHhC-CCeEEEEeCCHH-------H-HHHHHhhcCCcceecccchHHHHHHHHHHHHhc
Confidence 4678999999999999999999987 999999998432 1 11122245789999999887552 2223222
Q ss_pred -CccEEEEcccccChh----hhccChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEEcCccccCCCCCCCCCCCCCC
Q 012176 193 -PFTHVLHLAAQAGVR----YAMQNPQSYVASNIAGFVNLLEVCK----SVNPQPSIVWASSSSVYGLNTQVPFSESHRT 263 (469)
Q Consensus 193 -~~d~Vih~Aa~~~~~----~~~~~~~~~~~~Nv~~~~~ll~aa~----~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~ 263 (469)
++|+||||||..... ...++.+..+++|+.++..+++++. +.+ ++||++||...+.+.
T Consensus 74 ~~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~--g~iv~isS~~~~~~~----------- 140 (245)
T 3e9n_A 74 DHVDTLVHAAAVARDTTIEAGSVAEWHAHLDLNVIVPAELSRQLLPALRAAS--GCVIYINSGAGNGPH----------- 140 (245)
T ss_dssp SCCSEEEECC----------CHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEC-------------------
T ss_pred CCCCEEEECCCcCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcC--CeEEEEcCcccccCC-----------
Confidence 579999999975432 1344566789999999888888764 333 489999998877532
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceEecc
Q 012176 264 DQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFT 340 (469)
Q Consensus 264 ~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v 340 (469)
.+...|+.+|.+.+.+++.++.+ .|+++++|+||.|.++.... +.... + .......++
T Consensus 141 -~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~------~~~~~--~----------~~~~~~~~~ 201 (245)
T 3e9n_A 141 -PGNTIYAASKHALRGLADAFRKEEANNGIRVSTVSPGPTNTPMLQG------LMDSQ--G----------TNFRPEIYI 201 (245)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCC----------------------------------CCGGGS
T ss_pred -CCchHHHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCCccCchhhh------hhhhh--h----------cccccccCC
Confidence 34578999999999999999876 48999999999999874321 11100 0 011123578
Q ss_pred cHHHHHHHHHHHhccCCCCCCCCCceEEEeC
Q 012176 341 YIDDVVKGCVGATGSGGKKRGPAQLRVYNLG 371 (469)
Q Consensus 341 ~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~ 371 (469)
+++|+|++++.++..+. .+++||+.
T Consensus 202 ~p~dvA~~i~~l~~~~~------~~~~~~i~ 226 (245)
T 3e9n_A 202 EPKEIANAIRFVIDAGE------TTQITNVD 226 (245)
T ss_dssp CHHHHHHHHHHHHTSCT------TEEEEEEE
T ss_pred CHHHHHHHHHHHHcCCC------ccceeeeE
Confidence 99999999999997752 34778764
|
| >3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.84 E-value=5.2e-20 Score=177.77 Aligned_cols=216 Identities=13% Similarity=0.081 Sum_probs=155.7
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCCh---hHHHHHHHhh-ccCCeEEEEecCCCHHHHHHhhcc
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDP---SLKRARQKLL-QKHQVFIVEGDLNDAPLLTKLFDV 191 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~---~~~~~~~~~~-~~~~v~~v~~Dl~d~~~l~~~~~~ 191 (469)
.++|+++||||+|+||++++++|+++|++|++++|+...... .+........ ...++.++.+|++|+++++++++.
T Consensus 4 l~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~ 83 (274)
T 3e03_A 4 LSGKTLFITGASRGIGLAIALRAARDGANVAIAAKSAVANPKLPGTIHSAAAAVNAAGGQGLALKCDIREEDQVRAAVAA 83 (274)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCSCCTTSCCCHHHHHHHHHHHTSEEEEEECCTTCHHHHHHHHHH
T ss_pred CCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeccchhhhhhHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHH
Confidence 578999999999999999999999999999999998764322 1222222221 244789999999999999988875
Q ss_pred C-----CccEEEEcccccChh----hhccChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEEcCccccCCCCCCCCC
Q 012176 192 V-----PFTHVLHLAAQAGVR----YAMQNPQSYVASNIAGFVNLLEVCKS----VNPQPSIVWASSSSVYGLNTQVPFS 258 (469)
Q Consensus 192 ~-----~~d~Vih~Aa~~~~~----~~~~~~~~~~~~Nv~~~~~ll~aa~~----~~~~~~~V~~SS~~vyg~~~~~~~~ 258 (469)
. ++|+||||||..... ...++.+..+++|+.++..+++++.. .+. ++||++||...+....
T Consensus 84 ~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~-g~iv~isS~~~~~~~~----- 157 (274)
T 3e03_A 84 TVDTFGGIDILVNNASAIWLRGTLDTPMKRFDLMQQVNARGSFVCAQACLPHLLQAPN-PHILTLAPPPSLNPAW----- 157 (274)
T ss_dssp HHHHHSCCCEEEECCCCCCCCCGGGSCHHHHHHHHHHTHHHHHHHHHHHHHHHTTSSS-CEEEECCCCCCCCHHH-----
T ss_pred HHHHcCCCCEEEECCCcccCCCcccCCHHHHHHHHhHhhHhHHHHHHHHHHHHHhcCC-ceEEEECChHhcCCCC-----
Confidence 4 679999999974332 23345567899999999999998753 333 4999999977654210
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecc-eecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCc
Q 012176 259 ESHRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFT-VYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDRE 334 (469)
Q Consensus 259 E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~-v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 334 (469)
..+...|+.+|.+.+.+++.++.++ |+++++|+||. +-.+.. ....+ .
T Consensus 158 -----~~~~~~Y~asKaal~~l~~~la~e~~~~gI~vn~v~PG~~v~T~~~-----------~~~~~------------~ 209 (274)
T 3e03_A 158 -----WGAHTGYTLAKMGMSLVTLGLAAEFGPQGVAINALWPRTVIATDAI-----------NMLPG------------V 209 (274)
T ss_dssp -----HHHCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEECSBCBCC------------------C------------C
T ss_pred -----CCCCchHHHHHHHHHHHHHHHHHHhhhcCEEEEEEECCcccccchh-----------hhccc------------c
Confidence 0234679999999999999998774 79999999995 433211 01111 1
Q ss_pred ceEecccHHHHHHHHHHHhccCCCCCCCCCceEE
Q 012176 335 VARDFTYIDDVVKGCVGATGSGGKKRGPAQLRVY 368 (469)
Q Consensus 335 ~~~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iy 368 (469)
....+..++|+|++++.++..... ...|+++
T Consensus 210 ~~~~~~~pedvA~~v~~l~s~~~~---~itG~~i 240 (274)
T 3e03_A 210 DAAACRRPEIMADAAHAVLTREAA---GFHGQFL 240 (274)
T ss_dssp CGGGSBCTHHHHHHHHHHHTSCCT---TCCSCEE
T ss_pred cccccCCHHHHHHHHHHHhCcccc---ccCCeEE
Confidence 112367899999999999876532 2345666
|
| >1oaa_A Sepiapterin reductase; tetrahydrobiopterin, oxidoreductase; HET: NAP; 1.25A {Mus musculus} SCOP: c.2.1.2 PDB: 1nas_A* 1sep_A* 1z6z_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=8.1e-21 Score=181.75 Aligned_cols=223 Identities=14% Similarity=0.085 Sum_probs=155.9
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHH---CCCcEEEEeCCCCCCChhHHHHHHHhhc---cCCeEEEEecCCCHHHHHHhh
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKK---RGDGVLGLDNFNSYYDPSLKRARQKLLQ---KHQVFIVEGDLNDAPLLTKLF 189 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~---~G~~V~~~~r~~~~~~~~~~~~~~~~~~---~~~v~~v~~Dl~d~~~l~~~~ 189 (469)
.++|+++||||+|+||++++++|++ +|++|++++|+.+ ........... ..++.++.+|++|++++++++
T Consensus 4 l~~k~~lVTGas~gIG~~ia~~l~~~~~~G~~V~~~~r~~~----~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~ 79 (259)
T 1oaa_A 4 LGCAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSES----MLRQLKEELGAQQPDLKVVLAAADLGTEAGVQRLL 79 (259)
T ss_dssp CBSEEEEESSCSSHHHHHHHHHHHTTBCTTCEEEEEESCHH----HHHHHHHHHHHHCTTSEEEEEECCTTSHHHHHHHH
T ss_pred CCCcEEEEeCCCChHHHHHHHHHHHhhcCCCeEEEEeCCHH----HHHHHHHHHHhhCCCCeEEEEecCCCCHHHHHHHH
Confidence 5678999999999999999999999 8999999999542 12222222211 346889999999999988887
Q ss_pred ccC-------Ccc--EEEEcccccCh---h----hhccChHHHHHHHHHHHHHHHHHHHhcCC-----CCeEEEEcCccc
Q 012176 190 DVV-------PFT--HVLHLAAQAGV---R----YAMQNPQSYVASNIAGFVNLLEVCKSVNP-----QPSIVWASSSSV 248 (469)
Q Consensus 190 ~~~-------~~d--~Vih~Aa~~~~---~----~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~-----~~~~V~~SS~~v 248 (469)
+.+ ++| +||||||.... . ...++++..+++|+.++.++++++..... .++||++||...
T Consensus 80 ~~~~~~~~~g~~d~~~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~g~iv~isS~~~ 159 (259)
T 1oaa_A 80 SAVRELPRPEGLQRLLLINNAATLGDVSKGFLNVNDLAEVNNYWALNLTSMLCLTSGTLNAFQDSPGLSKTVVNISSLCA 159 (259)
T ss_dssp HHHHHSCCCTTCCEEEEEECCCCCCCCSSCGGGCCCHHHHHHHHHHHTHHHHHHHHHHHHTSCCCTTCEEEEEEECCGGG
T ss_pred HHHHhccccccCCccEEEECCcccCCCCcchhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCceEEEEcCchh
Confidence 643 468 99999997432 1 23355668999999999999999865422 237999999887
Q ss_pred cCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHh-CCcEEEEeecceecCCCCCCCh---HHHHHHHHHcCCce
Q 012176 249 YGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIY-GLALTGLRFFTVYGPWGRPDMA---YFFFTKDILQGKTI 324 (469)
Q Consensus 249 yg~~~~~~~~E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~-gi~~~ilRp~~v~Gp~~~~~~~---~~~~~~~~~~g~~~ 324 (469)
+.+. .+...|+.+|.+.+.+++.++.++ ++++++|+||.|-.+....... -......+....
T Consensus 160 ~~~~------------~~~~~Y~asKaa~~~~~~~la~e~~~i~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~-- 225 (259)
T 1oaa_A 160 LQPY------------KGWGLYCAGKAARDMLYQVLAAEEPSVRVLSYAPGPLDNDMQQLARETSKDPELRSKLQKLK-- 225 (259)
T ss_dssp TSCC------------TTCHHHHHHHHHHHHHHHHHHHHCTTEEEEEEECCSBSSHHHHHHHHHCSCHHHHHHHHHHH--
T ss_pred cCCC------------CCccHHHHHHHHHHHHHHHHHhhCCCceEEEecCCCcCcchHHHHhhccCChhHHHHHHHhh--
Confidence 6432 345789999999999999999886 4999999999986542110000 000011111000
Q ss_pred EEEeeCCCCcceEecccHHHHHHHHHHHhccCCCCCCCCCceEEEe
Q 012176 325 DVYKTQDDREVARDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNL 370 (469)
Q Consensus 325 ~~~~~~~~~~~~~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni 370 (469)
....+..++|+|++++.++.... ...|+++++
T Consensus 226 ----------p~~~~~~p~dvA~~v~~l~~~~~----~itG~~i~v 257 (259)
T 1oaa_A 226 ----------SDGALVDCGTSAQKLLGLLQKDT----FQSGAHVDF 257 (259)
T ss_dssp ----------HTTCSBCHHHHHHHHHHHHHHCC----SCTTEEEET
T ss_pred ----------hcCCcCCHHHHHHHHHHHHhhcc----ccCCcEEec
Confidence 01236789999999999886532 234466665
|
| >2h7i_A Enoyl-[acyl-carrier-protein] reductase [NADH]; oxidoreductase, INHA, enoyl acyl carrier reductase, pyrrolid carboxamide; HET: NAD 566; 1.62A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1p44_A* 1p45_A* 2b35_A* 2b36_A* 2b37_A* 2aq8_A* 2h7l_A* 2h7m_A* 2h7n_A* 2h7p_A* 2nsd_A* 2pr2_A* 2x22_A* 2x23_A* 3fne_A* 3fnf_A* 3fng_A* 3fnh_A* 3oew_A* 2aqh_A* ... | Back alignment and structure |
|---|
Probab=99.84 E-value=5.5e-20 Score=177.05 Aligned_cols=227 Identities=11% Similarity=0.028 Sum_probs=160.1
Q ss_pred CCCCEEEEEcC--CChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccC-
Q 012176 116 PNGMTVLVTGA--AGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV- 192 (469)
Q Consensus 116 ~~~~~VlVtGa--tG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~- 192 (469)
.++|+|+|||| +|+||++++++|+++|++|++++|+... ..... ...+ ..++.++.+|++|+++++++++.+
T Consensus 5 l~~k~vlVTGa~~s~gIG~aia~~l~~~G~~V~~~~r~~~~---~~~~~-~~~~-~~~~~~~~~Dv~~~~~v~~~~~~~~ 79 (269)
T 2h7i_A 5 LDGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDRLR---LIQRI-TDRL-PAKAPLLELDVQNEEHLASLAGRVT 79 (269)
T ss_dssp TTTCEEEECCCSSTTSHHHHHHHHHHHTTCEEEEEECSCHH---HHHHH-HTTS-SSCCCEEECCTTCHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCchHHHHHHHHHHCCCEEEEEecChHH---HHHHH-HHhc-CCCceEEEccCCCHHHHHHHHHHHH
Confidence 56799999999 9999999999999999999999985421 01111 1111 236789999999999999888743
Q ss_pred -------CccEEEEcccccCh---------hhhccChHHHHHHHHHHHHHHHHHHHhcCC-CCeEEEEcCccccCCCCCC
Q 012176 193 -------PFTHVLHLAAQAGV---------RYAMQNPQSYVASNIAGFVNLLEVCKSVNP-QPSIVWASSSSVYGLNTQV 255 (469)
Q Consensus 193 -------~~d~Vih~Aa~~~~---------~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~-~~~~V~~SS~~vyg~~~~~ 255 (469)
++|+||||||.... ....++.+..+++|+.++..+++++...-. .++||++||...++.
T Consensus 80 ~~~g~~~~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~iss~~~~~~---- 155 (269)
T 2h7i_A 80 EAIGAGNKLDGVVHSIGFMPQTGMGINPFFDAPYADVSKGIHISAYSYASMAKALLPIMNPGGSIVGMDFDPSRAM---- 155 (269)
T ss_dssp HHHCTTCCEEEEEECCCCCCGGGSTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECCCSSCC----
T ss_pred HHhCCCCCceEEEECCccCccccccccccccCCHHHHHHHHHHhhHHHHHHHHHHHHhhccCCeEEEEcCcccccc----
Confidence 67999999997541 123344567899999999999999865421 138999998765321
Q ss_pred CCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCC------CCChH----HHHHHHHHcCC
Q 012176 256 PFSESHRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGR------PDMAY----FFFTKDILQGK 322 (469)
Q Consensus 256 ~~~E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~------~~~~~----~~~~~~~~~g~ 322 (469)
.....|+.+|.+.+.+++.++.++ |+++++|+||.|..+... ..... ..+...+....
T Consensus 156 ---------~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (269)
T 2h7i_A 156 ---------PAYNWMTVAKSALESVNRFVAREAGKYGVRSNLVAAGPIRTLAMSAIVGGALGEEAGAQIQLLEEGWDQRA 226 (269)
T ss_dssp ---------TTTHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCCCCHHHHHHHTTTTCHHHHHHHHHHHHHHHHHC
T ss_pred ---------CchHHHHHHHHHHHHHHHHHHHHhcccCcEEEEEecCcccchhhhccccccchhhHHHHHHHHHHhhhccC
Confidence 345689999999999999998775 899999999998765210 00000 00111111111
Q ss_pred ceEEEeeCCCCcceEecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCC
Q 012176 323 TIDVYKTQDDREVARDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTS 374 (469)
Q Consensus 323 ~~~~~~~~~~~~~~~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~ 374 (469)
|+. +.+..++|+|++++.++..... ...|+++++.++.
T Consensus 227 p~~-----------rr~~~p~dvA~~v~~L~s~~~~---~itG~~i~vdGG~ 264 (269)
T 2h7i_A 227 PIG-----------WNMKDATPVAKTVCALLSDWLP---ATTGDIIYADGGA 264 (269)
T ss_dssp TTC-----------CCTTCCHHHHHHHHHHHSSSCT---TCCSEEEEESTTG
T ss_pred Ccc-----------cCCCCHHHHHHHHHHHhCchhc---cCcceEEEecCCe
Confidence 110 1356789999999998865422 3456899998874
|
| >3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.83 E-value=6.5e-20 Score=179.60 Aligned_cols=207 Identities=15% Similarity=0.058 Sum_probs=147.7
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhc--cCCeEEEEecCCCH-HHHHHhhccC
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQ--KHQVFIVEGDLNDA-PLLTKLFDVV 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~--~~~v~~v~~Dl~d~-~~l~~~~~~~ 192 (469)
.++|+||||||+|+||.+++++|+++|++|++++|+... .......... ..++.++.+|++|. +.++++++..
T Consensus 10 ~~~k~vlITGas~GIG~~~a~~L~~~G~~V~~~~r~~~~----~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~v~~~~~~~ 85 (311)
T 3o26_A 10 TKRRCAVVTGGNKGIGFEICKQLSSNGIMVVLTCRDVTK----GHEAVEKLKNSNHENVVFHQLDVTDPIATMSSLADFI 85 (311)
T ss_dssp --CCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHH----HHHHHHHHHTTTCCSEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCcEEEEecCCchHHHHHHHHHHHCCCEEEEEeCCHHH----HHHHHHHHHhcCCCceEEEEccCCCcHHHHHHHHHHH
Confidence 567899999999999999999999999999999995431 1222222222 24799999999998 8887777633
Q ss_pred -----CccEEEEcccccCh----------------------------------hhhccChHHHHHHHHHHHHHHHHHHHh
Q 012176 193 -----PFTHVLHLAAQAGV----------------------------------RYAMQNPQSYVASNIAGFVNLLEVCKS 233 (469)
Q Consensus 193 -----~~d~Vih~Aa~~~~----------------------------------~~~~~~~~~~~~~Nv~~~~~ll~aa~~ 233 (469)
++|+||||||.... ....+..+..+++|+.|+..+++++..
T Consensus 86 ~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~ 165 (311)
T 3o26_A 86 KTHFGKLDILVNNAGVAGFSVDADRFKAMISDIGEDSEELVKIYEKPEAQELMSETYELAEECLKINYNGVKSVTEVLIP 165 (311)
T ss_dssp HHHHSSCCEEEECCCCCSCEECHHHHHHHHHHHCSSTTHHHHHTTSHHHHTTEECCHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred HHhCCCCCEEEECCcccccccccchhhhcccccccchhhcchhhcccchhcccccchhhhhhheeeeeehHHHHHHHhhH
Confidence 67999999997532 112234456799999999999988643
Q ss_pred ----cCCCCeEEEEcCccccCCCCC--------------------------------CCCCCCCCCCCCCChHHHHHHHH
Q 012176 234 ----VNPQPSIVWASSSSVYGLNTQ--------------------------------VPFSESHRTDQPASLYAATKKAG 277 (469)
Q Consensus 234 ----~~~~~~~V~~SS~~vyg~~~~--------------------------------~~~~E~~~~~~p~~~Y~~sK~~~ 277 (469)
.+. ++||++||...+..... ....+...+ .+...|+.+|.+.
T Consensus 166 ~l~~~~~-~~IV~isS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Y~~SK~a~ 243 (311)
T 3o26_A 166 LLQLSDS-PRIVNVSSSTGSLKYVSNETALEILGDGDALTEERIDMVVNMLLKDFKENLIETNGWP-SFGAAYTTSKACL 243 (311)
T ss_dssp HHTTSSS-CEEEEECCGGGSGGGCCCHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHTTCTTTTTCC-SSCHHHHHHHHHH
T ss_pred hhccCCC-CeEEEEecCCcccccccchhhhhhhccccccchhHHHHHHHHHHhhhhccccccccCc-ccchhhHHHHHHH
Confidence 333 49999999765532210 001111111 3446799999999
Q ss_pred HHHHHHHHHHh-CCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceEecccHHHHHHHHHHHhccC
Q 012176 278 EEIAHTYNHIY-GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGATGSG 356 (469)
Q Consensus 278 E~~~~~~~~~~-gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~~~~~~~~~~ 356 (469)
+.+++.++.++ ++++++|+||.|..+..... .....++.++.++.++..+
T Consensus 244 ~~~~~~la~e~~~i~v~~v~PG~v~T~~~~~~-----------------------------~~~~~~~~a~~~~~~~~~~ 294 (311)
T 3o26_A 244 NAYTRVLANKIPKFQVNCVCPGLVKTEMNYGI-----------------------------GNYTAEEGAEHVVRIALFP 294 (311)
T ss_dssp HHHHHHHHHHCTTSEEEEECCCSBCSGGGTTC-----------------------------CSBCHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHhhcCCceEEEecCCceecCCcCCC-----------------------------CCCCHHHHHHHHHHHHhCC
Confidence 99999999886 69999999999987632210 1135789999999987765
Q ss_pred C
Q 012176 357 G 357 (469)
Q Consensus 357 ~ 357 (469)
.
T Consensus 295 ~ 295 (311)
T 3o26_A 295 D 295 (311)
T ss_dssp S
T ss_pred C
Confidence 4
|
| >4h15_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, nysgrc; HET: MSE; 1.45A {Sinorhizobium meliloti} PDB: 4h16_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=3e-19 Score=170.79 Aligned_cols=220 Identities=13% Similarity=0.036 Sum_probs=159.3
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccC--
Q 012176 115 RPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV-- 192 (469)
Q Consensus 115 ~~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~-- 192 (469)
..++|++|||||++.||+++++.|+++|++|++.+|..... ......+.+|++|+++++++++.+
T Consensus 8 ~L~GK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~-------------~~~~~~~~~Dv~~~~~v~~~~~~~~~ 74 (261)
T 4h15_A 8 NLRGKRALITAGTKGAGAATVSLFLELGAQVLTTARARPEG-------------LPEELFVEADLTTKEGCAIVAEATRQ 74 (261)
T ss_dssp CCTTCEEEESCCSSHHHHHHHHHHHHTTCEEEEEESSCCTT-------------SCTTTEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeccCcHHHHHHHHHHHHcCCEEEEEECCchhC-------------CCcEEEEEcCCCCHHHHHHHHHHHHH
Confidence 36899999999999999999999999999999999965421 113346889999999988888754
Q ss_pred ---CccEEEEcccccCh------hhhccChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEEcCccccCCCCCCCCCC
Q 012176 193 ---PFTHVLHLAAQAGV------RYAMQNPQSYVASNIAGFVNLLEVCK----SVNPQPSIVWASSSSVYGLNTQVPFSE 259 (469)
Q Consensus 193 ---~~d~Vih~Aa~~~~------~~~~~~~~~~~~~Nv~~~~~ll~aa~----~~~~~~~~V~~SS~~vyg~~~~~~~~E 259 (469)
++|++|||||.... ..+.++++..+++|+.++..+.+++. +.+. ++||++||...+-+..
T Consensus 75 ~~G~iDilVnnAG~~~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~-G~Iv~isS~~~~~~~~------ 147 (261)
T 4h15_A 75 RLGGVDVIVHMLGGSSAAGGGFSALSDDDWYNELSLNLFAAVRLDRQLVPDMVARGS-GVVVHVTSIQRVLPLP------ 147 (261)
T ss_dssp HTSSCSEEEECCCCCCCCSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-EEEEEECCGGGTSCCT------
T ss_pred HcCCCCEEEECCCCCccCCCCcccCCHHHHHHHHHHHhHHHHHHHHhhchhhhhcCC-ceEEEEEehhhccCCC------
Confidence 68999999996321 22345667899999999999888754 3444 3899999976542210
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCCC-----------C-ChHHHHHHHHHcCCce
Q 012176 260 SHRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRP-----------D-MAYFFFTKDILQGKTI 324 (469)
Q Consensus 260 ~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~~-----------~-~~~~~~~~~~~~g~~~ 324 (469)
.....|+.+|.+.+.+.+.++.++ ||+++.|.||.|-.|.... + .....+........|+
T Consensus 148 -----~~~~~Y~asKaal~~lt~~lA~Ela~~gIrVN~V~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pl 222 (261)
T 4h15_A 148 -----ESTTAYAAAKAALSTYSKAMSKEVSPKGVRVVRVSPGWIETEASVRLAERLAKQAGTDLEGGKKIIMDGLGGIPL 222 (261)
T ss_dssp -----TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTCCTT
T ss_pred -----CccHHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEeCCCcCCcchhhhhHHHHHhhccchhhHHHHHHHHhcCCCC
Confidence 134679999999999999998774 8999999999997652110 0 0111222333333333
Q ss_pred EEEeeCCCCcceEecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCC
Q 012176 325 DVYKTQDDREVARDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTS 374 (469)
Q Consensus 325 ~~~~~~~~~~~~~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~ 374 (469)
.-+...+|+|++++.++..... -..|+++.+.+|-
T Consensus 223 ------------gR~g~peevA~~v~fLaS~~a~---~itG~~i~VDGG~ 257 (261)
T 4h15_A 223 ------------GRPAKPEEVANLIAFLASDRAA---SITGAEYTIDGGT 257 (261)
T ss_dssp ------------SSCBCHHHHHHHHHHHHSGGGT---TCCSCEEEESTTC
T ss_pred ------------CCCcCHHHHHHHHHHHhCchhc---CccCcEEEECCcC
Confidence 2356689999999988754322 3456999998875
|
| >2fr1_A Erythromycin synthase, eryai; short chain dehydrogenase/reductase, oxidoreductase; HET: NDP; 1.79A {Saccharopolyspora erythraea} SCOP: c.2.1.2 c.2.1.2 PDB: 2fr0_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=2.1e-19 Score=187.08 Aligned_cols=208 Identities=20% Similarity=0.142 Sum_probs=151.6
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCc-EEEEeCCCCCCChhHHHHHHHhh-ccCCeEEEEecCCCHHHHHHhhccC-
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDG-VLGLDNFNSYYDPSLKRARQKLL-QKHQVFIVEGDLNDAPLLTKLFDVV- 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~-~~~~v~~v~~Dl~d~~~l~~~~~~~- 192 (469)
..+++||||||+|+||.++++.|+++|++ |++++|+..... ...+...... ...++.++.+|++|.++++++++.+
T Consensus 224 ~~~~~vLITGgtGgIG~~la~~La~~G~~~vvl~~R~~~~~~-~~~~l~~~l~~~g~~v~~~~~Dv~d~~~v~~~~~~i~ 302 (486)
T 2fr1_A 224 KPTGTVLVTGGTGGVGGQIARWLARRGAPHLLLVSRSGPDAD-GAGELVAELEALGARTTVAACDVTDRESVRELLGGIG 302 (486)
T ss_dssp CCCSEEEEETTTSHHHHHHHHHHHHHTCSEEEEEESSGGGST-THHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcCCCCCcH-HHHHHHHHHHhcCCEEEEEEeCCCCHHHHHHHHHHHH
Confidence 45789999999999999999999999996 999999653221 1112112111 1347899999999999999999876
Q ss_pred ---CccEEEEcccccChh----hhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcCccccCCCCCCCCCCCCCCCC
Q 012176 193 ---PFTHVLHLAAQAGVR----YAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQ 265 (469)
Q Consensus 193 ---~~d~Vih~Aa~~~~~----~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~ 265 (469)
++|+||||||..... ...++.+..+++|+.|+.+++++++..+.. +||++||.+.+.+. .
T Consensus 303 ~~g~ld~VIh~AG~~~~~~l~~~~~~~~~~~~~~nv~g~~~L~~~~~~~~~~-~~V~~SS~a~~~g~------------~ 369 (486)
T 2fr1_A 303 DDVPLSAVFHAAATLDDGTVDTLTGERIERASRAKVLGARNLHELTRELDLT-AFVLFSSFASAFGA------------P 369 (486)
T ss_dssp TTSCEEEEEECCCCCCCCCGGGCCHHHHHHHTHHHHHHHHHHHHHHTTSCCS-EEEEEEEHHHHTCC------------T
T ss_pred hcCCCcEEEECCccCCCCccccCCHHHHHHHHHHHHHHHHHHHHHhCcCCCC-EEEEEcChHhcCCC------------C
Confidence 679999999975431 233445578899999999999999888765 99999996543222 2
Q ss_pred CCChHHHHHHHHHHHHHHHHHHhCCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceEecccHHHH
Q 012176 266 PASLYAATKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDV 345 (469)
Q Consensus 266 p~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dv 345 (469)
....|+.+|...+.+.+.+.. .|+++++|+||.+++++..... . .... ......+++.+|+
T Consensus 370 g~~~Yaaaka~l~~la~~~~~-~gi~v~~i~pG~~~~~gm~~~~----~---------~~~~-----~~~g~~~i~~e~~ 430 (486)
T 2fr1_A 370 GLGGYAPGNAYLDGLAQQRRS-DGLPATAVAWGTWAGSGMAEGP----V---------ADRF-----RRHGVIEMPPETA 430 (486)
T ss_dssp TCTTTHHHHHHHHHHHHHHHH-TTCCCEEEEECCBC-------------------------C-----TTTTEECBCHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHh-cCCeEEEEECCeeCCCcccchh----H---------HHHH-----HhcCCCCCCHHHH
Confidence 356799999999998887765 5999999999999876422110 0 0001 1122467999999
Q ss_pred HHHHHHHhccC
Q 012176 346 VKGCVGATGSG 356 (469)
Q Consensus 346 a~~~~~~~~~~ 356 (469)
++++..++..+
T Consensus 431 a~~l~~~l~~~ 441 (486)
T 2fr1_A 431 CRALQNALDRA 441 (486)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHhCC
Confidence 99999999865
|
| >3u0b_A Oxidoreductase, short chain dehydrogenase/reducta protein; structural genomics, ssgcid; 1.70A {Mycobacterium smegmatis} PDB: 3lls_A 3v1t_C 3v1u_A* 4fw8_A* 3q6i_A* 3m1l_A | Back alignment and structure |
|---|
Probab=99.82 E-value=4.8e-19 Score=182.71 Aligned_cols=223 Identities=13% Similarity=0.032 Sum_probs=159.0
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccC---
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~--- 192 (469)
.+++++|||||+|+||.++++.|+++|++|++++|... ...........++.++.+|++|.++++++++.+
T Consensus 211 l~gk~~LVTGgsgGIG~aiA~~La~~Ga~Vvl~~r~~~------~~~l~~~~~~~~~~~~~~Dvtd~~~v~~~~~~~~~~ 284 (454)
T 3u0b_A 211 LDGKVAVVTGAARGIGATIAEVFARDGATVVAIDVDGA------AEDLKRVADKVGGTALTLDVTADDAVDKITAHVTEH 284 (454)
T ss_dssp TTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEECGGG------HHHHHHHHHHHTCEEEECCTTSTTHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCchHHHHHHHHHHHHCCCEEEEEeCCcc------HHHHHHHHHHcCCeEEEEecCCHHHHHHHHHHHHHH
Confidence 46899999999999999999999999999999998432 111122222236789999999999998888753
Q ss_pred ---CccEEEEcccccChh----hhccChHHHHHHHHHHHHHHHHHHHhc----CCCCeEEEEcCccccCCCCCCCCCCCC
Q 012176 193 ---PFTHVLHLAAQAGVR----YAMQNPQSYVASNIAGFVNLLEVCKSV----NPQPSIVWASSSSVYGLNTQVPFSESH 261 (469)
Q Consensus 193 ---~~d~Vih~Aa~~~~~----~~~~~~~~~~~~Nv~~~~~ll~aa~~~----~~~~~~V~~SS~~vyg~~~~~~~~E~~ 261 (469)
++|+||||||..... ...++.+..+++|+.++.++.+++... +. .+||++||...+.+.
T Consensus 285 ~g~~id~lV~nAGv~~~~~~~~~~~~~~~~~~~~nv~g~~~l~~~~~~~~~~~~~-g~iV~iSS~a~~~g~--------- 354 (454)
T 3u0b_A 285 HGGKVDILVNNAGITRDKLLANMDEKRWDAVIAVNLLAPQRLTEGLVGNGTIGEG-GRVIGLSSMAGIAGN--------- 354 (454)
T ss_dssp STTCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHTTSSCTT-CEEEEECCHHHHHCC---------
T ss_pred cCCCceEEEECCcccCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCC-CEEEEEeChHhCCCC---------
Confidence 489999999975432 234455678999999999999998765 33 499999997655322
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceEe
Q 012176 262 RTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARD 338 (469)
Q Consensus 262 ~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 338 (469)
.....|+.+|...+.+++.++.++ |+++++|+||.|..+....... .......... ....
T Consensus 355 ---~g~~~YaasKaal~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~--~~~~~~~~~~------------~l~r 417 (454)
T 3u0b_A 355 ---RGQTNYATTKAGMIGLAEALAPVLADKGITINAVAPGFIETKMTEAIPL--ATREVGRRLN------------SLFQ 417 (454)
T ss_dssp ---TTCHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECSBCC------------CHHHHHSB------------TTSS
T ss_pred ---CCCHHHHHHHHHHHHHHHHHHHHhhhcCcEEEEEEcCcccChhhhhcch--hhHHHHHhhc------------cccC
Confidence 345789999999999999888664 8999999999998874331100 0000001111 1122
Q ss_pred cccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCC
Q 012176 339 FTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTS 374 (469)
Q Consensus 339 ~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~ 374 (469)
+..++|+|++++.++..... ...|+++++.++.
T Consensus 418 ~g~pedvA~~v~fL~s~~a~---~itG~~i~vdGG~ 450 (454)
T 3u0b_A 418 GGQPVDVAELIAYFASPASN---AVTGNTIRVCGQA 450 (454)
T ss_dssp CBCHHHHHHHHHHHHCGGGT---TCCSCEEEESSSB
T ss_pred CCCHHHHHHHHHHHhCCccC---CCCCcEEEECCcc
Confidence 45789999999988764422 3456999998865
|
| >1jtv_A 17 beta-hydroxysteroid dehydrogenase type 1; steroid hormones, alternative binding mode, oxidoreductase; HET: TES; 1.54A {Homo sapiens} SCOP: c.2.1.2 PDB: 1dht_A* 1equ_A* 1bhs_A* 1i5r_A* 1qyv_A* 1qyw_A* 1qyx_A* 3dey_X* 3dhe_A* 3hb4_X* 3hb5_X* 3klp_X* 3km0_A* 1iol_A* 1fds_A* 1fdt_A* 3klm_X* 1fdw_A* 1fdu_A* 1fdv_A* ... | Back alignment and structure |
|---|
Probab=99.81 E-value=1.9e-19 Score=178.36 Aligned_cols=174 Identities=15% Similarity=0.109 Sum_probs=133.2
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHh---hccCCeEEEEecCCCHHHHHHhhccC--
Q 012176 118 GMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKL---LQKHQVFIVEGDLNDAPLLTKLFDVV-- 192 (469)
Q Consensus 118 ~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~---~~~~~v~~v~~Dl~d~~~l~~~~~~~-- 192 (469)
+|+|+||||+|+||++++++|+++|++|++++|................ ....++.++.+|++|.++++++++.+
T Consensus 2 ~k~vlVTGas~GIG~ala~~L~~~G~~v~~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~ 81 (327)
T 1jtv_A 2 RTVVLITGCSSGIGLHLAVRLASDPSQSFKVYATLRDLKTQGRLWEAARALACPPGSLETLQLDVRDSKSVAAARERVTE 81 (327)
T ss_dssp CEEEEESCCSSHHHHHHHHHHHTCTTCCEEEEEEESCGGGTHHHHHHHHHTTCCTTSEEEEECCTTCHHHHHHHHHTCTT
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCceEEEEeecCcHHHHHHHHHHhhhccCCCCceEEEEecCCCHHHHHHHHHHHhc
Confidence 5789999999999999999999999999988876543322211111110 11247899999999999999998864
Q ss_pred -CccEEEEcccccCh----hhhccChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEEcCccccCCCCCCCCCCCCCC
Q 012176 193 -PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVC----KSVNPQPSIVWASSSSVYGLNTQVPFSESHRT 263 (469)
Q Consensus 193 -~~d~Vih~Aa~~~~----~~~~~~~~~~~~~Nv~~~~~ll~aa----~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~ 263 (469)
++|+||||||.... ....++.+.++++|+.++.++++++ ++.+.. +||++||...+...
T Consensus 82 g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~m~~~~~g-~IV~isS~~~~~~~----------- 149 (327)
T 1jtv_A 82 GRVDVLVCNAGLGLLGPLEALGEDAVASVLDVNVVGTVRMLQAFLPDMKRRGSG-RVLVTGSVGGLMGL----------- 149 (327)
T ss_dssp SCCSEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE-EEEEEEEGGGTSCC-----------
T ss_pred CCCCEEEECCCcCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCC-EEEEECCcccccCC-----------
Confidence 57999999996432 1233456689999999999999986 344544 99999998766422
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeecceecCC
Q 012176 264 DQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPW 304 (469)
Q Consensus 264 ~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~Gp~ 304 (469)
.....|+.+|.+.|.+++.++.+ +|+++++|+||.|..+.
T Consensus 150 -~~~~~Y~aSK~a~~~~~~~la~el~~~gI~v~~v~PG~v~T~~ 192 (327)
T 1jtv_A 150 -PFNDVYCASKFALEGLCESLAVLLLPFGVHLSLIECGPVHTAF 192 (327)
T ss_dssp -TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCC--
T ss_pred -CCChHHHHHHHHHHHHHHHHHHHhhhcCcEEEEEEeCcccChH
Confidence 23468999999999999999876 58999999999998874
|
| >1zmo_A Halohydrin dehalogenase; haloalcohol dehalogenase, short- chain dehydrogenase/reductase family, lyase; 2.00A {Arthrobacter SP} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.9e-19 Score=170.82 Aligned_cols=215 Identities=12% Similarity=0.022 Sum_probs=145.8
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHCCCcEEEE-e--CCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhcc---
Q 012176 118 GMTVLVTGAAGFVGSHCSLALKKRGDGVLGL-D--NFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDV--- 191 (469)
Q Consensus 118 ~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~-~--r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~--- 191 (469)
+|+|+||||+|+||++++++|+++|++|+++ + |+.+ ......... .+..+ .|.++++++++.
T Consensus 1 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~~~~r~~~----~~~~~~~~~---~~~~~-----~~~~~v~~~~~~~~~ 68 (244)
T 1zmo_A 1 MVIALVTHARHFAGPAAVEALTQDGYTVVCHDASFADAA----ERQRFESEN---PGTIA-----LAEQKPERLVDATLQ 68 (244)
T ss_dssp -CEEEESSTTSTTHHHHHHHHHHTTCEEEECCGGGGSHH----HHHHHHHHS---TTEEE-----CCCCCGGGHHHHHGG
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEecCCcCCHH----HHHHHHHHh---CCCcc-----cCHHHHHHHHHHHHH
Confidence 4789999999999999999999999999999 6 8432 122222221 13332 244444444432
Q ss_pred -C-CccEEEEcccccCh-------hhhccChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEEcCccccCCCCCCCCC
Q 012176 192 -V-PFTHVLHLAAQAGV-------RYAMQNPQSYVASNIAGFVNLLEVCK----SVNPQPSIVWASSSSVYGLNTQVPFS 258 (469)
Q Consensus 192 -~-~~d~Vih~Aa~~~~-------~~~~~~~~~~~~~Nv~~~~~ll~aa~----~~~~~~~~V~~SS~~vyg~~~~~~~~ 258 (469)
. ++|+||||||.... ....++.+..+++|+.++.++++++. +.+. ++||++||...+.+.
T Consensus 69 ~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~-g~iv~isS~~~~~~~------ 141 (244)
T 1zmo_A 69 HGEAIDTIVSNDYIPRPMNRLPLEGTSEADIRQMFEALSIFPILLLQSAIAPLRAAGG-ASVIFITSSVGKKPL------ 141 (244)
T ss_dssp GSSCEEEEEECCCCCTTGGGCCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTC-EEEEEECCGGGTSCC------
T ss_pred HcCCCCEEEECCCcCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCC-cEEEEECChhhCCCC------
Confidence 2 57999999997543 12234556789999999999999875 3443 399999998776432
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCC---CCCChH-HHHHHHHHc-CCceEEEeeC
Q 012176 259 ESHRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWG---RPDMAY-FFFTKDILQ-GKTIDVYKTQ 330 (469)
Q Consensus 259 E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~---~~~~~~-~~~~~~~~~-g~~~~~~~~~ 330 (469)
.+...|+.+|.+.+.+++.++.++ |+++++|+||.|..+.. .. .. ......+.. ..++
T Consensus 142 ------~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~--~~~~~~~~~~~~~~~p~------ 207 (244)
T 1zmo_A 142 ------AYNPLYGPARAATVALVESAAKTLSRDGILLYAIGPNFFNNPTYFPTSD--WENNPELRERVDRDVPL------ 207 (244)
T ss_dssp ------TTCTTHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBCBTTTBCHHH--HHHCHHHHHHHHHHCTT------
T ss_pred ------CCchHHHHHHHHHHHHHHHHHHHHhhcCcEEEEEeeCCCcCCccccccc--ccchHHHHHHHhcCCCC------
Confidence 345679999999999999998764 89999999999987743 11 00 011111111 1111
Q ss_pred CCCcceEecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCC
Q 012176 331 DDREVARDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTS 374 (469)
Q Consensus 331 ~~~~~~~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~ 374 (469)
..+..++|+|++++.++..... ...|+++.+.++.
T Consensus 208 ------~r~~~pe~vA~~v~~l~s~~~~---~~tG~~i~vdgG~ 242 (244)
T 1zmo_A 208 ------GRLGRPDEMGALITFLASRRAA---PIVGQFFAFTGGY 242 (244)
T ss_dssp ------CSCBCHHHHHHHHHHHHTTTTG---GGTTCEEEESTTC
T ss_pred ------CCCcCHHHHHHHHHHHcCcccc---CccCCEEEeCCCC
Confidence 1356799999999998865421 2346888887763
|
| >2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain, structura genomics consortium, SGC, oxidoreductase; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.81 E-value=2.4e-19 Score=171.61 Aligned_cols=214 Identities=18% Similarity=0.077 Sum_probs=145.5
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhh-ccCCeEEEEecCCCHHHHHHhhccC--
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLL-QKHQVFIVEGDLNDAPLLTKLFDVV-- 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~v~~v~~Dl~d~~~l~~~~~~~-- 192 (469)
.++|+++||||+|+||++++++|+++|++|++++|+.+ .......... ...++.++.+|++|+++++++++.+
T Consensus 3 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~----~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 78 (260)
T 2qq5_A 3 MNGQVCVVTGASRGIGRGIALQLCKAGATVYITGRHLD----TLRVVAQEAQSLGGQCVPVVCDSSQESEVRSLFEQVDR 78 (260)
T ss_dssp TTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHH----HHHHHHHHHHHHSSEEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHH----HHHHHHHHHHHcCCceEEEECCCCCHHHHHHHHHHHHH
Confidence 56789999999999999999999999999999998542 1111111111 1346889999999999988887643
Q ss_pred ----CccEEEEccc--cc-------C--hhhhccChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEEcCccccCCCC
Q 012176 193 ----PFTHVLHLAA--QA-------G--VRYAMQNPQSYVASNIAGFVNLLEVCK----SVNPQPSIVWASSSSVYGLNT 253 (469)
Q Consensus 193 ----~~d~Vih~Aa--~~-------~--~~~~~~~~~~~~~~Nv~~~~~ll~aa~----~~~~~~~~V~~SS~~vyg~~~ 253 (469)
++|+|||||| .. . .....++.+..+++|+.++..+.+++. +.+. ++||++||...+..
T Consensus 79 ~~~g~id~lvnnAg~g~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~-g~iv~isS~~~~~~-- 155 (260)
T 2qq5_A 79 EQQGRLDVLVNNAYAGVQTILNTRNKAFWETPASMWDDINNVGLRGHYFCSVYGARLMVPAGQ-GLIVVISSPGSLQY-- 155 (260)
T ss_dssp HHTTCCCEEEECCCTTHHHHHHTTTCCTTTSCTTHHHHHHTTTTHHHHHHHHHHHHHHGGGTC-CEEEEECCGGGTSC--
T ss_pred hcCCCceEEEECCccccccccccCCCccccCCHHHHHHHHhhcchhHHHHHHHHHHHHhhcCC-cEEEEEcChhhcCC--
Confidence 5799999994 21 1 112234456788899999988777654 4444 49999999877632
Q ss_pred CCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeC
Q 012176 254 QVPFSESHRTDQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQ 330 (469)
Q Consensus 254 ~~~~~E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~ 330 (469)
.+...|+.+|.+.+.+++.++.+ +|+++++|+||.|..+.......-.... ........
T Consensus 156 -----------~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~----~~~~~~~~--- 217 (260)
T 2qq5_A 156 -----------MFNVPYGVGKAACDKLAADCAHELRRHGVSCVSLWPGIVQTELLKEHMAKEEVL----QDPVLKQF--- 217 (260)
T ss_dssp -----------CSSHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEECCCSCTTTC-------------------------
T ss_pred -----------CCCCchHHHHHHHHHHHHHHHHHhccCCeEEEEEecCccccHHHHHhhcccccc----chhHHHHH---
Confidence 23468999999999999999866 4899999999999887432110000000 00000000
Q ss_pred CCCcceEecccHHHHHHHHHHHhccC
Q 012176 331 DDREVARDFTYIDDVVKGCVGATGSG 356 (469)
Q Consensus 331 ~~~~~~~~~v~v~Dva~~~~~~~~~~ 356 (469)
......+..++|+|++++.++..+
T Consensus 218 --~~~~~~~~~pe~va~~v~~l~s~~ 241 (260)
T 2qq5_A 218 --KSAFSSAETTELSGKCVVALATDP 241 (260)
T ss_dssp ------CHHHHHHHHHHHHHHHHTCT
T ss_pred --HhhhccCCCHHHHHHHHHHHhcCc
Confidence 000112467899999999988654
|
| >1gz6_A Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MFE-2, beta-oxidation, peroxisome, SDR, steroid biosynthesis, oxidoreductase, NADP; HET: NAI; 2.38A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1zbq_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=4.7e-19 Score=174.78 Aligned_cols=269 Identities=13% Similarity=0.048 Sum_probs=174.7
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCC-----CChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhc
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSY-----YDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFD 190 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~-----~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~ 190 (469)
.++|+|+||||+|+||++++++|+++|++|++.+|.... ............... +.. +.+|+.|.++++++++
T Consensus 7 l~gk~~lVTGas~GIG~~~a~~La~~Ga~Vv~~~~~~~~~~~~R~~~~~~~~~~~l~~~-~~~-~~~D~~~~~~~~~~~~ 84 (319)
T 1gz6_A 7 FDGRVVLVTGAGGGLGRAYALAFAERGALVVVNDLGGDFKGVGKGSSAADKVVEEIRRR-GGK-AVANYDSVEAGEKLVK 84 (319)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBCTTSCBCCSHHHHHHHHHHHHT-TCE-EEEECCCGGGHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCcccccccCCHHHHHHHHHHHHhh-CCe-EEEeCCCHHHHHHHHH
Confidence 678999999999999999999999999999998764211 111222222222222 222 3589999988777665
Q ss_pred cC-----CccEEEEcccccChh----hhccChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEEcCcc-ccCCCCCCC
Q 012176 191 VV-----PFTHVLHLAAQAGVR----YAMQNPQSYVASNIAGFVNLLEVC----KSVNPQPSIVWASSSS-VYGLNTQVP 256 (469)
Q Consensus 191 ~~-----~~d~Vih~Aa~~~~~----~~~~~~~~~~~~Nv~~~~~ll~aa----~~~~~~~~~V~~SS~~-vyg~~~~~~ 256 (469)
.. ++|+||||||..... ...++++..+++|+.|+.++++++ ++.+.. +||++||.. .++.
T Consensus 85 ~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g-rIV~vsS~~~~~~~----- 158 (319)
T 1gz6_A 85 TALDTFGRIDVVVNNAGILRDRSFSRISDEDWDIIQRVHLRGSFQVTRAAWDHMKKQNYG-RIIMTASASGIYGN----- 158 (319)
T ss_dssp HHHHHTSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCE-EEEEECCHHHHHCC-----
T ss_pred HHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCC-EEEEECChhhccCC-----
Confidence 32 679999999975432 234556789999999999998886 344544 999999964 4442
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCC
Q 012176 257 FSESHRTDQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDR 333 (469)
Q Consensus 257 ~~E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 333 (469)
.+...|+.+|.+.+.+++.++.+ +|+++++|+||.+ .+.... . . .
T Consensus 159 --------~~~~~Y~aSK~a~~~~~~~la~el~~~gI~vn~v~PG~~-t~~~~~--~-------------~--------~ 206 (319)
T 1gz6_A 159 --------FGQANYSAAKLGLLGLANTLVIEGRKNNIHCNTIAPNAG-SRMTET--V-------------M--------P 206 (319)
T ss_dssp --------TTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEEECC-STTTGG--G-------------S--------C
T ss_pred --------CCCHHHHHHHHHHHHHHHHHHHHhcccCEEEEEEeCCCc-cccccc--c-------------C--------C
Confidence 23568999999999999999876 4899999999987 321110 0 0 0
Q ss_pred cceEecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCCcccHHHHHHHHHHHhCCCccceeecCCCCCCCCcccCCh
Q 012176 334 EVARDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRNGDVPYTHANV 413 (469)
Q Consensus 334 ~~~~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~~vt~~el~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~d~ 413 (469)
.....++.++|+|.+++.++..+. ...|++|++.++..... .+.. +............|.
T Consensus 207 ~~~~~~~~p~dvA~~~~~l~s~~~----~~tG~~~~v~GG~~~~~---------------~~~~-~~~~~~~~~~~~~~~ 266 (319)
T 1gz6_A 207 EDLVEALKPEYVAPLVLWLCHESC----EENGGLFEVGAGWIGKL---------------RWER-TLGAIVRKRNQPMTP 266 (319)
T ss_dssp HHHHHHSCGGGTHHHHHHHTSTTC----CCCSCEEEEETTEEEEE---------------EEEE-CCCEECCBTTBCCCH
T ss_pred hhhhccCCHHHHHHHHHHHhCchh----hcCCCEEEECCCeEEEE---------------eeee-ccceeccCCCCCCCH
Confidence 111234678999999999886542 23568999988742111 0000 000000000112233
Q ss_pred HHHH-------HhcCCCccCcHHHHHHHHHHHHHHHcC
Q 012176 414 SLAY-------KDFGYKPTTDLAAGLRKFVKWYVSYYG 444 (469)
Q Consensus 414 ~ka~-------~~LG~~p~~~l~~~l~~~v~~~~~~~~ 444 (469)
+.++ +..|++...++.+.+++++++..+...
T Consensus 267 ~~~~~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (319)
T 1gz6_A 267 EAVRDNWVKICDFSNASKPKSIQESTGGIIEVLHKIDS 304 (319)
T ss_dssp HHHHHTHHHHTCCTTCBCCCCHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHhhccccccCCCchHHHHHHHHHHHhhccc
Confidence 3332 335777667899999999987755544
|
| >1d7o_A Enoyl-[acyl-carrier protein] reductase (NADH) PRE; triclosan, enoyl reductase, oxidoreductase; HET: NAD TCL; 1.90A {Brassica napus} SCOP: c.2.1.2 PDB: 1eno_A* 1enp_A* 1cwu_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=1e-18 Score=170.55 Aligned_cols=232 Identities=11% Similarity=0.020 Sum_probs=152.8
Q ss_pred CCCCEEEEEcCC--ChhHHHHHHHHHHCCCcEEEEeCCCCCC--ChhHHHHHH---HhhccCC----eEEEEec------
Q 012176 116 PNGMTVLVTGAA--GFVGSHCSLALKKRGDGVLGLDNFNSYY--DPSLKRARQ---KLLQKHQ----VFIVEGD------ 178 (469)
Q Consensus 116 ~~~~~VlVtGat--G~IG~~l~~~L~~~G~~V~~~~r~~~~~--~~~~~~~~~---~~~~~~~----v~~v~~D------ 178 (469)
.++|+++||||+ |+||++++++|+++|++|++++|..... ......... ..+.... ...+.+|
T Consensus 6 l~~k~~lVTGas~~~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (297)
T 1d7o_A 6 LRGKRAFIAGIADDNGYGWAVAKSLAAAGAEILVGTWVPALNIFETSLRRGKFDQSRVLPDGSLMEIKKVYPLDAVFDNP 85 (297)
T ss_dssp CTTCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEEEHHHHHHHHHHHHTTTTTGGGBCTTSSBCCEEEEEEECTTCCSG
T ss_pred cCCCEEEEECCCCCCChHHHHHHHHHHCCCeEEEeeccccchhhhhhhhhhHhhhhhhhccccccccccccccceeccch
Confidence 567899999999 9999999999999999999998631000 000000000 0000011 2344443
Q ss_pred --CC----C--------HHHHHHhhccC-----CccEEEEcccccC------hhhhccChHHHHHHHHHHHHHHHHHHHh
Q 012176 179 --LN----D--------APLLTKLFDVV-----PFTHVLHLAAQAG------VRYAMQNPQSYVASNIAGFVNLLEVCKS 233 (469)
Q Consensus 179 --l~----d--------~~~l~~~~~~~-----~~d~Vih~Aa~~~------~~~~~~~~~~~~~~Nv~~~~~ll~aa~~ 233 (469)
+. | +++++++++.+ ++|+||||||... .....++++..+++|+.++.++++++..
T Consensus 86 ~dv~~Dv~~~~~~~~~~~~~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~ 165 (297)
T 1d7o_A 86 EDVPEDVKANKRYAGSSNWTVQEAAECVRQDFGSIDILVHSLANGPEVSKPLLETSRKGYLAAISASSYSFVSLLSHFLP 165 (297)
T ss_dssp GGSCHHHHTSHHHHHCCCCSHHHHHHHHHHHHSCEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGG
T ss_pred hhhhhhhhccccccccCHHHHHHHHHHHHHHcCCCCEEEECCccCccCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 22 2 44555555432 5799999998532 1223445667999999999999999875
Q ss_pred cCC-CCeEEEEcCccccCCCCCCCCCCCCCCCCCC-ChHHHHHHHHHHHHHHHHHH----hCCcEEEEeecceecCCCCC
Q 012176 234 VNP-QPSIVWASSSSVYGLNTQVPFSESHRTDQPA-SLYAATKKAGEEIAHTYNHI----YGLALTGLRFFTVYGPWGRP 307 (469)
Q Consensus 234 ~~~-~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~-~~Y~~sK~~~E~~~~~~~~~----~gi~~~ilRp~~v~Gp~~~~ 307 (469)
.-. .++||++||...+.+. ... ..|+.+|.+.+.+++.++.+ +|+++++|+||.|.++....
T Consensus 166 ~m~~~g~iv~isS~~~~~~~------------~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~vn~v~PG~v~T~~~~~ 233 (297)
T 1d7o_A 166 IMNPGGASISLTYIASERII------------PGYGGGMSSAKAALESDTRVLAFEAGRKQNIRVNTISAGPLGSRAAKA 233 (297)
T ss_dssp GEEEEEEEEEEECGGGTSCC------------TTCTTTHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCBCCCSSC
T ss_pred HhccCceEEEEeccccccCC------------CCcchHHHHHHHHHHHHHHHHHHHhCcccCcEEEEEeccccccchhhh
Confidence 411 1489999997765322 122 47999999999999988865 58999999999999986543
Q ss_pred CChHHHHHHHHHcCCceEEEeeCCCCcceEecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCC
Q 012176 308 DMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTS 374 (469)
Q Consensus 308 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~ 374 (469)
......+...+....++ ..+..++|+|++++.++..... ...|+++++.++.
T Consensus 234 ~~~~~~~~~~~~~~~p~------------~r~~~pedvA~~v~~l~s~~~~---~itG~~i~vdgG~ 285 (297)
T 1d7o_A 234 IGFIDTMIEYSYNNAPI------------QKTLTADEVGNAAAFLVSPLAS---AITGATIYVDNGL 285 (297)
T ss_dssp CSHHHHHHHHHHHHSSS------------CCCBCHHHHHHHHHHHTSGGGT---TCCSCEEEESTTG
T ss_pred ccccHHHHHHhhccCCC------------CCCCCHHHHHHHHHHHhCcccc---CCCCCEEEECCCc
Confidence 32223333333332222 1246799999999988764321 2356899999875
|
| >2z5l_A Tylkr1, tylactone synthase starter module and modules 1 & 2; short-chain dehydrogenase/reductase, rossman fold; 1.95A {Streptomyces fradiae} | Back alignment and structure |
|---|
Probab=99.80 E-value=2.4e-18 Score=179.82 Aligned_cols=227 Identities=18% Similarity=0.156 Sum_probs=161.7
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCC-cEEEEeCCCCCCChhHHHHHHHhhc-cCCeEEEEecCCCHHHHHHhhccCC
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGD-GVLGLDNFNSYYDPSLKRARQKLLQ-KHQVFIVEGDLNDAPLLTKLFDVVP 193 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~-~~~v~~v~~Dl~d~~~l~~~~~~~~ 193 (469)
..+++||||||+|+||.++++.|+++|+ .|++++|+..... ........... ..++.++.+|++|.+.++++++..+
T Consensus 257 ~~~~~vLITGgtGgIG~~lA~~La~~G~~~vvl~~R~~~~~~-~~~~l~~~l~~~g~~v~~~~~Dvtd~~~v~~~~~~~~ 335 (511)
T 2z5l_A 257 QPSGTVLITGGMGAIGRRLARRLAAEGAERLVLTSRRGPEAP-GAAELAEELRGHGCEVVHAACDVAERDALAALVTAYP 335 (511)
T ss_dssp CCCSEEEEETTTSHHHHHHHHHHHHTTCSEEEEEESSGGGST-THHHHHHHHHTTTCEEEEEECCSSCHHHHHHHHHHSC
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHhCCCcEEEEEecCCcccH-HHHHHHHHHHhcCCEEEEEEeCCCCHHHHHHHHhcCC
Confidence 4578999999999999999999999999 5888888653221 11222222211 3368899999999999999998756
Q ss_pred ccEEEEcccccChh----hhccChHHHHHHHHHHHHHHHHHHHhc-CCCCeEEEEcCcc-ccCCCCCCCCCCCCCCCCCC
Q 012176 194 FTHVLHLAAQAGVR----YAMQNPQSYVASNIAGFVNLLEVCKSV-NPQPSIVWASSSS-VYGLNTQVPFSESHRTDQPA 267 (469)
Q Consensus 194 ~d~Vih~Aa~~~~~----~~~~~~~~~~~~Nv~~~~~ll~aa~~~-~~~~~~V~~SS~~-vyg~~~~~~~~E~~~~~~p~ 267 (469)
+|+||||||..... ...+..+..+++|+.|+.++.+++... +.. +||++||.+ ++|. ...
T Consensus 336 ld~VVh~AGv~~~~~~~~~~~~~~~~~~~~nv~g~~~L~~~~~~~~~~~-~~V~~SS~a~~~g~-------------~g~ 401 (511)
T 2z5l_A 336 PNAVFHTAGILDDAVIDTLSPESFETVRGAKVCGAELLHQLTADIKGLD-AFVLFSSVTGTWGN-------------AGQ 401 (511)
T ss_dssp CSEEEECCCCCCCBCGGGCCHHHHHHHHHHHHHHHHHHHHHTSSCTTCC-CEEEEEEGGGTTCC-------------TTB
T ss_pred CcEEEECCcccCCcccccCCHHHHHHHHHHHHHHHHHHHHHHhhccCCC-EEEEEeCHHhcCCC-------------CCC
Confidence 79999999975432 223345578899999999999998876 554 999999974 4542 235
Q ss_pred ChHHHHHHHHHHHHHHHHHHhCCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceEecccHHHHHH
Q 012176 268 SLYAATKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVK 347 (469)
Q Consensus 268 ~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~ 347 (469)
..|+.+|...|.+++.+.. .|+++++|+||.+.+.+.... ... ..+.. ....+++++|+++
T Consensus 402 ~~YaaaKa~ld~la~~~~~-~gi~v~sv~pG~~~~tgm~~~-~~~---~~~~~--------------~g~~~l~~e~~a~ 462 (511)
T 2z5l_A 402 GAYAAANAALDALAERRRA-AGLPATSVAWGLWGGGGMAAG-AGE---ESLSR--------------RGLRAMDPDAAVD 462 (511)
T ss_dssp HHHHHHHHHHHHHHHHHHT-TTCCCEEEEECCBCSTTCCCC-HHH---HHHHH--------------HTBCCBCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH-cCCcEEEEECCcccCCccccc-ccH---HHHHh--------------cCCCCCCHHHHHH
Confidence 7899999999999988754 599999999998844332221 111 11110 0124678999999
Q ss_pred HHHHHhccCCCCCCCCCceEEEeCCCCcccHHHHHHHHHH
Q 012176 348 GCVGATGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILEN 387 (469)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~iyni~~~~~vt~~el~~~i~~ 387 (469)
++..++..+. ..+.+.. +.|..+...+..
T Consensus 463 ~l~~al~~~~--------~~v~v~~---~d~~~~~~~~~~ 491 (511)
T 2z5l_A 463 ALLGAMGRND--------VCVTVVD---VDWERFAPATNA 491 (511)
T ss_dssp HHHHHHHHTC--------SEEEECC---BCHHHHHHHHHH
T ss_pred HHHHHHhCCC--------CEEEEEe---CCHHHHHhhhcc
Confidence 9999998763 2333443 567777665543
|
| >3mje_A AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1.36A {Streptomyces nodosus} PDB: 3mjc_A* 3mjs_A* 3mjv_A* 3mjt_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=1.9e-17 Score=171.97 Aligned_cols=207 Identities=17% Similarity=0.129 Sum_probs=150.4
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHCCC-cEEEEeCCCCCCChhHHHHHHHhh-ccCCeEEEEecCCCHHHHHHhhccC---
Q 012176 118 GMTVLVTGAAGFVGSHCSLALKKRGD-GVLGLDNFNSYYDPSLKRARQKLL-QKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (469)
Q Consensus 118 ~~~VlVtGatG~IG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~-~~~~v~~v~~Dl~d~~~l~~~~~~~--- 192 (469)
+++||||||+|+||.++++.|+++|+ .|+++.|....... ..+...... ...++.++.+|++|.++++++++..
T Consensus 239 ~~~vLITGgsgGIG~alA~~La~~Ga~~vvl~~R~~~~~~~-~~~l~~~l~~~g~~v~~~~~Dvtd~~~v~~~~~~i~~~ 317 (496)
T 3mje_A 239 HGSVLVTGGTGGIGGRVARRLAEQGAAHLVLTSRRGADAPG-AAELRAELEQLGVRVTIAACDAADREALAALLAELPED 317 (496)
T ss_dssp CSEEEEETCSSHHHHHHHHHHHHTTCSEEEEEESSGGGSTT-HHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHTCCTT
T ss_pred CCEEEEECCCCchHHHHHHHHHHCCCcEEEEEeCCCCChHH-HHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHh
Confidence 48999999999999999999999998 78888885432221 122222221 2347899999999999999999764
Q ss_pred -CccEEEEccccc-Ch----hhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcCccccCCCCCCCCCCCCCCCCC
Q 012176 193 -PFTHVLHLAAQA-GV----RYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQP 266 (469)
Q Consensus 193 -~~d~Vih~Aa~~-~~----~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p 266 (469)
++|+||||||.. .. ....+..+..+++|+.|+.++.+++...+.. +||++||.+.+-+. ..
T Consensus 318 g~ld~vVh~AGv~~~~~~l~~~t~e~~~~vl~~nv~g~~~L~~~~~~~~~~-~iV~~SS~a~~~g~------------~g 384 (496)
T 3mje_A 318 APLTAVFHSAGVAHDDAPVADLTLGQLDALMRAKLTAARHLHELTADLDLD-AFVLFSSGAAVWGS------------GG 384 (496)
T ss_dssp SCEEEEEECCCCCCSCCCTTTCCHHHHHHHHHTTHHHHHHHHHHHTTSCCS-EEEEEEEHHHHTTC------------TT
T ss_pred CCCeEEEECCcccCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHhhccCCC-EEEEEeChHhcCCC------------CC
Confidence 589999999975 21 1223445678999999999999999888765 99999996544322 34
Q ss_pred CChHHHHHHHHHHHHHHHHHHhCCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceEecccHHHHH
Q 012176 267 ASLYAATKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVV 346 (469)
Q Consensus 267 ~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva 346 (469)
...|+.+|...+.+.+++.. .|+++++|+||.+.+++...+.. ....+.+.. ...+..++.+
T Consensus 385 ~~~YaAaKa~ldala~~~~~-~Gi~v~sV~pG~w~~~gm~~~~~---~~~~l~~~g--------------~~~l~pe~~~ 446 (496)
T 3mje_A 385 QPGYAAANAYLDALAEHRRS-LGLTASSVAWGTWGEVGMATDPE---VHDRLVRQG--------------VLAMEPEHAL 446 (496)
T ss_dssp CHHHHHHHHHHHHHHHHHHH-TTCCCEEEEECEESSSCC---------CHHHHHTT--------------EEEECHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHh-cCCeEEEEECCcccCCccccChH---HHHHHHhcC--------------CCCCCHHHHH
Confidence 57899999999999887765 59999999999987765432211 111222221 1234579999
Q ss_pred HHHHHHhccC
Q 012176 347 KGCVGATGSG 356 (469)
Q Consensus 347 ~~~~~~~~~~ 356 (469)
+++..++..+
T Consensus 447 ~~l~~~l~~~ 456 (496)
T 3mje_A 447 GALDQMLEND 456 (496)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHcCC
Confidence 9999998876
|
| >1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=6.5e-19 Score=174.45 Aligned_cols=177 Identities=15% Similarity=0.103 Sum_probs=129.2
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCC-------cEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhh
Q 012176 117 NGMTVLVTGAAGFVGSHCSLALKKRGD-------GVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLF 189 (469)
Q Consensus 117 ~~~~VlVtGatG~IG~~l~~~L~~~G~-------~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~ 189 (469)
+.|+|+||||+||||++++..|+++|+ +|+++++... .......... +....+.++ +|+.+.+.+.+++
T Consensus 3 ~~mkVlVtGaaGfIG~~l~~~L~~~g~~~~~~~~ev~l~D~~~~--~~~~~g~~~d-l~~~~~~~~-~di~~~~~~~~a~ 78 (327)
T 1y7t_A 3 APVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQA--MKALEGVVME-LEDCAFPLL-AGLEATDDPKVAF 78 (327)
T ss_dssp CCEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGG--HHHHHHHHHH-HHTTTCTTE-EEEEEESCHHHHT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCCCCCCCCEEEEEeCCCc--hhhccchhhh-hhccccccc-CCeEeccChHHHh
Confidence 357899999999999999999999986 8999987321 0001111111 122122233 6777767788888
Q ss_pred ccCCccEEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcC-CCCeEEEEcCcc-ccCCCCCCCCCCCCC-CCCC
Q 012176 190 DVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVN-PQPSIVWASSSS-VYGLNTQVPFSESHR-TDQP 266 (469)
Q Consensus 190 ~~~~~d~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~-~~~~~V~~SS~~-vyg~~~~~~~~E~~~-~~~p 266 (469)
+++ |+|||+||..... ..++.+.++.|+.++.++++++++.+ ...++|++|+.. +.. +..++.. ...|
T Consensus 79 ~~~--D~Vih~Ag~~~~~--~~~~~~~~~~Nv~~t~~l~~a~~~~~~~~~~vvv~snp~~~~~-----~~~~~~~~~~~p 149 (327)
T 1y7t_A 79 KDA--DYALLVGAAPRKA--GMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVGNPANTNA-----LIAYKNAPGLNP 149 (327)
T ss_dssp TTC--SEEEECCCCCCCT--TCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHH-----HHHHHTCTTSCG
T ss_pred CCC--CEEEECCCcCCCC--CCCHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEeCCchhhhH-----HHHHHHcCCCCh
Confidence 887 9999999975432 35677899999999999999999986 554788887743 111 1111111 1246
Q ss_pred CChHHHHHHHHHHHHHHHHHHhCCcEEEEeecceecCCCC
Q 012176 267 ASLYAATKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGR 306 (469)
Q Consensus 267 ~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~Gp~~~ 306 (469)
...|+.+|+.+|++...+++.+|++++++|+++||||++.
T Consensus 150 ~~~yg~tkl~~er~~~~~a~~~g~~~~~vr~~~V~G~h~~ 189 (327)
T 1y7t_A 150 RNFTAMTRLDHNRAKAQLAKKTGTGVDRIRRMTVWGNHSS 189 (327)
T ss_dssp GGEEECCHHHHHHHHHHHHHHHTCCGGGEECCEEEBCSST
T ss_pred hheeccchHHHHHHHHHHHHHhCcChhheeeeEEEcCCCC
Confidence 6789999999999999999999999999999999998764
|
| >3oml_A GH14720P, peroxisomal multifunctional enzyme type 2, CG3415; rossmann fold, hot-DOG fold, hydratase 2 motif, peroxisomes, oxidoreductase; 2.15A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.5e-17 Score=177.97 Aligned_cols=218 Identities=14% Similarity=-0.009 Sum_probs=145.1
Q ss_pred CCCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCC-----CChhHHHHHHHhhccCCeEEEEecCCCHHHHHHh
Q 012176 114 RRPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSY-----YDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKL 188 (469)
Q Consensus 114 ~~~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~-----~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~ 188 (469)
.+.++|+|+||||+|+||++++++|+++|++|++++|.... ............... +.. +.+|++|.++++++
T Consensus 15 ~~l~gk~~lVTGas~GIG~aiA~~La~~Ga~Vv~~~r~~~~~~~~~~~~~~~~~~~~i~~~-~~~-~~~D~~d~~~~~~~ 92 (613)
T 3oml_A 15 LRYDGRVAVVTGAGAGLGREYALLFAERGAKVVVNDLGGTHSGDGASQRAADIVVDEIRKA-GGE-AVADYNSVIDGAKV 92 (613)
T ss_dssp CCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEC--------------CHHHHHHHHHHT-TCC-EEECCCCGGGHHHH
T ss_pred cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcccccccCCHHHHHHHHHHHHHh-CCe-EEEEeCCHHHHHHH
Confidence 34788999999999999999999999999999999873211 011112222222111 222 34799999988888
Q ss_pred hccC-----CccEEEEcccccCh----hhhccChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEEcCccccCCCCCC
Q 012176 189 FDVV-----PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVC----KSVNPQPSIVWASSSSVYGLNTQV 255 (469)
Q Consensus 189 ~~~~-----~~d~Vih~Aa~~~~----~~~~~~~~~~~~~Nv~~~~~ll~aa----~~~~~~~~~V~~SS~~vyg~~~~~ 255 (469)
++.+ ++|+||||||.... ....++++..+++|+.|+.++++++ ++.+. ++||++||.+.+.+.
T Consensus 93 ~~~~~~~~g~iDiLVnnAGi~~~~~~~~~~~~~~~~~~~vNl~g~~~l~~~~~p~m~~~~~-g~IV~isS~a~~~~~--- 168 (613)
T 3oml_A 93 IETAIKAFGRVDILVNNAGILRDRSLVKTSEQDWNLVNDVHLKGSFKCTQAAFPYMKKQNY-GRIIMTSSNSGIYGN--- 168 (613)
T ss_dssp HC----------CEECCCCCCCCCCSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC-EEEEEECCHHHHHCC---
T ss_pred HHHHHHHCCCCcEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CEEEEECCHHHcCCC---
Confidence 8754 68999999997543 2234556789999999999999987 44444 399999996554221
Q ss_pred CCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCC
Q 012176 256 PFSESHRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDD 332 (469)
Q Consensus 256 ~~~E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 332 (469)
.....|+.+|.+.+.+++.++.++ ||++++|+||.+-.- .. +. .
T Consensus 169 ---------~~~~~Y~asKaal~~lt~~la~e~~~~gI~vn~v~Pg~~t~~-~~--------------~~----~----- 215 (613)
T 3oml_A 169 ---------FGQVNYTAAKMGLIGLANTVAIEGARNNVLCNVIVPTAASRM-TE--------------GI----L----- 215 (613)
T ss_dssp ---------TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEC-------C--------------CC----C-----
T ss_pred ---------CCChHHHHHHHHHHHHHHHHHHHhCccCeEEEEEECCCCChh-hh--------------hc----c-----
Confidence 345789999999999999998775 899999999864211 10 00 0
Q ss_pred CcceEecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCC
Q 012176 333 REVARDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTS 374 (469)
Q Consensus 333 ~~~~~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~ 374 (469)
.......+.++|+|.+++.++.... ...|+++++.+|.
T Consensus 216 ~~~~~~~~~pedvA~~v~~L~s~~~----~~tG~~i~vdGG~ 253 (613)
T 3oml_A 216 PDILFNELKPKLIAPVVAYLCHESC----EDNGSYIESAAGW 253 (613)
T ss_dssp CHHHHTTCCGGGTHHHHHHTTSTTC----CCCSCEEEEETTE
T ss_pred chhhhhcCCHHHHHHHHHHhcCCCc----CCCceEEEECCCe
Confidence 1112234578999999998876542 3456888887764
|
| >3qp9_A Type I polyketide synthase pikaii; rossmann fold, ketoreductase, epimerization, oxidoreductase; 1.88A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.3e-16 Score=167.44 Aligned_cols=209 Identities=21% Similarity=0.160 Sum_probs=148.1
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCc-EEEE-eCCCCCC---------ChhHHHHHHHhh-ccCCeEEEEecCCCHH
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDG-VLGL-DNFNSYY---------DPSLKRARQKLL-QKHQVFIVEGDLNDAP 183 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~-V~~~-~r~~~~~---------~~~~~~~~~~~~-~~~~v~~v~~Dl~d~~ 183 (469)
..+++||||||+|+||.++++.|+++|++ |+++ +|+.... .+...+...... ....+.++.+|++|.+
T Consensus 249 ~~~~~vLITGgsgGIG~~lA~~La~~G~~~vvl~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~Dvtd~~ 328 (525)
T 3qp9_A 249 QADGTVLVTGAEEPAAAEAARRLARDGAGHLLLHTTPSGSEGAEGTSGAAEDSGLAGLVAELADLGATATVVTCDLTDAE 328 (525)
T ss_dssp CTTSEEEESSTTSHHHHHHHHHHHHHTCCEEEEEECCCC---------------CHHHHHHHHHHTCEEEEEECCTTSHH
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHHcCCCEEEEEeCCCCCCccccccccccCHHHHHHHHHHHhcCCEEEEEECCCCCHH
Confidence 46789999999999999999999999998 5555 6764220 011111111111 1347999999999999
Q ss_pred HHHHhhccC----CccEEEEcccccChh----hhccChHHHHHHHHHHHHHHHHHHHhcC-----CCCeEEEEcCccccC
Q 012176 184 LLTKLFDVV----PFTHVLHLAAQAGVR----YAMQNPQSYVASNIAGFVNLLEVCKSVN-----PQPSIVWASSSSVYG 250 (469)
Q Consensus 184 ~l~~~~~~~----~~d~Vih~Aa~~~~~----~~~~~~~~~~~~Nv~~~~~ll~aa~~~~-----~~~~~V~~SS~~vyg 250 (469)
+++++++.+ ++|+||||||..... ...++.+..+++|+.|+.++.+++.... .. +||++||.+.+.
T Consensus 329 ~v~~~~~~i~~~g~id~vVh~AGv~~~~~~~~~~~~~~~~v~~~nv~g~~~L~~~~~~~~~~~~~~~-~iV~~SS~a~~~ 407 (525)
T 3qp9_A 329 AAARLLAGVSDAHPLSAVLHLPPTVDSEPLAATDADALARVVTAKATAALHLDRLLREAAAAGGRPP-VLVLFSSVAAIW 407 (525)
T ss_dssp HHHHHHHTSCTTSCEEEEEECCCCCCCCCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHTC----CCC-EEEEEEEGGGTT
T ss_pred HHHHHHHHHHhcCCCcEEEECCcCCCCCchhhCCHHHHHHHHHHHHHHHHHHHHHhccccccCCCCC-EEEEECCHHHcC
Confidence 999999875 689999999975431 2334456789999999999999988765 43 899999976553
Q ss_pred CCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHhCCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeC
Q 012176 251 LNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQ 330 (469)
Q Consensus 251 ~~~~~~~~E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~ 330 (469)
+. .....|+.+|...+.+.+++.. .|+++++|+||.+-++ ...+.... ..+.+..
T Consensus 408 g~------------~g~~~YaaaKa~l~~lA~~~~~-~gi~v~sI~pG~~~tg-m~~~~~~~---~~~~~~g-------- 462 (525)
T 3qp9_A 408 GG------------AGQGAYAAGTAFLDALAGQHRA-DGPTVTSVAWSPWEGS-RVTEGATG---ERLRRLG-------- 462 (525)
T ss_dssp CC------------TTCHHHHHHHHHHHHHHTSCCS-SCCEEEEEEECCBTTS-GGGSSHHH---HHHHHTT--------
T ss_pred CC------------CCCHHHHHHHHHHHHHHHHHHh-CCCCEEEEECCccccc-cccchhhH---HHHHhcC--------
Confidence 22 3457899999999998877655 4999999999998322 11111111 1111111
Q ss_pred CCCcceEecccHHHHHHHHHHHhccC
Q 012176 331 DDREVARDFTYIDDVVKGCVGATGSG 356 (469)
Q Consensus 331 ~~~~~~~~~v~v~Dva~~~~~~~~~~ 356 (469)
...+..+++++++..++..+
T Consensus 463 ------~~~l~pee~a~~l~~~l~~~ 482 (525)
T 3qp9_A 463 ------LRPLAPATALTALDTALGHG 482 (525)
T ss_dssp ------BCCBCHHHHHHHHHHHHHHT
T ss_pred ------CCCCCHHHHHHHHHHHHhCC
Confidence 12466899999999999876
|
| >2ptg_A Enoyl-acyl carrier reductase; apicomplexa, enoyl (acyl-carrier-P reductase, oxidoreductase; 2.60A {Eimeria tenella} | Back alignment and structure |
|---|
Probab=99.71 E-value=6.4e-17 Score=159.51 Aligned_cols=237 Identities=14% Similarity=0.015 Sum_probs=131.6
Q ss_pred CCCCEEEEEcC--CChhHHHHHHHHHHCCCcEEEEeCCC-----------CCCChh--HH-----HHHHHhhccC----C
Q 012176 116 PNGMTVLVTGA--AGFVGSHCSLALKKRGDGVLGLDNFN-----------SYYDPS--LK-----RARQKLLQKH----Q 171 (469)
Q Consensus 116 ~~~~~VlVtGa--tG~IG~~l~~~L~~~G~~V~~~~r~~-----------~~~~~~--~~-----~~~~~~~~~~----~ 171 (469)
.++|++||||| +|+||++++++|+++|++|++++|+. ...+.. +. .......... .
T Consensus 7 l~~k~~lVTGa~~s~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (319)
T 2ptg_A 7 LRGKTAFVAGVADSNGYGWAICKLLRAAGARVLVGTWPPVYSIFKKGLESSRFEQDSFYAQEPSSKVAAEAAEKPVDLVF 86 (319)
T ss_dssp CTTCEEEEECCCCTTSHHHHHHHHHHHTTCEEEEEECHHHHHHHHC--------------------------------CC
T ss_pred cCCCEEEEeCCCCCCcHHHHHHHHHHHCCCEEEEEeccccccchhhhhhhhhhhhhhhhhcchhhhHHHHhhhccccccc
Confidence 56789999999 89999999999999999999998631 100000 00 0000000000 1
Q ss_pred eEEEEecC------------CC--------HHHHHHhhccC-----CccEEEEcccccC------hhhhccChHHHHHHH
Q 012176 172 VFIVEGDL------------ND--------APLLTKLFDVV-----PFTHVLHLAAQAG------VRYAMQNPQSYVASN 220 (469)
Q Consensus 172 v~~v~~Dl------------~d--------~~~l~~~~~~~-----~~d~Vih~Aa~~~------~~~~~~~~~~~~~~N 220 (469)
+.++..|+ +| .++++++++.+ ++|+||||||... .....++++..+++|
T Consensus 87 ~~~~~~d~~~~~~~~~~~Dv~~~~~~~~~d~~~v~~~~~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~~vN 166 (319)
T 2ptg_A 87 DKIYPLDAVFDTPQDVPPEVSSNKRYAGVGGFTISEVAEAVRADVGQIDILVHSLANGPEVTKPLLQTSRKGYLAAVSSS 166 (319)
T ss_dssp SEEEECCTTCCSGGGSCHHHHCC--CTTSCCCSHHHHHHHHHHHHSCEEEEEEEEECCSSSSSCGGGCCHHHHHHHHHHH
T ss_pred cccccccccccccccccchhcccccccccCHHHHHHHHHHHHHHcCCCCEEEECCccCCCCCCccccCCHHHHHHHHhHh
Confidence 34444442 22 33555555532 6799999999642 122334556789999
Q ss_pred HHHHHHHHHHHHhcCC-CCeEEEEcCccccCCCCCCCCCCCCCCCCCC-ChHHHHHHHHHHHHHHHHHH----hCCcEEE
Q 012176 221 IAGFVNLLEVCKSVNP-QPSIVWASSSSVYGLNTQVPFSESHRTDQPA-SLYAATKKAGEEIAHTYNHI----YGLALTG 294 (469)
Q Consensus 221 v~~~~~ll~aa~~~~~-~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~-~~Y~~sK~~~E~~~~~~~~~----~gi~~~i 294 (469)
+.++..+++++...-. .++||++||...+.+. ... ..|+.+|.+.+.+++.++.+ +||++++
T Consensus 167 ~~g~~~l~~~~~~~m~~~g~Iv~isS~~~~~~~------------~~~~~~Y~asKaal~~l~~~la~el~~~~gIrvn~ 234 (319)
T 2ptg_A 167 SYSFVSLLQHFLPLMKEGGSALALSYIASEKVI------------PGYGGGMSSAKAALESDCRTLAFEAGRARAVRVNC 234 (319)
T ss_dssp THHHHHHHHHHGGGEEEEEEEEEEEECC------------------------------THHHHHHHHHHHHHHHCCEEEE
T ss_pred hHHHHHHHHHHHHHHhcCceEEEEecccccccc------------CccchhhHHHHHHHHHHHHHHHHHhccccCeeEEE
Confidence 9999999999875411 1489999997665321 122 47999999999999988765 5899999
Q ss_pred EeecceecCCCCCCCh--HHHHHHHHHcCCceEEEeeCCCCcceEecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCC
Q 012176 295 LRFFTVYGPWGRPDMA--YFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGN 372 (469)
Q Consensus 295 lRp~~v~Gp~~~~~~~--~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~ 372 (469)
|+||.|..+....... ...+...... .. ........+..++|+|++++.++..... -..|+++.+.+
T Consensus 235 v~PG~v~T~~~~~~~~~~~~~~~~~~~~-----~~---~~~~p~~r~~~peevA~~v~~L~s~~~~---~itG~~i~vdG 303 (319)
T 2ptg_A 235 ISAGPLKSRAASAIGKAGDKTFIDLAID-----YS---EANAPLQKELESDDVGRAALFLLSPLAR---AVTGATLYVDN 303 (319)
T ss_dssp EEECCCC---------------------------------------CCCHHHHHHHHHHHTSGGGT---TCCSCEEEEST
T ss_pred EeeCCccChhhhhcccccchhhHHHHHH-----HH---hccCCCCCCCCHHHHHHHHHHHhCcccC---CccCCEEEECC
Confidence 9999998763221000 0000000000 00 0001112356899999999998865321 34568999988
Q ss_pred CCc
Q 012176 373 TSP 375 (469)
Q Consensus 373 ~~~ 375 (469)
+..
T Consensus 304 G~~ 306 (319)
T 2ptg_A 304 GLH 306 (319)
T ss_dssp TCT
T ss_pred Cce
Confidence 753
|
| >2o2s_A Enoyl-acyl carrier reductase; enoyl reductase, triclosan, rossmann fold, oxidoreductase; HET: NAD TCL; 2.60A {Toxoplasma gondii} PDB: 2o50_A 3nj8_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=1.3e-16 Score=157.14 Aligned_cols=230 Identities=15% Similarity=0.026 Sum_probs=148.1
Q ss_pred CCCCEEEEEcC--CChhHHHHHHHHHHCCCcEEEEeCCCCC------CC-hhHHHHHHHhhccCC----eEEEEecC---
Q 012176 116 PNGMTVLVTGA--AGFVGSHCSLALKKRGDGVLGLDNFNSY------YD-PSLKRARQKLLQKHQ----VFIVEGDL--- 179 (469)
Q Consensus 116 ~~~~~VlVtGa--tG~IG~~l~~~L~~~G~~V~~~~r~~~~------~~-~~~~~~~~~~~~~~~----v~~v~~Dl--- 179 (469)
.++|+++|||| +|+||++++++|+++|++|++++|.... .+ ...... .. +.... +.++.+|+
T Consensus 7 l~gk~~lVTGa~~s~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~d~~~~ 84 (315)
T 2o2s_A 7 LRGQTAFVAGVADSHGYGWAIAKHLASAGARVALGTWPPVLGLFQKSLQSGRLDED-RK-LPDGSLIEFAGVYPLDAAFD 84 (315)
T ss_dssp CTTCEEEEECCSSSSSHHHHHHHHHHTTTCEEEEEECHHHHHHHHHHHHHTTTHHH-HB-CTTSCBCCCSCEEECCTTCS
T ss_pred CCCCEEEEeCCCCCCChHHHHHHHHHHCCCEEEEEecccccchhhhhhhhhhhhhh-hh-hhcccccccccccccccccc
Confidence 56789999999 8999999999999999999999873100 00 000000 11 11111 24444443
Q ss_pred ---------CC--------HHHHHHhhccC-----CccEEEEcccccC------hhhhccChHHHHHHHHHHHHHHHHHH
Q 012176 180 ---------ND--------APLLTKLFDVV-----PFTHVLHLAAQAG------VRYAMQNPQSYVASNIAGFVNLLEVC 231 (469)
Q Consensus 180 ---------~d--------~~~l~~~~~~~-----~~d~Vih~Aa~~~------~~~~~~~~~~~~~~Nv~~~~~ll~aa 231 (469)
+| +++++++++.+ ++|+||||||... .....++++..+++|+.++..+++++
T Consensus 85 ~~~~~~~Dv~~~~~~~~~d~~~v~~~~~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~ 164 (315)
T 2o2s_A 85 KPEDVPQDIKDNKRYAGVDGYTIKEVAVKVKQDLGNIDILVHSLANGPEVTKPLLETSRKGYLAASSNSAYSFVSLLQHF 164 (315)
T ss_dssp STTSSCHHHHTCGGGSSCCCCSHHHHHHHHHHHHCSEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHH
T ss_pred ccchhhhhhhcccccccCCHHHHHHHHHHHHHhcCCCCEEEECCccCCcCCCCcccCCHHHHHHHHhhhhHHHHHHHHHH
Confidence 32 44566665532 5799999999642 12233455688999999999999998
Q ss_pred HhcCC-CCeEEEEcCccccCCCCCCCCCCCCCCCCCC-ChHHHHHHHHHHHHHHHHHH----hCCcEEEEeecceecCCC
Q 012176 232 KSVNP-QPSIVWASSSSVYGLNTQVPFSESHRTDQPA-SLYAATKKAGEEIAHTYNHI----YGLALTGLRFFTVYGPWG 305 (469)
Q Consensus 232 ~~~~~-~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~-~~Y~~sK~~~E~~~~~~~~~----~gi~~~ilRp~~v~Gp~~ 305 (469)
...-. .++||++||...+... ... ..|+.+|.+.+.+++.++.+ +|+++++|+||.|..+..
T Consensus 165 ~~~m~~~g~Iv~isS~~~~~~~------------~~~~~~Y~asKaal~~l~~~la~el~~~~gIrvn~v~PG~v~T~~~ 232 (315)
T 2o2s_A 165 GPIMNEGGSAVTLSYLAAERVV------------PGYGGGMSSAKAALESDTRTLAWEAGQKYGVRVNAISAGPLKSRAA 232 (315)
T ss_dssp STTEEEEEEEEEEEEGGGTSCC------------TTCCTTHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEECCCCCHHH
T ss_pred HHHHhcCCEEEEEecccccccC------------CCccHHHHHHHHHHHHHHHHHHHHhCcccCeEEEEEecccccchhh
Confidence 65411 1489999997765322 122 47999999999999988765 489999999999876521
Q ss_pred C-----C-CChHHHHHHHHHcCCceEEEeeCCCCcceEecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCC
Q 012176 306 R-----P-DMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTS 374 (469)
Q Consensus 306 ~-----~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~ 374 (469)
. . ..+...+...+....++ ..+..++|+|++++.++..... -..|+++.+.++.
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~p~------------~r~~~pedvA~~v~~L~s~~~~---~itG~~i~vdGG~ 292 (315)
T 2o2s_A 233 SAIGKSGEKSFIDYAIDYSYNNAPL------------RRDLHSDDVGGAALFLLSPLAR---AVSGVTLYVDNGL 292 (315)
T ss_dssp HHTTCSSSSCHHHHHHHHHHHHSSS------------CCCCCHHHHHHHHHHHTSGGGT---TCCSCEEEESTTG
T ss_pred hhccccccchhHHHHHHHHhccCCC------------CCCCCHHHHHHHHHHHhCchhc---cCcCCEEEECCCe
Confidence 0 0 01111221211111121 1245789999999998864321 3456899998875
|
| >3lt0_A Enoyl-ACP reductase; triclosan, triclosan variant, oxidoredu P.falciparum; HET: NAD FT1; 1.96A {Plasmodium falciparum} SCOP: c.2.1.2 PDB: 1v35_A* 3lsy_A* 1uh5_A* 3lt1_A* 3lt2_A* 3lt4_A* 3am4_A* 3am3_A* 3am5_A* 2o2y_A* 2oos_A* 2ol4_A* 2op0_A* 2op1_A* 1vrw_A* 1zsn_A* 1zw1_A* 1zxb_A* 1zxl_A* 2foi_A* ... | Back alignment and structure |
|---|
Probab=99.70 E-value=2.6e-17 Score=163.02 Aligned_cols=173 Identities=11% Similarity=0.041 Sum_probs=123.5
Q ss_pred CCCEEEEEcCCC--hhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHH------Hh-----hccCCeEEEEecCCCH-
Q 012176 117 NGMTVLVTGAAG--FVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQ------KL-----LQKHQVFIVEGDLNDA- 182 (469)
Q Consensus 117 ~~~~VlVtGatG--~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~------~~-----~~~~~v~~v~~Dl~d~- 182 (469)
++|+++||||++ +||.+++++|+++|++|++.+|..... ...+... .. .....+.++.+|+++.
T Consensus 1 ~~k~~lITGas~~~GIG~aiA~~la~~G~~Vv~~~~~~~~~--l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~ 78 (329)
T 3lt0_A 1 NEDICFIAGIGDTNGYGWGIAKELSKRNVKIIFGIWPPVYN--IFMKNYKNGKFDNDMIIDKDKKMNILDMLPFDASFDT 78 (329)
T ss_dssp CCCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEECHHHHH--HHHHHHHTTTTTGGGBCSSSCBCCEEEEEECCTTCSS
T ss_pred CCcEEEEECCCCCCchHHHHHHHHHHCCCEEEEEecCcccc--ccccchHHHHHHHHHHHhhcccccccccccccccccc
Confidence 368999999975 999999999999999999887632000 0000000 00 0112478889999887
Q ss_pred -H------------------HHHHhhccC-----CccEEEEcccccC---h---hhhccChHHHHHHHHHHHHHHHHHHH
Q 012176 183 -P------------------LLTKLFDVV-----PFTHVLHLAAQAG---V---RYAMQNPQSYVASNIAGFVNLLEVCK 232 (469)
Q Consensus 183 -~------------------~l~~~~~~~-----~~d~Vih~Aa~~~---~---~~~~~~~~~~~~~Nv~~~~~ll~aa~ 232 (469)
+ +++++++.+ ++|++|||||... . ....++.+.++++|+.++..+++++.
T Consensus 79 ~~~~~~~~~~~~~~Dlsd~~~v~~~~~~~~~~~g~iDilVnnAGi~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~ 158 (329)
T 3lt0_A 79 ANDIDEETKNNKRYNMLQNYTIEDVANLIHQKYGKINMLVHSLANAKEVQKDLLNTSRKGYLDALSKSSYSLISLCKYFV 158 (329)
T ss_dssp GGGCCHHHHTSHHHHTCCSCSHHHHHHHHHHHHCCEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHG
T ss_pred hhhhhhhhcccccccccCHHHHHHHHHHHHHhcCCCcEEEECCcccccCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHH
Confidence 6 666666543 6899999999631 1 12334556799999999999999876
Q ss_pred hcCC-CCeEEEEcCccccCCCCCCCCCCCCCCCCCCC-hHHHHHHHHHHHHHHHHHH----hCCcEEEEeecceecC
Q 012176 233 SVNP-QPSIVWASSSSVYGLNTQVPFSESHRTDQPAS-LYAATKKAGEEIAHTYNHI----YGLALTGLRFFTVYGP 303 (469)
Q Consensus 233 ~~~~-~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~-~Y~~sK~~~E~~~~~~~~~----~gi~~~ilRp~~v~Gp 303 (469)
..-. .++||++||...+.+. .... .|+.+|.+.+.+++.++.+ +|+++++|.||.|..+
T Consensus 159 p~m~~~g~Iv~isS~~~~~~~------------~~~~~~Y~asKaal~~~~~~la~el~~~~gI~vn~v~PG~v~T~ 223 (329)
T 3lt0_A 159 NIMKPQSSIISLTYHASQKVV------------PGYGGGMSSAKAALESDTRVLAYHLGRNYNIRINTISAGPLKSR 223 (329)
T ss_dssp GGEEEEEEEEEEECGGGTSCC------------TTCTTTHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCH
T ss_pred HHHhhCCeEEEEeCccccCCC------------CcchHHHHHHHHHHHHHHHHHHHHhCCccCeEEEEEecceeech
Confidence 5321 1489999997765322 2233 7999999999999988755 4899999999998765
|
| >2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation, peroxisome, SDR, oxido; 2.22A {Candida tropicalis} | Back alignment and structure |
|---|
Probab=99.60 E-value=1.5e-14 Score=154.29 Aligned_cols=233 Identities=14% Similarity=0.098 Sum_probs=153.6
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCC-----ChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhc
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYY-----DPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFD 190 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~-----~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~ 190 (469)
.++|+++||||++.||++++++|+++|++|++.+|..... .............. +... .+|+.|.++++++++
T Consensus 6 l~gkvalVTGas~GIG~a~A~~la~~Ga~Vv~~~~~~~~~~~gr~~~~~~~~~~~i~~~-g~~~-~~d~~d~~~~~~~v~ 83 (604)
T 2et6_A 6 FKDKVVIITGAGGGLGKYYSLEFAKLGAKVVVNDLGGALNGQGGNSKAADVVVDEIVKN-GGVA-VADYNNVLDGDKIVE 83 (604)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECC-----------CHHHHHHHHHHHT-TCEE-EEECCCTTCHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHcCCEEEEEeCCccccccccchHHHHHHHHHHHhc-CCeE-EEEcCCHHHHHHHHH
Confidence 5789999999999999999999999999999998754110 01122222222111 2222 357777765555544
Q ss_pred cC-----CccEEEEcccccCh----hhhccChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEEcCccccCCCCCCCC
Q 012176 191 VV-----PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCK----SVNPQPSIVWASSSSVYGLNTQVPF 257 (469)
Q Consensus 191 ~~-----~~d~Vih~Aa~~~~----~~~~~~~~~~~~~Nv~~~~~ll~aa~----~~~~~~~~V~~SS~~vyg~~~~~~~ 257 (469)
.+ ++|++|||||.... ..+.++++..+++|+.|+..+.+++. +.+. ++||++||....-+.
T Consensus 84 ~~~~~~G~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~a~~p~m~~~~~-G~IVnisS~ag~~~~----- 157 (604)
T 2et6_A 84 TAVKNFGTVHVIINNAGILRDASMKKMTEKDYKLVIDVHLNGAFAVTKAAWPYFQKQKY-GRIVNTSSPAGLYGN----- 157 (604)
T ss_dssp HHHHHHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-EEEEEECCHHHHHCC-----
T ss_pred HHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCC-CEEEEECCHHHcCCC-----
Confidence 32 57999999997432 22345567899999999999988754 3343 499999996543211
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCc
Q 012176 258 SESHRTDQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDRE 334 (469)
Q Consensus 258 ~E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 334 (469)
.....|+.+|.+.+.+.+.++.+ +||+++.|.|+. ..+ +.... .+ .
T Consensus 158 -------~~~~~Y~asKaal~~lt~~la~El~~~gIrVn~v~Pg~-~T~----------m~~~~---~~----------~ 206 (604)
T 2et6_A 158 -------FGQANYASAKSALLGFAETLAKEGAKYNIKANAIAPLA-RSR----------MTESI---MP----------P 206 (604)
T ss_dssp -------TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECC-CCH----------HHHTT---SC----------H
T ss_pred -------CCchHHHHHHHHHHHHHHHHHHHhCccCeEEEEEccCC-cCc----------ccccc---CC----------h
Confidence 23467999999999999999876 489999999962 111 11100 00 0
Q ss_pred ceEecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCC------------------CcccHHHHHHHHHHHhCC
Q 012176 335 VARDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNT------------------SPVPVGRLVSILENLLNT 391 (469)
Q Consensus 335 ~~~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~------------------~~vt~~el~~~i~~~~g~ 391 (469)
........+|++.+++.++.... ...|+++.+.++ ...+..++.+.+.++...
T Consensus 207 ~~~~~~~pe~vA~~v~~L~s~~~----~itG~~~~vdgG~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 277 (604)
T 2et6_A 207 PMLEKLGPEKVAPLVLYLSSAEN----ELTGQFFEVAAGFYAQIRWERSGGVLFKPDQSFTAEVVAKRFSEILDY 277 (604)
T ss_dssp HHHTTCSHHHHHHHHHHHTSSSC----CCCSCEEEEETTEEEEEEEEECCCEECCSSTTCCHHHHHHHHHHHTCC
T ss_pred hhhccCCHHHHHHHHHHHhCCcc----cCCCCEEEECCCeEEEEEEEeccceecCCCCCCCHHHHHHHHHHhhch
Confidence 01123468999999999876542 234577776554 246778888888776543
|
| >3zu3_A Putative reductase YPO4104/Y4119/YP_4011; oxidoreductase, fatty acid biosynthesis II, short-chain dehydrogenase reductase superfamily; HET: NAI; 1.80A {Yersinia pestis} PDB: 3zu4_A* 3zu5_A* 3zu2_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=1.3e-14 Score=144.82 Aligned_cols=178 Identities=12% Similarity=-0.063 Sum_probs=127.7
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHH-CCCcEEEEeCCCCCCChh--------HHHHHHHh-hccCCeEEEEecCCCHHHH
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKK-RGDGVLGLDNFNSYYDPS--------LKRARQKL-LQKHQVFIVEGDLNDAPLL 185 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~-~G~~V~~~~r~~~~~~~~--------~~~~~~~~-~~~~~v~~v~~Dl~d~~~l 185 (469)
..+|++|||||++.||.++++.|++ .|++|++++|........ ........ .....+..+.+|++|++.+
T Consensus 45 ~~gKvaLVTGas~GIG~AiA~~LA~g~GA~Vv~~~~~~~~~~~~~~~~gwyn~~~~~~~~~~~G~~a~~i~~Dvtd~~~v 124 (405)
T 3zu3_A 45 NGPKRVLVIGASTGYGLAARITAAFGCGADTLGVFFERPGEEGKPGTSGWYNSAAFHKFAAQKGLYAKSINGDAFSDEIK 124 (405)
T ss_dssp TCCSEEEEESCSSHHHHHHHHHHHHHHCCEEEEEECCCCCBTTBCCCHHHHHHHHHHHHHHHTTCCEEEEESCTTSHHHH
T ss_pred CCCCEEEEeCcchHHHHHHHHHHHHhcCCEEEEEeCCchhhhhhcccccchhHHHHHHHHHhcCCceEEEECCCCCHHHH
Confidence 5689999999999999999999999 999999999876543321 01111111 1234688899999999998
Q ss_pred HHhhccC-----CccEEEEcccccC--------------------------------------hhhhccChHHHHHHHHH
Q 012176 186 TKLFDVV-----PFTHVLHLAAQAG--------------------------------------VRYAMQNPQSYVASNIA 222 (469)
Q Consensus 186 ~~~~~~~-----~~d~Vih~Aa~~~--------------------------------------~~~~~~~~~~~~~~Nv~ 222 (469)
+++++.+ ++|++|||||... ...++++.+..+++|..
T Consensus 125 ~~~v~~i~~~~G~IDiLVNNAG~~~r~~p~tG~~~~s~~~pig~~~~~~~~d~~~~~~~~~~i~~~t~ee~~~~v~Vn~~ 204 (405)
T 3zu3_A 125 QLTIDAIKQDLGQVDQVIYSLASPRRTHPKTGEVFNSALKPIGNAVNLRGLDTDKEVIKESVLQPATQSEIDSTVAVMGG 204 (405)
T ss_dssp HHHHHHHHHHTSCEEEEEECCCCSEEECTTTCCEEECCCCCSSSCEEEEEEETTTTEEEEEEECCCCHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHcCCCCEEEEcCccccccCccccccccccccccccccccccccccccccccccCCCCCHHHHHHHHHhhch
Confidence 8888654 6899999998630 11233445577888887
Q ss_pred HHH-HHHHHHHhcCC---CCeEEEEcCccccCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHH---h-CCcEEE
Q 012176 223 GFV-NLLEVCKSVNP---QPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHI---Y-GLALTG 294 (469)
Q Consensus 223 ~~~-~ll~aa~~~~~---~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~-gi~~~i 294 (469)
+.. .+++++..... ..++|++||.+...... ......|+++|.+.+.+.+.++.+ + |+++++
T Consensus 205 ~~~~~~~~~~~~~~m~~~gG~IVniSSi~~~~~~p----------~~~~~aY~AaKaal~~ltrsLA~Ela~~~GIRVNa 274 (405)
T 3zu3_A 205 EDWQMWIDALLDAGVLAEGAQTTAFTYLGEKITHD----------IYWNGSIGAAKKDLDQKVLAIRESLAAHGGGDARV 274 (405)
T ss_dssp HHHHHHHHHHHHHTCEEEEEEEEEEECCCCGGGTT----------TTTTSHHHHHHHHHHHHHHHHHHHHHTTTSCEEEE
T ss_pred hHHHHHHHHHHHHhhhhCCcEEEEEeCchhhCcCC----------CccchHHHHHHHHHHHHHHHHHHHhCcccCeEEEE
Confidence 765 55555432211 13899999976542210 012278999999999999999876 3 899999
Q ss_pred EeecceecC
Q 012176 295 LRFFTVYGP 303 (469)
Q Consensus 295 lRp~~v~Gp 303 (469)
|.||.|-.+
T Consensus 275 VaPG~i~T~ 283 (405)
T 3zu3_A 275 SVLKAVVSQ 283 (405)
T ss_dssp EECCCCCCH
T ss_pred EEeCCCcCc
Confidence 999998765
|
| >2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation, peroxisome, SDR, oxido; 2.22A {Candida tropicalis} | Back alignment and structure |
|---|
Probab=99.60 E-value=2.6e-14 Score=152.39 Aligned_cols=212 Identities=14% Similarity=0.080 Sum_probs=142.4
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhc-cCCeEEEEecC-CCHHH-HHHhhcc
Q 012176 115 RPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQ-KHQVFIVEGDL-NDAPL-LTKLFDV 191 (469)
Q Consensus 115 ~~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~v~~v~~Dl-~d~~~-l~~~~~~ 191 (469)
..++|+++||||++.||+.+++.|+++|++|++.+|... ......... ...+..+.+|+ .+.+. ++.+.+.
T Consensus 319 ~l~gkvalVTGas~GIG~a~A~~la~~Ga~Vv~~~~~~~------~~~~~~i~~~g~~~~~~~~Dv~~~~~~~~~~~~~~ 392 (604)
T 2et6_A 319 SLKDKVVLITGAGAGLGKEYAKWFAKYGAKVVVNDFKDA------TKTVDEIKAAGGEAWPDQHDVAKDSEAIIKNVIDK 392 (604)
T ss_dssp CCTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEECSSCC------HHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHHHH
T ss_pred ccCCCeEEEECcchHHHHHHHHHHHHCCCEEEEEeCccH------HHHHHHHHhcCCeEEEEEcChHHHHHHHHHHHHHh
Confidence 357899999999999999999999999999999886321 111111111 23466677787 55443 2333332
Q ss_pred C-CccEEEEcccccCh----hhhccChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEEcCccccCCCCCCCCCCCCC
Q 012176 192 V-PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCKS----VNPQPSIVWASSSSVYGLNTQVPFSESHR 262 (469)
Q Consensus 192 ~-~~d~Vih~Aa~~~~----~~~~~~~~~~~~~Nv~~~~~ll~aa~~----~~~~~~~V~~SS~~vyg~~~~~~~~E~~~ 262 (469)
. ++|++|||||.... ....++++..+++|+.|+..+.+++.. .+. ++||++||.+.+-+.
T Consensus 393 ~G~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~~~-G~IVnisS~ag~~~~---------- 461 (604)
T 2et6_A 393 YGTIDILVNNAGILRDRSFAKMSKQEWDSVQQVHLIGTFNLSRLAWPYFVEKQF-GRIINITSTSGIYGN---------- 461 (604)
T ss_dssp HSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTC-EEEEEECCHHHHSCC----------
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCC-CEEEEECChhhccCC----------
Confidence 2 57999999997432 223455678999999999999887643 333 499999996544221
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceEec
Q 012176 263 TDQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDF 339 (469)
Q Consensus 263 ~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 339 (469)
.....|+.+|.+.+.+.+.++.+ +||+++.|.||. -.+... .... . .....
T Consensus 462 --~~~~~Y~asKaal~~lt~~la~El~~~gIrVn~v~PG~-~T~m~~------~~~~----~-------------~~~~~ 515 (604)
T 2et6_A 462 --FGQANYSSSKAGILGLSKTMAIEGAKNNIKVNIVAPHA-ETAMTL------SIMR----E-------------QDKNL 515 (604)
T ss_dssp --TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECC-CCCC--------------------------------CCS
T ss_pred --CCChhHHHHHHHHHHHHHHHHHHhCccCeEEEEEcCCC-CCcccc------ccCc----h-------------hhccC
Confidence 23467999999999999999876 489999999983 222100 0000 0 00123
Q ss_pred ccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCC
Q 012176 340 TYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNT 373 (469)
Q Consensus 340 v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~ 373 (469)
...+|+|.+++.++.... . ..|+++.+.++
T Consensus 516 ~~pe~vA~~v~~L~s~~~---~-itG~~~~vdGG 545 (604)
T 2et6_A 516 YHADQVAPLLVYLGTDDV---P-VTGETFEIGGG 545 (604)
T ss_dssp SCGGGTHHHHHHTTSTTC---C-CCSCEEEEETT
T ss_pred CCHHHHHHHHHHHhCCcc---C-CCCcEEEECCC
Confidence 468999999988775432 1 45688887776
|
| >3s8m_A Enoyl-ACP reductase; rossmann fold, oxidoreductase, NADH binding, fatty acid SYNT enoyl-ACP; 1.60A {Xanthomonas oryzae PV} | Back alignment and structure |
|---|
Probab=99.55 E-value=4.9e-14 Score=141.82 Aligned_cols=180 Identities=12% Similarity=-0.056 Sum_probs=126.3
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHH-CCCcEEEEeCCCCCCChhH-------HHHH-HH-hhccCCeEEEEecCCCHHHH
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKK-RGDGVLGLDNFNSYYDPSL-------KRAR-QK-LLQKHQVFIVEGDLNDAPLL 185 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~-~G~~V~~~~r~~~~~~~~~-------~~~~-~~-~~~~~~v~~v~~Dl~d~~~l 185 (469)
..+|++|||||++.||.++++.|++ .|++|++++|......... .... .. ......+..+.+|++|++.+
T Consensus 59 ~~gKvaLVTGASsGIG~AiA~~LA~~~GA~Vv~~~r~~~~~~~~~~~ag~~n~~a~~~~~~~~G~~a~~i~~Dvtd~~~v 138 (422)
T 3s8m_A 59 DGPKKVLVIGASSGYGLASRITAAFGFGADTLGVFFEKPGTASKAGTAGWYNSAAFDKHAKAAGLYSKSINGDAFSDAAR 138 (422)
T ss_dssp SSCSEEEEESCSSHHHHHHHHHHHHHHCCEEEEEECCCCCCSSSCCCHHHHHHHHHHHHHHHTTCCEEEEESCTTSHHHH
T ss_pred cCCCEEEEECCChHHHHHHHHHHHHhCCCEEEEEeCCchhhhhhhcccccchhHHHHHHHHhcCCcEEEEEecCCCHHHH
Confidence 3579999999999999999999999 9999999999776544311 0001 11 11234688899999999998
Q ss_pred HHhhcc------CCccEEEEccccc-------------C--h-----------------------hhhccChHHHHHHHH
Q 012176 186 TKLFDV------VPFTHVLHLAAQA-------------G--V-----------------------RYAMQNPQSYVASNI 221 (469)
Q Consensus 186 ~~~~~~------~~~d~Vih~Aa~~-------------~--~-----------------------~~~~~~~~~~~~~Nv 221 (469)
+++++. -++|++|||||.. . + ...+++.+..+++|.
T Consensus 139 ~~~v~~i~~~~~G~IDiLVNNAG~~~r~~p~~G~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~t~e~~~~~v~Vn~ 218 (422)
T 3s8m_A 139 AQVIELIKTEMGGQVDLVVYSLASPVRKLPGSGEVKRSALKPIGQTYTATAIDTNKDTIIQASIEPASAQEIEDTITVMG 218 (422)
T ss_dssp HHHHHHHHHHSCSCEEEEEECCCCSEEECTTTCCEEECCCCCSSSCEEEEEEETTTTEEEEEEECCCCHHHHHHHHHHHS
T ss_pred HHHHHHHHHHcCCCCCEEEEcCccccccccccccccccccccccccccccccccccccccccccCCCCHHHHHHHHHhhc
Confidence 877753 2579999999862 0 0 112334445677776
Q ss_pred HHHH-HHHHHHHhcCC---CCeEEEEcCccccCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEE
Q 012176 222 AGFV-NLLEVCKSVNP---QPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTG 294 (469)
Q Consensus 222 ~~~~-~ll~aa~~~~~---~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~i 294 (469)
.+.. .+++++...+. ..+||++||.+..-.... .....|+++|.+.+.+.+.++.++ ||++++
T Consensus 219 ~~~~~~~~~a~~~~~m~~~gG~IVniSSi~g~~~~p~----------~~~~aY~ASKaAl~~lTrsLA~Ela~~GIRVNa 288 (422)
T 3s8m_A 219 GQDWELWIDALEGAGVLADGARSVAFSYIGTEITWPI----------YWHGALGKAKVDLDRTAQRLNARLAKHGGGANV 288 (422)
T ss_dssp SHHHHHHHHHHHHTTCEEEEEEEEEEEECCCGGGHHH----------HTSHHHHHHHHHHHHHHHHHHHHHHTTTCEEEE
T ss_pred hhHHHHHHHHHHHHHHhhCCCEEEEEeCchhhccCCC----------ccchHHHHHHHHHHHHHHHHHHHhCccCEEEEE
Confidence 6654 55665543221 138999999764321100 112679999999999999998774 899999
Q ss_pred EeecceecCCC
Q 012176 295 LRFFTVYGPWG 305 (469)
Q Consensus 295 lRp~~v~Gp~~ 305 (469)
|.||.|-.+..
T Consensus 289 VaPG~i~T~~~ 299 (422)
T 3s8m_A 289 AVLKSVVTQAS 299 (422)
T ss_dssp EEECCCCCTTG
T ss_pred EEcCCCcChhh
Confidence 99999987744
|
| >3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH, oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora spinosa} | Back alignment and structure |
|---|
Probab=99.53 E-value=3.5e-14 Score=155.84 Aligned_cols=171 Identities=22% Similarity=0.211 Sum_probs=130.4
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHH-HCCCc-EEEEeCCCCCCChhHHHHHHHhh-ccCCeEEEEecCCCHHHHHHhhccC
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALK-KRGDG-VLGLDNFNSYYDPSLKRARQKLL-QKHQVFIVEGDLNDAPLLTKLFDVV 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~-~~G~~-V~~~~r~~~~~~~~~~~~~~~~~-~~~~v~~v~~Dl~d~~~l~~~~~~~ 192 (469)
..++++|||||+|.||..+++.|. ++|++ |++++|+....+. ..+...... ....+.++.+|++|.++++++++.+
T Consensus 528 ~~~~~~lItGg~~GlG~aiA~~la~~~Ga~~vvl~~R~~~~~~~-~~~~~~~l~~~G~~v~~~~~Dvsd~~~v~~~~~~~ 606 (795)
T 3slk_A 528 DAAGTVLVTGGTGALGAEVARHLVIERGVRNLVLVSRRGPAASG-AAELVAQLTAYGAEVSLQACDVADRETLAKVLASI 606 (795)
T ss_dssp CTTSEEEEETTTSHHHHHHHHHHHHTSSCCEEEEEESSGGGSTT-HHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHTS
T ss_pred ccccceeeccCCCCcHHHHHHHHHHHcCCcEEEEeccCccchHH-HHHHHHHHHhcCCcEEEEEeecCCHHHHHHHHHHH
Confidence 467899999999999999999999 78985 8899987432222 122222221 2346899999999999999998765
Q ss_pred ----CccEEEEcccccCh----hhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcCccccCCCCCCCCCCCCCCC
Q 012176 193 ----PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTD 264 (469)
Q Consensus 193 ----~~d~Vih~Aa~~~~----~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~ 264 (469)
++|+||||||.... ..+.++.+..+++|+.|+.++.+++... - +||++||.+.+-+.
T Consensus 607 ~~~~~id~lVnnAGv~~~~~~~~~t~e~~~~~~~~nv~G~~~l~~~~~~~--l-~iV~~SS~ag~~g~------------ 671 (795)
T 3slk_A 607 PDEHPLTAVVHAAGVLDDGVSESLTVERLDQVLRPKVDGARNLLELIDPD--V-ALVLFSSVSGVLGS------------ 671 (795)
T ss_dssp CTTSCEEEEEECCCCCCCCCGGGCCHHHHHHHHCCCCCHHHHHHHHSCTT--S-EEEEEEETHHHHTC------------
T ss_pred HHhCCCEEEEECCCcCCCCchhhCCHHHHHHHHHHHHHHHHHHHHHHhhC--C-EEEEEccHHhcCCC------------
Confidence 68999999997432 2234555678999999999999988332 2 89999997554322
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHhCCcEEEEeecceecC
Q 012176 265 QPASLYAATKKAGEEIAHTYNHIYGLALTGLRFFTVYGP 303 (469)
Q Consensus 265 ~p~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~Gp 303 (469)
..+..|+++|...+.+.+++.. .|++++.|.||.+-.+
T Consensus 672 ~g~~~YaAaka~~~alA~~~~~-~Gi~v~sI~pG~v~t~ 709 (795)
T 3slk_A 672 GGQGNYAAANSFLDALAQQRQS-RGLPTRSLAWGPWAEH 709 (795)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHH-TTCCEEEEEECCCSCC
T ss_pred CCCHHHHHHHHHHHHHHHHHHH-cCCeEEEEECCeECcc
Confidence 3457899999999888887765 4999999999988754
|
| >2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; 3.1A {Thermomyces lanuginosus} PDB: 2uvb_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=1.3e-13 Score=158.73 Aligned_cols=206 Identities=15% Similarity=0.078 Sum_probs=140.7
Q ss_pred CCCCEEEEEcCCCh-hHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHH---Hhhc--cCCeEEEEecCCCHHHHHHhh
Q 012176 116 PNGMTVLVTGAAGF-VGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQ---KLLQ--KHQVFIVEGDLNDAPLLTKLF 189 (469)
Q Consensus 116 ~~~~~VlVtGatG~-IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~---~~~~--~~~v~~v~~Dl~d~~~l~~~~ 189 (469)
.++++||||||+|+ ||.++++.|+++|++|+++++... ........ ..+. ...+.++.+|++|.+++++++
T Consensus 650 L~gKvaLVTGASgGgIG~aIAr~LA~~GA~VVl~~~R~~---~~l~~~a~eL~~el~~~G~~v~~v~~DVsd~esV~alv 726 (1878)
T 2uv9_A 650 FQGKHALMTGAGAGSIGAEVLQGLLSGGAKVIVTTSRFS---RQVTEYYQGIYARCGARGSQLVVVPFNQGSKQDVEALV 726 (1878)
T ss_dssp CTTCEEEEESCCTTSHHHHHHHHHHHTTCEEEEEESSCC---HHHHHHHHHHHHHHCCTTCEEEEEECCTTCHHHHHHHH
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHHHCCCEEEEEecCCh---HHHHHHHHHHHHHhhccCCeEEEEEcCCCCHHHHHHHH
Confidence 67899999999999 999999999999999999864322 11111111 1111 346889999999999998887
Q ss_pred cc-------C--CccEEEEcccccChh--hh-----ccChHHHHHHHHHHHHHHHHHHHh--c-C--CCCeEEEEcCccc
Q 012176 190 DV-------V--PFTHVLHLAAQAGVR--YA-----MQNPQSYVASNIAGFVNLLEVCKS--V-N--PQPSIVWASSSSV 248 (469)
Q Consensus 190 ~~-------~--~~d~Vih~Aa~~~~~--~~-----~~~~~~~~~~Nv~~~~~ll~aa~~--~-~--~~~~~V~~SS~~v 248 (469)
+. . ++|+||||||..... .. .++.+.++++|+.++..++++++. . . ..++||++||...
T Consensus 727 ~~i~~~~~~~G~~IDiLVnNAGi~~~~~~l~d~t~~~e~~~~vl~vNv~g~~~l~~a~~~lp~M~~~~~G~IVnISS~ag 806 (1878)
T 2uv9_A 727 NYIYDTKNGLGWDLDYVVPFAAIPENGREIDSIDSKSELAHRIMLTNLLRLLGAIKTQKKERGYETRPAQVILPLSPNHG 806 (1878)
T ss_dssp HHHHCSSSSCCCCCSEEEECCCCCCTTCCTTCCCHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCSCCEEECCEECSCSS
T ss_pred HHHHHhhcccCCCCcEEEeCcccccCCCChhhcCcCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhCCCCEEEEEcchhh
Confidence 63 2 489999999975332 11 234567999999999999877432 1 1 1138999999654
Q ss_pred cCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHH-h--CCcEEEEeeccee-cCCCCCCChHHHHHHHHHcCCce
Q 012176 249 YGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHI-Y--GLALTGLRFFTVY-GPWGRPDMAYFFFTKDILQGKTI 324 (469)
Q Consensus 249 yg~~~~~~~~E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~-~--gi~~~ilRp~~v~-Gp~~~~~~~~~~~~~~~~~g~~~ 324 (469)
+.+ ....|+.+|.+.+.+++.+..+ + +|+++.|+||.|- .+.... ...........++
T Consensus 807 ~~g--------------g~~aYaASKAAL~aLt~~laAeEla~~IrVNaVaPG~V~gT~m~~~----~~~~~~~~~~~pl 868 (1878)
T 2uv9_A 807 TFG--------------NDGLYSESKLALETLFNRWYSESWGNYLTICGAVIGWTRGTGLMSA----NNLVAEGVEKLGV 868 (1878)
T ss_dssp SSS--------------CCSSHHHHHHHHTTHHHHHHHSTTTTTEEEEEEEECCBCCTTSCSH----HHHTHHHHHTTTC
T ss_pred ccC--------------CchHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEEecceecCccccc----chhhHHHHHhcCC
Confidence 321 1357999999999998766543 2 3999999999987 442221 1111112222111
Q ss_pred EEEeeCCCCcceEecccHHHHHHHHHHHhcc
Q 012176 325 DVYKTQDDREVARDFTYIDDVVKGCVGATGS 355 (469)
Q Consensus 325 ~~~~~~~~~~~~~~~v~v~Dva~~~~~~~~~ 355 (469)
.+...+|+|.+++.++..
T Consensus 869 -------------r~~sPeEVA~avlfLaSd 886 (1878)
T 2uv9_A 869 -------------RTFSQQEMAFNLLGLMAP 886 (1878)
T ss_dssp -------------CCBCHHHHHHHHHHHHSH
T ss_pred -------------CCCCHHHHHHHHHHHhCC
Confidence 133789999999888754
|
| >4eue_A Putative reductase CA_C0462; TER, biofuel, synthetic biology, catalytic mechan substrate specificity, oxidoreductase; HET: NAI; 2.00A {Clostridium acetobutylicum} PDB: 4euf_A* 4euh_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=1.9e-13 Score=138.49 Aligned_cols=178 Identities=11% Similarity=-0.086 Sum_probs=124.5
Q ss_pred CCCCEEEEEcCCChhHHH--HHHHHHHCCCcEEEEeCCCCCCChh--------HHHHHHHh-hccCCeEEEEecCCCHHH
Q 012176 116 PNGMTVLVTGAAGFVGSH--CSLALKKRGDGVLGLDNFNSYYDPS--------LKRARQKL-LQKHQVFIVEGDLNDAPL 184 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~--l~~~L~~~G~~V~~~~r~~~~~~~~--------~~~~~~~~-~~~~~v~~v~~Dl~d~~~ 184 (469)
..+|++|||||++.||.+ ++++|.++|++|++++|........ ........ .....+..+.+|++|.++
T Consensus 58 ~~gK~aLVTGassGIG~A~aia~ala~~Ga~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~Dvtd~~~ 137 (418)
T 4eue_A 58 RGPKKVLIVGASSGFGLATRISVAFGGPEAHTIGVSYETGATDRRIGTAGWYNNIFFKEFAKKKGLVAKNFIEDAFSNET 137 (418)
T ss_dssp CCCSEEEEESCSSHHHHHHHHHHHHSSSCCEEEEEECCCCCCSSCCCCHHHHHHHHHHHHHHHTTCCEEEEESCTTCHHH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHHhCCCEEEEEecCcchhhhcccccccchHHHHHHHHHHcCCcEEEEEeeCCCHHH
Confidence 678999999999999999 9999999999999999976554321 11111111 123468899999999999
Q ss_pred HHHhhccC-----CccEEEEccccc-------------C--h-----------------------hhhccChHHHHHHHH
Q 012176 185 LTKLFDVV-----PFTHVLHLAAQA-------------G--V-----------------------RYAMQNPQSYVASNI 221 (469)
Q Consensus 185 l~~~~~~~-----~~d~Vih~Aa~~-------------~--~-----------------------~~~~~~~~~~~~~Nv 221 (469)
++++++.+ ++|++|||||.. . + ....+..+..+++|.
T Consensus 138 v~~~v~~i~~~~G~IDiLVnNAG~~~r~~~~~g~~~~s~~~p~~~~~~~~~~d~~~~~~~~~~~~~~t~e~~~~~~~vn~ 217 (418)
T 4eue_A 138 KDKVIKYIKDEFGKIDLFVYSLAAPRRKDYKTGNVYTSRIKTILGDFEGPTIDVERDEITLKKVSSASIEEIEETRKVMG 217 (418)
T ss_dssp HHHHHHHHHHTTCCEEEEEECCCCSEEECTTTCCEEECCCCBSSSCEEEEEEETTTTEEEEEEECBCCHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHcCCCCEEEECCcccccccccccccccccccccccccccccccccccccccccccCCCHHHHHHHHHHhh
Confidence 88887643 689999999863 0 0 012233345666666
Q ss_pred HHHH-HHHHHHHhcCC---CCeEEEEcCccccCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHH----hCCcEE
Q 012176 222 AGFV-NLLEVCKSVNP---QPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHI----YGLALT 293 (469)
Q Consensus 222 ~~~~-~ll~aa~~~~~---~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~----~gi~~~ 293 (469)
.+.. .+++++...+. ..++|++||.+..... +......|+.+|.+.+.+.+.++.+ +|++++
T Consensus 218 ~~~~~~~~~~l~~~~~~~~gg~IV~iSSi~~~~~~----------p~~~~~aY~ASKaAL~~ltrsLA~ELa~~~GIrVN 287 (418)
T 4eue_A 218 GEDWQEWCEELLYEDCFSDKATTIAYSYIGSPRTY----------KIYREGTIGIAKKDLEDKAKLINEKLNRVIGGRAF 287 (418)
T ss_dssp SHHHHHHHHHHHHTTCEEEEEEEEEEECCCCGGGT----------TTTTTSHHHHHHHHHHHHHHHHHHHHHHHHSCEEE
T ss_pred HHHHHHHHHHHHHHhhhcCCcEEEEEeCchhcCCC----------CccccHHHHHHHHHHHHHHHHHHHHhCCccCeEEE
Confidence 5554 45555443322 1379999997543211 1012278999999999999988865 589999
Q ss_pred EEeecceecC
Q 012176 294 GLRFFTVYGP 303 (469)
Q Consensus 294 ilRp~~v~Gp 303 (469)
+|.||.|-.+
T Consensus 288 ~V~PG~v~T~ 297 (418)
T 4eue_A 288 VSVNKALVTK 297 (418)
T ss_dssp EEECCCCCCH
T ss_pred EEECCcCcCh
Confidence 9999998775
|
| >2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_A* 3hmj_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=1.8e-13 Score=158.07 Aligned_cols=206 Identities=14% Similarity=0.091 Sum_probs=141.6
Q ss_pred CCCCCEEEEEcCCCh-hHHHHHHHHHHCCCcEEEEe-CCCCCCChhHHHHHHHh---hc--cCCeEEEEecCCCHHHHHH
Q 012176 115 RPNGMTVLVTGAAGF-VGSHCSLALKKRGDGVLGLD-NFNSYYDPSLKRARQKL---LQ--KHQVFIVEGDLNDAPLLTK 187 (469)
Q Consensus 115 ~~~~~~VlVtGatG~-IG~~l~~~L~~~G~~V~~~~-r~~~~~~~~~~~~~~~~---~~--~~~v~~v~~Dl~d~~~l~~ 187 (469)
..++|+||||||+|+ ||.++++.|+++|++|++++ |+.. ......... .. ...+.++.+|++|.+++++
T Consensus 672 ~l~gKvaLVTGASsGgIG~aIA~~La~~GA~Vvl~~~R~~~----~l~~~~~eL~~~~~~~g~~v~~v~~DVsd~~sV~a 747 (1887)
T 2uv8_A 672 TFKDKYVLITGAGKGSIGAEVLQGLLQGGAKVVVTTSRFSK----QVTDYYQSIYAKYGAKGSTLIVVPFNQGSKQDVEA 747 (1887)
T ss_dssp CCTTCEEEEESCCSSSHHHHHHHHHHHTTCEEEEEESSCCH----HHHHHHHHHHHHHCCTTCEEEEEECCTTCHHHHHH
T ss_pred CCCCCEEEEECCCCcHHHHHHHHHHHHCCCEEEEEecCCHH----HHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHH
Confidence 367899999999998 99999999999999999985 5332 122111111 11 3468899999999999888
Q ss_pred hhcc---------C--CccEEEEcccccChh--hh-----ccChHHHHHHHHHHHHHHHHHHHhcCC-----CCeEEEEc
Q 012176 188 LFDV---------V--PFTHVLHLAAQAGVR--YA-----MQNPQSYVASNIAGFVNLLEVCKSVNP-----QPSIVWAS 244 (469)
Q Consensus 188 ~~~~---------~--~~d~Vih~Aa~~~~~--~~-----~~~~~~~~~~Nv~~~~~ll~aa~~~~~-----~~~~V~~S 244 (469)
+++. . ++|+||||||..... .. .++.+.++++|+.++..++++++.... .++||++|
T Consensus 748 lv~~i~~~~~~~G~G~~LDiLVNNAGi~~~~~~l~d~t~~~e~~~~v~~vNv~g~~~l~~a~~~lp~m~~~~~G~IVnIS 827 (1887)
T 2uv8_A 748 LIEFIYDTEKNGGLGWDLDAIIPFAAIPEQGIELEHIDSKSEFAHRIMLTNILRMMGCVKKQKSARGIETRPAQVILPMS 827 (1887)
T ss_dssp HHHHHHSCTTTTSCCCCCSEEEECCCCCCCSBCGGGCCHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCCSCCEEEEEEEC
T ss_pred HHHHHHHhccccccCCCCeEEEECCCcCCCCCChhhCCcchHHHHHHHHHHHHHHHHHHHHHHhhhhhhhCCCCEEEEEc
Confidence 8752 1 489999999975332 11 234568999999999999998743221 13899999
Q ss_pred CccccCCCCCCCCCCCCCCCCCCChHHHHHHHHHHH-HHHHHHHhC--CcEEEEeecceec-CCCCCCChHHHHHHHHHc
Q 012176 245 SSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEI-AHTYNHIYG--LALTGLRFFTVYG-PWGRPDMAYFFFTKDILQ 320 (469)
Q Consensus 245 S~~vyg~~~~~~~~E~~~~~~p~~~Y~~sK~~~E~~-~~~~~~~~g--i~~~ilRp~~v~G-p~~~~~~~~~~~~~~~~~ 320 (469)
|...+.+ ....|+.+|.+.+.+ .+.++.+++ |++++|+||+|.| +........... ..
T Consensus 828 S~ag~~g--------------g~~aYaASKAAL~~Lttr~lA~ela~~IrVNaV~PG~V~tT~m~~~~~~~~~~----~~ 889 (1887)
T 2uv8_A 828 PNHGTFG--------------GDGMYSESKLSLETLFNRWHSESWANQLTVCGAIIGWTRGTGLMSANNIIAEG----IE 889 (1887)
T ss_dssp SCTTCSS--------------CBTTHHHHHHHGGGHHHHHHHSSCTTTEEEEEEEECCEECC-----CCTTHHH----HH
T ss_pred ChHhccC--------------CCchHHHHHHHHHHHHHHHHHHHhCCCeEEEEEEecccccccccccchhHHHH----HH
Confidence 9765421 235799999999998 666665543 9999999999985 321111111111 11
Q ss_pred CCceEEEeeCCCCcceEecccHHHHHHHHHHHhcc
Q 012176 321 GKTIDVYKTQDDREVARDFTYIDDVVKGCVGATGS 355 (469)
Q Consensus 321 g~~~~~~~~~~~~~~~~~~v~v~Dva~~~~~~~~~ 355 (469)
..++ .+..++|+|.+++.++..
T Consensus 890 ~~pl-------------r~~sPEEVA~avlfLaSd 911 (1887)
T 2uv8_A 890 KMGV-------------RTFSQKEMAFNLLGLLTP 911 (1887)
T ss_dssp TTSC-------------CCEEHHHHHHHHHGGGSH
T ss_pred hcCC-------------CCCCHHHHHHHHHHHhCC
Confidence 1111 233689999999988754
|
| >2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.47 E-value=2.8e-14 Score=159.70 Aligned_cols=174 Identities=16% Similarity=0.129 Sum_probs=124.2
Q ss_pred CCCCCEEEEEcCCCh-hHHHHHHHHHHCCCcEEEE-eCCCCCCChhHHHHHHHhh-ccCCeEEEEecCCCHHHHHHhhcc
Q 012176 115 RPNGMTVLVTGAAGF-VGSHCSLALKKRGDGVLGL-DNFNSYYDPSLKRARQKLL-QKHQVFIVEGDLNDAPLLTKLFDV 191 (469)
Q Consensus 115 ~~~~~~VlVtGatG~-IG~~l~~~L~~~G~~V~~~-~r~~~~~~~~~~~~~~~~~-~~~~v~~v~~Dl~d~~~l~~~~~~ 191 (469)
..++|+||||||+|+ ||.++++.|+++|++|+++ .|................. ....+.++.+|++|.++++++++.
T Consensus 473 sL~GKvALVTGASgGGIGrAIAr~LA~~GA~VVL~~~R~~e~lee~a~eL~ael~a~Ga~V~vV~~DVTD~esVeaLVe~ 552 (1688)
T 2pff_A 473 TFKDKYVLITGAGKGSIGAEVLQGLLQGGAKVVVTTSRFSKQVTDYYQSIYAKYGAKGSTLIVVPFNQGSKQDVEALIEF 552 (1688)
T ss_dssp CCCSCCEEECSCSSSSTHHHHHHHHHHHTCEEEEEESSCSTTTTTHHHHTTTTTCCTTCEEEEEECCSSSTTHHHHHHHH
T ss_pred ccCCCEEEEECCChHHHHHHHHHHHHHCcCEEEEEeCCCHHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCHHHHHHHHHH
Confidence 357889999999998 9999999999999999998 4544433222111111110 123688999999999998888753
Q ss_pred ---------C--CccEEEEcccccChh--h---h--ccChHHHHHHHHHHHHHHHHHHHh--cC---CCCeEEEEcCccc
Q 012176 192 ---------V--PFTHVLHLAAQAGVR--Y---A--MQNPQSYVASNIAGFVNLLEVCKS--VN---PQPSIVWASSSSV 248 (469)
Q Consensus 192 ---------~--~~d~Vih~Aa~~~~~--~---~--~~~~~~~~~~Nv~~~~~ll~aa~~--~~---~~~~~V~~SS~~v 248 (469)
. ++|+||||||..... . . .++.+..+++|+.++..++++++. .- ..++||++||.+.
T Consensus 553 I~e~~~~~GfG~~IDILVNNAGI~~~g~~l~dlt~s~Ed~~rv~~VNL~G~~~Ltqaa~~lp~M~krggGrIVnISSiAG 632 (1688)
T 2pff_A 553 IYDTEKNGGLGWDLDAIIPFAAIPEQGIELEHIDSKSEFAHRIMLTNILRMMGCVKKQKSARGIETRPAQVILPMSPNHG 632 (1688)
T ss_dssp HHSCTTSSSCCCCCCEEECCCCCCCCSBCSSSCTTHHHHHHHHTTHHHHHHHHHHHHHHHHHTCTTSCEEECCCCCSCTT
T ss_pred HHHhccccccCCCCeEEEECCCcCCCCCChhhCCCCHHHHHHHHHHHHHHHHHHHHHHHhChHHHhCCCCEEEEEEChHh
Confidence 2 479999999974322 1 1 334567899999999999998732 11 1138999999654
Q ss_pred cCCCCCCCCCCCCCCCCCCChHHHHHHHHHHH-HHHHHHHhC--CcEEEEeecceec
Q 012176 249 YGLNTQVPFSESHRTDQPASLYAATKKAGEEI-AHTYNHIYG--LALTGLRFFTVYG 302 (469)
Q Consensus 249 yg~~~~~~~~E~~~~~~p~~~Y~~sK~~~E~~-~~~~~~~~g--i~~~ilRp~~v~G 302 (469)
+.+ ....|+.+|.+.+.+ .+.++.+++ |+++.|+||.|.|
T Consensus 633 ~~G--------------g~saYaASKAAL~aLttrsLAeEla~~IRVNaVaPG~V~T 675 (1688)
T 2pff_A 633 TFG--------------GDGMYSESKLSLETLFNRWHSESWANQLTVCGAIIGWTRG 675 (1688)
T ss_dssp TSS--------------CBTTHHHHHHHHTHHHHHTTTSSCTTTEECCCCCCCCCCC
T ss_pred ccC--------------CchHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEEECcCcC
Confidence 321 235799999999998 444444333 8999999999985
|
| >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=1.6e-11 Score=148.68 Aligned_cols=174 Identities=20% Similarity=0.122 Sum_probs=123.8
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCc-EEEEeCCCCCCChhHHHHHHHhh-ccCCeEEEEecCCCHHHHHHhhccC-
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDG-VLGLDNFNSYYDPSLKRARQKLL-QKHQVFIVEGDLNDAPLLTKLFDVV- 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~-~~~~v~~v~~Dl~d~~~l~~~~~~~- 192 (469)
..+++++||||+|.||..+++.|+++|++ |++++|+....... ........ ....+.++.+|++|.++++++++.+
T Consensus 1882 ~~~k~~lITGgs~GIG~aia~~la~~Ga~~vvl~~R~~~~~~~~-~~~~~~l~~~g~~v~~~~~Dvsd~~~v~~~~~~~~ 1960 (2512)
T 2vz8_A 1882 PPHKSYVITGGLGGFGLQLAQWLRLRGAQKLVLTSRSGIRTGYQ-ARQVREWRRQGVQVLVSTSNASSLDGARSLITEAT 1960 (2512)
T ss_dssp CTTCEEEEESTTSHHHHHHHHHHHHTTCCEEEEECSSCCCSHHH-HHHHHHHHHTTCEEEEECCCSSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHHCCCCEEEEEeCCCcchHHH-HHHHHHHHhCCCEEEEEecCCCCHHHHHHHHHHHH
Confidence 46789999999999999999999999997 77788865433211 11111111 1346888999999999998888653
Q ss_pred ---CccEEEEcccccCh----hhhccChHHHHHHHHHHHHHHHHHHHhcC-CCCeEEEEcCccccCCCCCCCCCCCCCCC
Q 012176 193 ---PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCKSVN-PQPSIVWASSSSVYGLNTQVPFSESHRTD 264 (469)
Q Consensus 193 ---~~d~Vih~Aa~~~~----~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~-~~~~~V~~SS~~vyg~~~~~~~~E~~~~~ 264 (469)
++|+||||||.... ..+.++.+..+++|+.|+.++.+++.... ...+||++||.+..-+.
T Consensus 1961 ~~g~id~lVnnAgv~~~~~~~~~t~e~~~~~~~~nv~g~~~l~~~~~~~~~~~g~iV~iSS~ag~~g~------------ 2028 (2512)
T 2vz8_A 1961 QLGPVGGVFNLAMVLRDAVLENQTPEFFQDVSKPKYSGTANLDRVTREACPELDYFVIFSSVSCGRGN------------ 2028 (2512)
T ss_dssp HHSCEEEEEECCCC----------------CTTTTHHHHHHHHHHHHHHCTTCCEEEEECCHHHHTTC------------
T ss_pred hcCCCcEEEECCCcCCCCchhhCCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCEEEEecchhhcCCC------------
Confidence 68999999996432 23456667889999999999988876532 12489999997554322
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHhCCcEEEEeecceecC
Q 012176 265 QPASLYAATKKAGEEIAHTYNHIYGLALTGLRFFTVYGP 303 (469)
Q Consensus 265 ~p~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~Gp 303 (469)
.....|+.+|...+.+++..+.+ |++...+..|.+-+.
T Consensus 2029 ~g~~~Y~aaKaal~~l~~~rr~~-Gl~~~a~~~g~~~~~ 2066 (2512)
T 2vz8_A 2029 AGQANYGFANSAMERICEKRRHD-GLPGLAVQWGAIGDV 2066 (2512)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHT-TSCCCEEEECCBCTT
T ss_pred CCcHHHHHHHHHHHHHHHHHHHC-CCcEEEEEccCcCCc
Confidence 23568999999999999977665 999999988876543
|
| >3zen_D Fatty acid synthase; transferase, mycolic acid biosynthesis, multifunctional ENZY substrate channeling; HET: FMN; 7.50A {Mycobacterium smegmatis} PDB: 4b3y_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=3.3e-10 Score=137.24 Aligned_cols=242 Identities=13% Similarity=0.072 Sum_probs=147.0
Q ss_pred CCCCCEEEEEcCCCh-hHHHHHHHHHHCCCcEEEEeCCCCCCChh-HHHHHHHhhc-cCCeEEEEecCCCHHHHHHhhcc
Q 012176 115 RPNGMTVLVTGAAGF-VGSHCSLALKKRGDGVLGLDNFNSYYDPS-LKRARQKLLQ-KHQVFIVEGDLNDAPLLTKLFDV 191 (469)
Q Consensus 115 ~~~~~~VlVtGatG~-IG~~l~~~L~~~G~~V~~~~r~~~~~~~~-~~~~~~~~~~-~~~v~~v~~Dl~d~~~l~~~~~~ 191 (469)
..++|++|||||++. ||..+++.|+++|++|++++|+.+..... .......... ...+..+.+|++|+++++++++.
T Consensus 2133 ~l~gKvaLVTGAs~GsIG~AiA~~La~~GA~Vvi~~r~~~~~~~~~~~~l~~~l~~~G~~~~~v~~Dvtd~~~v~~lv~~ 2212 (3089)
T 3zen_D 2133 XXXDEVAVVTGASKGSIAASVVGQLLDGGATVIATTSRLDDDRLAFYKQLYRDHARFDATLWVVPANMASYSDIDKLVEW 2212 (3089)
T ss_dssp CCCCCEEEEESCCTTSHHHHHHHHHHHTTCEEEEEESCCSHHHHHHHHHHHHHHCCTTCEEEEEECCTTCHHHHHHHHHH
T ss_pred cCCCCEEEEeCCChhHHHHHHHHHHHHCCCEEEEEeCChhhhhhHHHHHHHHHHhhcCCeEEEEEecCCCHHHHHHHHHH
Confidence 378999999999999 99999999999999999999865420000 1222222211 23578899999999998887642
Q ss_pred C---------CccEEEEcccccC---------hhhhccChH----HHHHHHHHHHHHHHHHHHh----cCCCC--eEEEE
Q 012176 192 V---------PFTHVLHLAAQAG---------VRYAMQNPQ----SYVASNIAGFVNLLEVCKS----VNPQP--SIVWA 243 (469)
Q Consensus 192 ~---------~~d~Vih~Aa~~~---------~~~~~~~~~----~~~~~Nv~~~~~ll~aa~~----~~~~~--~~V~~ 243 (469)
+ ++|++|||||... .....++.+ ..+++|+.++..++.++.. .+... .+|..
T Consensus 2213 i~~~~~~~fG~IDILVNNAGi~d~~~~~a~~~~~~~~e~~~~~~e~~~~vnl~~~~~l~~~~~~~m~~~~~g~~~~ii~~ 2292 (3089)
T 3zen_D 2213 VGTEQTESLGPQSIHLKDAQTPTLLFPFAAPRVAGDMSEVGSRAEMEMKVLLWAVQRLISGLSKIGAERDIASRLHVVLP 2292 (3089)
T ss_dssp HTSCCEEEESSSEEEECCCCCCSEEEECCCCCCCCTTSCTTSHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCCEEEEEE
T ss_pred HHhhhhhhcCCCCEEEECCCcccccCcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCceeEEEEE
Confidence 1 4799999999611 011223333 3488999999888877543 22211 22222
Q ss_pred cCccccCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHH--h--CCcEEEEeecceecCCC-CCCChHHHHHHHH
Q 012176 244 SSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHI--Y--GLALTGLRFFTVYGPWG-RPDMAYFFFTKDI 318 (469)
Q Consensus 244 SS~~vyg~~~~~~~~E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~--~--gi~~~ilRp~~v~Gp~~-~~~~~~~~~~~~~ 318 (469)
.|. ..+.. .....|+.+|.+.+.+++.++.+ + +++++.+.||.|-+... ........ .
T Consensus 2293 ~ss-~~g~~------------g~~~aYsASKaAl~~LtrslA~E~~~a~~IrVn~v~PG~v~tT~l~~~~~~~~~----~ 2355 (3089)
T 3zen_D 2293 GSP-NRGMF------------GGDGAYGEAKSALDALENRWSAEKSWAERVSLAHALIGWTKGTGLMGQNDAIVS----A 2355 (3089)
T ss_dssp ECS-STTSC------------SSCSSHHHHGGGHHHHHHHHHHCSTTTTTEEEEEEECCCEECSTTTTTTTTTHH----H
T ss_pred CCc-ccccC------------CCchHHHHHHHHHHHHHHHHHhccccCCCeEEEEEeecccCCCcccccchhHHH----H
Confidence 221 11110 12346999999999999999988 4 58999999999975422 11111111 1
Q ss_pred HcCCceEEEeeCCCCcceEecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCC---cccHHHHHHHHH
Q 012176 319 LQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTS---PVPVGRLVSILE 386 (469)
Q Consensus 319 ~~g~~~~~~~~~~~~~~~~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~---~vt~~el~~~i~ 386 (469)
....+. .....+|+|.+++.++............-...+.++- ...+.++...+.
T Consensus 2356 ~~~~~~-------------r~~~PeEIA~avlfLaS~~a~~~~~~~p~~vdl~GG~~~~~~~~~~~~~~~~ 2413 (3089)
T 3zen_D 2356 VEEAGV-------------TTYTTDEMAAMLLDLCTVETKVAAAGAPVKVDLTGGLGDIKIDMAELAAKAR 2413 (3089)
T ss_dssp HGGGSC-------------BCEEHHHHHHHHHHTTSHHHHHHHHHSCEEEECSBSCSSCCCCHHHHTHHHH
T ss_pred HHhcCC-------------CCCCHHHHHHHHHHHhChhhhhHhcCCeEEEEcCCCcCcCCCCHHHHHHHHH
Confidence 111111 1126799999999876432100000000234444543 357777777553
|
| >3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi} | Back alignment and structure |
|---|
Probab=99.09 E-value=3.7e-10 Score=93.37 Aligned_cols=96 Identities=19% Similarity=0.102 Sum_probs=75.7
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCC-CcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCcc
Q 012176 117 NGMTVLVTGAAGFVGSHCSLALKKRG-DGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFT 195 (469)
Q Consensus 117 ~~~~VlVtGatG~IG~~l~~~L~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~d 195 (469)
.+|+|+|+|+ |++|+.+++.|.+.| ++|++++|+.+ +...+...++.++.+|+.|.+.+.++++++ |
T Consensus 4 ~~~~v~I~G~-G~iG~~~~~~l~~~g~~~v~~~~r~~~---------~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~--d 71 (118)
T 3ic5_A 4 MRWNICVVGA-GKIGQMIAALLKTSSNYSVTVADHDLA---------ALAVLNRMGVATKQVDAKDEAGLAKALGGF--D 71 (118)
T ss_dssp TCEEEEEECC-SHHHHHHHHHHHHCSSEEEEEEESCHH---------HHHHHHTTTCEEEECCTTCHHHHHHHTTTC--S
T ss_pred CcCeEEEECC-CHHHHHHHHHHHhCCCceEEEEeCCHH---------HHHHHHhCCCcEEEecCCCHHHHHHHHcCC--C
Confidence 3578999999 999999999999999 99999998432 111122457889999999999999999876 9
Q ss_pred EEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEc
Q 012176 196 HVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWAS 244 (469)
Q Consensus 196 ~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~S 244 (469)
+|||+++.. ...+++++|.+.|+. ++.++
T Consensus 72 ~vi~~~~~~------------------~~~~~~~~~~~~g~~--~~~~~ 100 (118)
T 3ic5_A 72 AVISAAPFF------------------LTPIIAKAAKAAGAH--YFDLT 100 (118)
T ss_dssp EEEECSCGG------------------GHHHHHHHHHHTTCE--EECCC
T ss_pred EEEECCCch------------------hhHHHHHHHHHhCCC--EEEec
Confidence 999999641 136788899999874 44343
|
| >1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A | Back alignment and structure |
|---|
Probab=99.08 E-value=1.4e-10 Score=114.35 Aligned_cols=180 Identities=12% Similarity=0.039 Sum_probs=116.6
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCC-------cEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhh
Q 012176 117 NGMTVLVTGAAGFVGSHCSLALKKRGD-------GVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLF 189 (469)
Q Consensus 117 ~~~~VlVtGatG~IG~~l~~~L~~~G~-------~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~ 189 (469)
+.|+|+||||+||||++++..|+..|. +|+++++..+............+.+. ...+ ..|+....++.+++
T Consensus 4 ~~~KI~ViGaaG~VG~~l~~~L~~~~~~~~~~~~ev~l~Di~~~~~~~~~~g~~~dl~~~-~~~~-~~~i~~~~~~~~al 81 (329)
T 1b8p_A 4 TPMRVAVTGAAGQICYSLLFRIANGDMLGKDQPVILQLLEIPNEKAQKALQGVMMEIDDC-AFPL-LAGMTAHADPMTAF 81 (329)
T ss_dssp CCEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCSCHHHHHHHHHHHHHHHTT-TCTT-EEEEEEESSHHHHT
T ss_pred CCCEEEEECCCChHHHHHHHHHHhCCCcCCCCCCEEEEEcCCCccccccchhhHHHHhhh-cccc-cCcEEEecCcHHHh
Confidence 457999999999999999999999885 79998873100000011111112221 1111 24555556678889
Q ss_pred ccCCccEEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcC-CCCeEEEEcCccccCCCCCCCCCCCCCCCCCCC
Q 012176 190 DVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVN-PQPSIVWASSSSVYGLNTQVPFSESHRTDQPAS 268 (469)
Q Consensus 190 ~~~~~d~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~-~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~ 268 (469)
+++ |+|||+||.... ...+..+....|+.+++++++++.+.+ ...+||++|...-.-.. ...+..+-.++..
T Consensus 82 ~~a--D~Vi~~ag~~~~--~g~~r~dl~~~N~~i~~~i~~~i~~~~~p~a~ii~~SNPv~~~t~---~~~~~~~~~p~~~ 154 (329)
T 1b8p_A 82 KDA--DVALLVGARPRG--PGMERKDLLEANAQIFTVQGKAIDAVASRNIKVLVVGNPANTNAY---IAMKSAPSLPAKN 154 (329)
T ss_dssp TTC--SEEEECCCCCCC--TTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHHH---HHHHTCTTSCGGG
T ss_pred CCC--CEEEEeCCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEccCchHHHHH---HHHHHcCCCCHHH
Confidence 998 999999996332 234556788999999999999999985 66689999862200000 0000000001223
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCcEEEEeecceecCCC
Q 012176 269 LYAATKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWG 305 (469)
Q Consensus 269 ~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~Gp~~ 305 (469)
.|+.+++...++...+++..|++..-++..+|+|..+
T Consensus 155 v~g~t~Ld~~r~~~~la~~lgv~~~~v~~~~v~G~Hg 191 (329)
T 1b8p_A 155 FTAMLRLDHNRALSQIAAKTGKPVSSIEKLFVWGNHS 191 (329)
T ss_dssp EEECCHHHHHHHHHHHHHHHTCCGGGEESCEEEBCSS
T ss_pred EEEeecHHHHHHHHHHHHHhCcCHHHceEEEEEeccC
Confidence 4777777788888888888898877788777888543
|
| >1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A | Back alignment and structure |
|---|
Probab=98.87 E-value=1.1e-08 Score=100.65 Aligned_cols=116 Identities=17% Similarity=0.145 Sum_probs=81.9
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCC--CcEEEEeCCCCCCChhHHHHHHHhhcc-CCeEEEEecCCCHHHHHHhhccCC
Q 012176 117 NGMTVLVTGAAGFVGSHCSLALKKRG--DGVLGLDNFNSYYDPSLKRARQKLLQK-HQVFIVEGDLNDAPLLTKLFDVVP 193 (469)
Q Consensus 117 ~~~~VlVtGatG~IG~~l~~~L~~~G--~~V~~~~r~~~~~~~~~~~~~~~~~~~-~~v~~v~~Dl~d~~~l~~~~~~~~ 193 (469)
++|+|+||||+|++|..++..|+.+| ++|+++++... ......+.+. ....+ .+ +.+..++.++++++
T Consensus 7 ~~mKI~ViGAaG~VG~~la~~L~~~g~~~ev~l~Di~~~------~~~~~dL~~~~~~~~v-~~-~~~t~d~~~al~ga- 77 (326)
T 1smk_A 7 PGFKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNA------PGVTADISHMDTGAVV-RG-FLGQQQLEAALTGM- 77 (326)
T ss_dssp -CEEEEEETTTSTTHHHHHHHHHHCTTEEEEEEEESSSH------HHHHHHHHTSCSSCEE-EE-EESHHHHHHHHTTC-
T ss_pred CCCEEEEECCCChHHHHHHHHHHhCCCCCEEEEEeCCCc------HhHHHHhhcccccceE-EE-EeCCCCHHHHcCCC-
Confidence 45799999999999999999999998 89999997442 1111111111 11111 22 23456678889988
Q ss_pred ccEEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcC
Q 012176 194 FTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASS 245 (469)
Q Consensus 194 ~d~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS 245 (469)
|+|||+||.... ......+....|+.+++++++++.+.+.. .+|+++|
T Consensus 78 -DvVi~~ag~~~~--~g~~r~dl~~~N~~~~~~i~~~i~~~~p~-~~viv~S 125 (326)
T 1smk_A 78 -DLIIVPAGVPRK--PGMTRDDLFKINAGIVKTLCEGIAKCCPR-AIVNLIS 125 (326)
T ss_dssp -SEEEECCCCCCC--SSCCCSHHHHHHHHHHHHHHHHHHHHCTT-SEEEECC
T ss_pred -CEEEEcCCcCCC--CCCCHHHHHHHHHHHHHHHHHHHHhhCCC-eEEEEEC
Confidence 999999996331 12334577899999999999999999876 6666665
|
| >2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A* | Back alignment and structure |
|---|
Probab=98.77 E-value=5e-08 Score=83.26 Aligned_cols=100 Identities=15% Similarity=0.138 Sum_probs=73.1
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHh-hccCCcc
Q 012176 117 NGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKL-FDVVPFT 195 (469)
Q Consensus 117 ~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~-~~~~~~d 195 (469)
.+++|+|+|+ |.+|..+++.|.+.|++|++++++.+ ........+...+.+|..|.+.+.++ ++++ |
T Consensus 5 ~~~~v~I~G~-G~iG~~~a~~l~~~g~~v~~~d~~~~---------~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~--d 72 (144)
T 2hmt_A 5 KNKQFAVIGL-GRFGGSIVKELHRMGHEVLAVDINEE---------KVNAYASYATHAVIANATEENELLSLGIRNF--E 72 (144)
T ss_dssp -CCSEEEECC-SHHHHHHHHHHHHTTCCCEEEESCHH---------HHHTTTTTCSEEEECCTTCHHHHHTTTGGGC--S
T ss_pred cCCcEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCHH---------HHHHHHHhCCEEEEeCCCCHHHHHhcCCCCC--C
Confidence 4567999998 99999999999999999999998321 12222233567888999998888776 6666 9
Q ss_pred EEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcC
Q 012176 196 HVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASS 245 (469)
Q Consensus 196 ~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS 245 (469)
+||++++.. .+.| ..+++.+++.+.. ++|..++
T Consensus 73 ~vi~~~~~~------------~~~~----~~~~~~~~~~~~~-~ii~~~~ 105 (144)
T 2hmt_A 73 YVIVAIGAN------------IQAS----TLTTLLLKELDIP-NIWVKAQ 105 (144)
T ss_dssp EEEECCCSC------------HHHH----HHHHHHHHHTTCS-EEEEECC
T ss_pred EEEECCCCc------------hHHH----HHHHHHHHHcCCC-eEEEEeC
Confidence 999998641 0122 2466777888875 7777665
|
| >1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain, oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A* | Back alignment and structure |
|---|
Probab=98.73 E-value=3.9e-08 Score=96.18 Aligned_cols=167 Identities=13% Similarity=0.131 Sum_probs=100.6
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCC--cEEEEeC--CCCCCChhHHHHH---HHh--hccCCeEEEEecCCCHHHHHHhh
Q 012176 119 MTVLVTGAAGFVGSHCSLALKKRGD--GVLGLDN--FNSYYDPSLKRAR---QKL--LQKHQVFIVEGDLNDAPLLTKLF 189 (469)
Q Consensus 119 ~~VlVtGatG~IG~~l~~~L~~~G~--~V~~~~r--~~~~~~~~~~~~~---~~~--~~~~~v~~v~~Dl~d~~~l~~~~ 189 (469)
|+|+||||+|++|++++..|+..|. ++.++++ ... ...... ... .....+.+...| +.+.+++
T Consensus 1 mKI~V~GaaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~----~~~~~~~dl~~~~~~~~~~~~i~~~~----d~l~~al 72 (313)
T 1hye_A 1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSIN----KLEGLREDIYDALAGTRSDANIYVES----DENLRII 72 (313)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHH----HHHHHHHHHHHHHTTSCCCCEEEEEE----TTCGGGG
T ss_pred CEEEEECCCChhHHHHHHHHHhCCCCCEEEEEcCCCchh----hhHHHHHHHHHhHHhcCCCeEEEeCC----cchHHHh
Confidence 5899999999999999999998875 6777876 211 011100 111 111233333322 2356678
Q ss_pred ccCCccEEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcCccccCCCCCCCCCCCCCCCCCCCh
Q 012176 190 DVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASL 269 (469)
Q Consensus 190 ~~~~~d~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~ 269 (469)
+++ |+|||+||.... ......+.+..|+.+++++++++++.+ . ++|+++|--+.-... .-... ...++...
T Consensus 73 ~ga--D~Vi~~Ag~~~~--~g~~r~dl~~~N~~i~~~i~~~i~~~~-~-~~vlv~SNPv~~~t~-~~~k~--~~~p~~rv 143 (313)
T 1hye_A 73 DES--DVVIITSGVPRK--EGMSRMDLAKTNAKIVGKYAKKIAEIC-D-TKIFVITNPVDVMTY-KALVD--SKFERNQV 143 (313)
T ss_dssp TTC--SEEEECCSCCCC--TTCCHHHHHHHHHHHHHHHHHHHHHHC-C-CEEEECSSSHHHHHH-HHHHH--HCCCTTSE
T ss_pred CCC--CEEEECCCCCCC--CCCcHHHHHHHHHHHHHHHHHHHHHhC-C-eEEEEecCcHHHHHH-HHHHh--hCcChhcE
Confidence 888 999999996321 223456789999999999999999998 6 566665522110000 00000 00123345
Q ss_pred HHH-HHHHHHHHHHHHHHHhCCcEEEEeecceecC
Q 012176 270 YAA-TKKAGEEIAHTYNHIYGLALTGLRFFTVYGP 303 (469)
Q Consensus 270 Y~~-sK~~~E~~~~~~~~~~gi~~~ilRp~~v~Gp 303 (469)
+|. +.....++...+++..|++..-++. .|+|.
T Consensus 144 iG~gt~LD~~r~~~~la~~lgv~~~~v~~-~v~G~ 177 (313)
T 1hye_A 144 FGLGTHLDSLRFKVAIAKFFGVHIDEVRT-RIIGE 177 (313)
T ss_dssp EECTTHHHHHHHHHHHHHHHTCCGGGEEC-CEEEC
T ss_pred EEeCccHHHHHHHHHHHHHhCcCHHHeEE-EEeec
Confidence 565 5555666666667767776555554 56664
|
| >4ggo_A Trans-2-enoyl-COA reductase; rossmann fold, oxidoreductase; 2.00A {Treponema denticola atcc 35405} PDB: 4ggp_A | Back alignment and structure |
|---|
Probab=98.72 E-value=1.6e-07 Score=92.89 Aligned_cols=177 Identities=11% Similarity=0.012 Sum_probs=109.5
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHH-HCCCcEEEEeCCCCCCChhH-------HHHHHH--hhccCCeEEEEecCCCHHHH
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALK-KRGDGVLGLDNFNSYYDPSL-------KRARQK--LLQKHQVFIVEGDLNDAPLL 185 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~-~~G~~V~~~~r~~~~~~~~~-------~~~~~~--~~~~~~v~~v~~Dl~d~~~l 185 (469)
..+|+||||||+..||.+.+.+|+ +.|..|+++.+..+...+.. .....+ .........+.+|+.|.+.+
T Consensus 48 ~~pK~vLVtGaSsGiGlA~AialAf~~GA~vi~v~~~~~~~~~~~atag~~~~~a~~~~i~~~G~~a~~i~~Dv~d~e~i 127 (401)
T 4ggo_A 48 KAPKNVLVLGCSNGYGLASRITAAFGYGAATIGVSFEKAGSETKYGTPGWYNNLAFDEAAKREGLYSVTIDGDAFSDEIK 127 (401)
T ss_dssp CCCCEEEEESCSSHHHHHHHHHHHHHHCCEEEEEECCCCCCSSSCCCHHHHHHHHHHHHHHHHTCCEEEEESCTTSHHHH
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHhhCCCCEEEEecCCcccccccccccchhHHHHHHHHHHcCCCceeEeCCCCCHHHH
Confidence 567999999999999999999998 67999999998776554321 111111 12244788999999999999
Q ss_pred HHhhccC-----CccEEEEcccccChhhh------------------------ccC------hHHHHHHHHHHHHH----
Q 012176 186 TKLFDVV-----PFTHVLHLAAQAGVRYA------------------------MQN------PQSYVASNIAGFVN---- 226 (469)
Q Consensus 186 ~~~~~~~-----~~d~Vih~Aa~~~~~~~------------------------~~~------~~~~~~~Nv~~~~~---- 226 (469)
+++++.. ++|+|||++|...-... ..+ .+..-+-++.+|..
T Consensus 128 ~~vi~~i~~~~G~IDiLVhS~A~~~r~~p~~g~~~~S~LKpi~~~~~~~~ldt~~~~i~~~~l~pat~eeie~T~~vMg~ 207 (401)
T 4ggo_A 128 AQVIEEAKKKGIKFDLIVYSLASPVRTDPDTGIMHKSVLKPFGKTFTGKTVDPFTGELKEISAEPANDEEAAATVKVMGG 207 (401)
T ss_dssp HHHHHHHHHTTCCEEEEEECCCCSEEECTTTCCEEECCCCCSSSCEEEEEECTTTCCEEEEEECCCCHHHHHHHHHHHSS
T ss_pred HHHHHHHHHhcCCCCEEEEecccccccCCCCCceeeeeecccccccccccccccccccccccccCCcHHHHHHHHHHHhh
Confidence 8888754 68999999996311000 000 00001112223322
Q ss_pred -----HHHHHHhcCC---CCeEEEEcCccccCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHh-CCcEEEEee
Q 012176 227 -----LLEVCKSVNP---QPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIY-GLALTGLRF 297 (469)
Q Consensus 227 -----ll~aa~~~~~---~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~-gi~~~ilRp 297 (469)
.+++....+. ..++|-+|+.+.- .. .+......+|.+|...|..++.++.+. ++++.++.+
T Consensus 208 s~~s~w~~al~~a~lla~G~siva~SYiGse---~t-------~P~Y~~G~mG~AKaaLEa~~r~La~eL~~~~a~v~v~ 277 (401)
T 4ggo_A 208 EDWERWIKQLSKEGLLEEGCITLAYSYIGPE---AT-------QALYRKGTIGKAKEHLEATAHRLNKENPSIRAFVSVN 277 (401)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEEEEEECCCCG---GG-------HHHHTTSHHHHHHHHHHHHHHHHHHHCTTEEEEEEEC
T ss_pred hHHHHHHHHHHhhhcccCCceEEEEeccCcc---ee-------ecCCCccHHHHHHHHHHHHHHHHHHhcCCCcEEEEEc
Confidence 2222233222 1268888764321 00 010112358999999999999999875 466666666
Q ss_pred cceec
Q 012176 298 FTVYG 302 (469)
Q Consensus 298 ~~v~G 302 (469)
+.+.-
T Consensus 278 ~a~vT 282 (401)
T 4ggo_A 278 KGLVT 282 (401)
T ss_dssp CCCCC
T ss_pred Ccccc
Confidence 55544
|
| >1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A* | Back alignment and structure |
|---|
Probab=98.69 E-value=2.6e-08 Score=96.18 Aligned_cols=82 Identities=16% Similarity=0.156 Sum_probs=64.3
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCcc
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFT 195 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~d 195 (469)
.++++|+||||+|++|+++++.|+++|++|++++|..+ .............++.++.+|++|.++++++++.+ |
T Consensus 117 l~gk~vlVtGaaGGiG~aia~~L~~~G~~V~i~~R~~~----~~~~l~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~--D 190 (287)
T 1lu9_A 117 VKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLD----KAQAAADSVNKRFKVNVTAAETADDASRAEAVKGA--H 190 (287)
T ss_dssp CTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHH----HHHHHHHHHHHHHTCCCEEEECCSHHHHHHHTTTC--S
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEECCHH----HHHHHHHHHHhcCCcEEEEecCCCHHHHHHHHHhC--C
Confidence 56789999999999999999999999999999999532 11111111111125678889999999999999887 9
Q ss_pred EEEEcccc
Q 012176 196 HVLHLAAQ 203 (469)
Q Consensus 196 ~Vih~Aa~ 203 (469)
+||||++.
T Consensus 191 vlVn~ag~ 198 (287)
T 1lu9_A 191 FVFTAGAI 198 (287)
T ss_dssp EEEECCCT
T ss_pred EEEECCCc
Confidence 99999975
|
| >1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A | Back alignment and structure |
|---|
Probab=98.66 E-value=1.2e-07 Score=92.27 Aligned_cols=111 Identities=16% Similarity=0.062 Sum_probs=75.9
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCC--cEEEEeC--CCCCCChhHHHHHHHhhc----cCCeEEEEecCCCHHHHHHhhc
Q 012176 119 MTVLVTGAAGFVGSHCSLALKKRGD--GVLGLDN--FNSYYDPSLKRARQKLLQ----KHQVFIVEGDLNDAPLLTKLFD 190 (469)
Q Consensus 119 ~~VlVtGatG~IG~~l~~~L~~~G~--~V~~~~r--~~~~~~~~~~~~~~~~~~----~~~v~~v~~Dl~d~~~l~~~~~ 190 (469)
|+|+||||+|++|..++..|+..|. ++.++++ ... ..+.......+ ...+.+.. + + .++++
T Consensus 1 mKI~IiGAaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~----~~~~~~~dl~~~~~~~~~~~v~~-~--~----~~a~~ 69 (303)
T 1o6z_A 1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKED----DTVGQAADTNHGIAYDSNTRVRQ-G--G----YEDTA 69 (303)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHH----HHHHHHHHHHHHHTTTCCCEEEE-C--C----GGGGT
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEcCCCChh----hHHHHHHHHHHHHhhCCCcEEEe-C--C----HHHhC
Confidence 6899999999999999999999875 6777876 321 11111111111 12344443 2 2 34577
Q ss_pred cCCccEEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcC
Q 012176 191 VVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASS 245 (469)
Q Consensus 191 ~~~~d~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS 245 (469)
++ |+|||+|+.... ......+....|+.+++++++++++.+.. .+|+++|
T Consensus 70 ~a--DvVi~~ag~~~~--~g~~r~dl~~~N~~i~~~i~~~i~~~~p~-~~viv~S 119 (303)
T 1o6z_A 70 GS--DVVVITAGIPRQ--PGQTRIDLAGDNAPIMEDIQSSLDEHNDD-YISLTTS 119 (303)
T ss_dssp TC--SEEEECCCCCCC--TTCCHHHHHHHHHHHHHHHHHHHHTTCSC-CEEEECC
T ss_pred CC--CEEEEcCCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHHCCC-cEEEEeC
Confidence 88 999999996321 12344578899999999999999999876 6666665
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=98.64 E-value=2.4e-07 Score=79.23 Aligned_cols=98 Identities=19% Similarity=0.213 Sum_probs=69.9
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHh-hccCCcc
Q 012176 117 NGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKL-FDVVPFT 195 (469)
Q Consensus 117 ~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~-~~~~~~d 195 (469)
.+++|+|+|+ |.+|+++++.|.++|++|++++++++ ....+...++.++.+|.+|++.++++ +++ +|
T Consensus 5 ~~~~v~I~G~-G~iG~~la~~L~~~g~~V~~id~~~~---------~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~--~d 72 (141)
T 3llv_A 5 GRYEYIVIGS-EAAGVGLVRELTAAGKKVLAVDKSKE---------KIELLEDEGFDAVIADPTDESFYRSLDLEG--VS 72 (141)
T ss_dssp -CCSEEEECC-SHHHHHHHHHHHHTTCCEEEEESCHH---------HHHHHHHTTCEEEECCTTCHHHHHHSCCTT--CS
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCCeEEEEECCHH---------HHHHHHHCCCcEEECCCCCHHHHHhCCccc--CC
Confidence 4568999998 99999999999999999999998432 11112234788999999999998876 334 49
Q ss_pred EEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEc
Q 012176 196 HVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWAS 244 (469)
Q Consensus 196 ~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~S 244 (469)
+||.+.+. ......++..+++.+ ..++|...
T Consensus 73 ~vi~~~~~-----------------~~~n~~~~~~a~~~~-~~~iia~~ 103 (141)
T 3llv_A 73 AVLITGSD-----------------DEFNLKILKALRSVS-DVYAIVRV 103 (141)
T ss_dssp EEEECCSC-----------------HHHHHHHHHHHHHHC-CCCEEEEE
T ss_pred EEEEecCC-----------------HHHHHHHHHHHHHhC-CceEEEEE
Confidence 99988752 112234566677777 43666544
|
| >1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=98.51 E-value=1.4e-06 Score=73.86 Aligned_cols=99 Identities=16% Similarity=0.242 Sum_probs=68.9
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHh-hccCCcc
Q 012176 117 NGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKL-FDVVPFT 195 (469)
Q Consensus 117 ~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~-~~~~~~d 195 (469)
++|+|+|+|+ |++|..+++.|.+.|++|++++|+.+ . ........++.++.+|..+.+.+.+. ++++ |
T Consensus 3 ~~m~i~IiG~-G~iG~~~a~~L~~~g~~v~~~d~~~~-------~-~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~--d 71 (140)
T 1lss_A 3 HGMYIIIAGI-GRVGYTLAKSLSEKGHDIVLIDIDKD-------I-CKKASAEIDALVINGDCTKIKTLEDAGIEDA--D 71 (140)
T ss_dssp --CEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHH-------H-HHHHHHHCSSEEEESCTTSHHHHHHTTTTTC--S
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCeEEEEECCHH-------H-HHHHHHhcCcEEEEcCCCCHHHHHHcCcccC--C
Confidence 3589999997 99999999999999999999998321 1 11111123677889999998887654 5555 9
Q ss_pred EEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEc
Q 012176 196 HVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWAS 244 (469)
Q Consensus 196 ~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~S 244 (469)
+||++.... ..| ..+.+.++..+.. ++|..+
T Consensus 72 ~vi~~~~~~-------------~~~----~~~~~~~~~~~~~-~ii~~~ 102 (140)
T 1lss_A 72 MYIAVTGKE-------------EVN----LMSSLLAKSYGIN-KTIARI 102 (140)
T ss_dssp EEEECCSCH-------------HHH----HHHHHHHHHTTCC-CEEEEC
T ss_pred EEEEeeCCc-------------hHH----HHHHHHHHHcCCC-EEEEEe
Confidence 999997531 112 2455667777765 777544
|
| >4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes} | Back alignment and structure |
|---|
Probab=98.50 E-value=5.2e-07 Score=91.37 Aligned_cols=101 Identities=19% Similarity=0.159 Sum_probs=75.2
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCC---cEEEEeCCCCCCChhHHHHHHHhhc--cCCeEEEEecCCCHHHHHHhhccCC
Q 012176 119 MTVLVTGAAGFVGSHCSLALKKRGD---GVLGLDNFNSYYDPSLKRARQKLLQ--KHQVFIVEGDLNDAPLLTKLFDVVP 193 (469)
Q Consensus 119 ~~VlVtGatG~IG~~l~~~L~~~G~---~V~~~~r~~~~~~~~~~~~~~~~~~--~~~v~~v~~Dl~d~~~l~~~~~~~~ 193 (469)
++|+|+|| |+||+.+++.|+++|. +|++.+|+.+ ........... ..++..+.+|++|.+++++++++.+
T Consensus 2 ~kVlIiGa-GgiG~~ia~~L~~~g~~~~~V~v~~r~~~----~~~~la~~l~~~~~~~~~~~~~D~~d~~~l~~~l~~~~ 76 (405)
T 4ina_A 2 AKVLQIGA-GGVGGVVAHKMAMNREVFSHITLASRTLS----KCQEIAQSIKAKGYGEIDITTVDADSIEELVALINEVK 76 (405)
T ss_dssp CEEEEECC-SHHHHHHHHHHHTCTTTCCEEEEEESCHH----HHHHHHHHHHHTTCCCCEEEECCTTCHHHHHHHHHHHC
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCceEEEEEECCHH----HHHHHHHHhhhhcCCceEEEEecCCCHHHHHHHHHhhC
Confidence 68999999 9999999999999984 8999998543 11111111111 1368899999999999999999855
Q ss_pred ccEEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEc
Q 012176 194 FTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWAS 244 (469)
Q Consensus 194 ~d~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~S 244 (469)
+|+|||+++... ...++++|.+.|+ ++|-++
T Consensus 77 ~DvVin~ag~~~------------------~~~v~~a~l~~g~--~vvD~a 107 (405)
T 4ina_A 77 PQIVLNIALPYQ------------------DLTIMEACLRTGV--PYLDTA 107 (405)
T ss_dssp CSEEEECSCGGG------------------HHHHHHHHHHHTC--CEEESS
T ss_pred CCEEEECCCccc------------------ChHHHHHHHHhCC--CEEEec
Confidence 699999997521 1467888988887 455443
|
| >1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A | Back alignment and structure |
|---|
Probab=98.48 E-value=1.1e-06 Score=90.18 Aligned_cols=106 Identities=20% Similarity=0.127 Sum_probs=75.2
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhc-cCCeEEEEecCCCHHHHHHhhccCCcc
Q 012176 117 NGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQ-KHQVFIVEGDLNDAPLLTKLFDVVPFT 195 (469)
Q Consensus 117 ~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~v~~v~~Dl~d~~~l~~~~~~~~~d 195 (469)
++++|+|+| +|++|+++++.|++.|++|++++|.. .+.. .... ..++..+.+|+.|.+++.++++++ |
T Consensus 2 ~~k~VlViG-aG~iG~~ia~~L~~~G~~V~v~~R~~-------~~a~-~la~~~~~~~~~~~Dv~d~~~l~~~l~~~--D 70 (450)
T 1ff9_A 2 ATKSVLMLG-SGFVTRPTLDVLTDSGIKVTVACRTL-------ESAK-KLSAGVQHSTPISLDVNDDAALDAEVAKH--D 70 (450)
T ss_dssp CCCEEEEEC-CSTTHHHHHHHHHTTTCEEEEEESSH-------HHHH-HTTTTCTTEEEEECCTTCHHHHHHHHTTS--S
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHhCcCEEEEEECCH-------HHHH-HHHHhcCCceEEEeecCCHHHHHHHHcCC--c
Confidence 467899998 79999999999999999999999842 1111 1111 125788899999999999999866 9
Q ss_pred EEEEcccccChhhhccChHHHHHH--H-------HHHHHHHHHHHHhcCC
Q 012176 196 HVLHLAAQAGVRYAMQNPQSYVAS--N-------IAGFVNLLEVCKSVNP 236 (469)
Q Consensus 196 ~Vih~Aa~~~~~~~~~~~~~~~~~--N-------v~~~~~ll~aa~~~~~ 236 (469)
+|||+++..... ......++. | ...+.+++++|+++|+
T Consensus 71 vVIn~a~~~~~~---~i~~a~l~~g~~vvd~~~~~~~~~~l~~aA~~aGv 117 (450)
T 1ff9_A 71 LVISLIPYTFHA---TVIKSAIRQKKHVVTTSYVSPAMMELDQAAKDAGI 117 (450)
T ss_dssp EEEECCC--CHH---HHHHHHHHHTCEEEESSCCCHHHHHTHHHHHHTTC
T ss_pred EEEECCccccch---HHHHHHHhCCCeEEEeecccHHHHHHHHHHHHCCC
Confidence 999999863211 001122221 1 2367889999999986
|
| >1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A* | Back alignment and structure |
|---|
Probab=98.32 E-value=3.5e-06 Score=82.21 Aligned_cols=113 Identities=20% Similarity=0.135 Sum_probs=79.5
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCC--CcEEEEeCCCCCCChhHHHHHHHhhcc--C-CeEEEEecCCCHHHHHHhhccCC
Q 012176 119 MTVLVTGAAGFVGSHCSLALKKRG--DGVLGLDNFNSYYDPSLKRARQKLLQK--H-QVFIVEGDLNDAPLLTKLFDVVP 193 (469)
Q Consensus 119 ~~VlVtGatG~IG~~l~~~L~~~G--~~V~~~~r~~~~~~~~~~~~~~~~~~~--~-~v~~v~~Dl~d~~~l~~~~~~~~ 193 (469)
|+|.|+||+|++|..++..|+..| ++|.++|+.. .......+.+. . .+....+ ..+++++++++
T Consensus 1 mKI~IiGa~G~VG~~la~~L~~~~~~~ev~L~Di~~------~~~~a~dL~~~~~~~~l~~~~~----t~d~~~a~~~a- 69 (314)
T 1mld_A 1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAH------TPGVAADLSHIETRATVKGYLG----PEQLPDCLKGC- 69 (314)
T ss_dssp CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSS------HHHHHHHHTTSSSSCEEEEEES----GGGHHHHHTTC-
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCcEEEEEeCCc------cHHHHHHHhccCcCceEEEecC----CCCHHHHhCCC-
Confidence 689999999999999999999888 7999999854 11111222111 1 1222111 13477788888
Q ss_pred ccEEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcC
Q 012176 194 FTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASS 245 (469)
Q Consensus 194 ~d~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS 245 (469)
|+||+++|.... ......+....|+..++.+++.+.+.+...++|++|-
T Consensus 70 -DvVvi~ag~~~~--~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~sN 118 (314)
T 1mld_A 70 -DVVVIPAGVPRK--PGMTRDDLFNTNATIVATLTAACAQHCPDAMICIISN 118 (314)
T ss_dssp -SEEEECCSCCCC--TTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSS
T ss_pred -CEEEECCCcCCC--CCCcHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEECC
Confidence 999999987432 1233456788999999999999998877667887763
|
| >3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.32 E-value=2.5e-06 Score=85.15 Aligned_cols=95 Identities=20% Similarity=0.113 Sum_probs=72.4
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCcc
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFT 195 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~d 195 (469)
..+|||+|.|| |++|+.+++.|.+ .++|++.+|..+ ... .. ...+..+..|+.|.+.+.++++++ |
T Consensus 14 g~~mkilvlGa-G~vG~~~~~~L~~-~~~v~~~~~~~~-------~~~-~~--~~~~~~~~~d~~d~~~l~~~~~~~--D 79 (365)
T 3abi_A 14 GRHMKVLILGA-GNIGRAIAWDLKD-EFDVYIGDVNNE-------NLE-KV--KEFATPLKVDASNFDKLVEVMKEF--E 79 (365)
T ss_dssp --CCEEEEECC-SHHHHHHHHHHTT-TSEEEEEESCHH-------HHH-HH--TTTSEEEECCTTCHHHHHHHHTTC--S
T ss_pred CCccEEEEECC-CHHHHHHHHHHhc-CCCeEEEEcCHH-------HHH-HH--hccCCcEEEecCCHHHHHHHHhCC--C
Confidence 45689999998 9999999998865 589999998432 111 11 236778899999999999999988 9
Q ss_pred EEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEc
Q 012176 196 HVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWAS 244 (469)
Q Consensus 196 ~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~S 244 (469)
+||++++... ...++++|.++|+ ++|=+|
T Consensus 80 vVi~~~p~~~------------------~~~v~~~~~~~g~--~yvD~s 108 (365)
T 3abi_A 80 LVIGALPGFL------------------GFKSIKAAIKSKV--DMVDVS 108 (365)
T ss_dssp EEEECCCGGG------------------HHHHHHHHHHHTC--EEEECC
T ss_pred EEEEecCCcc------------------cchHHHHHHhcCc--ceEeee
Confidence 9999986521 2468899999986 777665
|
| >1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=98.31 E-value=8.1e-06 Score=70.68 Aligned_cols=78 Identities=23% Similarity=0.370 Sum_probs=59.3
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHh-hccCCccE
Q 012176 118 GMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKL-FDVVPFTH 196 (469)
Q Consensus 118 ~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~-~~~~~~d~ 196 (469)
+++|+|+|+ |.+|+++++.|.+.|++|++++++.. ...... ... ...++.++.||.+|++.+.++ ++++ |+
T Consensus 3 ~~~vlI~G~-G~vG~~la~~L~~~g~~V~vid~~~~---~~~~~~-~~~-~~~~~~~i~gd~~~~~~l~~a~i~~a--d~ 74 (153)
T 1id1_A 3 KDHFIVCGH-SILAINTILQLNQRGQNVTVISNLPE---DDIKQL-EQR-LGDNADVIPGDSNDSSVLKKAGIDRC--RA 74 (153)
T ss_dssp CSCEEEECC-SHHHHHHHHHHHHTTCCEEEEECCCH---HHHHHH-HHH-HCTTCEEEESCTTSHHHHHHHTTTTC--SE
T ss_pred CCcEEEECC-CHHHHHHHHHHHHCCCCEEEEECCCh---HHHHHH-HHh-hcCCCeEEEcCCCCHHHHHHcChhhC--CE
Confidence 467999996 99999999999999999999998421 001111 111 134789999999999999887 7777 99
Q ss_pred EEEcccc
Q 012176 197 VLHLAAQ 203 (469)
Q Consensus 197 Vih~Aa~ 203 (469)
||-+.+.
T Consensus 75 vi~~~~~ 81 (153)
T 1id1_A 75 ILALSDN 81 (153)
T ss_dssp EEECSSC
T ss_pred EEEecCC
Confidence 9988753
|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
|---|
Probab=98.31 E-value=7.6e-06 Score=71.04 Aligned_cols=76 Identities=18% Similarity=0.245 Sum_probs=59.6
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhc-cCCeEEEEecCCCHHHHHHh-hccCC
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQ-KHQVFIVEGDLNDAPLLTKL-FDVVP 193 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~v~~v~~Dl~d~~~l~~~-~~~~~ 193 (469)
..+++|+|+|+ |.+|..+++.|.+.|++|++++|+.+. ...+. ..++.++.+|..+.+.+.++ ++++
T Consensus 17 ~~~~~v~IiG~-G~iG~~la~~L~~~g~~V~vid~~~~~---------~~~~~~~~g~~~~~~d~~~~~~l~~~~~~~a- 85 (155)
T 2g1u_A 17 QKSKYIVIFGC-GRLGSLIANLASSSGHSVVVVDKNEYA---------FHRLNSEFSGFTVVGDAAEFETLKECGMEKA- 85 (155)
T ss_dssp CCCCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCGGG---------GGGSCTTCCSEEEESCTTSHHHHHTTTGGGC-
T ss_pred cCCCcEEEECC-CHHHHHHHHHHHhCCCeEEEEECCHHH---------HHHHHhcCCCcEEEecCCCHHHHHHcCcccC-
Confidence 45689999996 999999999999999999999985431 11222 34677888999998887765 6666
Q ss_pred ccEEEEcccc
Q 012176 194 FTHVLHLAAQ 203 (469)
Q Consensus 194 ~d~Vih~Aa~ 203 (469)
|+||.+.+.
T Consensus 86 -d~Vi~~~~~ 94 (155)
T 2g1u_A 86 -DMVFAFTND 94 (155)
T ss_dssp -SEEEECSSC
T ss_pred -CEEEEEeCC
Confidence 999998764
|
| >2gk4_A Conserved hypothetical protein; alpha-beta-alpha sandwich, flavoprotein, structural genomics protein structure initiative; 1.83A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=98.25 E-value=3e-06 Score=78.36 Aligned_cols=76 Identities=17% Similarity=0.199 Sum_probs=54.0
Q ss_pred CCCEEEEEcC----------------CChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCC
Q 012176 117 NGMTVLVTGA----------------AGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLN 180 (469)
Q Consensus 117 ~~~~VlVtGa----------------tG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~ 180 (469)
.+|+|||||| +|.+|.+++++|+++|++|+++.|....... ...++..+ |+.
T Consensus 2 ~gk~vlVTgG~T~E~IDpVR~ItN~SSG~mG~aiA~~~~~~Ga~V~lv~~~~~~~~~----------~~~~~~~~--~v~ 69 (232)
T 2gk4_A 2 NAMKILVTSGGTSEAIDSVRSITNHSTGHLGKIITETLLSAGYEVCLITTKRALKPE----------PHPNLSIR--EIT 69 (232)
T ss_dssp -CCEEEEECSBCEEESSSSEEEEECCCCHHHHHHHHHHHHTTCEEEEEECTTSCCCC----------CCTTEEEE--ECC
T ss_pred CCCEEEEeCCCcccccCceeeccCCCCCHHHHHHHHHHHHCCCEEEEEeCCcccccc----------CCCCeEEE--EHh
Confidence 5799999999 9999999999999999999999985431110 01255554 455
Q ss_pred CHHH----HHHhhccCCccEEEEcccccCh
Q 012176 181 DAPL----LTKLFDVVPFTHVLHLAAQAGV 206 (469)
Q Consensus 181 d~~~----l~~~~~~~~~d~Vih~Aa~~~~ 206 (469)
..++ +.+.+..+ |++||+||....
T Consensus 70 s~~em~~~v~~~~~~~--Dili~aAAvsD~ 97 (232)
T 2gk4_A 70 NTKDLLIEMQERVQDY--QVLIHSMAVSDY 97 (232)
T ss_dssp SHHHHHHHHHHHGGGC--SEEEECSBCCSE
T ss_pred HHHHHHHHHHHhcCCC--CEEEEcCccccc
Confidence 5443 33344444 999999997543
|
| >5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD; 2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A* | Back alignment and structure |
|---|
Probab=98.24 E-value=1.1e-06 Score=86.30 Aligned_cols=118 Identities=14% Similarity=0.069 Sum_probs=79.3
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHCCC--c-----EEEEeCCCCCCChhHHHHHHHhhc--cCCeEEEEecCCCHHHHHHh
Q 012176 118 GMTVLVTGAAGFVGSHCSLALKKRGD--G-----VLGLDNFNSYYDPSLKRARQKLLQ--KHQVFIVEGDLNDAPLLTKL 188 (469)
Q Consensus 118 ~~~VlVtGatG~IG~~l~~~L~~~G~--~-----V~~~~r~~~~~~~~~~~~~~~~~~--~~~v~~v~~Dl~d~~~l~~~ 188 (469)
.++|+||||+|+||++++..|+..|. + ++++|+... ....+....++.+ .+-+. ++.......+.
T Consensus 3 ~~kV~V~GaaG~VG~~la~~L~~~~~~~e~~~~~l~L~Di~~~--~~~~~g~a~DL~~~~~~~~~----~~~~~~~~~~~ 76 (333)
T 5mdh_A 3 PIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPM--MGVLDGVLMELQDCALPLLK----DVIATDKEEIA 76 (333)
T ss_dssp CEEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGG--HHHHHHHHHHHHHTCCTTEE----EEEEESCHHHH
T ss_pred CeEEEEECCCCHHHHHHHHHHHhCCCccccCCCEEEEEeCCCc--cccchhhHhhhHhhhhcccC----CEEEcCCcHHH
Confidence 47899999999999999999998775 5 899987321 0011111222222 11121 22222335567
Q ss_pred hccCCccEEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCC-eEEEEcC
Q 012176 189 FDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQP-SIVWASS 245 (469)
Q Consensus 189 ~~~~~~d~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~-~~V~~SS 245 (469)
++++ |+||++||... -.-.+..+.++.|+..++.+++++++.+... +++.+|-
T Consensus 77 ~~da--DvVvitAg~pr--kpG~tR~dll~~N~~i~~~i~~~i~~~~~~~~~vivvsN 130 (333)
T 5mdh_A 77 FKDL--DVAILVGSMPR--RDGMERKDLLKANVKIFKCQGAALDKYAKKSVKVIVVGN 130 (333)
T ss_dssp TTTC--SEEEECCSCCC--CTTCCTTTTHHHHHHHHHHHHHHHHHHSCTTCEEEECSS
T ss_pred hCCC--CEEEEeCCCCC--CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCC
Confidence 8888 99999998632 2224556788999999999999999998764 4777764
|
| >3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=98.20 E-value=8.4e-06 Score=72.78 Aligned_cols=99 Identities=22% Similarity=0.270 Sum_probs=71.0
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHC-CCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHh--hccC
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKR-GDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKL--FDVV 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~--~~~~ 192 (469)
..+++|+|+|+ |.+|..+++.|.+. |++|++++++.+ +...+...++.++.+|.+|.+.+.++ ++++
T Consensus 37 ~~~~~v~IiG~-G~~G~~~a~~L~~~~g~~V~vid~~~~---------~~~~~~~~g~~~~~gd~~~~~~l~~~~~~~~a 106 (183)
T 3c85_A 37 PGHAQVLILGM-GRIGTGAYDELRARYGKISLGIEIREE---------AAQQHRSEGRNVISGDATDPDFWERILDTGHV 106 (183)
T ss_dssp CTTCSEEEECC-SHHHHHHHHHHHHHHCSCEEEEESCHH---------HHHHHHHTTCCEEECCTTCHHHHHTBCSCCCC
T ss_pred CCCCcEEEECC-CHHHHHHHHHHHhccCCeEEEEECCHH---------HHHHHHHCCCCEEEcCCCCHHHHHhccCCCCC
Confidence 45678999995 99999999999999 999999998432 11112234788899999999988877 6666
Q ss_pred CccEEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEE
Q 012176 193 PFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWA 243 (469)
Q Consensus 193 ~~d~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~ 243 (469)
|+||.+.+. ......++..+++.+...++|..
T Consensus 107 --d~vi~~~~~-----------------~~~~~~~~~~~~~~~~~~~ii~~ 138 (183)
T 3c85_A 107 --KLVLLAMPH-----------------HQGNQTALEQLQRRNYKGQIAAI 138 (183)
T ss_dssp --CEEEECCSS-----------------HHHHHHHHHHHHHTTCCSEEEEE
T ss_pred --CEEEEeCCC-----------------hHHHHHHHHHHHHHCCCCEEEEE
Confidence 999987653 11234455677777744355543
|
| >1u7z_A Coenzyme A biosynthesis bifunctional protein coabc; ligase; HET: PMT; 2.30A {Escherichia coli} SCOP: c.72.3.1 PDB: 1u7w_A* 1u7u_A* 1u80_A* | Back alignment and structure |
|---|
Probab=98.13 E-value=4.1e-06 Score=77.20 Aligned_cols=76 Identities=20% Similarity=0.147 Sum_probs=55.7
Q ss_pred CCCCEEEEEcC----------------CChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecC
Q 012176 116 PNGMTVLVTGA----------------AGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDL 179 (469)
Q Consensus 116 ~~~~~VlVtGa----------------tG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl 179 (469)
..+|+|||||| +|.||.+++++|+++|++|+++++... .. ...++. ..|+
T Consensus 6 l~gk~vlVTgG~T~E~iDpVR~itN~SSg~iG~aiA~~~~~~Ga~V~l~~~~~~-l~-----------~~~g~~--~~dv 71 (226)
T 1u7z_A 6 LKHLNIMITAGPTREPLDPVRYISDHSSGKMGFAIAAAAARRGANVTLVSGPVS-LP-----------TPPFVK--RVDV 71 (226)
T ss_dssp TTTCEEEEEESBCEEESSSSEEEEECCCSHHHHHHHHHHHHTTCEEEEEECSCC-CC-----------CCTTEE--EEEC
T ss_pred CCCCEEEEECCCCCcccCceeeccCCCccHHHHHHHHHHHHCCCEEEEEECCcc-cc-----------cCCCCe--EEcc
Confidence 57899999999 799999999999999999999987542 11 012343 4688
Q ss_pred CCHHHHHHhhc-cC-CccEEEEcccccC
Q 012176 180 NDAPLLTKLFD-VV-PFTHVLHLAAQAG 205 (469)
Q Consensus 180 ~d~~~l~~~~~-~~-~~d~Vih~Aa~~~ 205 (469)
.+.+++.+.+. .. ++|++|||||...
T Consensus 72 ~~~~~~~~~v~~~~~~~Dili~~Aav~d 99 (226)
T 1u7z_A 72 MTALEMEAAVNASVQQQNIFIGCAAVAD 99 (226)
T ss_dssp CSHHHHHHHHHHHGGGCSEEEECCBCCS
T ss_pred CcHHHHHHHHHHhcCCCCEEEECCcccC
Confidence 88765543332 11 3599999999754
|
| >2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.13 E-value=1e-05 Score=83.07 Aligned_cols=77 Identities=22% Similarity=0.185 Sum_probs=59.9
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHC-CCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCc
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKR-GDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPF 194 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~ 194 (469)
.++++|+|+|+ |++|+.+++.|++. |++|++++|..+ +.. ......++..+.+|+.|.+++.++++++
T Consensus 21 l~~k~VlIiGA-GgiG~aia~~L~~~~g~~V~v~~R~~~-------ka~-~la~~~~~~~~~~D~~d~~~l~~~l~~~-- 89 (467)
T 2axq_A 21 HMGKNVLLLGS-GFVAQPVIDTLAANDDINVTVACRTLA-------NAQ-ALAKPSGSKAISLDVTDDSALDKVLADN-- 89 (467)
T ss_dssp --CEEEEEECC-STTHHHHHHHHHTSTTEEEEEEESSHH-------HHH-HHHGGGTCEEEECCTTCHHHHHHHHHTS--
T ss_pred CCCCEEEEECC-hHHHHHHHHHHHhCCCCeEEEEECCHH-------HHH-HHHHhcCCcEEEEecCCHHHHHHHHcCC--
Confidence 45678999997 99999999999998 789999999422 111 1111135778889999999999999877
Q ss_pred cEEEEcccc
Q 012176 195 THVLHLAAQ 203 (469)
Q Consensus 195 d~Vih~Aa~ 203 (469)
|+|||+++.
T Consensus 90 DvVIn~tp~ 98 (467)
T 2axq_A 90 DVVISLIPY 98 (467)
T ss_dssp SEEEECSCG
T ss_pred CEEEECCch
Confidence 999999986
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=98.13 E-value=2.9e-05 Score=66.18 Aligned_cols=74 Identities=16% Similarity=0.185 Sum_probs=58.1
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHh-hccCCccE
Q 012176 118 GMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKL-FDVVPFTH 196 (469)
Q Consensus 118 ~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~-~~~~~~d~ 196 (469)
+++|+|+|+ |.+|..+++.|.+.|++|++++++.+ ....+...++.++.+|.++++.++++ ++++ |+
T Consensus 7 ~~~viIiG~-G~~G~~la~~L~~~g~~v~vid~~~~---------~~~~~~~~g~~~i~gd~~~~~~l~~a~i~~a--d~ 74 (140)
T 3fwz_A 7 CNHALLVGY-GRVGSLLGEKLLASDIPLVVIETSRT---------RVDELRERGVRAVLGNAANEEIMQLAHLECA--KW 74 (140)
T ss_dssp CSCEEEECC-SHHHHHHHHHHHHTTCCEEEEESCHH---------HHHHHHHTTCEEEESCTTSHHHHHHTTGGGC--SE
T ss_pred CCCEEEECc-CHHHHHHHHHHHHCCCCEEEEECCHH---------HHHHHHHcCCCEEECCCCCHHHHHhcCcccC--CE
Confidence 457999997 99999999999999999999998432 11122234889999999999988775 4555 99
Q ss_pred EEEcccc
Q 012176 197 VLHLAAQ 203 (469)
Q Consensus 197 Vih~Aa~ 203 (469)
||-+.+.
T Consensus 75 vi~~~~~ 81 (140)
T 3fwz_A 75 LILTIPN 81 (140)
T ss_dssp EEECCSC
T ss_pred EEEECCC
Confidence 9987653
|
| >3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=98.01 E-value=8.9e-06 Score=80.04 Aligned_cols=114 Identities=13% Similarity=0.121 Sum_probs=76.6
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCC--CcEEEEeCCCCCCChhHHHHHHHhhcc----CCeEEEEecCCCHHHHHHhh
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRG--DGVLGLDNFNSYYDPSLKRARQKLLQK----HQVFIVEGDLNDAPLLTKLF 189 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G--~~V~~~~r~~~~~~~~~~~~~~~~~~~----~~v~~v~~Dl~d~~~l~~~~ 189 (469)
+.+++|.|+|++|++|..++..++..| ++|+++|+... ..+.....+... .++.+ ..++.+++
T Consensus 6 ~~~~KV~ViGaaG~VG~~~a~~l~~~g~~~evvLiDi~~~----k~~g~a~DL~~~~~~~~~i~~-------t~d~~~al 74 (343)
T 3fi9_A 6 LTEEKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPFAV----GLEGVAEEIRHCGFEGLNLTF-------TSDIKEAL 74 (343)
T ss_dssp SCSSEEEEETTTSHHHHHHHHHHHHTTCCSCEEEECSCHH----HHHHHHHHHHHHCCTTCCCEE-------ESCHHHHH
T ss_pred cCCCEEEEECCCChHHHHHHHHHHhcCCCCEEEEEeCCch----hHHHHHHhhhhCcCCCCceEE-------cCCHHHHh
Confidence 567899999999999999999999988 58999997432 111111111111 12221 12355678
Q ss_pred ccCCccEEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCe-EEEEc
Q 012176 190 DVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPS-IVWAS 244 (469)
Q Consensus 190 ~~~~~d~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~-~V~~S 244 (469)
+++ |+||.+||.. +-......+.+..|+...+.+++.+.+.+.... ++.+|
T Consensus 75 ~dA--DvVvitaG~p--~kpG~~R~dLl~~N~~I~~~i~~~i~~~~p~a~~vlvvs 126 (343)
T 3fi9_A 75 TDA--KYIVSSGGAP--RKEGMTREDLLKGNAEIAAQLGKDIKSYCPDCKHVIIIF 126 (343)
T ss_dssp TTE--EEEEECCC---------CHHHHHHHHHHHHHHHHHHHHHHCTTCCEEEECS
T ss_pred CCC--CEEEEccCCC--CCCCCCHHHHHHHHHHHHHHHHHHHHHhccCcEEEEEec
Confidence 888 9999999862 222234567889999999999999998887643 56665
|
| >1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 | Back alignment and structure |
|---|
Probab=98.00 E-value=1.3e-05 Score=72.50 Aligned_cols=101 Identities=17% Similarity=0.133 Sum_probs=65.2
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHh---hccC
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKL---FDVV 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~---~~~~ 192 (469)
..+++|+|+||+|.||..+++.+...|++|++++|+.+ ... . ....+... ..|..+.+..+.+ ..+.
T Consensus 37 ~~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~----~~~--~---~~~~g~~~-~~d~~~~~~~~~~~~~~~~~ 106 (198)
T 1pqw_A 37 SPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDA----KRE--M---LSRLGVEY-VGDSRSVDFADEILELTDGY 106 (198)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHH----HHH--H---HHTTCCSE-EEETTCSTHHHHHHHHTTTC
T ss_pred CCCCEEEEeeCCChHHHHHHHHHHHcCCEEEEEeCCHH----HHH--H---HHHcCCCE-EeeCCcHHHHHHHHHHhCCC
Confidence 46789999999999999999999999999999998421 111 1 11113222 2477665444433 3333
Q ss_pred CccEEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcCcc
Q 012176 193 PFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSS 247 (469)
Q Consensus 193 ~~d~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS~~ 247 (469)
++|+||+++|.. .....++.++..| ++|.+++..
T Consensus 107 ~~D~vi~~~g~~------------------~~~~~~~~l~~~G---~~v~~g~~~ 140 (198)
T 1pqw_A 107 GVDVVLNSLAGE------------------AIQRGVQILAPGG---RFIELGKKD 140 (198)
T ss_dssp CEEEEEECCCTH------------------HHHHHHHTEEEEE---EEEECSCGG
T ss_pred CCeEEEECCchH------------------HHHHHHHHhccCC---EEEEEcCCC
Confidence 579999998730 1234445454443 899888754
|
| >3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.98 E-value=4.6e-05 Score=70.00 Aligned_cols=73 Identities=18% Similarity=0.231 Sum_probs=57.4
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHh-hccCCccEE
Q 012176 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKL-FDVVPFTHV 197 (469)
Q Consensus 119 ~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~-~~~~~~d~V 197 (469)
|+|+|+|+ |.+|+++++.|.+.|++|++++++.+ .. .......++.++.+|.+|++.++++ ++++ |+|
T Consensus 1 M~iiIiG~-G~~G~~la~~L~~~g~~v~vid~~~~-------~~-~~l~~~~~~~~i~gd~~~~~~l~~a~i~~a--d~v 69 (218)
T 3l4b_C 1 MKVIIIGG-ETTAYYLARSMLSRKYGVVIINKDRE-------LC-EEFAKKLKATIIHGDGSHKEILRDAEVSKN--DVV 69 (218)
T ss_dssp CCEEEECC-HHHHHHHHHHHHHTTCCEEEEESCHH-------HH-HHHHHHSSSEEEESCTTSHHHHHHHTCCTT--CEE
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCeEEEEECCHH-------HH-HHHHHHcCCeEEEcCCCCHHHHHhcCcccC--CEE
Confidence 67999996 99999999999999999999998432 11 1111223788999999999999876 6666 999
Q ss_pred EEccc
Q 012176 198 LHLAA 202 (469)
Q Consensus 198 ih~Aa 202 (469)
|-+.+
T Consensus 70 i~~~~ 74 (218)
T 3l4b_C 70 VILTP 74 (218)
T ss_dssp EECCS
T ss_pred EEecC
Confidence 97664
|
| >2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A | Back alignment and structure |
|---|
Probab=97.80 E-value=7.1e-05 Score=69.46 Aligned_cols=96 Identities=16% Similarity=0.150 Sum_probs=68.8
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHh-hccCCcc
Q 012176 117 NGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKL-FDVVPFT 195 (469)
Q Consensus 117 ~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~-~~~~~~d 195 (469)
..++|+|+|+ |.+|+.+++.|.+.|+ |++++++.+ .. ..+. .++.++.+|.+|++.++++ ++++ |
T Consensus 8 ~~~~viI~G~-G~~G~~la~~L~~~g~-v~vid~~~~-------~~--~~~~-~~~~~i~gd~~~~~~l~~a~i~~a--d 73 (234)
T 2aef_A 8 KSRHVVICGW-SESTLECLRELRGSEV-FVLAEDENV-------RK--KVLR-SGANFVHGDPTRVSDLEKANVRGA--R 73 (234)
T ss_dssp --CEEEEESC-CHHHHHHHHHSTTSEE-EEEESCGGG-------HH--HHHH-TTCEEEESCTTCHHHHHHTTCTTC--S
T ss_pred CCCEEEEECC-ChHHHHHHHHHHhCCe-EEEEECCHH-------HH--HHHh-cCCeEEEcCCCCHHHHHhcCcchh--c
Confidence 3468999997 9999999999999999 999988432 11 1111 4789999999999999877 7777 9
Q ss_pred EEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEE
Q 012176 196 HVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWA 243 (469)
Q Consensus 196 ~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~ 243 (469)
.||-+.+.. +.| ..++..|++.+...++|.-
T Consensus 74 ~vi~~~~~d-------------~~n----~~~~~~a~~~~~~~~iia~ 104 (234)
T 2aef_A 74 AVIVDLESD-------------SET----IHCILGIRKIDESVRIIAE 104 (234)
T ss_dssp EEEECCSCH-------------HHH----HHHHHHHHHHCSSSEEEEE
T ss_pred EEEEcCCCc-------------HHH----HHHHHHHHHHCCCCeEEEE
Confidence 999876430 122 3455667777765355543
|
| >3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A* | Back alignment and structure |
|---|
Probab=97.77 E-value=0.00026 Score=69.09 Aligned_cols=113 Identities=19% Similarity=0.125 Sum_probs=78.3
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCC--cEEEEeCCCCCCChhHHHHHHHhhc-----cCCeEEEEecCCCHHHHHHh
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGD--GVLGLDNFNSYYDPSLKRARQKLLQ-----KHQVFIVEGDLNDAPLLTKL 188 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~-----~~~v~~v~~Dl~d~~~l~~~ 188 (469)
...++|.|+|+ |++|..++..|+..|. +|+++++..+ ..+....++.+ ...+.+..+| .+.
T Consensus 3 ~~~~kI~ViGa-G~vG~~~a~~l~~~~~~~~l~l~D~~~~----k~~g~a~DL~~~~~~~~~~v~i~~~~-------~~a 70 (326)
T 3pqe_A 3 KHVNKVALIGA-GFVGSSYAFALINQGITDELVVIDVNKE----KAMGDVMDLNHGKAFAPQPVKTSYGT-------YED 70 (326)
T ss_dssp CSCCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSCHH----HHHHHHHHHHHTGGGSSSCCEEEEEC-------GGG
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhCCCCceEEEEecchH----HHHHHHHHHHhccccccCCeEEEeCc-------HHH
Confidence 34679999996 9999999999999986 8999998432 11111111111 1245554443 235
Q ss_pred hccCCccEEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEc
Q 012176 189 FDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWAS 244 (469)
Q Consensus 189 ~~~~~~d~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~S 244 (469)
++++ |+||.+||... -......+.+..|+...+.+++.+.+......++.+|
T Consensus 71 ~~~a--DvVvi~ag~p~--kpG~~R~dL~~~N~~Iv~~i~~~I~~~~p~a~vlvvt 122 (326)
T 3pqe_A 71 CKDA--DIVCICAGANQ--KPGETRLELVEKNLKIFKGIVSEVMASGFDGIFLVAT 122 (326)
T ss_dssp GTTC--SEEEECCSCCC--CTTCCHHHHHHHHHHHHHHHHHHHHHTTCCSEEEECS
T ss_pred hCCC--CEEEEecccCC--CCCccHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEcC
Confidence 7777 99999998632 1223456788999999999999999887765677666
|
| >3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A* | Back alignment and structure |
|---|
Probab=97.72 E-value=0.00011 Score=74.17 Aligned_cols=100 Identities=21% Similarity=0.239 Sum_probs=73.5
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHh-hccCCcc
Q 012176 117 NGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKL-FDVVPFT 195 (469)
Q Consensus 117 ~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~-~~~~~~d 195 (469)
.+++|+|+|+ |-+|+.+++.|.+.|++|++++++.+ ....+...++.++.||.++++.++++ ++.+ |
T Consensus 3 ~~~~viIiG~-Gr~G~~va~~L~~~g~~vvvId~d~~---------~v~~~~~~g~~vi~GDat~~~~L~~agi~~A--~ 70 (413)
T 3l9w_A 3 HGMRVIIAGF-GRFGQITGRLLLSSGVKMVVLDHDPD---------HIETLRKFGMKVFYGDATRMDLLESAGAAKA--E 70 (413)
T ss_dssp -CCSEEEECC-SHHHHHHHHHHHHTTCCEEEEECCHH---------HHHHHHHTTCCCEESCTTCHHHHHHTTTTTC--S
T ss_pred CCCeEEEECC-CHHHHHHHHHHHHCCCCEEEEECCHH---------HHHHHHhCCCeEEEcCCCCHHHHHhcCCCcc--C
Confidence 3467999997 99999999999999999999998432 11112234788999999999999887 6666 9
Q ss_pred EEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcC
Q 012176 196 HVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASS 245 (469)
Q Consensus 196 ~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS 245 (469)
+||-+... -.....++..+++.+...++|.-..
T Consensus 71 ~viv~~~~-----------------~~~n~~i~~~ar~~~p~~~Iiara~ 103 (413)
T 3l9w_A 71 VLINAIDD-----------------PQTNLQLTEMVKEHFPHLQIIARAR 103 (413)
T ss_dssp EEEECCSS-----------------HHHHHHHHHHHHHHCTTCEEEEEES
T ss_pred EEEECCCC-----------------hHHHHHHHHHHHHhCCCCeEEEEEC
Confidence 99887642 2234567777888776545655443
|
| >2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.66 E-value=6e-05 Score=74.38 Aligned_cols=77 Identities=23% Similarity=0.173 Sum_probs=53.3
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHH----HHhhcc
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLL----TKLFDV 191 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l----~~~~~~ 191 (469)
..+++|||+||+|.||..+++.+...|++|++++|+.+ ..... .. + +... ..|+.+.+++ .++..+
T Consensus 168 ~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~V~~~~~~~~----~~~~~-~~-~---g~~~-~~d~~~~~~~~~~~~~~~~~ 237 (347)
T 2hcy_A 168 MAGHWVAISGAAGGLGSLAVQYAKAMGYRVLGIDGGEG----KEELF-RS-I---GGEV-FIDFTKEKDIVGAVLKATDG 237 (347)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSTT----HHHHH-HH-T---TCCE-EEETTTCSCHHHHHHHHHTS
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCcEEEEcCCHH----HHHHH-HH-c---CCce-EEecCccHhHHHHHHHHhCC
Confidence 46789999999999999999999999999999998543 11111 11 1 2222 2376643333 333344
Q ss_pred CCccEEEEcccc
Q 012176 192 VPFTHVLHLAAQ 203 (469)
Q Consensus 192 ~~~d~Vih~Aa~ 203 (469)
++|+||+++|.
T Consensus 238 -~~D~vi~~~g~ 248 (347)
T 2hcy_A 238 -GAHGVINVSVS 248 (347)
T ss_dssp -CEEEEEECSSC
T ss_pred -CCCEEEECCCc
Confidence 67999999974
|
| >3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=97.64 E-value=0.00012 Score=71.45 Aligned_cols=113 Identities=16% Similarity=0.107 Sum_probs=68.0
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCC--cEEEEeCCCCCCChhHHHHHHHhhc----cCCeEEEEecCCCHHHHHHhh
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGD--GVLGLDNFNSYYDPSLKRARQKLLQ----KHQVFIVEGDLNDAPLLTKLF 189 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~----~~~v~~v~~Dl~d~~~l~~~~ 189 (469)
..+++|.|+|+ |.+|..++..|+..|. +|+++|+..+ ..+....++.+ ...+.+..+| .+.+
T Consensus 7 ~~~~kV~ViGa-G~vG~~~a~~l~~~~~~~el~l~D~~~~----k~~g~a~DL~~~~~~~~~~~i~~~~-------~~a~ 74 (326)
T 3vku_A 7 KDHQKVILVGD-GAVGSSYAYAMVLQGIAQEIGIVDIFKD----KTKGDAIDLEDALPFTSPKKIYSAE-------YSDA 74 (326)
T ss_dssp CCCCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSCHH----HHHHHHHHHHTTGGGSCCCEEEECC-------GGGG
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEeCChH----HHHHHHhhHhhhhhhcCCcEEEECc-------HHHh
Confidence 46689999996 9999999999999886 8999998322 11111111111 1244444333 2457
Q ss_pred ccCCccEEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEc
Q 012176 190 DVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWAS 244 (469)
Q Consensus 190 ~~~~~d~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~S 244 (469)
+++ |+||.+||... -.-....+.++.|+.-.+.+.+.+.+......++.+|
T Consensus 75 ~~a--DiVvi~ag~~~--kpG~tR~dL~~~N~~I~~~i~~~i~~~~p~a~ilvvt 125 (326)
T 3vku_A 75 KDA--DLVVITAGAPQ--KPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVAA 125 (326)
T ss_dssp TTC--SEEEECCCCC------------------CHHHHHHHHHTTTCCSEEEECS
T ss_pred cCC--CEEEECCCCCC--CCCchHHHHHHHHHHHHHHHHHHHHhcCCceEEEEcc
Confidence 777 99999998632 1223445678889999999999999887765666665
|
| >3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A* | Back alignment and structure |
|---|
Probab=97.48 E-value=0.00074 Score=65.83 Aligned_cols=117 Identities=9% Similarity=0.046 Sum_probs=75.7
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCC-cEEEEeCCCCCCChhHHHHHHH-hhccCCeEEE-EecCCCHHHHHHhhccC
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGD-GVLGLDNFNSYYDPSLKRARQK-LLQKHQVFIV-EGDLNDAPLLTKLFDVV 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~-~~~~~~v~~v-~~Dl~d~~~l~~~~~~~ 192 (469)
++.++|.|+|+ |.+|..++..|+..|+ +|+++++..+............ ........+. ..| . ++++++
T Consensus 5 m~~~kI~viGa-G~vG~~~a~~l~~~~~~~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~t~d------~-~a~~~a 76 (324)
T 3gvi_A 5 MARNKIALIGS-GMIGGTLAHLAGLKELGDVVLFDIAEGTPQGKGLDIAESSPVDGFDAKFTGAND------Y-AAIEGA 76 (324)
T ss_dssp -CCCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEEESS------G-GGGTTC
T ss_pred CcCCEEEEECC-CHHHHHHHHHHHhCCCCeEEEEeCCchhHHHHHHHHhchhhhcCCCCEEEEeCC------H-HHHCCC
Confidence 45689999998 9999999999999998 9999998664321110011110 0111122222 222 2 467788
Q ss_pred CccEEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEc
Q 012176 193 PFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWAS 244 (469)
Q Consensus 193 ~~d~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~S 244 (469)
|+||.++|.... .-....+.+..|+.-.+.+++.+.+.+....+|.+|
T Consensus 77 --DiVIiaag~p~k--~G~~R~dl~~~N~~i~~~i~~~i~~~~p~a~iivvt 124 (324)
T 3gvi_A 77 --DVVIVTAGVPRK--PGMSRDDLLGINLKVMEQVGAGIKKYAPEAFVICIT 124 (324)
T ss_dssp --SEEEECCSCCCC-------CHHHHHHHHHHHHHHHHHHHHCTTCEEEECC
T ss_pred --CEEEEccCcCCC--CCCCHHHHHHhhHHHHHHHHHHHHHHCCCeEEEecC
Confidence 999999986321 112344678889999999999998887665677666
|
| >1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A* | Back alignment and structure |
|---|
Probab=97.47 E-value=0.0006 Score=65.52 Aligned_cols=115 Identities=17% Similarity=0.080 Sum_probs=76.7
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCC--cEEEEeCCCCCCChhHHHHHHHhh-ccCCeEEEEecCCCHHHHHHhhccCCcc
Q 012176 119 MTVLVTGAAGFVGSHCSLALKKRGD--GVLGLDNFNSYYDPSLKRARQKLL-QKHQVFIVEGDLNDAPLLTKLFDVVPFT 195 (469)
Q Consensus 119 ~~VlVtGatG~IG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~-~~~~v~~v~~Dl~d~~~l~~~~~~~~~d 195 (469)
|+|.|+|+ |.+|..++..|+..|+ +|+++++.++.............. -.....+... +| .++++++ |
T Consensus 1 MkI~ViGa-G~vG~~la~~l~~~~~~~~v~L~D~~~~~~~g~~~dl~~~~~~~~~~~~i~~t--~d----~~a~~~a--D 71 (294)
T 1oju_A 1 MKLGFVGA-GRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGG--AD----YSLLKGS--E 71 (294)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEE--SC----GGGGTTC--S
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEECChHHHHHHHHHHHhhhhhcCCCCEEEEe--CC----HHHhCCC--C
Confidence 68999999 9999999999999988 899999854321100000001010 0112333322 12 3577788 9
Q ss_pred EEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEc
Q 012176 196 HVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWAS 244 (469)
Q Consensus 196 ~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~S 244 (469)
+||..+|... -.-....+.+..|+.-.+.+.+.+.+.+....+|.+|
T Consensus 72 iVViaag~~~--kpG~~R~dl~~~N~~i~~~i~~~i~~~~p~a~iivvs 118 (294)
T 1oju_A 72 IIVVTAGLAR--KPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVT 118 (294)
T ss_dssp EEEECCCCCC--CSSCCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECS
T ss_pred EEEECCCCCC--CCCCcHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeC
Confidence 9999998632 1223456788999999999999999887765677666
|
| >3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A* | Back alignment and structure |
|---|
Probab=97.43 E-value=0.00046 Score=66.95 Aligned_cols=84 Identities=14% Similarity=0.136 Sum_probs=59.2
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCC-cEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCc
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGD-GVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPF 194 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~ 194 (469)
..+++++|+|+ |.+|+.++..|.+.|. +|++++|..+..+ .............++.+...++.+.+.+.+.+.++
T Consensus 152 l~gk~~lVlGa-GG~g~aia~~L~~~Ga~~V~i~nR~~~~~~-~a~~la~~~~~~~~~~~~~~~~~~~~~l~~~l~~a-- 227 (315)
T 3tnl_A 152 IIGKKMTICGA-GGAATAICIQAALDGVKEISIFNRKDDFYA-NAEKTVEKINSKTDCKAQLFDIEDHEQLRKEIAES-- 227 (315)
T ss_dssp CTTSEEEEECC-SHHHHHHHHHHHHTTCSEEEEEECSSTTHH-HHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHTC--
T ss_pred ccCCEEEEECC-ChHHHHHHHHHHHCCCCEEEEEECCCchHH-HHHHHHHHhhhhcCCceEEeccchHHHHHhhhcCC--
Confidence 57899999997 8999999999999998 8999999632111 11111112222224455566777877888888877
Q ss_pred cEEEEcccc
Q 012176 195 THVLHLAAQ 203 (469)
Q Consensus 195 d~Vih~Aa~ 203 (469)
|+||++-..
T Consensus 228 DiIINaTp~ 236 (315)
T 3tnl_A 228 VIFTNATGV 236 (315)
T ss_dssp SEEEECSST
T ss_pred CEEEECccC
Confidence 999998653
|
| >1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A* | Back alignment and structure |
|---|
Probab=97.42 E-value=0.00016 Score=70.82 Aligned_cols=78 Identities=21% Similarity=0.211 Sum_probs=52.2
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhcc---C
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDV---V 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~---~ 192 (469)
..+++|+|+||+|.||..+++.+...|++|++++++.+ .+... .. + +.. ...|..+.+++.+.+.. -
T Consensus 144 ~~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~----~~~~~-~~-~---g~~-~~~d~~~~~~~~~~~~~~~~~ 213 (333)
T 1v3u_A 144 KGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDE----KIAYL-KQ-I---GFD-AAFNYKTVNSLEEALKKASPD 213 (333)
T ss_dssp CSSCEEEEESTTBHHHHHHHHHHHHTTCEEEEEESSHH----HHHHH-HH-T---TCS-EEEETTSCSCHHHHHHHHCTT
T ss_pred CCCCEEEEecCCCcHHHHHHHHHHHCCCEEEEEeCCHH----HHHHH-Hh-c---CCc-EEEecCCHHHHHHHHHHHhCC
Confidence 46789999999999999999999999999999998432 11111 11 1 222 22477662333332221 2
Q ss_pred CccEEEEcccc
Q 012176 193 PFTHVLHLAAQ 203 (469)
Q Consensus 193 ~~d~Vih~Aa~ 203 (469)
++|+||+++|.
T Consensus 214 ~~d~vi~~~g~ 224 (333)
T 1v3u_A 214 GYDCYFDNVGG 224 (333)
T ss_dssp CEEEEEESSCH
T ss_pred CCeEEEECCCh
Confidence 57999999984
|
| >3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A* | Back alignment and structure |
|---|
Probab=97.42 E-value=0.0013 Score=63.63 Aligned_cols=115 Identities=22% Similarity=0.097 Sum_probs=77.1
Q ss_pred CEEEEEcCCChhHHHHHHHHHHC-C--CcEEEEeCCCCCCChhHHHHHHHhhccC-CeEEEEecCCCHHHHHHhhccCCc
Q 012176 119 MTVLVTGAAGFVGSHCSLALKKR-G--DGVLGLDNFNSYYDPSLKRARQKLLQKH-QVFIVEGDLNDAPLLTKLFDVVPF 194 (469)
Q Consensus 119 ~~VlVtGatG~IG~~l~~~L~~~-G--~~V~~~~r~~~~~~~~~~~~~~~~~~~~-~v~~v~~Dl~d~~~l~~~~~~~~~ 194 (469)
|+|.|+||+|.+|..++..|..+ + .+++++++.+ . ......++.... .+.+... .+ ....+.++++
T Consensus 1 mKV~IiGAaG~VG~~~a~~L~~~~~~~~el~L~Di~~-~----~~G~a~Dl~~~~~~~~v~~~-~~--~~~~~~~~~a-- 70 (312)
T 3hhp_A 1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAP-V----TPGVAVDLSHIPTAVKIKGF-SG--EDATPALEGA-- 70 (312)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHSCTTEEEEEECSST-T----HHHHHHHHHTSCSSEEEEEE-CS--SCCHHHHTTC--
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCCceEEEEecCC-C----chhHHHHhhCCCCCceEEEe-cC--CCcHHHhCCC--
Confidence 68999999999999999999875 4 5899999854 1 122222222221 2222211 11 1123467777
Q ss_pred cEEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcC
Q 012176 195 THVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASS 245 (469)
Q Consensus 195 d~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS 245 (469)
|+||-.||... -.-.+..+.++.|+.-.+.+.+.+.+......++.+|-
T Consensus 71 Divii~ag~~r--kpG~~R~dll~~N~~I~~~i~~~i~~~~p~a~vlvvtN 119 (312)
T 3hhp_A 71 DVVLISAGVAR--KPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITN 119 (312)
T ss_dssp SEEEECCSCSC--CTTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECSS
T ss_pred CEEEEeCCCCC--CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEecC
Confidence 99999998632 22345678899999999999999988876656776653
|
| >1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A* | Back alignment and structure |
|---|
Probab=97.42 E-value=0.00014 Score=69.31 Aligned_cols=35 Identities=20% Similarity=0.197 Sum_probs=28.3
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHC-CCcEEEE-eCC
Q 012176 117 NGMTVLVTGAAGFVGSHCSLALKKR-GDGVLGL-DNF 151 (469)
Q Consensus 117 ~~~~VlVtGatG~IG~~l~~~L~~~-G~~V~~~-~r~ 151 (469)
++|+|.|+|++|.+|+.+++.+.+. |++|+++ ++.
T Consensus 4 ~~mkV~V~Ga~G~mG~~~~~~~~~~~~~elva~~d~~ 40 (273)
T 1dih_A 4 ANIRVAIAGAGGRMGRQLIQAALALEGVQLGAALERE 40 (273)
T ss_dssp CBEEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCT
T ss_pred CCcEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecC
Confidence 4579999999999999999998854 7787744 443
|
| >2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.41 E-value=0.00055 Score=68.15 Aligned_cols=76 Identities=16% Similarity=0.092 Sum_probs=57.1
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCcc
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFT 195 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~d 195 (469)
..+++|+|+|+ |.||..+++.|...|++|++++|+.+ ..... .... +.. +..|..+.+.++++++++ |
T Consensus 164 l~~~~V~ViGa-G~iG~~~a~~l~~~Ga~V~~~d~~~~----~~~~~-~~~~---g~~-~~~~~~~~~~l~~~~~~~--D 231 (369)
T 2eez_A 164 VAPASVVILGG-GTVGTNAAKIALGMGAQVTILDVNHK----RLQYL-DDVF---GGR-VITLTATEANIKKSVQHA--D 231 (369)
T ss_dssp BCCCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHH----HHHHH-HHHT---TTS-EEEEECCHHHHHHHHHHC--S
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEECCHH----HHHHH-HHhc---Cce-EEEecCCHHHHHHHHhCC--C
Confidence 45689999999 99999999999999999999998432 11111 1111 111 456778888899999887 9
Q ss_pred EEEEcccc
Q 012176 196 HVLHLAAQ 203 (469)
Q Consensus 196 ~Vih~Aa~ 203 (469)
+||++++.
T Consensus 232 vVi~~~g~ 239 (369)
T 2eez_A 232 LLIGAVLV 239 (369)
T ss_dssp EEEECCC-
T ss_pred EEEECCCC
Confidence 99999985
|
| >3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis} | Back alignment and structure |
|---|
Probab=97.39 E-value=0.0025 Score=62.03 Aligned_cols=114 Identities=17% Similarity=0.085 Sum_probs=77.4
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCC-cEEEEeCCCCCCChhHHHHHHHhhc-----cCCeEEEEecCCCHHHHHHhh
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGD-GVLGLDNFNSYYDPSLKRARQKLLQ-----KHQVFIVEGDLNDAPLLTKLF 189 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~-----~~~v~~v~~Dl~d~~~l~~~~ 189 (469)
++.++|.|+|+ |.+|..++..|+..|. +|+++++..+.. +.....+.+ .....+... .|. +.+
T Consensus 3 m~~~kI~iiGa-G~vG~~~a~~l~~~~~~~v~l~Di~~~~~----~g~a~dL~~~~~~~~~~~~v~~t--~d~----~a~ 71 (321)
T 3p7m_A 3 MARKKITLVGA-GNIGGTLAHLALIKQLGDVVLFDIAQGMP----NGKALDLLQTCPIEGVDFKVRGT--NDY----KDL 71 (321)
T ss_dssp CCCCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECSSSSHH----HHHHHHHHTTHHHHTCCCCEEEE--SCG----GGG
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhCCCceEEEEeCChHHH----HHHHHHHHhhhhhcCCCcEEEEc--CCH----HHH
Confidence 34579999995 9999999999999988 999999865421 111111111 112333211 122 467
Q ss_pred ccCCccEEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEc
Q 012176 190 DVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWAS 244 (469)
Q Consensus 190 ~~~~~d~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~S 244 (469)
+++ |+||..+|... -.-....+.+..|+...+.+++.+.+......+|.+|
T Consensus 72 ~~a--DvVIi~ag~p~--k~G~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vivvt 122 (321)
T 3p7m_A 72 ENS--DVVIVTAGVPR--KPGMSRDDLLGINIKVMQTVGEGIKHNCPNAFVICIT 122 (321)
T ss_dssp TTC--SEEEECCSCCC--CTTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECC
T ss_pred CCC--CEEEEcCCcCC--CCCCCHHHHHHHhHHHHHHHHHHHHHHCCCcEEEEec
Confidence 788 99999998632 1223456778899999999999998887665666665
|
| >2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.39 E-value=0.00036 Score=68.63 Aligned_cols=100 Identities=19% Similarity=0.113 Sum_probs=64.9
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHH---HHHHhhccC
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAP---LLTKLFDVV 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~---~l~~~~~~~ 192 (469)
..+++|||+||+|.||..+++.+...|++|++++++.+ .+... .. + +...+ .|..+.+ .+.++..+.
T Consensus 165 ~~g~~vlV~Gasg~iG~~~~~~a~~~G~~Vi~~~~~~~----~~~~~-~~-~---ga~~~-~d~~~~~~~~~~~~~~~~~ 234 (343)
T 2eih_A 165 RPGDDVLVMAAGSGVSVAAIQIAKLFGARVIATAGSED----KLRRA-KA-L---GADET-VNYTHPDWPKEVRRLTGGK 234 (343)
T ss_dssp CTTCEEEECSTTSTTHHHHHHHHHHTTCEEEEEESSHH----HHHHH-HH-H---TCSEE-EETTSTTHHHHHHHHTTTT
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHH----HHHHH-Hh-c---CCCEE-EcCCcccHHHHHHHHhCCC
Confidence 46789999999999999999999999999999998432 11111 11 1 22222 4665543 334444444
Q ss_pred CccEEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcCc
Q 012176 193 PFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSS 246 (469)
Q Consensus 193 ~~d~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS~ 246 (469)
++|+||+++|. . .....+++++..| ++|.+++.
T Consensus 235 ~~d~vi~~~g~-~-----------------~~~~~~~~l~~~G---~~v~~g~~ 267 (343)
T 2eih_A 235 GADKVVDHTGA-L-----------------YFEGVIKATANGG---RIAIAGAS 267 (343)
T ss_dssp CEEEEEESSCS-S-----------------SHHHHHHHEEEEE---EEEESSCC
T ss_pred CceEEEECCCH-H-----------------HHHHHHHhhccCC---EEEEEecC
Confidence 67999999983 1 1234455555544 78887753
|
| >1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=97.39 E-value=0.0012 Score=64.30 Aligned_cols=112 Identities=14% Similarity=0.112 Sum_probs=72.3
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCC--cEEEEeCCCCCCChhHHHHHHHhhcc----CCeEEEEecCCCHHHHHHhhc
Q 012176 117 NGMTVLVTGAAGFVGSHCSLALKKRGD--GVLGLDNFNSYYDPSLKRARQKLLQK----HQVFIVEGDLNDAPLLTKLFD 190 (469)
Q Consensus 117 ~~~~VlVtGatG~IG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~----~~v~~v~~Dl~d~~~l~~~~~ 190 (469)
++++|.|+|+ |++|..++..|+..|. +|+++|.+.+...... ....+. ..+.+.. .+ .+.++
T Consensus 6 ~~~KI~IiGa-G~vG~~~a~~l~~~~~~~ev~L~Di~~~~~~g~~----~dl~~~~~~~~~~~i~~---~~----~~a~~ 73 (318)
T 1y6j_A 6 SRSKVAIIGA-GFVGASAAFTMALRQTANELVLIDVFKEKAIGEA----MDINHGLPFMGQMSLYA---GD----YSDVK 73 (318)
T ss_dssp -CCCEEEECC-SHHHHHHHHHHHHTTCSSEEEEECCC---CCHHH----HHHTTSCCCTTCEEEC-----C----GGGGT
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChHHHHHHH----HHHHHhHHhcCCeEEEE---CC----HHHhC
Confidence 3578999998 9999999999999987 9999998765433211 111111 1333332 22 34577
Q ss_pred cCCccEEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEc
Q 012176 191 VVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWAS 244 (469)
Q Consensus 191 ~~~~d~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~S 244 (469)
++ |+||.+++... -......+....|+.....+++.+.+......+|.+|
T Consensus 74 ~a--DvVii~~g~p~--k~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~t 123 (318)
T 1y6j_A 74 DC--DVIVVTAGANR--KPGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILVVS 123 (318)
T ss_dssp TC--SEEEECCCC--------CHHHHHHHHHHHHHHHHHHHHHHCCSCEEEECS
T ss_pred CC--CEEEEcCCCCC--CCCcCHHHHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Confidence 88 99999998632 1122345678889999999999998876654555543
|
| >3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A* | Back alignment and structure |
|---|
Probab=97.38 E-value=0.0012 Score=64.21 Aligned_cols=117 Identities=15% Similarity=0.130 Sum_probs=75.6
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCC--CcEEEEeCCCCCCChhHHHHHHHh-hccCCeEEEEecCCCHHHHHHhhccC
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRG--DGVLGLDNFNSYYDPSLKRARQKL-LQKHQVFIVEGDLNDAPLLTKLFDVV 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G--~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~v~~v~~Dl~d~~~l~~~~~~~ 192 (469)
++.++|.|+|| |.+|..++..|+..| .+|.+++++.+............. .....+.+.. | + .++++++
T Consensus 4 m~~~KI~IIGa-G~vG~~la~~l~~~~~~~ei~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~-~--~----~~a~~~a 75 (317)
T 3d0o_A 4 FKGNKVVLIGN-GAVGSSYAFSLVNQSIVDELVIIDLDTEKVRGDVMDLKHATPYSPTTVRVKA-G--E----YSDCHDA 75 (317)
T ss_dssp CCCCEEEEECC-SHHHHHHHHHHHHHCSCSEEEEECSCHHHHHHHHHHHHHHGGGSSSCCEEEE-C--C----GGGGTTC
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChhHhhhhhhhHHhhhhhcCCCeEEEe-C--C----HHHhCCC
Confidence 45679999998 999999999999887 489999874321110000000100 0012344433 2 2 3457788
Q ss_pred CccEEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEc
Q 012176 193 PFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWAS 244 (469)
Q Consensus 193 ~~d~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~S 244 (469)
|+||-.++.... ...........|+.-.+.+.+.+.+......+|.+|
T Consensus 76 --DvVvi~ag~~~~--~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~t 123 (317)
T 3d0o_A 76 --DLVVICAGAAQK--PGETRLDLVSKNLKIFKSIVGEVMASKFDGIFLVAT 123 (317)
T ss_dssp --SEEEECCCCCCC--TTCCHHHHHHHHHHHHHHHHHHHHHTTCCSEEEECS
T ss_pred --CEEEECCCCCCC--CCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Confidence 999999986321 123445678889999999999998887665666554
|
| >3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber} | Back alignment and structure |
|---|
Probab=97.37 E-value=0.0016 Score=63.23 Aligned_cols=115 Identities=16% Similarity=0.122 Sum_probs=74.7
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCC--cEEEEeCCCCCCChhHHHHHHH-hhccCCeEEEEecCCCHHHHHHhhccCCcc
Q 012176 119 MTVLVTGAAGFVGSHCSLALKKRGD--GVLGLDNFNSYYDPSLKRARQK-LLQKHQVFIVEGDLNDAPLLTKLFDVVPFT 195 (469)
Q Consensus 119 ~~VlVtGatG~IG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~-~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~d 195 (469)
|+|.|+|+ |.+|..++..|+..|. +|+++++..+............ ......+.+...| + .+.++++ |
T Consensus 1 Mkv~ViGa-G~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~~v~~~~--~----~~a~~~a--D 71 (314)
T 3nep_X 1 MKVTVIGA-GNVGATVAECVARQDVAKEVVMVDIKDGMPQGKALDMRESSPIHGFDTRVTGTN--D----YGPTEDS--D 71 (314)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCSSEEEEECSSTTHHHHHHHHHHHHHHHHTCCCEEEEES--S----SGGGTTC--S
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCchHHHHHHHHHHhccccccCCCcEEEECC--C----HHHhCCC--C
Confidence 68999997 9999999999999886 8999998664211100000000 0111233433222 2 2467778 9
Q ss_pred EEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEc
Q 012176 196 HVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWAS 244 (469)
Q Consensus 196 ~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~S 244 (469)
+||-+||... -.-.+..+.+..|+.-.+.+.+.+.+.+....++.+|
T Consensus 72 vVii~ag~~~--kpG~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vivvt 118 (314)
T 3nep_X 72 VCIITAGLPR--SPGMSRDDLLAKNTEIVGGVTEQFVEGSPDSTIIVVA 118 (314)
T ss_dssp EEEECCCC---------CHHHHHHHHHHHHHHHHHHHTTCTTCEEEECC
T ss_pred EEEECCCCCC--CCCCCHHHHHHhhHHHHHHHHHHHHHhCCCcEEEecC
Confidence 9999998632 2223456788999999999999999887765677666
|
| >4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ... | Back alignment and structure |
|---|
Probab=97.35 E-value=0.00087 Score=65.48 Aligned_cols=116 Identities=18% Similarity=0.181 Sum_probs=78.2
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCC--cEEEEeCCCCCCChhHHHHHHHhhc---cC-CeEEEEecCCCHHHHHHh
Q 012176 115 RPNGMTVLVTGAAGFVGSHCSLALKKRGD--GVLGLDNFNSYYDPSLKRARQKLLQ---KH-QVFIVEGDLNDAPLLTKL 188 (469)
Q Consensus 115 ~~~~~~VlVtGatG~IG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~---~~-~v~~v~~Dl~d~~~l~~~ 188 (469)
....++|.|+|+ |.+|..++..|+..|. +|+++|+... ..+....++.. .. ...++.. .|. + .
T Consensus 16 ~~~~~kV~ViGa-G~vG~~~a~~l~~~~~~~el~L~Di~~~----~~~g~a~DL~~~~~~~~~~~i~~~--~d~---~-~ 84 (331)
T 4aj2_A 16 QVPQNKITVVGV-GAVGMACAISILMKDLADELALVDVIED----KLKGEMMDLQHGSLFLKTPKIVSS--KDY---S-V 84 (331)
T ss_dssp -CCSSEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSCHH----HHHHHHHHHHHTGGGCSCCEEEEC--SSG---G-G
T ss_pred cCCCCEEEEECC-CHHHHHHHHHHHhCCCCceEEEEeCChH----HHHHHHHhhhhhhhccCCCeEEEc--CCH---H-H
Confidence 456789999997 9999999999999986 8999998421 11211111111 11 1222222 232 2 4
Q ss_pred hccCCccEEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcC
Q 012176 189 FDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASS 245 (469)
Q Consensus 189 ~~~~~~d~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS 245 (469)
++++ |+||.+||... -.-....+.++.|+.-.+.+.+.+.+......++.+|-
T Consensus 85 ~~~a--DiVvi~aG~~~--kpG~tR~dL~~~N~~I~~~i~~~i~~~~p~a~vlvvtN 137 (331)
T 4aj2_A 85 TANS--KLVIITAGARQ--QEGESRLNLVQRNVNIFKFIIPNVVKYSPQCKLLIVSN 137 (331)
T ss_dssp GTTE--EEEEECCSCCC--CTTCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECSS
T ss_pred hCCC--CEEEEccCCCC--CCCccHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 7777 99999998632 22345567899999999999999988876656776663
|
| >1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00041 Score=68.03 Aligned_cols=94 Identities=15% Similarity=0.110 Sum_probs=69.3
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHh-hccCCccE
Q 012176 118 GMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKL-FDVVPFTH 196 (469)
Q Consensus 118 ~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~-~~~~~~d~ 196 (469)
.++|+|+|+ |.+|+.+++.|.++|+ |++++++++ +. + +...++.++.||.+|++.++++ ++++ |.
T Consensus 115 ~~~viI~G~-G~~g~~l~~~L~~~g~-v~vid~~~~-------~~--~-~~~~~~~~i~gd~~~~~~L~~a~i~~a--~~ 180 (336)
T 1lnq_A 115 SRHVVICGW-SESTLECLRELRGSEV-FVLAEDENV-------RK--K-VLRSGANFVHGDPTRVSDLEKANVRGA--RA 180 (336)
T ss_dssp -CEEEEESC-CHHHHHHHTTGGGSCE-EEEESCGGG-------HH--H-HHHTTCEEEESCTTSHHHHHHTCSTTE--EE
T ss_pred cCCEEEECC-cHHHHHHHHHHHhCCc-EEEEeCChh-------hh--h-HHhCCcEEEEeCCCCHHHHHhcChhhc--cE
Confidence 568999996 9999999999999999 999987432 11 1 2235899999999999999887 6766 99
Q ss_pred EEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEE
Q 012176 197 VLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVW 242 (469)
Q Consensus 197 Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~ 242 (469)
||-+.+. -.....++..+++.+...++|-
T Consensus 181 vi~~~~~-----------------d~~n~~~~~~ar~~~~~~~iia 209 (336)
T 1lnq_A 181 VIVDLES-----------------DSETIHCILGIRKIDESVRIIA 209 (336)
T ss_dssp EEECCSS-----------------HHHHHHHHHHHHTTCTTSEEEE
T ss_pred EEEcCCc-----------------cHHHHHHHHHHHHHCCCCeEEE
Confidence 9877642 1123455666787776545553
|
| >2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=97.31 E-value=0.0013 Score=64.17 Aligned_cols=113 Identities=16% Similarity=0.106 Sum_probs=75.6
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCC--cEEEEeCCCCCCChhHHHHHHHhhcc----CCeEEEEecCCCHHHHHHhh
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGD--GVLGLDNFNSYYDPSLKRARQKLLQK----HQVFIVEGDLNDAPLLTKLF 189 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~----~~v~~v~~Dl~d~~~l~~~~ 189 (469)
.++++|.|+|| |.+|..++..|+..+. +|.++|+..+ ..+....++.+. ..+.+.. | + .+.+
T Consensus 7 ~~~~KI~IiGa-G~vG~~la~~l~~~~~~~el~L~Di~~~----~~~g~~~dl~~~~~~~~~~~i~~-~--~----~~a~ 74 (326)
T 2zqz_A 7 KDHQKVILVGD-GAVGSSYAYAMVLQGIAQEIGIVDIFKD----KTKGDAIDLSNALPFTSPKKIYS-A--E----YSDA 74 (326)
T ss_dssp CCCCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSCHH----HHHHHHHHHHTTGGGSCCCEEEE-C--C----GGGG
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHcCCCCCEEEEEeCCch----HhHHHHHHHHHHHHhcCCeEEEE-C--C----HHHh
Confidence 45589999998 9999999999988875 8999998332 111111111111 2444443 2 2 3457
Q ss_pred ccCCccEEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEc
Q 012176 190 DVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWAS 244 (469)
Q Consensus 190 ~~~~~d~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~S 244 (469)
+++ |+||..++.... ......+....|+...+.+.+.+.+......+|.+|
T Consensus 75 ~~a--DvVii~ag~~~k--~g~~R~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~t 125 (326)
T 2zqz_A 75 KDA--DLVVITAGAPQK--PGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVAA 125 (326)
T ss_dssp GGC--SEEEECCCCC-------CHHHHHHHHHHHHHHHHHHHHHHTCCSEEEECS
T ss_pred CCC--CEEEEcCCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 888 999999986321 123345678889999999999998887665677665
|
| >4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=97.28 E-value=0.00062 Score=69.83 Aligned_cols=74 Identities=20% Similarity=0.315 Sum_probs=57.8
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHh-hccCCcc
Q 012176 117 NGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKL-FDVVPFT 195 (469)
Q Consensus 117 ~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~-~~~~~~d 195 (469)
+.|+|+|.|+ |-+|++|++.|.++||+|++++++.+ + .....+..++.++.||.++++.++++ ++.+ |
T Consensus 2 ~~M~iiI~G~-G~vG~~la~~L~~~~~~v~vId~d~~-------~-~~~~~~~~~~~~i~Gd~~~~~~L~~Agi~~a--d 70 (461)
T 4g65_A 2 NAMKIIILGA-GQVGGTLAENLVGENNDITIVDKDGD-------R-LRELQDKYDLRVVNGHASHPDVLHEAGAQDA--D 70 (461)
T ss_dssp CCEEEEEECC-SHHHHHHHHHTCSTTEEEEEEESCHH-------H-HHHHHHHSSCEEEESCTTCHHHHHHHTTTTC--S
T ss_pred CcCEEEEECC-CHHHHHHHHHHHHCCCCEEEEECCHH-------H-HHHHHHhcCcEEEEEcCCCHHHHHhcCCCcC--C
Confidence 5689999997 99999999999999999999997332 1 11222234789999999999999877 4555 9
Q ss_pred EEEEcc
Q 012176 196 HVLHLA 201 (469)
Q Consensus 196 ~Vih~A 201 (469)
.+|-+-
T Consensus 71 ~~ia~t 76 (461)
T 4g65_A 71 MLVAVT 76 (461)
T ss_dssp EEEECC
T ss_pred EEEEEc
Confidence 888543
|
| >3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=97.27 E-value=0.002 Score=62.49 Aligned_cols=116 Identities=21% Similarity=0.143 Sum_probs=76.9
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCC-cEEEEeCCCCCCChhHHHHHHHhh-----ccCCeEEEEecCCCHHHHHHhh
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGD-GVLGLDNFNSYYDPSLKRARQKLL-----QKHQVFIVEGDLNDAPLLTKLF 189 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~-----~~~~v~~v~~Dl~d~~~l~~~~ 189 (469)
++.++|.|+|+ |.+|..++..|+..|+ +|+++++... ....+....+.. ......+...+ |. +.+
T Consensus 6 ~~~~kv~ViGa-G~vG~~ia~~l~~~g~~~v~l~D~~~~--~~~~~g~a~dl~~~~~~~~~~~~i~~t~--d~----~a~ 76 (315)
T 3tl2_A 6 IKRKKVSVIGA-GFTGATTAFLLAQKELADVVLVDIPQL--ENPTKGKALDMLEASPVQGFDANIIGTS--DY----ADT 76 (315)
T ss_dssp CCCCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECCGGG--HHHHHHHHHHHHHHHHHHTCCCCEEEES--CG----GGG
T ss_pred cCCCEEEEECC-CHHHHHHHHHHHhCCCCeEEEEeccch--HHHHHHhhhhHHHhhhhccCCCEEEEcC--CH----HHh
Confidence 45679999997 9999999999999999 9999998420 000111111111 11122222211 22 457
Q ss_pred ccCCccEEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEc
Q 012176 190 DVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWAS 244 (469)
Q Consensus 190 ~~~~~d~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~S 244 (469)
+++ |+||-++|... -.-....+.+..|+.-.+.+.+.+.+.+....++.+|
T Consensus 77 ~~a--DvVIiaag~p~--kpg~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vlvvs 127 (315)
T 3tl2_A 77 ADS--DVVVITAGIAR--KPGMSRDDLVATNSKIMKSITRDIAKHSPNAIIVVLT 127 (315)
T ss_dssp TTC--SEEEECCSCCC--CTTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECC
T ss_pred CCC--CEEEEeCCCCC--CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEECC
Confidence 777 99999998632 1224456788999999999999998887665677666
|
| >1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A* | Back alignment and structure |
|---|
Probab=97.27 E-value=0.00012 Score=66.68 Aligned_cols=34 Identities=24% Similarity=0.310 Sum_probs=31.5
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCC
Q 012176 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFN 152 (469)
Q Consensus 119 ~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~ 152 (469)
|+|+|+||+|++|+.+++.|++.|++|++++|+.
T Consensus 1 m~i~iiGa~G~~G~~ia~~l~~~g~~V~~~~r~~ 34 (212)
T 1jay_A 1 MRVALLGGTGNLGKGLALRLATLGHEIVVGSRRE 34 (212)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSH
T ss_pred CeEEEEcCCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 5799999999999999999999999999999853
|
| >3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A* | Back alignment and structure |
|---|
Probab=97.26 E-value=0.00088 Score=65.52 Aligned_cols=78 Identities=19% Similarity=0.128 Sum_probs=52.9
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHH---HHHHhhccC
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAP---LLTKLFDVV 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~---~l~~~~~~~ 192 (469)
..+.+|||+||+|.||..+++.+...|.+|++++++.+ .+. ....+ +... ..|..+.+ .+.++..+.
T Consensus 147 ~~g~~vlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~----~~~--~~~~~---ga~~-~~~~~~~~~~~~~~~~~~~~ 216 (334)
T 3qwb_A 147 KKGDYVLLFAAAGGVGLILNQLLKMKGAHTIAVASTDE----KLK--IAKEY---GAEY-LINASKEDILRQVLKFTNGK 216 (334)
T ss_dssp CTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSHH----HHH--HHHHT---TCSE-EEETTTSCHHHHHHHHTTTS
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHH----HHH--HHHHc---CCcE-EEeCCCchHHHHHHHHhCCC
Confidence 56789999999999999999999999999999998432 111 11111 2221 12444433 344444455
Q ss_pred CccEEEEcccc
Q 012176 193 PFTHVLHLAAQ 203 (469)
Q Consensus 193 ~~d~Vih~Aa~ 203 (469)
++|+||+++|.
T Consensus 217 g~D~vid~~g~ 227 (334)
T 3qwb_A 217 GVDASFDSVGK 227 (334)
T ss_dssp CEEEEEECCGG
T ss_pred CceEEEECCCh
Confidence 68999999985
|
| >1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B* | Back alignment and structure |
|---|
Probab=97.26 E-value=0.0011 Score=62.26 Aligned_cols=108 Identities=22% Similarity=0.210 Sum_probs=67.7
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCC-cEEEEeCCCCCC--------------C-hhHHHHHHHhhc-cC--CeEEEEe
Q 012176 117 NGMTVLVTGAAGFVGSHCSLALKKRGD-GVLGLDNFNSYY--------------D-PSLKRARQKLLQ-KH--QVFIVEG 177 (469)
Q Consensus 117 ~~~~VlVtGatG~IG~~l~~~L~~~G~-~V~~~~r~~~~~--------------~-~~~~~~~~~~~~-~~--~v~~v~~ 177 (469)
.+++|+|.|+ |.+|.++++.|.+.|. +|+++++..-.. - ............ .+ .++.+..
T Consensus 30 ~~~~VlVvG~-Gg~G~~va~~La~~Gv~~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~v~~~~~ 108 (249)
T 1jw9_B 30 KDSRVLIVGL-GGLGCAASQYLASAGVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRINPHIAITPVNA 108 (249)
T ss_dssp HHCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEECS
T ss_pred hCCeEEEEee-CHHHHHHHHHHHHcCCCeEEEEcCCCcccccCCcccccChhhcCcHHHHHHHHHHHHHCCCcEEEEEec
Confidence 4578999996 9999999999999997 788888764110 0 111111111111 12 3455555
Q ss_pred cCCCHHHHHHhhccCCccEEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcCcc
Q 012176 178 DLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSS 247 (469)
Q Consensus 178 Dl~d~~~l~~~~~~~~~d~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS~~ 247 (469)
+++ .+.+.++++++ |+||.+... ...-..+.++|++.+. .+|+.+..+
T Consensus 109 ~~~-~~~~~~~~~~~--DvVi~~~d~-----------------~~~~~~l~~~~~~~~~--p~i~~~~~g 156 (249)
T 1jw9_B 109 LLD-DAELAALIAEH--DLVLDCTDN-----------------VAVRNQLNAGCFAAKV--PLVSGAAIR 156 (249)
T ss_dssp CCC-HHHHHHHHHTS--SEEEECCSS-----------------HHHHHHHHHHHHHHTC--CEEEEEEEB
T ss_pred cCC-HhHHHHHHhCC--CEEEEeCCC-----------------HHHHHHHHHHHHHcCC--CEEEeeecc
Confidence 565 35667778877 999998642 2223456677888776 477665443
|
| >1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A* | Back alignment and structure |
|---|
Probab=97.24 E-value=0.003 Score=61.76 Aligned_cols=117 Identities=14% Similarity=0.087 Sum_probs=73.3
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCC-cEEEEeCCCCCCChhHHHHHHH--hhc-cCCeEEEEecCCCHHHHHHhhccC
Q 012176 117 NGMTVLVTGAAGFVGSHCSLALKKRGD-GVLGLDNFNSYYDPSLKRARQK--LLQ-KHQVFIVEGDLNDAPLLTKLFDVV 192 (469)
Q Consensus 117 ~~~~VlVtGatG~IG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~--~~~-~~~v~~v~~Dl~d~~~l~~~~~~~ 192 (469)
+.|+|.|+|| |.+|..++..|...|+ +|++.+++.+............ .+. ..++.. . +| +++.++++
T Consensus 8 ~~~kI~VIGa-G~vG~~lA~~la~~g~~~V~L~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~-t---~d---~~ea~~~a 79 (331)
T 1pzg_A 8 RRKKVAMIGS-GMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRA-E---YS---YEAALTGA 79 (331)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEE-E---CS---HHHHHTTC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCCeEEEEECChhHHHHHHHHHHhhhhccCCCCEEEE-e---CC---HHHHhCCC
Confidence 4579999998 9999999999999998 9999998754222211111111 111 112221 1 22 45567888
Q ss_pred CccEEEEcccccChhhhcc----ChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEc
Q 012176 193 PFTHVLHLAAQAGVRYAMQ----NPQSYVASNIAGFVNLLEVCKSVNPQPSIVWAS 244 (469)
Q Consensus 193 ~~d~Vih~Aa~~~~~~~~~----~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~S 244 (469)
|+||-.++.... ..++ ...+....|+.-.+.+.+.+.+......+|.+|
T Consensus 80 --DiVi~a~g~p~~-~g~~~~~~~r~dl~~~n~~i~~~i~~~i~~~~p~a~vi~~t 132 (331)
T 1pzg_A 80 --DCVIVTAGLTKV-PGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTFIIVVT 132 (331)
T ss_dssp --SEEEECCSCSSC-TTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECC
T ss_pred --CEEEEccCCCCC-CCcccCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEEc
Confidence 999999975221 1110 334567788888999999888876543444433
|
| >1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=97.24 E-value=0.00058 Score=66.58 Aligned_cols=77 Identities=18% Similarity=0.110 Sum_probs=52.8
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHh---hccC
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKL---FDVV 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~---~~~~ 192 (469)
..+++|+|+||+|.||..+++.+...|++|++++|+.+ ..... .. + +... ..|..+.+..+.+ ..+.
T Consensus 139 ~~g~~vlV~Ga~ggiG~~~~~~a~~~G~~V~~~~~~~~----~~~~~-~~-~---g~~~-~~~~~~~~~~~~~~~~~~~~ 208 (327)
T 1qor_A 139 KPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQ----KAQSA-LK-A---GAWQ-VINYREEDLVERLKEITGGK 208 (327)
T ss_dssp CTTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHH----HHHHH-HH-H---TCSE-EEETTTSCHHHHHHHHTTTC
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHH----HHHHH-HH-c---CCCE-EEECCCccHHHHHHHHhCCC
Confidence 46789999999999999999999999999999998432 11111 11 1 2221 2366655444433 3333
Q ss_pred CccEEEEccc
Q 012176 193 PFTHVLHLAA 202 (469)
Q Consensus 193 ~~d~Vih~Aa 202 (469)
++|+||+++|
T Consensus 209 ~~D~vi~~~g 218 (327)
T 1qor_A 209 KVRVVYDSVG 218 (327)
T ss_dssp CEEEEEECSC
T ss_pred CceEEEECCc
Confidence 6799999998
|
| >1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP} | Back alignment and structure |
|---|
Probab=97.22 E-value=0.00069 Score=66.24 Aligned_cols=78 Identities=18% Similarity=0.146 Sum_probs=53.3
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHH---HHHhhccC
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPL---LTKLFDVV 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~---l~~~~~~~ 192 (469)
..+++|+|+||+|.||..+++.+...|++|++++|+.+ .+... .. + +... ..|..+.+. +.+...+.
T Consensus 144 ~~g~~vlV~Ga~ggiG~~~~~~a~~~G~~Vi~~~~~~~----~~~~~-~~-~---g~~~-~~d~~~~~~~~~i~~~~~~~ 213 (333)
T 1wly_A 144 KPGDYVLIHAAAGGMGHIMVPWARHLGATVIGTVSTEE----KAETA-RK-L---GCHH-TINYSTQDFAEVVREITGGK 213 (333)
T ss_dssp CTTCEEEETTTTSTTHHHHHHHHHHTTCEEEEEESSHH----HHHHH-HH-H---TCSE-EEETTTSCHHHHHHHHHTTC
T ss_pred CCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCHH----HHHHH-HH-c---CCCE-EEECCCHHHHHHHHHHhCCC
Confidence 46789999999999999999999999999999998432 11111 11 1 2221 236655443 33333344
Q ss_pred CccEEEEcccc
Q 012176 193 PFTHVLHLAAQ 203 (469)
Q Consensus 193 ~~d~Vih~Aa~ 203 (469)
++|+||+++|.
T Consensus 214 ~~d~vi~~~g~ 224 (333)
T 1wly_A 214 GVDVVYDSIGK 224 (333)
T ss_dssp CEEEEEECSCT
T ss_pred CCeEEEECCcH
Confidence 67999999985
|
| >1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=97.22 E-value=0.0012 Score=64.13 Aligned_cols=112 Identities=16% Similarity=0.127 Sum_probs=72.3
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCC--cEEEEeCCCCCCChhHHHHHHHhhcc----CCeEEEEecCCCHHHHHHhhc
Q 012176 117 NGMTVLVTGAAGFVGSHCSLALKKRGD--GVLGLDNFNSYYDPSLKRARQKLLQK----HQVFIVEGDLNDAPLLTKLFD 190 (469)
Q Consensus 117 ~~~~VlVtGatG~IG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~----~~v~~v~~Dl~d~~~l~~~~~ 190 (469)
++++|.|+|| |.+|..++..|+..+. +|.++|+..+ ..+.......+. ..+.+.. | + .+.++
T Consensus 4 ~~~KI~IiGa-G~vG~~~a~~l~~~~~~~el~L~Di~~~----~~~g~~~dl~~~~~~~~~~~v~~-~--~----~~a~~ 71 (318)
T 1ez4_A 4 NHQKVVLVGD-GAVGSSYAFAMAQQGIAEEFVIVDVVKD----RTKGDALDLEDAQAFTAPKKIYS-G--E----YSDCK 71 (318)
T ss_dssp TBCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHH----HHHHHHHHHHGGGGGSCCCEEEE-C--C----GGGGT
T ss_pred CCCEEEEECC-CHHHHHHHHHHHcCCCCCEEEEEeCCch----HHHHHHHHHHHHHHhcCCeEEEE-C--C----HHHhC
Confidence 3479999998 9999999999998875 8999998332 111111111111 2444443 2 2 34578
Q ss_pred cCCccEEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEc
Q 012176 191 VVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWAS 244 (469)
Q Consensus 191 ~~~~d~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~S 244 (469)
++ |+||..++.... ......+....|+...+.+.+.+.+.+....+|.+|
T Consensus 72 ~a--DvVii~ag~~~~--~g~~R~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~t 121 (318)
T 1ez4_A 72 DA--DLVVITAGAPQK--PGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVAA 121 (318)
T ss_dssp TC--SEEEECCCC------------CHHHHHHHHHHHHHHHHHTTCCSEEEECS
T ss_pred CC--CEEEECCCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeC
Confidence 88 999999986321 112234567889999999999999887765677665
|
| >1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A* | Back alignment and structure |
|---|
Probab=97.17 E-value=0.00069 Score=65.70 Aligned_cols=111 Identities=14% Similarity=0.140 Sum_probs=69.7
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCC-cEEEEeCCCCCCChhHHHHHHHhhc-----cCCeEEEEecCCCHHHHHHhhccC
Q 012176 119 MTVLVTGAAGFVGSHCSLALKKRGD-GVLGLDNFNSYYDPSLKRARQKLLQ-----KHQVFIVEGDLNDAPLLTKLFDVV 192 (469)
Q Consensus 119 ~~VlVtGatG~IG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~-----~~~v~~v~~Dl~d~~~l~~~~~~~ 192 (469)
|+|.|+|| |.+|..++..|+..|+ +|+++|++.+.. +.......+ .....+... +| + +.++++
T Consensus 3 ~kI~VIGa-G~vG~~~a~~la~~g~~~v~L~Di~~~~~----~g~~~dl~~~~~~~~~~~~i~~t--~d---~-~a~~~a 71 (309)
T 1ur5_A 3 KKISIIGA-GFVGSTTAHWLAAKELGDIVLLDIVEGVP----QGKALDLYEASPIEGFDVRVTGT--NN---Y-ADTANS 71 (309)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSSSSHH----HHHHHHHHTTHHHHTCCCCEEEE--SC---G-GGGTTC
T ss_pred CEEEEECC-CHHHHHHHHHHHHCCCCeEEEEeCCccHH----HHHHHhHHHhHhhcCCCeEEEEC--CC---H-HHHCCC
Confidence 68999998 9999999999999997 899999865322 211111111 112222221 22 2 357778
Q ss_pred CccEEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcC
Q 012176 193 PFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASS 245 (469)
Q Consensus 193 ~~d~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS 245 (469)
|+||.++|.... ......+....|+...+.+.+.+.+.+.. .+|.+.|
T Consensus 72 --D~Vi~a~g~p~~--~g~~r~dl~~~n~~i~~~i~~~i~~~~p~-a~vi~~t 119 (309)
T 1ur5_A 72 --DVIVVTSGAPRK--PGMSREDLIKVNADITRACISQAAPLSPN-AVIIMVN 119 (309)
T ss_dssp --SEEEECCCC----------CHHHHHHHHHHHHHHHHHGGGCTT-CEEEECC
T ss_pred --CEEEEcCCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHhhCCC-eEEEEcC
Confidence 999999986321 11122356778899999999999888755 4443333
|
| >1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=97.16 E-value=0.0011 Score=65.43 Aligned_cols=78 Identities=19% Similarity=0.198 Sum_probs=53.1
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHH---HHhhccC
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLL---TKLFDVV 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l---~~~~~~~ 192 (469)
..+++|+|+||+|.||..+++.+...|++|++++++.+ .+. ... ..+... ..|..+.+.. .+...+.
T Consensus 169 ~~g~~vlV~GasggiG~~~~~~a~~~Ga~Vi~~~~~~~----~~~--~~~---~~ga~~-~~d~~~~~~~~~~~~~~~~~ 238 (351)
T 1yb5_A 169 KAGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEE----GQK--IVL---QNGAHE-VFNHREVNYIDKIKKYVGEK 238 (351)
T ss_dssp CTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHH----HHH--HHH---HTTCSE-EEETTSTTHHHHHHHHHCTT
T ss_pred CCcCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChh----HHH--HHH---HcCCCE-EEeCCCchHHHHHHHHcCCC
Confidence 46789999999999999999999999999999998432 111 111 112222 2466554433 3334444
Q ss_pred CccEEEEcccc
Q 012176 193 PFTHVLHLAAQ 203 (469)
Q Consensus 193 ~~d~Vih~Aa~ 203 (469)
++|+||+++|.
T Consensus 239 ~~D~vi~~~G~ 249 (351)
T 1yb5_A 239 GIDIIIEMLAN 249 (351)
T ss_dssp CEEEEEESCHH
T ss_pred CcEEEEECCCh
Confidence 67999999974
|
| >2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A* | Back alignment and structure |
|---|
Probab=97.15 E-value=0.0026 Score=61.00 Aligned_cols=112 Identities=19% Similarity=0.135 Sum_probs=76.4
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCC--CcEEEEeCCCCCCChhHHHHHHHhhc-----cCCeEEEEecCCCHHHHHHhhcc
Q 012176 119 MTVLVTGAAGFVGSHCSLALKKRG--DGVLGLDNFNSYYDPSLKRARQKLLQ-----KHQVFIVEGDLNDAPLLTKLFDV 191 (469)
Q Consensus 119 ~~VlVtGatG~IG~~l~~~L~~~G--~~V~~~~r~~~~~~~~~~~~~~~~~~-----~~~v~~v~~Dl~d~~~l~~~~~~ 191 (469)
|||.|+|| |+||+.++..|+.++ .++.++|..+. ..+....++.. .....+...+ |. +.+++
T Consensus 1 MKV~IiGa-G~VG~~~a~~l~~~~~~~el~L~Di~~~----~~~G~a~DL~h~~~~~~~~~~i~~~~--d~----~~~~~ 69 (294)
T 2x0j_A 1 MKLGFVGA-GRVGSTSAFTCLLNLDVDEIALVDIAED----LAVGEAMDLAHAAAGIDKYPKIVGGA--DY----SLLKG 69 (294)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHSCCSEEEEECSSHH----HHHHHHHHHHHHHGGGTCCCEEEEES--CG----GGGTT
T ss_pred CEEEEECc-CHHHHHHHHHHHhCCCCCEEEEEeCCCC----cchhhhhhhhcccccCCCCCeEecCC--CH----HHhCC
Confidence 78999996 999999999998876 48999987432 11111111111 1123333321 22 24677
Q ss_pred CCccEEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcC
Q 012176 192 VPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASS 245 (469)
Q Consensus 192 ~~~d~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS 245 (469)
+ |+||-.||.. +-.-....+.+..|..-.+.+.+.+.+......++.+|-
T Consensus 70 a--DvVvitAG~p--rkpGmtR~dLl~~Na~I~~~i~~~i~~~~p~aivlvvsN 119 (294)
T 2x0j_A 70 S--EIIVVTAGLA--RKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTN 119 (294)
T ss_dssp C--SEEEECCCCC--CCSSSCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECSS
T ss_pred C--CEEEEecCCC--CCCCCchHHHHHHHHHHHHHHHHHHHhcCCceEEEEecC
Confidence 7 9999999963 333356678999999999999999999887756666664
|
| >4h7p_A Malate dehydrogenase; ssgcid, structural G seattle structural genomics center for infectious disease, oxidoreductase; 1.30A {Leishmania major} | Back alignment and structure |
|---|
Probab=97.13 E-value=0.0038 Score=61.20 Aligned_cols=175 Identities=18% Similarity=0.132 Sum_probs=100.5
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCC-------cEEEEeCCCCCCChhHHHHHHHhhc--cCC-eEEEEecCCCHHHH
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGD-------GVLGLDNFNSYYDPSLKRARQKLLQ--KHQ-VFIVEGDLNDAPLL 185 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~-------~V~~~~r~~~~~~~~~~~~~~~~~~--~~~-v~~v~~Dl~d~~~l 185 (469)
++..||.|+||+|.||+.|+-.|..... ++.++|..+. .+..+....++.. .+. ..++.++ | .
T Consensus 22 ~~~vKVaViGAaG~IG~~la~~la~~~l~~~~~~~eL~L~Di~~~--~~~~~Gva~DL~~~~~~~~~~~~~~~--~---~ 94 (345)
T 4h7p_A 22 MSAVKVAVTGAAGQIGYALVPLIARGALLGPTTPVELRLLDIEPA--LKALAGVEAELEDCAFPLLDKVVVTA--D---P 94 (345)
T ss_dssp CCCEEEEEESTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGG--HHHHHHHHHHHHHTTCTTEEEEEEES--C---H
T ss_pred CCCCEEEEECcCcHHHHHHHHHHHhccccCCCCccEEEEECCCCc--cccchhhhhhhhhcCccCCCcEEEcC--C---h
Confidence 4556999999999999999998887532 6888886321 0111111112111 111 2222221 2 3
Q ss_pred HHhhccCCccEEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCC-CCeEEEEcCcc---ccCCCCCCCCCCCC
Q 012176 186 TKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNP-QPSIVWASSSS---VYGLNTQVPFSESH 261 (469)
Q Consensus 186 ~~~~~~~~~d~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~-~~~~V~~SS~~---vyg~~~~~~~~E~~ 261 (469)
.+.++++ |+||-.||.. +-.-....+.++.|..-.+.+.+.+.+... ...++.+|-.. +|-. +....
T Consensus 95 ~~a~~~a--dvVvi~aG~p--rkpGmtR~DLl~~Na~I~~~~~~~i~~~a~~~~~vlvvsNPvd~~~~i~-----~~~~~ 165 (345)
T 4h7p_A 95 RVAFDGV--AIAIMCGAFP--RKAGMERKDLLEMNARIFKEQGEAIAAVAASDCRVVVVGNPANTNALIL-----LKSAQ 165 (345)
T ss_dssp HHHTTTC--SEEEECCCCC--CCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHHHHH-----HHHTT
T ss_pred HHHhCCC--CEEEECCCCC--CCCCCCHHHHHHHhHHHHHHHHHHHHhhccCceEEEEeCCCcchHHHHH-----HHHcc
Confidence 5678888 9999999973 323356678999999999999999877543 22455666321 1100 00000
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHhCCcEEEEeecceecCCCC
Q 012176 262 RTDQPASLYAATKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGR 306 (469)
Q Consensus 262 ~~~~p~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~Gp~~~ 306 (469)
-...+...-+.+.+..-++-..+++..|++..-|.-..|.|..++
T Consensus 166 g~~~~r~i~~~t~LDs~R~~~~la~~~~v~~~~V~~~~V~G~HG~ 210 (345)
T 4h7p_A 166 GKLNPRHVTAMTRLDHNRALSLLARKAGVPVSQVRNVIIWGNHSS 210 (345)
T ss_dssp TCSCGGGEEECCHHHHHHHHHHHHHHHTSCGGGEECCEEEBCSST
T ss_pred CCCCcceeeeccchhHHHHHHHHHHHHCcChhheecceeecCCCC
Confidence 000222333334444555555556667877766765667775443
|
| >2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A* | Back alignment and structure |
|---|
Probab=97.13 E-value=0.00041 Score=68.19 Aligned_cols=78 Identities=19% Similarity=0.151 Sum_probs=51.2
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHH----HHHHhhcc
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAP----LLTKLFDV 191 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~----~l~~~~~~ 191 (469)
..+++|||+||+|.||..+++.+...|++|++++++.+ .+..... .-+... ..|..+.+ .+.++. +
T Consensus 154 ~~g~~vlI~Ga~g~iG~~~~~~a~~~G~~V~~~~~~~~----~~~~~~~----~~g~~~-~~d~~~~~~~~~~~~~~~-~ 223 (345)
T 2j3h_A 154 KEGETVYVSAASGAVGQLVGQLAKMMGCYVVGSAGSKE----KVDLLKT----KFGFDD-AFNYKEESDLTAALKRCF-P 223 (345)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHH----HHHHHHH----TSCCSE-EEETTSCSCSHHHHHHHC-T
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHH----HHHHHHH----HcCCce-EEecCCHHHHHHHHHHHh-C
Confidence 46789999999999999999999999999999998321 1111110 113222 23665432 233332 2
Q ss_pred CCccEEEEcccc
Q 012176 192 VPFTHVLHLAAQ 203 (469)
Q Consensus 192 ~~~d~Vih~Aa~ 203 (469)
.++|+||+++|.
T Consensus 224 ~~~d~vi~~~g~ 235 (345)
T 2j3h_A 224 NGIDIYFENVGG 235 (345)
T ss_dssp TCEEEEEESSCH
T ss_pred CCCcEEEECCCH
Confidence 357999999974
|
| >2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A* | Back alignment and structure |
|---|
Probab=97.12 E-value=0.0011 Score=65.54 Aligned_cols=78 Identities=17% Similarity=0.089 Sum_probs=53.3
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHH---HHHhhccC
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPL---LTKLFDVV 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~---l~~~~~~~ 192 (469)
..+++|+|+||+|.||..+++.+...|++|++++|+.+ .+... .. + +.. ...|..+.+. +.+...+.
T Consensus 161 ~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~Vi~~~~~~~----~~~~~-~~-~---g~~-~~~~~~~~~~~~~~~~~~~~~ 230 (354)
T 2j8z_A 161 QAGDYVLIHAGLSGVGTAAIQLTRMAGAIPLVTAGSQK----KLQMA-EK-L---GAA-AGFNYKKEDFSEATLKFTKGA 230 (354)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHH----HHHHH-HH-H---TCS-EEEETTTSCHHHHHHHHTTTS
T ss_pred CCCCEEEEECCccHHHHHHHHHHHHcCCEEEEEeCCHH----HHHHH-HH-c---CCc-EEEecCChHHHHHHHHHhcCC
Confidence 46789999999999999999999999999999998432 11111 11 1 222 1245555443 33333334
Q ss_pred CccEEEEcccc
Q 012176 193 PFTHVLHLAAQ 203 (469)
Q Consensus 193 ~~d~Vih~Aa~ 203 (469)
++|+||+|+|.
T Consensus 231 ~~d~vi~~~G~ 241 (354)
T 2j8z_A 231 GVNLILDCIGG 241 (354)
T ss_dssp CEEEEEESSCG
T ss_pred CceEEEECCCc
Confidence 67999999985
|
| >3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1 | Back alignment and structure |
|---|
Probab=97.08 E-value=0.0031 Score=61.40 Aligned_cols=112 Identities=17% Similarity=0.083 Sum_probs=75.4
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCC--cEEEEeCCCCCCChhHHHHHHHhhc----cCCeEEE-EecCCCHHHHHHhh
Q 012176 117 NGMTVLVTGAAGFVGSHCSLALKKRGD--GVLGLDNFNSYYDPSLKRARQKLLQ----KHQVFIV-EGDLNDAPLLTKLF 189 (469)
Q Consensus 117 ~~~~VlVtGatG~IG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~----~~~v~~v-~~Dl~d~~~l~~~~ 189 (469)
..++|.|+|+ |.+|..++..|+..|. +|+++|+..+ ..+.....+.+ .....+. ..|. +. +
T Consensus 20 ~~~kV~ViGa-G~vG~~~a~~la~~g~~~ev~L~Di~~~----~~~g~a~DL~~~~~~~~~~~i~~t~d~------~~-~ 87 (330)
T 3ldh_A 20 SYNKITVVGC-DAVGMADAISVLMKDLADEVALVDVMED----KLKGEMMDLEHGSLFLHTAKIVSGKDY------SV-S 87 (330)
T ss_dssp CCCEEEEEST-THHHHHHHHHHHHHCCCSEEEEECSCHH----HHHHHHHHHHHHGGGSCCSEEEEESSS------CS-C
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEECCHH----HHHHHHHHhhhhhhcccCCeEEEcCCH------HH-h
Confidence 5689999998 9999999999999986 8999998432 11221111111 1122222 2232 22 6
Q ss_pred ccCCccEEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEc
Q 012176 190 DVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWAS 244 (469)
Q Consensus 190 ~~~~~d~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~S 244 (469)
+++ |+||-+||... -.-.+..+.+..|+.-.+.+.+.+.+.+....++.+|
T Consensus 88 ~da--DiVIitaG~p~--kpG~tR~dll~~N~~I~k~i~~~I~k~~P~a~ilvvt 138 (330)
T 3ldh_A 88 AGS--KLVVITAGARQ--QEGESRLNLVQRNVNIFKFIIPNIVKHSPDCLKELHP 138 (330)
T ss_dssp SSC--SEEEECCSCCC--CSSCCTTGGGHHHHHHHHHHHHHHHHHCTTCEEEECS
T ss_pred CCC--CEEEEeCCCCC--CCCCCHHHHHHhhHHHHHHHHHHHHhhCCCceEEeCC
Confidence 777 99999998732 1223445678889999999999988887665677666
|
| >4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A* | Back alignment and structure |
|---|
Probab=97.06 E-value=0.00089 Score=65.50 Aligned_cols=78 Identities=23% Similarity=0.244 Sum_probs=52.4
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhh-ccCCeEEEEecCCCHHHHHHhhc--cC
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLL-QKHQVFIVEGDLNDAPLLTKLFD--VV 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~v~~v~~Dl~d~~~l~~~~~--~~ 192 (469)
..+++|||+||+|.||..+++.+...|++|++++++.+ +.... ...+... ..|..+.+..+.+.+ +.
T Consensus 148 ~~g~~vlI~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~---------~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~ 217 (336)
T 4b7c_A 148 KNGETVVISGAAGAVGSVAGQIARLKGCRVVGIAGGAE---------KCRFLVEELGFDG-AIDYKNEDLAAGLKRECPK 217 (336)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHH---------HHHHHHHTTCCSE-EEETTTSCHHHHHHHHCTT
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHH---------HHHHHHHHcCCCE-EEECCCHHHHHHHHHhcCC
Confidence 56889999999999999999999999999999997432 11111 1223322 235555443333322 23
Q ss_pred CccEEEEcccc
Q 012176 193 PFTHVLHLAAQ 203 (469)
Q Consensus 193 ~~d~Vih~Aa~ 203 (469)
++|+||+++|.
T Consensus 218 ~~d~vi~~~g~ 228 (336)
T 4b7c_A 218 GIDVFFDNVGG 228 (336)
T ss_dssp CEEEEEESSCH
T ss_pred CceEEEECCCc
Confidence 57999999974
|
| >2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A | Back alignment and structure |
|---|
Probab=97.03 E-value=0.0029 Score=61.23 Aligned_cols=110 Identities=20% Similarity=0.235 Sum_probs=75.0
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCC--CcEEEEeCCCCCCChhHHHHHHHhhc----cCCeEEEEecCCCHHHHHHhhccC
Q 012176 119 MTVLVTGAAGFVGSHCSLALKKRG--DGVLGLDNFNSYYDPSLKRARQKLLQ----KHQVFIVEGDLNDAPLLTKLFDVV 192 (469)
Q Consensus 119 ~~VlVtGatG~IG~~l~~~L~~~G--~~V~~~~r~~~~~~~~~~~~~~~~~~----~~~v~~v~~Dl~d~~~l~~~~~~~ 192 (469)
|+|.|+|| |.+|..++..|+..+ .+|.++|+..+ ..+....+..+ ...+.+.. + + .+.++++
T Consensus 1 ~KI~IiGa-G~vG~~~a~~l~~~~~~~el~L~Di~~~----k~~g~a~dl~~~~~~~~~~~v~~-~--~----~~a~~~a 68 (310)
T 2xxj_A 1 MKVGIVGS-GMVGSATAYALALLGVAREVVLVDLDRK----LAQAHAEDILHATPFAHPVWVWA-G--S----YGDLEGA 68 (310)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSHH----HHHHHHHHHHTTGGGSCCCEEEE-C--C----GGGGTTE
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChh----HHHHHHHHHHHhHhhcCCeEEEE-C--C----HHHhCCC
Confidence 68999998 999999999999887 68999998432 11111122111 12344443 2 2 3357778
Q ss_pred CccEEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEc
Q 012176 193 PFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWAS 244 (469)
Q Consensus 193 ~~d~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~S 244 (469)
|+||..++.... ......+....|+...+.+.+.+.+.+....+|.+|
T Consensus 69 --D~Vii~ag~~~~--~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~t 116 (310)
T 2xxj_A 69 --RAVVLAAGVAQR--PGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLVAT 116 (310)
T ss_dssp --EEEEECCCCCCC--TTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECS
T ss_pred --CEEEECCCCCCC--CCcCHHHHHHhhHHHHHHHHHHHHHHCCCcEEEEec
Confidence 999999986321 123445678889999999999998887765677665
|
| >1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=97.02 E-value=0.0013 Score=62.44 Aligned_cols=35 Identities=23% Similarity=0.202 Sum_probs=32.3
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCC
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNF 151 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~ 151 (469)
..+++|+|+|+ |.+|+.++..|++.|++|++++|.
T Consensus 117 l~~k~vlViGa-Gg~g~a~a~~L~~~G~~V~v~~R~ 151 (271)
T 1nyt_A 117 RPGLRILLIGA-GGASRGVLLPLLSLDCAVTITNRT 151 (271)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSS
T ss_pred cCCCEEEEECC-cHHHHHHHHHHHHcCCEEEEEECC
Confidence 56789999998 889999999999999999999984
|
| >3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=97.01 E-value=0.0019 Score=63.38 Aligned_cols=79 Identities=13% Similarity=0.075 Sum_probs=54.0
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHH---HHHHhhcc
Q 012176 115 RPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAP---LLTKLFDV 191 (469)
Q Consensus 115 ~~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~---~l~~~~~~ 191 (469)
...+.+|||+||+|.||..+++.+...|++|++++++.+. +...+. + +...+ .|..+.+ .+.++..+
T Consensus 142 ~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~----~~~~~~--l---ga~~~-~~~~~~~~~~~~~~~~~~ 211 (340)
T 3gms_A 142 LQRNDVLLVNACGSAIGHLFAQLSQILNFRLIAVTRNNKH----TEELLR--L---GAAYV-IDTSTAPLYETVMELTNG 211 (340)
T ss_dssp CCTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSSTT----HHHHHH--H---TCSEE-EETTTSCHHHHHHHHTTT
T ss_pred cCCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHH----HHHHHh--C---CCcEE-EeCCcccHHHHHHHHhCC
Confidence 3567899999999999999999999999999999986542 222211 1 22211 2444433 34444444
Q ss_pred CCccEEEEcccc
Q 012176 192 VPFTHVLHLAAQ 203 (469)
Q Consensus 192 ~~~d~Vih~Aa~ 203 (469)
.++|+||+++|.
T Consensus 212 ~g~Dvvid~~g~ 223 (340)
T 3gms_A 212 IGADAAIDSIGG 223 (340)
T ss_dssp SCEEEEEESSCH
T ss_pred CCCcEEEECCCC
Confidence 567999999985
|
| >2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=96.99 E-value=0.0018 Score=62.58 Aligned_cols=110 Identities=21% Similarity=0.265 Sum_probs=66.7
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCC--cEEEEeCCCCCCChhHHHHHHHhhcc----CCeEEEEecCCCHHHHHHhhccC
Q 012176 119 MTVLVTGAAGFVGSHCSLALKKRGD--GVLGLDNFNSYYDPSLKRARQKLLQK----HQVFIVEGDLNDAPLLTKLFDVV 192 (469)
Q Consensus 119 ~~VlVtGatG~IG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~----~~v~~v~~Dl~d~~~l~~~~~~~ 192 (469)
|+|.|+|| |.+|..++..|+..|+ +|++++++.+ ............ ..+.+... |. +.++++
T Consensus 1 mkI~VIGa-G~vG~~la~~la~~g~~~eV~L~D~~~~----~~~~~~~~l~~~~~~~~~~~i~~~---~~----~a~~~a 68 (304)
T 2v6b_A 1 MKVGVVGT-GFVGSTAAFALVLRGSCSELVLVDRDED----RAQAEAEDIAHAAPVSHGTRVWHG---GH----SELADA 68 (304)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSHH----HHHHHHHHHTTSCCTTSCCEEEEE---CG----GGGTTC
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCCHH----HHHHHHHhhhhhhhhcCCeEEEEC---CH----HHhCCC
Confidence 58999998 9999999999999999 9999998432 111111111111 12333322 22 357777
Q ss_pred CccEEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEc
Q 012176 193 PFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWAS 244 (469)
Q Consensus 193 ~~d~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~S 244 (469)
|+||-+++.... ......+....|+...+.+++.+.+......+|.+|
T Consensus 69 --DvVIi~~~~~~~--~g~~r~dl~~~n~~i~~~i~~~i~~~~p~~~vi~~t 116 (304)
T 2v6b_A 69 --QVVILTAGANQK--PGESRLDLLEKNADIFRELVPQITRAAPDAVLLVTS 116 (304)
T ss_dssp --SEEEECC--------------CHHHHHHHHHHHHHHHHHHCSSSEEEECS
T ss_pred --CEEEEcCCCCCC--CCCcHHHHHHhHHHHHHHHHHHHHHhCCCeEEEEec
Confidence 999999975221 112233556789989999999888776543555544
|
| >7mdh_A Protein (malate dehydrogenase); chloroplastic malate dehydrogenase (NADP+), activated by LIG chloroplastic malate dehydrogenase; 2.40A {Sorghum bicolor} SCOP: c.2.1.5 d.162.1.1 PDB: 1civ_A* | Back alignment and structure |
|---|
Probab=96.97 E-value=0.0061 Score=60.28 Aligned_cols=121 Identities=15% Similarity=0.058 Sum_probs=76.1
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCC--c---EEEEeCCCCCCChhHHHHHHHhhcc--CCeEEEEecCCCHHHHHHhh
Q 012176 117 NGMTVLVTGAAGFVGSHCSLALKKRGD--G---VLGLDNFNSYYDPSLKRARQKLLQK--HQVFIVEGDLNDAPLLTKLF 189 (469)
Q Consensus 117 ~~~~VlVtGatG~IG~~l~~~L~~~G~--~---V~~~~r~~~~~~~~~~~~~~~~~~~--~~v~~v~~Dl~d~~~l~~~~ 189 (469)
+.++|.|+||+|.||.+++-.|+..+. + |.+.+..........+....++.+. +-..-+.. .+ ...+.+
T Consensus 31 ~~~KV~ViGAaG~VG~~la~~l~~~~l~~e~~~l~L~d~d~~~~~~~~~G~amDL~h~~~p~~~~v~i--~~--~~y~~~ 106 (375)
T 7mdh_A 31 KLVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPLLREVSI--GI--DPYEVF 106 (375)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEE--ES--CHHHHT
T ss_pred CCCEEEEECCCChHHHHHHHHHHcCCcCCCCceeEEEecCccchhhhhHHHHHhHHhhhhhhcCCcEE--ec--CCHHHh
Confidence 457999999999999999999998753 2 6665432221111122222232221 11111111 11 124567
Q ss_pred ccCCccEEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhc-CCCCeEEEEcC
Q 012176 190 DVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSV-NPQPSIVWASS 245 (469)
Q Consensus 190 ~~~~~d~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~-~~~~~~V~~SS 245 (469)
+++ |+||-.||.. +-.-....+.++.|+.-.+.+.+++.+. +....++.+|-
T Consensus 107 ~da--DvVVitag~p--rkpG~tR~DLl~~N~~I~k~i~~~i~~~a~p~~ivlVvsN 159 (375)
T 7mdh_A 107 EDV--DWALLIGAKP--RGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGN 159 (375)
T ss_dssp TTC--SEEEECCCCC--CCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSS
T ss_pred CCC--CEEEEcCCCC--CCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEecC
Confidence 788 9999999862 2223456788999999999999998875 55546777764
|
| >2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A* | Back alignment and structure |
|---|
Probab=96.96 E-value=0.0018 Score=63.96 Aligned_cols=78 Identities=17% Similarity=0.099 Sum_probs=51.9
Q ss_pred CCC--CEEEEEcCCChhHHHHHHHHHHCCC-cEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHH---HHHhh
Q 012176 116 PNG--MTVLVTGAAGFVGSHCSLALKKRGD-GVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPL---LTKLF 189 (469)
Q Consensus 116 ~~~--~~VlVtGatG~IG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~---l~~~~ 189 (469)
..+ ++|||+||+|.||..+++.+...|+ +|++++++.+ .+... .. .-+... ..|..+.+. +.++.
T Consensus 157 ~~g~~~~vlI~GasggiG~~~~~~a~~~Ga~~Vi~~~~~~~----~~~~~-~~---~~g~~~-~~d~~~~~~~~~~~~~~ 227 (357)
T 2zb4_A 157 TAGSNKTMVVSGAAGACGSVAGQIGHFLGCSRVVGICGTHE----KCILL-TS---ELGFDA-AINYKKDNVAEQLRESC 227 (357)
T ss_dssp CTTSCCEEEESSTTBHHHHHHHHHHHHTTCSEEEEEESCHH----HHHHH-HH---TSCCSE-EEETTTSCHHHHHHHHC
T ss_pred CCCCccEEEEECCCcHHHHHHHHHHHHCCCCeEEEEeCCHH----HHHHH-HH---HcCCce-EEecCchHHHHHHHHhc
Confidence 356 8999999999999999999999999 9999998421 11111 11 112222 246655433 33333
Q ss_pred ccCCccEEEEcccc
Q 012176 190 DVVPFTHVLHLAAQ 203 (469)
Q Consensus 190 ~~~~~d~Vih~Aa~ 203 (469)
.+ ++|+||+|+|.
T Consensus 228 ~~-~~d~vi~~~G~ 240 (357)
T 2zb4_A 228 PA-GVDVYFDNVGG 240 (357)
T ss_dssp TT-CEEEEEESCCH
T ss_pred CC-CCCEEEECCCH
Confidence 34 67999999983
|
| >3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A* | Back alignment and structure |
|---|
Probab=96.95 E-value=0.0017 Score=63.29 Aligned_cols=78 Identities=24% Similarity=0.170 Sum_probs=52.9
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHH---HHHHhhccC
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAP---LLTKLFDVV 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~---~l~~~~~~~ 192 (469)
..+++|||+||+|.||..+++.+...|.+|++++++.+ .+... ..+ +... ..|..+.+ .+.+...+.
T Consensus 139 ~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~----~~~~~--~~~---Ga~~-~~~~~~~~~~~~~~~~~~~~ 208 (325)
T 3jyn_A 139 KPGEIILFHAAAGGVGSLACQWAKALGAKLIGTVSSPE----KAAHA--KAL---GAWE-TIDYSHEDVAKRVLELTDGK 208 (325)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSHH----HHHHH--HHH---TCSE-EEETTTSCHHHHHHHHTTTC
T ss_pred CCCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHH----HHHHH--HHc---CCCE-EEeCCCccHHHHHHHHhCCC
Confidence 56789999999999999999999999999999997432 11111 111 2211 12444433 344444445
Q ss_pred CccEEEEcccc
Q 012176 193 PFTHVLHLAAQ 203 (469)
Q Consensus 193 ~~d~Vih~Aa~ 203 (469)
++|+||+++|.
T Consensus 209 g~Dvvid~~g~ 219 (325)
T 3jyn_A 209 KCPVVYDGVGQ 219 (325)
T ss_dssp CEEEEEESSCG
T ss_pred CceEEEECCCh
Confidence 67999999985
|
| >2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A* | Back alignment and structure |
|---|
Probab=96.93 E-value=0.0039 Score=61.69 Aligned_cols=100 Identities=19% Similarity=0.107 Sum_probs=62.9
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHH---HHHHhhccC
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAP---LLTKLFDVV 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~---~l~~~~~~~ 192 (469)
..+.+|||+||+|.||..+++.+...|++|++++++.+ .+... .. -+...+ .|..+.+ .+.+.. +.
T Consensus 162 ~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~----~~~~~-~~----~Ga~~~-~~~~~~~~~~~~~~~~-~~ 230 (362)
T 2c0c_A 162 SEGKKVLVTAAAGGTGQFAMQLSKKAKCHVIGTCSSDE----KSAFL-KS----LGCDRP-INYKTEPVGTVLKQEY-PE 230 (362)
T ss_dssp CTTCEEEETTTTBTTHHHHHHHHHHTTCEEEEEESSHH----HHHHH-HH----TTCSEE-EETTTSCHHHHHHHHC-TT
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEECCHH----HHHHH-HH----cCCcEE-EecCChhHHHHHHHhc-CC
Confidence 46789999999999999999999999999999998421 11111 11 122222 2443332 222222 23
Q ss_pred CccEEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcCcc
Q 012176 193 PFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSS 247 (469)
Q Consensus 193 ~~d~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS~~ 247 (469)
++|+||+++|.. .....+++++..| ++|.+++..
T Consensus 231 g~D~vid~~g~~------------------~~~~~~~~l~~~G---~iv~~g~~~ 264 (362)
T 2c0c_A 231 GVDVVYESVGGA------------------MFDLAVDALATKG---RLIVIGFIS 264 (362)
T ss_dssp CEEEEEECSCTH------------------HHHHHHHHEEEEE---EEEECCCGG
T ss_pred CCCEEEECCCHH------------------HHHHHHHHHhcCC---EEEEEeCCC
Confidence 579999999740 1234555555544 789888654
|
| >3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A* | Back alignment and structure |
|---|
Probab=96.92 E-value=0.003 Score=61.12 Aligned_cols=84 Identities=12% Similarity=0.164 Sum_probs=55.9
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCC-cEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCc
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGD-GVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPF 194 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~ 194 (469)
..+++++|+|+ |.+|+.++..|.+.|. +|+++.|..+..+ .............+..+...++.+.+.+.+.+.++
T Consensus 146 l~gk~~lVlGA-GGaaraia~~L~~~G~~~v~v~nRt~~~~~-~a~~la~~~~~~~~~~v~~~~~~~l~~~~~~l~~~-- 221 (312)
T 3t4e_A 146 MRGKTMVLLGA-GGAATAIGAQAAIEGIKEIKLFNRKDDFFE-KAVAFAKRVNENTDCVVTVTDLADQHAFTEALASA-- 221 (312)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEECSSTHHH-HHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHHC--
T ss_pred cCCCEEEEECc-CHHHHHHHHHHHHcCCCEEEEEECCCchHH-HHHHHHHHhhhccCcceEEechHhhhhhHhhccCc--
Confidence 57899999997 9999999999999998 8999999632111 11111111112224444555666654556667777
Q ss_pred cEEEEcccc
Q 012176 195 THVLHLAAQ 203 (469)
Q Consensus 195 d~Vih~Aa~ 203 (469)
|+|||+-..
T Consensus 222 DiIINaTp~ 230 (312)
T 3t4e_A 222 DILTNGTKV 230 (312)
T ss_dssp SEEEECSST
T ss_pred eEEEECCcC
Confidence 999998654
|
| >1p9o_A Phosphopantothenoylcysteine synthetase; ligase; 2.30A {Homo sapiens} SCOP: c.72.3.1 | Back alignment and structure |
|---|
Probab=96.90 E-value=0.0021 Score=61.94 Aligned_cols=38 Identities=39% Similarity=0.435 Sum_probs=32.4
Q ss_pred CCCCE-EEEE-cCC-----------------ChhHHHHHHHHHHCCCcEEEEeCCCC
Q 012176 116 PNGMT-VLVT-GAA-----------------GFVGSHCSLALKKRGDGVLGLDNFNS 153 (469)
Q Consensus 116 ~~~~~-VlVt-Gat-----------------G~IG~~l~~~L~~~G~~V~~~~r~~~ 153 (469)
..|++ |||| ||| |-.|.+++++++++|++|+.+.+...
T Consensus 34 l~gk~~VLITaGgT~EpID~DpVRfItN~SSGkmG~aiAe~~~~~Ga~V~lv~g~~s 90 (313)
T 1p9o_A 34 AQGRRVVLVTSGGTKVPLEARPVRFLDNFSSGRRGATSAEAFLAAGYGVLFLYRARS 90 (313)
T ss_dssp HTTCCEEEEEESBCEEESSSSCSEEEEECCCCHHHHHHHHHHHHTTCEEEEEEETTS
T ss_pred hcCCeEEEEeCCCcccccCCCceeEecCCCCcHHHHHHHHHHHHCCCEEEEEecCCC
Confidence 35566 9998 677 89999999999999999999998543
|
| >1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A* | Back alignment and structure |
|---|
Probab=96.90 E-value=0.0046 Score=60.01 Aligned_cols=113 Identities=24% Similarity=0.221 Sum_probs=72.2
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCC--cEEEEeCCCCCCChhHHHHHHHhhc-----cCCeEEEEecCCCHHHHHHh
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGD--GVLGLDNFNSYYDPSLKRARQKLLQ-----KHQVFIVEGDLNDAPLLTKL 188 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~-----~~~v~~v~~Dl~d~~~l~~~ 188 (469)
...++|.|+|+ |.+|..++..|+..|. +|+++|++.+ ..+.......+ ...+.+.. | + .+.
T Consensus 4 ~~~~kI~IIGa-G~vG~sla~~l~~~~~~~ev~l~Di~~~----~~~~~~~dl~~~~~~~~~~~~i~~-~--~----~~a 71 (316)
T 1ldn_A 4 NGGARVVVIGA-GFVGASYVFALMNQGIADEIVLIDANES----KAIGDAMDFNHGKVFAPKPVDIWH-G--D----YDD 71 (316)
T ss_dssp TTSCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHH----HHHHHHHHHHHHTTSSSSCCEEEE-C--C----GGG
T ss_pred CCCCEEEEECc-CHHHHHHHHHHHhCCCCCEEEEEeCCcc----hHHHHHhhHHHHhhhcCCCeEEEc-C--c----HHH
Confidence 34579999998 9999999999988774 8999998532 11111111111 11344442 2 2 245
Q ss_pred hccCCccEEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEc
Q 012176 189 FDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWAS 244 (469)
Q Consensus 189 ~~~~~~d~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~S 244 (469)
++++ |+||-+++..... . ....+.+..|..-...+++.+.+......++.+|
T Consensus 72 l~~a--DvViia~~~~~~~-g-~~r~dl~~~n~~i~~~i~~~i~~~~p~a~~iv~t 123 (316)
T 1ldn_A 72 CRDA--DLVVICAGANQKP-G-ETRLDLVDKNIAIFRSIVESVMASGFQGLFLVAT 123 (316)
T ss_dssp TTTC--SEEEECCSCCCCT-T-TCSGGGHHHHHHHHHHHHHHHHHHTCCSEEEECS
T ss_pred hCCC--CEEEEcCCCCCCC-C-CCHHHHHHcChHHHHHHHHHHHHHCCCCEEEEeC
Confidence 7778 9999999863322 1 2234556778888889999888876553455544
|
| >1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A* | Back alignment and structure |
|---|
Probab=96.90 E-value=0.0018 Score=62.79 Aligned_cols=111 Identities=16% Similarity=0.161 Sum_probs=71.7
Q ss_pred CEEEEEcCCChhHHHHHHHHHHC--CCcEEEEeCCCCCCChhHHHHHHHhhc-----cCCeEEEEecCCCHHHHHHhhcc
Q 012176 119 MTVLVTGAAGFVGSHCSLALKKR--GDGVLGLDNFNSYYDPSLKRARQKLLQ-----KHQVFIVEGDLNDAPLLTKLFDV 191 (469)
Q Consensus 119 ~~VlVtGatG~IG~~l~~~L~~~--G~~V~~~~r~~~~~~~~~~~~~~~~~~-----~~~v~~v~~Dl~d~~~l~~~~~~ 191 (469)
|+|.|+|+ |.+|..++..|... |++|++++++.+..+ .......+ .....+... +|. ++ +++
T Consensus 1 mkI~VIGa-G~vG~~la~~la~~~~g~~V~l~D~~~~~~~----~~~~~l~~~~~~~~~~~~i~~t--~d~---~~-l~~ 69 (310)
T 1guz_A 1 MKITVIGA-GNVGATTAFRLAEKQLARELVLLDVVEGIPQ----GKALDMYESGPVGLFDTKVTGS--NDY---AD-TAN 69 (310)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSSSHHH----HHHHHHHTTHHHHTCCCEEEEE--SCG---GG-GTT
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChhHHH----HHHHhHHhhhhcccCCcEEEEC--CCH---HH-HCC
Confidence 58999998 99999999999985 799999999654221 11111111 012222211 232 23 667
Q ss_pred CCccEEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEc
Q 012176 192 VPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWAS 244 (469)
Q Consensus 192 ~~~d~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~S 244 (469)
+ |+||-+++... .......+.+..|+.....+.+.+.+......+|.++
T Consensus 70 a--DvViiav~~p~--~~g~~r~dl~~~n~~i~~~i~~~i~~~~~~~~viv~t 118 (310)
T 1guz_A 70 S--DIVIITAGLPR--KPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIVVS 118 (310)
T ss_dssp C--SEEEECCSCCC--CTTCCHHHHHHHHHHHHHHHHHHHHHHCSSCEEEECC
T ss_pred C--CEEEEeCCCCC--CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEEc
Confidence 7 99999997521 1112345677889999999999888876554666654
|
| >3gxh_A Putative phosphatase (DUF442); YP_001181608.1, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.40A {Shewanella putrefaciens cn-32} PDB: 3gxg_A* | Back alignment and structure |
|---|
Probab=96.89 E-value=0.00089 Score=58.06 Aligned_cols=74 Identities=15% Similarity=0.075 Sum_probs=51.6
Q ss_pred ChhHHHHHHHHHHCCCcEEEEeCCCCCCCh--hHHHHHHHhhccCCeEEEEecCCCH--HHHHHhhccC----CccEEEE
Q 012176 128 GFVGSHCSLALKKRGDGVLGLDNFNSYYDP--SLKRARQKLLQKHQVFIVEGDLNDA--PLLTKLFDVV----PFTHVLH 199 (469)
Q Consensus 128 G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~--~~~~~~~~~~~~~~v~~v~~Dl~d~--~~l~~~~~~~----~~d~Vih 199 (469)
|.++..+++.|.+.|++|++..|....... ........ ....+..+.+|++++ ++++++++.. +-|++||
T Consensus 26 ~~p~~a~a~~La~~Ga~vvi~~r~~~e~~~~~~~~~~~~~--~G~~~~~i~~Dv~~~~~~~v~~~~~~i~~~~G~dVLVn 103 (157)
T 3gxh_A 26 GLPNEQQFSLLKQAGVDVVINLMPDSSKDAHPDEGKLVTQ--AGMDYVYIPVDWQNPKVEDVEAFFAAMDQHKGKDVLVH 103 (157)
T ss_dssp BCCCHHHHHHHHHTTCCEEEECSCTTSTTSCTTHHHHHHH--TTCEEEECCCCTTSCCHHHHHHHHHHHHHTTTSCEEEE
T ss_pred CCCCHHHHHHHHHcCCCEEEECCCcccccccccHHHHHHH--cCCeEEEecCCCCCCCHHHHHHHHHHHHhcCCCCEEEE
Confidence 678999999999999999998886543321 11111111 123566788899998 8887776532 3399999
Q ss_pred cccc
Q 012176 200 LAAQ 203 (469)
Q Consensus 200 ~Aa~ 203 (469)
|||.
T Consensus 104 nAgg 107 (157)
T 3gxh_A 104 CLAN 107 (157)
T ss_dssp CSBS
T ss_pred CCCC
Confidence 9986
|
| >4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=96.83 E-value=0.0028 Score=62.53 Aligned_cols=78 Identities=12% Similarity=0.112 Sum_probs=52.3
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHH---HHHHhhcc
Q 012176 115 RPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAP---LLTKLFDV 191 (469)
Q Consensus 115 ~~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~---~l~~~~~~ 191 (469)
...+.+|||+||+|.||..+++.+...|++|++++++.+ .+... .. + +...+ .|..+.+ .+.++. +
T Consensus 165 ~~~g~~VlV~Gg~g~iG~~~~~~a~~~Ga~Vi~~~~~~~----~~~~~-~~-l---Ga~~~-~~~~~~~~~~~~~~~~-~ 233 (353)
T 4dup_A 165 LTEGESVLIHGGTSGIGTTAIQLARAFGAEVYATAGSTG----KCEAC-ER-L---GAKRG-INYRSEDFAAVIKAET-G 233 (353)
T ss_dssp CCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHH----HHHHH-HH-H---TCSEE-EETTTSCHHHHHHHHH-S
T ss_pred CCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHH----HHHHH-Hh-c---CCCEE-EeCCchHHHHHHHHHh-C
Confidence 356789999999999999999999999999999998432 11111 11 1 22211 3444433 333333 4
Q ss_pred CCccEEEEcccc
Q 012176 192 VPFTHVLHLAAQ 203 (469)
Q Consensus 192 ~~~d~Vih~Aa~ 203 (469)
.++|+||+++|.
T Consensus 234 ~g~Dvvid~~g~ 245 (353)
T 4dup_A 234 QGVDIILDMIGA 245 (353)
T ss_dssp SCEEEEEESCCG
T ss_pred CCceEEEECCCH
Confidence 467999999985
|
| >4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=96.83 E-value=0.0022 Score=62.90 Aligned_cols=79 Identities=20% Similarity=0.197 Sum_probs=52.9
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCC-HHHHHHhhccCCc
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLND-APLLTKLFDVVPF 194 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d-~~~l~~~~~~~~~ 194 (469)
..+.+|||+||+|.||..+++.+...|.+|++++++.+ .+...+ . +. --.++..+ .+ .+.+.++..+.++
T Consensus 158 ~~g~~VlV~Gasg~iG~~~~~~a~~~Ga~Vi~~~~~~~----~~~~~~-~-~g--a~~v~~~~-~~~~~~v~~~~~~~g~ 228 (342)
T 4eye_A 158 RAGETVLVLGAAGGIGTAAIQIAKGMGAKVIAVVNRTA----ATEFVK-S-VG--ADIVLPLE-EGWAKAVREATGGAGV 228 (342)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSGG----GHHHHH-H-HT--CSEEEESS-TTHHHHHHHHTTTSCE
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHH----HHHHHH-h-cC--CcEEecCc-hhHHHHHHHHhCCCCc
Confidence 56789999999999999999999999999999998543 121111 1 11 11233223 22 2334455555567
Q ss_pred cEEEEcccc
Q 012176 195 THVLHLAAQ 203 (469)
Q Consensus 195 d~Vih~Aa~ 203 (469)
|+||+++|.
T Consensus 229 Dvvid~~g~ 237 (342)
T 4eye_A 229 DMVVDPIGG 237 (342)
T ss_dssp EEEEESCC-
T ss_pred eEEEECCch
Confidence 999999985
|
| >1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A | Back alignment and structure |
|---|
Probab=96.82 E-value=0.0027 Score=62.18 Aligned_cols=97 Identities=16% Similarity=0.111 Sum_probs=60.9
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHH---HHHHhhccC
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAP---LLTKLFDVV 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~---~l~~~~~~~ 192 (469)
..+++|||+|| |.||..+++.+...|++|++++++.+ .+... . ..+...+ .|..+.+ .+.++..
T Consensus 163 ~~g~~VlV~Ga-G~vG~~~~~~a~~~Ga~Vi~~~~~~~----~~~~~--~---~lGa~~~-~d~~~~~~~~~~~~~~~-- 229 (339)
T 1rjw_A 163 KPGEWVAIYGI-GGLGHVAVQYAKAMGLNVVAVDIGDE----KLELA--K---ELGADLV-VNPLKEDAAKFMKEKVG-- 229 (339)
T ss_dssp CTTCEEEEECC-STTHHHHHHHHHHTTCEEEEECSCHH----HHHHH--H---HTTCSEE-ECTTTSCHHHHHHHHHS--
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHcCCEEEEEeCCHH----HHHHH--H---HCCCCEE-ecCCCccHHHHHHHHhC--
Confidence 46789999999 77999999999999999999997432 11111 1 1233222 3665433 2333332
Q ss_pred CccEEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcC
Q 012176 193 PFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASS 245 (469)
Q Consensus 193 ~~d~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS 245 (469)
++|+||+++|.. ......+++++..| ++|.++.
T Consensus 230 ~~d~vid~~g~~-----------------~~~~~~~~~l~~~G---~~v~~g~ 262 (339)
T 1rjw_A 230 GVHAAVVTAVSK-----------------PAFQSAYNSIRRGG---ACVLVGL 262 (339)
T ss_dssp SEEEEEESSCCH-----------------HHHHHHHHHEEEEE---EEEECCC
T ss_pred CCCEEEECCCCH-----------------HHHHHHHHHhhcCC---EEEEecc
Confidence 569999999741 12344455555444 7887764
|
| >2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=96.81 E-value=0.0081 Score=58.58 Aligned_cols=115 Identities=14% Similarity=0.136 Sum_probs=70.7
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCC-cEEEEeCCCCCCChhHHHHHHH--hh-ccCCeEEEEecCCCHHHHHHhhccC
Q 012176 117 NGMTVLVTGAAGFVGSHCSLALKKRGD-GVLGLDNFNSYYDPSLKRARQK--LL-QKHQVFIVEGDLNDAPLLTKLFDVV 192 (469)
Q Consensus 117 ~~~~VlVtGatG~IG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~--~~-~~~~v~~v~~Dl~d~~~l~~~~~~~ 192 (469)
..++|.|+|| |.+|..++..|+..|+ +|++.+++.+..+......... .. ...++... .| + +.++++
T Consensus 13 ~~~kI~ViGa-G~vG~~iA~~la~~g~~~V~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t-~d------~-~al~~a 83 (328)
T 2hjr_A 13 MRKKISIIGA-GQIGSTIALLLGQKDLGDVYMFDIIEGVPQGKALDLNHCMALIGSPAKIFGE-NN------Y-EYLQNS 83 (328)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEEE-SC------G-GGGTTC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhHhhccCCCCEEEEC-CC------H-HHHCCC
Confidence 3478999998 9999999999999999 9999999754322111111110 01 11122221 22 2 457777
Q ss_pred CccEEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEc
Q 012176 193 PFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWAS 244 (469)
Q Consensus 193 ~~d~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~S 244 (469)
|+||-.++... ... ....+....|+.-.+.+++.+.+......+|.+|
T Consensus 84 --D~VI~avg~p~-k~g-~tr~dl~~~n~~i~~~i~~~i~~~~p~a~viv~t 131 (328)
T 2hjr_A 84 --DVVIITAGVPR-KPN-MTRSDLLTVNAKIVGSVAENVGKYCPNAFVICIT 131 (328)
T ss_dssp --SEEEECCSCCC-CTT-CCSGGGHHHHHHHHHHHHHHHHHHCTTCEEEECC
T ss_pred --CEEEEcCCCCC-CCC-CchhhHHhhhHHHHHHHHHHHHHHCCCeEEEEec
Confidence 99999987522 111 1222455678888888888877765443455554
|
| >2ph5_A Homospermidine synthase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: NAD; 2.50A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=96.80 E-value=0.0066 Score=61.65 Aligned_cols=95 Identities=9% Similarity=0.085 Sum_probs=64.4
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHCC-C---cEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCH---HHHHHhhc
Q 012176 118 GMTVLVTGAAGFVGSHCSLALKKRG-D---GVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDA---PLLTKLFD 190 (469)
Q Consensus 118 ~~~VlVtGatG~IG~~l~~~L~~~G-~---~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~---~~l~~~~~ 190 (469)
+++|+|.| .|.||+.++..|+++. . +|++.+...... .+. .. .++.+...++++. +.++++++
T Consensus 13 ~~rVlIIG-aGgVG~~va~lla~~~dv~~~~I~vaD~~~~~~--~~~----~~---~g~~~~~~~Vdadnv~~~l~aLl~ 82 (480)
T 2ph5_A 13 KNRFVILG-FGCVGQALMPLIFEKFDIKPSQVTIIAAEGTKV--DVA----QQ---YGVSFKLQQITPQNYLEVIGSTLE 82 (480)
T ss_dssp CSCEEEEC-CSHHHHHHHHHHHHHBCCCGGGEEEEESSCCSC--CHH----HH---HTCEEEECCCCTTTHHHHTGGGCC
T ss_pred CCCEEEEC-cCHHHHHHHHHHHhCCCCceeEEEEeccchhhh--hHH----hh---cCCceeEEeccchhHHHHHHHHhc
Confidence 35799999 5999999999999974 3 788888654432 111 11 1456666666443 44677887
Q ss_pred cCCccEEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEc
Q 012176 191 VVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWAS 244 (469)
Q Consensus 191 ~~~~d~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~S 244 (469)
+. |+|||++-... ...++++|.++|+ ++|-++
T Consensus 83 ~~--DvVIN~s~~~~------------------~l~Im~acleaGv--~YlDTa 114 (480)
T 2ph5_A 83 EN--DFLIDVSIGIS------------------SLALIILCNQKGA--LYINAA 114 (480)
T ss_dssp TT--CEEEECCSSSC------------------HHHHHHHHHHHTC--EEEESS
T ss_pred CC--CEEEECCcccc------------------CHHHHHHHHHcCC--CEEECC
Confidence 64 99998663321 4689999999997 455443
|
| >2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* | Back alignment and structure |
|---|
Probab=96.78 E-value=0.0033 Score=61.81 Aligned_cols=98 Identities=16% Similarity=0.115 Sum_probs=61.7
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCC-cEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHH---HHHHhhccC
Q 012176 117 NGMTVLVTGAAGFVGSHCSLALKKRGD-GVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAP---LLTKLFDVV 192 (469)
Q Consensus 117 ~~~~VlVtGatG~IG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~---~l~~~~~~~ 192 (469)
.+.+|||+|+ |.||..+++.+...|+ +|++++++.+ .+. ....+ +...+ .|..+.+ .+.++..+.
T Consensus 167 ~g~~VlV~Ga-G~vG~~~~q~a~~~Ga~~Vi~~~~~~~----~~~--~~~~~---Ga~~~-~~~~~~~~~~~v~~~~~g~ 235 (348)
T 2d8a_A 167 SGKSVLITGA-GPLGLLGIAVAKASGAYPVIVSEPSDF----RRE--LAKKV---GADYV-INPFEEDVVKEVMDITDGN 235 (348)
T ss_dssp TTCCEEEECC-SHHHHHHHHHHHHTTCCSEEEECSCHH----HHH--HHHHH---TCSEE-ECTTTSCHHHHHHHHTTTS
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHH----HHH--HHHHh---CCCEE-ECCCCcCHHHHHHHHcCCC
Confidence 6789999999 9999999999999999 9999998422 111 11111 22221 3444433 233333444
Q ss_pred CccEEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcC
Q 012176 193 PFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASS 245 (469)
Q Consensus 193 ~~d~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS 245 (469)
++|+||+++|.. ......+++++..| ++|.+++
T Consensus 236 g~D~vid~~g~~-----------------~~~~~~~~~l~~~G---~iv~~g~ 268 (348)
T 2d8a_A 236 GVDVFLEFSGAP-----------------KALEQGLQAVTPAG---RVSLLGL 268 (348)
T ss_dssp CEEEEEECSCCH-----------------HHHHHHHHHEEEEE---EEEECCC
T ss_pred CCCEEEECCCCH-----------------HHHHHHHHHHhcCC---EEEEEcc
Confidence 679999999741 12334455555443 7888775
|
| >4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A | Back alignment and structure |
|---|
Probab=96.77 E-value=0.0078 Score=61.24 Aligned_cols=36 Identities=28% Similarity=0.283 Sum_probs=33.1
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeC
Q 012176 115 RPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDN 150 (469)
Q Consensus 115 ~~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r 150 (469)
...+.+|||+||+|.||...++.+...|.+|+++++
T Consensus 218 ~~~g~~VlV~GasG~iG~~a~qla~~~Ga~vi~~~~ 253 (447)
T 4a0s_A 218 MKQGDIVLIWGASGGLGSYAIQFVKNGGGIPVAVVS 253 (447)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeC
Confidence 356889999999999999999999999999999987
|
| >1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=96.76 E-value=0.0082 Score=58.31 Aligned_cols=110 Identities=15% Similarity=0.138 Sum_probs=70.5
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCC--cEEEEeCCCCCCChhHHHHHHHh---hc-cCCeEEEEecCCCHHHHHHhhccC
Q 012176 119 MTVLVTGAAGFVGSHCSLALKKRGD--GVLGLDNFNSYYDPSLKRARQKL---LQ-KHQVFIVEGDLNDAPLLTKLFDVV 192 (469)
Q Consensus 119 ~~VlVtGatG~IG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~---~~-~~~v~~v~~Dl~d~~~l~~~~~~~ 192 (469)
|+|.|+|+ |.+|..++..|++.|+ +|++++++.+ ......... .. .....+.. +|. +.++++
T Consensus 1 mkI~VIGa-G~~G~~la~~l~~~g~~~~V~l~D~~~~----~~~~~~~~l~~~~~~~~~~~i~~---~d~----~~~~~a 68 (319)
T 1a5z_A 1 MKIGIVGL-GRVGSSTAFALLMKGFAREMVLIDVDKK----RAEGDALDLIHGTPFTRRANIYA---GDY----ADLKGS 68 (319)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHH----HHHHHHHHHHHHGGGSCCCEEEE---CCG----GGGTTC
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEeCChH----HHHHHHHHHHhhhhhcCCcEEEe---CCH----HHhCCC
Confidence 58999998 9999999999999999 9999998532 111111111 10 01222222 232 246677
Q ss_pred CccEEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEc
Q 012176 193 PFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWAS 244 (469)
Q Consensus 193 ~~d~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~S 244 (469)
|+||-+++.... ......+....|+.....+++.+.+......+|.+|
T Consensus 69 --DvViiav~~~~~--~g~~r~dl~~~n~~i~~~i~~~i~~~~~~~~ii~~t 116 (319)
T 1a5z_A 69 --DVVIVAAGVPQK--PGETRLQLLGRNARVMKEIARNVSKYAPDSIVIVVT 116 (319)
T ss_dssp --SEEEECCCCCCC--SSCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECS
T ss_pred --CEEEEccCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeC
Confidence 999999876331 112344667788888899999887765543555554
|
| >3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A | Back alignment and structure |
|---|
Probab=96.75 E-value=0.0031 Score=64.49 Aligned_cols=36 Identities=25% Similarity=0.264 Sum_probs=32.9
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeC
Q 012176 115 RPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDN 150 (469)
Q Consensus 115 ~~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r 150 (469)
...+.+|+|+||+|.||...++.+...|.+|+++++
T Consensus 226 ~~~g~~VlV~GasG~vG~~avqlak~~Ga~vi~~~~ 261 (456)
T 3krt_A 226 MKQGDNVLIWGASGGLGSYATQFALAGGANPICVVS 261 (456)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHcCCeEEEEEC
Confidence 356789999999999999999999999999999987
|
| >1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A* | Back alignment and structure |
|---|
Probab=96.74 E-value=0.0035 Score=61.58 Aligned_cols=78 Identities=18% Similarity=0.214 Sum_probs=52.1
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHC-CCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHH---HHHhhcc
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKR-GDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPL---LTKLFDV 191 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~---l~~~~~~ 191 (469)
..+++|||+||+|.||..+++.+... |++|++++++.+ .+... .. + +... ..|..+.+. +.++...
T Consensus 169 ~~g~~vlV~Gagg~iG~~~~~~a~~~~Ga~Vi~~~~~~~----~~~~~-~~-~---g~~~-~~~~~~~~~~~~~~~~~~~ 238 (347)
T 1jvb_A 169 DPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREE----AVEAA-KR-A---GADY-VINASMQDPLAEIRRITES 238 (347)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHH----HHHHH-HH-H---TCSE-EEETTTSCHHHHHHHHTTT
T ss_pred CCCCEEEEECCCccHHHHHHHHHHHcCCCeEEEEcCCHH----HHHHH-HH-h---CCCE-EecCCCccHHHHHHHHhcC
Confidence 46789999999999999999999999 999999997432 11111 11 1 2211 135555443 4444431
Q ss_pred CCccEEEEcccc
Q 012176 192 VPFTHVLHLAAQ 203 (469)
Q Consensus 192 ~~~d~Vih~Aa~ 203 (469)
-++|+||+++|.
T Consensus 239 ~~~d~vi~~~g~ 250 (347)
T 1jvb_A 239 KGVDAVIDLNNS 250 (347)
T ss_dssp SCEEEEEESCCC
T ss_pred CCceEEEECCCC
Confidence 267999999985
|
| >1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A* | Back alignment and structure |
|---|
Probab=96.70 E-value=0.0026 Score=61.98 Aligned_cols=117 Identities=11% Similarity=0.076 Sum_probs=71.1
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCC-cEEEEeCCCCCCChhHHHHHHHhh--ccCCeEEEEecCCCHHHHHHhhccCC
Q 012176 117 NGMTVLVTGAAGFVGSHCSLALKKRGD-GVLGLDNFNSYYDPSLKRARQKLL--QKHQVFIVEGDLNDAPLLTKLFDVVP 193 (469)
Q Consensus 117 ~~~~VlVtGatG~IG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~--~~~~v~~v~~Dl~d~~~l~~~~~~~~ 193 (469)
..++|.|+|| |.+|..++..|+..|+ +|+++|++.+........ ..... ......+... +| + +.++++
T Consensus 3 ~~~kI~VIGa-G~vG~~ia~~la~~g~~~v~L~Di~~~~l~~~~~~-l~~~~~~~~~~~~i~~t--~d---~-~al~~a- 73 (322)
T 1t2d_A 3 PKAKIVLVGS-GMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALD-TSHTNVMAYSNCKVSGS--NT---Y-DDLAGA- 73 (322)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHH-HHTHHHHHTCCCCEEEE--CC---G-GGGTTC-
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHH-HHhhhhhcCCCcEEEEC--CC---H-HHhCCC-
Confidence 3478999998 9999999999999998 899999865422111111 01110 0112222220 22 3 457788
Q ss_pred ccEEEEcccccChhhhcc----ChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEc
Q 012176 194 FTHVLHLAAQAGVRYAMQ----NPQSYVASNIAGFVNLLEVCKSVNPQPSIVWAS 244 (469)
Q Consensus 194 ~d~Vih~Aa~~~~~~~~~----~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~S 244 (469)
|+||-+++... ...+. ...+....|+.-.+.+.+.+.+......+|.+|
T Consensus 74 -D~Vi~a~g~p~-k~g~~~qe~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~t 126 (322)
T 1t2d_A 74 -DVVIVTAGFTK-APGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIVVT 126 (322)
T ss_dssp -SEEEECCSCSS-CTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECS
T ss_pred -CEEEEeCCCCC-CCCCCcccccHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 99999997521 11110 134557778888888888887776543555554
|
| >3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A* | Back alignment and structure |
|---|
Probab=96.70 E-value=0.0082 Score=57.37 Aligned_cols=110 Identities=17% Similarity=0.161 Sum_probs=68.0
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCC-cEEEEeCCCCCC-------------ChhHHHHHHH-h---hccCCeEEEEe
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGD-GVLGLDNFNSYY-------------DPSLKRARQK-L---LQKHQVFIVEG 177 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~-~V~~~~r~~~~~-------------~~~~~~~~~~-~---~~~~~v~~v~~ 177 (469)
....+|+|.|+ |.+|..+++.|.+.|. +++++|...-.. -..+.....+ . ...-.++.+..
T Consensus 34 L~~~~VlVvGa-GGlGs~va~~La~aGVG~i~lvD~D~Ve~sNL~Rq~~~~~diG~~Ka~aa~~~L~~iNP~v~v~~~~~ 112 (292)
T 3h8v_A 34 IRTFAVAIVGV-GGVGSVTAEMLTRCGIGKLLLFDYDKVELANMNRLFFQPHQAGLSKVQAAEHTLRNINPDVLFEVHNY 112 (292)
T ss_dssp GGGCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECCCBC------------CCTTSBHHHHHHHHHHHHCTTSEEEEECC
T ss_pred HhCCeEEEECc-CHHHHHHHHHHHHcCCCEEEEECCCccChhhcccccCChhhcCchHHHHHHHHHHhhCCCcEEEEecc
Confidence 56679999997 9999999999999985 677777543110 0011111111 1 11225666667
Q ss_pred cCCCHHHHHHhhc---------cCCccEEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcC
Q 012176 178 DLNDAPLLTKLFD---------VVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASS 245 (469)
Q Consensus 178 Dl~d~~~l~~~~~---------~~~~d~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS 245 (469)
++++.+.++.+++ ..++|+||++.- |...-..+-++|.+.+.. +|+.+.
T Consensus 113 ~l~~~~~~~~~~~~~~~~~l~~~~~~DlVid~~D-----------------n~~~R~~in~~c~~~~~P--li~~gv 170 (292)
T 3h8v_A 113 NITTVENFQHFMDRISNGGLEEGKPVDLVLSCVD-----------------NFEARMTINTACNELGQT--WMESGV 170 (292)
T ss_dssp CTTSHHHHHHHHHHHHHBSSSTTBCCSEEEECCS-----------------SHHHHHHHHHHHHHHTCC--EEEEEE
T ss_pred cCCcHHHHHHHhhhhcccccccCCCCCEEEECCc-----------------chhhhhHHHHHHHHhCCC--EEEeee
Confidence 7877676776652 124599998763 222234456778888864 666543
|
| >2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A | Back alignment and structure |
|---|
Probab=96.69 E-value=0.01 Score=57.53 Aligned_cols=118 Identities=13% Similarity=0.121 Sum_probs=69.7
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCC-cEEEEeCCCCCCChhHHHHHHH-hhccCCeEEEEecCCCHHHHHHhhccCCc
Q 012176 117 NGMTVLVTGAAGFVGSHCSLALKKRGD-GVLGLDNFNSYYDPSLKRARQK-LLQKHQVFIVEGDLNDAPLLTKLFDVVPF 194 (469)
Q Consensus 117 ~~~~VlVtGatG~IG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~-~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~ 194 (469)
+.|+|.|+|+ |.+|..++..|+..|+ +|++.+++.+............ ........+... +| + +.++++
T Consensus 3 ~~~kI~VIGa-G~~G~~ia~~la~~g~~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t--~d---~-~a~~~a-- 73 (317)
T 2ewd_A 3 ERRKIAVIGS-GQIGGNIAYIVGKDNLADVVLFDIAEGIPQGKALDITHSMVMFGSTSKVIGT--DD---Y-ADISGS-- 73 (317)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEEE--SC---G-GGGTTC--
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCceEEEEeCCchHHHHHHHHHHhhhhhcCCCcEEEEC--CC---H-HHhCCC--
Confidence 3578999998 9999999999999998 9999999654222110000000 000011112111 22 2 356777
Q ss_pred cEEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcC
Q 012176 195 THVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASS 245 (469)
Q Consensus 195 d~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS 245 (469)
|+||-+++.... ......+....|....+.+++.+.+......+|.+|.
T Consensus 74 DiVi~avg~p~~--~g~~r~d~~~~~~~i~~~i~~~i~~~~~~~iii~~sN 122 (317)
T 2ewd_A 74 DVVIITASIPGR--PKDDRSELLFGNARILDSVAEGVKKYCPNAFVICITN 122 (317)
T ss_dssp SEEEECCCCSSC--CSSCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECCS
T ss_pred CEEEEeCCCCCC--CCCcHHHHHHhhHHHHHHHHHHHHHHCCCcEEEEeCC
Confidence 999999975221 1122233455677777888887776654434555553
|
| >3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus} | Back alignment and structure |
|---|
Probab=96.69 E-value=0.0047 Score=60.60 Aligned_cols=76 Identities=21% Similarity=0.205 Sum_probs=49.9
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCC--HHHHHHhhccCCc
Q 012176 117 NGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLND--APLLTKLFDVVPF 194 (469)
Q Consensus 117 ~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d--~~~l~~~~~~~~~ 194 (469)
.+.+|||+||+|.||...++.+...|.+|++++++.+ .+...+ . + +...+ .|..+ .+.+.++ .+.++
T Consensus 150 ~g~~VlV~gg~G~vG~~a~qla~~~Ga~Vi~~~~~~~----~~~~~~-~-l---Ga~~v-i~~~~~~~~~~~~~-~~~g~ 218 (346)
T 3fbg_A 150 EGKTLLIINGAGGVGSIATQIAKAYGLRVITTASRNE----TIEWTK-K-M---GADIV-LNHKESLLNQFKTQ-GIELV 218 (346)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEECCSHH----HHHHHH-H-H---TCSEE-ECTTSCHHHHHHHH-TCCCE
T ss_pred CCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHH----HHHHHH-h-c---CCcEE-EECCccHHHHHHHh-CCCCc
Confidence 6789999999999999999999999999999987432 111111 1 1 22211 13222 2334443 34467
Q ss_pred cEEEEcccc
Q 012176 195 THVLHLAAQ 203 (469)
Q Consensus 195 d~Vih~Aa~ 203 (469)
|+||+++|.
T Consensus 219 Dvv~d~~g~ 227 (346)
T 3fbg_A 219 DYVFCTFNT 227 (346)
T ss_dssp EEEEESSCH
T ss_pred cEEEECCCc
Confidence 999999874
|
| >1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A* | Back alignment and structure |
|---|
Probab=96.69 E-value=0.0043 Score=61.47 Aligned_cols=75 Identities=13% Similarity=0.044 Sum_probs=53.4
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCccE
Q 012176 117 NGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTH 196 (469)
Q Consensus 117 ~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~d~ 196 (469)
.+.+|||+|+ |.||..+++.+...|.+|++++++.+ .+...... -+... ..|..+.+.+.++.. ++|+
T Consensus 187 ~g~~VlV~Ga-G~vG~~~~q~a~~~Ga~Vi~~~~~~~----~~~~~~~~----lGa~~-v~~~~~~~~~~~~~~--~~D~ 254 (366)
T 1yqd_A 187 PGKHIGIVGL-GGLGHVAVKFAKAFGSKVTVISTSPS----KKEEALKN----FGADS-FLVSRDQEQMQAAAG--TLDG 254 (366)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCGG----GHHHHHHT----SCCSE-EEETTCHHHHHHTTT--CEEE
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCHH----HHHHHHHh----cCCce-EEeccCHHHHHHhhC--CCCE
Confidence 6789999996 99999999999999999999997543 11111111 12222 236667777777665 4599
Q ss_pred EEEcccc
Q 012176 197 VLHLAAQ 203 (469)
Q Consensus 197 Vih~Aa~ 203 (469)
||+++|.
T Consensus 255 vid~~g~ 261 (366)
T 1yqd_A 255 IIDTVSA 261 (366)
T ss_dssp EEECCSS
T ss_pred EEECCCc
Confidence 9999985
|
| >3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=96.68 E-value=0.0051 Score=60.42 Aligned_cols=77 Identities=9% Similarity=-0.024 Sum_probs=51.0
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHH---HHHHhhccCC
Q 012176 117 NGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAP---LLTKLFDVVP 193 (469)
Q Consensus 117 ~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~---~l~~~~~~~~ 193 (469)
.+++|+|+||+|.||...++.+...|.+|++++++.+ .+...+ . + +...+ .|..+.+ .+.++..+.+
T Consensus 164 g~~~vli~gg~g~vG~~a~qla~~~Ga~Vi~~~~~~~----~~~~~~-~-~---Ga~~~-~~~~~~~~~~~v~~~~~~~g 233 (349)
T 3pi7_A 164 GEKAFVMTAGASQLCKLIIGLAKEEGFRPIVTVRRDE----QIALLK-D-I---GAAHV-LNEKAPDFEATLREVMKAEQ 233 (349)
T ss_dssp CCSEEEESSTTSHHHHHHHHHHHHHTCEEEEEESCGG----GHHHHH-H-H---TCSEE-EETTSTTHHHHHHHHHHHHC
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHH----HHHHHH-H-c---CCCEE-EECCcHHHHHHHHHHhcCCC
Confidence 3479999999999999999999999999999998543 122221 1 1 22211 2444433 3344444346
Q ss_pred ccEEEEcccc
Q 012176 194 FTHVLHLAAQ 203 (469)
Q Consensus 194 ~d~Vih~Aa~ 203 (469)
+|+||+++|.
T Consensus 234 ~D~vid~~g~ 243 (349)
T 3pi7_A 234 PRIFLDAVTG 243 (349)
T ss_dssp CCEEEESSCH
T ss_pred CcEEEECCCC
Confidence 7999999985
|
| >1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T* | Back alignment and structure |
|---|
Probab=96.66 E-value=0.013 Score=56.62 Aligned_cols=112 Identities=19% Similarity=0.150 Sum_probs=69.4
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCC--cEEEEeCCCCCCChhHHHHH---HHhhc-cCCeEEEEecCCCHHHHHHhhc
Q 012176 117 NGMTVLVTGAAGFVGSHCSLALKKRGD--GVLGLDNFNSYYDPSLKRAR---QKLLQ-KHQVFIVEGDLNDAPLLTKLFD 190 (469)
Q Consensus 117 ~~~~VlVtGatG~IG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~---~~~~~-~~~v~~v~~Dl~d~~~l~~~~~ 190 (469)
..|+|.|+|+ |.+|..++..|...|+ +|++++|+.+ ...... ..... .....+... +|. +.++
T Consensus 6 ~~mkI~IiGa-G~vG~~~a~~l~~~g~~~~V~l~d~~~~----~~~~~~~~~~~~~~~~~~~~v~~~--~~~----~~~~ 74 (319)
T 1lld_A 6 KPTKLAVIGA-GAVGSTLAFAAAQRGIAREIVLEDIAKE----RVEAEVLDMQHGSSFYPTVSIDGS--DDP----EICR 74 (319)
T ss_dssp -CCEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSHH----HHHHHHHHHHHTGGGSTTCEEEEE--SCG----GGGT
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChh----HHHHHHHHHHhhhhhcCCeEEEeC--CCH----HHhC
Confidence 4579999998 9999999999999999 9999998532 111000 11111 012232222 122 2455
Q ss_pred cCCccEEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEE
Q 012176 191 VVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWA 243 (469)
Q Consensus 191 ~~~~d~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~ 243 (469)
++ |+||-+++.... ......+....|+.....+++.+.+.+....+|.+
T Consensus 75 ~a--D~Vii~v~~~~~--~g~~r~~~~~~n~~~~~~~~~~i~~~~~~~~vi~~ 123 (319)
T 1lld_A 75 DA--DMVVITAGPRQK--PGQSRLELVGATVNILKAIMPNLVKVAPNAIYMLI 123 (319)
T ss_dssp TC--SEEEECCCCCCC--TTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEEC
T ss_pred CC--CEEEECCCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEe
Confidence 66 999999875321 11344567788888888888887766544244443
|
| >1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A | Back alignment and structure |
|---|
Probab=96.62 E-value=0.0018 Score=64.26 Aligned_cols=76 Identities=14% Similarity=0.121 Sum_probs=52.3
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCcc
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFT 195 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~d 195 (469)
..+++|+|+|+ |.+|..+++.|...|.+|++++|..+ ..... ...... .+.. +..+.+.+.+.+.++ |
T Consensus 165 l~~~~VlViGa-GgvG~~aa~~a~~~Ga~V~v~dr~~~----r~~~~-~~~~~~-~~~~---~~~~~~~~~~~~~~~--D 232 (361)
T 1pjc_A 165 VKPGKVVILGG-GVVGTEAAKMAVGLGAQVQIFDINVE----RLSYL-ETLFGS-RVEL---LYSNSAEIETAVAEA--D 232 (361)
T ss_dssp BCCCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHH----HHHHH-HHHHGG-GSEE---EECCHHHHHHHHHTC--S
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEeCCHH----HHHHH-HHhhCc-eeEe---eeCCHHHHHHHHcCC--C
Confidence 34589999998 99999999999999999999998432 11111 111111 2222 223456677777776 9
Q ss_pred EEEEcccc
Q 012176 196 HVLHLAAQ 203 (469)
Q Consensus 196 ~Vih~Aa~ 203 (469)
+||++.+.
T Consensus 233 vVI~~~~~ 240 (361)
T 1pjc_A 233 LLIGAVLV 240 (361)
T ss_dssp EEEECCCC
T ss_pred EEEECCCc
Confidence 99999875
|
| >3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=96.57 E-value=0.0036 Score=61.41 Aligned_cols=77 Identities=19% Similarity=0.198 Sum_probs=51.0
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCC-HHHHHHhhccCCc
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLND-APLLTKLFDVVPF 194 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d-~~~l~~~~~~~~~ 194 (469)
..+.+|||+||+|.||...++.+...|.+|+++ ++.+ .+.. ....+...+. +-.| .+.+.++..+.++
T Consensus 149 ~~g~~VlV~Ga~g~iG~~~~q~a~~~Ga~Vi~~-~~~~----~~~~-----~~~lGa~~i~-~~~~~~~~~~~~~~~~g~ 217 (343)
T 3gaz_A 149 QDGQTVLIQGGGGGVGHVAIQIALARGARVFAT-ARGS----DLEY-----VRDLGATPID-ASREPEDYAAEHTAGQGF 217 (343)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEE-ECHH----HHHH-----HHHHTSEEEE-TTSCHHHHHHHHHTTSCE
T ss_pred CCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEE-eCHH----HHHH-----HHHcCCCEec-cCCCHHHHHHHHhcCCCc
Confidence 567899999999999999999999999999998 4221 1111 1112344332 2222 2334444555578
Q ss_pred cEEEEcccc
Q 012176 195 THVLHLAAQ 203 (469)
Q Consensus 195 d~Vih~Aa~ 203 (469)
|+||+++|.
T Consensus 218 D~vid~~g~ 226 (343)
T 3gaz_A 218 DLVYDTLGG 226 (343)
T ss_dssp EEEEESSCT
T ss_pred eEEEECCCc
Confidence 999999974
|
| >3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium} | Back alignment and structure |
|---|
Probab=96.55 E-value=0.0016 Score=55.36 Aligned_cols=70 Identities=14% Similarity=0.078 Sum_probs=48.0
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCccEE
Q 012176 118 GMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTHV 197 (469)
Q Consensus 118 ~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~d~V 197 (469)
+++|+|+|+ |.+|+.+++.|.+.|++|++.+|..+ ..+...... ++... +. +++.++++++ |+|
T Consensus 21 ~~~v~iiG~-G~iG~~~a~~l~~~g~~v~v~~r~~~-----~~~~~a~~~---~~~~~--~~---~~~~~~~~~~--Div 84 (144)
T 3oj0_A 21 GNKILLVGN-GMLASEIAPYFSYPQYKVTVAGRNID-----HVRAFAEKY---EYEYV--LI---NDIDSLIKNN--DVI 84 (144)
T ss_dssp CCEEEEECC-SHHHHHHGGGCCTTTCEEEEEESCHH-----HHHHHHHHH---TCEEE--EC---SCHHHHHHTC--SEE
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCEEEEEcCCHH-----HHHHHHHHh---CCceE--ee---cCHHHHhcCC--CEE
Confidence 789999996 99999999999999999999998432 111111111 22222 22 2355667777 999
Q ss_pred EEcccc
Q 012176 198 LHLAAQ 203 (469)
Q Consensus 198 ih~Aa~ 203 (469)
|.+.+.
T Consensus 85 i~at~~ 90 (144)
T 3oj0_A 85 ITATSS 90 (144)
T ss_dssp EECSCC
T ss_pred EEeCCC
Confidence 998875
|
| >2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A* | Back alignment and structure |
|---|
Probab=96.55 E-value=0.0057 Score=55.77 Aligned_cols=67 Identities=12% Similarity=0.024 Sum_probs=46.5
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCccE
Q 012176 117 NGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTH 196 (469)
Q Consensus 117 ~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~d~ 196 (469)
.+|+|.|+| +|.+|..+++.|.+.|++|++.+|+.+ ....+...++... ++.++++++ |+
T Consensus 27 ~~~~I~iiG-~G~~G~~la~~l~~~g~~V~~~~r~~~---------~~~~~~~~g~~~~--------~~~~~~~~~--Dv 86 (215)
T 2vns_A 27 EAPKVGILG-SGDFARSLATRLVGSGFKVVVGSRNPK---------RTARLFPSAAQVT--------FQEEAVSSP--EV 86 (215)
T ss_dssp --CCEEEEC-CSHHHHHHHHHHHHTTCCEEEEESSHH---------HHHHHSBTTSEEE--------EHHHHTTSC--SE
T ss_pred CCCEEEEEc-cCHHHHHHHHHHHHCCCEEEEEeCCHH---------HHHHHHHcCCcee--------cHHHHHhCC--CE
Confidence 457899999 799999999999999999999998421 1111222244432 245566766 99
Q ss_pred EEEcccc
Q 012176 197 VLHLAAQ 203 (469)
Q Consensus 197 Vih~Aa~ 203 (469)
||.+...
T Consensus 87 Vi~av~~ 93 (215)
T 2vns_A 87 IFVAVFR 93 (215)
T ss_dssp EEECSCG
T ss_pred EEECCCh
Confidence 9988753
|
| >2nqt_A N-acetyl-gamma-glutamyl-phosphate reductase; apoprotein, dimer, rossmann fold, structural genomics, PSI, protein structure initiative; 1.58A {Mycobacterium tuberculosis} PDB: 2i3a_A* 2i3g_A | Back alignment and structure |
|---|
Probab=96.49 E-value=0.0035 Score=61.69 Aligned_cols=100 Identities=17% Similarity=0.116 Sum_probs=59.1
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCC-----C-cEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhc
Q 012176 117 NGMTVLVTGAAGFVGSHCSLALKKRG-----D-GVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFD 190 (469)
Q Consensus 117 ~~~~VlVtGatG~IG~~l~~~L~~~G-----~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~ 190 (469)
++++|+|.||||++|+.|++.|++++ + +|+.+.+..+.... .............+.+ .|+ |.+. +.
T Consensus 8 ~m~kVaIvGATG~vG~~llr~L~~~~~~~~~~~ei~~l~s~~~agk~-~~~~~~~l~~~~~~~~--~~~-~~~~----~~ 79 (352)
T 2nqt_A 8 NATKVAVAGASGYAGGEILRLLLGHPAYADGRLRIGALTAATSAGST-LGEHHPHLTPLAHRVV--EPT-EAAV----LG 79 (352)
T ss_dssp SCEEEEEETTTSHHHHHHHHHHHTCHHHHTTSEEEEEEEESSCTTSB-GGGTCTTCGGGTTCBC--EEC-CHHH----HT
T ss_pred cCCEEEEECCCCHHHHHHHHHHHcCCCCCCccEEEEEEECCCcCCCc-hhhhcccccccceeee--ccC-CHHH----hc
Confidence 34799999999999999999999987 4 67776532211110 0000000000012222 232 2332 44
Q ss_pred cCCccEEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcCcc
Q 012176 191 VVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSS 247 (469)
Q Consensus 191 ~~~~d~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS~~ 247 (469)
++ |+||.+.+... ...++..+ +.|. ++|-+|+..
T Consensus 80 ~~--DvVf~alg~~~------------------s~~~~~~~-~~G~--~vIDlSa~~ 113 (352)
T 2nqt_A 80 GH--DAVFLALPHGH------------------SAVLAQQL-SPET--LIIDCGADF 113 (352)
T ss_dssp TC--SEEEECCTTSC------------------CHHHHHHS-CTTS--EEEECSSTT
T ss_pred CC--CEEEECCCCcc------------------hHHHHHHH-hCCC--EEEEECCCc
Confidence 56 99999987632 34667777 7774 789888864
|
| >1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A | Back alignment and structure |
|---|
Probab=96.48 E-value=0.016 Score=54.28 Aligned_cols=112 Identities=19% Similarity=0.202 Sum_probs=67.0
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCC-cEEEEeCCCCC----------CC----hhHHHHHHHhhc--cCC--eEEEE
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGD-GVLGLDNFNSY----------YD----PSLKRARQKLLQ--KHQ--VFIVE 176 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~-~V~~~~r~~~~----------~~----~~~~~~~~~~~~--~~~--v~~v~ 176 (469)
..+.+|+|.|+ |.+|.++++.|...|. +++++|+..-. .. ..+.....+.+. .+. ++.+.
T Consensus 26 l~~~~VlvvG~-GglG~~va~~La~~Gvg~i~lvD~d~v~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~v~~~~ 104 (251)
T 1zud_1 26 LLDSQVLIIGL-GGLGTPAALYLAGAGVGTLVLADDDDVHLSNLQRQILFTTEDIDRPKSQVSQQRLTQLNPDIQLTALQ 104 (251)
T ss_dssp HHTCEEEEECC-STTHHHHHHHHHHTTCSEEEEECCCBCCGGGTTTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEEC
T ss_pred HhcCcEEEEcc-CHHHHHHHHHHHHcCCCeEEEEeCCCcccccCCCCccCChhhCCCHHHHHHHHHHHHHCCCCEEEEEe
Confidence 34578999997 7799999999999997 67777654210 00 011111111111 123 44444
Q ss_pred ecCCCHHHHHHhhccCCccEEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcCccccC
Q 012176 177 GDLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYG 250 (469)
Q Consensus 177 ~Dl~d~~~l~~~~~~~~~d~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS~~vyg 250 (469)
.++ +.+.+.++++++ |+||++... ...-..+.++|.+.+. .+|+.+..+.+|
T Consensus 105 ~~~-~~~~~~~~~~~~--DvVi~~~d~-----------------~~~r~~l~~~~~~~~~--p~i~~~~~g~~G 156 (251)
T 1zud_1 105 QRL-TGEALKDAVARA--DVVLDCTDN-----------------MATRQEINAACVALNT--PLITASAVGFGG 156 (251)
T ss_dssp SCC-CHHHHHHHHHHC--SEEEECCSS-----------------HHHHHHHHHHHHHTTC--CEEEEEEEBTEE
T ss_pred ccC-CHHHHHHHHhcC--CEEEECCCC-----------------HHHHHHHHHHHHHhCC--CEEEEeccccce
Confidence 444 346677888877 999988632 2223345567777775 477766544443
|
| >1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D | Back alignment and structure |
|---|
Probab=96.48 E-value=0.0026 Score=61.14 Aligned_cols=74 Identities=22% Similarity=0.174 Sum_probs=50.5
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCC-HHHHHHhhccCCc
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLND-APLLTKLFDVVPF 194 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d-~~~l~~~~~~~~~ 194 (469)
..+.+|+|+||+|.+|..+++.+...|++|++++++.+. +...+ . + +...+ .|..+ .+ +.+.+.+ +
T Consensus 124 ~~g~~vlV~Ga~G~vG~~~~~~a~~~Ga~Vi~~~~~~~~----~~~~~-~-~---ga~~~-~~~~~~~~-~~~~~~~--~ 190 (302)
T 1iz0_A 124 RPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEK----LALPL-A-L---GAEEA-ATYAEVPE-RAKAWGG--L 190 (302)
T ss_dssp CTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGG----SHHHH-H-T---TCSEE-EEGGGHHH-HHHHTTS--E
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHH----HHHHH-h-c---CCCEE-EECCcchh-HHHHhcC--c
Confidence 467899999999999999999999999999999985432 11111 1 1 22222 35554 33 3333344 5
Q ss_pred cEEEEcccc
Q 012176 195 THVLHLAAQ 203 (469)
Q Consensus 195 d~Vih~Aa~ 203 (469)
|+||+ +|.
T Consensus 191 d~vid-~g~ 198 (302)
T 1iz0_A 191 DLVLE-VRG 198 (302)
T ss_dssp EEEEE-CSC
T ss_pred eEEEE-CCH
Confidence 99999 875
|
| >2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=96.48 E-value=0.0091 Score=57.38 Aligned_cols=75 Identities=9% Similarity=-0.020 Sum_probs=51.0
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCC-cEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCc
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGD-GVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPF 194 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~ 194 (469)
..+++|+|+|+ |.+|+.++..|++.|. +|++.+|..+ ..+........ ... ++.+.+++.+.+.++
T Consensus 139 l~~~~vlVlGa-Gg~g~aia~~L~~~G~~~V~v~nR~~~-----ka~~la~~~~~-~~~----~~~~~~~~~~~~~~a-- 205 (297)
T 2egg_A 139 LDGKRILVIGA-GGGARGIYFSLLSTAAERIDMANRTVE-----KAERLVREGDE-RRS----AYFSLAEAETRLAEY-- 205 (297)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHTTTCSEEEEECSSHH-----HHHHHHHHSCS-SSC----CEECHHHHHHTGGGC--
T ss_pred CCCCEEEEECc-HHHHHHHHHHHHHCCCCEEEEEeCCHH-----HHHHHHHHhhh-ccC----ceeeHHHHHhhhccC--
Confidence 56789999997 8899999999999998 9999998432 11111111111 000 122335677777777
Q ss_pred cEEEEcccc
Q 012176 195 THVLHLAAQ 203 (469)
Q Consensus 195 d~Vih~Aa~ 203 (469)
|+||++.+.
T Consensus 206 DivIn~t~~ 214 (297)
T 2egg_A 206 DIIINTTSV 214 (297)
T ss_dssp SEEEECSCT
T ss_pred CEEEECCCC
Confidence 999999875
|
| >1xyg_A Putative N-acetyl-gamma-glutamyl-phosphate reduct; structural genomics, protein structure initiative, CENT eukaryotic structural genomics; 2.19A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.1 PDB: 2q49_A 2cvo_A | Back alignment and structure |
|---|
Probab=96.43 E-value=0.0053 Score=60.69 Aligned_cols=99 Identities=15% Similarity=0.100 Sum_probs=59.6
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCC-cEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCcc
Q 012176 117 NGMTVLVTGAAGFVGSHCSLALKKRGD-GVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFT 195 (469)
Q Consensus 117 ~~~~VlVtGatG~IG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~d 195 (469)
++++|.|.||+|++|+.+++.|.++.+ +|+.+.+..+.. ....... ..+. +.. ..|+.-.+ ++.++++ |
T Consensus 15 ~~~kV~IiGAtG~iG~~llr~L~~~p~~elvai~~~~~~g-~~~~~~~-~~~~--~~v--~~dl~~~~--~~~~~~v--D 84 (359)
T 1xyg_A 15 KDIRIGLLGASGYTGAEIVRLLANHPHFQVTLMTADRKAG-QSMESVF-PHLR--AQK--LPTLVSVK--DADFSTV--D 84 (359)
T ss_dssp CCEEEEEECCSSHHHHHHHHHHHTCSSEEEEEEBCSTTTT-SCHHHHC-GGGT--TSC--CCCCBCGG--GCCGGGC--S
T ss_pred cCcEEEEECcCCHHHHHHHHHHHcCCCcEEEEEeCchhcC-CCHHHhC-chhc--Ccc--cccceecc--hhHhcCC--C
Confidence 457999999999999999999998864 777776533211 1111111 1111 110 13433222 4455666 9
Q ss_pred EEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcCc
Q 012176 196 HVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSS 246 (469)
Q Consensus 196 ~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS~ 246 (469)
+||.+.+... +...+..+ +.|. ++|-.|+.
T Consensus 85 vVf~atp~~~------------------s~~~a~~~-~aG~--~VId~sa~ 114 (359)
T 1xyg_A 85 AVFCCLPHGT------------------TQEIIKEL-PTAL--KIVDLSAD 114 (359)
T ss_dssp EEEECCCTTT------------------HHHHHHTS-CTTC--EEEECSST
T ss_pred EEEEcCCchh------------------HHHHHHHH-hCCC--EEEECCcc
Confidence 9999986522 24555666 6665 68888774
|
| >3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa} | Back alignment and structure |
|---|
Probab=96.39 E-value=0.034 Score=54.76 Aligned_cols=80 Identities=20% Similarity=0.103 Sum_probs=52.3
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCc-EEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHH----HHhhc
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDG-VLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLL----TKLFD 190 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l----~~~~~ 190 (469)
..+.+|||+|+ |.+|...++.+...|.+ |++++++.+ ..+ ....+ ...+.....|-.+.+++ .++..
T Consensus 178 ~~g~~VlV~Ga-G~vG~~aiqlak~~Ga~~Vi~~~~~~~-----~~~-~a~~l-~~~~~~~~~~~~~~~~~~~~v~~~t~ 249 (363)
T 3m6i_A 178 RLGDPVLICGA-GPIGLITMLCAKAAGACPLVITDIDEG-----RLK-FAKEI-CPEVVTHKVERLSAEESAKKIVESFG 249 (363)
T ss_dssp CTTCCEEEECC-SHHHHHHHHHHHHTTCCSEEEEESCHH-----HHH-HHHHH-CTTCEEEECCSCCHHHHHHHHHHHTS
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHH-----HHH-HHHHh-chhcccccccccchHHHHHHHHHHhC
Confidence 46789999998 99999999999999997 888887432 111 22222 22344444443344433 33334
Q ss_pred cCCccEEEEcccc
Q 012176 191 VVPFTHVLHLAAQ 203 (469)
Q Consensus 191 ~~~~d~Vih~Aa~ 203 (469)
+.++|+||++.|.
T Consensus 250 g~g~Dvvid~~g~ 262 (363)
T 3m6i_A 250 GIEPAVALECTGV 262 (363)
T ss_dssp SCCCSEEEECSCC
T ss_pred CCCCCEEEECCCC
Confidence 4567999999975
|
| >2hjs_A USG-1 protein homolog; aspartate-semialdehyde dehydrogenase, probable hydrolase, PS aeruginosa, structurual genomics; 2.20A {Pseudomonas aeruginosa} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=96.39 E-value=0.014 Score=57.12 Aligned_cols=93 Identities=22% Similarity=0.120 Sum_probs=55.9
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHCCC---cEEEEe-CCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCC
Q 012176 118 GMTVLVTGAAGFVGSHCSLALKKRGD---GVLGLD-NFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVP 193 (469)
Q Consensus 118 ~~~VlVtGatG~IG~~l~~~L~~~G~---~V~~~~-r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~ 193 (469)
+|+|+|.||+|++|+.+++.|.+++| +++.+. +.... +. ....+..+...|. |++ .++++
T Consensus 6 ~~kV~IiGAtG~iG~~llr~L~~~~~~~~elv~i~s~~~~g--~~--------~~~~g~~i~~~~~-~~~----~~~~~- 69 (340)
T 2hjs_A 6 PLNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAG--QR--------MGFAESSLRVGDV-DSF----DFSSV- 69 (340)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTTT--CE--------EEETTEEEECEEG-GGC----CGGGC-
T ss_pred CcEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEEecCCCCC--Cc--------cccCCcceEEecC-CHH----HhcCC-
Confidence 46899999999999999999997765 445553 21110 00 0011112111222 121 24566
Q ss_pred ccEEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcCcc
Q 012176 194 FTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSS 247 (469)
Q Consensus 194 ~d~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS~~ 247 (469)
|+||.+.+.. ....++..+.+.|. ++|-+|+..
T Consensus 70 -DvV~~a~g~~------------------~s~~~a~~~~~aG~--kvId~Sa~~ 102 (340)
T 2hjs_A 70 -GLAFFAAAAE------------------VSRAHAERARAAGC--SVIDLSGAL 102 (340)
T ss_dssp -SEEEECSCHH------------------HHHHHHHHHHHTTC--EEEETTCTT
T ss_pred -CEEEEcCCcH------------------HHHHHHHHHHHCCC--EEEEeCCCC
Confidence 9999998641 23566777778886 577777643
|
| >2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.38 E-value=0.01 Score=58.86 Aligned_cols=77 Identities=22% Similarity=0.248 Sum_probs=51.5
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCcc
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFT 195 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~d 195 (469)
..+.+|||+||+|.||...++.+...|.+|+++++ .+ ..... ..+ +...+ .|..+.+..+++.+..++|
T Consensus 182 ~~g~~VlV~Ga~G~vG~~~~qla~~~Ga~Vi~~~~-~~----~~~~~--~~l---Ga~~v-~~~~~~~~~~~~~~~~g~D 250 (375)
T 2vn8_A 182 CTGKRVLILGASGGVGTFAIQVMKAWDAHVTAVCS-QD----ASELV--RKL---GADDV-IDYKSGSVEEQLKSLKPFD 250 (375)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEEC-GG----GHHHH--HHT---TCSEE-EETTSSCHHHHHHTSCCBS
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEeC-hH----HHHHH--HHc---CCCEE-EECCchHHHHHHhhcCCCC
Confidence 46789999999999999999999999999998874 11 12111 111 22221 2555544444444334579
Q ss_pred EEEEcccc
Q 012176 196 HVLHLAAQ 203 (469)
Q Consensus 196 ~Vih~Aa~ 203 (469)
+||+++|.
T Consensus 251 ~vid~~g~ 258 (375)
T 2vn8_A 251 FILDNVGG 258 (375)
T ss_dssp EEEESSCT
T ss_pred EEEECCCC
Confidence 99999985
|
| >3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A | Back alignment and structure |
|---|
Probab=96.36 E-value=0.01 Score=56.55 Aligned_cols=78 Identities=18% Similarity=0.102 Sum_probs=51.6
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCC-cEEEEeCCCCCCChhHHHHHHHhhc-cCCeEEEEecCCCHHHHHHhhccCC
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGD-GVLGLDNFNSYYDPSLKRARQKLLQ-KHQVFIVEGDLNDAPLLTKLFDVVP 193 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~-~~~v~~v~~Dl~d~~~l~~~~~~~~ 193 (469)
..+++|+|+|+ |.+|+.++..|.+.|. +|++++|..+.. ......... ...+.+...+. +++.+.+.++
T Consensus 125 l~~k~vlVlGa-GG~g~aia~~L~~~G~~~v~i~~R~~~~a----~~la~~~~~~~~~~~i~~~~~---~~l~~~l~~~- 195 (283)
T 3jyo_A 125 AKLDSVVQVGA-GGVGNAVAYALVTHGVQKLQVADLDTSRA----QALADVINNAVGREAVVGVDA---RGIEDVIAAA- 195 (283)
T ss_dssp CCCSEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSSHHHH----HHHHHHHHHHHTSCCEEEECS---TTHHHHHHHS-
T ss_pred cCCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEECCHHHH----HHHHHHHHhhcCCceEEEcCH---HHHHHHHhcC-
Confidence 57899999998 9999999999999998 699999953211 111111111 11233333443 3456677777
Q ss_pred ccEEEEcccc
Q 012176 194 FTHVLHLAAQ 203 (469)
Q Consensus 194 ~d~Vih~Aa~ 203 (469)
|+|||+-..
T Consensus 196 -DiVInaTp~ 204 (283)
T 3jyo_A 196 -DGVVNATPM 204 (283)
T ss_dssp -SEEEECSST
T ss_pred -CEEEECCCC
Confidence 999998753
|
| >2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A | Back alignment and structure |
|---|
Probab=96.36 E-value=0.038 Score=53.16 Aligned_cols=111 Identities=21% Similarity=0.203 Sum_probs=73.0
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCC--cEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCc
Q 012176 117 NGMTVLVTGAAGFVGSHCSLALKKRGD--GVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPF 194 (469)
Q Consensus 117 ~~~~VlVtGatG~IG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~ 194 (469)
..++|.|+|| |.+|..++..|+..|. +|+++|+..+......... . ...+++... .| + +.++++
T Consensus 13 ~~~kV~ViGa-G~vG~~~a~~l~~~g~~~ev~L~Di~~~~~g~a~dl~--~-~~~~~i~~t-~d------~-~~l~~a-- 78 (303)
T 2i6t_A 13 TVNKITVVGG-GELGIACTLAISAKGIADRLVLLDLSEGTKGATMDLE--I-FNLPNVEIS-KD------L-SASAHS-- 78 (303)
T ss_dssp -CCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECCC-----CHHHHH--H-HTCTTEEEE-SC------G-GGGTTC--
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEcCCcchHHHHHHHh--h-hcCCCeEEe-CC------H-HHHCCC--
Confidence 3478999996 9999999999999998 9999998764111111111 1 222344442 23 2 357778
Q ss_pred cEEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEc
Q 012176 195 THVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWAS 244 (469)
Q Consensus 195 d~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~S 244 (469)
|+||-.+|.. . ......+....|+.-.+.+++.+.+......+|.+|
T Consensus 79 D~Vi~aag~~--~-pG~tR~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~s 125 (303)
T 2i6t_A 79 KVVIFTVNSL--G-SSQSYLDVVQSNVDMFRALVPALGHYSQHSVLLVAS 125 (303)
T ss_dssp SEEEECCCC-------CCHHHHHHHHHHHHHHHHHHHHHHTTTCEEEECS
T ss_pred CEEEEcCCCC--C-CCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcC
Confidence 9999999873 2 223455678889999999999888876554556655
|
| >1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=96.35 E-value=0.0017 Score=62.26 Aligned_cols=35 Identities=14% Similarity=0.221 Sum_probs=31.5
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCC
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFN 152 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~ 152 (469)
.++++|+|||+ |.+|+.++..|++.| +|++++|..
T Consensus 126 l~~k~vlV~Ga-GgiG~aia~~L~~~G-~V~v~~r~~ 160 (287)
T 1nvt_A 126 VKDKNIVIYGA-GGAARAVAFELAKDN-NIIIANRTV 160 (287)
T ss_dssp CCSCEEEEECC-SHHHHHHHHHHTSSS-EEEEECSSH
T ss_pred cCCCEEEEECc-hHHHHHHHHHHHHCC-CEEEEECCH
Confidence 56789999998 599999999999999 999999843
|
| >4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=96.33 E-value=0.008 Score=56.89 Aligned_cols=92 Identities=14% Similarity=0.137 Sum_probs=54.6
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHC-CCcEEE-EeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCC
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKR-GDGVLG-LDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVP 193 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~-G~~V~~-~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~ 193 (469)
+++++|.|+|++|.+|+.+++.+.+. +.++.+ ++|........ ...... ++.. ++.-.++++++++.+
T Consensus 5 M~mikV~V~Ga~G~MG~~i~~~l~~~~~~eLv~~~d~~~~~~~G~---d~gel~---g~~~---gv~v~~dl~~ll~~~- 74 (272)
T 4f3y_A 5 MSSMKIAIAGASGRMGRMLIEAVLAAPDATLVGALDRTGSPQLGQ---DAGAFL---GKQT---GVALTDDIERVCAEA- 74 (272)
T ss_dssp -CCEEEEESSTTSHHHHHHHHHHHHCTTEEEEEEBCCTTCTTTTS---BTTTTT---TCCC---SCBCBCCHHHHHHHC-
T ss_pred ccccEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEEecCcccccc---cHHHHh---CCCC---CceecCCHHHHhcCC-
Confidence 34689999999999999999999876 567766 45543211000 000000 1000 121123455666655
Q ss_pred ccEEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCC
Q 012176 194 FTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNP 236 (469)
Q Consensus 194 ~d~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~ 236 (469)
|+||++... ..+...++.|.++|+
T Consensus 75 -DVVIDfT~p------------------~a~~~~~~~al~~G~ 98 (272)
T 4f3y_A 75 -DYLIDFTLP------------------EGTLVHLDAALRHDV 98 (272)
T ss_dssp -SEEEECSCH------------------HHHHHHHHHHHHHTC
T ss_pred -CEEEEcCCH------------------HHHHHHHHHHHHcCC
Confidence 999998632 234567777888886
|
| >4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=96.31 E-value=0.031 Score=57.09 Aligned_cols=98 Identities=17% Similarity=0.222 Sum_probs=68.1
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHh-hccCCcc
Q 012176 117 NGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKL-FDVVPFT 195 (469)
Q Consensus 117 ~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~-~~~~~~d 195 (469)
..++|+|.|| |-+|.++++.| +++++|.++.++. ...+..... .++..++.||.+|++.+++. ++.+ |
T Consensus 234 ~~~~v~I~Gg-G~ig~~lA~~L-~~~~~v~iIE~d~-----~r~~~la~~--l~~~~Vi~GD~td~~~L~ee~i~~~--D 302 (461)
T 4g65_A 234 PYRRIMIVGG-GNIGASLAKRL-EQTYSVKLIERNL-----QRAEKLSEE--LENTIVFCGDAADQELLTEENIDQV--D 302 (461)
T ss_dssp CCCEEEEECC-SHHHHHHHHHH-TTTSEEEEEESCH-----HHHHHHHHH--CTTSEEEESCTTCHHHHHHTTGGGC--S
T ss_pred cccEEEEEcc-hHHHHHHHHHh-hhcCceEEEecCH-----HHHHHHHHH--CCCceEEeccccchhhHhhcCchhh--c
Confidence 4578999996 99999999997 4569999998732 222222222 34789999999999987654 5666 9
Q ss_pred EEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEE
Q 012176 196 HVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWA 243 (469)
Q Consensus 196 ~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~ 243 (469)
++|-+-+. + +.|+ -+...|++.|++ ++|-.
T Consensus 303 ~~ia~T~~--------D-----e~Ni----~~~llAk~~gv~-kvIa~ 332 (461)
T 4g65_A 303 VFIALTNE--------D-----ETNI----MSAMLAKRMGAK-KVMVL 332 (461)
T ss_dssp EEEECCSC--------H-----HHHH----HHHHHHHHTTCS-EEEEE
T ss_pred EEEEcccC--------c-----HHHH----HHHHHHHHcCCc-ccccc
Confidence 99976543 1 1233 334457889987 66643
|
| >2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=96.30 E-value=0.0052 Score=60.24 Aligned_cols=76 Identities=20% Similarity=0.191 Sum_probs=50.0
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHC--CCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCC-HHHHHHhhccCC
Q 012176 117 NGMTVLVTGAAGFVGSHCSLALKKR--GDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLND-APLLTKLFDVVP 193 (469)
Q Consensus 117 ~~~~VlVtGatG~IG~~l~~~L~~~--G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d-~~~l~~~~~~~~ 193 (469)
.+.+|||+|| |.||...++.+... |.+|++++++.+ .+. ....+ +...+ .|..+ .+.++++-++.+
T Consensus 170 ~g~~VlV~Ga-G~vG~~aiqlak~~~~Ga~Vi~~~~~~~----~~~--~~~~l---Ga~~v-i~~~~~~~~~~~~~~g~g 238 (344)
T 2h6e_A 170 AEPVVIVNGI-GGLAVYTIQILKALMKNITIVGISRSKK----HRD--FALEL---GADYV-SEMKDAESLINKLTDGLG 238 (344)
T ss_dssp SSCEEEEECC-SHHHHHHHHHHHHHCTTCEEEEECSCHH----HHH--HHHHH---TCSEE-ECHHHHHHHHHHHHTTCC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHhcCCCEEEEEeCCHH----HHH--HHHHh---CCCEE-eccccchHHHHHhhcCCC
Confidence 6789999999 99999999999998 999999987332 111 11111 22211 23333 333444444446
Q ss_pred ccEEEEcccc
Q 012176 194 FTHVLHLAAQ 203 (469)
Q Consensus 194 ~d~Vih~Aa~ 203 (469)
+|+||+++|.
T Consensus 239 ~D~vid~~g~ 248 (344)
T 2h6e_A 239 ASIAIDLVGT 248 (344)
T ss_dssp EEEEEESSCC
T ss_pred ccEEEECCCC
Confidence 7999999975
|
| >1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A* | Back alignment and structure |
|---|
Probab=96.25 E-value=0.018 Score=53.55 Aligned_cols=32 Identities=28% Similarity=0.185 Sum_probs=28.0
Q ss_pred CEEEEEcCCChhHHHHHHHHHHC-CCcEEEEeC
Q 012176 119 MTVLVTGAAGFVGSHCSLALKKR-GDGVLGLDN 150 (469)
Q Consensus 119 ~~VlVtGatG~IG~~l~~~L~~~-G~~V~~~~r 150 (469)
|+|.|+|++|-+|+.+++.+.+. +++|.+...
T Consensus 1 mkV~V~Ga~G~mG~~i~~~~~~~~~~elva~~d 33 (245)
T 1p9l_A 1 MRVGVLGAKGKVGTTMVRAVAAADDLTLSAELD 33 (245)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHCTTCEEEEEEC
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEc
Confidence 58999999999999999999876 899886654
|
| >1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=96.24 E-value=0.018 Score=55.56 Aligned_cols=112 Identities=14% Similarity=0.073 Sum_probs=67.8
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCC--CcEEEEeCCCCCCChhHHHHHHHhh-----ccCCeEEEEecCCCHHHHHHhhcc
Q 012176 119 MTVLVTGAAGFVGSHCSLALKKRG--DGVLGLDNFNSYYDPSLKRARQKLL-----QKHQVFIVEGDLNDAPLLTKLFDV 191 (469)
Q Consensus 119 ~~VlVtGatG~IG~~l~~~L~~~G--~~V~~~~r~~~~~~~~~~~~~~~~~-----~~~~v~~v~~Dl~d~~~l~~~~~~ 191 (469)
|+|.|+| +|.+|..++..|++.| ++|++++|+.+ .......... ....+.+... |. +.+++
T Consensus 2 ~kI~VIG-aG~~G~~la~~L~~~g~~~~V~l~d~~~~----~~~~~~~~l~~~~~~~~~~~~~~~~---d~----~~~~~ 69 (309)
T 1hyh_A 2 RKIGIIG-LGNVGAAVAHGLIAQGVADDYVFIDANEA----KVKADQIDFQDAMANLEAHGNIVIN---DW----AALAD 69 (309)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHHTCCSEEEEECSSHH----HHHHHHHHHHHHGGGSSSCCEEEES---CG----GGGTT
T ss_pred CEEEEEC-CCHHHHHHHHHHHhCCCCCEEEEEcCCHH----HHHHHHHHHHhhhhhcCCCeEEEeC---CH----HHhCC
Confidence 6899999 6999999999999999 89999998532 1111111111 1112333322 32 34666
Q ss_pred CCccEEEEcccccCh--hhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEc
Q 012176 192 VPFTHVLHLAAQAGV--RYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWAS 244 (469)
Q Consensus 192 ~~~d~Vih~Aa~~~~--~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~S 244 (469)
+ |+||-+++.... +.......+....|+.....+++.+.+......+|.++
T Consensus 70 a--DvViiav~~~~~~~~~~g~~r~~l~~~n~~i~~~i~~~i~~~~~~~~ii~~t 122 (309)
T 1hyh_A 70 A--DVVISTLGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESGFHGVLVVIS 122 (309)
T ss_dssp C--SEEEECCSCGGGTC-------CTTHHHHHHHHHHHHHHHHHTTCCSEEEECS
T ss_pred C--CEEEEecCCcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEEc
Confidence 7 999998875221 00111223456678888888888887765543455544
|
| >2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A* | Back alignment and structure |
|---|
Probab=96.23 E-value=0.0032 Score=62.35 Aligned_cols=74 Identities=15% Similarity=0.152 Sum_probs=49.2
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCC--HHHHHHhhccCCcc
Q 012176 118 GMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLND--APLLTKLFDVVPFT 195 (469)
Q Consensus 118 ~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d--~~~l~~~~~~~~~d 195 (469)
+++|||+|| |.||..+++.+...|++|+++++... ....... ...-+...+ | .+ .+.+.+ .. .++|
T Consensus 181 g~~VlV~Ga-G~vG~~~~q~a~~~Ga~Vi~~~~~~~-~~~~~~~-----~~~~ga~~v--~-~~~~~~~~~~-~~-~~~d 248 (366)
T 2cdc_A 181 CRKVLVVGT-GPIGVLFTLLFRTYGLEVWMANRREP-TEVEQTV-----IEETKTNYY--N-SSNGYDKLKD-SV-GKFD 248 (366)
T ss_dssp TCEEEEESC-HHHHHHHHHHHHHHTCEEEEEESSCC-CHHHHHH-----HHHHTCEEE--E-CTTCSHHHHH-HH-CCEE
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCEEEEEeCCcc-chHHHHH-----HHHhCCcee--c-hHHHHHHHHH-hC-CCCC
Confidence 889999999 99999999999999999999998541 0011111 111244544 5 44 122333 22 3569
Q ss_pred EEEEcccc
Q 012176 196 HVLHLAAQ 203 (469)
Q Consensus 196 ~Vih~Aa~ 203 (469)
+||+++|.
T Consensus 249 ~vid~~g~ 256 (366)
T 2cdc_A 249 VIIDATGA 256 (366)
T ss_dssp EEEECCCC
T ss_pred EEEECCCC
Confidence 99999985
|
| >1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.22 E-value=0.063 Score=52.56 Aligned_cols=77 Identities=21% Similarity=0.119 Sum_probs=50.0
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCC----HHHHHHhhc-
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLND----APLLTKLFD- 190 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d----~~~l~~~~~- 190 (469)
..+.+|||+|+ |.+|...++.+...|.+|++++++.+ .+. ... .-+...+ .|..+ .+.+.+...
T Consensus 167 ~~g~~VlV~Ga-G~vG~~a~qla~~~Ga~Vi~~~~~~~----~~~--~~~---~lGa~~~-~~~~~~~~~~~~i~~~~~~ 235 (352)
T 1e3j_A 167 QLGTTVLVIGA-GPIGLVSVLAAKAYGAFVVCTARSPR----RLE--VAK---NCGADVT-LVVDPAKEEESSIIERIRS 235 (352)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHH----HHH--HHH---HTTCSEE-EECCTTTSCHHHHHHHHHH
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHcCCEEEEEcCCHH----HHH--HHH---HhCCCEE-EcCcccccHHHHHHHHhcc
Confidence 46789999997 99999999999999999999987322 111 111 1122211 23332 334444443
Q ss_pred --cCCccEEEEcccc
Q 012176 191 --VVPFTHVLHLAAQ 203 (469)
Q Consensus 191 --~~~~d~Vih~Aa~ 203 (469)
+.++|+||+++|.
T Consensus 236 ~~g~g~D~vid~~g~ 250 (352)
T 1e3j_A 236 AIGDLPNVTIDCSGN 250 (352)
T ss_dssp HSSSCCSEEEECSCC
T ss_pred ccCCCCCEEEECCCC
Confidence 3457999999975
|
| >4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=96.21 E-value=0.026 Score=54.69 Aligned_cols=68 Identities=15% Similarity=0.091 Sum_probs=48.1
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCcc
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFT 195 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~d 195 (469)
..+|+|.|+|. |.+|..+++.|++.|++|++.+|+.+ +...+...++... .+++++++++ |
T Consensus 29 ~~~~~I~iIG~-G~mG~~~a~~l~~~G~~V~~~dr~~~---------~~~~l~~~g~~~~-------~~~~e~~~~a--D 89 (320)
T 4dll_A 29 PYARKITFLGT-GSMGLPMARRLCEAGYALQVWNRTPA---------RAASLAALGATIH-------EQARAAARDA--D 89 (320)
T ss_dssp CCCSEEEEECC-TTTHHHHHHHHHHTTCEEEEECSCHH---------HHHHHHTTTCEEE-------SSHHHHHTTC--S
T ss_pred cCCCEEEEECc-cHHHHHHHHHHHhCCCeEEEEcCCHH---------HHHHHHHCCCEee-------CCHHHHHhcC--C
Confidence 46689999985 99999999999999999999998432 1111222243321 2355677777 9
Q ss_pred EEEEccc
Q 012176 196 HVLHLAA 202 (469)
Q Consensus 196 ~Vih~Aa 202 (469)
+||-+..
T Consensus 90 vVi~~vp 96 (320)
T 4dll_A 90 IVVSMLE 96 (320)
T ss_dssp EEEECCS
T ss_pred EEEEECC
Confidence 9998763
|
| >3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A | Back alignment and structure |
|---|
Probab=96.20 E-value=0.025 Score=55.62 Aligned_cols=108 Identities=19% Similarity=0.128 Sum_probs=67.5
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCC-cEEEEeCCCCCC--------------ChhHHHHHH----HhhccCCeEEEE
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGD-GVLGLDNFNSYY--------------DPSLKRARQ----KLLQKHQVFIVE 176 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~-~V~~~~r~~~~~--------------~~~~~~~~~----~~~~~~~v~~v~ 176 (469)
..+.+|+|.|+ |.+|..+++.|...|. +++++|+..-.. -..+..... .....-.++.+.
T Consensus 116 L~~~~VlvvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~v~~~~ 194 (353)
T 3h5n_A 116 LKNAKVVILGC-GGIGNHVSVILATSGIGEIILIDNDQIENTNLTRQVLFSEDDVGKNKTEVIKRELLKRNSEISVSEIA 194 (353)
T ss_dssp HHTCEEEEECC-SHHHHHHHHHHHHHTCSEEEEEECCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEEE
T ss_pred HhCCeEEEECC-CHHHHHHHHHHHhCCCCeEEEECCCcCcccccccccCCChHHCCChHHHHHHHHHHHHCCCCeEEEee
Confidence 45678999997 8999999999999996 688887643110 000111111 111223567777
Q ss_pred ecCCCHHHHHHhhccCCccEEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcC
Q 012176 177 GDLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASS 245 (469)
Q Consensus 177 ~Dl~d~~~l~~~~~~~~~d~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS 245 (469)
.++++...+.. ++++ |+||++..... . .-..+-++|.+.++. +|+.+.
T Consensus 195 ~~i~~~~~~~~-~~~~--DlVvd~~Dn~~---------~-------~r~~ln~~c~~~~~p--~i~~~~ 242 (353)
T 3h5n_A 195 LNINDYTDLHK-VPEA--DIWVVSADHPF---------N-------LINWVNKYCVRANQP--YINAGY 242 (353)
T ss_dssp CCCCSGGGGGG-SCCC--SEEEECCCCST---------T-------HHHHHHHHHHHTTCC--EEEEEE
T ss_pred cccCchhhhhH-hccC--CEEEEecCChH---------H-------HHHHHHHHHHHhCCC--EEEEEE
Confidence 77777665666 7766 99999763311 0 123345678888874 776654
|
| >2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A* | Back alignment and structure |
|---|
Probab=96.20 E-value=0.015 Score=57.83 Aligned_cols=76 Identities=18% Similarity=0.125 Sum_probs=53.7
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCcc
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFT 195 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~d 195 (469)
..+++|+|+|+ |.||..+++.+...|.+|++++|... .+... ..... ..+ ..+..+.+.+.+++.++ |
T Consensus 166 l~g~~V~ViG~-G~iG~~~a~~a~~~Ga~V~~~d~~~~----~l~~~-~~~~g-~~~---~~~~~~~~~l~~~l~~a--D 233 (377)
T 2vhw_A 166 VEPADVVVIGA-GTAGYNAARIANGMGATVTVLDINID----KLRQL-DAEFC-GRI---HTRYSSAYELEGAVKRA--D 233 (377)
T ss_dssp BCCCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHH----HHHHH-HHHTT-TSS---EEEECCHHHHHHHHHHC--S
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEeCCHH----HHHHH-HHhcC-Cee---EeccCCHHHHHHHHcCC--C
Confidence 56789999998 99999999999999999999998432 11111 11111 122 12344566788888877 9
Q ss_pred EEEEcccc
Q 012176 196 HVLHLAAQ 203 (469)
Q Consensus 196 ~Vih~Aa~ 203 (469)
+||++++.
T Consensus 234 vVi~~~~~ 241 (377)
T 2vhw_A 234 LVIGAVLV 241 (377)
T ss_dssp EEEECCCC
T ss_pred EEEECCCc
Confidence 99998875
|
| >2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=96.20 E-value=0.027 Score=54.35 Aligned_cols=114 Identities=17% Similarity=0.112 Sum_probs=73.1
Q ss_pred EEEEEcCCChhHHHHHHHHHHCCC-cEEEEeCCCCCCChhHHHHHHHh-hccCCeEEEEecCCCHHHHHHhhccCCccEE
Q 012176 120 TVLVTGAAGFVGSHCSLALKKRGD-GVLGLDNFNSYYDPSLKRARQKL-LQKHQVFIVEGDLNDAPLLTKLFDVVPFTHV 197 (469)
Q Consensus 120 ~VlVtGatG~IG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~-~~~~~v~~v~~Dl~d~~~l~~~~~~~~~d~V 197 (469)
+|.|+|| |.+|..++..|+..|. +|+++|+..+............. .....+.+... +| . +.++++ |+|
T Consensus 1 KI~IiGa-G~vG~~~a~~l~~~~l~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~~t--~d---~-~a~~~a--D~V 71 (308)
T 2d4a_B 1 MITILGA-GKVGMATAVMLMMRGYDDLLLIARTPGKPQGEALDLAHAAAELGVDIRISGS--NS---Y-EDMRGS--DIV 71 (308)
T ss_dssp CEEEECC-SHHHHHHHHHHHHHTCSCEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEEE--SC---G-GGGTTC--SEE
T ss_pred CEEEECc-CHHHHHHHHHHHhCCCCEEEEEcCChhhHHHHHHHHHHhhhhcCCCeEEEEC--CC---H-HHhCCC--CEE
Confidence 4889998 9999999999998887 79999986542211111100100 01113333321 22 2 357788 999
Q ss_pred EEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEc
Q 012176 198 LHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWAS 244 (469)
Q Consensus 198 ih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~S 244 (469)
|-.++.... ......+....|+.-.+.+++.+.+......+|.+|
T Consensus 72 i~~ag~~~k--~G~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~t 116 (308)
T 2d4a_B 72 LVTAGIGRK--PGMTREQLLEANANTMADLAEKIKAYAKDAIVVITT 116 (308)
T ss_dssp EECCSCCCC--SSCCTHHHHHHHHHHHHHHHHHHHHHCTTCEEEECC
T ss_pred EEeCCCCCC--CCCcHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 999886321 123445678889999999999988876554667665
|
| >3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021} | Back alignment and structure |
|---|
Probab=96.19 E-value=0.014 Score=57.72 Aligned_cols=78 Identities=22% Similarity=0.134 Sum_probs=51.2
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeE-EEEecCCC-HHHHHHhhccCC
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVF-IVEGDLND-APLLTKLFDVVP 193 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~-~v~~Dl~d-~~~l~~~~~~~~ 193 (469)
..+.+|||+| +|.||...++.+...|.+|+++++..+ .+.. ...+ +.. ++..+-.| .+.+.++..+.+
T Consensus 188 ~~g~~VlV~G-~G~vG~~a~qla~~~Ga~Vi~~~~~~~----~~~~--~~~l---Ga~~vi~~~~~~~~~~v~~~~~g~g 257 (363)
T 3uog_A 188 RAGDRVVVQG-TGGVALFGLQIAKATGAEVIVTSSSRE----KLDR--AFAL---GADHGINRLEEDWVERVYALTGDRG 257 (363)
T ss_dssp CTTCEEEEES-SBHHHHHHHHHHHHTTCEEEEEESCHH----HHHH--HHHH---TCSEEEETTTSCHHHHHHHHHTTCC
T ss_pred CCCCEEEEEC-CCHHHHHHHHHHHHcCCEEEEEecCch----hHHH--HHHc---CCCEEEcCCcccHHHHHHHHhCCCC
Confidence 5678999999 799999999999999999999997432 1111 1111 222 22211112 234555555557
Q ss_pred ccEEEEcccc
Q 012176 194 FTHVLHLAAQ 203 (469)
Q Consensus 194 ~d~Vih~Aa~ 203 (469)
+|+||+++|.
T Consensus 258 ~D~vid~~g~ 267 (363)
T 3uog_A 258 ADHILEIAGG 267 (363)
T ss_dssp EEEEEEETTS
T ss_pred ceEEEECCCh
Confidence 8999999984
|
| >2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A* | Back alignment and structure |
|---|
Probab=96.18 E-value=0.012 Score=57.66 Aligned_cols=96 Identities=16% Similarity=0.124 Sum_probs=60.4
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCC-cEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHH---HHHHhhccC
Q 012176 117 NGMTVLVTGAAGFVGSHCSLALKKRGD-GVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAP---LLTKLFDVV 192 (469)
Q Consensus 117 ~~~~VlVtGatG~IG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~---~l~~~~~~~ 192 (469)
.+.+|||+|| |.+|...++.+...|+ +|++++++.+ +....... ... ..|..+.+ .+.++. +.
T Consensus 164 ~g~~VlV~Ga-G~vG~~~~q~a~~~Ga~~Vi~~~~~~~---------~~~~~~~l-a~~-v~~~~~~~~~~~~~~~~-~~ 230 (343)
T 2dq4_A 164 SGKSVLITGA-GPIGLMAAMVVRASGAGPILVSDPNPY---------RLAFARPY-ADR-LVNPLEEDLLEVVRRVT-GS 230 (343)
T ss_dssp TTSCEEEECC-SHHHHHHHHHHHHTTCCSEEEECSCHH---------HHGGGTTT-CSE-EECTTTSCHHHHHHHHH-SS
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHH---------HHHHHHHh-HHh-ccCcCccCHHHHHHHhc-CC
Confidence 6789999999 9999999999999999 9999997321 12222211 111 13444322 233333 44
Q ss_pred CccEEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcC
Q 012176 193 PFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASS 245 (469)
Q Consensus 193 ~~d~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS 245 (469)
++|+||+++|.. ......++.++..| ++|.++.
T Consensus 231 g~D~vid~~g~~-----------------~~~~~~~~~l~~~G---~iv~~g~ 263 (343)
T 2dq4_A 231 GVEVLLEFSGNE-----------------AAIHQGLMALIPGG---EARILGI 263 (343)
T ss_dssp CEEEEEECSCCH-----------------HHHHHHHHHEEEEE---EEEECCC
T ss_pred CCCEEEECCCCH-----------------HHHHHHHHHHhcCC---EEEEEec
Confidence 679999999741 12334555555444 7887764
|
| >2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A* | Back alignment and structure |
|---|
Probab=96.17 E-value=0.008 Score=59.22 Aligned_cols=74 Identities=15% Similarity=0.234 Sum_probs=49.4
Q ss_pred CEEEEEcCCChhHHHH-HHHH-HHCCCc-EEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHH--HHHHhhccCC
Q 012176 119 MTVLVTGAAGFVGSHC-SLAL-KKRGDG-VLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAP--LLTKLFDVVP 193 (469)
Q Consensus 119 ~~VlVtGatG~IG~~l-~~~L-~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~--~l~~~~~~~~ 193 (469)
.+|||+|| |.+|... ++.+ ...|.+ |+++++..+. +..+... ..-+...+ |..+.+ .+.++ .+ +
T Consensus 174 ~~VlV~Ga-G~vG~~a~iqla~k~~Ga~~Vi~~~~~~~~-~~~~~~~-----~~lGa~~v--~~~~~~~~~i~~~-~g-g 242 (357)
T 2b5w_A 174 SSAFVLGN-GSLGLLTLAMLKVDDKGYENLYCLGRRDRP-DPTIDII-----EELDATYV--DSRQTPVEDVPDV-YE-Q 242 (357)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHCTTCCCEEEEEECCCSS-CHHHHHH-----HHTTCEEE--ETTTSCGGGHHHH-SC-C
T ss_pred CEEEEECC-CHHHHHHHHHHHHHHcCCcEEEEEeCCccc-HHHHHHH-----HHcCCccc--CCCccCHHHHHHh-CC-C
Confidence 89999999 9999999 8888 778997 9999985430 0011111 12255555 554422 24444 45 7
Q ss_pred ccEEEEcccc
Q 012176 194 FTHVLHLAAQ 203 (469)
Q Consensus 194 ~d~Vih~Aa~ 203 (469)
+|+||++.|.
T Consensus 243 ~Dvvid~~g~ 252 (357)
T 2b5w_A 243 MDFIYEATGF 252 (357)
T ss_dssp EEEEEECSCC
T ss_pred CCEEEECCCC
Confidence 7999999975
|
| >2ozp_A N-acetyl-gamma-glutamyl-phosphate reductase; amino acid biosynthesis, structural genomics, riken structur genomics/proteomics initiative; 2.01A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.17 E-value=0.006 Score=59.97 Aligned_cols=97 Identities=12% Similarity=0.101 Sum_probs=57.9
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHCCC-cEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCccE
Q 012176 118 GMTVLVTGAAGFVGSHCSLALKKRGD-GVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTH 196 (469)
Q Consensus 118 ~~~VlVtGatG~IG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~d~ 196 (469)
+++|.|.||+|++|+.+++.|.++.+ +|+.+.+...... ...... ..+. +. ....+.+.+ + +.++ |+
T Consensus 4 ~~kV~IiGAtG~iG~~llr~L~~~p~~elv~v~s~~~~g~-~~~~~~-~~~~--g~--~~~~~~~~~---~-~~~v--Dv 71 (345)
T 2ozp_A 4 KKTLSIVGASGYAGGEFLRLALSHPYLEVKQVTSRRFAGE-PVHFVH-PNLR--GR--TNLKFVPPE---K-LEPA--DI 71 (345)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHTCTTEEEEEEBCSTTTTS-BGGGTC-GGGT--TT--CCCBCBCGG---G-CCCC--SE
T ss_pred CCEEEEECCCCHHHHHHHHHHHcCCCcEEEEEECchhhCc-hhHHhC-chhc--Cc--ccccccchh---H-hcCC--CE
Confidence 47899999999999999999998764 7777765322111 010000 0011 10 001122222 2 4555 99
Q ss_pred EEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcCc
Q 012176 197 VLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSS 246 (469)
Q Consensus 197 Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS~ 246 (469)
||.+.+.. ....++..+.+.|. ++|-.|+.
T Consensus 72 V~~a~g~~------------------~s~~~a~~~~~aG~--~VId~Sa~ 101 (345)
T 2ozp_A 72 LVLALPHG------------------VFAREFDRYSALAP--VLVDLSAD 101 (345)
T ss_dssp EEECCCTT------------------HHHHTHHHHHTTCS--EEEECSST
T ss_pred EEEcCCcH------------------HHHHHHHHHHHCCC--EEEEcCcc
Confidence 99998752 13456666777776 68888874
|
| >4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=96.09 E-value=0.021 Score=56.38 Aligned_cols=76 Identities=18% Similarity=0.160 Sum_probs=48.4
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHH-CCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCC--HHHHHHhhccCC
Q 012176 117 NGMTVLVTGAAGFVGSHCSLALKK-RGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLND--APLLTKLFDVVP 193 (469)
Q Consensus 117 ~~~~VlVtGatG~IG~~l~~~L~~-~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d--~~~l~~~~~~~~ 193 (469)
.+.+|||+||+|.+|...++.+.. .|.+|+++++..+ +.+....-+...+ .|..+ .+.+.++ .+.+
T Consensus 171 ~g~~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~~~~~~~---------~~~~~~~lGad~v-i~~~~~~~~~v~~~-~~~g 239 (363)
T 4dvj_A 171 AAPAILIVGGAGGVGSIAVQIARQRTDLTVIATASRPE---------TQEWVKSLGAHHV-IDHSKPLAAEVAAL-GLGA 239 (363)
T ss_dssp SEEEEEEESTTSHHHHHHHHHHHHHCCSEEEEECSSHH---------HHHHHHHTTCSEE-ECTTSCHHHHHHTT-CSCC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHhcCCEEEEEeCCHH---------HHHHHHHcCCCEE-EeCCCCHHHHHHHh-cCCC
Confidence 578999999999999999988876 5899999987322 1111111233222 23322 1223333 3346
Q ss_pred ccEEEEcccc
Q 012176 194 FTHVLHLAAQ 203 (469)
Q Consensus 194 ~d~Vih~Aa~ 203 (469)
+|+||+++|.
T Consensus 240 ~Dvvid~~g~ 249 (363)
T 4dvj_A 240 PAFVFSTTHT 249 (363)
T ss_dssp EEEEEECSCH
T ss_pred ceEEEECCCc
Confidence 7999999874
|
| >4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A* | Back alignment and structure |
|---|
Probab=96.08 E-value=0.0068 Score=57.77 Aligned_cols=36 Identities=25% Similarity=0.262 Sum_probs=31.9
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCC
Q 012176 117 NGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNS 153 (469)
Q Consensus 117 ~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~ 153 (469)
+.++|.|+|+ |.+|..+++.|++.|++|++.+|+.+
T Consensus 3 ~~~kV~VIGa-G~mG~~iA~~la~~G~~V~l~d~~~~ 38 (283)
T 4e12_A 3 GITNVTVLGT-GVLGSQIAFQTAFHGFAVTAYDINTD 38 (283)
T ss_dssp SCCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSHH
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 3578999986 99999999999999999999998554
|
| >1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=95.97 E-value=0.013 Score=57.82 Aligned_cols=77 Identities=19% Similarity=0.144 Sum_probs=51.3
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHC-CCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCH--HHHHHhhccC
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKR-GDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDA--PLLTKLFDVV 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~--~~l~~~~~~~ 192 (469)
..+.+|||+|| |.+|...++.+... |.+|++++++.+ +.+....-+...+ .|..+. +.+.++-.+.
T Consensus 185 ~~g~~VlV~Ga-G~vG~~avqlak~~~Ga~Vi~~~~~~~---------~~~~~~~lGa~~v-i~~~~~~~~~v~~~~~g~ 253 (359)
T 1h2b_A 185 YPGAYVAIVGV-GGLGHIAVQLLKVMTPATVIALDVKEE---------KLKLAERLGADHV-VDARRDPVKQVMELTRGR 253 (359)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHHCCCEEEEEESSHH---------HHHHHHHTTCSEE-EETTSCHHHHHHHHTTTC
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCCHH---------HHHHHHHhCCCEE-EeccchHHHHHHHHhCCC
Confidence 46789999999 99999999999988 999999997321 1111111233222 244443 3444444444
Q ss_pred CccEEEEcccc
Q 012176 193 PFTHVLHLAAQ 203 (469)
Q Consensus 193 ~~d~Vih~Aa~ 203 (469)
++|+||+++|.
T Consensus 254 g~Dvvid~~G~ 264 (359)
T 1h2b_A 254 GVNVAMDFVGS 264 (359)
T ss_dssp CEEEEEESSCC
T ss_pred CCcEEEECCCC
Confidence 67999999975
|
| >1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A* | Back alignment and structure |
|---|
Probab=95.97 E-value=0.017 Score=54.61 Aligned_cols=36 Identities=19% Similarity=0.154 Sum_probs=32.7
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCC
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFN 152 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~ 152 (469)
..+++|+|+|+ |.+|+.++..|++.|++|++++|..
T Consensus 117 ~~~~~vlvlGa-Gg~g~a~a~~L~~~G~~v~v~~R~~ 152 (272)
T 1p77_A 117 RPNQHVLILGA-GGATKGVLLPLLQAQQNIVLANRTF 152 (272)
T ss_dssp CTTCEEEEECC-SHHHHTTHHHHHHTTCEEEEEESSH
T ss_pred cCCCEEEEECC-cHHHHHHHHHHHHCCCEEEEEECCH
Confidence 56789999998 8899999999999999999999943
|
| >1oi7_A Succinyl-COA synthetase alpha chain; SCS, ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.23A {Thermus thermophilus} SCOP: c.2.1.8 c.23.4.1 | Back alignment and structure |
|---|
Probab=95.97 E-value=0.035 Score=52.95 Aligned_cols=92 Identities=11% Similarity=0.012 Sum_probs=58.7
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCccE
Q 012176 117 NGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTH 196 (469)
Q Consensus 117 ~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~d~ 196 (469)
+.++|+|.|++|-.|+.+++.|.+.|++++.......... +..++.++ .+++++.+..++|+
T Consensus 6 ~~~~VaVvGasG~~G~~~~~~l~~~g~~~v~~VnP~~~g~-----------~i~G~~vy-------~sl~el~~~~~~Dv 67 (288)
T 1oi7_A 6 RETRVLVQGITGREGQFHTKQMLTYGTKIVAGVTPGKGGM-----------EVLGVPVY-------DTVKEAVAHHEVDA 67 (288)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECTTCTTC-----------EETTEEEE-------SSHHHHHHHSCCSE
T ss_pred CCCEEEEECCCCCHHHHHHHHHHHcCCeEEEEECCCCCCc-----------eECCEEee-------CCHHHHhhcCCCCE
Confidence 4578999999999999999999999998653332111000 01133322 22445555334599
Q ss_pred EEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcC
Q 012176 197 VLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASS 245 (469)
Q Consensus 197 Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS 245 (469)
+|.+.-. ..+..+++.|.+.|++ .+|.+++
T Consensus 68 ~Ii~vp~------------------~~~~~~~~ea~~~Gi~-~vVi~t~ 97 (288)
T 1oi7_A 68 SIIFVPA------------------PAAADAALEAAHAGIP-LIVLITE 97 (288)
T ss_dssp EEECCCH------------------HHHHHHHHHHHHTTCS-EEEECCS
T ss_pred EEEecCH------------------HHHHHHHHHHHHCCCC-EEEEECC
Confidence 9977532 2456788888888985 5676664
|
| >1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=95.94 E-value=0.0072 Score=58.70 Aligned_cols=73 Identities=29% Similarity=0.206 Sum_probs=46.1
Q ss_pred EEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCH--HHHHHhhccCCccEE
Q 012176 120 TVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDA--PLLTKLFDVVPFTHV 197 (469)
Q Consensus 120 ~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~--~~l~~~~~~~~~d~V 197 (469)
+|||+||+|.+|...++.+...|.+|+++++..+. +...+ . + +...+ .|..+. +.+.++ .+.++|+|
T Consensus 152 ~VlV~Ga~G~vG~~~~q~a~~~Ga~vi~~~~~~~~----~~~~~-~-l---Ga~~~-i~~~~~~~~~~~~~-~~~~~d~v 220 (328)
T 1xa0_A 152 PVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAE----HDYLR-V-L---GAKEV-LAREDVMAERIRPL-DKQRWAAA 220 (328)
T ss_dssp CEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTC----HHHHH-H-T---TCSEE-EECC---------C-CSCCEEEE
T ss_pred eEEEecCCCHHHHHHHHHHHHCCCEEEEEECCHHH----HHHHH-H-c---CCcEE-EecCCcHHHHHHHh-cCCcccEE
Confidence 79999999999999999999999999999986441 22221 1 1 22211 244433 122222 23367999
Q ss_pred EEcccc
Q 012176 198 LHLAAQ 203 (469)
Q Consensus 198 ih~Aa~ 203 (469)
|+++|.
T Consensus 221 id~~g~ 226 (328)
T 1xa0_A 221 VDPVGG 226 (328)
T ss_dssp EECSTT
T ss_pred EECCcH
Confidence 999975
|
| >3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP} | Back alignment and structure |
|---|
Probab=95.90 E-value=0.031 Score=53.09 Aligned_cols=34 Identities=18% Similarity=0.283 Sum_probs=31.6
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCC
Q 012176 118 GMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNF 151 (469)
Q Consensus 118 ~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~ 151 (469)
+|+|.|+|++|.+|..+++.|.+.|++|++.+|+
T Consensus 11 mm~I~iIG~tG~mG~~la~~l~~~g~~V~~~~r~ 44 (286)
T 3c24_A 11 PKTVAILGAGGKMGARITRKIHDSAHHLAAIEIA 44 (286)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHSSSEEEEECCS
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECC
Confidence 4699999999999999999999999999999984
|
| >2r00_A Aspartate-semialdehyde dehydrogenase; conformational change, half-OF-sites-reactivity, protein evolution, sequence homology; HET: HTI; 2.03A {Vibrio cholerae} PDB: 2qz9_A* 2r00_C* | Back alignment and structure |
|---|
Probab=95.90 E-value=0.017 Score=56.39 Aligned_cols=94 Identities=17% Similarity=0.147 Sum_probs=56.9
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHCC---CcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCc
Q 012176 118 GMTVLVTGAAGFVGSHCSLALKKRG---DGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPF 194 (469)
Q Consensus 118 ~~~VlVtGatG~IG~~l~~~L~~~G---~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~ 194 (469)
+++|.|.||+|++|+.+++.|.+++ .+|+.+....... +... +....+.+ .|. |++ .++++
T Consensus 3 ~~kV~I~GAtG~iG~~llr~L~~~~~p~~elv~i~s~~~~G-~~~~------~~~~~i~~--~~~-~~~----~~~~v-- 66 (336)
T 2r00_A 3 QFNVAIFGATGAVGETMLEVLQEREFPVDELFLLASERSEG-KTYR------FNGKTVRV--QNV-EEF----DWSQV-- 66 (336)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHTTCCEEEEEEEECTTTTT-CEEE------ETTEEEEE--EEG-GGC----CGGGC--
T ss_pred ccEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEEECCCCCC-Ccee------ecCceeEE--ecC-ChH----HhcCC--
Confidence 4789999999999999999999984 3666665311110 0000 11112222 222 122 33556
Q ss_pred cEEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcCcc
Q 012176 195 THVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSS 247 (469)
Q Consensus 195 d~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS~~ 247 (469)
|+||-+.+.. .....+..+.+.|. ++|-.|+..
T Consensus 67 DvVf~a~g~~------------------~s~~~a~~~~~~G~--~vId~s~~~ 99 (336)
T 2r00_A 67 HIALFSAGGE------------------LSAKWAPIAAEAGV--VVIDNTSHF 99 (336)
T ss_dssp SEEEECSCHH------------------HHHHHHHHHHHTTC--EEEECSSTT
T ss_pred CEEEECCCch------------------HHHHHHHHHHHcCC--EEEEcCCcc
Confidence 9999988651 13556666777786 688888753
|
| >2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=95.89 E-value=0.023 Score=56.80 Aligned_cols=76 Identities=21% Similarity=0.202 Sum_probs=52.5
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCC-cEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCC----HHHHHHhhc
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGD-GVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLND----APLLTKLFD 190 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d----~~~l~~~~~ 190 (469)
..+.+|||+|+ |.||...++.+...|. +|++++++.+ +.+....-+..+ .|..+ .+.+.++..
T Consensus 184 ~~g~~VlV~Ga-G~vG~~aiqlak~~Ga~~Vi~~~~~~~---------~~~~a~~lGa~~--i~~~~~~~~~~~~~~~~~ 251 (398)
T 2dph_A 184 KPGSHVYIAGA-GPVGRCAAAGARLLGAACVIVGDQNPE---------RLKLLSDAGFET--IDLRNSAPLRDQIDQILG 251 (398)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHHTCSEEEEEESCHH---------HHHHHHTTTCEE--EETTSSSCHHHHHHHHHS
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCHH---------HHHHHHHcCCcE--EcCCCcchHHHHHHHHhC
Confidence 46789999997 9999999998888898 8999987322 112222335543 35443 334555555
Q ss_pred cCCccEEEEcccc
Q 012176 191 VVPFTHVLHLAAQ 203 (469)
Q Consensus 191 ~~~~d~Vih~Aa~ 203 (469)
+.++|+||++.|.
T Consensus 252 g~g~Dvvid~~g~ 264 (398)
T 2dph_A 252 KPEVDCGVDAVGF 264 (398)
T ss_dssp SSCEEEEEECSCT
T ss_pred CCCCCEEEECCCC
Confidence 5467999999985
|
| >3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A* | Back alignment and structure |
|---|
Probab=95.88 E-value=0.039 Score=53.74 Aligned_cols=36 Identities=33% Similarity=0.305 Sum_probs=30.0
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCC-cEEEEeCCC
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGD-GVLGLDNFN 152 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~-~V~~~~r~~ 152 (469)
..+.+|+|.|+ |.+|.++++.|...|. +++++|+..
T Consensus 32 L~~~~VlIvGa-GGlGs~va~~La~aGVg~ItlvD~D~ 68 (340)
T 3rui_A 32 IKNTKVLLLGA-GTLGCYVSRALIAWGVRKITFVDNGT 68 (340)
T ss_dssp HHTCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECCCB
T ss_pred HhCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEecCCE
Confidence 35679999997 9999999999999996 677777643
|
| >1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=95.86 E-value=0.048 Score=53.90 Aligned_cols=76 Identities=20% Similarity=0.249 Sum_probs=49.2
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCC-cEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCC-----HHHHHHhh
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGD-GVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLND-----APLLTKLF 189 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d-----~~~l~~~~ 189 (469)
..+.+|||+|+ |.+|...++.+...|. +|++++++.+ .+...+ . -+...+ .|..+ .+.+.++.
T Consensus 191 ~~g~~VlV~Ga-G~vG~~a~qla~~~Ga~~Vi~~~~~~~----~~~~~~-~----lGa~~v-i~~~~~~~~~~~~~~~~~ 259 (374)
T 1cdo_A 191 EPGSTCAVFGL-GAVGLAAVMGCHSAGAKRIIAVDLNPD----KFEKAK-V----FGATDF-VNPNDHSEPISQVLSKMT 259 (374)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGG----GHHHHH-H----TTCCEE-ECGGGCSSCHHHHHHHHH
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCHH----HHHHHH-H----hCCceE-EeccccchhHHHHHHHHh
Confidence 46789999996 9999999999999998 7999987443 112111 1 133222 24332 12334443
Q ss_pred ccCCccEEEEcccc
Q 012176 190 DVVPFTHVLHLAAQ 203 (469)
Q Consensus 190 ~~~~~d~Vih~Aa~ 203 (469)
.+ ++|+||+++|.
T Consensus 260 ~~-g~D~vid~~g~ 272 (374)
T 1cdo_A 260 NG-GVDFSLECVGN 272 (374)
T ss_dssp TS-CBSEEEECSCC
T ss_pred CC-CCCEEEECCCC
Confidence 44 67999999975
|
| >3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=95.86 E-value=0.054 Score=54.22 Aligned_cols=77 Identities=19% Similarity=0.146 Sum_probs=50.8
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCC-cEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCH---HHHHHhhcc
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGD-GVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDA---PLLTKLFDV 191 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~---~~l~~~~~~ 191 (469)
..+.+|||+|+ |.+|...++.+...|. +|++++++.+ +......+ +...+ .|..+. +.+.++..+
T Consensus 212 ~~g~~VlV~Ga-G~vG~~aiqlak~~Ga~~Vi~~~~~~~------~~~~~~~l---Ga~~v-i~~~~~~~~~~i~~~t~g 280 (404)
T 3ip1_A 212 RPGDNVVILGG-GPIGLAAVAILKHAGASKVILSEPSEV------RRNLAKEL---GADHV-IDPTKENFVEAVLDYTNG 280 (404)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCHH------HHHHHHHH---TCSEE-ECTTTSCHHHHHHHHTTT
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHH------HHHHHHHc---CCCEE-EcCCCCCHHHHHHHHhCC
Confidence 56789999998 9999999999999999 8998886332 11111111 22222 243333 334455555
Q ss_pred CCccEEEEcccc
Q 012176 192 VPFTHVLHLAAQ 203 (469)
Q Consensus 192 ~~~d~Vih~Aa~ 203 (469)
.++|+||++.|.
T Consensus 281 ~g~D~vid~~g~ 292 (404)
T 3ip1_A 281 LGAKLFLEATGV 292 (404)
T ss_dssp CCCSEEEECSSC
T ss_pred CCCCEEEECCCC
Confidence 567999999986
|
| >4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A* | Back alignment and structure |
|---|
Probab=95.86 E-value=0.019 Score=56.88 Aligned_cols=76 Identities=16% Similarity=0.122 Sum_probs=48.7
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCC-cEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhc----
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGD-GVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFD---- 190 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~---- 190 (469)
..+.+|||+|+ |.+|...++.+...|. +|+++++..+ . ......+ +...+ .|..+.+..+.+.+
T Consensus 181 ~~g~~VlV~Ga-G~vG~~aiqlak~~Ga~~Vi~~~~~~~-----~-~~~a~~l---Ga~~v-i~~~~~~~~~~i~~~~~~ 249 (370)
T 4ej6_A 181 KAGSTVAILGG-GVIGLLTVQLARLAGATTVILSTRQAT-----K-RRLAEEV---GATAT-VDPSAGDVVEAIAGPVGL 249 (370)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCHH-----H-HHHHHHH---TCSEE-ECTTSSCHHHHHHSTTSS
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHH-----H-HHHHHHc---CCCEE-ECCCCcCHHHHHHhhhhc
Confidence 46789999998 9999999999999999 7888876321 1 1111111 22222 24444433333322
Q ss_pred --cCCccEEEEcccc
Q 012176 191 --VVPFTHVLHLAAQ 203 (469)
Q Consensus 191 --~~~~d~Vih~Aa~ 203 (469)
+ ++|+||+++|.
T Consensus 250 ~~g-g~Dvvid~~G~ 263 (370)
T 4ej6_A 250 VPG-GVDVVIECAGV 263 (370)
T ss_dssp STT-CEEEEEECSCC
T ss_pred cCC-CCCEEEECCCC
Confidence 3 67999999874
|
| >2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=95.84 E-value=0.0091 Score=57.31 Aligned_cols=34 Identities=29% Similarity=0.573 Sum_probs=30.5
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCC
Q 012176 118 GMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFN 152 (469)
Q Consensus 118 ~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~ 152 (469)
+|+|.|+|+ |.+|..++..|.+.|++|++++|+.
T Consensus 3 ~m~i~iiG~-G~~G~~~a~~l~~~g~~V~~~~r~~ 36 (316)
T 2ew2_A 3 AMKIAIAGA-GAMGSRLGIMLHQGGNDVTLIDQWP 36 (316)
T ss_dssp -CEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred CCeEEEECc-CHHHHHHHHHHHhCCCcEEEEECCH
Confidence 478999996 9999999999999999999999843
|
| >1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=95.81 E-value=0.018 Score=57.18 Aligned_cols=77 Identities=17% Similarity=0.183 Sum_probs=49.9
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCC-CcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCC---CHH---HHHHh
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRG-DGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLN---DAP---LLTKL 188 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~---d~~---~l~~~ 188 (469)
..+.+|||+| +|.+|...++.+...| .+|++++++.+ .+ +....-+...+ .|.. +.+ .+.++
T Consensus 194 ~~g~~VlV~G-aG~vG~~aiqlak~~Ga~~Vi~~~~~~~----~~-----~~~~~lGa~~v-i~~~~~~~~~~~~~v~~~ 262 (380)
T 1vj0_A 194 FAGKTVVIQG-AGPLGLFGVVIARSLGAENVIVIAGSPN----RL-----KLAEEIGADLT-LNRRETSVEERRKAIMDI 262 (380)
T ss_dssp CBTCEEEEEC-CSHHHHHHHHHHHHTTBSEEEEEESCHH----HH-----HHHHHTTCSEE-EETTTSCHHHHHHHHHHH
T ss_pred CCCCEEEEEC-cCHHHHHHHHHHHHcCCceEEEEcCCHH----HH-----HHHHHcCCcEE-EeccccCcchHHHHHHHH
Confidence 4678999999 8999999999999999 69999997432 11 11111233222 2433 222 23333
Q ss_pred hccCCccEEEEcccc
Q 012176 189 FDVVPFTHVLHLAAQ 203 (469)
Q Consensus 189 ~~~~~~d~Vih~Aa~ 203 (469)
..+.++|+||+++|.
T Consensus 263 ~~g~g~Dvvid~~g~ 277 (380)
T 1vj0_A 263 THGRGADFILEATGD 277 (380)
T ss_dssp TTTSCEEEEEECSSC
T ss_pred hCCCCCcEEEECCCC
Confidence 344467999999985
|
| >3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=95.79 E-value=0.059 Score=53.37 Aligned_cols=76 Identities=18% Similarity=0.207 Sum_probs=51.2
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCC-cEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCC----C-HHHHHHhh
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGD-GVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLN----D-APLLTKLF 189 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~----d-~~~l~~~~ 189 (469)
..+.+|||+|+ |.||...++.+...|. +|++++++.+ .+. .. ..-+...+ .|.. + .+.+.++.
T Consensus 192 ~~g~~VlV~Ga-G~vG~~a~q~a~~~Ga~~Vi~~~~~~~----~~~--~a---~~lGa~~v-i~~~~~~~~~~~~i~~~~ 260 (378)
T 3uko_A 192 EPGSNVAIFGL-GTVGLAVAEGAKTAGASRIIGIDIDSK----KYE--TA---KKFGVNEF-VNPKDHDKPIQEVIVDLT 260 (378)
T ss_dssp CTTCCEEEECC-SHHHHHHHHHHHHHTCSCEEEECSCTT----HHH--HH---HTTTCCEE-ECGGGCSSCHHHHHHHHT
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCHH----HHH--HH---HHcCCcEE-EccccCchhHHHHHHHhc
Confidence 46789999998 9999999999999998 8999987554 111 11 12233222 2332 1 23455555
Q ss_pred ccCCccEEEEcccc
Q 012176 190 DVVPFTHVLHLAAQ 203 (469)
Q Consensus 190 ~~~~~d~Vih~Aa~ 203 (469)
.+ ++|+||+++|.
T Consensus 261 ~g-g~D~vid~~g~ 273 (378)
T 3uko_A 261 DG-GVDYSFECIGN 273 (378)
T ss_dssp TS-CBSEEEECSCC
T ss_pred CC-CCCEEEECCCC
Confidence 55 78999999985
|
| >3dr3_A N-acetyl-gamma-glutamyl-phosphate reductase; csgid target, ARGC, essential gene, amino-acid biosynthesis, arginine biosynthesis, cytoplasm; HET: MLT; 2.00A {Shigella flexneri} PDB: 2g17_A | Back alignment and structure |
|---|
Probab=95.78 E-value=0.026 Score=55.05 Aligned_cols=101 Identities=13% Similarity=0.082 Sum_probs=58.8
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHC-CCcEEEEeCCCC--CCChhHHHHHHHhhcc-CCeEEEEecCCCHHHHHHhhccCC
Q 012176 118 GMTVLVTGAAGFVGSHCSLALKKR-GDGVLGLDNFNS--YYDPSLKRARQKLLQK-HQVFIVEGDLNDAPLLTKLFDVVP 193 (469)
Q Consensus 118 ~~~VlVtGatG~IG~~l~~~L~~~-G~~V~~~~r~~~--~~~~~~~~~~~~~~~~-~~v~~v~~Dl~d~~~l~~~~~~~~ 193 (469)
+++|.|+||||++|..|++.|.++ ..++..+..... ..-+...... +.+.. ..+.+... .|.+ ++++++
T Consensus 4 M~kv~IvGatG~vG~~l~~~L~~~p~~el~~l~s~~~~~saGk~~~~~~-p~~~~~~~~~v~~~--~~~~---~~~~~~- 76 (337)
T 3dr3_A 4 MLNTLIVGASGYAGAELVTYVNRHPHMNITALTVSAQSNDAGKLISDLH-PQLKGIVELPLQPM--SDIS---EFSPGV- 76 (337)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHCTTEEEEEEEEETTCTTTTSBHHHHC-GGGTTTCCCBEEEE--SSGG---GTCTTC-
T ss_pred ceEEEEECCCChHHHHHHHHHHhCCCCcEEEEEecCchhhcCCchHHhC-ccccCccceeEecc--CCHH---HHhcCC-
Confidence 368999999999999999999985 457777754331 1111122111 11111 12223222 0222 233556
Q ss_pred ccEEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcCc
Q 012176 194 FTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSS 246 (469)
Q Consensus 194 ~d~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS~ 246 (469)
|+||-+.+.. ....++..+.+.|. ++|=.|+.
T Consensus 77 -Dvvf~a~p~~------------------~s~~~~~~~~~~g~--~vIDlSa~ 108 (337)
T 3dr3_A 77 -DVVFLATAHE------------------VSHDLAPQFLEAGC--VVFDLSGA 108 (337)
T ss_dssp -SEEEECSCHH------------------HHHHHHHHHHHTTC--EEEECSST
T ss_pred -CEEEECCChH------------------HHHHHHHHHHHCCC--EEEEcCCc
Confidence 9999887641 13455556667776 68888875
|
| >3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A | Back alignment and structure |
|---|
Probab=95.77 E-value=0.036 Score=55.03 Aligned_cols=70 Identities=19% Similarity=0.174 Sum_probs=54.1
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCcc
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFT 195 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~d 195 (469)
..+++|+|+|+ |.+|+.+++++.+.|++|++++........ . . --..+.+|..|.+.+.++++.+ |
T Consensus 10 ~~~~~IlIlG~-G~lg~~la~aa~~lG~~viv~d~~~~~p~~-------~-~---ad~~~~~~~~d~~~l~~~~~~~--d 75 (377)
T 3orq_A 10 KFGATIGIIGG-GQLGKMMAQSAQKMGYKVVVLDPSEDCPCR-------Y-V---AHEFIQAKYDDEKALNQLGQKC--D 75 (377)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCTTCTTG-------G-G---SSEEEECCTTCHHHHHHHHHHC--S
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEECCCCChhh-------h-h---CCEEEECCCCCHHHHHHHHHhC--C
Confidence 46789999996 999999999999999999999875431111 0 0 1245678999999999999876 8
Q ss_pred EEEE
Q 012176 196 HVLH 199 (469)
Q Consensus 196 ~Vih 199 (469)
+|+-
T Consensus 76 vi~~ 79 (377)
T 3orq_A 76 VITY 79 (377)
T ss_dssp EEEE
T ss_pred ccee
Confidence 8754
|
| >1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A* | Back alignment and structure |
|---|
Probab=95.72 E-value=0.029 Score=55.03 Aligned_cols=111 Identities=16% Similarity=0.127 Sum_probs=68.4
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCC-cEEEEeCCCC--------------CCChhHHHHHHHhhc--cC--CeEEEE
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGD-GVLGLDNFNS--------------YYDPSLKRARQKLLQ--KH--QVFIVE 176 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~-~V~~~~r~~~--------------~~~~~~~~~~~~~~~--~~--~v~~v~ 176 (469)
....+|+|.|+ |.+|.++++.|...|. +++++|...- ..-..+.......+. .+ .+..+.
T Consensus 34 L~~~~VlivG~-GGlG~~ia~~La~~Gvg~itlvD~d~V~~sNL~rq~~~~~~diG~~Ka~~~~~~l~~lnp~v~v~~~~ 112 (346)
T 1y8q_A 34 LRASRVLLVGL-KGLGAEIAKNLILAGVKGLTMLDHEQVTPEDPGAQFLIRTGSVGRNRAEASLERAQNLNPMVDVKVDT 112 (346)
T ss_dssp HHTCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECCCBCCSSCGGGCTTSCSSCTTSBHHHHHHHHHHHTCTTSEEEEEC
T ss_pred HhCCeEEEECC-CHHHHHHHHHHHHcCCCEEEEEECCCcchhhCCCCCccccccCcCCHHHHHHHHHHhHCCCeEEEEEe
Confidence 34578999996 8999999999999997 6777753220 000112222222222 12 345555
Q ss_pred ecCCCHHHHHHhhccCCccEEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcCccccC
Q 012176 177 GDLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYG 250 (469)
Q Consensus 177 ~Dl~d~~~l~~~~~~~~~d~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS~~vyg 250 (469)
.++.+ ...++++++ |+||.+.. |...-..+-++|.+.++ .+|..++.+.+|
T Consensus 113 ~~~~~--~~~~~~~~~--dvVv~~~d-----------------~~~~r~~ln~~~~~~~i--p~i~~~~~G~~G 163 (346)
T 1y8q_A 113 EDIEK--KPESFFTQF--DAVCLTCC-----------------SRDVIVKVDQICHKNSI--KFFTGDVFGYHG 163 (346)
T ss_dssp SCGGG--CCHHHHTTC--SEEEEESC-----------------CHHHHHHHHHHHHHTTC--EEEEEEEEBTEE
T ss_pred cccCc--chHHHhcCC--CEEEEcCC-----------------CHHHHHHHHHHHHHcCC--CEEEEeecccEE
Confidence 55533 235566666 99998753 23334556778888875 588877766665
|
| >3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=95.71 E-value=0.023 Score=55.01 Aligned_cols=75 Identities=23% Similarity=0.211 Sum_probs=51.6
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCcc
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFT 195 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~d 195 (469)
..+.+|+|+||+|.+|...++.+...|.+|+++++.. +......+ +... ..|..+.+.+.+.+.++ |
T Consensus 151 ~~g~~vlV~Ga~G~vG~~a~q~a~~~Ga~vi~~~~~~-------~~~~~~~l---Ga~~-~i~~~~~~~~~~~~~g~--D 217 (321)
T 3tqh_A 151 KQGDVVLIHAGAGGVGHLAIQLAKQKGTTVITTASKR-------NHAFLKAL---GAEQ-CINYHEEDFLLAISTPV--D 217 (321)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEECHH-------HHHHHHHH---TCSE-EEETTTSCHHHHCCSCE--E
T ss_pred CCCCEEEEEcCCcHHHHHHHHHHHHcCCEEEEEeccc-------hHHHHHHc---CCCE-EEeCCCcchhhhhccCC--C
Confidence 5678999999999999999999999999999887511 11111111 3222 23555544355555555 9
Q ss_pred EEEEcccc
Q 012176 196 HVLHLAAQ 203 (469)
Q Consensus 196 ~Vih~Aa~ 203 (469)
+||++.|.
T Consensus 218 ~v~d~~g~ 225 (321)
T 3tqh_A 218 AVIDLVGG 225 (321)
T ss_dssp EEEESSCH
T ss_pred EEEECCCc
Confidence 99999974
|
| >3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=95.70 E-value=0.028 Score=53.76 Aligned_cols=71 Identities=14% Similarity=0.068 Sum_probs=50.9
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCc
Q 012176 115 RPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPF 194 (469)
Q Consensus 115 ~~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~ 194 (469)
...+++|+|.|+ |.||+.+++.|...|.+|++.+|... +.. . ....++..+. .++++++++++
T Consensus 152 ~l~g~~v~IiG~-G~iG~~~a~~l~~~G~~V~~~dr~~~-------~~~-~-~~~~g~~~~~-----~~~l~~~l~~a-- 214 (293)
T 3d4o_A 152 TIHGANVAVLGL-GRVGMSVARKFAALGAKVKVGARESD-------LLA-R-IAEMGMEPFH-----ISKAAQELRDV-- 214 (293)
T ss_dssp CSTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSHH-------HHH-H-HHHTTSEEEE-----GGGHHHHTTTC--
T ss_pred CCCCCEEEEEee-CHHHHHHHHHHHhCCCEEEEEECCHH-------HHH-H-HHHCCCeecC-----hhhHHHHhcCC--
Confidence 367899999995 99999999999999999999998431 111 1 1112444331 34577778877
Q ss_pred cEEEEccc
Q 012176 195 THVLHLAA 202 (469)
Q Consensus 195 d~Vih~Aa 202 (469)
|+|+.+..
T Consensus 215 DvVi~~~p 222 (293)
T 3d4o_A 215 DVCINTIP 222 (293)
T ss_dssp SEEEECCS
T ss_pred CEEEECCC
Confidence 99999874
|
| >2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ... | Back alignment and structure |
|---|
Probab=95.68 E-value=0.055 Score=53.49 Aligned_cols=76 Identities=20% Similarity=0.266 Sum_probs=49.0
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCC-cEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCC-----HHHHHHhh
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGD-GVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLND-----APLLTKLF 189 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d-----~~~l~~~~ 189 (469)
..+.+|||+|+ |.||...++.+...|. +|++++++.+ .+...+ . -+...+ .|..+ .+.+.++.
T Consensus 190 ~~g~~VlV~Ga-G~vG~~a~qla~~~Ga~~Vi~~~~~~~----~~~~~~-~----lGa~~v-i~~~~~~~~~~~~~~~~~ 258 (374)
T 2jhf_A 190 TQGSTCAVFGL-GGVGLSVIMGCKAAGAARIIGVDINKD----KFAKAK-E----VGATEC-VNPQDYKKPIQEVLTEMS 258 (374)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGG----GHHHHH-H----TTCSEE-ECGGGCSSCHHHHHHHHT
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCHH----HHHHHH-H----hCCceE-ecccccchhHHHHHHHHh
Confidence 46789999995 9999999999999998 7999987443 111111 1 132211 23332 12334443
Q ss_pred ccCCccEEEEcccc
Q 012176 190 DVVPFTHVLHLAAQ 203 (469)
Q Consensus 190 ~~~~~d~Vih~Aa~ 203 (469)
.+ ++|+||+++|.
T Consensus 259 ~~-g~D~vid~~g~ 271 (374)
T 2jhf_A 259 NG-GVDFSFEVIGR 271 (374)
T ss_dssp TS-CBSEEEECSCC
T ss_pred CC-CCcEEEECCCC
Confidence 34 67999999975
|
| >1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A* | Back alignment and structure |
|---|
Probab=95.67 E-value=0.056 Score=53.42 Aligned_cols=76 Identities=20% Similarity=0.198 Sum_probs=49.1
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCC-cEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCC-----HHHHHHhh
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGD-GVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLND-----APLLTKLF 189 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d-----~~~l~~~~ 189 (469)
..+.+|||+|+ |.||...++.+...|. +|++++++.+ .+... .. -+...+ .|..+ .+.+.++.
T Consensus 194 ~~g~~VlV~Ga-G~vG~~aiqlak~~Ga~~Vi~~~~~~~----~~~~a-~~----lGa~~v-i~~~~~~~~~~~~v~~~~ 262 (376)
T 1e3i_A 194 TPGSTCAVFGL-GCVGLSAIIGCKIAGASRIIAIDINGE----KFPKA-KA----LGATDC-LNPRELDKPVQDVITELT 262 (376)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGG----GHHHH-HH----TTCSEE-ECGGGCSSCHHHHHHHHH
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCHH----HHHHH-HH----hCCcEE-EccccccchHHHHHHHHh
Confidence 46789999996 9999999999999998 7999987443 11111 11 132221 23332 12344444
Q ss_pred ccCCccEEEEcccc
Q 012176 190 DVVPFTHVLHLAAQ 203 (469)
Q Consensus 190 ~~~~~d~Vih~Aa~ 203 (469)
.+ ++|+||++.|.
T Consensus 263 ~~-g~Dvvid~~G~ 275 (376)
T 1e3i_A 263 AG-GVDYSLDCAGT 275 (376)
T ss_dssp TS-CBSEEEESSCC
T ss_pred CC-CccEEEECCCC
Confidence 44 67999999974
|
| >3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* | Back alignment and structure |
|---|
Probab=95.66 E-value=0.028 Score=54.79 Aligned_cols=76 Identities=18% Similarity=0.120 Sum_probs=48.7
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhc--cCC
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFD--VVP 193 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~--~~~ 193 (469)
..+.+|||+|+ |.+|...++.+...|.+|++++++.+ +.+....-+...+ .|..+.+..+.+.+ + +
T Consensus 165 ~~g~~VlV~Ga-G~vG~~a~qla~~~Ga~Vi~~~~~~~---------~~~~~~~lGa~~~-i~~~~~~~~~~~~~~~g-~ 232 (340)
T 3s2e_A 165 RPGQWVVISGI-GGLGHVAVQYARAMGLRVAAVDIDDA---------KLNLARRLGAEVA-VNARDTDPAAWLQKEIG-G 232 (340)
T ss_dssp CTTSEEEEECC-STTHHHHHHHHHHTTCEEEEEESCHH---------HHHHHHHTTCSEE-EETTTSCHHHHHHHHHS-S
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHCCCeEEEEeCCHH---------HHHHHHHcCCCEE-EeCCCcCHHHHHHHhCC-C
Confidence 56789999997 88999999999999999999987432 1111111232222 24444333332222 2 5
Q ss_pred ccEEEEcccc
Q 012176 194 FTHVLHLAAQ 203 (469)
Q Consensus 194 ~d~Vih~Aa~ 203 (469)
+|+||++++.
T Consensus 233 ~d~vid~~g~ 242 (340)
T 3s2e_A 233 AHGVLVTAVS 242 (340)
T ss_dssp EEEEEESSCC
T ss_pred CCEEEEeCCC
Confidence 6999999864
|
| >1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A | Back alignment and structure |
|---|
Probab=95.65 E-value=0.065 Score=52.67 Aligned_cols=37 Identities=16% Similarity=0.023 Sum_probs=32.6
Q ss_pred CCC-CEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCC
Q 012176 116 PNG-MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFN 152 (469)
Q Consensus 116 ~~~-~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~ 152 (469)
..+ .+|||+||+|.+|...++.+...|.+|+++++..
T Consensus 165 ~~g~~~VlV~Ga~G~vG~~aiqlak~~Ga~vi~~~~~~ 202 (364)
T 1gu7_A 165 TPGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDR 202 (364)
T ss_dssp CTTTCEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCC
T ss_pred CCCCcEEEECCCCcHHHHHHHHHHHHCCCEEEEEecCc
Confidence 456 8999999999999999999988999999988644
|
| >3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=95.65 E-value=0.014 Score=56.38 Aligned_cols=69 Identities=17% Similarity=0.150 Sum_probs=48.3
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCc
Q 012176 115 RPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPF 194 (469)
Q Consensus 115 ~~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~ 194 (469)
..++|+|.|+|. |.+|..+++.|++.|++|++.+|+.+.. .... ..++.. ..+++++++++
T Consensus 18 ~~~m~~I~iIG~-G~mG~~~A~~l~~~G~~V~~~dr~~~~~----~~l~-----~~g~~~-------~~~~~~~~~~a-- 78 (310)
T 3doj_A 18 GSHMMEVGFLGL-GIMGKAMSMNLLKNGFKVTVWNRTLSKC----DELV-----EHGASV-------CESPAEVIKKC-- 78 (310)
T ss_dssp CCCSCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSGGGG----HHHH-----HTTCEE-------CSSHHHHHHHC--
T ss_pred cccCCEEEEECc-cHHHHHHHHHHHHCCCeEEEEeCCHHHH----HHHH-----HCCCeE-------cCCHHHHHHhC--
Confidence 356689999985 9999999999999999999999965421 1111 113322 12355666777
Q ss_pred cEEEEccc
Q 012176 195 THVLHLAA 202 (469)
Q Consensus 195 d~Vih~Aa 202 (469)
|+||-+..
T Consensus 79 Dvvi~~vp 86 (310)
T 3doj_A 79 KYTIAMLS 86 (310)
T ss_dssp SEEEECCS
T ss_pred CEEEEEcC
Confidence 99998763
|
| >1ys4_A Aspartate-semialdehyde dehydrogenase; oxidoreductase, asadh; HET: NAP; 2.29A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=95.64 E-value=0.019 Score=56.53 Aligned_cols=32 Identities=28% Similarity=0.267 Sum_probs=27.7
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCC-CcEEEEeC
Q 012176 119 MTVLVTGAAGFVGSHCSLALKKRG-DGVLGLDN 150 (469)
Q Consensus 119 ~~VlVtGatG~IG~~l~~~L~~~G-~~V~~~~r 150 (469)
++|.|.||+|++|+.+++.|.+++ .+|+.+.+
T Consensus 9 ~kV~IiGAtG~iG~~llr~L~~~p~~ev~~i~~ 41 (354)
T 1ys4_A 9 IKVGVLGATGSVGQRFVQLLADHPMFELTALAA 41 (354)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTCSSEEEEEEEE
T ss_pred ceEEEECcCCHHHHHHHHHHhcCCCCEEEEEEc
Confidence 689999999999999999998874 47877764
|
| >2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=95.62 E-value=0.03 Score=53.71 Aligned_cols=72 Identities=13% Similarity=0.086 Sum_probs=51.8
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCc
Q 012176 115 RPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPF 194 (469)
Q Consensus 115 ~~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~ 194 (469)
...+++|+|.|+ |.||+.+++.|...|.+|++.+|... +.. .....++..+. .++++++++++
T Consensus 154 ~l~g~~v~IiG~-G~iG~~~a~~l~~~G~~V~~~d~~~~-------~~~--~~~~~g~~~~~-----~~~l~~~l~~a-- 216 (300)
T 2rir_A 154 TIHGSQVAVLGL-GRTGMTIARTFAALGANVKVGARSSA-------HLA--RITEMGLVPFH-----TDELKEHVKDI-- 216 (300)
T ss_dssp CSTTSEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSHH-------HHH--HHHHTTCEEEE-----GGGHHHHSTTC--
T ss_pred CCCCCEEEEEcc-cHHHHHHHHHHHHCCCEEEEEECCHH-------HHH--HHHHCCCeEEc-----hhhHHHHhhCC--
Confidence 467899999996 99999999999999999999998431 111 01112444332 34577788877
Q ss_pred cEEEEcccc
Q 012176 195 THVLHLAAQ 203 (469)
Q Consensus 195 d~Vih~Aa~ 203 (469)
|+|+.+...
T Consensus 217 DvVi~~~p~ 225 (300)
T 2rir_A 217 DICINTIPS 225 (300)
T ss_dssp SEEEECCSS
T ss_pred CEEEECCCh
Confidence 999998764
|
| >3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A* | Back alignment and structure |
|---|
Probab=95.60 E-value=0.0074 Score=57.32 Aligned_cols=70 Identities=11% Similarity=0.073 Sum_probs=49.6
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCC-cEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCc
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGD-GVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPF 194 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~ 194 (469)
..+++|+|+|+ |.+|+.++..|.+.|. +|++++|..+.... +.. .+..+ ..+++.+++.++
T Consensus 115 l~~k~vlvlGa-Gg~g~aia~~L~~~G~~~v~v~~R~~~~a~~---------la~-~~~~~-----~~~~~~~~~~~a-- 176 (277)
T 3don_A 115 IEDAYILILGA-GGASKGIANELYKIVRPTLTVANRTMSRFNN---------WSL-NINKI-----NLSHAESHLDEF-- 176 (277)
T ss_dssp GGGCCEEEECC-SHHHHHHHHHHHTTCCSCCEEECSCGGGGTT---------CCS-CCEEE-----CHHHHHHTGGGC--
T ss_pred cCCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEeCCHHHHHH---------HHH-hcccc-----cHhhHHHHhcCC--
Confidence 46789999997 8999999999999998 89999996532111 111 22221 245567777777
Q ss_pred cEEEEcccc
Q 012176 195 THVLHLAAQ 203 (469)
Q Consensus 195 d~Vih~Aa~ 203 (469)
|+||++-..
T Consensus 177 DiVInaTp~ 185 (277)
T 3don_A 177 DIIINTTPA 185 (277)
T ss_dssp SEEEECCC-
T ss_pred CEEEECccC
Confidence 999998643
|
| >1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A | Back alignment and structure |
|---|
Probab=95.59 E-value=0.039 Score=54.19 Aligned_cols=37 Identities=14% Similarity=0.061 Sum_probs=32.3
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCC
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFN 152 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~ 152 (469)
..+.+|||+||+|.+|...++.+...|.+|+++.+..
T Consensus 166 ~~g~~VlV~Ga~G~vG~~aiqlak~~Ga~vi~~~~~~ 202 (357)
T 1zsy_A 166 QPGDSVIQNASNSGVGQAVIQIAAALGLRTINVVRDR 202 (357)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEECCC
T ss_pred CCCCEEEEeCCcCHHHHHHHHHHHHcCCEEEEEecCc
Confidence 4678999999999999999999888899998887643
|
| >1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A* | Back alignment and structure |
|---|
Probab=95.54 E-value=0.048 Score=52.25 Aligned_cols=36 Identities=22% Similarity=0.280 Sum_probs=32.1
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCC
Q 012176 117 NGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNS 153 (469)
Q Consensus 117 ~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~ 153 (469)
..++|.|+|+ |.+|..++..|++.|++|++.+|+.+
T Consensus 14 ~~~~I~VIG~-G~mG~~iA~~la~~G~~V~~~d~~~~ 49 (302)
T 1f0y_A 14 IVKHVTVIGG-GLMGAGIAQVAAATGHTVVLVDQTED 49 (302)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred cCCEEEEECC-CHHHHHHHHHHHhCCCeEEEEECCHH
Confidence 3468999997 99999999999999999999998543
|
| >1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A* | Back alignment and structure |
|---|
Probab=95.52 E-value=0.06 Score=53.18 Aligned_cols=76 Identities=17% Similarity=0.183 Sum_probs=48.8
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCC-cEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCC-----HHHHHHhh
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGD-GVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLND-----APLLTKLF 189 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d-----~~~l~~~~ 189 (469)
..+.+|||+|+ |.||...++.+...|. +|++++++.+ .+...+ . -+...+ .|..+ .+.+.++.
T Consensus 190 ~~g~~VlV~Ga-G~vG~~aiqlak~~Ga~~Vi~~~~~~~----~~~~a~-~----lGa~~v-i~~~~~~~~~~~~i~~~t 258 (373)
T 1p0f_A 190 TPGSTCAVFGL-GGVGFSAIVGCKAAGASRIIGVGTHKD----KFPKAI-E----LGATEC-LNPKDYDKPIYEVICEKT 258 (373)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECSCGG----GHHHHH-H----TTCSEE-ECGGGCSSCHHHHHHHHT
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEECCCHH----HHHHHH-H----cCCcEE-EecccccchHHHHHHHHh
Confidence 46789999996 9999999999888898 7999887443 111111 1 132221 23322 12344444
Q ss_pred ccCCccEEEEcccc
Q 012176 190 DVVPFTHVLHLAAQ 203 (469)
Q Consensus 190 ~~~~~d~Vih~Aa~ 203 (469)
.+ ++|+||+++|.
T Consensus 259 ~g-g~Dvvid~~g~ 271 (373)
T 1p0f_A 259 NG-GVDYAVECAGR 271 (373)
T ss_dssp TS-CBSEEEECSCC
T ss_pred CC-CCCEEEECCCC
Confidence 44 67999999974
|
| >1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A | Back alignment and structure |
|---|
Probab=95.51 E-value=0.077 Score=52.03 Aligned_cols=35 Identities=37% Similarity=0.355 Sum_probs=30.9
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCC-cEEEEeCC
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGD-GVLGLDNF 151 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~-~V~~~~r~ 151 (469)
..+.+|||+|+ |.+|...++.+...|. +|++++++
T Consensus 170 ~~g~~VlV~Ga-G~vG~~aiqlak~~Ga~~Vi~~~~~ 205 (356)
T 1pl8_A 170 TLGHKVLVCGA-GPIGMVTLLVAKAMGAAQVVVTDLS 205 (356)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEESC
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCC
Confidence 46789999996 9999999999998999 89999873
|
| >3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=95.51 E-value=0.016 Score=56.80 Aligned_cols=70 Identities=17% Similarity=0.092 Sum_probs=48.5
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCcc
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFT 195 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~d 195 (469)
..+.+|||+|+ |.||...++.+...|.+|++++++.+. ....+ .+ +...+. .+.+.+.+ ++|
T Consensus 175 ~~g~~VlV~Ga-G~vG~~a~qla~~~Ga~Vi~~~~~~~~----~~~~~--~l---Ga~~v~---~~~~~~~~-----~~D 236 (348)
T 3two_A 175 TKGTKVGVAGF-GGLGSMAVKYAVAMGAEVSVFARNEHK----KQDAL--SM---GVKHFY---TDPKQCKE-----ELD 236 (348)
T ss_dssp CTTCEEEEESC-SHHHHHHHHHHHHTTCEEEEECSSSTT----HHHHH--HT---TCSEEE---SSGGGCCS-----CEE
T ss_pred CCCCEEEEECC-cHHHHHHHHHHHHCCCeEEEEeCCHHH----HHHHH--hc---CCCeec---CCHHHHhc-----CCC
Confidence 56789999997 999999999999999999999886541 22111 11 222222 34443332 569
Q ss_pred EEEEcccc
Q 012176 196 HVLHLAAQ 203 (469)
Q Consensus 196 ~Vih~Aa~ 203 (469)
+||++.|.
T Consensus 237 ~vid~~g~ 244 (348)
T 3two_A 237 FIISTIPT 244 (348)
T ss_dssp EEEECCCS
T ss_pred EEEECCCc
Confidence 99999986
|
| >3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium} | Back alignment and structure |
|---|
Probab=95.49 E-value=0.02 Score=52.44 Aligned_cols=71 Identities=15% Similarity=0.159 Sum_probs=51.1
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCcc
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFT 195 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~d 195 (469)
.++++|||+|| |-+|...++.|++.|++|++++.... +. .....+..++.++..+..+. -++++ |
T Consensus 29 L~gk~VLVVGg-G~va~~ka~~Ll~~GA~VtVvap~~~---~~----l~~l~~~~~i~~i~~~~~~~-----dL~~a--d 93 (223)
T 3dfz_A 29 LKGRSVLVVGG-GTIATRRIKGFLQEGAAITVVAPTVS---AE----INEWEAKGQLRVKRKKVGEE-----DLLNV--F 93 (223)
T ss_dssp CTTCCEEEECC-SHHHHHHHHHHGGGCCCEEEECSSCC---HH----HHHHHHTTSCEEECSCCCGG-----GSSSC--S
T ss_pred cCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEECCCCC---HH----HHHHHHcCCcEEEECCCCHh-----HhCCC--C
Confidence 67899999997 99999999999999999999986322 22 22333345788877665432 34555 9
Q ss_pred EEEEcc
Q 012176 196 HVLHLA 201 (469)
Q Consensus 196 ~Vih~A 201 (469)
.||-+-
T Consensus 94 LVIaAT 99 (223)
T 3dfz_A 94 FIVVAT 99 (223)
T ss_dssp EEEECC
T ss_pred EEEECC
Confidence 888543
|
| >3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=95.47 E-value=0.042 Score=52.85 Aligned_cols=68 Identities=13% Similarity=0.118 Sum_probs=46.7
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCcc
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFT 195 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~d 195 (469)
...|+|.|+| .|.+|..+++.|++.|++|++.+|+.+ ...+.. + .++.. ..+++++++++ |
T Consensus 7 ~~~~~IgiIG-~G~mG~~~A~~l~~~G~~V~~~dr~~~----~~~~~~----~-~g~~~-------~~~~~e~~~~a--D 67 (306)
T 3l6d_A 7 SFEFDVSVIG-LGAMGTIMAQVLLKQGKRVAIWNRSPG----KAAALV----A-AGAHL-------CESVKAALSAS--P 67 (306)
T ss_dssp CCSCSEEEEC-CSHHHHHHHHHHHHTTCCEEEECSSHH----HHHHHH----H-HTCEE-------CSSHHHHHHHS--S
T ss_pred cCCCeEEEEC-CCHHHHHHHHHHHHCCCEEEEEeCCHH----HHHHHH----H-CCCee-------cCCHHHHHhcC--C
Confidence 3457899998 599999999999999999999998432 111111 1 13321 12355667777 9
Q ss_pred EEEEccc
Q 012176 196 HVLHLAA 202 (469)
Q Consensus 196 ~Vih~Aa 202 (469)
+||-+..
T Consensus 68 vVi~~vp 74 (306)
T 3l6d_A 68 ATIFVLL 74 (306)
T ss_dssp EEEECCS
T ss_pred EEEEEeC
Confidence 9998764
|
| >1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=95.45 E-value=0.021 Score=56.59 Aligned_cols=75 Identities=20% Similarity=0.192 Sum_probs=51.9
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCcc
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFT 195 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~d 195 (469)
..+.+|||+|+ |.||...++.+...|.+|++++++.+ .+...+ . + +...+ .|..+.+.++++.. ++|
T Consensus 193 ~~g~~VlV~Ga-G~vG~~aiqlak~~Ga~Vi~~~~~~~----~~~~a~-~-l---Ga~~v-i~~~~~~~~~~~~~--g~D 259 (369)
T 1uuf_A 193 GPGKKVGVVGI-GGLGHMGIKLAHAMGAHVVAFTTSEA----KREAAK-A-L---GADEV-VNSRNADEMAAHLK--SFD 259 (369)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSGG----GHHHHH-H-H---TCSEE-EETTCHHHHHTTTT--CEE
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCHH----HHHHHH-H-c---CCcEE-eccccHHHHHHhhc--CCC
Confidence 46789999998 88999999999999999999997543 222221 1 1 22211 35666665555543 469
Q ss_pred EEEEcccc
Q 012176 196 HVLHLAAQ 203 (469)
Q Consensus 196 ~Vih~Aa~ 203 (469)
+||+++|.
T Consensus 260 vvid~~g~ 267 (369)
T 1uuf_A 260 FILNTVAA 267 (369)
T ss_dssp EEEECCSS
T ss_pred EEEECCCC
Confidence 99999985
|
| >1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A | Back alignment and structure |
|---|
Probab=95.44 E-value=0.012 Score=58.01 Aligned_cols=75 Identities=21% Similarity=0.158 Sum_probs=50.0
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCH-HHHHHhhccCCc
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDA-PLLTKLFDVVPF 194 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~-~~l~~~~~~~~~ 194 (469)
..+.+|||+|+ |.+|...++.+...|.+|++++++.+. +...+ . + +...+ .|..+. +..+++.. ++
T Consensus 178 ~~g~~VlV~Ga-G~vG~~~~qlak~~Ga~Vi~~~~~~~~----~~~~~-~-l---Ga~~v-~~~~~~~~~~~~~~~--~~ 244 (360)
T 1piw_A 178 GPGKKVGIVGL-GGIGSMGTLISKAMGAETYVISRSSRK----REDAM-K-M---GADHY-IATLEEGDWGEKYFD--TF 244 (360)
T ss_dssp STTCEEEEECC-SHHHHHHHHHHHHHTCEEEEEESSSTT----HHHHH-H-H---TCSEE-EEGGGTSCHHHHSCS--CE
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEcCCHHH----HHHHH-H-c---CCCEE-EcCcCchHHHHHhhc--CC
Confidence 46789999999 999999999998899999999986542 22221 1 1 22211 244333 33333332 56
Q ss_pred cEEEEcccc
Q 012176 195 THVLHLAAQ 203 (469)
Q Consensus 195 d~Vih~Aa~ 203 (469)
|+||+++|.
T Consensus 245 D~vid~~g~ 253 (360)
T 1piw_A 245 DLIVVCASS 253 (360)
T ss_dssp EEEEECCSC
T ss_pred CEEEECCCC
Confidence 999999985
|
| >4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A | Back alignment and structure |
|---|
Probab=95.44 E-value=0.033 Score=56.13 Aligned_cols=71 Identities=20% Similarity=0.184 Sum_probs=54.0
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCc
Q 012176 115 RPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPF 194 (469)
Q Consensus 115 ~~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~ 194 (469)
...+++|+|.|+ |.+|+.+++++.+.|++|++++.... .+ .... --+.+.+|..|.+.+.++++.+
T Consensus 32 ~~~~~~IlIlG~-G~lg~~~~~aa~~lG~~v~v~d~~~~--~p-----~~~~----ad~~~~~~~~d~~~l~~~a~~~-- 97 (419)
T 4e4t_A 32 ILPGAWLGMVGG-GQLGRMFCFAAQSMGYRVAVLDPDPA--SP-----AGAV----ADRHLRAAYDDEAALAELAGLC-- 97 (419)
T ss_dssp CCTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCTT--CH-----HHHH----SSEEECCCTTCHHHHHHHHHHC--
T ss_pred CCCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEECCCCc--Cc-----hhhh----CCEEEECCcCCHHHHHHHHhcC--
Confidence 457789999996 89999999999999999999986432 11 1111 1135568999999999999766
Q ss_pred cEEEE
Q 012176 195 THVLH 199 (469)
Q Consensus 195 d~Vih 199 (469)
|+|+.
T Consensus 98 D~V~~ 102 (419)
T 4e4t_A 98 EAVST 102 (419)
T ss_dssp SEEEE
T ss_pred CEEEE
Confidence 99884
|
| >2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A* | Back alignment and structure |
|---|
Probab=95.44 E-value=0.054 Score=53.50 Aligned_cols=76 Identities=20% Similarity=0.231 Sum_probs=48.8
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCC-cEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCC-----HHHHHHhh
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGD-GVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLND-----APLLTKLF 189 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d-----~~~l~~~~ 189 (469)
..+.+|||+|+ |.+|...++.+...|. +|++++++.+ .+...+ . + +...+ .|..+ .+.+.++.
T Consensus 189 ~~g~~VlV~Ga-G~vG~~avqla~~~Ga~~Vi~~~~~~~----~~~~~~-~-l---Ga~~v-i~~~~~~~~~~~~v~~~~ 257 (373)
T 2fzw_A 189 EPGSVCAVFGL-GGVGLAVIMGCKVAGASRIIGVDINKD----KFARAK-E-F---GATEC-INPQDFSKPIQEVLIEMT 257 (373)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECSCGG----GHHHHH-H-H---TCSEE-ECGGGCSSCHHHHHHHHT
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCHH----HHHHHH-H-c---CCceE-eccccccccHHHHHHHHh
Confidence 46789999996 9999999999988998 7999987443 112111 1 1 22211 23332 12344443
Q ss_pred ccCCccEEEEcccc
Q 012176 190 DVVPFTHVLHLAAQ 203 (469)
Q Consensus 190 ~~~~~d~Vih~Aa~ 203 (469)
.+ ++|+||+++|.
T Consensus 258 ~~-g~D~vid~~g~ 270 (373)
T 2fzw_A 258 DG-GVDYSFECIGN 270 (373)
T ss_dssp TS-CBSEEEECSCC
T ss_pred CC-CCCEEEECCCc
Confidence 44 67999999974
|
| >2o7s_A DHQ-SDH PR, bifunctional 3-dehydroquinate dehydratase/shikima dehydrogenase; shikimate, NADPH, dehydroshikimate, bifunctional enzyme; HET: DHK TLA NAP; 1.78A {Arabidopsis thaliana} PDB: 2o7q_A* 2gpt_A* | Back alignment and structure |
|---|
Probab=95.42 E-value=0.011 Score=61.63 Aligned_cols=35 Identities=29% Similarity=0.328 Sum_probs=28.5
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCC
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNF 151 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~ 151 (469)
..+++++|||| |.+|+.++..|++.|++|++++|.
T Consensus 362 l~~k~vlV~Ga-GGig~aia~~L~~~G~~V~i~~R~ 396 (523)
T 2o7s_A 362 LASKTVVVIGA-GGAGKALAYGAKEKGAKVVIANRT 396 (523)
T ss_dssp ----CEEEECC-SHHHHHHHHHHHHHCC-CEEEESS
T ss_pred cCCCEEEEECC-cHHHHHHHHHHHHCCCEEEEEECC
Confidence 46789999999 799999999999999999999984
|
| >3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri} | Back alignment and structure |
|---|
Probab=95.41 E-value=0.069 Score=50.90 Aligned_cols=67 Identities=13% Similarity=0.174 Sum_probs=45.0
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCccE
Q 012176 117 NGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTH 196 (469)
Q Consensus 117 ~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~d~ 196 (469)
..|+|.|.|+ |.+|..++..|.+.|++|++.+|+.+ + ...+...++.. ..+ ++++++++ |+
T Consensus 3 ~~~~i~iiG~-G~~G~~~a~~l~~~g~~V~~~~~~~~-------~--~~~~~~~g~~~----~~~---~~~~~~~~--D~ 63 (301)
T 3cky_A 3 KSIKIGFIGL-GAMGKPMAINLLKEGVTVYAFDLMEA-------N--VAAVVAQGAQA----CEN---NQKVAAAS--DI 63 (301)
T ss_dssp -CCEEEEECC-CTTHHHHHHHHHHTTCEEEEECSSHH-------H--HHHHHTTTCEE----CSS---HHHHHHHC--SE
T ss_pred CCCEEEEECc-cHHHHHHHHHHHHCCCeEEEEeCCHH-------H--HHHHHHCCCee----cCC---HHHHHhCC--CE
Confidence 3478999995 99999999999999999999988421 1 11111224332 122 44556666 99
Q ss_pred EEEccc
Q 012176 197 VLHLAA 202 (469)
Q Consensus 197 Vih~Aa 202 (469)
||-+..
T Consensus 64 vi~~vp 69 (301)
T 3cky_A 64 IFTSLP 69 (301)
T ss_dssp EEECCS
T ss_pred EEEECC
Confidence 998763
|
| >2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A* | Back alignment and structure |
|---|
Probab=95.41 E-value=0.029 Score=55.21 Aligned_cols=75 Identities=20% Similarity=0.097 Sum_probs=51.3
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCccE
Q 012176 117 NGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTH 196 (469)
Q Consensus 117 ~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~d~ 196 (469)
.+.+|||+|+ |.||...++.+...|.+|+++++..+ .+... .+.+ +...+ .|..+.+.+.++.. ++|+
T Consensus 180 ~g~~VlV~Ga-G~vG~~a~qlak~~Ga~Vi~~~~~~~----~~~~~-~~~l---Ga~~v-i~~~~~~~~~~~~~--g~D~ 247 (357)
T 2cf5_A 180 PGLRGGILGL-GGVGHMGVKIAKAMGHHVTVISSSNK----KREEA-LQDL---GADDY-VIGSDQAKMSELAD--SLDY 247 (357)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHHTCEEEEEESSTT----HHHHH-HTTS---CCSCE-EETTCHHHHHHSTT--TEEE
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCCeEEEEeCChH----HHHHH-HHHc---CCcee-eccccHHHHHHhcC--CCCE
Confidence 6789999996 99999999999889999999998543 11111 1011 22211 24556666666554 4599
Q ss_pred EEEcccc
Q 012176 197 VLHLAAQ 203 (469)
Q Consensus 197 Vih~Aa~ 203 (469)
||+++|.
T Consensus 248 vid~~g~ 254 (357)
T 2cf5_A 248 VIDTVPV 254 (357)
T ss_dssp EEECCCS
T ss_pred EEECCCC
Confidence 9999985
|
| >1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=95.41 E-value=0.048 Score=54.41 Aligned_cols=76 Identities=22% Similarity=0.169 Sum_probs=51.0
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCC-cEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCH----HHHHHhhc
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGD-GVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDA----PLLTKLFD 190 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~----~~l~~~~~ 190 (469)
..+.+|||+|+ |.||...++.+...|. +|++++++.+ +.+....-+... .|..+. +.+.++..
T Consensus 184 ~~g~~VlV~Ga-G~vG~~aiqlAk~~Ga~~Vi~~~~~~~---------~~~~a~~lGa~~--i~~~~~~~~~~~v~~~t~ 251 (398)
T 1kol_A 184 GPGSTVYVAGA-GPVGLAAAASARLLGAAVVIVGDLNPA---------RLAHAKAQGFEI--ADLSLDTPLHEQIAALLG 251 (398)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEESCHH---------HHHHHHHTTCEE--EETTSSSCHHHHHHHHHS
T ss_pred CCCCEEEEECC-cHHHHHHHHHHHHCCCCeEEEEcCCHH---------HHHHHHHcCCcE--EccCCcchHHHHHHHHhC
Confidence 46789999995 9999999999998998 6888887321 111222235553 344432 34445544
Q ss_pred cCCccEEEEcccc
Q 012176 191 VVPFTHVLHLAAQ 203 (469)
Q Consensus 191 ~~~~d~Vih~Aa~ 203 (469)
+.++|+||+++|.
T Consensus 252 g~g~Dvvid~~G~ 264 (398)
T 1kol_A 252 EPEVDCAVDAVGF 264 (398)
T ss_dssp SSCEEEEEECCCT
T ss_pred CCCCCEEEECCCC
Confidence 4467999999985
|
| >3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=95.37 E-value=0.028 Score=53.15 Aligned_cols=57 Identities=18% Similarity=0.125 Sum_probs=47.9
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCc
Q 012176 115 RPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPF 194 (469)
Q Consensus 115 ~~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~ 194 (469)
...+++++|+|+++.+|+.++..|+..|..|+++.+.. ..+++.++.+
T Consensus 157 ~l~Gk~vvVvGrs~iVG~p~A~lL~~~gAtVtv~h~~t------------------------------~~L~~~~~~A-- 204 (285)
T 3p2o_A 157 DLEGKDAVIIGASNIVGRPMATMLLNAGATVSVCHIKT------------------------------KDLSLYTRQA-- 204 (285)
T ss_dssp CCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC------------------------------SCHHHHHTTC--
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCc------------------------------hhHHHHhhcC--
Confidence 36899999999999999999999999999999998621 2356677777
Q ss_pred cEEEEcccc
Q 012176 195 THVLHLAAQ 203 (469)
Q Consensus 195 d~Vih~Aa~ 203 (469)
|+||...|.
T Consensus 205 DIVI~Avg~ 213 (285)
T 3p2o_A 205 DLIIVAAGC 213 (285)
T ss_dssp SEEEECSSC
T ss_pred CEEEECCCC
Confidence 999998875
|
| >2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=95.35 E-value=0.026 Score=54.12 Aligned_cols=35 Identities=20% Similarity=0.244 Sum_probs=31.7
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCC
Q 012176 118 GMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFN 152 (469)
Q Consensus 118 ~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~ 152 (469)
+++|.|+||.|.+|..++..|.+.|++|++++|+.
T Consensus 21 ~~~I~iIGg~G~mG~~la~~l~~~G~~V~~~~~~~ 55 (298)
T 2pv7_A 21 IHKIVIVGGYGKLGGLFARYLRASGYPISILDRED 55 (298)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTC
T ss_pred CCEEEEEcCCCHHHHHHHHHHHhCCCeEEEEECCc
Confidence 45899999889999999999999999999999843
|
| >4gsl_A Ubiquitin-like modifier-activating enzyme ATG7; ubiquitin-like protein activation enzyme, ubiquitin-like Pro transfer enzyme, protein transport; 2.70A {Saccharomyces cerevisiae} PDB: 3vh2_A 4gsk_A 3vh1_A | Back alignment and structure |
|---|
Probab=95.34 E-value=0.064 Score=56.08 Aligned_cols=36 Identities=33% Similarity=0.305 Sum_probs=30.5
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCC-cEEEEeCCC
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGD-GVLGLDNFN 152 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~-~V~~~~r~~ 152 (469)
..+.+|+|.|+ |.+|..+++.|...|. +++++|...
T Consensus 324 L~~arVLIVGa-GGLGs~vA~~La~aGVG~ItLvD~D~ 360 (615)
T 4gsl_A 324 IKNTKVLLLGA-GTLGCYVSRALIAWGVRKITFVDNGT 360 (615)
T ss_dssp HHTCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECCCB
T ss_pred HhCCeEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCC
Confidence 45679999997 9999999999999996 677777644
|
| >1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1 | Back alignment and structure |
|---|
Probab=95.33 E-value=0.045 Score=54.85 Aligned_cols=72 Identities=25% Similarity=0.161 Sum_probs=49.8
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCC-cEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCc
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGD-GVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPF 194 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~ 194 (469)
..+++|+|+|+ |.+|..+++.|...|. +|++++|... ........+ +...+ +.+++.+++.++
T Consensus 165 l~g~~VlIiGa-G~iG~~~a~~l~~~G~~~V~v~~r~~~-----ra~~la~~~---g~~~~-----~~~~l~~~l~~a-- 228 (404)
T 1gpj_A 165 LHDKTVLVVGA-GEMGKTVAKSLVDRGVRAVLVANRTYE-----RAVELARDL---GGEAV-----RFDELVDHLARS-- 228 (404)
T ss_dssp CTTCEEEEESC-CHHHHHHHHHHHHHCCSEEEEECSSHH-----HHHHHHHHH---TCEEC-----CGGGHHHHHHTC--
T ss_pred ccCCEEEEECh-HHHHHHHHHHHHHCCCCEEEEEeCCHH-----HHHHHHHHc---CCcee-----cHHhHHHHhcCC--
Confidence 46889999997 9999999999999998 8999998321 110111111 33321 234566677776
Q ss_pred cEEEEcccc
Q 012176 195 THVLHLAAQ 203 (469)
Q Consensus 195 d~Vih~Aa~ 203 (469)
|+||.+.+.
T Consensus 229 DvVi~at~~ 237 (404)
T 1gpj_A 229 DVVVSATAA 237 (404)
T ss_dssp SEEEECCSS
T ss_pred CEEEEccCC
Confidence 999999764
|
| >1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A* | Back alignment and structure |
|---|
Probab=95.33 E-value=0.051 Score=52.45 Aligned_cols=83 Identities=19% Similarity=0.115 Sum_probs=54.8
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCc
Q 012176 115 RPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPF 194 (469)
Q Consensus 115 ~~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~ 194 (469)
...+++|+|+|++..+|+.+++.|+..|..|++++|....... +...+............++++++++.+..+
T Consensus 174 ~l~gk~vvVIG~G~iVG~~~A~~L~~~gAtVtv~nR~~~~l~~-----ra~~la~~~~~~t~~~~t~~~~L~e~l~~A-- 246 (320)
T 1edz_A 174 RLYGKKCIVINRSEIVGRPLAALLANDGATVYSVDVNNIQKFT-----RGESLKLNKHHVEDLGEYSEDLLKKCSLDS-- 246 (320)
T ss_dssp TTTTCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSSEEEEEE-----SCCCSSCCCCEEEEEEECCHHHHHHHHHHC--
T ss_pred CCCCCEEEEECCCcchHHHHHHHHHHCCCEEEEEeCchHHHHh-----HHHHHhhhcccccccccccHhHHHHHhccC--
Confidence 3688999999998889999999999999999999874210000 000000000111111113457889999998
Q ss_pred cEEEEccccc
Q 012176 195 THVLHLAAQA 204 (469)
Q Consensus 195 d~Vih~Aa~~ 204 (469)
|+||...+..
T Consensus 247 DIVIsAtg~p 256 (320)
T 1edz_A 247 DVVITGVPSE 256 (320)
T ss_dssp SEEEECCCCT
T ss_pred CEEEECCCCC
Confidence 9999988863
|
| >4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A* | Back alignment and structure |
|---|
Probab=95.32 E-value=0.067 Score=56.05 Aligned_cols=92 Identities=17% Similarity=0.209 Sum_probs=68.2
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCccEEE
Q 012176 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTHVL 198 (469)
Q Consensus 119 ~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~d~Vi 198 (469)
++|+|.|+ |-+|.++++.|.+.|++|++++.+++..... . .++.||.+|++.++++=- .+.|.||
T Consensus 349 ~~viIiG~-G~~G~~la~~L~~~g~~v~vid~d~~~~~~~------------~-~~i~gD~t~~~~L~~agi-~~ad~vi 413 (565)
T 4gx0_A 349 ELIFIIGH-GRIGCAAAAFLDRKPVPFILIDRQESPVCND------------H-VVVYGDATVGQTLRQAGI-DRASGII 413 (565)
T ss_dssp CCEEEECC-SHHHHHHHHHHHHTTCCEEEEESSCCSSCCS------------S-CEEESCSSSSTHHHHHTT-TSCSEEE
T ss_pred CCEEEECC-CHHHHHHHHHHHHCCCCEEEEECChHHHhhc------------C-CEEEeCCCCHHHHHhcCc-cccCEEE
Confidence 78999997 9999999999999999999999877644321 1 789999999998876532 2449988
Q ss_pred EcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEE
Q 012176 199 HLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVW 242 (469)
Q Consensus 199 h~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~ 242 (469)
-+.+. + +.|+ .++..|++.+...++|-
T Consensus 414 ~~~~~--------d-----~~ni----~~~~~ak~l~~~~~iia 440 (565)
T 4gx0_A 414 VTTND--------D-----STNI----FLTLACRHLHSHIRIVA 440 (565)
T ss_dssp ECCSC--------H-----HHHH----HHHHHHHHHCSSSEEEE
T ss_pred EECCC--------c-----hHHH----HHHHHHHHHCCCCEEEE
Confidence 77653 0 2233 44456777777656663
|
| >3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH, oxidoreductase; 1.80A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=95.32 E-value=0.035 Score=51.55 Aligned_cols=33 Identities=21% Similarity=0.516 Sum_probs=28.0
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHCCCcEEE-EeCC
Q 012176 118 GMTVLVTGAAGFVGSHCSLALKKRGDGVLG-LDNF 151 (469)
Q Consensus 118 ~~~VlVtGatG~IG~~l~~~L~~~G~~V~~-~~r~ 151 (469)
+|+|.|+|+ |.+|+.+++.+.++++++.+ ++|.
T Consensus 3 MmkI~ViGa-GrMG~~i~~~l~~~~~eLva~~d~~ 36 (243)
T 3qy9_A 3 SMKILLIGY-GAMNQRVARLAEEKGHEIVGVIENT 36 (243)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTCEEEEEECSS
T ss_pred ceEEEEECc-CHHHHHHHHHHHhCCCEEEEEEecC
Confidence 589999999 99999999999999777665 4553
|
| >1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8 | Back alignment and structure |
|---|
Probab=95.30 E-value=0.064 Score=45.14 Aligned_cols=35 Identities=20% Similarity=0.173 Sum_probs=29.9
Q ss_pred CCCCEEEEEcCC---ChhHHHHHHHHHHCCCcEEEEeC
Q 012176 116 PNGMTVLVTGAA---GFVGSHCSLALKKRGDGVLGLDN 150 (469)
Q Consensus 116 ~~~~~VlVtGat---G~IG~~l~~~L~~~G~~V~~~~r 150 (469)
.+.++|.|.|++ |-+|..+++.|++.|++|+.++.
T Consensus 12 ~~p~~IavIGaS~~~g~~G~~~~~~L~~~G~~V~~vnp 49 (138)
T 1y81_A 12 KEFRKIALVGASKNPAKYGNIILKDLLSKGFEVLPVNP 49 (138)
T ss_dssp --CCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECT
T ss_pred cCCCeEEEEeecCCCCCHHHHHHHHHHHCCCEEEEeCC
Confidence 455789999997 89999999999999999888776
|
| >1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A* | Back alignment and structure |
|---|
Probab=95.29 E-value=0.022 Score=57.76 Aligned_cols=33 Identities=36% Similarity=0.714 Sum_probs=30.1
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCC
Q 012176 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFN 152 (469)
Q Consensus 119 ~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~ 152 (469)
|+|.|+| .|++|..++..|++.|++|++++|+.
T Consensus 1 mkI~VIG-~G~vG~~~A~~la~~G~~V~~~d~~~ 33 (436)
T 1mv8_A 1 MRISIFG-LGYVGAVCAGCLSARGHEVIGVDVSS 33 (436)
T ss_dssp CEEEEEC-CSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred CEEEEEC-CCHHHHHHHHHHHHCCCEEEEEECCH
Confidence 5799999 59999999999999999999999843
|
| >3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B* | Back alignment and structure |
|---|
Probab=95.29 E-value=0.048 Score=51.80 Aligned_cols=36 Identities=19% Similarity=0.166 Sum_probs=32.3
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCC-cEEEEeCCC
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGD-GVLGLDNFN 152 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~-~V~~~~r~~ 152 (469)
..+++|+|+|+ |.+|+.++..|.+.|. +|++++|..
T Consensus 124 l~~k~vlvlGa-Gg~g~aia~~L~~~G~~~v~v~~R~~ 160 (281)
T 3o8q_A 124 LKGATILLIGA-GGAARGVLKPLLDQQPASITVTNRTF 160 (281)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHTTCCSEEEEEESSH
T ss_pred ccCCEEEEECc-hHHHHHHHHHHHhcCCCeEEEEECCH
Confidence 57899999997 8999999999999996 999999943
|
| >4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=95.20 E-value=0.049 Score=54.33 Aligned_cols=75 Identities=16% Similarity=0.187 Sum_probs=52.3
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEec----------------CC
Q 012176 117 NGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGD----------------LN 180 (469)
Q Consensus 117 ~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~D----------------l~ 180 (469)
.+.+|+|+|+ |-+|...++.+...|.+|+++++... .+.... . .+..++..+ ++
T Consensus 189 ~~~kV~ViG~-G~iG~~aa~~a~~lGa~V~v~D~~~~----~l~~~~-~----~G~~~~~~~~~~~~d~~~~~~ya~e~s 258 (405)
T 4dio_A 189 PAAKIFVMGA-GVAGLQAIATARRLGAVVSATDVRPA----AKEQVA-S----LGAKFIAVEDEEFKAAETAGGYAKEMS 258 (405)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSTT----HHHHHH-H----TTCEECCCCC-----------------
T ss_pred CCCEEEEECC-cHHHHHHHHHHHHCCCEEEEEcCCHH----HHHHHH-H----cCCceeecccccccccccccchhhhcc
Confidence 4578999997 99999999999999999999998654 111111 1 133332221 22
Q ss_pred C------HHHHHHhhccCCccEEEEcccc
Q 012176 181 D------APLLTKLFDVVPFTHVLHLAAQ 203 (469)
Q Consensus 181 d------~~~l~~~~~~~~~d~Vih~Aa~ 203 (469)
+ .+.++++++++ |+||.++..
T Consensus 259 ~~~~~~~~~~l~e~l~~a--DVVI~tvli 285 (405)
T 4dio_A 259 GEYQVKQAALVAEHIAKQ--DIVITTALI 285 (405)
T ss_dssp CHHHHHHHHHHHHHHHTC--SEEEECCCC
T ss_pred hhhhhhhHhHHHHHhcCC--CEEEECCcC
Confidence 2 24788889888 999998754
|
| >3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=95.14 E-value=0.053 Score=51.27 Aligned_cols=36 Identities=19% Similarity=0.116 Sum_probs=32.3
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCC-cEEEEeCCC
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGD-GVLGLDNFN 152 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~-~V~~~~r~~ 152 (469)
..+++++|+|+ |.+|+.++..|.+.|. +|++++|..
T Consensus 118 l~~k~~lvlGa-Gg~~~aia~~L~~~G~~~v~i~~R~~ 154 (272)
T 3pwz_A 118 LRNRRVLLLGA-GGAVRGALLPFLQAGPSELVIANRDM 154 (272)
T ss_dssp CTTSEEEEECC-SHHHHHHHHHHHHTCCSEEEEECSCH
T ss_pred ccCCEEEEECc-cHHHHHHHHHHHHcCCCEEEEEeCCH
Confidence 57899999997 8999999999999995 999999943
|
| >3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=95.14 E-value=0.098 Score=50.37 Aligned_cols=71 Identities=14% Similarity=0.157 Sum_probs=46.1
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCC-cEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCc
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGD-GVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPF 194 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~ 194 (469)
..+|+|.|+|. |.+|..+++.|.+.|+ +|++.+|+. ...........++... .+..++++++
T Consensus 22 ~~~~~I~iIG~-G~mG~~~A~~L~~~G~~~V~~~dr~~-------~~~~~~~~~~~g~~~~-------~~~~e~~~~a-- 84 (312)
T 3qsg_A 22 SNAMKLGFIGF-GEAASAIASGLRQAGAIDMAAYDAAS-------AESWRPRAEELGVSCK-------ASVAEVAGEC-- 84 (312)
T ss_dssp ---CEEEEECC-SHHHHHHHHHHHHHSCCEEEEECSSC-------HHHHHHHHHHTTCEEC-------SCHHHHHHHC--
T ss_pred CCCCEEEEECc-cHHHHHHHHHHHHCCCCeEEEEcCCC-------CHHHHHHHHHCCCEEe-------CCHHHHHhcC--
Confidence 45689999995 9999999999999999 999999842 0011111112243321 2345566777
Q ss_pred cEEEEcccc
Q 012176 195 THVLHLAAQ 203 (469)
Q Consensus 195 d~Vih~Aa~ 203 (469)
|+||-+...
T Consensus 85 DvVi~~vp~ 93 (312)
T 3qsg_A 85 DVIFSLVTA 93 (312)
T ss_dssp SEEEECSCT
T ss_pred CEEEEecCc
Confidence 999987643
|
| >4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major} | Back alignment and structure |
|---|
Probab=95.14 E-value=0.052 Score=51.70 Aligned_cols=56 Identities=20% Similarity=0.178 Sum_probs=47.3
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHH--HhhccCC
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLT--KLFDVVP 193 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~--~~~~~~~ 193 (469)
..+++|+|.|+++.+|+.++..|++.|..|+++.|... .++ +.++.+
T Consensus 163 l~Gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~~~~T~------------------------------~l~l~~~~~~A- 211 (300)
T 4a26_A 163 MAGKRAVVLGRSNIVGAPVAALLMKENATVTIVHSGTS------------------------------TEDMIDYLRTA- 211 (300)
T ss_dssp CTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTSC------------------------------HHHHHHHHHTC-
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCCC------------------------------CchhhhhhccC-
Confidence 68999999999999999999999999999999987221 233 677777
Q ss_pred ccEEEEcccc
Q 012176 194 FTHVLHLAAQ 203 (469)
Q Consensus 194 ~d~Vih~Aa~ 203 (469)
|+||...+.
T Consensus 212 -DIVI~Avg~ 220 (300)
T 4a26_A 212 -DIVIAAMGQ 220 (300)
T ss_dssp -SEEEECSCC
T ss_pred -CEEEECCCC
Confidence 999998886
|
| >3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=95.13 E-value=0.052 Score=51.88 Aligned_cols=65 Identities=12% Similarity=0.084 Sum_probs=46.4
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCccEE
Q 012176 118 GMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTHV 197 (469)
Q Consensus 118 ~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~d~V 197 (469)
.|+|.|+| .|.+|..+++.|++.|++|++.+|+.+..+. ... .++.. ..+++++++ + |+|
T Consensus 15 ~~~I~vIG-~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~----~~~-----~g~~~-------~~~~~~~~~-a--Dvv 74 (296)
T 3qha_A 15 QLKLGYIG-LGNMGAPMATRMTEWPGGVTVYDIRIEAMTP----LAE-----AGATL-------ADSVADVAA-A--DLI 74 (296)
T ss_dssp CCCEEEEC-CSTTHHHHHHHHTTSTTCEEEECSSTTTSHH----HHH-----TTCEE-------CSSHHHHTT-S--SEE
T ss_pred CCeEEEEC-cCHHHHHHHHHHHHCCCeEEEEeCCHHHHHH----HHH-----CCCEE-------cCCHHHHHh-C--CEE
Confidence 46899999 5999999999999999999999997653322 111 13322 123556666 6 999
Q ss_pred EEccc
Q 012176 198 LHLAA 202 (469)
Q Consensus 198 ih~Aa 202 (469)
|-+..
T Consensus 75 i~~vp 79 (296)
T 3qha_A 75 HITVL 79 (296)
T ss_dssp EECCS
T ss_pred EEECC
Confidence 98764
|
| >1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A* | Back alignment and structure |
|---|
Probab=95.10 E-value=0.045 Score=54.50 Aligned_cols=37 Identities=27% Similarity=0.287 Sum_probs=32.9
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCC
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNS 153 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~ 153 (469)
..+++|+|+|+ |-+|..+++.+...|.+|++++|...
T Consensus 170 l~g~~V~ViGa-G~iG~~aa~~a~~~Ga~V~~~d~~~~ 206 (384)
T 1l7d_A 170 VPPARVLVFGV-GVAGLQAIATAKRLGAVVMATDVRAA 206 (384)
T ss_dssp ECCCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCST
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 46789999996 99999999999999999999998654
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 469 | ||||
| d1kewa_ | 361 | c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) { | 1e-75 | |
| d2b69a1 | 312 | c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 | 2e-73 | |
| d1r6da_ | 322 | c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) { | 2e-69 | |
| d1sb8a_ | 341 | c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase W | 5e-66 | |
| d1db3a_ | 357 | c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escheric | 1e-65 | |
| d1udca_ | 338 | c.2.1.2 (A:) Uridine diphosphogalactose-4-epimeras | 1e-65 | |
| d1t2aa_ | 347 | c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (H | 2e-57 | |
| d1z45a2 | 347 | c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-ep | 1e-55 | |
| d1rpna_ | 321 | c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomo | 5e-54 | |
| d1ek6a_ | 346 | c.2.1.2 (A:) Uridine diphosphogalactose-4-epimeras | 2e-53 | |
| d1oc2a_ | 346 | c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) { | 1e-52 | |
| d1e6ua_ | 315 | c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimeras | 1e-52 | |
| d1n7ha_ | 339 | c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cr | 8e-50 | |
| d2c5aa1 | 363 | c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {T | 9e-50 | |
| d1orra_ | 338 | c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella | 9e-47 | |
| d1gy8a_ | 383 | c.2.1.2 (A:) Uridine diphosphogalactose-4-epimeras | 2e-40 | |
| d1rkxa_ | 356 | c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia | 1e-36 | |
| d1i24a_ | 393 | c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 | 1e-28 | |
| d2blla1 | 342 | c.2.1.2 (A:316-657) Polymyxin resistance protein A | 9e-27 | |
| d1y1pa1 | 342 | c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolo | 3e-22 | |
| d1eq2a_ | 307 | c.2.1.2 (A:) ADP-L-glycero-D-mannoheptose 6-epimer | 7e-22 | |
| d1qyda_ | 312 | c.2.1.2 (A:) Pinoresinol-lariciresinol reductase { | 5e-16 | |
| d2q46a1 | 252 | c.2.1.2 (A:2-253) Hypothetical protein At5g02240 ( | 1e-15 | |
| d1qyca_ | 307 | c.2.1.2 (A:) Phenylcoumaran benzylic ether reducta | 3e-15 | |
| d1vl0a_ | 281 | c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD | 3e-15 | |
| d1n2sa_ | 298 | c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reduct | 2e-12 | |
| d1hdoa_ | 205 | c.2.1.2 (A:) Biliverdin IX beta reductase {Human ( | 7e-09 | |
| d1xgka_ | 350 | c.2.1.2 (A:) Negative transcriptional regulator Nm | 4e-08 | |
| d2gdza1 | 254 | c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrog | 3e-06 | |
| d1zk4a1 | 251 | c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase | 9e-06 | |
| d1xkqa_ | 272 | c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorh | 1e-05 | |
| d1zema1 | 260 | c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconoba | 2e-05 | |
| d1xhla_ | 274 | c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorh | 5e-05 | |
| d1xg5a_ | 257 | c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC41 | 2e-04 | |
| d1spxa_ | 264 | c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nemato | 3e-04 | |
| d1cyda_ | 242 | c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus muscul | 5e-04 | |
| d2a35a1 | 212 | c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pse | 5e-04 | |
| d1vl8a_ | 251 | c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga | 5e-04 | |
| d2fr1a1 | 259 | c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI | 5e-04 | |
| d2bkaa1 | 232 | c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {H | 6e-04 | |
| d2bgka1 | 268 | c.2.1.2 (A:11-278) Rhizome secoisolariciresinol de | 0.001 | |
| d1w6ua_ | 294 | c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondr | 0.002 | |
| d1x1ta1 | 260 | c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydroge | 0.002 | |
| d7mdha1 | 175 | c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum ( | 0.003 | |
| d1dhra_ | 236 | c.2.1.2 (A:) Dihydropteridin reductase (pteridine | 0.003 |
| >d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} Length = 361 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Score = 239 bits (610), Expect = 1e-75
Identities = 78/360 (21%), Positives = 143/360 (39%), Gaps = 37/360 (10%)
Query: 119 MTVLVTGAAGFVGSHCSLALKKRG-DGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEG 177
M +L+TG AGF+GS + K D V+ +D Y +L+ + + ++
Sbjct: 1 MKILITGGAGFIGSAVVRHIIKNTQDTVVNIDKLT--YAGNLES-LSDISESNRYNFEHA 57
Query: 178 DLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQ 237
D+ D+ +T++F+ V+HLAA++ V ++ P +++ +NI G LLEV +
Sbjct: 58 DICDSAEITRIFEQYQPDAVMHLAAESHVDRSITGPAAFIETNIVGTYALLEVARKYWSA 117
Query: 238 PS--------IVWASSSSVYG---------LNTQVPFSESHRTDQPASLYAATKKAGEEI 280
S+ VYG + +P P+S Y+A+K + + +
Sbjct: 118 LGEDKKNNFRFHHISTDEVYGDLPHPDEVENSVTLPLFTETTAYAPSSPYSASKASSDHL 177
Query: 281 AHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFT 340
+ YGL YGP+ P+ + L+GK + +Y + RD+
Sbjct: 178 VRAWRRTYGLPTIVTNCSNNYGPYHFPEKLIPLVILNALEGKPLPIY---GKGDQIRDWL 234
Query: 341 YIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAK------ 394
Y++D + G YN+G + +V + +LL+
Sbjct: 235 YVEDHARALHMVVTEGKAG------ETYNIGGHNEKKNLDVVFTICDLLDEIVPKATSYR 288
Query: 395 -KHVIRMPRNGDVPYTHANVSLAYKDFGYKPTTDLAAGLRKFVKWYVSYYGIQPRVKKEN 453
+ R G + ++ G+KP +G+RK V+WY++ VK
Sbjct: 289 EQITYVADRPGHDRRYAIDAGKISRELGWKPLETFESGIRKTVEWYLANTQWVNNVKSGA 348
|
| >d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 312 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-glucuronate decarboxylase 1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 232 bits (592), Expect = 2e-73
Identities = 77/329 (23%), Positives = 131/329 (39%), Gaps = 30/329 (9%)
Query: 121 VLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLN 180
+L+TG AGFVGSH + L G V +DNF + +++ + ++ D+
Sbjct: 4 ILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVE----HWIGHENFELINHDVV 59
Query: 181 DAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSI 240
+ + + HLA+ A M NP + +N G +N+L + K V + +
Sbjct: 60 EPLY-------IEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGAR--L 110
Query: 241 VWASSSSVYGLNTQVPFSESHRTD----QPASLYAATKKAGEEIAHTYNHIYGLALTGLR 296
+ AS+S VYG P SE + P + Y K+ E + + Y G+ + R
Sbjct: 111 LLASTSEVYGDPEVHPQSEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVRVAR 170
Query: 297 FFTVYGPWGRPDMAYFF--FTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGATG 354
F +GP + F LQG+ + VY R F Y+ D+V G V
Sbjct: 171 IFNTFGPRMHMNDGRVVSNFILQALQGEPLTVY---GSGSQTRAFQYVSDLVNGLVALMN 227
Query: 355 SGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRNGDVPYTHANVS 414
S NLGN + +++NL+ + ++ + D ++
Sbjct: 228 SNVSS-------PVNLGNPEEHTILEFAQLIKNLVGSGSEIQFLSE-AQDDPQKRKPDIK 279
Query: 415 LAYKDFGYKPTTDLAAGLRKFVKWYVSYY 443
A G++P L GL K + ++
Sbjct: 280 KAKLMLGWEPVVPLEEGLNKAIHYFRKEL 308
|
| >d1r6da_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces venezuelae [TaxId: 54571]} Length = 322 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptomyces venezuelae [TaxId: 54571]
Score = 222 bits (565), Expect = 2e-69
Identities = 80/324 (24%), Positives = 130/324 (40%), Gaps = 16/324 (4%)
Query: 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYD--PSLKRARQKLLQKHQVF-IV 175
M +LVTG AGF+GSH L + D + RA + V
Sbjct: 1 MRLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRANLAPVDADPRLRFV 60
Query: 176 EGDLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVN 235
GD+ DA L ++ ++H AA++ V ++ + +N+ G LL+
Sbjct: 61 HGDIRDAGL--LARELRGVDAIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVD-A 117
Query: 236 PQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIYGLALTGL 295
+V S++ VYG ++ES + P S YAA+K + +A Y+ YGL +
Sbjct: 118 GVGRVVHVSTNQVYGSIDSGSWTESSPLE-PNSPYAASKAGSDLVARAYHRTYGLDVRIT 176
Query: 296 RFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGATGS 355
R YGP+ P+ F ++L G T+ +Y D R++ + DD +G
Sbjct: 177 RCCNNYGPYQHPEKLIPLFVTNLLDGGTLPLYG---DGANVREWVHTDDHCRGIALVLAG 233
Query: 356 GGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRNGDVPYTHANVSL 415
G +Y++G + L IL + L R G +
Sbjct: 234 GRAG------EIYHIGGGLELTNRELTGILLDSLGADWSSVRKVADRKGHDLRYSLDGGK 287
Query: 416 AYKDFGYKPTTDLAAGLRKFVKWY 439
++ GY+P A GL + V+WY
Sbjct: 288 IERELGYRPQVSFADGLARTVRWY 311
|
| >d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]} Length = 341 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-N-acetylglucosamine 4-epimerase WbpP species: Pseudomonas aeruginosa [TaxId: 287]
Score = 213 bits (543), Expect = 5e-66
Identities = 99/332 (29%), Positives = 155/332 (46%), Gaps = 17/332 (5%)
Query: 120 TVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDL 179
L+TG AGF+GS+ L K V+GLDNF + + +L R + +K
Sbjct: 18 VWLITGVAGFIGSNLLETLLKLDQKVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQG 77
Query: 180 NDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPS 239
+ L +VLH AA V ++ +P + A+NI GF+N+L + Q
Sbjct: 78 DIRNLDDCNNACAGVDYVLHQAALGSVPRSINDPITSNATNIDGFLNMLIAARDAKVQS- 136
Query: 240 IVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIYGLALTGLRFFT 299
+A+SSS YG + +P E P S YA TK E A ++ YG + GLR+F
Sbjct: 137 FTYAASSSTYGDHPGLPKVEDTIGK-PLSPYAVTKYVNELYADVFSRCYGFSTIGLRYFN 195
Query: 300 VYGPWGRPDMAYFF----FTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGATGS 355
V+G P+ AY +T ++QG + + D E +RDF YI++ V+ + A
Sbjct: 196 VFGRRQDPNGAYAAVIPKWTSSMIQGDDVYING---DGETSRDFCYIENTVQANLLAA-- 250
Query: 356 GGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKH----VIRMPRNGDVPYTHA 411
A+ +VYN+ + +L L + L + V R R GDV ++ A
Sbjct: 251 --TAGLDARNQVYNIAVGGRTSLNQLFFALRDGLAENGVSYHREPVYRDFREGDVRHSLA 308
Query: 412 NVSLAYKDFGYKPTTDLAAGLRKFVKWYVSYY 443
++S A K GY P D++AG+ + WY+ +
Sbjct: 309 DISKAAKLLGYAPKYDVSAGVALAMPWYIMFL 340
|
| >d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]} Length = 357 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Escherichia coli [TaxId: 562]
Score = 213 bits (543), Expect = 1e-65
Identities = 72/371 (19%), Positives = 125/371 (33%), Gaps = 53/371 (14%)
Query: 120 TVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPS-LKRARQKLLQKH-QVFIVEG 177
L+TG G GS+ + L ++G V G+ S ++ + Q + + + G
Sbjct: 3 VALITGVTGQDGSYLAEFLLEKGYEVHGIKRRASSFNTERVDHIYQDPHTCNPKFHLHYG 62
Query: 178 DLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCK--SVN 235
DL+D LT++ V V +L A + V + ++P+ + G + LLE + +
Sbjct: 63 DLSDTSNLTRILREVQPDEVYNLGAMSHVAVSFESPEYTADVDAMGTLRLLEAIRFLGLE 122
Query: 236 PQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIYGLALTGL 295
+ AS+S +YGL ++P E+ P S YA K I Y YG+
Sbjct: 123 KKTRFYQASTSELYGLVQEIPQKETTPFY-PRSPYAVAKLYAYWITVNYRESYGMYACNG 181
Query: 296 RFFTVYGPWGRPDMAYFFFT---KDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGA 352
F P T +I QG +Y + + RD+ + D VK
Sbjct: 182 ILFNHESPRRGETFVTRKITRAIANIAQGLESCLYL--GNMDSLRDWGHAKDYVKMQWMM 239
Query: 353 TGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVI-------------- 398
+ + V + V + L K +
Sbjct: 240 LQQEQP-------EDFVIATGVQYSVRQFVEMAAAQLGIKLRFEGTGVEEKGIVVSVTGH 292
Query: 399 ----------------RMPRNGDVPYTHANVSLAYKDFGYKPTTDLAAGLRKFVKWYVSY 442
R R +V + + A++ G+KP L + + V +
Sbjct: 293 DAPGVKPGDVIIAVDPRYFRPAEVETLLGDPTKAHEKLGWKPEITLREMVSEMVANDLEA 352
Query: 443 YGIQPRVKKEN 453
KK +
Sbjct: 353 A------KKHS 357
|
| >d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]} Length = 338 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Escherichia coli [TaxId: 562]
Score = 212 bits (540), Expect = 1e-65
Identities = 82/340 (24%), Positives = 141/340 (41%), Gaps = 22/340 (6%)
Query: 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGD 178
M VLVTG +G++GSH + L + G V+ LDN + L + L VEGD
Sbjct: 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIER--LGGKHPTFVEGD 58
Query: 179 LNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQP 238
+ + L+T++ V+H A V ++Q P Y +N+ G + L+ ++ N +
Sbjct: 59 IRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVK- 117
Query: 239 SIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIY-GLALTGLRF 297
+ +++SS++VYG ++P+ ES T P S Y +K E+I ++ LR+
Sbjct: 118 NFIFSSSATVYGDQPKIPYVESFPTGTPQSPYGKSKLMVEQILTDLQKAQPDWSIALLRY 177
Query: 298 FTVYGPWGRPDMAY-----------FFFTKDILQGKTIDVYKTQD---DREVARDFTYID 343
F G DM + + + ++ ++ D RD+ ++
Sbjct: 178 FNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIHVM 237
Query: 344 DVVKGCVGATGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRN 403
D+ G V A K G +YNLG V +V+ H R
Sbjct: 238 DLADGHVVAMEKLANKPGV---HIYNLGAGVGNSVLDVVNAFSKACGKPVNYHFAPR-RE 293
Query: 404 GDVPYTHANVSLAYKDFGYKPTTDLAAGLRKFVKWYVSYY 443
GD+P A+ S A ++ ++ T L + W +
Sbjct: 294 GDLPAYWADASKADRELNWRVTRTLDEMAQDTWHWQSRHP 333
|
| >d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]} Length = 347 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Human (Homo sapiens) [TaxId: 9606]
Score = 191 bits (486), Expect = 2e-57
Identities = 67/342 (19%), Positives = 122/342 (35%), Gaps = 20/342 (5%)
Query: 121 VLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKH---QVFIVEG 177
L+TG G GS+ + L ++G V G+ +S ++ K Q H + + G
Sbjct: 4 ALITGITGQDGSYLAEFLLEKGYEVHGIVRRSSSFNTGRIEHLYKNPQAHIEGNMKLHYG 63
Query: 178 DLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCK--SVN 235
DL D+ L K+ + V T + +L AQ+ V+ + + + G + LL+ K +
Sbjct: 64 DLTDSTCLVKIINEVKPTEIYNLGAQSHVKISFDLAEYTADVDGVGTLRLLDAVKTCGLI 123
Query: 236 PQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIYGLALTGL 295
AS+S +YG ++P E+ P S Y A K I + Y L
Sbjct: 124 NSVKFYQASTSELYGKVQEIPQKETTPFY-PRSPYGAAKLYAYWIVVNFREAYNLFAVNG 182
Query: 296 RFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQD-DREVARDFTYIDDVVKGC----- 349
F P + ++ + + + + + RD+ + D V+
Sbjct: 183 ILFNHESPRRGANFVTRKISRSVAKIYLGQLECFSLGNLDAKRDWGHAKDYVEAMWLMLQ 242
Query: 350 -------VGATGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAK-KHVIRMP 401
V ATG R + ++G T + K ++
Sbjct: 243 NDEPEDFVIATGEVHSVREFVEKSFLHIGKTIVWEGKNENEVGRCKETGKVHVTVDLKYY 302
Query: 402 RNGDVPYTHANVSLAYKDFGYKPTTDLAAGLRKFVKWYVSYY 443
R +V + + + A + +KP +R+ V V
Sbjct: 303 RPTEVDFLQGDCTKAKQKLNWKPRVAFDELVREMVHADVELM 344
|
| >d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 347 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 186 bits (473), Expect = 1e-55
Identities = 84/343 (24%), Positives = 130/343 (37%), Gaps = 30/343 (8%)
Query: 120 TVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDL 179
VLVTG AG++GSH + L + G + DN ++ S+ R ++L KH + E DL
Sbjct: 3 IVLVTGGAGYIGSHTVVELIENGYDCVVADNLSNSTYDSVA--RLEVLTKHHIPFYEVDL 60
Query: 180 NDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPS 239
D L K+F V+H A V + Q P Y +NI G V LLE+ + N
Sbjct: 61 CDRKGLEKVFKEYKIDSVIHFAGLKAVGESTQIPLRYYHNNILGTVVLLELMQQYNVSK- 119
Query: 240 IVWASSSSVYGLNTQVPFSES---HRTDQPASLYAATKKAGEEIAHTYN--HIYGLALTG 294
V++SS++VYG T+ P P + Y TK A E I +
Sbjct: 120 FVFSSSATVYGDATRFPNMIPIPEECPLGPTNPYGHTKYAIENILNDLYNSDKKSWKFAI 179
Query: 295 LRFFTVY----------GPWGRPD-MAYFFFTKDILQGKTIDVYKTQDDREVARDFTYID 343
LR+F P G P+ + + + + + + ++ D +RD T I
Sbjct: 180 LRYFNPIGAHPSGLIGEDPLGIPNNLLPYMAQVAVGRREKLYIFG---DDYDSRDGTPIR 236
Query: 344 DVVKGCVGATGSGGKKR-------GPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKH 396
D + A G + R +NLG+ V +
Sbjct: 237 DYIHVVDLAKGHIAALQYLEAYNENEGLCREWNLGSGKGSTVFEVYHAFCKASGIDLPYK 296
Query: 397 VIRMPRNGDVPYTHANVSLAYKDFGYKPTTDLAAGLRKFVKWY 439
V R GDV A A ++ ++ + + KW
Sbjct: 297 VTGR-RAGDVLNLTAKPDRAKRELKWQTELQVEDSCKDLWKWT 338
|
| >d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]} Length = 321 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 181 bits (460), Expect = 5e-54
Identities = 71/339 (20%), Positives = 123/339 (36%), Gaps = 25/339 (7%)
Query: 120 TVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDL 179
+ LVTG G G++ + L ++G V GL S R +L + + +GD+
Sbjct: 2 SALVTGITGQDGAYLAKLLLEKGYRVHGLVARRSSDTRWRLR---ELGIEGDIQYEDGDM 58
Query: 180 NDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPS 239
DA + + V +LAAQ+ V + P + + G +LLE + +P+
Sbjct: 59 ADACSVQRAVIKAQPQEVYNLAAQSFVGASWNQPVTTGVVDGLGVTHLLEAIRQFSPETR 118
Query: 240 IVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIYGLALTGLRFFT 299
AS+S ++GL E+ S Y K G I Y +GL + F
Sbjct: 119 FYQASTSEMFGLIQAERQDENTPFYP-RSPYGVAKLYGHWITVNYRESFGLHASSGILFN 177
Query: 300 VYGPWGRPDMAYFFFTKDILQ---GKTIDVYKTQDDREVARDFTYIDDVVKGCVGATGSG 356
P + T + + GK ++ + + RD+ + D V+
Sbjct: 178 HESPLRGIEFVTRKVTDAVARIKLGKQQELRLG--NVDAKRDWGFAGDYVEAMWLMLQQD 235
Query: 357 GKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMP---RNGDVPYTHANV 413
+ Y + V + I + + + P R +V N
Sbjct: 236 -------KADDYVVATGVTTTVRDMCQIAFEHVGLDYRDFLKIDPAFFRPAEVDVLLGNP 288
Query: 414 SLAYKDFGYKPTTDLAAGLRKFVKWYVSYYGIQPRVKKE 452
+ A + G+KP T L +R V+ + RV +E
Sbjct: 289 AKAQRVLGWKPRTSLDELIRMMVEADLR------RVSRE 321
|
| >d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]} Length = 346 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Human (Homo sapiens) [TaxId: 9606]
Score = 180 bits (457), Expect = 2e-53
Identities = 94/350 (26%), Positives = 150/350 (42%), Gaps = 29/350 (8%)
Query: 119 MT--VLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKR----ARQKLLQKHQV 172
M VLVTG AG++GSH L L + G + +DNF++ + R + L V
Sbjct: 1 MAEKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSV 60
Query: 173 FIVEGDLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCK 232
E D+ D L +LF F V+H A V ++Q P Y N+ G + LLE+ K
Sbjct: 61 EFEEMDILDQGALQRLFKKYSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMK 120
Query: 233 SVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIY-GLA 291
+ + +V++SS++VYG +P E+H T + Y +K EE+
Sbjct: 121 AHGVKN-LVFSSSATVYGNPQYLPLDEAHPTGGCTNPYGKSKFFIEEMIRDLCQADKTWN 179
Query: 292 LTGLRFFTVYGP----------WGRPDM-AYFFFTKDILQGKTIDVYKTQD---DREVAR 337
LR+F G G P+ + I + + ++V+ D R
Sbjct: 180 AVLLRYFNPTGAHASGCIGEDPQGIPNNLMPYVSQVAIGRREALNVFGNDYDTEDGTGVR 239
Query: 338 DFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHV 397
D+ ++ D+ KG + A ++ G R+YNLG + V ++V +E K V
Sbjct: 240 DYIHVVDLAKGHIAALRKLKEQCGC---RIYNLGTGTGYSVLQMVQAMEKASGKKIPYKV 296
Query: 398 IRMPRNGDVPYTHANVSLAYKDFGYKPTTDLAAGLRKFVKWYV---SYYG 444
+ R GDV +AN SLA ++ G+ L +W S +G
Sbjct: 297 VAR-REGDVAACYANPSLAQEELGWTAALGLDRMCEDLWRWQKQNPSGFG 345
|
| >d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} Length = 346 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Score = 178 bits (452), Expect = 1e-52
Identities = 67/336 (19%), Positives = 120/336 (35%), Gaps = 33/336 (9%)
Query: 119 MTVLVTGAAGFVGSHCSLALKKRGDG--VLGLDNFNSYYDPSLKRARQKLLQKHQVFIVE 176
++VTG AGF+GS+ + V LD +A + + +V +V
Sbjct: 3 KNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAG----NKANLEAILGDRVELVV 58
Query: 177 GDLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNP 236
GD+ DA L+ KL H AA++ ++ +P ++ +N G LL +
Sbjct: 59 GDIADAELVDKLAAKADAIV--HYAAESHNDNSLNDPSPFIHTNFIGTYTLL--EAARKY 114
Query: 237 QPSIVWASSSSVYG------------LNTQVPFSESHRTDQPASLYAATKKAGEEIAHTY 284
S+ VYG F+ + P+S Y++TK A + I +
Sbjct: 115 DIRFHHVSTDEVYGDLPLREDLPGHGEGPGEKFTAETNYN-PSSPYSSTKAASDLIVKAW 173
Query: 285 NHIYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDD 344
+G+ T YGP+ + +IL G +Y + + RD+ + +D
Sbjct: 174 VRSFGVKATISNCSNNYGPYQHIEKFIPRQITNILAGIKPKLYG---EGKNVRDWIHTND 230
Query: 345 VVKGCVGATGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRNG 404
G G N ++ ++ + + R G
Sbjct: 231 HSTGVWAILTKGRMGETYLIGADGEKNNKE------VLELILEKMGQPKDAYDHVTDRAG 284
Query: 405 DVPYTHANVSLAYKDFGYKPT-TDLAAGLRKFVKWY 439
+ S + G+ P TD + GL + ++WY
Sbjct: 285 HDLRYAIDASKLRDELGWTPQFTDFSEGLEETIQWY 320
|
| >d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]} Length = 315 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) species: Escherichia coli [TaxId: 562]
Score = 177 bits (450), Expect = 1e-52
Identities = 62/333 (18%), Positives = 109/333 (32%), Gaps = 40/333 (12%)
Query: 121 VLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLN 180
V + G G VGS L++RGD L L + E +L
Sbjct: 5 VFIAGHRGMVGSAIRRQLEQRGDVELVLRTRD-----------------------ELNLL 41
Query: 181 DAPLLTKLFDVVPFTHVLHLAAQAGVRYA-MQNPQSYVASNIAGFVNLLEVCKSVNPQPS 239
D+ + F V AA+ G A P ++ N+ N++ N
Sbjct: 42 DSRAVHDFFASERIDQVYLAAAKVGGIVANNTYPADFIYQNMMIESNIIHAAHQ-NDVNK 100
Query: 240 IVWASSSSVYGLNTQVPFSESHRT----DQPASLYAATKKAGEEIAHTYNHIYGLALTGL 295
+++ SS +Y + P +ES + YA K AG ++ +YN YG +
Sbjct: 101 LLFLGSSCIYPKLAKQPMAESELLQGTLEPTNEPYAIAKIAGIKLCESYNRQYGRDYRSV 160
Query: 296 RFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQD------DREVARDFTYIDDVVKG- 348
+YGP + +L+ + R+F ++DD+
Sbjct: 161 MPTNLYGPHDNFHPSNSHVIPALLRRFHEATAQKAPDVVVWGSGTPMREFLHVDDMAAAS 220
Query: 349 --CVGATGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRNGDV 406
+ + L N+G + L + ++ K + V +
Sbjct: 221 IHVMELAHEVWLENTQPMLSHINVGTGVDCTIRELAQTIAKVVGYKGRV-VFDASKPDGT 279
Query: 407 PYTHANVSLAYKDFGYKPTTDLAAGLRKFVKWY 439
P +V+ G+ L AGL +W+
Sbjct: 280 PRKLLDVTRL-HQLGWYHEISLEAGLASTYQWF 311
|
| >d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 339 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 171 bits (432), Expect = 8e-50
Identities = 75/346 (21%), Positives = 121/346 (34%), Gaps = 19/346 (5%)
Query: 120 TVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLK---RARQKLLQKHQVFIVE 176
L+TG G GS+ + L +G V GL +S ++ + K + +
Sbjct: 3 IALITGITGQDGSYLTEFLLGKGYEVHGLIRRSSNFNTQRINHIYIDPHNVNKALMKLHY 62
Query: 177 GDLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNP 236
DL DA L + DV+ V +LAAQ+ V + + P G + LLE +S
Sbjct: 63 ADLTDASSLRRWIDVIKPDEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRSHTI 122
Query: 237 QPSIVW---ASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIYGLALT 293
+ SS +T P SE+ P S YAA+K A Y YGL
Sbjct: 123 DSGRTVKYYQAGSSEMFGSTPPPQSETTPFH-PRSPYAASKCAAHWYTVNYREAYGLFAC 181
Query: 294 GLRFFTVYGPWGRPDMAYFFFT---KDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCV 350
F P + T I G ++ + + +RD+ + D V+
Sbjct: 182 NGILFNHESPRRGENFVTRKITRALGRIKVGLQTKLFL--GNLQASRDWGFAGDYVEAMW 239
Query: 351 GATGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMP-RNGDVPYT 409
++ V V VS LN K + + R +V
Sbjct: 240 LML-----QQEKPDDYVVATEEGHTVEEFLDVSFGYLGLNWKDYVEIDQRYFRPAEVDNL 294
Query: 410 HANVSLAYKDFGYKPTTDLAAGLRKFVKWYVSYYGIQPRVKKENGF 455
+ S A + G+KP ++ V + + +V + G+
Sbjct: 295 QGDASKAKEVLGWKPQVGFEKLVKMMVDEDLELAK-REKVLVDAGY 339
|
| >d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 363 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose-3', 5'-epimerase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 171 bits (434), Expect = 9e-50
Identities = 63/332 (18%), Positives = 117/332 (35%), Gaps = 26/332 (7%)
Query: 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGD 178
+ + +TGA GF+ SH + LK G V+ D + + + D
Sbjct: 16 LKISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMTEDMFCDE---------FHLVD 66
Query: 179 LNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQP 238
L K+ + V L A G+ + N + +N N++E + +
Sbjct: 67 LRVMENCLKVTEGVDHVFNLA-ADMGGMGFIQSNHSVIMYNNTMISFNMIEAARINGIKR 125
Query: 239 SIVWASSSSVYGLNTQVPFSESHRTD-----QPASLYAATKKAGEEIAHTYNHIYGLALT 293
+S+ + S + +P + K A EE+ YN +G+
Sbjct: 126 FFYASSACIYPEFKQLETTNVSLKESDAWPAEPQDAFGLEKLATEELCKHYNKDFGIECR 185
Query: 294 GLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQD--DREVARDFTYIDDVVKGCVG 351
RF +YGP+G + + + D R FT+ID+ V+G +
Sbjct: 186 IGRFHNIYGPFGTWKGGREKAPAAFCRKAQTSTDRFEMWGDGLQTRSFTFIDECVEGVLR 245
Query: 352 ATGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRNGDVPYTHA 411
T S ++ N+G+ V + + ++ + K + +P V ++
Sbjct: 246 LTKSDFRE-------PVNIGSDEMVSMNEMAEMVLSFEEKKLP--IHHIPGPEGVRGRNS 296
Query: 412 NVSLAYKDFGYKPTTDLAAGLRKFVKWYVSYY 443
+ +L + G+ P L GLR W
Sbjct: 297 DNNLIKEKLGWAPNMRLKEGLRITYFWIKEQI 328
|
| >d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]} Length = 338 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-tyvelose-2-epimerase species: Salmonella typhi [TaxId: 90370]
Score = 162 bits (411), Expect = 9e-47
Identities = 66/342 (19%), Positives = 123/342 (35%), Gaps = 32/342 (9%)
Query: 121 VLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLN 180
+L+TG GF+GS+ + +G ++ DN + L V GD+
Sbjct: 3 LLITGGCGFLGSNLASFALSQGIDLIVFDNLSRKGA---TDNLHWLSSLGNFEFVHGDIR 59
Query: 181 DAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSI 240
+ +T+L HLA Q + ++ NP N+ G +NLLE + N +I
Sbjct: 60 NKNDVTRLITKYMPDSCFHLAGQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQYNSNCNI 119
Query: 241 VWASSSSVYGLNTQVPFSESHRTD---------------QPASLYAATKKAGEEIAHTYN 285
+++S++ VYG Q ++E+ S Y +K A ++ Y
Sbjct: 120 IYSSTNKVYGDLEQYKYNETETRYTCVDKPNGYDESTQLDFHSPYGCSKGAADQYMLDYA 179
Query: 286 HIYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQ--------GKTIDVYKTQDDREVAR 337
I+GL R ++YG + + K + + + R
Sbjct: 180 RIFGLNTVVFRHSSMYGGRQFATYDQGWVGWFCQKAVEIKNGINKPFTISG---NGKQVR 236
Query: 338 DFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHV 397
D + +D++ A + K RG + + + L +LE+ N +
Sbjct: 237 DVLHAEDMISLYFTALANVSKIRG--NAFNIGGTIVNSLSLLELFKLLEDYCNIDMRFTN 294
Query: 398 IRMPRNGDVPYTHANVSLAYKDFGYKPTTDLAAGLRKFVKWY 439
+ + R D A++ + P G++K W
Sbjct: 295 LPV-RESDQRVFVADIKKITNAIDWSPKVSAKDGVQKMYDWT 335
|
| >d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId: 5691]} Length = 383 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Trypanosoma brucei [TaxId: 5691]
Score = 147 bits (370), Expect = 2e-40
Identities = 65/393 (16%), Positives = 121/393 (30%), Gaps = 63/393 (16%)
Query: 117 NGMTVLVTGAAGFVGSHCSLAL-KKRGDGVLGLDNFNSYYDPSLKRARQKLLQKH----- 170
+ M VLV G AG++GSH AL + V+ +D+ + S ++ + +
Sbjct: 1 SHMRVLVCGGAGYIGSHFVRALLRDTNHSVVIVDSLVGTHGKSDHVETRENVARKLQQSD 60
Query: 171 ---------QVFIVEGDLNDAPLLTKL------FDVVPFTHVLHLAAQAGVRYAMQNPQS 215
+ GD+ + L + D V ++ +
Sbjct: 61 GPKPPWADRYAALEVGDVRNEDFLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKYYDNN 120
Query: 216 YVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKK 275
V LL C + S + ++ ++T + + P S Y +K
Sbjct: 121 VVGILRLLQAMLLHKCDKIIFSSSAAIFGNPTMGSVSTNAEPIDINAKKSPESPYGESKL 180
Query: 276 AGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFF---------------------- 313
E + YG+ LR+F G D+ +
Sbjct: 181 IAERMIRDCAEAYGIKGICLRYFNACGAHEDGDIGEHYQGSTHLIPIILGRVMSDIAPDQ 240
Query: 314 ---FTKDILQGKTIDVYKTQD---DREVARDFTYIDDVVKGCVGATGS---GGKKRGPAQ 364
+D K + ++ T D RD+ ++ D+ + A G
Sbjct: 241 RLTIHEDASTDKRMPIFGTDYPTPDGTCVRDYVHVCDLASAHILALDYVEKLGPNDKSKY 300
Query: 365 LRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRNGDVPYTHANVSLAYKDFGYKP 424
V+NLG + V ++ + R GD Y A A + G+KP
Sbjct: 301 FSVFNLGTSRGYSVREVIEVARKTTGHPIPVRECGR-REGDPAYLVAASDKAREVLGWKP 359
Query: 425 TTDLAAGLRK-FVKWYVSYYGIQPRVKKENGFS 456
D + + K+ ++ NG++
Sbjct: 360 KYDTLEAIMETSWKFQRTH---------PNGYA 383
|
| >d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]} Length = 356 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-glucose-4,6-dehydratase species: Yersinia pseudotuberculosis [TaxId: 633]
Score = 136 bits (342), Expect = 1e-36
Identities = 62/357 (17%), Positives = 107/357 (29%), Gaps = 21/357 (5%)
Query: 117 NGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVE 176
G V VTG GF G SL L+ G V G + AR +
Sbjct: 7 QGKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPTVPSLFETAR----VADGMQSEI 62
Query: 177 GDLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNP 236
GD+ D L + V H+AAQ VR + P ++N+ G V LLE + V
Sbjct: 63 GDIRDQNKLLESIREFQPEIVFHMAAQPLVRLSYSEPVETYSTNVMGTVYLLEAIRHVGG 122
Query: 237 QPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNH---------I 287
++V +S Y + + Y+ +K E + +Y +
Sbjct: 123 VKAVVNITSDKCYDNKEWIWGYRENEAMGGYDPYSNSKGCAELVTSSYRNSFFNPANYGQ 182
Query: 288 YGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVK 347
+G A+ +R V G + + + +
Sbjct: 183 HGTAVATVRAGNVIGGGDWALDRIVPDILRAFEQSQPVIIRNPHAIRPWQHVLEPLSGYL 242
Query: 348 GCVGATGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRNGDVP 407
+ G + N + +PV + A + +
Sbjct: 243 LLAQKLYTDGAEYAEGWNFGPNDADATPVKNIVEQMV--KYWGEGASWQLDGNAHPHEAH 300
Query: 408 YTHANVSLAYKDFGYKPTTDLAAGLRKFVKWYVSYYGIQPRVKKENGFSTTTSTIQH 464
Y + S A G+ P +L L V W+ ++ + + + I +
Sbjct: 301 YLKLDCSKAKMQLGWHPRWNLNTTLEYIVGWHKNWL------SGTDMHEYSITEINN 351
|
| >d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 393 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sulfolipid biosynthesis protein SQD1 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 114 bits (285), Expect = 1e-28
Identities = 70/400 (17%), Positives = 114/400 (28%), Gaps = 63/400 (15%)
Query: 118 GMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNF-NSYYDPSLKR-------------AR 163
G V+V G G+ G +L L K+ V +DN +D L +R
Sbjct: 1 GSRVMVIGGDGYCGWATALHLSKKNYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISR 60
Query: 164 QKLLQKHQVFIVEGDLNDAPLLTKLFD---VVPFTHVLHLAAQAGVRYAMQNPQSYVASN 220
K L + + GD+ D L + F H + +N
Sbjct: 61 WKALTGKSIELYVGDICDFEFLAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVYTQHNN 120
Query: 221 IAGFVNLLEVCKSVNPQPSIVWASSSS------------VYGLNTQVPFSESHRTDQPAS 268
+ G +N+L K + +V + + Q +S
Sbjct: 121 VIGTLNVLFAIKEFGEECHLVKLGTMGEYGTPNIDIEEGYITITHNGRTDTLPYPKQASS 180
Query: 269 LYAATKKAGEEIAHTYNHIYGLALTGLRFFTVYGP-----------------WGRPDMAY 311
Y +K +G+ T L VYG A
Sbjct: 181 FYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVKTDETEMHEELRNRLDYDAVFGTAL 240
Query: 312 FFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLG 371
F G + VY D V+ + + RV+N
Sbjct: 241 NRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVEIAIANPAK------AGEFRVFNQF 294
Query: 372 N--TSPVPVGRLVSILENLLNTKAKKHVIRMPRN-GDVPYTHANVSLAYKDFGYKPTTDL 428
S + LV+ + L KK + PR + Y +A + + G +P
Sbjct: 295 TEQFSVNELASLVTKAGSKLGLDVKKMTVPNPRVEAEEHYYNAKHTKL-MELGLEPHYLS 353
Query: 429 AAGLRKFVKWYVSYYG------IQPRVK-KENGFSTTTST 461
+ L + + V + I P V K+ G T + T
Sbjct: 354 DSLLDSLLNFAVQFKDRVDTKQIMPSVSWKKIGVKTKSMT 393
|
| >d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]} Length = 342 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Polymyxin resistance protein ArnA (PrmI) species: Escherichia coli [TaxId: 562]
Score = 108 bits (269), Expect = 9e-27
Identities = 52/353 (14%), Positives = 109/353 (30%), Gaps = 39/353 (11%)
Query: 119 MTVLVTGAAGFVGSHCSLALKKRGDG-VLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEG 177
M VL+ G GF+G+H + L + V GLD + L VEG
Sbjct: 1 MRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLNHPH--------FHFVEG 52
Query: 178 DLNDAPLLTKLFD---VVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSV 234
D++ + V V R ++ + N+ ++ K +
Sbjct: 53 DISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRI 112
Query: 235 NPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIYGLALT- 293
+ S + ++P +Y+ +K+ + + Y GL T
Sbjct: 113 IFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFTL 172
Query: 294 -------GLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVV 346
G R + A ++++G K D + R FT I D +
Sbjct: 173 FRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSP---IKLIDGGKQKRCFTDIRDGI 229
Query: 347 KGCVGATGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRM------ 400
+ + G + + + N + + L +L +H
Sbjct: 230 EALYRIIENAGNRCDGEIINIGN--PENEASIEELGEMLLASFEKHPLRHHFPPFAGFRV 287
Query: 401 --------PRNGDVPYTHANVSLAYKDFGYKPTTDLAAGLRKFVKWYVSYYGI 445
DV + ++ A++ ++P D+ + + + +++ +
Sbjct: 288 VESSSYYGKGYQDVEHRKPSIRNAHRCLDWEPKIDMQETIDETLDFFLRTVDL 340
|
| >d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]} Length = 342 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Aldehyde reductase II species: Sporobolomyces salmonicolor [TaxId: 5005]
Score = 95.3 bits (235), Expect = 3e-22
Identities = 50/347 (14%), Positives = 86/347 (24%), Gaps = 34/347 (9%)
Query: 112 TPRRPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQ 171
P G VLVTGA GFV SH L + G V G S KR K + +
Sbjct: 5 NAVLPEGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYPGRFE 64
Query: 172 VFIVEGDLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVC 231
+V D+ ++ + +Y + G +N L
Sbjct: 65 TAVV-EDMLKQGAYDEVIKGAAGVAHIASVVSFSNKYDEVVTPAIG-----GTLNALRAA 118
Query: 232 KSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQ-------------------PASLYAA 272
+ V SS+ + +YAA
Sbjct: 119 AATPSVKRFVLTSSTVSALIPKPNVEGIYLDEKSWNLESIDKAKTLPESDPQKSLWVYAA 178
Query: 273 TKKAGEEIA--HTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQ 330
+K E A + L + G P+ + ++ +V
Sbjct: 179 SKTEAELAAWKFMDENKPHFTLNAVLPNYTIGTIFDPETQSGSTSGWMMSLFNGEVSPAL 238
Query: 331 DDREVARDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLN 390
+ + D+ +G +R G +++ L
Sbjct: 239 ALM-PPQYYVSAVDIGLLHLGCLVLPQIERR------RVYGTAGTFDWNTVLATFRKLYP 291
Query: 391 TKAKKHVIRMPRNGDVPYTHANVSLAYKDFGYKPTTDLAAGLRKFVK 437
+K + A K G + ++ V
Sbjct: 292 SKTFPADFPDQGQDLSKFDTAPSLEILKSLGRPGWRSIEESIKDLVG 338
|
| >d1eq2a_ c.2.1.2 (A:) ADP-L-glycero-D-mannoheptose 6-epimerase {Escherichia coli [TaxId: 562]} Length = 307 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: ADP-L-glycero-D-mannoheptose 6-epimerase species: Escherichia coli [TaxId: 562]
Score = 93.6 bits (230), Expect = 7e-22
Identities = 48/323 (14%), Positives = 94/323 (29%), Gaps = 22/323 (6%)
Query: 121 VLVTGAAGFVGSHCSLALKKRGDG-VLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDL 179
++VTG AGF+GS+ AL +G +L +DN L+ + +
Sbjct: 2 IIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTK------FVNLVDLNIADY----M 51
Query: 180 NDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPS 239
+ L ++ F V + + + Y+ N + L P
Sbjct: 52 DKEDFLIQIMAGEEFGDVEAIFHEGACSSTTEWDGKYMMDNNYQYSKELLHYCLEREIPF 111
Query: 240 IVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIYGLALTGLRFFT 299
+ +S+++ G + S + Y+ +
Sbjct: 112 LYASSAATYGGRTSDFIESREYEKPLNVYGYSKFLFDEYVRQILPEANSQIVGFRYFNVY 171
Query: 300 VYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGATGSGGKK 359
+ MA F + + RDF Y+ DV +
Sbjct: 172 GPREGHKGSMASVAFHLNTQLNNGESPKLFEGSENFKRDFVYVGDVADVNLWF------- 224
Query: 360 RGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMP---RNGDVPYTHANVSLA 416
++NLG + K + I P + +T A+++
Sbjct: 225 LENGVSGIFNLGTGRAESFQAVADATLAYHK-KGQIEYIPFPDKLKGRYQAFTQADLTNL 283
Query: 417 YKDFGYKPTTDLAAGLRKFVKWY 439
KP +A G+ +++ W
Sbjct: 284 RAAGYDKPFKTVAEGVTEYMAWL 306
|
| >d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]} Length = 312 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Pinoresinol-lariciresinol reductase species: Giant arborvitae (Thuja plicata) [TaxId: 3316]
Score = 76.4 bits (186), Expect = 5e-16
Identities = 32/280 (11%), Positives = 62/280 (22%), Gaps = 35/280 (12%)
Query: 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGD 178
VL+ G G++G A G L + K ++ ++E
Sbjct: 4 SRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNID-KVQMLLYFKQLGAKLIEAS 62
Query: 179 LNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQP 238
L+D L V ++ +I + L+E K
Sbjct: 63 LDDHQRLVDALKQVDVVISAL-------------AGGVLSHHILEQLKLVEAIKEAGNIK 109
Query: 239 SIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIYGLALTGLRFF 298
+ + P H + + + + T +
Sbjct: 110 RFLPSE-------FGMDPDIMEHALQPGSITFIDKR-----KVRRAIEAASIPYTYVSSN 157
Query: 299 TVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGATGSGGK 358
G + I + DDV + +
Sbjct: 158 MFAGYFAGSLAQLDGHMMPPRDKVLIYGDGNVK-----GIWVDEDDVGTYTIKSIDDPQT 212
Query: 359 KRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVI 398
+Y + + ++ I E L K I
Sbjct: 213 LNK----TMYIRPPMNILSQKEVIQIWERLSEQNLDKIYI 248
|
| >d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 252 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein At5g02240 (T7H20 290) species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 74.1 bits (180), Expect = 1e-15
Identities = 36/278 (12%), Positives = 66/278 (23%), Gaps = 33/278 (11%)
Query: 117 NGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVE 176
N TVLVTGA+G G LK+ D + S +
Sbjct: 2 NLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKIGGEADVFIGDITDADS 61
Query: 177 GDLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNP 236
+ ++ L + +P
Sbjct: 62 INPAFQ----------GIDALVILTSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIG 111
Query: 237 QPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIA-HTYNHIYGLALTGL 295
Q + + A+ + V D P + + Y G T +
Sbjct: 112 QKNQIDAAKVAGVKHIVVVGSMGGTNPDHPLNKLGNGNILVWKRKAEQYLADSGTPYTII 171
Query: 296 RFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGATGS 355
R + G ++LQ DV + C+ A
Sbjct: 172 RAGGLLDKEGGVRELLVGKDDELLQTD--------------TKTVPRADVAEVCIQALLF 217
Query: 356 GGKKRGPAQLRVYNLGN---TSPVPVGRLVSILENLLN 390
K + ++LG+ + P ++ + +
Sbjct: 218 EEAKN-----KAFDLGSKPEGTSTPTKDFKALFSQVTS 250
|
| >d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]} Length = 307 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Phenylcoumaran benzylic ether reductase species: Loblolly pine (Pinus taeda) [TaxId: 3352]
Score = 74.4 bits (181), Expect = 3e-15
Identities = 44/347 (12%), Positives = 83/347 (23%), Gaps = 72/347 (20%)
Query: 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGD 178
+L+ GA G++G H + A G L ++ S K + + IV G
Sbjct: 4 SRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFKASGANIVHGS 63
Query: 179 LNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQP 238
++D V +V + + G A
Sbjct: 64 IDDHA-----SLVEAVKNVDVVISTVGSLQIESQVNIIKAIKEV---------------- 102
Query: 239 SIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIYGLALTGLRFF 298
V S +G + + G+ T +
Sbjct: 103 GTVKRFFPSEFGNDVDNVHAVEPAKSVFEVKA---------KVRRAIEAEGIPYTYVSSN 153
Query: 299 TVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGATGSGGK 358
G + R + + + F +D+ + A
Sbjct: 154 CFAGYFLRSLAQAGLTAPPRDKVVILGDGNAR------VVFVKEEDIGTFTIKAVDDPRT 207
Query: 359 KRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMP----------------- 401
+Y + + + LV++ E ++ +K +
Sbjct: 208 LNK----TLYLRLPANTLSLNELVALWEKKIDKTLEKAYVPEEEVLKLIADTPFPANISI 263
Query: 402 ------------RNGDVPYTHANVSLAYKDFGYKPTTDLAAGLRKFV 436
N ++ S Y D K TT + L FV
Sbjct: 264 AISHSIFVKGDQTNFEIGPAGVEASQLYPDV--KYTT-VDEYLSNFV 307
|
| >d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: DTDP-4-dehydrorhamnose reductase RfbD species: Clostridium acetobutylicum [TaxId: 1488]
Score = 73.7 bits (179), Expect = 3e-15
Identities = 44/322 (13%), Positives = 84/322 (26%), Gaps = 45/322 (13%)
Query: 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGD 178
M +L+TGA G +G LK + V+ D + + D
Sbjct: 2 MKILITGANGQLGREIQKQLKGKNVEVIPTD------------------------VQDLD 37
Query: 179 LNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQP 238
+ + + K F+ V++ AA V + N G N + +
Sbjct: 38 ITNVLAVNKFFNEKKPNVVINCAAHTAVDKCEEQYDLAYKINAIGPKN--LAAAAYSVGA 95
Query: 239 SIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIYGLALTGLRFF 298
IV S+ V+ + P +E + ++ + + +R
Sbjct: 96 EIVQISTDYVFDGEAKEPITEFDEVNPQSAYGKTKLEGEN-----FVKALNPKYYIVRTA 150
Query: 299 TVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGATGSGGK 358
+YG KT D+ +V D
Sbjct: 151 WLYGDGNNFVKTMINL------------GKTHDELKVVHDQVGTPTSTVDLARVVLKVID 198
Query: 359 KRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRNGDVP-YTHANVSLAY 417
++ G S + L + PR P Y+ +
Sbjct: 199 EKNYGTFHCTCKGICSWYDFAVEIFRLTGIDVKVTPCTTEEFPRPAKRPKYSVLRNYMLE 258
Query: 418 KDFGYKPTTDLAAGLRKFVKWY 439
G + L++++
Sbjct: 259 LTTGDIT-REWKESLKEYIDLL 279
|
| >d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica serovar typhimurium [TaxId: 90371]} Length = 298 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) species: Salmonella enterica serovar typhimurium [TaxId: 90371]
Score = 65.3 bits (157), Expect = 2e-12
Identities = 43/330 (13%), Positives = 93/330 (28%), Gaps = 42/330 (12%)
Query: 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGD 178
M +L+ G G VG +L G+ ++ LD + + GD
Sbjct: 1 MNILLFGKTGQVGWELQRSLAPVGN-LIALDVHSKEF--------------------CGD 39
Query: 179 LNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQP 238
++ + + + +++ AA V A P+ N +
Sbjct: 40 FSNPKGVAETVRKLRPDVIVNAAAHTAVDKAESEPELAQLLNA--TSVEAIAKAANETGA 97
Query: 239 SIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIYGLALTGLRFF 298
+V S+ V+ +P+ E P ++Y TK AGE+ + + T +
Sbjct: 98 WVVHYSTDYVFPGTGDIPWQE-TDATSPLNVYGKTKLAGEKALQDNCPKHLIFRTSWVYA 156
Query: 299 TVYGPWGRPDMAYFFFTKDIL-QGKTIDVYKTQDDREVARDFTYIDDVVKGCVG-----A 352
+ + + + + + + K V
Sbjct: 157 GKGNNFAKTMLRLAKERQTLSVINDQYGAPTGAELLADCTAHAIRVALNKPEVAGLYHLV 216
Query: 353 TGSGGKKRGPAQLRVYNLGNTS-PVPVGRLVSILENLLNTKAKKHVIRMPRNGDVPYTHA 411
G A L + + L ++ + T A + P +
Sbjct: 217 AGGTTTWHDYAALVFDEARKAGITLALTELNAVPTSAYPTPASR-----PG-----NSRL 266
Query: 412 NVSLAYKDFGYKPTTDLAAGLRKFVKWYVS 441
N ++F G+++ + +
Sbjct: 267 NTEKFQRNFDLIL-PQWELGVKRMLTEMFT 295
|
| >d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 205 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Biliverdin IX beta reductase species: Human (Homo sapiens) [TaxId: 9606]
Score = 53.5 bits (127), Expect = 7e-09
Identities = 36/217 (16%), Positives = 64/217 (29%), Gaps = 28/217 (12%)
Query: 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGD 178
+ + GA G G + G V L +S + + D
Sbjct: 4 KKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPS---EGPRPAHVVVGDVLQAAD 60
Query: 179 LNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQP 238
++ V+ L N S G N++ K+
Sbjct: 61 VDKTV--------AGQDAVIVLLGTR-------NDLSPTTVMSEGARNIVAAMKAHGVDK 105
Query: 239 SIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTY-NHIYGLALTGLRF 297
+V +S+ + T+VP TD ++ +++G + HI LTG
Sbjct: 106 -VVACTSAFLLWDPTKVPPRLQAVTDDHIRMHKVLRESGLKYVAVMPPHIGDQPLTGAYT 164
Query: 298 FTVYGPWG-----RPDMAYFFF---TKDILQGKTIDV 326
T+ G + D+ +F T D G +
Sbjct: 165 VTLDGRGPSRVISKHDLGHFMLRCLTTDEYDGHSTYP 201
|
| >d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]} Length = 350 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Negative transcriptional regulator NmrA species: Aspergillus nidulans [TaxId: 162425]
Score = 52.7 bits (125), Expect = 4e-08
Identities = 15/84 (17%), Positives = 27/84 (32%), Gaps = 7/84 (8%)
Query: 120 TVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDL 179
T+ V GA G G+ G V + ++L V + +G L
Sbjct: 5 TIAVVGATGRQGASLIRVAAAVGHHVRAQVH-----SLK-GLIAEELQAIPNVTLFQGPL 58
Query: 180 NDAP-LLTKLFDVVPFTHVLHLAA 202
+ L+ LF+ + +
Sbjct: 59 LNNVPLMDTLFEGAHLAFINTTSQ 82
|
| >d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 15-hydroxyprostaglandin dehydrogenase, PGDH species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.5 bits (110), Expect = 3e-06
Identities = 39/191 (20%), Positives = 66/191 (34%), Gaps = 20/191 (10%)
Query: 117 NGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVE 176
NG LVTGAA +G + AL +G V +D +N K A + + + ++
Sbjct: 2 NGKVALVTGAAQGIGRAFAEALLLKGAKVALVD-WNLEAGVQCKAALHEQFEPQKTLFIQ 60
Query: 177 GDLNDAPLLTKLFDVVP--FTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVC--- 231
D+ D L F V F + L AGV +N + + N+ ++ +
Sbjct: 61 CDVADQQQLRDTFRKVVDHFGRLDILVNNAGVNN-EKNWEKTLQINLVSVISGTYLGLDY 119
Query: 232 --KSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIYG 289
K + I+ SS +Y A+K +
Sbjct: 120 MSKQNGGEGGIIINMSSLA-----------GLMPVAQQPVYCASKHGIVGFTRSAALAAN 168
Query: 290 LALTGLRFFTV 300
L +G+R +
Sbjct: 169 LMNSGVRLNAI 179
|
| >d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: R-specific alcohol dehydrogenase species: Lactobacillus brevis [TaxId: 1580]
Score = 44.6 bits (105), Expect = 9e-06
Identities = 31/208 (14%), Positives = 71/208 (34%), Gaps = 13/208 (6%)
Query: 115 RPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFI 174
R +G ++TG +G + + G V+ + ++A + + Q+
Sbjct: 3 RLDGKVAIITGGTLGIGLAIATKFVEEGAKVMITGR----HSDVGEKAAKSVGTPDQIQF 58
Query: 175 VEGDLNDAPLLTKLFDVV-----PFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLE 229
+ D +D TKLFD P + +++ A A + + + +A ++ +
Sbjct: 59 FQHDSSDEDGWTKLFDATEKAFGPVSTLVNNAGIAVNKSVEETTTAEWRKLLAVNLDGVF 118
Query: 230 VCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIYG 289
+ I + + + E D Y A+K A ++ +
Sbjct: 119 FGT----RLGIQRMKNKGLGASIINMSSIEGFVGDPSLGAYNASKGAVRIMSKSAALDCA 174
Query: 290 LALTGLRFFTVYGPWGRPDMAYFFFTKD 317
L +R TV+ + + + +
Sbjct: 175 LKDYDVRVNTVHPGYIKTPLVDDLPGAE 202
|
| >d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]} Length = 272 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein R05D8.7 species: Caenorhabditis elegans [TaxId: 6239]
Score = 44.2 bits (104), Expect = 1e-05
Identities = 37/239 (15%), Positives = 76/239 (31%), Gaps = 4/239 (1%)
Query: 115 RPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFI 174
R + TV++TG++ +G ++ + G V + + + + + + + QV
Sbjct: 2 RFSNKTVIITGSSNGIGRTTAILFAQEGANVTITGRSSERLEETRQIILKSGVSEKQVNS 61
Query: 175 VEGDLNDAPLLTKLFDVVP--FTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVC- 231
V D+ ++ + F + L AG + I + L++
Sbjct: 62 VVADVTTEDGQDQIINSTLKQFGKIDVLVNNAGAAIPDAFGTTGTDQGIDIYHKTLKLNL 121
Query: 232 KSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIYGLA 291
++V V + G V + QP LY A KA +T + LA
Sbjct: 122 QAVIEMTKKVKPHLVASKGEIVNVSSIVAGPQAQPDFLYYAIAKAA-LDQYTRSTAIDLA 180
Query: 292 LTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCV 350
G+R +V D K + + + + + +
Sbjct: 181 KFGIRVNSVSPGMVETGFTNAMGMPDQASQKFYNFMASHKECIPIGAAGKPEHIANIIL 239
|
| >d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} Length = 260 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Xylitol dehydrogenase species: Gluconobacter oxydans [TaxId: 442]
Score = 43.6 bits (102), Expect = 2e-05
Identities = 41/228 (17%), Positives = 75/228 (32%), Gaps = 10/228 (4%)
Query: 114 RRPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKH-QV 172
++ NG LVTGA G +G +L L + G + LD +L++A + +K +
Sbjct: 1 KKFNGKVCLVTGAGGNIGLATALRLAEEGTAIALLD----MNREALEKAEASVREKGVEA 56
Query: 173 FIVEGDLNDAPLLTKLF-DVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVC 231
D+ + VV + P S+ V + V
Sbjct: 57 RSYVCDVTSEEAVIGTVDSVVRDFGKIDFLFNNAGYQGAFAPVQDYPSDDFARVLTINVT 116
Query: 232 KSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIYGLA 291
+ + ++ + YG + + Y +K A + T LA
Sbjct: 117 GAFHVLKAVSRQMITQNYGRIVNTASMAGVKGPPNMAAYGTSKGAIIALTETAAL--DLA 174
Query: 292 LTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDF 339
+R + + P + + LQ K Y + D + VA+
Sbjct: 175 PYNIRVNAISPGYMGPGFMWERQVE--LQAKVGSQYFSTDPKVVAQQM 220
|
| >d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]} Length = 274 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein F25D1.5 species: Caenorhabditis elegans [TaxId: 6239]
Score = 42.7 bits (100), Expect = 5e-05
Identities = 29/240 (12%), Positives = 71/240 (29%), Gaps = 8/240 (3%)
Query: 115 RPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFI 174
R +G +V++TG++ +G ++ K G V + + ++ + + ++
Sbjct: 1 RFSGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAGVPAEKINA 60
Query: 175 VEGDLNDAPLLTKLFDVVP--FTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEV-C 231
V D+ +A + + F + L A + + + + + ++
Sbjct: 61 VVADVTEASGQDDIINTTLAKFGKIDILVNNA--GANLADGTANTDQPVELYQKTFKLNF 118
Query: 232 KSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPA-SLYAATKKAGEEIAHTYNHIYGL 290
++V G V + YA K A +T L
Sbjct: 119 QAVIEMTQKTKEHLIKTKGEIVNVSSIVAGPQAHSGYPYYACAKAAL--DQYTRCTAIDL 176
Query: 291 ALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCV 350
G+R +V + K ++ + +++ V
Sbjct: 177 IQHGVRVNSVSPGAVATGFMGAMGLPETASDKLYSFIGSRKECIPVGHCGKPEEIANIIV 236
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} Length = 257 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.3 bits (94), Expect = 2e-04
Identities = 41/243 (16%), Positives = 75/243 (30%), Gaps = 31/243 (12%)
Query: 115 RPN-----GMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQK 169
RP LVTGA+G +G+ + AL ++G V+G + L +
Sbjct: 2 RPGMERWRDRLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIE-ELAAECKSAGYP 60
Query: 170 HQVFIVEGDLNDAPLLTKLFDVVP--FTHVLHLAAQAGV-------RYAMQNPQSYVASN 220
+ DL++ + +F + + V AG+ + + N
Sbjct: 61 GTLIPYRCDLSNEEDILSMFSAIRSQHSGVDICINNAGLARPDTLLSGSTSGWKDMFNVN 120
Query: 221 IAGFVNLLEVC-----KSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKK 275
+ + I+ +S S + + +P Y+ATK
Sbjct: 121 VLALSICTREAYQSMKERNVDDGHIININSMSGHRV---LPL-------SVTHFYSATKY 170
Query: 276 AGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQ-GKTIDVYKTQDDRE 334
A + A T +R + A+ KD + T + K +
Sbjct: 171 AVTALTEGLRQELREAQTHIRATCISPGVVETQFAFKLHDKDPEKAAATYEQMKCLKPED 230
Query: 335 VAR 337
VA
Sbjct: 231 VAE 233
|
| >d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 264 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase (5l265) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 40.3 bits (94), Expect = 3e-04
Identities = 33/240 (13%), Positives = 68/240 (28%), Gaps = 6/240 (2%)
Query: 115 RPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFI 174
R ++TG++ +G ++ + G V + + ++ + + V
Sbjct: 2 RFAEKVAIITGSSNGIGRATAVLFAREGAKVTITGRHAERLEETRQQILAAGVSEQNVNS 61
Query: 175 VEGDLNDAPLLTKLFDVVP--FTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEV-C 231
V D+ ++ F + L AG ++ A +I + L +
Sbjct: 62 VVADVTTDAGQDEILSTTLGKFGKLDILVNNAGAAIPDSQSKTGTAQSIESYDATLNLNL 121
Query: 232 KSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQP-ASLYAATKKAGEEIAHTYNHIYGL 290
+SV SS G + S P Y+ K A ++ L
Sbjct: 122 RSVIALTKKAVPHLSSTKGEIVNISSIASGLHATPDFPYYSIAKAAIDQYTRNTAI--DL 179
Query: 291 ALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCV 350
G+R ++ + K T + A D+ +
Sbjct: 180 IQHGIRVNSISPGLVATGFGSAMGMPEETSKKFYSTMATMKECVPAGVMGQPQDIAEVIA 239
|
| >d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Mouse (Mus musculus) [TaxId: 10090]
Score = 39.2 bits (91), Expect = 5e-04
Identities = 39/193 (20%), Positives = 59/193 (30%), Gaps = 12/193 (6%)
Query: 118 GMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEG 177
G+ LVTGA +G AL G V+ + + + + V
Sbjct: 5 GLRALVTGAGKGIGRDTVKALHASGAKVVAVTR-------TNSDLVSLAKECPGIEPVCV 57
Query: 178 DLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQ 237
DL D K + +L A + + A + + VNL V + Q
Sbjct: 58 DLGDWDATEKALGGIGPVDLLVNNAALVIMQPFLE-VTKEAFDRSFSVNLRSVFQVS--Q 114
Query: 238 PSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIYGLALTGLRF 297
+ V G V +H T Y++TK A T L +R
Sbjct: 115 MVARDMINRGVPGSIVNVSSMVAHVTFPNLITYSSTKGA--MTMLTKAMAMELGPHKIRV 172
Query: 298 FTVYGPWGRPDMA 310
+V DM
Sbjct: 173 NSVNPTVVLTDMG 185
|
| >d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]} Length = 212 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein PA4017 species: Pseudomonas aeruginosa [TaxId: 287]
Score = 39.0 bits (89), Expect = 5e-04
Identities = 10/34 (29%), Positives = 13/34 (38%), Gaps = 5/34 (14%)
Query: 112 TPRRPNGMTVLVTGAAGFVGSHCSLALKKRGDGV 145
TP+R VL+ GA G G H +
Sbjct: 1 TPKR-----VLLAGATGLTGEHLLDRILSEPTLA 29
|
| >d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Gluconate 5-dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Score = 39.2 bits (91), Expect = 5e-04
Identities = 34/198 (17%), Positives = 60/198 (30%), Gaps = 11/198 (5%)
Query: 117 NGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKH--QVFI 174
G LVTG + +G + L + G V+ A QKL +K+ +
Sbjct: 4 RGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASR----NLEEASEAAQKLTEKYGVETMA 59
Query: 175 VEGDLNDAPLLTKLFDVVP--FTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCK 232
D+++ + KL + V F + + AG+ ++P + V + +
Sbjct: 60 FRCDVSNYEEVKKLLEAVKEKFGKLDTVVNAAGI--NRRHPAEEFPLDEFRQVIEVNLFG 117
Query: 233 SVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIYGLAL 292
+ S + P A K G + T
Sbjct: 118 TYYVCREAFSLLRESDNPSIINIGSLTVEEVTMPNISAYAASKGG-VASLTKALAKEWGR 176
Query: 293 TGLRFFTVYGPWGRPDMA 310
G+R + W R M
Sbjct: 177 YGIRVNVIAPGWYRTKMT 194
|
| >d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]} Length = 259 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Erythromycin synthase, eryAI, 1st ketoreductase module species: Saccharopolyspora erythraea [TaxId: 1836]
Score = 39.2 bits (90), Expect = 5e-04
Identities = 35/205 (17%), Positives = 60/205 (29%), Gaps = 28/205 (13%)
Query: 115 RPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFI 174
+P G TVLVTG G VG + L +RG L L + + +L
Sbjct: 7 KPTG-TVLVTGGTGGVGGQIARWLARRGAPHLLLVSRSGPDADGAGELVAELEALGARTT 65
Query: 175 VEGDLND---------APLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFV 225
V + + F L + + + + G
Sbjct: 66 VAACDVTDRESVRELLGGIGDDVPLSAVFHAAATLDDGTVDTLTGERIERASRAKVLGAR 125
Query: 226 NLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYN 285
NL E+ + ++ ++++S +S +G YA + +A
Sbjct: 126 NLHELTRELDLTAFVLFSSFASAFGAPGLGG-------------YAPGNAYLDGLAQQRR 172
Query: 286 HIYGLALTGLRFFTVYGPWGRPDMA 310
A +G W MA
Sbjct: 173 SDGLPATA-----VAWGTWAGSGMA 192
|
| >d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: TAT-interacting protein TIP30 species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.0 bits (89), Expect = 6e-04
Identities = 6/27 (22%), Positives = 12/27 (44%)
Query: 119 MTVLVTGAAGFVGSHCSLALKKRGDGV 145
+V + GA+G G + ++G
Sbjct: 15 KSVFILGASGETGRVLLKEILEQGLFS 41
|
| >d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} Length = 268 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Rhizome secoisolariciresinol dehydrogenase species: Mayapple (Podophyllum peltatum) [TaxId: 35933]
Score = 38.1 bits (88), Expect = 0.001
Identities = 14/76 (18%), Positives = 26/76 (34%), Gaps = 4/76 (5%)
Query: 115 RPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFI 174
R ++TG AG +G + + G V+ D D ++ + +
Sbjct: 3 RLQDKVAIITGGAGGIGETTAKLFVRYGAKVVIAD----IADDHGQKVCNNIGSPDVISF 58
Query: 175 VEGDLNDAPLLTKLFD 190
V D+ + L D
Sbjct: 59 VHCDVTKDEDVRNLVD 74
|
| >d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]} Length = 294 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR) species: Human (Homo sapiens), [TaxId: 9606]
Score = 38.2 bits (88), Expect = 0.002
Identities = 21/167 (12%), Positives = 48/167 (28%), Gaps = 6/167 (3%)
Query: 113 PRRPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKH-- 170
P G +TG +G + L G + LK +++ +
Sbjct: 20 PNSFQGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASR----KMDVLKATAEQISSQTGN 75
Query: 171 QVFIVEGDLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEV 230
+V ++ D+ D ++ + +P ++ N + + +
Sbjct: 76 KVHAIQCDVRDPDMVQNTVSELIKVAGHPNIVINNAAGNFISPTERLSPNAWKTITDIVL 135
Query: 231 CKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAG 277
+ I + G + T + +A+ KAG
Sbjct: 136 NGTAFVTLEIGKQLIKAQKGAAFLSITTIYAETGSGFVVPSASAKAG 182
|
| >d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]} Length = 260 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: D(-)-3-hydroxybutyrate dehydrogenase species: Pseudomonas fragi [TaxId: 296]
Score = 37.5 bits (86), Expect = 0.002
Identities = 27/196 (13%), Positives = 56/196 (28%), Gaps = 7/196 (3%)
Query: 117 NGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKH--QVFI 174
G +VTG+ +G + AL +G ++ ++ +++ R L +H +V
Sbjct: 3 KGKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDA---AEIEKVRAGLAAQHGVKVLY 59
Query: 175 VEGDLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSV 234
DL+ + L D + + L +
Sbjct: 60 DGADLSKGEAVRGLVDNAVRQMGRIDILVNNAGIQHTALIEDFPTEKWDAILALNLSAVF 119
Query: 235 NPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIYGLALTG 294
+ + + +G + + S Y A K + T A G
Sbjct: 120 HGTAAALPHMKKQGFGRIINIASAHGLVASANKSAYVAAKHG--VVGFTKVTALETAGQG 177
Query: 295 LRFFTVYGPWGRPDMA 310
+ + W R +
Sbjct: 178 ITANAICPGWVRTPLV 193
|
| >d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]} Length = 175 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]
Score = 36.5 bits (84), Expect = 0.003
Identities = 11/38 (28%), Positives = 16/38 (42%), Gaps = 2/38 (5%)
Query: 112 TPRRPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLD 149
T + + V+GAAG + +H L V G D
Sbjct: 18 TKSWKKLVNIAVSGAAGMISNHLLFKLASG--EVFGQD 53
|
| >d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 236 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 36.7 bits (84), Expect = 0.003
Identities = 23/177 (12%), Positives = 52/177 (29%), Gaps = 18/177 (10%)
Query: 118 GMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEG 177
VLV G G +GS C A + R V +D + + + +++ F +
Sbjct: 2 ARRVLVYGGRGALGSRCVQAFRARNWWVASID-----VVENEEASASVIVKMTDSFTEQA 56
Query: 178 DLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNP-----QSYVASNIAGFVNL--LEV 230
D A + KL +L +A A +I L
Sbjct: 57 DQVTA-EVGKLLGDQKVDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSHLAT 115
Query: 231 CKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHI 287
+ + +++ G + + + +++ + + + +
Sbjct: 116 KHLKEGGLLTLAGAKAALDGTPGMIGYGMAK-----GAVHQLCQSLAGKNSGMPSGA 167
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 469 | |||
| d1db3a_ | 357 | GDP-mannose 4,6-dehydratase {Escherichia coli [Tax | 100.0 | |
| d1r6da_ | 322 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces | 100.0 | |
| d1kewa_ | 361 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus | 100.0 | |
| d2b69a1 | 312 | UDP-glucuronate decarboxylase 1 {Human (Homo sapie | 100.0 | |
| d1udca_ | 338 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 100.0 | |
| d1sb8a_ | 341 | UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo | 100.0 | |
| d1rpna_ | 321 | GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos | 100.0 | |
| d1oc2a_ | 346 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus | 100.0 | |
| d2blla1 | 342 | Polymyxin resistance protein ArnA (PrmI) {Escheric | 100.0 | |
| d1ek6a_ | 346 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 100.0 | |
| d1t2aa_ | 347 | GDP-mannose 4,6-dehydratase {Human (Homo sapiens) | 100.0 | |
| d2c5aa1 | 363 | GDP-mannose-3', 5'-epimerase {Thale cress (Arabido | 100.0 | |
| d1z45a2 | 347 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 100.0 | |
| d1i24a_ | 393 | Sulfolipid biosynthesis protein SQD1 {Thale cress | 100.0 | |
| d1n7ha_ | 339 | GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop | 100.0 | |
| d1gy8a_ | 383 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 100.0 | |
| d1e6ua_ | 315 | GDP-4-keto-6-deoxy-d-mannose epimerase/reductase ( | 100.0 | |
| d1orra_ | 338 | CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: | 100.0 | |
| d1rkxa_ | 356 | CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc | 100.0 | |
| d1vl0a_ | 281 | DTDP-4-dehydrorhamnose reductase RfbD {Clostridium | 100.0 | |
| d1y1pa1 | 342 | Aldehyde reductase II {Sporobolomyces salmonicolor | 100.0 | |
| d1eq2a_ | 307 | ADP-L-glycero-D-mannoheptose 6-epimerase {Escheric | 100.0 | |
| d1n2sa_ | 298 | dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {S | 100.0 | |
| d1qyca_ | 307 | Phenylcoumaran benzylic ether reductase {Loblolly | 99.96 | |
| d1qyda_ | 312 | Pinoresinol-lariciresinol reductase {Giant arborvi | 99.96 | |
| d1hdoa_ | 205 | Biliverdin IX beta reductase {Human (Homo sapiens) | 99.94 | |
| d2bkaa1 | 232 | TAT-interacting protein TIP30 {Human (Homo sapiens | 99.94 | |
| d2q46a1 | 252 | Hypothetical protein At5g02240 (T7H20_290) {Thale | 99.92 | |
| d1xgka_ | 350 | Negative transcriptional regulator NmrA {Aspergill | 99.92 | |
| d2a35a1 | 212 | Hypothetical protein PA4017 {Pseudomonas aeruginos | 99.9 | |
| d1pr9a_ | 244 | Carbonyl reductase {Human (Homo sapiens) [TaxId: 9 | 99.87 | |
| d1cyda_ | 242 | Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1 | 99.87 | |
| d1iy8a_ | 258 | Levodione reductase {Corynebacterium aquaticum [Ta | 99.87 | |
| d2ew8a1 | 247 | (s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb | 99.87 | |
| d1geea_ | 261 | Glucose dehydrogenase {Bacillus megaterium [TaxId: | 99.87 | |
| d1nffa_ | 244 | Putative oxidoreductase Rv2002 {Mycobacterium tube | 99.86 | |
| d1vl8a_ | 251 | Gluconate 5-dehydrogenase {Thermotoga maritima [Ta | 99.86 | |
| d2d1ya1 | 248 | Hypothetical protein TTHA0369 {Thermus thermophilu | 99.86 | |
| d1q7ba_ | 243 | beta-keto acyl carrier protein reductase {Escheric | 99.86 | |
| d1ulsa_ | 242 | beta-keto acyl carrier protein reductase {Thermus | 99.86 | |
| d1uzma1 | 237 | beta-keto acyl carrier protein reductase {Mycobact | 99.86 | |
| d2c07a1 | 251 | beta-keto acyl carrier protein reductase {Malaria | 99.86 | |
| d1x1ta1 | 260 | D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas | 99.86 | |
| d1k2wa_ | 256 | Sorbitol dehydrogenase {Rhodobacter sphaeroides [T | 99.86 | |
| d1fmca_ | 255 | 7-alpha-hydroxysteroid dehydrogenase {Escherichia | 99.86 | |
| d1zk4a1 | 251 | R-specific alcohol dehydrogenase {Lactobacillus br | 99.86 | |
| d1ydea1 | 250 | Retinal dehydrogenase/reductase 3 {Human (Homo sap | 99.85 | |
| d2bgka1 | 268 | Rhizome secoisolariciresinol dehydrogenase {Mayapp | 99.85 | |
| d2ae2a_ | 259 | Tropinone reductase {Jimsonweed (Datura stramonium | 99.85 | |
| d1zema1 | 260 | Xylitol dehydrogenase {Gluconobacter oxydans [TaxI | 99.85 | |
| d2gdza1 | 254 | 15-hydroxyprostaglandin dehydrogenase, PGDH {Human | 99.85 | |
| d1hdca_ | 254 | 3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre | 99.85 | |
| d2rhca1 | 257 | beta-keto acyl carrier protein reductase {Streptom | 99.85 | |
| d1xq1a_ | 259 | Tropinone reductase {Thale cress (Arabidopsis thal | 99.85 | |
| d1gega_ | 255 | meso-2,3-butanediol dehydrogenase {Klebsiella pneu | 99.84 | |
| d1ulua_ | 256 | Enoyl-ACP reductase {Thermus thermophilus [TaxId: | 99.84 | |
| d1ae1a_ | 258 | Tropinone reductase {Jimsonweed (Datura stramonium | 99.84 | |
| d1spxa_ | 264 | Glucose dehydrogenase (5l265) {Nematode (Caenorhab | 99.83 | |
| d1edoa_ | 244 | beta-keto acyl carrier protein reductase {Oil seed | 99.83 | |
| d1xkqa_ | 272 | Hypothetical protein R05D8.7 {Caenorhabditis elega | 99.83 | |
| d1hxha_ | 253 | 3beta/17beta hydroxysteroid dehydrogenase {Comamon | 99.83 | |
| d1sbya1 | 254 | Drosophila alcohol dehydrogenase {Fly (Drosophila | 99.83 | |
| d1xhla_ | 274 | Hypothetical protein F25D1.5 {Caenorhabditis elega | 99.83 | |
| d1h5qa_ | 260 | Mannitol dehydrogenase {Mushroom (Agaricus bisporu | 99.82 | |
| d1yb1a_ | 244 | 17-beta-hydroxysteroid dehydrogenase type XI {Huma | 99.82 | |
| d2bd0a1 | 240 | Bacterial sepiapterin reductase {Chlorobium tepidu | 99.82 | |
| d1yxma1 | 297 | Peroxisomal trans 2-enoyl CoA reductase {Human (Ho | 99.82 | |
| d2a4ka1 | 241 | beta-keto acyl carrier protein reductase {Thermus | 99.81 | |
| d1xg5a_ | 257 | Putative dehydrogenase ARPG836 (MGC4172) {Human (H | 99.81 | |
| d1ja9a_ | 259 | 1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl | 99.81 | |
| d1gz6a_ | 302 | (3R)-hydroxyacyl-CoA dehydrogenase domain of estra | 99.8 | |
| d1o5ia_ | 234 | beta-keto acyl carrier protein reductase {Thermoto | 99.8 | |
| d1g0oa_ | 272 | 1,3,8-trihydroxynaphtalene reductase (THNR, naphto | 99.79 | |
| d2ag5a1 | 245 | Dehydrogenase/reductase SDR family member 6, DHRS6 | 99.79 | |
| d1bdba_ | 276 | Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps | 99.79 | |
| d2fr1a1 | 259 | Erythromycin synthase, eryAI, 1st ketoreductase mo | 99.79 | |
| d1jtva_ | 285 | Human estrogenic 17beta-hydroxysteroid dehydrogena | 99.78 | |
| d1oaaa_ | 259 | Sepiapterin reductase {Mouse (Mus musculus) [TaxId | 99.78 | |
| d1w6ua_ | 294 | 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H | 99.78 | |
| d1zmta1 | 252 | Halohydrin dehalogenase HheC {Agrobacterium tumefa | 99.77 | |
| d1snya_ | 248 | Carbonyl reductase sniffer {Fruit fly (Drosophila | 99.76 | |
| d2o23a1 | 248 | Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho | 99.76 | |
| d1qsga_ | 258 | Enoyl-ACP reductase {Escherichia coli [TaxId: 562] | 99.74 | |
| d1yo6a1 | 250 | Putative carbonyl reductase sniffer {Caenorhabditi | 99.74 | |
| d1wmaa1 | 275 | Carbonyl reductase/20beta-hydroxysteroid dehydroge | 99.73 | |
| d1dhra_ | 236 | Dihydropteridin reductase (pteridine reductase) {R | 99.72 | |
| d2pd4a1 | 274 | Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2 | 99.7 | |
| d1ooea_ | 235 | Dihydropteridin reductase (pteridine reductase) {N | 99.69 | |
| d1e7wa_ | 284 | Dihydropteridin reductase (pteridine reductase) {L | 99.68 | |
| d1xu9a_ | 269 | 11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom | 99.67 | |
| d1uaya_ | 241 | Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t | 99.66 | |
| d2h7ma1 | 268 | Enoyl-ACP reductase {Mycobacterium tuberculosis, T | 99.62 | |
| d1mxha_ | 266 | Dihydropteridin reductase (pteridine reductase) {T | 99.61 | |
| d1d7oa_ | 297 | Enoyl-ACP reductase {Oil seed rape (Brassica napus | 99.58 | |
| d1uh5a_ | 329 | Enoyl-ACP reductase {Malaria parasite (Plasmodium | 99.56 | |
| d1fjha_ | 257 | 3-alpha-hydroxysteroid dehydrogenase {Comamonas te | 99.46 | |
| d1luaa1 | 191 | Methylene-tetrahydromethanopterin dehydrogenase {M | 99.16 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 98.33 | |
| d1mlda1 | 144 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 98.24 | |
| d1ez4a1 | 146 | Lactate dehydrogenase {Lactobacillus pentosus [Tax | 98.19 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 98.03 | |
| d2cmda1 | 145 | Malate dehydrogenase {Escherichia coli [TaxId: 562 | 98.01 | |
| d1e5qa1 | 182 | Saccharopine reductase {Rice blast fungus (Magnapo | 97.94 | |
| d1hyea1 | 145 | MJ0490, lactate/malate dehydrogenase {Archaeon Met | 97.94 | |
| d1y6ja1 | 142 | Lactate dehydrogenase {Clostridium thermocellum [T | 97.86 | |
| d1ldna1 | 148 | Lactate dehydrogenase {Bacillus stearothermophilus | 97.84 | |
| d1o6za1 | 142 | Malate dehydrogenase {Archaeon Haloarcula marismor | 97.8 | |
| d1a5za1 | 140 | Lactate dehydrogenase {Thermotoga maritima [TaxId: | 97.76 | |
| d1guza1 | 142 | Malate dehydrogenase {Chlorobium vibrioforme [TaxI | 97.67 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 97.62 | |
| d7mdha1 | 175 | Malate dehydrogenase {Sorghum (Sorghum vulgare), c | 97.58 | |
| d1llda1 | 143 | Lactate dehydrogenase {Bifidobacterium longum, str | 97.56 | |
| d1pzga1 | 154 | Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5 | 97.55 | |
| d1y7ta1 | 154 | Malate dehydrogenase {Thermus thermophilus [TaxId: | 97.54 | |
| d1i0za1 | 160 | Lactate dehydrogenase {Human (Homo sapiens), heart | 97.41 | |
| d1kjqa2 | 111 | Glycinamide ribonucleotide transformylase PurT, N- | 97.38 | |
| d1jaya_ | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae | 97.37 | |
| d1ojua1 | 142 | Malate dehydrogenase {Archaeon Archaeoglobus fulgi | 97.35 | |
| d5mdha1 | 154 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 97.34 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 97.33 | |
| d1id1a_ | 153 | Rck domain from putative potassium channel Kch {Es | 97.3 | |
| d1xa0a2 | 176 | B. subtilis YhfP homologue {Bacillus stearothermop | 97.29 | |
| d1hyha1 | 146 | L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La | 97.25 | |
| d2ldxa1 | 159 | Lactate dehydrogenase {Mouse (Mus musculus) [TaxId | 97.24 | |
| d1t4ba1 | 146 | Aspartate beta-semialdehyde dehydrogenase {Escheri | 97.14 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 97.12 | |
| d1t2da1 | 150 | Lactate dehydrogenase {Malaria parasite (Plasmodiu | 97.09 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 97.06 | |
| d1pjqa1 | 113 | Siroheme synthase CysG, domain 1 {Salmonella typhi | 97.06 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 97.04 | |
| d1uxja1 | 142 | Malate dehydrogenase {Chloroflexus aurantiacus [Ta | 97.04 | |
| d2pv7a2 | 152 | Prephenate dehydrogenase TyrA {Haemophilus influen | 97.0 | |
| d2hjsa1 | 144 | Usg-1 protein homolog PA3116 {Pseudomonas aerugino | 96.85 | |
| d1vi2a1 | 182 | Putative shikimate dehydrogenase YdiB {Escherichia | 96.84 | |
| d1u7za_ | 223 | Coenzyme A biosynthesis bifunctional protein CoaBC | 96.74 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 96.74 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 96.73 | |
| d1d7ya2 | 121 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 96.71 | |
| d1nhpa2 | 123 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 96.68 | |
| d1ebda2 | 117 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 96.67 | |
| d1vj1a2 | 187 | Putative zinc-binding alcohol dehydrogenase {Mouse | 96.66 | |
| d1mv8a2 | 202 | GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos | 96.63 | |
| d2fy8a1 | 129 | Potassium channel-related protein MthK {Archaeon M | 96.62 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 96.62 | |
| d1tt7a2 | 167 | Hypothetical protein YhfP {Bacillus subtilis [TaxI | 96.6 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 96.58 | |
| d1onfa2 | 117 | Glutathione reductase {Plasmodium falciparum [TaxI | 96.57 | |
| d1o89a2 | 177 | Hypothetical protein YhdH {Escherichia coli [TaxId | 96.56 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 96.55 | |
| d1h6va2 | 122 | Mammalian thioredoxin reductase {Rat (Rattus norve | 96.54 | |
| d1gpja2 | 159 | Glutamyl tRNA-reductase middle domain {Archaeon Me | 96.5 | |
| d1ks9a2 | 167 | Ketopantoate reductase PanE {Escherichia coli [Tax | 96.46 | |
| d1vm6a3 | 128 | Dihydrodipicolinate reductase {Thermotoga maritima | 96.46 | |
| d3grsa2 | 125 | Glutathione reductase {Human (Homo sapiens) [TaxId | 96.44 | |
| d3lada2 | 119 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 96.43 | |
| d1v59a2 | 122 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 96.41 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 96.38 | |
| d1xhca2 | 122 | NADH oxidase /nitrite reductase {Pyrococcus furios | 96.35 | |
| d1o8ca2 | 77 | Hypothetical protein YhdH {Escherichia coli [TaxId | 96.27 | |
| d2jfga1 | 93 | UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase | 96.26 | |
| d1vpda2 | 161 | Hydroxyisobutyrate dehydrogenase {Salmonella typhi | 96.21 | |
| d1mb4a1 | 147 | Aspartate beta-semialdehyde dehydrogenase {Vibrio | 96.21 | |
| d1gesa2 | 116 | Glutathione reductase {Escherichia coli [TaxId: 56 | 96.18 | |
| d2g17a1 | 179 | N-acetyl-gamma-glutamyl-phosphate reductase ArgC { | 96.17 | |
| d1txga2 | 180 | Glycerol-3- phosphate dehydrogenase {Archaeoglobus | 96.16 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 96.15 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 96.04 | |
| d1lvla2 | 115 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 96.02 | |
| d1i36a2 | 152 | Conserved hypothetical protein MTH1747 {Archaeon M | 96.01 | |
| d3cuma2 | 162 | Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru | 95.97 | |
| d2pgda2 | 176 | 6-phosphogluconate dehydrogenase {Sheep (Ovis orie | 95.95 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 95.93 | |
| d1nyta1 | 170 | Shikimate 5-dehydrogenase AroE {Escherichia coli [ | 95.85 | |
| d2csua1 | 129 | Acetate-CoA ligase alpha chain, AcdA, N-terminal d | 95.84 | |
| d1wdka3 | 186 | Fatty oxidation complex alpha subunit, middle doma | 95.74 | |
| d1f0ya2 | 192 | Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum | 95.71 | |
| d1mo9a2 | 121 | NADH-dependent 2-ketopropyl coenzyme M oxidoreduct | 95.66 | |
| d1gu7a2 | 189 | 2,4-dienoyl-CoA reductase {Yeast (Candida tropical | 95.63 | |
| d1q1ra2 | 133 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 95.58 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 95.54 | |
| d2cvoa1 | 183 | Putative semialdehyde dehydrogenase {Rice (Oryza s | 95.53 | |
| d1ojta2 | 125 | Dihydrolipoamide dehydrogenase {Neisseria meningit | 95.51 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 95.5 | |
| d1dxla2 | 123 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 95.46 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 95.38 | |
| d1p77a1 | 171 | Shikimate 5-dehydrogenase AroE {Haemophilus influe | 95.13 | |
| d1yl7a1 | 135 | Dihydrodipicolinate reductase {Mycobacterium tuber | 94.97 | |
| d1obba1 | 171 | Alpha-glucosidase AglA {Thermotoga maritima [TaxId | 94.87 | |
| d1c0pa1 | 268 | D-aminoacid oxidase, N-terminal domain {Rhodotorul | 94.82 | |
| d1p3da1 | 96 | UDP-N-acetylmuramate-alanine ligase MurC {Haemophi | 94.82 | |
| d1n1ea2 | 189 | Glycerol-3- phosphate dehydrogenase {Trypanosome ( | 94.72 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 94.72 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 94.7 | |
| d1diha1 | 162 | Dihydrodipicolinate reductase {Escherichia coli [T | 94.58 | |
| d1qp8a1 | 181 | Putative formate dehydrogenase {Archaeon Pyrobacul | 94.56 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 94.54 | |
| d1j6ua1 | 89 | UDP-N-acetylmuramate-alanine ligase MurC {Thermoto | 94.48 | |
| d1vkna1 | 176 | N-acetyl-gamma-glutamyl-phosphate reductase ArgC { | 94.42 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 94.37 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 94.28 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 94.23 | |
| d1u8xx1 | 167 | Maltose-6'-phosphate glucosidase GlvA {Bacillus su | 94.2 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 94.17 | |
| d1pgja2 | 178 | 6-phosphogluconate dehydrogenase {Trypanosoma bruc | 94.09 | |
| d1npya1 | 167 | Shikimate 5-dehydrogenase-like protein HI0607 {Hae | 94.06 | |
| d1li4a1 | 163 | S-adenosylhomocystein hydrolase {Human (Homo sapie | 94.02 | |
| d1jw9b_ | 247 | Molybdenum cofactor biosynthesis protein MoeB {Esc | 94.01 | |
| d2ahra2 | 152 | Pyrroline-5-carboxylate reductase ProC {Streptococ | 93.92 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 93.84 | |
| d2voua1 | 265 | Dihydroxypyridine hydroxylase DhpH {Arthrobacter n | 93.77 | |
| d1feca2 | 117 | Trypanothione reductase {Crithidia fasciculata [Ta | 93.63 | |
| d1yqga2 | 152 | Pyrroline-5-carboxylate reductase ProC {Neisseria | 93.62 | |
| d1kyqa1 | 150 | Bifunctional dehydrogenase/ferrochelatase Met8p, N | 93.61 | |
| d1nvta1 | 177 | Shikimate 5-dehydrogenase AroE {Archaeon Methanoco | 93.61 | |
| d1djqa3 | 233 | Trimethylamine dehydrogenase, middle domain {Methy | 93.61 | |
| d1ps9a3 | 179 | 2,4-dienoyl-CoA reductase, middle domain {Escheric | 93.58 | |
| d1gtea4 | 196 | Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su | 93.54 | |
| d1sc6a1 | 188 | Phosphoglycerate dehydrogenase {Escherichia coli [ | 93.48 | |
| d1aoga2 | 117 | Trypanothione reductase {Trypanosoma cruzi [TaxId: | 93.35 | |
| d1s6ya1 | 169 | 6-phospho-beta-glucosidase {Bacillus stearothermop | 93.33 | |
| d2gz1a1 | 154 | Aspartate beta-semialdehyde dehydrogenase {Strepto | 93.25 | |
| d1fcda1 | 186 | Flavocytochrome c sulfide dehydrogenase, FCSD, fla | 93.18 | |
| d1m6ia2 | 137 | Apoptosis-inducing factor (AIF) {Human (Homo sapie | 93.12 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 93.1 | |
| d1b0aa1 | 166 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 93.09 | |
| d1j4aa1 | 197 | D-lactate dehydrogenase {Lactobacillus helveticus | 93.09 | |
| d1seza1 | 373 | Protoporphyrinogen oxidase {Tobacco (Nicotiana tab | 92.85 | |
| d2iida1 | 370 | L-aminoacid oxidase {Malayan pit viper (Calloselas | 92.7 | |
| d1q0qa2 | 151 | 1-deoxy-D-xylulose-5-phosphate reductoisomerase {E | 92.48 | |
| d2bi7a1 | 314 | UDP-galactopyranose mutase, N-terminal domain {Kle | 92.43 | |
| d1v8ba1 | 163 | S-adenosylhomocystein hydrolase {Plasmodium falcip | 92.24 | |
| d1mx3a1 | 193 | Transcription corepressor CtbP {Human (Homo sapien | 92.23 | |
| d2blna2 | 203 | Polymyxin resistance protein ArnA, N-terminal doma | 92.1 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 92.1 | |
| d1dxya1 | 199 | D-2-hydroxyisocaproate dehydrogenase {Lactobacillu | 92.09 | |
| d1a4ia1 | 170 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 92.03 | |
| d2ivda1 | 347 | Protoporphyrinogen oxidase {Myxococcus xanthus [Ta | 92.0 | |
| d1a9xa3 | 127 | Carbamoyl phosphate synthetase (CPS), large subuni | 91.61 | |
| d1c1da1 | 201 | Phenylalanine dehydrogenase {Rhodococcus sp., M4 [ | 91.39 | |
| d1a9xa4 | 121 | Carbamoyl phosphate synthetase (CPS), large subuni | 91.37 | |
| d1gdha1 | 191 | D-glycerate dehydrogenase {Hyphomicrobium methylov | 91.27 | |
| d1ygya1 | 184 | Phosphoglycerate dehydrogenase {Mycobacterium tube | 91.17 | |
| d1ryia1 | 276 | Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | 91.15 | |
| d1gsoa2 | 105 | Glycinamide ribonucleotide synthetase (GAR-syn), N | 90.94 | |
| d1edza1 | 171 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 90.92 | |
| d1yova1 | 529 | Amyloid beta precursor protein-binding protein 1, | 90.66 | |
| d2naca1 | 188 | Formate dehydrogenase {Pseudomonas sp., strain 101 | 90.55 | |
| d1cdoa2 | 175 | Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI | 90.54 | |
| d1djqa2 | 156 | Trimethylamine dehydrogenase, C-terminal domain {M | 90.45 | |
| d1yovb1 | 426 | UBA3 {Human (Homo sapiens) [TaxId: 9606]} | 90.43 | |
| d1q1ra1 | 185 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 90.31 | |
| d3etja2 | 78 | N5-carboxyaminoimidazole ribonucleotide synthetase | 90.29 | |
| d1j5pa4 | 132 | Hypothetical protein TM1643 {Thermotoga maritima [ | 90.24 | |
| d1dlja2 | 196 | UDP-glucose dehydrogenase (UDPGDH) {Streptococcus | 89.84 | |
| d2dw4a2 | 449 | Lysine-specific histone demethylase 1, LSD1 {Human | 89.72 | |
| d2d59a1 | 139 | Hypothetical protein PH1109 {Pyrococcus horikoshii | 89.68 | |
| d1nvmb1 | 157 | Acetaldehyde dehydrogenase (acylating) {Pseudomona | 89.64 | |
| d2bcgg1 | 297 | Guanine nucleotide dissociation inhibitor, GDI {Ba | 89.63 | |
| d1fmta2 | 206 | Methionyl-tRNAfmet formyltransferase {Escherichia | 89.4 | |
| d2gv8a1 | 335 | Flavin-dependent monoxygenase SPBP16F5.08c {Schizo | 89.21 | |
| d1kifa1 | 246 | D-aminoacid oxidase, N-terminal domain {Pig (Sus s | 89.01 | |
| d1f06a1 | 170 | Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb | 88.95 | |
| d1leha1 | 230 | Leucine dehydrogenase {Bacillus sphaericus [TaxId: | 88.74 | |
| d2gf3a1 | 281 | Sarcosine oxidase {Bacillus sp., strain b0618 [Tax | 88.62 | |
| d1nhpa1 | 198 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 88.61 | |
| d1r0ka2 | 150 | 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Z | 88.55 | |
| d2dt5a2 | 126 | Transcriptional repressor Rex, C-terminal domain { | 88.44 | |
| d1hwxa1 | 293 | Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: | 87.95 | |
| d1y81a1 | 116 | Hypothetical protein PF0725 {Pyrococcus furiosus [ | 87.63 | |
| d3c96a1 | 288 | Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: | 87.52 | |
| d1pj5a2 | 305 | N,N-dimethylglycine oxidase {Arthrobacter globifor | 87.49 | |
| d1i8ta1 | 298 | UDP-galactopyranose mutase, N-terminal domain {Esc | 87.28 | |
| d1d5ta1 | 336 | Guanine nucleotide dissociation inhibitor, GDI {Co | 86.65 | |
| d1xk7a1 | 402 | Crotonobetainyl-CoA:carnitine CoA-transferase, Cai | 86.57 | |
| d2cvza2 | 156 | Hydroxyisobutyrate dehydrogenase {Thermus thermoph | 86.52 | |
| d1b5qa1 | 347 | Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | 85.92 | |
| d1xhca1 | 167 | NADH oxidase /nitrite reductase {Pyrococcus furios | 85.72 | |
| d1k0ia1 | 292 | p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a | 85.5 | |
| d1w4xa1 | 298 | Phenylacetone monooxygenase {Thermobifida fusca [T | 85.47 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 84.86 | |
| d2bw0a2 | 203 | 10-formyltetrahydrofolate dehydrogenase domain 1 { | 83.74 | |
| d2v5za1 | 383 | Monoamine oxidase B {Human (Homo sapiens) [TaxId: | 83.7 | |
| d2czca2 | 172 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 82.99 | |
| d1d7ya1 | 183 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 82.5 | |
| d1gtea3 | 153 | Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su | 82.4 | |
| d1v9la1 | 242 | Glutamate dehydrogenase {Pyrobaculum islandicum [T | 81.52 | |
| d2i0za1 | 251 | Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396] | 81.28 | |
| d1cjca2 | 230 | Adrenodoxin reductase of mitochondrial p450 system | 81.09 | |
| d1b7go1 | 178 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 80.14 | |
| d1n4wa1 | 367 | Cholesterol oxidase of GMC family {Streptomyces sp | 80.08 |
| >d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.2e-49 Score=398.40 Aligned_cols=316 Identities=22% Similarity=0.231 Sum_probs=256.8
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHH-HHHH-HhhccCCeEEEEecCCCHHHHHHhhccCCccE
Q 012176 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLK-RARQ-KLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTH 196 (469)
Q Consensus 119 ~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~-~~~~-~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~d~ 196 (469)
|+|||||||||||++|+++|+++|++|++++|.....+.... .... ......+++++++|++|.+++++++++++||+
T Consensus 2 K~vLITGatGfiGs~lv~~Ll~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~ 81 (357)
T d1db3a_ 2 KVALITGVTGQDGSYLAEFLLEKGYEVHGIKRRASSFNTERVDHIYQDPHTCNPKFHLHYGDLSDTSNLTRILREVQPDE 81 (357)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEECC---------------------CCEEECCCCSSCHHHHHHHHHHHCCSE
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCcCEEEEEECCCcccchhhHHHHHhhhhhcCCCeEEEEeecCCHHHHHHHHhccCCCE
Confidence 789999999999999999999999999999996543322111 1111 12234589999999999999999999999999
Q ss_pred EEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCC--CeEEEEcCccccCCCCCCCCCCCCCCCCCCChHHHHH
Q 012176 197 VLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQ--PSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATK 274 (469)
Q Consensus 197 Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~--~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y~~sK 274 (469)
|||+||..+...+.+++..++++|+.||.+|+++|++.+++ .+|||+||++|||.....|++|+++. .|.+.|+.+|
T Consensus 82 v~h~aa~~~~~~~~~~~~~~~~~Nv~gt~nllea~~~~~~~~~~r~i~~SS~~vYG~~~~~~~~E~~~~-~P~~~Y~~sK 160 (357)
T d1db3a_ 82 VYNLGAMSHVAVSFESPEYTADVDAMGTLRLLEAIRFLGLEKKTRFYQASTSELYGLVQEIPQKETTPF-YPRSPYAVAK 160 (357)
T ss_dssp EEECCCCCTTTTTTSCHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEEEGGGGTTCCSSSBCTTSCC-CCCSHHHHHH
T ss_pred EEEeecccccchhhhCHHHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEchhhhCCCCCCCcCCCCCC-CCCChHHHHH
Confidence 99999998888888999999999999999999999988764 27999999999998878899999987 7899999999
Q ss_pred HHHHHHHHHHHHHhCCcEEEEeecceecCCCCCCCh---HHHHHHHHHcCCceEEEeeCCCCcceEecccHHHHHHHHHH
Q 012176 275 KAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPDMA---YFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVG 351 (469)
Q Consensus 275 ~~~E~~~~~~~~~~gi~~~ilRp~~v~Gp~~~~~~~---~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~~~~~ 351 (469)
.++|.+++.+++.++++++++||++||||+...+.. +..++..+..+++..+.. |++++.++|+||+|+|++++.
T Consensus 161 ~~~E~~~~~~~~~~~l~~~ilR~~~vyGp~~~~~~~~~~i~~~~~~~~~~~~~~~~~--g~~~~~r~~~~v~D~~~a~~~ 238 (357)
T d1db3a_ 161 LYAYWITVNYRESYGMYACNGILFNHESPRRGETFVTRKITRAIANIAQGLESCLYL--GNMDSLRDWGHAKDYVKMQWM 238 (357)
T ss_dssp HHHHHHHHHHHHHHCCCEEEEEECCEECTTSCTTSHHHHHHHHHHHHHTTSCCCEEE--SCTTCEECCEEHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeccccCCCCCcCCCchHHHHHHHHHHhCCCceEEE--CCCCeeecceeechHHHHHHH
Confidence 999999999999999999999999999998766543 334445555666544332 778999999999999999999
Q ss_pred HhccCCCCCCCCCceEEEeCCCCcccHHHHHHHHHHHhCCCccceeecC------------------------------C
Q 012176 352 ATGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRM------------------------------P 401 (469)
Q Consensus 352 ~~~~~~~~~~~~~~~iyni~~~~~vt~~el~~~i~~~~g~~~~~~~~~~------------------------------~ 401 (469)
++++.. +++||+++++++|+.|+++.+.+.+|........+. .
T Consensus 239 ~~~~~~-------~~~yni~sg~~~s~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (357)
T d1db3a_ 239 MLQQEQ-------PEDFVIATGVQYSVRQFVEMAAAQLGIKLRFEGTGVEEKGIVVSVTGHDAPGVKPGDVIIAVDPRYF 311 (357)
T ss_dssp TTSSSS-------CCCEEECCCCCEEHHHHHHHHHHTTTEEEEEESCGGGCEEEEEEECSSSCTTCCTTCEEEEECGGGC
T ss_pred HHhCCC-------CCeEEECCCCceehHHHHHHHHHHhCCccccccccccccchhhhhhcccccccccCceeEeeccccC
Confidence 987642 389999999999999999999999996543321110 1
Q ss_pred CCCCCCcccCChHHHHHhcCCCccCcHHHHHHHHHHHHHHHcC
Q 012176 402 RNGDVPYTHANVSLAYKDFGYKPTTDLAAGLRKFVKWYVSYYG 444 (469)
Q Consensus 402 ~~~~~~~~~~d~~ka~~~LG~~p~~~l~~~l~~~v~~~~~~~~ 444 (469)
++.+.....+|++|++++|||+|+++|+|+|+++++++++..+
T Consensus 312 r~~~~~~~~~d~skakk~LGw~P~~sl~egI~~~I~~~l~~~k 354 (357)
T d1db3a_ 312 RPAEVETLLGDPTKAHEKLGWKPEITLREMVSEMVANDLEAAK 354 (357)
T ss_dssp CCCC-CCCCBCCHHHHHHHCCCCCSCHHHHHHHHHHHHHHHHH
T ss_pred CCccccccccCHHHHHHHHCCCcCCCHHHHHHHHHHHHHHHHh
Confidence 2345566678999999999999999999999999998877654
|
| >d1r6da_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptomyces venezuelae [TaxId: 54571]
Probab=100.00 E-value=1.2e-49 Score=392.59 Aligned_cols=310 Identities=26% Similarity=0.427 Sum_probs=274.1
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCCcE------EEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccC
Q 012176 119 MTVLVTGAAGFVGSHCSLALKKRGDGV------LGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV 192 (469)
Q Consensus 119 ~~VlVtGatG~IG~~l~~~L~~~G~~V------~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~ 192 (469)
|+||||||+||||++|++.|+++|++| +++++........ .........++.++.+|+.+.......+...
T Consensus 1 MkIlItG~tGfIG~~l~~~L~~~g~~v~~~~~i~~~d~~~~~~~~~---~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 77 (322)
T d1r6da_ 1 MRLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRA---NLAPVDADPRLRFVHGDIRDAGLLARELRGV 77 (322)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTSCTTSCCSEEEEEECCCTTCCGG---GGGGGTTCTTEEEEECCTTCHHHHHHHTTTC
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCCccCCceEEEEeCCCccccHh---HhhhhhcCCCeEEEEeccccchhhhcccccc
Confidence 789999999999999999999999855 4444433222111 1112223458999999999999988887766
Q ss_pred CccEEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcCccccCCCCCCCCCCCCCCCCCCChHHH
Q 012176 193 PFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAA 272 (469)
Q Consensus 193 ~~d~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y~~ 272 (469)
|+|+|+|+.........++...++.|+.|+.+++++|++.+++ +|||+||.++||.....+++|+++. .|.+.|+.
T Consensus 78 --d~vi~~a~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~~~~-~~I~~Ss~~~yg~~~~~~~~E~~~~-~p~~~Y~~ 153 (322)
T d1r6da_ 78 --DAIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDAGVG-RVVHVSTNQVYGSIDSGSWTESSPL-EPNSPYAA 153 (322)
T ss_dssp --CEEEECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHTTCC-EEEEEEEGGGGCCCSSSCBCTTSCC-CCCSHHHH
T ss_pred --ceEEeecccccccccccchHHHhhhhHHHHHHHHHHHHHcCCc-eEEEeecceeecCCCCCCCCCCCCC-CCCCHHHH
Confidence 9999999998888888889999999999999999999999986 9999999999999888899999987 79999999
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceEecccHHHHHHHHHHH
Q 012176 273 TKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGA 352 (469)
Q Consensus 273 sK~~~E~~~~~~~~~~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~~~~~~ 352 (469)
+|.++|.+++.++++++++++++||++||||+...+.+++.+++++..++++.++ +++++.++|+|++|+|++++.+
T Consensus 154 sK~~~E~~~~~~~~~~~~~~~~lR~~~vyGp~~~~~~~i~~~i~~~~~~~~i~v~---~~g~~~r~~i~v~D~a~ai~~~ 230 (322)
T d1r6da_ 154 SKAGSDLVARAYHRTYGLDVRITRCCNNYGPYQHPEKLIPLFVTNLLDGGTLPLY---GDGANVREWVHTDDHCRGIALV 230 (322)
T ss_dssp HHHHHHHHHHHHHHHHCCCEEEEEECEEECTTCCTTSHHHHHHHHHHTTCCEEEE---TTSCCEEEEEEHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEEeeeEECcCCCcCcHHHHHHHHHHcCCCcEEe---cCCCeEEccEEHHHHHHHHHHH
Confidence 9999999999999999999999999999999988888999999999999999998 7899999999999999999999
Q ss_pred hccCCCCCCCCCceEEEeCCCCcccHHHHHHHHHHHhCCCccceeecCCCCCCCCcccCChHHHHHhcCCCccCcHHHHH
Q 012176 353 TGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRNGDVPYTHANVSLAYKDFGYKPTTDLAAGL 432 (469)
Q Consensus 353 ~~~~~~~~~~~~~~iyni~~~~~vt~~el~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~~l~~~l 432 (469)
++++. .+++||+++++++++.|+++.+.+.+|.+........++.++.....+|++|++++|||+|+++++|+|
T Consensus 231 ~~~~~------~~~~~ni~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lg~~p~~~~eegI 304 (322)
T d1r6da_ 231 LAGGR------AGEIYHIGGGLELTNRELTGILLDSLGADWSSVRKVADRKGHDLRYSLDGGKIERELGYRPQVSFADGL 304 (322)
T ss_dssp HHHCC------TTCEEEECCCCEEEHHHHHHHHHHHHTCCGGGEEEECCCTTCCCBCCBCCHHHHHHHCCCCCSCHHHHH
T ss_pred HhCCC------CCCeeEEeecccchhHHHHHHHHHHhCCCccceeecCCCCCCCceeeeCHHHHHHHHCCCCCCCHHHHH
Confidence 98863 348999999999999999999999999987776666667777778889999999999999999999999
Q ss_pred HHHHHHHHHHcC
Q 012176 433 RKFVKWYVSYYG 444 (469)
Q Consensus 433 ~~~v~~~~~~~~ 444 (469)
+++++||+++.+
T Consensus 305 ~~~i~w~~~n~~ 316 (322)
T d1r6da_ 305 ARTVRWYRENRG 316 (322)
T ss_dssp HHHHHHHHHCHH
T ss_pred HHHHHHHHHhHH
Confidence 999999998654
|
| >d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Probab=100.00 E-value=1.4e-48 Score=391.16 Aligned_cols=314 Identities=23% Similarity=0.399 Sum_probs=263.1
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCCcEE-EEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCccEE
Q 012176 119 MTVLVTGAAGFVGSHCSLALKKRGDGVL-GLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTHV 197 (469)
Q Consensus 119 ~~VlVtGatG~IG~~l~~~L~~~G~~V~-~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~d~V 197 (469)
|+||||||+||||++|+++|+++|++|+ ++++....... ..........+++++++|++|.+.+.+++++.++|+|
T Consensus 1 MkILItG~tGfIGs~l~~~L~~~g~~vv~~~d~~~~~~~~---~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~~~d~V 77 (361)
T d1kewa_ 1 MKILITGGAGFIGSAVVRHIIKNTQDTVVNIDKLTYAGNL---ESLSDISESNRYNFEHADICDSAEITRIFEQYQPDAV 77 (361)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHHCSCEEEEEECCCTTCCG---GGGTTTTTCTTEEEEECCTTCHHHHHHHHHHHCCSEE
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCCccccH---HHHHhhhhcCCcEEEEccCCCHHHHHHHHHhCCCCEE
Confidence 7899999999999999999999999854 45543322111 1112234456899999999999999999998889999
Q ss_pred EEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCC--------CeEEEEcCccccCCCCCC---------CCCCC
Q 012176 198 LHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQ--------PSIVWASSSSVYGLNTQV---------PFSES 260 (469)
Q Consensus 198 ih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~--------~~~V~~SS~~vyg~~~~~---------~~~E~ 260 (469)
||+||..++..+..++..++++|+.|+.+++++|++.++. .+|||+||..|||..... +..++
T Consensus 78 ihlAa~~~~~~~~~~p~~~~~~N~~gt~nl~~~~~~~~~~~~~~~~~~~~~i~~SS~~vyg~~~~~~~~~~~~~~~~~~e 157 (361)
T d1kewa_ 78 MHLAAESHVDRSITGPAAFIETNIVGTYALLEVARKYWSALGEDKKNNFRFHHISTDEVYGDLPHPDEVENSVTLPLFTE 157 (361)
T ss_dssp EECCSCCCHHHHHHCTHHHHHHHTHHHHHHHHHHHHHHHTSCHHHHHHCEEEEEEEGGGGCCCCCGGGSCTTSCCCCBCT
T ss_pred EECccccchhhHHhCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCceEEEEeccceeeCCCccCCccccccCCCCccc
Confidence 9999998888888899999999999999999999876532 389999999999865432 23333
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHhCCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceEecc
Q 012176 261 HRTDQPASLYAATKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFT 340 (469)
Q Consensus 261 ~~~~~p~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v 340 (469)
+.+..|.+.|+.+|.++|.++..+++.++++++++||++||||++..+.+++.++..+..|+++.++ +++++.++|+
T Consensus 158 ~~~~~p~s~Yg~sK~~~E~~~~~~~~~~~i~~~~lR~~~vyGp~~~~~~~i~~~i~~~~~g~~~~v~---g~g~~~r~~i 234 (361)
T d1kewa_ 158 TTAYAPSSPYSASKASSDHLVRAWRRTYGLPTIVTNCSNNYGPYHFPEKLIPLVILNALEGKPLPIY---GKGDQIRDWL 234 (361)
T ss_dssp TSCCCCCSHHHHHHHHHHHHHHHHHHHHCCCEEEEEECEEESTTCCTTSHHHHHHHHHHHTCCEEEE---TTSCCEEEEE
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCEEEEecCceECcCCCcCcHHHHHHHHHHcCCCcEEe---CCCCeEEeCE
Confidence 3444788999999999999999999999999999999999999998888899999999999999998 7899999999
Q ss_pred cHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCCcccHHHHHHHHHHHhCCCcc-------ceeecCCCCCCCCcccCCh
Q 012176 341 YIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAK-------KHVIRMPRNGDVPYTHANV 413 (469)
Q Consensus 341 ~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~~vt~~el~~~i~~~~g~~~~-------~~~~~~~~~~~~~~~~~d~ 413 (469)
|++|+|++++.++++.. .+++|||++++++++.|+++.+.+.++.... .......++++...+.+|+
T Consensus 235 ~v~D~a~ai~~~~~~~~------~~~~~Ni~s~~~~s~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 308 (361)
T d1kewa_ 235 YVEDHARALHMVVTEGK------AGETYNIGGHNEKKNLDVVFTICDLLDEIVPKATSYREQITYVADRPGHDRRYAIDA 308 (361)
T ss_dssp EHHHHHHHHHHHHHHCC------TTCEEEECCCCEEEHHHHHHHHHHHHHHHSCCSSCGGGGEEEECCCTTCCCBCCBCC
T ss_pred EHHHHHHHHHHHHhcCC------CCCeEEECCCCCcchHHHHhHhhhhcccccccccCcccceeecCCCCCCCceeeeCH
Confidence 99999999999998763 2489999999999999999999988753321 1112233456777889999
Q ss_pred HHHHHhcCCCccCcHHHHHHHHHHHHHHHcC
Q 012176 414 SLAYKDFGYKPTTDLAAGLRKFVKWYVSYYG 444 (469)
Q Consensus 414 ~ka~~~LG~~p~~~l~~~l~~~v~~~~~~~~ 444 (469)
+|++++|||+|+++++++|+++++||+++..
T Consensus 309 ~k~~~~lgw~P~~~l~e~i~~ti~w~~~n~~ 339 (361)
T d1kewa_ 309 GKISRELGWKPLETFESGIRKTVEWYLANTQ 339 (361)
T ss_dssp HHHHHHHCCCCSCCHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHCCCCCCCHHHHHHHHHHHHHHhHH
Confidence 9999999999999999999999999988743
|
| >d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-glucuronate decarboxylase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.2e-48 Score=382.06 Aligned_cols=303 Identities=26% Similarity=0.394 Sum_probs=257.1
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCccEE
Q 012176 118 GMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTHV 197 (469)
Q Consensus 118 ~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~d~V 197 (469)
+|+||||||+||||++|+++|+++|++|++++|........+ ........+.+...|+. +.++.+ +|+|
T Consensus 1 kKKIlVtG~sGfiG~~lv~~L~~~g~~V~~~d~~~~~~~~~~----~~~~~~~~~d~~~~~~~-----~~~~~~--~d~V 69 (312)
T d2b69a1 1 RKRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNV----EHWIGHENFELINHDVV-----EPLYIE--VDQI 69 (312)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCGGGT----GGGTTCTTEEEEECCTT-----SCCCCC--CSEE
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCCcCCHHHH----HHhcCCCceEEEehHHH-----HHHHcC--CCEE
Confidence 479999999999999999999999999999997543222211 12223335666666654 345544 5999
Q ss_pred EEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcCccccCCCCCCCCCCCCC----CCCCCChHHHH
Q 012176 198 LHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHR----TDQPASLYAAT 273 (469)
Q Consensus 198 ih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~----~~~p~~~Y~~s 273 (469)
||+||......+..++...+++|+.|+.+|+++|++.++ ++||+||.+|||.....|.+|+.. +..|.+.|+.+
T Consensus 70 ihlAa~~~~~~~~~~~~~~~~~Nv~g~~~ll~~~~~~~~--k~I~~SS~~vy~~~~~~~~~e~~~~~~~~~~p~~~Y~~s 147 (312)
T d2b69a1 70 YHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGA--RLLLASTSEVYGDPEVHPQSEDYWGHVNPIGPRACYDEG 147 (312)
T ss_dssp EECCSCCSHHHHTTCHHHHHHHHHHHHHHHHHHHHHHTC--EEEEEEEGGGGBSCSSSSBCTTCCCBCCSSSTTHHHHHH
T ss_pred EECcccCCchhHHhCHHHHHHHHHHHHHHHHHHHHHcCC--cEEEEEChheecCCCCCCCCccccCCCCCCCCccHHHHH
Confidence 999998887777789999999999999999999999885 799999999999877767776542 22678899999
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEeecceecCCCCCC--ChHHHHHHHHHcCCceEEEeeCCCCcceEecccHHHHHHHHHH
Q 012176 274 KKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPD--MAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVG 351 (469)
Q Consensus 274 K~~~E~~~~~~~~~~gi~~~ilRp~~v~Gp~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~~~~~ 351 (469)
|.++|.+++.+++.+|++++++||++||||+...+ .+++.++..+..|+++.++ +++.+.++|+|++|++++++.
T Consensus 148 K~~~E~~~~~~~~~~~~~~~~lR~~~vyGp~~~~~~~~~i~~~i~~~~~g~~i~i~---~~g~~~r~~i~v~D~~~~~~~ 224 (312)
T d2b69a1 148 KRVAETMCYAYMKQEGVEVRVARIFNTFGPRMHMNDGRVVSNFILQALQGEPLTVY---GSGSQTRAFQYVSDLVNGLVA 224 (312)
T ss_dssp HHHHHHHHHHHHHHHCCCEEEEEECCEECTTCCTTCCCHHHHHHHHHHHTCCEEEE---SSSCCEEECEEHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCcEEEEEeeeEECCCCCCCCccHHHHHHHHHHcCCCeEEe---CCCCeeEccEEHHHHHHHHHH
Confidence 99999999999999999999999999999986543 4788999999999999998 779999999999999999999
Q ss_pred HhccCCCCCCCCCceEEEeCCCCcccHHHHHHHHHHHhCCCccceeecCCCCCCCCcccCChHHHHHhcCCCccCcHHHH
Q 012176 352 ATGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRNGDVPYTHANVSLAYKDFGYKPTTDLAAG 431 (469)
Q Consensus 352 ~~~~~~~~~~~~~~~iyni~~~~~vt~~el~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~~l~~~ 431 (469)
+++... +++||++++..+++.++++.+.+.+|.+.++...+. ..++...+.+|++|++++|||+|+++++++
T Consensus 225 ~~~~~~-------~~~~n~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~d~~k~~~~lgw~p~~~l~~~ 296 (312)
T d2b69a1 225 LMNSNV-------SSPVNLGNPEEHTILEFAQLIKNLVGSGSEIQFLSE-AQDDPQKRKPDIKKAKLMLGWEPVVPLEEG 296 (312)
T ss_dssp HHTSSC-------CSCEEESCCCEEEHHHHHHHHHHHHTCCCCEEEECC-CTTCCCCCCBCCHHHHHHHCCCCCSCHHHH
T ss_pred HHhhcc-------CCceEecCCcccchhhHHHHHHHHhCCCCceEECCC-CCCCCCeeeECHHHHHHHHCCCCCCCHHHH
Confidence 986542 378999999999999999999999999988777664 456777888999999999999999999999
Q ss_pred HHHHHHHHHHHcC
Q 012176 432 LRKFVKWYVSYYG 444 (469)
Q Consensus 432 l~~~v~~~~~~~~ 444 (469)
|+++++||+++++
T Consensus 297 I~~~i~w~~~~~~ 309 (312)
T d2b69a1 297 LNKAIHYFRKELE 309 (312)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999988765
|
| >d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=4.8e-47 Score=376.44 Aligned_cols=321 Identities=24% Similarity=0.385 Sum_probs=269.7
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCccEEE
Q 012176 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTHVL 198 (469)
Q Consensus 119 ~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~d~Vi 198 (469)
|+||||||+||||++|++.|+++|++|++++|............ ......++.++++|++|.+.+.++++..++|+||
T Consensus 1 MKiLItG~tGfIG~~l~~~L~~~g~~V~~~d~~~~~~~~~~~~~--~~~~~~~~~~~~~Dl~d~~~l~~~~~~~~~d~Vi 78 (338)
T d1udca_ 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVI--ERLGGKHPTFVEGDIRNEALMTEILHDHAIDTVI 78 (338)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCTTHHHHH--HHHHTSCCEEEECCTTCHHHHHHHHHHTTCSEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCCCcchhhHHHH--HhhcCCCCEEEEeecCCHHHHHHHHhccCCCEEE
Confidence 78999999999999999999999999999998665544333322 2233458999999999999999999988889999
Q ss_pred EcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcCccccCCCCCCCCCCCCCCCCCCChHHHHHHHHH
Q 012176 199 HLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGE 278 (469)
Q Consensus 199 h~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y~~sK~~~E 278 (469)
|+||...+.++..++..++++|+.|+.+++++|++.+++ +||++||.++|+.....+..|+++...|.+.|+.+|.++|
T Consensus 79 HlAa~~~~~~~~~~~~~~~~~Nv~gt~nlL~~~~~~~v~-~~i~~Ss~~vy~~~~~~~~~e~~~~~~p~~~Y~~sK~~~e 157 (338)
T d1udca_ 79 HFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVK-NFIFSSSATVYGDQPKIPYVESFPTGTPQSPYGKSKLMVE 157 (338)
T ss_dssp ECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTCC-EEEEEEEGGGGCSCCSSSBCTTSCCCCCSSHHHHHHHHHH
T ss_pred ECCCccchhhHHhCHHHHHHhHHHHHHHHHHHHHHhCCC-EEEecCcceEEccccccccccccccCCCcchHHHHHhhhh
Confidence 999988888888899999999999999999999999987 9999999999998887788888877789999999999999
Q ss_pred HHHHHHHHH-hCCcEEEEeecceecCCCCC----------CChHHHHHHHHHc-CCceEEEee---CCCCcceEecccHH
Q 012176 279 EIAHTYNHI-YGLALTGLRFFTVYGPWGRP----------DMAYFFFTKDILQ-GKTIDVYKT---QDDREVARDFTYID 343 (469)
Q Consensus 279 ~~~~~~~~~-~gi~~~ilRp~~v~Gp~~~~----------~~~~~~~~~~~~~-g~~~~~~~~---~~~~~~~~~~v~v~ 343 (469)
.++.++..+ .+++++++|+++||||+... +..++.++..+.. +.++.+++. ..++.+.+||+|++
T Consensus 158 ~~~~~~~~~~~~~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~g~~~~~~~g~~~rd~i~v~ 237 (338)
T d1udca_ 158 QILTDLQKAQPDWSIALLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIHVM 237 (338)
T ss_dssp HHHHHHHHHSTTCEEEEEEECEEECCCTTSSSCCCCCSSCCSHHHHHHHHHTTSSSCEEEECSCSSSTTSSCEECEEEHH
T ss_pred HHHHHHHhhccCCeEEEEeeccEEeccCCCCCCCCccccHHHHHHHHHHHHhcCCCCEEEeCCCcccCCCCceeeEEEEe
Confidence 999987765 48999999999999986432 2355666665554 346677631 12478899999999
Q ss_pred HHHHHHHHHhccCCCCCCCCCceEEEeCCCCcccHHHHHHHHHHHhCCCccceeecCCCCCCCCcccCChHHHHHhcCCC
Q 012176 344 DVVKGCVGATGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRNGDVPYTHANVSLAYKDFGYK 423 (469)
Q Consensus 344 Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~~vt~~el~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~d~~ka~~~LG~~ 423 (469)
|++.++..+...... ...+++||+++++++|+.|+++.+.+.+|.+.+....+. ++++.....+|++|++++|||+
T Consensus 238 D~~~~~~~~~~~~~~---~~~~~i~Ni~~~~~~si~e~~~~i~~~~g~~~~~~~~~~-~~~~~~~~~~d~~k~~~~lgwk 313 (338)
T d1udca_ 238 DLADGHVVAMEKLAN---KPGVHIYNLGAGVGNSVLDVVNAFSKACGKPVNYHFAPR-REGDLPAYWADASKADRELNWR 313 (338)
T ss_dssp HHHHHHHHHHHHHTT---CCEEEEEEESCSSCEEHHHHHHHHHHHHTSCCCEEEECC-CTTCCSBCCBCCHHHHHHHCCC
T ss_pred ehhhhcccccccccc---ccCcceeeecCCCCCcHHHHHHHHHHHHCCCCceEECCC-CCCCCCEeeECHHHHHHHHCCC
Confidence 999988887654322 234589999999999999999999999999888776654 4667778889999999999999
Q ss_pred ccCcHHHHHHHHHHHHHHHcCCC
Q 012176 424 PTTDLAAGLRKFVKWYVSYYGIQ 446 (469)
Q Consensus 424 p~~~l~~~l~~~v~~~~~~~~~~ 446 (469)
|+++++++|+++++||.++.+.+
T Consensus 314 p~~~l~egi~~ti~w~~~~~~~~ 336 (338)
T d1udca_ 314 VTRTLDEMAQDTWHWQSRHPQGY 336 (338)
T ss_dssp CCCCHHHHHHHHHHHHHHCTTCS
T ss_pred cCCCHHHHHHHHHHHHHhchhhC
Confidence 99999999999999999986643
|
| >d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-N-acetylglucosamine 4-epimerase WbpP species: Pseudomonas aeruginosa [TaxId: 287]
Probab=100.00 E-value=3.9e-47 Score=377.37 Aligned_cols=318 Identities=31% Similarity=0.467 Sum_probs=273.9
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHh--hccCCeEEEEecCCCHHHHHHhhccCC
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKL--LQKHQVFIVEGDLNDAPLLTKLFDVVP 193 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~v~~v~~Dl~d~~~l~~~~~~~~ 193 (469)
.+.|+|||||||||||++|+++|+++|++|++++|................ .....++++.+|+.|...+.......
T Consensus 14 ~~~k~iLVTG~tGfIGs~lv~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~d~~~~~~~~~~~- 92 (341)
T d1sb8a_ 14 AQPKVWLITGVAGFIGSNLLETLLKLDQKVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQGDIRNLDDCNNACAGV- 92 (341)
T ss_dssp HSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHHSCHHHHTTEEEEECCTTSHHHHHHHHTTC-
T ss_pred CCCCEEEEecCCCHHHHHHHHHHHHCcCEEEEEECCCCcchhhHHHHHHhhhhcccCCeeEEeeccccccccccccccc-
Confidence 456899999999999999999999999999999986655444443332221 22358999999999999988888777
Q ss_pred ccEEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcCccccCCCCCCCCCCCCCCCCCCChHHHH
Q 012176 194 FTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAAT 273 (469)
Q Consensus 194 ~d~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y~~s 273 (469)
++|+|+++......+..++...+++|+.|+.+|+++|++.+++ +|||+||.++||.....|++|+++. .|.+.|+.+
T Consensus 93 -~~v~~~~a~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~-~~i~~SS~~vyg~~~~~~~~E~~~~-~p~~~Y~~s 169 (341)
T d1sb8a_ 93 -DYVLHQAALGSVPRSINDPITSNATNIDGFLNMLIAARDAKVQ-SFTYAASSSTYGDHPGLPKVEDTIG-KPLSPYAVT 169 (341)
T ss_dssp -SEEEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCS-EEEEEEEGGGGTTCCCSSBCTTCCC-CCCSHHHHH
T ss_pred -cccccccccccccccccCccchhheeehhHHHHHHHHHhcCCc-eEEEcccceeeCCCCCCCccCCCCC-CCCCcchHH
Confidence 9999999988877788899999999999999999999999986 9999999999999888899998887 899999999
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEeecceecCCCCCC----ChHHHHHHHHHcCCceEEEeeCCCCcceEecccHHHHHHHH
Q 012176 274 KKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPD----MAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGC 349 (469)
Q Consensus 274 K~~~E~~~~~~~~~~gi~~~ilRp~~v~Gp~~~~~----~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~~~ 349 (469)
|.++|.++..+++.++++++++||++||||+..++ ..+..++..++.|+++.++ +++.+.++|+||+|+|.++
T Consensus 170 K~~~E~~~~~~~~~~~i~~~ilR~~~v~G~~~~~~~~~~~~i~~~~~~~~~g~~i~~~---g~g~~~r~~i~v~D~~~a~ 246 (341)
T d1sb8a_ 170 KYVNELYADVFSRCYGFSTIGLRYFNVFGRRQDPNGAYAAVIPKWTSSMIQGDDVYIN---GDGETSRDFCYIENTVQAN 246 (341)
T ss_dssp HHHHHHHHHHHHHHHCCCCEEEEECCEECTTCCCCSTTCCHHHHHHHHHHHTCCCEEE---SSSCCEECCEEHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCeEEEEeceeeccCcCCCCchhhhHHHHHHHHHcCCceEEc---CCCCEEEEEEEEeccchhh
Confidence 99999999999999999999999999999976544 3667888999999999998 7799999999999999999
Q ss_pred HHHhccCCCCCCCCCceEEEeCCCCcccHHHHHHHHHHHhCCCccceee----cCCCCCCCCcccCChHHHHHhcCCCcc
Q 012176 350 VGATGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVI----RMPRNGDVPYTHANVSLAYKDFGYKPT 425 (469)
Q Consensus 350 ~~~~~~~~~~~~~~~~~iyni~~~~~vt~~el~~~i~~~~g~~~~~~~~----~~~~~~~~~~~~~d~~ka~~~LG~~p~ 425 (469)
..++.... ...+++||++++..+|+.|+++.+.+.++.+...... ...+.++..+..+|++|++++|||+|+
T Consensus 247 ~~~~~~~~----~~~~~~~~~~~~~~~si~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~LGw~p~ 322 (341)
T d1sb8a_ 247 LLAATAGL----DARNQVYNIAVGGRTSLNQLFFALRDGLAENGVSYHREPVYRDFREGDVRHSLADISKAAKLLGYAPK 322 (341)
T ss_dssp HHHHTCCG----GGCSEEEEESCSCCEEHHHHHHHHHHHHHHTTCCCCCCCEEECCCTTCCSBCCBCCHHHHHHTCCCCC
T ss_pred hhhhhccc----cccceeeeecccccchHHHHHHHHHHHhccccccccccccccCCCCCCcCeeeeCHHHHHHHHCCCcC
Confidence 99987653 2345899999999999999999999999865321111 122356677788999999999999999
Q ss_pred CcHHHHHHHHHHHHHHHcC
Q 012176 426 TDLAAGLRKFVKWYVSYYG 444 (469)
Q Consensus 426 ~~l~~~l~~~v~~~~~~~~ 444 (469)
++++++|+++++||+++++
T Consensus 323 ~sl~~gi~~ti~wy~~~~k 341 (341)
T d1sb8a_ 323 YDVSAGVALAMPWYIMFLK 341 (341)
T ss_dssp CCHHHHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHHhcC
Confidence 9999999999999999874
|
| >d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=100.00 E-value=3.5e-45 Score=359.64 Aligned_cols=311 Identities=22% Similarity=0.199 Sum_probs=265.1
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCccEEE
Q 012176 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTHVL 198 (469)
Q Consensus 119 ~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~d~Vi 198 (469)
|+|||||||||||++|+++|+++||+|++++|........ ........++++++.+|+.|.+.+.+++....+++++
T Consensus 1 k~vLItG~tGfiG~~l~~~Ll~~g~~V~~~~r~~~~~~~~---~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~~~ 77 (321)
T d1rpna_ 1 RSALVTGITGQDGAYLAKLLLEKGYRVHGLVARRSSDTRW---RLRELGIEGDIQYEDGDMADACSVQRAVIKAQPQEVY 77 (321)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCH---HHHHTTCGGGEEEEECCTTCHHHHHHHHHHHCCSEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCCCcccHH---HHHHhcccCCcEEEEccccChHHhhhhhccccccccc
Confidence 6899999999999999999999999999999976533221 1112223458999999999999999999988889999
Q ss_pred EcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcCccccCCCCCCCCCCCCCCCCCCChHHHHHHHHH
Q 012176 199 HLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGE 278 (469)
Q Consensus 199 h~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y~~sK~~~E 278 (469)
|+|+.........++..+++.|+.|+.+++++|++.+...+|++.||..+||.....+.+|+++. .|.+.|+.+|.++|
T Consensus 78 ~~a~~~~~~~~~~~~~~~~~~n~~g~~~~l~~~~~~~~~~~~i~~Ss~~~~~~~~~~~~~E~~~~-~p~~~Y~~sK~~~E 156 (321)
T d1rpna_ 78 NLAAQSFVGASWNQPVTTGVVDGLGVTHLLEAIRQFSPETRFYQASTSEMFGLIQAERQDENTPF-YPRSPYGVAKLYGH 156 (321)
T ss_dssp ECCSCCCHHHHTTSHHHHHHHHTHHHHHHHHHHHHHCTTSEEEEEEEGGGGCSCSSSSBCTTSCC-CCCSHHHHHHHHHH
T ss_pred cccccccccccccchHHHHhhhhhchHHHHHHHHHhCCCcccccccchhhcCcccCCCCCCCCCc-cccChhHHHHHHHH
Confidence 99998888888888999999999999999999999998878999999999998888888888877 89999999999999
Q ss_pred HHHHHHHHHhCCcEEEEeecceecCCCCCCCh---HHHHHHHHHcCC-ceEEEeeCCCCcceEecccHHHHHHHHHHHhc
Q 012176 279 EIAHTYNHIYGLALTGLRFFTVYGPWGRPDMA---YFFFTKDILQGK-TIDVYKTQDDREVARDFTYIDDVVKGCVGATG 354 (469)
Q Consensus 279 ~~~~~~~~~~gi~~~ilRp~~v~Gp~~~~~~~---~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~v~v~Dva~~~~~~~~ 354 (469)
.++..++..++++++++||+++|||....+.. +..++.++..++ +.... +++++.++|+|++|+|++++.+++
T Consensus 157 ~~~~~~~~~~~~~~~~lr~~~vyGp~~~~~~~~~~i~~~~~~~~~~~~~~i~~---g~g~~~r~~i~v~D~~~~~~~~~~ 233 (321)
T d1rpna_ 157 WITVNYRESFGLHASSGILFNHESPLRGIEFVTRKVTDAVARIKLGKQQELRL---GNVDAKRDWGFAGDYVEAMWLMLQ 233 (321)
T ss_dssp HHHHHHHHHHCCCEEEEEECCEECTTSCTTSHHHHHHHHHHHHHTTSCSCEEE---SCTTCEEECEEHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCCcEEEEEEecccCCCccccccHHHHHHHHHHHHhCCCCcEEE---CCCCeEEccEEeHHHHHHHHHHHh
Confidence 99999999999999999999999998766543 334455555555 44445 779999999999999999999998
Q ss_pred cCCCCCCCCCceEEEeCCCCcccHHHHHHHHHHHhCCCccceeecC---CCCCCCCcccCChHHHHHhcCCCccCcHHHH
Q 012176 355 SGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRM---PRNGDVPYTHANVSLAYKDFGYKPTTDLAAG 431 (469)
Q Consensus 355 ~~~~~~~~~~~~iyni~~~~~vt~~el~~~i~~~~g~~~~~~~~~~---~~~~~~~~~~~d~~ka~~~LG~~p~~~l~~~ 431 (469)
++. ++.||+++++.+++.++++.+.+.+|.+.+...... -++++...+..|++|++++|||+|+++|+|+
T Consensus 234 ~~~-------~~~~ni~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~rp~~~~~~~~d~~k~~k~lG~~P~~~l~e~ 306 (321)
T d1rpna_ 234 QDK-------ADDYVVATGVTTTVRDMCQIAFEHVGLDYRDFLKIDPAFFRPAEVDVLLGNPAKAQRVLGWKPRTSLDEL 306 (321)
T ss_dssp SSS-------CCCEEECCSCEEEHHHHHHHHHHTTTCCGGGTEEECGGGCCSSCCCBCCBCTHHHHHHHCCCCCSCHHHH
T ss_pred cCC-------cCCceecccccceehhhhHHHHHHhCCCccceeecCCCCCCCCccCCccCCHHHHHHHHCCCcCCCHHHH
Confidence 763 278999999999999999999999998764433322 2356777788899999999999999999999
Q ss_pred HHHHHHHHHHHc
Q 012176 432 LRKFVKWYVSYY 443 (469)
Q Consensus 432 l~~~v~~~~~~~ 443 (469)
|+++++|+++..
T Consensus 307 i~~tv~~~l~~~ 318 (321)
T d1rpna_ 307 IRMMVEADLRRV 318 (321)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999998754
|
| >d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Probab=100.00 E-value=2.9e-45 Score=364.62 Aligned_cols=311 Identities=22% Similarity=0.317 Sum_probs=263.2
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCccE
Q 012176 117 NGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTH 196 (469)
Q Consensus 117 ~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~d~ 196 (469)
.+|+|||||||||||++|+++|+++|++|.++.+........ ..........+++++.+|++|.+.+.+++... |.
T Consensus 1 ~~mkILVTGgtGfIGs~lv~~L~~~g~~v~v~~~d~~~~~~~--~~~~~~~~~~~i~~~~~Di~d~~~~~~~~~~~--~~ 76 (346)
T d1oc2a_ 1 QFKNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAGN--KANLEAILGDRVELVVGDIADAELVDKLAAKA--DA 76 (346)
T ss_dssp CCSEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCTTCC--GGGTGGGCSSSEEEEECCTTCHHHHHHHHTTC--SE
T ss_pred CcCEEEEeCCCcHHHHHHHHHHHHCCCCeEEEEEeCCCcccc--HHHHHHhhcCCeEEEEccCCCHHHHHHHHhhh--hh
Confidence 368999999999999999999999999876665432111110 11112233458999999999999999999987 99
Q ss_pred EEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcCccccCCCC------------CCCCCCCCCCC
Q 012176 197 VLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNT------------QVPFSESHRTD 264 (469)
Q Consensus 197 Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS~~vyg~~~------------~~~~~E~~~~~ 264 (469)
|+|+|+......+..++...+++|+.|+.+++++|+..+. ++|++||+.+||... ...++|+++.
T Consensus 77 v~~~a~~~~~~~~~~~~~~~~~~N~~g~~nll~~~~~~~~--k~i~~ss~~vyg~~~~~~~~~~~~~~~~~~~~e~~~~- 153 (346)
T d1oc2a_ 77 IVHYAAESHNDNSLNDPSPFIHTNFIGTYTLLEAARKYDI--RFHHVSTDEVYGDLPLREDLPGHGEGPGEKFTAETNY- 153 (346)
T ss_dssp EEECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHHTC--EEEEEEEGGGGCCBCCGGGSTTTTCSTTSSBCTTSCC-
T ss_pred hhhhhhcccccchhhCcccceeeehHhHHhhhhhhccccc--cccccccceEecccCccccccccccCcccccccCCCC-
Confidence 9999999888777889999999999999999999999985 799999999997421 1244555555
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHhCCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceEecccHHH
Q 012176 265 QPASLYAATKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDD 344 (469)
Q Consensus 265 ~p~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~D 344 (469)
.|.+.|+.+|.++|.+++.+++.++++++++||++||||+......+..++..+..+.++.++ +++++.++|+|++|
T Consensus 154 ~p~s~Y~~sK~~~E~~~~~~~~~~~i~~~ilR~~~vyGp~~~~~~~~~~~i~~~~~~~~~~i~---~~g~~~r~~i~v~D 230 (346)
T d1oc2a_ 154 NPSSPYSSTKAASDLIVKAWVRSFGVKATISNCSNNYGPYQHIEKFIPRQITNILAGIKPKLY---GEGKNVRDWIHTND 230 (346)
T ss_dssp CCCSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEESTTCCTTSHHHHHHHHHHHTCCCEEE---TTSCCEEECEEHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHcCCCEEEEeecceeCCCCCccchhHHHHHHHHcCCceeEe---CCCCccccccchhh
Confidence 788999999999999999999999999999999999999988888888999999999999888 78999999999999
Q ss_pred HHHHHHHHhccCCCCCCCCCceEEEeCCCCcccHHHHHHHHHHHhCCCccceeecCCCCCCCCcccCChHHHHHhcCCCc
Q 012176 345 VVKGCVGATGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRNGDVPYTHANVSLAYKDFGYKP 424 (469)
Q Consensus 345 va~~~~~~~~~~~~~~~~~~~~iyni~~~~~vt~~el~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~d~~ka~~~LG~~p 424 (469)
+|++++.++.++ ..++.||+++++.+++.++++.+.+.++.+.........+.++...+.+|++|++++|||+|
T Consensus 231 ~a~a~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~LGw~P 304 (346)
T d1oc2a_ 231 HSTGVWAILTKG------RMGETYLIGADGEKNNKEVLELILEKMGQPKDAYDHVTDRAGHDLRYAIDASKLRDELGWTP 304 (346)
T ss_dssp HHHHHHHHHHHC------CTTCEEEECCSCEEEHHHHHHHHHHHTTCCTTCSEEECCCTTCCCBCCBCCHHHHHHHCCCC
T ss_pred HHHHHHHHHhhc------ccCccccccccccccchHHHHHHHHHhCCCCcceEECCCCCCCCceeeeCHHHHHHHHCCCC
Confidence 999999988775 23489999999999999999999999998765554444556666777899999999999999
Q ss_pred cC-cHHHHHHHHHHHHHHHc
Q 012176 425 TT-DLAAGLRKFVKWYVSYY 443 (469)
Q Consensus 425 ~~-~l~~~l~~~v~~~~~~~ 443 (469)
++ +|+++|+++++||+++.
T Consensus 305 ~~t~l~e~i~~ti~w~~~n~ 324 (346)
T d1oc2a_ 305 QFTDFSEGLEETIQWYTDNQ 324 (346)
T ss_dssp SCCCHHHHHHHHHHHHHHTH
T ss_pred cCCCHHHHHHHHHHHHHHHH
Confidence 86 69999999999999854
|
| >d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Polymyxin resistance protein ArnA (PrmI) species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.6e-44 Score=358.37 Aligned_cols=309 Identities=22% Similarity=0.337 Sum_probs=255.6
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCC-cEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHH-hhccCCccE
Q 012176 119 MTVLVTGAAGFVGSHCSLALKKRGD-GVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTK-LFDVVPFTH 196 (469)
Q Consensus 119 ~~VlVtGatG~IG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~-~~~~~~~d~ 196 (469)
|+||||||+||||++|+++|+++|+ +|+++++.... .......++++++.+|+++.+.+.+ +++++ |+
T Consensus 1 MKILITG~tGfiG~~l~~~Ll~~g~~~V~~ld~~~~~--------~~~~~~~~~~~~i~~Di~~~~~~~~~~~~~~--d~ 70 (342)
T d2blla1 1 MRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDA--------ISRFLNHPHFHFVEGDISIHSEWIEYHVKKC--DV 70 (342)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHSTTCEEEEEESCCGG--------GGGGTTCTTEEEEECCTTTCSHHHHHHHHHC--SE
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCCcc--------hhhhccCCCeEEEECccCChHHHHHHHHhCC--Cc
Confidence 7899999999999999999999995 89999885431 1222345689999999988766554 66655 99
Q ss_pred EEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcCccccCCCCCCCCCCCC------CCCCCCChH
Q 012176 197 VLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESH------RTDQPASLY 270 (469)
Q Consensus 197 Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~------~~~~p~~~Y 270 (469)
|||+|+.........++...+..|+.|+.+++++|.+.+. +++++||..+|+........|.. +...|.+.|
T Consensus 71 Vih~a~~~~~~~~~~~~~~~~~~nv~gt~~ll~~~~~~~~--~~~~~ss~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~Y 148 (342)
T d2blla1 71 VLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRK--RIIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIY 148 (342)
T ss_dssp EEECBCCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTTC--EEEEECCGGGGBTCCCSSBCTTTCCCBCCCTTCGGGHH
T ss_pred cccccccccccccccCCccccccccccccccccccccccc--cccccccccccccccccccccccccccccccCCCcchh
Confidence 9999999888777788899999999999999999999986 68899999999977665554432 223566889
Q ss_pred HHHHHHHHHHHHHHHHHhCCcEEEEeecceecCCCCC--------CChHHHHHHHHHcCCceEEEeeCCCCcceEecccH
Q 012176 271 AATKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRP--------DMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYI 342 (469)
Q Consensus 271 ~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~Gp~~~~--------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v 342 (469)
+.+|.++|.++..+++.+|++++++|++.+|||+... ......++..++.|+++.++ +++++.++|+|+
T Consensus 149 ~~sK~~~E~~~~~~~~~~~~~~~i~r~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~g~~~r~~i~v 225 (342)
T d2blla1 149 SVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLI---DGGKQKRCFTDI 225 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCEEEEEECSEECSSCCCTTCSBSCBCHHHHHHHHHHHHTCCEEEG---GGSCCEEECEEH
T ss_pred hhcccchhhhhhhhhcccCceeEEeeccccccccccccccccccccccchHHHHHHHhCCCcccc---CCCCeeeeeccc
Confidence 9999999999999999999999999999999986433 23567899999999999988 779999999999
Q ss_pred HHHHHHHHHHhccCCCCCCCCCceEEEeCCCC-cccHHHHHHHHHHHhCCCccceeecCCC--------------CCCCC
Q 012176 343 DDVVKGCVGATGSGGKKRGPAQLRVYNLGNTS-PVPVGRLVSILENLLNTKAKKHVIRMPR--------------NGDVP 407 (469)
Q Consensus 343 ~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~-~vt~~el~~~i~~~~g~~~~~~~~~~~~--------------~~~~~ 407 (469)
+|+|++++.+++++.. ...+++||+++++ ++|+.|+++.+.+.+|........+... ..++.
T Consensus 226 ~D~~~a~~~~~~~~~~---~~~g~~~Nig~~~~~~t~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (342)
T d2blla1 226 RDGIEALYRIIENAGN---RCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGFRVVESSSYYGKGYQDVE 302 (342)
T ss_dssp HHHHHHHHHHHHCGGG---TTTTEEEEECCTTSEEEHHHHHHHHHHHHHTCTTGGGSCCCCCEEEC------------CC
T ss_pred ccccceeeeehhhccc---cCCCeEEEEecccchhHHHHHHHHHHHHhCCCccccccCcccccceecccccccccccccc
Confidence 9999999999987532 2446999998765 5899999999999999877665544221 12345
Q ss_pred cccCChHHHHHhcCCCccCcHHHHHHHHHHHHHHHcCC
Q 012176 408 YTHANVSLAYKDFGYKPTTDLAAGLRKFVKWYVSYYGI 445 (469)
Q Consensus 408 ~~~~d~~ka~~~LG~~p~~~l~~~l~~~v~~~~~~~~~ 445 (469)
+..+|++|++++|||+|+++++|+|+++++||+++.+.
T Consensus 303 ~~~~d~~k~~~~lgw~P~~sleegl~~ti~~y~~~~~~ 340 (342)
T d2blla1 303 HRKPSIRNAHRCLDWEPKIDMQETIDETLDFFLRTVDL 340 (342)
T ss_dssp CCCBCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHSCT
T ss_pred ccccCHHHHHHHHCCCcCCCHHHHHHHHHHHHHhCcCC
Confidence 56789999999999999999999999999999988753
|
| >d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.1e-43 Score=352.92 Aligned_cols=321 Identities=27% Similarity=0.403 Sum_probs=265.1
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCCh----hHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCc
Q 012176 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDP----SLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPF 194 (469)
Q Consensus 119 ~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~----~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~ 194 (469)
||||||||+||||++|+++|+++|++|++++|....... .............++.++.+|++|.+.+.+++.+..+
T Consensus 3 kKILITG~tGfIGs~lv~~Ll~~g~~V~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~~~ 82 (346)
T d1ek6a_ 3 EKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEFEEMDILDQGALQRLFKKYSF 82 (346)
T ss_dssp SEEEEETTTSHHHHHHHHHHHHTTCCEEEEECSSSSCBCSSSSBHHHHHHHHHHTCCCEEEECCTTCHHHHHHHHHHCCE
T ss_pred CeEEEECCCcHHHHHHHHHHHHCcCEEEEEECCCccccccccchHHHHHHHHhcCCCcEEEEeecccccccccccccccc
Confidence 689999999999999999999999999999864332211 1111122233456899999999999999999999988
Q ss_pred cEEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcCccccCCCCCCCCCCCCCCCCCCChHHHHH
Q 012176 195 THVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATK 274 (469)
Q Consensus 195 d~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y~~sK 274 (469)
++++|+||..+...+..++...++.|+.|+.+++++|++.+++ +|||+||+.+|+........++.....+.++|+.+|
T Consensus 83 ~~i~h~Aa~~~~~~~~~~p~~~~~~Nv~gt~~l~~~~~~~~v~-~~i~~ss~~~~~~~~~~~~~~~~~~~~~~~~Y~~~k 161 (346)
T d1ek6a_ 83 MAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKAHGVK-NLVFSSSATVYGNPQYLPLDEAHPTGGCTNPYGKSK 161 (346)
T ss_dssp EEEEECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCC-EEEEEEEGGGGCSCSSSSBCTTSCCCCCSSHHHHHH
T ss_pred ccccccccccCcHhhHhCHHHHHHhhhcccccccchhhhcCcc-cccccccceeeeccccccccccccccccCChHHHHH
Confidence 9999999998888888899999999999999999999999998 999999999999887666665555557889999999
Q ss_pred HHHHHHHHHHHHH-hCCcEEEEeecceecCCCC----------CCChHHHHHHHHH-cCCceEEEee---CCCCcceEec
Q 012176 275 KAGEEIAHTYNHI-YGLALTGLRFFTVYGPWGR----------PDMAYFFFTKDIL-QGKTIDVYKT---QDDREVARDF 339 (469)
Q Consensus 275 ~~~E~~~~~~~~~-~gi~~~ilRp~~v~Gp~~~----------~~~~~~~~~~~~~-~g~~~~~~~~---~~~~~~~~~~ 339 (469)
..+|..+.++++. .+++.+++||+.+|||... .+..++.++..+. ++.++.+++. ..++.+.+||
T Consensus 162 ~~~e~~~~~~~~~~~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~g~~~~~~~g~~~Rdf 241 (346)
T d1ek6a_ 162 FFIEEMIRDLCQADKTWNAVLLRYFNPTGAHASGCIGEDPQGIPNNLMPYVSQVAIGRREALNVFGNDYDTEDGTGVRDY 241 (346)
T ss_dssp HHHHHHHHHHHHHCTTCEEEEEEECEEECCCTTSSCCCCCSSSCCSHHHHHHHHHHTSSSCEEEECSCSSSSSSSCEECE
T ss_pred HHHHHHHHHHHHhccCCceEEEeecceeccCCCCCcCccccccHHHHHHHHHHHHHcCCCcEEEcCCcccCCCCCeeEeE
Confidence 9999999998875 5899999999999998542 2334555555443 4667777642 1357788999
Q ss_pred ccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCCcccHHHHHHHHHHHhCCCccceeecCCCCCCCCcccCChHHHHHh
Q 012176 340 TYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRNGDVPYTHANVSLAYKD 419 (469)
Q Consensus 340 v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~~vt~~el~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~d~~ka~~~ 419 (469)
+|++|+|.++..++..... ...+++|||++++.+++.|+++.+.+.+|.+.+....+. ++++.....+|.+|++++
T Consensus 242 i~v~D~a~~~~~~~~~~~~---~~~~~i~Ni~~~~~~s~~dl~~~i~~~~~~~~~~~~~~~-~~~e~~~~~~d~~k~~~~ 317 (346)
T d1ek6a_ 242 IHVVDLAKGHIAALRKLKE---QCGCRIYNLGTGTGYSVLQMVQAMEKASGKKIPYKVVAR-REGDVAACYANPSLAQEE 317 (346)
T ss_dssp EEHHHHHHHHHHHHHHHTT---TCCEEEEEECCSCCEEHHHHHHHHHHHHCSCCCEEEECC-CTTCCSEECBCCHHHHHT
T ss_pred EEEEeccchhhhhcccccc---ccCceEEEeCCCCcccHHHHHHHHHHHhCCCCCeEECCC-CCCCCCEeeECHHHHHHH
Confidence 9999999999988665432 234589999999999999999999999999888776554 577888889999999999
Q ss_pred cCCCccCcHHHHHHHHHHHHHHHcC
Q 012176 420 FGYKPTTDLAAGLRKFVKWYVSYYG 444 (469)
Q Consensus 420 LG~~p~~~l~~~l~~~v~~~~~~~~ 444 (469)
|||+|+++++|+|+++++||+++.+
T Consensus 318 lgw~p~~slee~I~~~i~w~~~n~~ 342 (346)
T d1ek6a_ 318 LGWTAALGLDRMCEDLWRWQKQNPS 342 (346)
T ss_dssp TCCCCCCCHHHHHHHHHHHHHHCTT
T ss_pred HCCCcCCCHHHHHHHHHHHHHhCHh
Confidence 9999999999999999999987654
|
| >d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=3.1e-44 Score=356.66 Aligned_cols=315 Identities=19% Similarity=0.188 Sum_probs=260.1
Q ss_pred CEE-EEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHH---HHHhhccCCeEEEEecCCCHHHHHHhhccCCc
Q 012176 119 MTV-LVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRA---RQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPF 194 (469)
Q Consensus 119 ~~V-lVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~---~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~ 194 (469)
|+| |||||+||||++|+++|+++||+|++++|............ ........+++++.+|++|.+.+.+++....+
T Consensus 1 kKI~LVTG~tGfIG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~ 80 (347)
T d1t2aa_ 1 RNVALITGITGQDGSYLAEFLLEKGYEVHGIVRRSSSFNTGRIEHLYKNPQAHIEGNMKLHYGDLTDSTCLVKIINEVKP 80 (347)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCTTTGGGC---------CEEEEECCTTCHHHHHHHHHHHCC
T ss_pred CCEEEEecCCcHHHHHHHHHHHHCcCEEEEEECCCcccchhhHHHHhhchhhhccCCcEEEEeecCCchhhHHHHhhccc
Confidence 467 99999999999999999999999999999765332211000 01111124899999999999999999999889
Q ss_pred cEEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCC--CeEEEEcCccccCCCCCCCCCCCCCCCCCCChHHH
Q 012176 195 THVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQ--PSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAA 272 (469)
Q Consensus 195 d~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~--~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y~~ 272 (469)
++|+|+++.........++...+++|+.||.+++++|++++.. .+|||+||++|||.....+++|+++. .|.+.|+.
T Consensus 81 ~~v~~~~a~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~~~i~~SS~~vyg~~~~~~~~E~~~~-~P~~~Yg~ 159 (347)
T d1t2aa_ 81 TEIYNLGAQSHVKISFDLAEYTADVDGVGTLRLLDAVKTCGLINSVKFYQASTSELYGKVQEIPQKETTPF-YPRSPYGA 159 (347)
T ss_dssp SEEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEEEGGGTCSCSSSSBCTTSCC-CCCSHHHH
T ss_pred ceeeeeeeccccchhhccchhhhhhHHHHHHHHHHHHHHcCCCCCcEEEEecchheecCCCCCCCCCCCCC-CCCCHHHH
Confidence 9999999988888888888999999999999999999998764 38999999999998888899999987 79999999
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEeecceecCCCCCCChHH----HHHHHHHcCCceEEEeeCCCCcceEecccHHHHHHH
Q 012176 273 TKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYF----FFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKG 348 (469)
Q Consensus 273 sK~~~E~~~~~~~~~~gi~~~ilRp~~v~Gp~~~~~~~~~----~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~~ 348 (469)
+|.++|+++..+.+.++++++++||++||||+........ .+......+.++.++ +++++.++|+|++|++++
T Consensus 160 sK~~aE~~~~~~~~~~~~~~~ilr~~~vyGp~~~~~~~~~~~~~~i~~~~~~~~~~~~~---g~g~~~r~~i~v~D~~~a 236 (347)
T d1t2aa_ 160 AKLYAYWIVVNFREAYNLFAVNGILFNHESPRRGANFVTRKISRSVAKIYLGQLECFSL---GNLDAKRDWGHAKDYVEA 236 (347)
T ss_dssp HHHHHHHHHHHHHHHHCCEEEEEEECCEECTTSCTTSHHHHHHHHHHHHHHTSCSCEEE---SCTTCEECCEEHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEEecceeCCCCCCCccccccceeeehhhcCCcceeec---CCCcceeeeeEecHHHHH
Confidence 9999999999999999999999999999999766554433 344555567777777 779999999999999999
Q ss_pred HHHHhccCCCCCCCCCceEEEeCCCCcccHHHHHHHHHHHhCCCccceeecC--------------------CCCCCCCc
Q 012176 349 CVGATGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRM--------------------PRNGDVPY 408 (469)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~iyni~~~~~vt~~el~~~i~~~~g~~~~~~~~~~--------------------~~~~~~~~ 408 (469)
++.++++... +.|+++.....++.+..+.+...+++.......+. -++++...
T Consensus 237 ~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rp~~~~~ 309 (347)
T d1t2aa_ 237 MWLMLQNDEP-------EDFVIATGEVHSVREFVEKSFLHIGKTIVWEGKNENEVGRCKETGKVHVTVDLKYYRPTEVDF 309 (347)
T ss_dssp HHHHHHSSSC-------CCEEECCSCCEEHHHHHHHHHHHTTCCEEEESCGGGCEEEETTTCCEEEEECGGGSCSSCCCB
T ss_pred HHHHhhcCCC-------ccceeccccccccchhhhhhhhhhcceeeecccchhhhhhhhhcCCceeeecccCCCCCCcCE
Confidence 9999987632 67899999999999999999999998653322211 12345556
Q ss_pred ccCChHHHHHhcCCCccCcHHHHHHHHHHHHHHHcC
Q 012176 409 THANVSLAYKDFGYKPTTDLAAGLRKFVKWYVSYYG 444 (469)
Q Consensus 409 ~~~d~~ka~~~LG~~p~~~l~~~l~~~v~~~~~~~~ 444 (469)
+.+|++|++++|||+|+++|+|+|+++++|.++.++
T Consensus 310 ~~~d~skak~~Lgw~P~~sl~e~i~~~I~~~~~~~k 345 (347)
T d1t2aa_ 310 LQGDCTKAKQKLNWKPRVAFDELVREMVHADVELMR 345 (347)
T ss_dssp CCBCCHHHHHHHCCCCCSCHHHHHHHHHHHHHHHHH
T ss_pred eeECHHHHHHHHCCCcCCCHHHHHHHHHHHHHHHHh
Confidence 678999999999999999999999999998777654
|
| >d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose-3', 5'-epimerase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=100.00 E-value=6.4e-44 Score=356.95 Aligned_cols=306 Identities=24% Similarity=0.307 Sum_probs=256.8
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCcc
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFT 195 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~d 195 (469)
.+.|+||||||+||||++|+++|+++||+|++++|....... .......+..+|+.|.+.+.++++++ |
T Consensus 13 ~~nMKILVTGgsGfIGs~lv~~L~~~g~~V~~~d~~~~~~~~---------~~~~~~~~~~~D~~~~~~~~~~~~~~--d 81 (363)
T d2c5aa1 13 SENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMT---------EDMFCDEFHLVDLRVMENCLKVTEGV--D 81 (363)
T ss_dssp TSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCSSSC---------GGGTCSEEEECCTTSHHHHHHHHTTC--S
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCCccchh---------hhcccCcEEEeechhHHHHHHHhhcC--C
Confidence 467899999999999999999999999999999986543211 11236688899999999999999877 9
Q ss_pred EEEEcccccChh-hhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcCccccCCCCCCCCCCCC------CCCCCCC
Q 012176 196 HVLHLAAQAGVR-YAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESH------RTDQPAS 268 (469)
Q Consensus 196 ~Vih~Aa~~~~~-~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~------~~~~p~~ 268 (469)
+|||+|+..... .....+......|+.++.+++++|++.+++ +||++||..+|+.....+.+|+. .+..|.+
T Consensus 82 ~Vih~a~~~~~~~~~~~~~~~~~~~n~~gt~~ll~~~~~~~vk-~~i~~SS~~~~~~~~~~~~~~~~~~~~e~~~~~p~~ 160 (363)
T d2c5aa1 82 HVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARINGIK-RFFYASSACIYPEFKQLETTNVSLKESDAWPAEPQD 160 (363)
T ss_dssp EEEECCCCCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHTTCS-EEEEEEEGGGSCGGGSSSSSSCEECGGGGSSBCCSS
T ss_pred eEeecccccccccccccccccccccccchhhHHHHhHHhhCcc-ccccccccccccccccccccccccccccCCcCCCCC
Confidence 999999875543 335777889999999999999999999997 99999999999977665554432 2337889
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCcEEEEeecceecCCCCCC-----ChHHHHHHHHHcCCceEEEeeCCCCcceEecccHH
Q 012176 269 LYAATKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPD-----MAYFFFTKDILQGKTIDVYKTQDDREVARDFTYID 343 (469)
Q Consensus 269 ~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~Gp~~~~~-----~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~ 343 (469)
.|+.+|.++|.+++.+.+++|++++++||++||||++... .....+........+...+ +++.+.++|+|++
T Consensus 161 ~Yg~sK~~~E~~~~~~~~~~gl~~~ilR~~~vyG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---g~g~~~rd~i~v~ 237 (363)
T d2c5aa1 161 AFGLEKLATEELCKHYNKDFGIECRIGRFHNIYGPFGTWKGGREKAPAAFCRKAQTSTDRFEMW---GDGLQTRSFTFID 237 (363)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTSCCSSSCCCHHHHHHHHHHHCSSCEEEE---SCSCCEECCEEHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCEEEEEeeeEeccCCccccccccccccccccccccccccccc---CCCCeEEEEeehh
Confidence 9999999999999999999999999999999999976532 2233444555667777777 7789999999999
Q ss_pred HHHHHHHHHhccCCCCCCCCCceEEEeCCCCcccHHHHHHHHHHHhCCCccceeecCCCCCCCCcccCChHHHHHhcCCC
Q 012176 344 DVVKGCVGATGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRNGDVPYTHANVSLAYKDFGYK 423 (469)
Q Consensus 344 Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~~vt~~el~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~d~~ka~~~LG~~ 423 (469)
|++++++.++++.. +++||++++..+++.|+++.+.+.+|.+..+...+. ..+.....+|++|++++|||+
T Consensus 238 D~~~~~~~~~~~~~-------~~~~ni~~~~~~s~~~l~~~i~~~~g~~~~i~~~~~--~~~~~~~~~d~ska~~~LGw~ 308 (363)
T d2c5aa1 238 ECVEGVLRLTKSDF-------REPVNIGSDEMVSMNEMAEMVLSFEEKKLPIHHIPG--PEGVRGRNSDNNLIKEKLGWA 308 (363)
T ss_dssp HHHHHHHHHHHSSC-------CSCEEECCCCCEEHHHHHHHHHHTTTCCCCEEEECC--CCCCSBCEECCHHHHHHHSCC
T ss_pred HHHHHHHHHHhCCC-------CCeEEEecCCcccHHHHHHHHHHHhCCCCceEeCCC--CCCccccccCHHHHHHHhCCC
Confidence 99999999987642 389999999999999999999999999887766654 345666778999999999999
Q ss_pred ccCcHHHHHHHHHHHHHHHcCC
Q 012176 424 PTTDLAAGLRKFVKWYVSYYGI 445 (469)
Q Consensus 424 p~~~l~~~l~~~v~~~~~~~~~ 445 (469)
|+++++++|+++++||+++++.
T Consensus 309 p~~sleegi~~ti~w~~~~~~~ 330 (363)
T d2c5aa1 309 PNMRLKEGLRITYFWIKEQIEK 330 (363)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999998753
|
| >d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.5e-43 Score=352.41 Aligned_cols=320 Identities=26% Similarity=0.347 Sum_probs=253.8
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCccEEE
Q 012176 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTHVL 198 (469)
Q Consensus 119 ~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~d~Vi 198 (469)
|+||||||+||||++|+++|+++|++|+++++............ ......+++++.+|++|.+.++++++..++|+||
T Consensus 2 K~ILVTGatGfIG~~lv~~Ll~~g~~V~~~d~~~~~~~~~~~~~--~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~Vi 79 (347)
T d1z45a2 2 KIVLVTGGAGYIGSHTVVELIENGYDCVVADNLSNSTYDSVARL--EVLTKHHIPFYEVDLCDRKGLEKVFKEYKIDSVI 79 (347)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCTHHHHHH--HHHHTSCCCEEECCTTCHHHHHHHHHHSCCCEEE
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCcCeEEEEECCCCcchhHHHhH--HhhcccCCeEEEeecCCHHHHHHHHhccCCCEEE
Confidence 57999999999999999999999999999987655443333222 2333458999999999999999999988899999
Q ss_pred EcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcCccccCCCCC----CCCCCCCCCCCCCChHHHHH
Q 012176 199 HLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQ----VPFSESHRTDQPASLYAATK 274 (469)
Q Consensus 199 h~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS~~vyg~~~~----~~~~E~~~~~~p~~~Y~~sK 274 (469)
|+||...+.....++..+..+|+.++.+++++|++.+++ +||++||..|||.... .+++|+.+. .|.+.|+.+|
T Consensus 80 hlAa~~~~~~~~~~~~~~~~~N~~~t~~ll~~~~~~~i~-~~i~~SS~~vyg~~~~~~~~~~~~e~~~~-~p~~~Y~~sK 157 (347)
T d1z45a2 80 HFAGLKAVGESTQIPLRYYHNNILGTVVLLELMQQYNVS-KFVFSSSATVYGDATRFPNMIPIPEECPL-GPTNPYGHTK 157 (347)
T ss_dssp ECCSCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTCC-EEEEEEEGGGGCCGGGSTTCCSBCTTSCC-CCCSHHHHHH
T ss_pred EccccccccccccCcccccccchhhhHHHHHHHHhcccc-eEEeecceeeecCcccCCCCCccccccCC-CCCChhHhHH
Confidence 999998888888899999999999999999999999987 9999999999986643 356666655 7889999999
Q ss_pred HHHHHHHHHHHHH--hCCcEEEEeecceecCCC----------CCCChHHHHHHHHH-cCCceEEEee---CCCCcceEe
Q 012176 275 KAGEEIAHTYNHI--YGLALTGLRFFTVYGPWG----------RPDMAYFFFTKDIL-QGKTIDVYKT---QDDREVARD 338 (469)
Q Consensus 275 ~~~E~~~~~~~~~--~gi~~~ilRp~~v~Gp~~----------~~~~~~~~~~~~~~-~g~~~~~~~~---~~~~~~~~~ 338 (469)
.++|.+++++.+. ++++++++||++|||+.. .++..++.++..+. .+.++.+++. ..++...+|
T Consensus 158 ~~~E~~~~~~~~~~~~~~~~~~lR~~~v~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~i~g~~~~~~~~~~~~d 237 (347)
T d1z45a2 158 YAIENILNDLYNSDKKSWKFAILRYFNPIGAHPSGLIGEDPLGIPNNLLPYMAQVAVGRREKLYIFGDDYDSRDGTPIRD 237 (347)
T ss_dssp HHHHHHHHHHHHHSTTSCEEEEEEECEEECCCTTSSCCCCCSSSCCSHHHHHHHHHTTSSSCCCCC------CCSSCEEC
T ss_pred HHHHHHHHHHHHhhccCCcEEEEeecceEeecCCCccCCCccccHHHHHHHHHHHHhcCCCCeEEeCCCccccCCceeee
Confidence 9999999998754 589999999999999743 12344555555444 3455655521 023456788
Q ss_pred cccHHHHHHHHHHHhccCCCC-CCCCCceEEEeCCCCcccHHHHHHHHHHHhCCCccceeecCCCCCCCCcccCChHHHH
Q 012176 339 FTYIDDVVKGCVGATGSGGKK-RGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRNGDVPYTHANVSLAY 417 (469)
Q Consensus 339 ~v~v~Dva~~~~~~~~~~~~~-~~~~~~~iyni~~~~~vt~~el~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~d~~ka~ 417 (469)
++++.|++.+++.++...... .....+++||+++++++|+.|+++.+.+.+|.+.++...+. +.++.....+|++|++
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ni~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~d~sk~~ 316 (347)
T d1z45a2 238 YIHVVDLAKGHIAALQYLEAYNENEGLCREWNLGSGKGSTVFEVYHAFCKASGIDLPYKVTGR-RAGDVLNLTAKPDRAK 316 (347)
T ss_dssp EEEHHHHHHHHHHHHHHHHHSCTTCCEEEEEEESCSCCEEHHHHHHHHHHHHTCCCCC----------CCCCCBCCHHHH
T ss_pred eeeeecccccccccccccccccccccccccceecCCCcccHHHHHHHHHHHHCCCCceEeCCC-CCCCCCEeeECHHHHH
Confidence 999999999988886542111 11234699999999999999999999999999887765554 3567777889999999
Q ss_pred HhcCCCccCcHHHHHHHHHHHHHHHc
Q 012176 418 KDFGYKPTTDLAAGLRKFVKWYVSYY 443 (469)
Q Consensus 418 ~~LG~~p~~~l~~~l~~~v~~~~~~~ 443 (469)
++|||+|+++|+|+|+++++||+++.
T Consensus 317 ~~lGw~p~~~lee~i~~ti~w~~~np 342 (347)
T d1z45a2 317 RELKWQTELQVEDSCKDLWKWTTENP 342 (347)
T ss_dssp HHTCCCCCCCHHHHHHHHHHHHHHCT
T ss_pred HHHCCCCCCCHHHHHHHHHHHHHhCh
Confidence 99999999999999999999998874
|
| >d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sulfolipid biosynthesis protein SQD1 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=100.00 E-value=9.1e-43 Score=352.36 Aligned_cols=334 Identities=22% Similarity=0.247 Sum_probs=256.7
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCC-------------CCCChhHH-HHHHHhhccCCeEEEEecCCCHH
Q 012176 118 GMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFN-------------SYYDPSLK-RARQKLLQKHQVFIVEGDLNDAP 183 (469)
Q Consensus 118 ~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~-------------~~~~~~~~-~~~~~~~~~~~v~~v~~Dl~d~~ 183 (469)
||+||||||+||||++|+++|++.||+|+++|... .+...... ..........+++++.+|++|.+
T Consensus 1 g~kILVTGatGfiG~~lv~~Ll~~g~~V~~iDnl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~Dl~d~~ 80 (393)
T d1i24a_ 1 GSRVMVIGGDGYCGWATALHLSKKNYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKALTGKSIELYVGDICDFE 80 (393)
T ss_dssp -CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTCCCSSCCCCHHHHHHHHHHHHCCCCEEEESCTTSHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCcCEEEEEecCCcccccccccccccccccchHHHHHHHHhhcCCCcEEEEccCCCHH
Confidence 68999999999999999999999999999997311 01111111 11112233468999999999999
Q ss_pred HHHHhhccCCccEEEEcccccChhhhccC---hHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcCccccCCCCCCCCCCC
Q 012176 184 LLTKLFDVVPFTHVLHLAAQAGVRYAMQN---PQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSES 260 (469)
Q Consensus 184 ~l~~~~~~~~~d~Vih~Aa~~~~~~~~~~---~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS~~vyg~~~~~~~~E~ 260 (469)
.++++++++++|+|||+||......+..+ +..+++.|+.|+.+++++|++.+.+.++++.||..+|+.... +..|.
T Consensus 81 ~l~~~~~~~~~d~ViHlAa~~~~~~s~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~~~~i~~ss~~~~~~~~~-~~~~~ 159 (393)
T d1i24a_ 81 FLAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVYTQHNNVIGTLNVLFAIKEFGEECHLVKLGTMGEYGTPNI-DIEEG 159 (393)
T ss_dssp HHHHHHHHHCCSEEEECCSCCCHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEECCGGGGCCCSS-CBCSS
T ss_pred HHHHHHHhhcchheeccccccccccccccccccccccccccccccHHHHHHHHhccccceeecccccccccccc-ccccc
Confidence 99999999999999999998776665555 346789999999999999999998878999999999875432 22211
Q ss_pred -------------CCCCCCCChHHHHHHHHHHHHHHHHHHhCCcEEEEeecceecCCCCCC-----------------Ch
Q 012176 261 -------------HRTDQPASLYAATKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPD-----------------MA 310 (469)
Q Consensus 261 -------------~~~~~p~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~Gp~~~~~-----------------~~ 310 (469)
..+..|.+.|+.+|.++|.++..++++++++++++||++||||+.... ..
T Consensus 160 ~~~~~~~~~~~~~~~~~~p~~~Y~~sK~~aE~~~~~~~~~~~l~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (393)
T d1i24a_ 160 YITITHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVKTDETEMHEELRNRLDYDAVFGTA 239 (393)
T ss_dssp EEEEEETTEEEEEECCCCCCSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECSCCTTGGGSGGGCCCCCCSTTTCCH
T ss_pred cccccccccccccccccccccHHHHHhhhhcccccccccccceeeeecccccccCCCccccccccccccccccccccccc
Confidence 113367889999999999999999999999999999999999975432 34
Q ss_pred HHHHHHHHHcCCceEEEeeCCCCcceEecccHHHHHHHHHHHhccCCCCCCCCCce--EEEeCCCCcccHHHHHHHHHHH
Q 012176 311 YFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGATGSGGKKRGPAQLR--VYNLGNTSPVPVGRLVSILENL 388 (469)
Q Consensus 311 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~--iyni~~~~~vt~~el~~~i~~~ 388 (469)
+..++..+..|+++.++ |++.+.+||+||+|+|++++.++++... .+. ++|. +++.+++.|+++.+.++
T Consensus 240 i~~~~~~~~~~~~~~i~---g~~~~~rd~v~v~D~~~a~~~~~~~~~~-----~g~~~~~~~-~~~~~si~el~~~i~~~ 310 (393)
T d1i24a_ 240 LNRFCVQAAVGHPLTVY---GKGGQTRGYLDIRDTVQCVEIAIANPAK-----AGEFRVFNQ-FTEQFSVNELASLVTKA 310 (393)
T ss_dssp HHHHHHHHHHTCCEEEE---TTSCCEEEEEEHHHHHHHHHHHHHSCCC-----TTCEEEEEE-CSEEEEHHHHHHHHHHH
T ss_pred hhhhhHHhhcCCeeEEe---eecccccccccccchHHHHHHHHHhhcc-----cceeeeecC-CCCeeEHHHHHHHHHHH
Confidence 67888999999999999 8899999999999999999999987632 223 3333 44679999999999887
Q ss_pred h---CCCccceeecCCC-CCCCCcccCChHHHHHhcCCCccCcHHHHHHHHHHHHHHHcCCCCcccccCCcccccccc
Q 012176 389 L---NTKAKKHVIRMPR-NGDVPYTHANVSLAYKDFGYKPTTDLAAGLRKFVKWYVSYYGIQPRVKKENGFSTTTSTI 462 (469)
Q Consensus 389 ~---g~~~~~~~~~~~~-~~~~~~~~~d~~ka~~~LG~~p~~~l~~~l~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (469)
. +.+......+.++ ..+..++..|++|++ +|||+|+++++++++++++|++++...-...+.....+|+.-.+
T Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~-~LGw~P~~~~~~~i~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~ 387 (393)
T d1i24a_ 311 GSKLGLDVKKMTVPNPRVEAEEHYYNAKHTKLM-ELGLEPHYLSDSLLDSLLNFAVQFKDRVDTKQIMPSVSWKKIGV 387 (393)
T ss_dssp HHTTTCCCCEEEECCSSCSCSSCCCCBCCCHHH-HTTCCCCCCCHHHHHHHHHHHHHTGGGCCGGGSSCCCCTTTCCS
T ss_pred HHhhCCCcceeeccCCCCCCCccEecCCHHHHH-HcCCccccCHHHHHHHHHHHHHHHHHhhhHhhcCCCCCCcccch
Confidence 5 4444555444443 456667788999997 59999999999999999999988865332222333444544433
|
| >d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=100.00 E-value=6.6e-43 Score=345.71 Aligned_cols=317 Identities=23% Similarity=0.219 Sum_probs=255.0
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhH-HH--HHHHhhccCCeEEEEecCCCHHHHHHhhccCCc
Q 012176 118 GMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSL-KR--ARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPF 194 (469)
Q Consensus 118 ~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~-~~--~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~ 194 (469)
+|+|||||||||||+||+++|+++||+|++++|......... .. ..........++++.+|+++.+.+.+.++..++
T Consensus 1 ~k~~LVTGatGfiG~~lv~~Ll~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~~~~~~~~~~~~~~~ 80 (339)
T d1n7ha_ 1 RKIALITGITGQDGSYLTEFLLGKGYEVHGLIRRSSNFNTQRINHIYIDPHNVNKALMKLHYADLTDASSLRRWIDVIKP 80 (339)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCTTTTTTC--------CCEEEEECCTTCHHHHHHHHHHHCC
T ss_pred CCEEEEeCCccHHHHHHHHHHHHCcCEEEEEECCCcccchhhhhhhhhhhhhccccceEEEEccccCHHHHHHHHhhhcc
Confidence 479999999999999999999999999999999654322111 00 011112345789999999999999999998899
Q ss_pred cEEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcC----CCCeEEEEcCccccCCCCCCCCCCCCCCCCCCChH
Q 012176 195 THVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVN----PQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLY 270 (469)
Q Consensus 195 d~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~----~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y 270 (469)
|+|||+||........+++....+.|+.++.+++++++... ...++++.||+.+|+... .+++|+++. .|.+.|
T Consensus 81 D~Vih~Aa~~~~~~~~~~p~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~ss~~~~~~~~-~~~~E~~~~-~p~~~Y 158 (339)
T d1n7ha_ 81 DEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRSHTIDSGRTVKYYQAGSSEMFGSTP-PPQSETTPF-HPRSPY 158 (339)
T ss_dssp SEEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHHHHHHCCCCEEEEEEEGGGGTTSC-SSBCTTSCC-CCCSHH
T ss_pred chhhhccccccccccccCccccccccccccchhhhhhhhcccccccceeeeecccceecccCC-CCCCCCCCC-CCcchh
Confidence 99999999987777778999999999999999999987532 223688888888876554 478888877 799999
Q ss_pred HHHHHHHHHHHHHHHHHhCCcEEEEeecceecCCCCCCChHHHHH---HHHH-cCCceEEEeeCCCCcceEecccHHHHH
Q 012176 271 AATKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFFT---KDIL-QGKTIDVYKTQDDREVARDFTYIDDVV 346 (469)
Q Consensus 271 ~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~Gp~~~~~~~~~~~~---~~~~-~g~~~~~~~~~~~~~~~~~~v~v~Dva 346 (469)
+.+|.++|.++..+++.++++++++||++||||+...+.....+. .... ...+..+. +++.+.++|+|++|+|
T Consensus 159 ~~sK~~~E~~~~~~~~~~~~~~~ilR~~~vyGp~~~~~~~~~~i~~~~~~~~~~~~~~~~~---g~~~~~rd~~~v~D~a 235 (339)
T d1n7ha_ 159 AASKCAAHWYTVNYREAYGLFACNGILFNHESPRRGENFVTRKITRALGRIKVGLQTKLFL---GNLQASRDWGFAGDYV 235 (339)
T ss_dssp HHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTSCTTSHHHHHHHHHHHHHHTSCCCEEE---SCTTCEEECEEHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhCCCEEEEEEccccCCCCCCCCCcchhhHHHHHHhcCCCCeEEe---CCCCccccceeeehHH
Confidence 999999999999999999999999999999999877665433332 3333 34444555 7799999999999999
Q ss_pred HHHHHHhccCCCCCCCCCceEEEeCCCCcccHHHHHHHHHHHhCCCccceeec---CCCCCCCCcccCChHHHHHhcCCC
Q 012176 347 KGCVGATGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIR---MPRNGDVPYTHANVSLAYKDFGYK 423 (469)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~iyni~~~~~vt~~el~~~i~~~~g~~~~~~~~~---~~~~~~~~~~~~d~~ka~~~LG~~ 423 (469)
++++.+++++.. ..+++..+...++.++++.+.+.+|.+....... ..++++...+..|++|++++|||+
T Consensus 236 ~~~~~~~~~~~~-------~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~d~~Kak~~LGw~ 308 (339)
T d1n7ha_ 236 EAMWLMLQQEKP-------DDYVVATEEGHTVEEFLDVSFGYLGLNWKDYVEIDQRYFRPAEVDNLQGDASKAKEVLGWK 308 (339)
T ss_dssp HHHHHHHTSSSC-------CEEEECCSCEEEHHHHHHHHHHHTTCCGGGTEEECGGGSCSSCCCBCCBCCHHHHHHHCCC
T ss_pred HHHHHHHhcCCC-------CccccccccccccchhhhhhhhhhhcccCceeeeccCCCCCCCCCeeeECHHHHHHHHCCC
Confidence 999999987632 5677777888999999999999999875433321 224566777888999999999999
Q ss_pred ccCcHHHHHHHHHHHHHHHcCCC
Q 012176 424 PTTDLAAGLRKFVKWYVSYYGIQ 446 (469)
Q Consensus 424 p~~~l~~~l~~~v~~~~~~~~~~ 446 (469)
|+++++++|+++++||++..+.+
T Consensus 309 P~~~le~gi~~ti~~~~~~~~~~ 331 (339)
T d1n7ha_ 309 PQVGFEKLVKMMVDEDLELAKRE 331 (339)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHhhh
Confidence 99999999999999999987643
|
| >d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Trypanosoma brucei [TaxId: 5691]
Probab=100.00 E-value=1e-41 Score=343.56 Aligned_cols=324 Identities=22% Similarity=0.341 Sum_probs=255.9
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHH-CCCcEEEEeCCCCCC-----ChhHHHHHHHh---------hccCCeEEEEecCCC
Q 012176 117 NGMTVLVTGAAGFVGSHCSLALKK-RGDGVLGLDNFNSYY-----DPSLKRARQKL---------LQKHQVFIVEGDLND 181 (469)
Q Consensus 117 ~~~~VlVtGatG~IG~~l~~~L~~-~G~~V~~~~r~~~~~-----~~~~~~~~~~~---------~~~~~v~~v~~Dl~d 181 (469)
+.|+||||||+||||++|+++|++ .|++|+++|+..... ........... .....+.++.+|++|
T Consensus 1 ~~MKVLITG~tGfIGs~lv~~LL~~~~~~V~~~D~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~d 80 (383)
T d1gy8a_ 1 SHMRVLVCGGAGYIGSHFVRALLRDTNHSVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPKPPWADRYAALEVGDVRN 80 (383)
T ss_dssp CCCEEEEETTTSHHHHHHHHHHHHHCCCEEEEEECCTTTTTCCTTSCCHHHHHHHHHHSCSSCCTTTTCCCEEEESCTTC
T ss_pred CcCEEEEeCCCcHHHHHHHHHHHHhCCCEEEEEecCCcccccchhhhhhhhHHHHhhhhccccccccccceEEEECcccC
Confidence 368999999999999999999996 699999998522211 11111111111 112368999999999
Q ss_pred HHHHHHhhccC-CccEEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcCccccCCCCC------
Q 012176 182 APLLTKLFDVV-PFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQ------ 254 (469)
Q Consensus 182 ~~~l~~~~~~~-~~d~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS~~vyg~~~~------ 254 (469)
.+.++++++.. ++|+|||+|+.........++...++.|+.++.+++++|++.+++ +++++||..+|+....
T Consensus 81 ~~~l~~~~~~~~~~d~ViH~Aa~~~~~~~~~~~~~~~~~N~~~t~~~l~~~~~~~~~-~~~~~~s~~~~~~~~~~~~~~~ 159 (383)
T d1gy8a_ 81 EDFLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKYYDNNVVGILRLLQAMLLHKCD-KIIFSSSAAIFGNPTMGSVSTN 159 (383)
T ss_dssp HHHHHHHHHHSCCCCEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCC-EEEEEEEGGGTBSCCC-----C
T ss_pred HHHhhhhhhccceeehhhcccccccccccccccccccccccccccccchhhhccCCc-cccccccccccccccccccccc
Confidence 99999999875 459999999998887777888899999999999999999999987 9999999999875533
Q ss_pred -CCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHhCCcEEEEeecceecCCCCCCC---------hHHHHHHH-------
Q 012176 255 -VPFSESHRTDQPASLYAATKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPDM---------AYFFFTKD------- 317 (469)
Q Consensus 255 -~~~~E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~Gp~~~~~~---------~~~~~~~~------- 317 (469)
.++.|+++. .|.+.|+.+|..+|.++..+.+.+|++++++||++||||+...+. .++.++..
T Consensus 160 ~~~~~e~~~~-~p~~~Y~~sK~~~e~~~~~~~~~~gl~~~~lR~~~vyG~~~~~~~~~~~~~~~~~ip~ii~~~~~~~~~ 238 (383)
T d1gy8a_ 160 AEPIDINAKK-SPESPYGESKLIAERMIRDCAEAYGIKGICLRYFNACGAHEDGDIGEHYQGSTHLIPIILGRVMSDIAP 238 (383)
T ss_dssp CCCBCTTSCC-BCSSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECCCTTSSCSCCSTTCCSHHHHHHHHHHHHHSC
T ss_pred ccccccccCC-CCCCHHHhhHhHHHHHHHHHHHHhCCCEEEEecceeeccCccccccccccccchhHHHHHHHHHhhccc
Confidence 345666655 789999999999999999999999999999999999999876432 23333332
Q ss_pred ---------HHcCCceEEEee---CCCCcceEecccHHHHHHHHHHHhccCC---CCCCCCCceEEEeCCCCcccHHHHH
Q 012176 318 ---------ILQGKTIDVYKT---QDDREVARDFTYIDDVVKGCVGATGSGG---KKRGPAQLRVYNLGNTSPVPVGRLV 382 (469)
Q Consensus 318 ---------~~~g~~~~~~~~---~~~~~~~~~~v~v~Dva~~~~~~~~~~~---~~~~~~~~~iyni~~~~~vt~~el~ 382 (469)
...+.++.+++. .++|.+.+||+|++|+|++++.+++... .......+++|||++++++++.|++
T Consensus 239 ~~~~~~~~~~~~~~~~~i~g~~~~~~dg~~~Rdfi~v~D~~~a~~~~~~~~~~~~~~~~~~~~~i~Ni~s~~~~s~~el~ 318 (383)
T d1gy8a_ 239 DQRLTIHEDASTDKRMPIFGTDYPTPDGTCVRDYVHVCDLASAHILALDYVEKLGPNDKSKYFSVFNLGTSRGYSVREVI 318 (383)
T ss_dssp C-----------CCCEEEECSCSSSTTSSCEECEEEHHHHHHHHHHHHHHHHTCCTTTGGGSEEEEEESCSCCEEHHHHH
T ss_pred cccchhhhhhhcCCceEEeCCccccCCCCeEEeeEEHHHHHHHHHHHHhhhccccccccccCccEEEeCCCCceeHHHHH
Confidence 234556666531 1357889999999999999999876421 1112345689999999999999999
Q ss_pred HHHHHHhCCCccceeecCCCCCCCCcccCChHHHHHhcCCCccCcHHHHHHHH-HHHHHHHc
Q 012176 383 SILENLLNTKAKKHVIRMPRNGDVPYTHANVSLAYKDFGYKPTTDLAAGLRKF-VKWYVSYY 443 (469)
Q Consensus 383 ~~i~~~~g~~~~~~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~~l~~~l~~~-v~~~~~~~ 443 (469)
+.+.+.+|.+..+...+. +.++..+...|++|++++|||+|+++++|+|++. +.||+++.
T Consensus 319 ~~i~~~~~~~~~~~~~~~-~~~d~~~~~~d~~k~~k~LGw~P~~~l~e~i~~t~~~w~~~~~ 379 (383)
T d1gy8a_ 319 EVARKTTGHPIPVRECGR-REGDPAYLVAASDKAREVLGWKPKYDTLEAIMETSWKFQRTHP 379 (383)
T ss_dssp HHHHHHHCCCCCEEEECC-CTTCCSEECBCCHHHHHHTCCCCSCCSHHHHHHHHHHHHHTCT
T ss_pred HHHHHHhCCCCceEECCC-CCCCcCEeeeCHHHHHHHHCCccCCCHHHHHHHHHHHHHHhCc
Confidence 999999999887766554 5678888899999999999999999999999887 68887653
|
| >d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=5.6e-42 Score=335.88 Aligned_cols=296 Identities=20% Similarity=0.300 Sum_probs=247.0
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCccEE
Q 012176 118 GMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTHV 197 (469)
Q Consensus 118 ~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~d~V 197 (469)
+|+|||||||||||++|+++|+++|+.|+++++..+ .|+.|.+.+.++++..++|+|
T Consensus 2 kkkIlITG~tGfiG~~l~~~L~~~g~~vi~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~d~v 58 (315)
T d1e6ua_ 2 KQRVFIAGHRGMVGSAIRRQLEQRGDVELVLRTRDE-----------------------LNLLDSRAVHDFFASERIDQV 58 (315)
T ss_dssp CEEEEEETTTSHHHHHHHHHHTTCTTEEEECCCTTT-----------------------CCTTCHHHHHHHHHHHCCSEE
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHCcCEEEEecCchh-----------------------ccccCHHHHHHHHhhcCCCEE
Confidence 579999999999999999999999999988875321 589999999999998888999
Q ss_pred EEcccccCh-hhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcCccccCCCCCCCCCCCCCCC----CCCChHHH
Q 012176 198 LHLAAQAGV-RYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTD----QPASLYAA 272 (469)
Q Consensus 198 ih~Aa~~~~-~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~----~p~~~Y~~ 272 (469)
+|+|+..+. .....++..+++.|+.||.+++++|++.+++ +|||+||.+|||.....+++|+.+.. .+.+.|+.
T Consensus 59 ~~~a~~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~v~-~~i~~SS~~vyg~~~~~~~~E~~~~~~~~~~~~~~Y~~ 137 (315)
T d1e6ua_ 59 YLAAAKVGGIVANNTYPADFIYQNMMIESNIIHAAHQNDVN-KLLFLGSSCIYPKLAKQPMAESELLQGTLEPTNEPYAI 137 (315)
T ss_dssp EECCCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCC-EEEEECCGGGSCTTCCSSBCGGGTTSSCCCGGGHHHHH
T ss_pred EEcchhccccccchhhHHHHHHHHHHHHHHHHHHHHHcCCC-EEEEECCceEcCCCCCCCccCCccccCCCCCCCCHHHH
Confidence 999987543 2345667788999999999999999999987 99999999999988877888865432 33467999
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEeecceecCCCCCCC---------hHHHHHHHHHcCCceEEEeeCCCCcceEecccHH
Q 012176 273 TKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPDM---------AYFFFTKDILQGKTIDVYKTQDDREVARDFTYID 343 (469)
Q Consensus 273 sK~~~E~~~~~~~~~~gi~~~ilRp~~v~Gp~~~~~~---------~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~ 343 (469)
+|.++|+++..+++++|++++++||++||||++..+. ....+......+.++.+. +++.+.++|+|++
T Consensus 138 sK~~~E~~~~~~~~~~gl~~~ilR~~~vyGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---g~g~~~~~~~~v~ 214 (315)
T d1e6ua_ 138 AKIAGIKLCESYNRQYGRDYRSVMPTNLYGPHDNFHPSNSHVIPALLRRFHEATAQKAPDVVVW---GSGTPMREFLHVD 214 (315)
T ss_dssp HHHHHHHHHHHHHHHHCCEEEEEEECEEESTTCCCCTTCSSHHHHHHHHHHHHHHHTCSEEEEE---SCSCCEECEEEHH
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEeeccEECCCCCCCccccccceeeeccchhhhhccCCceEEc---CCCceEEEEEEee
Confidence 9999999999999999999999999999999775431 123345666778888888 7789999999999
Q ss_pred HHHHHHHHHhccCCCC---CCCCCceEEEeCCCCcccHHHHHHHHHHHhCCCccceeecCCCCCCCCcccCChHHHHHhc
Q 012176 344 DVVKGCVGATGSGGKK---RGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRNGDVPYTHANVSLAYKDF 420 (469)
Q Consensus 344 Dva~~~~~~~~~~~~~---~~~~~~~iyni~~~~~vt~~el~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~d~~ka~~~L 420 (469)
|++.++..++++.... ........+|++.+...++.++++.+.+.+|.+..+...+. +.++......|++|++ +|
T Consensus 215 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~i~~~~~-~~~~~~~~~~d~sk~k-~L 292 (315)
T d1e6ua_ 215 DMAAASIHVMELAHEVWLENTQPMLSHINVGTGVDCTIRELAQTIAKVVGYKGRVVFDAS-KPDGTPRKLLDVTRLH-QL 292 (315)
T ss_dssp HHHHHHHHHHHSCHHHHHHTSBTTBCCEEESCSCCEEHHHHHHHHHHHHTCCSEEEEETT-SCCCCSBCCBCCHHHH-HT
T ss_pred hhHHHHHHhhhhccccccccccccccccccCCCcchHHHHHHHHHHHHhCCCcceEECCC-CCCCCceeccCHHHHH-Hc
Confidence 9999999997654211 01233478999999999999999999999999987766554 4556666778999996 69
Q ss_pred CCCccCcHHHHHHHHHHHHHHH
Q 012176 421 GYKPTTDLAAGLRKFVKWYVSY 442 (469)
Q Consensus 421 G~~p~~~l~~~l~~~v~~~~~~ 442 (469)
||+|+++++|+|+++++||+++
T Consensus 293 g~~p~~~l~e~i~~ti~w~~~N 314 (315)
T d1e6ua_ 293 GWYHEISLEAGLASTYQWFLEN 314 (315)
T ss_dssp TCCCCCCHHHHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHHHHc
Confidence 9999999999999999999875
|
| >d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-tyvelose-2-epimerase species: Salmonella typhi [TaxId: 90370]
Probab=100.00 E-value=2.1e-41 Score=333.90 Aligned_cols=310 Identities=22% Similarity=0.332 Sum_probs=252.7
Q ss_pred EEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCccEEEE
Q 012176 120 TVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTHVLH 199 (469)
Q Consensus 120 ~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~d~Vih 199 (469)
|||||||+||||++|+++|+++|++|+++++...... ...........+++++.+|++|.+.+.++++++++|+|||
T Consensus 2 KILVTGatGfIGs~lv~~Ll~~g~~V~~id~~~~~~~---~~~~~~~~~~~~~~~i~~Di~~~~~l~~~~~~~~~d~Vih 78 (338)
T d1orra_ 2 KLLITGGCGFLGSNLASFALSQGIDLIVFDNLSRKGA---TDNLHWLSSLGNFEFVHGDIRNKNDVTRLITKYMPDSCFH 78 (338)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSTTH---HHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHCCSEEEE
T ss_pred EEEEECCCcHHHHHHHHHHHHCcCEEEEEECCCcccc---hhHHHHhhccCCcEEEEcccCCHHHHHHHHHhcCCceEEe
Confidence 6999999999999999999999999999986443221 1112222335689999999999999999999999999999
Q ss_pred cccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcCccccCCCCCCCC----------------CCCCCC
Q 012176 200 LAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPF----------------SESHRT 263 (469)
Q Consensus 200 ~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS~~vyg~~~~~~~----------------~E~~~~ 263 (469)
+|+.........++...+++|+.||.+|+++|.+.++...|++.|+..+|+.....+. .+..+.
T Consensus 79 ~aa~~~~~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~~~i~~sS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (338)
T d1orra_ 79 LAGQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQYNSNCNIIYSSTNKVYGDLEQYKYNETETRYTCVDKPNGYDESTQL 158 (338)
T ss_dssp CCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEEEGGGGTTCTTSCEEECSSCEEETTCTTCBCTTSCC
T ss_pred ecccccccccccChHHHHHHHHHHHHHHHHhhhcccccccccccccccccccccccccccccccccccccccCcccCCcc
Confidence 9999888777789999999999999999999999999845555555566654433221 122222
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHhCCcEEEEeecceecCCCCC---CChHHHHHHHHHc-----CCceEEEeeCCCCcc
Q 012176 264 DQPASLYAATKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRP---DMAYFFFTKDILQ-----GKTIDVYKTQDDREV 335 (469)
Q Consensus 264 ~~p~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~Gp~~~~---~~~~~~~~~~~~~-----g~~~~~~~~~~~~~~ 335 (469)
.|.+.|+.+|...|.++..+...+++...++|+..+||+.... ...+..++..+++ ++++.++ +++++
T Consensus 159 -~~~~~y~~~k~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---g~g~~ 234 (338)
T d1orra_ 159 -DFHSPYGCSKGAADQYMLDYARIFGLNTVVFRHSSMYGGRQFATYDQGWVGWFCQKAVEIKNGINKPFTIS---GNGKQ 234 (338)
T ss_dssp -CCCHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTCCCBTTBCHHHHHHHHHHHHHTTCCCCEEEE---SSSCC
T ss_pred -ccccccccccchhhhhhhhhhhccCcccccccccceeeccccccccccccchhhHHHHHHHhccCCceEEe---CCCce
Confidence 5778899999999999999999999999999999999875532 3345666665543 7788888 78999
Q ss_pred eEecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCC--CCcccHHHHHHHHHHHhCCCccceeecCCCCCCCCcccCCh
Q 012176 336 ARDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGN--TSPVPVGRLVSILENLLNTKAKKHVIRMPRNGDVPYTHANV 413 (469)
Q Consensus 336 ~~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~--~~~vt~~el~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~d~ 413 (469)
.++|+|++|++++++.++++.. ...+++||+.. +..+++.|+++.+.+..|.+.++...+. +.++...+..|+
T Consensus 235 ~r~~~~v~D~~~~~~~~l~~~~----~~~~~~~~i~~~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~d~ 309 (338)
T d1orra_ 235 VRDVLHAEDMISLYFTALANVS----KIRGNAFNIGGTIVNSLSLLELFKLLEDYCNIDMRFTNLPV-RESDQRVFVADI 309 (338)
T ss_dssp EEECEEHHHHHHHHHHHHHTHH----HHTTCEEEESSCGGGEEEHHHHHHHHHHHHTCCCCEEEECC-CSSCCSEECBCC
T ss_pred eEeeecccchhhHHHHHHhccc----cccCccccccccccccccHHHHHHHHHHHHCCCceeEeCCC-CCCCcCeeeECH
Confidence 9999999999999999987753 23458999854 5679999999999999999887777664 456777788899
Q ss_pred HHHHHhcCCCccCcHHHHHHHHHHHHHH
Q 012176 414 SLAYKDFGYKPTTDLAAGLRKFVKWYVS 441 (469)
Q Consensus 414 ~ka~~~LG~~p~~~l~~~l~~~v~~~~~ 441 (469)
+|++++|||+|+++++|+|+++++||++
T Consensus 310 ~k~~~~Lg~~p~~sl~e~i~~ti~W~k~ 337 (338)
T d1orra_ 310 KKITNAIDWSPKVSAKDGVQKMYDWTSS 337 (338)
T ss_dssp HHHHHHHCCCCCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCcCCCHHHHHHHHHHHHHc
Confidence 9999999999999999999999999975
|
| >d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-glucose-4,6-dehydratase species: Yersinia pseudotuberculosis [TaxId: 633]
Probab=100.00 E-value=1.7e-40 Score=330.45 Aligned_cols=321 Identities=20% Similarity=0.229 Sum_probs=255.8
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCccE
Q 012176 117 NGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTH 196 (469)
Q Consensus 117 ~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~d~ 196 (469)
++|+||||||+||||++|+++|+++|++|++++|.......... ......+++++.+|++|++.+.++++...+|+
T Consensus 7 ~~KkILVTG~tGfIGs~lv~~Ll~~g~~V~~~~r~~~~~~~~~~----~~~~~~~i~~~~~Dl~d~~~l~~~~~~~~~~~ 82 (356)
T d1rkxa_ 7 QGKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPTVPSLFE----TARVADGMQSEIGDIRDQNKLLESIREFQPEI 82 (356)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCSSSSCHHH----HTTTTTTSEEEECCTTCHHHHHHHHHHHCCSE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCccHHHHh----hhhcccCCeEEEeeccChHhhhhhhhhchhhh
Confidence 57999999999999999999999999999999997765443221 11123489999999999999999999999999
Q ss_pred EEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcCccccCCCCCC-CCCCCCCCCCCCChHHHHHH
Q 012176 197 VLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQV-PFSESHRTDQPASLYAATKK 275 (469)
Q Consensus 197 Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS~~vyg~~~~~-~~~E~~~~~~p~~~Y~~sK~ 275 (469)
|+|+|+......+..++...+++|+.|+.+++++|++.+....+++.|+..+|...... +..|+++ ..|.++|+.+|.
T Consensus 83 v~~~aa~~~~~~~~~~~~~~~~~Nv~g~~n~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~-~~p~~~y~~~k~ 161 (356)
T d1rkxa_ 83 VFHMAAQPLVRLSYSEPVETYSTNVMGTVYLLEAIRHVGGVKAVVNITSDKCYDNKEWIWGYRENEA-MGGYDPYSNSKG 161 (356)
T ss_dssp EEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHCCCCEEEEECCGGGBCCCCSSSCBCTTSC-BCCSSHHHHHHH
T ss_pred hhhhhccccccccccCCccccccccccchhhhhhhhccccccccccccccccccccccccccccccc-cCCCCccccccc
Confidence 99999998888788899999999999999999999998877577777776666544433 4444444 478999999999
Q ss_pred HHHHHHHHHHHH---------hCCcEEEEeecceecCCCCC-CChHHHHHHHHHcCCceEEEeeCCCCcceEecccHHHH
Q 012176 276 AGEEIAHTYNHI---------YGLALTGLRFFTVYGPWGRP-DMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDV 345 (469)
Q Consensus 276 ~~E~~~~~~~~~---------~gi~~~ilRp~~v~Gp~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dv 345 (469)
..|..+..++.+ +++.++++||+.+|||+... ..++..+++.+..+.++ +. +++++.++++|++|+
T Consensus 162 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~vyGp~~~~~~~~i~~~~~~~~~~~~~-~~---~~~~~~~~~~~v~D~ 237 (356)
T d1rkxa_ 162 CAELVTSSYRNSFFNPANYGQHGTAVATVRAGNVIGGGDWALDRIVPDILRAFEQSQPV-II---RNPHAIRPWQHVLEP 237 (356)
T ss_dssp HHHHHHHHHHHHHSCGGGHHHHCCEEEEEECCCEECTTCCCSSCHHHHHHHHHHTTCCE-EC---SCTTCEECCEETHHH
T ss_pred cchhhhhHHhhhcccchhccccCceEEeccCCCeeCCCcchhhHHHHHHHHHHhCCCce-EE---eeccccccccccccc
Confidence 999999887753 47889999999999998643 44666777777766655 44 568899999999999
Q ss_pred HHHHHHHhccCCCCCC-CCCceEEEeCCCCcccHHHHHHHHHHHhCCCccceeecCCCCCCCCcccCChHHHHHhcCCCc
Q 012176 346 VKGCVGATGSGGKKRG-PAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRNGDVPYTHANVSLAYKDFGYKP 424 (469)
Q Consensus 346 a~~~~~~~~~~~~~~~-~~~~~iyni~~~~~vt~~el~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~d~~ka~~~LG~~p 424 (469)
+.+++.++.++..... ...+..++......+++.++++.+.+.++...........++.+.....+|++|++++|||+|
T Consensus 238 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~skak~~LGw~P 317 (356)
T d1rkxa_ 238 LSGYLLLAQKLYTDGAEYAEGWNFGPNDADATPVKNIVEQMVKYWGEGASWQLDGNAHPHEAHYLKLDCSKAKMQLGWHP 317 (356)
T ss_dssp HHHHHHHHHHHHHTCGGGCSEEECCCCGGGCEEHHHHHHHHHHHHCTTCCEEC-------CCCCCCBCCHHHHHHHCCCC
T ss_pred cchhhhhhhhhcccccccccccccccccccccccchhhhhhHHHhCCCccEEEcCCCCCCCcCeeeEcHHHHHHHHCCCc
Confidence 9999998776421100 012233444556789999999999999999887776666667778888899999999999999
Q ss_pred cCcHHHHHHHHHHHHHHHcCCC
Q 012176 425 TTDLAAGLRKFVKWYVSYYGIQ 446 (469)
Q Consensus 425 ~~~l~~~l~~~v~~~~~~~~~~ 446 (469)
+++++++|+++++||++++..+
T Consensus 318 ~~~l~egi~~ti~wyk~~~~~~ 339 (356)
T d1rkxa_ 318 RWNLNTTLEYIVGWHKNWLSGT 339 (356)
T ss_dssp CCCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHHHHHHHcCC
Confidence 9999999999999999987753
|
| >d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: DTDP-4-dehydrorhamnose reductase RfbD species: Clostridium acetobutylicum [TaxId: 1488]
Probab=100.00 E-value=2.1e-38 Score=304.51 Aligned_cols=275 Identities=17% Similarity=0.145 Sum_probs=243.5
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCccEEE
Q 012176 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTHVL 198 (469)
Q Consensus 119 ~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~d~Vi 198 (469)
|+|||||||||||++|+++|.++||+|++++|.+ .|+.|.+.+++++++.++|+||
T Consensus 2 MKIlItGasGfiG~~l~~~L~~~g~~Vi~~~r~~------------------------~D~~d~~~~~~~l~~~~~d~vi 57 (281)
T d1vl0a_ 2 MKILITGANGQLGREIQKQLKGKNVEVIPTDVQD------------------------LDITNVLAVNKFFNEKKPNVVI 57 (281)
T ss_dssp EEEEEESTTSHHHHHHHHHHTTSSEEEEEECTTT------------------------CCTTCHHHHHHHHHHHCCSEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCEEEEeechh------------------------ccCCCHHHHHHHHHHcCCCEEE
Confidence 7899999999999999999999999999999832 4899999999999998999999
Q ss_pred EcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcCccccCCCCCCCCCCCCCCCCCCChHHHHHHHHH
Q 012176 199 HLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGE 278 (469)
Q Consensus 199 h~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y~~sK~~~E 278 (469)
|+|+..........+......|+..+..+.++++..+. .++++||..+|+.....+.+|.++. .+...|+.+|..+|
T Consensus 58 h~a~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~--~~~~~ss~~v~~~~~~~~~~e~~~~-~~~~~~~~~k~~~e 134 (281)
T d1vl0a_ 58 NCAAHTAVDKCEEQYDLAYKINAIGPKNLAAAAYSVGA--EIVQISTDYVFDGEAKEPITEFDEV-NPQSAYGKTKLEGE 134 (281)
T ss_dssp ECCCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHTC--EEEEEEEGGGSCSCCSSCBCTTSCC-CCCSHHHHHHHHHH
T ss_pred eeccccccccccccchhhcccccccccccccccccccc--cccccccceeeeccccccccccccc-cchhhhhhhhhHHH
Confidence 99999888888888899999999999999999988875 7999999999998888899999988 78899999999999
Q ss_pred HHHHHHHHHhCCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceEecccHHHHHHHHHHHhccCCC
Q 012176 279 EIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGATGSGGK 358 (469)
Q Consensus 279 ~~~~~~~~~~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~~~~~~~~~~~~ 358 (469)
.++++ ++.+++++||++||||+.+ +...++..+..+.++.+. +++.++++|++|+++++..++++...
T Consensus 135 ~~~~~----~~~~~~i~R~~~vyG~~~~---~~~~~~~~~~~~~~~~~~-----~~~~~~~i~v~D~~~~~~~~~~~~~~ 202 (281)
T d1vl0a_ 135 NFVKA----LNPKYYIVRTAWLYGDGNN---FVKTMINLGKTHDELKVV-----HDQVGTPTSTVDLARVVLKVIDEKNY 202 (281)
T ss_dssp HHHHH----HCSSEEEEEECSEESSSSC---HHHHHHHHHHHCSEEEEE-----SSCEECCEEHHHHHHHHHHHHHHTCC
T ss_pred HHHHH----hCCCccccceeEEeCCCcc---cccchhhhhccCCceeec-----CCceeccchhhhhhhhhhhhhhhccc
Confidence 88766 5889999999999999764 667788888889888887 57899999999999999999987632
Q ss_pred CCCCCCceEEEeCCCCcccHHHHHHHHHHHhCCCccceeecCCCCC----CCCcccCChHHHHHhcCCCccCcHHHHHHH
Q 012176 359 KRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRNG----DVPYTHANVSLAYKDFGYKPTTDLAAGLRK 434 (469)
Q Consensus 359 ~~~~~~~~iyni~~~~~vt~~el~~~i~~~~g~~~~~~~~~~~~~~----~~~~~~~d~~ka~~~LG~~p~~~l~~~l~~ 434 (469)
++||+++++.+|+.|+++.+.+.+|++.++..++..... ++.+..+|++|++++|||+|. +|+++|++
T Consensus 203 -------g~~~~~~~~~~s~~e~~~~i~~~~g~~~~i~~i~~~~~~~~a~rp~~~~ld~~k~~~~~g~~~~-~~~~~l~~ 274 (281)
T d1vl0a_ 203 -------GTFHCTCKGICSWYDFAVEIFRLTGIDVKVTPCTTEEFPRPAKRPKYSVLRNYMLELTTGDITR-EWKESLKE 274 (281)
T ss_dssp -------EEEECCCBSCEEHHHHHHHHHHHHCCCCEEEEECSTTSCCSSCCCSBCCBCCHHHHHTTCCCCC-BHHHHHHH
T ss_pred -------CceeEeCCCccchHHHHHHHHHHhCCCceEEeccHHHcCCcCCCccccccCHHHHHHHhCCCCC-CHHHHHHH
Confidence 799999999999999999999999999877766533221 123456899999999999998 89999999
Q ss_pred HHHHHH
Q 012176 435 FVKWYV 440 (469)
Q Consensus 435 ~v~~~~ 440 (469)
+++|++
T Consensus 275 ~l~~l~ 280 (281)
T d1vl0a_ 275 YIDLLQ 280 (281)
T ss_dssp HHHHHT
T ss_pred HHHHhc
Confidence 999984
|
| >d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Aldehyde reductase II species: Sporobolomyces salmonicolor [TaxId: 5005]
Probab=100.00 E-value=1.4e-36 Score=301.19 Aligned_cols=305 Identities=18% Similarity=0.159 Sum_probs=222.0
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCc
Q 012176 115 RPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPF 194 (469)
Q Consensus 115 ~~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~ 194 (469)
...||+||||||+||||++|+++|+++|++|++++|+..... .+...............+.+|+.|.+.+.+++.++
T Consensus 8 ~~~gk~VlVTG~sGfIGs~l~~~Ll~~G~~V~~~vR~~~~~~-~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~-- 84 (342)
T d1y1pa1 8 LPEGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLA-NLQKRWDAKYPGRFETAVVEDMLKQGAYDEVIKGA-- 84 (342)
T ss_dssp SCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHH-HHHHHHHHHSTTTEEEEECSCTTSTTTTTTTTTTC--
T ss_pred CCCcCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCchhHH-HHHHhhhccccccccEEEeccccchhhhhhhcccc--
Confidence 356899999999999999999999999999999998543111 11111111122334566889999999999999988
Q ss_pred cEEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcCccccCCCC----CCCCC------------
Q 012176 195 THVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNT----QVPFS------------ 258 (469)
Q Consensus 195 d~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS~~vyg~~~----~~~~~------------ 258 (469)
|+|+|+|+.... ..++...++.|+.||.+++++|.+.+..++|||+||.++++... ....+
T Consensus 85 ~~v~~~a~~~~~---~~~~~~~~~~nv~gt~~ll~~~~~~~~v~~~i~~SS~~~~~~~~~~~~~~~~~e~~~~~~~~~~~ 161 (342)
T d1y1pa1 85 AGVAHIASVVSF---SNKYDEVVTPAIGGTLNALRAAAATPSVKRFVLTSSTVSALIPKPNVEGIYLDEKSWNLESIDKA 161 (342)
T ss_dssp SEEEECCCCCSC---CSCHHHHHHHHHHHHHHHHHHHHTCTTCCEEEEECCGGGTCCCCTTCCCCEECTTCCCHHHHHHH
T ss_pred hhhhhhcccccc---cccccccccchhhhHHHHHHhhhcccccccccccccceeeccCCCCCCCcccccccccccccccc
Confidence 999999997543 25667788999999999999998874334999999976543221 11112
Q ss_pred ----CCCCCCCCCChHHHHHHHHHHHHHHHHHHhC--CcEEEEeecceecCCCCC---CChHHHHHHHHHcCCceEEEee
Q 012176 259 ----ESHRTDQPASLYAATKKAGEEIAHTYNHIYG--LALTGLRFFTVYGPWGRP---DMAYFFFTKDILQGKTIDVYKT 329 (469)
Q Consensus 259 ----E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~g--i~~~ilRp~~v~Gp~~~~---~~~~~~~~~~~~~g~~~~~~~~ 329 (469)
|+++. .|.+.|+.+|..+|.+++.+.+.++ ++++++||+.||||...+ ......++..+..|+......
T Consensus 162 ~~~~e~~~~-~p~~~Y~~sK~~~E~~~~~~~~~~~~~~~~~~i~p~~v~Gp~~~~~~~~~~~~~~~~~l~~g~~~~~~~- 239 (342)
T d1y1pa1 162 KTLPESDPQ-KSLWVYAASKTEAELAAWKFMDENKPHFTLNAVLPNYTIGTIFDPETQSGSTSGWMMSLFNGEVSPALA- 239 (342)
T ss_dssp HHSCTTSTT-HHHHHHHHHHHHHHHHHHHHHHHHCCSSEEEEEEESEEECCCSCTTTCCCHHHHHHHHHHTTCCCHHHH-
T ss_pred ccccccCCC-CCcCcccchhHhHHHHHHHhhhhcccccccceecccceeCCCCCccccccchHHHHHHHHcCCcCcccC-
Confidence 22222 4567899999999999999988764 778999999999986433 235677888888888665442
Q ss_pred CCCCcceEecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCCcccHHHHHHHHHHHhCCCccceeecCCCCCCCCc-
Q 012176 330 QDDREVARDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRNGDVPY- 408 (469)
Q Consensus 330 ~~~~~~~~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~~vt~~el~~~i~~~~g~~~~~~~~~~~~~~~~~~- 408 (469)
+.+.++|+||+|+|++++.+++++. +. +.|++++++.+|+.|+++++.+.++........+.. ..+...
T Consensus 240 ---~~~~~~~v~v~Dva~~~i~~l~~~~-----~~-g~~~~~~~~~~t~~eia~~i~k~~p~~~~~~~~~~~-~~~~~~~ 309 (342)
T d1y1pa1 240 ---LMPPQYYVSAVDIGLLHLGCLVLPQ-----IE-RRRVYGTAGTFDWNTVLATFRKLYPSKTFPADFPDQ-GQDLSKF 309 (342)
T ss_dssp ---TCCSEEEEEHHHHHHHHHHHHHCTT-----CC-SCEEEECCEEECHHHHHHHHHHHCTTSCCCCCCCCC-CCCCCEE
T ss_pred ---CccceeeeeHHHHHHHHHHhhcCcc-----cc-ceEEEEcCCceEHHHHHHHHHHHcCCCcCCccCCcc-Ccccccc
Confidence 5566899999999999999998863 22 445678888999999999999998543221111111 111111
Q ss_pred ccCChHHHHHhcCCCccCcHHHHHHHHHH
Q 012176 409 THANVSLAYKDFGYKPTTDLAAGLRKFVK 437 (469)
Q Consensus 409 ~~~d~~ka~~~LG~~p~~~l~~~l~~~v~ 437 (469)
......+..+.|||.|.++|+++|+++++
T Consensus 310 ~~~~s~~~~k~lg~~~~~~lee~i~d~I~ 338 (342)
T d1y1pa1 310 DTAPSLEILKSLGRPGWRSIEESIKDLVG 338 (342)
T ss_dssp CCHHHHHHHHHTTCCSCCCHHHHHHHHHC
T ss_pred cchHHHHHHHHcCCCCCcCHHHHHHHHHH
Confidence 11223455567999999999999999976
|
| >d1eq2a_ c.2.1.2 (A:) ADP-L-glycero-D-mannoheptose 6-epimerase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: ADP-L-glycero-D-mannoheptose 6-epimerase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=7.7e-35 Score=282.20 Aligned_cols=293 Identities=22% Similarity=0.326 Sum_probs=205.7
Q ss_pred EEEEcCCChhHHHHHHHHHHCCC-cEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHH-HHHhhcc---CCcc
Q 012176 121 VLVTGAAGFVGSHCSLALKKRGD-GVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPL-LTKLFDV---VPFT 195 (469)
Q Consensus 121 VlVtGatG~IG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~-l~~~~~~---~~~d 195 (469)
||||||+||||++|+++|+++|+ +|+++++..... +.. ...+... .|..+.+. ....+.. ..++
T Consensus 2 ILITGgsGfIGs~lv~~L~~~g~~~V~~~d~~~~~~----~~~--~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~ 70 (307)
T d1eq2a_ 2 IIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGT----KFV--NLVDLNI-----ADYMDKEDFLIQIMAGEEFGDVE 70 (307)
T ss_dssp EEEETTTSHHHHHHHHHHHTTTCCCEEEEECCSSGG----GGH--HHHTSCC-----SEEEEHHHHHHHHHTTCCCSSCC
T ss_pred EEEecCccHHHHHHHHHHHhCCCCeEEEEECCCCcc----hhh--cccccch-----hhhccchHHHHHHhhhhcccchh
Confidence 89999999999999999999995 799987543311 111 1111111 12222222 2222221 2458
Q ss_pred EEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcCccccCCCCCCCCCCCCCCCCCCChHHHHHH
Q 012176 196 HVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKK 275 (469)
Q Consensus 196 ~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y~~sK~ 275 (469)
+|+|+|+.... ...+.+...+.|+.++.+++++++..++ ++|+.||..+|+........++.+. .|.+.|+.+|.
T Consensus 71 ~i~~~aa~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~i--~~v~~ss~~~~~~~~~~~~~~~~~~-~~~~~Y~~~K~ 145 (307)
T d1eq2a_ 71 AIFHEGACSST--TEWDGKYMMDNNYQYSKELLHYCLEREI--PFLYASSAATYGGRTSDFIESREYE-KPLNVYGYSKF 145 (307)
T ss_dssp EEEECCSCCCT--TCCCHHHHHHHTHHHHHHHHHHHHHHTC--CEEEEEEGGGGTTCCSCBCSSGGGC-CCSSHHHHHHH
T ss_pred hhhhhcccccc--cccccccccccccccccccccccccccc--ccccccccccccccccccccccccc-ccccccccccc
Confidence 99999986443 3456677888999999999999999987 5888888888876665455554444 78899999999
Q ss_pred HHHHHHHHHHHHhCCcEEEEeecceecCCCCCC----ChHHHHHHHHHcCCceEEEeeCCCCcceEecccHHHHHHHHHH
Q 012176 276 AGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPD----MAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVG 351 (469)
Q Consensus 276 ~~E~~~~~~~~~~gi~~~ilRp~~v~Gp~~~~~----~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~~~~~ 351 (469)
.+|.+++.++..++++++++||++||||+...+ ..+..+.+.+..++...+.. +++.+.++|+|++|+++++..
T Consensus 146 ~~e~~~~~~~~~~~~~~~~~r~~~vyGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~~~~~r~~~~v~d~~~~~~~ 223 (307)
T d1eq2a_ 146 LFDEYVRQILPEANSQIVGFRYFNVYGPREGHKGSMASVAFHLNTQLNNGESPKLFE--GSENFKRDFVYVGDVADVNLW 223 (307)
T ss_dssp HHHHHHHHHGGGCSSCEEEEEECEEESSSCGGGGGGSCHHHHHHHHHHC---------------CBCEEEHHHHHHHHHH
T ss_pred hhhhhccccccccccccccccceeEeeccccccccccccccccccccccccceeeec--CccceeeeeeecccHHHHHHH
Confidence 999999999999999999999999999976543 34567778888887766543 568889999999999999999
Q ss_pred HhccCCCCCCCCCceEEEeCCCCcccHHHHHHHHHHHhCCCccceeecCCC---CCCCCcccCChHHHHHhcCCCccCcH
Q 012176 352 ATGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPR---NGDVPYTHANVSLAYKDFGYKPTTDL 428 (469)
Q Consensus 352 ~~~~~~~~~~~~~~~iyni~~~~~vt~~el~~~i~~~~g~~~~~~~~~~~~---~~~~~~~~~d~~ka~~~LG~~p~~~l 428 (469)
++.+.. .++||+++++.+++.|+++++.+..+. ..+...|.+. ..+..+...|++|+++.+||+|.+++
T Consensus 224 ~~~~~~-------~~~~~~~~~~~~si~~i~~~i~~~~~~-~~i~~~~~~~~~~~~~~~~~~~d~~k~~~~~~~~p~~sl 295 (307)
T d1eq2a_ 224 FLENGV-------SGIFNLGTGRAESFQAVADATLAYHKK-GQIEYIPFPDKLKGRYQAFTQADLTNLRAAGYDKPFKTV 295 (307)
T ss_dssp HHHHCC-------CEEEEESCSCCBCHHHHHHHC----------------------CCCSCCBCCHHHHHTTCCCCCCCH
T ss_pred Hhhhcc-------ccccccccccchhHHHHHHHHHHhcCC-CCeeEeeCCccCCCCCceeeecCHHHHHHHHCCCCCCCH
Confidence 988753 289999999999999999999887653 3343334332 23345566799999999999999999
Q ss_pred HHHHHHHHHHH
Q 012176 429 AAGLRKFVKWY 439 (469)
Q Consensus 429 ~~~l~~~v~~~ 439 (469)
+|+|+++++||
T Consensus 296 ~egi~~~i~w~ 306 (307)
T d1eq2a_ 296 AEGVTEYMAWL 306 (307)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhC
Confidence 99999999996
|
| >d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica serovar typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) species: Salmonella enterica serovar typhimurium [TaxId: 90371]
Probab=100.00 E-value=1.5e-34 Score=279.14 Aligned_cols=285 Identities=16% Similarity=0.157 Sum_probs=226.0
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCccEEE
Q 012176 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTHVL 198 (469)
Q Consensus 119 ~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~d~Vi 198 (469)
|+||||||+||||++|++.|.++|+.|. +++... .+.+|++|.+.+++++++.+||+||
T Consensus 1 MKILItG~tGfiG~~l~~~L~~~g~~v~-~~~~~~--------------------~~~~Dl~~~~~~~~~i~~~~~D~Vi 59 (298)
T d1n2sa_ 1 MNILLFGKTGQVGWELQRSLAPVGNLIA-LDVHSK--------------------EFCGDFSNPKGVAETVRKLRPDVIV 59 (298)
T ss_dssp CEEEEECTTSHHHHHHHHHTTTTSEEEE-ECTTCS--------------------SSCCCTTCHHHHHHHHHHHCCSEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCEEE-EECCCc--------------------cccCcCCCHHHHHHHHHHcCCCEEE
Confidence 7899999999999999999999987554 444322 1347999999999999999999999
Q ss_pred EcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcCccccCCCCCCCCCCCCCCCCCCChHHHHHHHHH
Q 012176 199 HLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGE 278 (469)
Q Consensus 199 h~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y~~sK~~~E 278 (469)
|+||......+..++...++.|+.++.+++++|++.+. +++++||+.+|+.....|++|+++. .|.+.|+.+|..+|
T Consensus 60 h~Aa~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~~~~ss~~~~~~~~~~~~~E~~~~-~p~~~y~~~k~~~e 136 (298)
T d1n2sa_ 60 NAAAHTAVDKAESEPELAQLLNATSVEAIAKAANETGA--WVVHYSTDYVFPGTGDIPWQETDAT-SPLNVYGKTKLAGE 136 (298)
T ss_dssp ECCCCCCHHHHTTCHHHHHHHHTHHHHHHHHHHTTTTC--EEEEEEEGGGSCCCTTCCBCTTSCC-CCSSHHHHHHHHHH
T ss_pred EecccccccccccCccccccccccccccchhhhhcccc--ccccccccccccCCCCCCCcccccc-CCCchHhhhhhhhh
Confidence 99999888888899999999999999999999998885 7999999999998888899999987 78999999999999
Q ss_pred HHHHHHHHHhCCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceEecccHHHHHHHHHHHhccCCC
Q 012176 279 EIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGATGSGGK 358 (469)
Q Consensus 279 ~~~~~~~~~~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~~~~~~~~~~~~ 358 (469)
.+++.. .....++|++..|+..+.. ....+...+..+.++.+. +.+..+++|++|+++++..++.....
T Consensus 137 ~~~~~~----~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~d~~~~~~~~i~~~~~ 205 (298)
T d1n2sa_ 137 KALQDN----CPKHLIFRTSWVYAGKGNN--FAKTMLRLAKERQTLSVI-----NDQYGAPTGAELLADCTAHAIRVALN 205 (298)
T ss_dssp HHHHHH----CSSEEEEEECSEECSSSCC--HHHHHHHHHHHCSEEEEE-----CSCEECCEEHHHHHHHHHHHHHHHHH
T ss_pred hhHHhh----hcccccccccceeeccCCc--cchhhhhhhcccceeecc-----cceeecccccchHHHHHHHHHhhhhc
Confidence 988774 3456777777776543332 344566667777777776 57789999999999999888653110
Q ss_pred CCCCCCceEEEeCCCCcccHHHHHHHHHHHhCCCc---ccee-ecCCCC------CCCCcccCChHHHHHhcCCCccCcH
Q 012176 359 KRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKA---KKHV-IRMPRN------GDVPYTHANVSLAYKDFGYKPTTDL 428 (469)
Q Consensus 359 ~~~~~~~~iyni~~~~~vt~~el~~~i~~~~g~~~---~~~~-~~~~~~------~~~~~~~~d~~ka~~~LG~~p~~~l 428 (469)
....+++||+++++.+++.|+++.+.+..+... .... .+.+.. ..+.+..+|++|+++.|||+|+ +|
T Consensus 206 --~~~~~~~~n~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~a~RP~~~~ld~~K~~~~~~~~~~-~~ 282 (298)
T d1n2sa_ 206 --KPEVAGLYHLVAGGTTTWHDYAALVFDEARKAGITLALTELNAVPTSAYPTPASRPGNSRLNTEKFQRNFDLILP-QW 282 (298)
T ss_dssp --CGGGCEEEECCCBSCEEHHHHHHHHHHHHHHHTCCCCCCEEEEECSTTSCCSSCCCSBCCBCCHHHHHHHTCCCC-BH
T ss_pred --cccccccccccCCCceecHHHHHHHHhhhhccCccccccceeeeehhhcCccCCCccccccCHHHHHHHHCCCCC-cH
Confidence 023459999999999999999999988764322 1111 111111 1123457899999999999998 99
Q ss_pred HHHHHHHHHHHHH
Q 012176 429 AAGLRKFVKWYVS 441 (469)
Q Consensus 429 ~~~l~~~v~~~~~ 441 (469)
+++|+++++++..
T Consensus 283 ~~gl~~~i~~~~~ 295 (298)
T d1n2sa_ 283 ELGVKRMLTEMFT 295 (298)
T ss_dssp HHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998854
|
| >d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Phenylcoumaran benzylic ether reductase species: Loblolly pine (Pinus taeda) [TaxId: 3352]
Probab=99.96 E-value=2.4e-29 Score=242.21 Aligned_cols=243 Identities=17% Similarity=0.146 Sum_probs=184.2
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCccE
Q 012176 117 NGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTH 196 (469)
Q Consensus 117 ~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~d~ 196 (469)
++|||||||||||||++++++|+++||+|++++|................+...+++++.+|+.+.+.+.+.+++. +.
T Consensus 2 ~kkKILVtGatG~iG~~l~~~L~~~G~~V~~l~R~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~--~~ 79 (307)
T d1qyca_ 2 SRSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFKASGANIVHGSIDDHASLVEAVKNV--DV 79 (307)
T ss_dssp CCCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCTTTTHHHHHHHHHHHTTTCEEECCCTTCHHHHHHHHHTC--SE
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEECCCccccchhHHHHHHhhccCCcEEEEeecccchhhhhhhhhc--ee
Confidence 4688999999999999999999999999999999877655444444444555668999999999999999999988 99
Q ss_pred EEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcCccccCCCCCCCCCCCCCCCCCCChHHHHHHH
Q 012176 197 VLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKA 276 (469)
Q Consensus 197 Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y~~sK~~ 276 (469)
|+|+++.. +..++.+++++++..+.. ++++.|+...+... .... .+...+...+..
T Consensus 80 vi~~~~~~---------------~~~~~~~~~~a~~~~~~~-~~~~~s~~~~~~~~-------~~~~-~~~~~~~~~~~~ 135 (307)
T d1qyca_ 80 VISTVGSL---------------QIESQVNIIKAIKEVGTV-KRFFPSEFGNDVDN-------VHAV-EPAKSVFEVKAK 135 (307)
T ss_dssp EEECCCGG---------------GSGGGHHHHHHHHHHCCC-SEEECSCCSSCTTS-------CCCC-TTHHHHHHHHHH
T ss_pred eeeccccc---------------ccchhhHHHHHHHHhccc-cceeeecccccccc-------cccc-cccccccccccc
Confidence 99999763 344567888999998887 88888875443211 1111 222334444444
Q ss_pred HHHHHHHHHHHhCCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceEecccHHHHHHHHHHHhccC
Q 012176 277 GEEIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGATGSG 356 (469)
Q Consensus 277 ~E~~~~~~~~~~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~~~~~~~~~~ 356 (469)
.+. +..+.+++++++||+.+||++...- ..+.....++..+.++ +.+++.++|+|++|+|++++.+++++
T Consensus 136 ~~~----~~~~~~~~~~i~r~~~v~g~~~~~~---~~~~~~~~~~~~~~~~---~~~~~~~~~i~v~Dva~~~~~~l~~~ 205 (307)
T d1qyca_ 136 VRR----AIEAEGIPYTYVSSNCFAGYFLRSL---AQAGLTAPPRDKVVIL---GDGNARVVFVKEEDIGTFTIKAVDDP 205 (307)
T ss_dssp HHH----HHHHHTCCBEEEECCEEHHHHTTTT---TCTTCSSCCSSEEEEE---TTSCCEEEEECHHHHHHHHHTTSSCG
T ss_pred ccc----hhhccCCCceecccceecCCCccch---hhhhhhhhhcccceee---ecccccccCCcHHHHHHHHHHHhcCh
Confidence 444 4444699999999999999865421 1223344566667776 77999999999999999999999876
Q ss_pred CCCCCCCCceEEEeCCCCcccHHHHHHHHHHHhCCCccceeec
Q 012176 357 GKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIR 399 (469)
Q Consensus 357 ~~~~~~~~~~iyni~~~~~vt~~el~~~i~~~~g~~~~~~~~~ 399 (469)
.. ..+.+||+++++.+|+.|+++.+.+++|.+.+...+|
T Consensus 206 ~~----~~~~~~~~~~~~~~s~~ei~~~~~~~~G~~~~~~~~~ 244 (307)
T d1qyca_ 206 RT----LNKTLYLRLPANTLSLNELVALWEKKIDKTLEKAYVP 244 (307)
T ss_dssp GG----TTEEEECCCGGGEEEHHHHHHHHHHHTTSCCEEEEEC
T ss_pred hh----cCceeEEeCCCCccCHHHHHHHHHHHHCCCCcEEECC
Confidence 31 2224577788899999999999999999998777665
|
| >d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Pinoresinol-lariciresinol reductase species: Giant arborvitae (Thuja plicata) [TaxId: 3316]
Probab=99.96 E-value=4.2e-29 Score=241.96 Aligned_cols=248 Identities=16% Similarity=0.104 Sum_probs=185.2
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCccE
Q 012176 117 NGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTH 196 (469)
Q Consensus 117 ~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~d~ 196 (469)
+++||||||||||||++|+++|+++||+|++++|......... ......+...+++++.+|+.|.+.+.+++.+. ++
T Consensus 2 ~k~KILVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~-~~~~~~~~~~~v~~v~~d~~d~~~~~~~~~~~--~~ 78 (312)
T d1qyda_ 2 KKSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDK-VQMLLYFKQLGAKLIEASLDDHQRLVDALKQV--DV 78 (312)
T ss_dssp CCCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCCSSCHHH-HHHHHHHHTTTCEEECCCSSCHHHHHHHHTTC--SE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCcccchhH-HHHHhhhccCCcEEEEeecccchhhhhhccCc--ch
Confidence 4567999999999999999999999999999999776554332 22333445568999999999999999999988 99
Q ss_pred EEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcCccccCCCCCCCCCCCCCCCCCCChHHHHHHH
Q 012176 197 VLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKA 276 (469)
Q Consensus 197 Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y~~sK~~ 276 (469)
++++++..... .|..++.+++++|++.+.. ++|+.||.+++.... ..+. .+...|...|..
T Consensus 79 ~~~~~~~~~~~-----------~~~~~~~~~l~~a~~~~~~-~~v~~Ss~g~~~~~~------~~~~-~~~~~~~~~~~~ 139 (312)
T d1qyda_ 79 VISALAGGVLS-----------HHILEQLKLVEAIKEAGNI-KRFLPSEFGMDPDIM------EHAL-QPGSITFIDKRK 139 (312)
T ss_dssp EEECCCCSSSS-----------TTTTTHHHHHHHHHHSCCC-SEEECSCCSSCTTSC------CCCC-SSTTHHHHHHHH
T ss_pred hhhhhhhcccc-----------cchhhhhHHHHHHHHhcCC-cEEEEeeccccCCCc------cccc-chhhhhhHHHHH
Confidence 99999763321 3566778899999988876 788888876654321 1222 455667766666
Q ss_pred HHHHHHHHHHHhCCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceEecccHHHHHHHHHHHhccC
Q 012176 277 GEEIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGATGSG 356 (469)
Q Consensus 277 ~E~~~~~~~~~~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~~~~~~~~~~ 356 (469)
++.+ ....+++++++||+.+||+....... .+......+..+.++ +++++.++|+|++|+|++++.++.++
T Consensus 140 ~~~~----~~~~~~~~~i~r~~~~~g~~~~~~~~--~~~~~~~~~~~~~~~---~~g~~~~~~i~v~Dva~a~~~~l~~~ 210 (312)
T d1qyda_ 140 VRRA----IEAASIPYTYVSSNMFAGYFAGSLAQ--LDGHMMPPRDKVLIY---GDGNVKGIWVDEDDVGTYTIKSIDDP 210 (312)
T ss_dssp HHHH----HHHTTCCBCEEECCEEHHHHTTTSSC--TTCCSSCCSSEECCB---TTSCSEEEEECHHHHHHHHHHHTTCG
T ss_pred HHHh----hcccccceEEeccceeecCCccchhh--HHHHhhhcccccccc---cccccccceeeHHHHHHHHHHHhcCc
Confidence 6654 44469999999999999975432111 111122345555555 77899999999999999999999876
Q ss_pred CCCCCCCCceEEEeCCCCcccHHHHHHHHHHHhCCCccceeec
Q 012176 357 GKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIR 399 (469)
Q Consensus 357 ~~~~~~~~~~iyni~~~~~vt~~el~~~i~~~~g~~~~~~~~~ 399 (469)
.. ..+.+|++++++.+|+.|+++.+++++|.+.+...++
T Consensus 211 ~~----~~~~~~~~~~~~~~s~~e~~~~~~~~~g~~~~~~~i~ 249 (312)
T d1qyda_ 211 QT----LNKTMYIRPPMNILSQKEVIQIWERLSEQNLDKIYIS 249 (312)
T ss_dssp GG----SSSEEECCCGGGEEEHHHHHHHHHHHHTCCCEECCBC
T ss_pred cc----cCceEEEeCCCcCCCHHHHHHHHHHHHCCCCeEEECC
Confidence 31 1224567777888999999999999999988776665
|
| >d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Biliverdin IX beta reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.94 E-value=2.7e-26 Score=210.16 Aligned_cols=203 Identities=15% Similarity=0.014 Sum_probs=157.5
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCcc
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFT 195 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~d 195 (469)
+.+|||+||||||+||++++++|+++||+|++++|+..... .....+++++.+|++|.+++.++++++ |
T Consensus 1 m~~kkIlV~GatG~iG~~v~~~Ll~~g~~V~~~~R~~~~~~---------~~~~~~~~~~~gD~~d~~~l~~al~~~--d 69 (205)
T d1hdoa_ 1 MAVKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLP---------SEGPRPAHVVVGDVLQAADVDKTVAGQ--D 69 (205)
T ss_dssp CCCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGSC---------SSSCCCSEEEESCTTSHHHHHHHHTTC--S
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEEcChhhcc---------cccccccccccccccchhhHHHHhcCC--C
Confidence 35789999999999999999999999999999999654221 123458999999999999999999998 9
Q ss_pred EEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcCccccCCCCCCCCCCCCCCCCCCChHHHHHH
Q 012176 196 HVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKK 275 (469)
Q Consensus 196 ~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y~~sK~ 275 (469)
+|||++|..... ...+.+..++.++++++++++++ +||++||.++++.....+ .....|...|.
T Consensus 70 ~vi~~~g~~~~~-------~~~~~~~~~~~~l~~aa~~~~v~-r~i~~ss~~~~~~~~~~~--------~~~~~~~~~~~ 133 (205)
T d1hdoa_ 70 AVIVLLGTRNDL-------SPTTVMSEGARNIVAAMKAHGVD-KVVACTSAFLLWDPTKVP--------PRLQAVTDDHI 133 (205)
T ss_dssp EEEECCCCTTCC-------SCCCHHHHHHHHHHHHHHHHTCC-EEEEECCGGGTSCTTCSC--------GGGHHHHHHHH
T ss_pred EEEEEeccCCch-------hhhhhhHHHHHHHHHHHHhcCCC-eEEEEeeeeccCCCcccc--------ccccccchHHH
Confidence 999999863321 11245788999999999999997 999999998886443211 22346888999
Q ss_pred HHHHHHHHHHHHhCCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceEecccHHHHHHHHHHHhcc
Q 012176 276 AGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGATGS 355 (469)
Q Consensus 276 ~~E~~~~~~~~~~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~~~~~~~~~ 355 (469)
.+|+++++ .|+++++|||+.+++.... + ...+. .+++....+++++|+|++++.++++
T Consensus 134 ~~e~~l~~----~~~~~tiirp~~~~~~~~~--------------~-~~~~~---~~~~~~~~~i~~~DvA~~~~~~l~~ 191 (205)
T d1hdoa_ 134 RMHKVLRE----SGLKYVAVMPPHIGDQPLT--------------G-AYTVT---LDGRGPSRVISKHDLGHFMLRCLTT 191 (205)
T ss_dssp HHHHHHHH----TCSEEEEECCSEEECCCCC--------------S-CCEEE---SSSCSSCSEEEHHHHHHHHHHTTSC
T ss_pred HHHHHHHh----cCCceEEEecceecCCCCc--------------c-cEEEe---eCCCCCCCcCCHHHHHHHHHHHhCC
Confidence 99987764 6999999999999874222 1 12333 3466777899999999999999988
Q ss_pred CCCCCCCCCceEEEeCC
Q 012176 356 GGKKRGPAQLRVYNLGN 372 (469)
Q Consensus 356 ~~~~~~~~~~~iyni~~ 372 (469)
+. ..|+.+.++.
T Consensus 192 ~~-----~~g~~~~~s~ 203 (205)
T d1hdoa_ 192 DE-----YDGHSTYPSH 203 (205)
T ss_dssp ST-----TTTCEEEEEC
T ss_pred CC-----CCCEEEecCC
Confidence 73 3456666653
|
| >d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: TAT-interacting protein TIP30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.94 E-value=3.9e-26 Score=213.13 Aligned_cols=209 Identities=12% Similarity=0.039 Sum_probs=162.0
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCC--cEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCC
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGD--GVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVP 193 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~ 193 (469)
+++|+|||||||||||++|+++|+++|. +|++++|.+...... ....+....+|+.+.+.+.++++++
T Consensus 12 m~~k~IlItGaTG~iG~~l~~~Ll~~g~~~~v~~~~R~~~~~~~~---------~~~~i~~~~~D~~~~~~~~~~~~~~- 81 (232)
T d2bkaa1 12 MQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEE---------AYKNVNQEVVDFEKLDDYASAFQGH- 81 (232)
T ss_dssp HTCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSG---------GGGGCEEEECCGGGGGGGGGGGSSC-
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHhCCCCCEEEEEecChhhhccc---------ccceeeeeeeccccccccccccccc-
Confidence 5678999999999999999999999994 899999976543321 1237888889999999999999988
Q ss_pred ccEEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcCccccCCCCCCCCCCCCCCCCCCChHHHH
Q 012176 194 FTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAAT 273 (469)
Q Consensus 194 ~d~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y~~s 273 (469)
|+|||++|.... ..+...+.++|+.++.+++++|++.+++ +|||+||..++. .+.+.|+.+
T Consensus 82 -d~vi~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~a~~~~v~-~fi~~Ss~~~~~--------------~~~~~Y~~~ 142 (232)
T d2bkaa1 82 -DVGFCCLGTTRG---KAGAEGFVRVDRDYVLKSAELAKAGGCK-HFNLLSSKGADK--------------SSNFLYLQV 142 (232)
T ss_dssp -SEEEECCCCCHH---HHHHHHHHHHHTHHHHHHHHHHHHTTCC-EEEEECCTTCCT--------------TCSSHHHHH
T ss_pred -cccccccccccc---ccchhhhhhhcccccceeeecccccCcc-ccccCCcccccc--------------CccchhHHH
Confidence 999999986422 2345677899999999999999999987 999999988764 345789999
Q ss_pred HHHHHHHHHHHHHHhCC-cEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceEecccHHHHHHHHHHH
Q 012176 274 KKAGEEIAHTYNHIYGL-ALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGA 352 (469)
Q Consensus 274 K~~~E~~~~~~~~~~gi-~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~~~~~~ 352 (469)
|..+|..+.+ .++ +++||||+.|||++.... ....++..+....+ ........+|++|+|++++.+
T Consensus 143 K~~~E~~l~~----~~~~~~~IlRP~~i~G~~~~~~-~~~~~~~~~~~~~~--------~~~~~~~~I~~~dvA~a~i~~ 209 (232)
T d2bkaa1 143 KGEVEAKVEE----LKFDRYSVFRPGVLLCDRQESR-PGEWLVRKFFGSLP--------DSWASGHSVPVVTVVRAMLNN 209 (232)
T ss_dssp HHHHHHHHHT----TCCSEEEEEECCEEECTTGGGS-HHHHHHHHHHCSCC--------TTGGGGTEEEHHHHHHHHHHH
T ss_pred HHHhhhcccc----ccccceEEecCceeecCCCcCc-HHHHHHHHHhhccC--------CcccCCCeEEHHHHHHHHHHH
Confidence 9999998876 365 489999999999866532 33344555544322 233444579999999999999
Q ss_pred hccCCCCCCCCCceEEEeCC
Q 012176 353 TGSGGKKRGPAQLRVYNLGN 372 (469)
Q Consensus 353 ~~~~~~~~~~~~~~iyni~~ 372 (469)
+.++.. ++++.+.+
T Consensus 210 ~~~~~~------~~~~i~~~ 223 (232)
T d2bkaa1 210 VVRPRD------KQMELLEN 223 (232)
T ss_dssp HTSCCC------SSEEEEEH
T ss_pred HhcCcc------CCeEEEcH
Confidence 877632 25665543
|
| >d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein At5g02240 (T7H20 290) species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.92 E-value=1.2e-24 Score=202.15 Aligned_cols=231 Identities=19% Similarity=0.159 Sum_probs=164.6
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCc--EEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCc
Q 012176 117 NGMTVLVTGAAGFVGSHCSLALKKRGDG--VLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPF 194 (469)
Q Consensus 117 ~~~~VlVtGatG~IG~~l~~~L~~~G~~--V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~ 194 (469)
++++|||||||||||+++++.|+++|++ |+.+.|..+ .... ...+++++.+|++|.+.+.++++++
T Consensus 2 ~~~tVlVtGatG~iG~~l~~~Ll~~g~~v~v~~~~R~~~---------~~~~-~~~~~~~~~~d~~~~~~~~~~~~~~-- 69 (252)
T d2q46a1 2 NLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQ---------GKEK-IGGEADVFIGDITDADSINPAFQGI-- 69 (252)
T ss_dssp SCCEEEEESTTSTTHHHHHHHHHHTTTTCEEEEEESCHH---------HHHH-TTCCTTEEECCTTSHHHHHHHHTTC--
T ss_pred CCCEEEEECCccHHHHHHHHHHHHCCCcEEEEEEcCCHH---------HHHh-ccCCcEEEEeeeccccccccccccc--
Confidence 4679999999999999999999999987 455566321 1111 2348899999999999999999988
Q ss_pred cEEEEcccccChhh-------------hccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcCccccCCCCCCCCCCCC
Q 012176 195 THVLHLAAQAGVRY-------------AMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESH 261 (469)
Q Consensus 195 d~Vih~Aa~~~~~~-------------~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~ 261 (469)
|+|||+|+...... ..........+|+.++.++++.+...... ++.+.|+..++......
T Consensus 70 d~vi~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~~~~~~------ 142 (252)
T d2q46a1 70 DALVILTSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQIDAAKVAGVK-HIVVVGSMGGTNPDHPL------ 142 (252)
T ss_dssp SEEEECCCCCCEECTTCCTTSCCCCCEECCTTCSHHHHTTHHHHHHHHHHHHHTCS-EEEEEEETTTTCTTCGG------
T ss_pred eeeEEEEeeccccccccchhhhhhcccccccchhhhccccccceeecccccccccc-ccccccccccCCCCccc------
Confidence 99999998643211 12334467788999999999999988886 88888887765432110
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHhCCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceEeccc
Q 012176 262 RTDQPASLYAATKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTY 341 (469)
Q Consensus 262 ~~~~p~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~ 341 (469)
.......|...+...+.+ ..+.|++++++||+++|||...... +.............+++|
T Consensus 143 -~~~~~~~~~~~~~~~~~~----~~~~~~~~~ilRp~~v~g~~~~~~~--------------~~~~~~~~~~~~~~~~i~ 203 (252)
T d2q46a1 143 -NKLGNGNILVWKRKAEQY----LADSGTPYTIIRAGGLLDKEGGVRE--------------LLVGKDDELLQTDTKTVP 203 (252)
T ss_dssp -GGGGGCCHHHHHHHHHHH----HHHSSSCEEEEEECEEECSCTTSSC--------------EEEESTTGGGGSSCCEEE
T ss_pred -ccccccchhhhhhhhhhh----hhcccccceeecceEEECCCcchhh--------------hhhccCcccccCCCCeEE
Confidence 012234566666655544 4447999999999999999654211 111110011344567999
Q ss_pred HHHHHHHHHHHhccCCCCCCCCCceEEEeCCCC---cccHHHHHHHHHHHhC
Q 012176 342 IDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTS---PVPVGRLVSILENLLN 390 (469)
Q Consensus 342 v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~---~vt~~el~~~i~~~~g 390 (469)
++|+|++++.+++++ .+.+++|||+++. ..++.|+.+++.++.+
T Consensus 204 ~~Dva~a~~~~l~~~-----~~~g~~~~i~~~~~~~~~~~~~~~~lf~~i~~ 250 (252)
T d2q46a1 204 RADVAEVCIQALLFE-----EAKNKAFDLGSKPEGTSTPTKDFKALFSQVTS 250 (252)
T ss_dssp HHHHHHHHHHHTTCG-----GGTTEEEEEEECCTTTSCCCCCHHHHHTTCCC
T ss_pred HHHHHHHHHHHhCCc-----cccCcEEEEeeCCCCCChhHHHHHHHHHHHHh
Confidence 999999999999887 3456999998743 4678888877765544
|
| >d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Negative transcriptional regulator NmrA species: Aspergillus nidulans [TaxId: 162425]
Probab=99.92 E-value=3.8e-24 Score=211.48 Aligned_cols=241 Identities=17% Similarity=0.096 Sum_probs=173.9
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCH-HHHHHhhccCCcc
Q 012176 117 NGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDA-PLLTKLFDVVPFT 195 (469)
Q Consensus 117 ~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~-~~l~~~~~~~~~d 195 (469)
++|+|+|||||||||++|+++|+++||+|+++.|+.+. . ........++++++.+|+.|. +.++.++.++ |
T Consensus 2 ~kktIlVtGatG~iG~~lv~~Ll~~G~~V~~l~R~~~~----~--~~~~~~~~~~v~~~~gD~~d~~~~~~~a~~~~--~ 73 (350)
T d1xgka_ 2 QKKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKG----L--IAEELQAIPNVTLFQGPLLNNVPLMDTLFEGA--H 73 (350)
T ss_dssp CCCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSCS----H--HHHHHHTSTTEEEEESCCTTCHHHHHHHHTTC--S
T ss_pred CCCEEEEECCChHHHHHHHHHHHhCCCeEEEEECCcch----h--hhhhhcccCCCEEEEeeCCCcHHHHHHHhcCC--c
Confidence 56899999999999999999999999999999996542 1 112233456899999999885 5578899888 8
Q ss_pred EEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcCccccCCCCCCCCCCCCCCCCCCChHHHHHH
Q 012176 196 HVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKK 275 (469)
Q Consensus 196 ~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y~~sK~ 275 (469)
+++++...... .|+..+.+++++|+++|+. ++|+.||......... .+...|..+|.
T Consensus 74 ~~~~~~~~~~~------------~~~~~~~~~~~aa~~agv~-~~v~~Ss~~~~~~~~~----------~~~~~~~~~k~ 130 (350)
T d1xgka_ 74 LAFINTTSQAG------------DEIAIGKDLADAAKRAGTI-QHYIYSSMPDHSLYGP----------WPAVPMWAPKF 130 (350)
T ss_dssp EEEECCCSTTS------------CHHHHHHHHHHHHHHHSCC-SEEEEEECCCGGGTSS----------CCCCTTTHHHH
T ss_pred eEEeecccccc------------hhhhhhhHHHHHHHHhCCC-ceEEEeeccccccCCc----------ccchhhhhhHH
Confidence 88877643221 2677889999999999987 7788887654432211 23456778888
Q ss_pred HHHHHHHHHHHHhCCcEEEEeecceecCCCCCCChHHHHH-HHHHcCCceEEEeeCCCCcceEecccH-HHHHHHHHHHh
Q 012176 276 AGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFFT-KDILQGKTIDVYKTQDDREVARDFTYI-DDVVKGCVGAT 353 (469)
Q Consensus 276 ~~E~~~~~~~~~~gi~~~ilRp~~v~Gp~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~v~v-~Dva~~~~~~~ 353 (469)
..|.++.+ .+++++++|++.+++......... +. .....+. . ....+.+++..++++++ +|+++++..++
T Consensus 131 ~~~~~~~~----~~~~~~~vr~~~~~~~~~~~~~~~--~~~~~~~~~~-~-~~~~~~~~~~~~~~i~~~~Dva~~v~~~l 202 (350)
T d1xgka_ 131 TVENYVRQ----LGLPSTFVYAGIYNNNFTSLPYPL--FQMELMPDGT-F-EWHAPFDPDIPLPWLDAEHDVGPALLQIF 202 (350)
T ss_dssp HHHHHHHT----SSSCEEEEEECEEGGGCBSSSCSS--CBEEECTTSC-E-EEEESSCTTSCEEEECHHHHHHHHHHHHH
T ss_pred HHHHHHHh----hccCceeeeeceeecccccccccc--cccccccccc-c-eeeecccCCCcceEEEeHHHHHHHHHHHH
Confidence 88876665 578999999999887532211110 00 0011122 1 12233567788888886 79999999998
Q ss_pred ccCCCCCCCCCceEEEeCCCCcccHHHHHHHHHHHhCCCccceeecC
Q 012176 354 GSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRM 400 (469)
Q Consensus 354 ~~~~~~~~~~~~~iyni~~~~~vt~~el~~~i~~~~g~~~~~~~~~~ 400 (469)
..+.. ...|++|+++++ .+|+.|+++.+.+++|++.++..+|.
T Consensus 203 ~~~~~---~~~G~~~~~~g~-~~T~~eia~~l~~~~G~~v~~~~vp~ 245 (350)
T d1xgka_ 203 KDGPQ---KWNGHRIALTFE-TLSPVQVCAAFSRALNRRVTYVQVPK 245 (350)
T ss_dssp HHCHH---HHTTCEEEECSE-EECHHHHHHHHHHHHTSCEEEEECSS
T ss_pred hCChh---hcCCeEEEEeCC-cCCHHHHHHHHHHHHCCcceEEECCH
Confidence 65421 124589999874 69999999999999999988777764
|
| >d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein PA4017 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.90 E-value=2.3e-23 Score=191.16 Aligned_cols=190 Identities=14% Similarity=0.087 Sum_probs=138.1
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHCCC--cEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCcc
Q 012176 118 GMTVLVTGAAGFVGSHCSLALKKRGD--GVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFT 195 (469)
Q Consensus 118 ~~~VlVtGatG~IG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~d 195 (469)
.|+|||||||||||++|+++|+++|+ +|+++.|..... .+. +..+..|..++.+.+.. .+|
T Consensus 2 ~KkIlItGatG~iG~~lv~~L~~~~~~~~v~~~~r~~~~~-------------~~~---~~~~~~d~~~~~~~~~~-~~d 64 (212)
T d2a35a1 2 PKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALAE-------------HPR---LDNPVGPLAELLPQLDG-SID 64 (212)
T ss_dssp CCEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSCCCC-------------CTT---EECCBSCHHHHGGGCCS-CCS
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCCCeEEEEEEeCCchhh-------------ccc---ccccccchhhhhhcccc-chh
Confidence 47999999999999999999999998 677777644211 113 33455555554444433 359
Q ss_pred EEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcCccccCCCCCCCCCCCCCCCCCCChHHHHHH
Q 012176 196 HVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKK 275 (469)
Q Consensus 196 ~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y~~sK~ 275 (469)
+|||++|.. .....+...+.+.|+.++.+++++|++.+++ +||++||.++++ .+.+.|+.+|.
T Consensus 65 ~vi~~~g~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~v~-~~i~~Ss~~~~~--------------~~~~~y~~~K~ 127 (212)
T d2a35a1 65 TAFCCLGTT--IKEAGSEEAFRAVDFDLPLAVGKRALEMGAR-HYLVVSALGADA--------------KSSIFYNRVKG 127 (212)
T ss_dssp EEEECCCCC--HHHHSSHHHHHHHHTHHHHHHHHHHHHTTCC-EEEEECCTTCCT--------------TCSSHHHHHHH
T ss_pred eeeeeeeee--ccccccccccccchhhhhhhccccccccccc-cccccccccccc--------------ccccchhHHHH
Confidence 999999863 2334566788999999999999999999987 999999988875 34578999999
Q ss_pred HHHHHHHHHHHHhCC-cEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceEecccHHHHHHHHHHHhc
Q 012176 276 AGEEIAHTYNHIYGL-ALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGATG 354 (469)
Q Consensus 276 ~~E~~~~~~~~~~gi-~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~~~~~~~~ 354 (469)
.+|+.+++ .++ +++|+||+.|||+....... . .. ..++... ....+.++|++|+|++++.+++
T Consensus 128 ~~E~~l~~----~~~~~~~I~Rp~~v~G~~~~~~~~--~----~~-~~~~~~~-----~~~~~~~i~v~DvA~ai~~~~~ 191 (212)
T d2a35a1 128 ELEQALQE----QGWPQLTIARPSLLFGPREEFRLA--E----IL-AAPIARI-----LPGKYHGIEACDLARALWRLAL 191 (212)
T ss_dssp HHHHHHTT----SCCSEEEEEECCSEESTTSCEEGG--G----GT-TCCCC---------CHHHHHHHHHHHHHHHHHHT
T ss_pred HHhhhccc----cccccceeeCCcceeCCcccccHH--H----HH-HHHHhhc-----cCCCCcEEEHHHHHHHHHHHHc
Confidence 99988765 355 59999999999997653211 1 11 2222111 1223567999999999999998
Q ss_pred cCC
Q 012176 355 SGG 357 (469)
Q Consensus 355 ~~~ 357 (469)
++.
T Consensus 192 ~~~ 194 (212)
T d2a35a1 192 EEG 194 (212)
T ss_dssp CCC
T ss_pred CCC
Confidence 763
|
| >d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.87 E-value=4.4e-21 Score=179.80 Aligned_cols=225 Identities=17% Similarity=0.140 Sum_probs=166.8
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccC-Cc
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV-PF 194 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~-~~ 194 (469)
.+||++|||||++.||+++++.|+++|++|++++|+.+ .+..... +..++..+.+|++|+++++++++.. ++
T Consensus 5 L~GK~~lITGas~GIG~aia~~la~~G~~V~~~~r~~~----~l~~~~~---~~~~~~~~~~Dv~d~~~v~~~~~~~g~i 77 (244)
T d1pr9a_ 5 LAGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQA----DLDSLVR---ECPGIEPVCVDLGDWEATERALGSVGPV 77 (244)
T ss_dssp CTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHH----HHHHHHH---HSTTCEEEECCTTCHHHHHHHHTTCCCC
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHH----HHHHHHH---hcCCCeEEEEeCCCHHHHHHHHHHhCCc
Confidence 68999999999999999999999999999999999542 2222222 2347889999999999999999876 68
Q ss_pred cEEEEcccccCh----hhhccChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEEcCccccCCCCCCCCCCCCCCCCC
Q 012176 195 THVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCKS----VNPQPSIVWASSSSVYGLNTQVPFSESHRTDQP 266 (469)
Q Consensus 195 d~Vih~Aa~~~~----~~~~~~~~~~~~~Nv~~~~~ll~aa~~----~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p 266 (469)
|++|||||.... ..+.++++..+++|+.++..+.+++.. .+..+++|++||...+.+. ..
T Consensus 78 DilVnnAg~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~~~~g~Ii~isS~~~~~~~------------~~ 145 (244)
T d1pr9a_ 78 DLLVNNAAVALLQPFLEVTKEAFDRSFEVNLRAVIQVSQIVARGLIARGVPGAIVNVSSQCSQRAV------------TN 145 (244)
T ss_dssp CEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSCC------------TT
T ss_pred eEEEeccccccccchhhhhHHHHHHHHHHhhhhhhHHHHHhhhHHHHhCCcceEeecccccccccc------------cc
Confidence 999999997443 233456678999999999988886533 2333489999997765422 23
Q ss_pred CChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceEecccHH
Q 012176 267 ASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYID 343 (469)
Q Consensus 267 ~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~ 343 (469)
...|+.+|.+.+.+++.++.++ ||+++.|.||.|..+.......-....+.+....|+. .+...+
T Consensus 146 ~~~Y~asKaal~~lt~~lA~el~~~gIrvN~I~PG~v~T~~~~~~~~~~~~~~~~~~~~pl~------------R~~~pe 213 (244)
T d1pr9a_ 146 HSVYCSTKGALDMLTKVMALELGPHKIRVNAVNPTVVMTSMGQATWSDPHKAKTMLNRIPLG------------KFAEVE 213 (244)
T ss_dssp BHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCSHHHHTTSCSHHHHHHHHTTCTTC------------SCBCHH
T ss_pred hhhhhhhHHHHHHHHHHHHHHhCCCcEEEEEEeeCcCcChHHhhhccChHHHHHHHhcCCCC------------CCcCHH
Confidence 4679999999999999998764 7999999999998763211111123344454444431 256689
Q ss_pred HHHHHHHHHhccCCCCCCCCCceEEEeCCCC
Q 012176 344 DVVKGCVGATGSGGKKRGPAQLRVYNLGNTS 374 (469)
Q Consensus 344 Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~ 374 (469)
|+|++++.++..... -..|+++.+.+|-
T Consensus 214 evA~~v~fL~S~~a~---~itG~~i~vDGG~ 241 (244)
T d1pr9a_ 214 HVVNAILFLLSDRSG---MTTGSTLPVEGGF 241 (244)
T ss_dssp HHHHHHHHHHSGGGT---TCCSCEEEESTTG
T ss_pred HHHHHHHHHhCchhC---CcCCcEEEECccH
Confidence 999999988754322 3456899888764
|
| >d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.87 E-value=1.8e-21 Score=182.12 Aligned_cols=225 Identities=18% Similarity=0.126 Sum_probs=165.2
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccC-Cc
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV-PF 194 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~-~~ 194 (469)
.++|++|||||++.||+.++++|+++|++|++.+|+++ .+.+.. .+..++..+.+|++|+++++++++.. ++
T Consensus 3 l~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~----~l~~~~---~~~~~~~~~~~Dv~~~~~v~~~~~~~g~i 75 (242)
T d1cyda_ 3 FSGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNS----DLVSLA---KECPGIEPVCVDLGDWDATEKALGGIGPV 75 (242)
T ss_dssp CTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHH----HHHHHH---HHSTTCEEEECCTTCHHHHHHHHTTCCCC
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHH----HHHHHH---HhcCCCeEEEEeCCCHHHHHHHHHHcCCC
Confidence 57899999999999999999999999999999998532 222222 22347889999999999999999876 68
Q ss_pred cEEEEcccccChh----hhccChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEEcCccccCCCCCCCCCCCCCCCCC
Q 012176 195 THVLHLAAQAGVR----YAMQNPQSYVASNIAGFVNLLEVCKS----VNPQPSIVWASSSSVYGLNTQVPFSESHRTDQP 266 (469)
Q Consensus 195 d~Vih~Aa~~~~~----~~~~~~~~~~~~Nv~~~~~ll~aa~~----~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p 266 (469)
|++|||||..... ...++++..+++|+.++..+.+++.. .+..+++|++||...+.+. ..
T Consensus 76 DilVnnAg~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~~~~g~ii~isS~~~~~~~------------~~ 143 (242)
T d1cyda_ 76 DLLVNNAALVIMQPFLEVTKEAFDRSFSVNLRSVFQVSQMVARDMINRGVPGSIVNVSSMVAHVTF------------PN 143 (242)
T ss_dssp SEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSCC------------TT
T ss_pred eEEEECCccccchhHHHHHHHHHHHHHHHHhccchHHHHHhchhhhhhcccCcccccchhhccccC------------Cc
Confidence 9999999974432 23455668899999999999886532 2333489999998765432 23
Q ss_pred CChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceEecccHH
Q 012176 267 ASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYID 343 (469)
Q Consensus 267 ~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~ 343 (469)
...|+.+|.+.+.+++.++.++ ||+++.|.||.|..|.......-+.+.+.+....|+ ..+..++
T Consensus 144 ~~~Y~asKaal~~lt~~lA~e~~~~gIrvN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~pl------------~R~~~pe 211 (242)
T d1cyda_ 144 LITYSSTKGAMTMLTKAMAMELGPHKIRVNSVNPTVVLTDMGKKVSADPEFARKLKERHPL------------RKFAEVE 211 (242)
T ss_dssp BHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBTTHHHHHHTCCHHHHHHHHHHSTT------------SSCBCHH
T ss_pred cccccchHHHHHHHHHHHHHHhCccCeecccCCCCCccCHHHHhhcCCHHHHHHHHhcCCC------------CCCcCHH
Confidence 4679999999999999998764 799999999998765211000002333444433333 1245689
Q ss_pred HHHHHHHHHhccCCCCCCCCCceEEEeCCCC
Q 012176 344 DVVKGCVGATGSGGKKRGPAQLRVYNLGNTS 374 (469)
Q Consensus 344 Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~ 374 (469)
|+|++++.++..... -..|+++.+.+|-
T Consensus 212 eva~~v~fL~S~~s~---~itG~~i~vDGG~ 239 (242)
T d1cyda_ 212 DVVNSILFLLSDRSA---STSGGGILVDAGY 239 (242)
T ss_dssp HHHHHHHHHHSGGGT---TCCSSEEEESTTG
T ss_pred HHHHHHHHHhCchhc---CcCCceEEeCcch
Confidence 999999988754321 3456999988763
|
| >d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Levodione reductase species: Corynebacterium aquaticum [TaxId: 144185]
Probab=99.87 E-value=1.3e-21 Score=184.93 Aligned_cols=228 Identities=14% Similarity=0.124 Sum_probs=166.6
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhh---ccCCeEEEEecCCCHHHHHHhhccC
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLL---QKHQVFIVEGDLNDAPLLTKLFDVV 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~---~~~~v~~v~~Dl~d~~~l~~~~~~~ 192 (469)
.++|+++||||++.||+.+++.|+++|++|++.+|+.+ .+........ ...++..+.+|++|+++++++++.+
T Consensus 2 l~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~----~l~~~~~~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~ 77 (258)
T d1iy8a_ 2 FTDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSE----GLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTAT 77 (258)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH----HHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH----HHHHHHHHHHhhCCCCeEEEEeccCCCHHHHHHHHHHH
Confidence 57899999999999999999999999999999999543 2222222221 2347889999999999999888764
Q ss_pred -----CccEEEEcccccCh-----hhhccChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEEcCccccCCCCCCCCC
Q 012176 193 -----PFTHVLHLAAQAGV-----RYAMQNPQSYVASNIAGFVNLLEVCK----SVNPQPSIVWASSSSVYGLNTQVPFS 258 (469)
Q Consensus 193 -----~~d~Vih~Aa~~~~-----~~~~~~~~~~~~~Nv~~~~~ll~aa~----~~~~~~~~V~~SS~~vyg~~~~~~~~ 258 (469)
++|++|||||.... ..+.++++..+++|+.++..+.+++. +.+. ++||++||.+.+-+.
T Consensus 78 ~~~~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~-G~Ii~isS~~~~~~~------ 150 (258)
T d1iy8a_ 78 TERFGRIDGFFNNAGIEGKQNPTESFTAAEFDKVVSINLRGVFLGLEKVLKIMREQGS-GMVVNTASVGGIRGI------ 150 (258)
T ss_dssp HHHHSCCSEEEECCCCCCCCBCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-CEEEEECCGGGTSBC------
T ss_pred HHHhCCCCEEEECCcccccCCchhhhhhhHHHHHhhhhccchhhhhhhhHhhhhhhcC-CCCcccccHhhccCC------
Confidence 68999999996432 12445667899999999999998753 3343 499999997765322
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCC------CCChHHHHHHHHHcCCceEEEee
Q 012176 259 ESHRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGR------PDMAYFFFTKDILQGKTIDVYKT 329 (469)
Q Consensus 259 E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~------~~~~~~~~~~~~~~g~~~~~~~~ 329 (469)
.....|+.+|.+.+.+++.++.++ ||+++.|.||.|..|... .......+.+.+....|+.
T Consensus 151 ------~~~~~Y~asKaal~~lt~~lA~el~~~gIrVN~i~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~pl~---- 220 (258)
T d1iy8a_ 151 ------GNQSGYAAAKHGVVGLTRNSAVEYGRYGIRINAIAPGAIWTPMVENSMKQLDPENPRKAAEEFIQVNPSK---- 220 (258)
T ss_dssp ------SSBHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSHHHHHHHHHHCTTCHHHHHHHHHTTCTTC----
T ss_pred ------CCchHHHHHHHHHHHHHHHHHHHhCccCceEEEEeeCcccCHHHHHHHhhcCcccHHHHHHHHHhcCCCC----
Confidence 235789999999999999998764 799999999999765211 0001123344444444432
Q ss_pred CCCCcceEecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCCc
Q 012176 330 QDDREVARDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTSP 375 (469)
Q Consensus 330 ~~~~~~~~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~~ 375 (469)
.+...+|+|++++.++..... -..|+++.+.+|..
T Consensus 221 --------R~~~p~dvA~~v~fL~S~~s~---~itG~~i~VDGG~s 255 (258)
T d1iy8a_ 221 --------RYGEAPEIAAVVAFLLSDDAS---YVNATVVPIDGGQS 255 (258)
T ss_dssp --------SCBCHHHHHHHHHHHTSGGGT---TCCSCEEEESTTTT
T ss_pred --------CCcCHHHHHHHHHHHhCchhc---CCcCceEEcCcchh
Confidence 245689999999988754322 34569999988764
|
| >d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (s)-1-phenylethanol dehydrogenase species: Azoarcus sp. ebn1 [TaxId: 76114]
Probab=99.87 E-value=6e-21 Score=179.15 Aligned_cols=227 Identities=11% Similarity=0.028 Sum_probs=158.8
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccC--
Q 012176 115 RPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV-- 192 (469)
Q Consensus 115 ~~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~-- 192 (469)
+.++|+++||||++.||+.+++.|+++|++|++.+|.+. +...... + ....++..+.+|++|+++++++++.+
T Consensus 2 rL~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~~~~~---~~~~~~~-~-~~g~~~~~~~~Dvs~~~~v~~~~~~~~~ 76 (247)
T d2ew8a1 2 RLKDKLAVITGGANGIGRAIAERFAVEGADIAIADLVPA---PEAEAAI-R-NLGRRVLTVKCDVSQPGDVEAFGKQVIS 76 (247)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCC---HHHHHHH-H-HTTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCch---HHHHHHH-H-HcCCcEEEEEeeCCCHHHHHHHHHHHHH
Confidence 478999999999999999999999999999999999654 1111111 1 12347899999999999999888754
Q ss_pred ---CccEEEEcccccCh----hhhccChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEEcCccccCCCCCCCCCCCC
Q 012176 193 ---PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCK----SVNPQPSIVWASSSSVYGLNTQVPFSESH 261 (469)
Q Consensus 193 ---~~d~Vih~Aa~~~~----~~~~~~~~~~~~~Nv~~~~~ll~aa~----~~~~~~~~V~~SS~~vyg~~~~~~~~E~~ 261 (469)
++|++|||||.... ..+.++++..+++|+.++..+.+++. +.+. ++||++||.....+.
T Consensus 77 ~~G~iDilVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~-G~Iv~isS~~~~~~~--------- 146 (247)
T d2ew8a1 77 TFGRCDILVNNAGIYPLIPFDELTFEQWKKTFEINVDSGFLMAKAFVPGMKRNGW-GRIINLTSTTYWLKI--------- 146 (247)
T ss_dssp HHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-EEEEEECCGGGGSCC---------
T ss_pred HcCCCCEEEECCCCCCCCChHhCCHHHhhhhheeehhhhhHHHHHHHhHHHhcCC-CCccccccchhcccC---------
Confidence 68999999997443 23446677899999999999988753 3443 389999997765322
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceEe
Q 012176 262 RTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARD 338 (469)
Q Consensus 262 ~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 338 (469)
.....|+.+|.+.+.+++.++.++ ||+++.|.||.|..+....... ....+..... ......
T Consensus 147 ---~~~~~Y~asKaal~~ltk~lA~ela~~gIrVN~I~PG~i~T~~~~~~~~-~~~~~~~~~~-----------~~~l~r 211 (247)
T d2ew8a1 147 ---EAYTHYISTKAANIGFTRALASDLGKDGITVNAIAPSLVRTATTEASAL-SAMFDVLPNM-----------LQAIPR 211 (247)
T ss_dssp ---SSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCC-------------------CT-----------TSSSCS
T ss_pred ---cccccchhhhccHHHHHHHHHHHhcccCeEEEEEeeCCCCCcccccccc-chhHHHHHHH-----------hccCCC
Confidence 234679999999999999998764 7999999999998764332110 0111111000 111123
Q ss_pred cccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCC
Q 012176 339 FTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTS 374 (469)
Q Consensus 339 ~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~ 374 (469)
+..++|+|++++.++..... -..|+++.+.+|-
T Consensus 212 ~~~pedvA~~v~fL~S~~s~---~itG~~i~vDGG~ 244 (247)
T d2ew8a1 212 LQVPLDLTGAAAFLASDDAS---FITGQTLAVDGGM 244 (247)
T ss_dssp CCCTHHHHHHHHHHTSGGGT---TCCSCEEEESSSC
T ss_pred CCCHHHHHHHHHHHhCchhc---CCcCCeEEECCCE
Confidence 55689999999988754322 2456999988764
|
| >d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase species: Bacillus megaterium [TaxId: 1404]
Probab=99.87 E-value=2.5e-21 Score=183.24 Aligned_cols=231 Identities=11% Similarity=0.045 Sum_probs=166.8
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhh-ccCCeEEEEecCCCHHHHHHhhccC--
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLL-QKHQVFIVEGDLNDAPLLTKLFDVV-- 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~v~~v~~Dl~d~~~l~~~~~~~-- 192 (469)
.++|+++||||++.||++++++|+++|++|++.+|..+. ..+....... ....+..+.+|++|+++++++++.+
T Consensus 5 L~gK~alITGas~GIG~aia~~la~~G~~Vv~~~r~~~~---~~~~~~~~~~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~ 81 (261)
T d1geea_ 5 LEGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKED---EANSVLEEIKKVGGEAIAVKGDVTVESDVINLVQSAIK 81 (261)
T ss_dssp GTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHH---HHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcHH---HHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHH
Confidence 678999999999999999999999999999999996531 1222222221 1346889999999999999888754
Q ss_pred ---CccEEEEcccccCh----hhhccChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEEcCccccCCCCCCCCCCCC
Q 012176 193 ---PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCK----SVNPQPSIVWASSSSVYGLNTQVPFSESH 261 (469)
Q Consensus 193 ---~~d~Vih~Aa~~~~----~~~~~~~~~~~~~Nv~~~~~ll~aa~----~~~~~~~~V~~SS~~vyg~~~~~~~~E~~ 261 (469)
++|++|||||.... +.+.++++..+++|+.++..+.+++. +.+....||++||.+.+.+.
T Consensus 82 ~~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~g~~Iv~isS~~~~~~~--------- 152 (261)
T d1geea_ 82 EFGKLDVMINNAGLENPVSSHEMSLSDWNKVIDTNLTGAFLGSREAIKYFVENDIKGTVINMSSVHEKIPW--------- 152 (261)
T ss_dssp HHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCEEEEECCGGGTSCC---------
T ss_pred HhCCCCEeeccceecCCcchhhcCHHHHHHHHHHhcccchhHHHHHhhhhccccccccccccccchhcccC---------
Confidence 78999999997443 23445667899999999998887753 34444369999997665322
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceEe
Q 012176 262 RTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARD 338 (469)
Q Consensus 262 ~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 338 (469)
.....|+.+|.+.+.+++.++.++ ||++++|.||.|..|.......-+.....+.+..|+. .
T Consensus 153 ---~~~~~Y~asKaal~~lt~~lA~e~~~~gIrVN~I~PG~v~T~~~~~~~~~~~~~~~~~~~~pl~------------R 217 (261)
T d1geea_ 153 ---PLFVHYAASKGGMKLMTETLALEYAPKGIRVNNIGPGAINTPINAEKFADPEQRADVESMIPMG------------Y 217 (261)
T ss_dssp ---TTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSGGGHHHHHSHHHHHHHHTTCTTS------------S
T ss_pred ---ccccccccCCccchhhHHHHHHHhhhhCcEEEEEeeCcCcCHhHhhhcCCHHHHHHHHhcCCCC------------C
Confidence 234679999999999999998764 8999999999997763221000122333444443331 2
Q ss_pred cccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCCcc
Q 012176 339 FTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTSPV 376 (469)
Q Consensus 339 ~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~~v 376 (469)
+..++|+|++++.++..... -..|+++.+.+|..+
T Consensus 218 ~~~pediA~~v~fL~S~~s~---~itG~~i~vDGG~sl 252 (261)
T d1geea_ 218 IGEPEEIAAVAAWLASSEAS---YVTGITLFADGGMTL 252 (261)
T ss_dssp CBCHHHHHHHHHHHHSGGGT---TCCSCEEEESTTGGG
T ss_pred CCCHHHHHHHHHHHhCchhc---CCcCCeEEECCCeeC
Confidence 45689999999988754321 345699999888643
|
| >d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative oxidoreductase Rv2002 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.86 E-value=3.8e-21 Score=179.96 Aligned_cols=218 Identities=16% Similarity=0.073 Sum_probs=162.3
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccC---
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~--- 192 (469)
.++|+++||||++.||+++++.|+++|++|++.+|+++ .++....+. ...+..+.+|++|+++++++++.+
T Consensus 4 L~gK~alITGas~GIG~aia~~la~~G~~V~~~~r~~~----~~~~~~~~~--~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 77 (244)
T d1nffa_ 4 LTGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDE----EGKAMAAEL--ADAARYVHLDVTQPAQWKAAVDTAVTA 77 (244)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH----HHHHHHHHT--GGGEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH----HHHHHHHHh--hCcceEEEeecCCHHHHHHHHHHHHHH
Confidence 68899999999999999999999999999999999543 222222222 236889999999999998888754
Q ss_pred --CccEEEEcccccCh----hhhccChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEEcCccccCCCCCCCCCCCCC
Q 012176 193 --PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCK----SVNPQPSIVWASSSSVYGLNTQVPFSESHR 262 (469)
Q Consensus 193 --~~d~Vih~Aa~~~~----~~~~~~~~~~~~~Nv~~~~~ll~aa~----~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~ 262 (469)
++|++|||||.... +...+++++.+++|+.++..+.+++. +.+. ++||++||...+.+.
T Consensus 78 ~g~idilinnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~-G~Ii~isS~~~~~~~---------- 146 (244)
T d1nffa_ 78 FGGLHVLVNNAGILNIGTIEDYALTEWQRILDVNLTGVFLGIRAVVKPMKEAGR-GSIINISSIEGLAGT---------- 146 (244)
T ss_dssp HSCCCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-EEEEEECCGGGTSCC----------
T ss_pred hCCCeEEEECCcccCCCchhhCCHHHHhHHhhcccchhhHHHHHHHhHHHhcCc-ceEEecccccccccc----------
Confidence 68999999997443 23345667899999999999988653 3343 489999997765322
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceEec
Q 012176 263 TDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDF 339 (469)
Q Consensus 263 ~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 339 (469)
.....|+.+|.+.+.+++.++.++ ||+++.|.||.|..|...... + .... .....+
T Consensus 147 --~~~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~i~T~~~~~~~------~-~~~~------------~pl~R~ 205 (244)
T d1nffa_ 147 --VACHGYTATKFAVRGLTKSTALELGPSGIRVNSIHPGLVKTPMTDWVP------E-DIFQ------------TALGRA 205 (244)
T ss_dssp --TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCSGGGTTSC------T-TCSC------------CSSSSC
T ss_pred --ccccchhhHHHHHHHHHHHHHHHhcccCEEEEEEeeCCccChhHhhhh------H-HHHh------------ccccCC
Confidence 234679999999999999998764 899999999999876332100 0 0001 111236
Q ss_pred ccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCC
Q 012176 340 TYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTS 374 (469)
Q Consensus 340 v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~ 374 (469)
..++|+|++++.++..... -..|+++.+.+|.
T Consensus 206 ~~p~diA~~v~fL~s~~s~---~itG~~i~vDGG~ 237 (244)
T d1nffa_ 206 AEPVEVSNLVVYLASDESS---YSTGAEFVVDGGT 237 (244)
T ss_dssp BCHHHHHHHHHHHHSGGGT---TCCSCEEEESTTG
T ss_pred CCHHHHHHHHHHHhChhhC---CCcCCEEEECCCe
Confidence 7899999999988754322 3456999998875
|
| >d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Gluconate 5-dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=99.86 E-value=2.2e-21 Score=182.52 Aligned_cols=227 Identities=16% Similarity=0.098 Sum_probs=164.8
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhc--cCCeEEEEecCCCHHHHHHhhccC-
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQ--KHQVFIVEGDLNDAPLLTKLFDVV- 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~--~~~v~~v~~Dl~d~~~l~~~~~~~- 192 (469)
.++|+++||||++.||+.+++.|+++|++|++.+|+.+. +.+......+ ..++..+.+|++|+++++++++.+
T Consensus 3 l~gK~~lITGas~GIG~aia~~la~~Ga~V~i~~r~~~~----~~~~~~~l~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~ 78 (251)
T d1vl8a_ 3 LRGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEE----ASEAAQKLTEKYGVETMAFRCDVSNYEEVKKLLEAVK 78 (251)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHH----HHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHH----HHHHHHHHHHHhCCcEEEEEccCCCHHHHHHHHHHHH
Confidence 578999999999999999999999999999999995542 2222222211 347889999999999999888764
Q ss_pred ----CccEEEEcccccCh----hhhccChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEEcCcccc-CCCCCCCCCC
Q 012176 193 ----PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCKS----VNPQPSIVWASSSSVY-GLNTQVPFSE 259 (469)
Q Consensus 193 ----~~d~Vih~Aa~~~~----~~~~~~~~~~~~~Nv~~~~~ll~aa~~----~~~~~~~V~~SS~~vy-g~~~~~~~~E 259 (469)
++|++|||||.... ..+.++++..+++|+.++..+.+++.. .+. +++|++||.... .+.
T Consensus 79 ~~~g~iDiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~-G~Ii~i~S~~~~~~~~------- 150 (251)
T d1vl8a_ 79 EKFGKLDTVVNAAGINRRHPAEEFPLDEFRQVIEVNLFGTYYVCREAFSLLRESDN-PSIINIGSLTVEEVTM------- 150 (251)
T ss_dssp HHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCSS-CEEEEECCGGGTCCCS-------
T ss_pred HHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhhhhhhhhhhhhhhccccccc-ccccccccchhccccC-------
Confidence 68999999997432 234556678999999999999987543 332 499999986542 211
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcce
Q 012176 260 SHRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVA 336 (469)
Q Consensus 260 ~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 336 (469)
.....|+.+|.+.+.+++.++.++ ||+++.|.||.|-.+.......-+...+.+.+..|+.
T Consensus 151 -----~~~~~Y~asKaal~~lt~~lA~e~~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~pl~----------- 214 (251)
T d1vl8a_ 151 -----PNISAYAASKGGVASLTKALAKEWGRYGIRVNVIAPGWYRTKMTEAVFSDPEKLDYMLKRIPLG----------- 214 (251)
T ss_dssp -----SSCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCSTTTHHHHTCHHHHHHHHHTCTTS-----------
T ss_pred -----ccccchHHHHHhHHHHHHHHHHHhcccCeEEEEEeeCcccCHHHHhccCCHHHHHHHHhcCCCC-----------
Confidence 234679999999999999998764 8999999999998764321100023344444444432
Q ss_pred EecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCC
Q 012176 337 RDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTS 374 (469)
Q Consensus 337 ~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~ 374 (469)
.+..++|+|++++.++..... -..|+++.+.+|-
T Consensus 215 -R~~~pedvA~~v~fL~S~~a~---~itG~~i~vDGG~ 248 (251)
T d1vl8a_ 215 -RTGVPEDLKGVAVFLASEEAK---YVTGQIIFVDGGW 248 (251)
T ss_dssp -SCBCGGGGHHHHHHHHSGGGT---TCCSCEEEESTTG
T ss_pred -CCCCHHHHHHHHHHHhCchhC---CCcCcEEEeCcCe
Confidence 234579999999988754321 3456999998764
|
| >d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein TTHA0369 species: Thermus thermophilus [TaxId: 274]
Probab=99.86 E-value=3.2e-21 Score=181.04 Aligned_cols=223 Identities=14% Similarity=0.045 Sum_probs=161.6
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccC---
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~--- 192 (469)
.++|++|||||++.||+++++.|+++|++|++.+|+++ . .+.. +..+...+++|++|+++++++++.+
T Consensus 3 l~GK~alITGas~GIG~aia~~la~~G~~V~~~~~~~~----~-~~~~----~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 73 (248)
T d2d1ya1 3 FAGKGVLVTGGARGIGRAIAQAFAREGALVALCDLRPE----G-KEVA----EAIGGAFFQVDLEDERERVRFVEEAAYA 73 (248)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTT----H-HHHH----HHHTCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH----H-HHHH----HHcCCeEEEEeCCCHHHHHHHHHHHHHh
Confidence 68999999999999999999999999999999999654 1 1111 1225678899999999998888765
Q ss_pred --CccEEEEcccccChh----hhccChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEEcCccccCCCCCCCCCCCCC
Q 012176 193 --PFTHVLHLAAQAGVR----YAMQNPQSYVASNIAGFVNLLEVCKS----VNPQPSIVWASSSSVYGLNTQVPFSESHR 262 (469)
Q Consensus 193 --~~d~Vih~Aa~~~~~----~~~~~~~~~~~~Nv~~~~~ll~aa~~----~~~~~~~V~~SS~~vyg~~~~~~~~E~~~ 262 (469)
++|++|||||..... .++++++..+++|+.++..+.+++.. .+. ++||++||...+.+.
T Consensus 74 ~G~iDiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~-G~Ii~isS~~~~~~~---------- 142 (248)
T d2d1ya1 74 LGRVDVLVNNAAIAAPGSALTVRLPEWRRVLEVNLTAPMHLSALAAREMRKVGG-GAIVNVASVQGLFAE---------- 142 (248)
T ss_dssp HSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTC-EEEEEECCGGGTSBC----------
T ss_pred cCCCCeEEEeCcCCCCCChhhCCHHHHHHHHHhhhhhHhhhhhhhccccccccc-ccccccccccccccc----------
Confidence 789999999974432 33456678999999999999988643 333 499999998765432
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCC----CCChHHHHHHHHHcCCceEEEeeCCCCcc
Q 012176 263 TDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGR----PDMAYFFFTKDILQGKTIDVYKTQDDREV 335 (469)
Q Consensus 263 ~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~----~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 335 (469)
.....|+.+|.+.+.+++.++.++ ||+++.|.||.|-.|... .......+.+.+....|+
T Consensus 143 --~~~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~pl----------- 209 (248)
T d2d1ya1 143 --QENAAYNASKGGLVNLTRSLALDLAPLRIRVNAVAPGAIATEAVLEAIALSPDPERTRRDWEDLHAL----------- 209 (248)
T ss_dssp --TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHHHHC--------CHHHHTTSTT-----------
T ss_pred --cccchhHHHHHHHHHHHHHHHHHhhhhCcEEEEEeeCCCCCchHHHHhhcCCCHHHHHHHHHhcCCC-----------
Confidence 345689999999999999998774 899999999998664110 000001122222222222
Q ss_pred eEecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCCc
Q 012176 336 ARDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTSP 375 (469)
Q Consensus 336 ~~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~~ 375 (469)
..+...+|+|++++.++..... -..|+++.+.+|-.
T Consensus 210 -~R~~~pedia~~v~fL~S~~s~---~itG~~i~vDGG~t 245 (248)
T d2d1ya1 210 -RRLGKPEEVAEAVLFLASEKAS---FITGAILPVDGGMT 245 (248)
T ss_dssp -SSCBCHHHHHHHHHHHHSGGGT---TCCSCEEEESTTGG
T ss_pred -CCCcCHHHHHHHHHHHhCchhc---CCCCcEEEcCcCcc
Confidence 2355689999999988754322 34569999988753
|
| >d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Escherichia coli [TaxId: 562]
Probab=99.86 E-value=3.1e-21 Score=180.62 Aligned_cols=223 Identities=13% Similarity=0.044 Sum_probs=164.5
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccC---
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~--- 192 (469)
.++|+++||||++.||+++++.|+++|++|++.+|+++ .++...... ..++..+.+|++|+++++++++.+
T Consensus 2 l~gK~alITGas~GIG~a~a~~l~~~G~~Vv~~~r~~~----~l~~~~~~~--~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 75 (243)
T d1q7ba_ 2 FEGKIALVTGASRGIGRAIAETLAARGAKVIGTATSEN----GAQAISDYL--GANGKGLMLNVTDPASIESVLEKIRAE 75 (243)
T ss_dssp CTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHH----HHHHHHHHH--GGGEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHH----HHHHHHHHh--CCCCcEEEEEecCHHHhhhhhhhhhcc
Confidence 57899999999999999999999999999999999543 222222222 236788999999999998888754
Q ss_pred --CccEEEEcccccChh----hhccChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEEcCccccCCCCCCCCCCCCC
Q 012176 193 --PFTHVLHLAAQAGVR----YAMQNPQSYVASNIAGFVNLLEVCK----SVNPQPSIVWASSSSVYGLNTQVPFSESHR 262 (469)
Q Consensus 193 --~~d~Vih~Aa~~~~~----~~~~~~~~~~~~Nv~~~~~ll~aa~----~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~ 262 (469)
++|++|||||..... ...++++..+++|+.++..+++++. +.+. ++||++||...+.+.
T Consensus 76 ~g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~-G~II~isS~~~~~~~---------- 144 (243)
T d1q7ba_ 76 FGEVDILVNNAGITRDNLLMRMKDEEWNDIIETNLSSVFRLSKAVMRAMMKKRH-GRIITIGSVVGTMGN---------- 144 (243)
T ss_dssp TCSCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-EEEEEECCHHHHHCC----------
T ss_pred cCCcceehhhhhhccccccccccccccccccceeechhhhhHHHHHHHHHHcCC-CEeeeecchhhcCCC----------
Confidence 689999999874432 2345666889999999999998764 3343 489999997665322
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceEec
Q 012176 263 TDQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDF 339 (469)
Q Consensus 263 ~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 339 (469)
.....|+.+|.+.+.+++.++.+ +||+++.|.||.|-.+..... .......+....|+ ..+
T Consensus 145 --~~~~~Y~asKaal~~lt~~lA~ela~~gIrVN~I~PG~i~T~~~~~~--~~~~~~~~~~~~pl------------~R~ 208 (243)
T d1q7ba_ 145 --GGQANYAAAKAGLIGFSKSLAREVASRGITVNVVAPGFIETDMTRAL--SDDQRAGILAQVPA------------GRL 208 (243)
T ss_dssp --TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHTS--CHHHHHHHHTTCTT------------SSC
T ss_pred --CCCHHHHHHHHHHHHHHHHHHHHhCccCeEEEEEecceEechhhhhh--hhhHHHHHHhcCCC------------CCC
Confidence 23568999999999999999876 489999999999876522111 12223334444333 124
Q ss_pred ccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCC
Q 012176 340 TYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTS 374 (469)
Q Consensus 340 v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~ 374 (469)
...+|+|++++.++..... -..|+++.+.+|.
T Consensus 209 ~~pedvA~~v~fL~S~~s~---~itGq~i~vdGG~ 240 (243)
T d1q7ba_ 209 GGAQEIANAVAFLASDEAA---YITGETLHVNGGM 240 (243)
T ss_dssp BCHHHHHHHHHHHHSGGGT---TCCSCEEEESTTS
T ss_pred CCHHHHHHHHHHHhCchhc---CCcCCeEEECCCe
Confidence 5689999999988754322 3456999998874
|
| >d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus [TaxId: 274]
Probab=99.86 E-value=2e-20 Score=174.94 Aligned_cols=222 Identities=15% Similarity=0.084 Sum_probs=165.2
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccC---
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~--- 192 (469)
.++|+++||||++.||+.++++|+++|++|++++|+.+ .++ ...+..+++.+.+|++|+++++++++.+
T Consensus 3 L~gK~~lITGas~GIG~aia~~l~~~G~~V~~~~r~~~----~l~----~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 74 (242)
T d1ulsa_ 3 LKDKAVLITGAAHGIGRATLELFAKEGARLVACDIEEG----PLR----EAAEAVGAHPVVMDVADPASVERGFAEALAH 74 (242)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHH----HHH----HHHHTTTCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH----HHH----HHHHHcCCeEEEEecCCHHHHHHHHHHHHHh
Confidence 67899999999999999999999999999999999532 122 2223447889999999999999888765
Q ss_pred --CccEEEEcccccCh----hhhccChHHHHHHHHHHHHHHHHHHHhc---CCCCeEEEEcCccccCCCCCCCCCCCCCC
Q 012176 193 --PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCKSV---NPQPSIVWASSSSVYGLNTQVPFSESHRT 263 (469)
Q Consensus 193 --~~d~Vih~Aa~~~~----~~~~~~~~~~~~~Nv~~~~~ll~aa~~~---~~~~~~V~~SS~~vyg~~~~~~~~E~~~~ 263 (469)
++|++|||||.... ..+.++++..+++|+.++..+.+++... .....++++||.+..+.
T Consensus 75 ~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~~~i~~~ss~~~~~~------------ 142 (242)
T d1ulsa_ 75 LGRLDGVVHYAGITRDNFHWKMPLEDWELVLRVNLTGSFLVAKAASEAMREKNPGSIVLTASRVYLGN------------ 142 (242)
T ss_dssp HSSCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCEEEEEECCGGGGCC------------
T ss_pred cCCceEEEECCcccccCchhhCcchhhhccccccchhhhhhhhhccccccccccceeeeeccccccCC------------
Confidence 68999999997443 2334566789999999999999876543 11226777777554331
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceEecc
Q 012176 264 DQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFT 340 (469)
Q Consensus 264 ~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v 340 (469)
.....|+.+|.+.+.+.+.++.++ ||+++.|.||.|-.+..... .....+.+....|+. .+.
T Consensus 143 -~~~~~Y~asKaal~~ltk~lA~ela~~gIrVN~I~PG~v~T~~~~~~--~~~~~~~~~~~~pl~------------R~~ 207 (242)
T d1ulsa_ 143 -LGQANYAASMAGVVGLTRTLALELGRWGIRVNTLAPGFIETRMTAKV--PEKVREKAIAATPLG------------RAG 207 (242)
T ss_dssp -TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTTSSS--CHHHHHHHHHTCTTC------------SCB
T ss_pred -CCCcchHHHHHHHHHHHHHHHHHHhhhCcEEEEEeeCcccChhhhcC--CHHHHHHHHhcCCCC------------CCC
Confidence 345689999999999999998764 79999999999987754332 133444555544442 245
Q ss_pred cHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCCc
Q 012176 341 YIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTSP 375 (469)
Q Consensus 341 ~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~~ 375 (469)
..+|+|++++.++..... -..|+++.+.+|..
T Consensus 208 ~pedia~~v~fL~S~~s~---~itG~~i~vDGG~t 239 (242)
T d1ulsa_ 208 KPLEVAYAALFLLSDESS---FITGQVLFVDGGRT 239 (242)
T ss_dssp CHHHHHHHHHHHHSGGGT---TCCSCEEEESTTTT
T ss_pred CHHHHHHHHHHHhchhhC---CCCCcEEEECCCcc
Confidence 689999999988754322 34569999988753
|
| >d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.86 E-value=3.2e-21 Score=179.81 Aligned_cols=215 Identities=15% Similarity=0.052 Sum_probs=159.5
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccC--
Q 012176 115 RPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV-- 192 (469)
Q Consensus 115 ~~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~-- 192 (469)
+.++|++|||||++.||++++++|+++|++|++++|+++. ...+..+.+|++|+++++++++.+
T Consensus 4 sl~gK~~lITGas~GIG~aia~~la~~Ga~V~~~~r~~~~--------------~~~~~~~~~Dv~~~~~v~~~~~~~~~ 69 (237)
T d1uzma1 4 PFVSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGA--------------PKGLFGVEVDVTDSDAVDRAFTAVEE 69 (237)
T ss_dssp CCCCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSSCC--------------CTTSEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCcch--------------hcCceEEEEecCCHHHHHHHHHHHHH
Confidence 4789999999999999999999999999999999997652 226778999999999998888765
Q ss_pred ---CccEEEEcccccChh----hhccChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEEcCccccCCCCCCCCCCCC
Q 012176 193 ---PFTHVLHLAAQAGVR----YAMQNPQSYVASNIAGFVNLLEVC----KSVNPQPSIVWASSSSVYGLNTQVPFSESH 261 (469)
Q Consensus 193 ---~~d~Vih~Aa~~~~~----~~~~~~~~~~~~Nv~~~~~ll~aa----~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~ 261 (469)
++|++|||||..... .+.++++..+++|+.++..+.+++ ++.+.. +||++||...+.+.
T Consensus 70 ~~g~iDiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~g-~Iv~isS~~~~~~~--------- 139 (237)
T d1uzma1 70 HQGPVEVLVSNAGLSADAFLMRMTEEKFEKVINANLTGAFRVAQRASRSMQRNKFG-RMIFIGSVSGLWGI--------- 139 (237)
T ss_dssp HHSSCSEEEEECSCCC-----CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCE-EEEEECCCCC-------------
T ss_pred hcCCceEEEeeecccccccHhhCCHHHHHHHHHhhhhhhhhhhhhhhhcccccCCC-ceEEEcchhhccCC---------
Confidence 689999999974432 234566789999999998888764 344443 89999997665322
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceEe
Q 012176 262 RTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARD 338 (469)
Q Consensus 262 ~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 338 (469)
.....|+.+|.+.+.+++.++.++ ||+++.|.||.|..+..... .....+.+.+..|+ ..
T Consensus 140 ---~~~~~Y~asKaal~~lt~~lA~e~~~~gIrVN~I~PG~v~T~~~~~~--~~~~~~~~~~~~pl------------~R 202 (237)
T d1uzma1 140 ---GNQANYAASKAGVIGMARSIARELSKANVTANVVAPGYIDTDMTRAL--DERIQQGALQFIPA------------KR 202 (237)
T ss_dssp ----CCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHHS--CHHHHHHHGGGCTT------------CS
T ss_pred ---cccHHHHHHHHHHHHHHHHHHhhhhcCCceeeeeeeCcCCChhhhcc--CHHHHHHHHhcCCC------------CC
Confidence 235689999999999999998764 89999999999976522110 01223333333332 12
Q ss_pred cccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCC
Q 012176 339 FTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNT 373 (469)
Q Consensus 339 ~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~ 373 (469)
+...+|+|++++.++..... -..|+++.+.+|
T Consensus 203 ~~~pedvA~~v~fL~S~~s~---~itG~~i~vdGG 234 (237)
T d1uzma1 203 VGTPAEVAGVVSFLASEDAS---YISGAVIPVDGG 234 (237)
T ss_dssp CBCHHHHHHHHHHHHSGGGT---TCCSCEEEESTT
T ss_pred CcCHHHHHHHHHHHhCchhc---CCcCCeEEECCC
Confidence 56789999999988754422 245699998876
|
| >d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=99.86 E-value=4.6e-21 Score=180.38 Aligned_cols=224 Identities=11% Similarity=0.057 Sum_probs=165.9
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhc-cCCeEEEEecCCCHHHHHHhhccC--
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQ-KHQVFIVEGDLNDAPLLTKLFDVV-- 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~v~~v~~Dl~d~~~l~~~~~~~-- 192 (469)
.++|++|||||++.||++++++|+++|++|++.+|+.+ .+.+....... ..++..+.+|++|+++++++++.+
T Consensus 8 lenKvalITGas~GIG~a~a~~la~~Ga~V~~~~r~~~----~l~~~~~~l~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~ 83 (251)
T d2c07a1 8 GENKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQK----SCDSVVDEIKSFGYESSGYAGDVSKKEEISEVINKILT 83 (251)
T ss_dssp CSSCEEEEESTTSHHHHHHHHHHTTTSSEEEEEESSHH----HHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHH----HHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999999543 22332332222 346899999999999999888764
Q ss_pred ---CccEEEEcccccChh----hhccChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEEcCccccCCCCCCCCCCCC
Q 012176 193 ---PFTHVLHLAAQAGVR----YAMQNPQSYVASNIAGFVNLLEVCK----SVNPQPSIVWASSSSVYGLNTQVPFSESH 261 (469)
Q Consensus 193 ---~~d~Vih~Aa~~~~~----~~~~~~~~~~~~Nv~~~~~ll~aa~----~~~~~~~~V~~SS~~vyg~~~~~~~~E~~ 261 (469)
++|++|||||..... ...++++..+++|+.++..+.+++. +.+. ++||++||...+.+.
T Consensus 84 ~~g~iDilvnnag~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~-G~IVnisS~~~~~~~--------- 153 (251)
T d2c07a1 84 EHKNVDILVNNAGITRDNLFLRMKNDEWEDVLRTNLNSLFYITQPISKRMINNRY-GRIINISSIVGLTGN--------- 153 (251)
T ss_dssp HCSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTC-EEEEEECCTHHHHCC---------
T ss_pred hcCCceeeeeccccccccccccccHHHHhhhheeeehhhhhhhhhcCcccccCCC-eEEEEECCHHhcCCC---------
Confidence 789999999974432 2345667899999999998888753 3443 499999997655322
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceEe
Q 012176 262 RTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARD 338 (469)
Q Consensus 262 ~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 338 (469)
.....|+.+|.+.+.+++.++.++ ||+++.|.||.|-.+..... ...+.+.+....|+. .
T Consensus 154 ---~~~~~Y~asKaal~~ltr~lA~el~~~gIrVN~V~PG~v~T~~~~~~--~~~~~~~~~~~~pl~------------R 216 (251)
T d2c07a1 154 ---VGQANYSSSKAGVIGFTKSLAKELASRNITVNAIAPGFISSDMTDKI--SEQIKKNIISNIPAG------------R 216 (251)
T ss_dssp ---TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCC-----C--CHHHHHHHHTTCTTS------------S
T ss_pred ---CCCHHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEccCCEeccccccc--CHHHHHHHHhcCCCC------------C
Confidence 235689999999999999998764 89999999999988754322 234555555554432 2
Q ss_pred cccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCC
Q 012176 339 FTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNT 373 (469)
Q Consensus 339 ~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~ 373 (469)
+...+|+|++++.++..... -..|+++.+.+|
T Consensus 217 ~~~pedvA~~v~fL~S~~s~---~itG~~i~vDGG 248 (251)
T d2c07a1 217 MGTPEEVANLACFLSSDKSG---YINGRVFVIDGG 248 (251)
T ss_dssp CBCHHHHHHHHHHHHSGGGT---TCCSCEEEESTT
T ss_pred CcCHHHHHHHHHHHhCchhC---CCcCcEEEECCC
Confidence 55689999999888754322 345689988876
|
| >d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: D(-)-3-hydroxybutyrate dehydrogenase species: Pseudomonas fragi [TaxId: 296]
Probab=99.86 E-value=3.1e-21 Score=182.64 Aligned_cols=233 Identities=13% Similarity=0.105 Sum_probs=160.0
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhh--ccCCeEEEEecCCCHHHHHHhhccC-
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLL--QKHQVFIVEGDLNDAPLLTKLFDVV- 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~v~~v~~Dl~d~~~l~~~~~~~- 192 (469)
.++|++|||||++.||++++++|+++|++|++.+|++. ...+....... ...++.++.+|++|+++++++++.+
T Consensus 2 L~gK~alITGas~GIG~aiA~~la~~Ga~V~~~~r~~~---~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~ 78 (260)
T d1x1ta1 2 LKGKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDA---AEIEKVRAGLAAQHGVKVLYDGADLSKGEAVRGLVDNAV 78 (260)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEECCSCH---HHHHHHHHHHHHHHTSCEEEECCCTTSHHHHHHHHHHHH
T ss_pred CCcCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCcH---HHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHH
Confidence 57899999999999999999999999999999998642 12222222221 2347889999999999999988764
Q ss_pred ----CccEEEEcccccChh----hhccChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEEcCccccCCCCCCCCCCC
Q 012176 193 ----PFTHVLHLAAQAGVR----YAMQNPQSYVASNIAGFVNLLEVC----KSVNPQPSIVWASSSSVYGLNTQVPFSES 260 (469)
Q Consensus 193 ----~~d~Vih~Aa~~~~~----~~~~~~~~~~~~Nv~~~~~ll~aa----~~~~~~~~~V~~SS~~vyg~~~~~~~~E~ 260 (469)
++|++|||||..... ...++++..+++|+.++..+++++ ++.+. ++||++||.+.+.+.
T Consensus 79 ~~~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~-G~Iv~isS~~~~~~~-------- 149 (260)
T d1x1ta1 79 RQMGRIDILVNNAGIQHTALIEDFPTEKWDAILALNLSAVFHGTAAALPHMKKQGF-GRIINIASAHGLVAS-------- 149 (260)
T ss_dssp HHHSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-EEEEEECCGGGTSCC--------
T ss_pred HHhCCCcEEEeecccccCCchhhhhHHhhhhhhhccccccccccchhhhhHhhcCC-ceEeecccccceecc--------
Confidence 689999999974432 334566789999999999888875 34443 399999997765432
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceE----EEeeCCCC
Q 012176 261 HRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTID----VYKTQDDR 333 (469)
Q Consensus 261 ~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~----~~~~~~~~ 333 (469)
.....|+.+|.+.+.+++.++.++ ||+++.|.||.|-.|.... ++.......... ........
T Consensus 150 ----~~~~~Y~asKaal~~lt~~lA~el~~~gIrVN~I~PG~i~T~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~ 219 (260)
T d1x1ta1 150 ----ANKSAYVAAKHGVVGFTKVTALETAGQGITANAICPGWVRTPLVEK------QISALAEKNGVDQETAARELLSEK 219 (260)
T ss_dssp ----TTCHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCBCC------------------------------CHHHH
T ss_pred ----CCcchhhhhhhhHHHhHHHHHHHhchhCcEEEEEecCCCCChhhhh------hhhhhhhhcCCChHHHHHHHHHhc
Confidence 335679999999999999998774 7999999999997763221 111000000000 00000000
Q ss_pred cceEecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCC
Q 012176 334 EVARDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNT 373 (469)
Q Consensus 334 ~~~~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~ 373 (469)
.....+...+|+|++++.++..... -..|+++.+.+|
T Consensus 220 ~Pl~R~g~pediA~~v~fL~S~~a~---~itG~~i~vDGG 256 (260)
T d1x1ta1 220 QPSLQFVTPEQLGGTAVFLASDAAA---QITGTTVSVDGG 256 (260)
T ss_dssp CTTCCCBCHHHHHHHHHHHHSGGGT---TCCSCEEEESTT
T ss_pred CCCCCCcCHHHHHHHHHHHhChhhC---CCcCCEEEECcc
Confidence 0112356799999999988754322 345699998887
|
| >d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sorbitol dehydrogenase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=99.86 E-value=5.2e-21 Score=180.59 Aligned_cols=229 Identities=14% Similarity=0.097 Sum_probs=165.6
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccC---
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~--- 192 (469)
.++|+++||||++.||+++++.|+++|++|++.+|+.+ .++....+. ..++..+.+|++|+++++++++.+
T Consensus 3 L~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~----~l~~~~~~~--~~~~~~~~~Dvt~~~~v~~~~~~~~~~ 76 (256)
T d1k2wa_ 3 LDGKTALITGSARGIGRAFAEAYVREGARVAIADINLE----AARATAAEI--GPAACAIALDVTDQASIDRCVAELLDR 76 (256)
T ss_dssp TTTEEEEEETCSSHHHHHHHHHHHHTTEEEEEEESCHH----HHHHHHHHH--CTTEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH----HHHHHHHHh--CCceEEEEeeCCCHHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999999543 222222222 347889999999999999888764
Q ss_pred --CccEEEEcccccChh----hhccChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEEcCccccCCCCCCCCCCCCC
Q 012176 193 --PFTHVLHLAAQAGVR----YAMQNPQSYVASNIAGFVNLLEVCK----SVNPQPSIVWASSSSVYGLNTQVPFSESHR 262 (469)
Q Consensus 193 --~~d~Vih~Aa~~~~~----~~~~~~~~~~~~Nv~~~~~ll~aa~----~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~ 262 (469)
++|++|||||..... ...++++..+++|+.++..+.+++. +.+..++||++||.+.+-+.
T Consensus 77 ~g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~~~~~~~~g~Iv~isS~~~~~~~---------- 146 (256)
T d1k2wa_ 77 WGSIDILVNNAALFDLAPIVEITRESYDRLFAINVSGTLFMMQAVARAMIAGGRGGKIINMASQAGRRGE---------- 146 (256)
T ss_dssp HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTSCC----------
T ss_pred hCCccEEEeecccccccccccCCHHHHHhhhceeeeccccchhhccchhHHhccCCccccccchhhcccc----------
Confidence 789999999974432 2345567899999999999988643 23333489999997765322
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCCCC---------ChHHHHHHHHHcCCceEEEeeC
Q 012176 263 TDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPD---------MAYFFFTKDILQGKTIDVYKTQ 330 (469)
Q Consensus 263 ~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~~~---------~~~~~~~~~~~~g~~~~~~~~~ 330 (469)
.....|+.+|.+.+.+++.++.++ ||+++.|.||.|-.|..... .......+.+...-|+
T Consensus 147 --~~~~~Y~asKaal~~lt~~lA~el~~~gIrVN~V~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pl------ 218 (256)
T d1k2wa_ 147 --ALVGVYCATKAAVISLTQSAGLNLIRHGINVNAIAPGVVDGEHWDGVDAKFADYENLPRGEKKRQVGAAVPF------ 218 (256)
T ss_dssp --TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCTTHHHHHHHHHHHHTCCTTHHHHHHHHHSTT------
T ss_pred --ccccchhhhhhHHHHHHHHHHHHhcccCeEEEEEecCCCCchhhhhhhhhhhhhccCChHHHHHHHHhcCCC------
Confidence 335689999999999999998764 89999999999887632100 0000112222222222
Q ss_pred CCCcceEecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCCccc
Q 012176 331 DDREVARDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTSPVP 377 (469)
Q Consensus 331 ~~~~~~~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~~vt 377 (469)
.-+...+|+|.+++.++..... -..|+++.+.+|..++
T Consensus 219 ------gR~~~p~evA~~v~fL~S~~a~---~iTG~~i~vDGG~~ms 256 (256)
T d1k2wa_ 219 ------GRMGRAEDLTGMAIFLATPEAD---YIVAQTYNVDGGNWMS 256 (256)
T ss_dssp ------SSCBCHHHHHHHHHHTTSGGGT---TCCSCEEEESTTSSCC
T ss_pred ------CCCcCHHHHHHHHHHHhCchhC---CccCceEEECcchhhC
Confidence 2245689999999988754321 3456999999887654
|
| >d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 7-alpha-hydroxysteroid dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=99.86 E-value=5.3e-21 Score=180.33 Aligned_cols=226 Identities=15% Similarity=0.159 Sum_probs=167.3
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhc-cCCeEEEEecCCCHHHHHHhhccC--
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQ-KHQVFIVEGDLNDAPLLTKLFDVV-- 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~v~~v~~Dl~d~~~l~~~~~~~-- 192 (469)
.++|+++||||++.||++++++|+++|++|++.+|+.+ .+.+....... ...+..+.+|++|+++++++++.+
T Consensus 9 L~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~----~~~~~~~~l~~~g~~~~~~~~Dvs~~~~~~~~~~~~~~ 84 (255)
T d1fmca_ 9 LDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINAD----AANHVVDEIQQLGGQAFACRCDITSEQELSALADFAIS 84 (255)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESCHH----HHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHH----HHHHHHHHHHHcCCcEEEEEccCCCHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999543 22222222222 347899999999999998888754
Q ss_pred ---CccEEEEcccccCh---hhhccChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEEcCccccCCCCCCCCCCCCC
Q 012176 193 ---PFTHVLHLAAQAGV---RYAMQNPQSYVASNIAGFVNLLEVCK----SVNPQPSIVWASSSSVYGLNTQVPFSESHR 262 (469)
Q Consensus 193 ---~~d~Vih~Aa~~~~---~~~~~~~~~~~~~Nv~~~~~ll~aa~----~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~ 262 (469)
++|++|||||.... +.++++++..+++|+.++..+.+++. +.+. +++|++||.+.+.+.
T Consensus 85 ~~g~iDilvnnAG~~~~~~~e~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~-g~Ii~isS~~~~~~~---------- 153 (255)
T d1fmca_ 85 KLGKVDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKNGG-GVILTITSMAAENKN---------- 153 (255)
T ss_dssp HHSSCCEEEECCCCCCCCCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-EEEEEECCGGGTCCC----------
T ss_pred HcCCCCEeeeCCcCCCCCcccCCHHHHHHHHHHHHHHhhhhHHHHHhhhccccc-cccccccccchhccc----------
Confidence 68999999997443 23445667899999999999888653 3343 389999997765432
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceEec
Q 012176 263 TDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDF 339 (469)
Q Consensus 263 ~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 339 (469)
.....|+.+|.+.+.+++.++.++ ||+++.|.||.|..+..... .-+...+.+.+..|+. .+
T Consensus 154 --~~~~~Y~asKaal~~lt~~lA~el~~~gIrVN~I~PG~i~T~~~~~~-~~~e~~~~~~~~~pl~------------R~ 218 (255)
T d1fmca_ 154 --INMTSYASSKAAASHLVRNMAFDLGEKNIRVNGIAPGAILTDALKSV-ITPEIEQKMLQHTPIR------------RL 218 (255)
T ss_dssp --TTCHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBCSHHHHTT-CCHHHHHHHHHTCSSC------------SC
T ss_pred --cccccchhHHHHHHHHHHHHHHHhCccCeEEEEeeeCcCcChHhhcc-CCHHHHHHHHhcCCCC------------CC
Confidence 345689999999999999998764 89999999999976522111 1123444444444432 24
Q ss_pred ccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCC
Q 012176 340 TYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTS 374 (469)
Q Consensus 340 v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~ 374 (469)
..++|+|++++.++..... -..|+++.+.+|.
T Consensus 219 g~pedvA~~v~fL~S~~s~---~itG~~i~vDGG~ 250 (255)
T d1fmca_ 219 GQPQDIANAALFLCSPAAS---WVSGQILTVSGGG 250 (255)
T ss_dssp BCHHHHHHHHHHHHSGGGT---TCCSCEEEESTTS
T ss_pred cCHHHHHHHHHHHhCchhc---CCcCCEEEECcCc
Confidence 5689999999998754321 3456999999886
|
| >d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: R-specific alcohol dehydrogenase species: Lactobacillus brevis [TaxId: 1580]
Probab=99.86 E-value=4e-21 Score=180.81 Aligned_cols=227 Identities=16% Similarity=0.096 Sum_probs=163.7
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccC---
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~--- 192 (469)
.++|++|||||++.||+++++.|+++|++|++.+|+.+ .++..........++.++.+|++|+++++++++.+
T Consensus 4 L~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~----~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 79 (251)
T d1zk4a1 4 LDGKVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSD----VGEKAAKSVGTPDQIQFFQHDSSDEDGWTKLFDATEKA 79 (251)
T ss_dssp TTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHH----HHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH----HHHHHHHHhCCCCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 68899999999999999999999999999999999543 33333333334558999999999999998888764
Q ss_pred --CccEEEEcccccChh----hhccChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEEcCccccCCCCCCCCCCCCC
Q 012176 193 --PFTHVLHLAAQAGVR----YAMQNPQSYVASNIAGFVNLLEVCKS----VNPQPSIVWASSSSVYGLNTQVPFSESHR 262 (469)
Q Consensus 193 --~~d~Vih~Aa~~~~~----~~~~~~~~~~~~Nv~~~~~ll~aa~~----~~~~~~~V~~SS~~vyg~~~~~~~~E~~~ 262 (469)
++|++|||||..... .+.++++..+++|+.++..+.+++.. .+...+||++||...+-+.
T Consensus 80 ~G~iDiLVnnAg~~~~~~~~~~~~~~~~~~~~vnl~g~~~~~~~~~~~m~~~~~gg~Ii~isS~~~~~~~---------- 149 (251)
T d1zk4a1 80 FGPVSTLVNNAGIAVNKSVEETTTAEWRKLLAVNLDGVFFGTRLGIQRMKNKGLGASIINMSSIEGFVGD---------- 149 (251)
T ss_dssp HSSCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSCEEEEEECCGGGTSCC----------
T ss_pred hCCceEEEeccccccccchhcccccchhhhccccccccchhHHHHHHHHHhcCCCCceEeeeccceeccC----------
Confidence 689999999974332 33455667999999999999987643 3333379999997665322
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHH-----hCCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceE
Q 012176 263 TDQPASLYAATKKAGEEIAHTYNHI-----YGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVAR 337 (469)
Q Consensus 263 ~~~p~~~Y~~sK~~~E~~~~~~~~~-----~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 337 (469)
.....|+.+|.+.+.+.+.++.+ +||+++.|.||.|..+....... ...........|+ .
T Consensus 150 --~~~~~Y~asKaal~~lt~~lA~e~~l~~~gIrVN~I~PG~i~T~~~~~~~~-~~~~~~~~~~~pl------------~ 214 (251)
T d1zk4a1 150 --PSLGAYNASKGAVRIMSKSAALDCALKDYDVRVNTVHPGYIKTPLVDDLPG-AEEAMSQRTKTPM------------G 214 (251)
T ss_dssp --TTCHHHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEEEECCBCCHHHHTSTT-HHHHHTSTTTCTT------------S
T ss_pred --CCchhHHHHHHHHhcchHHHHHHHhcCCCcEEEEEEeCCCCCChhHHhcCC-HHHHHHHHhCCCC------------C
Confidence 23468999999999999988754 47999999999997652211100 1111111111111 2
Q ss_pred ecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCC
Q 012176 338 DFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTS 374 (469)
Q Consensus 338 ~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~ 374 (469)
.+..++|+|++++.++..... -..|+++.+.+|-
T Consensus 215 R~~~pedvA~~v~fL~S~~s~---~itG~~i~vDGG~ 248 (251)
T d1zk4a1 215 HIGEPNDIAYICVYLASNESK---FATGSEFVVDGGY 248 (251)
T ss_dssp SCBCHHHHHHHHHHHHSGGGT---TCCSCEEEESTTG
T ss_pred CCcCHHHHHHHHHHHhCchhC---CCcCcEEEECccc
Confidence 356789999999988754322 3456899988763
|
| >d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Retinal dehydrogenase/reductase 3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.85 E-value=1.3e-20 Score=176.92 Aligned_cols=225 Identities=15% Similarity=0.053 Sum_probs=163.7
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccC--
Q 012176 115 RPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV-- 192 (469)
Q Consensus 115 ~~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~-- 192 (469)
+.++|++|||||++.||+++++.|+++|++|++++|+.+ .++.... +..++..+.+|++|+++++++++.+
T Consensus 3 rl~GK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~----~~~~~~~---~~~~~~~~~~Dvs~~~~v~~~~~~~~~ 75 (250)
T d1ydea1 3 RYAGKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDES----GGRALEQ---ELPGAVFILCDVTQEDDVKTLVSETIR 75 (250)
T ss_dssp TTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHH----HHHHHHH---HCTTEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH----HHHHHHH---hcCCCeEEEccCCCHHHHHHHHHHHHH
Confidence 478999999999999999999999999999999998532 2222221 2347889999999999999888765
Q ss_pred ---CccEEEEcccccCh-----hhhccChHHHHHHHHHHHHHHHHHHHhc---CCCCeEEEEcCccccCCCCCCCCCCCC
Q 012176 193 ---PFTHVLHLAAQAGV-----RYAMQNPQSYVASNIAGFVNLLEVCKSV---NPQPSIVWASSSSVYGLNTQVPFSESH 261 (469)
Q Consensus 193 ---~~d~Vih~Aa~~~~-----~~~~~~~~~~~~~Nv~~~~~ll~aa~~~---~~~~~~V~~SS~~vyg~~~~~~~~E~~ 261 (469)
++|++|||||.... ....++++..+++|+.++..+++++... +. +++|++||...+.+.
T Consensus 76 ~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~~-G~Ii~isS~~~~~~~--------- 145 (250)
T d1ydea1 76 RFGRLDCVVNNAGHHPPPQRPEETSAQGFRQLLELNLLGTYTLTKLALPYLRKSQ-GNVINISSLVGAIGQ--------- 145 (250)
T ss_dssp HHSCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEECCHHHHHCC---------
T ss_pred hcCCCCEEEecccccccccccccccHHHHHHHHHHhhhhHHHHHHHhhHHHHhCC-CCCcccccccccccc---------
Confidence 68999999996322 1234556789999999999998876432 21 489999997665322
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCC----CCCChHHHHHHHHHcCCceEEEeeCCCCc
Q 012176 262 RTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWG----RPDMAYFFFTKDILQGKTIDVYKTQDDRE 334 (469)
Q Consensus 262 ~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~----~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 334 (469)
.....|+.+|.+.+.+++.++.++ ||+++.|.||.|-.|.. .........++......|+
T Consensus 146 ---~~~~~Y~asKaal~~lt~~lA~e~a~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~pl---------- 212 (250)
T d1ydea1 146 ---AQAVPYVATKGAVTAMTKALALDESPYGVRVNCISPGNIWTPLWEELAALMPDPRASIREGMLAQPL---------- 212 (250)
T ss_dssp ---TTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCCHHHHHHHTTSSSHHHHHHHHHHTSTT----------
T ss_pred ---cCcchhHHHHhhHHHHHHHHHHHhcccCeEEEEEeeCCCCChhHHHHhhcCCCHHHHHHHHHhcCCC----------
Confidence 335689999999999999998764 89999999999865411 0001112233333333333
Q ss_pred ceEecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCCc
Q 012176 335 VARDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTSP 375 (469)
Q Consensus 335 ~~~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~~ 375 (469)
..+...+|+|++++.++.... -..|+++.+.+|..
T Consensus 213 --~R~g~p~eva~~v~fL~Sda~----~itG~~i~vDGG~~ 247 (250)
T d1ydea1 213 --GRMGQPAEVGAAAVFLASEAN----FCTGIELLVTGGAE 247 (250)
T ss_dssp --SSCBCHHHHHHHHHHHHHHCT----TCCSCEEEESTTTT
T ss_pred --CCCCCHHHHHHHHHHHhCccC----CCcCCeEEECCCcc
Confidence 135668999999988775322 34569999988754
|
| >d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Rhizome secoisolariciresinol dehydrogenase species: Mayapple (Podophyllum peltatum) [TaxId: 35933]
Probab=99.85 E-value=1.2e-20 Score=179.38 Aligned_cols=231 Identities=14% Similarity=0.104 Sum_probs=165.5
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccC---
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~--- 192 (469)
.++|++|||||++.||+.++++|+++|++|++++|+.+ .+++..........+.++.+|++|+++++++++.+
T Consensus 4 L~gKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~----~~~~~~~~l~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 79 (268)
T d2bgka1 4 LQDKVAIITGGAGGIGETTAKLFVRYGAKVVIADIADD----HGQKVCNNIGSPDVISFVHCDVTKDEDVRNLVDTTIAK 79 (268)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHH----HHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHH----HHHHHHHHhcCCCceEEEEccCCCHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999543 33444444444557888999999999999888754
Q ss_pred --CccEEEEcccccChh------hhccChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEEcCccccCCCCCCCCCCC
Q 012176 193 --PFTHVLHLAAQAGVR------YAMQNPQSYVASNIAGFVNLLEVCKS----VNPQPSIVWASSSSVYGLNTQVPFSES 260 (469)
Q Consensus 193 --~~d~Vih~Aa~~~~~------~~~~~~~~~~~~Nv~~~~~ll~aa~~----~~~~~~~V~~SS~~vyg~~~~~~~~E~ 260 (469)
++|++|||||..... ...++++..+++|+.++..+.+++.. .+. +++|++||...+....
T Consensus 80 ~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~-g~ii~iss~~~~~~~~------- 151 (268)
T d2bgka1 80 HGKLDIMFGNVGVLSTTPYSILEAGNEDFKRVMDINVYGAFLVAKHAARVMIPAKK-GSIVFTASISSFTAGE------- 151 (268)
T ss_dssp HSCCCEEEECCCCCCSSCSSTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHGGGTC-EEEEEECCGGGTCCCT-------
T ss_pred cCCcceeccccccccCCCcccccCcHHHHHHHHHHhhcchhhhhhhhcchHhhcCC-CCcccccccccccccc-------
Confidence 689999999964321 22345667899999999999887543 333 4899999976543221
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCCCC--ChHHHHHHHHHcCCceEEEeeCCCCcc
Q 012176 261 HRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPD--MAYFFFTKDILQGKTIDVYKTQDDREV 335 (469)
Q Consensus 261 ~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~~~ 335 (469)
.....|+.+|.+.+.+++.++.++ ||+++.|.||.|-.|..... ......-........ +
T Consensus 152 ----~~~~~Y~asKaal~~lt~~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~-~---------- 216 (268)
T d2bgka1 152 ----GVSHVYTATKHAVLGLTTSLCTELGEYGIRVNCVSPYIVASPLLTDVFGVDSSRVEELAHQAAN-L---------- 216 (268)
T ss_dssp ----TSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCCSCCCCTTSSSCCHHHHHHHHHHTCS-S----------
T ss_pred ----ccccccchhHHHHHhCHHHHHHHhChhCeEEEecCCCCccChHHhhhhcCCHHHHHHHHHhccc-c----------
Confidence 112379999999999999998764 89999999999988753321 111111111111111 0
Q ss_pred eEecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCCcc
Q 012176 336 ARDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTSPV 376 (469)
Q Consensus 336 ~~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~~v 376 (469)
...+..++|+|++++.++..... -..|+++.+.+|-..
T Consensus 217 ~gr~~~pedvA~~v~fL~S~~s~---~itGq~i~VDGG~t~ 254 (268)
T d2bgka1 217 KGTLLRAEDVADAVAYLAGDESK---YVSGLNLVIDGGYTR 254 (268)
T ss_dssp CSCCCCHHHHHHHHHHHHSGGGT---TCCSCEEEESTTGGG
T ss_pred CCCCcCHHHHHHHHHHHhChhhC---CccCceEEECcCccc
Confidence 11255689999999988754322 345699999887543
|
| >d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), II [TaxId: 4076]
Probab=99.85 E-value=1e-20 Score=178.77 Aligned_cols=229 Identities=14% Similarity=0.078 Sum_probs=165.9
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhc-cCCeEEEEecCCCHHHHHHhhccC-
Q 012176 115 RPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQ-KHQVFIVEGDLNDAPLLTKLFDVV- 192 (469)
Q Consensus 115 ~~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~v~~v~~Dl~d~~~l~~~~~~~- 192 (469)
+.++|++|||||++.||++++++|+++|++|++.+|+.+ .+.+....... ...+..+.+|++|+++++++++.+
T Consensus 5 ~L~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~----~l~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~ 80 (259)
T d2ae2a_ 5 NLEGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQK----ELNDCLTQWRSKGFKVEASVCDLSSRSERQELMNTVA 80 (259)
T ss_dssp CCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHH----HHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH----HHHHHHHHHHhcCCCceEEEeeCCCHHHHHHHHHHHH
Confidence 368999999999999999999999999999999999543 22332222222 346888999999999988777542
Q ss_pred -----CccEEEEcccccCh----hhhccChHHHHHHHHHHHHHHHHHHHhc---CCCCeEEEEcCccccCCCCCCCCCCC
Q 012176 193 -----PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCKSV---NPQPSIVWASSSSVYGLNTQVPFSES 260 (469)
Q Consensus 193 -----~~d~Vih~Aa~~~~----~~~~~~~~~~~~~Nv~~~~~ll~aa~~~---~~~~~~V~~SS~~vyg~~~~~~~~E~ 260 (469)
++|++|||||.... ..+.++++.++++|+.++..+.+++... ...++||++||.......
T Consensus 81 ~~~~~~idilvnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Ii~isS~~~~~~~-------- 152 (259)
T d2ae2a_ 81 NHFHGKLNILVNNAGIVIYKEAKDYTVEDYSLIMSINFEAAYHLSVLAHPFLKASERGNVVFISSVSGALAV-------- 152 (259)
T ss_dssp HHTTTCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTSSEEEEEECCGGGTSCC--------
T ss_pred HHhCCCceEEEECCceeccCccccCCHHHHHHHHhcccceeEEEEeeccchhhhhccccccccccccccccc--------
Confidence 58999999997433 2334566789999999999988876432 223499999997654322
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCC---CCCChHHHHHHHHHcCCceEEEeeCCCCc
Q 012176 261 HRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWG---RPDMAYFFFTKDILQGKTIDVYKTQDDRE 334 (469)
Q Consensus 261 ~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~---~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 334 (469)
.....|+.+|.+.+.+++.++.++ ||+++.|.||.|-.+.. ..+.......+.+....|+.
T Consensus 153 ----~~~~~Y~asKaal~~lt~~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~pl~--------- 219 (259)
T d2ae2a_ 153 ----PYEAVYGATKGAMDQLTRCLAFEWAKDNIRVNGVGPGVIATSLVEMTIQDPEQKENLNKLIDRCALR--------- 219 (259)
T ss_dssp ----TTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEECSBCSHHHHHHTTSHHHHHHHHHHHHTSTTC---------
T ss_pred ----ccccchHHHHHHHHHHHHHHHHHhCcCceEEEEeeeCcccCHHHHhhhhchhhHHHHHHHHhcCCCC---------
Confidence 335689999999999999998764 79999999999976521 11112233444454444432
Q ss_pred ceEecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCC
Q 012176 335 VARDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTS 374 (469)
Q Consensus 335 ~~~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~ 374 (469)
.+..++|+|++++.++..... -..|+++.+.+|-
T Consensus 220 ---R~g~pedvA~~v~fL~S~~s~---~itG~~i~VDGG~ 253 (259)
T d2ae2a_ 220 ---RMGEPKELAAMVAFLCFPAAS---YVTGQIIYVDGGL 253 (259)
T ss_dssp ---SCBCHHHHHHHHHHHHSGGGT---TCCSCEEEESTTG
T ss_pred ---CCcCHHHHHHHHHHHhCchhC---CCcCcEEEECCCe
Confidence 245689999999988754321 2456899888764
|
| >d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Xylitol dehydrogenase species: Gluconobacter oxydans [TaxId: 442]
Probab=99.85 E-value=1.9e-20 Score=177.02 Aligned_cols=227 Identities=15% Similarity=0.126 Sum_probs=164.9
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhc-cCCeEEEEecCCCHHHHHHhhccC-
Q 012176 115 RPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQ-KHQVFIVEGDLNDAPLLTKLFDVV- 192 (469)
Q Consensus 115 ~~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~v~~v~~Dl~d~~~l~~~~~~~- 192 (469)
+.++|+++||||++.||+++++.|+++|++|++++|+.+ .+......... ..++..+.+|++|+++++++++.+
T Consensus 2 rL~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~----~l~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~ 77 (260)
T d1zema1 2 KFNGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNRE----ALEKAEASVREKGVEARSYVCDVTSEEAVIGTVDSVV 77 (260)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH----HHHHHHHHHHTTTSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH----HHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHH
Confidence 368999999999999999999999999999999999543 22333222222 347889999999999999888764
Q ss_pred ----CccEEEEcccccCh-----hhhccChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEEcCccccCCCCCCCCCC
Q 012176 193 ----PFTHVLHLAAQAGV-----RYAMQNPQSYVASNIAGFVNLLEVCKS----VNPQPSIVWASSSSVYGLNTQVPFSE 259 (469)
Q Consensus 193 ----~~d~Vih~Aa~~~~-----~~~~~~~~~~~~~Nv~~~~~ll~aa~~----~~~~~~~V~~SS~~vyg~~~~~~~~E 259 (469)
++|++|||||.... +.+.++++..+++|+.++..+.+++.. .+. ++||++||...+.+.
T Consensus 78 ~~~g~iDilVnnaG~~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~m~~~~~-G~II~isS~~~~~~~------- 149 (260)
T d1zema1 78 RDFGKIDFLFNNAGYQGAFAPVQDYPSDDFARVLTINVTGAFHVLKAVSRQMITQNY-GRIVNTASMAGVKGP------- 149 (260)
T ss_dssp HHHSCCCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-EEEEEECCHHHHSCC-------
T ss_pred HHhCCCCeehhhhccccccCccccccHHHHHhhccccccccccchhhHHhhhhhhcC-CCCCeeechhhccCC-------
Confidence 68999999996432 234456678999999999999887532 333 499999997765322
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCC--------------CCCChHHHHHHHHHcCC
Q 012176 260 SHRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWG--------------RPDMAYFFFTKDILQGK 322 (469)
Q Consensus 260 ~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~--------------~~~~~~~~~~~~~~~g~ 322 (469)
.....|+.+|.+.+.+++.++.++ ||+++.|.||.|-.+.. ........+.+.+....
T Consensus 150 -----~~~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (260)
T d1zema1 150 -----PNMAAYGTSKGAIIALTETAALDLAPYNIRVNAISPGYMGPGFMWERQVELQAKVGSQYFSTDPKVVAQQMIGSV 224 (260)
T ss_dssp -----TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSSHHHHHHHHHHHHHTCTTSCSSHHHHHHHHHHTS
T ss_pred -----cchHHHHHHHHHHHHHHHHHHHHhhhhCCEEEEeccCcccCcchhhcchhhhhhhcccccccCHHHHHHHHHhcC
Confidence 234679999999999999998775 79999999999876521 01111233444444444
Q ss_pred ceEEEeeCCCCcceEecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCC
Q 012176 323 TIDVYKTQDDREVARDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNT 373 (469)
Q Consensus 323 ~~~~~~~~~~~~~~~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~ 373 (469)
|+. .+..++|+|.+++.++..... -..|+++.+.+|
T Consensus 225 Pl~------------R~g~pedvA~~v~fL~S~~s~---~itG~~i~VDGG 260 (260)
T d1zema1 225 PMR------------RYGDINEIPGVVAFLLGDDSS---FMTGVNLPIAGG 260 (260)
T ss_dssp TTS------------SCBCGGGSHHHHHHHHSGGGT---TCCSCEEEESCC
T ss_pred CCC------------CCcCHHHHHHHHHHHhCchhc---CccCCeEEeCCC
Confidence 432 245679999999988764321 345688887664
|
| >d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 15-hydroxyprostaglandin dehydrogenase, PGDH species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.85 E-value=1.8e-21 Score=183.66 Aligned_cols=227 Identities=15% Similarity=0.105 Sum_probs=161.6
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhc---cCCeEEEEecCCCHHHHHHhhccC-
Q 012176 117 NGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQ---KHQVFIVEGDLNDAPLLTKLFDVV- 192 (469)
Q Consensus 117 ~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~---~~~v~~v~~Dl~d~~~l~~~~~~~- 192 (469)
+||++|||||++.||+++++.|+++|++|++++|+.+ .+.+......+ ..++..+.+|++|+++++++++.+
T Consensus 2 ~GKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~----~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~ 77 (254)
T d2gdza1 2 NGKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLE----AGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVV 77 (254)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH----HHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH----HHHHHHHHHHHhcCCCcEEEEEeecCCHHHHHHHHHHHH
Confidence 6899999999999999999999999999999999543 22222333222 347899999999999999888754
Q ss_pred ----CccEEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHh----c--CCCCeEEEEcCccccCCCCCCCCCCCCC
Q 012176 193 ----PFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKS----V--NPQPSIVWASSSSVYGLNTQVPFSESHR 262 (469)
Q Consensus 193 ----~~d~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~----~--~~~~~~V~~SS~~vyg~~~~~~~~E~~~ 262 (469)
++|++|||||... ..++++.+++|+.++..+..++.. . +...+||++||.+.+-+.
T Consensus 78 ~~~G~iDilVnnAg~~~----~~~~~~~~~~n~~~~~~~~~~~~~~m~~~~~~~~g~Iv~isS~~~~~~~---------- 143 (254)
T d2gdza1 78 DHFGRLDILVNNAGVNN----EKNWEKTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMSSLAGLMPV---------- 143 (254)
T ss_dssp HHHSCCCEEEECCCCCC----SSSHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGGTSCC----------
T ss_pred HHcCCcCeecccccccc----cccchheeeeehhhHHHHHHHHHHHHHHhhcCCCcEEEeeccHhhccCC----------
Confidence 6899999999854 367889999999998888877543 2 222479999997765322
Q ss_pred CCCCCChHHHHHHHHHHHHHH--HHHH---hCCcEEEEeecceecCCCCC---CC---hHHHHHHHHHcCCceEEEeeCC
Q 012176 263 TDQPASLYAATKKAGEEIAHT--YNHI---YGLALTGLRFFTVYGPWGRP---DM---AYFFFTKDILQGKTIDVYKTQD 331 (469)
Q Consensus 263 ~~~p~~~Y~~sK~~~E~~~~~--~~~~---~gi~~~ilRp~~v~Gp~~~~---~~---~~~~~~~~~~~g~~~~~~~~~~ 331 (469)
.....|+.+|.+.+.+++. ++.+ +||+++.|+||.|-.|.... +. ....+.+.+...-|+
T Consensus 144 --~~~~~Y~asKaal~~ltrs~ala~e~~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~~p~------- 214 (254)
T d2gdza1 144 --AQQPVYCASKHGIVGFTRSAALAANLMNSGVRLNAICPGFVNTAILESIEKEENMGQYIEYKDHIKDMIKY------- 214 (254)
T ss_dssp --TTCHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEESCBSSHHHHGGGCHHHHGGGGGGHHHHHHHHHH-------
T ss_pred --CCccchHHHHHHHHHHHHHHHHHHHhcCCCEEEEEEEcCCCCChhhhhccccccccccHHHHHHHHhcCCC-------
Confidence 3346799999999999886 3433 58999999999986541100 00 000011111111111
Q ss_pred CCcceEecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCCcccHHH
Q 012176 332 DREVARDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTSPVPVGR 380 (469)
Q Consensus 332 ~~~~~~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~~vt~~e 380 (469)
..+...+|+|++++.++.++ ...|+++.+.+|..+.+.|
T Consensus 215 -----~r~~~pedvA~~v~fL~s~~-----~itG~~i~VdGG~~~~~~~ 253 (254)
T d2gdza1 215 -----YGILDPPLIANGLITLIEDD-----ALNGAIMKITTSKGIHFQD 253 (254)
T ss_dssp -----HCCBCHHHHHHHHHHHHHCT-----TCSSCEEEEETTTEEEECC
T ss_pred -----CCCcCHHHHHHHHHHHHcCC-----CCCCCEEEECCCCeeeccc
Confidence 12456799999999998764 3556999999987766543
|
| >d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase species: Streptomyces hydrogenans [TaxId: 1905]
Probab=99.85 E-value=2.8e-20 Score=175.00 Aligned_cols=223 Identities=13% Similarity=0.047 Sum_probs=160.0
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccC---
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~--- 192 (469)
.++|++|||||++.||++++++|+++|++|++++|+.+ .+.....+. ...+.++.+|++|+++++++++.+
T Consensus 3 L~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~----~~~~~~~~~--~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 76 (254)
T d1hdca_ 3 LSGKTVIITGGARGLGAEAARQAVAAGARVVLADVLDE----EGAATAREL--GDAARYQHLDVTIEEDWQRVVAYAREE 76 (254)
T ss_dssp CCCSEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH----HHHHHHHTT--GGGEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHH----HHHHHHHHh--CCceEEEEcccCCHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999542 222222222 237899999999999999888754
Q ss_pred --CccEEEEcccccChh----hhccChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEEcCccccCCCCCCCCCCCCC
Q 012176 193 --PFTHVLHLAAQAGVR----YAMQNPQSYVASNIAGFVNLLEVCK----SVNPQPSIVWASSSSVYGLNTQVPFSESHR 262 (469)
Q Consensus 193 --~~d~Vih~Aa~~~~~----~~~~~~~~~~~~Nv~~~~~ll~aa~----~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~ 262 (469)
++|++|||||..... ...++++..+++|+.++..+++++. +.+. ++||++||...+.+.
T Consensus 77 ~g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~p~m~~~~~-G~II~isS~~~~~~~---------- 145 (254)
T d1hdca_ 77 FGSVDGLVNNAGISTGMFLETESVERFRKVVEINLTGVFIGMKTVIPAMKDAGG-GSIVNISSAAGLMGL---------- 145 (254)
T ss_dssp HSCCCEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-EEEEEECCGGGTSCC----------
T ss_pred cCCccEEEecCccccccccccccccccchhhhHHhhHHHHHHHHHHHHHhhcCC-Ceecccccchhcccc----------
Confidence 689999999974432 3345566899999999999988764 3443 499999997765322
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceEec
Q 012176 263 TDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDF 339 (469)
Q Consensus 263 ~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 339 (469)
.....|+.+|.+.+.+++.++.++ ||+++.|.||.|..+. .........-... .......+
T Consensus 146 --~~~~~Y~asKaal~~lt~~lA~e~a~~gIrVN~I~PG~v~T~~----------~~~~~~~~~~~~~----~~~pl~R~ 209 (254)
T d1hdca_ 146 --ALTSSYGASKWGVRGLSKLAAVELGTDRIRVNSVHPGMTYTPM----------TAETGIRQGEGNY----PNTPMGRV 209 (254)
T ss_dssp --TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHH----------HHHHTCCCSTTSC----TTSTTSSC
T ss_pred --cchhhHHHHHHHHHHHHHHHHHHhCCCceEEEEeeeCcccCcc----------chhcCHHHHHHHH----hCCCCCCC
Confidence 335689999999999999999764 7999999999986641 1111111000000 00001112
Q ss_pred -ccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCC
Q 012176 340 -TYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTS 374 (469)
Q Consensus 340 -v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~ 374 (469)
+..+|+|.+++.++..... -..|+++.+.+|-
T Consensus 210 g~~PedvA~~v~fL~S~~a~---~itG~~i~vDGG~ 242 (254)
T d1hdca_ 210 GNEPGEIAGAVVKLLSDTSS---YVTGAELAVDGGW 242 (254)
T ss_dssp B-CHHHHHHHHHHHHSGGGT---TCCSCEEEESTTT
T ss_pred CCCHHHHHHHHHHHhchhhC---CCCCceEEeCCCc
Confidence 3479999999988754322 3456999998874
|
| >d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Streptomyces coelicolor [TaxId: 1902]
Probab=99.85 E-value=1.7e-20 Score=177.19 Aligned_cols=225 Identities=17% Similarity=0.125 Sum_probs=166.2
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhc-cCCeEEEEecCCCHHHHHHhhccC---
Q 012176 117 NGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQ-KHQVFIVEGDLNDAPLLTKLFDVV--- 192 (469)
Q Consensus 117 ~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~v~~v~~Dl~d~~~l~~~~~~~--- 192 (469)
.+|++|||||++.||++++++|+++|++|++.+|+.+ .+.+....... ...+..+.+|++|+++++++++.+
T Consensus 1 DgKValITGas~GIG~aia~~la~~Ga~V~i~~r~~~----~l~~~~~~l~~~g~~~~~~~~Dvs~~~~v~~~~~~~~~~ 76 (257)
T d2rhca1 1 DSEVALVTGATSGIGLEIARRLGKEGLRVFVCARGEE----GLRTTLKELREAGVEADGRTCDVRSVPEIEALVAAVVER 76 (257)
T ss_dssp CCCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHH----HHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH----HHHHHHHHHHhcCCcEEEEEeecCCHHHHHHHHHHHHHH
Confidence 4789999999999999999999999999999999543 23332222222 347899999999999998888754
Q ss_pred --CccEEEEcccccCh----hhhccChHHHHHHHHHHHHHHHHHHHh------cCCCCeEEEEcCccccCCCCCCCCCCC
Q 012176 193 --PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCKS------VNPQPSIVWASSSSVYGLNTQVPFSES 260 (469)
Q Consensus 193 --~~d~Vih~Aa~~~~----~~~~~~~~~~~~~Nv~~~~~ll~aa~~------~~~~~~~V~~SS~~vyg~~~~~~~~E~ 260 (469)
++|++|||||.... +...++++..+++|+.++..+++++.. .+. .++|++||...+.+.
T Consensus 77 ~g~iDilVnnAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~~~~~~~~~-g~Ii~i~S~~~~~~~-------- 147 (257)
T d2rhca1 77 YGPVDVLVNNAGRPGGGATAELADELWLDVVETNLTGVFRVTKQVLKAGGMLERGT-GRIVNIASTGGKQGV-------- 147 (257)
T ss_dssp TCSCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTTSHHHHTE-EEEEEECCGGGTSCC--------
T ss_pred hCCCCEEEecccccCCCChHHcCHHHHHHHHHHHhhhhhHHHHHHhHHHHHHhcCC-ccccccccccccccc--------
Confidence 68999999997443 234456678999999999999998754 233 389999997765332
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCC---------CCChHHHHHHHHHcCCceEEEe
Q 012176 261 HRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGR---------PDMAYFFFTKDILQGKTIDVYK 328 (469)
Q Consensus 261 ~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~---------~~~~~~~~~~~~~~g~~~~~~~ 328 (469)
.....|+.+|.+.+.+++.++.++ ||+++.|.||.|-.|... .........+.+.+..|+.
T Consensus 148 ----~~~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~e~~~~~~~~~Plg--- 220 (257)
T d2rhca1 148 ----VHAAPYSASKHGVVGFTKALGLELARTGITVNAVCPGFVETPMAASVREHYSDIWEVSTEEAFDRITARVPIG--- 220 (257)
T ss_dssp ----TTCHHHHHHHHHHHHHHHHHHHHTTTSEEEEEEEEECSBCSHHHHHHHHHHHHHTTCCHHHHHHHHHTTSTTS---
T ss_pred ----ccchhHHHHHHHHHHHHHHHHHHhhhhCcEEEEEeeCCCCCHHHHHHHhhhhhhcccChHHHHHHHHhcCCCC---
Confidence 235679999999999999999875 799999999998654210 0111234455555554442
Q ss_pred eCCCCcceEecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCC
Q 012176 329 TQDDREVARDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNT 373 (469)
Q Consensus 329 ~~~~~~~~~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~ 373 (469)
-+...+|+|++++.++..... -..|+++.+.+|
T Consensus 221 ---------R~~~pedia~~v~fL~S~~s~---~itG~~i~vDGG 253 (257)
T d2rhca1 221 ---------RYVQPSEVAEMVAYLIGPGAA---AVTAQALNVCGG 253 (257)
T ss_dssp ---------SCBCHHHHHHHHHHHTSGGGT---TCCSCEEEESTT
T ss_pred ---------CCcCHHHHHHHHHHHhCchhc---CCcCceEEECcC
Confidence 246689999999988754322 345699988876
|
| >d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.85 E-value=9.6e-21 Score=178.97 Aligned_cols=226 Identities=16% Similarity=0.111 Sum_probs=149.9
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhh-ccCCeEEEEecCCCHHHHHHhhccC--
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLL-QKHQVFIVEGDLNDAPLLTKLFDVV-- 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~v~~v~~Dl~d~~~l~~~~~~~-- 192 (469)
.++|++|||||++.||+.++++|+++|++|++++|+.+ .+.+...... ...++..+.+|++|+++++++++.+
T Consensus 6 LkgK~alVTGas~GIG~aiA~~la~~Ga~V~~~~r~~~----~l~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 81 (259)
T d1xq1a_ 6 LKAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEY----ELNECLSKWQKKGFQVTGSVCDASLRPEREKLMQTVSS 81 (259)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHH----HHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH----HHHHHHHHHHhcCCceEEEeccCCCHHHHHHHHHHHHH
Confidence 57999999999999999999999999999999999653 2222222222 2347899999999999988877543
Q ss_pred ----CccEEEEcccccChh----hhccChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEEcCccccCCCCCCCCCCC
Q 012176 193 ----PFTHVLHLAAQAGVR----YAMQNPQSYVASNIAGFVNLLEVCK----SVNPQPSIVWASSSSVYGLNTQVPFSES 260 (469)
Q Consensus 193 ----~~d~Vih~Aa~~~~~----~~~~~~~~~~~~Nv~~~~~ll~aa~----~~~~~~~~V~~SS~~vyg~~~~~~~~E~ 260 (469)
++|++|||||..... ...++++..+++|+.++..+++++. +.+. ++||++||.....+.
T Consensus 82 ~~~g~idilvnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~-G~Iv~isS~~~~~~~-------- 152 (259)
T d1xq1a_ 82 MFGGKLDILINNLGAIRSKPTLDYTAEDFSFHISTNLESAYHLSQLAHPLLKASGC-GNIIFMSSIAGVVSA-------- 152 (259)
T ss_dssp HHTTCCSEEEEECCC------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS-CEEEEEC----------------
T ss_pred HhCCCcccccccccccCCCchhhCCHHHHHHHHHHHhhhheeeehhhhhccccccc-ccccccccccccccc--------
Confidence 489999999974432 3345667899999999999988754 3444 399999997654322
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceE
Q 012176 261 HRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVAR 337 (469)
Q Consensus 261 ~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 337 (469)
.....|+.+|.+.+.+++.++.++ ||++++|.||.|-.|..... ......+.+....|+ .
T Consensus 153 ----~~~~~Y~asKaal~~lt~~lA~e~~~~gIrVN~V~PG~i~T~~~~~~-~~~~~~~~~~~~~pl------------~ 215 (259)
T d1xq1a_ 153 ----SVGSIYSATKGALNQLARNLACEWASDGIRANAVAPAVIATPLAEAV-YDDEFKKVVISRKPL------------G 215 (259)
T ss_dssp ------CCHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEECCSCC------------------------------------
T ss_pred ----cccccccccccchhhhhHHHHHHhcccCeEEEEeccCcccCHHhhhh-chHHHHHHHHhCCCC------------C
Confidence 345789999999999999998764 89999999999977643211 001122222222222 2
Q ss_pred ecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCC
Q 012176 338 DFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTS 374 (469)
Q Consensus 338 ~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~ 374 (469)
.+..++|+|.+++.++..... -..|+++.+.+|-
T Consensus 216 R~~~pedvA~~v~fL~S~~s~---~iTG~~i~vDGG~ 249 (259)
T d1xq1a_ 216 RFGEPEEVSSLVAFLCMPAAS---YITGQTICVDGGL 249 (259)
T ss_dssp --CCGGGGHHHHHHHTSGGGT---TCCSCEEECCCCE
T ss_pred CCcCHHHHHHHHHHHhCchhc---CCcCcEEEeCCCE
Confidence 345679999999988754321 3456888888774
|
| >d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: meso-2,3-butanediol dehydrogenase species: Klebsiella pneumoniae [TaxId: 573]
Probab=99.84 E-value=1.7e-20 Score=177.02 Aligned_cols=226 Identities=17% Similarity=0.099 Sum_probs=161.5
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhc-cCCeEEEEecCCCHHHHHHhhccC----
Q 012176 118 GMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQ-KHQVFIVEGDLNDAPLLTKLFDVV---- 192 (469)
Q Consensus 118 ~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~v~~v~~Dl~d~~~l~~~~~~~---- 192 (469)
+|.+|||||++.||+.++++|+++|++|++.+|+.+ .++........ ..++..+.+|++|+++++++++.+
T Consensus 1 KKValITGas~GIG~aia~~la~~Ga~V~~~~r~~~----~l~~~~~~i~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 76 (255)
T d1gega_ 1 KKVALVTGAGQGIGKAIALRLVKDGFAVAIADYNDA----TAKAVASEINQAGGHAVAVKVDVSDRDQVFAAVEQARKTL 76 (255)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH----HHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHT
T ss_pred CCEEEEcCCccHHHHHHHHHHHHCCCEEEEEECCHH----HHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHHh
Confidence 366799999999999999999999999999999543 22222222222 347889999999999998888754
Q ss_pred -CccEEEEcccccCh----hhhccChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEEcCccccCCCCCCCCCCCCCC
Q 012176 193 -PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCK----SVNPQPSIVWASSSSVYGLNTQVPFSESHRT 263 (469)
Q Consensus 193 -~~d~Vih~Aa~~~~----~~~~~~~~~~~~~Nv~~~~~ll~aa~----~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~ 263 (469)
++|++|||||.... ..+.++++..+++|+.++..+++++. +.+...+||++||.+.+.+.
T Consensus 77 g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~~g~Iv~isS~~~~~~~----------- 145 (255)
T d1gega_ 77 GGFDVIVNNAGVAPSTPIESITPEIVDKVYNINVKGVIWGIQAAVEAFKKEGHGGKIINACSQAGHVGN----------- 145 (255)
T ss_dssp TCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTSCC-----------
T ss_pred CCccEEEecccccccCcHHHhhhhhhhhhhhhcccchhhhhhhhcchhhhhccccccccccchhhcccC-----------
Confidence 68999999997432 23345567899999999999988753 34444479999997765322
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCCC---------CChHHHHHHHHHcCCceEEEeeCC
Q 012176 264 DQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRP---------DMAYFFFTKDILQGKTIDVYKTQD 331 (469)
Q Consensus 264 ~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~~---------~~~~~~~~~~~~~g~~~~~~~~~~ 331 (469)
.....|+.+|.+.+.+++.++.++ ||+++.|.||.|-.|.... ..........+.+..|+
T Consensus 146 -~~~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl------- 217 (255)
T d1gega_ 146 -PELAVYSSSKFAVRGLTQTAARDLAPLGITVNGYCPGIVKTPMWAEIDRQVSEAAGKPLGYGTAEFAKRITL------- 217 (255)
T ss_dssp -TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBSSHHHHHHHHHHHHHHTCCTTHHHHHHHTTCTT-------
T ss_pred -cccccchhCHHHHHhhHHHHHHHhhhhCcEEEEEecCcccChHHhhhhhhhHhhhcccchhHHHHHHhcCCC-------
Confidence 335679999999999999998764 8999999999986541110 00001122223333332
Q ss_pred CCcceEecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCC
Q 012176 332 DREVARDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTS 374 (469)
Q Consensus 332 ~~~~~~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~ 374 (469)
..+...+|+|++++.++..... -..|+++.+.+|-
T Consensus 218 -----~R~~~peevA~~v~fL~S~~a~---~itG~~i~vDGG~ 252 (255)
T d1gega_ 218 -----GRLSEPEDVAACVSYLASPDSD---YMTGQSLLIDGGM 252 (255)
T ss_dssp -----CSCBCHHHHHHHHHHHHSGGGT---TCCSCEEEESSSS
T ss_pred -----CCCcCHHHHHHHHHHHhCchhC---CccCcEEEecCCE
Confidence 2256689999999988754322 3456999998874
|
| >d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Thermus thermophilus [TaxId: 274]
Probab=99.84 E-value=3.6e-20 Score=174.82 Aligned_cols=229 Identities=14% Similarity=0.015 Sum_probs=160.9
Q ss_pred CCCCEEEEEcCCC--hhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccC-
Q 012176 116 PNGMTVLVTGAAG--FVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV- 192 (469)
Q Consensus 116 ~~~~~VlVtGatG--~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~- 192 (469)
.++|++|||||+| .||++++++|+++|++|++.+|.+. .................+.+|++|+++++++++.+
T Consensus 6 L~gK~alITGas~~~GIG~aiA~~la~~Ga~V~i~~~~~~----~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~ 81 (256)
T d1ulua_ 6 LSGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAER----LRPEAEKLAEALGGALLFRADVTQDEELDALFAGVK 81 (256)
T ss_dssp CTTCEEEEESCCCSSSHHHHHHHHHHHTTCEEEEEESSGG----GHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCcHH----HHHHHHHhhhccCcccccccccCCHHHHHHHHHHHH
Confidence 6789999999987 8999999999999999999888532 22222222223446788999999999999888753
Q ss_pred ----CccEEEEcccccChh--------hhccChHHHHHHHHHHHHHHHHHHHhcCC-CCeEEEEcCccccCCCCCCCCCC
Q 012176 193 ----PFTHVLHLAAQAGVR--------YAMQNPQSYVASNIAGFVNLLEVCKSVNP-QPSIVWASSSSVYGLNTQVPFSE 259 (469)
Q Consensus 193 ----~~d~Vih~Aa~~~~~--------~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~-~~~~V~~SS~~vyg~~~~~~~~E 259 (469)
++|++|||||..... ...++....+++|+.++..+++++...-. .+++|++||.......
T Consensus 82 ~~~g~iDilVnnag~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~G~Iv~isS~~~~~~~------- 154 (256)
T d1ulua_ 82 EAFGGLDYLVHAIAFAPREAMEGRYIDTRRQDWLLALEVSAYSLVAVARRAEPLLREGGGIVTLTYYASEKVV------- 154 (256)
T ss_dssp HHHSSEEEEEECCCCCCHHHHSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEEECGGGTSBC-------
T ss_pred HhcCCceEEEeccccccccccccchhhhhhhhhhHhhhhhHHHHHHHHHHHHHHhccCCEEEEEeehHhcCCC-------
Confidence 689999999874322 12234456889999999999988654311 2389999997765322
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcce
Q 012176 260 SHRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVA 336 (469)
Q Consensus 260 ~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 336 (469)
.....|+.+|.+.+.+++.++.++ ||+++.|.||.|..+..........+.+.+.+..|+.
T Consensus 155 -----~~~~~Y~asKaal~~ltr~lA~ela~~gIrVN~I~PG~i~t~~~~~~~~~~~~~~~~~~~~pl~----------- 218 (256)
T d1ulua_ 155 -----PKYNVMAIAKAALEASVRYLAYELGPKGVRVNAISAGPVRTVAARSIPGFTKMYDRVAQTAPLR----------- 218 (256)
T ss_dssp -----TTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCC----------CHHHHHHHHHHSTTS-----------
T ss_pred -----CCchHHHHHHHHHHHHHHHHHHHhcccCCEEeeeccceeeeccccchhhhHHHHHHHHhcCCCC-----------
Confidence 345689999999999999998764 8999999999998765443222234444444444431
Q ss_pred EecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCCc
Q 012176 337 RDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTSP 375 (469)
Q Consensus 337 ~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~~ 375 (469)
.+..++|+|++++.++..... -..|+++.+.+|..
T Consensus 219 -R~~~pedvA~~v~fL~S~~s~---~itG~~i~VDGG~~ 253 (256)
T d1ulua_ 219 -RNITQEEVGNLGLFLLSPLAS---GITGEVVYVDAGYH 253 (256)
T ss_dssp -SCCCHHHHHHHHHHHHSGGGT---TCCSCEEEESTTGG
T ss_pred -CCcCHHHHHHHHHHHhCchhC---CccCCeEEECcCEe
Confidence 245689999999988764422 24569999988753
|
| >d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076]
Probab=99.84 E-value=4e-20 Score=174.59 Aligned_cols=227 Identities=13% Similarity=0.057 Sum_probs=162.5
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhc-cCCeEEEEecCCCHHHHHHhhccC--
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQ-KHQVFIVEGDLNDAPLLTKLFDVV-- 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~v~~v~~Dl~d~~~l~~~~~~~-- 192 (469)
.++|+||||||++.||++++++|+++|++|++++|+++ .+.+....... ...+.++.+|++|.++++++++.+
T Consensus 4 L~gK~alITGas~GIG~aia~~la~~G~~V~i~~r~~~----~l~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~ 79 (258)
T d1ae1a_ 4 LKGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEK----ELDECLEIWREKGLNVEGSVCDLLSRTERDKLMQTVAH 79 (258)
T ss_dssp CTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHH----HHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH----HHHHHHHHHHhcCCCceEEEeecCCHHHHHHHHHHHHH
Confidence 57999999999999999999999999999999999653 22222222222 346788999999999988776532
Q ss_pred ----CccEEEEcccccCh----hhhccChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEEcCccccCCCCCCCCCCC
Q 012176 193 ----PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCK----SVNPQPSIVWASSSSVYGLNTQVPFSES 260 (469)
Q Consensus 193 ----~~d~Vih~Aa~~~~----~~~~~~~~~~~~~Nv~~~~~ll~aa~----~~~~~~~~V~~SS~~vyg~~~~~~~~E~ 260 (469)
.+|+||||||.... ....+++..++++|+.++..+.+++. +.+. +++|++||.....+.
T Consensus 80 ~~~g~idilinnag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~~~-g~ii~isS~~~~~~~-------- 150 (258)
T d1ae1a_ 80 VFDGKLNILVNNAGVVIHKEAKDFTEKDYNIIMGTNFEAAYHLSQIAYPLLKASQN-GNVIFLSSIAGFSAL-------- 150 (258)
T ss_dssp HTTSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTS-EEEEEECCGGGTSCC--------
T ss_pred HhCCCcEEEeccccccccCccccCCHHHHhhhhhhccccccccccccccccccccc-ccccccccccccccc--------
Confidence 47999999997443 23445667899999999999988754 3333 499999998765432
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCCCC----ChHHHHHHHHHcCCceEEEeeCCCC
Q 012176 261 HRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPD----MAYFFFTKDILQGKTIDVYKTQDDR 333 (469)
Q Consensus 261 ~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~~~----~~~~~~~~~~~~g~~~~~~~~~~~~ 333 (469)
.....|+.+|.+.+.+++.++.++ ||++.+|.||.|..|..... .......+.+....|+
T Consensus 151 ----~~~~~Y~~sK~al~~lt~~lA~el~~~gIrvN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~pl--------- 217 (258)
T d1ae1a_ 151 ----PSVSLYSASKGAINQMTKSLACEWAKDNIRVNSVAPGVILTPLVETAIKKNPHQKEEIDNFIVKTPM--------- 217 (258)
T ss_dssp ----TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBC-------------CHHHHHHHHHHSTT---------
T ss_pred ----ccchhHHHHHHHHHHHHHHHHHhcCcCcEEEEEEeeCcccCcchhhhhhhhhhhHHHHHHHHhcCCC---------
Confidence 335689999999999999998774 79999999999987643211 1112344444433333
Q ss_pred cceEecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCC
Q 012176 334 EVARDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTS 374 (469)
Q Consensus 334 ~~~~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~ 374 (469)
..+...+|+|++++.++..... -..|+.+.+.+|-
T Consensus 218 ---gR~~~pediA~~v~fL~S~~s~---~itG~~i~vDGG~ 252 (258)
T d1ae1a_ 218 ---GRAGKPQEVSALIAFLCFPAAS---YITGQIIWADGGF 252 (258)
T ss_dssp ---CSCBCHHHHHHHHHHHHSGGGT---TCCSCEEEESTTG
T ss_pred ---CCCcCHHHHHHHHHHHhChhhC---CCcCcEEEeCCCe
Confidence 1256789999999998854321 2456888888763
|
| >d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase (5l265) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.83 E-value=6.9e-21 Score=180.62 Aligned_cols=227 Identities=12% Similarity=0.086 Sum_probs=156.5
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHh----hccCCeEEEEecCCCHHHHHHhhcc
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKL----LQKHQVFIVEGDLNDAPLLTKLFDV 191 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~----~~~~~v~~v~~Dl~d~~~l~~~~~~ 191 (469)
.++|++|||||++.||+.++++|+++|++|++.+|+.+ .+.+...+. ....++..+.+|++|+++++++++.
T Consensus 3 l~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~r~~~----~l~~~~~~l~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~ 78 (264)
T d1spxa_ 3 FAEKVAIITGSSNGIGRATAVLFAREGAKVTITGRHAE----RLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILST 78 (264)
T ss_dssp TTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHH----HHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHH
T ss_pred CCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHH----HHHHHHHHHHhcCCCcCceEEEEccCCCHHHHHHHHHH
Confidence 68999999999999999999999999999999999654 222222222 2234699999999999999988876
Q ss_pred C-----CccEEEEcccccChh--------hhccChHHHHHHHHHHHHHHHHHHHhc---CCCCeEEEEcCcc-ccCCCCC
Q 012176 192 V-----PFTHVLHLAAQAGVR--------YAMQNPQSYVASNIAGFVNLLEVCKSV---NPQPSIVWASSSS-VYGLNTQ 254 (469)
Q Consensus 192 ~-----~~d~Vih~Aa~~~~~--------~~~~~~~~~~~~Nv~~~~~ll~aa~~~---~~~~~~V~~SS~~-vyg~~~~ 254 (469)
+ ++|++|||||..... ...++++..+++|+.++..+.+++... +. ..+|+++|.. .+.+.
T Consensus 79 ~~~~~g~iDilvnnAG~~~~~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~p~m~~~~-g~iI~~~S~~~~~~~~-- 155 (264)
T d1spxa_ 79 TLGKFGKLDILVNNAGAAIPDSQSKTGTAQSIESYDATLNLNLRSVIALTKKAVPHLSSTK-GEIVNISSIASGLHAT-- 155 (264)
T ss_dssp HHHHHSCCCEEEECCC-------------CCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEECCTTSSSSCC--
T ss_pred HHHHhCCCCEeecccccccCCccccccccCCHHHHHHHHHHhHHHHHHHHhhhCCcccccc-CcceeeeeeccccccC--
Confidence 4 689999999964221 123456788999999999998876432 11 2666666643 33211
Q ss_pred CCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCCCC-------ChHHHHHHHHHcCCce
Q 012176 255 VPFSESHRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPD-------MAYFFFTKDILQGKTI 324 (469)
Q Consensus 255 ~~~~E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~~~-------~~~~~~~~~~~~g~~~ 324 (469)
.....|+.+|.+.+.+++.++.++ ||+++.|.||.|-.+..... .........+.+.-|+
T Consensus 156 ----------~~~~~Y~asKaal~~lt~~lA~el~~~gIrVN~V~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~Pl 225 (264)
T d1spxa_ 156 ----------PDFPYYSIAKAAIDQYTRNTAIDLIQHGIRVNSISPGLVATGFGSAMGMPEETSKKFYSTMATMKECVPA 225 (264)
T ss_dssp ----------TTSHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCCCC--------------HHHHHHHHHHCTT
T ss_pred ----------CCchhhhhhhhhHHHHHHHHHHHhcccCeEEEEEeeCCCCCcchhccCCcHHHHHHHHHHHHHHHhcCCC
Confidence 234679999999999999998764 89999999999976633211 0111222223332232
Q ss_pred EEEeeCCCCcceEecccHHHHHHHHHHHhccC-CCCCCCCCceEEEeCCCC
Q 012176 325 DVYKTQDDREVARDFTYIDDVVKGCVGATGSG-GKKRGPAQLRVYNLGNTS 374 (469)
Q Consensus 325 ~~~~~~~~~~~~~~~v~v~Dva~~~~~~~~~~-~~~~~~~~~~iyni~~~~ 374 (469)
..+...+|+|++++.++..+ .. -..|+++.+.+|.
T Consensus 226 ------------~R~g~pedvA~~v~fL~S~~~s~---~itG~~i~vDGG~ 261 (264)
T d1spxa_ 226 ------------GVMGQPQDIAEVIAFLADRKTSS---YIIGHQLVVDGGS 261 (264)
T ss_dssp ------------SSCBCHHHHHHHHHHHHCHHHHT---TCCSCEEEESTTG
T ss_pred ------------CCCcCHHHHHHHHHHHhCCcccC---CccCceEEeCCCh
Confidence 12456899999999887533 11 2456899998875
|
| >d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Oil seed rape (Brassica napus) [TaxId: 3708]
Probab=99.83 E-value=2.6e-20 Score=174.40 Aligned_cols=224 Identities=15% Similarity=0.034 Sum_probs=161.0
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhh-ccCCeEEEEecCCCHHHHHHhhccC-----
Q 012176 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLL-QKHQVFIVEGDLNDAPLLTKLFDVV----- 192 (469)
Q Consensus 119 ~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~v~~v~~Dl~d~~~l~~~~~~~----- 192 (469)
+.||||||++.||++++++|+++|++|++.++.+.. ..+....... ...++..+.+|++|+++++++++.+
T Consensus 2 pV~lITGas~GIG~a~a~~la~~Ga~V~i~~~~~~~---~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g 78 (244)
T d1edoa_ 2 PVVVVTGASRGIGKAIALSLGKAGCKVLVNYARSAK---AAEEVSKQIEAYGGQAITFGGDVSKEADVEAMMKTAIDAWG 78 (244)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHH---HHHHHHHHHHHHTCEEEEEECCTTSHHHHHHHHHHHHHHSS
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHH---HHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHHHHHHcC
Confidence 479999999999999999999999999987654321 1222222221 1347889999999999998888754
Q ss_pred CccEEEEcccccCh----hhhccChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEEcCccccCCCCCCCCCCCCCCC
Q 012176 193 PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCK----SVNPQPSIVWASSSSVYGLNTQVPFSESHRTD 264 (469)
Q Consensus 193 ~~d~Vih~Aa~~~~----~~~~~~~~~~~~~Nv~~~~~ll~aa~----~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~ 264 (469)
++|++|||||.... ....++++..+++|+.++..+.+++. +.+. ++||++||.+.+-+.
T Consensus 79 ~iDiLVnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~-G~IVnisS~~~~~~~------------ 145 (244)
T d1edoa_ 79 TIDVVVNNAGITRDTLLIRMKKSQWDEVIDLNLTGVFLCTQAATKIMMKKRK-GRIINIASVVGLIGN------------ 145 (244)
T ss_dssp CCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-EEEEEECCTHHHHCC------------
T ss_pred CCCccccccccccccchhccchHHHHHHHhhhhhhHHHHHHHHHHHHHHcCC-cEEEEEcChhhcCCC------------
Confidence 68999999997443 23455667899999999999988754 3343 499999997655322
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceEeccc
Q 012176 265 QPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTY 341 (469)
Q Consensus 265 ~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~ 341 (469)
.....|+.+|.+.+.+.+.++.++ ||++++|.||.|-.+.... ....+.+.+....|+. .+..
T Consensus 146 ~~~~~Y~asKaal~~ltk~lA~el~~~gIrvN~I~PG~i~T~~~~~--~~~~~~~~~~~~~pl~------------R~~~ 211 (244)
T d1edoa_ 146 IGQANYAAAKAGVIGFSKTAAREGASRNINVNVVCPGFIASDMTAK--LGEDMEKKILGTIPLG------------RTGQ 211 (244)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBCSHHHHT--TCHHHHHHHHTSCTTC------------SCBC
T ss_pred CCCHHHHHHHHHHHHChHHHHHHHhhhCcEEEEEecceeccHHHHH--hhHHHHHHHHhcCCCC------------CCcC
Confidence 235689999999999999999774 8999999999987652211 1123444455444432 2456
Q ss_pred HHHHHHHHHHHhccCCCCCCCCCceEEEeCCCC
Q 012176 342 IDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTS 374 (469)
Q Consensus 342 v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~ 374 (469)
++|+|++++.+..++.. .-..|+++.+.+|-
T Consensus 212 p~dvA~~v~fLa~S~~a--~~itG~~i~vdGG~ 242 (244)
T d1edoa_ 212 PENVAGLVEFLALSPAA--SYITGQAFTIDGGI 242 (244)
T ss_dssp HHHHHHHHHHHHHCSGG--GGCCSCEEEESTTT
T ss_pred HHHHHHHHHHHHCCchh--cCCcCCeEEeCCCe
Confidence 89999999887533311 12456899888763
|
| >d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein R05D8.7 species: Caenorhabditis elegans [TaxId: 6239]
Probab=99.83 E-value=4.8e-20 Score=175.50 Aligned_cols=232 Identities=15% Similarity=0.097 Sum_probs=159.7
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhc----cCCeEEEEecCCCHHHHHHhhc
Q 012176 115 RPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQ----KHQVFIVEGDLNDAPLLTKLFD 190 (469)
Q Consensus 115 ~~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~----~~~v~~v~~Dl~d~~~l~~~~~ 190 (469)
+.++|++|||||++.||++++++|+++|++|++.+|+.+ .+.+....... ..++..+.+|++|+++++++++
T Consensus 2 rL~gK~alVTGas~GIG~aia~~la~~Ga~V~l~~r~~~----~l~~~~~~l~~~~~~~~~~~~~~~Dvs~~~~v~~~~~ 77 (272)
T d1xkqa_ 2 RFSNKTVIITGSSNGIGRTTAILFAQEGANVTITGRSSE----RLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIIN 77 (272)
T ss_dssp TTTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHH----HHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHH
T ss_pred CCCCCEEEEeCcCcHHHHHHHHHHHHCCCEEEEEECCHH----HHHHHHHHHHhcCCCCCceEEEEccCCCHHHHHHHHH
Confidence 478999999999999999999999999999999999543 23333333322 2368999999999999998887
Q ss_pred cC-----CccEEEEcccccChh--------hhccChHHHHHHHHHHHHHHHHHHHhc---CCCCeEEEEcC-ccccCCCC
Q 012176 191 VV-----PFTHVLHLAAQAGVR--------YAMQNPQSYVASNIAGFVNLLEVCKSV---NPQPSIVWASS-SSVYGLNT 253 (469)
Q Consensus 191 ~~-----~~d~Vih~Aa~~~~~--------~~~~~~~~~~~~Nv~~~~~ll~aa~~~---~~~~~~V~~SS-~~vyg~~~ 253 (469)
.+ ++|++|||||..... ...++++..+++|+.++..+.+++... +. ..+|+++| .+...+.
T Consensus 78 ~~~~~~g~iDilvnnAG~~~~~~~~~~~~d~~~~~~~~~~~vNl~~~~~~~~~~~p~m~~~~-g~iI~~~Ss~a~~~~~- 155 (272)
T d1xkqa_ 78 STLKQFGKIDVLVNNAGAAIPDAFGTTGTDQGIDIYHKTLKLNLQAVIEMTKKVKPHLVASK-GEIVNVSSIVAGPQAQ- 155 (272)
T ss_dssp HHHHHHSCCCEEEECCCCCCCCTTCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEECCGGGSSSCC-
T ss_pred HHHHHhCCceEEEeCCcccCcccccccchhccHHHHHHHHHhhhhHHHHHHHhhcccccccC-CccccccchhccccCC-
Confidence 64 689999999974321 112235678999999999999876432 22 25666655 3433211
Q ss_pred CCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCC----CCCChHHHHHHHHHc-CCceE
Q 012176 254 QVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWG----RPDMAYFFFTKDILQ-GKTID 325 (469)
Q Consensus 254 ~~~~~E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~----~~~~~~~~~~~~~~~-g~~~~ 325 (469)
.....|+.+|.+.+.+++.++.++ ||+++.|.||.|-.+.. .++.....+...... ...++
T Consensus 156 -----------~~~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~~~P 224 (272)
T d1xkqa_ 156 -----------PDFLYYAIAKAALDQYTRSTAIDLAKFGIRVNSVSPGMVETGFTNAMGMPDQASQKFYNFMASHKECIP 224 (272)
T ss_dssp -----------CSSHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCBCSSHHHHTTCCHHHHHHHHHHHHHCTTTCT
T ss_pred -----------CCcchhhhHHHHHHHHHHHHHHHhcccCeEEEEEeeCCCcchhhhccCCchHHHHHHHHHHHHHhcCCC
Confidence 234679999999999999998764 89999999999976521 111111111111111 11111
Q ss_pred EEeeCCCCcceEecccHHHHHHHHHHHhccC-CCCCCCCCceEEEeCCCCcc
Q 012176 326 VYKTQDDREVARDFTYIDDVVKGCVGATGSG-GKKRGPAQLRVYNLGNTSPV 376 (469)
Q Consensus 326 ~~~~~~~~~~~~~~v~v~Dva~~~~~~~~~~-~~~~~~~~~~iyni~~~~~v 376 (469)
..-+...+|+|++++.++..+ .. -..|+++.+.+|..+
T Consensus 225 ----------lgR~g~pediA~~v~fL~S~~as~---~iTG~~i~vDGG~~l 263 (272)
T d1xkqa_ 225 ----------IGAAGKPEHIANIILFLADRNLSF---YILGQSIVADGGTSL 263 (272)
T ss_dssp ----------TSSCBCHHHHHHHHHHHHCHHHHT---TCCSCEEEESTTGGG
T ss_pred ----------CCCCcCHHHHHHHHHHHhCcchhC---CccCeEEEeCcCHHH
Confidence 112566899999999887532 11 134599999887643
|
| >d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3beta/17beta hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=99.83 E-value=5.2e-20 Score=173.25 Aligned_cols=225 Identities=15% Similarity=0.069 Sum_probs=159.8
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccC---
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~--- 192 (469)
.++|+++||||++.||+++++.|+++|++|++.+|+.+ .+++...+. ..+..++.+|++|+++++++++.+
T Consensus 4 L~gK~alITGas~GIG~aia~~la~~Ga~V~~~~~~~~----~~~~~~~~~--~~~~~~~~~Dv~~~~~~~~~~~~~~~~ 77 (253)
T d1hxha_ 4 LQGKVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEA----AGQQLAAEL--GERSMFVRHDVSSEADWTLVMAAVQRR 77 (253)
T ss_dssp TTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECSCHH----HHHHHHHHH--CTTEEEECCCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH----HHHHHHHHh--CCCeEEEEeecCCHHHHHHHHHHHHHH
Confidence 68899999999999999999999999999999998542 222222222 346888999999999998888765
Q ss_pred --CccEEEEcccccCh----hhhccChHHHHHHHHHHHHHHHHHHHhcC--CCCeEEEEcCccccCCCCCCCCCCCCCCC
Q 012176 193 --PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCKSVN--PQPSIVWASSSSVYGLNTQVPFSESHRTD 264 (469)
Q Consensus 193 --~~d~Vih~Aa~~~~----~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~--~~~~~V~~SS~~vyg~~~~~~~~E~~~~~ 264 (469)
++|++|||||.... ....++++..+++|+.++..+++++...- ...+||++||...+.+.
T Consensus 78 ~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~G~Iv~isS~~~~~~~------------ 145 (253)
T d1hxha_ 78 LGTLNVLVNNAGILLPGDMETGRLEDFSRLLKINTESVFIGCQQGIAAMKETGGSIINMASVSSWLPI------------ 145 (253)
T ss_dssp HCSCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTCEEEEEECCGGGTSCC------------
T ss_pred hCCCCeEEecccccCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCCceecccchhhhcCc------------
Confidence 68999999997443 23345667899999999999888764321 12489999997665322
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHh-----CCcEEEEeecceecCCCC---CCChHHHHHHHHHcCCceEEEeeCCCCcce
Q 012176 265 QPASLYAATKKAGEEIAHTYNHIY-----GLALTGLRFFTVYGPWGR---PDMAYFFFTKDILQGKTIDVYKTQDDREVA 336 (469)
Q Consensus 265 ~p~~~Y~~sK~~~E~~~~~~~~~~-----gi~~~ilRp~~v~Gp~~~---~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 336 (469)
.....|+.+|.+.+.+++.++.++ +|+++.|.||.|..+... ++... +........ ....
T Consensus 146 ~~~~~Y~asKaal~~lt~~lA~e~~~~g~~IrVN~I~PG~i~T~~~~~~~~~~~~----~~~~~~~~~--------~~~~ 213 (253)
T d1hxha_ 146 EQYAGYSASKAAVSALTRAAALSCRKQGYAIRVNSIHPDGIYTPMMQASLPKGVS----KEMVLHDPK--------LNRA 213 (253)
T ss_dssp TTBHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEESEECCHHHHHHSCTTCC----HHHHBCBTT--------TBTT
T ss_pred cccccccchhHHHHHHHHHHHHHHhhcCCCEEEEEEeECCCcCHhHHhhCcchhh----HHHHHhCcc--------cccc
Confidence 334679999999999999887653 599999999998764110 00000 011111100 1111
Q ss_pred EecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCC
Q 012176 337 RDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNT 373 (469)
Q Consensus 337 ~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~ 373 (469)
-.+..++|+|++++.++..... -..|+++++.+|
T Consensus 214 gr~~~pedvA~~v~fL~S~~s~---~itG~~i~VDGG 247 (253)
T d1hxha_ 214 GRAYMPERIAQLVLFLASDESS---VMSGSELHADNS 247 (253)
T ss_dssp CCEECHHHHHHHHHHHHSGGGT---TCCSCEEEESSS
T ss_pred CCCCCHHHHHHHHHHHhChhhC---CCcCcEEEECcc
Confidence 2456789999999988754322 345689988776
|
| >d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Drosophila alcohol dehydrogenase species: Fly (Drosophila lebanonensis) [TaxId: 7225]
Probab=99.83 E-value=2.4e-19 Score=168.81 Aligned_cols=220 Identities=15% Similarity=0.095 Sum_probs=157.9
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCC-CHHHHHHhhccC--
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLN-DAPLLTKLFDVV-- 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~-d~~~l~~~~~~~-- 192 (469)
.++|+||||||++.||..++++|+++|++|+++.|..+.. .... .........++.++.+|++ +.++++++++.+
T Consensus 3 l~gK~vlITGgs~GIG~~~A~~la~~G~~vii~~r~~~~~-~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 80 (254)
T d1sbya1 3 LTNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENP-TALA-ELKAINPKVNITFHTYDVTVPVAESKKLLKKIFD 80 (254)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSCCH-HHHH-HHHHHCTTSEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEECCcccH-HHHH-HHHhhCCCCCEEEEEeecCCCHHHHHHHHHHHHH
Confidence 6799999999999999999999999999999998866531 1111 1122233447999999997 666677666543
Q ss_pred ---CccEEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhc------CCCCeEEEEcCccccCCCCCCCCCCCCCC
Q 012176 193 ---PFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSV------NPQPSIVWASSSSVYGLNTQVPFSESHRT 263 (469)
Q Consensus 193 ---~~d~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~------~~~~~~V~~SS~~vyg~~~~~~~~E~~~~ 263 (469)
++|++|||||... +++.+.++++|+.|+..+..++... +...+||++||...+.+.
T Consensus 81 ~~g~iDilvnnAG~~~----~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~~~~g~Ii~isS~~~~~~~----------- 145 (254)
T d1sbya1 81 QLKTVDILINGAGILD----DHQIERTIAINFTGLVNTTTAILDFWDKRKGGPGGIIANICSVTGFNAI----------- 145 (254)
T ss_dssp HHSCCCEEEECCCCCC----TTCHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGGTSCC-----------
T ss_pred HcCCCCEEEeCCCCCC----HHHHHHHHHHHhHHHHHHHHHHHHHhhhcccCCCceEEEEechhhccCC-----------
Confidence 6899999999743 4788899999999999998876432 223479999997765432
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeecceecCC---CCCCChHHHHHHHHHcCCceEEEeeCCCCcceE
Q 012176 264 DQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPW---GRPDMAYFFFTKDILQGKTIDVYKTQDDREVAR 337 (469)
Q Consensus 264 ~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~Gp~---~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 337 (469)
.....|+.+|.+...+.+.++.+ +||+++.|.||.|..+- ..........+.....+++
T Consensus 146 -~~~~~Y~asKaal~~~t~~la~el~~~gIrVn~I~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~-------------- 210 (254)
T d1sbya1 146 -HQVPVYSASKAAVVSFTNSLAKLAPITGVTAYSINPGITRTPLVHTFNSWLDVEPRVAELLLSHP-------------- 210 (254)
T ss_dssp -TTSHHHHHHHHHHHHHHHHHHHHHHHHSEEEEEEEECSEESHHHHSCCCGGGSCTTHHHHHTTSC--------------
T ss_pred -CCCHHHHHHHHHHHHHHHHHHhhccccCeEEEEEEeCCCcCccccccccchhHHHHHHhccccCC--------------
Confidence 34568999999999999999866 48999999999998751 1111001111122222222
Q ss_pred ecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCC
Q 012176 338 DFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTS 374 (469)
Q Consensus 338 ~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~ 374 (469)
....+++|++++.+++.. ..|+++.+.+|.
T Consensus 211 -~~~~e~va~~~~~~~~~~------~tG~vi~vdgG~ 240 (254)
T d1sbya1 211 -TQTSEQCGQNFVKAIEAN------KNGAIWKLDLGT 240 (254)
T ss_dssp -CEEHHHHHHHHHHHHHHC------CTTCEEEEETTE
T ss_pred -CCCHHHHHHHHHHhhhCC------CCCCEEEECCCE
Confidence 235799999999888654 245888887764
|
| >d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein F25D1.5 species: Caenorhabditis elegans [TaxId: 6239]
Probab=99.83 E-value=1.5e-20 Score=179.20 Aligned_cols=229 Identities=13% Similarity=0.105 Sum_probs=160.6
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhh----ccCCeEEEEecCCCHHHHHHhhcc
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLL----QKHQVFIVEGDLNDAPLLTKLFDV 191 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~----~~~~v~~v~~Dl~d~~~l~~~~~~ 191 (469)
.++|+++||||++.||++++++|+++|++|++.+|+.+ .++....... ...++..+.+|++|+++++++++.
T Consensus 2 L~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~----~l~~~~~~i~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~ 77 (274)
T d1xhla_ 2 FSGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNED----RLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINT 77 (274)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHH----HHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHH----HHHHHHHHHHHcCCCCcceEEEEeeCCCHHHHHHHHHH
Confidence 67999999999999999999999999999999999543 2232222222 223689999999999999888875
Q ss_pred C-----CccEEEEcccccChh------hhccChHHHHHHHHHHHHHHHHHHHhc---CCCCeEEEEcCccccCCCCCCCC
Q 012176 192 V-----PFTHVLHLAAQAGVR------YAMQNPQSYVASNIAGFVNLLEVCKSV---NPQPSIVWASSSSVYGLNTQVPF 257 (469)
Q Consensus 192 ~-----~~d~Vih~Aa~~~~~------~~~~~~~~~~~~Nv~~~~~ll~aa~~~---~~~~~~V~~SS~~vyg~~~~~~~ 257 (469)
+ ++|++|||||..... .+.++++..+++|+.++..+.+++... +....++++||.+.+...
T Consensus 78 ~~~~~G~iDilVnnAG~~~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~g~ii~~ss~~~~~~~----- 152 (274)
T d1xhla_ 78 TLAKFGKIDILVNNAGANLADGTANTDQPVELYQKTFKLNFQAVIEMTQKTKEHLIKTKGEIVNVSSIVAGPQAH----- 152 (274)
T ss_dssp HHHHHSCCCEEEECCCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEECCGGGSSSCC-----
T ss_pred HHHHcCCceEEEeecccccccccccccCCHHHHHHHHhhcccccccccccccccccccccccccchhhhhccccC-----
Confidence 4 689999999863221 123456789999999999998876432 223378888876543221
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCC----CCCh---HHHHHHHHHcCCceEEE
Q 012176 258 SESHRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGR----PDMA---YFFFTKDILQGKTIDVY 327 (469)
Q Consensus 258 ~E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~----~~~~---~~~~~~~~~~g~~~~~~ 327 (469)
.....|+.+|.+.+.+++.++.++ ||+++.|.||.|-.|... .... ...++......-|+
T Consensus 153 -------~~~~~Y~asKaal~~ltk~lA~ela~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~~iPl--- 222 (274)
T d1xhla_ 153 -------SGYPYYACAKAALDQYTRCTAIDLIQHGVRVNSVSPGAVATGFMGAMGLPETASDKLYSFIGSRKECIPV--- 222 (274)
T ss_dssp -------TTSHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCSSHHHHTTCCHHHHHHHHHHHHHCTTTCTT---
T ss_pred -------CCCceehhhhhHHHHHHHHHHHHHhHhCCceeeeccCCCcCchhhhhcccchhhHHHHHHHHHHHcCCCC---
Confidence 234679999999999999998764 899999999999766211 1001 11122221122222
Q ss_pred eeCCCCcceEecccHHHHHHHHHHHhccC-CCCCCCCCceEEEeCCCCc
Q 012176 328 KTQDDREVARDFTYIDDVVKGCVGATGSG-GKKRGPAQLRVYNLGNTSP 375 (469)
Q Consensus 328 ~~~~~~~~~~~~v~v~Dva~~~~~~~~~~-~~~~~~~~~~iyni~~~~~ 375 (469)
.-+..++|+|++++.++..+ .. -..|+++.+.+|..
T Consensus 223 ---------gR~g~pediA~~v~fL~S~d~s~---~itG~~i~vDGG~~ 259 (274)
T d1xhla_ 223 ---------GHCGKPEEIANIIVFLADRNLSS---YIIGQSIVADGGST 259 (274)
T ss_dssp ---------SSCBCHHHHHHHHHHHHCHHHHT---TCCSCEEEESTTGG
T ss_pred ---------CCCcCHHHHHHHHHHHcCCcccc---CccCcEEEeCcCHH
Confidence 12456899999999887422 11 24569999988863
|
| >d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Mannitol dehydrogenase species: Mushroom (Agaricus bisporus) [TaxId: 5341]
Probab=99.82 E-value=7.5e-20 Score=173.01 Aligned_cols=235 Identities=14% Similarity=0.081 Sum_probs=166.5
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccC---
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~--- 192 (469)
.++|++|||||++.||+++++.|+++|++|++++|+.+...+..++.... ...++..+.+|++|+++++++++.+
T Consensus 7 l~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~~~~~--~g~~~~~~~~Dv~~~~~v~~~~~~~~~~ 84 (260)
T d1h5qa_ 7 FVNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVEVTEKVGKE--FGVKTKAYQCDVSNTDIVTKTIQQIDAD 84 (260)
T ss_dssp CTTEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCTTHHHHHHHHHHH--HTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHH--hCCceEEEEccCCCHHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999999776433322222211 1347899999999999998888654
Q ss_pred --CccEEEEcccccCh----hhhccChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEEcCccccCCCCCCCCCCCCC
Q 012176 193 --PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCKS----VNPQPSIVWASSSSVYGLNTQVPFSESHR 262 (469)
Q Consensus 193 --~~d~Vih~Aa~~~~----~~~~~~~~~~~~~Nv~~~~~ll~aa~~----~~~~~~~V~~SS~~vyg~~~~~~~~E~~~ 262 (469)
++|++|||||.... ..+.+++++.+++|+.++..+.+++.. .+....++.++|...+........
T Consensus 85 ~g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~~g~i~~~~s~~~~~~~~~~~~----- 159 (260)
T d1h5qa_ 85 LGPISGLIANAGVSVVKPATELTHEDFAFVYDVNVFGVFNTCRAVAKLWLQKQQKGSIVVTSSMSSQIINQSSLN----- 159 (260)
T ss_dssp SCSEEEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSCCEEETT-----
T ss_pred hCCCcEecccccccccCCHHHhccccccccccccccchhhhhhhhcccccccccceEEEEeeccccccccccccc-----
Confidence 68999999987432 233456678999999999888876532 344446777777665432211000
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceEec
Q 012176 263 TDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDF 339 (469)
Q Consensus 263 ~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 339 (469)
.......|+.+|.+.+.+++.++.++ ||++++|.||.|-.+..... ...+.+.+....|+. .+
T Consensus 160 ~~~~~~~Y~asKaal~~lt~~lA~el~~~gIrvN~I~PG~i~T~~~~~~--~~~~~~~~~~~~pl~------------R~ 225 (260)
T d1h5qa_ 160 GSLTQVFYNSSKAACSNLVKGLAAEWASAGIRVNALSPGYVNTDQTAHM--DKKIRDHQASNIPLN------------RF 225 (260)
T ss_dssp EECSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCGGGGGS--CHHHHHHHHHTCTTS------------SC
T ss_pred cCccccchhhhhhhHHHHHHHHHHHhchhCeEEeecCCCcccCcchhcc--CHHHHHHHHhcCCCC------------CC
Confidence 00234679999999999999998764 79999999999976643221 134445555544442 24
Q ss_pred ccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCC
Q 012176 340 TYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTS 374 (469)
Q Consensus 340 v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~ 374 (469)
..++|+|++++.++..... -..|+++.+.+|.
T Consensus 226 g~pedvA~~v~fL~S~~s~---~itG~~i~VDGG~ 257 (260)
T d1h5qa_ 226 AQPEEMTGQAILLLSDHAT---YMTGGEYFIDGGQ 257 (260)
T ss_dssp BCGGGGHHHHHHHHSGGGT---TCCSCEEEECTTG
T ss_pred cCHHHHHHHHHHHhcchhC---CCcCceEEECCCe
Confidence 5579999999888754321 2456999998875
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.82 E-value=8.9e-20 Score=170.53 Aligned_cols=202 Identities=15% Similarity=0.017 Sum_probs=151.0
Q ss_pred CCCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhh-ccCCeEEEEecCCCHHHHHHhhccC
Q 012176 114 RRPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLL-QKHQVFIVEGDLNDAPLLTKLFDVV 192 (469)
Q Consensus 114 ~~~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~v~~v~~Dl~d~~~l~~~~~~~ 192 (469)
++.+||+++||||++.||++++++|+++|++|++++|+.+ .+.+...+.. ...++..+.+|++|+++++++++.+
T Consensus 3 ~~l~Gkv~lITGas~GIG~~ia~~la~~G~~V~l~~r~~~----~l~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~i 78 (244)
T d1yb1a_ 3 KSVTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKH----GLEETAAKCKGLGAKVHTFVVDCSNREDIYSSAKKV 78 (244)
T ss_dssp CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH----HHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHH----HHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHH
Confidence 4478999999999999999999999999999999999654 2222222222 2347899999999999988888643
Q ss_pred -----CccEEEEcccccChh----hhccChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEEcCccccCCCCCCCCCC
Q 012176 193 -----PFTHVLHLAAQAGVR----YAMQNPQSYVASNIAGFVNLLEVCK----SVNPQPSIVWASSSSVYGLNTQVPFSE 259 (469)
Q Consensus 193 -----~~d~Vih~Aa~~~~~----~~~~~~~~~~~~Nv~~~~~ll~aa~----~~~~~~~~V~~SS~~vyg~~~~~~~~E 259 (469)
++|++|||||..... ..++..+.++++|+.|+..+++++. +.+. ++||++||...+.+.
T Consensus 79 ~~~~g~idilinnag~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~~~-G~Iv~isS~~~~~~~------- 150 (244)
T d1yb1a_ 79 KAEIGDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNVLAHFWTTKAFLPAMTKNNH-GHIVTVASAAGHVSV------- 150 (244)
T ss_dssp HHHTCCCSEEEECCCCCCCCCCGGGHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTC-EEEEEECCCC-CCCH-------
T ss_pred HHHcCCCceeEeeccccccccccccchhHHHhhcceeeeccHHHHHHHhhhHHhcCC-ceEEEeecchhcCCC-------
Confidence 589999999975432 3445566899999999999988753 4444 499999998765322
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHH------hCCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCC
Q 012176 260 SHRTDQPASLYAATKKAGEEIAHTYNHI------YGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDR 333 (469)
Q Consensus 260 ~~~~~~p~~~Y~~sK~~~E~~~~~~~~~------~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 333 (469)
.....|+.+|++.+.+.+.++.+ .|++++.|+||.|-.+..+.. .
T Consensus 151 -----~~~~~Y~asKaal~~~~~~La~El~~~~~~gI~V~~i~PG~v~T~~~~~~-~----------------------- 201 (244)
T d1yb1a_ 151 -----PFLLAYCSSKFAAVGFHKTLTDELAALQITGVKTTCLCPNFVNTGFIKNP-S----------------------- 201 (244)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTEEEEEEEETHHHHCSTTCT-H-----------------------
T ss_pred -----CCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCEEEEEEEcCCCCChhhhCc-C-----------------------
Confidence 23467999999999999999876 279999999999866532210 0
Q ss_pred cceEecccHHHHHHHHHHHhccC
Q 012176 334 EVARDFTYIDDVVKGCVGATGSG 356 (469)
Q Consensus 334 ~~~~~~v~v~Dva~~~~~~~~~~ 356 (469)
......+..+|+|+.++..+...
T Consensus 202 ~~~~~~~~pe~va~~i~~~~~~~ 224 (244)
T d1yb1a_ 202 TSLGPTLEPEEVVNRLMHGILTE 224 (244)
T ss_dssp HHHCCCCCHHHHHHHHHHHHHTT
T ss_pred ccccCCCCHHHHHHHHHHHHhcC
Confidence 00112345799999999887665
|
| >d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Bacterial sepiapterin reductase species: Chlorobium tepidum [TaxId: 1097]
Probab=99.82 E-value=2.5e-19 Score=167.22 Aligned_cols=199 Identities=14% Similarity=0.128 Sum_probs=149.0
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCCc-------EEEEeCCCCCCChhHHHHHHHhhc-cCCeEEEEecCCCHHHHHHhhc
Q 012176 119 MTVLVTGAAGFVGSHCSLALKKRGDG-------VLGLDNFNSYYDPSLKRARQKLLQ-KHQVFIVEGDLNDAPLLTKLFD 190 (469)
Q Consensus 119 ~~VlVtGatG~IG~~l~~~L~~~G~~-------V~~~~r~~~~~~~~~~~~~~~~~~-~~~v~~v~~Dl~d~~~l~~~~~ 190 (469)
+.||||||++.||++++++|+++|++ |++.+|+.+ .+.+....... ...+..+.+|++|+++++++++
T Consensus 2 ~VvlITGas~GIG~aia~~la~~G~~~~~~~~~v~~~~r~~~----~l~~~~~~~~~~g~~~~~~~~Dvt~~~~v~~~~~ 77 (240)
T d2bd0a1 2 HILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAA----DLEKISLECRAEGALTDTITADISDMADVRRLTT 77 (240)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHH----HHHHHHHHHHTTTCEEEEEECCTTSHHHHHHHHH
T ss_pred CEEEEccCCCHHHHHHHHHHHHhCccccccCcEEEEEeCCHH----HHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHH
Confidence 46899999999999999999999998 888888543 22333333222 3468889999999999988887
Q ss_pred cC-----CccEEEEcccccChh----hhccChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEEcCccccCCCCCCCC
Q 012176 191 VV-----PFTHVLHLAAQAGVR----YAMQNPQSYVASNIAGFVNLLEVCK----SVNPQPSIVWASSSSVYGLNTQVPF 257 (469)
Q Consensus 191 ~~-----~~d~Vih~Aa~~~~~----~~~~~~~~~~~~Nv~~~~~ll~aa~----~~~~~~~~V~~SS~~vyg~~~~~~~ 257 (469)
.+ ++|++|||||..... ...++++..+++|+.++..+.+++. +.+. +++|++||.+.+.+.
T Consensus 78 ~~~~~~g~iDilvnnAg~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~-G~Ii~isS~~~~~~~----- 151 (240)
T d2bd0a1 78 HIVERYGHIDCLVNNAGVGRFGALSDLTEEDFDYTMNTNLKGTFFLTQALFALMERQHS-GHIFFITSVAATKAF----- 151 (240)
T ss_dssp HHHHHTSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-EEEEEECCGGGTSCC-----
T ss_pred HHHHHcCCcceeecccccccCCccccCCHHHHhhcCCEeehHHHHHHHHHhHHHHhcCC-CceEEEechhhcCCC-----
Confidence 54 689999999974432 3345667899999999999888754 3343 399999998765432
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCc
Q 012176 258 SESHRTDQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDRE 334 (469)
Q Consensus 258 ~E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 334 (469)
.....|+.+|.+.+.+.+.++.+ +||+++.|.||.|-.+..... . ..
T Consensus 152 -------~~~~~Y~asK~al~~lt~~la~el~~~gIrvn~i~PG~v~T~~~~~~------------------~-----~~ 201 (240)
T d2bd0a1 152 -------RHSSIYCMSKFGQRGLVETMRLYARKCNVRITDVQPGAVYTPMWGKV------------------D-----DE 201 (240)
T ss_dssp -------TTCHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCBCSTTTCCC------------------C-----ST
T ss_pred -------CCChHHHHHHHHHHHHHHHHHHHhCcCCeEEEEeeeCcccCchhhhc------------------C-----Hh
Confidence 33568999999999999999876 489999999999977632210 0 11
Q ss_pred ceEecccHHHHHHHHHHHhccCC
Q 012176 335 VARDFTYIDDVVKGCVGATGSGG 357 (469)
Q Consensus 335 ~~~~~v~v~Dva~~~~~~~~~~~ 357 (469)
....+...+|+|++++.++..+.
T Consensus 202 ~~~~~~~PedvA~~v~~l~s~~~ 224 (240)
T d2bd0a1 202 MQALMMMPEDIAAPVVQAYLQPS 224 (240)
T ss_dssp TGGGSBCHHHHHHHHHHHHTSCT
T ss_pred hHhcCCCHHHHHHHHHHHHcCCc
Confidence 11234567999999999887663
|
| >d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Peroxisomal trans 2-enoyl CoA reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.82 E-value=4.9e-20 Score=177.41 Aligned_cols=231 Identities=11% Similarity=0.085 Sum_probs=162.4
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhh--ccCCeEEEEecCCCHHHHHHhhccC-
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLL--QKHQVFIVEGDLNDAPLLTKLFDVV- 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~v~~v~~Dl~d~~~l~~~~~~~- 192 (469)
.++|++|||||++.||++++++|+++|++|++.+|+.+.......+...... ...++..+.+|++|+++++++++.+
T Consensus 10 L~gKvalITGas~GIG~aia~~la~~Ga~Vvi~~r~~~~l~~~~~el~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~ 89 (297)
T d1yxma1 10 LQGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNLVKSTL 89 (297)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhhccccCceEEEEeccCCCHHHHHHHHHHHH
Confidence 6899999999999999999999999999999999954322111111111111 1347899999999999999888754
Q ss_pred ----CccEEEEcccccCh----hhhccChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEEcCccccCCCCCCCCCCC
Q 012176 193 ----PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCKS----VNPQPSIVWASSSSVYGLNTQVPFSES 260 (469)
Q Consensus 193 ----~~d~Vih~Aa~~~~----~~~~~~~~~~~~~Nv~~~~~ll~aa~~----~~~~~~~V~~SS~~vyg~~~~~~~~E~ 260 (469)
++|++|||||.... ....++++..+++|+.++..+.+++.. .+. ..+|++|+....+.
T Consensus 90 ~~~G~iDiLVnnAg~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~~~m~~~~~-g~Ii~~ss~~~~~~--------- 159 (297)
T d1yxma1 90 DTFGKINFLVNNGGGQFLSPAEHISSKGWHAVLETNLTGTFYMCKAVYSSWMKEHG-GSIVNIIVPTKAGF--------- 159 (297)
T ss_dssp HHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHHHC-EEEEEECCCCTTCC---------
T ss_pred HHhCCeEEEEeeccccccCchhhhhhhhhhhhhcccccchhhHHHHHHHhhccccc-cccccccccccccc---------
Confidence 68999999986432 233456678999999999999887643 232 27888876543221
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCCCCC--hHHHHHHHHHcCCceEEEeeCCCCcc
Q 012176 261 HRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDM--AYFFFTKDILQGKTIDVYKTQDDREV 335 (469)
Q Consensus 261 ~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~~~~--~~~~~~~~~~~g~~~~~~~~~~~~~~ 335 (469)
.....|+.+|.+.+.+++.++.++ ||+++.|.||.|..+...... .-..+.+...+..|+
T Consensus 160 ----~~~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~pl----------- 224 (297)
T d1yxma1 160 ----PLAVHSGAARAGVYNLTKSLALEWACSGIRINCVAPGVIYSQTAVENYGSWGQSFFEGSFQKIPA----------- 224 (297)
T ss_dssp ----TTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEECSBCCTGGGTTSGGGGGGGGTTGGGGSTT-----------
T ss_pred ----cccccchhHHHHHHHHHHHHHHHhcccCceEEEeeeCcCcCcchhhhccccCHHHHHHHHhcCCC-----------
Confidence 234679999999999999999774 799999999999876322110 111122222222221
Q ss_pred eEecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCCc
Q 012176 336 ARDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTSP 375 (469)
Q Consensus 336 ~~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~~ 375 (469)
..+...+|+|.+++.++..... -..|+++.+.+|..
T Consensus 225 -gR~g~pedvA~~v~fL~Sd~s~---~iTG~~i~VDGG~s 260 (297)
T d1yxma1 225 -KRIGVPEEVSSVVCFLLSPAAS---FITGQSVDVDGGRS 260 (297)
T ss_dssp -SSCBCTHHHHHHHHHHHSGGGT---TCCSCEEEESTTGG
T ss_pred -CCCcCHHHHHHHHHHHhCchhc---CcCCcEEEeCcChh
Confidence 2255679999999988854322 34569999988753
|
| >d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus, TTHB020 [TaxId: 274]
Probab=99.81 E-value=1.8e-19 Score=168.36 Aligned_cols=224 Identities=17% Similarity=0.147 Sum_probs=162.1
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccC---
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~--- 192 (469)
.++|+++||||++.||..++++|+++|++|++.+|+.+ .+.+.... + ..++..+++|++|+++++++++.+
T Consensus 3 l~gK~alItGas~GIG~aia~~l~~~G~~V~~~~r~~~----~~~~~~~~-~-~~~~~~~~~Dls~~~~i~~~~~~i~~~ 76 (241)
T d2a4ka1 3 LSGKTILVTGAASGIGRAALDLFAREGASLVAVDREER----LLAEAVAA-L-EAEAIAVVADVSDPKAVEAVFAEALEE 76 (241)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHH----HHHHHHHT-C-CSSEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH----HHHHHHHH-c-CCceEEEEecCCCHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999542 22222221 1 347889999999999999888765
Q ss_pred --CccEEEEcccccCh----hhhccChHHHHHHHHHHHHHHHHHHHhcCCCC-eEEEEcCccccCCCCCCCCCCCCCCCC
Q 012176 193 --PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCKSVNPQP-SIVWASSSSVYGLNTQVPFSESHRTDQ 265 (469)
Q Consensus 193 --~~d~Vih~Aa~~~~----~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~-~~V~~SS~~vyg~~~~~~~~E~~~~~~ 265 (469)
++|++|||||.... ....++++..+++|+.++..+.+++.....+. .++.+||.+.... .
T Consensus 77 ~g~iDiLinnAg~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~k~~~~~~~~~~~i~~~ss~a~~~~-------------~ 143 (241)
T d2a4ka1 77 FGRLHGVAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVLEEGGSLVLTGSVAGLGA-------------F 143 (241)
T ss_dssp HSCCCEEEEGGGGTTTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEECCCTTCCH-------------H
T ss_pred hCCccEeccccccccccchhhhhccccccccccccccccccccccccccccccceeeccccccccc-------------c
Confidence 68999999987432 23345556889999999999999876554443 4555554443211 2
Q ss_pred CCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceEecccH
Q 012176 266 PASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYI 342 (469)
Q Consensus 266 p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v 342 (469)
....|+.+|.+.|.+++.++.++ |+++++|.||.|-.+.... ......+...+..|+. .+..+
T Consensus 144 ~~~~Y~~sK~al~~lt~~lA~el~~~gIrvN~I~PG~v~T~~~~~--~~~~~~~~~~~~~p~~------------r~~~p 209 (241)
T d2a4ka1 144 GLAHYAAGKLGVVGLARTLALELARKGVRVNVLLPGLIQTPMTAG--LPPWAWEQEVGASPLG------------RAGRP 209 (241)
T ss_dssp HHHHHHHCSSHHHHHHHHHHHHHTTTTCEEEEEEECSBCCGGGTT--SCHHHHHHHHHTSTTC------------SCBCH
T ss_pred CccccchhhHHHHHHHHHHHHHHhHhCCEEeeeccCcCCCHHHHh--hhHhHHHHHHhCCCCC------------CCcCH
Confidence 24569999999999999999886 6999999999997653321 1133444444444432 24568
Q ss_pred HHHHHHHHHHhccCCCCCCCCCceEEEeCCCCc
Q 012176 343 DDVVKGCVGATGSGGKKRGPAQLRVYNLGNTSP 375 (469)
Q Consensus 343 ~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~~ 375 (469)
+|+|++++.++..... -..|+++.+.+|..
T Consensus 210 ~dva~~v~fL~S~~s~---~itG~~i~vDGG~s 239 (241)
T d2a4ka1 210 EEVAQAALFLLSEESA---YITGQALYVDGGRS 239 (241)
T ss_dssp HHHHHHHHHHHSGGGT---TCCSCEEEESTTTT
T ss_pred HHHHHHHHHHhcchhC---CCcCceEEeCCCcc
Confidence 9999999998854322 24568998888753
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.81 E-value=1.4e-19 Score=170.78 Aligned_cols=215 Identities=15% Similarity=0.074 Sum_probs=152.6
Q ss_pred CCCCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhc---cCCeEEEEecCCCHHHHHHhh
Q 012176 113 PRRPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQ---KHQVFIVEGDLNDAPLLTKLF 189 (469)
Q Consensus 113 ~~~~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~---~~~v~~v~~Dl~d~~~l~~~~ 189 (469)
|.+.++|+||||||++.||.++++.|+++|++|++.+|+.+ .+.+....... ...+..+.+|++|++++++++
T Consensus 5 M~~lk~Kv~lITGas~GIG~aiA~~la~~G~~Vv~~~r~~~----~l~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~v 80 (257)
T d1xg5a_ 5 MERWRDRLALVTGASGGIGAAVARALVQQGLKVVGCARTVG----NIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMF 80 (257)
T ss_dssp CGGGTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHH----HHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHH
T ss_pred CCCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH----HHHHHHHHHHhcCCCceEEEEEccCCCHHHHHHHH
Confidence 34478999999999999999999999999999999999543 23333332222 236889999999999999888
Q ss_pred ccC-----CccEEEEcccccCh----hhhccChHHHHHHHHHHHHHHHHHHH----hcCC-CCeEEEEcCccccCCCCCC
Q 012176 190 DVV-----PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCK----SVNP-QPSIVWASSSSVYGLNTQV 255 (469)
Q Consensus 190 ~~~-----~~d~Vih~Aa~~~~----~~~~~~~~~~~~~Nv~~~~~ll~aa~----~~~~-~~~~V~~SS~~vyg~~~~~ 255 (469)
+.+ ++|++|||||.... ..+.+.++..+++|+.+...+.+++. +.+. .++||++||.+.+...+.
T Consensus 81 ~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~~~~~~~~~g~Ii~isS~~~~~~~p~- 159 (257)
T d1xg5a_ 81 SAIRSQHSGVDICINNAGLARPDTLLSGSTSGWKDMFNVNVLALSICTREAYQSMKERNVDDGHIININSMSGHRVLPL- 159 (257)
T ss_dssp HHHHHHHCCCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCSCEEEEECCGGGTSCCSC-
T ss_pred HHHHHhcCCCCEEEecccccCCCccccccHHHHHhhhhhhhhHHHHHHHHHHHHHHHhccCCCceEEEechHhcCCCCC-
Confidence 765 68999999997433 23355667899999999988877653 3332 359999999776432110
Q ss_pred CCCCCCCCCCCCChHHHHHHHHHHHHHHHHHH-----hCCcEEEEeecceecCCCC--CCChHHHHHHHHHcCCceEEEe
Q 012176 256 PFSESHRTDQPASLYAATKKAGEEIAHTYNHI-----YGLALTGLRFFTVYGPWGR--PDMAYFFFTKDILQGKTIDVYK 328 (469)
Q Consensus 256 ~~~E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~-----~gi~~~ilRp~~v~Gp~~~--~~~~~~~~~~~~~~g~~~~~~~ 328 (469)
.....|+.+|.+.+.+++.++.+ ++|++++|.||.+-.+... .+.....+...+ +
T Consensus 160 ---------~~~~~Y~~sKaal~~ltr~la~el~~~~~~I~vn~i~PG~i~t~~~~~~~~~~~~~~~~~~----~----- 221 (257)
T d1xg5a_ 160 ---------SVTHFYSATKYAVTALTEGLRQELREAQTHIRATCISPGVVETQFAFKLHDKDPEKAAATY----E----- 221 (257)
T ss_dssp ---------GGGHHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESCBCSSHHHHHTTTCHHHHHHHH----C-----
T ss_pred ---------cccHHHHHHHHHHHhCHHHHHHHHHhCCCCEEEEEEeCCCCCChhhhhcChhhHHHHHhcC----C-----
Confidence 23456999999999999988864 4799999999987654110 111111111111 1
Q ss_pred eCCCCcceEecccHHHHHHHHHHHhccCC
Q 012176 329 TQDDREVARDFTYIDDVVKGCVGATGSGG 357 (469)
Q Consensus 329 ~~~~~~~~~~~v~v~Dva~~~~~~~~~~~ 357 (469)
...+...+|+|++++.++..+.
T Consensus 222 -------~~r~~~pedvA~~v~fL~s~~a 243 (257)
T d1xg5a_ 222 -------QMKCLKPEDVAEAVIYVLSTPA 243 (257)
T ss_dssp ----------CBCHHHHHHHHHHHHHSCT
T ss_pred -------CCCCcCHHHHHHHHHHHhCChh
Confidence 1235678999999999887653
|
| >d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,6,8-tetrahydroxynaphthalene reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=99.81 E-value=4.5e-19 Score=167.47 Aligned_cols=229 Identities=17% Similarity=0.126 Sum_probs=162.8
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhc-cCCeEEEEecCCCHHHHHHhhccC--
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQ-KHQVFIVEGDLNDAPLLTKLFDVV-- 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~v~~v~~Dl~d~~~l~~~~~~~-- 192 (469)
.+||+||||||++.||.+++++|+++|++|++..+.+. +..++....... ...+..+.+|++|+++++++++..
T Consensus 4 L~GK~alITGas~GIG~aia~~la~~G~~Vvi~~~~~~---~~~~~~~~~~~~~g~~~~~~~~D~~~~~~v~~~~~~~~~ 80 (259)
T d1ja9a_ 4 LAGKVALTTGAGRGIGRGIAIELGRRGASVVVNYGSSS---KAAEEVVAELKKLGAQGVAIQADISKPSEVVALFDKAVS 80 (259)
T ss_dssp TTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCH---HHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEcCCCh---HHHHHHHHHHHHcCCCceEecCCCCCHHHHHHHHHHHHH
Confidence 68999999999999999999999999999998776443 122222222222 347899999999999998888754
Q ss_pred ---CccEEEEcccccChh----hhccChHHHHHHHHHHHHHHHHHHHhcCC-CCeEEEEcCc-cccCCCCCCCCCCCCCC
Q 012176 193 ---PFTHVLHLAAQAGVR----YAMQNPQSYVASNIAGFVNLLEVCKSVNP-QPSIVWASSS-SVYGLNTQVPFSESHRT 263 (469)
Q Consensus 193 ---~~d~Vih~Aa~~~~~----~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~-~~~~V~~SS~-~vyg~~~~~~~~E~~~~ 263 (469)
++|++|||||..... ...+.++..+++|+.+...+++++..+-. .++++.++|. +.+.+.
T Consensus 81 ~~g~idilinnag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~g~~iii~s~~~~~~~~----------- 149 (259)
T d1ja9a_ 81 HFGGLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRRGGRIILTSSIAAVMTGI----------- 149 (259)
T ss_dssp HHSCEEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEEEEEEEEECCGGGTCCSC-----------
T ss_pred HcCCCcEEEeccccccccccccchHHHHHHHHhhccceeeeehhhhhhhhhcCCcccccccccccccCC-----------
Confidence 689999999974332 33455568999999999999988754321 1256666653 433221
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCC-----------CCCCChHHHHHHHHHcCCceEEEee
Q 012176 264 DQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPW-----------GRPDMAYFFFTKDILQGKTIDVYKT 329 (469)
Q Consensus 264 ~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~-----------~~~~~~~~~~~~~~~~g~~~~~~~~ 329 (469)
.....|+.+|.+.+.+++.++.++ ||++++|+||.|-.+. .........+.+.+....|+.
T Consensus 150 -~~~~~Y~asK~al~~l~r~lA~e~~~~gIrvN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~---- 224 (259)
T d1ja9a_ 150 -PNHALYAGSKAAVEGFCRAFAVDCGAKGVTVNCIAPGGVKTDMFDENSWHYAPGGYKGMPQEKIDEGLANMNPLK---- 224 (259)
T ss_dssp -CSCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBSSHHHHHHGGGTSTTCCTTCCHHHHHHHHHHTSTTS----
T ss_pred -CCchhHHHHHHHHHHHHHHHHHHHhhcCeEEeccCcCCccChhhhhhhhhhhhhhcccCCHHHHHHHHHhCCCCC----
Confidence 234679999999999999998764 8999999999986431 111122234455555555442
Q ss_pred CCCCcceEecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCC
Q 012176 330 QDDREVARDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTS 374 (469)
Q Consensus 330 ~~~~~~~~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~ 374 (469)
.+...+|++++++.++..... -..|+++.+.+|.
T Consensus 225 --------R~g~p~eVa~~v~fL~S~~a~---~itG~~i~vDGG~ 258 (259)
T d1ja9a_ 225 --------RIGYPADIGRAVSALCQEESE---WINGQVIKLTGGG 258 (259)
T ss_dssp --------SCBCHHHHHHHHHHHHSGGGT---TCCSCEEEESTTC
T ss_pred --------CCcCHHHHHHHHHHHhCchhc---CCcCceEEeCCCC
Confidence 356689999999998865432 2456899888774
|
| >d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.80 E-value=4.8e-19 Score=170.71 Aligned_cols=217 Identities=16% Similarity=0.048 Sum_probs=152.7
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCC-----hhHHHHHHHhhccCCeEEEEecCCCHHHHHHhh
Q 012176 115 RPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYD-----PSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLF 189 (469)
Q Consensus 115 ~~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~-----~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~ 189 (469)
+.++|++|||||++.||+.++++|+++|++|++.+|..+... ....+....... ......+|+.|.+.+++++
T Consensus 4 ~l~gKvalITGas~GIG~aiA~~la~~Ga~Vvi~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~d~~~~~~~~~~v 81 (302)
T d1gz6a_ 4 RFDGRVVLVTGAGGGLGRAYALAFAERGALVVVNDLGGDFKGVGKGSSAADKVVEEIRR--RGGKAVANYDSVEAGEKLV 81 (302)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBCTTSCBCCSHHHHHHHHHHHH--TTCEEEEECCCGGGHHHHH
T ss_pred CcCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCchhhhhhhhHHHHHHHHHHHhh--cccccccccchHHHHHHHH
Confidence 478999999999999999999999999999999988764321 122222222222 3345667898888777666
Q ss_pred ccC-----CccEEEEcccccChh----hhccChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEEcCccccCCCCCCC
Q 012176 190 DVV-----PFTHVLHLAAQAGVR----YAMQNPQSYVASNIAGFVNLLEVCK----SVNPQPSIVWASSSSVYGLNTQVP 256 (469)
Q Consensus 190 ~~~-----~~d~Vih~Aa~~~~~----~~~~~~~~~~~~Nv~~~~~ll~aa~----~~~~~~~~V~~SS~~vyg~~~~~~ 256 (469)
+.+ ++|++|||||..... ...++++..+++|+.++..+++++. +.+. ++||++||.+.+.+.
T Consensus 82 ~~~~~~~G~iDiLVnNAGi~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~-G~IV~isS~~~~~~~---- 156 (302)
T d1gz6a_ 82 KTALDTFGRIDVVVNNAGILRDRSFSRISDEDWDIIQRVHLRGSFQVTRAAWDHMKKQNY-GRIIMTASASGIYGN---- 156 (302)
T ss_dssp HHHHHHTSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-EEEEEECCHHHHHCC----
T ss_pred HHHHHHcCCCCEEEECCccCCCCChhhCCHHHHhhhhceeehhhHHHHHHhHHHHHhCCC-cEEEEeCChhhcCCC----
Confidence 543 689999999975432 2345567899999999999988753 4443 499999997654322
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCC
Q 012176 257 FSESHRTDQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDR 333 (469)
Q Consensus 257 ~~E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 333 (469)
.....|+.+|.+.+.+.+.++.+ +||+++.|.||.+-.+.... . .
T Consensus 157 --------~~~~~Y~asKaal~~lt~~la~E~~~~gIrVN~I~PG~~~t~~~~~--~----------------------~ 204 (302)
T d1gz6a_ 157 --------FGQANYSAAKLGLLGLANTLVIEGRKNNIHCNTIAPNAGSRMTETV--M----------------------P 204 (302)
T ss_dssp --------TTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEEECCSTTTGGG--S----------------------C
T ss_pred --------CCcHHHHHHHHHHHHHHHHHHHHHhccCCceeeeCCCCCCcchhhc--C----------------------c
Confidence 23578999999999999999876 48999999999864332110 0 0
Q ss_pred cceEecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCC
Q 012176 334 EVARDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTS 374 (469)
Q Consensus 334 ~~~~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~ 374 (469)
+.....+..+|+|.+++.++.... ...|+++.+.+|.
T Consensus 205 ~~~~~~~~PedvA~~v~fL~S~~a----~itG~~i~vdGG~ 241 (302)
T d1gz6a_ 205 EDLVEALKPEYVAPLVLWLCHESC----EENGGLFEVGAGW 241 (302)
T ss_dssp HHHHHHSCGGGTHHHHHHHTSTTC----CCCSCEEEEETTE
T ss_pred HhhHhcCCHHHHHHHHHHHcCCCc----CCCCcEEEeCCCc
Confidence 111123346899999988764322 2456888777653
|
| >d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermotoga maritima [TaxId: 2336]
Probab=99.80 E-value=9.5e-19 Score=162.66 Aligned_cols=216 Identities=13% Similarity=0.019 Sum_probs=154.1
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccC-Cc
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV-PF 194 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~-~~ 194 (469)
.++|+||||||++.||++++++|+++|++|++.+|+++ .++..+.+++.+|+++. ++.+++.. ++
T Consensus 2 LkgK~~lVTGas~GIG~aia~~l~~~Ga~V~~~~r~~~------------~l~~~~~~~~~~Dv~~~--~~~~~~~~g~i 67 (234)
T d1o5ia_ 2 IRDKGVLVLAASRGIGRAVADVLSQEGAEVTICARNEE------------LLKRSGHRYVVCDLRKD--LDLLFEKVKEV 67 (234)
T ss_dssp CTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHH------------HHHHTCSEEEECCTTTC--HHHHHHHSCCC
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHH------------HHHhcCCcEEEcchHHH--HHHHHHHhCCC
Confidence 46899999999999999999999999999999999431 12223567888999763 33444432 46
Q ss_pred cEEEEcccccCh----hhhccChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEEcCccccCCCCCCCCCCCCCCCCC
Q 012176 195 THVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCK----SVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQP 266 (469)
Q Consensus 195 d~Vih~Aa~~~~----~~~~~~~~~~~~~Nv~~~~~ll~aa~----~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p 266 (469)
|++|||||.... +.+.++++..+++|+.++..+.+++. +.+. +++|++||....... ..
T Consensus 68 D~lVnnAG~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~~~-G~ii~i~S~~~~~~~------------~~ 134 (234)
T d1o5ia_ 68 DILVLNAGGPKAGFFDELTNEDFKEAIDSLFLNMIKIVRNYLPAMKEKGW-GRIVAITSFSVISPI------------EN 134 (234)
T ss_dssp SEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-EEEEEECCGGGTSCC------------TT
T ss_pred cEEEecccccCCcchhhhhhHHHHHHhhhhhhhhhhhhhccccccccccc-ccccccccccccccc------------cc
Confidence 999999996432 23345567889999999888888753 3443 389999997765432 34
Q ss_pred CChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceEecccHH
Q 012176 267 ASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYID 343 (469)
Q Consensus 267 ~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~ 343 (469)
...|+.+|.+.+.+++.++.++ ||++++|.||.+-.+...... -....+.+.+.-|+ ..+...+
T Consensus 135 ~~~Y~asKaal~~ltk~lA~ela~~gIrVN~I~PG~v~T~~~~~~~-~~~~~~~~~~~~pl------------~R~~~pe 201 (234)
T d1o5ia_ 135 LYTSNSARMALTGFLKTLSFEVAPYGITVNCVAPGWTETERVKELL-SEEKKKQVESQIPM------------RRMAKPE 201 (234)
T ss_dssp BHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTHHHHS-CHHHHHHHHTTSTT------------SSCBCHH
T ss_pred cccchhHHHHHHHHHHHHHHHhcccCeEEeecccCccchhhhhhhc-CHHHHHHHHhcCCC------------CCCcCHH
Confidence 5679999999999999998764 899999999998776322100 01233344444333 2256689
Q ss_pred HHHHHHHHHhccCCCCCCCCCceEEEeCCCC
Q 012176 344 DVVKGCVGATGSGGKKRGPAQLRVYNLGNTS 374 (469)
Q Consensus 344 Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~ 374 (469)
|+|.+++.++..... -..|+++.+.+|-
T Consensus 202 diA~~v~fL~S~~s~---~itG~~i~vDGG~ 229 (234)
T d1o5ia_ 202 EIASVVAFLCSEKAS---YLTGQTIVVDGGL 229 (234)
T ss_dssp HHHHHHHHHHSGGGT---TCCSCEEEESTTC
T ss_pred HHHHHHHHHhChhhc---CCcCcEEEECccc
Confidence 999999888754322 3456999998764
|
| >d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=99.79 E-value=3.6e-18 Score=162.34 Aligned_cols=231 Identities=12% Similarity=0.054 Sum_probs=162.0
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhh-ccCCeEEEEecCCCHHHHHHhhccC-
Q 012176 115 RPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLL-QKHQVFIVEGDLNDAPLLTKLFDVV- 192 (469)
Q Consensus 115 ~~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~v~~v~~Dl~d~~~l~~~~~~~- 192 (469)
+.++|++|||||++.||++++++|+++|++|++.+|+... ..+....... ....+..+.+|++|++++.++++..
T Consensus 15 sL~gK~~lITGas~GIG~aia~~la~~Ga~Vvi~~~~~~~---~~~~~~~~~~~~g~~~~~~~~D~~~~~~v~~~~~~~~ 91 (272)
T d1g0oa_ 15 SLEGKVALVTGAGRGIGREMAMELGRRGCKVIVNYANSTE---SAEEVVAAIKKNGSDAACVKANVGVVEDIVRMFEEAV 91 (272)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHH---HHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCchH---HHHHHHHHHHhhCCceeeEeCCCCCHHHHHHHHHHHH
Confidence 3789999999999999999999999999999999885431 1222222221 2347899999999999988888754
Q ss_pred ----CccEEEEcccccChh----hhccChHHHHHHHHHHHHHHHHHHHhc-CCCCeEEEEcCccccCCCCCCCCCCCCCC
Q 012176 193 ----PFTHVLHLAAQAGVR----YAMQNPQSYVASNIAGFVNLLEVCKSV-NPQPSIVWASSSSVYGLNTQVPFSESHRT 263 (469)
Q Consensus 193 ----~~d~Vih~Aa~~~~~----~~~~~~~~~~~~Nv~~~~~ll~aa~~~-~~~~~~V~~SS~~vyg~~~~~~~~E~~~~ 263 (469)
++|++|||++..... ...++.+..+++|+.++..+++++... ...+++++++|.......
T Consensus 92 ~~~g~idilV~nag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~g~~i~i~s~~~~~~~----------- 160 (272)
T d1g0oa_ 92 KIFGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMGSITGQAKA----------- 160 (272)
T ss_dssp HHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEECCGGGTCSS-----------
T ss_pred HHhCCCCccccccccchhhhhhhhhhhHHHHHhhhccceeeeecccccccccccccccccccccccccc-----------
Confidence 689999999974432 234455678999999999999987653 223478888875432111
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCC----------CCCChHHHHH-HHHHcCCceEEEee
Q 012176 264 DQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWG----------RPDMAYFFFT-KDILQGKTIDVYKT 329 (469)
Q Consensus 264 ~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~----------~~~~~~~~~~-~~~~~g~~~~~~~~ 329 (469)
......|+.+|.+.+.+++.++.++ ||+++.|+||.|-.+.. .....-.... .......|+
T Consensus 161 ~~~~~~Y~asKaal~~ltk~lA~e~~~~gIrVN~I~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pl----- 235 (272)
T d1g0oa_ 161 VPKHAVYSGSKGAIETFARCMAIDMADKKITVNVVAPGGIKTDMYHAVCREYIPNGENLSNEEVDEYAAVQWSPL----- 235 (272)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBSSHHHHHHGGGGSTTCTTCCHHHHHHHHHHHSCTT-----
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHhchhCeEEEEEccCCcCChHHHHHHHhhhhcccccchHHHHHHHHHccCCC-----
Confidence 1344679999999999999998764 89999999999865410 0000111111 112223332
Q ss_pred CCCCcceEecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCC
Q 012176 330 QDDREVARDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTS 374 (469)
Q Consensus 330 ~~~~~~~~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~ 374 (469)
..+...+|+|.+++.++..... -..|+++.+.+|.
T Consensus 236 -------gR~~~peevA~~v~fL~s~~s~---~itG~~i~vDGG~ 270 (272)
T d1g0oa_ 236 -------RRVGLPIDIARVVCFLASNDGG---WVTGKVIGIDGGA 270 (272)
T ss_dssp -------CSCBCHHHHHHHHHHHHSGGGT---TCCSCEEEESTTC
T ss_pred -------CCCcCHHHHHHHHHHHhCchhc---CccCceEeECCCC
Confidence 1356789999999998865422 2456899998875
|
| >d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dehydrogenase/reductase SDR family member 6, DHRS6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.79 E-value=2.3e-18 Score=161.08 Aligned_cols=225 Identities=15% Similarity=0.106 Sum_probs=165.1
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccC-C
Q 012176 115 RPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV-P 193 (469)
Q Consensus 115 ~~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~-~ 193 (469)
+.++|++|||||++.||+.+++.|+++|++|++.+|+++ ......+..+++....|+.+.+.++..++.. +
T Consensus 3 ~l~gK~alITGas~GIG~aia~~la~~G~~Vi~~~r~~~--------~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 74 (245)
T d2ag5a1 3 RLDGKVIILTAAAQGIGQAAALAFAREGAKVIATDINES--------KLQELEKYPGIQTRVLDVTKKKQIDQFANEVER 74 (245)
T ss_dssp TTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHH--------HHGGGGGSTTEEEEECCTTCHHHHHHHHHHCSC
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHH--------HHHHHHhccCCceeeeecccccccccccccccc
Confidence 478999999999999999999999999999999999432 1223344568999999999998888777654 6
Q ss_pred ccEEEEcccccChh----hhccChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEEcCccccCCCCCCCCCCCCCCCC
Q 012176 194 FTHVLHLAAQAGVR----YAMQNPQSYVASNIAGFVNLLEVCKS----VNPQPSIVWASSSSVYGLNTQVPFSESHRTDQ 265 (469)
Q Consensus 194 ~d~Vih~Aa~~~~~----~~~~~~~~~~~~Nv~~~~~ll~aa~~----~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~ 265 (469)
+|++|||||..... .+.++++..+++|+.++..+.+++.. .+. +++|++||....- ....
T Consensus 75 id~lVn~ag~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~~~-g~Ii~isS~~~~~-----------~~~~ 142 (245)
T d2ag5a1 75 LDVLFNVAGFVHHGTVLDCEEKDWDFSMNLNVRSMYLMIKAFLPKMLAQKS-GNIINMSSVASSV-----------KGVV 142 (245)
T ss_dssp CSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-EEEEEECCSBTTT-----------BCCT
T ss_pred ceeEEecccccCCCChhhCCHHHHHHHHHHhhccchhHHHhhCcccccCCC-ceeeeeechhhcc-----------CCcc
Confidence 79999999975442 23445668999999999999887543 333 4899999854310 0113
Q ss_pred CCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCCC----CChHHHHHHHHHcCCceEEEeeCCCCcceEe
Q 012176 266 PASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRP----DMAYFFFTKDILQGKTIDVYKTQDDREVARD 338 (469)
Q Consensus 266 p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~~----~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 338 (469)
....|+.+|.+.+.+++.++.++ ||++++|.||.|-.|.... ......+.+.+....|+. .
T Consensus 143 ~~~~Y~~sKaal~~l~r~lA~e~~~~gIrvN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~pl~------------R 210 (245)
T d2ag5a1 143 NRCVYSTTKAAVIGLTKSVAADFIQQGIRCNCVCPGTVDTPSLQERIQARGNPEEARNDFLKRQKTG------------R 210 (245)
T ss_dssp TBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCEECHHHHHHHHHSSSHHHHHHHHHHTCTTS------------S
T ss_pred chhHHHHHHHHHHHHHHHHHHHhhhhCcEEEEEeeceeechhhHhhhhhhhhhHHHHHHHHhcCCCC------------C
Confidence 45789999999999999999774 7999999999998763210 011123444444444432 2
Q ss_pred cccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCC
Q 012176 339 FTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTS 374 (469)
Q Consensus 339 ~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~ 374 (469)
+...+|+|+++..++..... -..|+++.+.+|.
T Consensus 211 ~~~pedva~~v~fL~s~~s~---~iTG~~i~VDGG~ 243 (245)
T d2ag5a1 211 FATAEEIAMLCVYLASDESA---YVTGNPVIIDGGW 243 (245)
T ss_dssp CEEHHHHHHHHHHHHSGGGT---TCCSCEEEECTTG
T ss_pred CcCHHHHHHHHHHHhChhhC---CCcCceEEeCCCc
Confidence 45689999999998865422 3456999998874
|
| >d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase species: Pseudomonas sp., lb400 [TaxId: 306]
Probab=99.79 E-value=1.4e-18 Score=165.52 Aligned_cols=224 Identities=15% Similarity=0.134 Sum_probs=158.1
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccC---
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~--- 192 (469)
.++|+||||||++.||++++++|+++|++|++++|+.+ .+.+..... ...+..+.+|++|+++++++++.+
T Consensus 3 L~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~----~l~~~~~~~--~~~~~~~~~Dv~~~~~~~~~~~~~~~~ 76 (276)
T d1bdba_ 3 LKGEAVLITGGASGLGRALVDRFVAEGAKVAVLDKSAE----RLAELETDH--GDNVLGIVGDVRSLEDQKQAASRCVAR 76 (276)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH----HHHHHHHHH--GGGEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH----HHHHHHHHc--CCCeeEEecccccHHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999999543 222222222 247899999999999988887653
Q ss_pred --CccEEEEcccccChhh---------hccChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEEcCccccCCCCCCCC
Q 012176 193 --PFTHVLHLAAQAGVRY---------AMQNPQSYVASNIAGFVNLLEVCK----SVNPQPSIVWASSSSVYGLNTQVPF 257 (469)
Q Consensus 193 --~~d~Vih~Aa~~~~~~---------~~~~~~~~~~~Nv~~~~~ll~aa~----~~~~~~~~V~~SS~~vyg~~~~~~~ 257 (469)
++|++|||||...... .+++++..+++|+.++..+++++. +.+ .++|+++|...+-+.
T Consensus 77 ~g~idilvnnAG~~~~~~~~~~~~~e~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~~--g~iI~i~S~~~~~~~----- 149 (276)
T d1bdba_ 77 FGKIDTLIPNAGIWDYSTALVDLPEESLDAAFDEVFHINVKGYIHAVKACLPALVASR--GNVIFTISNAGFYPN----- 149 (276)
T ss_dssp HSCCCEEECCCCCCCTTCCGGGSCTTTHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEECCGGGTSTT-----
T ss_pred hCCcccccccccccCCCCccccccccchhhhhhHHHHHhhHHHHHHHHHHHHHHHhcC--CCceeeeechhccCC-----
Confidence 6899999999643211 112356889999999999888753 333 389999886554322
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHHHHHHHh--CCcEEEEeecceecCCCCCCC--------hHHHHHHHHHcCCceEEE
Q 012176 258 SESHRTDQPASLYAATKKAGEEIAHTYNHIY--GLALTGLRFFTVYGPWGRPDM--------AYFFFTKDILQGKTIDVY 327 (469)
Q Consensus 258 ~E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~--gi~~~ilRp~~v~Gp~~~~~~--------~~~~~~~~~~~g~~~~~~ 327 (469)
.....|+.+|.+.+.+++.++.++ +|+++.|.||.|-.+-..+.. ....+.+.+....|+.
T Consensus 150 -------~~~~~Y~asKaal~~ltr~lA~ela~~IrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~Plg-- 220 (276)
T d1bdba_ 150 -------GGGPLYTAAKHAIVGLVRELAFELAPYVRVNGVGSGGINSDLRGPSSLGMGSKAISTVPLADMLKSVLPIG-- 220 (276)
T ss_dssp -------SSCHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCCCSCCCCCGGGC---------CHHHHHTTTCTTS--
T ss_pred -------CCCchHHHHHHHHHHHHHHHHHHhhcceEEcccCCCCEecCcCCccchhhhhhccCcHHHHHHHHhcCCCC--
Confidence 234679999999999999998775 499999999998765322110 0112333333333332
Q ss_pred eeCCCCcceEecccHHHHHHHHHHHhcc-CCCCCCCCCceEEEeCCCC
Q 012176 328 KTQDDREVARDFTYIDDVVKGCVGATGS-GGKKRGPAQLRVYNLGNTS 374 (469)
Q Consensus 328 ~~~~~~~~~~~~v~v~Dva~~~~~~~~~-~~~~~~~~~~~iyni~~~~ 374 (469)
-+..++|+|.+++.++.. ... -..|+++++.+|-
T Consensus 221 ----------R~g~peeva~~v~fL~S~~~a~---~itG~~i~VDGG~ 255 (276)
T d1bdba_ 221 ----------RMPEVEEYTGAYVFFATRGDAA---PATGALLNYDGGL 255 (276)
T ss_dssp ----------SCCCGGGGSHHHHHHHCHHHHT---TCSSCEEEESSSG
T ss_pred ----------CCcCHHHHHHHHHHHcCCcccC---CeeCcEEEECcCh
Confidence 244579999998877642 111 2456999998863
|
| >d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Erythromycin synthase, eryAI, 1st ketoreductase module species: Saccharopolyspora erythraea [TaxId: 1836]
Probab=99.79 E-value=3e-18 Score=161.69 Aligned_cols=207 Identities=19% Similarity=0.127 Sum_probs=147.0
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCc-EEEEeCCCCCCChhHHHHHHHh-hccCCeEEEEecCCCHHHHHHhhccC--
Q 012176 117 NGMTVLVTGAAGFVGSHCSLALKKRGDG-VLGLDNFNSYYDPSLKRARQKL-LQKHQVFIVEGDLNDAPLLTKLFDVV-- 192 (469)
Q Consensus 117 ~~~~VlVtGatG~IG~~l~~~L~~~G~~-V~~~~r~~~~~~~~~~~~~~~~-~~~~~v~~v~~Dl~d~~~l~~~~~~~-- 192 (469)
...+||||||+|.||..+++.|+++|++ |+++.|+....+.. .+...+. .....+.++.+|++|.++++++++..
T Consensus 8 p~gt~lVTGgs~GIG~a~a~~la~~Ga~~vvl~~R~~~~~~~~-~~~~~~l~~~g~~v~~~~~Dv~d~~~~~~~~~~i~~ 86 (259)
T d2fr1a1 8 PTGTVLVTGGTGGVGGQIARWLARRGAPHLLLVSRSGPDADGA-GELVAELEALGARTTVAACDVTDRESVRELLGGIGD 86 (259)
T ss_dssp CCSEEEEETTTSHHHHHHHHHHHHHTCSEEEEEESSGGGSTTH-HHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHTSCT
T ss_pred CcCEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCccCHHHH-HHHHHHHHhccccccccccccchHHHHHHhhccccc
Confidence 3459999999999999999999999995 78888864333222 2222221 12347899999999999999988765
Q ss_pred --CccEEEEcccccChhh----hccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcCccccCCCCCCCCCCCCCCCCC
Q 012176 193 --PFTHVLHLAAQAGVRY----AMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQP 266 (469)
Q Consensus 193 --~~d~Vih~Aa~~~~~~----~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p 266 (469)
++|.||||+|...... ..++.+..+++|+.++.++.+++...+.. +||++||.+..-+. ..
T Consensus 87 ~~~i~~vv~~ag~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~~-~iv~~SS~a~~~g~------------~~ 153 (259)
T d2fr1a1 87 DVPLSAVFHAAATLDDGTVDTLTGERIERASRAKVLGARNLHELTRELDLT-AFVLFSSFASAFGA------------PG 153 (259)
T ss_dssp TSCEEEEEECCCCCCCCCGGGCCHHHHHHHTHHHHHHHHHHHHHHTTSCCS-EEEEEEEHHHHTCC------------TT
T ss_pred cccccccccccccccccccccccHHHHHHHhhhhccchhHHHHHhhccCCc-eEeeecchhhccCC------------cc
Confidence 5899999999754321 22334567899999999999988877665 99999997655332 33
Q ss_pred CChHHHHHHHHHHHHHHHHHHhCCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceEecccHHHHH
Q 012176 267 ASLYAATKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVV 346 (469)
Q Consensus 267 ~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva 346 (469)
...|+.+|...+.+.+++..+ |++++.|.||.+.+++..... ..+ .++.. + ...+..++++
T Consensus 154 ~~~YaAaka~l~~la~~~~~~-Gi~v~~I~pg~~~~~g~~~~~----~~~-~~~~~----------G---~~~~~~~~~~ 214 (259)
T d2fr1a1 154 LGGYAPGNAYLDGLAQQRRSD-GLPATAVAWGTWAGSGMAEGP----VAD-RFRRH----------G---VIEMPPETAC 214 (259)
T ss_dssp CTTTHHHHHHHHHHHHHHHHT-TCCCEEEEECCBC-----------------CTTT----------T---EECBCHHHHH
T ss_pred cHHHHHHHHhHHHHHHHHHhC-CCCEEECCCCcccCCccccch----HHH-HHHhc----------C---CCCCCHHHHH
Confidence 567999999999999888764 999999999998876432211 111 11110 1 2356789999
Q ss_pred HHHHHHhccC
Q 012176 347 KGCVGATGSG 356 (469)
Q Consensus 347 ~~~~~~~~~~ 356 (469)
+++..++.+.
T Consensus 215 ~~l~~~l~~~ 224 (259)
T d2fr1a1 215 RALQNALDRA 224 (259)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHhCC
Confidence 9999998875
|
| >d1jtva_ c.2.1.2 (A:) Human estrogenic 17beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Human estrogenic 17beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.78 E-value=1.7e-18 Score=165.63 Aligned_cols=173 Identities=17% Similarity=0.121 Sum_probs=129.5
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCC--hhHHHHHHHh-hccCCeEEEEecCCCHHHHHHhhccC--
Q 012176 118 GMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYD--PSLKRARQKL-LQKHQVFIVEGDLNDAPLLTKLFDVV-- 192 (469)
Q Consensus 118 ~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~--~~~~~~~~~~-~~~~~v~~v~~Dl~d~~~l~~~~~~~-- 192 (469)
+|.||||||+++||+++++.|+++|++|+.+.+.....+ ..+.+..... ....++..+.+|++|.++++++++.+
T Consensus 2 kkVvlITGassGIG~a~A~~la~~Ga~v~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~ 81 (285)
T d1jtva_ 2 RTVVLITGCSSGIGLHLAVRLASDPSQSFKVYATLRDLKTQGRLWEAARALACPPGSLETLQLDVRDSKSVAAARERVTE 81 (285)
T ss_dssp CEEEEESCCSSHHHHHHHHHHHTCTTCCEEEEEEESCGGGTHHHHHHHHHTTCCTTSEEEEECCTTCHHHHHHHHHTCTT
T ss_pred CCEEEEccCCCHHHHHHHHHHHHCCCCeEEEEEecCChhhhHHHHHHHHHHhccCCceEEEeccccchHhhhhhhhhccc
Confidence 467899999999999999999999988665543222111 1222222222 23457999999999999999888654
Q ss_pred -CccEEEEcccccChh----hhccChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEEcCccccCCCCCCCCCCCCCC
Q 012176 193 -PFTHVLHLAAQAGVR----YAMQNPQSYVASNIAGFVNLLEVC----KSVNPQPSIVWASSSSVYGLNTQVPFSESHRT 263 (469)
Q Consensus 193 -~~d~Vih~Aa~~~~~----~~~~~~~~~~~~Nv~~~~~ll~aa----~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~ 263 (469)
.+|++|||||..... ...++.+..+++|+.|+.++++++ ++.+. ++||++||.+...+.
T Consensus 82 g~idilvnnag~~~~~~~~~~~~e~~~~~~~vN~~g~~~~~~~~lp~m~~~~~-G~Iv~isS~~g~~~~----------- 149 (285)
T d1jtva_ 82 GRVDVLVCNAGLGLLGPLEALGEDAVASVLDVNVVGTVRMLQAFLPDMKRRGS-GRVLVTGSVGGLMGL----------- 149 (285)
T ss_dssp SCCSEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-EEEEEEEEGGGTSCC-----------
T ss_pred cchhhhhhcccccccccccchhHhhhhhhhhcchhHHHHHHHHHHHHHHHcCC-CceEEEechhhcCCC-----------
Confidence 689999999874432 234556678999999999998875 34454 399999997665322
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecC
Q 012176 264 DQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGP 303 (469)
Q Consensus 264 ~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp 303 (469)
.....|+.+|.+.+.+.+.++.++ |+++++|+||.|-.+
T Consensus 150 -~~~~~Y~asKaal~~l~~~la~El~~~gIrVn~V~PG~v~T~ 191 (285)
T d1jtva_ 150 -PFNDVYCASKFALEGLCESLAVLLLPFGVHLSLIECGPVHTA 191 (285)
T ss_dssp -TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCC-
T ss_pred -CCchHHHHHHHHHHHHHHHHHHHhhccCcEEEEEecCCCCCh
Confidence 335679999999999999998774 899999999998765
|
| >d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sepiapterin reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.78 E-value=3.5e-18 Score=161.30 Aligned_cols=223 Identities=14% Similarity=0.074 Sum_probs=154.3
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHH---CCCcEEEEeCCCCCCChhHHHHHHHhh---ccCCeEEEEecCCCHHHHHHhh
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKK---RGDGVLGLDNFNSYYDPSLKRARQKLL---QKHQVFIVEGDLNDAPLLTKLF 189 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~---~G~~V~~~~r~~~~~~~~~~~~~~~~~---~~~~v~~v~~Dl~d~~~l~~~~ 189 (469)
.++|+++||||++.||..++++|++ +|++|++++|+.+ .+........ ...++..+.+|++|++++++++
T Consensus 4 L~gKvalITGas~GIG~aiA~~lA~~~~~G~~Vv~~~r~~~----~l~~~~~~l~~~~~~~~~~~~~~Dvs~~~~v~~l~ 79 (259)
T d1oaaa_ 4 LGCAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSES----MLRQLKEELGAQQPDLKVVLAAADLGTEAGVQRLL 79 (259)
T ss_dssp CBSEEEEESSCSSHHHHHHHHHHHTTBCTTCEEEEEESCHH----HHHHHHHHHHHHCTTSEEEEEECCTTSHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHhcccCCCEEEEEECCHH----HHHHHHHHHHhhcCCceEEEEEccCCCHHHHHHHH
Confidence 6789999999999999999999986 6999999999554 2222222221 1336889999999999988887
Q ss_pred cc---------CCccEEEEcccccChh----h---hccChHHHHHHHHHHHHHHHHHHHhcCC-----CCeEEEEcCccc
Q 012176 190 DV---------VPFTHVLHLAAQAGVR----Y---AMQNPQSYVASNIAGFVNLLEVCKSVNP-----QPSIVWASSSSV 248 (469)
Q Consensus 190 ~~---------~~~d~Vih~Aa~~~~~----~---~~~~~~~~~~~Nv~~~~~ll~aa~~~~~-----~~~~V~~SS~~v 248 (469)
+. ...|++|||||..+.. . ..++++.++++|+.++..+.+++...-. .++||++||...
T Consensus 80 ~~~~~~~~~~~~~~~~lvnnag~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~m~~~~~~~g~Iv~isS~~~ 159 (259)
T d1oaaa_ 80 SAVRELPRPEGLQRLLLINNAATLGDVSKGFLNVNDLAEVNNYWALNLTSMLCLTSGTLNAFQDSPGLSKTVVNISSLCA 159 (259)
T ss_dssp HHHHHSCCCTTCCEEEEEECCCCCCCCSSCGGGCCCHHHHHHHHHHHTHHHHHHHHHHHHTSCCCTTCEEEEEEECCGGG
T ss_pred HHHHHhhhhccCceEEEEecccccccCCCCccccCCHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcccccccccccc
Confidence 42 2468999999864321 1 2234567899999999999998765321 248999999766
Q ss_pred cCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHH-hCCcEEEEeecceecCCCCCC---ChHHHHHHHHHcCCce
Q 012176 249 YGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHI-YGLALTGLRFFTVYGPWGRPD---MAYFFFTKDILQGKTI 324 (469)
Q Consensus 249 yg~~~~~~~~E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~-~gi~~~ilRp~~v~Gp~~~~~---~~~~~~~~~~~~g~~~ 324 (469)
+.+. .....|+.+|.+.+.+++.++.+ +|++++.|.||.|-.+..... ...+.....+....+.
T Consensus 160 ~~~~------------~~~~~Y~asKaal~~lt~~la~e~~gIrVn~v~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (259)
T d1oaaa_ 160 LQPY------------KGWGLYCAGKAARDMLYQVLAAEEPSVRVLSYAPGPLDNDMQQLARETSKDPELRSKLQKLKSD 227 (259)
T ss_dssp TSCC------------TTCHHHHHHHHHHHHHHHHHHHHCTTEEEEEEECCSBSSHHHHHHHHHCSCHHHHHHHHHHHHT
T ss_pred cCCC------------ccchHHHHHHHHHHHHHHHHHhCCCCCEEEEEEcCCCCCHHHHHhhhcCCCHHHHHHHHhcCCC
Confidence 5322 34578999999999999999866 489999999999977521100 0001111111111111
Q ss_pred EEEeeCCCCcceEecccHHHHHHHHHHHhccCCCCCCCCCceEEEe
Q 012176 325 DVYKTQDDREVARDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNL 370 (469)
Q Consensus 325 ~~~~~~~~~~~~~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni 370 (469)
..+..++|+|++++.++..... ..|+++++
T Consensus 228 ------------~r~~~p~evA~~i~~ll~~~s~----~TG~~idv 257 (259)
T d1oaaa_ 228 ------------GALVDCGTSAQKLLGLLQKDTF----QSGAHVDF 257 (259)
T ss_dssp ------------TCSBCHHHHHHHHHHHHHHCCS----CTTEEEET
T ss_pred ------------CCCCCHHHHHHHHHHHhhhccC----CCCCeEEe
Confidence 1235689999999998876432 23477765
|
| >d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR) species: Human (Homo sapiens), [TaxId: 9606]
Probab=99.78 E-value=5.9e-18 Score=162.67 Aligned_cols=232 Identities=9% Similarity=0.016 Sum_probs=159.3
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccC--
Q 012176 115 RPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV-- 192 (469)
Q Consensus 115 ~~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~-- 192 (469)
+.++|++|||||+|.||++++++|+++|++|++++|+....++...+.... ....+..+.+|++|.+.++++++..
T Consensus 22 ~l~gK~alITGas~GIG~aiA~~la~~Ga~Vii~~r~~~~l~~~~~~l~~~--~g~~~~~~~~D~~~~~~v~~~~~~~~~ 99 (294)
T d1w6ua_ 22 SFQGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISSQ--TGNKVHAIQCDVRDPDMVQNTVSELIK 99 (294)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHH--HSSCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHh--cCCceEEEEecccChHHHHHHhhhhhh
Confidence 578999999999999999999999999999999999654222211111111 2347889999999999988777543
Q ss_pred ---CccEEEEcccccChhh----hccChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEEcCccccCCCCCCCCCCCC
Q 012176 193 ---PFTHVLHLAAQAGVRY----AMQNPQSYVASNIAGFVNLLEVC----KSVNPQPSIVWASSSSVYGLNTQVPFSESH 261 (469)
Q Consensus 193 ---~~d~Vih~Aa~~~~~~----~~~~~~~~~~~Nv~~~~~ll~aa----~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~ 261 (469)
++|++|||||...... ...+....+.+|+.+...+...+ ........++.+||.......
T Consensus 100 ~~g~iDilvnnAg~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~i~~~ss~~~~~~~--------- 170 (294)
T d1w6ua_ 100 VAGHPNIVINNAAGNFISPTERLSPNAWKTITDIVLNGTAFVTLEIGKQLIKAQKGAAFLSITTIYAETGS--------- 170 (294)
T ss_dssp HTCSCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECCTHHHHCC---------
T ss_pred hccccchhhhhhhhccccccccchhhhhhhheeeecccchhhhhhhhcccccccccccccccccchhhhcc---------
Confidence 6899999999744322 12334467788888877776543 223333367777776543322
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCCCC-ChHHHHHHHHHcCCceEEEeeCCCCcceE
Q 012176 262 RTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPD-MAYFFFTKDILQGKTIDVYKTQDDREVAR 337 (469)
Q Consensus 262 ~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 337 (469)
.....|+.+|.+.+.+++.++.++ ||++++|.||.|..+..... .......+...+.-|+.
T Consensus 171 ---~~~~~YsasKaal~~ltk~lA~ela~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~pl~------------ 235 (294)
T d1w6ua_ 171 ---GFVVPSASAKAGVEAMSKSLAAEWGKYGMRFNVIQPGPIKTKGAFSRLDPTGTFEKEMIGRIPCG------------ 235 (294)
T ss_dssp ---TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCC------CCTTSHHHHHHHTTCTTS------------
T ss_pred ---cccchHHHHHHHHHHHHHHHHHHHhHhCeEEEEEccCccccchhhhccCCcHHHHHHHhhcCCCC------------
Confidence 234579999999999999998764 79999999999987643211 01123344455544432
Q ss_pred ecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCCc
Q 012176 338 DFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTSP 375 (469)
Q Consensus 338 ~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~~ 375 (469)
.+...+|+|+++..++..... -..|+++.+.+|..
T Consensus 236 R~~~pediA~~v~fL~sd~s~---~itG~~i~vDGG~~ 270 (294)
T d1w6ua_ 236 RLGTVEELANLAAFLCSDYAS---WINGAVIKFDGGEE 270 (294)
T ss_dssp SCBCHHHHHHHHHHHTSGGGT---TCCSCEEEESTTHH
T ss_pred CCCCHHHHHHHHHHHhCchhc---CCCCcEEEECCChh
Confidence 245689999999998864421 34669999998864
|
| >d1zmta1 c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Halohydrin dehalogenase HheC species: Agrobacterium tumefaciens [TaxId: 358]
Probab=99.77 E-value=1.1e-18 Score=164.07 Aligned_cols=218 Identities=12% Similarity=0.050 Sum_probs=154.7
Q ss_pred EEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccC-----Cc
Q 012176 120 TVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV-----PF 194 (469)
Q Consensus 120 ~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~-----~~ 194 (469)
++|||||++.||+.++++|+++|++|++.+|+.+..+ +.... ......+|++|.++++++++.+ ++
T Consensus 2 TAlVTGas~GiG~aiA~~la~~Ga~V~i~~r~~~~~~----~~~~~-----~~~~~~~dv~~~~~~~~~~~~~~~~~G~i 72 (252)
T d1zmta1 2 TAIVTNVKHFGGMGSALRLSEAGHTVACHDESFKQKD----ELEAF-----AETYPQLKPMSEQEPAELIEAVTSAYGQV 72 (252)
T ss_dssp EEEESSTTSTTHHHHHHHHHHTTCEEEECCGGGGSHH----HHHHH-----HHHCTTSEECCCCSHHHHHHHHHHHHSCC
T ss_pred EEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHH----HHHhh-----hCcEEEeccCCHHHHHHHHHHHHHHcCCC
Confidence 6899999999999999999999999999998654321 11111 1112347888887777776643 68
Q ss_pred cEEEEcccccCh-----hhhccChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEEcCccccCCCCCCCCCCCCCCCC
Q 012176 195 THVLHLAAQAGV-----RYAMQNPQSYVASNIAGFVNLLEVCK----SVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQ 265 (469)
Q Consensus 195 d~Vih~Aa~~~~-----~~~~~~~~~~~~~Nv~~~~~ll~aa~----~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~ 265 (469)
|++|||||.... ..+.++++..+++|+.++..+++++. +.+. ++||++||.+.+.+. .
T Consensus 73 DiLVnNAg~~~~~~~~~~~~~e~~~~~~~vnl~~~~~~~~~~~~~m~~~~~-G~IV~isS~~~~~~~------------~ 139 (252)
T d1zmta1 73 DVLVSNDIFAPEFQPIDKYAVEDYRGAVEALQIRPFALVNAVASQMKKRKS-GHIIFITSATPFGPW------------K 139 (252)
T ss_dssp CEEEEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-CEEEEECCSTTTSCC------------T
T ss_pred CEEEECCcCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhccccc-ceeeccccccccccc------------c
Confidence 999999986322 22345567889999999998888753 3443 499999998765432 2
Q ss_pred CCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCCCCCh------HHHHHHHHHcCCceEEEeeCCCCcce
Q 012176 266 PASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMA------YFFFTKDILQGKTIDVYKTQDDREVA 336 (469)
Q Consensus 266 p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~~~~~------~~~~~~~~~~g~~~~~~~~~~~~~~~ 336 (469)
....|+.+|.+.+.+++.++.++ ||+++.|.||.|-.+....... .+.....+.+..|+.
T Consensus 140 ~~~~Y~asKaal~~lt~~lA~ela~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~e~~~~~~~~~pl~----------- 208 (252)
T d1zmta1 140 ELSTYTSARAGACTLANALSKELGEYNIPVFAIGPNYLHSEDSPYFYPTEPWKTNPEHVAHVKKVTALQ----------- 208 (252)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHGGGTCCEEEEEESSBCCBTCCSSCBHHHHTTCHHHHHHHHHHSSSS-----------
T ss_pred cccccccccccHHHHHHHHHHHhcccCcEEEEEecCCCcCcchhhhhhcccccCCHHHHHHHHhcCCCC-----------
Confidence 34679999999999999998764 7999999999998764322110 123344444433331
Q ss_pred EecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCC
Q 012176 337 RDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTS 374 (469)
Q Consensus 337 ~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~ 374 (469)
-+...+|+|++++.++..... -..|+++.+.+|-
T Consensus 209 -R~g~pedvA~~v~fL~S~~s~---~iTG~~i~vdGG~ 242 (252)
T d1zmta1 209 -RLGTQKELGELVAFLASGSCD---YLTGQVFWLAGGF 242 (252)
T ss_dssp -SCBCHHHHHHHHHHHHTTSCG---GGTTCEEEESTTC
T ss_pred -CCcCHHHHHHHHHHHhCchhc---CCcCCeEEECCCc
Confidence 245689999999988865432 2456999998874
|
| >d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase sniffer species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.76 E-value=9.8e-18 Score=157.12 Aligned_cols=174 Identities=17% Similarity=0.052 Sum_probs=128.8
Q ss_pred CCEEEEEcCCChhHHHHHHHHHH---CCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhcc---
Q 012176 118 GMTVLVTGAAGFVGSHCSLALKK---RGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDV--- 191 (469)
Q Consensus 118 ~~~VlVtGatG~IG~~l~~~L~~---~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~--- 191 (469)
+|+||||||++.||+.++++|++ +|++|++.+|+.+.... +. .......++.++.+|++|+++++++++.
T Consensus 2 MKtilITGas~GIG~a~a~~l~~~a~~g~~V~~~~r~~~~~~~-~~---~~~~~~~~~~~~~~Dvs~~~~v~~~~~~i~~ 77 (248)
T d1snya_ 2 MNSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAKE-LE---DLAKNHSNIHILEIDLRNFDAYDKLVADIEG 77 (248)
T ss_dssp CSEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEESCTTSCHH-HH---HHHHHCTTEEEEECCTTCGGGHHHHHHHHHH
T ss_pred cCEEEEeCCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHH-HH---HHHhcCCcEEEEEEEeccHHHHHHHHhhhHH
Confidence 57899999999999999999974 69999999998765432 22 1122345899999999999998877663
Q ss_pred ----CCccEEEEcccccChh--h---hccChHHHHHHHHHHHHHHHHHHHh----c----------CCCCeEEEEcCccc
Q 012176 192 ----VPFTHVLHLAAQAGVR--Y---AMQNPQSYVASNIAGFVNLLEVCKS----V----------NPQPSIVWASSSSV 248 (469)
Q Consensus 192 ----~~~d~Vih~Aa~~~~~--~---~~~~~~~~~~~Nv~~~~~ll~aa~~----~----------~~~~~~V~~SS~~v 248 (469)
-++|++|||||..... . ..++.+..+++|+.|+..+++++.. . ....++|++||...
T Consensus 78 ~~~~~~iDiLvnNAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~p~l~~~~~~~~~~~~~~~~g~ii~i~S~~g 157 (248)
T d1snya_ 78 VTKDQGLNVLFNNAGIAPKSARITAVRSQELLDTLQTNTVVPIMLAKACLPLLKKAAKANESQPMGVGRAAIINMSSILG 157 (248)
T ss_dssp HHGGGCCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTTTSCSSTTTCEEEEECCGGG
T ss_pred HhhcCCcceEEeeccccccCcccccCCHHHHHHHHHhccccHHHHHHHHHHHHHHhhhcccccccccccccccccccccc
Confidence 2589999999974332 1 2233557899999999988887532 1 11248999999653
Q ss_pred cCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCC
Q 012176 249 YGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPW 304 (469)
Q Consensus 249 yg~~~~~~~~E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~ 304 (469)
.-.. .+......|+.+|.+.+.+++.++.++ |++++.|.||.|-.+.
T Consensus 158 ~~~~---------~~~~~~~~Y~aSKaal~~lt~~la~e~~~~gI~vn~v~PG~v~T~m 207 (248)
T d1snya_ 158 SIQG---------NTDGGMYAYRTSKSALNAATKSLSVDLYPQRIMCVSLHPGWVKTDM 207 (248)
T ss_dssp CSTT---------CCSCCCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEECCCSBCSTT
T ss_pred ccCC---------CCCCChHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCCCcccCCc
Confidence 3111 011234579999999999999988654 7999999999987653
|
| >d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Type II 3-hydroxyacyl-CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.76 E-value=9.6e-18 Score=157.15 Aligned_cols=220 Identities=13% Similarity=0.071 Sum_probs=152.1
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccC--
Q 012176 115 RPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV-- 192 (469)
Q Consensus 115 ~~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~-- 192 (469)
+.+||++|||||++.||..++++|+++|++|++++|+.+.. ....... .........|+.+.+.+++.+...
T Consensus 2 slkGKvalITGas~GIG~aia~~la~~G~~V~~~~r~~~~~----~~~~~~l--~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (248)
T d2o23a1 2 SVKGLVAVITGGASGLGLATAERLVGQGASAVLLDLPNSGG----EAQAKKL--GNNCVFAPADVTSEKDVQTALALAKG 75 (248)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSSH----HHHHHHH--CTTEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHH----HHHHHHh--CCCccccccccccccccccccccccc
Confidence 47899999999999999999999999999999999976532 2222222 237888899999987776655432
Q ss_pred ---CccEEEEcccccCh----------hhhccChHHHHHHHHHHHHHHHHHHHhc---------CCCCeEEEEcCccccC
Q 012176 193 ---PFTHVLHLAAQAGV----------RYAMQNPQSYVASNIAGFVNLLEVCKSV---------NPQPSIVWASSSSVYG 250 (469)
Q Consensus 193 ---~~d~Vih~Aa~~~~----------~~~~~~~~~~~~~Nv~~~~~ll~aa~~~---------~~~~~~V~~SS~~vyg 250 (469)
..|.++++++.... ....+..+..+++|+.++..+.+++... ...++||++||...+.
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~~~~~~~~~G~Ii~isS~~~~~ 155 (248)
T d2o23a1 76 KFGRVDVAVNCAGIAVASKTYNLKKGQTHTLEDFQRVLDVNLMGTFNVIRLVAGEMGQNEPDQGGQRGVIINTASVAAFE 155 (248)
T ss_dssp HHSCCCEEEECCCCCCCCCSEETTTTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSCCCTTSCCEEEEEECCTHHHH
T ss_pred ccccccccccccccccCCCcccccccccchHHHHHHHHhHHHHHHHHHHHHhHHHHHHhhhhccCCceEEEEecchhhcc
Confidence 56888888765221 1122345678999999999999887442 1123799999977653
Q ss_pred CCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEE
Q 012176 251 LNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVY 327 (469)
Q Consensus 251 ~~~~~~~~E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~ 327 (469)
+. .....|+.+|.+.+.+++.++.++ ||+++.|.||.+..+.... ....+...+....|+ .
T Consensus 156 ~~------------~~~~~Y~asKaal~~lt~~la~e~~~~gIrvN~I~PG~i~T~~~~~--~~~~~~~~~~~~~pl--~ 219 (248)
T d2o23a1 156 GQ------------VGQAAYSASKGGIVGMTLPIARDLAPIGIRVMTIAPGLFGTPLLTS--LPEKVCNFLASQVPF--P 219 (248)
T ss_dssp CC------------TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCC------------CHHHHTCSS--S
T ss_pred CC------------CCchHHHHHHHHHHHHHHHHHHHhcccCcceeeeccCceecchhhc--CCHHHHHHHHhcCCC--C
Confidence 22 345789999999999999999774 7999999999997764321 111222223333222 0
Q ss_pred eeCCCCcceEecccHHHHHHHHHHHhccCCCCCCCCCceEEEe
Q 012176 328 KTQDDREVARDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNL 370 (469)
Q Consensus 328 ~~~~~~~~~~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni 370 (469)
..+..++|+|++++.++++. -..|++.+|
T Consensus 220 ---------~R~g~peevA~~v~fL~s~~-----~itGq~I~v 248 (248)
T d2o23a1 220 ---------SRLGDPAEYAHLVQAIIENP-----FLNGEVIRL 248 (248)
T ss_dssp ---------CSCBCHHHHHHHHHHHHHCT-----TCCSCEEEE
T ss_pred ---------CCCcCHHHHHHHHHHHHhCC-----CCCceEeEC
Confidence 12457899999999887643 234476654
|
| >d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Escherichia coli [TaxId: 562]
Probab=99.74 E-value=1e-16 Score=150.86 Aligned_cols=229 Identities=13% Similarity=0.064 Sum_probs=160.4
Q ss_pred CCCCEEEEEcCCC--hhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccC-
Q 012176 116 PNGMTVLVTGAAG--FVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV- 192 (469)
Q Consensus 116 ~~~~~VlVtGatG--~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~- 192 (469)
.++|+||||||+| .||+++++.|+++|++|++.+|++. .................+..|+.+.++..+.++..
T Consensus 3 L~gK~~lITGass~~GIG~aiA~~l~~~G~~V~i~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (258)
T d1qsga_ 3 LSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDK----LKGRVEEFAAQLGSDIVLQCDVAEDASIDTMFAELG 78 (258)
T ss_dssp TTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSTT----THHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCchhHHHHHHHHHHHcCCEEEEEeCCHH----HHHHHHHHHhhcCCcceeecccchHHHHHHHHHHhh
Confidence 5789999999998 8999999999999999999999643 22222222223446778889999988877766543
Q ss_pred ----CccEEEEcccccChhhh---------ccChHHHHHHHHHHHHHHHHHHHhcC-CCCeEEEEcCccccCCCCCCCCC
Q 012176 193 ----PFTHVLHLAAQAGVRYA---------MQNPQSYVASNIAGFVNLLEVCKSVN-PQPSIVWASSSSVYGLNTQVPFS 258 (469)
Q Consensus 193 ----~~d~Vih~Aa~~~~~~~---------~~~~~~~~~~Nv~~~~~ll~aa~~~~-~~~~~V~~SS~~vyg~~~~~~~~ 258 (469)
.+|++||+|+....... .+.......+|+.+...++.++.... ....+|++||.+...+.
T Consensus 79 ~~~~~~d~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ii~iss~~~~~~~------ 152 (258)
T d1qsga_ 79 KVWPKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNPGSALLTLSYLGAERAI------ 152 (258)
T ss_dssp TTCSSEEEEEECCCCCCGGGGSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECGGGTSBC------
T ss_pred hcccccceEEEeecccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCCcEEEEecchhhccCC------
Confidence 67999999987543221 11223466778888888888765432 22368888987643221
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcc
Q 012176 259 ESHRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREV 335 (469)
Q Consensus 259 E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 335 (469)
.....|+.+|.+.+.+++.++.++ ||++++|+||.|..+..............+....|+.
T Consensus 153 ------~~~~~Y~~sKaal~~ltr~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~pl~---------- 216 (258)
T d1qsga_ 153 ------PNYNVMGLAKASLEANVRYMANAMGPEGVRVNAISAGPIRTLAASGIKDFRKMLAHCEAVTPIR---------- 216 (258)
T ss_dssp ------TTTTHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCCCCTTGGGSTTHHHHHHHHHHHSTTS----------
T ss_pred ------CCcHHHHHHHHHHHHHHHHHHHHhCccCceeecccccccccccccccchhhhHHHHHHhCCCCC----------
Confidence 234679999999999999999875 6999999999998775433222233444444333331
Q ss_pred eEecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCCc
Q 012176 336 ARDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTSP 375 (469)
Q Consensus 336 ~~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~~ 375 (469)
.+..++|+|++++.++.+... -..|+++.+.+|..
T Consensus 217 --R~~~peeia~~v~fL~s~~s~---~itG~~i~vDGG~~ 251 (258)
T d1qsga_ 217 --RTVTIEDVGNSAAFLCSDLSA---GISGEVVHVDGGFS 251 (258)
T ss_dssp --SCCCHHHHHHHHHHHTSGGGT---TCCSCEEEESTTGG
T ss_pred --CCcCHHHHHHHHHHHhCchhc---CccCceEEECcCHH
Confidence 245689999999988854422 35669999988753
|
| >d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative carbonyl reductase sniffer species: Caenorhabditis elegans [TaxId: 6239]
Probab=99.74 E-value=3.9e-17 Score=153.18 Aligned_cols=218 Identities=13% Similarity=0.041 Sum_probs=144.8
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCC--cEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccC--
Q 012176 117 NGMTVLVTGAAGFVGSHCSLALKKRGD--GVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV-- 192 (469)
Q Consensus 117 ~~~~VlVtGatG~IG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~-- 192 (469)
++|+||||||++.||.+++++|+++|+ .|++..|+.+.. .+.. .....++.++.+|++|.++++++++..
T Consensus 2 ~~KtilITGassGIG~a~a~~la~~G~~~~Vi~~~R~~~~~----~~l~--~~~~~~~~~~~~Dvs~~~~v~~~~~~i~~ 75 (250)
T d1yo6a1 2 SPGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKA----TELK--SIKDSRVHVLPLTVTCDKSLDTFVSKVGE 75 (250)
T ss_dssp CCSEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESSGGGC----HHHH--TCCCTTEEEEECCTTCHHHHHHHHHHHHH
T ss_pred cCCEEEEeCCCCHHHHHHHHHHHHCCCCCEEEEEeCCHHHH----HHHH--HhhCCceEEEEEecCCHHHHHHHHHHHHH
Confidence 468999999999999999999999996 588888865432 1111 123457999999999999988776532
Q ss_pred -----CccEEEEcccccChh-----hhccChHHHHHHHHHHHHHHHHHHHh----c----------CCCCeEEEEcCccc
Q 012176 193 -----PFTHVLHLAAQAGVR-----YAMQNPQSYVASNIAGFVNLLEVCKS----V----------NPQPSIVWASSSSV 248 (469)
Q Consensus 193 -----~~d~Vih~Aa~~~~~-----~~~~~~~~~~~~Nv~~~~~ll~aa~~----~----------~~~~~~V~~SS~~v 248 (469)
++|++|||||..... ...++.+..+++|+.|+..+.+++.. . ....+++.+|+...
T Consensus 76 ~~~~~~idilinnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~l~~~~~~~~~~~~~~~~~~~i~~s~~~~ 155 (250)
T d1yo6a1 76 IVGSDGLSLLINNAGVLLSYGTNTEPNRAVIAEQLDVNTTSVVLLTQKLLPLLKNAASKESGDQLSVSRAAVITISSGLG 155 (250)
T ss_dssp HHGGGCCCEEEECCCCCCCBCTTSCCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHHHSSCSSCCCTTTCEEEEECCGGG
T ss_pred HhCCCCeEEEEEcCcccCCCCccccCCHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCCCCccccceeccccccccccc
Confidence 479999999974321 12234567899999999999887532 1 11237888887654
Q ss_pred cCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceE
Q 012176 249 YGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTID 325 (469)
Q Consensus 249 yg~~~~~~~~E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~ 325 (469)
+-.... .. ....+...|+.||.+...+++.++.++ |++++.|.||.|-.+-...
T Consensus 156 ~~~~~~---~~--~~~~~~~aY~aSKaal~~l~~~la~el~~~gI~v~~i~PG~v~T~m~~~------------------ 212 (250)
T d1yo6a1 156 SITDNT---SG--SAQFPVLAYRMSKAAINMFGRTLAVDLKDDNVLVVNFCPGWVQTNLGGK------------------ 212 (250)
T ss_dssp CSTTCC---ST--TSSSCBHHHHHHHHHHHHHHHHHHHHTGGGTCEEEEEECCCC-------------------------
T ss_pred cccCCc---cc--ccchhHHHHHHHHHHHHHHHHHHHHHhcccCeEEEEEecCCCCCCCCCC------------------
Confidence 422111 00 011344569999999999999998764 8999999999985531110
Q ss_pred EEeeCCCCcceEecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCCcccH
Q 012176 326 VYKTQDDREVARDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTSPVPV 378 (469)
Q Consensus 326 ~~~~~~~~~~~~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~~vt~ 378 (469)
.....+++.++.++..+..... ...|+.|+ .++.|+.|
T Consensus 213 -----------~~~~~~e~~a~~~~~~~~~~~~---~~sG~f~~-~~g~p~~w 250 (250)
T d1yo6a1 213 -----------NAALTVEQSTAELISSFNKLDN---SHNGRFFM-RNLKPYEF 250 (250)
T ss_dssp -----------------HHHHHHHHHHHTTCCG---GGTTCEEE-TTEEECCC
T ss_pred -----------CCCCCHHHHHHHHHHHHhcCCC---CCCeEEEC-CCCeeCCC
Confidence 0123468888888888876532 23456665 35555543
|
| >d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.73 E-value=3.3e-17 Score=155.86 Aligned_cols=182 Identities=18% Similarity=0.083 Sum_probs=128.6
Q ss_pred CCEE-EEEcCCChhHHHHHHHHHHC-CCcEEEEeCCCCCCChhHHHHHHHhh-ccCCeEEEEecCCCHHHHHHhhccC--
Q 012176 118 GMTV-LVTGAAGFVGSHCSLALKKR-GDGVLGLDNFNSYYDPSLKRARQKLL-QKHQVFIVEGDLNDAPLLTKLFDVV-- 192 (469)
Q Consensus 118 ~~~V-lVtGatG~IG~~l~~~L~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~v~~v~~Dl~d~~~l~~~~~~~-- 192 (469)
||+| |||||++.||..++++|+++ |+.|++.+|+.+. .+....... ....+.++.+|++|.++++++++.+
T Consensus 2 g~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~~----~~~~~~~l~~~~~~~~~~~~Dvs~~~sv~~~~~~~~~ 77 (275)
T d1wmaa1 2 GIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTR----GQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRK 77 (275)
T ss_dssp CCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHH----HHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCHHH----HHHHHHHHHhcCCcEEEEEEecCCHHHHHHHHHHHHH
Confidence 4555 89999999999999999986 8999999996542 222222222 2347899999999999988887654
Q ss_pred ---CccEEEEcccccChhhh----ccChHHHHHHHHHHHHHHHHHHHhcC-CCCeEEEEcCccccCCC-CCCC-------
Q 012176 193 ---PFTHVLHLAAQAGVRYA----MQNPQSYVASNIAGFVNLLEVCKSVN-PQPSIVWASSSSVYGLN-TQVP------- 256 (469)
Q Consensus 193 ---~~d~Vih~Aa~~~~~~~----~~~~~~~~~~Nv~~~~~ll~aa~~~~-~~~~~V~~SS~~vyg~~-~~~~------- 256 (469)
++|++|||||....... .++.+..+++|+.|+..+++++...- ...++|++||....... ...|
T Consensus 78 ~~g~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~g~ivnisS~~~~~~~~~~~~y~~~k~~ 157 (275)
T d1wmaa1 78 EYGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVSSIMSVRALKSCSPELQQKFR 157 (275)
T ss_dssp HHSSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCHHHHHHHHTSCHHHHHHHH
T ss_pred hcCCcEEEEEcCCcCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccceeccccccchhhhhhhc
Confidence 68999999997543322 23445689999999999999875431 12489999996543110 0000
Q ss_pred ---C------------------CCCCCCCCCCChHHHHHHHHHHHHHHHHHHh-------CCcEEEEeecceecC
Q 012176 257 ---F------------------SESHRTDQPASLYAATKKAGEEIAHTYNHIY-------GLALTGLRFFTVYGP 303 (469)
Q Consensus 257 ---~------------------~E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~-------gi~~~ilRp~~v~Gp 303 (469)
. ........+...|+.+|.+...+.+.++.++ |++++.|.||.|-.+
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aY~~sK~a~~~~t~~la~~l~~~~~~~~I~vn~v~PG~v~T~ 232 (275)
T d1wmaa1 158 SETITEEELVGLMNKFVEDTKKGVHQKEGWPSSAYGVTKIGVTVLSRIHARKLSEQRKGDKILLNACCPGWVRTD 232 (275)
T ss_dssp CSSCCHHHHHHHHHHHHHHHHTTCTTTTTCCSCHHHHHHHHHHHHHHHHHHHHHHHCTTSCCEEEEEECCSBCST
T ss_pred ccccchhhhccccccchhcccccccccCCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccCC
Confidence 0 0000111345789999999998887766543 899999999998765
|
| >d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.72 E-value=1.5e-17 Score=154.68 Aligned_cols=204 Identities=15% Similarity=0.097 Sum_probs=142.5
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHH-------hh
Q 012176 117 NGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTK-------LF 189 (469)
Q Consensus 117 ~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~-------~~ 189 (469)
++|+||||||+|.||+++++.|+++|++|.++++..... ......+..|..+.+..+. .+
T Consensus 1 egK~vlITGas~GIG~a~a~~l~~~G~~V~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 67 (236)
T d1dhra_ 1 EARRVLVYGGRGALGSRCVQAFRARNWWVASIDVVENEE-------------ASASVIVKMTDSFTEQADQVTAEVGKLL 67 (236)
T ss_dssp CCCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSCCTT-------------SSEEEECCCCSCHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCcccc-------------ccccceeecccCcHHHHHHHHHHHHHHh
Confidence 479999999999999999999999999999998855421 1133344555555544332 22
Q ss_pred ccCCccEEEEcccccCh-----hhhccChHHHHHHHHHHHHHHHHHHHhc-CCCCeEEEEcCccccCCCCCCCCCCCCCC
Q 012176 190 DVVPFTHVLHLAAQAGV-----RYAMQNPQSYVASNIAGFVNLLEVCKSV-NPQPSIVWASSSSVYGLNTQVPFSESHRT 263 (469)
Q Consensus 190 ~~~~~d~Vih~Aa~~~~-----~~~~~~~~~~~~~Nv~~~~~ll~aa~~~-~~~~~~V~~SS~~vyg~~~~~~~~E~~~~ 263 (469)
...++|++|||||.... ....++.+..+++|+.++..+.+++... ...++||++||.+.+.+.
T Consensus 68 ~~~~iD~lInnAG~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~G~Iv~isS~~~~~~~----------- 136 (236)
T d1dhra_ 68 GDQKVDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSHLATKHLKEGGLLTLAGAKAALDGT----------- 136 (236)
T ss_dssp TTCCEEEEEECCCCCCCBCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGGSCC-----------
T ss_pred CCCCceEEEECCcccccccchhcCCHHHHHHHHHHcchHHHHHHHHHHHhcccccceeEEccHHHcCCc-----------
Confidence 33358999999985322 1223445678999999999998886543 222489999998765432
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHh-----CCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceEe
Q 012176 264 DQPASLYAATKKAGEEIAHTYNHIY-----GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARD 338 (469)
Q Consensus 264 ~~p~~~Y~~sK~~~E~~~~~~~~~~-----gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 338 (469)
.....|+.+|.+.+.+++.++.++ |++++.|.||.|..| +.+...... ..-.
T Consensus 137 -~~~~~Y~asKaal~~lt~~la~El~~~~~gI~vn~v~PG~v~T~----------~~~~~~~~~------------~~~~ 193 (236)
T d1dhra_ 137 -PGMIGYGMAKGAVHQLCQSLAGKNSGMPSGAAAIAVLPVTLDTP----------MNRKSMPEA------------DFSS 193 (236)
T ss_dssp -TTBHHHHHHHHHHHHHHHHHTSTTSSCCTTCEEEEEEESCEECH----------HHHHHSTTS------------CGGG
T ss_pred -cCCcccHHHHHHHHHHHHHHHHHhccCCCcEEEEEEEeccCcCC----------cchhhCccc------------hhhc
Confidence 234689999999999999998653 799999999999875 112211111 1123
Q ss_pred cccHHHHHHHHHHHhccCCCCCCCCCceEEEe
Q 012176 339 FTYIDDVVKGCVGATGSGGKKRGPAQLRVYNL 370 (469)
Q Consensus 339 ~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni 370 (469)
++..+|+++.+..++..... ...|+++.+
T Consensus 194 ~~~pe~va~~~~~l~s~~~~---~i~G~~i~v 222 (236)
T d1dhra_ 194 WTPLEFLVETFHDWITGNKR---PNSGSLIQV 222 (236)
T ss_dssp SEEHHHHHHHHHHHHTTTTC---CCTTCEEEE
T ss_pred CCCHHHHHHHHHHHhCCCcc---CCCCCeEEE
Confidence 56789999999998765432 345566655
|
| >d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Helicobacter pylori [TaxId: 210]
Probab=99.70 E-value=9.6e-16 Score=145.33 Aligned_cols=228 Identities=12% Similarity=0.043 Sum_probs=149.0
Q ss_pred CCCCEEEEEcCCC--hhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccC-
Q 012176 116 PNGMTVLVTGAAG--FVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV- 192 (469)
Q Consensus 116 ~~~~~VlVtGatG--~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~- 192 (469)
.++|++|||||+| .||.+++++|+++|++|++++|++. .++..++. ........++..|+++.++++++++..
T Consensus 3 L~gK~alITGaag~~GIG~AiA~~la~~Ga~V~i~~r~~~-~~~~~~~l---~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 78 (274)
T d2pd4a1 3 LKGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNES-LEKRVRPI---AQELNSPYVYELDVSKEEHFKSLYNSVK 78 (274)
T ss_dssp TTTCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTT-THHHHHHH---HHHTTCCCEEECCTTCHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCcHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHHHHH---HhhCCceeEeeecccchhhHHHHHHHHH
Confidence 5789999999887 7999999999999999999999643 22222221 222446778899999999988777543
Q ss_pred ----CccEEEEcccccChhhhc-----cChHHHHHHH---HHHHHHHHHHHHhc-CCCCeEEEEcCccccCCCCCCCCCC
Q 012176 193 ----PFTHVLHLAAQAGVRYAM-----QNPQSYVASN---IAGFVNLLEVCKSV-NPQPSIVWASSSSVYGLNTQVPFSE 259 (469)
Q Consensus 193 ----~~d~Vih~Aa~~~~~~~~-----~~~~~~~~~N---v~~~~~ll~aa~~~-~~~~~~V~~SS~~vyg~~~~~~~~E 259 (469)
++|++|||+|........ .........+ ......+....... +....++.+|+.+.....
T Consensus 79 ~~~g~id~lV~nag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~~~~~~~~------- 151 (274)
T d2pd4a1 79 KDLGSLDFIVHSVAFAPKEALEGSLLETSKSAFNTAMEISVYSLIELTNTLKPLLNNGASVLTLSYLGSTKYM------- 151 (274)
T ss_dssp HHTSCEEEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECGGGTSBC-------
T ss_pred HHcCCCCeEEeecccccccccccccccccchhhhhhhccccccccccccccccccccCcceeeeccccccccc-------
Confidence 689999999975443221 2222222222 22333333333332 222246666666655432
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcce
Q 012176 260 SHRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVA 336 (469)
Q Consensus 260 ~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 336 (469)
.....|+.+|.+.+.+++.++.++ |+++++|.||.+..+..........+........++
T Consensus 152 -----~~~~~y~asK~al~~ltr~lA~e~~~~GIrvN~I~PG~v~T~~~~~~~~~~~~~~~~~~~~p~------------ 214 (274)
T d2pd4a1 152 -----AHYNVMGLAKAALESAVRYLAVDLGKHHIRVNALSAGPIRTLASSGIADFRMILKWNEINAPL------------ 214 (274)
T ss_dssp -----TTCHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCCCCTTGGGSTTHHHHHHHHHHHSTT------------
T ss_pred -----ccchhhhHHHHHHHHHHHhhHHHhcCcCceecccccCcccCccccccCchHHHHHHHhhhhhc------------
Confidence 345679999999999999988764 799999999999876443222222333333232222
Q ss_pred EecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCC
Q 012176 337 RDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTS 374 (469)
Q Consensus 337 ~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~ 374 (469)
..+..++|+|.+++.++..... -..|+++.+.+|.
T Consensus 215 ~r~~~pedIA~~v~fL~S~~s~---~itG~~i~vDGG~ 249 (274)
T d2pd4a1 215 RKNVSLEEVGNAGMYLLSSLSS---GVSGEVHFVDAGY 249 (274)
T ss_dssp SSCCCHHHHHHHHHHHHSGGGT---TCCSCEEEESTTG
T ss_pred cCCcCHHHHHHHHHHHhChhhC---CCcCceEEECCCh
Confidence 2345689999999998765422 3456999998886
|
| >d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.69 E-value=1.9e-16 Score=146.99 Aligned_cols=204 Identities=14% Similarity=0.116 Sum_probs=139.7
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHH-------hhcc
Q 012176 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTK-------LFDV 191 (469)
Q Consensus 119 ~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~-------~~~~ 191 (469)
.+||||||+|.||++++++|+++|++|++++|...... .....+.+|..+.+.... .++.
T Consensus 3 gkVlITGas~GIG~aia~~l~~~G~~V~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (235)
T d1ooea_ 3 GKVIVYGGKGALGSAILEFFKKNGYTVLNIDLSANDQA-------------DSNILVDGNKNWTEQEQSILEQTASSLQG 69 (235)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCCTTS-------------SEEEECCTTSCHHHHHHHHHHHHHHHHTT
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCchhcc-------------cccceeccccCchhHHHHHHHHHHHHhcC
Confidence 46899999999999999999999999999999654211 133445566665544332 2233
Q ss_pred CCccEEEEcccccChh-----hhccChHHHHHHHHHHHHHHHHHHHhcC-CCCeEEEEcCccccCCCCCCCCCCCCCCCC
Q 012176 192 VPFTHVLHLAAQAGVR-----YAMQNPQSYVASNIAGFVNLLEVCKSVN-PQPSIVWASSSSVYGLNTQVPFSESHRTDQ 265 (469)
Q Consensus 192 ~~~d~Vih~Aa~~~~~-----~~~~~~~~~~~~Nv~~~~~ll~aa~~~~-~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~ 265 (469)
-++|++|||||..... ...+..+.++++|+.++..+.+++...- ...+||++||...+.+. .
T Consensus 70 g~iD~linnAG~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~g~Iv~isS~~~~~~~------------~ 137 (235)
T d1ooea_ 70 SQVDGVFCVAGGWAGGSASSKDFVKNADLMIKQSVWSSAIAAKLATTHLKPGGLLQLTGAAAAMGPT------------P 137 (235)
T ss_dssp CCEEEEEECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGGSCC------------T
T ss_pred CCeeEEEECCcccccccccccCcHHHHhhHhhhHHHHHHHHhhhcccccccceEEEEeccHHhcCCc------------c
Confidence 3689999999963221 1123445679999999999888875431 11389999997665422 3
Q ss_pred CCChHHHHHHHHHHHHHHHHHHh-----CCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceEecc
Q 012176 266 PASLYAATKKAGEEIAHTYNHIY-----GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFT 340 (469)
Q Consensus 266 p~~~Y~~sK~~~E~~~~~~~~~~-----gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v 340 (469)
....|+.+|.+.+.+++.++.++ +++++.|+||.+-.+ +.+...... ....++
T Consensus 138 ~~~~Y~asKaal~~l~~~la~e~~~~~~~i~v~~i~Pg~~~T~----------~~~~~~~~~------------~~~~~~ 195 (235)
T d1ooea_ 138 SMIGYGMAKAAVHHLTSSLAAKDSGLPDNSAVLTIMPVTLDTP----------MNRKWMPNA------------DHSSWT 195 (235)
T ss_dssp TBHHHHHHHHHHHHHHHHHHSTTSSCCTTCEEEEEEESCBCCH----------HHHHHSTTC------------CGGGCB
T ss_pred cccchHHHHHHHHHHHHHHHHHhccCCCceEEEEEecCcCcCc----------chhhhCcCC------------ccccCC
Confidence 35789999999999999998664 678999999997553 223322221 123467
Q ss_pred cHHHHHHHHHHHhccCCCCCCCCCceEEEeC
Q 012176 341 YIDDVVKGCVGATGSGGKKRGPAQLRVYNLG 371 (469)
Q Consensus 341 ~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~ 371 (469)
..+|+++.++..+..+... ...|..+.+.
T Consensus 196 ~~~~va~~~~~~l~~~~~~--~~tG~~i~v~ 224 (235)
T d1ooea_ 196 PLSFISEHLLKWTTETSSR--PSSGALLKIT 224 (235)
T ss_dssp CHHHHHHHHHHHHHCGGGC--CCTTCEEEEE
T ss_pred CHHHHHHHHHHHhcCcccc--CCCceEEEEE
Confidence 8999999988766544211 2345666663
|
| >d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Leishmania major [TaxId: 5664]
Probab=99.68 E-value=9.1e-16 Score=146.12 Aligned_cols=226 Identities=12% Similarity=-0.026 Sum_probs=149.8
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhh--ccCCeEE-----------------EEecC
Q 012176 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLL--QKHQVFI-----------------VEGDL 179 (469)
Q Consensus 119 ~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~v~~-----------------v~~Dl 179 (469)
.+++||||++.||++++++|+++|++|++.+|.+.. .......... ....... ..+|+
T Consensus 3 pVAlITGas~GIG~aiA~~la~~Ga~V~i~~~~~~~---~~~~~~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~dv 79 (284)
T d1e7wa_ 3 PVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAA---EANALSATLNARRPNSAITVQADLSNVATAPVSGADGSAPV 79 (284)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHH---HHHHHHHHHHHHSTTCEEEEECCCSSSCBCCCC----CCCB
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCCHH---HHHHHHHHHHhhcCCceEEEEeecccccccccccccccccC
Confidence 478999999999999999999999999998875431 1111111111 1223333 34568
Q ss_pred CCHHHHHHhhccC-----CccEEEEcccccChhh----hccC--------------hHHHHHHHHHHHHHHHHHHHh---
Q 012176 180 NDAPLLTKLFDVV-----PFTHVLHLAAQAGVRY----AMQN--------------PQSYVASNIAGFVNLLEVCKS--- 233 (469)
Q Consensus 180 ~d~~~l~~~~~~~-----~~d~Vih~Aa~~~~~~----~~~~--------------~~~~~~~Nv~~~~~ll~aa~~--- 233 (469)
++.++++++++.+ ++|++|||||...... ..++ ....+.+|+.+...+.+++..
T Consensus 80 ~~~~~v~~~~~~~~~~~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~ 159 (284)
T d1e7wa_ 80 TLFTRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRNDEDGHEPCVGDREAMETATADLFGSNAIAPYFLIKAFAHRVA 159 (284)
T ss_dssp CHHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCCCC-------------HHHHHHHHHHHHHHTHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhCCCCEEEecCCccCCCchhhCCHHHhhhhhhhHHHHHHHHHHHHhhheeeeeeeeccccchhh
Confidence 8888888887643 6899999999743211 1111 123678899888888876533
Q ss_pred ------cCCCCeEEEEcCccccCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCC
Q 012176 234 ------VNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPW 304 (469)
Q Consensus 234 ------~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~ 304 (469)
.+....+|+++|.....+. .....|+.+|.+.+.+++.++.++ ||+++.|.||.+-...
T Consensus 160 ~~~~~~~~~~~~ii~~~s~~~~~~~------------~~~~~Y~asKaal~~lt~~lA~el~~~gIrvN~I~PG~t~~~~ 227 (284)
T d1e7wa_ 160 GTPAKHRGTNYSIINMVDAMTNQPL------------LGYTIYTMAKGALEGLTRSAALELAPLQIRVNGVGPGLSVLVD 227 (284)
T ss_dssp TSCGGGSCSCEEEEEECCTTTTSCC------------TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBCCGG
T ss_pred hhHHHhcCCCCcccccccccccCCc------------cceeeeccccccchhhhHHHHHHhCCccccccccccccccccc
Confidence 1222368888876654322 345689999999999999998764 8999999999743222
Q ss_pred CCCCChHHHHHHHHHcCCceEEEeeCCCCcceEecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCCccc
Q 012176 305 GRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTSPVP 377 (469)
Q Consensus 305 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~~vt 377 (469)
.. ...+.+......|+ . ..+...+|+|++++.++..... -..|+++.+.+|..++
T Consensus 228 ~~----~~~~~~~~~~~~pl--~---------~R~~~peeiA~~v~fL~S~~s~---~itG~~i~VDGG~sl~ 282 (284)
T d1e7wa_ 228 DM----PPAVWEGHRSKVPL--Y---------QRDSSAAEVSDVVIFLCSSKAK---YITGTCVKVDGGYSLT 282 (284)
T ss_dssp GS----CHHHHHHHHTTCTT--T---------TSCBCHHHHHHHHHHHHSGGGT---TCCSCEEEESTTGGGC
T ss_pred cC----CHHHHHHHHhcCCC--C---------CCCCCHHHHHHHHHHHhCchhc---CccCCeEEECcChhcc
Confidence 21 13455555554432 0 1245689999999988754421 3456999999886554
|
| >d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 11-beta-hydroxysteroid dehydrogenase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.67 E-value=1.5e-16 Score=150.81 Aligned_cols=202 Identities=15% Similarity=0.124 Sum_probs=145.5
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhh--ccCCeEEEEecCCCHHHHHHhhccC-
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLL--QKHQVFIVEGDLNDAPLLTKLFDVV- 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~v~~v~~Dl~d~~~l~~~~~~~- 192 (469)
.+||++|||||+++||++++++|+++|++|++++|+.+ .+++...... ....+..+..|+.+.+....+++..
T Consensus 12 L~GK~alITGassGIG~aiA~~la~~G~~Vil~~r~~~----~l~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 87 (269)
T d1xu9a_ 12 LQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKE----TLQKVVSHCLELGAASAHYIAGTMEDMTFAEQFVAQAG 87 (269)
T ss_dssp GTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHH----HHHHHHHHHHHHTCSEEEEEECCTTCHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHH----HHHHHHHHHhhhhcccchhhhhhhhhHHHHHHHHHHHH
Confidence 68899999999999999999999999999999999553 3333333322 2346788899999988877666543
Q ss_pred ----CccEEEEcccccChh----hhccChHHHHHHHHHHHHHHHHHHHh---cCCCCeEEEEcCccccCCCCCCCCCCCC
Q 012176 193 ----PFTHVLHLAAQAGVR----YAMQNPQSYVASNIAGFVNLLEVCKS---VNPQPSIVWASSSSVYGLNTQVPFSESH 261 (469)
Q Consensus 193 ----~~d~Vih~Aa~~~~~----~~~~~~~~~~~~Nv~~~~~ll~aa~~---~~~~~~~V~~SS~~vyg~~~~~~~~E~~ 261 (469)
.+|++++|||..... ...++.+..+++|+.++..+.+++.. .+. +++|++||.+.+-+.
T Consensus 88 ~~~g~~~~li~nag~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~lp~m~~~~-G~ii~isS~~~~~~~--------- 157 (269)
T d1xu9a_ 88 KLMGGLDMLILNHITNTSLNLFHDDIHHVRKSMEVNFLSYVVLTVAALPMLKQSN-GSIVVVSSLAGKVAY--------- 157 (269)
T ss_dssp HHHTSCSEEEECCCCCCCCCCCCSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEEEGGGTSCC---------
T ss_pred HHhCCccccccccccccccccccCCHHHhhhheeeehhhHHHHHHHHHHHHHhcC-CcceEeccchhcCCC---------
Confidence 569999999874432 22334457899999999888887542 122 389999997765322
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHh-----CCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCcce
Q 012176 262 RTDQPASLYAATKKAGEEIAHTYNHIY-----GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVA 336 (469)
Q Consensus 262 ~~~~p~~~Y~~sK~~~E~~~~~~~~~~-----gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 336 (469)
.....|+.+|.+.+.+.+.++.++ +|+++.|.||.|-.+ +......+. ..
T Consensus 158 ---p~~~~Y~asKaal~~~~~~La~El~~~~~~I~V~~v~PG~v~T~----------~~~~~~~~~------------~~ 212 (269)
T d1xu9a_ 158 ---PMVAAYSASKFALDGFFSSIRKEYSVSRVNVSITLCVLGLIDTE----------TAMKAVSGI------------VH 212 (269)
T ss_dssp ---TTCHHHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEEEECCBCCH----------HHHHHSCGG------------GG
T ss_pred ---CCchHHHHHHHHHHHHHHHHHHHhhhcCCCEEEEEEecCcCCCc----------HHHHhccCC------------cc
Confidence 345789999999999999998663 589999999998653 222222221 11
Q ss_pred EecccHHHHHHHHHHHhccC
Q 012176 337 RDFTYIDDVVKGCVGATGSG 356 (469)
Q Consensus 337 ~~~v~v~Dva~~~~~~~~~~ 356 (469)
......+++|+.++......
T Consensus 213 ~~~~~~e~~a~~i~~~~~~~ 232 (269)
T d1xu9a_ 213 MQAAPKEECALEIIKGGALR 232 (269)
T ss_dssp GGCBCHHHHHHHHHHHHHTT
T ss_pred ccCCCHHHHHHHHHHHhhcC
Confidence 23455789999888876544
|
| >d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Type II 3-hydroxyacyl-CoA dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=99.66 E-value=8.7e-16 Score=142.59 Aligned_cols=212 Identities=17% Similarity=0.123 Sum_probs=148.4
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhcc----CCc
Q 012176 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDV----VPF 194 (469)
Q Consensus 119 ~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~----~~~ 194 (469)
|++|||||++.||++++++|+++|++|++++|+.+ ......+++|+.+......+... ...
T Consensus 2 K~alITGas~GIG~aiA~~la~~Ga~V~i~~~~~~---------------~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 66 (241)
T d1uaya_ 2 RSALVTGGASGLGRAAALALKARGYRVVVLDLRRE---------------GEDLIYVEGDVTREEDVRRAVARAQEEAPL 66 (241)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCC---------------SSSSEEEECCTTCHHHHHHHHHHHHHHSCE
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCcc---------------cccceEeeccccchhhhHHHHHhhhccccc
Confidence 78999999999999999999999999999999654 23567788999988776655543 244
Q ss_pred cEEEEcccccCh--------hhhccChHHHHHHHHHHHHHHHHHHHhc---------CCCCeEEEEcCccccCCCCCCCC
Q 012176 195 THVLHLAAQAGV--------RYAMQNPQSYVASNIAGFVNLLEVCKSV---------NPQPSIVWASSSSVYGLNTQVPF 257 (469)
Q Consensus 195 d~Vih~Aa~~~~--------~~~~~~~~~~~~~Nv~~~~~ll~aa~~~---------~~~~~~V~~SS~~vyg~~~~~~~ 257 (469)
+.++++++.... ....+..+..+++|+.+...++..+... ....+||++||...+.+.
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~G~Ii~isS~~~~~~~----- 141 (241)
T d1uaya_ 67 FAVVSAAGVGLAEKILGKEGPHGLESFRRVLEVNLLGTFNVLRLAAWAMRENPPDAEGQRGVIVNTASVAAFEGQ----- 141 (241)
T ss_dssp EEEEECCCCCCCCCSBCSSSBCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCCCTTSCSEEEEEECCTHHHHCC-----
T ss_pred cchhhhhhccccccccccccchhHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhcccCceeeeeecchhhccCC-----
Confidence 566666654211 1112344568899999988888765332 112389999997665322
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEeeCCCCc
Q 012176 258 SESHRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDRE 334 (469)
Q Consensus 258 ~E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 334 (469)
.....|+.+|.+.+.+++.++.++ ||+++.|.||.|..+...... ......+....++ .
T Consensus 142 -------~~~~~Y~asKaal~~lt~~lA~ela~~gIrVN~V~PG~i~T~~~~~~~--~~~~~~~~~~~~~--~------- 203 (241)
T d1uaya_ 142 -------IGQAAYAASKGGVVALTLPAARELAGWGIRVVTVAPGLFDTPLLQGLP--EKAKASLAAQVPF--P------- 203 (241)
T ss_dssp -------TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSCSSHHHHTSC--HHHHHHHHTTCCS--S-------
T ss_pred -------CCchhhHHHHHHHHHHHHHHHHHHhhcCCceeeecCCcccccccchhh--hhHHHHHHhcCCC--C-------
Confidence 345789999999999999999764 899999999999765322111 2233333343332 1
Q ss_pred ceEecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCCc
Q 012176 335 VARDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTSP 375 (469)
Q Consensus 335 ~~~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~~ 375 (469)
..+..++|+|++++.++... -..|+++.+.+|-.
T Consensus 204 --~R~g~pedvA~~v~fL~s~~-----~iTG~~i~VDGG~~ 237 (241)
T d1uaya_ 204 --PRLGRPEEYAALVLHILENP-----MLNGEVVRLDGALR 237 (241)
T ss_dssp --CSCCCHHHHHHHHHHHHHCT-----TCCSCEEEESTTCC
T ss_pred --CCCcCHHHHHHHHHHHHhCC-----CCCCCEEEECCccc
Confidence 12456899999999888642 34569999988753
|
| >d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]
Probab=99.62 E-value=5.1e-15 Score=139.68 Aligned_cols=230 Identities=10% Similarity=-0.013 Sum_probs=149.8
Q ss_pred CCCCEEEEEcCCC--hhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccC-
Q 012176 116 PNGMTVLVTGAAG--FVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV- 192 (469)
Q Consensus 116 ~~~~~VlVtGatG--~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~- 192 (469)
.++|++|||||+| .||.+++++|+++|++|++.+|+.. ...+...+. .......+++|+.++++++++++.+
T Consensus 4 l~gK~~lItGaag~~GIG~aiA~~la~~Ga~Vil~~~~~~----~~~~~~~~~-~~~~~~~~~~dv~~~~~~~~~~~~v~ 78 (268)
T d2h7ma1 4 LDGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDRL----RLIQRITDR-LPAKAPLLELDVQNEEHLASLAGRVT 78 (268)
T ss_dssp TTTCEEEECCCSSTTCHHHHHHHHHHHTTCEEEEEECSCH----HHHHHHHTT-SSSCCCEEECCTTCHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHcCCEEEEEeCChH----HHHHHHHHH-cCCceeeEeeecccccccccccchhh
Confidence 6889999999654 6999999999999999999998543 111111122 2336778899999998766665432
Q ss_pred -------CccEEEEcccccChhh---------hccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcCccccCCCCCCC
Q 012176 193 -------PFTHVLHLAAQAGVRY---------AMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVP 256 (469)
Q Consensus 193 -------~~d~Vih~Aa~~~~~~---------~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS~~vyg~~~~~~ 256 (469)
++|+++||+|...... ........+..|+........++........++.++|.......
T Consensus 79 ~~~~~~~~ld~~i~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~~~~~~~---- 154 (268)
T d2h7ma1 79 EAIGAGNKLDGVVHSIGFMPQTGMGINPFFDAPYADVSKGIHISAYSYASMAKALLPIMNPGGSIVGMDFDPSRAM---- 154 (268)
T ss_dssp HHHCTTCCEEEEEECCCCCCGGGSTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECCCSSCC----
T ss_pred hccccCCCcceeeecccccCccccccccccccchhhhhhhhhhhhhHHHHHHHHHhhhcccccccccccccccccC----
Confidence 4799999999643211 11222345667777777777766554333345555554433221
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCC------CCCC----hHHHHHHHHHcCCc
Q 012176 257 FSESHRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWG------RPDM----AYFFFTKDILQGKT 323 (469)
Q Consensus 257 ~~E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~------~~~~----~~~~~~~~~~~g~~ 323 (469)
.....|+.+|.+.+.+++.++.++ ||+++.|.||.|-.+.. .... ....+.+...+..|
T Consensus 155 --------p~~~~y~~sK~a~~~ltr~lA~e~~~~gIrVN~V~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 226 (268)
T d2h7ma1 155 --------PAYNWMTVAKSALESVNRFVAREAGKYGVRSNLVAAGPIRTLAMSAIVGGALGEEAGAQIQLLEEGWDQRAP 226 (268)
T ss_dssp --------TTTHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCCCCHHHHHHHTTTTCHHHHHHHHHHHHHHHHHCT
T ss_pred --------cccchhhccccchhhccccchhhhhccCCcceEEecCCCCChhhhhhccchhhhhhccchHHHHHHHHhcCC
Confidence 234679999999999999998764 79999999999875411 1110 11223333333333
Q ss_pred eEEEeeCCCCcceEecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCCcc
Q 012176 324 IDVYKTQDDREVARDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTSPV 376 (469)
Q Consensus 324 ~~~~~~~~~~~~~~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~~v 376 (469)
+. +.+..++|+|++++.++..... -..|+++.+.+|...
T Consensus 227 l~-----------rr~~~p~dva~~v~fL~Sd~a~---~iTG~~i~vDGG~~~ 265 (268)
T d2h7ma1 227 IG-----------WNMKDATPVAKTVCALLSDWLP---ATTGDIIYADGGAHT 265 (268)
T ss_dssp TC-----------CCTTCCHHHHHHHHHHHSSSCT---TCCSEEEEESTTGGG
T ss_pred CC-----------CCCCCHHHHHHHHHHHhCchhc---CccCCEEEECcCccc
Confidence 21 2245579999999988854321 345699999888644
|
| >d1mxha_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Trypanosoma cruzi [TaxId: 5693]
Probab=99.61 E-value=1.3e-14 Score=136.64 Aligned_cols=225 Identities=10% Similarity=-0.001 Sum_probs=144.2
Q ss_pred EEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCC----HHHHHHhhccC---
Q 012176 120 TVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLND----APLLTKLFDVV--- 192 (469)
Q Consensus 120 ~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d----~~~l~~~~~~~--- 192 (469)
++|||||++.||+.++++|+++|++|++++|+.+...+.+.+... ......+..+..|+.+ .+.+.++++.+
T Consensus 3 vAlVTGas~GIG~aia~~la~~G~~Vvi~~r~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (266)
T d1mxha_ 3 AAVITGGARRIGHSIAVRLHQQGFRVVVHYRHSEGAAQRLVAELN-AARAGSAVLCKGDLSLSSSLLDCCEDIIDCSFRA 81 (266)
T ss_dssp EEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHH-HHSTTCEEEEECCCSSSTTHHHHHHHHHHHHHHH
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCchHHHHHHHHHHH-hhcCCceEEEecccccchhHHHHHHHHHHHHHHH
Confidence 689999999999999999999999999999965422111111111 1123356666666654 33344444321
Q ss_pred --CccEEEEcccccChhhh---------------ccChHHHHHHHHHHHHHHHHHHHhcC--------CCCeEEEEcCcc
Q 012176 193 --PFTHVLHLAAQAGVRYA---------------MQNPQSYVASNIAGFVNLLEVCKSVN--------PQPSIVWASSSS 247 (469)
Q Consensus 193 --~~d~Vih~Aa~~~~~~~---------------~~~~~~~~~~Nv~~~~~ll~aa~~~~--------~~~~~V~~SS~~ 247 (469)
++|++|||||....... .......+..|+.+............ ....++.+|+..
T Consensus 82 ~g~iDilvnnAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (266)
T d1mxha_ 82 FGRCDVLVNNASAYYPTPLLPGDDTNGAADAKPIDAQVAELFGSNAVAPLFLIRAFARRQGEGGAWRSRNLSVVNLCDAM 161 (266)
T ss_dssp HSCCCEEEECCCCCCCCCSCC-----------CHHHHHHHHHHHHTHHHHHHHHHHHHTC-------CCCEEEEEECCGG
T ss_pred hCCCCEEEECCccCCCCcccccccccchhcccccccccccccccccccccchhhhhccccccccccccccccchhhhhcc
Confidence 57999999997443211 11122345556666555555443321 112567777765
Q ss_pred ccCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeecceecCCCCCCChHHHHHHHHHcCCce
Q 012176 248 VYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTI 324 (469)
Q Consensus 248 vyg~~~~~~~~E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~ 324 (469)
..... .....|+.+|.+.+.+++.++.+ +||+++.|.||.+..+...+ ..+.+.+.+..|+
T Consensus 162 ~~~~~------------~~~~~Y~asKaal~~lt~~lA~e~~~~gIrVN~I~PG~i~t~~~~~----~~~~~~~~~~~pl 225 (266)
T d1mxha_ 162 TDLPL------------PGFCVYTMAKHALGGLTRAAALELAPRHIRVNAVAPGLSLLPPAMP----QETQEEYRRKVPL 225 (266)
T ss_dssp GGSCC------------TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSCCSSSC----HHHHHHHHTTCTT
T ss_pred ccccC------------cchhhhhhhHHHHhhhHHHHHHHhCccCcEEEEeccCcEeccccCC----HHHHHHHHhcCCC
Confidence 54322 34578999999999999999876 47999999999987764443 3444555555443
Q ss_pred EEEeeCCCCcceEecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCCc
Q 012176 325 DVYKTQDDREVARDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTSP 375 (469)
Q Consensus 325 ~~~~~~~~~~~~~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~~ 375 (469)
. +-+...+|+|.+++.++..... -..|+++.+.+|-.
T Consensus 226 ~-----------r~~~~peeva~~v~fL~s~~s~---~itG~~i~vDGG~~ 262 (266)
T d1mxha_ 226 G-----------QSEASAAQIADAIAFLVSKDAG---YITGTTLKVDGGLI 262 (266)
T ss_dssp T-----------SCCBCHHHHHHHHHHHHSGGGT---TCCSCEEEESTTGG
T ss_pred C-----------CCCCCHHHHHHHHHHHhCchhC---CccCCeEEECccHh
Confidence 1 1134689999999998865422 24568999988753
|
| >d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Oil seed rape (Brassica napus) [TaxId: 3708]
Probab=99.58 E-value=6.8e-14 Score=133.85 Aligned_cols=229 Identities=10% Similarity=0.000 Sum_probs=148.0
Q ss_pred CCCCCEEEEEcCCC--hhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHh----hc---------cCCe-EEEEec
Q 012176 115 RPNGMTVLVTGAAG--FVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKL----LQ---------KHQV-FIVEGD 178 (469)
Q Consensus 115 ~~~~~~VlVtGatG--~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~----~~---------~~~v-~~v~~D 178 (469)
..++|++|||||+| .||+.++++|+++|++|++.+|... ........ .. .... .....|
T Consensus 5 ~L~gK~alVTGass~~GIG~aiA~~la~~Ga~Vvi~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (297)
T d1d7oa_ 5 DLRGKRAFIAGIADDNGYGWAVAKSLAAAGAEILVGTWVPA-----LNIFETSLRRGKFDQSRVLPDGSLMEIKKVYPLD 79 (297)
T ss_dssp CCTTCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEEEHHH-----HHHHHHHHHTTTTTGGGBCTTSSBCCEEEEEEEC
T ss_pred CCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCchh-----hhhhHHHHHHhhhhhhhhhhhhhhhhhhhhhhhh
Confidence 37899999999987 8999999999999999999987321 00000000 00 0011 122222
Q ss_pred --C------------------CCHHHHHHhhccC-----CccEEEEcccccCh------hhhccChHHHHHHHHHHHHHH
Q 012176 179 --L------------------NDAPLLTKLFDVV-----PFTHVLHLAAQAGV------RYAMQNPQSYVASNIAGFVNL 227 (469)
Q Consensus 179 --l------------------~d~~~l~~~~~~~-----~~d~Vih~Aa~~~~------~~~~~~~~~~~~~Nv~~~~~l 227 (469)
+ .|...++++++.+ ++|++|||||.... +...+++...+++|+.+...+
T Consensus 80 ~~~~~~~~~~~dv~~~~~~~~~~~~~~~~~~~~~~~~~G~iDilVnnAg~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~ 159 (297)
T d1d7oa_ 80 AVFDNPEDVPEDVKANKRYAGSSNWTVQEAAECVRQDFGSIDILVHSLANGPEVSKPLLETSRKGYLAAISASSYSFVSL 159 (297)
T ss_dssp TTCCSGGGSCHHHHTSHHHHHCCCCSHHHHHHHHHHHHSCEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHH
T ss_pred hhccccccchhhhhhhhhhhhccHHHHHHHHHHHHHHhCCCcccccccccccccccchhhhhcccccccccchhhhhhhh
Confidence 2 1222223333321 57999999986321 123445667999999999999
Q ss_pred HHHHHhcCCC-CeEEEEcCccccCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHH----hCCcEEEEeecceec
Q 012176 228 LEVCKSVNPQ-PSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHI----YGLALTGLRFFTVYG 302 (469)
Q Consensus 228 l~aa~~~~~~-~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~----~gi~~~ilRp~~v~G 302 (469)
++++.....+ +.++.+++.+...... .....|..+|...+.+++.++.+ +|++++.|+||.+..
T Consensus 160 ~~~~~~~~~~~g~~~~~~~~~~~~~~~-----------~~~~~y~~aKaa~~~l~~~~a~e~~~~~gIrvN~I~PG~i~T 228 (297)
T d1d7oa_ 160 LSHFLPIMNPGGASISLTYIASERIIP-----------GYGGGMSSAKAALESDTRVLAFEAGRKQNIRVNTISAGPLGS 228 (297)
T ss_dssp HHHHGGGEEEEEEEEEEECGGGTSCCT-----------TCTTTHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCBC
T ss_pred hhHHHHHhhcCCcceeeeehhhccccc-----------ccccceecccccccccccccchhccccceEEecccccccccc
Confidence 9987654322 2456666544332110 23457999999999888776543 589999999999988
Q ss_pred CCCCCCChHHHHHHHHHcCCceEEEeeCCCCcceEecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCCC
Q 012176 303 PWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNTS 374 (469)
Q Consensus 303 p~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~~ 374 (469)
+..........+.+......|+. .+...+|+|.+++.++..... -..|+++.+.+|-
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~Plg------------R~~~peevA~~v~fL~S~~a~---~itGq~i~vDGG~ 285 (297)
T d1d7oa_ 229 RAAKAIGFIDTMIEYSYNNAPIQ------------KTLTADEVGNAAAFLVSPLAS---AITGATIYVDNGL 285 (297)
T ss_dssp CCSSCCSHHHHHHHHHHHHSSSC------------CCBCHHHHHHHHHHHTSGGGT---TCCSCEEEESTTG
T ss_pred hhhhhccCCHHHHHHHHhCCCCC------------CCCCHHHHHHHHHHHhCchhc---CCcCceEEECcCH
Confidence 87665444455666555554442 245689999999998854322 3456899888774
|
| >d1uh5a_ c.2.1.2 (A:) Enoyl-ACP reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=99.56 E-value=3.9e-14 Score=137.78 Aligned_cols=231 Identities=10% Similarity=-0.009 Sum_probs=146.0
Q ss_pred CCCEEEEEc--CCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHh-----hc-----cCCeEEEEe-------
Q 012176 117 NGMTVLVTG--AAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKL-----LQ-----KHQVFIVEG------- 177 (469)
Q Consensus 117 ~~~~VlVtG--atG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~-----~~-----~~~v~~v~~------- 177 (469)
++|.+|||| +++.||..++++|+++|.+|++..+......... ...... .. .........
T Consensus 1 n~kVAlITGaa~s~GIG~aiA~~la~~GA~V~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (329)
T d1uh5a_ 1 NEDICFIAGIGDTNGYGWGIAKELSKRNVKIIFGIWPPVYNIFMK-NYKNGKFDNDMIIDKDKKMNILDMLPFDASFDTA 79 (329)
T ss_dssp CCCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEECGGGHHHHHH-HHHTTTTTGGGEETTTEECCEEEEEECCTTCSSG
T ss_pred CCcEEEEeCCCCCChHHHHHHHHHHHcCCEEEEEeCchhhhhhhH-HHHHHhhhhHHHHHHHhhhhhhhcccccceehhh
Confidence 468999999 5579999999999999999999887432100000 000000 00 011222222
Q ss_pred -------------cCCCHHHHHHhhccC-----CccEEEEcccccCh------hhhccChHHHHHHHHHHHHHHHHHHHh
Q 012176 178 -------------DLNDAPLLTKLFDVV-----PFTHVLHLAAQAGV------RYAMQNPQSYVASNIAGFVNLLEVCKS 233 (469)
Q Consensus 178 -------------Dl~d~~~l~~~~~~~-----~~d~Vih~Aa~~~~------~~~~~~~~~~~~~Nv~~~~~ll~aa~~ 233 (469)
|+.+.+.++++++.+ ++|++|||||.... ....+++...+++|+.++..+++++..
T Consensus 80 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~G~iDilVnnag~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~k~~~~ 159 (329)
T d1uh5a_ 80 NDIDEETKNNKRYNMLQNYTIEDVANLIHQKYGKINMLVHSLANAKEVQKDLLNTSRKGYLDALSKSSYSLISLCKYFVN 159 (329)
T ss_dssp GGCCHHHHTSHHHHTCCCCSHHHHHHHHHHHHCCEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGG
T ss_pred cccchhhhhhhhhhhhhHHHHHHHHHHHHHHhCCCCeeccccccccccCCChhhhhhhhhhhhcccchhHHHHHHHHHHh
Confidence 455555555555432 67999999986432 223455678899999999999888765
Q ss_pred c-CCCCeEEEEcCccccCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHH----hCCcEEEEeecceecCC----
Q 012176 234 V-NPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHI----YGLALTGLRFFTVYGPW---- 304 (469)
Q Consensus 234 ~-~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~----~gi~~~ilRp~~v~Gp~---- 304 (469)
. ...++||.+||.+.....+ .....|+.+|.+.|.+++.++.+ +||+++.|.||.|--+.
T Consensus 160 ~m~~~GsIv~iss~~~~~~~p-----------~y~~~y~asKaal~~ltr~lA~Ela~~~gIRVNaI~PG~i~T~a~~~i 228 (329)
T d1uh5a_ 160 IMKPQSSIISLTYHASQKVVP-----------GYGGGMSSAKAALESDTRVLAYHLGRNYNIRINTISAGPLKSRAATAI 228 (329)
T ss_dssp GEEEEEEEEEEECGGGTSCCT-----------TCTTTHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCTTGGGC
T ss_pred hcccccccccceeehhccccc-----------ccchhhhhhhccccccchhhHHHHhcccCcEEEEEecCcccchhhhcc
Confidence 4 2224899999876543211 22457999999999999988754 58999999999874310
Q ss_pred ---------------------------------------CCCCChHHHHHHHHHcCCceEEEeeCCCCcceEecccHHHH
Q 012176 305 ---------------------------------------GRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDV 345 (469)
Q Consensus 305 ---------------------------------------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dv 345 (469)
.........+.+...+..|+ ..+...+|+
T Consensus 229 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pl------------~R~~~pedv 296 (329)
T d1uh5a_ 229 NKLNNTYENNTNQNKNRNRHDVHNIMNNSGEKEEKKISASQNYTFIDYAIEYSEKYAPL------------RQKLLSTDI 296 (329)
T ss_dssp C------------------------------------------CHHHHHHHHHHHHSSS------------CSCCCHHHH
T ss_pred cchhhhhhhhhhhhhccccccccccccccccccchhhhhhhcccchHHHHHHHhccCCC------------CCCcCHHHH
Confidence 00011122333333333333 234668999
Q ss_pred HHHHHHHhccCCCCCCCCCceEEEeCCCC
Q 012176 346 VKGCVGATGSGGKKRGPAQLRVYNLGNTS 374 (469)
Q Consensus 346 a~~~~~~~~~~~~~~~~~~~~iyni~~~~ 374 (469)
|.+++.++..... -..|+++.+.+|-
T Consensus 297 A~~v~fLaSd~s~---~iTGq~i~VDGG~ 322 (329)
T d1uh5a_ 297 GSVASFLLSRESR---AITGQTIYVDNGL 322 (329)
T ss_dssp HHHHHHHHSGGGT---TCCSCEEEESTTG
T ss_pred HHHHHHHhCchhC---CccCCeEEECCCc
Confidence 9999888754322 3456999998874
|
| >d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha-hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=99.46 E-value=1.3e-12 Score=122.04 Aligned_cols=218 Identities=13% Similarity=0.051 Sum_probs=129.6
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhcc------
Q 012176 118 GMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDV------ 191 (469)
Q Consensus 118 ~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~------ 191 (469)
+|+||||||++.||++++++|+++|++|++++|++.. ...|+.+.+........
T Consensus 1 mkVvlITGas~GIG~aiA~~la~~Ga~V~~~~~~~~~--------------------~~~d~~~~~~~~~~~~~~~~~~~ 60 (257)
T d1fjha_ 1 MSIIVISGCATGIGAATRKVLEAAGHQIVGIDIRDAE--------------------VIADLSTAEGRKQAIADVLAKCS 60 (257)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSSS--------------------EECCTTSHHHHHHHHHHHHTTCT
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECChHH--------------------HHHHhcCHHHHHHHHHHHHHHhC
Confidence 4789999999999999999999999999999985431 23567666554433321
Q ss_pred CCccEEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEEcCccccC-CCCCCCCCC-------
Q 012176 192 VPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCK----SVNPQPSIVWASSSSVYG-LNTQVPFSE------- 259 (469)
Q Consensus 192 ~~~d~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~----~~~~~~~~V~~SS~~vyg-~~~~~~~~E------- 259 (469)
-.+|+++||||.... .+.......+|..+...+.+... +.... ....+++..... .....+...
T Consensus 61 ~~id~lv~~Ag~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 136 (257)
T d1fjha_ 61 KGMDGLVLCAGLGPQ---TKVLGNVVSVNYFGATELMDAFLPALKKGHQP-AAVVISSVASAHLAFDKNPLALALEAGEE 136 (257)
T ss_dssp TCCSEEEECCCCCTT---CSSHHHHHHHHTHHHHHHHHHHHHHHHTSSSC-EEEEECCGGGGSSCGGGCTTHHHHHHTCH
T ss_pred CCCcEEEEcCCCCCc---HHHHHHHHHHHHHHHHHHHHHhhhhhhhhccC-cceeeeeccccchhhhhhhhhhhccCCcE
Confidence 147999999986432 24556677788888777766533 23332 556565533221 111000000
Q ss_pred --------CCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeecceecCCCCCCChHHHHHHHHHcCCceEEEe
Q 012176 260 --------SHRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYK 328 (469)
Q Consensus 260 --------~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~g~~~~~~~ 328 (469)
......+...|+.+|.+.+.+++.++.++ ||+++.|.||.|-.|.......-..+.+.+.+..
T Consensus 137 ~~i~s~~~~~~~~~~~~~Y~asKaal~~ltr~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~------ 210 (257)
T d1fjha_ 137 AKARAIVEHAGEQGGNLAYAGSKNALTVAVRKRAAAWGEAGVRLNTIAPGATETPLLQAGLQDPRYGESIAKFV------ 210 (257)
T ss_dssp HHHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHTHHHHHHTTCEEEEEEECC---------------------CC------
T ss_pred EEEeeehhccCCCcchHHHHHHhhhhhccccccccccccccccccccccCCcCChhHHhhcCCHHHHHHHHhcC------
Confidence 00000122359999999999999998664 7999999999997764321100011111111110
Q ss_pred eCCCCcceEecccHHHHHHHHHHHhccCCCCCCCCCceEEEeCCC
Q 012176 329 TQDDREVARDFTYIDDVVKGCVGATGSGGKKRGPAQLRVYNLGNT 373 (469)
Q Consensus 329 ~~~~~~~~~~~v~v~Dva~~~~~~~~~~~~~~~~~~~~iyni~~~ 373 (469)
....-+...+|+|++++.++..... -..|+++.+.+|
T Consensus 211 -----~PlgR~g~p~eva~~v~fL~S~~s~---~itG~~i~vDGG 247 (257)
T d1fjha_ 211 -----PPMGRRAEPSEMASVIAFLMSPAAS---YVHGAQIVIDGG 247 (257)
T ss_dssp -----CSTTSCCCTHHHHHHHHHHTSGGGT---TCCSCEEEESTT
T ss_pred -----CCCCCCcCHHHHHHHHHHHhCchhC---CccCceEEeCCC
Confidence 0112355789999999998754422 345689988776
|
| >d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylene-tetrahydromethanopterin dehydrogenase species: Methylobacterium extorquens [TaxId: 408]
Probab=99.16 E-value=5.5e-12 Score=112.52 Aligned_cols=83 Identities=16% Similarity=0.145 Sum_probs=68.7
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCc
Q 012176 115 RPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPF 194 (469)
Q Consensus 115 ~~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~ 194 (469)
+.++|+|+||||+|+||+.+++.|+++|++|++++|+.+. .............+.+..+|+.|.+++++++.+.
T Consensus 20 ~l~gK~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~~~----~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i-- 93 (191)
T d1luaa1 20 SVKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDK----AQAAADSVNKRFKVNVTAAETADDASRAEAVKGA-- 93 (191)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHH----HHHHHHHHHHHHTCCCEEEECCSHHHHHHHTTTC--
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHhhccchhhcccchHH----HHHHHHHHHhccchhhhhhhcccHHHHHHHhcCc--
Confidence 4789999999999999999999999999999999996542 2222233333346778899999999999999987
Q ss_pred cEEEEcccc
Q 012176 195 THVLHLAAQ 203 (469)
Q Consensus 195 d~Vih~Aa~ 203 (469)
|+||||||.
T Consensus 94 Dilin~Ag~ 102 (191)
T d1luaa1 94 HFVFTAGAI 102 (191)
T ss_dssp SEEEECCCT
T ss_pred CeeeecCcc
Confidence 999999986
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=98.33 E-value=2.6e-06 Score=70.03 Aligned_cols=95 Identities=16% Similarity=0.250 Sum_probs=68.1
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHh-hccCCccEE
Q 012176 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKL-FDVVPFTHV 197 (469)
Q Consensus 119 ~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~-~~~~~~d~V 197 (469)
|+|+|+|+ |.+|+.+++.|.+.|++|++++.+++ .. ....+..++.++.||.+|++.++++ ++.+ |.+
T Consensus 1 M~IvI~G~-G~~G~~la~~L~~~g~~v~vid~d~~-------~~-~~~~~~~~~~vi~Gd~~~~~~l~~~~i~~a--~~v 69 (132)
T d1lssa_ 1 MYIIIAGI-GRVGYTLAKSLSEKGHDIVLIDIDKD-------IC-KKASAEIDALVINGDCTKIKTLEDAGIEDA--DMY 69 (132)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHH-------HH-HHHHHHCSSEEEESCTTSHHHHHHTTTTTC--SEE
T ss_pred CEEEEECC-CHHHHHHHHHHHHCCCCcceecCChh-------hh-hhhhhhhhhhhccCcccchhhhhhcChhhh--hhh
Confidence 78999997 99999999999999999999997332 11 1112223788999999999999887 4555 888
Q ss_pred EEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEE
Q 012176 198 LHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVW 242 (469)
Q Consensus 198 ih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~ 242 (469)
+-+... . +.|+. +...+++.+.. ++|-
T Consensus 70 v~~t~~---------d----~~N~~----~~~~~k~~~~~-~iI~ 96 (132)
T d1lssa_ 70 IAVTGK---------E----EVNLM----SSLLAKSYGIN-KTIA 96 (132)
T ss_dssp EECCSC---------H----HHHHH----HHHHHHHTTCC-CEEE
T ss_pred cccCCc---------H----HHHHH----HHHHHHHcCCc-eEEE
Confidence 876432 1 23432 33456777876 6663
|
| >d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.24 E-value=3.9e-06 Score=70.00 Aligned_cols=114 Identities=21% Similarity=0.150 Sum_probs=78.8
Q ss_pred EEEEEcCCChhHHHHHHHHHHCCC--cEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCccEE
Q 012176 120 TVLVTGAAGFVGSHCSLALKKRGD--GVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTHV 197 (469)
Q Consensus 120 ~VlVtGatG~IG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~d~V 197 (469)
||.|+||+|.+|+.++..|..+|. ++.+++..+. +..........-......- ....+..+.++++ |+|
T Consensus 2 Kv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~~------~~~a~Dl~~~~~~~~~~~~-~~~~~~~~~~~~a--Div 72 (144)
T d1mlda1 2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHT------PGVAADLSHIETRATVKGY-LGPEQLPDCLKGC--DVV 72 (144)
T ss_dssp EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSH------HHHHHHHTTSSSSCEEEEE-ESGGGHHHHHTTC--SEE
T ss_pred eEEEECCCChHHHHHHHHHHhCCccceEEEEecccc------chhhHHHhhhhhhcCCCeE-EcCCChHHHhCCC--CEE
Confidence 689999999999999999998874 7888887431 1111222211111111211 2345566778888 999
Q ss_pred EEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEc
Q 012176 198 LHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWAS 244 (469)
Q Consensus 198 ih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~S 244 (469)
|-+||.. +-...+..+.+..|+...+.+++.+++++....++.+|
T Consensus 73 Vitag~~--~~~g~sR~~ll~~N~~i~~~i~~~i~~~~p~~iiivvt 117 (144)
T d1mlda1 73 VIPAGVP--RKPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIIS 117 (144)
T ss_dssp EECCSCC--CCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECS
T ss_pred EECCCcC--CCCCCCcchHHHHHHHHHHHHHHHHHhcCCCeEEEEec
Confidence 9999963 22334566789999999999999999998875666665
|
| >d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Lactobacillus pentosus [TaxId: 1589]
Probab=98.19 E-value=3.4e-06 Score=70.50 Aligned_cols=113 Identities=18% Similarity=0.188 Sum_probs=73.6
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCC--CcEEEEeCCCCCCChhHHHHHHHh----hccCCeEEEEecCCCHHHHHHhh
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRG--DGVLGLDNFNSYYDPSLKRARQKL----LQKHQVFIVEGDLNDAPLLTKLF 189 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G--~~V~~~~r~~~~~~~~~~~~~~~~----~~~~~v~~v~~Dl~d~~~l~~~~ 189 (469)
.+.|||.|+|+ |++|..++..|+.+| .+|+++|+.+. ..+...... .......+..+|. + .+
T Consensus 3 ~~~~KI~IIGa-G~VG~~~A~~l~~~~~~~elvL~D~~~~----~~~g~a~Dl~~a~~~~~~~~~~~~d~---~----~~ 70 (146)
T d1ez4a1 3 PNHQKVVLVGD-GAVGSSYAFAMAQQGIAEEFVIVDVVKD----RTKGDALDLEDAQAFTAPKKIYSGEY---S----DC 70 (146)
T ss_dssp TTBCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHH----HHHHHHHHHHGGGGGSCCCEEEECCG---G----GG
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhcCCCcEEEEeecccc----hhHHHHHHHhccccccCCceEeeccH---H----Hh
Confidence 45789999996 999999999999987 68999998432 111111111 1122345555553 2 35
Q ss_pred ccCCccEEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEc
Q 012176 190 DVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWAS 244 (469)
Q Consensus 190 ~~~~~d~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~S 244 (469)
+++ |+||.+||... ....+..+....|+.-.+.+++.+.+.+.+..+|.+|
T Consensus 71 ~~a--divvitag~~~--~~g~~r~~l~~~N~~i~~~~~~~i~~~~p~aivivvt 121 (146)
T d1ez4a1 71 KDA--DLVVITAGAPQ--KPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVAA 121 (146)
T ss_dssp TTC--SEEEECCCC------------CHHHHHHHHHHHHHHHHHTTCCSEEEECS
T ss_pred ccc--cEEEEeccccc--CCCCCHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEeC
Confidence 667 99999998632 2234455678889999999999999998875555555
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=98.03 E-value=2.5e-05 Score=63.93 Aligned_cols=72 Identities=18% Similarity=0.177 Sum_probs=56.8
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHh-hccCCccEE
Q 012176 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKL-FDVVPFTHV 197 (469)
Q Consensus 119 ~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~-~~~~~~d~V 197 (469)
|+++|+|+ |-+|+++++.|.++|++|++++.+. .....+...+...+.||.+|++.++++ ++.+ |.|
T Consensus 1 k~~iIiG~-G~~G~~la~~L~~~g~~vvvid~d~---------~~~~~~~~~~~~~~~gd~~~~~~l~~a~i~~a--~~v 68 (134)
T d2hmva1 1 KQFAVIGL-GRFGGSIVKELHRMGHEVLAVDINE---------EKVNAYASYATHAVIANATEENELLSLGIRNF--EYV 68 (134)
T ss_dssp CCEEEECC-SHHHHHHHHHHHHTTCCCEEEESCH---------HHHHHTTTTCSEEEECCTTCTTHHHHHTGGGC--SEE
T ss_pred CEEEEECC-CHHHHHHHHHHHHCCCeEEEecCcH---------HHHHHHHHhCCcceeeecccchhhhccCCccc--cEE
Confidence 46888886 9999999999999999999999732 122223445778899999999999887 6666 888
Q ss_pred EEccc
Q 012176 198 LHLAA 202 (469)
Q Consensus 198 ih~Aa 202 (469)
|-...
T Consensus 69 i~~~~ 73 (134)
T d2hmva1 69 IVAIG 73 (134)
T ss_dssp EECCC
T ss_pred EEEcC
Confidence 76654
|
| >d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=98.01 E-value=2e-05 Score=65.57 Aligned_cols=112 Identities=21% Similarity=0.130 Sum_probs=74.9
Q ss_pred CEEEEEcCCChhHHHHHHHHHH-C--CCcEEEEeCCCCCCChhHHHHHHHhhcc---CCeEEEEecCCCHHHHHHhhccC
Q 012176 119 MTVLVTGAAGFVGSHCSLALKK-R--GDGVLGLDNFNSYYDPSLKRARQKLLQK---HQVFIVEGDLNDAPLLTKLFDVV 192 (469)
Q Consensus 119 ~~VlVtGatG~IG~~l~~~L~~-~--G~~V~~~~r~~~~~~~~~~~~~~~~~~~---~~v~~v~~Dl~d~~~l~~~~~~~ 192 (469)
|||.|+|++|.+|++++-.|.. . +.++.+++..+ ..+.....+..- .....+ ..-.+ ++ .++++
T Consensus 1 MKV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~~-----~~~g~a~Dl~h~~~~~~~~~~-~~~~~---~~-~~~~a 70 (145)
T d2cmda1 1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAP-----VTPGVAVDLSHIPTAVKIKGF-SGEDA---TP-ALEGA 70 (145)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSST-----THHHHHHHHHTSCSSCEEEEE-CSSCC---HH-HHTTC
T ss_pred CEEEEEcCCChHHHHHHHHHHhCCCCCcEEEEecccc-----cchhHHHHHHCCccccCCcEE-EcCCC---cc-ccCCC
Confidence 7899999999999999988754 3 47899998632 122222222221 122222 12222 33 56677
Q ss_pred CccEEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEc
Q 012176 193 PFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWAS 244 (469)
Q Consensus 193 ~~d~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~S 244 (469)
|+||-+||.. +-...+..+.+..|..-.+.+.+.+.+.+....+|.+|
T Consensus 71 --DvvvitaG~~--~k~g~~R~dl~~~N~~i~~~v~~~i~~~~p~aivivvt 118 (145)
T d2cmda1 71 --DVVLISAGVR--RKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIIT 118 (145)
T ss_dssp --SEEEECCSCC--CCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECS
T ss_pred --CEEEECCCcc--CCCCcchhhHHHHHHHHHHHHHHHHHhhCCCcEEEEcc
Confidence 9999999973 22334666788999999999999999988775666666
|
| >d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Saccharopine reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=97.94 E-value=2.3e-05 Score=67.08 Aligned_cols=75 Identities=21% Similarity=0.137 Sum_probs=56.1
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCccEE
Q 012176 118 GMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTHV 197 (469)
Q Consensus 118 ~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~d~V 197 (469)
.|+|+|.|| |++|+++++.|.++||+|++++|+.+ +...-............+..+.......+... |.+
T Consensus 2 ~K~IliiGa-G~~G~~~a~~L~~~g~~V~v~dr~~~-------~a~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~--~~~ 71 (182)
T d1e5qa1 2 TKSVLMLGS-GFVTRPTLDVLTDSGIKVTVACRTLE-------SAKKLSAGVQHSTPISLDVNDDAALDAEVAKH--DLV 71 (182)
T ss_dssp CCEEEEECC-STTHHHHHHHHHTTTCEEEEEESCHH-------HHHHHHTTCTTEEEEECCTTCHHHHHHHHTTS--SEE
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCEEEEEECChH-------HHHHHHhcccccccccccccchhhhHhhhhcc--cee
Confidence 589999997 99999999999999999999999432 22221122335566667777888888888776 888
Q ss_pred EEccc
Q 012176 198 LHLAA 202 (469)
Q Consensus 198 ih~Aa 202 (469)
+.+..
T Consensus 72 i~~~~ 76 (182)
T d1e5qa1 72 ISLIP 76 (182)
T ss_dssp EECSC
T ss_pred Eeecc
Confidence 86653
|
| >d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: MJ0490, lactate/malate dehydrogenase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=97.94 E-value=1.3e-05 Score=66.78 Aligned_cols=115 Identities=17% Similarity=0.174 Sum_probs=76.3
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCC--CcEEEEeCCCCCCChhHHHHHHHhh-----ccCCeEEEEecCCCHHHHHHhhcc
Q 012176 119 MTVLVTGAAGFVGSHCSLALKKRG--DGVLGLDNFNSYYDPSLKRARQKLL-----QKHQVFIVEGDLNDAPLLTKLFDV 191 (469)
Q Consensus 119 ~~VlVtGatG~IG~~l~~~L~~~G--~~V~~~~r~~~~~~~~~~~~~~~~~-----~~~~v~~v~~Dl~d~~~l~~~~~~ 191 (469)
|||.|+||+|.+|..++..|+.+| .++.++++.+.- ...+....... ....+.+...--.|. +.+++
T Consensus 1 MKV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~~~~--~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~d~----~~l~~ 74 (145)
T d1hyea1 1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSI--NKLEGLREDIYDALAGTRSDANIYVESDENL----RIIDE 74 (145)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGH--HHHHHHHHHHHHHHTTSCCCCEEEEEETTCG----GGGTT
T ss_pred CEEEEECCCChHHHHHHHHHHhCCcccccccccchhhh--HhhhcccccchhcccccccCCccccCCcchH----HHhcc
Confidence 689999999999999999999988 589999974320 00111111111 122344433222222 35667
Q ss_pred CCccEEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEc
Q 012176 192 VPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWAS 244 (469)
Q Consensus 192 ~~~d~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~S 244 (469)
+ |+||-+||.. +-...+..+.++.|..-.+.+++..++.+.. .++.+|
T Consensus 75 a--DvVVitAG~~--~~~g~sR~dl~~~Na~iv~~i~~~i~~~~~~-~iivVt 122 (145)
T d1hyea1 75 S--DVVIITSGVP--RKEGMSRMDLAKTNAKIVGKYAKKIAEICDT-KIFVIT 122 (145)
T ss_dssp C--SEEEECCSCC--CCTTCCHHHHHHHHHHHHHHHHHHHHHHCCC-EEEECS
T ss_pred c--eEEEEecccc--cCCCCChhhhhhhhHHHHHHHHHHHhccCCC-eEEEEc
Confidence 7 9999999963 2233456788999999999999999888764 555453
|
| >d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Clostridium thermocellum [TaxId: 1515]
Probab=97.86 E-value=6.2e-05 Score=62.28 Aligned_cols=114 Identities=17% Similarity=0.133 Sum_probs=72.2
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCC--cEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCccE
Q 012176 119 MTVLVTGAAGFVGSHCSLALKKRGD--GVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTH 196 (469)
Q Consensus 119 ~~VlVtGatG~IG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~d~ 196 (469)
+||.|+|+ |.+|..++-.|+.+|. ++.++|+..+.......................+| . +.++++ |+
T Consensus 2 ~KI~IIGa-G~VG~~~a~~l~~~~l~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~---~----~~~~~a--di 71 (142)
T d1y6ja1 2 SKVAIIGA-GFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYAGD---Y----SDVKDC--DV 71 (142)
T ss_dssp CCEEEECC-SHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC--C---G----GGGTTC--SE
T ss_pred CeEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeccCCccceeeeeeccCcccCCCeeEeeCc---H----HHhCCC--ce
Confidence 47889997 9999999999999864 89999987653322111111000011233333332 2 345667 99
Q ss_pred EEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEc
Q 012176 197 VLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWAS 244 (469)
Q Consensus 197 Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~S 244 (469)
||-.||.. +....+..+....|+.-.+.+++.+++.+.+..+|.+|
T Consensus 72 vvitag~~--~~~~~~r~~l~~~N~~i~~~i~~~i~~~~p~ai~ivvt 117 (142)
T d1y6ja1 72 IVVTAGAN--RKPGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILVVS 117 (142)
T ss_dssp EEECCCC--------CHHHHHHHHHHHHHHHHHHHHHHCCSCEEEECS
T ss_pred EEEecccc--cCcCcchhHHhhHHHHHHHHHHHHhhccCCCceEEEec
Confidence 99999863 22345667889999999999999999988775566555
|
| >d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.84 E-value=4.9e-05 Score=63.42 Aligned_cols=114 Identities=25% Similarity=0.225 Sum_probs=78.4
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCC--cEEEEeCCCCCCChhHHHHHHHhh-----ccCCeEEEEecCCCHHHHHH
Q 012176 115 RPNGMTVLVTGAAGFVGSHCSLALKKRGD--GVLGLDNFNSYYDPSLKRARQKLL-----QKHQVFIVEGDLNDAPLLTK 187 (469)
Q Consensus 115 ~~~~~~VlVtGatG~IG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~-----~~~~v~~v~~Dl~d~~~l~~ 187 (469)
...++||.|+|| |++|..++..|+..|. ++.++|+.++. .+.....+. ....+.+..+|. +
T Consensus 3 ~~~~~KI~IiGa-G~vG~~~a~~l~~~~l~~el~L~Di~~~~----~~g~a~Dl~~~~~~~~~~~~~~~~d~-------~ 70 (148)
T d1ldna1 3 NNGGARVVVIGA-GFVGASYVFALMNQGIADEIVLIDANESK----AIGDAMDFNHGKVFAPKPVDIWHGDY-------D 70 (148)
T ss_dssp TTTSCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHH----HHHHHHHHHHHTTSSSSCCEEEECCG-------G
T ss_pred CCCCCeEEEECc-CHHHHHHHHHHHhcCCCceEEEEeecccc----ccchhccHhhCccccCCCeEEEECCH-------H
Confidence 356679999997 9999999999999874 89999974321 111111111 122455555443 3
Q ss_pred hhccCCccEEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEc
Q 012176 188 LFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWAS 244 (469)
Q Consensus 188 ~~~~~~~d~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~S 244 (469)
.++++ |+||.++|... .......+....|..-.+.+.+.+++++....+|.+|
T Consensus 71 ~l~da--Dvvvitag~~~--~~~~~R~dl~~~N~~i~~~i~~~i~~~~p~a~~ivvt 123 (148)
T d1ldna1 71 DCRDA--DLVVICAGANQ--KPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVAT 123 (148)
T ss_dssp GTTTC--SEEEECCSCCC--CTTTCSGGGHHHHHHHHHHHHHHHHHHTCCSEEEECS
T ss_pred Hhccc--eeEEEeccccc--ccCcchhHHHHHHHHHHHHHHHHHHhhCCCceEEEec
Confidence 46667 99999998632 2234556778889999999999999988775666665
|
| >d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Haloarcula marismortui [TaxId: 2238]
Probab=97.80 E-value=7.1e-05 Score=61.81 Aligned_cols=112 Identities=17% Similarity=0.051 Sum_probs=76.5
Q ss_pred EEEEEcCCChhHHHHHHHHHHCCC--cEEEEeCCCCCCChhHHHHHHHhh----ccCCeEEEEecCCCHHHHHHhhccCC
Q 012176 120 TVLVTGAAGFVGSHCSLALKKRGD--GVLGLDNFNSYYDPSLKRARQKLL----QKHQVFIVEGDLNDAPLLTKLFDVVP 193 (469)
Q Consensus 120 ~VlVtGatG~IG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~----~~~~v~~v~~Dl~d~~~l~~~~~~~~ 193 (469)
||.|+||+|.+|..++..|+.+|. ++.+++..... ...+.....+. -.....+..+|. + .++++
T Consensus 2 KV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di~~~~--~~~~g~a~Dl~~~~~~~~~~~i~~~~~---~----~~~~a- 71 (142)
T d1o6za1 2 KVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKE--DDTVGQAADTNHGIAYDSNTRVRQGGY---E----DTAGS- 71 (142)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGH--HHHHHHHHHHHHHHTTTCCCEEEECCG---G----GGTTC-
T ss_pred eEEEECCCCcHHHHHHHHHHhCCCCCEEEEEecCCcc--cccceeecchhhcccccCCceEeeCCH---H----Hhhhc-
Confidence 689999999999999999999874 78888852210 01111111111 123455555543 2 24567
Q ss_pred ccEEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEc
Q 012176 194 FTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWAS 244 (469)
Q Consensus 194 ~d~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~S 244 (469)
|+||-.||.. +-...+..+.+..|..-.+.+.+..++.+.+..++.+|
T Consensus 72 -DiVvitaG~~--~~~g~~R~dl~~~N~~I~~~i~~~i~~~~p~~i~ivvt 119 (142)
T d1o6za1 72 -DVVVITAGIP--RQPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYISLTTS 119 (142)
T ss_dssp -SEEEECCCCC--CCTTCCHHHHHHHHHHHHHHHHHHHHTTCSCCEEEECC
T ss_pred -CEEEEecccc--cccCCchhhHHHHHHHHHHHHHHHHHhcCCCceEEEec
Confidence 9999999863 23335677899999999999999999998775666665
|
| >d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=97.76 E-value=8.6e-05 Score=61.23 Aligned_cols=110 Identities=16% Similarity=0.169 Sum_probs=74.7
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCC--CcEEEEeCCCCCCChhHHHHHHHhh----ccCCeEEEEecCCCHHHHHHhhccC
Q 012176 119 MTVLVTGAAGFVGSHCSLALKKRG--DGVLGLDNFNSYYDPSLKRARQKLL----QKHQVFIVEGDLNDAPLLTKLFDVV 192 (469)
Q Consensus 119 ~~VlVtGatG~IG~~l~~~L~~~G--~~V~~~~r~~~~~~~~~~~~~~~~~----~~~~v~~v~~Dl~d~~~l~~~~~~~ 192 (469)
|||.|+|+ |.+|..++..|+.++ .++.++|+++.. .+....... -.....+..+| . +.++++
T Consensus 1 mKI~IIGa-G~VG~~~a~~l~~~~l~~el~L~Di~~~~----~~g~~~Dl~~~~~~~~~~~~~~~~---~----~~~~~a 68 (140)
T d1a5za1 1 MKIGIVGL-GRVGSSTAFALLMKGFAREMVLIDVDKKR----AEGDALDLIHGTPFTRRANIYAGD---Y----ADLKGS 68 (140)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHH----HHHHHHHHHHHGGGSCCCEEEECC---G----GGGTTC
T ss_pred CEEEEECc-CHHHHHHHHHHHhCCCCCEEEEEeccccc----ccchhccccccccccccccccCCc---H----HHhcCC
Confidence 68999997 999999999888886 589999875421 111111111 12244444433 2 236677
Q ss_pred CccEEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEc
Q 012176 193 PFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWAS 244 (469)
Q Consensus 193 ~~d~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~S 244 (469)
|+||-+||... -......+....|..-.+.+++...+.+....++.+|
T Consensus 69 --divvitag~~~--~~g~~r~dl~~~N~~I~~~i~~~i~~~~p~aivivvt 116 (140)
T d1a5za1 69 --DVVIVAAGVPQ--KPGETRLQLLGRNARVMKEIARNVSKYAPDSIVIVVT 116 (140)
T ss_dssp --SEEEECCCCCC--CSSCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECS
T ss_pred --CEEEEeccccc--CCCcchhhhhccccchHHHHHHHHHhcCCCcEEEEeC
Confidence 99999998732 2234556788889999999999999988875555554
|
| >d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chlorobium vibrioforme [TaxId: 1098]
Probab=97.67 E-value=5.3e-05 Score=62.72 Aligned_cols=111 Identities=16% Similarity=0.134 Sum_probs=75.1
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCC--CcEEEEeCCCCCCChhHHHHHHHhh-----ccCCeEEEEecCCCHHHHHHhhcc
Q 012176 119 MTVLVTGAAGFVGSHCSLALKKRG--DGVLGLDNFNSYYDPSLKRARQKLL-----QKHQVFIVEGDLNDAPLLTKLFDV 191 (469)
Q Consensus 119 ~~VlVtGatG~IG~~l~~~L~~~G--~~V~~~~r~~~~~~~~~~~~~~~~~-----~~~~v~~v~~Dl~d~~~l~~~~~~ 191 (469)
|||.|+|| |.+|..++..|+..| .++.++|+++... ........ ......+... .|. +.+++
T Consensus 1 mKI~IIGa-G~VG~~la~~l~~~~l~~el~L~Di~~~~~----~~~~~d~~~~~~~~~~~~~i~~~--~~~----~~~~d 69 (142)
T d1guza1 1 MKITVIGA-GNVGATTAFRLAEKQLARELVLLDVVEGIP----QGKALDMYESGPVGLFDTKVTGS--NDY----ADTAN 69 (142)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSSSHH----HHHHHHHHTTHHHHTCCCEEEEE--SCG----GGGTT
T ss_pred CEEEEECc-CHHHHHHHHHHHhCCCCceEEEeccccccc----hhhhhhhhcccchhcccceEEec--CCH----HHhcC
Confidence 68999996 999999999999987 6899999866421 11111111 1223444322 222 24566
Q ss_pred CCccEEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEc
Q 012176 192 VPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWAS 244 (469)
Q Consensus 192 ~~~d~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~S 244 (469)
+ |+||-+||... -...+..+....|..-.+.+++.+.+.+....++.+|
T Consensus 70 a--dvvvitag~~~--~~g~~r~~l~~~N~~i~~~i~~~i~~~~p~aivivvt 118 (142)
T d1guza1 70 S--DIVIITAGLPR--KPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIVVS 118 (142)
T ss_dssp C--SEEEECCSCCC--CTTCCHHHHHHHHHHHHHHHHHHHHHHCSSCEEEECC
T ss_pred C--eEEEEEEecCC--CCCCchHHHHHHHHHHHHHHHHHhhccCCCeEEEEec
Confidence 7 99999998632 2224456788999999999999999888764555554
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=97.62 E-value=0.00019 Score=61.77 Aligned_cols=107 Identities=22% Similarity=0.177 Sum_probs=68.6
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEE--EecCCCHHHHHHhhccCC
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIV--EGDLNDAPLLTKLFDVVP 193 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v--~~Dl~d~~~l~~~~~~~~ 193 (469)
..+.+|||+||+|.+|...++.....|.+|++++++.+ +.+.....+...+ .-|-...+.+.+.....+
T Consensus 28 ~~G~~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~~~~~---------~~~~~~~~Ga~~vi~~~~~~~~~~~~~~~~~~G 98 (182)
T d1v3va2 28 KGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDE---------KIAYLKQIGFDAAFNYKTVNSLEEALKKASPDG 98 (182)
T ss_dssp CSSCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHH---------HHHHHHHTTCSEEEETTSCSCHHHHHHHHCTTC
T ss_pred CCCCEEEEEeCCCchhHHHHHHHHccCCEEEEeCCCHH---------HHHHHHhhhhhhhcccccccHHHHHHHHhhcCC
Confidence 46789999999999999999999999999999997321 1222222232222 223333344555555567
Q ss_pred ccEEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcCccccCCC
Q 012176 194 FTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLN 252 (469)
Q Consensus 194 ~d~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS~~vyg~~ 252 (469)
+|+||++.|.. .....+++++..| +++.+.....|+..
T Consensus 99 vd~v~D~vG~~------------------~~~~~~~~l~~~G---~~v~~G~~~~~~~~ 136 (182)
T d1v3va2 99 YDCYFDNVGGE------------------FLNTVLSQMKDFG---KIAICGAISVYNRM 136 (182)
T ss_dssp EEEEEESSCHH------------------HHHHHGGGEEEEE---EEEECCCGGGTTCT
T ss_pred CceeEEecCch------------------hhhhhhhhccCCC---eEEeecceeecccc
Confidence 89999998741 1223444444444 78888776666533
|
| >d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]
Probab=97.58 E-value=0.00036 Score=59.61 Aligned_cols=118 Identities=18% Similarity=0.127 Sum_probs=74.1
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHC---CC----cEEEEeCCCCCCChhHHHHHHHhh--ccCCeEEEEecCCCHHHHHH
Q 012176 117 NGMTVLVTGAAGFVGSHCSLALKKR---GD----GVLGLDNFNSYYDPSLKRARQKLL--QKHQVFIVEGDLNDAPLLTK 187 (469)
Q Consensus 117 ~~~~VlVtGatG~IG~~l~~~L~~~---G~----~V~~~~r~~~~~~~~~~~~~~~~~--~~~~v~~v~~Dl~d~~~l~~ 187 (469)
+..+|.||||+|.||++++-.|+.. |. .++.++.... ...+.....+.. ..+....+..- ....+
T Consensus 23 ~~~kV~I~GA~G~Ig~~l~~~La~g~v~g~~~~i~L~L~di~~~--~~~l~g~~mdl~d~a~~~~~~~~~~----~~~~~ 96 (175)
T d7mdha1 23 KLVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERS--FQALEGVAMELEDSLYPLLREVSIG----IDPYE 96 (175)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGG--HHHHHHHHHHHHTTTCTTEEEEEEE----SCHHH
T ss_pred CCcEEEEECCCcHHHHHHHHHHHcCcccCCCceEEEEEecCccc--cchhcchhhhhcccccccccCcccc----ccchh
Confidence 3458999999999999999999875 22 4455554221 111111111111 11222222211 12456
Q ss_pred hhccCCccEEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCC-CCeEEEEc
Q 012176 188 LFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNP-QPSIVWAS 244 (469)
Q Consensus 188 ~~~~~~~d~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~-~~~~V~~S 244 (469)
.++++ |+||-.+|. ++.......+.+..|..-.+.+.+++.+... ..+++.+|
T Consensus 97 ~~~~a--DvVvi~ag~--~rkpg~tR~Dll~~N~~I~k~~~~~i~~~a~~~~~vlvv~ 150 (175)
T d7mdha1 97 VFEDV--DWALLIGAK--PRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVG 150 (175)
T ss_dssp HTTTC--SEEEECCCC--CCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECS
T ss_pred hccCC--ceEEEeecc--CCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCcEEEEec
Confidence 77888 999999987 3344467778999999999999999988643 32565555
|
| >d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]
Probab=97.56 E-value=0.00031 Score=57.91 Aligned_cols=110 Identities=20% Similarity=0.176 Sum_probs=74.3
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCC--cEEEEeCCCCCCChhHHHHH-HHhhc----cCCeEEEEecCCCHHHHHHhhcc
Q 012176 119 MTVLVTGAAGFVGSHCSLALKKRGD--GVLGLDNFNSYYDPSLKRAR-QKLLQ----KHQVFIVEGDLNDAPLLTKLFDV 191 (469)
Q Consensus 119 ~~VlVtGatG~IG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~-~~~~~----~~~v~~v~~Dl~d~~~l~~~~~~ 191 (469)
.||.|+|+ |.+|.+++-.|+.+|. ++.++++.+. +.+.. ..+.. .....+...+ | + +.+++
T Consensus 2 ~Ki~IIGa-G~VG~~~a~~l~~~~l~~ElvL~D~~~~-----~~~g~a~Dl~~a~~~~~~~~i~~~~--~---~-~~~~d 69 (143)
T d1llda1 2 TKLAVIGA-GAVGSTLAFAAAQRGIAREIVLEDIAKE-----RVEAEVLDMQHGSSFYPTVSIDGSD--D---P-EICRD 69 (143)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSHH-----HHHHHHHHHHHTGGGSTTCEEEEES--C---G-GGGTT
T ss_pred CEEEEECC-CHHHHHHHHHHHhcCCCcEEEEEEeccc-----cchhHHHHHHhccccCCCceeecCC--C---H-HHhhC
Confidence 47899997 9999999999999874 8999987432 11111 11111 1123333322 2 2 23566
Q ss_pred CCccEEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEc
Q 012176 192 VPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWAS 244 (469)
Q Consensus 192 ~~~d~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~S 244 (469)
+ |+||-.||.. +-...+..+.+..|..-.+.+...+++.+....+|.+|
T Consensus 70 a--DvVVitaG~~--~~~g~~R~dl~~~N~~i~~~i~~~i~~~~p~ai~ivvt 118 (143)
T d1llda1 70 A--DMVVITAGPR--QKPGQSRLELVGATVNILKAIMPNLVKVAPNAIYMLIT 118 (143)
T ss_dssp C--SEEEECCCCC--CCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECC
T ss_pred C--cEEEEecccc--cCCCCchhhhhhhhHHHHHHHHHHHHhhCCCeEEEEeC
Confidence 6 9999999973 22335566889999999999999999998775566665
|
| >d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Toxoplasma gondii [TaxId: 5811]
Probab=97.55 E-value=9e-05 Score=62.17 Aligned_cols=120 Identities=13% Similarity=0.057 Sum_probs=76.0
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCC-cEEEEeCCCCCCChhHHHHHHHh--hccCCeEEEEecCCCHHHHHHhhccC
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGD-GVLGLDNFNSYYDPSLKRARQKL--LQKHQVFIVEGDLNDAPLLTKLFDVV 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~--~~~~~v~~v~~Dl~d~~~l~~~~~~~ 192 (469)
.+.+||.|+|+ |.+|..++..|...+. +++++|.++...... ....... ........... ...++.++++
T Consensus 5 ~k~~KI~IIGa-G~VG~~lA~~l~~~~~~el~L~D~~~~~~~g~-a~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~a 77 (154)
T d1pzga1 5 QRRKKVAMIGS-GMIGGTMGYLCALRELADVVLYDVVKGMPEGK-ALDLSHVTSVVDTNVSVRAE-----YSYEAALTGA 77 (154)
T ss_dssp SCCCEEEEECC-SHHHHHHHHHHHHHTCCEEEEECSSSSHHHHH-HHHHHHHHHHTTCCCCEEEE-----CSHHHHHTTC
T ss_pred cCCCcEEEECC-CHHHHHHHHHHHhCCCceEEEEEeccccchhH-HHHHhhhccccCCeeEEecc-----CchhhhhcCC
Confidence 45679999997 9999999988888774 899988755421111 0111110 01111111111 1234567778
Q ss_pred CccEEEEcccccChhh---hccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEc
Q 012176 193 PFTHVLHLAAQAGVRY---AMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWAS 244 (469)
Q Consensus 193 ~~d~Vih~Aa~~~~~~---~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~S 244 (469)
|+||-++|.....- ...+..+....|..-.+.+++.+++.+....|+.+|
T Consensus 78 --diVvitag~~~~~g~~~~~~tR~~l~~~n~~iv~~i~~~i~~~~p~aiviivs 130 (154)
T d1pzga1 78 --DCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTFIIVVT 130 (154)
T ss_dssp --SEEEECCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECC
T ss_pred --CeEEEecccccCCCCCCcccchhhhhhhhHHHHHHHHHHHHhcCCCcEEEEeC
Confidence 99999998643211 112455678889999999999999998874555554
|
| >d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=97.54 E-value=0.00039 Score=58.12 Aligned_cols=118 Identities=17% Similarity=0.063 Sum_probs=72.8
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCC----c---EEEEeCCCCCCChhHHHHHHHh--hccCCeEEEEecCCCHHHHHH
Q 012176 117 NGMTVLVTGAAGFVGSHCSLALKKRGD----G---VLGLDNFNSYYDPSLKRARQKL--LQKHQVFIVEGDLNDAPLLTK 187 (469)
Q Consensus 117 ~~~~VlVtGatG~IG~~l~~~L~~~G~----~---V~~~~r~~~~~~~~~~~~~~~~--~~~~~v~~v~~Dl~d~~~l~~ 187 (469)
+.|+|.|+||+|++|++++..|...+. . ..+++-.. ............ ........+...-. ..+
T Consensus 3 ~p~KV~IiGA~G~VG~~~a~~l~~~~l~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~ 76 (154)
T d1y7ta1 3 APVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQ--AMKALEGVVMELEDCAFPLLAGLEATDD----PKV 76 (154)
T ss_dssp CCEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGG--GHHHHHHHHHHHHTTTCTTEEEEEEESC----HHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhccccccccchhHhHhcccc--chhhHcCchhhhhccccccccccccCCc----hhh
Confidence 457999999999999999999998652 1 12222110 011111111111 11224444444322 346
Q ss_pred hhccCCccEEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCC-CCeEEEEc
Q 012176 188 LFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNP-QPSIVWAS 244 (469)
Q Consensus 188 ~~~~~~~d~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~-~~~~V~~S 244 (469)
.++++ |+||-+||.. +-...+..+.+..|+.-.+.+.+.+.+... ...++.+|
T Consensus 77 ~~~~a--dvViitaG~~--~~pg~~r~dl~~~N~~i~~~~~~~i~k~a~~~~~vivvs 130 (154)
T d1y7ta1 77 AFKDA--DYALLVGAAP--RKAGMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVG 130 (154)
T ss_dssp HTTTC--SEEEECCCCC--CCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECS
T ss_pred hcccc--cEEEeecCcC--CCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEec
Confidence 77778 9999999973 233456678899999999999999888643 32455555
|
| >d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]
Probab=97.41 E-value=0.00069 Score=56.79 Aligned_cols=113 Identities=17% Similarity=0.184 Sum_probs=76.3
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCC--cEEEEeCCCCCCChhHHHHHHHhh-----ccCCeEEEEecCCCHHHHHHh
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGD--GVLGLDNFNSYYDPSLKRARQKLL-----QKHQVFIVEGDLNDAPLLTKL 188 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~-----~~~~v~~v~~Dl~d~~~l~~~ 188 (469)
...+||.|+|+ |.+|..++-.|..+|. ++.++|+.++ ..+.....+. .........+| .+ .
T Consensus 18 ~~~~KV~IIGa-G~VG~~~A~~l~~~~l~~ElvLiD~~~~----~a~g~alDl~h~~~~~~~~~~~~~~d---~~----~ 85 (160)
T d1i0za1 18 VPNNKITVVGV-GQVGMACAISILGKSLADELALVDVLED----KLKGEMMDLQHGSLFLQTPKIVADKD---YS----V 85 (160)
T ss_dssp CCSSEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSCHH----HHHHHHHHHHHTGGGCCCSEEEECSS---GG----G
T ss_pred CCCCeEEEECC-CHHHHHHHHHHHhcCCCcEEEEEEeccc----hhHHHHHHHhccccccCCCeEEeccc---hh----h
Confidence 34569999996 9999999999999985 8999987432 1111111111 11122222223 22 3
Q ss_pred hccCCccEEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEc
Q 012176 189 FDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWAS 244 (469)
Q Consensus 189 ~~~~~~d~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~S 244 (469)
++++ |+||..||... ....+..+....|+.-.+.++...++.+.+.-+|.+|
T Consensus 86 ~~~a--diVVitAg~~~--~~g~tR~~l~~~N~~i~~~i~~~i~~~~p~aiiivvt 137 (160)
T d1i0za1 86 TANS--KIVVVTAGVRQ--QEGESRLNLVQRNVNVFKFIIPQIVKYSPDCIIIVVS 137 (160)
T ss_dssp GTTC--SEEEECCSCCC--CTTCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECS
T ss_pred cccc--cEEEEecCCcc--ccCcchHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeC
Confidence 5667 99999999733 2234556788899999999999999988775677666
|
| >d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Glycinamide ribonucleotide transformylase PurT, N-domain species: Escherichia coli [TaxId: 562]
Probab=97.38 E-value=0.00039 Score=54.64 Aligned_cols=73 Identities=14% Similarity=0.205 Sum_probs=57.1
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCcc
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFT 195 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~d 195 (469)
....+|.|.|| |.+|+-++.+..+.|++|++++.+.+.... .-.-+++.+|..|.+.+.++...+++|
T Consensus 9 ~~~~kigIlGg-GQL~rMla~aA~~lG~~v~v~d~~~~~PA~-----------~va~~~i~~~~~d~~~l~~~~~~~~~D 76 (111)
T d1kjqa2 9 PAATRVMLLGS-GELGKEVAIECQRLGVEVIAVDRYADAPAM-----------HVAHRSHVINMLDGDALRRVVELEKPH 76 (111)
T ss_dssp TTCCEEEEESC-SHHHHHHHHHHHTTTCEEEEEESSTTCGGG-----------GGSSEEEECCTTCHHHHHHHHHHHCCS
T ss_pred CCCCEEEEEeC-CHHHHHHHHHHHHCCCEEEEEcCCCCCchh-----------hcCCeEEECCCCCHHHHHHHHHhhCCc
Confidence 56678999995 999999999999999999999975441110 012367889999999999988766669
Q ss_pred EEEEc
Q 012176 196 HVLHL 200 (469)
Q Consensus 196 ~Vih~ 200 (469)
+|-.-
T Consensus 77 viT~E 81 (111)
T d1kjqa2 77 YIVPE 81 (111)
T ss_dssp EEEEC
T ss_pred eEEEE
Confidence 98653
|
| >d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO) species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=97.37 E-value=4.4e-05 Score=65.91 Aligned_cols=35 Identities=23% Similarity=0.303 Sum_probs=32.5
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCC
Q 012176 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNS 153 (469)
Q Consensus 119 ~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~ 153 (469)
|||.|+||+|.+|+.|++.|++.||+|++.+|+++
T Consensus 1 Mki~vigGaG~iG~alA~~la~~G~~V~l~~R~~e 35 (212)
T d1jaya_ 1 MRVALLGGTGNLGKGLALRLATLGHEIVVGSRREE 35 (212)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSHH
T ss_pred CEEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCHH
Confidence 78999999999999999999999999999999543
|
| >d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=97.35 E-value=0.00069 Score=55.68 Aligned_cols=110 Identities=20% Similarity=0.153 Sum_probs=73.2
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCC--CcEEEEeCCCCCCChhHHHHH-HHhh-----ccCCeEEEEecCCCHHHHHHhhc
Q 012176 119 MTVLVTGAAGFVGSHCSLALKKRG--DGVLGLDNFNSYYDPSLKRAR-QKLL-----QKHQVFIVEGDLNDAPLLTKLFD 190 (469)
Q Consensus 119 ~~VlVtGatG~IG~~l~~~L~~~G--~~V~~~~r~~~~~~~~~~~~~-~~~~-----~~~~v~~v~~Dl~d~~~l~~~~~ 190 (469)
|||.|+|+ |.+|..++-.|+.+| .++.++|++++ +.+.. ..+. ......+...+ |. +.++
T Consensus 1 MKI~IIGa-G~VG~~~a~~l~~~~~~~elvL~Di~~~-----~~~g~alDl~~~~~~~~~~~~i~~~~--d~----~~~~ 68 (142)
T d1ojua1 1 MKLGFVGA-GRVGSTSAFTCLLNLDVDEIALVDIAED-----LAVGEAMDLAHAAAGIDKYPKIVGGA--DY----SLLK 68 (142)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHSCCSEEEEECSSHH-----HHHHHHHHHHHHHHTTTCCCEEEEES--CG----GGGT
T ss_pred CEEEEECc-CHHHHHHHHHHHhcCcCceEEEEecccc-----hhhHHHHHHhhhccccCCCCccccCC--CH----HHhc
Confidence 78999996 999999999999887 47999987432 11111 1111 11122333221 22 2566
Q ss_pred cCCccEEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEc
Q 012176 191 VVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWAS 244 (469)
Q Consensus 191 ~~~~d~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~S 244 (469)
++ |+||-.||.. +....+..+....|..-...+.+.+++.+....++.+|
T Consensus 69 ~a--diVvitag~~--~~~g~~r~~l~~~n~~i~~~i~~~i~~~~p~aivivvt 118 (142)
T d1ojua1 69 GS--EIIVVTAGLA--RKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVT 118 (142)
T ss_dssp TC--SEEEECCCCC--CCSSCCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECS
T ss_pred cc--cEEEEecccc--CCCCCchHHHHHHhhHHHHHHHHHHHhhCCCcEEEEec
Confidence 67 9999999862 22334566788899999999999999988774555554
|
| >d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.34 E-value=0.00033 Score=58.54 Aligned_cols=118 Identities=14% Similarity=0.033 Sum_probs=69.7
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCC-----C--cEEEEeCCCCCCChhHHHHHHHh--hccCCeEEEEecCCCHHHHHH
Q 012176 117 NGMTVLVTGAAGFVGSHCSLALKKRG-----D--GVLGLDNFNSYYDPSLKRARQKL--LQKHQVFIVEGDLNDAPLLTK 187 (469)
Q Consensus 117 ~~~~VlVtGatG~IG~~l~~~L~~~G-----~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~v~~v~~Dl~d~~~l~~ 187 (469)
+.++|.|+||+|.+|++++-.|+..+ . +++..+.... ........... ........+..-- ...+
T Consensus 2 ~p~KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L~l~d~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~----~~~~ 75 (154)
T d5mdha1 2 EPIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPM--MGVLDGVLMELQDCALPLLKDVIATD----KEEI 75 (154)
T ss_dssp CCEEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGG--HHHHHHHHHHHHHTCCTTEEEEEEES----CHHH
T ss_pred CceEEEEECCCCHHHHHHHHHHHHHHhcCCCCccEEEEecCccc--hhhhhhhhhhhcccccccccccccCc----cccc
Confidence 35799999999999999999998653 1 3444443211 01111111111 1122333333211 2345
Q ss_pred hhccCCccEEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhc-CCCCeEEEEc
Q 012176 188 LFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSV-NPQPSIVWAS 244 (469)
Q Consensus 188 ~~~~~~~d~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~-~~~~~~V~~S 244 (469)
.++++ |+||-++|... -...+..+.++.|..-.+.+.+.+.+. +....+|.+|
T Consensus 76 ~~~~~--dvVVitag~~~--~~g~sr~dll~~N~~i~k~~~~~i~k~a~~~~~iivvs 129 (154)
T d5mdha1 76 AFKDL--DVAILVGSMPR--RDGMERKDLLKANVKIFKCQGAALDKYAKKSVKVIVVG 129 (154)
T ss_dssp HTTTC--SEEEECCSCCC--CTTCCTTTTHHHHHHHHHHHHHHHHHHSCTTCEEEECS
T ss_pred ccCCc--eEEEEecccCC--CCCCchhHHHHHhHHHHHHHHHHHHhhCCCceEEEEec
Confidence 67778 99999998733 223445567889999999999988765 4332345555
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.33 E-value=0.00036 Score=59.75 Aligned_cols=78 Identities=24% Similarity=0.246 Sum_probs=54.1
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHH---HHHHhhccC
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAP---LLTKLFDVV 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~---~l~~~~~~~ 192 (469)
..+.+|||+||+|.+|...++.+...|.+|++++++++ +.+.+...+...+ .|..+++ .+.+...+.
T Consensus 24 ~~g~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~~~~---------~~~~l~~~Ga~~v-i~~~~~~~~~~v~~~t~~~ 93 (183)
T d1pqwa_ 24 SPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDA---------KREMLSRLGVEYV-GDSRSVDFADEILELTDGY 93 (183)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHH---------HHHHHHTTCCSEE-EETTCSTHHHHHHHHTTTC
T ss_pred CCCCEEEEECCCCCcccccchhhccccccceeeecccc---------ccccccccccccc-ccCCccCHHHHHHHHhCCC
Confidence 35679999999999999999999999999999987321 2222333344333 2444543 344444455
Q ss_pred CccEEEEcccc
Q 012176 193 PFTHVLHLAAQ 203 (469)
Q Consensus 193 ~~d~Vih~Aa~ 203 (469)
++|+||++.|.
T Consensus 94 g~d~v~d~~g~ 104 (183)
T d1pqwa_ 94 GVDVVLNSLAG 104 (183)
T ss_dssp CEEEEEECCCT
T ss_pred CEEEEEecccc
Confidence 78999999974
|
| >d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Rck domain from putative potassium channel Kch species: Escherichia coli [TaxId: 562]
Probab=97.30 E-value=0.0017 Score=53.70 Aligned_cols=75 Identities=23% Similarity=0.301 Sum_probs=56.8
Q ss_pred EEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhh-ccCCccEEE
Q 012176 120 TVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLF-DVVPFTHVL 198 (469)
Q Consensus 120 ~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~-~~~~~d~Vi 198 (469)
+|+|+|. |-+|..+++.|.+.|++|++++..++ ............++.++.||.+|++.++++- +.+ |.||
T Consensus 5 HiII~G~-g~~g~~l~~~L~~~~~~v~vId~d~~-----~~~~~~~~~~~~~~~vi~Gd~~d~~~L~~a~i~~a--~~vi 76 (153)
T d1id1a_ 5 HFIVCGH-SILAINTILQLNQRGQNVTVISNLPE-----DDIKQLEQRLGDNADVIPGDSNDSSVLKKAGIDRC--RAIL 76 (153)
T ss_dssp CEEEECC-SHHHHHHHHHHHHTTCCEEEEECCCH-----HHHHHHHHHHCTTCEEEESCTTSHHHHHHHTTTTC--SEEE
T ss_pred EEEEECC-CHHHHHHHHHHHHcCCCEEEEeccch-----hHHHHHHHhhcCCcEEEEccCcchHHHHHhccccC--CEEE
Confidence 6899997 99999999999999999999987432 1222222233458999999999999987654 444 8888
Q ss_pred Eccc
Q 012176 199 HLAA 202 (469)
Q Consensus 199 h~Aa 202 (469)
-+..
T Consensus 77 ~~~~ 80 (153)
T d1id1a_ 77 ALSD 80 (153)
T ss_dssp ECSS
T ss_pred Eccc
Confidence 7754
|
| >d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: B. subtilis YhfP homologue species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.29 E-value=0.00019 Score=61.44 Aligned_cols=78 Identities=24% Similarity=0.224 Sum_probs=49.3
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCC-HHHHHHhhccCCc
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLND-APLLTKLFDVVPF 194 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d-~~~l~~~~~~~~~ 194 (469)
.++.+|||+||+|.+|...++.+...|.+|+++.++++. .... ..+.. . .++ |-.+ .++..+...+.++
T Consensus 30 ~~g~~VLI~gaaGGVG~~aiQlak~~Ga~Viat~~s~~k----~~~~--~~lGa-~-~vi--~~~~~~~~~~~~~~~~gv 99 (176)
T d1xa0a2 30 PERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAE----HDYL--RVLGA-K-EVL--AREDVMAERIRPLDKQRW 99 (176)
T ss_dssp GGGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTC----HHHH--HHTTC-S-EEE--ECC---------CCSCCE
T ss_pred CCCCEEEEEeccchHHHHHHHHHHHcCCceEEecCchHH----HHHH--Hhccc-c-eee--ecchhHHHHHHHhhccCc
Confidence 456789999999999999999999999999999986541 1111 11111 1 122 2221 1223334455578
Q ss_pred cEEEEcccc
Q 012176 195 THVLHLAAQ 203 (469)
Q Consensus 195 d~Vih~Aa~ 203 (469)
|+||++.|.
T Consensus 100 D~vid~vgg 108 (176)
T d1xa0a2 100 AAAVDPVGG 108 (176)
T ss_dssp EEEEECSTT
T ss_pred CEEEEcCCc
Confidence 999999986
|
| >d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH species: Lactobacillus confusus [TaxId: 1583]
Probab=97.25 E-value=0.00064 Score=56.18 Aligned_cols=112 Identities=14% Similarity=0.071 Sum_probs=71.3
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCC--CcEEEEeCCCCCCChhHHHHHHHhh-----ccCCeEEEEecCCCHHHHHHhhcc
Q 012176 119 MTVLVTGAAGFVGSHCSLALKKRG--DGVLGLDNFNSYYDPSLKRARQKLL-----QKHQVFIVEGDLNDAPLLTKLFDV 191 (469)
Q Consensus 119 ~~VlVtGatG~IG~~l~~~L~~~G--~~V~~~~r~~~~~~~~~~~~~~~~~-----~~~~v~~v~~Dl~d~~~l~~~~~~ 191 (469)
|||.|+|+ |++|..++-.|+.+| .++.++++++.. .+.....+. ......+..+| . +.+++
T Consensus 2 kKI~IIGa-G~VG~~~a~~l~~~~~~~elvL~Di~~~~----~~g~~~Dl~~a~~~~~~~~~~~~~d---~----~~l~~ 69 (146)
T d1hyha1 2 RKIGIIGL-GNVGAAVAHGLIAQGVADDYVFIDANEAK----VKADQIDFQDAMANLEAHGNIVIND---W----AALAD 69 (146)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHH----HHHHHHHHHHHGGGSSSCCEEEESC---G----GGGTT
T ss_pred CeEEEECc-CHHHHHHHHHHHhcCCCceEEEEecccch----hhhHHHhhhccccccCCccceeccC---H----HHhcc
Confidence 68999995 999999999999887 489998874321 111111111 11234444444 2 23566
Q ss_pred CCccEEEEcccccChhh--hccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEc
Q 012176 192 VPFTHVLHLAAQAGVRY--AMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWAS 244 (469)
Q Consensus 192 ~~~d~Vih~Aa~~~~~~--~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~S 244 (469)
+ |+||-+||...... ...+..+....|+.-.+.+.+..++.+....+|.+|
T Consensus 70 a--diVVitaG~~~~~~~~~g~~R~~l~~~N~~i~~~i~~~i~~~~p~aivivvt 122 (146)
T d1hyha1 70 A--DVVISTLGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESGFHGVLVVIS 122 (146)
T ss_dssp C--SEEEECCSCGGGTC-------CTTHHHHHHHHHHHHHHHHHTTCCSEEEECS
T ss_pred c--cEEEEeccccccccccCCccHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEec
Confidence 7 99999998632110 011223467789999999999999988775666555
|
| >d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.24 E-value=0.00035 Score=58.64 Aligned_cols=113 Identities=17% Similarity=0.172 Sum_probs=74.1
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCC--cEEEEeCCCCCCChhHHHHHHHhh-----ccCCeEEEEecCCCHHHHHHh
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGD--GVLGLDNFNSYYDPSLKRARQKLL-----QKHQVFIVEGDLNDAPLLTKL 188 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~-----~~~~v~~v~~Dl~d~~~l~~~ 188 (469)
.+..+|.|+|+ |.+|..++..|...|. ++.++|+..+ ..+.....+. ..........| . +.
T Consensus 17 ~~~~KI~IIGa-G~VG~~~A~~l~~~~l~~elvL~D~~~~----~a~g~alDl~~~~~~~~~~~~~~~~d---~----~~ 84 (159)
T d2ldxa1 17 LSRCKITVVGV-GDVGMACAISILLKGLADELALVDADTD----KLRGEALDLQHGSLFLSTPKIVFGKD---Y----NV 84 (159)
T ss_dssp CCCCEEEEECC-SHHHHHHHHHHHTTTSCSEEEEECSCHH----HHHHHHHHHHHTTTTCSCCEEEEESS---G----GG
T ss_pred CCCCeEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCch----hhhccHHHHhCcchhcCCCeEEeccc---h----hh
Confidence 45568999996 9999999999999874 8999987432 1111111111 11122233333 2 23
Q ss_pred hccCCccEEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEc
Q 012176 189 FDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWAS 244 (469)
Q Consensus 189 ~~~~~~d~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~S 244 (469)
++++ |+||-.||.... ...+..+.++.|+.-.+.++...++.+....++.+|
T Consensus 85 ~~~a--divvitag~~~~--~~~~R~dll~~N~~i~~~i~~~i~~~~p~~ivivvt 136 (159)
T d2ldxa1 85 SANS--KLVIITAGARMV--SGQTRLDLLQRNVAIMKAIVPGVIQNSPDCKIIVVT 136 (159)
T ss_dssp GTTE--EEEEECCSCCCC--TTTCSSCTTHHHHHHHHHHTTTHHHHSTTCEEEECS
T ss_pred hccc--cEEEEecccccC--CCCCHHHHHHHHHHHHHHHHHHHhccCCCeEEEEeC
Confidence 4566 999999987332 224444667889999999999988888875666666
|
| >d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=97.14 E-value=0.00046 Score=56.99 Aligned_cols=97 Identities=11% Similarity=-0.026 Sum_probs=56.8
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHCC----CcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCC
Q 012176 118 GMTVLVTGAAGFVGSHCSLALKKRG----DGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVP 193 (469)
Q Consensus 118 ~~~VlVtGatG~IG~~l~~~L~~~G----~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~ 193 (469)
+|+|.|.||||++|+.+++.|+++. .+++.+......... .... .-.....++.+.+. ++++
T Consensus 1 MkkVaIvGATG~VGqeli~~Ll~~~~~p~~~l~~~~ss~s~g~~-------~~~~--~~~~~~~~~~~~~~----~~~~- 66 (146)
T d1t4ba1 1 MQNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLGQAA-------PSFG--GTTGTLQDAFDLEA----LKAL- 66 (146)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSSTTSBC-------CGGG--TCCCBCEETTCHHH----HHTC-
T ss_pred CcEEEEECCccHHHHHHHHHHHhCCCCCeeEEEEeecccccccc-------cccc--CCceeeecccchhh----hhcC-
Confidence 4689999999999999999988863 256666553321110 0011 11112223344333 4556
Q ss_pred ccEEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcCcccc
Q 012176 194 FTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVY 249 (469)
Q Consensus 194 ~d~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS~~vy 249 (469)
|+||.+++. .-...+...+.+.|.+ .+.++.++.|
T Consensus 67 -DivF~a~~~------------------~~s~~~~~~~~~~g~~--~~VID~Ss~f 101 (146)
T d1t4ba1 67 -DIIVTCQGG------------------DYTNEIYPKLRESGWQ--GYWIDAASSL 101 (146)
T ss_dssp -SEEEECSCH------------------HHHHHHHHHHHHTTCC--CEEEECSSTT
T ss_pred -cEEEEecCc------------------hHHHHhhHHHHhcCCC--eecccCCccc
Confidence 999998854 1245566666677763 4455555555
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=97.12 E-value=0.0013 Score=55.39 Aligned_cols=79 Identities=22% Similarity=0.105 Sum_probs=49.4
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecC--CCHHHHHHhhc---
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDL--NDAPLLTKLFD--- 190 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl--~d~~~l~~~~~--- 190 (469)
..+.+|+|+| +|.||...++.+...|.+|+++++++. .. .....+. ... .+..|- .+.+.+.+.+.
T Consensus 25 ~~g~~vlV~G-~G~vG~~~~~~ak~~Ga~vi~v~~~~~-----r~-~~a~~~g-a~~-~~~~~~~~~~~~~~~~~~~~~~ 95 (170)
T d1e3ja2 25 QLGTTVLVIG-AGPIGLVSVLAAKAYGAFVVCTARSPR-----RL-EVAKNCG-ADV-TLVVDPAKEEESSIIERIRSAI 95 (170)
T ss_dssp CTTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEEESCHH-----HH-HHHHHTT-CSE-EEECCTTTSCHHHHHHHHHHHS
T ss_pred CCCCEEEEEc-ccccchhhHhhHhhhcccccccchHHH-----HH-HHHHHcC-CcE-EEeccccccccchhhhhhhccc
Confidence 4567899998 599999999999999999999998432 11 1111111 122 222222 33344433333
Q ss_pred cCCccEEEEcccc
Q 012176 191 VVPFTHVLHLAAQ 203 (469)
Q Consensus 191 ~~~~d~Vih~Aa~ 203 (469)
+.++|+||+++|.
T Consensus 96 g~g~D~vid~~g~ 108 (170)
T d1e3ja2 96 GDLPNVTIDCSGN 108 (170)
T ss_dssp SSCCSEEEECSCC
T ss_pred ccCCceeeecCCC
Confidence 3467999999975
|
| >d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=97.09 E-value=0.002 Score=53.27 Aligned_cols=114 Identities=11% Similarity=0.089 Sum_probs=73.6
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHCC-CcEEEEeCCCCCCChhHHHHHHHh-----hccCCeEEEEecCCCHHHHHHhhcc
Q 012176 118 GMTVLVTGAAGFVGSHCSLALKKRG-DGVLGLDNFNSYYDPSLKRARQKL-----LQKHQVFIVEGDLNDAPLLTKLFDV 191 (469)
Q Consensus 118 ~~~VlVtGatG~IG~~l~~~L~~~G-~~V~~~~r~~~~~~~~~~~~~~~~-----~~~~~v~~v~~Dl~d~~~l~~~~~~ 191 (469)
++||.|+|+ |.+|..++..|..++ .++.++|+.++. .+...... .......+...+ +. +.+++
T Consensus 3 ~~KI~IIGa-G~VG~~~a~~l~~~~l~el~L~Di~~~~----~~g~a~Dl~~~~~~~~~~~~v~~~~--~~----~~~~~ 71 (150)
T d1t2da1 3 KAKIVLVGS-GMIGGVMATLIVQKNLGDVVLFDIVKNM----PHGKALDTSHTNVMAYSNCKVSGSN--TY----DDLAG 71 (150)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECSSSSH----HHHHHHHHHTHHHHHTCCCCEEEEC--CG----GGGTT
T ss_pred CCeEEEECC-CHHHHHHHHHHHhCCCCeEEEEeccCCc----ceeeecchhhhccccCCCcEEEecc--cc----cccCC
Confidence 358999996 999999998887776 478888875531 11111111 112233343322 22 34566
Q ss_pred CCccEEEEcccccChhh---hccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEc
Q 012176 192 VPFTHVLHLAAQAGVRY---AMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWAS 244 (469)
Q Consensus 192 ~~~d~Vih~Aa~~~~~~---~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~S 244 (469)
+ |+||-++|.....- ...+..+.+..|..-.+.+++.+++.+....++.+|
T Consensus 72 a--dvvvitag~~~~~g~~~~~~~R~~l~~~N~~iv~~i~~~i~~~~p~aivivvt 125 (150)
T d1t2da1 72 A--DVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIVVT 125 (150)
T ss_dssp C--SEEEECCSCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECS
T ss_pred C--cEEEEecccccCCCCCccccchhHHHHHHHHHHHHHHHHHHhcCCCeEEEEec
Confidence 6 99999999633211 112355678999999999999999998774556555
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.06 E-value=0.001 Score=56.51 Aligned_cols=78 Identities=22% Similarity=0.272 Sum_probs=53.3
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHH---HHhhccC
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLL---TKLFDVV 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l---~~~~~~~ 192 (469)
..+.+|||+||+|.+|...++.+...|.+|++++++++ +.+....-+...+ .|..+.+.. .+...+.
T Consensus 27 ~~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~~---------~~~~~~~~Ga~~v-i~~~~~~~~~~i~~~t~~~ 96 (174)
T d1yb5a2 27 KAGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEE---------GQKIVLQNGAHEV-FNHREVNYIDKIKKYVGEK 96 (174)
T ss_dssp CTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHH---------HHHHHHHTTCSEE-EETTSTTHHHHHHHHHCTT
T ss_pred CCCCEEEEEeccccccccccccccccCccccccccccc---------ccccccccCcccc-cccccccHHHHhhhhhccC
Confidence 46779999999999999999999999999999987321 1111112233222 255555443 3444555
Q ss_pred CccEEEEcccc
Q 012176 193 PFTHVLHLAAQ 203 (469)
Q Consensus 193 ~~d~Vih~Aa~ 203 (469)
++|+|+++.|.
T Consensus 97 g~d~v~d~~g~ 107 (174)
T d1yb5a2 97 GIDIIIEMLAN 107 (174)
T ss_dssp CEEEEEESCHH
T ss_pred CceEEeecccH
Confidence 78999999874
|
| >d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Siroheme synthase CysG, domain 1 species: Salmonella typhimurium [TaxId: 90371]
Probab=97.06 E-value=0.0031 Score=49.35 Aligned_cols=95 Identities=13% Similarity=0.048 Sum_probs=66.1
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCcc
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFT 195 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~d 195 (469)
.++++|+|+|+ |-+|..-++.|++.|.+|++++.... ..........++.+...+..+. -++++ +
T Consensus 10 l~~k~vlVvG~-G~va~~ka~~ll~~ga~v~v~~~~~~-------~~~~~~~~~~~i~~~~~~~~~~-----dl~~~--~ 74 (113)
T d1pjqa1 10 LRDRDCLIVGG-GDVAERKARLLLEAGARLTVNALTFI-------PQFTVWANEGMLTLVEGPFDET-----LLDSC--W 74 (113)
T ss_dssp CBTCEEEEECC-SHHHHHHHHHHHHTTBEEEEEESSCC-------HHHHHHHTTTSCEEEESSCCGG-----GGTTC--S
T ss_pred eCCCEEEEECC-CHHHHHHHHHHHHCCCeEEEEeccCC-------hHHHHHHhcCCceeeccCCCHH-----HhCCC--c
Confidence 57899999996 99999999999999999999986433 2233333455788888766542 24455 7
Q ss_pred EEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcC
Q 012176 196 HVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASS 245 (469)
Q Consensus 196 ~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS 245 (469)
.|+-+.+. -.-...+.+.|++.++ +|++..
T Consensus 75 lv~~at~d-----------------~~~n~~i~~~a~~~~i---lVNv~D 104 (113)
T d1pjqa1 75 LAIAATDD-----------------DTVNQRVSDAAESRRI---FCNVVD 104 (113)
T ss_dssp EEEECCSC-----------------HHHHHHHHHHHHHTTC---EEEETT
T ss_pred EEeecCCC-----------------HHHHHHHHHHHHHcCC---EEEeCC
Confidence 77765432 1123467788888874 677653
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=97.04 E-value=0.00092 Score=56.92 Aligned_cols=76 Identities=16% Similarity=0.041 Sum_probs=48.0
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHh---hccCCeEEEEecCCCHHHHHHhhccCCcc
Q 012176 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKL---LQKHQVFIVEGDLNDAPLLTKLFDVVPFT 195 (469)
Q Consensus 119 ~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~---~~~~~v~~v~~Dl~d~~~l~~~~~~~~~d 195 (469)
|+|.|+|| |.+|..++..|.++||+|++++|.++ ......... ...+.............++.++++++ |
T Consensus 2 k~iaIiGa-G~~G~~~A~~l~~~G~~V~~~~r~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~a--D 74 (184)
T d1bg6a2 2 KTYAVLGL-GNGGHAFAAYLALKGQSVLAWDIDAQ----RIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDA--D 74 (184)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCHH----HHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTTC--S
T ss_pred CEEEEECc-cHHHHHHHHHHHHCCCEEEEEECCHH----HHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhHhcCC--C
Confidence 78999997 99999999999999999999999432 111211111 01111111211111122356777877 9
Q ss_pred EEEEcc
Q 012176 196 HVLHLA 201 (469)
Q Consensus 196 ~Vih~A 201 (469)
+||-+.
T Consensus 75 ~iii~v 80 (184)
T d1bg6a2 75 VILIVV 80 (184)
T ss_dssp EEEECS
T ss_pred EEEEEE
Confidence 999875
|
| >d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chloroflexus aurantiacus [TaxId: 1108]
Probab=97.04 E-value=0.00042 Score=57.07 Aligned_cols=110 Identities=14% Similarity=0.147 Sum_probs=68.0
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCC-cEEEEeCCCCCCChhHHHHHHHh-----hccCCeEEE-EecCCCHHHHHHhhcc
Q 012176 119 MTVLVTGAAGFVGSHCSLALKKRGD-GVLGLDNFNSYYDPSLKRARQKL-----LQKHQVFIV-EGDLNDAPLLTKLFDV 191 (469)
Q Consensus 119 ~~VlVtGatG~IG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~-----~~~~~v~~v-~~Dl~d~~~l~~~~~~ 191 (469)
+||.|+|+ |.+|..++-.|+.++. ++.+++..++. ........ .......+. ..| .+ .+++
T Consensus 2 ~KI~IIGa-G~VG~~~A~~l~~~~l~dl~l~D~~~~~----~~~~~~Dl~~~~~~~~~~~~i~~~~d---~~----~~~~ 69 (142)
T d1uxja1 2 KKISIIGA-GFVGSTTAHWLAAKELGDIVLLDIVEGV----PQGKALDLYEASPIEGFDVRVTGTNN---YA----DTAN 69 (142)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCSEEEEECSSSSH----HHHHHHHHHTTHHHHTCCCCEEEESC---GG----GGTT
T ss_pred CeEEEECC-CHHHHHHHHHHHhCCcceEEEEeecccc----chhHHHHhhccccccCCCCEEEecCc---HH----HhcC
Confidence 58999996 9999999999888764 88888875531 11111111 111223333 223 22 2455
Q ss_pred CCccEEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEc
Q 012176 192 VPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWAS 244 (469)
Q Consensus 192 ~~~d~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~S 244 (469)
+ |+||-+||... -...+..+.+..|..-.+.++....+.+....++.+|
T Consensus 70 a--dvvvitag~~~--~~~~~r~dl~~~N~~i~~~i~~~i~k~~p~aivivvt 118 (142)
T d1uxja1 70 S--DVIVVTSGAPR--KPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVN 118 (142)
T ss_dssp C--SEEEECCSCC-----------CHHHHHHHHHHHHHHHGGGCTTCEEEECS
T ss_pred C--CEEEEeeeccC--CcCcchhHHHhHHHHHHHHHHHHHhccCCCceEEEeC
Confidence 6 99999998632 1223445667889999999999999988774555544
|
| >d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Haemophilus influenzae [TaxId: 727]
Probab=97.00 E-value=0.002 Score=53.17 Aligned_cols=37 Identities=19% Similarity=0.254 Sum_probs=33.8
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCC
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFN 152 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~ 152 (469)
...++|.|+||.|.+|+.+++.|.+.||+|++.+|..
T Consensus 7 ~~~~kI~iIGg~G~mG~~la~~L~~~G~~V~~~d~~~ 43 (152)
T d2pv7a2 7 SDIHKIVIVGGYGKLGGLFARYLRASGYPISILDRED 43 (152)
T ss_dssp TTCCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTC
T ss_pred CCCCeEEEEcCCCHHHHHHHHHHHHcCCCcEeccccc
Confidence 4567999999999999999999999999999999844
|
| >d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Usg-1 protein homolog PA3116 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.85 E-value=0.0014 Score=53.91 Aligned_cols=33 Identities=30% Similarity=0.275 Sum_probs=27.4
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHCCC---cEEEEeC
Q 012176 118 GMTVLVTGAAGFVGSHCSLALKKRGD---GVLGLDN 150 (469)
Q Consensus 118 ~~~VlVtGatG~IG~~l~~~L~~~G~---~V~~~~r 150 (469)
.|+|.|.||||++|+.+++.|.+++| ++..+..
T Consensus 2 ~mnVaIvGATGyvG~eli~lL~~~~hP~~~l~~~~s 37 (144)
T d2hjsa1 2 PLNVAVVGATGSVGEALVGLLDERDFPLHRLHLLAS 37 (144)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEEC
T ss_pred CCEEEEECCCCHHHHHHHHHHHhcCCCceEEEEEee
Confidence 47899999999999999999987654 6666543
|
| >d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Putative shikimate dehydrogenase YdiB species: Escherichia coli [TaxId: 562]
Probab=96.84 E-value=0.0032 Score=53.75 Aligned_cols=84 Identities=14% Similarity=0.189 Sum_probs=62.7
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCC-cEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCc
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGD-GVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPF 194 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~ 194 (469)
.++++|+|.|+ |..|+.++..|.+.|. +++++.|..+..+.... ...+............|+.+.+.+...+...
T Consensus 16 l~~k~vlIlGa-GGaarai~~al~~~g~~~i~i~nR~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 91 (182)
T d1vi2a1 16 IKGKTMVLLGA-GGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALA-FAQRVNENTDCVVTVTDLADQQAFAEALASA-- 91 (182)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHH-HHHHHHHHSSCEEEEEETTCHHHHHHHHHTC--
T ss_pred cCCCEEEEECC-cHHHHHHHHHHhhcCCceEeeeccchHHHHHHHH-HHHHHHhhcCcceEeeecccccchhhhhccc--
Confidence 57899999997 8999999999999986 78888987654433221 1222223335556778999999998888877
Q ss_pred cEEEEcccc
Q 012176 195 THVLHLAAQ 203 (469)
Q Consensus 195 d~Vih~Aa~ 203 (469)
|+|||+...
T Consensus 92 diiIN~Tp~ 100 (182)
T d1vi2a1 92 DILTNGTKV 100 (182)
T ss_dssp SEEEECSST
T ss_pred ceeccccCC
Confidence 999999753
|
| >d1u7za_ c.72.3.1 (A:) Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribokinase-like superfamily: CoaB-like family: CoaB-like domain: Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB) species: Escherichia coli [TaxId: 562]
Probab=96.74 E-value=0.0028 Score=56.10 Aligned_cols=76 Identities=20% Similarity=0.118 Sum_probs=52.5
Q ss_pred CCCCEEEEEc----------------CCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecC
Q 012176 116 PNGMTVLVTG----------------AAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDL 179 (469)
Q Consensus 116 ~~~~~VlVtG----------------atG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl 179 (469)
.++|+||||+ .||-.|.+|++++.++|++|+++.-..... ...++..+..
T Consensus 4 l~g~~vlITaG~T~E~ID~VR~ItN~SSGk~G~aiA~~~~~~Ga~V~li~g~~~~~------------~p~~~~~~~~-- 69 (223)
T d1u7za_ 4 LKHLNIMITAGPTREPLDPVRYISDHSSGKMGFAIAAAAARRGANVTLVSGPVSLP------------TPPFVKRVDV-- 69 (223)
T ss_dssp TTTCEEEEEESBCEEESSSSEEEEECCCSHHHHHHHHHHHHTTCEEEEEECSCCCC------------CCTTEEEEEC--
T ss_pred cCCCEEEEECCCCcccCCCcceeccCCcHHHHHHHHHHHHHcCCchhhhhcccccC------------ccccccccee--
Confidence 5677888875 478999999999999999999997633211 1225555543
Q ss_pred CCHHH----HHHhhccCCccEEEEcccccChh
Q 012176 180 NDAPL----LTKLFDVVPFTHVLHLAAQAGVR 207 (469)
Q Consensus 180 ~d~~~----l~~~~~~~~~d~Vih~Aa~~~~~ 207 (469)
...++ +.+.+..+ |++|++|+.....
T Consensus 70 ~t~~~m~~~~~~~~~~~--D~~i~aAAvsDf~ 99 (223)
T d1u7za_ 70 MTALEMEAAVNASVQQQ--NIFIGCAAVADYR 99 (223)
T ss_dssp CSHHHHHHHHHHHGGGC--SEEEECCBCCSEE
T ss_pred hhhHHHHHHHHhhhccc--eeEeeeechhhhh
Confidence 33333 33444555 9999999986653
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=96.74 E-value=0.0018 Score=55.06 Aligned_cols=78 Identities=18% Similarity=0.109 Sum_probs=53.7
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHH---HHHhhccC
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPL---LTKLFDVV 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~---l~~~~~~~ 192 (469)
..+.+|+|+||+|.+|..+++.+...|.+|++++++++ +......+ +...+ .|..+++. +.++-.+.
T Consensus 27 ~~g~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~s~~------k~~~~~~l---Ga~~v-i~~~~~d~~~~v~~~t~g~ 96 (179)
T d1qora2 27 KPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQ------KAQSALKA---GAWQV-INYREEDLVERLKEITGGK 96 (179)
T ss_dssp CTTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHH------HHHHHHHH---TCSEE-EETTTSCHHHHHHHHTTTC
T ss_pred CCCCEEEEEccccccchHHHHHHHHhCCeEeecccchH------HHHHHHhc---CCeEE-EECCCCCHHHHHHHHhCCC
Confidence 35679999999999999999999999999999998432 11111111 32222 25555443 44444566
Q ss_pred CccEEEEcccc
Q 012176 193 PFTHVLHLAAQ 203 (469)
Q Consensus 193 ~~d~Vih~Aa~ 203 (469)
++|+|+++.+.
T Consensus 97 g~d~v~d~~g~ 107 (179)
T d1qora2 97 KVRVVYDSVGR 107 (179)
T ss_dssp CEEEEEECSCG
T ss_pred CeEEEEeCccH
Confidence 78999999975
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=96.73 E-value=0.00087 Score=56.84 Aligned_cols=75 Identities=19% Similarity=0.106 Sum_probs=50.1
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCcc
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFT 195 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~d 195 (469)
..+.+|+|+||+|.+|...++.+...|.+|++++++++. ....+. -+...+ .|..+. ..++-.+.++|
T Consensus 26 ~~g~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~~~----~~~~~~-----lGa~~~-i~~~~~--~~~~~~~~g~D 93 (171)
T d1iz0a2 26 RPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEK----LALPLA-----LGAEEA-ATYAEV--PERAKAWGGLD 93 (171)
T ss_dssp CTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGG----SHHHHH-----TTCSEE-EEGGGH--HHHHHHTTSEE
T ss_pred CCCCEEEEEeccccchhhhhhhhcccccccccccccccc----cccccc-----ccccee-eehhhh--hhhhhcccccc
Confidence 467899999999999999999999999999999985431 111111 132222 133332 23333344569
Q ss_pred EEEEccc
Q 012176 196 HVLHLAA 202 (469)
Q Consensus 196 ~Vih~Aa 202 (469)
+||++.|
T Consensus 94 ~v~d~~G 100 (171)
T d1iz0a2 94 LVLEVRG 100 (171)
T ss_dssp EEEECSC
T ss_pred ccccccc
Confidence 9999876
|
| >d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=96.71 E-value=0.0032 Score=49.97 Aligned_cols=60 Identities=13% Similarity=0.129 Sum_probs=45.6
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCC----ChhHHHHHHHhhccCCeEEEEe
Q 012176 117 NGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYY----DPSLKRARQKLLQKHQVFIVEG 177 (469)
Q Consensus 117 ~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~----~~~~~~~~~~~~~~~~v~~v~~ 177 (469)
..++|+|.|| |++|-.++..|.++|.+|+++.+.+... ++.......+.+...+++++..
T Consensus 29 ~~~~vvIIGg-G~iG~E~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~~~~~~l~~~GV~i~~~ 92 (121)
T d1d7ya2 29 PQSRLLIVGG-GVIGLELAATARTAGVHVSLVETQPRLMSRAAPATLADFVARYHAAQGVDLRFE 92 (121)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSSSTTTTTSCHHHHHHHHHHHHTTTCEEEES
T ss_pred cCCeEEEECc-chhHHHHHHHhhcccceEEEEeeccccccccCCHHHHHHHHHHHHHCCcEEEeC
Confidence 4578999996 9999999999999999999999987543 3333344445555667777654
|
| >d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=96.68 E-value=0.0038 Score=49.60 Aligned_cols=61 Identities=23% Similarity=0.410 Sum_probs=45.7
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCC----ChhHHHHHHHhhccCCeEEEEe
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYY----DPSLKRARQKLLQKHQVFIVEG 177 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~----~~~~~~~~~~~~~~~~v~~v~~ 177 (469)
...++|+|.|| |++|-.++..|.+.|.+|+++.+.+... ++.........+...+++++.+
T Consensus 28 ~~~k~vvViGg-G~iG~E~A~~l~~~g~~Vtlie~~~~~l~~~~d~~~~~~~~~~l~~~gv~~~~~ 92 (123)
T d1nhpa2 28 PEVNNVVVIGS-GYIGIEAAEAFAKAGKKVTVIDILDRPLGVYLDKEFTDVLTEEMEANNITIATG 92 (123)
T ss_dssp TTCCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSSSTTTTTCCHHHHHHHHHHHHTTTEEEEES
T ss_pred cCCCEEEEECC-hHHHHHHHHHhhccceEEEEEEecCcccccccchhhHHHHHHHhhcCCeEEEeC
Confidence 45679999996 9999999999999999999999876432 3444444445555557776665
|
| >d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.67 E-value=0.0027 Score=49.99 Aligned_cols=59 Identities=22% Similarity=0.312 Sum_probs=43.7
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCC---ChhHHHHHHHhhccCCeEEEEe
Q 012176 118 GMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYY---DPSLKRARQKLLQKHQVFIVEG 177 (469)
Q Consensus 118 ~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~---~~~~~~~~~~~~~~~~v~~v~~ 177 (469)
.++|+|.|| |++|-.++..|.+.|.+|+++.|.+.-. ++.......+.+...+++++.+
T Consensus 22 p~~v~IiGg-G~ig~E~A~~l~~~G~~Vtlve~~~~il~~~d~~~~~~l~~~l~~~GI~i~~~ 83 (117)
T d1ebda2 22 PKSLVVIGG-GYIGIELGTAYANFGTKVTILEGAGEILSGFEKQMAAIIKKRLKKKGVEVVTN 83 (117)
T ss_dssp CSEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSSSSSTTSCHHHHHHHHHHHHHTTCEEEES
T ss_pred CCeEEEECC-CccceeeeeeecccccEEEEEEecceecccccchhHHHHHHHHHhcCCEEEcC
Confidence 478999997 9999999999999999999999877532 3334444444455556665554
|
| >d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative zinc-binding alcohol dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.66 E-value=0.0032 Score=53.94 Aligned_cols=76 Identities=16% Similarity=0.036 Sum_probs=45.9
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCcEEE-EeCCCCCCChhHHHHHHHhhccCC-eEEEEecCCCHH---HHHHhhcc
Q 012176 117 NGMTVLVTGAAGFVGSHCSLALKKRGDGVLG-LDNFNSYYDPSLKRARQKLLQKHQ-VFIVEGDLNDAP---LLTKLFDV 191 (469)
Q Consensus 117 ~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~-~~r~~~~~~~~~~~~~~~~~~~~~-v~~v~~Dl~d~~---~l~~~~~~ 191 (469)
.+.+|||+||+|.+|...++.+...|.++++ ++... +.........+ -.++ |..+++ .++++. .
T Consensus 30 ~~etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~--------e~~~~l~~~~gad~vi--~~~~~~~~~~~~~~~-~ 98 (187)
T d1vj1a2 30 SNQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQ--------EKCLFLTSELGFDAAV--NYKTGNVAEQLREAC-P 98 (187)
T ss_dssp SCCEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSH--------HHHHHHHHHSCCSEEE--ETTSSCHHHHHHHHC-T
T ss_pred CCCEEEEECCCchhhHHHHHHHHHcCCcceecccchH--------HHHhhhhhcccceEEe--eccchhHHHHHHHHh-c
Confidence 4478999999999999999999989987554 44311 11111111112 2233 444332 233333 3
Q ss_pred CCccEEEEcccc
Q 012176 192 VPFTHVLHLAAQ 203 (469)
Q Consensus 192 ~~~d~Vih~Aa~ 203 (469)
.++|+||++.|.
T Consensus 99 ~GvDvv~D~vGg 110 (187)
T d1vj1a2 99 GGVDVYFDNVGG 110 (187)
T ss_dssp TCEEEEEESSCH
T ss_pred cCceEEEecCCc
Confidence 467999999974
|
| >d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: GDP-mannose 6-dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.63 E-value=0.0083 Score=51.94 Aligned_cols=32 Identities=38% Similarity=0.727 Sum_probs=29.7
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCC
Q 012176 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNF 151 (469)
Q Consensus 119 ~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~ 151 (469)
|+|.|.| .||+|..++..|++.|++|+++|.+
T Consensus 1 MkI~ViG-lG~vGl~~a~~la~~g~~V~g~D~n 32 (202)
T d1mv8a2 1 MRISIFG-LGYVGAVCAGCLSARGHEVIGVDVS 32 (202)
T ss_dssp CEEEEEC-CSTTHHHHHHHHHHTTCEEEEECSC
T ss_pred CEEEEEC-CCHhHHHHHHHHHhCCCcEEEEeCC
Confidence 7899998 5999999999999999999999974
|
| >d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Potassium channel-related protein MthK species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]
Probab=96.62 E-value=0.005 Score=49.21 Aligned_cols=69 Identities=22% Similarity=0.199 Sum_probs=50.4
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhh-ccCCccEE
Q 012176 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLF-DVVPFTHV 197 (469)
Q Consensus 119 ~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~-~~~~~d~V 197 (469)
|.|+|+|. |-+|+.+++.| +|++|.+++..+. .. ......++.++.||.+|++.|+++- +.+ +.|
T Consensus 1 kHivI~G~-g~~g~~l~~~L--~~~~i~vi~~d~~-----~~----~~~~~~~~~~i~Gd~~~~~~L~~a~i~~A--~~v 66 (129)
T d2fy8a1 1 RHVVICGW-SESTLECLREL--RGSEVFVLAEDEN-----VR----KKVLRSGANFVHGDPTRVSDLEKANVRGA--RAV 66 (129)
T ss_dssp CCEEEESC-CHHHHHHHHTS--CGGGEEEEESCTT-----HH----HHHHHTTCEEEESCTTSHHHHHHTTCTTC--SEE
T ss_pred CEEEEECC-CHHHHHHHHHH--cCCCCEEEEcchH-----HH----HHHHhcCccccccccCCHHHHHHhhhhcC--cEE
Confidence 46889986 88999999999 4678888887443 11 1222348999999999999888753 334 888
Q ss_pred EEcc
Q 012176 198 LHLA 201 (469)
Q Consensus 198 ih~A 201 (469)
|-+.
T Consensus 67 i~~~ 70 (129)
T d2fy8a1 67 IVNL 70 (129)
T ss_dssp EECC
T ss_pred EEec
Confidence 8654
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=96.62 E-value=0.0047 Score=52.52 Aligned_cols=78 Identities=17% Similarity=0.200 Sum_probs=49.7
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCC-cEEEEeCCCCCCChhHHHHHHHhhccCCe-EEEEecCCCHHH----HHHhh
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGD-GVLGLDNFNSYYDPSLKRARQKLLQKHQV-FIVEGDLNDAPL----LTKLF 189 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~v-~~v~~Dl~d~~~----l~~~~ 189 (469)
..+.+|||+|+ |.||...++.+...|. +|++++++++ +.+....-+. .++...-.+..+ +.+..
T Consensus 27 ~~G~~VlV~Ga-G~iG~~~~~~ak~~Ga~~Vi~~~~~~~---------~~~~a~~lGa~~vi~~~~~~~~~~~~~i~~~~ 96 (182)
T d1vj0a2 27 FAGKTVVIQGA-GPLGLFGVVIARSLGAENVIVIAGSPN---------RLKLAEEIGADLTLNRRETSVEERRKAIMDIT 96 (182)
T ss_dssp CBTCEEEEECC-SHHHHHHHHHHHHTTBSEEEEEESCHH---------HHHHHHHTTCSEEEETTTSCHHHHHHHHHHHT
T ss_pred CCCCEEEEECC-Cccchhheecccccccccccccccccc---------cccccccccceEEEeccccchHHHHHHHHHhh
Confidence 45789999997 9999999999999997 7999988432 1111111132 233222223222 33444
Q ss_pred ccCCccEEEEcccc
Q 012176 190 DVVPFTHVLHLAAQ 203 (469)
Q Consensus 190 ~~~~~d~Vih~Aa~ 203 (469)
.+.++|+||.+.|.
T Consensus 97 ~~~g~Dvvid~vG~ 110 (182)
T d1vj0a2 97 HGRGADFILEATGD 110 (182)
T ss_dssp TTSCEEEEEECSSC
T ss_pred CCCCceEEeecCCc
Confidence 45568999999976
|
| >d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhfP species: Bacillus subtilis [TaxId: 1423]
Probab=96.60 E-value=0.00031 Score=59.56 Aligned_cols=37 Identities=38% Similarity=0.407 Sum_probs=33.1
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCC
Q 012176 117 NGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNS 153 (469)
Q Consensus 117 ~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~ 153 (469)
.+.+|||+||+|.+|...++.....|.+|++++++++
T Consensus 23 ~~~~VLV~gaaGgVG~~avQlAk~~Ga~Viat~~s~~ 59 (167)
T d1tt7a2 23 EKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNRE 59 (167)
T ss_dssp GGCCEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSS
T ss_pred CCCEEEEeCCcchHHHHHHHHHHHcCCceEEEecCHH
Confidence 4557999999999999999999999999999998654
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=96.58 E-value=0.0038 Score=52.86 Aligned_cols=76 Identities=21% Similarity=0.232 Sum_probs=50.2
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCC-cEEEEeCCCCCCChhHHHHHHHhhccCCe-EEEEecCCC---HHHHHHhhc
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGD-GVLGLDNFNSYYDPSLKRARQKLLQKHQV-FIVEGDLND---APLLTKLFD 190 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~v-~~v~~Dl~d---~~~l~~~~~ 190 (469)
..+.+|+|.|+ |.||...++.+...|. +|+++++++. +....+.+ +. +++ |..+ .+.+.++..
T Consensus 26 ~~g~~VlI~Ga-G~vGl~~~q~ak~~Ga~~Vi~~d~~~~------r~~~a~~l---Ga~~~i--~~~~~~~~~~v~~~t~ 93 (174)
T d1jqba2 26 EMGSSVVVIGI-GAVGLMGIAGAKLRGAGRIIGVGSRPI------CVEAAKFY---GATDIL--NYKNGHIEDQVMKLTN 93 (174)
T ss_dssp CTTCCEEEECC-SHHHHHHHHHHHTTTCSCEEEECCCHH------HHHHHHHH---TCSEEE--CGGGSCHHHHHHHHTT
T ss_pred CCCCEEEEEcC-Ccchhhhhhhhhcccccccccccchhh------hHHHHHhh---Cccccc--cccchhHHHHHHHHhh
Confidence 45678999986 9999999999999997 6888887321 11111111 22 222 3322 344556655
Q ss_pred cCCccEEEEcccc
Q 012176 191 VVPFTHVLHLAAQ 203 (469)
Q Consensus 191 ~~~~d~Vih~Aa~ 203 (469)
+.++|+||.+.|.
T Consensus 94 g~G~D~vid~~g~ 106 (174)
T d1jqba2 94 GKGVDRVIMAGGG 106 (174)
T ss_dssp TSCEEEEEECSSC
T ss_pred ccCcceEEEccCC
Confidence 6678999999986
|
| >d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Probab=96.57 E-value=0.003 Score=49.84 Aligned_cols=59 Identities=17% Similarity=0.234 Sum_probs=44.2
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCC---ChhHHHHHHHhhccCCeEEEE
Q 012176 117 NGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYY---DPSLKRARQKLLQKHQVFIVE 176 (469)
Q Consensus 117 ~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~---~~~~~~~~~~~~~~~~v~~v~ 176 (469)
+.++|+|.|| |++|-.++..|.+.|.+|+++.|.+.-. ++.........++..++.++.
T Consensus 21 ~p~~v~IiGg-G~iG~E~A~~l~~~g~~Vtlv~~~~~il~~~d~~~~~~~~~~l~~~gV~i~~ 82 (117)
T d1onfa2 21 ESKKIGIVGS-GYIAVELINVIKRLGIDSYIFARGNRILRKFDESVINVLENDMKKNNINIVT 82 (117)
T ss_dssp CCSEEEEECC-SHHHHHHHHHHHTTTCEEEEECSSSSSCTTSCHHHHHHHHHHHHHTTCEEEC
T ss_pred CCCEEEEECC-chHHHHHHHHHHhccccceeeehhccccccccHHHHHHHHHHHHhCCCEEEE
Confidence 3578999997 9999999999999999999999976533 444444444555555666554
|
| >d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=96.56 E-value=0.00096 Score=56.97 Aligned_cols=76 Identities=18% Similarity=0.167 Sum_probs=50.0
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCccE
Q 012176 117 NGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTH 196 (469)
Q Consensus 117 ~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~d~ 196 (469)
.+.+|||+||+|.+|...++.....|++|++++++.+. ...... .+...+. |..+. ...+.+....+|.
T Consensus 31 ~~~~vlV~gasGGVG~~aiQlAk~~Ga~Via~~~~~~k-----~~~~~~----lGad~vi-~~~~~-~~~~~l~~~~~~~ 99 (177)
T d1o89a2 31 QDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGREST-----HEYLKS----LGASRVL-PRDEF-AESRPLEKQVWAG 99 (177)
T ss_dssp GGCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGG-----HHHHHH----HTEEEEE-EGGGS-SSCCSSCCCCEEE
T ss_pred CCCcEEEEEccccchHHHHHHHHHcCCCeEEEecchhH-----HHHHHh----hcccccc-ccccH-HHHHHHHhhcCCe
Confidence 34589999999999999999999999999999985431 111111 1333332 32222 2234444455799
Q ss_pred EEEcccc
Q 012176 197 VLHLAAQ 203 (469)
Q Consensus 197 Vih~Aa~ 203 (469)
||++.+.
T Consensus 100 vvD~Vgg 106 (177)
T d1o89a2 100 AIDTVGD 106 (177)
T ss_dssp EEESSCH
T ss_pred eEEEcch
Confidence 9998864
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=96.55 E-value=0.0099 Score=49.46 Aligned_cols=33 Identities=27% Similarity=0.556 Sum_probs=30.3
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCC
Q 012176 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFN 152 (469)
Q Consensus 119 ~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~ 152 (469)
|+|.|.|. |.+|..+++.|.+.|++|++.+|++
T Consensus 1 MkI~iIG~-G~mG~~lA~~l~~~g~~V~~~d~~~ 33 (165)
T d2f1ka2 1 MKIGVVGL-GLIGASLAGDLRRRGHYLIGVSRQQ 33 (165)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred CEEEEEee-cHHHHHHHHHHHHCCCEEEEEECCc
Confidence 78999986 9999999999999999999999843
|
| >d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=96.54 E-value=0.0034 Score=49.90 Aligned_cols=59 Identities=19% Similarity=0.224 Sum_probs=43.7
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCC--CCCChhHHHHHHHhhccCCeEEEEe
Q 012176 118 GMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFN--SYYDPSLKRARQKLLQKHQVFIVEG 177 (469)
Q Consensus 118 ~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~--~~~~~~~~~~~~~~~~~~~v~~v~~ 177 (469)
.++++|+|| |+||-.++..|.+.|.+|+++.|.. ...++.........+...+++++.+
T Consensus 20 P~~vvIIGg-G~iG~E~A~~l~~lG~~Vtii~~~~~l~~~D~~~~~~l~~~l~~~Gv~i~~~ 80 (122)
T d1h6va2 20 PGKTLVVGA-SYVALECAGFLAGIGLDVTVMVRSILLRGFDQDMANKIGEHMEEHGIKFIRQ 80 (122)
T ss_dssp CCSEEEECC-SHHHHHHHHHHHHTTCCEEEEESSSSSTTSCHHHHHHHHHHHHHTTEEEEES
T ss_pred CCeEEEECC-CccHHHHHHHHhhcCCeEEEEEechhhccCCHHHHHHHHHHHHHCCCEEEEC
Confidence 357999997 9999999999999999999998853 2334445555555555556666554
|
| >d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamyl tRNA-reductase middle domain species: Archaeon Methanopyrus kandleri [TaxId: 2320]
Probab=96.50 E-value=0.0048 Score=51.46 Aligned_cols=72 Identities=26% Similarity=0.197 Sum_probs=51.4
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCC-cEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCc
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGD-GVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPF 194 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~ 194 (469)
.++++|||+|+ |-+|+.+++.|...|. +|++..|..+ +.. .+....+... .+.+++.+.+..+
T Consensus 22 l~~~~ilviGa-G~~g~~v~~~L~~~g~~~i~v~nRt~~-------ka~-~l~~~~~~~~-----~~~~~~~~~l~~~-- 85 (159)
T d1gpja2 22 LHDKTVLVVGA-GEMGKTVAKSLVDRGVRAVLVANRTYE-------RAV-ELARDLGGEA-----VRFDELVDHLARS-- 85 (159)
T ss_dssp CTTCEEEEESC-CHHHHHHHHHHHHHCCSEEEEECSSHH-------HHH-HHHHHHTCEE-----CCGGGHHHHHHTC--
T ss_pred cccCeEEEECC-CHHHHHHHHHHHhcCCcEEEEEcCcHH-------HHH-HHHHhhhccc-----ccchhHHHHhccC--
Confidence 67889999997 9999999999999997 5888888322 111 1111113332 2355677788877
Q ss_pred cEEEEcccc
Q 012176 195 THVLHLAAQ 203 (469)
Q Consensus 195 d~Vih~Aa~ 203 (469)
|+||.+.+.
T Consensus 86 Divi~atss 94 (159)
T d1gpja2 86 DVVVSATAA 94 (159)
T ss_dssp SEEEECCSS
T ss_pred CEEEEecCC
Confidence 999999875
|
| >d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Probab=96.46 E-value=0.0015 Score=54.58 Aligned_cols=35 Identities=31% Similarity=0.352 Sum_probs=32.5
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCC
Q 012176 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSY 154 (469)
Q Consensus 119 ~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~ 154 (469)
|||+|+|+ |.+|..++..|.+.||+|++++|....
T Consensus 1 MkI~IiGa-G~iG~~~a~~L~~~G~~V~~~~r~~~~ 35 (167)
T d1ks9a2 1 MKITVLGC-GALGQLWLTALCKQGHEVQGWLRVPQP 35 (167)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSCCS
T ss_pred CEEEEECc-CHHHHHHHHHHHHCCCceEEEEcCHHH
Confidence 79999998 999999999999999999999997653
|
| >d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Thermotoga maritima [TaxId: 2336]
Probab=96.46 E-value=0.0019 Score=51.89 Aligned_cols=72 Identities=15% Similarity=0.320 Sum_probs=51.3
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCccEEE
Q 012176 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTHVL 198 (469)
Q Consensus 119 ~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~d~Vi 198 (469)
|+|.|.|++|-+|+.|++.+.++|+++.+..- ... .+.++. +|+||
T Consensus 1 mki~i~G~~GrMG~~i~~~~~~~~~~l~~~id----------------------------~~~----~~~~~~--~DVvI 46 (128)
T d1vm6a3 1 MKYGIVGYSGRMGQEIQKVFSEKGHELVLKVD----------------------------VNG----VEELDS--PDVVI 46 (128)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEEE----------------------------TTE----EEECSC--CSEEE
T ss_pred CEEEEECCCCHHHHHHHHHHhcCCCeEEEEEC----------------------------CCc----HHHhcc--CCEEE
Confidence 68999999999999999999999998765421 000 011233 49999
Q ss_pred EcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEc
Q 012176 199 HLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWAS 244 (469)
Q Consensus 199 h~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~S 244 (469)
+.... .++...++.|.+++. .+|.-+
T Consensus 47 DFS~p------------------~~~~~~l~~~~~~~~--p~ViGT 72 (128)
T d1vm6a3 47 DFSSP------------------EALPKTVDLCKKYRA--GLVLGT 72 (128)
T ss_dssp ECSCG------------------GGHHHHHHHHHHHTC--EEEECC
T ss_pred EecCH------------------HHHHHHHHHHHhcCC--CEEEEc
Confidence 98743 246788899999987 455433
|
| >d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.44 E-value=0.0041 Score=49.56 Aligned_cols=58 Identities=14% Similarity=0.182 Sum_probs=42.9
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCC---ChhHHHHHHHhhccCCeEEEE
Q 012176 118 GMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYY---DPSLKRARQKLLQKHQVFIVE 176 (469)
Q Consensus 118 ~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~---~~~~~~~~~~~~~~~~v~~v~ 176 (469)
.++|+|.|| |+||-.++..|.+.|.+|+++.|.+... ++...+...+.++..+++++.
T Consensus 22 pk~vvIvGg-G~iG~E~A~~l~~~G~~Vtlv~~~~~~l~~~d~~~~~~~~~~l~~~Gv~i~~ 82 (125)
T d3grsa2 22 PGRSVIVGA-GYIAVEMAGILSALGSKTSLMIRHDKVLRSFDSMISTNCTEELENAGVEVLK 82 (125)
T ss_dssp CSEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSSSSCTTSCHHHHHHHHHHHHHTTCEEET
T ss_pred CCEEEEEcC-CccHHHHHHHHhcCCcEEEEEeeccccccchhhHHHHHHHHHHHHCCCEEEe
Confidence 378999997 9999999999999999999999976533 444444444444555555443
|
| >d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Probab=96.43 E-value=0.0049 Score=48.61 Aligned_cols=60 Identities=25% Similarity=0.355 Sum_probs=44.3
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCC---CChhHHHHHHHhhccCCeEEEEe
Q 012176 117 NGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSY---YDPSLKRARQKLLQKHQVFIVEG 177 (469)
Q Consensus 117 ~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~---~~~~~~~~~~~~~~~~~v~~v~~ 177 (469)
-.++++|.|| |+||-.++..|.+.|.+|+++.+.+.- .++.........+...+++++.+
T Consensus 21 ~p~~i~IiG~-G~ig~E~A~~l~~~G~~Vtiv~~~~~ll~~~d~ei~~~l~~~l~~~Gv~i~~~ 83 (119)
T d3lada2 21 VPGKLGVIGA-GVIGLELGSVWARLGAEVTVLEAMDKFLPAVDEQVAKEAQKILTKQGLKILLG 83 (119)
T ss_dssp CCSEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSSSSSTTSCHHHHHHHHHHHHHTTEEEEET
T ss_pred CCCeEEEECC-ChHHHHHHHHHHHcCCceEEEEeecccCCcccchhHHHHHHHHHhcCceeecC
Confidence 3478999996 999999999999999999999987653 34444444455555556655543
|
| >d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.41 E-value=0.0044 Score=49.17 Aligned_cols=58 Identities=19% Similarity=0.248 Sum_probs=42.0
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCC---CChhHHHHHHHhhccCCeEEEE
Q 012176 118 GMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSY---YDPSLKRARQKLLQKHQVFIVE 176 (469)
Q Consensus 118 ~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~---~~~~~~~~~~~~~~~~~v~~v~ 176 (469)
.++++|.|| |+||-.++..|.+.|.+|+++.+.+.. .++.........++..++++..
T Consensus 23 p~~~vIiG~-G~ig~E~A~~l~~lG~~Vtii~~~~~~l~~~d~ei~~~l~~~l~~~GV~i~~ 83 (122)
T d1v59a2 23 PKRLTIIGG-GIIGLEMGSVYSRLGSKVTVVEFQPQIGASMDGEVAKATQKFLKKQGLDFKL 83 (122)
T ss_dssp CSEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSSSSSSSSCHHHHHHHHHHHHHTTCEEEC
T ss_pred CCeEEEECC-CchHHHHHHHHHhhCcceeEEEeccccchhhhhhhHHHHHHHHHhccceEEe
Confidence 468999997 999999999999999999999987643 3334444444444444555443
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.38 E-value=0.012 Score=49.37 Aligned_cols=78 Identities=17% Similarity=0.185 Sum_probs=51.2
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCC-cEEEEeCCCCCCChhHHHHHHHhhccCCe-EEEEecCCCHHHHHHhhc---
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGD-GVLGLDNFNSYYDPSLKRARQKLLQKHQV-FIVEGDLNDAPLLTKLFD--- 190 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~v-~~v~~Dl~d~~~l~~~~~--- 190 (469)
..+.+|+|+|+ |.+|...++.+...|. +|+++++++. +.... ..-+. .++..+-.+.....+.+.
T Consensus 25 ~~gd~VlI~G~-G~iG~~~~~~a~~~G~~~Vi~~d~~~~------rl~~a---~~~Ga~~~~~~~~~~~~~~~~~~~~~~ 94 (171)
T d1pl8a2 25 TLGHKVLVCGA-GPIGMVTLLVAKAMGAAQVVVTDLSAT------RLSKA---KEIGADLVLQISKESPQEIARKVEGQL 94 (171)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEESCHH------HHHHH---HHTTCSEEEECSSCCHHHHHHHHHHHH
T ss_pred CCCCEEEEECC-CccHHHHHHHHHHcCCceEEeccCCHH------HHHHH---HHhCCcccccccccccccccccccccC
Confidence 35678999987 9999999999999998 6999887432 11111 11233 233334445555544443
Q ss_pred cCCccEEEEcccc
Q 012176 191 VVPFTHVLHLAAQ 203 (469)
Q Consensus 191 ~~~~d~Vih~Aa~ 203 (469)
+.++|+||.+.|.
T Consensus 95 g~g~Dvvid~~G~ 107 (171)
T d1pl8a2 95 GCKPEVTIECTGA 107 (171)
T ss_dssp TSCCSEEEECSCC
T ss_pred CCCceEEEeccCC
Confidence 3467999999985
|
| >d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=96.35 E-value=0.0048 Score=48.89 Aligned_cols=59 Identities=19% Similarity=0.261 Sum_probs=43.3
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCC--CChhHHHHHHHhhccCCeEEEEe
Q 012176 118 GMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSY--YDPSLKRARQKLLQKHQVFIVEG 177 (469)
Q Consensus 118 ~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~--~~~~~~~~~~~~~~~~~v~~v~~ 177 (469)
.++|+|.|| |++|-.++..|.+.|.+|+++.|.+.- .++.........+...+++++..
T Consensus 32 ~~~vvIiGg-G~iG~E~A~~l~~~g~~Vtlv~~~~~l~~~d~~~~~~~~~~l~~~GV~~~~~ 92 (122)
T d1xhca2 32 SGEAIIIGG-GFIGLELAGNLAEAGYHVKLIHRGAMFLGLDEELSNMIKDMLEETGVKFFLN 92 (122)
T ss_dssp HSEEEEEEC-SHHHHHHHHHHHHTTCEEEEECSSSCCTTCCHHHHHHHHHHHHHTTEEEECS
T ss_pred CCcEEEECC-cHHHHHHHHHhhcccceEEEEeccccccCCCHHHHHHHHHHHHHCCcEEEeC
Confidence 468999996 999999999999999999999987653 23444444444455556666543
|
| >d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=96.27 E-value=0.0019 Score=46.91 Aligned_cols=38 Identities=37% Similarity=0.464 Sum_probs=33.5
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCC
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNS 153 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~ 153 (469)
.++++|||+||+|.+|...++.+...|.+|++++++++
T Consensus 30 ~~~~~vlI~gasGgVG~~aiQlak~~G~~Vi~~t~s~~ 67 (77)
T d1o8ca2 30 PQDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRES 67 (77)
T ss_dssp GGGCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGG
T ss_pred cCCCcEEEEeCCCcHHHHHHHHHHHcCCeEEEEECCHH
Confidence 35678999999999999999999999999999988543
|
| >d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD species: Escherichia coli [TaxId: 562]
Probab=96.26 E-value=0.0094 Score=44.64 Aligned_cols=88 Identities=17% Similarity=0.134 Sum_probs=59.1
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCcc
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFT 195 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~d 195 (469)
.++|+|+|.|. |-.|..+++.|.++|++|++.+......... .+ ...+.+..+.. +. ..+++. |
T Consensus 3 ~~~K~v~ViGl-G~sG~s~a~~L~~~g~~v~~~D~~~~~~~~~-------~~-~~~~~~~~~~~-~~----~~~~~~--d 66 (93)
T d2jfga1 3 YQGKNVVIIGL-GLTGLSCVDFFLARGVTPRVMDTRMTPPGLD-------KL-PEAVERHTGSL-ND----EWLMAA--D 66 (93)
T ss_dssp CTTCCEEEECC-SHHHHHHHHHHHHTTCCCEEEESSSSCTTGG-------GS-CTTSCEEESBC-CH----HHHHHC--S
T ss_pred cCCCEEEEEeE-CHHHHHHHHHHHHCCCEEEEeeCCcCchhHH-------HH-hhccceeeccc-ch----hhhccC--C
Confidence 57889999997 8899999999999999999999855422211 11 12444554443 22 234455 9
Q ss_pred EEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCC
Q 012176 196 HVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQ 237 (469)
Q Consensus 196 ~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~ 237 (469)
.||-.-|... + ..+++.|++.|++
T Consensus 67 ~vi~SPGi~~-----~-------------~~~~~~a~~~gi~ 90 (93)
T d2jfga1 67 LIVASPGIAL-----A-------------HPSLSAAADAGIE 90 (93)
T ss_dssp EEEECTTSCT-----T-------------SHHHHHHHHTTCE
T ss_pred EEEECCCCCC-----C-------------CHHHHHHHHcCCC
Confidence 9998777521 1 2577778888763
|
| >d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Probab=96.21 E-value=0.0099 Score=49.38 Aligned_cols=65 Identities=15% Similarity=0.112 Sum_probs=45.4
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCccEEE
Q 012176 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTHVL 198 (469)
Q Consensus 119 ~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~d~Vi 198 (469)
|+|.|.| .|.+|..+++.|+++|++|++.+|..+ +...+...+.... ++.+++++.+ |+||
T Consensus 1 MkIgiIG-lG~MG~~~A~~L~~~G~~V~~~d~~~~---------~~~~~~~~~~~~~-------~~~~e~~~~~--d~ii 61 (161)
T d1vpda2 1 MKVGFIG-LGIMGKPMSKNLLKAGYSLVVSDRNPE---------AIADVIAAGAETA-------STAKAIAEQC--DVII 61 (161)
T ss_dssp CEEEEEC-CSTTHHHHHHHHHHTTCEEEEECSCHH---------HHHHHHHTTCEEC-------SSHHHHHHHC--SEEE
T ss_pred CEEEEEe-hhHHHHHHHHHHHHCCCeEEEEeCCcc---------hhHHHHHhhhhhc-------ccHHHHHhCC--CeEE
Confidence 6899998 499999999999999999999998432 1111112233221 2345667777 9999
Q ss_pred Eccc
Q 012176 199 HLAA 202 (469)
Q Consensus 199 h~Aa 202 (469)
-+..
T Consensus 62 ~~v~ 65 (161)
T d1vpda2 62 TMLP 65 (161)
T ss_dssp ECCS
T ss_pred EEcC
Confidence 8863
|
| >d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Vibrio cholerae [TaxId: 666]
Probab=96.21 E-value=0.011 Score=48.47 Aligned_cols=31 Identities=23% Similarity=0.156 Sum_probs=25.1
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCC-C---cEEEEe
Q 012176 119 MTVLVTGAAGFVGSHCSLALKKRG-D---GVLGLD 149 (469)
Q Consensus 119 ~~VlVtGatG~IG~~l~~~L~~~G-~---~V~~~~ 149 (469)
|+|.|.||||++|+.|++.|+++. | ++..+.
T Consensus 1 mKVaIiGATGyvG~eLi~lLl~~~~~p~~~i~~~s 35 (147)
T d1mb4a1 1 MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFS 35 (147)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEE
T ss_pred CEEEEECCccHHHHHHHHHHHhcCCCCceEEEEec
Confidence 789999999999999999998753 3 555444
|
| >d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=96.18 E-value=0.0055 Score=48.07 Aligned_cols=58 Identities=17% Similarity=0.277 Sum_probs=41.3
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCC---ChhHHHHHHHhhccCCeEEEE
Q 012176 118 GMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYY---DPSLKRARQKLLQKHQVFIVE 176 (469)
Q Consensus 118 ~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~---~~~~~~~~~~~~~~~~v~~v~ 176 (469)
.++|+|.|| |++|-.++..|.+.|.+|+++.|.+... ++...+...+.++..+++++.
T Consensus 21 p~~vvIiGg-G~ig~E~A~~l~~~G~~Vtlve~~~~~l~~~d~~~~~~~~~~l~~~GV~~~~ 81 (116)
T d1gesa2 21 PERVAVVGA-GYIGVELGGVINGLGAKTHLFEMFDAPLPSFDPMISETLVEVMNAEGPQLHT 81 (116)
T ss_dssp CSEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHHSCEEEC
T ss_pred CCEEEEECC-ChhhHHHHHHhhccccEEEEEeecchhhhhcchhhHHHHHHHHHHCCCEEEe
Confidence 368999996 9999999999999999999999977543 333333333334444555443
|
| >d2g17a1 c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC species: Salmonella typhimurium [TaxId: 90371]
Probab=96.17 E-value=0.0074 Score=51.24 Aligned_cols=31 Identities=19% Similarity=0.397 Sum_probs=26.3
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHC-CCcEEEE
Q 012176 118 GMTVLVTGAAGFVGSHCSLALKKR-GDGVLGL 148 (469)
Q Consensus 118 ~~~VlVtGatG~IG~~l~~~L~~~-G~~V~~~ 148 (469)
+++|.|.|||||+|..|++.|..+ ..+|..+
T Consensus 1 MikVaIiGATGyvG~eLlrlL~~HP~~ei~~l 32 (179)
T d2g17a1 1 MLNTLIVGASGYAGAELVSYVNRHPHMTITAL 32 (179)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHCTTEEEEEE
T ss_pred CcEEEEECcccHHHHHHHHHHHhCCCCceEee
Confidence 478999999999999999999998 4566544
|
| >d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=96.16 E-value=0.0058 Score=51.95 Aligned_cols=78 Identities=21% Similarity=0.135 Sum_probs=49.3
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhc--cCCeEEEEecCCCHHHHHHhhccCCccE
Q 012176 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQ--KHQVFIVEGDLNDAPLLTKLFDVVPFTH 196 (469)
Q Consensus 119 ~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~--~~~v~~v~~Dl~d~~~l~~~~~~~~~d~ 196 (469)
|+|.|.|+ |-.|..++..|.+.|++|++..|..+ +........... ..+......++.-.++++++++++ |+
T Consensus 1 MkI~ViGa-G~~GtalA~~la~~g~~V~l~~r~~~---~~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~a--d~ 74 (180)
T d1txga2 1 MIVSILGA-GAMGSALSVPLVDNGNEVRIWGTEFD---TEILKSISAGREHPRLGVKLNGVEIFWPEQLEKCLENA--EV 74 (180)
T ss_dssp CEEEEESC-CHHHHHHHHHHHHHCCEEEEECCGGG---HHHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHHHTTC--SE
T ss_pred CEEEEECC-CHHHHHHHHHHHHCCCEEEEEEeccc---HHHHHHHhhhhhhhhhcchhccccccccccHHHHHhcc--ch
Confidence 78999996 99999999999999999999988322 111111111000 011111122233356688888888 99
Q ss_pred EEEccc
Q 012176 197 VLHLAA 202 (469)
Q Consensus 197 Vih~Aa 202 (469)
||...-
T Consensus 75 Ii~avp 80 (180)
T d1txga2 75 VLLGVS 80 (180)
T ss_dssp EEECSC
T ss_pred hhcccc
Confidence 987653
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.15 E-value=0.0028 Score=53.30 Aligned_cols=76 Identities=22% Similarity=0.210 Sum_probs=49.1
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCcc
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFT 195 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~d 195 (469)
..+.+|+|+|+ |.+|...++.+...|.+|++++++++. +...+ + + +...+.-...+.+..++..++ +|
T Consensus 26 ~~g~~vlI~Ga-G~vG~~a~q~ak~~G~~vi~~~~~~~k----~~~a~-~-l---Ga~~~i~~~~~~~~~~~~~~~--~d 93 (168)
T d1piwa2 26 GPGKKVGIVGL-GGIGSMGTLISKAMGAETYVISRSSRK----REDAM-K-M---GADHYIATLEEGDWGEKYFDT--FD 93 (168)
T ss_dssp STTCEEEEECC-SHHHHHHHHHHHHHTCEEEEEESSSTT----HHHHH-H-H---TCSEEEEGGGTSCHHHHSCSC--EE
T ss_pred CCCCEEEEECC-CCcchhHHHHhhhccccccccccchhH----HHHhh-c-c---CCcEEeeccchHHHHHhhhcc--cc
Confidence 46789999997 999999999888889999999986542 22221 1 1 222222112233334444444 59
Q ss_pred EEEEcccc
Q 012176 196 HVLHLAAQ 203 (469)
Q Consensus 196 ~Vih~Aa~ 203 (469)
+|+.+.+.
T Consensus 94 ~vi~~~~~ 101 (168)
T d1piwa2 94 LIVVCASS 101 (168)
T ss_dssp EEEECCSC
T ss_pred eEEEEecC
Confidence 99999775
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=96.04 E-value=0.0053 Score=51.48 Aligned_cols=75 Identities=19% Similarity=0.142 Sum_probs=52.8
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCcc
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFT 195 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~d 195 (469)
..+.+|+|.|+ |.||...++.+...|.+|+++++.++ .+. ....+ +...+ .|..+.+......+++ |
T Consensus 29 ~~G~~VlI~Ga-G~vG~~a~qlak~~Ga~~i~~~~~~~----~~~--~a~~l---Gad~~-i~~~~~~~~~~~~~~~--D 95 (168)
T d1uufa2 29 GPGKKVGVVGI-GGLGHMGIKLAHAMGAHVVAFTTSEA----KRE--AAKAL---GADEV-VNSRNADEMAAHLKSF--D 95 (168)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSGG----GHH--HHHHH---TCSEE-EETTCHHHHHTTTTCE--E
T ss_pred CCCCEEEEecc-chHHHHHHHHhhcccccchhhccchh----HHH--HHhcc---CCcEE-EECchhhHHHHhcCCC--c
Confidence 56789999986 89999999999999999999987543 111 11111 22222 3666776666666555 9
Q ss_pred EEEEcccc
Q 012176 196 HVLHLAAQ 203 (469)
Q Consensus 196 ~Vih~Aa~ 203 (469)
+||.+.|.
T Consensus 96 ~vid~~g~ 103 (168)
T d1uufa2 96 FILNTVAA 103 (168)
T ss_dssp EEEECCSS
T ss_pred eeeeeeec
Confidence 99999985
|
| >d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=96.02 E-value=0.0058 Score=47.81 Aligned_cols=57 Identities=23% Similarity=0.377 Sum_probs=40.6
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCC---CChhHHHHHHHhhccCCeEEE
Q 012176 118 GMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSY---YDPSLKRARQKLLQKHQVFIV 175 (469)
Q Consensus 118 ~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~---~~~~~~~~~~~~~~~~~v~~v 175 (469)
.++++|.|| |++|-.++..|.+.|.+|+++.+.+.- .++...+...+.+...+++++
T Consensus 21 p~~vvIiGg-G~~G~E~A~~l~~~g~~Vtlve~~~~il~~~d~~~~~~l~~~l~~~gV~i~ 80 (115)
T d1lvla2 21 PQHLVVVGG-GYIGLELGIAYRKLGAQVSVVEARERILPTYDSELTAPVAESLKKLGIALH 80 (115)
T ss_dssp CSEEEEECC-SHHHHHHHHHHHHHTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHHTCEEE
T ss_pred CCeEEEECC-CHHHHHHHHHHhhcccceEEEeeeccccccccchhHHHHHHHHHhhcceEE
Confidence 478999996 999999999999999999999987653 233333333334444445444
|
| >d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Conserved hypothetical protein MTH1747 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=96.01 E-value=0.017 Score=47.26 Aligned_cols=34 Identities=26% Similarity=0.192 Sum_probs=30.3
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCC
Q 012176 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNS 153 (469)
Q Consensus 119 ~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~ 153 (469)
|||.|.| .|.+|+.+++.|+++|++|++.++...
T Consensus 1 MkIgiIG-~G~mG~~ia~~l~~~g~~v~~~~~~~~ 34 (152)
T d1i36a2 1 LRVGFIG-FGEVAQTLASRLRSRGVEVVTSLEGRS 34 (152)
T ss_dssp CEEEEES-CSHHHHHHHHHHHHTTCEEEECCTTCC
T ss_pred CEEEEEc-HHHHHHHHHHHHHHCCCeEEEEcCchh
Confidence 6899998 599999999999999999999887554
|
| >d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=95.97 E-value=0.051 Score=44.83 Aligned_cols=101 Identities=16% Similarity=0.080 Sum_probs=62.1
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHH----------HhhccCCeEEEEecCCCHHHHHH
Q 012176 118 GMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQ----------KLLQKHQVFIVEGDLNDAPLLTK 187 (469)
Q Consensus 118 ~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~----------~~~~~~~v~~v~~Dl~d~~~l~~ 187 (469)
+++|.|.| .|.+|..+++.|+++||+|++.+|+... ...... +.. ....++..-+.+.+.++.
T Consensus 1 M~kIg~IG-lG~MG~~iA~~L~~~g~~v~~~d~~~~~----~~~~~~~~~~~~~~~~e~~--~~~diii~~v~~~~~~~~ 73 (162)
T d3cuma2 1 MKQIAFIG-LGHMGAPMATNLLKAGYLLNVFDLVQSA----VDGLVAAGASAARSARDAV--QGADVVISMLPASQHVEG 73 (162)
T ss_dssp CCEEEEEC-CSTTHHHHHHHHHHTTCEEEEECSSHHH----HHHHHHTTCEECSSHHHHH--TSCSEEEECCSCHHHHHH
T ss_pred CCEEEEEE-EHHHHHHHHHHHHHCCCeEEEEECchhh----hhhhhhhhccccchhhhhc--cccCeeeecccchhhHHH
Confidence 36899998 5999999999999999999999985331 111110 111 123344444555666655
Q ss_pred hhccC--------CccEEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEE
Q 012176 188 LFDVV--------PFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWA 243 (469)
Q Consensus 188 ~~~~~--------~~d~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~ 243 (469)
++... +=++||++... ..+.+..+.+.+++.|. +|+-+
T Consensus 74 v~~~~~~~~~~l~~g~iiid~st~----------------~p~~~~~~~~~~~~~gi--~~~da 119 (162)
T d3cuma2 74 LYLDDDGLLAHIAPGTLVLECSTI----------------APTSARKIHAAARERGL--AMLDA 119 (162)
T ss_dssp HHHSTTCHHHHSCTTCEEEECSCC----------------CHHHHHHHHHHHHHTTC--EEEEC
T ss_pred HHhccccccccCCCCCEEEECCCC----------------CHHHHHHHHHHHHHCCC--cEEec
Confidence 54321 12567776654 12335677777877775 56643
|
| >d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Sheep (Ovis orientalis aries) [TaxId: 9940]
Probab=95.95 E-value=0.013 Score=49.30 Aligned_cols=35 Identities=17% Similarity=0.245 Sum_probs=31.2
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCC
Q 012176 118 GMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNS 153 (469)
Q Consensus 118 ~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~ 153 (469)
+.+|-|+|- |.+|..+++.|++.|++|++.+|..+
T Consensus 2 ~~nIg~IGl-G~MG~~mA~~L~~~G~~V~v~dr~~~ 36 (176)
T d2pgda2 2 QADIALIGL-AVMGQNLILNMNDHGFVVCAFNRTVS 36 (176)
T ss_dssp CBSEEEECC-SHHHHHHHHHHHHTTCCEEEECSSTH
T ss_pred CCcEEEEeE-hHHHHHHHHHHHHCCCeEEEEcCCHH
Confidence 357899995 99999999999999999999999654
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=95.93 E-value=0.012 Score=49.06 Aligned_cols=77 Identities=17% Similarity=0.248 Sum_probs=49.6
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCC-CcEEEEeCCCCCCChhHHHHHHHhhccCCe-EEEEecCCCHHHHHHhh---c
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRG-DGVLGLDNFNSYYDPSLKRARQKLLQKHQV-FIVEGDLNDAPLLTKLF---D 190 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v-~~v~~Dl~d~~~l~~~~---~ 190 (469)
..+.+|+|+|++|.+|...++.+...| .+|++++++.. +......-+. .++ |..+.+..+++. .
T Consensus 26 ~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~---------~~~~~~~~Ga~~~i--~~~~~~~~~~~~~~~~ 94 (170)
T d1jvba2 26 DPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREE---------AVEAAKRAGADYVI--NASMQDPLAEIRRITE 94 (170)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHH---------HHHHHHHHTCSEEE--ETTTSCHHHHHHHHTT
T ss_pred CCCCEEEEEeccccceeeeeecccccccccccccccchh---------hHHHHHHcCCceee--ccCCcCHHHHHHHHhh
Confidence 456789999999999999999999888 48888887321 1111111132 233 333433333333 3
Q ss_pred cCCccEEEEcccc
Q 012176 191 VVPFTHVLHLAAQ 203 (469)
Q Consensus 191 ~~~~d~Vih~Aa~ 203 (469)
+-++|+||.++|.
T Consensus 95 ~~~~d~vid~~g~ 107 (170)
T d1jvba2 95 SKGVDAVIDLNNS 107 (170)
T ss_dssp TSCEEEEEESCCC
T ss_pred cccchhhhccccc
Confidence 4467999999975
|
| >d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Escherichia coli [TaxId: 562]
Probab=95.85 E-value=0.012 Score=49.46 Aligned_cols=36 Identities=22% Similarity=0.176 Sum_probs=32.6
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCC
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFN 152 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~ 152 (469)
.++|+|+|.|+ |..++.++..|.+.|.+|+++.|..
T Consensus 16 ~~~k~vlIlGa-GGaarai~~al~~~g~~i~I~nRt~ 51 (170)
T d1nyta1 16 RPGLRILLIGA-GGASRGVLLPLLSLDCAVTITNRTV 51 (170)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred CCCCEEEEECC-cHHHHHHHHHhcccceEEEeccchH
Confidence 57899999996 9999999999999999999999943
|
| >d2csua1 c.2.1.8 (A:1-129) Acetate-CoA ligase alpha chain, AcdA, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Acetate-CoA ligase alpha chain, AcdA, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=95.84 E-value=0.022 Score=45.47 Aligned_cols=115 Identities=17% Similarity=0.152 Sum_probs=71.4
Q ss_pred CCCCEEEEEcCC---ChhHHHHHHHHHHCC-CcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhcc
Q 012176 116 PNGMTVLVTGAA---GFVGSHCSLALKKRG-DGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDV 191 (469)
Q Consensus 116 ~~~~~VlVtGat---G~IG~~l~~~L~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~ 191 (469)
.+.++|.|+||+ +-.|..+.+.|.+.| .+|+.+...... -.++..+ -++.| +-.
T Consensus 6 f~PksIAVVGaS~~~~~~g~~v~~~L~~~~~g~v~pVnP~~~~--------------i~G~~~y-~sl~d------lp~- 63 (129)
T d2csua1 6 FNPKGIAVIGASNDPKKLGYEVFKNLKEYKKGKVYPVNIKEEE--------------VQGVKAY-KSVKD------IPD- 63 (129)
T ss_dssp TSCSEEEEETCCSCTTSHHHHHHHHHTTCCSSEEEEECSSCSE--------------ETTEECB-SSTTS------CSS-
T ss_pred CCCCeEEEEccCCCCCCcHHHHHHHHHHcCCCcEEEeccCccc--------------cCCeEee-cchhh------cCC-
Confidence 456899999999 999999999988766 688888642210 0122211 13322 222
Q ss_pred CCccEEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcCccccCCCCCCCCCCCCCCCCCCChHH
Q 012176 192 VPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYA 271 (469)
Q Consensus 192 ~~~d~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y~ 271 (469)
.+|.++-+.. -..+..+++.|.+.|++ .++.+|+.. .|. +
T Consensus 64 -~vDlvvi~vp------------------~~~~~~~~~~~~~~g~~-~~vi~s~Gf----------~e~----------~ 103 (129)
T d2csua1 64 -EIDLAIIVVP------------------KRFVKDTLIQCGEKGVK-GVVIITAGF----------GET----------G 103 (129)
T ss_dssp -CCSEEEECSC------------------HHHHHHHHHHHHHHTCC-EEEECCCSS----------TTS----------C
T ss_pred -CCceEEEecC------------------hHHhHHHHHHHHHcCCC-EEEEecccc----------ccc----------c
Confidence 4588886653 22456788889999987 777777521 111 1
Q ss_pred HHHHHHHHHHHHHHHHhCCcE
Q 012176 272 ATKKAGEEIAHTYNHIYGLAL 292 (469)
Q Consensus 272 ~sK~~~E~~~~~~~~~~gi~~ 292 (469)
......|+.+.+.++++|+++
T Consensus 104 ~~~~~~~~~l~~~a~~~girv 124 (129)
T d2csua1 104 EEGKREEKELVEIAHKYGMRI 124 (129)
T ss_dssp HHHHHHHHHHHHHHHHHTCEE
T ss_pred hhhHHHHHHHHHHHHHcCCEE
Confidence 223444555677777778763
|
| >d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Fatty oxidation complex alpha subunit, middle domain species: Pseudomonas fragi [TaxId: 296]
Probab=95.74 E-value=0.0071 Score=51.71 Aligned_cols=36 Identities=22% Similarity=0.265 Sum_probs=32.2
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCC
Q 012176 117 NGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNS 153 (469)
Q Consensus 117 ~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~ 153 (469)
+-++|.|.|| |.+|+.++..++..|++|++.+++.+
T Consensus 3 ~I~~vaViGa-G~mG~~iA~~~a~~G~~V~l~D~~~~ 38 (186)
T d1wdka3 3 DVKQAAVLGA-GIMGGGIAYQSASKGTPILMKDINEH 38 (186)
T ss_dssp CCSSEEEECC-HHHHHHHHHHHHHTTCCEEEECSSHH
T ss_pred CCCEEEEECc-CHHHHHHHHHHHhCCCeEEEEECCHH
Confidence 3467999997 99999999999999999999999654
|
| >d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.71 E-value=0.0025 Score=55.00 Aligned_cols=36 Identities=22% Similarity=0.300 Sum_probs=32.6
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCC
Q 012176 118 GMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSY 154 (469)
Q Consensus 118 ~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~ 154 (469)
-++|.|.|| |.+|+.++..++..|++|++.+++.+.
T Consensus 4 IkkvaViGa-G~mG~~iA~~~a~~G~~V~l~D~~~~~ 39 (192)
T d1f0ya2 4 VKHVTVIGG-GLMGAGIAQVAAATGHTVVLVDQTEDI 39 (192)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCHHH
T ss_pred eEEEEEECc-CHHHHHHHHHHHhCCCcEEEEECChHH
Confidence 479999997 999999999999999999999986653
|
| >d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Probab=95.66 E-value=0.021 Score=44.71 Aligned_cols=38 Identities=18% Similarity=0.190 Sum_probs=33.5
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCC
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSY 154 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~ 154 (469)
..+++|+|.|| |++|-.++..|.+.|.+|+++.|.+..
T Consensus 20 ~~~~~vvVvGg-G~ig~E~A~~l~~~g~~vt~i~~~~~~ 57 (121)
T d1mo9a2 20 EPGSTVVVVGG-SKTAVEYGCFFNATGRRTVMLVRTEPL 57 (121)
T ss_dssp CCCSEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSCTT
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhcchhheEeeccchh
Confidence 34689999996 999999999999999999999987653
|
| >d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: 2,4-dienoyl-CoA reductase species: Yeast (Candida tropicalis) [TaxId: 5482]
Probab=95.63 E-value=0.023 Score=48.37 Aligned_cols=37 Identities=16% Similarity=0.082 Sum_probs=31.1
Q ss_pred CCCEEEE-EcCCChhHHHHHHHHHHCCCcEEEEeCCCC
Q 012176 117 NGMTVLV-TGAAGFVGSHCSLALKKRGDGVLGLDNFNS 153 (469)
Q Consensus 117 ~~~~VlV-tGatG~IG~~l~~~L~~~G~~V~~~~r~~~ 153 (469)
.+.+|+| +||+|.+|...++.....|.+|++++|..+
T Consensus 28 ~g~~vli~~ga~g~vG~~aiqlAk~~Ga~vI~~v~~~~ 65 (189)
T d1gu7a2 28 PGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRP 65 (189)
T ss_dssp TTTCEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCCT
T ss_pred CCCEEEEEeCCCchHHHHHHHHHhhcCCeEEEEEeccc
Confidence 4555666 699999999999999999999999998654
|
| >d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=95.58 E-value=0.015 Score=46.67 Aligned_cols=38 Identities=21% Similarity=0.260 Sum_probs=34.0
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCC
Q 012176 117 NGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYY 155 (469)
Q Consensus 117 ~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~ 155 (469)
..++|+|.|| |++|-.++..|.+.|.+|+++.+.+...
T Consensus 34 ~~k~v~VIGg-G~iG~E~A~~l~~~g~~Vtvie~~~~~l 71 (133)
T d1q1ra2 34 ADNRLVVIGG-GYIGLEVAATAIKANMHVTLLDTAARVL 71 (133)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSSSTT
T ss_pred cCCEEEEECC-chHHHHHHHHHHhhCcceeeeeeccccc
Confidence 4689999996 9999999999999999999999977643
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=95.54 E-value=0.04 Score=46.25 Aligned_cols=78 Identities=17% Similarity=0.208 Sum_probs=51.6
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCC-cEEEEeCCCCCCChhHHHHHHHhhccCCeE-EEE-ecCCC-HHHHHHhhcc
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGD-GVLGLDNFNSYYDPSLKRARQKLLQKHQVF-IVE-GDLND-APLLTKLFDV 191 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~-~v~-~Dl~d-~~~l~~~~~~ 191 (469)
..+.+|+|+|+ |.+|...++.+...|. +|++++++++ .++..+ .. +.. ++. -|-.+ .+.+.+...+
T Consensus 28 ~~g~tVlI~G~-GgvGl~ai~~ak~~G~~~Vi~vd~~~~----kl~~Ak-~~----GA~~~in~~~~~~~~~~~~~~~~g 97 (176)
T d1d1ta2 28 KPGSTCVVFGL-GGVGLSVIMGCKSAGASRIIGIDLNKD----KFEKAM-AV----GATECISPKDSTKPISEVLSEMTG 97 (176)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGG----GHHHHH-HH----TCSEEECGGGCSSCHHHHHHHHHT
T ss_pred CCCCEEEEECC-CchhHHHHHHHHHcCCceEEEecCcHH----HHHHHH-hc----CCcEEECccccchHHHHHHHHhcc
Confidence 56779999986 9999999999999995 7999998554 222222 11 222 221 12222 3445555666
Q ss_pred CCccEEEEcccc
Q 012176 192 VPFTHVLHLAAQ 203 (469)
Q Consensus 192 ~~~d~Vih~Aa~ 203 (469)
.++|+||.+.+.
T Consensus 98 ~G~d~vi~~~g~ 109 (176)
T d1d1ta2 98 NNVGYTFEVIGH 109 (176)
T ss_dssp SCCCEEEECSCC
T ss_pred ccceEEEEeCCc
Confidence 678999999986
|
| >d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Putative semialdehyde dehydrogenase species: Rice (Oryza sativa) [TaxId: 4530]
Probab=95.53 E-value=0.0068 Score=51.73 Aligned_cols=34 Identities=18% Similarity=0.263 Sum_probs=28.1
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCC-CcEEEEe
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRG-DGVLGLD 149 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G-~~V~~~~ 149 (469)
.++.||.|.||||+.|+.|++.|.++- .++..+.
T Consensus 3 ~~kikVaIlGATGyvG~elirLL~~HP~~ei~~l~ 37 (183)
T d2cvoa1 3 GEEVRIAVLGASGYTGAEIVRLLANHPQFRIKVMT 37 (183)
T ss_dssp SSCEEEEEESCSSHHHHHHHHHHTTCSSEEEEEEE
T ss_pred CCccEEEEECcccHHHHHHHHHHHhCCCceEEEEe
Confidence 567799999999999999999999874 3665554
|
| >d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Probab=95.51 E-value=0.017 Score=45.87 Aligned_cols=58 Identities=17% Similarity=0.182 Sum_probs=41.6
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCC---CChhHHHHHHHhhccCCeEEE
Q 012176 117 NGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSY---YDPSLKRARQKLLQKHQVFIV 175 (469)
Q Consensus 117 ~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~---~~~~~~~~~~~~~~~~~v~~v 175 (469)
-.++++|.|| |+||-.++..|.+.|.+|+++.+.+.- .++.........+...++.+.
T Consensus 25 ~p~~vvIiGg-G~IG~E~A~~~~~~G~~Vtive~~~~il~~~d~~~~~~l~~~l~~~gv~~~ 85 (125)
T d1ojta2 25 VPGKLLIIGG-GIIGLEMGTVYSTLGSRLDVVEMMDGLMQGADRDLVKVWQKQNEYRFDNIM 85 (125)
T ss_dssp CCSEEEEESC-SHHHHHHHHHHHHHTCEEEEECSSSSSSTTSCHHHHHHHHHHHGGGEEEEE
T ss_pred cCCeEEEECC-CHHHHHHHHHhhcCCCEEEEEEeeccccccchhhHHHHHHHHHHHcCcccc
Confidence 3478999997 999999999999999999999886643 344444444444444444433
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=95.50 E-value=0.026 Score=47.33 Aligned_cols=76 Identities=20% Similarity=0.230 Sum_probs=46.4
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEE-EeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHH---HHHhhcc
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLG-LDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPL---LTKLFDV 191 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~-~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~---l~~~~~~ 191 (469)
..+.+|+|.|+ |.||...++.+...|.++++ +++.+ . +......+. -.+++ |..+++. +.++..+
T Consensus 27 ~~g~~VlI~G~-G~iG~~~~~~ak~~g~~~v~~~~~~~-----~-k~~~a~~~G--a~~~i--~~~~~~~~~~i~~~t~g 95 (174)
T d1f8fa2 27 TPASSFVTWGA-GAVGLSALLAAKVCGASIIIAVDIVE-----S-RLELAKQLG--ATHVI--NSKTQDPVAAIKEITDG 95 (174)
T ss_dssp CTTCEEEEESC-SHHHHHHHHHHHHHTCSEEEEEESCH-----H-HHHHHHHHT--CSEEE--ETTTSCHHHHHHHHTTS
T ss_pred CCCCEEEEeCC-CHHHhhhhhcccccccceeeeeccHH-----H-HHHHHHHcC--CeEEE--eCCCcCHHHHHHHHcCC
Confidence 45778999997 99999999999888886654 45422 1 111111111 12333 4444333 3333333
Q ss_pred CCccEEEEcccc
Q 012176 192 VPFTHVLHLAAQ 203 (469)
Q Consensus 192 ~~~d~Vih~Aa~ 203 (469)
++|+||.+.|.
T Consensus 96 -g~D~vid~~G~ 106 (174)
T d1f8fa2 96 -GVNFALESTGS 106 (174)
T ss_dssp -CEEEEEECSCC
T ss_pred -CCcEEEEcCCc
Confidence 68999999985
|
| >d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=95.46 E-value=0.011 Score=46.79 Aligned_cols=37 Identities=19% Similarity=0.287 Sum_probs=32.9
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCC
Q 012176 118 GMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYY 155 (469)
Q Consensus 118 ~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~ 155 (469)
.++++|.|| |+||-.++..|.+.|.+|+++.|.+...
T Consensus 25 p~~~viiG~-G~iglE~A~~~~~~G~~Vtvi~~~~~~l 61 (123)
T d1dxla2 25 PKKLVVIGA-GYIGLEMGSVWGRIGSEVTVVEFASEIV 61 (123)
T ss_dssp CSEEEESCC-SHHHHHHHHHHHHHTCEEEEECSSSSSS
T ss_pred CCeEEEEcc-chHHHHHHHHHHhcCCeEEEEEEccccC
Confidence 478999997 9999999999999999999999877543
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=95.38 E-value=0.057 Score=45.20 Aligned_cols=78 Identities=15% Similarity=0.075 Sum_probs=49.4
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCC-cEEEEeCCCCCCChhHHHHHHHhhccCCeE-EEEecCC--CHHHHHHhhcc
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGD-GVLGLDNFNSYYDPSLKRARQKLLQKHQVF-IVEGDLN--DAPLLTKLFDV 191 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~-~v~~Dl~--d~~~l~~~~~~ 191 (469)
..+.+|+|+|+ |.||...++.+...|. .|++.++++. +.+...+ -+.. ++...-. ..+.+.+...+
T Consensus 27 ~~G~~VlV~G~-G~iGl~a~~~ak~~Ga~~Vi~~d~~~~-----r~~~a~~----~Ga~~~i~~~~~~~~~~~~~~~~~~ 96 (174)
T d1e3ia2 27 TPGSTCAVFGL-GCVGLSAIIGCKIAGASRIIAIDINGE-----KFPKAKA----LGATDCLNPRELDKPVQDVITELTA 96 (174)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGG-----GHHHHHH----TTCSEEECGGGCSSCHHHHHHHHHT
T ss_pred CCCCEEEEECC-ChHHHHHHHHHHHhCCceeeeeccchH-----HHHHHHH----hCCCcccCCccchhhhhhhHhhhhc
Confidence 46779999986 9999999999999998 5667776432 1111111 1222 2221111 22334445555
Q ss_pred CCccEEEEcccc
Q 012176 192 VPFTHVLHLAAQ 203 (469)
Q Consensus 192 ~~~d~Vih~Aa~ 203 (469)
.++|+||.+.|.
T Consensus 97 ~G~d~vie~~G~ 108 (174)
T d1e3ia2 97 GGVDYSLDCAGT 108 (174)
T ss_dssp SCBSEEEESSCC
T ss_pred CCCcEEEEeccc
Confidence 678999999986
|
| >d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Haemophilus influenzae [TaxId: 727]
Probab=95.13 E-value=0.03 Score=46.87 Aligned_cols=74 Identities=16% Similarity=0.147 Sum_probs=49.0
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCcc
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFT 195 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~d 195 (469)
.++++|+|.|+ |..|+.++..|.+.+.+|+++.|+.+ ..+...........+....-|-. .+. .+|
T Consensus 16 ~~~k~vlIlGa-GGaarai~~aL~~~~~~i~I~nR~~~----~a~~l~~~~~~~~~~~~~~~~~~-------~~~--~~d 81 (171)
T d1p77a1 16 RPNQHVLILGA-GGATKGVLLPLLQAQQNIVLANRTFS----KTKELAERFQPYGNIQAVSMDSI-------PLQ--TYD 81 (171)
T ss_dssp CTTCEEEEECC-SHHHHTTHHHHHHTTCEEEEEESSHH----HHHHHHHHHGGGSCEEEEEGGGC-------CCS--CCS
T ss_pred CCCCEEEEECC-cHHHHHHHHHHcccCceeeeccchHH----HHHHHHHHHhhccccchhhhccc-------ccc--ccc
Confidence 57889999996 88999999999998899999999542 12222222222334555543321 123 449
Q ss_pred EEEEcccc
Q 012176 196 HVLHLAAQ 203 (469)
Q Consensus 196 ~Vih~Aa~ 203 (469)
+|||+...
T Consensus 82 iiIN~tp~ 89 (171)
T d1p77a1 82 LVINATSA 89 (171)
T ss_dssp EEEECCCC
T ss_pred eeeecccc
Confidence 99999754
|
| >d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.97 E-value=0.049 Score=43.64 Aligned_cols=69 Identities=20% Similarity=0.110 Sum_probs=46.4
Q ss_pred EEEEEcCCChhHHHHHHHHHHC-CCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCccEEE
Q 012176 120 TVLVTGAAGFVGSHCSLALKKR-GDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTHVL 198 (469)
Q Consensus 120 ~VlVtGatG~IG~~l~~~L~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~d~Vi 198 (469)
||.|+|++|-+|+.+++.+.+. +.++.+..- ..+. +. .+...++|+||
T Consensus 1 kI~v~Ga~GrMG~~i~~~i~~~~~~~l~~~~d----------------------------~~~~--~~-~~~~~~~DvvI 49 (135)
T d1yl7a1 1 RVGVLGAKGKVGATMVRAVAAADDLTLSAELD----------------------------AGDP--LS-LLTDGNTEVVI 49 (135)
T ss_dssp EEEEETTTSHHHHHHHHHHHHSTTSEEEEEEC----------------------------TTCC--TH-HHHTTTCSEEE
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCEEEEEEe----------------------------cCCc--hh-hhccccCCEEE
Confidence 6899999999999999988775 556554321 1111 11 11223459999
Q ss_pred EcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCC
Q 012176 199 HLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQ 237 (469)
Q Consensus 199 h~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~ 237 (469)
+..-.. .+...++.|.+.|..
T Consensus 50 DFS~p~------------------~~~~~~~~~~~~~~~ 70 (135)
T d1yl7a1 50 DFTHPD------------------VVMGNLEFLIDNGIH 70 (135)
T ss_dssp ECCCTT------------------THHHHHHHHHHTTCE
T ss_pred EcccHH------------------HHHHHHHHHHhcCCC
Confidence 987542 356788899999874
|
| >d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Alpha-glucosidase AglA species: Thermotoga maritima [TaxId: 2336]
Probab=94.87 E-value=0.041 Score=46.02 Aligned_cols=118 Identities=18% Similarity=0.134 Sum_probs=66.1
Q ss_pred CCEEEEEcCCChhHHH--HHHHHHHC----CCcEEEEeCCCCCCChhHHHHHHHhh--ccCCeEEEEecCCCHHHHHHhh
Q 012176 118 GMTVLVTGAAGFVGSH--CSLALKKR----GDGVLGLDNFNSYYDPSLKRARQKLL--QKHQVFIVEGDLNDAPLLTKLF 189 (469)
Q Consensus 118 ~~~VlVtGatG~IG~~--l~~~L~~~----G~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~v~~v~~Dl~d~~~l~~~~ 189 (469)
+|||.|.|| |.+|.. ++..|+.. +.+++.+|++++....... ...... .....++... .+.++++
T Consensus 2 ~mKI~iIGa-Gsvg~t~~~~~~l~~~~~l~~~eivL~Did~~~~~~~~~-~~~~~~~~~~~~~~i~~~-----td~~eaL 74 (171)
T d1obba1 2 SVKIGIIGA-GSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILT-IAKKYVEEVGADLKFEKT-----MNLDDVI 74 (171)
T ss_dssp CCEEEEETT-TCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHH-HHHHHHHHTTCCCEEEEE-----SCHHHHH
T ss_pred CcEEEEECC-CHHHhHHHHHHHHHhccccCCCEEEEEeCCchHHHHHHH-HHHHHHHhcCCCeEEEEe-----CChhhcc
Confidence 478999997 888865 34445443 4699999985431111000 011111 1123333322 2356678
Q ss_pred ccCCccEEEEcccccChhhhccChH------------------------HHHHHHHHHHHHHHHHHHhcCCCCeEEEEc
Q 012176 190 DVVPFTHVLHLAAQAGVRYAMQNPQ------------------------SYVASNIAGFVNLLEVCKSVNPQPSIVWAS 244 (469)
Q Consensus 190 ~~~~~d~Vih~Aa~~~~~~~~~~~~------------------------~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~S 244 (469)
+++ |+||..++..+......+.. .....|+.-.+.+++.+++......+|.+|
T Consensus 75 ~da--d~Vv~~~~~g~~~~~~~~~~i~~~~g~~~~~~~~~~~~~g~~~~~~~~rn~~i~~~i~~~i~~~~p~a~~i~~T 151 (171)
T d1obba1 75 IDA--DFVINTAMVGGHTYLEKVRQIGEKYGYYRGIDAQEFNMVSDYYTFSNYNQLKYFVDIARKIEKLSPKAWYLQAA 151 (171)
T ss_dssp TTC--SEEEECCCTTHHHHHHHHHHHHHHTTCTTCTTCBTTBCCTTCCSSSCHHHHHHHHHHHHHHHHHCTTCEEEECS
T ss_pred cCC--CeEeeecccccccceeeehhcchhhhhccCCCccccCCCCCcceeeecchHHHHHHHHHHHHHHCcCeEEEEEC
Confidence 888 99999987632211100000 001247888889999988888775666666
|
| >d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Rhodotorula gracilis [TaxId: 5286]
Probab=94.82 E-value=0.017 Score=50.81 Aligned_cols=35 Identities=29% Similarity=0.386 Sum_probs=31.9
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCC
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNF 151 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~ 151 (469)
.+.++|+|+|| |..|-..+..|.++|++|++++|.
T Consensus 4 ~~~~kVvVIGa-GiaGl~~A~~L~~~G~~V~vier~ 38 (268)
T d1c0pa1 4 HSQKRVVVLGS-GVIGLSSALILARKGYSVHILARD 38 (268)
T ss_dssp CCSCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESS
T ss_pred CCCCcEEEECc-cHHHHHHHHHHHHCCCCEEEEeCC
Confidence 45678999997 999999999999999999999984
|
| >d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Haemophilus influenzae [TaxId: 727]
Probab=94.82 E-value=0.18 Score=37.59 Aligned_cols=71 Identities=18% Similarity=0.108 Sum_probs=47.7
Q ss_pred CCCCEEEEEcCCChhH-HHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCc
Q 012176 116 PNGMTVLVTGAAGFVG-SHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPF 194 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG-~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~ 194 (469)
...++|.+.|- |.+| +.||+.|.++|++|.+.|+... + ....+...++.+..++- ++ .+++.
T Consensus 6 ~~~~~ihfiGi-gG~GMs~LA~~L~~~G~~VsGSD~~~~---~-----~~~~L~~~Gi~v~~g~~--~~----~i~~~-- 68 (96)
T d1p3da1 6 RRVQQIHFIGI-GGAGMSGIAEILLNEGYQISGSDIADG---V-----VTQRLAQAGAKIYIGHA--EE----HIEGA-- 68 (96)
T ss_dssp TTCCEEEEETT-TSTTHHHHHHHHHHHTCEEEEEESCCS---H-----HHHHHHHTTCEEEESCC--GG----GGTTC--
T ss_pred hhCCEEEEEEE-CHHHHHHHHHHHHhCCCEEEEEeCCCC---h-----hhhHHHHCCCeEEECCc--cc----cCCCC--
Confidence 45678999886 4455 7789999999999999998543 1 11222234777776553 22 23444
Q ss_pred cEEEEcccc
Q 012176 195 THVLHLAAQ 203 (469)
Q Consensus 195 d~Vih~Aa~ 203 (469)
|.||...|.
T Consensus 69 d~vV~S~AI 77 (96)
T d1p3da1 69 SVVVVSSAI 77 (96)
T ss_dssp SEEEECTTS
T ss_pred CEEEECCCc
Confidence 989888876
|
| >d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Trypanosome (Leishmania mexicana) [TaxId: 5665]
Probab=94.72 E-value=0.0092 Score=51.12 Aligned_cols=78 Identities=14% Similarity=0.140 Sum_probs=48.6
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhc---cCCeEEEEecCCCHHHHHHhhccC
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQ---KHQVFIVEGDLNDAPLLTKLFDVV 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~---~~~v~~v~~Dl~d~~~l~~~~~~~ 192 (469)
+.+++|.|.|| |..|.+++..|.+.||+|++.+|+.+ ........... .+++.. .-++.-..+++++++++
T Consensus 5 ~~m~KI~ViGa-G~wGtAlA~~La~~g~~V~l~~r~~~----~~~~i~~~~~n~~yl~~~~l-~~~i~~t~~l~~a~~~a 78 (189)
T d1n1ea2 5 LYLNKAVVFGS-GAFGTALAMVLSKKCREVCVWHMNEE----EVRLVNEKRENVLFLKGVQL-ASNITFTSDVEKAYNGA 78 (189)
T ss_dssp CCEEEEEEECC-SHHHHHHHHHHHTTEEEEEEECSCHH----HHHHHHHHTBCTTTSTTCBC-CTTEEEESCHHHHHTTC
T ss_pred ceeceEEEECC-CHHHHHHHHHHHHcCCeEEEEEecHH----HHHHHhhccccccccccccc-ccccccchhhhhccCCC
Confidence 45568999996 99999999999999999999998542 11111111100 011111 01111123477788888
Q ss_pred CccEEEEcc
Q 012176 193 PFTHVLHLA 201 (469)
Q Consensus 193 ~~d~Vih~A 201 (469)
|+||-+.
T Consensus 79 --d~iiiav 85 (189)
T d1n1ea2 79 --EIILFVI 85 (189)
T ss_dssp --SCEEECS
T ss_pred --CEEEEcC
Confidence 9998765
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=94.72 E-value=0.015 Score=48.36 Aligned_cols=77 Identities=16% Similarity=0.180 Sum_probs=55.8
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCccE
Q 012176 117 NGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTH 196 (469)
Q Consensus 117 ~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~d~ 196 (469)
..-+|+|.|| |-.|..-++.+.+.|.+|+++|.+.+ .+++. .... ...++.. ..+.+.+++.++.+ |+
T Consensus 31 ~pa~V~ViGa-GvaG~~A~~~A~~lGA~V~~~D~~~~----~l~~l-~~~~-~~~~~~~---~~~~~~l~~~~~~a--Di 98 (168)
T d1pjca1 31 KPGKVVILGG-GVVGTEAAKMAVGLGAQVQIFDINVE----RLSYL-ETLF-GSRVELL---YSNSAEIETAVAEA--DL 98 (168)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHH----HHHHH-HHHH-GGGSEEE---ECCHHHHHHHHHTC--SE
T ss_pred CCcEEEEECC-ChHHHHHHHHHhhCCCEEEEEeCcHH----HHHHH-HHhh-cccceee---hhhhhhHHHhhccC--cE
Confidence 3468999997 99999999999999999999998432 12111 1111 1234444 34588899999988 99
Q ss_pred EEEcccccC
Q 012176 197 VLHLAAQAG 205 (469)
Q Consensus 197 Vih~Aa~~~ 205 (469)
||.++-..+
T Consensus 99 vI~aalipG 107 (168)
T d1pjca1 99 LIGAVLVPG 107 (168)
T ss_dssp EEECCCCTT
T ss_pred EEEeeecCC
Confidence 999986543
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=94.70 E-value=0.051 Score=45.23 Aligned_cols=79 Identities=16% Similarity=0.131 Sum_probs=48.4
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCC-cEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCc
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGD-GVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPF 194 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~ 194 (469)
..+.+|+|.|+ |.+|...++.+...|. .|++++++++ +....+ +....+++..+-.+.+.+.+...+.++
T Consensus 31 ~~g~~vli~Ga-G~vG~~~~~~a~~~g~~~vv~~~~~~~------k~~~~~--~~ga~~~i~~~~~~~~~~~~~~~~~g~ 101 (172)
T d1h2ba2 31 YPGAYVAIVGV-GGLGHIAVQLLKVMTPATVIALDVKEE------KLKLAE--RLGADHVVDARRDPVKQVMELTRGRGV 101 (172)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHHCCCEEEEEESSHH------HHHHHH--HTTCSEEEETTSCHHHHHHHHTTTCCE
T ss_pred CCCCEEEEeCC-ChHHHHHHHHHHhhcCcccccccchhH------HHHHHh--hcccceeecCcccHHHHHHHhhCCCCc
Confidence 35678999986 9999999999888886 5566666321 111111 111234443332233444555555578
Q ss_pred cEEEEcccc
Q 012176 195 THVLHLAAQ 203 (469)
Q Consensus 195 d~Vih~Aa~ 203 (469)
|+||.++|.
T Consensus 102 d~vid~~g~ 110 (172)
T d1h2ba2 102 NVAMDFVGS 110 (172)
T ss_dssp EEEEESSCC
T ss_pred eEEEEecCc
Confidence 999999985
|
| >d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Escherichia coli [TaxId: 562]
Probab=94.58 E-value=0.0081 Score=50.12 Aligned_cols=96 Identities=21% Similarity=0.226 Sum_probs=55.7
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHC-CCcEEE-EeCCCCCCChhHHHHHHHhhc--cCCeEEEEecCCCHHHHHHhhccC
Q 012176 117 NGMTVLVTGAAGFVGSHCSLALKKR-GDGVLG-LDNFNSYYDPSLKRARQKLLQ--KHQVFIVEGDLNDAPLLTKLFDVV 192 (469)
Q Consensus 117 ~~~~VlVtGatG~IG~~l~~~L~~~-G~~V~~-~~r~~~~~~~~~~~~~~~~~~--~~~v~~v~~Dl~d~~~l~~~~~~~ 192 (469)
+.++|.|.|++|-+|+.+++.+.+. +.++.+ ++|........ ....... ..++.+ . ..++.+++.+
T Consensus 3 s~ikI~i~Ga~GrMG~~i~~~i~~~~~~~lv~~~~~~~~~~~g~---d~~~~~~~~~~~~~~-~------~~~~~~~~~~ 72 (162)
T d1diha1 3 ANIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGS---DAGELAGAGKTGVTV-Q------SSLDAVKDDF 72 (162)
T ss_dssp CBEEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCTTCSC---CTTCSSSSSCCSCCE-E------SCSTTTTTSC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecccchhccc---hhhhhhccccCCcee-e------ccHHHHhccc
Confidence 4578999999999999999999887 555543 34432211000 0000000 001111 1 1233455555
Q ss_pred CccEEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEc
Q 012176 193 PFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWAS 244 (469)
Q Consensus 193 ~~d~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~S 244 (469)
|+||...- -.++...+++|.++++. +|.-+
T Consensus 73 --DViIDFs~------------------p~~~~~~~~~a~~~~~~--~ViGT 102 (162)
T d1diha1 73 --DVFIDFTR------------------PEGTLNHLAFCRQHGKG--MVIGT 102 (162)
T ss_dssp --SEEEECSC------------------HHHHHHHHHHHHHTTCE--EEECC
T ss_pred --ceEEEecc------------------HHHHHHHHHHHHhccce--eEEec
Confidence 99999863 23567888999999874 55333
|
| >d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Putative formate dehydrogenase species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=94.56 E-value=0.038 Score=46.70 Aligned_cols=38 Identities=26% Similarity=0.319 Sum_probs=34.3
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCC
Q 012176 115 RPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNS 153 (469)
Q Consensus 115 ~~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~ 153 (469)
...+++|.|.|. |-||+.+++.|..-|.+|++.+|...
T Consensus 39 ~l~gk~vgIiG~-G~IG~~va~~l~~~g~~v~~~d~~~~ 76 (181)
T d1qp8a1 39 LIQGEKVAVLGL-GEIGTRVGKILAALGAQVRGFSRTPK 76 (181)
T ss_dssp CCTTCEEEEESC-STHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred cccCceEEEecc-ccccccceeeeecccccccccccccc
Confidence 367899999995 99999999999999999999998664
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=94.54 E-value=0.1 Score=42.99 Aligned_cols=33 Identities=30% Similarity=0.538 Sum_probs=28.5
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHCCC--cEEEEeCC
Q 012176 118 GMTVLVTGAAGFVGSHCSLALKKRGD--GVLGLDNF 151 (469)
Q Consensus 118 ~~~VlVtGatG~IG~~l~~~L~~~G~--~V~~~~r~ 151 (469)
+|+|+|.|. |.||..+++.|.+.|+ +|++.+++
T Consensus 1 Mk~I~IIG~-G~mG~sla~~L~~~g~~~~I~~~D~~ 35 (171)
T d2g5ca2 1 MQNVLIVGV-GFMGGSFAKSLRRSGFKGKIYGYDIN 35 (171)
T ss_dssp CCEEEEESC-SHHHHHHHHHHHHTTCCSEEEEECSC
T ss_pred CCEEEEEcc-CHHHHHHHHHHHhcCCCeEEEEEECC
Confidence 357999985 9999999999999996 68888874
|
| >d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Thermotoga maritima [TaxId: 2336]
Probab=94.48 E-value=0.17 Score=37.11 Aligned_cols=68 Identities=24% Similarity=0.236 Sum_probs=45.8
Q ss_pred CEEEEEcCCChhH-HHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCccEE
Q 012176 119 MTVLVTGAAGFVG-SHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTHV 197 (469)
Q Consensus 119 ~~VlVtGatG~IG-~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~d~V 197 (469)
|+|-++|- |.+| +.||+.|.++|+.|.+.|+... .....++..++.+..+. +++. +++. |.|
T Consensus 2 ~~ihfiGI-gG~GMs~LA~~L~~~G~~VsGSD~~~~--------~~t~~L~~~Gi~i~~gh--~~~~----i~~~--d~v 64 (89)
T d1j6ua1 2 MKIHFVGI-GGIGMSAVALHEFSNGNDVYGSNIEET--------ERTAYLRKLGIPIFVPH--SADN----WYDP--DLV 64 (89)
T ss_dssp CEEEEETT-TSHHHHHHHHHHHHTTCEEEEECSSCC--------HHHHHHHHTTCCEESSC--CTTS----CCCC--SEE
T ss_pred cEEEEEeE-CHHHHHHHHHHHHhCCCeEEEEeCCCC--------hhHHHHHHCCCeEEeee--cccc----cCCC--CEE
Confidence 78888886 4444 4789999999999999998543 12222445577766542 2222 2444 999
Q ss_pred EEcccc
Q 012176 198 LHLAAQ 203 (469)
Q Consensus 198 ih~Aa~ 203 (469)
|...|.
T Consensus 65 V~SsAI 70 (89)
T d1j6ua1 65 IKTPAV 70 (89)
T ss_dssp EECTTC
T ss_pred EEecCc
Confidence 998886
|
| >d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC species: Thermotoga maritima [TaxId: 2336]
Probab=94.42 E-value=0.03 Score=47.13 Aligned_cols=32 Identities=22% Similarity=0.264 Sum_probs=26.4
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHCC-CcEEEEe
Q 012176 118 GMTVLVTGAAGFVGSHCSLALKKRG-DGVLGLD 149 (469)
Q Consensus 118 ~~~VlVtGatG~IG~~l~~~L~~~G-~~V~~~~ 149 (469)
+++|.|.||||++|..|++.|.++- .++..+.
T Consensus 1 MikVaIvGATGyvG~eLirlL~~HP~~ei~~l~ 33 (176)
T d1vkna1 1 MIRAGIIGATGYTGLELVRLLKNHPEAKITYLS 33 (176)
T ss_dssp CEEEEEESTTSHHHHHHHHHHHHCTTEEEEEEE
T ss_pred CeEEEEECCCcHHHHHHHHHHHhCCCceEEEee
Confidence 4689999999999999999998874 3665554
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=94.37 E-value=0.083 Score=43.43 Aligned_cols=75 Identities=21% Similarity=0.187 Sum_probs=46.5
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCC-C-HHHHHHhhccCC
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLN-D-APLLTKLFDVVP 193 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~-d-~~~l~~~~~~~~ 193 (469)
..+.+|+|.|+ |-||...++.+...|++|++++++++ +......-+...+..... | .+.+.+...+.
T Consensus 26 ~~g~~vlv~G~-G~iG~~a~~~a~~~g~~v~~~~~~~~---------r~~~~k~~Ga~~~~~~~~~~~~~~~~~~~~~~- 94 (168)
T d1rjwa2 26 KPGEWVAIYGI-GGLGHVAVQYAKAMGLNVVAVDIGDE---------KLELAKELGADLVVNPLKEDAAKFMKEKVGGV- 94 (168)
T ss_dssp CTTCEEEEECC-STTHHHHHHHHHHTTCEEEEECSCHH---------HHHHHHHTTCSEEECTTTSCHHHHHHHHHSSE-
T ss_pred CCCCEEEEeec-ccchhhhhHHHhcCCCeEeccCCCHH---------HhhhhhhcCcceecccccchhhhhcccccCCC-
Confidence 35678999875 99999999999999999999987332 222222234444433222 2 23344444444
Q ss_pred ccEEEEccc
Q 012176 194 FTHVLHLAA 202 (469)
Q Consensus 194 ~d~Vih~Aa 202 (469)
+.+|.+++
T Consensus 95 -~~~v~~~~ 102 (168)
T d1rjwa2 95 -HAAVVTAV 102 (168)
T ss_dssp -EEEEESSC
T ss_pred -ceEEeecC
Confidence 66666665
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=94.28 E-value=0.046 Score=45.55 Aligned_cols=78 Identities=14% Similarity=0.096 Sum_probs=45.4
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCc-EEEEeCCCCCCChhHHHHHHHhhccCCeE-EEEe-c-CCCHHHHHHhhcc
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDG-VLGLDNFNSYYDPSLKRARQKLLQKHQVF-IVEG-D-LNDAPLLTKLFDV 191 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~v~-~v~~-D-l~d~~~l~~~~~~ 191 (469)
..+.+|+|.|+ |.+|...++.+...|.. |+++++++. +.+.... + +.. ++.. + -.+.+...+...+
T Consensus 27 ~~G~tVlI~Ga-GGvG~~aiq~ak~~G~~~vi~~~~~~~-----k~~~ak~-l---Ga~~~i~~~~~~~~~~~~~~~~~~ 96 (176)
T d2fzwa2 27 EPGSVCAVFGL-GGVGLAVIMGCKVAGASRIIGVDINKD-----KFARAKE-F---GATECINPQDFSKPIQEVLIEMTD 96 (176)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECSCGG-----GHHHHHH-H---TCSEEECGGGCSSCHHHHHHHHTT
T ss_pred CCCCEEEEecc-hhHHHHHHHHHHHHhcCceEEEcccHH-----HHHHHHH-h---CCcEEEeCCchhhHHHHHHHHHcC
Confidence 46789999998 67999999999999965 555555322 1111111 1 222 2211 1 1222223333334
Q ss_pred CCccEEEEcccc
Q 012176 192 VPFTHVLHLAAQ 203 (469)
Q Consensus 192 ~~~d~Vih~Aa~ 203 (469)
.++|+||.+.|.
T Consensus 97 ~g~D~vid~~G~ 108 (176)
T d2fzwa2 97 GGVDYSFECIGN 108 (176)
T ss_dssp SCBSEEEECSCC
T ss_pred CCCcEeeecCCC
Confidence 467999999975
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=94.23 E-value=0.058 Score=44.99 Aligned_cols=78 Identities=15% Similarity=0.144 Sum_probs=48.3
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCC-CcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEE--ecCCC-HHHHHHhhcc
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRG-DGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVE--GDLND-APLLTKLFDV 191 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~--~Dl~d-~~~l~~~~~~ 191 (469)
..+.+|+|.|+ |.+|...+..+...| .+|++++++++ +.+..... +...+. .|..| .+...+...+
T Consensus 27 k~GdtVlV~Ga-GG~G~~~~~~~~~~g~~~Vi~~~~~~~-----k~~~a~~~----Ga~~~i~~~~~~~~~~~~~~~~~~ 96 (176)
T d2jhfa2 27 TQGSTCAVFGL-GGVGLSVIMGCKAAGAARIIGVDINKD-----KFAKAKEV----GATECVNPQDYKKPIQEVLTEMSN 96 (176)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGG-----GHHHHHHT----TCSEEECGGGCSSCHHHHHHHHTT
T ss_pred CCCCEEEEECC-CCcHHHHHHHHHHcCCceEEeecCcHH-----HHHHHHHh----CCeeEEecCCchhHHHHHHHHHhc
Confidence 56789999998 679999999999997 47888887443 11111111 222221 22222 2333344444
Q ss_pred CCccEEEEcccc
Q 012176 192 VPFTHVLHLAAQ 203 (469)
Q Consensus 192 ~~~d~Vih~Aa~ 203 (469)
-++|+||.+.|.
T Consensus 97 ~G~D~vid~~G~ 108 (176)
T d2jhfa2 97 GGVDFSFEVIGR 108 (176)
T ss_dssp SCBSEEEECSCC
T ss_pred CCCCEEEecCCc
Confidence 467999999986
|
| >d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Maltose-6'-phosphate glucosidase GlvA species: Bacillus subtilis [TaxId: 1423]
Probab=94.20 E-value=0.18 Score=41.67 Aligned_cols=116 Identities=14% Similarity=0.139 Sum_probs=62.0
Q ss_pred CCEEEEEcCCChhHHH-HHHHHHHC-----CCcEEEEeCCCCCCChhHHHHHHHhh--ccCCeEEEEecCCCHHHHHHhh
Q 012176 118 GMTVLVTGAAGFVGSH-CSLALKKR-----GDGVLGLDNFNSYYDPSLKRARQKLL--QKHQVFIVEGDLNDAPLLTKLF 189 (469)
Q Consensus 118 ~~~VlVtGatG~IG~~-l~~~L~~~-----G~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~v~~v~~Dl~d~~~l~~~~ 189 (469)
..+|.|.|| |.+|.. ++..|+.+ +.+|++.|.+++..... ........ ......+... .+..+++
T Consensus 3 ~~KI~iIGa-Gsv~~~~~~~~ll~~~~~l~~~eivL~Did~~~~~~~-~~~~~~~~~~~~~~~~~~~~-----~d~~eal 75 (167)
T d1u8xx1 3 SFSIVIAGG-GSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRI-AGACDVFIREKAPDIEFAAT-----TDPEEAF 75 (167)
T ss_dssp CEEEEEECT-TSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHH-HHHHHHHHHHHCTTSEEEEE-----SCHHHHH
T ss_pred CceEEEECC-ChhhhHHHHHHHHhhhhhcCCCEEEEEcCChhHHHHH-HHHHHHHHHHhCCCcceEec-----CChhhcc
Confidence 457999998 545544 44555543 24899998754321100 00111111 1123333322 1256778
Q ss_pred ccCCccEEEEcccccChhhhccChHHHH--------------------HHHHHHHHHHHHHHHhcCCCCeEEEEc
Q 012176 190 DVVPFTHVLHLAAQAGVRYAMQNPQSYV--------------------ASNIAGFVNLLEVCKSVNPQPSIVWAS 244 (469)
Q Consensus 190 ~~~~~d~Vih~Aa~~~~~~~~~~~~~~~--------------------~~Nv~~~~~ll~aa~~~~~~~~~V~~S 244 (469)
+++ |+||..++...... ...++.. -.|+.-.+.+++..++......++.+|
T Consensus 76 ~~A--D~Vvitag~~~~~g--~~rd~~i~~~~Gi~~~~t~g~gg~~~~~r~i~ii~~i~~~i~~~~P~A~li~~T 146 (167)
T d1u8xx1 76 TDV--DFVMAHIRVGKYAM--RALDEQIPLKYGVVGQETCGPGGIAYGMRSIGGVLEILDYMEKYSPDAWMLNYS 146 (167)
T ss_dssp SSC--SEEEECCCTTHHHH--HHHHHHHHHTTTCCCCSSSHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECC
T ss_pred CCC--CEEEECCCcCCCCc--eeHHHhhchhcCceeeccccCcchheehhhHHHHHHHHHHHHhhCCCeEEEEeC
Confidence 888 99999998733211 1111111 234566677777777777765677666
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=94.17 E-value=0.1 Score=44.47 Aligned_cols=77 Identities=21% Similarity=0.138 Sum_probs=50.4
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCC-cEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCH---HHHHHhhcc
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGD-GVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDA---PLLTKLFDV 191 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~---~~l~~~~~~ 191 (469)
..+.+|+|.|+ |.+|...++.+...|. +|+++++.++ +......-+...+. |-.+. +.+.++..+
T Consensus 24 ~~G~tVlV~Ga-G~vGl~a~~~ak~~ga~~Vi~~d~~~~---------rl~~a~~~Ga~~~~-~~~~~~~~~~i~~~t~g 92 (195)
T d1kola2 24 GPGSTVYVAGA-GPVGLAAAASARLLGAAVVIVGDLNPA---------RLAHAKAQGFEIAD-LSLDTPLHEQIAALLGE 92 (195)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEESCHH---------HHHHHHHTTCEEEE-TTSSSCHHHHHHHHHSS
T ss_pred CCCCEEEEECc-CHHHHHHHHHHHhhcccceeeecccch---------hhHhhhhccccEEE-eCCCcCHHHHHHHHhCC
Confidence 46789999986 9999888888877877 6777776321 22222222454443 33322 345556666
Q ss_pred CCccEEEEcccc
Q 012176 192 VPFTHVLHLAAQ 203 (469)
Q Consensus 192 ~~~d~Vih~Aa~ 203 (469)
.++|++|.+.|.
T Consensus 93 ~g~D~vid~vG~ 104 (195)
T d1kola2 93 PEVDCAVDAVGF 104 (195)
T ss_dssp SCEEEEEECCCT
T ss_pred CCcEEEEECccc
Confidence 678999999985
|
| >d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Trypanosoma brucei [TaxId: 5691]
Probab=94.09 E-value=0.18 Score=41.89 Aligned_cols=33 Identities=27% Similarity=0.402 Sum_probs=30.1
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCC
Q 012176 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFN 152 (469)
Q Consensus 119 ~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~ 152 (469)
|+|-|+| .|.+|..+++.|++.||+|++.+|+.
T Consensus 2 MkIGvIG-lG~MG~~ma~~L~~~G~~V~~~dr~~ 34 (178)
T d1pgja2 2 MDVGVVG-LGVMGANLALNIAEKGFKVAVFNRTY 34 (178)
T ss_dssp BSEEEEC-CSHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred CEEEEEe-ehHHHHHHHHHHHHCCCeEEEEECCH
Confidence 6799998 59999999999999999999999843
|
| >d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase-like protein HI0607 species: Haemophilus influenzae [TaxId: 727]
Probab=94.06 E-value=0.03 Score=46.65 Aligned_cols=35 Identities=20% Similarity=0.167 Sum_probs=30.6
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCC-cEEEEeCCC
Q 012176 117 NGMTVLVTGAAGFVGSHCSLALKKRGD-GVLGLDNFN 152 (469)
Q Consensus 117 ~~~~VlVtGatG~IG~~l~~~L~~~G~-~V~~~~r~~ 152 (469)
.+++|+|.|+ |..|++++..|.+.|. +|+++.|+.
T Consensus 16 ~~~~vlIlGa-GGaarai~~aL~~~g~~~I~I~nR~~ 51 (167)
T d1npya1 16 KNAKVIVHGS-GGMAKAVVAAFKNSGFEKLKIYARNV 51 (167)
T ss_dssp TTSCEEEECS-STTHHHHHHHHHHTTCCCEEEECSCH
T ss_pred CCCeEEEECC-CHHHHHHHHHHHHCCCCEEEEecccH
Confidence 4578999996 9999999999999996 799999843
|
| >d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.02 E-value=0.11 Score=42.76 Aligned_cols=69 Identities=19% Similarity=0.159 Sum_probs=50.0
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCc
Q 012176 115 RPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPF 194 (469)
Q Consensus 115 ~~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~ 194 (469)
...+|+|.|.| .|.||+-+++.|...|.+|++.++.+ .+......+ +..+. .+++++...
T Consensus 21 ~l~Gk~v~V~G-yG~iG~g~A~~~rg~G~~V~v~e~dp-------~~al~A~~d--G~~v~--------~~~~a~~~a-- 80 (163)
T d1li4a1 21 MIAGKVAVVAG-YGDVGKGCAQALRGFGARVIITEIDP-------INALQAAME--GYEVT--------TMDEACQEG-- 80 (163)
T ss_dssp CCTTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSCH-------HHHHHHHHT--TCEEC--------CHHHHTTTC--
T ss_pred eecCCEEEEec-cccccHHHHHHHHhCCCeeEeeeccc-------chhHHhhcC--ceEee--------ehhhhhhhc--
Confidence 37899999999 69999999999999999999998732 222222222 33322 256677777
Q ss_pred cEEEEcccc
Q 012176 195 THVLHLAAQ 203 (469)
Q Consensus 195 d~Vih~Aa~ 203 (469)
|+||-+.|.
T Consensus 81 divvtaTGn 89 (163)
T d1li4a1 81 NIFVTTTGC 89 (163)
T ss_dssp SEEEECSSC
T ss_pred cEEEecCCC
Confidence 888888775
|
| >d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Molybdenum cofactor biosynthesis protein MoeB domain: Molybdenum cofactor biosynthesis protein MoeB species: Escherichia coli [TaxId: 562]
Probab=94.01 E-value=0.35 Score=42.36 Aligned_cols=112 Identities=21% Similarity=0.180 Sum_probs=65.9
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCC-cEEEEeCCCCC----------CCh----hHHHHHHHhh-c-cCCeEEEEecC
Q 012176 117 NGMTVLVTGAAGFVGSHCSLALKKRGD-GVLGLDNFNSY----------YDP----SLKRARQKLL-Q-KHQVFIVEGDL 179 (469)
Q Consensus 117 ~~~~VlVtGatG~IG~~l~~~L~~~G~-~V~~~~r~~~~----------~~~----~~~~~~~~~~-~-~~~v~~v~~Dl 179 (469)
+..+|+|.|+ |.+|++++..|.+.|- +++++|...-. ... .+.......+ + .+.+.+...+.
T Consensus 29 ~~~~VliiG~-GglGs~va~~La~~Gvg~i~lvD~D~Ve~sNL~RQ~l~~~~diG~~K~~~a~~~l~~~np~~~i~~~~~ 107 (247)
T d1jw9b_ 29 KDSRVLIVGL-GGLGCAASQYLASAGVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRINPHIAITPVNA 107 (247)
T ss_dssp HHCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEECS
T ss_pred hCCCEEEECC-CHHHHHHHHHHHHcCCCeEEEECCcccchhhhhhhccccHhhcCchHHHHHHHHHHHhhcccchhhhhh
Confidence 4578999996 9999999999999997 56666522111 000 1111111111 1 23455444443
Q ss_pred -CCHHHHHHhhccCCccEEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcCccccC
Q 012176 180 -NDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYG 250 (469)
Q Consensus 180 -~d~~~l~~~~~~~~~d~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS~~vyg 250 (469)
.+.+.....+... |+||.+.. |...-..+-++|.+.+.. +|+.+..+.+|
T Consensus 108 ~~~~~~~~~~~~~~--divid~~d-----------------~~~~~~~in~~~~~~~ip--~i~g~~~~~~g 158 (247)
T d1jw9b_ 108 LLDDAELAALIAEH--DLVLDCTD-----------------NVAVRNQLNAGCFAAKVP--LVSGAAIRMEG 158 (247)
T ss_dssp CCCHHHHHHHHHTS--SEEEECCS-----------------SHHHHHHHHHHHHHHTCC--EEEEEEEBTEE
T ss_pred hhhhcccccccccc--ceeeeccc-----------------hhhhhhhHHHHHHHhCCC--ccccccccccc
Confidence 2345566677766 99998763 233334556678888874 77765544444
|
| >d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Streptococcus pyogenes [TaxId: 1314]
Probab=93.92 E-value=0.03 Score=45.89 Aligned_cols=33 Identities=18% Similarity=0.146 Sum_probs=30.0
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCC
Q 012176 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFN 152 (469)
Q Consensus 119 ~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~ 152 (469)
|+|.+.|+ |-+|+.+++.|++.|++|++.+|+.
T Consensus 1 MkIg~IG~-G~mG~al~~~l~~~~~~i~v~~r~~ 33 (152)
T d2ahra2 1 MKIGIIGV-GKMASAIIKGLKQTPHELIISGSSL 33 (152)
T ss_dssp CEEEEECC-SHHHHHHHHHHTTSSCEEEEECSSH
T ss_pred CEEEEEec-cHHHHHHHHHHHhCCCeEEEEcChH
Confidence 68999985 9999999999999999999999854
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=93.84 E-value=0.12 Score=42.52 Aligned_cols=35 Identities=23% Similarity=0.190 Sum_probs=31.0
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCC
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNF 151 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~ 151 (469)
..+.+|+|.|+ |.+|...++.+...|.+|++++++
T Consensus 26 ~~g~~VlV~Ga-G~vG~~~~~~ak~~G~~Vi~~~~~ 60 (166)
T d1llua2 26 RPGQWVAISGI-GGLGHVAVQYARAMGLHVAAIDID 60 (166)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESC
T ss_pred CCCCEEEEeec-cccHHHHHHHHHHcCCccceecch
Confidence 45779999886 999999999999999999999984
|
| >d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Dihydroxypyridine hydroxylase DhpH species: Arthrobacter nicotinovorans [TaxId: 29320]
Probab=93.77 E-value=0.042 Score=48.48 Aligned_cols=37 Identities=22% Similarity=0.287 Sum_probs=32.8
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCC
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNS 153 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~ 153 (469)
...+||+|+|| |..|..++..|.++|++|+++.|...
T Consensus 2 ~~~~kV~IiGa-G~aGl~~A~~L~~~G~~v~v~Er~~~ 38 (265)
T d2voua1 2 PTTDRIAVVGG-SISGLTAALMLRDAGVDVDVYERSPQ 38 (265)
T ss_dssp CCCSEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred CCCCcEEEECc-CHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence 35578999997 99999999999999999999998554
|
| >d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Crithidia fasciculata [TaxId: 5656]
Probab=93.63 E-value=0.1 Score=40.21 Aligned_cols=59 Identities=15% Similarity=0.215 Sum_probs=40.9
Q ss_pred CCEEEEEcCCChhHHHHHHHHHH---CCCcEEEEeCCCCC---CChhHHHHHHHhhccCCeEEEEe
Q 012176 118 GMTVLVTGAAGFVGSHCSLALKK---RGDGVLGLDNFNSY---YDPSLKRARQKLLQKHQVFIVEG 177 (469)
Q Consensus 118 ~~~VlVtGatG~IG~~l~~~L~~---~G~~V~~~~r~~~~---~~~~~~~~~~~~~~~~~v~~v~~ 177 (469)
.++++|.|| |++|-.++..|.+ .|.+|+++.|.+.- .++.........+...+++++..
T Consensus 18 p~~v~IiGg-G~ig~E~A~~l~~~~~~g~~Vtli~~~~~il~~~d~~~~~~~~~~l~~~GI~v~~~ 82 (117)
T d1feca2 18 PKRALCVGG-GYISIEFAGIFNAYKARGGQVDLAYRGDMILRGFDSELRKQLTEQLRANGINVRTH 82 (117)
T ss_dssp CSEEEEECS-SHHHHHHHHHHHHHSCTTCEEEEEESSSSSSTTSCHHHHHHHHHHHHHTTEEEEET
T ss_pred CCeEEEECC-ChHHHHHHHHhHhhcccccccceecccccccccccchhhHHHHHHHhhCcEEEEcC
Confidence 478999997 9999999987654 48899999987653 33344444444455556665543
|
| >d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Neisseria meningitidis, serogroup B [TaxId: 487]
Probab=93.62 E-value=0.051 Score=44.30 Aligned_cols=33 Identities=21% Similarity=0.218 Sum_probs=29.6
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCC-CcEEEEeCCC
Q 012176 119 MTVLVTGAAGFVGSHCSLALKKRG-DGVLGLDNFN 152 (469)
Q Consensus 119 ~~VlVtGatG~IG~~l~~~L~~~G-~~V~~~~r~~ 152 (469)
|+|.+.|+ |.+|.++++.|++.| ++|++.+|+.
T Consensus 1 MkI~fIG~-G~MG~ai~~~l~~~~~~~i~v~~r~~ 34 (152)
T d1yqga2 1 MNVYFLGG-GNMAAAVAGGLVKQGGYRIYIANRGA 34 (152)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHCSCEEEEECSSH
T ss_pred CEEEEEcC-cHHHHHHHHHHHHCCCCcEEEEeCCh
Confidence 78999996 999999999999887 8999999843
|
| >d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.61 E-value=0.026 Score=46.05 Aligned_cols=34 Identities=21% Similarity=0.194 Sum_probs=31.7
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeC
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDN 150 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r 150 (469)
.++|+|||+|| |.+|..-++.|++.|.+|++++.
T Consensus 11 l~gkrvLViGg-G~va~~ka~~Ll~~GA~VtVvap 44 (150)
T d1kyqa1 11 LKDKRILLIGG-GEVGLTRLYKLMPTGCKLTLVSP 44 (150)
T ss_dssp CTTCEEEEEEE-SHHHHHHHHHHGGGTCEEEEEEE
T ss_pred eCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeC
Confidence 68899999998 99999999999999999999964
|
| >d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=93.61 E-value=0.022 Score=47.97 Aligned_cols=35 Identities=14% Similarity=0.221 Sum_probs=30.5
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCC
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFN 152 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~ 152 (469)
.++|+|+|.|+ |+.++.++.+|.+.| +|+++.|+.
T Consensus 16 ~~~k~vlIlGa-GG~arai~~aL~~~~-~i~I~nR~~ 50 (177)
T d1nvta1 16 VKDKNIVIYGA-GGAARAVAFELAKDN-NIIIANRTV 50 (177)
T ss_dssp CCSCEEEEECC-SHHHHHHHHHHTSSS-EEEEECSSH
T ss_pred cCCCEEEEECC-cHHHHHHHHHHcccc-ceeeehhhh
Confidence 67899999996 889999999997777 899999954
|
| >d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, middle domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=93.61 E-value=0.055 Score=47.37 Aligned_cols=41 Identities=29% Similarity=0.297 Sum_probs=35.5
Q ss_pred CCCCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCC
Q 012176 113 PRRPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSY 154 (469)
Q Consensus 113 ~~~~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~ 154 (469)
.+....++|+|+|| |..|-..+..|.++|++|+++.+....
T Consensus 44 ~~~~~~k~VvIIGa-GpAGl~aA~~l~~~G~~v~l~E~~~~~ 84 (233)
T d1djqa3 44 RQTKNKDSVLIVGA-GPSGSEAARVLMESGYTVHLTDTAEKI 84 (233)
T ss_dssp CCCSSCCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSSST
T ss_pred CcccCCceEEEEcc-cHHHHHHHHHHHHhccceeeEeecccc
Confidence 34467899999997 999999999999999999999876543
|
| >d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, middle domain species: Escherichia coli [TaxId: 562]
Probab=93.58 E-value=0.054 Score=45.64 Aligned_cols=39 Identities=23% Similarity=0.272 Sum_probs=34.6
Q ss_pred CCCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCC
Q 012176 114 RRPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNS 153 (469)
Q Consensus 114 ~~~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~ 153 (469)
+..++|+|+|+|| |..|-..+..|.++||+|+++.+...
T Consensus 39 ~~~~~k~V~IIGa-GPAGL~AA~~la~~G~~Vtl~E~~~~ 77 (179)
T d1ps9a3 39 PAVQKKNLAVVGA-GPAGLAFAINAAARGHQVTLFDAHSE 77 (179)
T ss_dssp SCSSCCEEEEECC-SHHHHHHHHHHHTTTCEEEEEESSSS
T ss_pred CCCCCcEEEEECc-cHHHHHHHHHHHhhccceEEEeccCc
Confidence 3466799999996 99999999999999999999998654
|
| >d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 2 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=93.54 E-value=0.034 Score=46.86 Aligned_cols=36 Identities=17% Similarity=0.247 Sum_probs=31.6
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCC-cEEEEeCCCC
Q 012176 117 NGMTVLVTGAAGFVGSHCSLALKKRGD-GVLGLDNFNS 153 (469)
Q Consensus 117 ~~~~VlVtGatG~IG~~l~~~L~~~G~-~V~~~~r~~~ 153 (469)
.++||+|+|| |..|-..|..|.++|+ +|+++.|.+.
T Consensus 3 ~~~kVaIIGa-GpaGl~aA~~l~~~G~~~V~v~E~~~~ 39 (196)
T d1gtea4 3 YSAKIALLGA-GPASISCASFLARLGYSDITIFEKQEY 39 (196)
T ss_dssp GGCCEEEECC-SHHHHHHHHHHHHTTCCCEEEEESSSS
T ss_pred CCCEEEEECC-hHHHHHHHHHHHHCCCCeEEEEEecCc
Confidence 3578999997 9999999999999998 5999998554
|
| >d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=93.48 E-value=0.058 Score=45.80 Aligned_cols=65 Identities=17% Similarity=0.159 Sum_probs=47.5
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCcc
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFT 195 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~d 195 (469)
..+++|.|.| .|.||+.+++.|..-|.+|+..++....... .. . ..+.++++++.+ |
T Consensus 42 l~~~~vgiiG-~G~IG~~va~~l~~fg~~v~~~d~~~~~~~~-------------~~--~-----~~~~l~ell~~s--D 98 (188)
T d1sc6a1 42 ARGKKLGIIG-YGHIGTQLGILAESLGMYVYFYDIENKLPLG-------------NA--T-----QVQHLSDLLNMS--D 98 (188)
T ss_dssp STTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSCCCCCT-------------TC--E-----ECSCHHHHHHHC--S
T ss_pred ccceEEEEee-cccchhhhhhhcccccceEeeccccccchhh-------------hh--h-----hhhhHHHHHhhc--c
Confidence 5789999998 5999999999999999999999985432111 11 0 113577788888 8
Q ss_pred EEEEcccc
Q 012176 196 HVLHLAAQ 203 (469)
Q Consensus 196 ~Vih~Aa~ 203 (469)
+|+-++..
T Consensus 99 ii~i~~pl 106 (188)
T d1sc6a1 99 VVSLHVPE 106 (188)
T ss_dssp EEEECCCS
T ss_pred ceeecccC
Confidence 88776654
|
| >d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Trypanosoma cruzi [TaxId: 5693]
Probab=93.35 E-value=0.086 Score=40.82 Aligned_cols=59 Identities=19% Similarity=0.173 Sum_probs=39.8
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHC---CCcEEEEeCCCCCC---ChhHHHHHHHhhccCCeEEEEe
Q 012176 118 GMTVLVTGAAGFVGSHCSLALKKR---GDGVLGLDNFNSYY---DPSLKRARQKLLQKHQVFIVEG 177 (469)
Q Consensus 118 ~~~VlVtGatG~IG~~l~~~L~~~---G~~V~~~~r~~~~~---~~~~~~~~~~~~~~~~v~~v~~ 177 (469)
.++++|.|| |++|-.++..|.+. |.+|+++.|.+... ++.........+...+++++.+
T Consensus 20 p~~v~ivGg-G~ig~E~A~~l~~l~~~~~~Vtli~~~~~iL~~~d~~~~~~l~~~l~~~GV~v~~~ 84 (117)
T d1aoga2 20 PRRVLTVGG-GFISVEFAGIFNAYKPKDGQVTLCYRGEMILRGFDHTLREELTKQLTANGIQILTK 84 (117)
T ss_dssp CSEEEEECS-SHHHHHHHHHHHHHCCTTCEEEEEESSSSSSTTSCHHHHHHHHHHHHHTTCEEEES
T ss_pred CCeEEEECC-cHHHHHHHHHhhhcccCCcEEEEEeccchhhcccchHHHHHHHHHHHhcCcEEEcC
Confidence 478999997 99999999766654 56799999876543 2334344444445556666554
|
| >d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: 6-phospho-beta-glucosidase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=93.33 E-value=0.17 Score=41.89 Aligned_cols=122 Identities=11% Similarity=0.072 Sum_probs=64.3
Q ss_pred CCEEEEEcCC-ChhHHHHHHHHHHC----CCcEEEEeCCCCCCC-hhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhcc
Q 012176 118 GMTVLVTGAA-GFVGSHCSLALKKR----GDGVLGLDNFNSYYD-PSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDV 191 (469)
Q Consensus 118 ~~~VlVtGat-G~IG~~l~~~L~~~----G~~V~~~~r~~~~~~-~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~ 191 (469)
+|||.|+||. .+.+..++..+... +.++..+|.++.... +.............+..+.....+| ..+.+++
T Consensus 1 k~KI~iIGaGs~~~~~~~~~l~~~~~~~~~~eI~L~Di~e~~~~~~~~d~~~~~~~~~~~~~~~~~~~td---~~~al~g 77 (169)
T d1s6ya1 1 RLKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGVPIEIHLTLD---RRRALDG 77 (169)
T ss_dssp CEEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCCEEEEESC---HHHHHTT
T ss_pred CcEEEEECCChhhHHHHHHHHHHhccccCCCEEEEEcCCccHHHHHHHHHHHHHHHHhcCCCceeeecCC---chhhcCC
Confidence 3689999973 34445555544443 238888887443100 0000000111111122222223334 3556788
Q ss_pred CCccEEEEcccccChhhhcc----------------Ch--HHHHHHHHHHHHHHHHHHHhcCCCCeEEEEc
Q 012176 192 VPFTHVLHLAAQAGVRYAMQ----------------NP--QSYVASNIAGFVNLLEVCKSVNPQPSIVWAS 244 (469)
Q Consensus 192 ~~~d~Vih~Aa~~~~~~~~~----------------~~--~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~S 244 (469)
+ |+||..|+......... .+ ......|+.-.+.+++.+++......+|.+|
T Consensus 78 a--DvVv~ta~~~~~~~~~r~~~i~~~~gi~~~~t~g~~~~~~~~~n~~i~~~i~~~i~~~~pda~~i~vt 146 (169)
T d1s6ya1 78 A--DFVTTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGLFKGLRTIPVILDIIRDMEELCPDAWLINFT 146 (169)
T ss_dssp C--SEEEECCCTTHHHHHHHHHHTGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECS
T ss_pred C--CEEEEccccCCCCCeehhhhhhhhcCceeccccCcchhhhccccHHHHHHHHHHHhhcCCCeEEEEeC
Confidence 8 99999998643211000 00 1223458888888999888888775566555
|
| >d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=93.25 E-value=0.038 Score=45.40 Aligned_cols=25 Identities=36% Similarity=0.397 Sum_probs=22.3
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCC
Q 012176 119 MTVLVTGAAGFVGSHCSLALKKRGD 143 (469)
Q Consensus 119 ~~VlVtGatG~IG~~l~~~L~~~G~ 143 (469)
-+|.|.|||||+|..|++.|.++.+
T Consensus 2 ~kVaIvGATGyvG~eLirlL~~H~f 26 (154)
T d2gz1a1 2 YTVAVVGATGAVGAQMIKMLEESTL 26 (154)
T ss_dssp EEEEEETTTSHHHHHHHHHHHTCCS
T ss_pred CEEEEECCCcHHHHHHHHHHHcCCC
Confidence 3799999999999999999988864
|
| >d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]
Probab=93.18 E-value=0.046 Score=45.04 Aligned_cols=37 Identities=24% Similarity=0.327 Sum_probs=31.5
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCC--cEEEEeCCCCC
Q 012176 117 NGMTVLVTGAAGFVGSHCSLALKKRGD--GVLGLDNFNSY 154 (469)
Q Consensus 117 ~~~~VlVtGatG~IG~~l~~~L~~~G~--~V~~~~r~~~~ 154 (469)
++|+|+|+|| |++|-.++..|.+.++ +|+++++.+..
T Consensus 1 ~gkrivIvGg-G~~G~e~A~~l~~~~~~~~Vtlie~~~~~ 39 (186)
T d1fcda1 1 AGRKVVVVGG-GTGGATAAKYIKLADPSIEVTLIEPNTDY 39 (186)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHHCTTSEEEEECSCSCE
T ss_pred CCCcEEEECc-cHHHHHHHHHHHHcCCCCcEEEEECCCcc
Confidence 4789999997 9999999999999885 78888876643
|
| >d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Apoptosis-inducing factor (AIF) species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.12 E-value=0.12 Score=41.10 Aligned_cols=59 Identities=20% Similarity=0.256 Sum_probs=40.2
Q ss_pred CCCEEEEEcCCChhHHHHHHHHH----HCCCcEEEEeCCCCCC----ChhHHHHHHHhhccCCeEEEE
Q 012176 117 NGMTVLVTGAAGFVGSHCSLALK----KRGDGVLGLDNFNSYY----DPSLKRARQKLLQKHQVFIVE 176 (469)
Q Consensus 117 ~~~~VlVtGatG~IG~~l~~~L~----~~G~~V~~~~r~~~~~----~~~~~~~~~~~~~~~~v~~v~ 176 (469)
..++++|.|| |++|-.++..|. +.|.+|+++.+.+... ++.........+...+++++.
T Consensus 36 ~~k~i~IvGg-G~~G~E~A~~l~~~~~~~g~~Vt~i~~~~~~l~~~~~~~~~~~~~~~l~~~GV~~~~ 102 (137)
T d1m6ia2 36 EVKSITIIGG-GFLGSELACALGRKARALGTEVIQLFPEKGNMGKILPEYLSNWTMEKVRREGVKVMP 102 (137)
T ss_dssp HCSEEEEECC-SHHHHHHHHHHHHHHHHHTCEEEEECSSSSTTTTTSCHHHHHHHHHHHHTTTCEEEC
T ss_pred cCCEEEEECC-CHHHHHHHHHHHHHHHhcCCEEEEecccccCCcccCCHHHHHHHHHHHHhCCcEEEe
Confidence 3578999997 999999999885 3589999998876543 333333334444555555543
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=93.10 E-value=0.18 Score=41.95 Aligned_cols=78 Identities=17% Similarity=0.112 Sum_probs=49.3
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCC-cEEEEeCCCCCCChhHHHHHHHhhccCCeE-EEEecCCC--HHHHHHhhcc
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGD-GVLGLDNFNSYYDPSLKRARQKLLQKHQVF-IVEGDLND--APLLTKLFDV 191 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~-~v~~Dl~d--~~~l~~~~~~ 191 (469)
..+.+|+|.|+ |.+|...++.+...|. +|++++++++ .++..+ . -+.. ++...-.| .+...+...+
T Consensus 26 ~~G~~VlV~Ga-GgvGl~a~~~ak~~G~~~Vi~~d~~~~----kl~~a~-~----lGa~~~i~~~~~d~~~~~~~~~~~~ 95 (174)
T d1p0fa2 26 TPGSTCAVFGL-GGVGFSAIVGCKAAGASRIIGVGTHKD----KFPKAI-E----LGATECLNPKDYDKPIYEVICEKTN 95 (174)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECSCGG----GHHHHH-H----TTCSEEECGGGCSSCHHHHHHHHTT
T ss_pred CCCCEEEEECC-CchhHHHHHHHHHcCCceeeccCChHH----HHHHHH-H----cCCcEEEcCCCchhHHHHHHHHhcC
Confidence 56789999996 9999999999999986 6888887443 122111 1 1322 22211122 2334444444
Q ss_pred CCccEEEEcccc
Q 012176 192 VPFTHVLHLAAQ 203 (469)
Q Consensus 192 ~~~d~Vih~Aa~ 203 (469)
-++|+||.+.+.
T Consensus 96 ~G~d~vid~~g~ 107 (174)
T d1p0fa2 96 GGVDYAVECAGR 107 (174)
T ss_dssp SCBSEEEECSCC
T ss_pred CCCcEEEEcCCC
Confidence 467999999875
|
| >d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Escherichia coli [TaxId: 562]
Probab=93.09 E-value=0.085 Score=43.61 Aligned_cols=35 Identities=26% Similarity=0.308 Sum_probs=32.9
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeC
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDN 150 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r 150 (469)
..+|+|+|.|-+..+|+-++..|.++|+.|+++..
T Consensus 35 l~GK~v~VIGrS~~VG~Pla~lL~~~gatVt~~h~ 69 (166)
T d1b0aa1 35 TFGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHR 69 (166)
T ss_dssp CTTCEEEEECCCTTTHHHHHHHHHTTTCEEEEECS
T ss_pred cccceEEEEeccccccHHHHHHHHHhhcccccccc
Confidence 68999999999999999999999999999998875
|
| >d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-lactate dehydrogenase species: Lactobacillus helveticus [TaxId: 1587]
Probab=93.09 E-value=0.084 Score=45.13 Aligned_cols=65 Identities=18% Similarity=0.200 Sum_probs=46.7
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCcc
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFT 195 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~d 195 (469)
..+++|.|.| .|.||+.+++.|..-|.+|++.++.... ..... . ...++++++++.+ |
T Consensus 41 l~gk~vgIiG-~G~IG~~va~~l~~fg~~V~~~d~~~~~------~~~~~-----~--------~~~~~l~~~l~~s--D 98 (197)
T d1j4aa1 41 VRDQVVGVVG-TGHIGQVFMQIMEGFGAKVITYDIFRNP------ELEKK-----G--------YYVDSLDDLYKQA--D 98 (197)
T ss_dssp GGGSEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSCCH------HHHHT-----T--------CBCSCHHHHHHHC--S
T ss_pred ccCCeEEEec-ccccchhHHHhHhhhcccccccCccccc------ccccc-----e--------eeecccccccccc--c
Confidence 5789999999 5999999999999999999999874321 11110 1 1123477788877 8
Q ss_pred EEEEccc
Q 012176 196 HVLHLAA 202 (469)
Q Consensus 196 ~Vih~Aa 202 (469)
+|+.+.-
T Consensus 99 ii~~~~p 105 (197)
T d1j4aa1 99 VISLHVP 105 (197)
T ss_dssp EEEECSC
T ss_pred cccccCC
Confidence 8776654
|
| >d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=92.85 E-value=0.048 Score=48.59 Aligned_cols=34 Identities=29% Similarity=0.314 Sum_probs=31.0
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCC
Q 012176 118 GMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFN 152 (469)
Q Consensus 118 ~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~ 152 (469)
+|||+|+|| |.-|-..+.+|.+.|++|+++.+.+
T Consensus 1 ~KkV~IIGa-G~aGL~aA~~La~~G~~V~vlE~~~ 34 (373)
T d1seza1 1 AKRVAVIGA-GVSGLAAAYKLKIHGLNVTVFEAEG 34 (373)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHTTSCEEEEECSSS
T ss_pred CCEEEEECc-CHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 488999996 9999999999999999999998744
|
| >d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: L-aminoacid oxidase species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]
Probab=92.70 E-value=0.092 Score=47.52 Aligned_cols=39 Identities=26% Similarity=0.363 Sum_probs=34.0
Q ss_pred CCCCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCC
Q 012176 113 PRRPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFN 152 (469)
Q Consensus 113 ~~~~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~ 152 (469)
++..+.|+|+|+|| |..|-..+..|.++|++|+++.+.+
T Consensus 25 ~~~~~pkkV~IIGa-G~aGLsaA~~L~~~G~~V~vlE~~~ 63 (370)
T d2iida1 25 KATSNPKHVVIVGA-GMAGLSAAYVLAGAGHQVTVLEASE 63 (370)
T ss_dssp CCCSSCCEEEEECC-BHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred CCCCCCCeEEEECC-CHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 34467789999996 9999999999999999999998744
|
| >d1q0qa2 c.2.1.3 (A:1-125,A:275-300) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase species: Escherichia coli [TaxId: 562]
Probab=92.48 E-value=0.34 Score=39.21 Aligned_cols=33 Identities=15% Similarity=0.180 Sum_probs=28.0
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHC--CCcEEEEeC
Q 012176 118 GMTVLVTGAAGFVGSHCSLALKKR--GDGVLGLDN 150 (469)
Q Consensus 118 ~~~VlVtGatG~IG~~l~~~L~~~--G~~V~~~~r 150 (469)
+|+|.|.|+||-||...++-+.+. .++|.+++-
T Consensus 1 MK~I~IlGsTGSIG~~tL~Vi~~~~d~f~v~~Lsa 35 (151)
T d1q0qa2 1 MKQLTILGSTGSIGCSTLDVVRHNPEHFRVVALVA 35 (151)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHCTTTEEEEEEEE
T ss_pred CCeEEEEcCCcHHHHHHHHHHHhCCCCcEEEEEEe
Confidence 468999999999999999988886 468888764
|
| >d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Klebsiella pneumoniae [TaxId: 573]
Probab=92.43 E-value=0.065 Score=49.33 Aligned_cols=35 Identities=29% Similarity=0.487 Sum_probs=31.7
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCC
Q 012176 118 GMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNS 153 (469)
Q Consensus 118 ~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~ 153 (469)
.|+|+|+|| |.-|..+|..|.+.|++|.++.+.+.
T Consensus 2 ~KKI~IIGa-G~sGL~aA~~L~k~G~~V~viEk~~~ 36 (314)
T d2bi7a1 2 SKKILIVGA-GFSGAVIGRQLAEKGHQVHIIDQRDH 36 (314)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHTTTCEEEEEESSSS
T ss_pred CCEEEEECC-cHHHHHHHHHHHhCCCCEEEEECCCC
Confidence 578999996 99999999999999999999997654
|
| >d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]
Probab=92.24 E-value=0.24 Score=40.49 Aligned_cols=70 Identities=21% Similarity=0.253 Sum_probs=50.9
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCc
Q 012176 115 RPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPF 194 (469)
Q Consensus 115 ~~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~ 194 (469)
...+|+++|.| -|.+|+-+++.|...|.+|+++..++ .+..+...+ +.++.. ++++++..
T Consensus 20 ~laGk~vvV~G-YG~vGrG~A~~~rg~Ga~V~V~E~DP-------i~alqA~md--Gf~v~~--------~~~a~~~a-- 79 (163)
T d1v8ba1 20 LISGKIVVICG-YGDVGKGCASSMKGLGARVYITEIDP-------ICAIQAVME--GFNVVT--------LDEIVDKG-- 79 (163)
T ss_dssp CCTTSEEEEEC-CSHHHHHHHHHHHHHTCEEEEECSCH-------HHHHHHHTT--TCEECC--------HHHHTTTC--
T ss_pred eecCCEEEEec-ccccchhHHHHHHhCCCEEEEEecCc-------hhhHHHHhc--CCccCc--------hhHccccC--
Confidence 37899999999 59999999999999999999998722 222232222 444433 45677777
Q ss_pred cEEEEccccc
Q 012176 195 THVLHLAAQA 204 (469)
Q Consensus 195 d~Vih~Aa~~ 204 (469)
|++|-.-|..
T Consensus 80 Di~vTaTGn~ 89 (163)
T d1v8ba1 80 DFFITCTGNV 89 (163)
T ss_dssp SEEEECCSSS
T ss_pred cEEEEcCCCC
Confidence 8888877763
|
| >d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Transcription corepressor CtbP species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]
Probab=92.23 E-value=0.034 Score=47.55 Aligned_cols=39 Identities=36% Similarity=0.366 Sum_probs=34.2
Q ss_pred CCCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCC
Q 012176 114 RRPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNS 153 (469)
Q Consensus 114 ~~~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~ 153 (469)
....+++|.|.|. |-||+.+++.|..-|.+|++.++...
T Consensus 45 ~eL~gktvgIiG~-G~IG~~va~~l~~fg~~v~~~d~~~~ 83 (193)
T d1mx3a1 45 ARIRGETLGIIGL-GRVGQAVALRAKAFGFNVLFYDPYLS 83 (193)
T ss_dssp CCCTTCEEEEECC-SHHHHHHHHHHHTTTCEEEEECTTSC
T ss_pred eeeeCceEEEecc-ccccccceeeeeccccceeeccCccc
Confidence 3478899999995 99999999999999999999998543
|
| >d2blna2 c.65.1.1 (A:1-203) Polymyxin resistance protein ArnA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Formyltransferase superfamily: Formyltransferase family: Formyltransferase domain: Polymyxin resistance protein ArnA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=92.10 E-value=0.057 Score=46.45 Aligned_cols=83 Identities=10% Similarity=0.060 Sum_probs=48.8
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCC-CCChhHHHHHHHhhccCCeEEEE-ecCCCHHHHHHhhccCCccE
Q 012176 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNS-YYDPSLKRARQKLLQKHQVFIVE-GDLNDAPLLTKLFDVVPFTH 196 (469)
Q Consensus 119 ~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~-~~~~~~~~~~~~~~~~~~v~~v~-~Dl~d~~~l~~~~~~~~~d~ 196 (469)
|+|+|.|. +..|..+++.|++.|++|.++.-.++ +................++.++. .++.+++.+ +.++..++|+
T Consensus 1 Mkiv~~~~-~~~g~~~l~~L~~~g~~I~~Vvt~~~~~~~~~~~~~~~~~a~~~~i~~~~~~~~~~~~~~-~~i~~~~~Dl 78 (203)
T d2blna2 1 MKTVVFAY-HDMGCLGIEALLAAGYEISAIFTHTDNPGEKAFYGSVARLAAERGIPVYAPDNVNHPLWV-ERIAQLSPDV 78 (203)
T ss_dssp CEEEEEEC-HHHHHHHHHHHHHTTCEEEEEECCCC------CCCCHHHHHHHHTCCEECCSCCCSHHHH-HHHHHTCCSE
T ss_pred CeEEEEec-CHHHHHHHHHHHHCCCCEEEEEcCCCCCCcccccCHHHHHHHHcCCcceecccccchhhh-hhhhhhcccc
Confidence 68888875 66899999999999999976653221 11000000011111222555544 466666654 4556678899
Q ss_pred EEEcccc
Q 012176 197 VLHLAAQ 203 (469)
Q Consensus 197 Vih~Aa~ 203 (469)
+|...+.
T Consensus 79 ii~~g~~ 85 (203)
T d2blna2 79 IFSFYYR 85 (203)
T ss_dssp EEEESCC
T ss_pred eeeeecc
Confidence 9887643
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=92.10 E-value=0.13 Score=43.08 Aligned_cols=34 Identities=29% Similarity=0.354 Sum_probs=30.9
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCC
Q 012176 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNS 153 (469)
Q Consensus 119 ~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~ 153 (469)
-+|+|.|| |-.|.+=++.....|..|+++|.+..
T Consensus 30 a~VvViGa-GvaG~~Aa~~A~~lGA~V~v~D~~~~ 63 (183)
T d1l7da1 30 ARVLVFGV-GVAGLQAIATAKRLGAVVMATDVRAA 63 (183)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCST
T ss_pred cEEEEEcC-cHHHHHHHHHHHHcCCEEEEEeccHH
Confidence 47999997 99999999999999999999998654
|
| >d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-2-hydroxyisocaproate dehydrogenase species: Lactobacillus casei [TaxId: 1582]
Probab=92.09 E-value=0.11 Score=44.51 Aligned_cols=65 Identities=22% Similarity=0.161 Sum_probs=47.1
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCc
Q 012176 115 RPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPF 194 (469)
Q Consensus 115 ~~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~ 194 (469)
...+++|.|.|. |-||+.+++.|..-|.+|++.++....... ..+. ..+++++++.+
T Consensus 42 ~l~~ktvgIiG~-G~IG~~va~~l~~fg~~v~~~d~~~~~~~~------------~~~~--------~~~l~~l~~~~-- 98 (199)
T d1dxya1 42 ELGQQTVGVMGT-GHIGQVAIKLFKGFGAKVIAYDPYPMKGDH------------PDFD--------YVSLEDLFKQS-- 98 (199)
T ss_dssp CGGGSEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSCCSSCC------------TTCE--------ECCHHHHHHHC--
T ss_pred cccceeeeeeec-ccccccccccccccceeeeccCCccchhhh------------cchh--------HHHHHHHHHhc--
Confidence 467899999995 999999999999999999999985432111 1111 22466777777
Q ss_pred cEEEEccc
Q 012176 195 THVLHLAA 202 (469)
Q Consensus 195 d~Vih~Aa 202 (469)
|+|+.+.-
T Consensus 99 D~v~~~~p 106 (199)
T d1dxya1 99 DVIDLHVP 106 (199)
T ss_dssp SEEEECCC
T ss_pred ccceeeec
Confidence 88776653
|
| >d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.03 E-value=0.17 Score=42.01 Aligned_cols=35 Identities=20% Similarity=0.156 Sum_probs=33.3
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeC
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDN 150 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r 150 (469)
..+|+|+|.|-+.-+|+-++..|.++|..|+.+..
T Consensus 37 l~Gk~vvVIGrS~iVGrPLa~lL~~~gatVt~~~~ 71 (170)
T d1a4ia1 37 IAGRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHS 71 (170)
T ss_dssp CTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECT
T ss_pred cccceEEEEecCCccchHHHHHHHhccCceEEEec
Confidence 68999999999999999999999999999999876
|
| >d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Myxococcus xanthus [TaxId: 34]
Probab=92.00 E-value=0.059 Score=47.89 Aligned_cols=33 Identities=30% Similarity=0.470 Sum_probs=30.3
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCC
Q 012176 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFN 152 (469)
Q Consensus 119 ~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~ 152 (469)
|+|+|+|| |.-|-..+..|.++|++|+++.+.+
T Consensus 1 m~V~IIGa-G~aGL~aA~~L~~~G~~V~vlE~~~ 33 (347)
T d2ivda1 1 MNVAVVGG-GISGLAVAHHLRSRGTDAVLLESSA 33 (347)
T ss_dssp CCEEEECC-BHHHHHHHHHHHTTTCCEEEECSSS
T ss_pred CeEEEECC-CHHHHHHHHHHHhCCCCEEEEecCC
Confidence 67999997 9999999999999999999998754
|
| >d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains species: Escherichia coli [TaxId: 562]
Probab=91.61 E-value=0.26 Score=38.51 Aligned_cols=77 Identities=14% Similarity=0.138 Sum_probs=54.9
Q ss_pred CCCCEEEEEcCCC----------hhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHH
Q 012176 116 PNGMTVLVTGAAG----------FVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLL 185 (469)
Q Consensus 116 ~~~~~VlVtGatG----------~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l 185 (469)
.+.++|||.|+.. |-+.+.+++|.+.|++++.+.-+++....... -..-+...--..+.+
T Consensus 5 ~~~kkvlilGsGp~~IGq~~EfDy~~~~a~~alke~g~~~iliN~NP~TVstd~d----------~aD~lYfePlt~e~v 74 (127)
T d1a9xa3 5 TDIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVINVNSNPATIMTDPE----------MADATYIEPIHWEVV 74 (127)
T ss_dssp SSCCEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHHTCEEEEECSCTTCGGGCGG----------GSSEEECSCCCHHHH
T ss_pred CCCCEEEEECCCcCcccccchhHHHHHHHHHHHHHcCCeEEEecCchHhhhcChh----------hcceeeeecCCHHHH
Confidence 4568999999844 67999999999999999999876653222110 111233344557889
Q ss_pred HHhhccCCccEEEEccc
Q 012176 186 TKLFDVVPFTHVLHLAA 202 (469)
Q Consensus 186 ~~~~~~~~~d~Vih~Aa 202 (469)
.++++..+||.|+-..|
T Consensus 75 ~~Ii~~E~pd~il~~~G 91 (127)
T d1a9xa3 75 RKIIEKERPDAVLPTMG 91 (127)
T ss_dssp HHHHHHHCCSEEECSSS
T ss_pred HHHHHHhCcCCeEEEee
Confidence 99998889999986554
|
| >d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Phenylalanine dehydrogenase species: Rhodococcus sp., M4 [TaxId: 1831]
Probab=91.39 E-value=0.22 Score=42.51 Aligned_cols=35 Identities=34% Similarity=0.471 Sum_probs=32.2
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeC
Q 012176 115 RPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDN 150 (469)
Q Consensus 115 ~~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r 150 (469)
..++++|+|-| -|-+|+++++.|.+.|.+|++.+.
T Consensus 24 ~L~gk~v~IqG-~G~VG~~~A~~L~~~Gakvvv~d~ 58 (201)
T d1c1da1 24 SLDGLTVLVQG-LGAVGGSLASLAAEAGAQLLVADT 58 (201)
T ss_dssp CSTTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECS
T ss_pred CCCCCEEEEEC-CCHHHHHHHHHHHHCCCEEEEecc
Confidence 47899999999 599999999999999999998876
|
| >d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains species: Escherichia coli [TaxId: 562]
Probab=91.37 E-value=0.5 Score=36.43 Aligned_cols=76 Identities=12% Similarity=0.075 Sum_probs=53.5
Q ss_pred CCCEEEEEcCCC----------hhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHH
Q 012176 117 NGMTVLVTGAAG----------FVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLT 186 (469)
Q Consensus 117 ~~~~VlVtGatG----------~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~ 186 (469)
+.++|||.|+.. |-+.+.+++|.+.|++++.+..+++...... .-..-+...--..+.+.
T Consensus 3 ~~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~g~~~IliN~NPeTVstd~----------d~aD~lYfeplt~e~v~ 72 (121)
T d1a9xa4 3 DREKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNPETVSTDY----------DTSDRLYFEPVTLEDVL 72 (121)
T ss_dssp SSCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTTCEEEEECCCTTSSTTST----------TSSSEEECCCCSHHHHH
T ss_pred CCCEEEEECCCcCcccccchhhHHHHHHHHHHHhcCCeEEEEecChhhhhcCh----------hhcCceEEccCCHHHHH
Confidence 567999999744 7799999999999999999987665433211 01112233334577788
Q ss_pred HhhccCCccEEEEccc
Q 012176 187 KLFDVVPFTHVLHLAA 202 (469)
Q Consensus 187 ~~~~~~~~d~Vih~Aa 202 (469)
++++..+||.|+-..|
T Consensus 73 ~Ii~~E~p~~ii~~~G 88 (121)
T d1a9xa4 73 EIVRIEKPKGVIVQYG 88 (121)
T ss_dssp HHHHHHCCSEEECSSS
T ss_pred HHHHHhCCCEEEeehh
Confidence 8888878898876554
|
| >d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-glycerate dehydrogenase species: Hyphomicrobium methylovorum [TaxId: 84]
Probab=91.27 E-value=0.18 Score=42.77 Aligned_cols=37 Identities=14% Similarity=0.115 Sum_probs=32.8
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCC
Q 012176 115 RPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFN 152 (469)
Q Consensus 115 ~~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~ 152 (469)
...+++|.|.|. |.||+.+++.|..-|.+|.+.++..
T Consensus 44 ~l~g~tvgIiG~-G~IG~~va~~l~~fg~~v~~~d~~~ 80 (191)
T d1gdha1 44 KLDNKTLGIYGF-GSIGQALAKRAQGFDMDIDYFDTHR 80 (191)
T ss_dssp CCTTCEEEEECC-SHHHHHHHHHHHTTTCEEEEECSSC
T ss_pred eecccceEEeec-ccchHHHHHHHHhhccccccccccc
Confidence 367899999995 9999999999999999999998744
|
| >d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=91.17 E-value=0.26 Score=41.32 Aligned_cols=37 Identities=27% Similarity=0.308 Sum_probs=32.5
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCC
Q 012176 115 RPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFN 152 (469)
Q Consensus 115 ~~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~ 152 (469)
...++++.|.|. |.||+.+++.+..-|.+|++.++..
T Consensus 41 ~l~~k~vgiiG~-G~IG~~va~~~~~fg~~v~~~d~~~ 77 (184)
T d1ygya1 41 EIFGKTVGVVGL-GRIGQLVAQRIAAFGAYVVAYDPYV 77 (184)
T ss_dssp CCTTCEEEEECC-SHHHHHHHHHHHTTTCEEEEECTTS
T ss_pred cccceeeeeccc-cchhHHHHHHhhhccceEEeecCCC
Confidence 367889999985 9999999999999999999998754
|
| >d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glycine oxidase ThiO species: Bacillus sp. [TaxId: 1409]
Probab=91.15 E-value=0.093 Score=46.60 Aligned_cols=32 Identities=22% Similarity=0.335 Sum_probs=29.2
Q ss_pred EEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCC
Q 012176 120 TVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFN 152 (469)
Q Consensus 120 ~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~ 152 (469)
-|+|+|| |.+|..++.+|.++|.+|+++++..
T Consensus 6 DvvIIGa-Gi~Gls~A~~La~~G~~V~vlE~~~ 37 (276)
T d1ryia1 6 EAVVIGG-GIIGSAIAYYLAKENKNTALFESGT 37 (276)
T ss_dssp EEEEECC-SHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred CEEEECc-CHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 3899997 9999999999999999999999843
|
| >d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.92 E-value=0.23 Score=41.19 Aligned_cols=82 Identities=20% Similarity=0.058 Sum_probs=53.4
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecC--CCHHHHHHhhccC
Q 012176 115 RPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDL--NDAPLLTKLFDVV 192 (469)
Q Consensus 115 ~~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl--~d~~~l~~~~~~~ 192 (469)
...||+|+|.|-+.-+|+=++..|+++|..|+.++....... .......-......|+ ...+.+++....+
T Consensus 26 ~l~GK~vvVIGrS~iVG~Pla~lL~~~gaTVt~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~lk~~~~~a 98 (171)
T d1edza1 26 RLYGKKCIVINRSEIVGRPLAALLANDGATVYSVDVNNIQKF-------TRGESLKLNKHHVEDLGEYSEDLLKKCSLDS 98 (171)
T ss_dssp TTTTCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSSEEEEE-------ESCCCSSCCCCEEEEEEECCHHHHHHHHHHC
T ss_pred CCCCCEEEEECCccccHHHHHHHHHHCCCEEEEecccccccc-------ccccceeeeeeccccccccchhHHhhccccC
Confidence 378999999999999999999999999999998865221000 0000000000111122 3456688888778
Q ss_pred CccEEEEcccccC
Q 012176 193 PFTHVLHLAAQAG 205 (469)
Q Consensus 193 ~~d~Vih~Aa~~~ 205 (469)
|+||...|...
T Consensus 99 --DIvIsavG~p~ 109 (171)
T d1edza1 99 --DVVITGVPSEN 109 (171)
T ss_dssp --SEEEECCCCTT
T ss_pred --CEEEEccCCCc
Confidence 99998887633
|
| >d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Ubiquitin activating enzymes (UBA) domain: Amyloid beta precursor protein-binding protein 1, APPBP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.66 E-value=0.21 Score=49.34 Aligned_cols=112 Identities=15% Similarity=0.069 Sum_probs=66.0
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCC-cEEEEeCCCCC--------------CChhHHHHHHHhhc--cC--CeEEEEe
Q 012176 117 NGMTVLVTGAAGFVGSHCSLALKKRGD-GVLGLDNFNSY--------------YDPSLKRARQKLLQ--KH--QVFIVEG 177 (469)
Q Consensus 117 ~~~~VlVtGatG~IG~~l~~~L~~~G~-~V~~~~r~~~~--------------~~~~~~~~~~~~~~--~~--~v~~v~~ 177 (469)
...+|+|.|+ |.+|..+++.|...|- +++++|...-. .-+.+.......+. .+ .+..+..
T Consensus 24 ~~s~VlvvG~-gglG~Ei~knLvl~GVg~itivD~d~v~~sdL~rqf~~~~~diGk~ka~~~~~~L~~lNp~v~i~~~~~ 102 (529)
T d1yova1 24 ESAHVCLINA-TATGTEILKNLVLPGIGSFTIIDGNQVSGEDAGNNFFLQRSSIGKNRAEAAMEFLQELNSDVSGSFVEE 102 (529)
T ss_dssp HHCEEEECCC-SHHHHHHHHHHHTTTCSEEEEECCSBCCHHHHHHCTTCCGGGTTSBHHHHHHHHHHTTCTTSBCCEESS
T ss_pred hCCCEEEECC-CHHHHHHHHHHHHhcCCEEEEEcCCcCChhhcCchhcCChhhCCCHHHHHHHHHHHHhCCCCcEEEEcC
Confidence 4468999997 8899999999999995 67777642210 00111111111121 12 2334443
Q ss_pred cCCCH-HHHHHhhccCCccEEEEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcCccccC
Q 012176 178 DLNDA-PLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYG 250 (469)
Q Consensus 178 Dl~d~-~~l~~~~~~~~~d~Vih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS~~vyg 250 (469)
++.+. +.....+.+. |+||.+.. |......+-++|++.++ .+|++.+.+.||
T Consensus 103 ~~~~~~~~~~~~~~~~--dvVv~~~~-----------------~~~~~~~l~~~c~~~~i--p~i~~~~~G~~G 155 (529)
T d1yova1 103 SPENLLDNDPSFFCRF--TVVVATQL-----------------PESTSLRLADVLWNSQI--PLLICRTYGLVG 155 (529)
T ss_dssp CHHHHHHSCGGGGGGC--SEEEEESC-----------------CHHHHHHHHHHHHHHTC--CEEEEEEETTEE
T ss_pred CchhhhhhHHHHhcCC--CEEEECCC-----------------CHHHHHHHHHHHHHcCC--CEEEEeccCCEE
Confidence 32211 1112445555 99997753 33344667788998887 499988888776
|
| >d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Formate dehydrogenase species: Pseudomonas sp., strain 101 [TaxId: 306]
Probab=90.55 E-value=0.2 Score=42.18 Aligned_cols=37 Identities=19% Similarity=0.051 Sum_probs=33.2
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCC
Q 012176 115 RPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFN 152 (469)
Q Consensus 115 ~~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~ 152 (469)
...+++|.|.|. |-||+.+++.|..-|.+|...++..
T Consensus 41 ~l~~~~vgiiG~-G~IG~~va~~l~~fg~~v~~~d~~~ 77 (188)
T d2naca1 41 DLEAMHVGTVAA-GRIGLAVLRRLAPFDVHLHYTDRHR 77 (188)
T ss_dssp CCTTCEEEEECC-SHHHHHHHHHHGGGTCEEEEECSSC
T ss_pred eccccceeeccc-cccchhhhhhhhccCceEEEEeecc
Confidence 467899999995 9999999999999999999999854
|
| >d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Probab=90.54 E-value=0.26 Score=40.64 Aligned_cols=78 Identities=15% Similarity=0.143 Sum_probs=46.8
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCC-cEEEEeCCCCCCChhHHHHHHHhhccCCe-EEEEe-cCC-CHHHHHHhhcc
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGD-GVLGLDNFNSYYDPSLKRARQKLLQKHQV-FIVEG-DLN-DAPLLTKLFDV 191 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~v-~~v~~-Dl~-d~~~l~~~~~~ 191 (469)
..+.+|+|.|+ |.+|...+..+...|. +|+++++.++ .+ +.... -+. +++.. +-. ..+.+.+...+
T Consensus 27 k~g~~VlI~G~-Gg~g~~~~~~~~~~g~~~Vi~~~~~~~----rl-~~a~~----~GAd~~in~~~~~~~~~~~~~~~~~ 96 (175)
T d1cdoa2 27 EPGSTCAVFGL-GAVGLAAVMGCHSAGAKRIIAVDLNPD----KF-EKAKV----FGATDFVNPNDHSEPISQVLSKMTN 96 (175)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGG----GH-HHHHH----TTCCEEECGGGCSSCHHHHHHHHHT
T ss_pred CCCCEEEEEec-CCccchHHHHHHHHhhchheeecchHH----HH-HHHHH----cCCcEEEcCCCcchhHHHHHHhhcc
Confidence 46778999997 6688777777777765 6888887443 11 11111 132 22221 111 12345555555
Q ss_pred CCccEEEEcccc
Q 012176 192 VPFTHVLHLAAQ 203 (469)
Q Consensus 192 ~~~d~Vih~Aa~ 203 (469)
.++|+||.+.|.
T Consensus 97 ~G~d~vid~~G~ 108 (175)
T d1cdoa2 97 GGVDFSLECVGN 108 (175)
T ss_dssp SCBSEEEECSCC
T ss_pred CCcceeeeecCC
Confidence 567999999985
|
| >d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, C-terminal domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=90.45 E-value=0.3 Score=39.39 Aligned_cols=37 Identities=16% Similarity=0.187 Sum_probs=30.0
Q ss_pred CCCEEEEE-cCCChhHHHHHHHHHHCCCcEEEEeCCCC
Q 012176 117 NGMTVLVT-GAAGFVGSHCSLALKKRGDGVLGLDNFNS 153 (469)
Q Consensus 117 ~~~~VlVt-GatG~IG~~l~~~L~~~G~~V~~~~r~~~ 153 (469)
-++.|+|. .+.||||..+++.|.++|++|+++.+...
T Consensus 38 ~~~~vvi~d~ggg~ig~e~A~~la~~G~~Vtlv~~~~~ 75 (156)
T d1djqa2 38 IGKRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVHL 75 (156)
T ss_dssp CCSEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSCT
T ss_pred cCCceEEEecCCChHHHHHHHHHHHcCCeEEEEecCCc
Confidence 34566665 34599999999999999999999998653
|
| >d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Ubiquitin activating enzymes (UBA) domain: UBA3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.43 E-value=0.58 Score=44.61 Aligned_cols=80 Identities=16% Similarity=0.093 Sum_probs=49.0
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHCCC-cEEEEeCCCCC----------CCh----hHHHHHHHhh----ccCCeEEEEec
Q 012176 118 GMTVLVTGAAGFVGSHCSLALKKRGD-GVLGLDNFNSY----------YDP----SLKRARQKLL----QKHQVFIVEGD 178 (469)
Q Consensus 118 ~~~VlVtGatG~IG~~l~~~L~~~G~-~V~~~~r~~~~----------~~~----~~~~~~~~~~----~~~~v~~v~~D 178 (469)
..+|||.|+ |.||.++++.|...|. +++++|...-. ... .+.......+ ..-.+.....+
T Consensus 37 ~~kVlvvG~-GglG~ei~k~L~~~Gvg~i~lvD~D~Ve~sNL~RQflf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~ 115 (426)
T d1yovb1 37 TCKVLVIGA-GGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVPNCNVVPHFNK 115 (426)
T ss_dssp HCCEEEECS-STTHHHHHHHHHTTTCCCEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHSTTCCCEEECSC
T ss_pred cCeEEEECC-CHHHHHHHHHHHHcCCCeEEEEECCCcchhhhcccccCChhHcCcHHHHHHHHHHHhhCCCCceEeeecc
Confidence 457999998 7799999999999997 78887643211 011 1111111111 12245666666
Q ss_pred CCCHHHHHHhhccCCccEEEEccc
Q 012176 179 LNDAPLLTKLFDVVPFTHVLHLAA 202 (469)
Q Consensus 179 l~d~~~l~~~~~~~~~d~Vih~Aa 202 (469)
+.+.. ...++++ |+||.+.-
T Consensus 116 i~~~~--~~~~~~~--DlVi~~~D 135 (426)
T d1yovb1 116 IQDFN--DTFYRQF--HIIVCGLD 135 (426)
T ss_dssp GGGBC--HHHHTTC--SEEEECCS
T ss_pred ccchH--HHHHHhc--chheeccC
Confidence 65432 3567766 99998763
|
| >d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=90.31 E-value=0.14 Score=42.26 Aligned_cols=36 Identities=17% Similarity=0.159 Sum_probs=30.3
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCC
Q 012176 117 NGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNS 153 (469)
Q Consensus 117 ~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~ 153 (469)
+.++|+|.|| |++|-.++..|.+.|.+|.++.+...
T Consensus 2 ~~~~VvIIGg-G~~G~e~A~~l~~~g~~v~v~~~~~~ 37 (185)
T d1q1ra1 2 ANDNVVIVGT-GLAGVEVAFGLRASGWEGNIRLVGDA 37 (185)
T ss_dssp CSCEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSC
T ss_pred CCCCEEEECC-cHHHHHHHHHHHHcCCceEEEEecCc
Confidence 3578999996 99999999999999998877765554
|
| >d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain species: Escherichia coli [TaxId: 562]
Probab=90.29 E-value=0.12 Score=36.90 Aligned_cols=33 Identities=24% Similarity=0.117 Sum_probs=30.0
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCC
Q 012176 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFN 152 (469)
Q Consensus 119 ~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~ 152 (469)
|+|.|.|| |.+|+-++.+..+.|.+|++++-..
T Consensus 2 k~vgIlG~-GQLgrMl~~Aa~~LG~~v~vldp~~ 34 (78)
T d3etja2 2 KQVCVLGN-GQLGRMLRQAGEPLGIAVWPVGLDA 34 (78)
T ss_dssp EEEEEEBC-SHHHHHHHHHHGGGTEEEEEECTTS
T ss_pred CEEEEEcC-CHHHHHHHHHHHHcCCEEEEEcCCC
Confidence 68999996 9999999999999999999998644
|
| >d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: UDP-glucose dehydrogenase (UDPGDH) species: Streptococcus pyogenes [TaxId: 1314]
Probab=89.84 E-value=0.13 Score=43.58 Aligned_cols=32 Identities=28% Similarity=0.434 Sum_probs=27.2
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCC
Q 012176 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFN 152 (469)
Q Consensus 119 ~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~ 152 (469)
|+|.|.| .||+|..++..| ++|++|+++|.++
T Consensus 1 MkI~ViG-lG~vGl~~a~~~-a~g~~V~g~Din~ 32 (196)
T d1dlja2 1 MKIAVAG-SGYVGLSLGVLL-SLQNEVTIVDILP 32 (196)
T ss_dssp CEEEEEC-CSHHHHHHHHHH-TTTSEEEEECSCH
T ss_pred CEEEEEC-CChhHHHHHHHH-HCCCcEEEEECCH
Confidence 7899998 699999998755 5799999999743
|
| >d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Lysine-specific histone demethylase 1, LSD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.72 E-value=0.2 Score=45.02 Aligned_cols=36 Identities=22% Similarity=0.278 Sum_probs=31.3
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCC
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFN 152 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~ 152 (469)
.+..+|+|+|| |.-|-..+..|.++|++|+++....
T Consensus 3 ~~~~kViVIGa-G~aGL~aA~~L~~~G~~V~VlEa~~ 38 (449)
T d2dw4a2 3 KKTGKVIIIGS-GVSGLAAARQLQSFGMDVTLLEARD 38 (449)
T ss_dssp SCCCEEEEECC-BHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred CCCCcEEEECC-CHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 34567999996 9999999999999999999997644
|
| >d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein PH1109 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=89.68 E-value=0.49 Score=37.63 Aligned_cols=34 Identities=15% Similarity=0.080 Sum_probs=30.1
Q ss_pred CCCEEEEEcCC---ChhHHHHHHHHHHCCCcEEEEeC
Q 012176 117 NGMTVLVTGAA---GFVGSHCSLALKKRGDGVLGLDN 150 (469)
Q Consensus 117 ~~~~VlVtGat---G~IG~~l~~~L~~~G~~V~~~~r 150 (469)
+.++|.|.|++ +-.|..+++.|.+.|++|+.+..
T Consensus 18 ~~ksIAVVGaS~~~~~~g~~v~~~L~~~g~~v~pVnP 54 (139)
T d2d59a1 18 RYKKIALVGASPKPERDANIVMKYLLEHGYDVYPVNP 54 (139)
T ss_dssp HCCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECT
T ss_pred cCCeEEEEeecCCCCCchHHHHHHHHHCCCEEEEECC
Confidence 34789999998 78999999999999999988864
|
| >d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Acetaldehyde dehydrogenase (acylating) species: Pseudomonas sp. [TaxId: 306]
Probab=89.64 E-value=0.63 Score=37.76 Aligned_cols=32 Identities=16% Similarity=0.219 Sum_probs=21.9
Q ss_pred CCCEEEEEcCCChhHHHHH-HHHHHC-CCcEEEEe
Q 012176 117 NGMTVLVTGAAGFVGSHCS-LALKKR-GDGVLGLD 149 (469)
Q Consensus 117 ~~~~VlVtGatG~IG~~l~-~~L~~~-G~~V~~~~ 149 (469)
++++|.|.| +|.||+.+. +.|... ..+++.+.
T Consensus 3 kkirvaIIG-aG~ig~~~~~~~l~~~~~~el~ava 36 (157)
T d1nvmb1 3 QKLKVAIIG-SGNIGTDLMIKVLRNAKYLEMGAMV 36 (157)
T ss_dssp SCEEEEEEC-CSHHHHHHHHHHHHHCSSEEEEEEE
T ss_pred CCcEEEEEc-CcHHHHHHHHHHHhhCCcceEEEEE
Confidence 457999999 899998654 554444 34666653
|
| >d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GDI-like N domain domain: Guanine nucleotide dissociation inhibitor, GDI species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.63 E-value=0.16 Score=43.32 Aligned_cols=32 Identities=31% Similarity=0.388 Sum_probs=29.3
Q ss_pred EEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCC
Q 012176 121 VLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNS 153 (469)
Q Consensus 121 VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~ 153 (469)
|+|+|| |.-|...|..|.++|++|.++.+.+.
T Consensus 8 viViGa-G~~Gl~~A~~La~~G~~V~vlE~~~~ 39 (297)
T d2bcgg1 8 VIVLGT-GITECILSGLLSVDGKKVLHIDKQDH 39 (297)
T ss_dssp EEEECC-SHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred EEEECc-CHHHHHHHHHHHHCCCCEEEEcCCCC
Confidence 789895 99999999999999999999998654
|
| >d1fmta2 c.65.1.1 (A:1-206) Methionyl-tRNAfmet formyltransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Formyltransferase superfamily: Formyltransferase family: Formyltransferase domain: Methionyl-tRNAfmet formyltransferase species: Escherichia coli [TaxId: 562]
Probab=89.40 E-value=0.32 Score=41.51 Aligned_cols=86 Identities=10% Similarity=0.027 Sum_probs=54.4
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhH----HHHHHHhhccCCeEEEEecCCCHHHHHHhhccC
Q 012176 117 NGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSL----KRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV 192 (469)
Q Consensus 117 ~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~----~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~ 192 (469)
+.|+|++.| ++..+..+.+.|++.|++|.++.-.+....... ...........++.....+..+.+...+.++..
T Consensus 2 ~~mKI~f~G-~~~~~~~~L~~L~~~~~~i~~Vit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (206)
T d1fmta2 2 ESLRIIFAG-TPDFAARHLDALLSSGHNVVGVFTQPDRPAGRGKKLMPSPVKVLAEEKGLPVFQPVSLRPQENQQLVAEL 80 (206)
T ss_dssp CCCEEEEEE-CSHHHHHHHHHHHHTTCEEEEEECCCCBC------CBCCHHHHHHHHTTCCEECCSCSCSHHHHHHHHHT
T ss_pred CCcEEEEEC-CCHHHHHHHHHHHhCCCCEEEEEeCCCcccccCccccccchhhhhhccCccccccccccchhhHHHHhhh
Confidence 468899998 578899999999999999876653221110000 001111222335666666666666677788888
Q ss_pred CccEEEEcccc
Q 012176 193 PFTHVLHLAAQ 203 (469)
Q Consensus 193 ~~d~Vih~Aa~ 203 (469)
++|++|-..+.
T Consensus 81 ~~d~~v~~~~~ 91 (206)
T d1fmta2 81 QADVMVVVAYG 91 (206)
T ss_dssp TCSEEEEESCC
T ss_pred cceEEEeeccc
Confidence 88998877654
|
| >d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=89.21 E-value=0.2 Score=46.05 Aligned_cols=37 Identities=27% Similarity=0.247 Sum_probs=31.7
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCC--CcEEEEeCCCC
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRG--DGVLGLDNFNS 153 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G--~~V~~~~r~~~ 153 (469)
...|+|+|+|| |.-|-.++..|+++| ++|+++.|.+.
T Consensus 2 ~~~KrVaIIGa-G~sGl~~A~~L~~~~~~~~v~vfEk~~~ 40 (335)
T d2gv8a1 2 PTIRKIAIIGA-GPSGLVTAKALLAEKAFDQVTLFERRGS 40 (335)
T ss_dssp CSCCEEEEECC-SHHHHHHHHHHHTTTCCSEEEEECSSSS
T ss_pred CCCCeEEEECc-CHHHHHHHHHHHHhCCCCCEEEEECCCC
Confidence 45689999997 999999999999876 69999998653
|
| >d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=89.01 E-value=0.039 Score=48.03 Aligned_cols=30 Identities=37% Similarity=0.517 Sum_probs=26.2
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCCcEEEEe
Q 012176 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLD 149 (469)
Q Consensus 119 ~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~ 149 (469)
|+|+|+|| |.+|..++.+|+++|++|+++.
T Consensus 1 mkV~VIGa-Gi~GlstA~~L~~~G~~v~v~e 30 (246)
T d1kifa1 1 MRVVVIGA-GVIGLSTALCIHERYHSVLQPL 30 (246)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHHTTTSSSC
T ss_pred CEEEEECc-hHHHHHHHHHHHHCCCCceEEe
Confidence 78999997 9999999999999998765443
|
| >d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Diaminopimelic acid dehydrogenase (DAPDH) species: Corynebacterium glutamicum [TaxId: 1718]
Probab=88.95 E-value=0.78 Score=37.54 Aligned_cols=33 Identities=18% Similarity=0.355 Sum_probs=25.8
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHC-CCcEEEEeC
Q 012176 117 NGMTVLVTGAAGFVGSHCSLALKKR-GDGVLGLDN 150 (469)
Q Consensus 117 ~~~~VlVtGatG~IG~~l~~~L~~~-G~~V~~~~r 150 (469)
++++|.|.|. |.+|+.+++.|.+. +.+++++..
T Consensus 2 ~kirvgiiG~-G~ig~~~~~~l~~~~~~elvav~~ 35 (170)
T d1f06a1 2 TNIRVAIVGY-GNLGRSVEKLIAKQPDMDLVGIFS 35 (170)
T ss_dssp CCEEEEEECC-SHHHHHHHHHHTTCSSEEEEEEEE
T ss_pred CcceEEEECC-hHHHHHHHHHHHhCCCcEEEEEEe
Confidence 4578999995 99999999999876 566665543
|
| >d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Leucine dehydrogenase species: Bacillus sphaericus [TaxId: 1421]
Probab=88.74 E-value=0.71 Score=40.01 Aligned_cols=35 Identities=26% Similarity=0.319 Sum_probs=32.1
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeC
Q 012176 115 RPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDN 150 (469)
Q Consensus 115 ~~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r 150 (469)
+.++++|+|-| -|-+|+++++.|.+.|.+|++.+.
T Consensus 36 ~l~g~~v~IqG-~GnVG~~~a~~L~~~Gakvv~~d~ 70 (230)
T d1leha1 36 SLEGLAVSVQG-LGNVAKALCKKLNTEGAKLVVTDV 70 (230)
T ss_dssp CCTTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECS
T ss_pred CCCCCEEEEEC-CCHHHHHHHHHHHHCCCEEEeecc
Confidence 47899999999 599999999999999999999876
|
| >d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Sarcosine oxidase species: Bacillus sp., strain b0618 [TaxId: 1409]
Probab=88.62 E-value=0.2 Score=44.46 Aligned_cols=31 Identities=39% Similarity=0.592 Sum_probs=28.7
Q ss_pred EEEEcCCChhHHHHHHHHHHCCCcEEEEeCCC
Q 012176 121 VLVTGAAGFVGSHCSLALKKRGDGVLGLDNFN 152 (469)
Q Consensus 121 VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~ 152 (469)
|+|+|| |..|..++.+|.++|++|+++++..
T Consensus 6 vvIIGa-Gi~Gls~A~~La~~G~~V~viE~~~ 36 (281)
T d2gf3a1 6 VIVVGA-GSMGMAAGYQLAKQGVKTLLVDAFD 36 (281)
T ss_dssp EEEECC-SHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred EEEECc-CHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 889996 9999999999999999999999854
|
| >d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=88.61 E-value=0.2 Score=42.15 Aligned_cols=34 Identities=18% Similarity=0.124 Sum_probs=28.9
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCC--CcEEEEeCCCC
Q 012176 119 MTVLVTGAAGFVGSHCSLALKKRG--DGVLGLDNFNS 153 (469)
Q Consensus 119 ~~VlVtGatG~IG~~l~~~L~~~G--~~V~~~~r~~~ 153 (469)
|||+|.|| |++|-.++..|.+.+ .+|+++.|...
T Consensus 1 ~KVvIIGg-G~~G~e~A~~l~~~~~~~~V~v~~~~~~ 36 (198)
T d1nhpa1 1 MKVIVLGS-SHGGYEAVEELLNLHPDAEIQWYEKGDF 36 (198)
T ss_dssp CEEEEECS-SHHHHHHHHHHHHHCTTSEEEEEESSSS
T ss_pred CEEEEECC-cHHHHHHHHHHHhcCCCCeEEEEeCCCc
Confidence 78999997 999999999999874 57888887653
|
| >d1r0ka2 c.2.1.3 (A:3-126,A:265-290) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Zymomonas mobilis [TaxId: 542]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase species: Zymomonas mobilis [TaxId: 542]
Probab=88.55 E-value=0.84 Score=36.70 Aligned_cols=34 Identities=26% Similarity=0.274 Sum_probs=28.8
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHC--CCcEEEEeCC
Q 012176 118 GMTVLVTGAAGFVGSHCSLALKKR--GDGVLGLDNF 151 (469)
Q Consensus 118 ~~~VlVtGatG~IG~~l~~~L~~~--G~~V~~~~r~ 151 (469)
.|+|.|.|+||-||....+-+.+. .++|.+++-+
T Consensus 2 pK~I~IlGsTGSIG~~tL~Vi~~~~d~f~v~~lsa~ 37 (150)
T d1r0ka2 2 PRTVTVLGATGSIGHSTLDLIERNLDRYQVIALTAN 37 (150)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHTGGGEEEEEEEES
T ss_pred CcEEEEECCCcHHHHHHHHHHHcCCCCcEEEEEEeC
Confidence 479999999999999999999876 5788887643
|
| >d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Transcriptional repressor Rex, C-terminal domain domain: Transcriptional repressor Rex, C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=88.44 E-value=0.34 Score=37.84 Aligned_cols=94 Identities=11% Similarity=-0.001 Sum_probs=58.2
Q ss_pred CEEEEEcCCChhHHHHHHHHHH-CCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHHHHHHhhccCCccEE
Q 012176 119 MTVLVTGAAGFVGSHCSLALKK-RGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTHV 197 (469)
Q Consensus 119 ~~VlVtGatG~IG~~l~~~L~~-~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~d~V 197 (469)
.+|+|.|| |.+|+.|++++.. .|++++++.-.... .....-.++.++. .+.++++.+. ..+++
T Consensus 4 ~~v~I~Ga-G~~G~~l~~~l~~~~~~~iv~fiDdd~~---------k~G~~I~Gi~V~~-----~~~l~~~~~~-~i~ia 67 (126)
T d2dt5a2 4 WGLCIVGM-GRLGSALADYPGFGESFELRGFFDVDPE---------KVGRPVRGGVIEH-----VDLLPQRVPG-RIEIA 67 (126)
T ss_dssp EEEEEECC-SHHHHHHHHCSCCCSSEEEEEEEESCTT---------TTTCEETTEEEEE-----GGGHHHHSTT-TCCEE
T ss_pred ceEEEEcC-CHHHHHHHHhHhhcCCcEEEEEEeCchH---------hcCCEECCEEEec-----HHHHHHHHhh-cccEE
Confidence 37999997 9999999998754 47788777643221 0111122666653 3456666654 34555
Q ss_pred EEcccccChhhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcCcc
Q 012176 198 LHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSS 247 (469)
Q Consensus 198 ih~Aa~~~~~~~~~~~~~~~~~Nv~~~~~ll~aa~~~~~~~~~V~~SS~~ 247 (469)
+-+... ...+.+++.|.+.|++ .+..++...
T Consensus 68 i~~i~~------------------~~~~~I~d~l~~~gIk-~I~~f~~~~ 98 (126)
T d2dt5a2 68 LLTVPR------------------EAAQKAADLLVAAGIK-GILNFAPVV 98 (126)
T ss_dssp EECSCH------------------HHHHHHHHHHHHHTCC-EEEECSSSC
T ss_pred EEeCCH------------------HHHHHHHHHHHHcCCC-EEeecCcee
Confidence 544421 1235678888888987 787776544
|
| >d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Cow (Bos taurus) [TaxId: 9913]
Probab=87.95 E-value=0.8 Score=41.08 Aligned_cols=35 Identities=26% Similarity=0.283 Sum_probs=31.2
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeC
Q 012176 115 RPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDN 150 (469)
Q Consensus 115 ~~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r 150 (469)
..++++|+|-|- |-+|+++++.|.+.|.+|++++-
T Consensus 33 ~L~gktvaIqGf-GnVG~~~A~~L~e~Gakvv~vsD 67 (293)
T d1hwxa1 33 GFGDKTFAVQGF-GNVGLHSMRYLHRFGAKCVAVGE 67 (293)
T ss_dssp SSTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEEE
T ss_pred CCCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEEc
Confidence 368899999995 99999999999999999988763
|
| >d1y81a1 c.2.1.8 (A:6-121) Hypothetical protein PF0725 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein PF0725 species: Pyrococcus furiosus [TaxId: 2261]
Probab=87.63 E-value=1.3 Score=33.69 Aligned_cols=32 Identities=22% Similarity=0.240 Sum_probs=28.5
Q ss_pred CEEEEEcCC---ChhHHHHHHHHHHCCCcEEEEeC
Q 012176 119 MTVLVTGAA---GFVGSHCSLALKKRGDGVLGLDN 150 (469)
Q Consensus 119 ~~VlVtGat---G~IG~~l~~~L~~~G~~V~~~~r 150 (469)
|+|.|.|++ +-.|..+.+.|++.|++|+.+..
T Consensus 2 KsIAVvGaS~~~~k~g~~v~~~L~~~g~~V~pVnP 36 (116)
T d1y81a1 2 RKIALVGASKNPAKYGNIILKDLLSKGFEVLPVNP 36 (116)
T ss_dssp CEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECT
T ss_pred cEEEEEcccCCCCCcHHHHHHHHHHCCCEEEEEcc
Confidence 689999998 77999999999999999988754
|
| >d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monooxygenase PhzS species: Pseudomonas aeruginosa [TaxId: 287]
Probab=87.52 E-value=0.32 Score=42.59 Aligned_cols=34 Identities=35% Similarity=0.634 Sum_probs=30.3
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCC-CcEEEEeCCCC
Q 012176 119 MTVLVTGAAGFVGSHCSLALKKRG-DGVLGLDNFNS 153 (469)
Q Consensus 119 ~~VlVtGatG~IG~~l~~~L~~~G-~~V~~~~r~~~ 153 (469)
++|+|+|| |..|..++..|.+.| ++|+++.+...
T Consensus 2 ~~V~IvGa-G~aGl~~A~~L~~~Gi~~V~V~Er~~~ 36 (288)
T d3c96a1 2 IDILIAGA-GIGGLSCALALHQAGIGKVTLLESSSE 36 (288)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCSEEEEEESSSS
T ss_pred CEEEEECc-CHHHHHHHHHHHhCCCCeEEEEeCCCC
Confidence 68999997 999999999999999 58999998554
|
| >d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: N,N-dimethylglycine oxidase species: Arthrobacter globiformis [TaxId: 1665]
Probab=87.49 E-value=0.24 Score=44.52 Aligned_cols=32 Identities=31% Similarity=0.447 Sum_probs=28.6
Q ss_pred EEEEEcCCChhHHHHHHHHHHCCC-cEEEEeCCC
Q 012176 120 TVLVTGAAGFVGSHCSLALKKRGD-GVLGLDNFN 152 (469)
Q Consensus 120 ~VlVtGatG~IG~~l~~~L~~~G~-~V~~~~r~~ 152 (469)
+|+|+|| |.+|..++.+|.++|. +|++++|+.
T Consensus 3 dViIIGa-Gi~G~s~A~~La~~G~~~V~liE~~~ 35 (305)
T d1pj5a2 3 RIVIIGA-GIVGTNLADELVTRGWNNITVLDQGP 35 (305)
T ss_dssp CEEEECC-SHHHHHHHHHHHHTTCCCEEEECSSC
T ss_pred CEEEECc-CHHHHHHHHHHHHcCCCcEEEEeCCC
Confidence 5899997 9999999999999995 799999854
|
| >d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=87.28 E-value=0.22 Score=45.18 Aligned_cols=34 Identities=29% Similarity=0.541 Sum_probs=30.3
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCC
Q 012176 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNS 153 (469)
Q Consensus 119 ~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~ 153 (469)
..|+|+|| |.-|..+|..|.+.|++|.++.+.+.
T Consensus 2 ~dv~IIGa-G~sGl~~A~~L~~~g~~V~iiEk~~~ 35 (298)
T d1i8ta1 2 YDYIIVGS-GLFGAVCANELKKLNKKVLVIEKRNH 35 (298)
T ss_dssp EEEEEECC-SHHHHHHHHHHGGGTCCEEEECSSSS
T ss_pred ccEEEECC-cHHHHHHHHHHHhCCCcEEEEECCCC
Confidence 36899996 99999999999999999999987554
|
| >d1xk7a1 c.123.1.1 (A:4-405) Crotonobetainyl-CoA:carnitine CoA-transferase, CaiB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: CoA-transferase family III (CaiB/BaiF) superfamily: CoA-transferase family III (CaiB/BaiF) family: CoA-transferase family III (CaiB/BaiF) domain: Crotonobetainyl-CoA:carnitine CoA-transferase, CaiB species: Escherichia coli [TaxId: 562]
Probab=86.57 E-value=2 Score=40.15 Aligned_cols=84 Identities=12% Similarity=0.201 Sum_probs=57.3
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhccCCeEEEEecCCCHH---HHHHhhccC
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAP---LLTKLFDVV 192 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~---~l~~~~~~~ 192 (469)
.+|.+|+=.+ ...-|-+..+.|.+.|++|+=+.+................. ..+-+.+..|+.+++ .+.++++.+
T Consensus 9 L~GirVld~~-~~~agp~~~~~Lad~GAeVIkvE~p~~gd~~r~~~~~~~~~-n~~K~si~ldl~~~~G~~~~~~Lv~~a 86 (402)
T d1xk7a1 9 LAGLRVVFSG-IEIAGPFAGQMFAEWGAEVIWIENVAWADTIRVQPNYPQLS-RRNLHALSLNIFKDEGREAFLKLMETT 86 (402)
T ss_dssp TTTCEEEEEC-CSSHHHHHHHHHHHTTCEEEEEECSSSCCGGGGSSSHHHHH-TTTCEEEEECTTSHHHHHHHHHHHTTC
T ss_pred CCCCEEEEeC-ChhHHHHHHHHHHHhCCeEEEECCCCCCCccccCCchhHHh-CCCCeEEEEeCcCHHHHHHHHHHHhhc
Confidence 5778888766 46669999999999999999998644221111111111111 235678899998875 477888888
Q ss_pred CccEEEEcccc
Q 012176 193 PFTHVLHLAAQ 203 (469)
Q Consensus 193 ~~d~Vih~Aa~ 203 (469)
|+||+|--.
T Consensus 87 --Dv~i~n~rp 95 (402)
T d1xk7a1 87 --DIFIEASKG 95 (402)
T ss_dssp --SEEEEECSS
T ss_pred --CCceeeecc
Confidence 999999653
|
| >d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=86.52 E-value=0.4 Score=38.77 Aligned_cols=30 Identities=20% Similarity=0.155 Sum_probs=24.8
Q ss_pred EEEEEcCCChhHHHHHHHHHHCCCcEEEEeCC
Q 012176 120 TVLVTGAAGFVGSHCSLALKKRGDGVLGLDNF 151 (469)
Q Consensus 120 ~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~ 151 (469)
||.+.|- |.+|..+++.|++.|+.| +..|.
T Consensus 2 kIg~IGl-G~MG~~ma~~L~~~g~~~-~~~~~ 31 (156)
T d2cvza2 2 KVAFIGL-GAMGYPMAGHLARRFPTL-VWNRT 31 (156)
T ss_dssp CEEEECC-STTHHHHHHHHHTTSCEE-EECSS
T ss_pred eEEEEeH-HHHHHHHHHHHHhCCCEE-EEeCC
Confidence 5888895 999999999999999866 45553
|
| >d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Polyamine oxidase species: Maize (Zea mays) [TaxId: 4577]
Probab=85.92 E-value=0.34 Score=41.49 Aligned_cols=32 Identities=31% Similarity=0.464 Sum_probs=28.6
Q ss_pred EEEEEcCCChhHHHHHHHHHHCCC-cEEEEeCCC
Q 012176 120 TVLVTGAAGFVGSHCSLALKKRGD-GVLGLDNFN 152 (469)
Q Consensus 120 ~VlVtGatG~IG~~l~~~L~~~G~-~V~~~~r~~ 152 (469)
+|+|+|| |.-|-..+..|.++|. +|+++.+..
T Consensus 2 ~V~IIGa-G~aGL~aA~~L~~~G~~~V~vlE~~~ 34 (347)
T d1b5qa1 2 RVIVVGA-GMSGISAAKRLSEAGITDLLILEATD 34 (347)
T ss_dssp CEEEECC-BHHHHHHHHHHHHTTCCCEEEECSSS
T ss_pred CEEEECC-cHHHHHHHHHHHhCCCCcEEEEECCC
Confidence 5899997 9999999999999995 799998754
|
| >d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=85.72 E-value=0.42 Score=38.64 Aligned_cols=32 Identities=22% Similarity=0.188 Sum_probs=27.2
Q ss_pred EEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCC
Q 012176 120 TVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNS 153 (469)
Q Consensus 120 ~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~ 153 (469)
||+|.|| |++|-.++..|. ++.+|+++.+...
T Consensus 2 rVvIIGg-G~~G~e~A~~l~-~~~~Vtvv~~~~~ 33 (167)
T d1xhca1 2 KVVIVGN-GPGGFELAKQLS-QTYEVTVIDKEPV 33 (167)
T ss_dssp EEEEECC-SHHHHHHHHHHT-TTSEEEEECSSSS
T ss_pred eEEEECC-cHHHHHHHHHHH-cCCCEEEEecccc
Confidence 6899997 999999999985 5789999987653
|
| >d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: p-Hydroxybenzoate hydroxylase, PHBH species: Pseudomonas aeruginosa [TaxId: 287]
Probab=85.50 E-value=0.3 Score=43.47 Aligned_cols=32 Identities=28% Similarity=0.255 Sum_probs=29.4
Q ss_pred EEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCC
Q 012176 120 TVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFN 152 (469)
Q Consensus 120 ~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~ 152 (469)
+|+|+|| |-.|..++..|.+.|++|+++.+..
T Consensus 4 ~V~IvGa-Gp~Gl~~A~~L~~~G~~v~vlE~~~ 35 (292)
T d1k0ia1 4 QVAIIGA-GPSGLLLGQLLHKAGIDNVILERQT 35 (292)
T ss_dssp SEEEECC-SHHHHHHHHHHHHHTCCEEEECSSC
T ss_pred CEEEECc-CHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 5999997 9999999999999999999999843
|
| >d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Phenylacetone monooxygenase species: Thermobifida fusca [TaxId: 2021]
Probab=85.47 E-value=0.44 Score=43.14 Aligned_cols=36 Identities=31% Similarity=0.458 Sum_probs=31.7
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCC
Q 012176 117 NGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNS 153 (469)
Q Consensus 117 ~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~ 153 (469)
+...|+|+|| |+.|-.++..|.+.|.+|+++++..+
T Consensus 6 ~~~dV~IIGA-G~sGl~~a~~L~~~G~~v~i~Ek~~~ 41 (298)
T d1w4xa1 6 EEVDVLVVGA-GFSGLYALYRLRELGRSVHVIETAGD 41 (298)
T ss_dssp SEEEEEEECC-SHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred CCCCEEEECc-cHHHHHHHHHHHhCCCCEEEEEcCCC
Confidence 4457999997 99999999999999999999998553
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=84.86 E-value=2.7 Score=34.10 Aligned_cols=77 Identities=18% Similarity=0.069 Sum_probs=46.6
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhc--------------cCCeEEEEecCCC
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQ--------------KHQVFIVEGDLND 181 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~--------------~~~v~~v~~Dl~d 181 (469)
..+.+||..|+. .|+ .+..|+++|++|+++|.++. ++...+..... ...+.++.+|..+
T Consensus 19 ~~~~rvLd~GCG--~G~-~a~~la~~G~~V~gvD~S~~----~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 91 (201)
T d1pjza_ 19 VPGARVLVPLCG--KSQ-DMSWLSGQGYHVVGAELSEA----AVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFA 91 (201)
T ss_dssp CTTCEEEETTTC--CSH-HHHHHHHHCCEEEEEEECHH----HHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSS
T ss_pred CCCCEEEEecCc--CCH-HHHHHHHcCCceEeecccHH----HHHHHHHHhccccchhhhhhhhhccccccceecccccc
Confidence 467899999964 233 45566778999999997543 44444433211 2345778888766
Q ss_pred HHHHHHhhccCCccEEEEcccc
Q 012176 182 APLLTKLFDVVPFTHVLHLAAQ 203 (469)
Q Consensus 182 ~~~l~~~~~~~~~d~Vih~Aa~ 203 (469)
..... ...+|+|+.....
T Consensus 92 l~~~~----~~~~D~i~~~~~l 109 (201)
T d1pjza_ 92 LTARD----IGHCAAFYDRAAM 109 (201)
T ss_dssp STHHH----HHSEEEEEEESCG
T ss_pred ccccc----ccceeEEEEEeee
Confidence 43211 1134777765543
|
| >d2bw0a2 c.65.1.1 (A:1-203) 10-formyltetrahydrofolate dehydrogenase domain 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Formyltransferase superfamily: Formyltransferase family: Formyltransferase domain: 10-formyltetrahydrofolate dehydrogenase domain 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.74 E-value=0.95 Score=38.31 Aligned_cols=78 Identities=15% Similarity=0.173 Sum_probs=46.5
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCC-CCCh-hHHHHHHHhhccCCeEEEE------ecCCCHHHHHHhhc
Q 012176 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNS-YYDP-SLKRARQKLLQKHQVFIVE------GDLNDAPLLTKLFD 190 (469)
Q Consensus 119 ~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~-~~~~-~~~~~~~~~~~~~~v~~v~------~Dl~d~~~l~~~~~ 190 (469)
|||++.| ++..|..+++.|.+.|++|.++.-.++ +... .+..... ..++.+.. -+..+++.++ .++
T Consensus 1 MkI~~~G-~~~~~~~~l~~L~~~~~~i~~V~t~p~~~~~~~~v~~~a~----~~~ipv~~~~~~~~~~~~~~~~~~-~l~ 74 (203)
T d2bw0a2 1 MKIAVIG-QSLFGQEVYCHLRKEGHEVVGVFTVPDKDGKADPLGLEAE----KDGVPVFKYSRWRAKGQALPDVVA-KYQ 74 (203)
T ss_dssp CEEEEEC-CHHHHHHHHHHHHHTTCEEEEEEECCCCSSCCCHHHHHHH----HHTCCEEECSCCEETTEECHHHHH-HHH
T ss_pred CEEEEEc-CCHHHHHHHHHHHHCCCcEEEEEcCCCcCcCCChhhhhHH----hcCCcccccccccccccccHHHHH-HHH
Confidence 7899998 578899999999999999986653221 1111 1111111 11333322 2344455444 456
Q ss_pred cCCccEEEEccc
Q 012176 191 VVPFTHVLHLAA 202 (469)
Q Consensus 191 ~~~~d~Vih~Aa 202 (469)
..++|++|-...
T Consensus 75 ~~~~Dliv~~~~ 86 (203)
T d2bw0a2 75 ALGAELNVLPFC 86 (203)
T ss_dssp TTCCSEEEESSC
T ss_pred HhCCCceEEeec
Confidence 668899988764
|
| >d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monoamine oxidase B species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.70 E-value=0.51 Score=42.54 Aligned_cols=31 Identities=29% Similarity=0.433 Sum_probs=28.4
Q ss_pred EEEEcCCChhHHHHHHHHHHCCCcEEEEeCCC
Q 012176 121 VLVTGAAGFVGSHCSLALKKRGDGVLGLDNFN 152 (469)
Q Consensus 121 VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~ 152 (469)
|+|+|| |.-|-..+..|.++|++|+++.+.+
T Consensus 2 ViVIGa-G~aGL~aA~~L~~~G~~V~VlE~~~ 32 (383)
T d2v5za1 2 VVVVGG-GISGMAAAKLLHDSGLNVVVLEARD 32 (383)
T ss_dssp EEEECC-BHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred EEEECC-CHHHHHHHHHHHhCCCCEEEEecCC
Confidence 789996 9999999999999999999998754
|
| >d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=82.99 E-value=1.7 Score=35.64 Aligned_cols=31 Identities=26% Similarity=0.464 Sum_probs=24.7
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHCC-CcEEEEe
Q 012176 118 GMTVLVTGAAGFVGSHCSLALKKRG-DGVLGLD 149 (469)
Q Consensus 118 ~~~VlVtGatG~IG~~l~~~L~~~G-~~V~~~~ 149 (469)
.+||.|-| -|-||+.+++.+.++. .+|+.+.
T Consensus 2 ~irIaING-fGRIGR~v~Ral~~~~dieiVaIN 33 (172)
T d2czca2 2 KVKVGVNG-YGTIGKRVAYAVTKQDDMELIGIT 33 (172)
T ss_dssp CEEEEEEC-CSHHHHHHHHHHHTCTTEEEEEEE
T ss_pred cEEEEEEC-CCHHHHHHHHHHHhCCCceEEEEe
Confidence 46899999 5999999999998864 4666554
|
| >d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=82.50 E-value=0.3 Score=40.36 Aligned_cols=32 Identities=25% Similarity=0.164 Sum_probs=26.2
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCC
Q 012176 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNF 151 (469)
Q Consensus 119 ~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~ 151 (469)
.+|+|.|| |++|-.++..|.+.|.+|.++.+.
T Consensus 4 a~VvIIGg-G~~G~e~A~~l~~~g~~v~i~~~~ 35 (183)
T d1d7ya1 4 APVVVLGA-GLASVSFVAELRQAGYQGLITVVG 35 (183)
T ss_dssp SSEEEECC-SHHHHHHHHHHHHHTCCSCEEEEE
T ss_pred CCEEEECc-cHHHHHHHHHHHhcCCceEEEEEe
Confidence 35899996 999999999999999876665543
|
| >d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 3 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=82.40 E-value=2 Score=34.31 Aligned_cols=36 Identities=22% Similarity=0.204 Sum_probs=29.8
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCc-EEEEeCCC
Q 012176 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDG-VLGLDNFN 152 (469)
Q Consensus 116 ~~~~~VlVtGatG~IG~~l~~~L~~~G~~-V~~~~r~~ 152 (469)
.-+++|+|+|| |..|--.+..+++.|.+ |+++.|..
T Consensus 43 ~~~~kVvVIGG-GdtA~D~A~~a~r~GA~~V~vi~rr~ 79 (153)
T d1gtea3 43 SIRGAVIVLGA-GDTAFDCATSALRCGARRVFLVFRKG 79 (153)
T ss_dssp CCCSEEEEECS-SHHHHHHHHHHHHTTCSEEEEECSSC
T ss_pred cCCCEEEEECC-ChhHHHHHHHHHHcCCcceeEEEeCC
Confidence 34568999996 99999999999999875 77887754
|
| >d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Pyrobaculum islandicum [TaxId: 2277]
Probab=81.52 E-value=0.83 Score=39.89 Aligned_cols=35 Identities=31% Similarity=0.466 Sum_probs=31.4
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeC
Q 012176 115 RPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDN 150 (469)
Q Consensus 115 ~~~~~~VlVtGatG~IG~~l~~~L~~~G~~V~~~~r 150 (469)
..++++|+|-| -|-+|+++++.|.+.|.+|++++-
T Consensus 28 ~l~g~~v~IqG-fGnVG~~~a~~L~~~Gakvv~vsD 62 (242)
T d1v9la1 28 GIEGKTVAIQG-MGNVGRWTAYWLEKMGAKVIAVSD 62 (242)
T ss_dssp CCTTCEEEEEC-CSHHHHHHHHHHHTTTCEEEEEEC
T ss_pred CCCCCEEEEEC-CCHHHHHHHHHHHHcCCeEEEeec
Confidence 36889999998 599999999999999999988764
|
| >d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: HI0933 N-terminal domain-like domain: Flavoprotein BC4706 species: Bacillus cereus [TaxId: 1396]
Probab=81.28 E-value=0.76 Score=39.59 Aligned_cols=32 Identities=34% Similarity=0.458 Sum_probs=29.2
Q ss_pred EEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCC
Q 012176 121 VLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNS 153 (469)
Q Consensus 121 VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~~ 153 (469)
|+|+|| |..|...+..|.++|++|.++++...
T Consensus 5 ViIIGa-G~aGl~aA~~la~~G~~V~liEk~~~ 36 (251)
T d2i0za1 5 VIVIGG-GPSGLMAAIGAAEEGANVLLLDKGNK 36 (251)
T ss_dssp EEEECC-SHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred EEEECc-CHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence 889997 99999999999999999999998654
|
| >d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Adrenodoxin reductase of mitochondrial p450 systems species: Cow (Bos taurus) [TaxId: 9913]
Probab=81.09 E-value=2.4 Score=35.77 Aligned_cols=35 Identities=20% Similarity=0.047 Sum_probs=30.1
Q ss_pred CEEEEEcCCChhHHHHHHHHHHC--CCcEEEEeCCCCC
Q 012176 119 MTVLVTGAAGFVGSHCSLALKKR--GDGVLGLDNFNSY 154 (469)
Q Consensus 119 ~~VlVtGatG~IG~~l~~~L~~~--G~~V~~~~r~~~~ 154 (469)
.+|+|+|| |--|...|..|.+. |++|+++++....
T Consensus 2 ~kv~iIGa-GpaGl~aA~~L~~~~~~~~V~v~e~~~~~ 38 (230)
T d1cjca2 2 PQICVVGS-GPAGFYTAQHLLKHHSRAHVDIYEKQLVP 38 (230)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHCSSCEEEEECSSSSS
T ss_pred CeEEEECc-cHHHHHHHHHHHhcCCCCeEEEEeCCCCC
Confidence 47999996 99999999999875 7899999987653
|
| >d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=80.14 E-value=3.1 Score=34.18 Aligned_cols=31 Identities=26% Similarity=0.422 Sum_probs=25.4
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCC-CcEEEEeC
Q 012176 119 MTVLVTGAAGFVGSHCSLALKKRG-DGVLGLDN 150 (469)
Q Consensus 119 ~~VlVtGatG~IG~~l~~~L~~~G-~~V~~~~r 150 (469)
.||.|-| .|-||+.+++.+.+++ .+|+++..
T Consensus 2 IKVaING-fGRIGR~v~Ral~~~~dievVaInd 33 (178)
T d1b7go1 2 VNVAVNG-YGTIGKRVADAIIKQPDMKLVGVAK 33 (178)
T ss_dssp EEEEEEC-CSHHHHHHHHHHHTCTTEEEEEEEC
T ss_pred eEEEEEC-CCHHHHHHHHHHHhCCCCEEEEEEC
Confidence 4799998 6999999999999874 57777653
|
| >d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Cholesterol oxidase of GMC family species: Streptomyces sp. [TaxId: 1931]
Probab=80.08 E-value=0.77 Score=42.19 Aligned_cols=31 Identities=26% Similarity=0.337 Sum_probs=28.5
Q ss_pred EEEEcCCChhHHHHHHHHHHCCCcEEEEeCCC
Q 012176 121 VLVTGAAGFVGSHCSLALKKRGDGVLGLDNFN 152 (469)
Q Consensus 121 VlVtGatG~IG~~l~~~L~~~G~~V~~~~r~~ 152 (469)
|+|+| +|+-|..+|.+|.+.|++|.++.+..
T Consensus 5 VIVVG-sG~aG~v~A~rLaeaG~~VlvLEaG~ 35 (367)
T d1n4wa1 5 AVVIG-TGYGAAVSALRLGEAGVQTLMLEMGQ 35 (367)
T ss_dssp EEEEC-CSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred EEEeC-cCHHHHHHHHHHHHCcCeEEEEecCC
Confidence 78889 59999999999999999999999864
|