Citrus Sinensis ID: 012221
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 468 | 2.2.26 [Sep-21-2011] | |||||||
| P52410 | 473 | 3-oxoacyl-[acyl-carrier-p | yes | no | 1.0 | 0.989 | 0.875 | 0.0 | |
| P23902 | 462 | 3-oxoacyl-[acyl-carrier-p | N/A | no | 0.899 | 0.911 | 0.848 | 0.0 | |
| Q9C9P4 | 541 | 3-oxoacyl-[acyl-carrier-p | no | no | 0.995 | 0.861 | 0.527 | 1e-139 | |
| Q9KQH9 | 414 | 3-oxoacyl-[acyl-carrier-p | yes | no | 0.867 | 0.980 | 0.483 | 1e-106 | |
| P73283 | 416 | 3-oxoacyl-[acyl-carrier-p | N/A | no | 0.876 | 0.985 | 0.471 | 1e-105 | |
| P55338 | 415 | 3-oxoacyl-[acyl-carrier-p | yes | no | 0.867 | 0.978 | 0.464 | 1e-103 | |
| Q83E37 | 414 | 3-oxoacyl-[acyl-carrier-p | yes | no | 0.869 | 0.983 | 0.467 | 1e-102 | |
| O34340 | 413 | 3-oxoacyl-[acyl-carrier-p | yes | no | 0.873 | 0.990 | 0.454 | 1e-101 | |
| Q8NXE1 | 414 | 3-oxoacyl-[acyl-carrier-p | yes | no | 0.871 | 0.985 | 0.452 | 3e-99 | |
| Q6GAU2 | 414 | 3-oxoacyl-[acyl-carrier-p | yes | no | 0.871 | 0.985 | 0.452 | 3e-99 |
| >sp|P52410|KASC1_ARATH 3-oxoacyl-[acyl-carrier-protein] synthase I, chloroplastic OS=Arabidopsis thaliana GN=KAS1 PE=1 SV=2 | Back alignment and function desciption |
|---|
Score = 845 bits (2182), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 414/473 (87%), Positives = 438/473 (92%), Gaps = 5/473 (1%)
Query: 1 MQSLQSSSLHASPLNPLRSKSN---FNLPNNARPTARRV-SFITAS-STKSAPKREKDPK 55
MQ+LQSSSL ASP NPLR SN L NARP R+ SFI+AS ST SAPKRE DPK
Sbjct: 1 MQALQSSSLRASPPNPLRLPSNRQSHQLITNARPLRRQQRSFISASASTVSAPKRETDPK 60
Query: 56 KRVVITGMGLVSVFGNDVDAYYNKLLDGESGITMIDRFDASKFPTRFGGQIRGFSAEGYI 115
KRVVITGMGLVSVFGNDVDAYY KLL GESGI++IDRFDASKFPTRFGGQIRGFS+EGYI
Sbjct: 61 KRVVITGMGLVSVFGNDVDAYYEKLLSGESGISLIDRFDASKFPTRFGGQIRGFSSEGYI 120
Query: 116 DGKNDRRLDDCLRYCIVAGKKALEDADLGADISKKIDKERAGVLVGTGMGGLTVFSDGVQ 175
DGKN+RRLDDCL+YCIVAGKKALE A+LG D IDK +AGVLVGTGMGGLTVFS+GVQ
Sbjct: 121 DGKNERRLDDCLKYCIVAGKKALESANLGGDKLNTIDKRKAGVLVGTGMGGLTVFSEGVQ 180
Query: 176 ALIEKGHRKITPFFIPYAITNMGSALLAIDLGFMGPNYSISTACATSNYCFYAAANHIRR 235
LIEKGHR+I+PFFIPYAITNMGSALLAIDLG MGPNYSISTACATSNYCFYAAANHIRR
Sbjct: 181 NLIEKGHRRISPFFIPYAITNMGSALLAIDLGLMGPNYSISTACATSNYCFYAAANHIRR 240
Query: 236 GEADLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWDKDRDGFVMGEGAGVLV 295
GEAD+M+AGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWDK RDGFVMGEGAGVLV
Sbjct: 241 GEADMMIAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWDKARDGFVMGEGAGVLV 300
Query: 296 MESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAGVSPEEVNY 355
MESLEHAMKRGAPI+AEYLGGAVNCDA+HMTDPRADGLGVSSCIE LEDAGVSPEEVNY
Sbjct: 301 MESLEHAMKRGAPIVAEYLGGAVNCDAHHMTDPRADGLGVSSCIERCLEDAGVSPEEVNY 360
Query: 356 INAHATSTLAGDLAEINAIKKVFKNTTGIKINATKSMIGHCLGAAGGLEAIATVKAITTG 415
INAHATSTLAGDLAEINAIKKVFK+T+GIKINATKSMIGHCLGAAGGLEAIATVKAI TG
Sbjct: 361 INAHATSTLAGDLAEINAIKKVFKSTSGIKINATKSMIGHCLGAAGGLEAIATVKAINTG 420
Query: 416 WLHPSINQFNPEPSVEFDTVANKKQQHEVNVAISNSFGFGGHNSVVAFSAFKP 468
WLHPSINQFNPE +V+FDTV N+K+QHEV+VAISNSFGFGGHNSVVAFSAFKP
Sbjct: 421 WLHPSINQFNPEQAVDFDTVPNEKKQHEVDVAISNSFGFGGHNSVVAFSAFKP 473
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Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Specific for elongation from C-10 to unsaturated C-16 and C-18 fatty acids. Arabidopsis thaliana (taxid: 3702) EC: 2EC: .EC: 3EC: .EC: 1EC: .EC: 4EC: 1 |
| >sp|P23902|KASC1_HORVU 3-oxoacyl-[acyl-carrier-protein] synthase I, chloroplastic OS=Hordeum vulgare GN=KAS12 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 754 bits (1946), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 359/423 (84%), Positives = 392/423 (92%), Gaps = 2/423 (0%)
Query: 48 PKREKDPKKRVVITGMGLVSVFGNDVDAYYNKLLDGESGITMIDRFDASKFPTRFGGQIR 107
P+RE DP+KRVVITGMGL SVFG+DVD +Y++LL GESG+ IDRFDAS FPTRF GQIR
Sbjct: 40 PQRETDPRKRVVITGMGLASVFGSDVDTFYDRLLAGESGVGPIDRFDASSFPTRFAGQIR 99
Query: 108 GFSAEGYIDGKNDRRLDDCLRYCIVAGKKALEDADLGA--DISKKIDKERAGVLVGTGMG 165
GFS+EGYIDGKNDRRLDDC+RYCI++GKKALE A LGA D K+D RAGVLVGTGMG
Sbjct: 100 GFSSEGYIDGKNDRRLDDCIRYCILSGKKALESAGLGAGSDAHVKLDVGRAGVLVGTGMG 159
Query: 166 GLTVFSDGVQALIEKGHRKITPFFIPYAITNMGSALLAIDLGFMGPNYSISTACATSNYC 225
GL+VFSDGVQ LIEKG+RKI+PFFIPYAITNMGSALLAID+GFMGPNYSISTACATSNYC
Sbjct: 160 GLSVFSDGVQNLIEKGYRKISPFFIPYAITNMGSALLAIDVGFMGPNYSISTACATSNYC 219
Query: 226 FYAAANHIRRGEADLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWDKDRDGF 285
FYAAANHIRRGEAD+++AGGTEAAIIPIGLGGFVACRALSQRNDDP TA RPWDK+RDGF
Sbjct: 220 FYAAANHIRRGEADIIVAGGTEAAIIPIGLGGFVACRALSQRNDDPITACRPWDKERDGF 279
Query: 286 VMGEGAGVLVMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLED 345
VMGEGAGVLVMESLEHAMKR APIIAEYLGGAVNCDAYHMTDPRADGLGVSSCI SL D
Sbjct: 280 VMGEGAGVLVMESLEHAMKRDAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCITMSLRD 339
Query: 346 AGVSPEEVNYINAHATSTLAGDLAEINAIKKVFKNTTGIKINATKSMIGHCLGAAGGLEA 405
AGV+PEEVNYINAHATSTLAGDLAE+ AIK+VFKN + IKIN+TKSMIGHCLGAAGGLEA
Sbjct: 340 AGVAPEEVNYINAHATSTLAGDLAEVRAIKQVFKNPSEIKINSTKSMIGHCLGAAGGLEA 399
Query: 406 IATVKAITTGWLHPSINQFNPEPSVEFDTVANKKQQHEVNVAISNSFGFGGHNSVVAFSA 465
IAT+K+ITTGW+HP+INQFNPEP V+FDTVAN+K+QHEVNV ISNSFGFGGHNSVV F+
Sbjct: 400 IATIKSITTGWVHPTINQFNPEPEVDFDTVANEKKQHEVNVGISNSFGFGGHNSVVVFAP 459
Query: 466 FKP 468
FKP
Sbjct: 460 FKP 462
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Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Specific for elongation from C-10 to unsaturated C-16 and C-18 fatty acids. Hordeum vulgare (taxid: 4513) EC: 2 EC: . EC: 3 EC: . EC: 1 EC: . EC: 4 EC: 1 |
| >sp|Q9C9P4|KASC2_ARATH 3-oxoacyl-[acyl-carrier-protein] synthase II, chloroplastic OS=Arabidopsis thaliana GN=KAS2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 496 bits (1278), Expect = e-139, Method: Compositional matrix adjust.
Identities = 255/483 (52%), Positives = 336/483 (69%), Gaps = 17/483 (3%)
Query: 1 MQSLQSSSLHASP---------LNPLRSKSNFNLPNNARPTARRVS----FITASSTKSA 47
+Q+L +S L P L+ L ++ +L N R R S K A
Sbjct: 60 IQALVTSCLDFGPCTHYNNNNALSSLFGSNSVSLNRNQRRLNRAASSGGAMAVMEMEKEA 119
Query: 48 PKREKDP--KKRVVITGMGLVSVFGNDVDAYYNKLLDGESGITMIDRFDASKFPTRFGGQ 105
+K P ++RVV+TGMG+ + G+D +Y LL G SGI+ I+ FD S+FPTR G+
Sbjct: 120 AVNKKPPTEQRRVVVTGMGVETSLGHDPHTFYENLLQGNSGISQIENFDCSEFPTRIAGE 179
Query: 106 IRGFSAEGYIDGKNDRRLDDCLRYCIVAGKKALEDADLGADISKKIDKERAGVLVGTGMG 165
I+ FS EG++ K +R+D + Y + AGKKAL D + ++ + DK + GVL+G+ MG
Sbjct: 180 IKSFSTEGWVAPKLSKRMDKFMLYLLTAGKKALADGGVTDEVMAEFDKTKCGVLIGSAMG 239
Query: 166 GLTVFSDGVQALIEKGHRKITPFFIPYAITNMGSALLAIDLGFMGPNYSISTACATSNYC 225
G+ VF D ++AL ++K+ PF +P+A TNMGSA+LA+DLG+MGPNYSISTACATSN+C
Sbjct: 240 GMKVFYDAIEAL-RISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFC 298
Query: 226 FYAAANHIRRGEADLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWDKDRDGF 285
+ANHI +GEAD+ML GG++A IIPIGLGGFVACRALSQRN+DP ASRPWD +RDGF
Sbjct: 299 ILNSANHIIKGEADVMLCGGSDAVIIPIGLGGFVACRALSQRNNDPTKASRPWDTNRDGF 358
Query: 286 VMGEGAGVLVMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLED 345
VMGEGAGVL++E LEHA KRGA I AE+LGG+ CDAYHMT+P DG GV CIE +L
Sbjct: 359 VMGEGAGVLLLEELEHAKKRGATIYAEFLGGSFTCDAYHMTEPHPDGAGVILCIERALAS 418
Query: 346 AGVSPEEVNYINAHATSTLAGDLAEINAIKKVFKNTTGIKINATKSMIGHCLGAAGGLEA 405
AG+S E++NYINAHATST AGD+ E A+ F +K+N+TKSMIGH LGAAG +EA
Sbjct: 419 AGISKEQINYINAHATSTHAGDIKEYQALAHCFGQNPELKVNSTKSMIGHLLGAAGAVEA 478
Query: 406 IATVKAITTGWLHPSINQFNPEPSVEFD-TVANKKQQHEVNVAISNSFGFGGHNSVVAFS 464
+ATV+AI TGW+HP+IN NP+ V+ V KK++ ++ A+SNSFGFGGHNS + F+
Sbjct: 479 VATVQAIRTGWVHPNINLENPDSGVDTKLLVGPKKERLDIKAALSNSFGFGGHNSSIIFA 538
Query: 465 AFK 467
+K
Sbjct: 539 PYK 541
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Essential protein that catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Specific for elongation from C-16 and C-16 to unsaturated C-18 fatty acids. Confers resistance to low temperatures by maintaining chloroplast membranes integrity. Involved in the regulation of fatty acids ratios during seed metabolism. Required for embryo development, especially at the transition from the globular to the heart stage. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 3 EC: . EC: 1 EC: . EC: 4 EC: 1 |
| >sp|Q9KQH9|FABF_VIBCH 3-oxoacyl-[acyl-carrier-protein] synthase 2 OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) GN=fabF PE=3 SV=3 | Back alignment and function description |
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Score = 386 bits (992), Expect = e-106, Method: Compositional matrix adjust.
Identities = 199/412 (48%), Positives = 278/412 (67%), Gaps = 6/412 (1%)
Query: 55 KKRVVITGMGLVSVFGNDVDAYYNKLLDGESGITMIDRFDASKFPTRFGGQIRGFSAEGY 114
K+RVV+TGMG++S GN V++ + LL G+SGI I+ FD + F TRF G ++GF E Y
Sbjct: 3 KRRVVVTGMGMLSPVGNTVESSWKALLAGQSGIVNIEHFDTTNFSTRFAGLVKGFDCEQY 62
Query: 115 IDGKNDRRLDDCLRYCIVAGKKALEDADLGADISKKIDKERAGVLVGTGMGGLTVFSDGV 174
+ K+ R++D ++Y I AG +ALED+ L +++++ + R GV +G+G+GGL + G
Sbjct: 63 MSKKDARKMDLFIQYGIAAGIQALEDSGL--EVNEE-NAARIGVAIGSGIGGLELIETGH 119
Query: 175 QALIEKGHRKITPFFIPYAITNMGSALLAIDLGFMGPNYSISTACATSNYCFYAAANHIR 234
QALIEKG RK++PFF+P I NM + L+I G GPN +ISTAC T + AA I
Sbjct: 120 QALIEKGPRKVSPFFVPSTIVNMIAGNLSIMRGLRGPNIAISTACTTGLHNIGHAARMIA 179
Query: 235 RGEADLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWDKDRDGFVMGEGAGVL 294
G+AD M+AGG E A P+G+ GF A +ALS RND+PQ ASRPWDKDRDGFV+G+GAG++
Sbjct: 180 YGDADAMVAGGAEKASTPLGMAGFGAAKALSTRNDEPQKASRPWDKDRDGFVLGDGAGIM 239
Query: 295 VMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAGVSPEEVN 354
V+E EHA RGA I AE +G ++ DAYHMT P DG G + +E+++ DAGV+ E++
Sbjct: 240 VLEEYEHAKARGAKIYAEVVGFGMSGDAYHMTSPSEDGSGGALAMEAAMRDAGVTGEQIG 299
Query: 355 YINAHATSTLAGDLAEINAIKKVF--KNTTGIKINATKSMIGHCLGAAGGLEAIATVKAI 412
Y+NAH TST AGD+AE+ IK+ T + +++TKSM GH LGAAG +EAI TV ++
Sbjct: 300 YVNAHGTSTPAGDVAEVKGIKRALGEAGTKQVLVSSTKSMTGHLLGAAGSVEAIITVMSL 359
Query: 413 TTGWLHPSINQFNPEPSVEFDTVANKKQQHE-VNVAISNSFGFGGHNSVVAF 463
+ P+IN NPE + D V + ++ E + A+ NSFGFGG N + F
Sbjct: 360 VDQMVPPTINLDNPEEGLGVDLVPHVARKVESMEYAMCNSFGFGGTNGSLIF 411
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Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Has a preference for short chain acid substrates and may function to supply the octanoic substrates for lipoic acid biosynthesis. Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) (taxid: 243277) EC: 2 EC: . EC: 3 EC: . EC: 1 EC: . EC: 1 EC: 7 EC: 9 |
| >sp|P73283|FABF_SYNY3 3-oxoacyl-[acyl-carrier-protein] synthase 2 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=fabF PE=1 SV=1 | Back alignment and function description |
|---|
Score = 383 bits (983), Expect = e-105, Method: Compositional matrix adjust.
Identities = 195/414 (47%), Positives = 268/414 (64%), Gaps = 4/414 (0%)
Query: 55 KKRVVITGMGLVSVFGNDVDAYYNKLLDGESGITMIDRFDASKFPTRFGGQIRGFSAEGY 114
KKRVV+TG+G ++ GN + Y+ L++G +GI I RFDAS RFGG+++ F A +
Sbjct: 6 KKRVVVTGLGAITPIGNTLQDYWQGLMEGRNGIGPITRFDASDQACRFGGEVKDFDATQF 65
Query: 115 IDGKNDRRLDDCLRYCIVAGKKALEDADLGADISKKIDKERAGVLVGTGMGGLTVFSDGV 174
+D K +R+D + + A ++A+ DA L + +++ + GVL+GTG+GGL V D
Sbjct: 66 LDRKEAKRMDRFCHFAVCASQQAINDAKL---VINELNADEIGVLIGTGIGGLKVLEDQQ 122
Query: 175 QALIEKGHRKITPFFIPYAITNMGSALLAIDLGFMGPNYSISTACATSNYCFYAAANHIR 234
L++KG + +PF IP I NM S L AI+LG GPN TACA + A ++
Sbjct: 123 TILLDKGPSRCSPFMIPMMIANMASGLTAINLGAKGPNNCTVTACAAGSNAIGDAFRLVQ 182
Query: 235 RGEADLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWDKDRDGFVMGEGAGVL 294
G A M+ GGTEAAI P+ GF + RALS RNDDP ASRP+DKDRDGFVMGEG+G+L
Sbjct: 183 NGYAKAMICGGTEAAITPLSYAGFASARALSFRNDDPLHASRPFDKDRDGFVMGEGSGIL 242
Query: 295 VMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAGVSPEEVN 354
++E LE A+ RGA I E +G A+ CDAYH+T P DG G + I +L+D+G+ PE V+
Sbjct: 243 ILEELESALARGAKIYGEMVGYAMTCDAYHITAPVPDGRGATRAIAWALKDSGLKPEMVS 302
Query: 355 YINAHATSTLAGDLAEINAIKKVFKN-TTGIKINATKSMIGHCLGAAGGLEAIATVKAIT 413
YINAH TST A D+ E AIK+ N I +++TKSM GH LG +GG+EA+ATV AI
Sbjct: 303 YINAHGTSTPANDVTETRAIKQALGNHAYNIAVSSTKSMTGHLLGGSGGIEAVATVMAIA 362
Query: 414 TGWLHPSINQFNPEPSVEFDTVANKKQQHEVNVAISNSFGFGGHNSVVAFSAFK 467
+ P+IN NP+P + D V + + V+VA+SNSFGFGGHN +AF ++
Sbjct: 363 EDKVPPTINLENPDPECDLDYVPGQSRALIVDVALSNSFGFGGHNVTLAFKKYQ 416
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Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Has a preference for short chain acid substrates. Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708) EC: 2 EC: . EC: 3 EC: . EC: 1 EC: . EC: 1 EC: 7 EC: 9 |
| >sp|P55338|FABF_VIBHA 3-oxoacyl-[acyl-carrier-protein] synthase 2 OS=Vibrio harveyi GN=fabF PE=3 SV=2 | Back alignment and function description |
|---|
Score = 375 bits (962), Expect = e-103, Method: Compositional matrix adjust.
Identities = 191/411 (46%), Positives = 276/411 (67%), Gaps = 5/411 (1%)
Query: 55 KKRVVITGMGLVSVFGNDVDAYYNKLLDGESGITMIDRFDASKFPTRFGGQIRGFSAEGY 114
K+RVV+TGMG++S GN V++ + LL+G+SGI I+ FDA+ F TRF G ++ F Y
Sbjct: 3 KRRVVVTGMGMLSPVGNTVESSWKALLEGQSGIVNIEHFDATNFSTRFAGLVKDFDCTEY 62
Query: 115 IDGKNDRRLDDCLRYCIVAGKKALEDADLGADISKKIDKERAGVLVGTGMGGLTVFSDGV 174
+ K+ R++D ++Y I AG +AL+D+ G +I+++ + R GV +G+G+GGL + G
Sbjct: 63 MSKKDARKMDLFIQYGIAAGIQALDDS--GLEITEE-NAARVGVAIGSGIGGLDLIEAGH 119
Query: 175 QALIEKGHRKITPFFIPYAITNMGSALLAIDLGFMGPNYSISTACATSNYCFYAAANHIR 234
AL+EKG RK++PFF+P I NM + L+I G GPN +ISTAC T + AA I
Sbjct: 120 SALVEKGPRKVSPFFVPSTIVNMVAGNLSIMRGLRGPNIAISTACTTGLHNIGHAARMIA 179
Query: 235 RGEADLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWDKDRDGFVMGEGAGVL 294
G+A+ M+AGG E A P+G+ GF A +ALS RND+PQ ASRPWDK RDGFV+G+GAGV+
Sbjct: 180 YGDAEAMVAGGAEKASTPLGMAGFGAAKALSTRNDEPQKASRPWDKGRDGFVLGDGAGVM 239
Query: 295 VMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAGVSPEEVN 354
V+E EHA RGA I AE +G ++ DAYHMT P DG G + +E+++ DA ++ +V
Sbjct: 240 VLEEYEHAKARGAKIYAELVGFGMSGDAYHMTSPSEDGSGGALAMEAAMRDANITGTQVG 299
Query: 355 YINAHATSTLAGDLAEINAIKKVF--KNTTGIKINATKSMIGHCLGAAGGLEAIATVKAI 412
Y+NAH TST AGD+AEI +K+ + + + +++TKSM GH LGAAG +EAI TV ++
Sbjct: 300 YVNAHGTSTPAGDVAEIKGVKRALGEEGSKQVLVSSTKSMTGHLLGAAGSVEAIITVLSL 359
Query: 413 TTGWLHPSINQFNPEPSVEFDTVANKKQQHEVNVAISNSFGFGGHNSVVAF 463
+ P+IN +PE ++ D V + ++ ++ AI NSFGFGG N + F
Sbjct: 360 VDQIVPPTINLDDPEEGLDIDLVPHTARKVDMEYAICNSFGFGGTNGSLVF 410
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Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Has a preference for short chain acid substrates and may function to supply the octanoic substrates for lipoic acid biosynthesis. Vibrio harveyi (taxid: 669) EC: 2 EC: . EC: 3 EC: . EC: 1 EC: . EC: 1 EC: 7 EC: 9 |
| >sp|Q83E37|FABF_COXBU 3-oxoacyl-[acyl-carrier-protein] synthase 2 OS=Coxiella burnetii (strain RSA 493 / Nine Mile phase I) GN=fabF PE=1 SV=1 | Back alignment and function description |
|---|
Score = 372 bits (955), Expect = e-102, Method: Compositional matrix adjust.
Identities = 192/411 (46%), Positives = 264/411 (64%), Gaps = 4/411 (0%)
Query: 55 KKRVVITGMGLVSVFGNDVDAYYNKLLDGESGITMIDRFDASKFPTRFGGQIRGFSAEGY 114
K+RVVITG+G+VS GN V + LL G+SG+ I RFDAS FPT+ ++R F
Sbjct: 3 KRRVVITGLGVVSPLGNKVSDMWQALLAGKSGVKPITRFDASSFPTQIAAEVRDFDPALV 62
Query: 115 IDGKNDRRLDDCLRYCIVAGKKALEDADLGADISKKIDKERAGVLVGTGMGGLTVFSDGV 174
+D K+ R+ D +++ + + ++A ED+ L + + + R GV +G+G+GG+
Sbjct: 63 LDLKSIRKTDVFVQFAMESARQAWEDSGLEIN---ETNAPRVGVAIGSGIGGMPWIEKNY 119
Query: 175 QALIEKGHRKITPFFIPYAITNMGSALLAIDLGFMGPNYSISTACATSNYCFYAAANHIR 234
AL+ G RKI+PFFIP AI NM S +++I GPN SI TAC T + AA I
Sbjct: 120 DALLTSGPRKISPFFIPGAIINMASGMVSIKYDLKGPNISIVTACTTGLHNIGHAARMIA 179
Query: 235 RGEADLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWDKDRDGFVMGEGAGVL 294
+AD M+AGGTE A P+G+GGF A RALS RND+P+ ASRPWDK RDGFV+GEGA +
Sbjct: 180 HNDADAMIAGGTEMASTPLGIGGFAAVRALSTRNDEPEKASRPWDKGRDGFVLGEGAACV 239
Query: 295 VMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAGVSPEEVN 354
V+E LEHA KR A I AE +G ++ DAYHMT P + G ++C+++SL DAG++PE V+
Sbjct: 240 VVEELEHAKKRNATIYAEIIGFGMSGDAYHMTRPDPEAEGFTTCMKNSLRDAGIAPERVD 299
Query: 355 YINAHATSTLAGDLAEINAIKKVF-KNTTGIKINATKSMIGHCLGAAGGLEAIATVKAIT 413
YINAH TST A D E AIKK F + + +++TKSM GH LGAAG LE + +V AI
Sbjct: 300 YINAHGTSTPAADPLEARAIKKTFGDHAYKLAVSSTKSMTGHMLGAAGALETVISVLAIR 359
Query: 414 TGWLHPSINQFNPEPSVEFDTVANKKQQHEVNVAISNSFGFGGHNSVVAFS 464
P+IN NP+ + D V N+ ++ +++ +SNSFGFGG N + S
Sbjct: 360 DNTAPPTINLENPDEGCDLDFVPNEAREMKIDTVMSNSFGFGGTNGTLVLS 410
|
Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Has a preference for short chain acid substrates and may function to supply the octanoic substrates for lipoic acid biosynthesis. Coxiella burnetii (strain RSA 493 / Nine Mile phase I) (taxid: 227377) EC: 2 EC: . EC: 3 EC: . EC: 1 EC: . EC: 1 EC: 7 EC: 9 |
| >sp|O34340|FABF_BACSU 3-oxoacyl-[acyl-carrier-protein] synthase 2 OS=Bacillus subtilis (strain 168) GN=fabF PE=3 SV=1 | Back alignment and function description |
|---|
Score = 369 bits (946), Expect = e-101, Method: Compositional matrix adjust.
Identities = 188/414 (45%), Positives = 271/414 (65%), Gaps = 5/414 (1%)
Query: 55 KKRVVITGMGLVSVFGNDVDAYYNKLLDGESGITMIDRFDASKFPTRFGGQIRGFSAEGY 114
KKRVV+TG+G +S GNDVD +N ++G SGI I R DA ++P + +++ F+ E Y
Sbjct: 3 KKRVVVTGLGALSPLGNDVDTSWNNAINGVSGIGPITRVDAEEYPAKVAAELKDFNVEDY 62
Query: 115 IDGKNDRRLDDCLRYCIVAGKKALEDADLGADISKKIDKERAGVLVGTGMGGLTVFSDGV 174
+D K R++D +Y +VA K A+EDADL +I+ +I R GV VG+G+GGL
Sbjct: 63 MDKKEARKMDRFTQYAVVAAKMAVEDADL--NITDEI-APRVGVWVGSGIGGLETLESQF 119
Query: 175 QALIEKGHRKITPFFIPYAITNMGSALLAIDLGFMGPNYSISTACATSNYCFYAAANHIR 234
+ + KG R+++PFF+P I +M + ++I LG G N TACAT A I+
Sbjct: 120 EIFLTKGPRRVSPFFVPMMIPDMATGQISIALGAKGVNSCTVTACATGTNSIGDAFKVIQ 179
Query: 235 RGEADLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWDKDRDGFVMGEGAGVL 294
RG+AD+M+ GGTEA + + GF A +ALS N DP+TASRP+DK+RDGFVMGEGAG++
Sbjct: 180 RGDADVMVTGGTEAPLTRMSFAGFSANKALST-NPDPKTASRPFDKNRDGFVMGEGAGII 238
Query: 295 VMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAGVSPEEVN 354
V+E LEHA+ RGA I E +G DAYH+T P DG G + ++ +++DAG++PEE++
Sbjct: 239 VLEELEHALARGAKIYGEIVGYGSTGDAYHITAPAQDGEGGARAMQEAIKDAGIAPEEID 298
Query: 355 YINAHATSTLAGDLAEINAIKKVF-KNTTGIKINATKSMIGHCLGAAGGLEAIATVKAIT 413
YINAH TST D E AIK VF ++ + +++TKSM GH LGAAGG+EAI ++ AI
Sbjct: 299 YINAHGTSTYYNDKYETMAIKTVFGEHAHKLAVSSTKSMTGHLLGAAGGIEAIFSILAIK 358
Query: 414 TGWLHPSINQFNPEPSVEFDTVANKKQQHEVNVAISNSFGFGGHNSVVAFSAFK 467
G + P+IN P+ + D V ++ ++ E+N +SNS GFGGHN+ + F ++
Sbjct: 359 EGVIPPTINIQTPDEECDLDYVPDEARRQELNYVLSNSLGFGGHNATLIFKKYQ 412
|
Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Bacillus subtilis (strain 168) (taxid: 224308) EC: 2 EC: . EC: 3 EC: . EC: 1 EC: . EC: 1 EC: 7 EC: 9 |
| >sp|Q8NXE1|FABF_STAAW 3-oxoacyl-[acyl-carrier-protein] synthase 2 OS=Staphylococcus aureus (strain MW2) GN=fabF PE=1 SV=1 | Back alignment and function description |
|---|
Score = 362 bits (930), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 187/413 (45%), Positives = 266/413 (64%), Gaps = 5/413 (1%)
Query: 56 KRVVITGMGLVSVFGNDVDAYYNKLLDGESGITMIDRFDASKFPTRFGGQIRGFSAEGYI 115
KRVVITGMG +S GNDV + L G +GI I R D + G+++ F+ E +I
Sbjct: 5 KRVVITGMGALSPIGNDVKTTWENALKGVNGIDKITRIDTEPYSVHLAGELKNFNIEDHI 64
Query: 116 DGKNDRRLDDCLRYCIVAGKKALEDADLGADISKKIDKERAGVLVGTGMGGLTVFSDGVQ 175
D K RR+D +Y IVA ++A++DA L DI++ +R GV +G+G+GG+ F +
Sbjct: 65 DKKEARRMDRFTQYAIVAAREAVKDAQL--DINENT-ADRIGVWIGSGIGGMETFEIAHK 121
Query: 176 ALIEKGHRKITPFFIPYAITNMGSALLAIDLGFMGPNYSISTACATSNYCFYAAANHIRR 235
L++KG R+++PFF+P I +M + ++IDLG GPN + TACAT A ++R
Sbjct: 122 QLMDKGPRRVSPFFVPMLIPDMATGQVSIDLGAKGPNGATVTACATGTNSIGEAFKIVQR 181
Query: 236 GEADLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWDKDRDGFVMGEGAGVLV 295
G+AD M+ GGTEA I + + GF A RALS NDD +TA RP+ + RDGFVMGEGAG+LV
Sbjct: 182 GDADAMITGGTEAPITHMAIAGFSASRALST-NDDIETACRPFQEGRDGFVMGEGAGILV 240
Query: 296 MESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAGVSPEEVNY 355
+ESLE A RGA I AE +G DAYH+T P +G G S ++++++DAG+ P++V Y
Sbjct: 241 IESLESAQARGANIYAEIVGYGTTGDAYHITAPAPEGEGGSRAMQAAMDDAGIEPKDVQY 300
Query: 356 INAHATSTLAGDLAEINAIKKVF-KNTTGIKINATKSMIGHCLGAAGGLEAIATVKAITT 414
+NAH TST GDL E+ AIK F + +K+++TKSM GH LGA GG+EAI + +I
Sbjct: 301 LNAHGTSTPVGDLNEVKAIKNTFGEAAKHLKVSSTKSMTGHLLGATGGIEAIFSALSIKD 360
Query: 415 GWLHPSINQFNPEPSVEFDTVANKKQQHEVNVAISNSFGFGGHNSVVAFSAFK 467
+ P+I+ P+P + D V N+ Q ++ A+SNS GFGGHN+V+ F F+
Sbjct: 361 SKVAPTIHAVTPDPECDLDIVPNEAQDLDITYAMSNSLGFGGHNAVLVFKKFE 413
|
Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Staphylococcus aureus (strain MW2) (taxid: 196620) EC: 2 EC: . EC: 3 EC: . EC: 1 EC: . EC: 1 EC: 7 EC: 9 |
| >sp|Q6GAU2|FABF_STAAS 3-oxoacyl-[acyl-carrier-protein] synthase 2 OS=Staphylococcus aureus (strain MSSA476) GN=fabF PE=3 SV=1 | Back alignment and function description |
|---|
Score = 362 bits (930), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 187/413 (45%), Positives = 266/413 (64%), Gaps = 5/413 (1%)
Query: 56 KRVVITGMGLVSVFGNDVDAYYNKLLDGESGITMIDRFDASKFPTRFGGQIRGFSAEGYI 115
KRVVITGMG +S GNDV + L G +GI I R D + G+++ F+ E +I
Sbjct: 5 KRVVITGMGALSPIGNDVKTTWENALKGVNGIDKITRIDTEPYSVHLAGELKNFNIEDHI 64
Query: 116 DGKNDRRLDDCLRYCIVAGKKALEDADLGADISKKIDKERAGVLVGTGMGGLTVFSDGVQ 175
D K RR+D +Y IVA ++A++DA L DI++ +R GV +G+G+GG+ F +
Sbjct: 65 DKKEARRMDRFTQYAIVAAREAVKDAQL--DINENT-ADRIGVWIGSGIGGMETFEIAHK 121
Query: 176 ALIEKGHRKITPFFIPYAITNMGSALLAIDLGFMGPNYSISTACATSNYCFYAAANHIRR 235
L++KG R+++PFF+P I +M + ++IDLG GPN + TACAT A ++R
Sbjct: 122 QLMDKGPRRVSPFFVPMLIPDMATGQVSIDLGAKGPNGATVTACATGTNSIGEAFKIVQR 181
Query: 236 GEADLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWDKDRDGFVMGEGAGVLV 295
G+AD M+ GGTEA I + + GF A RALS NDD +TA RP+ + RDGFVMGEGAG+LV
Sbjct: 182 GDADAMITGGTEAPITHMAIAGFSASRALST-NDDIETACRPFQEGRDGFVMGEGAGILV 240
Query: 296 MESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAGVSPEEVNY 355
+ESLE A RGA I AE +G DAYH+T P +G G S ++++++DAG+ P++V Y
Sbjct: 241 IESLESAQARGANIYAEIVGYGTTGDAYHITAPAPEGEGGSRAMQAAMDDAGIEPKDVQY 300
Query: 356 INAHATSTLAGDLAEINAIKKVF-KNTTGIKINATKSMIGHCLGAAGGLEAIATVKAITT 414
+NAH TST GDL E+ AIK F + +K+++TKSM GH LGA GG+EAI + +I
Sbjct: 301 LNAHGTSTPVGDLNEVKAIKNTFGEAAKHLKVSSTKSMTGHLLGATGGIEAIFSALSIKD 360
Query: 415 GWLHPSINQFNPEPSVEFDTVANKKQQHEVNVAISNSFGFGGHNSVVAFSAFK 467
+ P+I+ P+P + D V N+ Q ++ A+SNS GFGGHN+V+ F F+
Sbjct: 361 SKVAPTIHAVTPDPECDLDIVPNEAQDLDITYAMSNSLGFGGHNAVLVFKKFE 413
|
Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Staphylococcus aureus (strain MSSA476) (taxid: 282459) EC: 2 EC: . EC: 3 EC: . EC: 1 EC: . EC: 1 EC: 7 EC: 9 |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 468 | ||||||
| TAIR|locus:2027252 | 541 | FAB1 "fatty acid biosynthesis | 0.967 | 0.837 | 0.527 | 6.8e-127 | |
| UNIPROTKB|Q9KQH9 | 414 | fabF "3-oxoacyl-[acyl-carrier- | 0.867 | 0.980 | 0.466 | 4.8e-94 | |
| TIGR_CMR|VC_2019 | 414 | VC_2019 "3-oxoacyl-(acyl-carri | 0.867 | 0.980 | 0.466 | 4.8e-94 | |
| TIGR_CMR|SO_2774 | 412 | SO_2774 "3-oxoacyl-(acyl-carri | 0.867 | 0.985 | 0.453 | 3.5e-91 | |
| TIGR_CMR|CBU_0497 | 414 | CBU_0497 "3-oxoacyl-acyl carri | 0.869 | 0.983 | 0.454 | 5.1e-90 | |
| UNIPROTKB|P0AAI5 | 413 | fabF "FabF" [Escherichia coli | 0.867 | 0.983 | 0.435 | 4.6e-89 | |
| TIGR_CMR|GSU_1605 | 410 | GSU_1605 "3-oxoacyl-(acyl-carr | 0.865 | 0.987 | 0.440 | 9.6e-89 | |
| TIGR_CMR|CHY_1445 | 412 | CHY_1445 "3-oxoacyl-(acyl-carr | 0.854 | 0.970 | 0.435 | 9.9e-87 | |
| TIGR_CMR|CPS_2299 | 412 | CPS_2299 "3-oxoacyl-[acyl-carr | 0.865 | 0.983 | 0.423 | 1.1e-85 | |
| TIGR_CMR|DET_0963 | 422 | DET_0963 "3-oxoacyl-[acyl-carr | 0.871 | 0.966 | 0.422 | 1.1e-85 |
| TAIR|locus:2027252 FAB1 "fatty acid biosynthesis 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1246 (443.7 bits), Expect = 6.8e-127, P = 6.8e-127
Identities = 243/461 (52%), Positives = 319/461 (69%)
Query: 14 LNPLRSKSNFNLPNNARPTARRVSFITASST----KSAPKREKDP--KKRVVITGMGLVS 67
L+ L ++ +L N R R S A + K A +K P ++RVV+TGMG+ +
Sbjct: 82 LSSLFGSNSVSLNRNQRRLNRAASSGGAMAVMEMEKEAAVNKKPPTEQRRVVVTGMGVET 141
Query: 68 VFGNDVDAYYNKLLDGESGITMIDRFDASKFPTRFGGQIRGFSAEGYIDGKNDRRLDDCL 127
G+D +Y LL G SGI+ I+ FD S+FPTR G+I+ FS EG++ K +R+D +
Sbjct: 142 SLGHDPHTFYENLLQGNSGISQIENFDCSEFPTRIAGEIKSFSTEGWVAPKLSKRMDKFM 201
Query: 128 RYCIVAGKKALEDADLGADISKKIDKERAXXXXXXXXXXXXXFSDGVQALIEKGHRKITP 187
Y + AGKKAL D + ++ + DK + F D ++AL ++K+ P
Sbjct: 202 LYLLTAGKKALADGGVTDEVMAEFDKTKCGVLIGSAMGGMKVFYDAIEAL-RISYKKMNP 260
Query: 188 FFIPYAITNMGSALLAIDLGFMGPNYSISTACATSNYCFYAAANHIRRGEADLMLAGGTE 247
F +P+A TNMGSA+LA+DLG+MGPNYSISTACATSN+C +ANHI +GEAD+ML GG++
Sbjct: 261 FCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNSANHIIKGEADVMLCGGSD 320
Query: 248 AAIIPIGLGGFVACRALSQRNDDPQTASRPWDKDRDGFVMGEGAGVLVMESLEHAMKRGA 307
A IIPIGLGGFVACRALSQRN+DP ASRPWD +RDGFVMGEGAGVL++E LEHA KRGA
Sbjct: 321 AVIIPIGLGGFVACRALSQRNNDPTKASRPWDTNRDGFVMGEGAGVLLLEELEHAKKRGA 380
Query: 308 PIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAGVSPEEVNYINAHATSTLAGD 367
I AE+LGG+ CDAYHMT+P DG GV CIE +L AG+S E++NYINAHATST AGD
Sbjct: 381 TIYAEFLGGSFTCDAYHMTEPHPDGAGVILCIERALASAGISKEQINYINAHATSTHAGD 440
Query: 368 LAEINAIKKVFKNTTGIKINATKSMIGHCLGAAGGLEAIATVKAITTGWLHPSINQFNPE 427
+ E A+ F +K+N+TKSMIGH LGAAG +EA+ATV+AI TGW+HP+IN NP+
Sbjct: 441 IKEYQALAHCFGQNPELKVNSTKSMIGHLLGAAGAVEAVATVQAIRTGWVHPNINLENPD 500
Query: 428 PSVEFDT-VANKKQQHEVNVAISNSFGFGGHNSVVAFSAFK 467
V+ V KK++ ++ A+SNSFGFGGHNS + F+ +K
Sbjct: 501 SGVDTKLLVGPKKERLDIKAALSNSFGFGGHNSSIIFAPYK 541
|
|
| UNIPROTKB|Q9KQH9 fabF "3-oxoacyl-[acyl-carrier-protein] synthase 2" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] | Back alignment and assigned GO terms |
|---|
Score = 936 (334.5 bits), Expect = 4.8e-94, P = 4.8e-94
Identities = 192/412 (46%), Positives = 267/412 (64%)
Query: 55 KKRVVITGMGLVSVFGNDVDAYYNKLLDGESGITMIDRFDASKFPTRFGGQIRGFSAEGY 114
K+RVV+TGMG++S GN V++ + LL G+SGI I+ FD + F TRF G ++GF E Y
Sbjct: 3 KRRVVVTGMGMLSPVGNTVESSWKALLAGQSGIVNIEHFDTTNFSTRFAGLVKGFDCEQY 62
Query: 115 IDGKNDRRLDDCLRYCIVAGKKALEDADLGADISKKIDKERAXXXXXXXXXXXXXFSDGV 174
+ K+ R++D ++Y I AG +ALED+ G +++++ + R G
Sbjct: 63 MSKKDARKMDLFIQYGIAAGIQALEDS--GLEVNEE-NAARIGVAIGSGIGGLELIETGH 119
Query: 175 QALIEKGHRKITPFFIPYAITNMGSALLAIDLGFMGPNYSISTACATSNYCFYAAANHIR 234
QALIEKG RK++PFF+P I NM + L+I G GPN +ISTAC T + AA I
Sbjct: 120 QALIEKGPRKVSPFFVPSTIVNMIAGNLSIMRGLRGPNIAISTACTTGLHNIGHAARMIA 179
Query: 235 RGEADLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWDKDRDGFVMGEGAGVL 294
G+AD M+AGG E A P+G+ GF A +ALS RND+PQ ASRPWDKDRDGFV+G+GAG++
Sbjct: 180 YGDADAMVAGGAEKASTPLGMAGFGAAKALSTRNDEPQKASRPWDKDRDGFVLGDGAGIM 239
Query: 295 VMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAGVSPEEVN 354
V+E EHA RGA I AE +G ++ DAYHMT P DG G + +E+++ DAGV+ E++
Sbjct: 240 VLEEYEHAKARGAKIYAEVVGFGMSGDAYHMTSPSEDGSGGALAMEAAMRDAGVTGEQIG 299
Query: 355 YINAHATSTLAGDLAEINAIKKVF--KNTTGIKINATKSMIGHCLGAAGGLEAIATVKAI 412
Y+NAH TST AGD+AE+ IK+ T + +++TKSM GH LGAAG +EAI TV ++
Sbjct: 300 YVNAHGTSTPAGDVAEVKGIKRALGEAGTKQVLVSSTKSMTGHLLGAAGSVEAIITVMSL 359
Query: 413 TTGWLHPSINQFNPEPSVEFDTVANKKQQHE-VNVAISNSFGFGGHNSVVAF 463
+ P+IN NPE + D V + ++ E + A+ NSFGFGG N + F
Sbjct: 360 VDQMVPPTINLDNPEEGLGVDLVPHVARKVESMEYAMCNSFGFGGTNGSLIF 411
|
|
| TIGR_CMR|VC_2019 VC_2019 "3-oxoacyl-(acyl-carrier-protein) synthase II" [Vibrio cholerae O1 biovar El Tor (taxid:686)] | Back alignment and assigned GO terms |
|---|
Score = 936 (334.5 bits), Expect = 4.8e-94, P = 4.8e-94
Identities = 192/412 (46%), Positives = 267/412 (64%)
Query: 55 KKRVVITGMGLVSVFGNDVDAYYNKLLDGESGITMIDRFDASKFPTRFGGQIRGFSAEGY 114
K+RVV+TGMG++S GN V++ + LL G+SGI I+ FD + F TRF G ++GF E Y
Sbjct: 3 KRRVVVTGMGMLSPVGNTVESSWKALLAGQSGIVNIEHFDTTNFSTRFAGLVKGFDCEQY 62
Query: 115 IDGKNDRRLDDCLRYCIVAGKKALEDADLGADISKKIDKERAXXXXXXXXXXXXXFSDGV 174
+ K+ R++D ++Y I AG +ALED+ G +++++ + R G
Sbjct: 63 MSKKDARKMDLFIQYGIAAGIQALEDS--GLEVNEE-NAARIGVAIGSGIGGLELIETGH 119
Query: 175 QALIEKGHRKITPFFIPYAITNMGSALLAIDLGFMGPNYSISTACATSNYCFYAAANHIR 234
QALIEKG RK++PFF+P I NM + L+I G GPN +ISTAC T + AA I
Sbjct: 120 QALIEKGPRKVSPFFVPSTIVNMIAGNLSIMRGLRGPNIAISTACTTGLHNIGHAARMIA 179
Query: 235 RGEADLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWDKDRDGFVMGEGAGVL 294
G+AD M+AGG E A P+G+ GF A +ALS RND+PQ ASRPWDKDRDGFV+G+GAG++
Sbjct: 180 YGDADAMVAGGAEKASTPLGMAGFGAAKALSTRNDEPQKASRPWDKDRDGFVLGDGAGIM 239
Query: 295 VMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAGVSPEEVN 354
V+E EHA RGA I AE +G ++ DAYHMT P DG G + +E+++ DAGV+ E++
Sbjct: 240 VLEEYEHAKARGAKIYAEVVGFGMSGDAYHMTSPSEDGSGGALAMEAAMRDAGVTGEQIG 299
Query: 355 YINAHATSTLAGDLAEINAIKKVF--KNTTGIKINATKSMIGHCLGAAGGLEAIATVKAI 412
Y+NAH TST AGD+AE+ IK+ T + +++TKSM GH LGAAG +EAI TV ++
Sbjct: 300 YVNAHGTSTPAGDVAEVKGIKRALGEAGTKQVLVSSTKSMTGHLLGAAGSVEAIITVMSL 359
Query: 413 TTGWLHPSINQFNPEPSVEFDTVANKKQQHE-VNVAISNSFGFGGHNSVVAF 463
+ P+IN NPE + D V + ++ E + A+ NSFGFGG N + F
Sbjct: 360 VDQMVPPTINLDNPEEGLGVDLVPHVARKVESMEYAMCNSFGFGGTNGSLIF 411
|
|
| TIGR_CMR|SO_2774 SO_2774 "3-oxoacyl-(acyl-carrier-protein) synthase II" [Shewanella oneidensis MR-1 (taxid:211586)] | Back alignment and assigned GO terms |
|---|
Score = 909 (325.0 bits), Expect = 3.5e-91, P = 3.5e-91
Identities = 186/410 (45%), Positives = 263/410 (64%)
Query: 55 KKRVVITGMGLVSVFGNDVDAYYNKLLDGESGITMIDRFDASKFPTRFGGQIRGFSAEGY 114
K+RVV+TG+GLV+ GN VD + LL G+SGI I +FDAS+F TRF G ++ F E Y
Sbjct: 3 KRRVVVTGLGLVTPVGNTVDTTWKALLSGKSGIAPITKFDASEFTTRFSGSVKDFDVEQY 62
Query: 115 IDGKNDRRLDDCLRYCIVAGKKALEDADLGADISKKIDKERAXXXXXXXXXXXXXFSDGV 174
+ K+ R++D ++Y + AG +A++D+ G D+SK ++ R
Sbjct: 63 LTKKDARKMDLFIQYGMAAGIQAIQDS--GLDMSK-VNPGRVGTAIGAGMGGMWLIEQNH 119
Query: 175 QALIEKGHRKITPFFIPYAITNMGSALLAIDLGFMGPNYSISTACATSNYCFYAAANHIR 234
AL+ G RKI+PFF+P I NM + L+I G GPN++++TAC T + AA I
Sbjct: 120 SALMNGGPRKISPFFVPSTIINMIAGHLSIMYGMTGPNFAVTTACTTGVHNIGFAARTIA 179
Query: 235 RGEADLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWDKDRDGFVMGEGAGVL 294
G+AD+M+AGG E P+G+GGF A +ALS RNDDP ASRPWDKDRDGFV+G+GAGV+
Sbjct: 180 YGDADVMVAGGAEDVTCPLGVGGFGAAKALSTRNDDPTAASRPWDKDRDGFVIGDGAGVM 239
Query: 295 VMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAGVSPEEVN 354
VME EHA RGA I E +G ++ DA+HMT P +DG G ++ + +++ DA + E++
Sbjct: 240 VMEEYEHAKARGATIYGELVGFGMSGDAFHMTSPPSDGAGAAAAMVNAVNDAKLPLEKIG 299
Query: 355 YINAHATSTLAGDLAEINAIKKVF-KNTTGIKINATKSMIGHCLGAAGGLEAIATVKAIT 413
YINAH TST AGD AE A+K VF + + +++TKSM GH LGAAG +EAI T+ A+
Sbjct: 300 YINAHGTSTPAGDKAEAAAVKSVFGDHAYNLLVSSTKSMTGHLLGAAGAVEAIFTLLALR 359
Query: 414 TGWLHPSINQFNPEPSVEFDTVANKKQQHEVNVAISNSFGFGGHNSVVAF 463
+ P+IN NP+ + D VA+ + +++ A+ NSFGFGG N + F
Sbjct: 360 DQAVPPTINLDNPDEGCDLDFVAHTARDVKLDYALCNSFGFGGTNGSLLF 409
|
|
| TIGR_CMR|CBU_0497 CBU_0497 "3-oxoacyl-acyl carrier protein synthase II" [Coxiella burnetii RSA 493 (taxid:227377)] | Back alignment and assigned GO terms |
|---|
Score = 898 (321.2 bits), Expect = 5.1e-90, P = 5.1e-90
Identities = 187/411 (45%), Positives = 256/411 (62%)
Query: 55 KKRVVITGMGLVSVFGNDVDAYYNKLLDGESGITMIDRFDASKFPTRFGGQIRGFSAEGY 114
K+RVVITG+G+VS GN V + LL G+SG+ I RFDAS FPT+ ++R F
Sbjct: 3 KRRVVITGLGVVSPLGNKVSDMWQALLAGKSGVKPITRFDASSFPTQIAAEVRDFDPALV 62
Query: 115 IDGKNDRRLDDCLRYCIVAGKKALEDADLGADISKKIDKERAXXXXXXXXXXXXXFSDGV 174
+D K+ R+ D +++ + + ++A ED+ G +I++ + R
Sbjct: 63 LDLKSIRKTDVFVQFAMESARQAWEDS--GLEINET-NAPRVGVAIGSGIGGMPWIEKNY 119
Query: 175 QALIEKGHRKITPFFIPYAITNMGSALLAIDLGFMGPNYSISTACATSNYCFYAAANHIR 234
AL+ G RKI+PFFIP AI NM S +++I GPN SI TAC T + AA I
Sbjct: 120 DALLTSGPRKISPFFIPGAIINMASGMVSIKYDLKGPNISIVTACTTGLHNIGHAARMIA 179
Query: 235 RGEADLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWDKDRDGFVMGEGAGVL 294
+AD M+AGGTE A P+G+GGF A RALS RND+P+ ASRPWDK RDGFV+GEGA +
Sbjct: 180 HNDADAMIAGGTEMASTPLGIGGFAAVRALSTRNDEPEKASRPWDKGRDGFVLGEGAACV 239
Query: 295 VMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAGVSPEEVN 354
V+E LEHA KR A I AE +G ++ DAYHMT P + G ++C+++SL DAG++PE V+
Sbjct: 240 VVEELEHAKKRNATIYAEIIGFGMSGDAYHMTRPDPEAEGFTTCMKNSLRDAGIAPERVD 299
Query: 355 YINAHATSTLAGDLAEINAIKKVF-KNTTGIKINATKSMIGHCLGAAGGLEAIATVKAIT 413
YINAH TST A D E AIKK F + + +++TKSM GH LGAAG LE + +V AI
Sbjct: 300 YINAHGTSTPAADPLEARAIKKTFGDHAYKLAVSSTKSMTGHMLGAAGALETVISVLAIR 359
Query: 414 TGWLHPSINQFNPEPSVEFDTVANKKQQHEVNVAISNSFGFGGHNSVVAFS 464
P+IN NP+ + D V N+ ++ +++ +SNSFGFGG N + S
Sbjct: 360 DNTAPPTINLENPDEGCDLDFVPNEAREMKIDTVMSNSFGFGGTNGTLVLS 410
|
|
| UNIPROTKB|P0AAI5 fabF "FabF" [Escherichia coli K-12 (taxid:83333)] | Back alignment and assigned GO terms |
|---|
Score = 889 (318.0 bits), Expect = 4.6e-89, P = 4.6e-89
Identities = 179/411 (43%), Positives = 262/411 (63%)
Query: 55 KKRVVITGMGLVSVFGNDVDAYYNKLLDGESGITMIDRFDASKFPTRFGGQIRGFSAEGY 114
K+RVV+TG+G++S GN V++ + LL G+SGI++ID FD S + T+F G ++ F+ E
Sbjct: 3 KRRVVVTGLGMLSPVGNTVESTWKALLAGQSGISLIDHFDTSAYATKFAGLVKDFNCEDI 62
Query: 115 IDGKNDRRLDDCLRYCIVAGKKALEDADLGADISKKIDKERAXXXXXXXXXXXXXFSDGV 174
I K R++D ++Y IVAG +A++D+ G +I+++ + R +
Sbjct: 63 ISRKEQRKMDAFIQYGIVAGVQAMQDS--GLEITEE-NATRIGAAIGSGIGGLGLIEENH 119
Query: 175 QALIEKGHRKITPFFIPYAITNMGSALLAIDLGFMGPNYSISTACATSNYCFYAAANHIR 234
+L+ G RKI+PFF+P I NM + L I G GP+ SI+TAC + + AA I
Sbjct: 120 TSLMNGGPRKISPFFVPSTIVNMVAGHLTIMYGLRGPSISIATACTSGVHNIGHAARIIA 179
Query: 235 RGEADLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWDKDRDGFVMGEGAGVL 294
G+AD+M+AGG E A P+G+GGF A RALS RND+PQ ASRPWDK+RDGFV+G+GAG+L
Sbjct: 180 YGDADVMVAGGAEKASTPLGVGGFGAARALSTRNDNPQAASRPWDKERDGFVLGDGAGML 239
Query: 295 VMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAGVSPEEVN 354
V+E EHA KRGA I AE +G ++ DAYHMT P +G G + + ++L DAG+ ++
Sbjct: 240 VLEEYEHAKKRGAKIYAELVGFGMSSDAYHMTSPPENGAGAALAMANALRDAGIEASQIG 299
Query: 355 YINAHATSTLAGDLAEINAIKKVFKNTTG-IKINATKSMIGHCLGAAGGLEAIATVKAIT 413
Y+NAH TST AGD AE A+K +F + +++TKSM GH LGAAG +E+I ++ A+
Sbjct: 300 YVNAHGTSTPAGDKAEAQAVKTIFGEAASRVLVSSTKSMTGHLLGAAGAVESIYSILALR 359
Query: 414 TGWLHPSINQFNPEPSVEFDTVANKKQQHE-VNVAISNSFGFGGHNSVVAF 463
+ P+IN NP+ + D V ++ +Q + + NSFGFGG N + F
Sbjct: 360 DQAVPPTINLDNPDEGCDLDFVPHEARQVSGMEYTLCNSFGFGGTNGSLIF 410
|
|
| TIGR_CMR|GSU_1605 GSU_1605 "3-oxoacyl-(acyl-carrier-protein) synthase II" [Geobacter sulfurreducens PCA (taxid:243231)] | Back alignment and assigned GO terms |
|---|
Score = 886 (316.9 bits), Expect = 9.6e-89, P = 9.6e-89
Identities = 180/409 (44%), Positives = 257/409 (62%)
Query: 56 KRVVITGMGLVSVFGNDVDAYYNKLLDGESGITMIDRFDASKFPTRFGGQIRGFSAEGYI 115
+RVV+TG+G VS G A ++ L+ G SGI I RFDAS P R G+++GF E YI
Sbjct: 2 RRVVVTGVGAVSPLGVGNAANWDALVSGTSGIGHITRFDASDLPVRIAGEVKGFDPEQYI 61
Query: 116 DGKNDRRLDDCLRYCIVAGKKALEDADLGADISKKIDKERAXXXXXXXXXXXXXFSDGVQ 175
D K +++D ++Y + A A+ED+ G I+++ + ER
Sbjct: 62 DKKEVKKMDLFIQYAMAAAHYAMEDS--GLQITEE-NAERTGVLVGAGLGGLPTIEKYHA 118
Query: 176 ALIEKGHRKITPFFIPYAITNMGSALLAIDLGFMGPNYSISTACATSNYCFYAAANHIRR 235
A++E GH+KI+PFFIP I N+ ++I G GPN S +ACAT + A + I+R
Sbjct: 119 AMLEGGHKKISPFFIPMLIINLAPGHISIKYGAKGPNLSSVSACATGTHSIGDAYHMIKR 178
Query: 236 GEADLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWDKDRDGFVMGEGAGVLV 295
G+AD M+AGGTE+ + P+G+GGF +ALS RNDDP ASRP++K+RDGFV+ EGAG++V
Sbjct: 179 GDADAMIAGGTESTVTPLGIGGFAVMKALSTRNDDPTAASRPFEKNRDGFVLAEGAGIVV 238
Query: 296 MESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAGVSPEEVNY 355
+E E A KRGA I AE +G + DAYH+T P +G G + C++ +L +AGV PEEV+Y
Sbjct: 239 LEEYEAAKKRGAKIYAEIVGYGLTGDAYHLTAPAPEGEGAARCMKMALNNAGVRPEEVDY 298
Query: 356 INAHATSTLAGDLAEINAIKKVFKN-TTGIKINATKSMIGHCLGAAGGLEAIATVKAITT 414
INAH TST D E A+K VF + + +++TKSM GH LGAAGG+EA+ T+ A+
Sbjct: 299 INAHGTSTPFNDYYETLAVKSVFGDYAKKVMVSSTKSMTGHLLGAAGGVEAVFTLMAMDK 358
Query: 415 GWLHPSINQFNPEPSVEFDTVANKKQQHEVNVAISNSFGFGGHNSVVAF 463
G + P+IN +P + D V N ++ + A+SN+FGFGG N+ + F
Sbjct: 359 GVIPPTINYQEQDPECDLDYVPNAAREKSITYALSNNFGFGGTNATLLF 407
|
|
| TIGR_CMR|CHY_1445 CHY_1445 "3-oxoacyl-(acyl-carrier-protein) synthase II" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] | Back alignment and assigned GO terms |
|---|
Score = 867 (310.3 bits), Expect = 9.9e-87, P = 9.9e-87
Identities = 176/404 (43%), Positives = 250/404 (61%)
Query: 56 KRVVITGMGLVSVFGNDVDAYYNKLLDGESGITMIDRFDASKFPTRFGGQIRGFSAEGYI 115
KRVV+TG+GL+S G + ++ L+ G SG+ + FD + F TR ++R F +I
Sbjct: 2 KRVVVTGLGLISPLGIGIKENWDNLMKGVSGVREVSSFDTTGFATRIAAEVRDFDPLKFI 61
Query: 116 DGKNDRRLDDCLRYCIVAGKKALEDADLGADISKKIDKERAXXXXXXXXXXXXXFSDGVQ 175
D K RR+D ++ + A K A+EDA G ++SK I+ ERA +
Sbjct: 62 DKKEARRMDRFTQFAVAATKLAIEDA--GLELSK-INPERAGIFIGSGIGGIKTLEEQAA 118
Query: 176 ALIEKGHRKITPFFIPYAITNMGSALLAIDLGFMGPNYSISTACATSNYCFYAAANHIRR 235
L EKG +++PFF+P I NM +AI G GPN +I +ACA+ A ++R
Sbjct: 119 ILREKGPDRVSPFFVPMMIANMAGGQIAITFGLTGPNETIVSACASGANAVGDAFRCLQR 178
Query: 236 GEADLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWDKDRDGFVMGEGAGVLV 295
GE D+ +AGG EAAI P+ GF + +A+S RND+P+ ASRP+DKDRDGFVMGEGAG+L+
Sbjct: 179 GEVDVAIAGGAEAAITPLSFAGFCSMKAMSTRNDEPEKASRPFDKDRDGFVMGEGAGILI 238
Query: 296 MESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAGVSPEEVNY 355
+E+LEHA+ RGA I E +G V DAYH+T P +G G + +E +L+DA ++PE+++Y
Sbjct: 239 LETLEHALARGARIYGEIVGYGVTSDAYHITAPDPEGKGAARAMELALKDARLNPEDIDY 298
Query: 356 INAHATSTLAGDLAEINAIKKVF-KNTTGIKINATKSMIGHCLGAAGGLEAIATVKAITT 414
INAH TST D E AIKKVF + + +++TKSM GH LGAAGG+E I ++ A+
Sbjct: 299 INAHGTSTPLNDKVETLAIKKVFGDHAYKLMVSSTKSMTGHLLGAAGGIETIYSILAVFF 358
Query: 415 GWLHPSINQFNPEPSVEFDTVANKKQQHEVNVAISNSFGFGGHN 458
+ P++N PE ++ D V N + V A+SNS GFGGHN
Sbjct: 359 NQVPPTLNCDEPEEGLDLDYVPNTGRDTVVKAALSNSLGFGGHN 402
|
|
| TIGR_CMR|CPS_2299 CPS_2299 "3-oxoacyl-[acyl-carrier-protein] synthase II" [Colwellia psychrerythraea 34H (taxid:167879)] | Back alignment and assigned GO terms |
|---|
Score = 857 (306.7 bits), Expect = 1.1e-85, P = 1.1e-85
Identities = 174/411 (42%), Positives = 257/411 (62%)
Query: 56 KRVVITGMGLVSVFGNDVDAYYNKLLDGESGITMIDRFDASKFPTRFGGQIRGFSAEGYI 115
+RVV+TG+G++S N + + LL G+SGI ID FD + +PT+F G ++ F A+ Y+
Sbjct: 2 RRVVVTGIGMLSPLANTAEETWQNLLLGKSGIGNIDHFDTTDYPTKFAGLVKDFDAQNYM 61
Query: 116 DGKNDRRLDDCLRYCIVAGKKALEDADLGADISKKIDKERAXXXXXXXXXXXXXFSDGVQ 175
+ K +++D ++Y I AG +A +D+ G +++++ + R
Sbjct: 62 ERKEAKKMDLFIQYGIAAGVQAFKDS--GLEVTEQ-NAPRIGVAIGSGIGGLGLIEQNHN 118
Query: 176 ALIE-KGH-RKITPFFIPYAITNMGSALLAIDLGFMGPNYSISTACATSNYCFYAAANHI 233
LI+ +G+ RK++PFF+P I NM + L+I G GPN +I+TAC + + AA I
Sbjct: 119 KLIKAEGNPRKLSPFFVPSTIINMIAGHLSIMFGLQGPNIAITTACTSGVHNIGHAARMI 178
Query: 234 RRGEADLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWDKDRDGFVMGEGAGV 293
G+AD ++AGG E A +G+GGF A RALS+RNDDP+ ASRPWDKDRDGFV+G+GAGV
Sbjct: 179 AYGDADAVVAGGAEKASTTLGMGGFGAARALSRRNDDPEAASRPWDKDRDGFVLGDGAGV 238
Query: 294 LVMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAGVSPEEV 353
+V+E EHA RGA I AE +G ++ DAYHMT P +G G + +++++ DA V +
Sbjct: 239 IVVEEYEHAKARGAKIYAELVGFGMSGDAYHMTSPPENGDGAARAMQNAINDAKVDISRI 298
Query: 354 NYINAHATSTLAGDLAEINAIKKVF-KNTTGIKINATKSMIGHCLGAAGGLEAIATVKAI 412
YINAH TST AGD+AE NA+K VF + + +TKSM GH LGAAG +EAI +++A+
Sbjct: 299 GYINAHGTSTQAGDMAETNAVKTVFGAGAKNVMMGSTKSMTGHLLGAAGAIEAIFSIQAL 358
Query: 413 TTGWLHPSINQFNPEPSVEFDTVANKKQQHEVNVAISNSFGFGGHNSVVAF 463
+ P+IN NP+ + D +A + E+ + NSFGFGG N + F
Sbjct: 359 VNKQVPPTINLDNPDEGCDLDYIAGAARDVELEYVLCNSFGFGGTNGSLIF 409
|
|
| TIGR_CMR|DET_0963 DET_0963 "3-oxoacyl-[acyl-carrier-protein] synthase II" [Dehalococcoides ethenogenes 195 (taxid:243164)] | Back alignment and assigned GO terms |
|---|
Score = 857 (306.7 bits), Expect = 1.1e-85, P = 1.1e-85
Identities = 174/412 (42%), Positives = 250/412 (60%)
Query: 51 EKDPKKRVVITGMGLVSVFGNDVDAYYNKLLDGESGITMIDRFDASKFPTRFGGQIRGFS 110
+ P+ RVVITG+G+VS G D + L++G SGI I FDAS RFGG+++ F
Sbjct: 3 DNQPQNRVVITGIGIVSPLGLDTQTTWEGLINGRSGIDHISLFDASNLAVRFGGEVKDFD 62
Query: 111 AEGYIDGKNDRRLDDCLRYCIVAGKKALEDADLGADISKKIDKERAXXXXXXXXXXXXXF 170
YI K+ RR+D + + AGK+ALE++ LGAD S + D
Sbjct: 63 PANYISRKDIRRMDRFAQLAVAAGKQALENSGLGADESVRQD---IGVIVGSGIGGLSVL 119
Query: 171 SDGVQALIEKGHRKITPFFIPYAITNMGSALLAIDLGFMGPNYSISTACATSNYCFYAAA 230
+ ++ +E+G +++PF +P I +M A ++I LG GPN+ ++AC++ + A
Sbjct: 120 FEQIKVFLEQGPDRVSPFLVPMMIADMAGAQVSIQLGLKGPNFCTTSACSSGSDAIGTAF 179
Query: 231 NHIRRGEADLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWDKDRDGFVMGEG 290
IR G A ++LAGG E+ + P+G GF A +ALS RN+DPQTASRP+D +RDGFV+ EG
Sbjct: 180 EKIRFGSAKIILAGGAESIMNPVGFAGFSALKALSTRNEDPQTASRPFDANRDGFVIAEG 239
Query: 291 AGVLVMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAGVSP 350
A +LV+E +E A RGA IIAE +G + DA+H+T P G+ + I +L AG+ P
Sbjct: 240 AAILVLEEMESAKARGANIIAEIIGYGGSSDAFHITQPVESGVEAARAINIALNTAGIKP 299
Query: 351 EEVNYINAHATSTLAGDLAEINAIKKVF-KNTTGIKINATKSMIGHCLGAAGGLEAIATV 409
E V+YINAH TST D E NAIK F ++ + I++TKSM+GH +G AG +EA
Sbjct: 300 EAVDYINAHGTSTPLNDKMETNAIKVAFGEHARKLAISSTKSMLGHLIGGAGAIEASICA 359
Query: 410 KAITTGWLHPSINQFNPEPSVEFDTVANKKQQHEVNVAISNSFGFGGHNSVV 461
I G + P+IN P+P + D N ++ +V VA++NSFGFGGHNSV+
Sbjct: 360 LTIKNGIIPPTINYTTPDPDCDLDYTPNTARRAKVRVALNNSFGFGGHNSVL 411
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q83E37 | FABF_COXBU | 2, ., 3, ., 1, ., 1, 7, 9 | 0.4671 | 0.8696 | 0.9830 | yes | no |
| P0AAI8 | FABF_SHIFL | 2, ., 3, ., 1, ., 1, 7, 9 | 0.4501 | 0.8675 | 0.9830 | yes | no |
| Q9NWU1 | OXSM_HUMAN | 2, ., 3, ., 1, ., 4, 1 | 0.3871 | 0.8717 | 0.8888 | yes | no |
| Q8NXE1 | FABF_STAAW | 2, ., 3, ., 1, ., 1, 7, 9 | 0.4527 | 0.8717 | 0.9855 | yes | no |
| P0AAI6 | FABF_ECOL6 | 2, ., 3, ., 1, ., 1, 7, 9 | 0.4501 | 0.8675 | 0.9830 | yes | no |
| P57193 | FABB_BUCAI | 2, ., 3, ., 1, ., 4, 1 | 0.3700 | 0.8376 | 0.9655 | yes | no |
| O94297 | OXSM_SCHPO | 2, ., 3, ., 1, ., 4, 1 | 0.3835 | 0.8739 | 0.9600 | yes | no |
| P43710 | FABB_HAEIN | 2, ., 3, ., 1, ., 4, 1 | 0.3605 | 0.8504 | 0.9802 | yes | no |
| O34340 | FABF_BACSU | 2, ., 3, ., 1, ., 1, 7, 9 | 0.4541 | 0.8739 | 0.9903 | yes | no |
| P52410 | KASC1_ARATH | 2, ., 3, ., 1, ., 4, 1 | 0.8752 | 1.0 | 0.9894 | yes | no |
| Q9KQH9 | FABF_VIBCH | 2, ., 3, ., 1, ., 1, 7, 9 | 0.4830 | 0.8675 | 0.9806 | yes | no |
| Q5TKS0 | FABF_STAAU | 2, ., 3, ., 1, ., 1, 7, 9 | 0.4507 | 0.8568 | 0.9950 | yes | no |
| Q9CBS7 | FAB1_MYCLE | 2, ., 3, ., 1, ., 4, 1 | 0.3476 | 0.8269 | 0.9302 | yes | no |
| Q99VA6 | FABF_STAAM | 2, ., 3, ., 1, ., 1, 7, 9 | 0.4527 | 0.8717 | 0.9855 | yes | no |
| Q5HHA1 | FABF_STAAC | 2, ., 3, ., 1, ., 1, 7, 9 | 0.4527 | 0.8717 | 0.9855 | yes | no |
| P55338 | FABF_VIBHA | 2, ., 3, ., 1, ., 1, 7, 9 | 0.4647 | 0.8675 | 0.9783 | yes | no |
| P63455 | FAB1_MYCBO | 2, ., 3, ., 1, ., 4, 1 | 0.3450 | 0.8269 | 0.9302 | yes | no |
| P39525 | CEM1_YEAST | 2, ., 3, ., 1, ., 4, 1 | 0.3251 | 0.8632 | 0.9140 | yes | no |
| Q0VCA7 | OXSM_BOVIN | 2, ., 3, ., 1, ., 4, 1 | 0.3857 | 0.8696 | 0.8847 | yes | no |
| Q7A6F8 | FABF_STAAN | 2, ., 3, ., 1, ., 1, 7, 9 | 0.4527 | 0.8717 | 0.9855 | yes | no |
| P63454 | FAB1_MYCTU | 2, ., 3, ., 1, ., 4, 1 | 0.3450 | 0.8269 | 0.9302 | yes | no |
| Q6GIA3 | FABF_STAAR | 2, ., 3, ., 1, ., 1, 7, 9 | 0.4514 | 0.8696 | 0.9830 | yes | no |
| P56902 | FABF_RHIME | 2, ., 3, ., 1, ., 1, 7, 9 | 0.4071 | 0.8717 | 0.9691 | yes | no |
| Q9D404 | OXSM_MOUSE | 2, ., 3, ., 1, ., 4, 1 | 0.3904 | 0.8696 | 0.8867 | yes | no |
| Q6GAU2 | FABF_STAAS | 2, ., 3, ., 1, ., 1, 7, 9 | 0.4527 | 0.8717 | 0.9855 | yes | no |
| P23902 | KASC1_HORVU | 2, ., 3, ., 1, ., 4, 1 | 0.8486 | 0.8995 | 0.9112 | N/A | no |
| Q89AY4 | FABB_BUCBP | 2, ., 3, ., 1, ., 4, 1 | 0.3526 | 0.8589 | 0.9877 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 2.3.1 | 0.998 |
| 3rd Layer | 2.3.1.41 | 0.994 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 468 | |||
| PLN02787 | 540 | PLN02787, PLN02787, 3-oxoacyl-[acyl-carrier-protei | 0.0 | |
| cd00834 | 406 | cd00834, KAS_I_II, Beta-ketoacyl-acyl carrier prot | 0.0 | |
| TIGR03150 | 407 | TIGR03150, fabF, beta-ketoacyl-acyl-carrier-protei | 0.0 | |
| PRK06333 | 424 | PRK06333, PRK06333, 3-oxoacyl-(acyl carrier protei | 0.0 | |
| PRK07314 | 411 | PRK07314, PRK07314, 3-oxoacyl-(acyl carrier protei | 0.0 | |
| COG0304 | 412 | COG0304, FabB, 3-oxoacyl-(acyl-carrier-protein) sy | 1e-168 | |
| PTZ00050 | 421 | PTZ00050, PTZ00050, 3-oxoacyl-acyl carrier protein | 1e-137 | |
| PRK08722 | 414 | PRK08722, PRK08722, 3-oxoacyl-(acyl carrier protei | 1e-130 | |
| PRK08439 | 406 | PRK08439, PRK08439, 3-oxoacyl-(acyl carrier protei | 1e-127 | |
| PLN02836 | 437 | PLN02836, PLN02836, 3-oxoacyl-[acyl-carrier-protei | 1e-112 | |
| PRK07910 | 418 | PRK07910, PRK07910, 3-oxoacyl-(acyl carrier protei | 1e-91 | |
| PRK07967 | 406 | PRK07967, PRK07967, 3-oxoacyl-(acyl carrier protei | 3e-85 | |
| PRK09116 | 405 | PRK09116, PRK09116, 3-oxoacyl-(acyl carrier protei | 5e-82 | |
| PRK14691 | 342 | PRK14691, PRK14691, 3-oxoacyl-(acyl carrier protei | 2e-79 | |
| PRK06501 | 425 | PRK06501, PRK06501, 3-oxoacyl-(acyl carrier protei | 9e-79 | |
| cd00828 | 407 | cd00828, elong_cond_enzymes, "elongating" condensi | 5e-78 | |
| PRK07103 | 410 | PRK07103, PRK07103, polyketide beta-ketoacyl:acyl | 7e-72 | |
| pfam00109 | 243 | pfam00109, ketoacyl-synt, Beta-ketoacyl synthase, | 1e-65 | |
| PRK05952 | 381 | PRK05952, PRK05952, 3-oxoacyl-(acyl carrier protei | 9e-62 | |
| cd00833 | 421 | cd00833, PKS, polyketide synthases (PKSs) polymeri | 3e-60 | |
| cd00832 | 399 | cd00832, CLF, Chain-length factor (CLF) is a facto | 8e-54 | |
| cd00825 | 332 | cd00825, decarbox_cond_enzymes, decarboxylating co | 4e-49 | |
| PRK09185 | 392 | PRK09185, PRK09185, 3-oxoacyl-(acyl carrier protei | 2e-47 | |
| COG3321 | 1061 | COG3321, COG3321, Polyketide synthase modules and | 2e-41 | |
| pfam02801 | 119 | pfam02801, Ketoacyl-synt_C, Beta-ketoacyl synthase | 3e-38 | |
| cd00327 | 254 | cd00327, cond_enzymes, Condensing enzymes; Family | 6e-25 | |
| TIGR02813 | 2582 | TIGR02813, omega_3_PfaA, polyketide-type polyunsat | 1e-22 | |
| smart00825 | 298 | smart00825, PKS_KS, Beta-ketoacyl synthase | 1e-17 | |
| PRK06519 | 398 | PRK06519, PRK06519, 3-oxoacyl-(acyl carrier protei | 1e-05 | |
| smart00825 | 298 | smart00825, PKS_KS, Beta-ketoacyl synthase | 2e-04 | |
| PRK08963 | 428 | PRK08963, fadI, 3-ketoacyl-CoA thiolase; Reviewed | 0.003 | |
| cd00829 | 375 | cd00829, SCP-x_thiolase, Thiolase domain associate | 0.003 | |
| PLN02287 | 452 | PLN02287, PLN02287, 3-ketoacyl-CoA thiolase | 0.003 | |
| COG0183 | 392 | COG0183, PaaJ, Acetyl-CoA acetyltransferase [Lipid | 0.004 |
| >gnl|CDD|215421 PLN02787, PLN02787, 3-oxoacyl-[acyl-carrier-protein] synthase II | Back alignment and domain information |
|---|
Score = 596 bits (1539), Expect = 0.0
Identities = 265/471 (56%), Positives = 343/471 (72%), Gaps = 9/471 (1%)
Query: 5 QSSSLHASPLNPLRSKSNFNLPNNARPTARRVSFITASSTKSAPKREKDPKK-------R 57
+S + L+ L ++ +L N R R A + P++E + KK R
Sbjct: 71 HYNSSGGNALSSLFGSNSVSLNRNQRRRNRAARSGKAMAVAVQPEKEVETKKKPLTKQRR 130
Query: 58 VVITGMGLVSVFGNDVDAYYNKLLDGESGITMIDRFDASKFPTRFGGQIRGFSAEGYIDG 117
VV+TGMG+VS G+D D +YN LL+G SGI+ I+RFD S+FPTR G+I+ FS +G++
Sbjct: 131 VVVTGMGVVSPLGHDPDVFYNNLLEGVSGISEIERFDCSQFPTRIAGEIKSFSTDGWVAP 190
Query: 118 KNDRRLDDCLRYCIVAGKKALEDADLGADISKKIDKERAGVLVGTGMGGLTVFSDGVQAL 177
K +R+D + Y + AGKKAL D + D+ K++DK + GVL+G+ MGG+ VF+D ++AL
Sbjct: 191 KLSKRMDKFMLYLLTAGKKALADGGITEDVMKELDKTKCGVLIGSAMGGMKVFNDAIEAL 250
Query: 178 IEKGHRKITPFFIPYAITNMGSALLAIDLGFMGPNYSISTACATSNYCFYAAANHIRRGE 237
+RK+ PF +P+A TNMGSA+LA+DLG+MGPNYSISTACATSN+C AANHI RGE
Sbjct: 251 -RISYRKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHIIRGE 309
Query: 238 ADLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWDKDRDGFVMGEGAGVLVME 297
AD+ML GG++AAIIPIGLGGFVACRALSQRNDDP ASRPWD +RDGFVMGEGAGVL++E
Sbjct: 310 ADVMLCGGSDAAIIPIGLGGFVACRALSQRNDDPTKASRPWDMNRDGFVMGEGAGVLLLE 369
Query: 298 SLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAGVSPEEVNYIN 357
LEHA KRGA I AE+LGG+ CDAYHMT+P +G GV CIE +L +GVS E+VNYIN
Sbjct: 370 ELEHAKKRGANIYAEFLGGSFTCDAYHMTEPHPEGAGVILCIEKALAQSGVSKEDVNYIN 429
Query: 358 AHATSTLAGDLAEINAIKKVFKNTTGIKINATKSMIGHCLGAAGGLEAIATVKAITTGWL 417
AHATST AGDL E A+ + F +++N+TKSMIGH LGAAG +EAIATV+AI TGW+
Sbjct: 430 AHATSTKAGDLKEYQALMRCFGQNPELRVNSTKSMIGHLLGAAGAVEAIATVQAIRTGWV 489
Query: 418 HPSINQFNPEPSVEFDT-VANKKQQHEVNVAISNSFGFGGHNSVVAFSAFK 467
HP+IN NPE V+ V KK++ ++ VA+SNSFGFGGHNS + F+ +K
Sbjct: 490 HPNINLENPESGVDTKVLVGPKKERLDIKVALSNSFGFGGHNSSILFAPYK 540
|
Length = 540 |
| >gnl|CDD|238430 cd00834, KAS_I_II, Beta-ketoacyl-acyl carrier protein (ACP) synthase (KAS), type I and II | Back alignment and domain information |
|---|
Score = 579 bits (1495), Expect = 0.0
Identities = 209/409 (51%), Positives = 281/409 (68%), Gaps = 4/409 (0%)
Query: 56 KRVVITGMGLVSVFGNDVDAYYNKLLDGESGITMIDRFDASKFPTRFGGQIRGFSAEGYI 115
+RVVITG+G V+ GN V+ ++ LL G SGI I RFDAS FP+R G++ F E Y+
Sbjct: 1 RRVVITGLGAVTPLGNGVEEFWEALLAGRSGIRPITRFDASGFPSRIAGEVPDFDPEDYL 60
Query: 116 DGKNDRRLDDCLRYCIVAGKKALEDADLGADISKKIDKERAGVLVGTGMGGLTVFSDGVQ 175
D K RR+D ++ + A ++AL DA L + +D ER GV++G+G+GGL + +
Sbjct: 61 DRKELRRMDRFAQFALAAAEEALADAGLDPEE---LDPERIGVVIGSGIGGLATIEEAYR 117
Query: 176 ALIEKGHRKITPFFIPYAITNMGSALLAIDLGFMGPNYSISTACATSNYCFYAAANHIRR 235
AL+EKG R+++PFF+P A+ NM + +AI LG GPNY++STACA+ + AA IR
Sbjct: 118 ALLEKGPRRVSPFFVPMALPNMAAGQVAIRLGLRGPNYTVSTACASGAHAIGDAARLIRL 177
Query: 236 GEADLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWDKDRDGFVMGEGAGVLV 295
G AD+++AGG EA I P+ L GF A RALS RNDDP+ ASRP+DKDRDGFV+GEGAGVLV
Sbjct: 178 GRADVVIAGGAEALITPLTLAGFAALRALSTRNDDPEKASRPFDKDRDGFVLGEGAGVLV 237
Query: 296 MESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAGVSPEEVNY 355
+ESLEHA RGA I AE LG + DAYH+T P DG G + + ++L DAG+SPE+++Y
Sbjct: 238 LESLEHAKARGAKIYAEILGYGASSDAYHITAPDPDGEGAARAMRAALADAGLSPEDIDY 297
Query: 356 INAHATSTLAGDLAEINAIKKVFKNTT-GIKINATKSMIGHCLGAAGGLEAIATVKAITT 414
INAH TST D AE AIK+VF + +++TKSM GH LGAAG +EAIAT+ A+
Sbjct: 298 INAHGTSTPLNDAAESKAIKRVFGEHAKKVPVSSTKSMTGHLLGAAGAVEAIATLLALRD 357
Query: 415 GWLHPSINQFNPEPSVEFDTVANKKQQHEVNVAISNSFGFGGHNSVVAF 463
G L P+IN P+P + D V N+ ++ + A+SNSFGFGGHN+ + F
Sbjct: 358 GVLPPTINLEEPDPECDLDYVPNEAREAPIRYALSNSFGFGGHNASLVF 406
|
KASs are responsible for the elongation steps in fatty acid biosynthesis. KASIII catalyses the initial condensation and KAS I and II catalyze further elongation steps by Claisen condensation of malonyl-acyl carrier protein (ACP) with acyl-ACP. Length = 406 |
| >gnl|CDD|200247 TIGR03150, fabF, beta-ketoacyl-acyl-carrier-protein synthase II | Back alignment and domain information |
|---|
Score = 569 bits (1470), Expect = 0.0
Identities = 204/409 (49%), Positives = 287/409 (70%), Gaps = 4/409 (0%)
Query: 56 KRVVITGMGLVSVFGNDVDAYYNKLLDGESGITMIDRFDASKFPTRFGGQIRGFSAEGYI 115
+RVV+TG+G V+ GN V+ ++ LL G+SGI I RFDAS P + G+++ F E YI
Sbjct: 1 RRVVVTGLGAVTPLGNGVEEFWENLLAGKSGIGPITRFDASDLPVKIAGEVKDFDPEDYI 60
Query: 116 DGKNDRRLDDCLRYCIVAGKKALEDADLGADISKKIDKERAGVLVGTGMGGLTVFSDGVQ 175
D K RR+D ++Y + A K+A+ED+ L + + D ER GV++G+G+GGL +
Sbjct: 61 DKKEARRMDRFIQYALAAAKEAVEDSGLDIE---EEDAERVGVIIGSGIGGLETIEEQHI 117
Query: 176 ALIEKGHRKITPFFIPYAITNMGSALLAIDLGFMGPNYSISTACATSNYCFYAAANHIRR 235
L+EKG R+++PFFIP +I NM + ++I G GPN+++ TACAT + A I+R
Sbjct: 118 VLLEKGPRRVSPFFIPMSIINMAAGQISIRYGAKGPNHAVVTACATGTHAIGDAFRLIQR 177
Query: 236 GEADLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWDKDRDGFVMGEGAGVLV 295
G+AD+M+AGG EAAI P+G+ GF A +ALS RNDDP+ ASRP+DKDRDGFVMGEGAGVLV
Sbjct: 178 GDADVMIAGGAEAAITPLGIAGFAAMKALSTRNDDPEKASRPFDKDRDGFVMGEGAGVLV 237
Query: 296 MESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAGVSPEEVNY 355
+E LEHA RGA I AE +G ++ DAYH+T P +G G + + ++L+DAG++PE+V+Y
Sbjct: 238 LEELEHAKARGAKIYAEIVGYGMSGDAYHITAPAPEGEGAARAMRAALKDAGINPEDVDY 297
Query: 356 INAHATSTLAGDLAEINAIKKVFKN-TTGIKINATKSMIGHCLGAAGGLEAIATVKAITT 414
INAH TST GD AE AIK+VF + + +++TKSM GH LGAAG +EAI TV A+
Sbjct: 298 INAHGTSTPLGDKAETKAIKRVFGDHAYKLAVSSTKSMTGHLLGAAGAIEAIFTVLALRD 357
Query: 415 GWLHPSINQFNPEPSVEFDTVANKKQQHEVNVAISNSFGFGGHNSVVAF 463
G + P+IN NP+P + D V N+ ++ +++ A+SNSFGFGGHN+ + F
Sbjct: 358 GIVPPTINLDNPDPECDLDYVPNEAREAKIDYALSNSFGFGGHNASLVF 406
|
3-oxoacyl-[acyl-carrier-protein] synthase 2 (KAS-II, FabF) is involved in the condensation step of fatty acid biosynthesis in which the malonyl donor group is decarboxylated and the resulting carbanion used to attack and extend the acyl group attached to the acyl carrier protein. Most genomes encoding fatty acid biosynthesis contain a number of condensing enzymes, often of all three types: 1, 2 and 3. Synthase 2 is mechanistically related to synthase 1 (KAS-I, FabB) containing a number of absolutely conserved catalytic residues in common. This model is based primarily on genes which are found in apparent operons with other essential genes of fatty acid biosynthesis (GenProp0681). The large gap between the trusted cutoff and the noise cutoff contains many genes which are not found adjacent to genes of the fatty acid pathway in genomes that often also contain a better hit to this model. These genes may be involved in other processes such as polyketide biosyntheses. Some genomes contain more than one above-trusted hit to this model which may result from recent paralogous expansions. Second hits to this model which are not next to other fatty acid biosynthesis genes may be involved in other processes. FabB sequences should fall well below the noise cutoff of this model [Fatty acid and phospholipid metabolism, Biosynthesis]. Length = 407 |
| >gnl|CDD|235781 PRK06333, PRK06333, 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed | Back alignment and domain information |
|---|
Score = 563 bits (1453), Expect = 0.0
Identities = 193/425 (45%), Positives = 271/425 (63%), Gaps = 12/425 (2%)
Query: 54 PKKRVVITGMGLVSVFGNDVDAYYNKLLDGESGITMIDRFDASKFPTRFGGQIR------ 107
KKR+V+TGMG VS G V+ ++ +LL G+SGI + F T+ GGQ+
Sbjct: 2 NKKRIVVTGMGAVSPLGCGVETFWQRLLAGQSGIRTLTDFPVGDLATKIGGQVPDLAEDA 61
Query: 108 --GFSAEGYIDGKNDRRLDDCLRYCIVAGKKALEDADLGADISKKIDKERAGVLVGTGMG 165
GF + Y+D K+ R++D + + + A K+AL A D + D+ER ++G+G+G
Sbjct: 62 EAGFDPDRYLDPKDQRKMDRFILFAMAAAKEALAQAGWDPDTLE--DRERTATIIGSGVG 119
Query: 166 GLTVFSDGVQALIEKGHRKITPFFIPYAITNMGSALLAIDLGFMGPNYSISTACATSNYC 225
G ++ V+ L +G R+++PF IP +TNM + ++I GF GP + TACA
Sbjct: 120 GFPAIAEAVRTLDSRGPRRLSPFTIPSFLTNMAAGHVSIRYGFKGPLGAPVTACAAGVQA 179
Query: 226 FYAAANHIRRGEADLMLAGGTEAAIIPIGLGGFVACRALSQR-NDDPQTASRPWDKDRDG 284
AA IR GEAD+ + GGTEAAI + L GF A RALS R ND P+ ASRP+D+DRDG
Sbjct: 180 IGDAARLIRSGEADVAVCGGTEAAIDRVSLAGFAAARALSTRFNDAPEQASRPFDRDRDG 239
Query: 285 FVMGEGAGVLVMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLE 344
FVMGEGAG+LV+E+LEHA+ RGAP +AE +G + DAYHMT DG G + +L
Sbjct: 240 FVMGEGAGILVIETLEHALARGAPPLAELVGYGTSADAYHMTAGPEDGEGARRAMLIALR 299
Query: 345 DAGVSPEEVNYINAHATSTLAGDLAEINAIKKVFKNTTGIKINATKSMIGHCLGAAGGLE 404
AG+ PEEV ++NAHATST GDL E+ AIKKVF + +G+ +++TKS GH LGAAGG+E
Sbjct: 300 QAGIPPEEVQHLNAHATSTPVGDLGEVAAIKKVFGHVSGLAVSSTKSATGHLLGAAGGVE 359
Query: 405 AIATVKAITTGWLHPSINQFNPEPSVE-FDTVANKKQQHEVNVAISNSFGFGGHNSVVAF 463
AI T+ A+ P++N NP+P+ E D VANK + +++ A+SN FGFGG N+ + F
Sbjct: 360 AIFTILALRDQIAPPTLNLENPDPAAEGLDVVANKARPMDMDYALSNGFGFGGVNASILF 419
Query: 464 SAFKP 468
++P
Sbjct: 420 RRWEP 424
|
Length = 424 |
| >gnl|CDD|235987 PRK07314, PRK07314, 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed | Back alignment and domain information |
|---|
Score = 550 bits (1419), Expect = 0.0
Identities = 203/410 (49%), Positives = 283/410 (69%), Gaps = 4/410 (0%)
Query: 55 KKRVVITGMGLVSVFGNDVDAYYNKLLDGESGITMIDRFDASKFPTRFGGQIRGFSAEGY 114
K+RVV+TG+G VS GNDV++ + LL G+SGI I FD S + G+++ F+ + Y
Sbjct: 1 KRRVVVTGLGAVSPLGNDVESTWKNLLAGKSGIGPITHFDTSDLAVKIAGEVKDFNPDDY 60
Query: 115 IDGKNDRRLDDCLRYCIVAGKKALEDADLGADISKKIDKERAGVLVGTGMGGLTVFSDGV 174
+ K RR+D ++Y I A K+A+EDA L +I++ + +R GV++G+G+GGL +
Sbjct: 61 MSRKEARRMDRFIQYGIAAAKQAVEDAGL--EITE-ENADRIGVIIGSGIGGLETIEEQH 117
Query: 175 QALIEKGHRKITPFFIPYAITNMGSALLAIDLGFMGPNYSISTACATSNYCFYAAANHIR 234
L+EKG R+++PFF+P AI NM + ++I G GPN+SI TACAT + AA I
Sbjct: 118 ITLLEKGPRRVSPFFVPMAIINMAAGHVSIRYGAKGPNHSIVTACATGAHAIGDAARLIA 177
Query: 235 RGEADLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWDKDRDGFVMGEGAGVL 294
G+AD+M+AGG EAAI P+G+ GF A RALS RNDDP+ ASRP+DKDRDGFVMGEGAG+L
Sbjct: 178 YGDADVMVAGGAEAAITPLGIAGFAAARALSTRNDDPERASRPFDKDRDGFVMGEGAGIL 237
Query: 295 VMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAGVSPEEVN 354
V+E LEHA RGA I AE +G + DAYHMT P DG G + ++ +L+DAG++PE+++
Sbjct: 238 VLEELEHAKARGAKIYAEVVGYGMTGDAYHMTAPAPDGEGAARAMKLALKDAGINPEDID 297
Query: 355 YINAHATSTLAGDLAEINAIKKVFKNTTG-IKINATKSMIGHCLGAAGGLEAIATVKAIT 413
YINAH TST AGD AE AIK+VF + +++TKSM GH LGAAG +EAI +V AI
Sbjct: 298 YINAHGTSTPAGDKAETQAIKRVFGEHAYKVAVSSTKSMTGHLLGAAGAVEAIFSVLAIR 357
Query: 414 TGWLHPSINQFNPEPSVEFDTVANKKQQHEVNVAISNSFGFGGHNSVVAF 463
+ P+IN NP+ + D V N+ ++ +++ A+SNSFGFGG N+ + F
Sbjct: 358 DQVIPPTINLDNPDEECDLDYVPNEARERKIDYALSNSFGFGGTNASLVF 407
|
Length = 411 |
| >gnl|CDD|223381 COG0304, FabB, 3-oxoacyl-(acyl-carrier-protein) synthase [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 478 bits (1233), Expect = e-168
Identities = 193/412 (46%), Positives = 265/412 (64%), Gaps = 8/412 (1%)
Query: 55 KKRVVITGMGLVSVFGNDVDAYYNKLLDGESGITMIDRFDASKFPTRFGGQIRGFSAEGY 114
+RVVITG+G+VS GN V+ + LL G+SGI I RFDAS + G+I+
Sbjct: 2 MRRVVITGLGIVSSLGNGVEEVWAALLAGKSGIRPITRFDASGLGVKIAGEIKDLDD--Q 59
Query: 115 IDGKNDRRLDDCLRYCIVAGKKALEDADLGADISKKIDKERAGVLVGTGMGGLTVFSDGV 174
I K R +D + +VA +ALEDA L +++ R GV +G+G+GGL +
Sbjct: 60 IAKKERRFMDRFSQLAVVAAVEALEDAGLDNELNVD---MRVGVAIGSGIGGLEDIEFDL 116
Query: 175 QALIEKGHRK-ITPFFIPYAITNMGSALLAIDLGFMGPNYSISTACATSNYCFYAAANHI 233
AL+ +G RK I+PF +P + N+ + +AI G GPNY+ TACAT + A I
Sbjct: 117 DALLLEGLRKRISPFLVPKMLPNLAAGNVAIVFGLKGPNYTPVTACATGAHAIGDAVRLI 176
Query: 234 RRGEADLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWDKDRDGFVMGEGAGV 293
R G+AD+++AGG EAAI P+G+ GF A RALS RNDDP+ ASRP+DK+RDGFV+GEGAG
Sbjct: 177 RLGKADVVIAGGAEAAITPLGIAGFEAMRALSTRNDDPEKASRPFDKNRDGFVIGEGAGA 236
Query: 294 LVMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAGVSPEEV 353
LV+E LEHA+ RGA I AE +G DAYH+T P DG G + ++L DAG++PE++
Sbjct: 237 LVLEELEHALARGAKIYAEIVGYGTTSDAYHITAPAPDGEGAIRAMRAALADAGLTPEDI 296
Query: 354 NYINAHATSTLAGDLAEINAIKKVFKNT-TGIKINATKSMIGHCLGAAGGLEAIATVKAI 412
+YINAH TST A D AE AIK+VF + +++TKS+ GH LGAAG +EAI ++ A+
Sbjct: 297 DYINAHGTSTPANDKAESLAIKRVFGEHAKSLPVSSTKSLTGHTLGAAGAVEAIISLLAL 356
Query: 413 TTGWLHPSINQFNPEP-SVEFDTVANKKQQHEVNVAISNSFGFGGHNSVVAF 463
G + P+IN NP+P + + D V N+ + V A+SNSFGFGG N+ + F
Sbjct: 357 RDGIIPPTINLDNPDPEAADLDVVPNEARTGAVRAALSNSFGFGGTNASLVF 408
|
Length = 412 |
| >gnl|CDD|240245 PTZ00050, PTZ00050, 3-oxoacyl-acyl carrier protein synthase; Provisional | Back alignment and domain information |
|---|
Score = 400 bits (1029), Expect = e-137
Identities = 167/424 (39%), Positives = 248/424 (58%), Gaps = 25/424 (5%)
Query: 65 LVSVFGNDVDAYYNKLLDGESGITMIDRFDA----------------SKFPTRFGGQIRG 108
+V+ G ++ + L+ G+SGI + F + P + ++
Sbjct: 1 VVTPLGVGAESTWEALIAGKSGIRKLTEFPKFLPDCIPEQKALENLVAAMPCQIAAEVDQ 60
Query: 109 FSAEGYIDGKNDRRLDDCLRYCIVAGKKALEDADLGADISKKIDKERAGVLVGTGMGGLT 168
S D +R + + A ++AL DA L DI + D+ER GV +G+G+G L
Sbjct: 61 -SEFDPSDFAPTKRESRATHFAMAAAREALADAKL--DILSEKDQERIGVNIGSGIGSLA 117
Query: 169 VFSDGVQALIEKGHRKITPFFIPYAITNMGSALLAIDLGFMGPNYSISTACATSNYCFYA 228
+D ++ L EKGH +++P+FIP + NM + L+AI GP+ S TACAT +C
Sbjct: 118 DLTDEMKTLYEKGHSRVSPYFIPKILGNMAAGLVAIKHKLKGPSGSAVTACATGAHCIGE 177
Query: 229 AANHIRRGEADLMLAGGTEAAIIPIGLGGFVACRALSQR-NDDPQTASRPWDKDRDGFVM 287
A I+ GEAD+M+ GGTEA+I P+ GF RAL + NDDPQ ASRP+DKDR GFVM
Sbjct: 178 AFRWIKYGEADIMICGGTEASITPVSFAGFSRMRALCTKYNDDPQRASRPFDKDRAGFVM 237
Query: 288 GEGAGVLVMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAG 347
GEGAG+LV+E LEHA++RGA I AE G + DA+H+T P DG G C+E++L+D
Sbjct: 238 GEGAGILVLEELEHALRRGAKIYAEIRGYGSSSDAHHITAPHPDGRGARRCMENALKDGA 297
Query: 348 -VSPEEVNYINAHATSTLAGDLAEINAIKKVFKNTTGIK--INATKSMIGHCLGAAGGLE 404
++ +V+Y+NAHATST GD E+ AIKKVF ++ K +++TK +GH LGAAG +E
Sbjct: 298 NININDVDYVNAHATSTPIGDKIELKAIKKVFGDSGAPKLYVSSTKGGLGHLLGAAGAVE 357
Query: 405 AIATVKAITTGWLHPSINQFNPEPSVEFDTVANKKQQHEVNV--AISNSFGFGGHNSVVA 462
+I T+ ++ + P+IN NP+ + + V K ++ +S SFGFGG N+ +
Sbjct: 358 SIVTILSLYEQIIPPTINLENPDAECDLNLVQGKTAHPLQSIDAVLSTSFGFGGVNTALL 417
Query: 463 FSAF 466
F+ +
Sbjct: 418 FTKY 421
|
Length = 421 |
| >gnl|CDD|181539 PRK08722, PRK08722, 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed | Back alignment and domain information |
|---|
Score = 382 bits (982), Expect = e-130
Identities = 196/415 (47%), Positives = 279/415 (67%), Gaps = 6/415 (1%)
Query: 55 KKRVVITGMGLVSVFGNDVDAYYNKLLDGESGITMIDRFDASKFPTRFGGQIRGFSAEGY 114
K+RVV+TGMG++S GN V++ + LL G+SGI I+ FD + F TRF G ++ F+ E Y
Sbjct: 3 KRRVVVTGMGMLSPVGNTVESSWKALLAGQSGIVNIEHFDTTNFSTRFAGLVKDFNCEEY 62
Query: 115 IDGKNDRRLDDCLRYCIVAGKKALEDADLGADISKKIDKERAGVLVGTGMGGLTVFSDGV 174
+ K+ R++D ++Y I AG +AL+D+ G +++++ + R GV +G+G+GGL + G
Sbjct: 63 MSKKDARKMDLFIQYGIAAGIQALDDS--GLEVTEE-NAHRIGVAIGSGIGGLGLIEAGH 119
Query: 175 QALIEKGHRKITPFFIPYAITNMGSALLAIDLGFMGPNYSISTACATSNYCFYAAANHIR 234
QAL+EKG RK++PFF+P I NM + L+I G GPN +ISTAC T + AA I
Sbjct: 120 QALVEKGPRKVSPFFVPSTIVNMIAGNLSIMRGLRGPNIAISTACTTGLHNIGHAARMIA 179
Query: 235 RGEADLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWDKDRDGFVMGEGAGVL 294
G+AD M+AGG E A P+G+ GF A +ALS RND+PQ ASRPWDKDRDGFV+G+GAG++
Sbjct: 180 YGDADAMVAGGAEKASTPLGMAGFGAAKALSTRNDEPQKASRPWDKDRDGFVLGDGAGMM 239
Query: 295 VMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAGVSPEEVN 354
V+E EHA RGA I AE +G ++ DAYHMT P DG G + +E+++ DAGV+ E++
Sbjct: 240 VLEEYEHAKARGAKIYAELVGFGMSGDAYHMTSPSEDGSGGALAMEAAMRDAGVTGEQIG 299
Query: 355 YINAHATSTLAGDLAEINAIKKVF--KNTTGIKINATKSMIGHCLGAAGGLEAIATVKAI 412
Y+NAH TST AGD+AEI IK+ + + +++TKSM GH LGAAG +EAI TV ++
Sbjct: 300 YVNAHGTSTPAGDVAEIKGIKRALGEAGSKQVLVSSTKSMTGHLLGAAGSVEAIITVMSL 359
Query: 413 TTGWLHPSINQFNPEPSVEFDTVANKKQQHE-VNVAISNSFGFGGHNSVVAFSAF 466
+ P+IN +PE ++ D V + ++ E + AI NSFGFGG N + F
Sbjct: 360 VDQIVPPTINLDDPEEGLDIDLVPHTARKVESMEYAICNSFGFGGTNGSLIFKKM 414
|
Length = 414 |
| >gnl|CDD|236265 PRK08439, PRK08439, 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed | Back alignment and domain information |
|---|
Score = 374 bits (963), Expect = e-127
Identities = 180/410 (43%), Positives = 254/410 (61%), Gaps = 8/410 (1%)
Query: 56 KRVVITGMGLVSVFGNDVDAYYNKLLDGESGITMIDRFDASKFPTRFGGQIRGFSAEGYI 115
KRVV+TG+G+++ G + ++ + + +GE GI I FDAS FP + G+I F +
Sbjct: 2 KRVVVTGIGMINSLGLNKESSFKAICNGECGIKKITLFDASDFPVQIAGEITDFDPTEVM 61
Query: 116 DGKNDRRLDDCLRYCIVAGKKALEDADLGADISKKIDKERAGVLVGTGMGGLTVFSDGVQ 175
D K ++ D ++ + A ++A++DA + +++D ER GV +G+GGL
Sbjct: 62 DPKEVKKADRFIQLGLKAAREAMKDAGF---LPEELDAERFGVSSASGIGGLPNIEKNSI 118
Query: 176 ALIEKGHRKITPFFIPYAITNMGSALLAIDLGFMGPNYSISTACATSNYCFYAAANHIRR 235
EKG RKI+PFFIP A+ NM ++I+ G GPN S TACA + A I
Sbjct: 119 ICFEKGPRKISPFFIPSALVNMLGGFISIEHGLKGPNLSSVTACAAGTHAIIEAVKTIML 178
Query: 236 GEADLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWDKDRDGFVMGEGAGVLV 295
G AD ML G E+AI P+G+GGF A +ALS RNDDP+ ASRP+DKDRDGFVMGEGAG LV
Sbjct: 179 GGADKMLVVGAESAICPVGIGGFAAMKALSTRNDDPKKASRPFDKDRDGFVMGEGAGALV 238
Query: 296 MESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAGVSPEEVNY 355
+E E A KRGA I AE +G + DA H+T P + G ++++LE AG +++Y
Sbjct: 239 LEEYESAKKRGAKIYAEIIGFGESGDANHITSPAPE--GPLRAMKAALEMAGNP--KIDY 294
Query: 356 INAHATSTLAGDLAEINAIKKVFKNTTGI-KINATKSMIGHCLGAAGGLEAIATVKAITT 414
INAH TST D E A+K++F + + +++TK IGHCLGAAG +EA+ ++ A+
Sbjct: 295 INAHGTSTPYNDKNETAALKELFGSKEKVPPVSSTKGQIGHCLGAAGAIEAVISIMAMRD 354
Query: 415 GWLHPSINQFNPEPSVEFDTVANKKQQHEVNVAISNSFGFGGHNSVVAFS 464
G L P+INQ P+P + D + N ++ E+NV +SNSFGFGG N VV F
Sbjct: 355 GILPPTINQETPDPECDLDYIPNVARKAELNVVMSNSFGFGGTNGVVIFK 404
|
Length = 406 |
| >gnl|CDD|215449 PLN02836, PLN02836, 3-oxoacyl-[acyl-carrier-protein] synthase | Back alignment and domain information |
|---|
Score = 338 bits (868), Expect = e-112
Identities = 173/438 (39%), Positives = 249/438 (56%), Gaps = 32/438 (7%)
Query: 54 PKKRVVITGMGLVSVFGNDVDAYYNKLLDGESGI--------------TMIDRFDASKFP 99
P +RVV+TG+GLV+ G V+ + +L+ GE G+ + + P
Sbjct: 4 PTRRVVVTGLGLVTPLGCGVETTWRRLIAGECGVRALTQDDLKMKSEDEETQLYTLDQLP 63
Query: 100 TRFGGQIRGFSAEGYIDGK---NDRRLDDCLRYCIVAGKKALEDADLGADISKKIDKERA 156
+R + + G D + N R + Y + A +AL DA S+ KER
Sbjct: 64 SRVAALVPRGTGPGDFDEELWLNSRSSSRFIGYALCAADEALSDARWLP--SEDEAKERT 121
Query: 157 GVLVGTGMGGLTVFSDGVQALIEKGHRKITPFFIPYAITNMGSALLAIDLGFMGPNYSIS 216
GV +G G+G +T + Q + EK R+++PFF+P + NM + ++I GF GPN++
Sbjct: 122 GVSIGGGIGSITDILEAAQLICEKRLRRLSPFFVPRILINMAAGHVSIRYGFQGPNHAAV 181
Query: 217 TACATSNYCFYAAANHIRRGEADLMLAGGTEAAIIPIGLGGFVACRALSQR-NDDPQTAS 275
TACAT + A I+ G+AD+M+AGGTE++I + + GF RALS + N P AS
Sbjct: 182 TACATGAHSIGDAFRMIQFGDADVMVAGGTESSIDALSIAGFSRSRALSTKFNSCPTEAS 241
Query: 276 RPWDKDRDGFVMGEGAGVLVMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGV 335
RP+D DRDGFV+GEGAGVLV+E LEHA +RGA I AE G ++ DA+H+T P DG G
Sbjct: 242 RPFDCDRDGFVIGEGAGVLVLEELEHAKRRGAKIYAEVRGYGMSGDAHHITQPHEDGRGA 301
Query: 336 SSCIESSLEDAGVSPEEVNYINAHATSTLAGDLAEINAIKKVFKN---TTGIKINATKSM 392
+ +L+ +G+ P +V+Y+NAHATST GD E AIK VF + G+ ++TK
Sbjct: 302 VLAMTRALQQSGLHPNQVDYVNAHATSTPLGDAVEARAIKTVFSEHATSGGLAFSSTKGA 361
Query: 393 IGHCLGAAGGLEAIATVKAITTGWLHPSINQFNPEPSVEFDT-----VANKKQQHEVNVA 447
GH LGAAG +EAI +V AI G P++N P+P FD A+K + A
Sbjct: 362 TGHLLGAAGAVEAIFSVLAIHHGIAPPTLNLERPDPI--FDDGFVPLTASKAML--IRAA 417
Query: 448 ISNSFGFGGHNSVVAFSA 465
+SNSFGFGG N+ + F++
Sbjct: 418 LSNSFGFGGTNASLLFTS 435
|
Length = 437 |
| >gnl|CDD|236129 PRK07910, PRK07910, 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed | Back alignment and domain information |
|---|
Score = 284 bits (728), Expect = 1e-91
Identities = 139/412 (33%), Positives = 216/412 (52%), Gaps = 10/412 (2%)
Query: 58 VVITGMGLVSVFGNDVDAYYNKLLDGESGITMIDRFDASKF--PTRFGGQIRGFSAEGYI 115
VV+TG+ + + D + + LLDG+SGI +D +F P R GG +
Sbjct: 14 VVVTGIAMTTALATDAETTWKLLLDGQSGIRTLDDPFVEEFDLPVRIGGHLLEEFDHQLT 73
Query: 116 DGKNDRRLDDCLRYCIVAGKKALEDADLGADISKKIDKERAGVLVGTGMGGLTVFSDGVQ 175
+ RR+ R V G++ E+A S ++D R V +GTG+G
Sbjct: 74 RVEL-RRMSYLQRMSTVLGRRVWENAG-----SPEVDTNRLMVSIGTGLGSAEELVFAYD 127
Query: 176 ALIEKGHRKITPFFIPYAITNMGSALLAIDLGFMGPNYSISTACATSNYCFYAAANHIRR 235
+ +G R ++P + + N +A + ++ + +ACA+ + A I
Sbjct: 128 DMRARGLRAVSPLAVQMYMPNGPAAAVGLERHAKAGVITPVSACASGSEAIAQAWRQIVL 187
Query: 236 GEADLMLAGGTEAAIIPIGLGGFVACRA-LSQRNDDPQTASRPWDKDRDGFVMGEGAGVL 294
GEAD+ + GG E I + + GF R +S NDDP A RP+DKDRDGFV GEG ++
Sbjct: 188 GEADIAICGGVETRIEAVPIAGFAQMRIVMSTNNDDPAGACRPFDKDRDGFVFGEGGALM 247
Query: 295 VMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAGVSPEEVN 354
V+E+ EHA RGA I+A +G ++ D +HM P +G + ++E AG++P +++
Sbjct: 248 VIETEEHAKARGANILARIMGASITSDGFHMVAPDPNGERAGHAMTRAIELAGLTPGDID 307
Query: 355 YINAHATSTLAGDLAEINAIKKVFKNTTGIKINATKSMIGHCLGAAGGLEAIATVKAITT 414
++NAHAT T GD+AE AI + A KS +GH +GA G +E+I TV A+
Sbjct: 308 HVNAHATGTSVGDVAEGKAINNALGGHRP-AVYAPKSALGHSVGAVGAVESILTVLALRD 366
Query: 415 GWLHPSINQFNPEPSVEFDTVANKKQQHEVNVAISNSFGFGGHNSVVAFSAF 466
G + P++N N +P ++ D VA + + AI+NSFGFGGHN +AF +
Sbjct: 367 GVIPPTLNLENLDPEIDLDVVAGEPRPGNYRYAINNSFGFGGHNVALAFGRY 418
|
Length = 418 |
| >gnl|CDD|181184 PRK07967, PRK07967, 3-oxoacyl-(acyl carrier protein) synthase I; Reviewed | Back alignment and domain information |
|---|
Score = 267 bits (684), Expect = 3e-85
Identities = 154/421 (36%), Positives = 225/421 (53%), Gaps = 26/421 (6%)
Query: 56 KRVVITGMGLVSVFGNDVDAYYNKLLDGESGITMIDRFDASKFPTRFGGQIRGFSAEGYI 115
+RVVITG+G+VS GN+ L +G SGIT F ++ G ++ G I
Sbjct: 2 RRVVITGLGIVSSIGNNQQEVLASLREGRSGITFSPEFAEMGMRSQVWGNVK-LDPTGLI 60
Query: 116 DGKNDRRLDDCLRYCIVAGKKALEDADLGADISKKIDKERAGVLVGTGMGGLTVFSDGVQ 175
D K R + D Y +A ++A+ DA L + ++ R G++ G+G G +
Sbjct: 61 DRKVMRFMGDASAYAYLAMEQAIADAGLSEE---QVSNPRTGLIAGSGGGSTRNQVEAAD 117
Query: 176 ALIE-KGHRKITPFFIPYAITNMGSALLAIDLGFMGPNYSISTACATSNYCFYAAANHIR 234
A+ +G +++ P+ + A+ + SA LA G NYSIS+ACATS +C A I+
Sbjct: 118 AMRGPRGPKRVGPYAVTKAMASTVSACLATPFKIKGVNYSISSACATSAHCIGNAVEQIQ 177
Query: 235 RGEADLMLAGGTE------AAIIPIGLGGFVACRALS-QRNDDPQTASRPWDKDRDGFVM 287
G+ D++ AGG E + + F A ALS + ND P+ ASR +D +RDGFV+
Sbjct: 178 LGKQDIVFAGGGEELDWEMSCL-------FDAMGALSTKYNDTPEKASRAYDANRDGFVI 230
Query: 288 GEGAGVLVMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAG 347
G GV+V+E LEHA+ RGA I AE +G D Y M P G G C++ +L A
Sbjct: 231 AGGGGVVVVEELEHALARGAKIYAEIVGYGATSDGYDMVAP--SGEGAVRCMQMAL--AT 286
Query: 348 VSPEEVNYINAHATSTLAGDLAEINAIKKVFKNTTGIKINATKSMIGHCLGAAGGLEAIA 407
V ++YIN H TST GD+ E+ AI++VF + + I+ATKS+ GH LGAAG EAI
Sbjct: 287 VD-TPIDYINTHGTSTPVGDVKELGAIREVFGDKSP-AISATKSLTGHSLGAAGVQEAIY 344
Query: 408 TVKAITTGWLHPSINQFNPEPSVE-FDTVANKKQQHEVNVAISNSFGFGGHNSVVAFSAF 466
++ + G++ PS N +P V E+ +SNSFGFGG N+ + F +
Sbjct: 345 SLLMMEHGFIAPSANIEELDPQAAGMPIVTETTDNAELTTVMSNSFGFGGTNATLVFRRY 404
Query: 467 K 467
K
Sbjct: 405 K 405
|
Length = 406 |
| >gnl|CDD|181657 PRK09116, PRK09116, 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed | Back alignment and domain information |
|---|
Score = 258 bits (662), Expect = 5e-82
Identities = 140/423 (33%), Positives = 207/423 (48%), Gaps = 35/423 (8%)
Query: 56 KRVVITGMGLVSVFGNDVDAYYNKLLDGESGITMIDRFDASKFP---TRFGGQIRGFSAE 112
+RVV+TGMG V+ G D +L G + + + +D ++ TR I F
Sbjct: 2 RRVVVTGMGGVTALGEDWQTIAARLKAGRNAVRRMPEWD--RYDGLNTRLAAPIDDFELP 59
Query: 113 GYIDGKNDRRLDDCLRYCIVAGKKALEDADLGADISKKIDKERAGVLVGTGMGGLTVFSD 172
+ K R + A + ALEDA L D + R G+ G+ G
Sbjct: 60 AHYTRKKIRSMGRVSLMATRASELALEDAGLLGDPI--LTDGRMGIAYGSSTGSTDPIGA 117
Query: 173 GVQALIEKGHRKITPF----FIPY-AITNMGSALLAIDLGFMGPNYSISTACATSNYCFY 227
L+E IT +P+ N+G + G G S+AC + +
Sbjct: 118 FGTMLLEGSMSGITATTYVRMMPHTTAVNVG-----LFFGLKGRVIPTSSACTSGSQGIG 172
Query: 228 AAANHIRRGEADLMLAGG------TEAAIIPIGLGGFVACRALSQRNDDPQTASRPWDKD 281
A I+ G +MLAGG TEAA+ F A S RND P+ RP+D +
Sbjct: 173 YAYEAIKYGYQTVMLAGGAEELCPTEAAV-------FDTLFATSTRNDAPELTPRPFDAN 225
Query: 282 RDGFVMGEGAGVLVMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIES 341
RDG V+GEGAG LV+E LEHA RGA I AE +G N D H+T P+A+ + + +E
Sbjct: 226 RDGLVIGEGAGTLVLEELEHAKARGATIYAEIVGFGTNSDGAHVTQPQAETMQI--AMEL 283
Query: 342 SLEDAGVSPEEVNYINAHATSTLAGDLAEINAIKKVFKNTTGIKINATKSMIGHCLGAAG 401
+L+DAG++PE++ Y+NAH T+T GD+AE A VF I++ KS GH LGA G
Sbjct: 284 ALKDAGLAPEDIGYVNAHGTATDRGDIAESQATAAVFGARM--PISSLKSYFGHTLGACG 341
Query: 402 GLEAIATVKAITTGWLHPSINQFNPEPSV-EFDTVANKKQQHEVNVAISNSFGFGGHNSV 460
LEA +++ + GW P++N +P+ D + + ++ + +SN+F FGG N+
Sbjct: 342 ALEAWMSIEMMNEGWFAPTLNLTQVDPACGALDYIMGEAREIDTEYVMSNNFAFGGINTS 401
Query: 461 VAF 463
+ F
Sbjct: 402 LIF 404
|
Length = 405 |
| >gnl|CDD|173154 PRK14691, PRK14691, 3-oxoacyl-(acyl carrier protein) synthase II; Provisional | Back alignment and domain information |
|---|
Score = 250 bits (639), Expect = 2e-79
Identities = 138/319 (43%), Positives = 195/319 (61%), Gaps = 4/319 (1%)
Query: 145 ADISKKIDKERAGVLVGTGMGGLTVFSDGVQALIEKGHRKITPFFIPYAITNMGSALLAI 204
AD ++K +ER ++G G+GG + V+ +G ++++PF +P + N+ + ++I
Sbjct: 19 ADNTEK--QERTATIIGAGIGGFPAIAHAVRTSDSRGPKRLSPFTVPSFLVNLAAGHVSI 76
Query: 205 DLGFMGPNYSISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAIIPIGLGGFVACRAL 264
F GP + TACA A IR EAD+ L GG EA I + L GF A RAL
Sbjct: 77 KHHFKGPIGAPVTACAAGVQAIGDAVRMIRNNEADVALCGGAEAVIDTVSLAGFAAARAL 136
Query: 265 SQR-NDDPQTASRPWDKDRDGFVMGEGAGVLVMESLEHAMKRGAPIIAEYLGGAVNCDAY 323
S N P+ ASRP+D RDGFVMGEGAG+L++E LEHA+ RGA +AE +G + DAY
Sbjct: 137 STHFNSTPEKASRPFDTARDGFVMGEGAGLLIIEELEHALARGAKPLAEIVGYGTSADAY 196
Query: 324 HMTDPRADGLGVSSCIESSLEDAGVSPEEVNYINAHATSTLAGDLAEINAIKKVFKNTTG 383
HMT DG G ++ +L AG++PE+V ++NAHATST GDL EINAIK +F +
Sbjct: 197 HMTSGAEDGDGAYRAMKIALRQAGITPEQVQHLNAHATSTPVGDLGEINAIKHLFGESNA 256
Query: 384 IKINATKSMIGHCLGAAGGLEAIATVKAITTGWLHPSINQFNPEPSVE-FDTVANKKQQH 442
+ I +TKS GH LGAAGGLE I TV A+ + ++N NP+P+ + + +A Q H
Sbjct: 257 LAITSTKSATGHLLGAAGGLETIFTVLALRDQIVPATLNLENPDPAAKGLNIIAGNAQPH 316
Query: 443 EVNVAISNSFGFGGHNSVV 461
++ A+SN FGF G N+ +
Sbjct: 317 DMTYALSNGFGFAGVNASI 335
|
Length = 342 |
| >gnl|CDD|235817 PRK06501, PRK06501, 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed | Back alignment and domain information |
|---|
Score = 251 bits (642), Expect = 9e-79
Identities = 144/419 (34%), Positives = 198/419 (47%), Gaps = 20/419 (4%)
Query: 58 VVITGMGLVSVFGNDVDAYYNKLLDGESGITMIDRFDASKFPTRFGGQIRGFSAEGYIDG 117
V +TGMG+V+ G + L GESGI I RF TR G + +
Sbjct: 13 VAVTGMGVVTSLGQGKADNWAALTAGESGIHTITRFPTEGLRTRIAGTVDFLPESPFGAS 72
Query: 118 KNDRRLDDCLRYCIVAGKKALEDADLGAD--------ISKKIDKERAGVLVGTGMGGLTV 169
L +A ++AL A +G + ++ E G
Sbjct: 73 ALSEALAR------LAAEEALAQAGIGKGDFPGPLFLAAPPVELEWPARFALAAAVGDND 126
Query: 170 FSDGVQALIEKGHRKITPFFIPYAITNMGS--ALLAIDLGFMGPNYSISTACATSNYCFY 227
+ L + GS LA G G S+STACA+
Sbjct: 127 APSYDRLLRAARGGRFDALH---ERFQFGSIADRLADRFGTRGLPISLSTACASGATAIQ 183
Query: 228 AAANHIRRGEADLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWDKDRDGFVM 287
IRRGE D L T+ ++ L F ALS +ND P+ AS+P+ KDRDGFVM
Sbjct: 184 LGVEAIRRGETDRALCIATDGSVSAEALIRFSLLSALSTQNDPPEKASKPFSKDRDGFVM 243
Query: 288 GEGAGVLVMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAG 347
EGAG LV+ESLE A+ RGA I+ G D++H T DG I ++L DAG
Sbjct: 244 AEGAGALVLESLESAVARGAKILGIVAGCGEKADSFHRTRSSPDGSPAIGAIRAALADAG 303
Query: 348 VSPEEVNYINAHATSTLAGDLAEINAIKKVF-KNTTGIKINATKSMIGHCLGAAGGLEAI 406
++PE+++YINAH TST D E + VF + I +++ KSMIGH L AAG +EA+
Sbjct: 304 LTPEQIDYINAHGTSTPENDKMEYLGLSAVFGERLASIPVSSNKSMIGHTLTAAGAVEAV 363
Query: 407 ATVKAITTGWLHPSINQFNPEPSVEFDTVANKKQQHEVNVAISNSFGFGGHNSVVAFSA 465
++ I TG L P+IN NP+P++ D V N + V +SNSFGFGG N+ + +A
Sbjct: 364 FSLLTIQTGRLPPTINYDNPDPAIPLDVVPNVARDARVTAVLSNSFGFGGQNASLVLTA 422
|
Length = 425 |
| >gnl|CDD|238424 cd00828, elong_cond_enzymes, "elongating" condensing enzymes are a subclass of decarboxylating condensing enzymes, including beta-ketoacyl [ACP] synthase, type I and II and polyketide synthases | Back alignment and domain information |
|---|
Score = 248 bits (635), Expect = 5e-78
Identities = 142/414 (34%), Positives = 215/414 (51%), Gaps = 19/414 (4%)
Query: 57 RVVITGMGLVS---VFGNDVDAYYNKLLDGESGITMIDRFDASKFPTRFGGQIRGFSAEG 113
RVVITG+G+VS ++V+ ++ L +G SGI + R S+F GQI G
Sbjct: 2 RVVITGIGVVSPHGEGCDEVEEFWEALREGRSGIAPVARLK-SRFDRGVAGQIPTGDIPG 60
Query: 114 YIDGKNDRRLDDCLRYCIVAGKKALEDADLGADISKKIDKERAGVLVGTGMGGLTVFSDG 173
+ D K +D +VA ++AL DA + ++ GV+VG+GMGGL G
Sbjct: 61 W-DAKRTGIVDRTTLLALVATEEALADAGITDP--YEVHPSEVGVVVGSGMGGLRFLRRG 117
Query: 174 VQALIEKGHRKITPFFIPYAI--TNMGSALLAIDLGFM-GPNYSISTACATSNYCFYAAA 230
+ R + P+ P + N + + I L GP + ACAT+ A
Sbjct: 118 GKLD----ARAVNPYVSPKWMLSPNTVAGWVNILLLSSHGPIKTPVGACATALEALDLAV 173
Query: 231 NHIRRGEADLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWDKDRDGFVMGEG 290
IR G+AD+++ GG E + GL GF ALS ++P+ SRP+D+ RDGFV EG
Sbjct: 174 EAIRSGKADIVVVGGVED-PLEEGLSGFANMGALSTAEEEPEEMSRPFDETRDGFVEAEG 232
Query: 291 AGVLVMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAGVSP 350
AGVLV+E E A+ RGAPI G A D + P A G G++ I ++L AG+S
Sbjct: 233 AGVLVLERAELALARGAPIYGRVAGTASTTDGAGRSVP-AGGKGIARAIRTALAKAGLSL 291
Query: 351 EEVNYINAHATSTLAGDLAEINAIKKVFKNTTG-IKINATKSMIGHCLGAAGGLEAIATV 409
++++ I+AH TST A D+AE AI +V + + A K++ GH GAAG L+ I +
Sbjct: 292 DDLDVISAHGTSTPANDVAESRAIAEVAGALGAPLPVTAQKALFGHSKGAAGALQLIGAL 351
Query: 410 KAITTGWLHPSIN--QFNPEPSVEFDTVANKKQQHEVNVAISNSFGFGGHNSVV 461
+++ G + P+ N +P+ ++ +V A+ N+FGFGG N+ +
Sbjct: 352 QSLEHGLIPPTANLDDVDPDVEHLSVVGLSRDLNLKVRAALVNAFGFGGSNAAL 405
|
They are characterized by the utlization of acyl carrier protein (ACP) thioesters as primer substrates, as well as the nature of their active site residues. Length = 407 |
| >gnl|CDD|180839 PRK07103, PRK07103, polyketide beta-ketoacyl:acyl carrier protein synthase; Validated | Back alignment and domain information |
|---|
Score = 232 bits (594), Expect = 7e-72
Identities = 130/422 (30%), Positives = 201/422 (47%), Gaps = 31/422 (7%)
Query: 55 KKRVVITGMGLVSVFGNDVDAYYNKLLDGESGITMIDR--------FDASKFPTRFGGQI 106
VV+TG+G+VS G ++ LL G ++ R A G ++
Sbjct: 1 MDEVVVTGVGVVSAIGQGRPSFAAALLAGRHAFGVMRRPGRQVPDDAGAGLASAFIGAEL 60
Query: 107 RGFSAEGYIDGKNDRRLDDCLRYCIVAGKKALEDADLGADISKKIDKERAGVLVGTGMGG 166
+ +D K RR + + A ++A DA LG +D +R G++VG G
Sbjct: 61 DSLALPERLDAKLLRRASLSAQAALAAAREAWRDAALGP-----VDPDRIGLVVG----G 111
Query: 167 LTVFSDGVQALIEKGHRKITPFFIP--YAITNMGSALLAI---DLGFMGPNYSISTACAT 221
+ QAL+ + +R P F+ Y ++ M + L+ + G G +++ A A+
Sbjct: 112 SNLQQR-EQALVHETYRD-RPAFLRPSYGLSFMDTDLVGLCSEQFGIRGEGFTVGGASAS 169
Query: 222 SNYCFYAAANHIRRGEADLMLAGGTEAAIIPIGLGGFVACRAL-SQRN-DDPQTASRPWD 279
AA ++ G D +A G + + A+ S R D+P+ A RP+D
Sbjct: 170 GQLAVIQAARLVQSGSVDACIAVGALMDLSYWECQALRSLGAMGSDRFADEPEAACRPFD 229
Query: 280 KDRDGFVMGEGAGVLVMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCI 339
+DRDGF+ GE G +V+ES E A +RGA A+ LG ++ DA DP G I
Sbjct: 230 QDRDGFIYGEACGAVVLESAESARRRGARPYAKLLGWSMRLDANRGPDP--SLEGEMRVI 287
Query: 340 ESSLEDAGVSPEEVNYINAHATSTLAGDLAEINAIKKVFKNTTGIKINATKSMIGHCLGA 399
++L AG+ PE+++Y+N H T + GD E+ A+ INATKS+ GH L A
Sbjct: 288 RAALRRAGLGPEDIDYVNPHGTGSPLGDETELAALFAS--GLAHAWINATKSLTGHGLSA 345
Query: 400 AGGLEAIATVKAITTGWLHPSINQFNPEPSVEFDTVANKKQQHEVNVAISNSFGFGGHNS 459
AG +E IAT+ + G+LHPS N P F V + + + A+S SFGFGG N+
Sbjct: 346 AGIVELIATLLQMRAGFLHPSRNLDEPIDE-RFRWVGSTAESARIRYALSLSFGFGGINT 404
Query: 460 VV 461
+
Sbjct: 405 AL 406
|
Length = 410 |
| >gnl|CDD|215723 pfam00109, ketoacyl-synt, Beta-ketoacyl synthase, N-terminal domain | Back alignment and domain information |
|---|
Score = 210 bits (537), Expect = 1e-65
Identities = 83/252 (32%), Positives = 122/252 (48%), Gaps = 13/252 (5%)
Query: 55 KKRVVITGMGLVSVFGNDVDAYYNKLLDGESGITMIDR-FDASKFPTRFGGQIRGFSAEG 113
+ V ITGMG G + ++ LL G I P+R G+I GF +
Sbjct: 1 AEPVAITGMGCRFPGGVGPEEFWELLLAGRDAIREFPADLSGLYPPSRVAGEIYGFDFDA 60
Query: 114 YIDGKNDR---RLDDCLRYCIVAGKKALEDADLGADISKKIDKERAGVLVGTGMGGLTVF 170
G + R +D R + A +ALEDA G D + +R GV VG+G G +
Sbjct: 61 AFFGISPREAEAMDPQQRLALEAAWEALEDA--GLDPASLRGSDRTGVFVGSGSGD---Y 115
Query: 171 SDGVQALIEKGHRKITPFFIPYAITNMGSALLAIDLGFMGPNYSISTACATSNYCFYAAA 230
++ G R+++P+ + ++ + ++ LG GP+ ++ TAC++S +AA
Sbjct: 116 AELQALDSAGGPRRVSPYLTGAWMPSVAAGRISYRLGLRGPSVTVDTACSSSLVALHAAV 175
Query: 231 NHIRRGEADLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWDKDRDGFVMGEG 290
IRRGE DL LAGG EA + P G GF A AL D P A P+ DGFV GEG
Sbjct: 176 RSIRRGECDLALAGGVEAPLTPGGFAGFSAAGALLSP-DGPCKAFDPFA---DGFVRGEG 231
Query: 291 AGVLVMESLEHA 302
G ++++ L A
Sbjct: 232 VGAVLLKELSEA 243
|
The structure of beta-ketoacyl synthase is similar to that of the thiolase family (pfam00108) and also chalcone synthase. The active site of beta-ketoacyl synthase is located between the N and C-terminal domains. The N-terminal domain contains most of the structures involved in dimer formation and also the active site cysteine. Length = 243 |
| >gnl|CDD|235653 PRK05952, PRK05952, 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed | Back alignment and domain information |
|---|
Score = 205 bits (523), Expect = 9e-62
Identities = 132/419 (31%), Positives = 200/419 (47%), Gaps = 52/419 (12%)
Query: 57 RVVITGMGLVSVFGNDVDAYYNKLLDGESGITMIDRFDASKFPTRFGGQIRGFSAEGYID 116
+VV+TG+GLVS G D++ + +LL G+SGI + F + P G I
Sbjct: 3 KVVVTGIGLVSALG-DLEQSWQRLLQGKSGIKLHQPF--PELPPLPLGLI---------- 49
Query: 117 GKNDRRLDDCLRYCIVAGKKALEDADLGADISKKIDKERAGVLVGTGMGGLTVFSDGVQA 176
G L+D + + A AL+DA L + GV++G+ S G Q
Sbjct: 50 GNQPSSLEDLTKTVVTA---ALKDAGLTPPL------TDCGVVIGS--------SRGCQG 92
Query: 177 LIEKGHRKITPFFIPYAIT-----------NMGSALLAIDLGFMGPNYSISTACATSNYC 225
EK R++ + + A +G GP + ACAT +
Sbjct: 93 QWEKLARQMYQGDDSPDEELDLENWLDTLPHQAAIAAARQIGTQGPVLAPMAACATGLWA 152
Query: 226 FYAAANHIRRGEADLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWDKDRDGF 285
I+ G+ ++AG EA I P+ L GF AL++ T + P+D+ R+G
Sbjct: 153 IAQGVELIQTGQCQRVIAGAVEAPITPLTLAGFQQMGALAK------TGAYPFDRQREGL 206
Query: 286 VMGEGAGVLVMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLED 345
V+GEG +LV+ES E A KRGA I + LG + CDAYHM+ P DG + I+ L
Sbjct: 207 VLGEGGAILVLESAELAQKRGAKIYGQILGFGLTCDAYHMSAPEPDGKSAIAAIQQCLAR 266
Query: 346 AGVSPEEVNYINAHATSTLAGDLAEINAIKKVFKNTTGIKINATKSMIGHCLGAAGGLEA 405
+G++PE+++YI+AH T+T D E N I+ +F + +++TK GH LGA+G L
Sbjct: 267 SGLTPEDIDYIHAHGTATRLNDQREANLIQALFPHRVA--VSSTKGATGHTLGASGALGV 324
Query: 406 IATVKAITTGWLHPSINQFNPEPSVEFDTVANKKQQHEVNVAISNSFGFGGHNSVVAFS 464
++ A+ L P + PE + F A QQ + + SFGFGG N+ +A
Sbjct: 325 AFSLLALRHQQLPPCVGLQEPEFDLNFVRQA---QQSPLQNVLCLSFGFGGQNAAIALG 380
|
Length = 381 |
| >gnl|CDD|238429 cd00833, PKS, polyketide synthases (PKSs) polymerize simple fatty acids into a large variety of different products, called polyketides, by successive decarboxylating Claisen condensations | Back alignment and domain information |
|---|
Score = 202 bits (516), Expect = 3e-60
Identities = 121/435 (27%), Positives = 186/435 (42%), Gaps = 51/435 (11%)
Query: 57 RVVITGMGLVSVF--GNDVDAYYNKLLDGESGITMI--DRFDASKFPTRFGGQIRGFS-A 111
+ I GM F D D ++ LL+G I+ I DR+DA + G + ++
Sbjct: 2 PIAIVGMACR--FPGAADPDEFWENLLEGRDAISEIPEDRWDADGYYPDPGKPGKTYTRR 59
Query: 112 EGYIDGKND-------------RRLDDCLRYCIVAGKKALEDADLGADISKKIDKERAGV 158
G++D + +D R + +ALEDA + + R GV
Sbjct: 60 GGFLDDVDAFDAAFFGISPREAEAMDPQQRLLLEVAWEALEDAGYSPE---SLAGSRTGV 116
Query: 159 LVGTGMGGLTVFSDGVQALIEKGHRKITPFFIPYAITNMGSALLAIDLGFMGPNYSISTA 218
VG S L+ + +I + + ++ GP+ ++ TA
Sbjct: 117 FVG-------ASSSDYLELLARDPDEIDAYAATGTSRAFLANRISYFFDLRGPSLTVDTA 169
Query: 219 CATSNYCFYAAANHIRRGEADLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPW 278
C++S + A +R GE DL L GG + P GF LS P RP+
Sbjct: 170 CSSSLVALHLACQSLRSGECDLALVGGVNLILSPDMFVGFSKAGMLS-----PDGRCRPF 224
Query: 279 DKDRDGFVMGEGAGVLVMESLEHAMKRGAPIIAEYLGGAVNCDAY--HMTDPRADGLGVS 336
D D DG+V GEG GV+V++ L A++ G I A G AVN D +T P + +
Sbjct: 225 DADADGYVRGEGVGVVVLKRLSDALRDGDRIYAVIRGSAVNQDGRTKGITAPSGEAQ--A 282
Query: 337 SCIESSLEDAGVSPEEVNYINAHATSTLAGDLAEINAIKKVFK----NTTGIKINATKSM 392
+ I + AGV P +++Y+ AH T T GD E+ A+ KVF + I + KS
Sbjct: 283 ALIRRAYARAGVDPSDIDYVEAHGTGTPLGDPIEVEALAKVFGGSRSADQPLLIGSVKSN 342
Query: 393 IGHCLGAAGGLEAIATVKAITTGWLHPSINQFNPEPSVEFD----TVANKKQQHEVNVAI 448
IGH AAG I V A+ G + P+++ P P ++F+ V + +
Sbjct: 343 IGHLEAAAGLAGLIKVVLALEHGVIPPNLHFETPNPKIDFEESPLRVPTEARPWPAPAGP 402
Query: 449 S----NSFGFGGHNS 459
+SFGFGG N+
Sbjct: 403 RRAGVSSFGFGGTNA 417
|
PKSs can be divided into 2 groups, modular type I PKSs consisting of one or more large multifunctional proteins and iterative type II PKSs, complexes of several monofunctional subunits. Length = 421 |
| >gnl|CDD|238428 cd00832, CLF, Chain-length factor (CLF) is a factor required for polyketide chain initiation of aromatic antibiotic-producing polyketide synthases (PKSs) of filamentous bacteria | Back alignment and domain information |
|---|
Score = 184 bits (470), Expect = 8e-54
Identities = 120/413 (29%), Positives = 193/413 (46%), Gaps = 23/413 (5%)
Query: 56 KRVVITGMGLVSVFGNDVDAYYNKLLDGESGITMIDRFDASKFPTRFGGQIRGFSAEGYI 115
+R V+TG+G+V+ G V+ Y+ +LDG SG+ I RFD S +P R G++ F A ++
Sbjct: 1 RRAVVTGIGVVAPNGLGVEEYWKAVLDGRSGLGPITRFDPSGYPARLAGEVPDFDAAEHL 60
Query: 116 DGKNDRRLDDCLRYCIVAGKKALEDADLGADISKKIDKERAGVLVGTGMGGLTVFSDGVQ 175
G+ + D R + A AL DA + + GV+ + GG +Q
Sbjct: 61 PGRLLPQTDRMTRLALAAADWALADAGVDPA---ALPPYDMGVVTASAAGGFEFGQRELQ 117
Query: 176 ALIEKGHRKITPF-----FIPYAITNMGSALLAIDLGFMGPNYSISTACATSNYCFYAAA 230
L KG R ++ + F YA+ + ++I G GP+ + A A
Sbjct: 118 KLWSKGPRHVSAYQSFAWF--YAVN---TGQISIRHGMRGPSGVVVAEQAGGLDALAQAR 172
Query: 231 NHIRRGEADLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWDKDRDGFVMGEG 290
+RRG L+++GG ++A+ P G ++ LS +DDP A P+D G+V GEG
Sbjct: 173 RLVRRG-TPLVVSGGVDSALCPWGWVAQLSSGRLS-TSDDPARAYLPFDAAAAGYVPGEG 230
Query: 291 AGVLVMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGL--GVSSCIESSLEDAGV 348
+LV+E A +RGA + E G A P G G++ I +L DAG+
Sbjct: 231 GAILVLEDAAAARERGARVYGEIAGYAAT-----FDPPPGSGRPPGLARAIRLALADAGL 285
Query: 349 SPEEVNYINAHATSTLAGDLAEINAIKKVFKNTTGIKINATKSMIGHCLGAAGGLEAIAT 408
+PE+V+ + A A D AE A+ VF G+ + A K+M G L+
Sbjct: 286 TPEDVDVVFADAAGVPELDRAEAAALAAVF-GPRGVPVTAPKTMTGRLYAGGAPLDVATA 344
Query: 409 VKAITTGWLHPSINQFNPEPSVEFDTVANKKQQHEVNVAISNSFGFGGHNSVV 461
+ A+ G + P++N + P+ D V + + + A+ + G GG NS +
Sbjct: 345 LLALRDGVIPPTVNVTDVPPAYGLDLVTGRPRPAALRTALVLARGRGGFNSAL 397
|
CLFs have been shown to have decarboxylase activity towards malonyl-acyl carrier protein (ACP). CLFs are similar to other elongation ketosynthase domains, but their active site cysteine is replaced by a conserved glutamine. Length = 399 |
| >gnl|CDD|238421 cd00825, decarbox_cond_enzymes, decarboxylating condensing enzymes; Family of enzymes that catalyze the formation of a new carbon-carbon bond by a decarboxylating Claisen-like condensation reaction | Back alignment and domain information |
|---|
Score = 170 bits (433), Expect = 4e-49
Identities = 105/335 (31%), Positives = 162/335 (48%), Gaps = 16/335 (4%)
Query: 128 RYCIVAGKKALEDADLGADISKKIDKERAGVLVGTGMGGLTVFSDGVQALIEKGHRKITP 187
A ++A+ DA L + K GV+VGTG G G A+ G +T
Sbjct: 13 ILGFEAAERAIADAGLSREYQKN---PIVGVVVGTGGGSPRFQVFGADAMRAVGPYVVTK 69
Query: 188 FFIPYAITNMGSALLAIDLGFMGPNYSISTACATSNYCFYAAANHIRRGEADLMLAGGTE 247
P A S +A LG GP Y +S ACA S + AA+ ++ G+ D++LAGG+E
Sbjct: 70 AMFPGA-----SGQIATPLGIHGPAYDVSAACAGSLHALSLAADAVQNGKQDIVLAGGSE 124
Query: 248 AAIIPIGLGGFVACRALSQRNDDPQTASRPWDKDRDGFVMGEGAGVLVMESLEHAMKRGA 307
P+ + P+ ASR +D DGFV G+GAG LV+E LEHA+ RGA
Sbjct: 125 ELAAPMDCEFDAMGALST-----PEKASRTFDAAADGFVFGDGAGALVVEELEHALARGA 179
Query: 308 PIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAGVSPEEVNYINAHATSTLAGD 367
I AE +G A D M G++ + +L AG++ +++Y+ AH T T GD
Sbjct: 180 HIYAEIVGTAATIDGAGMGAFAPSAEGLARAAKEALAVAGLTVWDIDYLVAHGTGTPIGD 239
Query: 368 LAEINAIKKVFKNTTGIKINATKSMIGHCLGAAGGLEAIATVKAITTGWLHPSINQFNPE 427
+ E+ ++ F + + ++ATK+M G+ AA L V + G++ PSI+ +
Sbjct: 240 VKELKLLRSEFGDKS-PAVSATKAMTGNLSSAAVVLAVDEAVLMLEHGFIPPSIHIEELD 298
Query: 428 PSVEFDTVANKKQQHEVNVAISNSFGFGGHNSVVA 462
+ + + E+ A+ N FG GG N+ +
Sbjct: 299 EAG--LNIVTETTPRELRTALLNGFGLGGTNATLV 331
|
Members are involved in the synthesis of fatty acids and polyketides, a diverse group of natural products. Both pathways are an iterative series of additions of small carbon units, usually acetate, to a nascent acyl group. There are 2 classes of decarboxylating condensing enzymes, which can be distinguished by sequence similarity, type of active site residues and type of primer units (acetyl CoA or acyl carrier protein (ACP) linked units). Length = 332 |
| >gnl|CDD|236398 PRK09185, PRK09185, 3-oxoacyl-(acyl carrier protein) synthase I; Reviewed | Back alignment and domain information |
|---|
Score = 167 bits (426), Expect = 2e-47
Identities = 99/318 (31%), Positives = 145/318 (45%), Gaps = 42/318 (13%)
Query: 154 ERAGVLVGTGMGGLTVFSDGVQALIEKGHRKITPFFIP----YAITNMGSA--LLAIDLG 207
+R GV++GT G+ +G A R +P YA +GS L LG
Sbjct: 95 DRIGVVLGTSTSGI---LEGELAY---RRRDPAHGALPADYHYAQQELGSLADFLRAYLG 148
Query: 208 FMGPNYSISTACATSNYCFYAAANHIRRGEADLMLAGG-------TEAAIIPIGLGGFVA 260
GP Y+ISTAC++S F +A + G D + GG T L GF +
Sbjct: 149 LSGPAYTISTACSSSAKVFASARRLLEAGLCDAAIVGGVDSLCRLT--------LNGFNS 200
Query: 261 CRALSQRNDDPQTASRPWDKDRDGFVMGEGAGVLVMESLEHAMKRGAPIIAEYLGGAVNC 320
+LS RP+ +RDG +GE A ++E R LG +
Sbjct: 201 LESLSP------QPCRPFSANRDGINIGEAAAFFLLE-------REDDAAVALLGVGESS 247
Query: 321 DAYHMTDPRADGLGVSSCIESSLEDAGVSPEEVNYINAHATSTLAGDLAEINAIKKVFKN 380
DA+HM+ P +GLG ++ +L DAG++P ++ YIN H T+T D E A+ VF +
Sbjct: 248 DAHHMSAPHPEGLGAILAMQQALADAGLAPADIGYINLHGTATPLNDAMESRAVAAVFGD 307
Query: 381 TTGIKINATKSMIGHCLGAAGGLEAIATVKAITTGWLHPSINQFNPEPSVEFDTVANKKQ 440
++TK + GH LGAAG +EA A+ G N P+P++ + Q
Sbjct: 308 GV--PCSSTKGLTGHTLGAAGAVEAAICWLALRHGLPPHGWNTGQPDPALPPLYLVENAQ 365
Query: 441 QHEVNVAISNSFGFGGHN 458
+ +SNSF FGG+N
Sbjct: 366 ALAIRYVLSNSFAFGGNN 383
|
Length = 392 |
| >gnl|CDD|225858 COG3321, COG3321, Polyketide synthase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 157 bits (399), Expect = 2e-41
Identities = 118/429 (27%), Positives = 180/429 (41%), Gaps = 67/429 (15%)
Query: 71 NDVDAYYNKLLDGESGITMI--DRFDASKF-------PTRFGGQIRGFSAEGYIDGKND- 120
+ + +++ L +G IT + DR+D + P + + GF +D +D
Sbjct: 19 DSPEEFWDLLKEGRDEITEVPADRWDVDAYYDPDPTVPGKSYSRWGGF-----LDDVDDF 73
Query: 121 ------------RRLDDCLRYCIVAGKKALEDADLGADISKKIDKERAGVLVGTGMGGLT 168
+D R + +ALEDA + D + GV G +
Sbjct: 74 DALFFGISPREAEAMDPQQRLLLEVAWEALEDAGIYPD---SLRGSATGVFAGASV---- 126
Query: 169 VFSDGVQALIEKGHRKITPFFIPYAITNMGSALLAIDLGFMGPNYSISTACATSNYCFYA 228
L+ + I +++ + ++ LG GP+ ++ TAC++S +
Sbjct: 127 ---ADYLLLLLADDEAEPEYAITGNSSSVAAGRISYVLGLSGPSVTVDTACSSSLVAVHL 183
Query: 229 AANHIRRGEADLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWDKDRDGFVMG 288
A +R GE DL LAGG + P F A LS P + +D D DG+V G
Sbjct: 184 ACQSLRLGECDLALAGGVNLVLSPESSYLFSAGGMLS-----PDGRCKAFDADADGYVRG 238
Query: 289 EGAGVLVMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSC------IESS 342
EGAGV+V++ L A + G I A G AVN D R++GL + I +
Sbjct: 239 EGAGVVVLKRLSDAERDGDRIYAVIRGSAVNQDG------RSNGLTAPNLEAQADVIREA 292
Query: 343 LEDAGVSPEEVNYINAHATSTLAGDLAEINAIKKVFKNTTG---IKINATKSMIGHCLGA 399
L DAG+ P V Y+ AH T T GD E NA+ V+ I + KS IGH A
Sbjct: 293 LADAGIDPATVQYVEAHGTGTPLGDPIEANALGAVYGEGAPAQPCAIGSVKSNIGHLEAA 352
Query: 400 AGGLEAIATVKAITTGWLHPSINQFNPEPSVEFDTVANKKQQHE---------VNVAISN 450
AG I T A+ G++ P+++ P P ++FD+ +S
Sbjct: 353 AGIAGLIKTALALKHGYIPPTLHFDTPNPEIDFDSSPFVVPTEATPWPTGGGPRRAGVS- 411
Query: 451 SFGFGGHNS 459
SFGFGG N+
Sbjct: 412 SFGFGGTNA 420
|
Length = 1061 |
| >gnl|CDD|217236 pfam02801, Ketoacyl-synt_C, Beta-ketoacyl synthase, C-terminal domain | Back alignment and domain information |
|---|
Score = 134 bits (341), Expect = 3e-38
Identities = 43/116 (37%), Positives = 60/116 (51%), Gaps = 4/116 (3%)
Query: 311 AEYLGGAVNCD-AYHMTDPRADGLGVSSCIESSLEDAGVSPEEVNYINAHATSTLAGDLA 369
A G AVN D A H +G + I ++L DAG+ PE+V+Y+ AH T T GD
Sbjct: 2 AVIRGSAVNQDGAAHNGLTAPNGPAQARAIRAALADAGLDPEDVDYVEAHGTGTPLGDPI 61
Query: 370 EINAIKKVFKN---TTGIKINATKSMIGHCLGAAGGLEAIATVKAITTGWLHPSIN 422
E A+K VF + + + + KS IGH AAG I V A+ G + P++N
Sbjct: 62 EAEALKAVFGPGRDSQPLPVGSVKSNIGHLEAAAGVAGLIKAVLALRHGVIPPTLN 117
|
The structure of beta-ketoacyl synthase is similar to that of the thiolase family (pfam00108) and also chalcone synthase. The active site of beta-ketoacyl synthase is located between the N and C-terminal domains. Length = 119 |
| >gnl|CDD|238201 cd00327, cond_enzymes, Condensing enzymes; Family of enzymes that catalyze a (decarboxylating or non-decarboxylating) Claisen-like condensation reaction | Back alignment and domain information |
|---|
Score = 102 bits (257), Expect = 6e-25
Identities = 65/212 (30%), Positives = 92/212 (43%), Gaps = 41/212 (19%)
Query: 202 LAIDLGFM-GPNYSISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAIIPIGLGGFVA 260
LA LG GP YS++ ACAT A ++ G+AD++LAGG+E
Sbjct: 50 LAYHLGISGGPAYSVNQACATGLTALALAVQQVQNGKADIVLAGGSEE------------ 97
Query: 261 CRALSQRNDDPQTASRPWDKDRDGFVMGEGAGVLVMESLEHAMKRGAPIIAEYLGGAVNC 320
FV G+GA V+ES EHA++RGA AE + A
Sbjct: 98 ------------------------FVFGDGAAAAVVESEEHALRRGAHPQAEIVSTAATF 133
Query: 321 D-AYHMTDPRADGLGVSSCIESSLEDAGVSPEEVNYINAHATSTLAGDLAEINAIKKVFK 379
D A + +GL + +LE AG++P +++Y+ AH T T GD E+
Sbjct: 134 DGASMVPAVSGEGL--ARAARKALEGAGLTPSDIDYVEAHGTGTPIGDAVELALGLDPD- 190
Query: 380 NTTGIKINATKSMIGHCLGAAGGLEAIATVKA 411
++AT M GH LGAAG +
Sbjct: 191 GVRSPAVSATLIMTGHPLGAAGLAILDELLLM 222
|
Members are share strong structural similarity, and are involved in the synthesis and degradation of fatty acids, and the production of polyketides, a diverse group of natural products. Length = 254 |
| >gnl|CDD|234022 TIGR02813, omega_3_PfaA, polyketide-type polyunsaturated fatty acid synthase PfaA | Back alignment and domain information |
|---|
Score = 102 bits (254), Expect = 1e-22
Identities = 102/378 (26%), Positives = 156/378 (41%), Gaps = 51/378 (13%)
Query: 131 IVAGKKALEDADLGADISKKIDKERAGVLVGTGMG-----GLT----------VF-SDGV 174
+V K+ L DA L D+++ G+ +G G G L VF + GV
Sbjct: 98 LVVAKEVLNDAGLPDGY----DRDKIGITLGVGGGQKQSSSLNARLQYPVLKKVFKASGV 153
Query: 175 -----QALIEKGHRKITPF---FIPYAITNMGSALLAIDLGFMGPNYSISTACATSNYCF 226
+ LI+K + + P ++ N+ S +A G N + ACA S
Sbjct: 154 EDEDSEMLIKKFQDQYIHWEENSFPGSLGNVISGRIANRFDLGGMNCVVDAACAGSLAAI 213
Query: 227 YAAANHIRRGEADLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWDKDRDGFV 286
A + + G +++M+ GG P F A + D +P+D D G +
Sbjct: 214 RMALSELLEGRSEMMITGGVCTDNSPFMYMSFSKTPAFTTNED-----IQPFDIDSKGMM 268
Query: 287 MGEGAGVLVMESLEHAMKRGAPIIAEYLGGAVNCDAYHMT--DPRADGLGVSSCIESSLE 344
+GEG G++ ++ LE A + G I A G + D + PR +G + ++ + +
Sbjct: 269 IGEGIGMMALKRLEDAERDGDRIYAVIKGVGASSDGKFKSIYAPRPEGQ--AKALKRAYD 326
Query: 345 DAGVSPEEVNYINAHATSTLAGDLAEINAIKKVFKNTTG----IKINATKSMIGHCLGAA 400
DAG +P I AH T T AGD+AE + VF I + + KS IGH A
Sbjct: 327 DAGFAPHTCGLIEAHGTGTAAGDVAEFGGLVSVFSQDNDQKQHIALGSVKSQIGHTKSTA 386
Query: 401 GGLEAIATVKAITTGWLHPSINQFNPEPSVEFD-------TVANKKQQHEVNV---AISN 450
G I V A+ L P+IN P P ++ + T Q E A +
Sbjct: 387 GTAGMIKAVLALHHKVLPPTINVDQPNPKLDIENSPFYLNTETRPWMQREDGTPRRAGIS 446
Query: 451 SFGFGGHNSVVAFSAFKP 468
SFGFGG N + + P
Sbjct: 447 SFGFGGTNFHMVLEEYSP 464
|
Members of the seed for this alignment are involved in omega-3 polyunsaturated fatty acid biosynthesis, such as the protein PfaA from the eicosapentaenoic acid biosynthesis operon in Photobacterium profundum strain SS9. PfaA is encoded together with PfaB, PfaC, and PfaD, and the functions of the individual polypeptides have not yet been described. More distant homologs of PfaA, also included with the reach of this model, appear to be involved in polyketide-like biosynthetic mechanisms of polyunsaturated fatty acid biosynthesis, an alternative to the more familiar iterated mechanism of chain extension and desaturation, and in most cases are encoded near genes for homologs of PfaB, PfaC, and/or PfaD. Length = 2582 |
| >gnl|CDD|214836 smart00825, PKS_KS, Beta-ketoacyl synthase | Back alignment and domain information |
|---|
Score = 82.8 bits (206), Expect = 1e-17
Identities = 42/117 (35%), Positives = 60/117 (51%), Gaps = 7/117 (5%)
Query: 207 GFMGPNYSIS--TACATSNYCFYAAANHIRRGEADLMLAGGTEAAIIPIGLGGFVACRAL 264
G +YS++ TAC++S + A +R GE D+ LAGG + P G L
Sbjct: 83 GVSSSDYSVTVDTACSSSLVALHLACQSLRSGECDMALAGGVNLILSPDTFVGLSRAGML 142
Query: 265 SQRNDDPQTASRPWDKDRDGFVMGEGAGVLVMESLEHAMKRGAPIIAEYLGGAVNCD 321
S P + +D DG+V GEG GV+V++ L A++ G PI+A G AVN D
Sbjct: 143 S-----PDGRCKTFDASADGYVRGEGVGVVVLKRLSDALRDGDPILAVIRGSAVNQD 194
|
The structure of beta-ketoacyl synthase is similar to that of the thiolase family and also chalcone synthase. The active site of beta-ketoacyl synthase is located between the N and C-terminal domains. Length = 298 |
| >gnl|CDD|235819 PRK06519, PRK06519, 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed | Back alignment and domain information |
|---|
Score = 47.3 bits (113), Expect = 1e-05
Identities = 45/180 (25%), Positives = 68/180 (37%), Gaps = 30/180 (16%)
Query: 229 AANHIRRGEADLMLAGGTEAA-----IIPIGLGGFVA---CRALSQRNDDPQTASRPWDK 280
A I G++D L GG A ++ LGG + + R +
Sbjct: 185 AFARIASGQSDHALVGGAYNAERPDMLLLYELGGLLLKGGWAPVWSRGGE---------- 234
Query: 281 DRDGFVMGEGAGVLVMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIE 340
D GF++G G LV+ES EHA RGA A + G + A RA G + + +E
Sbjct: 235 DGGGFILGSGGAFLVLESREHAEARGARPYAR-ISGVESDRA-----RRAPG-DLEASLE 287
Query: 341 SSLEDAGVSPEEVNYINAHATSTLAGDLAEINAIKKVFKNTTGIKINATKSMIGHCLGAA 400
L+ AG I+ AT E A++ + ++ GH + A
Sbjct: 288 RLLKPAGGLAAPTAVISG-ATGAHPATAEEKAALEAALA----GPVRGIGTLFGHTMEAQ 342
|
Length = 398 |
| >gnl|CDD|214836 smart00825, PKS_KS, Beta-ketoacyl synthase | Back alignment and domain information |
|---|
Score = 43.1 bits (103), Expect = 2e-04
Identities = 25/80 (31%), Positives = 36/80 (45%), Gaps = 14/80 (17%)
Query: 390 KSMIGHCLGAAG--GLEAIATVKAITTGWLHPSINQFNPEPSVEFDT----VANKKQQHE 443
KS IGH AAG GL I V A+ G + P+++ P P ++ + V +
Sbjct: 215 KSNIGHLEAAAGVAGL--IKVVLALKHGVIPPTLHFETPNPHIDLEESPLRVPTELTPWP 272
Query: 444 VN-----VAISNSFGFGGHN 458
+ +SFGFGG N
Sbjct: 273 PPGRPRRAGV-SSFGFGGTN 291
|
The structure of beta-ketoacyl synthase is similar to that of the thiolase family and also chalcone synthase. The active site of beta-ketoacyl synthase is located between the N and C-terminal domains. Length = 298 |
| >gnl|CDD|181597 PRK08963, fadI, 3-ketoacyl-CoA thiolase; Reviewed | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 0.003
Identities = 21/47 (44%), Positives = 30/47 (63%), Gaps = 7/47 (14%)
Query: 213 YSISTACATSNYCFYAAAN---HIRRGEADLMLAGGTE-AAIIPIGL 255
YS+S ACATS F A AN I G D+ +AGG + ++++PIG+
Sbjct: 85 YSVSRACATS---FQAVANVAESIMAGTIDIGIAGGADSSSVLPIGV 128
|
Length = 428 |
| >gnl|CDD|238425 cd00829, SCP-x_thiolase, Thiolase domain associated with sterol carrier protein (SCP)-x isoform and related proteins; SCP-2 has multiple roles in intracellular lipid circulation and metabolism | Back alignment and domain information |
|---|
Score = 39.2 bits (92), Expect = 0.003
Identities = 27/116 (23%), Positives = 38/116 (32%), Gaps = 32/116 (27%)
Query: 133 AGKKALEDADLGADISKKIDKERAGVLVGTGMGGLTVFSDGVQALIEKGHRKITPFFIPY 192
A + AL+DA L ID V+VG GG
Sbjct: 23 AARAALDDAGLEPA---DID----AVVVGNAAGGRFQ----------------------- 52
Query: 193 AITNMGSALLAIDLGFMGPNYSISTACATSNYCFYAAANHIRRGEADLMLAGGTEA 248
+ G+ + P + A A+ + AAA I G AD++L G E
Sbjct: 53 --SFPGALIAEYLGLLGKPATRVEAAGASGSAAVRAAAAAIASGLADVVLVVGAEK 106
|
The N-terminal presequence in the SCP-x isoform represents a peroxisomal 3-ketacyl-Coa thiolase specific for branched-chain acyl CoAs, which is proteolytically cleaved from the sterol carrier protein. Length = 375 |
| >gnl|CDD|215161 PLN02287, PLN02287, 3-ketoacyl-CoA thiolase | Back alignment and domain information |
|---|
Score = 39.4 bits (92), Expect = 0.003
Identities = 31/123 (25%), Positives = 54/123 (43%), Gaps = 29/123 (23%)
Query: 289 EGAGVLVMESLEHAMKRGAPIIAEYLG-GAVNCDAYHMTDPRADGLGVSSCIESSLEDAG 347
+GAG +++ AM++G PI+ + AV DP G+G + I ++++ AG
Sbjct: 292 DGAGAVLLMKRSVAMQKGLPILGVFRSFAAVGV------DPAVMGIGPAVAIPAAVKAAG 345
Query: 348 VSPEEVNYINAHATSTLAGDLAEIN---------AIKKVFKNTTGIKINATKSMIGHCLG 398
+ +++ DL EIN KK+ + + +N +GH LG
Sbjct: 346 LELDDI-------------DLFEINEAFASQFVYCCKKLGLDPEKVNVNGGAIALGHPLG 392
Query: 399 AAG 401
A G
Sbjct: 393 ATG 395
|
Length = 452 |
| >gnl|CDD|223261 COG0183, PaaJ, Acetyl-CoA acetyltransferase [Lipid metabolism] | Back alignment and domain information |
|---|
Score = 39.2 bits (92), Expect = 0.004
Identities = 20/49 (40%), Positives = 26/49 (53%)
Query: 199 SALLAIDLGFMGPNYSISTACATSNYCFYAAANHIRRGEADLMLAGGTE 247
A LA L P +++ ACA+ AA I GEAD++LAGG E
Sbjct: 72 QAALAAGLPGSVPAVTVNRACASGLAAVRLAAQAIASGEADVVLAGGVE 120
|
Length = 392 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 468 | |||
| KOG1394 | 440 | consensus 3-oxoacyl-(acyl-carrier-protein) synthas | 100.0 | |
| PLN02787 | 540 | 3-oxoacyl-[acyl-carrier-protein] synthase II | 100.0 | |
| PRK08722 | 414 | 3-oxoacyl-(acyl carrier protein) synthase II; Revi | 100.0 | |
| COG0304 | 412 | FabB 3-oxoacyl-(acyl-carrier-protein) synthase [Li | 100.0 | |
| PRK06333 | 424 | 3-oxoacyl-(acyl carrier protein) synthase II; Revi | 100.0 | |
| PRK07910 | 418 | 3-oxoacyl-(acyl carrier protein) synthase II; Revi | 100.0 | |
| cd00832 | 399 | CLF Chain-length factor (CLF) is a factor required | 100.0 | |
| PRK08439 | 406 | 3-oxoacyl-(acyl carrier protein) synthase II; Revi | 100.0 | |
| PRK09116 | 405 | 3-oxoacyl-(acyl carrier protein) synthase II; Revi | 100.0 | |
| PRK07967 | 406 | 3-oxoacyl-(acyl carrier protein) synthase I; Revie | 100.0 | |
| PRK07314 | 411 | 3-oxoacyl-(acyl carrier protein) synthase II; Revi | 100.0 | |
| PLN02836 | 437 | 3-oxoacyl-[acyl-carrier-protein] synthase | 100.0 | |
| TIGR03150 | 407 | fabF beta-ketoacyl-acyl-carrier-protein synthase I | 100.0 | |
| TIGR02813 | 2582 | omega_3_PfaA polyketide-type polyunsaturated fatty | 100.0 | |
| PTZ00050 | 421 | 3-oxoacyl-acyl carrier protein synthase; Provision | 100.0 | |
| cd00834 | 406 | KAS_I_II Beta-ketoacyl-acyl carrier protein (ACP) | 100.0 | |
| PRK07103 | 410 | polyketide beta-ketoacyl:acyl carrier protein synt | 100.0 | |
| COG3321 | 1061 | Polyketide synthase modules and related proteins [ | 100.0 | |
| cd00828 | 407 | elong_cond_enzymes "elongating" condensing enzymes | 100.0 | |
| PRK05952 | 381 | 3-oxoacyl-(acyl carrier protein) synthase II; Revi | 100.0 | |
| PRK06501 | 425 | 3-oxoacyl-(acyl carrier protein) synthase II; Revi | 100.0 | |
| PRK14691 | 342 | 3-oxoacyl-(acyl carrier protein) synthase II; Prov | 100.0 | |
| PRK09185 | 392 | 3-oxoacyl-(acyl carrier protein) synthase I; Revie | 100.0 | |
| smart00825 | 424 | PKS_KS Beta-ketoacyl synthase. The structure of be | 100.0 | |
| PRK06519 | 398 | 3-oxoacyl-(acyl carrier protein) synthase II; Revi | 100.0 | |
| cd00833 | 421 | PKS polyketide synthases (PKSs) polymerize simple | 100.0 | |
| KOG1202 | 2376 | consensus Animal-type fatty acid synthase and rela | 100.0 | |
| cd00825 | 332 | decarbox_cond_enzymes decarboxylating condensing e | 100.0 | |
| PRK06147 | 348 | 3-oxoacyl-(acyl carrier protein) synthase; Validat | 100.0 | |
| PF00109 | 254 | ketoacyl-synt: Beta-ketoacyl synthase, N-terminal | 100.0 | |
| cd00327 | 254 | cond_enzymes Condensing enzymes; Family of enzymes | 100.0 | |
| PRK06633 | 392 | acetyl-CoA acetyltransferase; Provisional | 99.96 | |
| PRK05656 | 393 | acetyl-CoA acetyltransferase; Provisional | 99.95 | |
| PRK09051 | 394 | beta-ketothiolase; Provisional | 99.95 | |
| PRK06064 | 389 | acetyl-CoA acetyltransferase; Provisional | 99.95 | |
| PRK07516 | 389 | acetyl-CoA acetyltransferase; Provisional | 99.95 | |
| cd00751 | 386 | thiolase Thiolase are ubiquitous enzymes that cata | 99.95 | |
| PRK09052 | 399 | acetyl-CoA acetyltransferase; Provisional | 99.95 | |
| PRK08242 | 402 | acetyl-CoA acetyltransferase; Validated | 99.94 | |
| PRK06954 | 397 | acetyl-CoA acetyltransferase; Provisional | 99.94 | |
| PRK13359 | 400 | beta-ketoadipyl CoA thiolase; Provisional | 99.94 | |
| PRK06205 | 404 | acetyl-CoA acetyltransferase; Provisional | 99.94 | |
| TIGR01930 | 386 | AcCoA-C-Actrans acetyl-CoA acetyltransferases. Thi | 99.94 | |
| PRK12578 | 385 | acetyl-CoA acetyltransferase; Provisional | 99.94 | |
| PRK07850 | 387 | acetyl-CoA acetyltransferase; Provisional | 99.94 | |
| PRK05790 | 393 | putative acyltransferase; Provisional | 99.93 | |
| PRK08235 | 393 | acetyl-CoA acetyltransferase; Provisional | 99.93 | |
| PRK06445 | 394 | acetyl-CoA acetyltransferase; Provisional | 99.93 | |
| PRK07108 | 392 | acetyl-CoA acetyltransferase; Provisional | 99.93 | |
| PRK07661 | 391 | acetyl-CoA acetyltransferase; Provisional | 99.93 | |
| PLN02287 | 452 | 3-ketoacyl-CoA thiolase | 99.93 | |
| PF02801 | 119 | Ketoacyl-synt_C: Beta-ketoacyl synthase, C-termina | 99.93 | |
| PRK08256 | 391 | lipid-transfer protein; Provisional | 99.93 | |
| PRK08131 | 401 | acetyl-CoA acetyltransferase; Provisional | 99.93 | |
| PRK09050 | 401 | beta-ketoadipyl CoA thiolase; Validated | 99.93 | |
| PRK07851 | 406 | acetyl-CoA acetyltransferase; Provisional | 99.93 | |
| PRK06504 | 390 | acetyl-CoA acetyltransferase; Provisional | 99.93 | |
| TIGR02430 | 400 | pcaF beta-ketoadipyl CoA thiolase. Members of this | 99.92 | |
| PTZ00455 | 438 | 3-ketoacyl-CoA thiolase; Provisional | 99.92 | |
| PRK06158 | 384 | thiolase; Provisional | 99.92 | |
| cd00829 | 375 | SCP-x_thiolase Thiolase domain associated with ste | 99.92 | |
| PRK06366 | 388 | acetyl-CoA acetyltransferase; Provisional | 99.92 | |
| PRK08963 | 428 | fadI 3-ketoacyl-CoA thiolase; Reviewed | 99.92 | |
| PLN02644 | 394 | acetyl-CoA C-acetyltransferase | 99.92 | |
| PRK06059 | 399 | lipid-transfer protein; Provisional | 99.92 | |
| PRK08947 | 387 | fadA 3-ketoacyl-CoA thiolase; Reviewed | 99.92 | |
| PRK08170 | 426 | acetyl-CoA acetyltransferase; Provisional | 99.92 | |
| PRK06157 | 398 | acetyl-CoA acetyltransferase; Validated | 99.92 | |
| PRK08313 | 386 | acetyl-CoA acetyltransferase; Provisional | 99.91 | |
| TIGR02445 | 385 | fadA fatty oxidation complex, beta subunit FadA. T | 99.91 | |
| PRK06065 | 392 | acetyl-CoA acetyltransferase; Provisional | 99.91 | |
| PRK06365 | 430 | acetyl-CoA acetyltransferase; Provisional | 99.91 | |
| PRK07801 | 382 | acetyl-CoA acetyltransferase; Provisional | 99.91 | |
| PRK08142 | 388 | acetyl-CoA acetyltransferase; Provisional | 99.91 | |
| PRK09268 | 427 | acetyl-CoA acetyltransferase; Provisional | 99.91 | |
| PRK06289 | 403 | acetyl-CoA acetyltransferase; Provisional | 99.9 | |
| cd00826 | 393 | nondecarbox_cond_enzymes nondecarboxylating conden | 99.9 | |
| PRK06066 | 385 | acetyl-CoA acetyltransferase; Provisional | 99.89 | |
| PRK06025 | 417 | acetyl-CoA acetyltransferase; Provisional | 99.89 | |
| TIGR02446 | 430 | FadI fatty oxidation complex, beta subunit FadI. T | 99.89 | |
| PRK06690 | 361 | acetyl-CoA acetyltransferase; Provisional | 99.88 | |
| PRK07515 | 372 | 3-oxoacyl-(acyl carrier protein) synthase III; Rev | 99.88 | |
| PRK07855 | 386 | lipid-transfer protein; Provisional | 99.85 | |
| KOG1406 | 408 | consensus Peroxisomal 3-ketoacyl-CoA-thiolase P-44 | 99.85 | |
| KOG1390 | 396 | consensus Acetyl-CoA acetyltransferase [Lipid tran | 99.84 | |
| PRK07204 | 329 | 3-oxoacyl-(acyl carrier protein) synthase III; Rev | 99.83 | |
| PRK07937 | 352 | lipid-transfer protein; Provisional | 99.82 | |
| PRK08257 | 498 | acetyl-CoA acetyltransferase; Validated | 99.82 | |
| PRK09352 | 319 | 3-oxoacyl-(acyl carrier protein) synthase III; Rev | 99.79 | |
| PRK06816 | 378 | 3-oxoacyl-(acyl carrier protein) synthase III; Rev | 99.77 | |
| COG0332 | 323 | FabH 3-oxoacyl-[acyl-carrier-protein] | 99.76 | |
| TIGR00747 | 318 | fabH 3-oxoacyl-(acyl-carrier-protein) synthase III | 99.75 | |
| KOG1391 | 396 | consensus Acetyl-CoA acetyltransferase [Lipid tran | 99.75 | |
| PRK09258 | 338 | 3-oxoacyl-(acyl carrier protein) synthase III; Rev | 99.73 | |
| PRK12879 | 325 | 3-oxoacyl-(acyl carrier protein) synthase III; Rev | 99.73 | |
| cd00830 | 320 | KAS_III Ketoacyl-acyl carrier protein synthase III | 99.72 | |
| KOG1389 | 435 | consensus 3-oxoacyl CoA thiolase [Lipid transport | 99.71 | |
| PLN02326 | 379 | 3-oxoacyl-[acyl-carrier-protein] synthase III | 99.7 | |
| CHL00203 | 326 | fabH 3-oxoacyl-acyl-carrier-protein synthase 3; Pr | 99.68 | |
| PRK06840 | 339 | hypothetical protein; Validated | 99.66 | |
| TIGR00748 | 345 | HMG_CoA_syn_Arc hydroxymethylglutaryl-CoA synthase | 99.62 | |
| PRK05963 | 326 | 3-oxoacyl-(acyl carrier protein) synthase II; Revi | 99.6 | |
| PRK04262 | 347 | hypothetical protein; Provisional | 99.6 | |
| cd00827 | 324 | init_cond_enzymes "initiating" condensing enzymes | 99.59 | |
| COG0183 | 392 | PaaJ Acetyl-CoA acetyltransferase [Lipid metabolis | 99.58 | |
| PLN03172 | 393 | chalcone synthase family protein; Provisional | 99.53 | |
| PRK12880 | 353 | 3-oxoacyl-(acyl carrier protein) synthase III; Rev | 99.52 | |
| cd00831 | 361 | CHS_like Chalcone and stilbene synthases; plant-sp | 99.48 | |
| PLN03170 | 401 | chalcone synthase; Provisional | 99.47 | |
| KOG1392 | 465 | consensus Acetyl-CoA acetyltransferase [Lipid tran | 99.45 | |
| PLN03169 | 391 | chalcone synthase family protein; Provisional | 99.45 | |
| PLN03171 | 399 | chalcone synthase-like protein; Provisional | 99.44 | |
| TIGR02845 | 327 | spore_V_AD stage V sporulation protein AD. Bacillu | 99.39 | |
| PLN03173 | 391 | chalcone synthase; Provisional | 99.38 | |
| PLN03168 | 389 | chalcone synthase; Provisional | 99.35 | |
| PF02803 | 123 | Thiolase_C: Thiolase, C-terminal domain; InterPro: | 99.32 | |
| TIGR01835 | 379 | HMG-CoA-S_prok 3-hydroxy-3-methylglutaryl CoA synt | 99.3 | |
| PRK08304 | 337 | stage V sporulation protein AD; Validated | 99.23 | |
| COG3425 | 377 | PksG 3-hydroxy-3-methylglutaryl CoA synthase [Lipi | 99.23 | |
| PF00108 | 264 | Thiolase_N: Thiolase, N-terminal domain; InterPro: | 99.22 | |
| PLN02854 | 521 | 3-ketoacyl-CoA synthase | 99.2 | |
| PLN02377 | 502 | 3-ketoacyl-CoA synthase | 99.14 | |
| PF13723 | 218 | Ketoacyl-synt_2: Beta-ketoacyl synthase, N-termina | 99.1 | |
| PLN02577 | 459 | hydroxymethylglutaryl-CoA synthase | 99.09 | |
| PRK12404 | 334 | stage V sporulation protein AD; Provisional | 99.05 | |
| PLN02932 | 478 | 3-ketoacyl-CoA synthase | 98.86 | |
| PLN02192 | 511 | 3-ketoacyl-CoA synthase | 98.78 | |
| TIGR01833 | 454 | HMG-CoA-S_euk 3-hydroxy-3-methylglutaryl-CoA-synth | 98.75 | |
| COG3424 | 356 | BcsA Predicted naringenin-chalcone synthase [Secon | 98.66 | |
| PLN00415 | 466 | 3-ketoacyl-CoA synthase | 98.45 | |
| PF08392 | 290 | FAE1_CUT1_RppA: FAE1/Type III polyketide synthase- | 98.36 | |
| PF08545 | 80 | ACP_syn_III: 3-Oxoacyl-[acyl-carrier-protein (ACP) | 98.2 | |
| PF00195 | 226 | Chal_sti_synt_N: Chalcone and stilbene synthases, | 98.15 | |
| PF07451 | 329 | SpoVAD: Stage V sporulation protein AD (SpoVAD); I | 97.98 | |
| PF01154 | 174 | HMG_CoA_synt_N: Hydroxymethylglutaryl-coenzyme A s | 97.45 | |
| PF08541 | 90 | ACP_syn_III_C: 3-Oxoacyl-[acyl-carrier-protein (AC | 97.05 | |
| KOG1393 | 462 | consensus Hydroxymethylglutaryl-CoA synthase [Lipi | 92.57 | |
| PRK08170 | 426 | acetyl-CoA acetyltransferase; Provisional | 87.24 | |
| PRK12578 | 385 | acetyl-CoA acetyltransferase; Provisional | 86.59 | |
| PRK06065 | 392 | acetyl-CoA acetyltransferase; Provisional | 85.31 | |
| PRK07937 | 352 | lipid-transfer protein; Provisional | 84.1 | |
| PRK05790 | 393 | putative acyltransferase; Provisional | 83.87 | |
| PRK06158 | 384 | thiolase; Provisional | 82.58 | |
| PLN02644 | 394 | acetyl-CoA C-acetyltransferase | 82.36 | |
| TIGR01930 | 386 | AcCoA-C-Actrans acetyl-CoA acetyltransferases. Thi | 80.77 |
| >KOG1394 consensus 3-oxoacyl-(acyl-carrier-protein) synthase (I and II) [Lipid transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-97 Score=681.14 Aligned_cols=413 Identities=52% Similarity=0.825 Sum_probs=396.7
Q ss_pred CCcEEEEeeceeccCCCCHHHHHHHHHcCCCCccccCCCCCCCCCCccccccCCCCCCCCCCccccccCCHHHHHHHHHH
Q 012221 55 KKRVVITGMGLVSVFGNDVDAYYNKLLDGESGITMIDRFDASKFPTRFGGQIRGFSAEGYIDGKNDRRLDDCLRYCIVAG 134 (468)
Q Consensus 55 ~~~V~ItG~g~~~p~g~~~~~~~~~L~~G~~~i~~~~~~~~~~~~~~~~g~v~~~d~~~~i~~~~~~~~d~~~~l~l~a~ 134 (468)
++||||||||+++|+|.+++++|++|.+|+++|+.++.++...+|++++|+|+.|+.+.+++..+.|+|+++.+|++.|+
T Consensus 23 ~rRVVITGmG~VTplG~~v~~~w~~Ll~GesGI~~l~~~d~k~~p~~v~g~Ip~f~~e~~~s~~~~r~ms~~~~~al~aa 102 (440)
T KOG1394|consen 23 MRRVVITGMGAVTPLGNGVHTSWRNLLSGESGISSLEGPDYKSIPFTVAGKIPRFSVEDYVSKGDERRMSKFTKLALTAA 102 (440)
T ss_pred ceeEEEeccceeecCCCChHHHHHHhhccccCcccccccccccCcchheeeccccccccccchhhhhhhhHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCCccccccccccceEEEeecCCCccchHHHHHHHHHhCCCCcCCcCcchhhhhhhHHHHhhhhCCCCccee
Q 012221 135 KKALEDADLGADISKKIDKERAGVLVGTGMGGLTVFSDGVQALIEKGHRKITPFFIPYAITNMGSALLAIDLGFMGPNYS 214 (468)
Q Consensus 135 ~~AL~dAgl~~~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~ia~~lgl~Gp~~~ 214 (468)
++||+|++|.+...++.|..++||.+|+++++++.+.+..+.+.+++.++++|+++|..+.|+.++++++.+||+||+.+
T Consensus 103 ~eAL~da~~~~~~~~e~dk~~~GV~iGtgmg~l~~i~e~a~~~~~~g~rrvsPffVPkil~NM~ag~vsm~~gl~Gpnhs 182 (440)
T KOG1394|consen 103 EEALKDAGLLDVNLSEEDKEKTGVLIGTGMGDLEDIYETAQNLSEKGYRRVSPFFVPKILTNMAAGYVSMKYGLRGPNHS 182 (440)
T ss_pred HHHHHhcCCCCcccchhhhhhhceEeccccccHHHHHHHHHHHHHhcccccCccccchhhcccccchhhhhhcCcCCchh
Confidence 99999999976555677889999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecccChHHHHHHHHHHHHHHhCCCCEEEEEeeccccchhhhhHhhhccccccCCCCCCCCCCCCCCCCCCeeecceeEEE
Q 012221 215 ISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWDKDRDGFVMGEGAGVL 294 (468)
Q Consensus 215 v~~acas~l~Al~~A~~~I~~G~~d~~lvgG~e~~~~p~~~~~~~~~~~l~~~~~~~~~~~rpfd~~~~G~v~gEGaaav 294 (468)
++|+|++|..+|..|++.|+.|++|++|+||+|..++|..+.+|.+++.|++++++|...+||||.+|||||+|||++++
T Consensus 183 vSTACATg~h~igda~n~Ir~GdaDvmlAGgsE~~I~PlslaGF~r~RALSt~nd~P~~aSRPfD~~RdGFVmGEGagvl 262 (440)
T KOG1394|consen 183 VSTACATGNHCIGDAFNFIRLGDADVMLAGGSEACINPLSLAGFSRARALSTRNDNPQKASRPFDKKRDGFVMGEGAGVL 262 (440)
T ss_pred hHhhhhhccchHHHHHHHHHhCccceeeccCcceeecchhhhhHHHHHHhhhcCCCccccCCCCccCCCceeeccceeEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecchhHHHhcCCceEEEEEEEEEcCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCcCEEEEccCCCccCCHHHHHHH
Q 012221 295 VMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAGVSPEEVNYINAHATSTLAGDLAEINAI 374 (468)
Q Consensus 295 vL~~~~~A~~~g~~i~a~i~g~~~~~d~~~~~~~~~~~~~~~~~i~~al~~Agl~~~dId~v~~h~~gt~~~D~~E~~al 374 (468)
|||++|+|++||++|||++.||+.++|.+|++.|+|+|.+...+|+++|++|||.|+|||||++|+|+|+.||..|.+|+
T Consensus 263 vlEelEHA~~RgA~I~AE~lGygls~Da~HiT~P~~dG~Ga~~am~raL~~Agl~pe~i~YvNAHATST~~GD~aE~~Ai 342 (440)
T KOG1394|consen 263 VLEELEHAKKRGAPIYAEVLGYGLSSDAYHITSPDPDGAGAVLAMERALKDAGLSPEDIDYVNAHATSTPLGDAAEAEAI 342 (440)
T ss_pred ehHhHHHHHHcCCceeHHhhcCcccccccccCCCCCCcchHHHHHHHHHHHcCCChhhcCeeecccccCcCchHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccCCCc-eeeecccccCccccchhHHHHHHHHHHHhcCCcCCCCCCCCCCCCCCcccccccccc----cCccEEEE
Q 012221 375 KKVFKNTTGI-KINATKSMIGHCLGAAGGLEAIATVKAITTGWLHPSINQFNPEPSVEFDTVANKKQQ----HEVNVAIS 449 (468)
Q Consensus 375 ~~~f~~~~~~-~v~s~k~~~Gh~~~AsG~~~l~~~~~~l~~~~~pp~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~ 449 (468)
+++|+..... .|+|+|+++||.+||+|.++.+..+++++++++|||+|+++|++.+++++++..... .+.+++++
T Consensus 343 ~~vf~~~~~~~~vsStKgaiGHLLGAAGavEAi~Tv~ai~~~~lpptlNlen~d~~~d~~~~~~~~~~~~~~~~~~vals 422 (440)
T KOG1394|consen 343 KRVFGEHNIASKVSSTKGAIGHLLGAAGAVEAIFTVLAINDGVLPPTLNLENPDPGVDLDYVPLKASEKKGGNKVRVALS 422 (440)
T ss_pred HHHhccCCcccccccccchhhhhcccccchhhHhhhhhhhcCccCCcccccCCCccccccccccccccccccccceEEEe
Confidence 9999985433 899999999999999999999999999999999999999999999999976655443 45789999
Q ss_pred EcccccCeeeEEEEeecC
Q 012221 450 NSFGFGGHNSVVAFSAFK 467 (468)
Q Consensus 450 ~s~g~gG~n~~~vl~~~~ 467 (468)
|||||||+|++++|.+|.
T Consensus 423 NSFGFGGtNaSl~fa~~~ 440 (440)
T KOG1394|consen 423 NSFGFGGTNASLCFAKFK 440 (440)
T ss_pred cccccCCcchhheeeecC
Confidence 999999999999999873
|
|
| >PLN02787 3-oxoacyl-[acyl-carrier-protein] synthase II | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-86 Score=677.15 Aligned_cols=412 Identities=61% Similarity=1.054 Sum_probs=385.3
Q ss_pred CCcEEEEeeceeccCCCCHHHHHHHHHcCCCCccccCCCCCCCCCCccccccCCCCCCCCCCccccccCCHHHHHHHHHH
Q 012221 55 KKRVVITGMGLVSVFGNDVDAYYNKLLDGESGITMIDRFDASKFPTRFGGQIRGFSAEGYIDGKNDRRLDDCLRYCIVAG 134 (468)
Q Consensus 55 ~~~V~ItG~g~~~p~g~~~~~~~~~L~~G~~~i~~~~~~~~~~~~~~~~g~v~~~d~~~~i~~~~~~~~d~~~~l~l~a~ 134 (468)
.++|||||||+++|.|.++++||++|.+|+++|+++++|+...++.+++|++++|+++.++++++.++||+++++++.++
T Consensus 128 ~~rVvITG~G~vtp~G~~~~~~w~~L~~G~s~i~~~~~f~~~~~~~~~ag~i~~f~~~~~l~~k~~r~md~~~~~al~Aa 207 (540)
T PLN02787 128 QRRVVVTGMGVVSPLGHDPDVFYNNLLEGVSGISEIERFDCSQFPTRIAGEIKSFSTDGWVAPKLSKRMDKFMLYLLTAG 207 (540)
T ss_pred CCCEEEEeeEEECCCCCCHHHHHHHHHcCCCcccccCccchhhCCccccccccccChhhcCCHHHHHhCCHHHHHHHHHH
Confidence 47999999999999999999999999999999999999999899999999999999888899999999999999999999
Q ss_pred HHHHHHcCCCCccccccccccceEEEeecCCCccchHHHHHHHHHhCCCCcCCcCcchhhhhhhHHHHhhhhCCCCccee
Q 012221 135 KKALEDADLGADISKKIDKERAGVLVGTGMGGLTVFSDGVQALIEKGHRKITPFFIPYAITNMGSALLAIDLGFMGPNYS 214 (468)
Q Consensus 135 ~~AL~dAgl~~~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~ia~~lgl~Gp~~~ 214 (468)
++||+|||+.++..+.++..|+||++|++.++...+++.++.+. ...++++|+.++..+.|..++++++.||++||+++
T Consensus 208 ~eAL~dAGl~~~~~~~~~~~r~GV~vGt~~g~~~~~~~~~~~l~-~~~~~~~p~~~~~~~~n~~a~~ia~~~gl~Gp~~t 286 (540)
T PLN02787 208 KKALADGGITEDVMKELDKTKCGVLIGSAMGGMKVFNDAIEALR-ISYRKMNPFCVPFATTNMGSAMLAMDLGWMGPNYS 286 (540)
T ss_pred HHHHHHcCCCcccccccCCCceEEEEEeccchHHHHHHHHHHHh-hccccCCcchhhhhcccHHHHHHHHHhCCCCCccc
Confidence 99999999943222356778999999999999887777666654 45677899999999999999999999999999999
Q ss_pred ecccChHHHHHHHHHHHHHHhCCCCEEEEEeeccccchhhhhHhhhccccccCCCCCCCCCCCCCCCCCCeeecceeEEE
Q 012221 215 ISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWDKDRDGFVMGEGAGVL 294 (468)
Q Consensus 215 v~~acas~l~Al~~A~~~I~~G~~d~~lvgG~e~~~~p~~~~~~~~~~~l~~~~~~~~~~~rpfd~~~~G~v~gEGaaav 294 (468)
|+++|+|++.||..|+++|++|++|+|||||+|..++|..+.+|..++.|+.++++|+..|||||.+++||++|||++++
T Consensus 287 istACASs~~Ai~~A~~~Ir~G~aD~aLvGG~d~~l~p~~~~~f~~~~aLS~~~~~p~~~~rPFD~~rdGfv~GEGAa~l 366 (540)
T PLN02787 287 ISTACATSNFCILNAANHIIRGEADVMLCGGSDAAIIPIGLGGFVACRALSQRNDDPTKASRPWDMNRDGFVMGEGAGVL 366 (540)
T ss_pred cccccccHHHHHHHHHHHHHcCCCCEEEEeccccccCHHHHHHHHHHHHhhccCCCcccccCCcccCCCCcccccceEEE
Confidence 99999999999999999999999999999999998999999999999999988888999999999999999999999999
Q ss_pred EecchhHHHhcCCceEEEEEEEEEcCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCcCEEEEccCCCccCCHHHHHHH
Q 012221 295 VMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAGVSPEEVNYINAHATSTLAGDLAEINAI 374 (468)
Q Consensus 295 vL~~~~~A~~~g~~i~a~i~g~~~~~d~~~~~~~~~~~~~~~~~i~~al~~Agl~~~dId~v~~h~~gt~~~D~~E~~al 374 (468)
|||++++|++||++||++|+|++.++|++|++.|++++.++.++|++||++||++|+|||||++|||||+.+|..|.++|
T Consensus 367 VLE~~e~A~~rGa~IyA~I~G~g~s~Da~~~t~p~p~g~g~~~am~~AL~~AGl~p~dIdyInaHGTGT~~gD~~E~~Ai 446 (540)
T PLN02787 367 LLEELEHAKKRGANIYAEFLGGSFTCDAYHMTEPHPEGAGVILCIEKALAQSGVSKEDVNYINAHATSTKAGDLKEYQAL 446 (540)
T ss_pred EEeeHHHHHHCCCeeEEEEEEEEEecCCCCCCCCCcCHHHHHHHHHHHHHHcCCCHHHCcEEEccCccCCCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccCCCceeeecccccCccccchhHHHHHHHHHHHhcCCcCCCCCCCCCCCCCCccccc-ccccccCccEEEEEccc
Q 012221 375 KKVFKNTTGIKINATKSMIGHCLGAAGGLEAIATVKAITTGWLHPSINQFNPEPSVEFDTVA-NKKQQHEVNVAISNSFG 453 (468)
Q Consensus 375 ~~~f~~~~~~~v~s~k~~~Gh~~~AsG~~~l~~~~~~l~~~~~pp~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~s~g 453 (468)
+++|+....++|+++|+++||+++|+|++++++++++|++|+||||+|+++|++.++++++. ...+.++.+++|+||||
T Consensus 447 ~~~Fg~~~~~pV~S~Ks~iGH~~gAAGa~eli~~~lal~~g~iPPt~n~~~pd~~~~~~~~v~~~~~~~~ir~aL~nSfG 526 (540)
T PLN02787 447 MRCFGQNPELRVNSTKSMIGHLLGAAGAVEAIATVQAIRTGWVHPNINLENPESGVDTKVLVGPKKERLDIKVALSNSFG 526 (540)
T ss_pred HHHhCCCCCceeeCCCCCcCCCcccchHHHHHHHHHHHhcCCcCCCCCCCCCCccCCcccccccccccCCcCEEEEeeec
Confidence 99999755689999999999999999999999999999999999999999999999988744 34555678999999999
Q ss_pred ccCeeeEEEEeecC
Q 012221 454 FGGHNSVVAFSAFK 467 (468)
Q Consensus 454 ~gG~n~~~vl~~~~ 467 (468)
|||+|+++||+++.
T Consensus 527 FGG~Naslvl~~~~ 540 (540)
T PLN02787 527 FGGHNSSILFAPYK 540 (540)
T ss_pred CCceeEEEEEEeCC
Confidence 99999999999874
|
|
| >PRK08722 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-84 Score=652.52 Aligned_cols=408 Identities=48% Similarity=0.800 Sum_probs=386.8
Q ss_pred CcEEEEeeceeccCCCCHHHHHHHHHcCCCCccccCCCCCCCCCCccccccCCCCCCCCCCccccccCCHHHHHHHHHHH
Q 012221 56 KRVVITGMGLVSVFGNDVDAYYNKLLDGESGITMIDRFDASKFPTRFGGQIRGFSAEGYIDGKNDRRLDDCLRYCIVAGK 135 (468)
Q Consensus 56 ~~V~ItG~g~~~p~g~~~~~~~~~L~~G~~~i~~~~~~~~~~~~~~~~g~v~~~d~~~~i~~~~~~~~d~~~~l~l~a~~ 135 (468)
+||||||||+++|.|.++++||++|.+|+++|+++++|+...++.+++|++++|++++++++++.++||+++++++.+++
T Consensus 4 ~~VvItG~g~~~p~g~~~~~~w~~L~~g~s~i~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~d~~~~~~l~a~~ 83 (414)
T PRK08722 4 RRVVVTGMGMLSPVGNTVESSWKALLAGQSGIVNIEHFDTTNFSTRFAGLVKDFNCEEYMSKKDARKMDLFIQYGIAAGI 83 (414)
T ss_pred CCEEEEeeEEECCCCCCHHHHHHHHHhCCCeeeecCccccccCCCceeEEcCCCChhHcCCHHHHhhcCHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999988899999999999999888999999999999999999999
Q ss_pred HHHHHcCCCCccccccccccceEEEeecCCCccchHHHHHHHHHhCCCCcCCcCcchhhhhhhHHHHhhhhCCCCcceee
Q 012221 136 KALEDADLGADISKKIDKERAGVLVGTGMGGLTVFSDGVQALIEKGHRKITPFFIPYAITNMGSALLAIDLGFMGPNYSI 215 (468)
Q Consensus 136 ~AL~dAgl~~~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~ia~~lgl~Gp~~~v 215 (468)
+||+|||+ +....+..|+||++|++.+++...+++++.+.+++.+.++|+.++..+.|.+++++++.||++||+++|
T Consensus 84 ~Al~dAGl---~~~~~~~~r~Gv~vGt~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~is~~~gl~Gp~~ti 160 (414)
T PRK08722 84 QALDDSGL---EVTEENAHRIGVAIGSGIGGLGLIEAGHQALVEKGPRKVSPFFVPSTIVNMIAGNLSIMRGLRGPNIAI 160 (414)
T ss_pred HHHHHcCC---CccccCCCCEEEEEeeCCCcchhHHHHHHHHHhcCcccCCchhcccccccHHHHHHHHHhCCCCCcccc
Confidence 99999999 444556789999999999999888888888888888889999999999999999999999999999999
Q ss_pred cccChHHHHHHHHHHHHHHhCCCCEEEEEeeccccchhhhhHhhhccccccCCCCCCCCCCCCCCCCCCeeecceeEEEE
Q 012221 216 STACATSNYCFYAAANHIRRGEADLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWDKDRDGFVMGEGAGVLV 295 (468)
Q Consensus 216 ~~acas~l~Al~~A~~~I~~G~~d~~lvgG~e~~~~p~~~~~~~~~~~l~~~~~~~~~~~rpfd~~~~G~v~gEGaaavv 295 (468)
+++|+|++.||..|+++|++|++|+|||||+|...+|..+.+|..++.|+..+++|+..|||||.+++|+++|||++++|
T Consensus 161 ~~aCas~~~Al~~A~~~i~~G~~d~~lvgg~d~~~~~~~~~~f~~~~~ls~~~~~p~~~~rpfd~~~~G~~~gEGaaalv 240 (414)
T PRK08722 161 STACTTGLHNIGHAARMIAYGDADAMVAGGAEKASTPLGMAGFGAAKALSTRNDEPQKASRPWDKDRDGFVLGDGAGMMV 240 (414)
T ss_pred ccccHHHHHHHHHHHHHHHcCCCCEEEEecccccCCHHHHHHHHHcCCcccCCCCCccccCcCcCCCCceEeeceEEEEE
Confidence 99999999999999999999999999999999989999999999999998877788899999999999999999999999
Q ss_pred ecchhHHHhcCCceEEEEEEEEEcCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCcCEEEEccCCCccCCHHHHHHHH
Q 012221 296 MESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAGVSPEEVNYINAHATSTLAGDLAEINAIK 375 (468)
Q Consensus 296 L~~~~~A~~~g~~i~a~i~g~~~~~d~~~~~~~~~~~~~~~~~i~~al~~Agl~~~dId~v~~h~~gt~~~D~~E~~al~ 375 (468)
||++++|+++|+++|++|+|++.++|+++++.|++++.+..++|+++|+++||+|+||||||+|||||+.+|..|.++|+
T Consensus 241 Le~~~~A~~~g~~i~a~i~g~~~~~d~~~~~~p~~~~~~~~~a~~~Al~~agi~~~did~ie~hgtgt~~~D~~E~~al~ 320 (414)
T PRK08722 241 LEEYEHAKARGAKIYAELVGFGMSGDAYHMTSPSEDGSGGALAMEAAMRDAGVTGEQIGYVNAHGTSTPAGDVAEIKGIK 320 (414)
T ss_pred EccHHHHHHCCCeEEEEEEEEEEcCCCCCCCCCCcchHHHHHHHHHHHHHcCCCHHHcCEEEccCccCCCCCHHHHHHHH
Confidence 99999999999999999999999999999999999998899999999999999999999999999999999999999999
Q ss_pred HHhccC--CCceeeecccccCccccchhHHHHHHHHHHHhcCCcCCCCCCCCCCCCCCccccccccccc-CccEEEEEcc
Q 012221 376 KVFKNT--TGIKINATKSMIGHCLGAAGGLEAIATVKAITTGWLHPSINQFNPEPSVEFDTVANKKQQH-EVNVAISNSF 452 (468)
Q Consensus 376 ~~f~~~--~~~~v~s~k~~~Gh~~~AsG~~~l~~~~~~l~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~s~ 452 (468)
++|+.. ..++|++.|+++||+++|||++++++++++|++++||||+|+++|+|.+++++++.+.+.+ +.+++++|||
T Consensus 321 ~~fg~~~~~~~~v~s~K~~~GH~~~AaG~~~~~~~~l~l~~~~ipp~~n~~~~~~~~~~~~v~~~~~~~~~~~~~l~nsf 400 (414)
T PRK08722 321 RALGEAGSKQVLVSSTKSMTGHLLGAAGSVEAIITVMSLVDQIVPPTINLDDPEEGLDIDLVPHTARKVESMEYAICNSF 400 (414)
T ss_pred HHhcccCCCCceeeCcccccccchHHHHHHHHHHHHHHHhcCccCCCCCCCCCCCCCCcccCCCccccCCCCCEEEEecc
Confidence 999863 4689999999999999999999999999999999999999999999999999888766553 6899999999
Q ss_pred cccCeeeEEEEeec
Q 012221 453 GFGGHNSVVAFSAF 466 (468)
Q Consensus 453 g~gG~n~~~vl~~~ 466 (468)
||||+|+|+||++.
T Consensus 401 GfGG~n~~lvl~~~ 414 (414)
T PRK08722 401 GFGGTNGSLIFKKM 414 (414)
T ss_pred cCCCceEEEEEecC
Confidence 99999999999873
|
|
| >COG0304 FabB 3-oxoacyl-(acyl-carrier-protein) synthase [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-84 Score=639.64 Aligned_cols=409 Identities=47% Similarity=0.790 Sum_probs=383.8
Q ss_pred CCCcEEEEeeceeccCCCCHHHHHHHHHcCCCCccccCCCCCCCCCCccccccCCCCCCCCCCccccccCCHHHHHHHHH
Q 012221 54 PKKRVVITGMGLVSVFGNDVDAYYNKLLDGESGITMIDRFDASKFPTRFGGQIRGFSAEGYIDGKNDRRLDDCLRYCIVA 133 (468)
Q Consensus 54 ~~~~V~ItG~g~~~p~g~~~~~~~~~L~~G~~~i~~~~~~~~~~~~~~~~g~v~~~d~~~~i~~~~~~~~d~~~~l~l~a 133 (468)
++++|||||+|+++|+|.+.+++|++|..|++++..+++|+...+++++.+.+++| +.++.+++.++||+.++|++.+
T Consensus 1 ~~~rvviTG~g~vs~lG~~~~~~~~~l~~g~sgi~~~~~~~~~~~~~~~~~~i~~~--~~~~~~~~~~~~d~~~~~a~~A 78 (412)
T COG0304 1 SMRRVVITGLGIVSSLGNGVEEVWAALLAGKSGIRPITRFDASGLGVKIAGEIKDL--DDQIAKKERRFMDRFSQLAVVA 78 (412)
T ss_pred CCceEEEecceeeecccCCHHHHHHHHhcCCCCCCccccccccCCCCccccccccc--ccccchHHhhcccHHHHHHHHH
Confidence 36899999999999999999999999999999999999999999999999999998 5557788888999999999999
Q ss_pred HHHHHHHcCCCCccccccccccceEEEeecCCCccchHHHHHHHHHhCCCC-cCCcCcchhhhhhhHHHHhhhhCCCCcc
Q 012221 134 GKKALEDADLGADISKKIDKERAGVLVGTGMGGLTVFSDGVQALIEKGHRK-ITPFFIPYAITNMGSALLAIDLGFMGPN 212 (468)
Q Consensus 134 ~~~AL~dAgl~~~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~n~~a~~ia~~lgl~Gp~ 212 (468)
+.+||+|||+.. ....+. |+||++|++.+++...+.....+..++.++ ++|+.++..+.|+.++.+++.+|++||+
T Consensus 79 a~eAl~dAgl~~--~~~~~~-r~gv~iGsg~gg~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~vs~~~g~~G~~ 155 (412)
T COG0304 79 AVEALEDAGLDN--ELNVDM-RVGVAIGSGIGGLEDIEFDLDALLLEGLRKRISPFLVPKMLPNLAAGNVAIVFGLKGPN 155 (412)
T ss_pred HHHHHHHcCCCc--ccccCc-cEEEEEeccCCCcchhhhHHHHHHhcCCccCcCchhhhhhccchHHHHHHHHhCCCCCc
Confidence 999999999941 122333 899999999999998876656666666555 8999999999999999999999999999
Q ss_pred eeecccChHHHHHHHHHHHHHHhCCCCEEEEEeeccccchhhhhHhhhccccccCCCCCCCCCCCCCCCCCCeeecceeE
Q 012221 213 YSISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWDKDRDGFVMGEGAG 292 (468)
Q Consensus 213 ~~v~~acas~l~Al~~A~~~I~~G~~d~~lvgG~e~~~~p~~~~~~~~~~~l~~~~~~~~~~~rpfd~~~~G~v~gEGaa 292 (468)
+++.++|+||..||..|+++|+.|++|+||+||+|..+++..+.+|..++.|+.++++|...|||||++||||++|||++
T Consensus 156 ~~~~tACatg~~AIg~A~~~I~~G~ad~~iaGG~e~~i~~~~i~gF~am~Alst~nd~p~~asrPfd~~RdGfv~gEGag 235 (412)
T COG0304 156 YTPVTACATGAHAIGDAVRLIRLGKADVVIAGGAEAAITPLGIAGFEAMRALSTRNDDPEKASRPFDKNRDGFVIGEGAG 235 (412)
T ss_pred CChhhhHHhHHHHHHHHHHHHHcCCCCEEEEcccccccCHHHHHHHHHHHHhccCCCCccccCCCCCCCCCCEEEeccee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecchhHHHhcCCceEEEEEEEEEcCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCcCEEEEccCCCccCCHHHHH
Q 012221 293 VLVMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAGVSPEEVNYINAHATSTLAGDLAEIN 372 (468)
Q Consensus 293 avvL~~~~~A~~~g~~i~a~i~g~~~~~d~~~~~~~~~~~~~~~~~i~~al~~Agl~~~dId~v~~h~~gt~~~D~~E~~ 372 (468)
++|||++|+|++||++||++|.|++.++|++|++.|.|++.+..++|+.||++||++|+|||||++|||+|+.+|..|..
T Consensus 236 ~lVLE~~ehA~aRGA~Iyaei~G~g~~~Da~h~t~P~p~g~Ga~~am~~AL~~Agl~~~~idYinaHgTsT~~nD~~E~~ 315 (412)
T COG0304 236 ALVLEELEHALARGAKIYAEIVGYGTTSDAYHITAPAPDGEGAIRAMRAALADAGLTPEDIDYINAHGTSTPANDKAESL 315 (412)
T ss_pred EEEecChhhHHhCCCceEEEEEEEEecccccccCCCCCCCchHHHHHHHHHHHcCCCHhHCCEEeCCCccCCCccHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccC-CCceeeecccccCccccchhHHHHHHHHHHHhcCCcCCCCCCCCCCCC-CCcccccccccccCccEEEEE
Q 012221 373 AIKKVFKNT-TGIKINATKSMIGHCLGAAGGLEAIATVKAITTGWLHPSINQFNPEPS-VEFDTVANKKQQHEVNVAISN 450 (468)
Q Consensus 373 al~~~f~~~-~~~~v~s~k~~~Gh~~~AsG~~~l~~~~~~l~~~~~pp~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~ 450 (468)
+|+++|+.. ..++|+|+|+++||++||+|.++++.++++|+++++|||+|+++|+|+ ++++++++..+....+++++|
T Consensus 316 ai~~vfg~~~~~~~vsstKs~tGH~lGAaGaveai~~~l~l~~g~ippt~n~~~~dp~~~~l~~v~~~~~~~~~~~~lsn 395 (412)
T COG0304 316 AIKRVFGEHAKSLPVSSTKSLTGHTLGAAGAVEAIISLLALRDGIIPPTINLDNPDPEAADLDVVPNEARTGAVRAALSN 395 (412)
T ss_pred HHHHHhcccccCceeeecccccccChhhHHHHHHHHHHHHHhcCCcCCCCCcCCCCcccccccccCCcccccceeEEEec
Confidence 999999973 448899999999999999999999999999999999999999999997 678999987776669999999
Q ss_pred cccccCeeeEEEEeecC
Q 012221 451 SFGFGGHNSVVAFSAFK 467 (468)
Q Consensus 451 s~g~gG~n~~~vl~~~~ 467 (468)
||||||+|+++|+++++
T Consensus 396 sfGFGG~Na~lv~~~~~ 412 (412)
T COG0304 396 SFGFGGTNASLVFKRYQ 412 (412)
T ss_pred ccccCCcceEEEEecCC
Confidence 99999999999999874
|
|
| >PRK06333 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-82 Score=643.81 Aligned_cols=411 Identities=46% Similarity=0.794 Sum_probs=388.2
Q ss_pred CCcEEEEeeceeccCCCCHHHHHHHHHcCCCCccccCCCCCCCCCCccccccCC--------CCCCCCCCccccccCCHH
Q 012221 55 KKRVVITGMGLVSVFGNDVDAYYNKLLDGESGITMIDRFDASKFPTRFGGQIRG--------FSAEGYIDGKNDRRLDDC 126 (468)
Q Consensus 55 ~~~V~ItG~g~~~p~g~~~~~~~~~L~~G~~~i~~~~~~~~~~~~~~~~g~v~~--------~d~~~~i~~~~~~~~d~~ 126 (468)
+++|+|||+|+++|.|.++++||++|++|+++++++++++...++.+++|++++ ||+++++++++.++||++
T Consensus 3 ~~~V~ItG~g~~~p~g~~~~~~w~~l~~G~s~i~~~~~~~~~~~~~~~~g~i~~~~~~~~~~fd~~~~i~~~~~~~~d~~ 82 (424)
T PRK06333 3 KKRIVVTGMGAVSPLGCGVETFWQRLLAGQSGIRTLTDFPVGDLATKIGGQVPDLAEDAEAGFDPDRYLDPKDQRKMDRF 82 (424)
T ss_pred CCCEEEEcceEECCCCCCHHHHHHHHHcCCCeEEeCCcccccCCCCceEEEeccccccccccCChhHcCCHHHHhhcCHH
Confidence 479999999999999999999999999999999999988888888899999987 888888999999999999
Q ss_pred HHHHHHHHHHHHHHcCCCCcccccc-ccccceEEEeecCCCccchHHHHHHHHHhCCCCcCCcCcchhhhhhhHHHHhhh
Q 012221 127 LRYCIVAGKKALEDADLGADISKKI-DKERAGVLVGTGMGGLTVFSDGVQALIEKGHRKITPFFIPYAITNMGSALLAID 205 (468)
Q Consensus 127 ~~l~l~a~~~AL~dAgl~~~~~~~~-~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~ia~~ 205 (468)
++|++.++++||+|+|+ ++.++ +..++||++|++.+++....+.+..+...+.+.++|+.++..+.|..+++|++.
T Consensus 83 ~~l~~~aa~~Al~dAgl---~~~~~~~~~~~Gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~is~~ 159 (424)
T PRK06333 83 ILFAMAAAKEALAQAGW---DPDTLEDRERTATIIGSGVGGFPAIAEAVRTLDSRGPRRLSPFTIPSFLTNMAAGHVSIR 159 (424)
T ss_pred HHHHHHHHHHHHHhcCC---CccccCCcccEEEEEecCcccHHHHHHHHHHHHhcCCcccChhHHhhhhhhHHHHHHHHH
Confidence 99999999999999999 44455 678999999999999888888888887888888999999999999999999999
Q ss_pred hCCCCcceeecccChHHHHHHHHHHHHHHhCCCCEEEEEeeccccchhhhhHhhhccccccC-CCCCCCCCCCCCCCCCC
Q 012221 206 LGFMGPNYSISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAIIPIGLGGFVACRALSQR-NDDPQTASRPWDKDRDG 284 (468)
Q Consensus 206 lgl~Gp~~~v~~acas~l~Al~~A~~~I~~G~~d~~lvgG~e~~~~p~~~~~~~~~~~l~~~-~~~~~~~~rpfd~~~~G 284 (468)
|||+||+++|+++|+||+.||++|+++|++|++|++||||+|..+++..+..|..++.++.. +..|+..|||||.+++|
T Consensus 160 ~gl~Gp~~~v~~aCaSg~~Al~~A~~~I~~G~~d~alvgG~e~~~~~~~~~~f~~~~~l~~~~~~~p~~~~~Pfd~~~~G 239 (424)
T PRK06333 160 YGFKGPLGAPVTACAAGVQAIGDAARLIRSGEADVAVCGGTEAAIDRVSLAGFAAARALSTRFNDAPEQASRPFDRDRDG 239 (424)
T ss_pred hCCCCCCccccchhHHHHHHHHHHHHHHHcCCCCEEEEeeecccCCHHHHHHHHHcccccccCCCCCCcCCCCCCCCCCC
Confidence 99999999999999999999999999999999999999999998999999899999988865 66788899999999999
Q ss_pred eeecceeEEEEecchhHHHhcCCceEEEEEEEEEcCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCcCEEEEccCCCc
Q 012221 285 FVMGEGAGVLVMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAGVSPEEVNYINAHATSTL 364 (468)
Q Consensus 285 ~v~gEGaaavvL~~~~~A~~~g~~i~a~i~g~~~~~d~~~~~~~~~~~~~~~~~i~~al~~Agl~~~dId~v~~h~~gt~ 364 (468)
+++|||++++|||++++|++||+++|++|+|++.++|+++++.|.+++.++.++|++||++||++|+||||||+|||||+
T Consensus 240 ~~~gEGaa~lvLe~~~~A~~rg~~i~a~i~G~~~~~d~~~~~~~~~~~~~~~~a~~~Al~~Agi~p~dId~i~~hgtgt~ 319 (424)
T PRK06333 240 FVMGEGAGILVIETLEHALARGAPPLAELVGYGTSADAYHMTAGPEDGEGARRAMLIALRQAGIPPEEVQHLNAHATSTP 319 (424)
T ss_pred eEEecceEEEEEeeHHHHHHCCCeEEEEEEEEEEcCCCCCCCCCCCCcHHHHHHHHHHHHHcCCCHHHCCEEeccCCCCc
Confidence 99999999999999999999999999999999999999999999889999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHhccCCCceeeecccccCccccchhHHHHHHHHHHHhcCCcCCCCCCCCCCCCCC-cccccccccccC
Q 012221 365 AGDLAEINAIKKVFKNTTGIKINATKSMIGHCLGAAGGLEAIATVKAITTGWLHPSINQFNPEPSVE-FDTVANKKQQHE 443 (468)
Q Consensus 365 ~~D~~E~~al~~~f~~~~~~~v~s~k~~~Gh~~~AsG~~~l~~~~~~l~~~~~pp~~~~~~~~~~~~-~~~~~~~~~~~~ 443 (468)
.+|..|..+|+++|++..++++++.|+++||+++|||++++++++++|++|+||||+|+++|+|.++ +++++...+.++
T Consensus 320 ~~D~~E~~al~~~fg~~~~~~v~s~K~~~GH~~gAaG~~~~~~~~l~l~~g~ipp~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (424)
T PRK06333 320 VGDLGEVAAIKKVFGHVSGLAVSSTKSATGHLLGAAGGVEAIFTILALRDQIAPPTLNLENPDPAAEGLDVVANKARPMD 399 (424)
T ss_pred cchHHHHHHHHHHhCCCCCceeECcccchhhhHHHHHHHHHHHHHHHHhcCCcCCCCCCCCCCCCccccccccCCCcccC
Confidence 9999999999999997667999999999999999999999999999999999999999999999998 787888888888
Q ss_pred ccEEEEEcccccCeeeEEEEeecCC
Q 012221 444 VNVAISNSFGFGGHNSVVAFSAFKP 468 (468)
Q Consensus 444 ~~~~l~~s~g~gG~n~~~vl~~~~~ 468 (468)
.+++++|||||||+|+|+||+++.|
T Consensus 400 ~~~al~~s~gfGG~n~~~il~~~~~ 424 (424)
T PRK06333 400 MDYALSNGFGFGGVNASILFRRWEP 424 (424)
T ss_pred cCEEEEeeecCCCeeEEEEEeccCC
Confidence 9999999999999999999999976
|
|
| >PRK07910 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-81 Score=629.57 Aligned_cols=404 Identities=34% Similarity=0.588 Sum_probs=374.8
Q ss_pred CCcEEEEeeceeccCCCCHHHHHHHHHcCCCCccccCCC--CCCCCCCccccccC-CCCCCCCCCccccccCCHHHHHHH
Q 012221 55 KKRVVITGMGLVSVFGNDVDAYYNKLLDGESGITMIDRF--DASKFPTRFGGQIR-GFSAEGYIDGKNDRRLDDCLRYCI 131 (468)
Q Consensus 55 ~~~V~ItG~g~~~p~g~~~~~~~~~L~~G~~~i~~~~~~--~~~~~~~~~~g~v~-~~d~~~~i~~~~~~~~d~~~~l~l 131 (468)
+++|||||||+++|.|.+.++||++|++|+++|++++++ +...++.+++|++. +||. +++++++++|||++++++
T Consensus 11 ~~~VvItGig~~sp~g~~~~~~w~~L~~G~s~i~~~~~~~~~~~~~~~~~~g~i~~~~d~--~~~~~~~~~~d~~~~~~l 88 (418)
T PRK07910 11 FPNVVVTGIAMTTALATDAETTWKLLLDGQSGIRTLDDPFVEEFDLPVRIGGHLLEEFDH--QLTRVELRRMSYLQRMST 88 (418)
T ss_pred CCCEEEEeeEEECCCCCCHHHHHHHHHcCCCeeEeCChhhhhccCCCcceEEEeccCccc--cCCHHHHhhccHHHHHHH
Confidence 579999999999999999999999999999999998765 33357778888884 4553 478899999999999999
Q ss_pred HHHHHHHHHcCCCCccccccccccceEEEeecCCCccchHHHHHHHHHhCCCCcCCcCcchhhhhhhHHHHhhhhCCCCc
Q 012221 132 VAGKKALEDADLGADISKKIDKERAGVLVGTGMGGLTVFSDGVQALIEKGHRKITPFFIPYAITNMGSALLAIDLGFMGP 211 (468)
Q Consensus 132 ~a~~~AL~dAgl~~~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~ia~~lgl~Gp 211 (468)
.++++||+|||+ . ..+..|+||++|++.++.......+..+...+.+.++|+.++..+.|.++.++++.++++||
T Consensus 89 ~aa~~AledAg~---~--~~~~~r~Gv~~G~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~is~~~~~~G~ 163 (418)
T PRK07910 89 VLGRRVWENAGS---P--EVDTNRLMVSIGTGLGSAEELVFAYDDMRARGLRAVSPLAVQMYMPNGPAAAVGLERHAKAG 163 (418)
T ss_pred HHHHHHHHHcCC---C--CCCcccEEEEEEEccCccHhHHHHHHHHHhcCcccCChhHHHHhccccHHHHHHHHhCCCCC
Confidence 999999999998 2 35678999999999999888888888887778888899999999999999999999999999
Q ss_pred ceeecccChHHHHHHHHHHHHHHhCCCCEEEEEeeccccchhhhhHhhhccc-cccCCCCCCCCCCCCCCCCCCeeecce
Q 012221 212 NYSISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAIIPIGLGGFVACRA-LSQRNDDPQTASRPWDKDRDGFVMGEG 290 (468)
Q Consensus 212 ~~~v~~acas~l~Al~~A~~~I~~G~~d~~lvgG~e~~~~p~~~~~~~~~~~-l~~~~~~~~~~~rpfd~~~~G~v~gEG 290 (468)
+++++++|+|++.||++|+++|++|++|++||||+|..++|..+..|..++. ++..++.|++.|||||.+++|+++|||
T Consensus 164 ~~ti~taCaS~~~Al~~A~~~I~~G~~d~aivgg~~~~~~~~~~~~f~~~~~~ls~~~~~~~~~~rPFd~~~~G~v~gEG 243 (418)
T PRK07910 164 VITPVSACASGSEAIAQAWRQIVLGEADIAICGGVETRIEAVPIAGFAQMRIVMSTNNDDPAGACRPFDKDRDGFVFGEG 243 (418)
T ss_pred cccccchhHHHHHHHHHHHHHHHcCCCCEEEEccccccCCHHHHHHHHhcCCccccCCCCCCCCcCCCcCCCCCEeeece
Confidence 9999999999999999999999999999999999999899999999999998 887677788999999999999999999
Q ss_pred eEEEEecchhHHHhcCCceEEEEEEEEEcCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCcCEEEEccCCCccCCHHH
Q 012221 291 AGVLVMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAGVSPEEVNYINAHATSTLAGDLAE 370 (468)
Q Consensus 291 aaavvL~~~~~A~~~g~~i~a~i~g~~~~~d~~~~~~~~~~~~~~~~~i~~al~~Agl~~~dId~v~~h~~gt~~~D~~E 370 (468)
++++|||++++|++||++||++|+|++.++|+++...|++.+.++.++|+++|+++|++|+||||||+|||||+.+|..|
T Consensus 244 aa~vvLe~~~~A~~rg~~i~a~i~g~~~~~dg~~~~~~~~~~~~~~~a~~~Al~~agi~~~did~ie~hgtgt~~~D~~E 323 (418)
T PRK07910 244 GALMVIETEEHAKARGANILARIMGASITSDGFHMVAPDPNGERAGHAMTRAIELAGLTPGDIDHVNAHATGTSVGDVAE 323 (418)
T ss_pred EEEEEEeeHHHHHhCCCcEEEEEEEEEEecCCCCCCCCCCCHHHHHHHHHHHHHHhCCCHHHCCEEEcCCcCCCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCCCceeeecccccCccccchhHHHHHHHHHHHhcCCcCCCCCCCCCCCCCCcccccccccccCccEEEEE
Q 012221 371 INAIKKVFKNTTGIKINATKSMIGHCLGAAGGLEAIATVKAITTGWLHPSINQFNPEPSVEFDTVANKKQQHEVNVAISN 450 (468)
Q Consensus 371 ~~al~~~f~~~~~~~v~s~k~~~Gh~~~AsG~~~l~~~~~~l~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 450 (468)
.++|+++|+. ..+++++.|+++||+++|||++++++++++|++++|||++|+++|+|++++++++...+..+.+++++|
T Consensus 324 ~~Al~~~fg~-~~~~v~s~K~~~GH~~~AaG~~~li~~~l~l~~~~ipp~~n~~~~~p~~~l~~~~~~~~~~~~~~al~n 402 (418)
T PRK07910 324 GKAINNALGG-HRPAVYAPKSALGHSVGAVGAVESILTVLALRDGVIPPTLNLENLDPEIDLDVVAGEPRPGNYRYAINN 402 (418)
T ss_pred HHHHHHHhCC-CCCceeCccccccccHHHHHHHHHHHHHHHHhcCccCCCCCCCCCCCCCCcccCCCCCcCCCccEEEEe
Confidence 9999999996 346799999999999999999999999999999999999999999999999988766656678999999
Q ss_pred cccccCeeeEEEEeec
Q 012221 451 SFGFGGHNSVVAFSAF 466 (468)
Q Consensus 451 s~g~gG~n~~~vl~~~ 466 (468)
||||||+|+++||+++
T Consensus 403 sfGfGG~N~slvl~~~ 418 (418)
T PRK07910 403 SFGFGGHNVALAFGRY 418 (418)
T ss_pred eecCCCeeEEEEEecC
Confidence 9999999999999975
|
|
| >cd00832 CLF Chain-length factor (CLF) is a factor required for polyketide chain initiation of aromatic antibiotic-producing polyketide synthases (PKSs) of filamentous bacteria | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-81 Score=626.63 Aligned_cols=399 Identities=29% Similarity=0.466 Sum_probs=374.7
Q ss_pred CcEEEEeeceeccCCCCHHHHHHHHHcCCCCccccCCCCCCCCCCccccccCCCCCCCCCCccccccCCHHHHHHHHHHH
Q 012221 56 KRVVITGMGLVSVFGNDVDAYYNKLLDGESGITMIDRFDASKFPTRFGGQIRGFSAEGYIDGKNDRRLDDCLRYCIVAGK 135 (468)
Q Consensus 56 ~~V~ItG~g~~~p~g~~~~~~~~~L~~G~~~i~~~~~~~~~~~~~~~~g~v~~~d~~~~i~~~~~~~~d~~~~l~l~a~~ 135 (468)
+||||||||+++|.|.++++||++|.+|+++|+++++|+...++.++++.+++|+.++++++++.++||++++|++.+++
T Consensus 1 ~~VvItG~G~vsp~G~~~~~~w~~L~~G~s~i~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~d~~~~~~l~aa~ 80 (399)
T cd00832 1 RRAVVTGIGVVAPNGLGVEEYWKAVLDGRSGLGPITRFDPSGYPARLAGEVPDFDAAEHLPGRLLPQTDRMTRLALAAAD 80 (399)
T ss_pred CCEEEEeeEEeCCCCCCHHHHHHHHHhCCCeEeeCCccccccCCCceeEEeCCcChhhcCCHHHHhhCCHHHHHHHHHHH
Confidence 57999999999999999999999999999999999999988888899999999998888999999999999999999999
Q ss_pred HHHHHcCCCCccccccccccceEEEeecCCCccchHHHHHHHHHhCCCCcCCcCcchhhhhhhHHHHhhhhCCCCcceee
Q 012221 136 KALEDADLGADISKKIDKERAGVLVGTGMGGLTVFSDGVQALIEKGHRKITPFFIPYAITNMGSALLAIDLGFMGPNYSI 215 (468)
Q Consensus 136 ~AL~dAgl~~~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~ia~~lgl~Gp~~~v 215 (468)
+||+|||+ ++..++..|+||++|++.+++......+..+...+...++|+.++..+.|..+++|++.||++||+++|
T Consensus 81 eAl~dAGl---~~~~~~~~r~Gv~~Gt~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~is~~~gl~Gp~~ti 157 (399)
T cd00832 81 WALADAGV---DPAALPPYDMGVVTASAAGGFEFGQRELQKLWSKGPRHVSAYQSFAWFYAVNTGQISIRHGMRGPSGVV 157 (399)
T ss_pred HHHHHcCC---CccccCCCceEEEEccCCccHHHHHHHHHHHHhcCccccChhhhhhhhhhHHHHHHHHHhCCCCCcccc
Confidence 99999999 555677889999999999988877777777777777888899888999999999999999999999999
Q ss_pred cccChHHHHHHHHHHHHHHhCCCCEEEEEeeccccchhhhhHhhhccccccCCCCCCCCCCCCCCCCCCeeecceeEEEE
Q 012221 216 STACATSNYCFYAAANHIRRGEADLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWDKDRDGFVMGEGAGVLV 295 (468)
Q Consensus 216 ~~acas~l~Al~~A~~~I~~G~~d~~lvgG~e~~~~p~~~~~~~~~~~l~~~~~~~~~~~rpfd~~~~G~v~gEGaaavv 295 (468)
+++|+|++.||.+|+++|++|+ |++||||+|..++|..+..|..++.|+. ..+|...|||||.+++|+++|||++++|
T Consensus 158 ~~acaS~~~Al~~A~~~i~~G~-d~~i~gg~d~~~~p~~~~~~~~~~~ls~-~~~p~~~~rPFd~~~~G~~~gEGa~~lv 235 (399)
T cd00832 158 VAEQAGGLDALAQARRLVRRGT-PLVVSGGVDSALCPWGWVAQLSSGRLST-SDDPARAYLPFDAAAAGYVPGEGGAILV 235 (399)
T ss_pred cchhHHHHHHHHHHHHHHHcCC-CeEEEEeeccccCHHHHHHHHhccccCC-CCCCCCCcCCCcCCCCCEeeeceEEEEE
Confidence 9999999999999999999999 9999999999999999999999999886 4557789999999999999999999999
Q ss_pred ecchhHHHhcCCceEEEEEEEEEcCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCcCEEEEccCCCccCCHHHHHHHH
Q 012221 296 MESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAGVSPEEVNYINAHATSTLAGDLAEINAIK 375 (468)
Q Consensus 296 L~~~~~A~~~g~~i~a~i~g~~~~~d~~~~~~~~~~~~~~~~~i~~al~~Agl~~~dId~v~~h~~gt~~~D~~E~~al~ 375 (468)
||++++|++||++||++|+|++.++|+++... .+.++.++|+++|+++|++|+|||||++|||||+.+|..|.++|+
T Consensus 236 Le~~~~A~~rg~~i~a~i~g~~~~~d~~~~~~---~~~~~~~a~~~al~~ag~~~~~i~~v~~hgtgt~~~D~~E~~al~ 312 (399)
T cd00832 236 LEDAAAARERGARVYGEIAGYAATFDPPPGSG---RPPGLARAIRLALADAGLTPEDVDVVFADAAGVPELDRAEAAALA 312 (399)
T ss_pred EeeHHHHHHCCCeEEEEEEeEEEcCCCCCCCC---CHHHHHHHHHHHHHHcCCCHHHccEEEeccCcCCCCCHHHHHHHH
Confidence 99999999999999999999999999987542 478899999999999999999999999999999999999999999
Q ss_pred HHhccCCCceeeecccccCccccchhHHHHHHHHHHHhcCCcCCCCCCCCCCCCCCcccccccccccCccEEEEEccccc
Q 012221 376 KVFKNTTGIKINATKSMIGHCLGAAGGLEAIATVKAITTGWLHPSINQFNPEPSVEFDTVANKKQQHEVNVAISNSFGFG 455 (468)
Q Consensus 376 ~~f~~~~~~~v~s~k~~~Gh~~~AsG~~~l~~~~~~l~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~g~g 455 (468)
++|+. ..++|++.|+++||+++|+|++++++++++|++++||||+|+++|+|++++++++.+.++.+.|++++||||||
T Consensus 313 ~~fg~-~~~pv~s~K~~~Gh~~~aaG~~~l~~~~l~l~~~~ipp~~n~~~~~p~~~l~~v~~~~~~~~~~~al~nsfgfG 391 (399)
T cd00832 313 AVFGP-RGVPVTAPKTMTGRLYAGGAPLDVATALLALRDGVIPPTVNVTDVPPAYGLDLVTGRPRPAALRTALVLARGRG 391 (399)
T ss_pred HHhCC-CCCceeCCCchhcchHHHHHHHHHHHHHHHHhCCCcCCCCCCCCCCCCCCcccCCCcccCCCCCEEEEeccCCC
Confidence 99987 36899999999999999999999999999999999999999999999999999887777778999999999999
Q ss_pred CeeeEEEE
Q 012221 456 GHNSVVAF 463 (468)
Q Consensus 456 G~n~~~vl 463 (468)
|+|+|+||
T Consensus 392 G~na~lvl 399 (399)
T cd00832 392 GFNSALVV 399 (399)
T ss_pred CcceEEEC
Confidence 99999986
|
CLFs have been shown to have decarboxylase activity towards malonyl-acyl carrier protein (ACP). CLFs are similar to other elongation ketosynthase domains, but their active site cysteine is replaced by a conserved glutamine. |
| >PRK08439 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-80 Score=624.99 Aligned_cols=404 Identities=45% Similarity=0.741 Sum_probs=382.5
Q ss_pred CcEEEEeeceeccCCCCHHHHHHHHHcCCCCccccCCCCCCCCCCccccccCCCCCCCCCCccccccCCHHHHHHHHHHH
Q 012221 56 KRVVITGMGLVSVFGNDVDAYYNKLLDGESGITMIDRFDASKFPTRFGGQIRGFSAEGYIDGKNDRRLDDCLRYCIVAGK 135 (468)
Q Consensus 56 ~~V~ItG~g~~~p~g~~~~~~~~~L~~G~~~i~~~~~~~~~~~~~~~~g~v~~~d~~~~i~~~~~~~~d~~~~l~l~a~~ 135 (468)
+||||||||+++|.|.++++||++|++|+++|+++++|+...++.+++|.+++|+++.++++++.++|++..+|++.+++
T Consensus 2 ~~v~ItG~g~vsp~G~~~~~~~~~L~~G~s~i~~~~~~~~~~~~~~~~g~i~~f~~~~~~~~~~~~~~~~~~~l~~~Aa~ 81 (406)
T PRK08439 2 KRVVVTGIGMINSLGLNKESSFKAICNGECGIKKITLFDASDFPVQIAGEITDFDPTEVMDPKEVKKADRFIQLGLKAAR 81 (406)
T ss_pred CCEEEEeeEEECCCcCCHHHHHHHHHcCCCceEeCCCccccCCCCceeEEcCCcChhhcCCHHHHhhcCHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999988899999999999999888999999999999999999999
Q ss_pred HHHHHcCCCCccccccccccceEEEeecCCCccchHHHHHHHHHhCCCCcCCcCcchhhhhhhHHHHhhhhCCCCcceee
Q 012221 136 KALEDADLGADISKKIDKERAGVLVGTGMGGLTVFSDGVQALIEKGHRKITPFFIPYAITNMGSALLAIDLGFMGPNYSI 215 (468)
Q Consensus 136 ~AL~dAgl~~~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~ia~~lgl~Gp~~~v 215 (468)
+||+|||+ ++.+++..++|+++|++.+++...+..+..+...+.+.++|+.++..+.|.+++++++.||++||++++
T Consensus 82 ~AL~dAGl---~~~~~~~~r~Gv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~is~~~gl~Gp~~~~ 158 (406)
T PRK08439 82 EAMKDAGF---LPEELDAERFGVSSASGIGGLPNIEKNSIICFEKGPRKISPFFIPSALVNMLGGFISIEHGLKGPNLSS 158 (406)
T ss_pred HHHHHcCC---CcccCCCCCEEEEEecCCccHHHHHHHHHHHHhcCccccCchhcccccccHHHHHHHHHhCCCCCcccc
Confidence 99999999 556778889999999999988877777777777788889999999999999999999999999999999
Q ss_pred cccChHHHHHHHHHHHHHHhCCCCEEEEEeeccccchhhhhHhhhccccccCCCCCCCCCCCCCCCCCCeeecceeEEEE
Q 012221 216 STACATSNYCFYAAANHIRRGEADLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWDKDRDGFVMGEGAGVLV 295 (468)
Q Consensus 216 ~~acas~l~Al~~A~~~I~~G~~d~~lvgG~e~~~~p~~~~~~~~~~~l~~~~~~~~~~~rpfd~~~~G~v~gEGaaavv 295 (468)
.++|+|++.||.+|+++|++|++|++||||+|..++|..+..|..++.|+..+.+|+..|||||.+++|+++|||++++|
T Consensus 159 ~~acas~~~Al~~A~~~i~~G~~d~~lv~g~d~~l~~~~~~~f~~~~~ls~~~~~p~~~~rpfd~~~~G~v~gEGa~~lv 238 (406)
T PRK08439 159 VTACAAGTHAIIEAVKTIMLGGADKMLVVGAESAICPVGIGGFAAMKALSTRNDDPKKASRPFDKDRDGFVMGEGAGALV 238 (406)
T ss_pred ccHhHHHHHHHHHHHHHHHcCCCCEEEEecchhccCHHHHHHHHHhCccccCCCCCccCcCCccCCCCcEEeeCceEEEE
Confidence 99999999999999999999999999999999989999999999999999877888899999999999999999999999
Q ss_pred ecchhHHHhcCCceEEEEEEEEEcCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCcCEEEEccCCCccCCHHHHHHHH
Q 012221 296 MESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAGVSPEEVNYINAHATSTLAGDLAEINAIK 375 (468)
Q Consensus 296 L~~~~~A~~~g~~i~a~i~g~~~~~d~~~~~~~~~~~~~~~~~i~~al~~Agl~~~dId~v~~h~~gt~~~D~~E~~al~ 375 (468)
||++++|++||++||++|+|++.++|+++++.|++ .++.++|+++|+++++ +|||||++|||||+.+|..|.++|+
T Consensus 239 Le~~~~A~~rg~~i~a~i~g~~~~~d~~~~~~p~~--~~~~~a~~~al~~ag~--~~i~~v~~hgtgt~~~D~~E~~al~ 314 (406)
T PRK08439 239 LEEYESAKKRGAKIYAEIIGFGESGDANHITSPAP--EGPLRAMKAALEMAGN--PKIDYINAHGTSTPYNDKNETAALK 314 (406)
T ss_pred EccHHHHHHCCCeEEEEEEeEEccCCCCCCCCCCH--HHHHHHHHHHHHHcCC--CccCEEEccCCcCCCCCHHHHHHHH
Confidence 99999999999999999999999999999988866 6778999999999999 7999999999999999999999999
Q ss_pred HHhccC-CCceeeecccccCccccchhHHHHHHHHHHHhcCCcCCCCCCCCCCCCCCcccccccccccCccEEEEEcccc
Q 012221 376 KVFKNT-TGIKINATKSMIGHCLGAAGGLEAIATVKAITTGWLHPSINQFNPEPSVEFDTVANKKQQHEVNVAISNSFGF 454 (468)
Q Consensus 376 ~~f~~~-~~~~v~s~k~~~Gh~~~AsG~~~l~~~~~~l~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~g~ 454 (468)
++|+.. ..+++++.|+++||+++|||++++++++++|++|+|||++|+++|+|++++++++.+.++.+++++++|||||
T Consensus 315 ~~f~~~~~~~~v~s~K~~~Gh~~~AsG~~~~~~~~~~l~~~~ipp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~nsfgf 394 (406)
T PRK08439 315 ELFGSKEKVPPVSSTKGQIGHCLGAAGAIEAVISIMAMRDGILPPTINQETPDPECDLDYIPNVARKAELNVVMSNSFGF 394 (406)
T ss_pred HHhcccCCCCeEECcccccccCchhhhHHHHHHHHHHHhCCeeCCCCCCCCCCCCCCcccCCCccccCCCCEEEEeeecC
Confidence 999873 3468999999999999999999999999999999999999999999999999998887778899999999999
Q ss_pred cCeeeEEEEeec
Q 012221 455 GGHNSVVAFSAF 466 (468)
Q Consensus 455 gG~n~~~vl~~~ 466 (468)
||+|+|+||+++
T Consensus 395 GG~n~~lvl~~~ 406 (406)
T PRK08439 395 GGTNGVVIFKKV 406 (406)
T ss_pred CCceEEEEEecC
Confidence 999999999985
|
|
| >PRK09116 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-80 Score=624.11 Aligned_cols=402 Identities=33% Similarity=0.525 Sum_probs=372.5
Q ss_pred CcEEEEeeceeccCCCCHHHHHHHHHcCCCCccccCCCCC-CCCCCccccccCCCCCCCCCCccccccCCHHHHHHHHHH
Q 012221 56 KRVVITGMGLVSVFGNDVDAYYNKLLDGESGITMIDRFDA-SKFPTRFGGQIRGFSAEGYIDGKNDRRLDDCLRYCIVAG 134 (468)
Q Consensus 56 ~~V~ItG~g~~~p~g~~~~~~~~~L~~G~~~i~~~~~~~~-~~~~~~~~g~v~~~d~~~~i~~~~~~~~d~~~~l~l~a~ 134 (468)
+||||||||+++|.|.+.++||++|.+|+++|+++++|+. ..++.++++.+++|+.+.++++++.++||+.++|++.++
T Consensus 2 ~~VvITG~g~vtp~G~~~~~~~~~L~~g~s~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~r~~~~~~~~al~aa 81 (405)
T PRK09116 2 RRVVVTGMGGVTALGEDWQTIAARLKAGRNAVRRMPEWDRYDGLNTRLAAPIDDFELPAHYTRKKIRSMGRVSLMATRAS 81 (405)
T ss_pred CCEEEEeeEEECCCCCCHHHHHHHHHcCCCCEEeCCchhhccCCCCceEEEecCcChhHhcCHHHHhhCCHHHHHHHHHH
Confidence 7899999999999999999999999999999999998875 468899999999999887788889999999999999999
Q ss_pred HHHHHHcCCCCccccccccccceEEEeecCCCccchHHHHHHHHHhCCCCcCCcCcchhhhhhhHHHHhhhhCCCCccee
Q 012221 135 KKALEDADLGADISKKIDKERAGVLVGTGMGGLTVFSDGVQALIEKGHRKITPFFIPYAITNMGSALLAIDLGFMGPNYS 214 (468)
Q Consensus 135 ~~AL~dAgl~~~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~ia~~lgl~Gp~~~ 214 (468)
++||+|||+.. ....+..|+||++|++.++.....++.+.+.+.....+++..++..++|.+++++++.|+++||+++
T Consensus 82 ~~Al~dAGl~~--~~~~~~~r~Gv~~Gt~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~is~~~~~~Gp~~t 159 (405)
T PRK09116 82 ELALEDAGLLG--DPILTDGRMGIAYGSSTGSTDPIGAFGTMLLEGSMSGITATTYVRMMPHTTAVNVGLFFGLKGRVIP 159 (405)
T ss_pred HHHHHHcCCCC--ccccCCCcEEEEEeecccchHHHHHHHHHHhhcCccccChhhhhhhcccHHHHHHHHHhCCCCCccc
Confidence 99999999832 1234567999999999998887777777777777777889888899999999999999999999999
Q ss_pred ecccChHHHHHHHHHHHHHHhCCCCEEEEEeeccccchhhhhHhhhccccccCCCCCCCCCCCCCCCCCCeeecceeEEE
Q 012221 215 ISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWDKDRDGFVMGEGAGVL 294 (468)
Q Consensus 215 v~~acas~l~Al~~A~~~I~~G~~d~~lvgG~e~~~~p~~~~~~~~~~~l~~~~~~~~~~~rpfd~~~~G~v~gEGaaav 294 (468)
|+++|+|++.||+.|+++|++|++|++||||+|. +++.....|..++.++..+..|...|||||.+++|+++|||++++
T Consensus 160 i~~acas~~~Al~~A~~~I~~G~~d~~lvgg~d~-~~~~~~~~f~~l~~~~~~~~~~~~~~rPfd~~~~G~v~gEGa~~~ 238 (405)
T PRK09116 160 TSSACTSGSQGIGYAYEAIKYGYQTVMLAGGAEE-LCPTEAAVFDTLFATSTRNDAPELTPRPFDANRDGLVIGEGAGTL 238 (405)
T ss_pred ccchhhhHHHHHHHHHHHHHcCCCCEEEEecchh-cChHHHHHHHHhhhhccCCCCCCCCCCCCcCCCCCEeeeccEEEE
Confidence 9999999999999999999999999999999998 788888889888888766677888999999999999999999999
Q ss_pred EecchhHHHhcCCceEEEEEEEEEcCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCcCEEEEccCCCccCCHHHHHHH
Q 012221 295 VMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAGVSPEEVNYINAHATSTLAGDLAEINAI 374 (468)
Q Consensus 295 vL~~~~~A~~~g~~i~a~i~g~~~~~d~~~~~~~~~~~~~~~~~i~~al~~Agl~~~dId~v~~h~~gt~~~D~~E~~al 374 (468)
|||++++|++||++||++|+|++.++|+++++.| +..++.++|+++|++++++|+|||||++|||||+.+|..|.++|
T Consensus 239 vLe~~~~A~~rga~i~a~i~g~~~~~d~~~~~~p--~~~~~~~ai~~AL~~Agi~p~dId~I~~Hgtgt~~~D~~E~~Ai 316 (405)
T PRK09116 239 VLEELEHAKARGATIYAEIVGFGTNSDGAHVTQP--QAETMQIAMELALKDAGLAPEDIGYVNAHGTATDRGDIAESQAT 316 (405)
T ss_pred EEccHHHHHhCCCceEEEEEEEEEcCCCCcCCCC--CHHHHHHHHHHHHHHhCCCHHHcCEEECcCccCCCCCHHHHHHH
Confidence 9999999999999999999999999999988776 55677899999999999999999999999999999999999999
Q ss_pred HHHhccCCCceeeecccccCccccchhHHHHHHHHHHHhcCCcCCCCCCCCCCCCC-CcccccccccccCccEEEEEccc
Q 012221 375 KKVFKNTTGIKINATKSMIGHCLGAAGGLEAIATVKAITTGWLHPSINQFNPEPSV-EFDTVANKKQQHEVNVAISNSFG 453 (468)
Q Consensus 375 ~~~f~~~~~~~v~s~k~~~Gh~~~AsG~~~l~~~~~~l~~~~~pp~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~s~g 453 (468)
+++|+. .++|++.|+++||+++|+|++++++++++|++++||||+|+++|+|+| ++++++.+.++++.+++++||||
T Consensus 317 ~~~fg~--~~pv~s~K~~~GH~~~AaG~~~~~~~~~~l~~~~ippt~~~~~~~~~~~~l~~v~~~~~~~~~~~~l~nsfG 394 (405)
T PRK09116 317 AAVFGA--RMPISSLKSYFGHTLGACGALEAWMSIEMMNEGWFAPTLNLTQVDPACGALDYIMGEAREIDTEYVMSNNFA 394 (405)
T ss_pred HHHhCC--CCeeECcchhhcccHHHHHHHHHHHHHHHHHcCccCCCCCCCCCCCCCcccCccCCCCccCCCCEEEEeeec
Confidence 999986 589999999999999999999999999999999999999999999999 68998888778889999999999
Q ss_pred ccCeeeEEEEe
Q 012221 454 FGGHNSVVAFS 464 (468)
Q Consensus 454 ~gG~n~~~vl~ 464 (468)
|||+|+++||+
T Consensus 395 fGG~n~~lvl~ 405 (405)
T PRK09116 395 FGGINTSLIFK 405 (405)
T ss_pred CCcccEEEEEC
Confidence 99999999985
|
|
| >PRK07967 3-oxoacyl-(acyl carrier protein) synthase I; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-80 Score=618.42 Aligned_cols=401 Identities=38% Similarity=0.618 Sum_probs=365.7
Q ss_pred CcEEEEeeceeccCCCCHHHHHHHHHcCCCCccccCCCCCCCCCCccccccCCCCCCCCCCccccccCCHHHHHHHHHHH
Q 012221 56 KRVVITGMGLVSVFGNDVDAYYNKLLDGESGITMIDRFDASKFPTRFGGQIRGFSAEGYIDGKNDRRLDDCLRYCIVAGK 135 (468)
Q Consensus 56 ~~V~ItG~g~~~p~g~~~~~~~~~L~~G~~~i~~~~~~~~~~~~~~~~g~v~~~d~~~~i~~~~~~~~d~~~~l~l~a~~ 135 (468)
++|||||||+++|.|.+.++||++|++|+++|+++++|+...++.+++|++ +|+++.+++++..++|++..+|++.+++
T Consensus 2 ~rVvITG~G~vsp~G~~~~~~w~~l~~G~sgi~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~r~~~~a~~aa~ 80 (406)
T PRK07967 2 RRVVITGLGIVSSIGNNQQEVLASLREGRSGITFSPEFAEMGMRSQVWGNV-KLDPTGLIDRKVMRFMGDASAYAYLAME 80 (406)
T ss_pred CcEEEEcceEECCCCCCHHHHHHHHHcCCCceeECCcccccCCCCceEEEc-CCChhhcCCHHHhhcCCHHHHHHHHHHH
Confidence 799999999999999999999999999999999999999888999999987 4887777888888999999999999999
Q ss_pred HHHHHcCCCCccccccccccceEEEeecCCCccchHHHHHHHHH-hCCCCcCCcCcchhhhhhhHHHHhhhhCCCCccee
Q 012221 136 KALEDADLGADISKKIDKERAGVLVGTGMGGLTVFSDGVQALIE-KGHRKITPFFIPYAITNMGSALLAIDLGFMGPNYS 214 (468)
Q Consensus 136 ~AL~dAgl~~~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~n~~a~~ia~~lgl~Gp~~~ 214 (468)
+||+|||+ ...+.+..++||++|++.+........+..+.. .+.+.++|+.++..+.|.++++|++.||++||+++
T Consensus 81 ~Al~dAGl---~~~~~~~~rvGv~~gs~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~is~~~~l~Gp~~t 157 (406)
T PRK07967 81 QAIADAGL---SEEQVSNPRTGLIAGSGGGSTRNQVEAADAMRGPRGPKRVGPYAVTKAMASTVSACLATPFKIKGVNYS 157 (406)
T ss_pred HHHHHcCC---CCccCCCCCEEEEEecCCccHHHHHHHHHHHHhccCcccCCchhhcccccchHHHHHHHHHCCCCCccc
Confidence 99999999 445567789999999998877665555555554 56678899999999999999999999999999999
Q ss_pred ecccChHHHHHHHHHHHHHHhCCCCEEEEEeeccccchhhhhHhhhccccccC-CCCCCCCCCCCCCCCCCeeecceeEE
Q 012221 215 ISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAIIPIGLGGFVACRALSQR-NDDPQTASRPWDKDRDGFVMGEGAGV 293 (468)
Q Consensus 215 v~~acas~l~Al~~A~~~I~~G~~d~~lvgG~e~~~~p~~~~~~~~~~~l~~~-~~~~~~~~rpfd~~~~G~v~gEGaaa 293 (468)
|+++|+|++.||..|+++|++|++|++||||+|. +.+.....|..++.|+.. +.+|+..|||||.+++|+++|||+++
T Consensus 158 vs~aCas~~~Ai~~A~~~ir~G~~d~~lvgg~d~-~~~~~~~~f~~~~~ls~~~~~~p~~~~rPFd~~r~G~v~gEGaa~ 236 (406)
T PRK07967 158 ISSACATSAHCIGNAVEQIQLGKQDIVFAGGGEE-LDWEMSCLFDAMGALSTKYNDTPEKASRAYDANRDGFVIAGGGGV 236 (406)
T ss_pred cccHhHHHHHHHHHHHHHHHcCCCCEEEEeeecc-cChHHHHHHHHhhhhccCCCCCCCcCCcCCcCCCCceeeeceEEE
Confidence 9999999999999999999999999999999997 556666779999988764 56688899999999999999999999
Q ss_pred EEecchhHHHhcCCceEEEEEEEEEcCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCcCEEEEccCCCccCCHHHHHH
Q 012221 294 LVMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAGVSPEEVNYINAHATSTLAGDLAEINA 373 (468)
Q Consensus 294 vvL~~~~~A~~~g~~i~a~i~g~~~~~d~~~~~~~~~~~~~~~~~i~~al~~Agl~~~dId~v~~h~~gt~~~D~~E~~a 373 (468)
+|||++++|++||++||++|+|++.++|+++++.| ++.++.++|++||++++ + |||||++|||||+.+|..|.++
T Consensus 237 lvLe~~~~A~~rga~i~a~i~G~g~~~d~~~~~~p--~~~~~~~a~~~Al~~~~--~-~Idyi~aHgtGT~~~D~~E~~A 311 (406)
T PRK07967 237 VVVEELEHALARGAKIYAEIVGYGATSDGYDMVAP--SGEGAVRCMQMALATVD--T-PIDYINTHGTSTPVGDVKELGA 311 (406)
T ss_pred EEEeeHHHHHhCCCcEEEEEEEEEECCCCCCCCCC--CHHHHHHHHHHHHhCCC--C-CccEEEcCCCCCCCCCHHHHHH
Confidence 99999999999999999999999999999998776 68889999999998654 5 9999999999999999999999
Q ss_pred HHHHhccCCCceeeecccccCccccchhHHHHHHHHHHHhcCCcCCCCCCCCCCCCC-CcccccccccccCccEEEEEcc
Q 012221 374 IKKVFKNTTGIKINATKSMIGHCLGAAGGLEAIATVKAITTGWLHPSINQFNPEPSV-EFDTVANKKQQHEVNVAISNSF 452 (468)
Q Consensus 374 l~~~f~~~~~~~v~s~k~~~Gh~~~AsG~~~l~~~~~~l~~~~~pp~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~s~ 452 (468)
|+++|++ ..++|+++|+++||+++|||++++++++++|++++||||+|+++++|++ +++++++..+..+.+++++|||
T Consensus 312 i~~~fg~-~~~~v~s~K~~~GH~~~AaG~~e~i~~~lal~~~~iPpt~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~sf 390 (406)
T PRK07967 312 IREVFGD-KSPAISATKSLTGHSLGAAGVQEAIYSLLMMEHGFIAPSANIEELDPQAAGMPIVTETTDNAELTTVMSNSF 390 (406)
T ss_pred HHHHhCC-CCCeeECcccccccCccccchHHHHHHHHHHhcCcCCCCCCCCCCCccccCCCccCCCCcCCCCCEEEEecc
Confidence 9999986 3578999999999999999999999999999999999999999999998 5777776666667899999999
Q ss_pred cccCeeeEEEEeecC
Q 012221 453 GFGGHNSVVAFSAFK 467 (468)
Q Consensus 453 g~gG~n~~~vl~~~~ 467 (468)
||||+|+|+||+++.
T Consensus 391 gfGG~n~~lvl~~~~ 405 (406)
T PRK07967 391 GFGGTNATLVFRRYK 405 (406)
T ss_pred cCCCeeEEEEEEecC
Confidence 999999999999974
|
|
| >PRK07314 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-80 Score=626.04 Aligned_cols=410 Identities=49% Similarity=0.831 Sum_probs=389.2
Q ss_pred CCcEEEEeeceeccCCCCHHHHHHHHHcCCCCccccCCCCCCCCCCccccccCCCCCCCCCCccccccCCHHHHHHHHHH
Q 012221 55 KKRVVITGMGLVSVFGNDVDAYYNKLLDGESGITMIDRFDASKFPTRFGGQIRGFSAEGYIDGKNDRRLDDCLRYCIVAG 134 (468)
Q Consensus 55 ~~~V~ItG~g~~~p~g~~~~~~~~~L~~G~~~i~~~~~~~~~~~~~~~~g~v~~~d~~~~i~~~~~~~~d~~~~l~l~a~ 134 (468)
|++|+|||||+++|.|.++++||++|++|+++++++++|+...++..++|.+++||++.++++++.++|||+++|++.++
T Consensus 1 m~~v~ItG~g~~~p~g~~~~~~w~~l~~g~~~~~~~~~~~~~~~~~~~~g~i~~f~~~~~~~~~~~~~~~~~~~l~~~aa 80 (411)
T PRK07314 1 KRRVVVTGLGAVSPLGNDVESTWKNLLAGKSGIGPITHFDTSDLAVKIAGEVKDFNPDDYMSRKEARRMDRFIQYGIAAA 80 (411)
T ss_pred CCcEEEEcceEECCCcCCHHHHHHHHHhCCCcEEECCcccccCCCccEEEEeCCcChhhcCCHHHhhcCCHHHHHHHHHH
Confidence 47899999999999999999999999999999999999998888899999999999998899999999999999999999
Q ss_pred HHHHHHcCCCCccccccccccceEEEeecCCCccchHHHHHHHHHhCCCCcCCcCcchhhhhhhHHHHhhhhCCCCccee
Q 012221 135 KKALEDADLGADISKKIDKERAGVLVGTGMGGLTVFSDGVQALIEKGHRKITPFFIPYAITNMGSALLAIDLGFMGPNYS 214 (468)
Q Consensus 135 ~~AL~dAgl~~~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~ia~~lgl~Gp~~~ 214 (468)
++||+|||+ ++.+++..++||++|++.++....++++..+...+.+.++|+.+++.+.|..++++++.||++||+++
T Consensus 81 ~~Al~dAGl---~~~~~~~~~~gv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~is~~~gl~Gp~~t 157 (411)
T PRK07314 81 KQAVEDAGL---EITEENADRIGVIIGSGIGGLETIEEQHITLLEKGPRRVSPFFVPMAIINMAAGHVSIRYGAKGPNHS 157 (411)
T ss_pred HHHHHHcCC---CcccCCcccEEEEEecCcCChHHHHHHHHHHHhcCccccChhhhhhhcchHHHHHHHHHhCCCCcccc
Confidence 999999999 66678889999999999999888888888888888888899999999999999999999999999999
Q ss_pred ecccChHHHHHHHHHHHHHHhCCCCEEEEEeeccccchhhhhHhhhccccccCCCCCCCCCCCCCCCCCCeeecceeEEE
Q 012221 215 ISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWDKDRDGFVMGEGAGVL 294 (468)
Q Consensus 215 v~~acas~l~Al~~A~~~I~~G~~d~~lvgG~e~~~~p~~~~~~~~~~~l~~~~~~~~~~~rpfd~~~~G~v~gEGaaav 294 (468)
++++|+|++.||..|+++|++|++|++||||+|..++|..+..|..++.++.+..+|...++|||.+++|+++|||++++
T Consensus 158 v~~acaSgl~Al~~A~~~I~~G~~d~vlvgg~~~~~~~~~~~~~~~~~~ls~~~~~p~~~~~pfd~~~dG~~~geGAaav 237 (411)
T PRK07314 158 IVTACATGAHAIGDAARLIAYGDADVMVAGGAEAAITPLGIAGFAAARALSTRNDDPERASRPFDKDRDGFVMGEGAGIL 237 (411)
T ss_pred chhhhHHHHHHHHHHHHHHhcCCCCEEEEeeecccCCHHHHHHHHHhccccCCCCCCCcCcCCCcCCCCCEeEEceEEEE
Confidence 99999999999999999999999999999999998899999999999999876777888999999999999999999999
Q ss_pred EecchhHHHhcCCceEEEEEEEEEcCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCcCEEEEccCCCccCCHHHHHHH
Q 012221 295 VMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAGVSPEEVNYINAHATSTLAGDLAEINAI 374 (468)
Q Consensus 295 vL~~~~~A~~~g~~i~a~i~g~~~~~d~~~~~~~~~~~~~~~~~i~~al~~Agl~~~dId~v~~h~~gt~~~D~~E~~al 374 (468)
||+++++|+++|+++|++|+|++.++|+++++.|.+.+.++.++++++|+++|++++||||||+|||||+.+|..|.++|
T Consensus 238 vL~~~~~A~~~g~~~~a~I~g~~~~~d~~~~~~~~~~~~~~~~a~~~Al~~agi~~~dId~v~~hgtgt~~~d~~E~~al 317 (411)
T PRK07314 238 VLEELEHAKARGAKIYAEVVGYGMTGDAYHMTAPAPDGEGAARAMKLALKDAGINPEDIDYINAHGTSTPAGDKAETQAI 317 (411)
T ss_pred EEeeHHHHHHCCCeEEEEEEEEEEcCCCCCCCCCCCCcHHHHHHHHHHHHHcCCCHHHCCEEEccccCCccccHHHHHHH
Confidence 99999999999999999999999999999988888888889999999999999999999999999999999999999999
Q ss_pred HHHhcc-CCCceeeecccccCccccchhHHHHHHHHHHHhcCCcCCCCCCCCCCCCCCcccccccccccCccEEEEEccc
Q 012221 375 KKVFKN-TTGIKINATKSMIGHCLGAAGGLEAIATVKAITTGWLHPSINQFNPEPSVEFDTVANKKQQHEVNVAISNSFG 453 (468)
Q Consensus 375 ~~~f~~-~~~~~v~s~k~~~Gh~~~AsG~~~l~~~~~~l~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~g 453 (468)
.++|+. ..++++++.|+++||+++|||++++++++++|++++|||++|+++|++.++++.++.+.+..+++++++||||
T Consensus 318 ~~~~~~~~~~~~v~s~k~~~Gh~~~AsG~~~~i~~~l~l~~~~ipp~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~s~g 397 (411)
T PRK07314 318 KRVFGEHAYKVAVSSTKSMTGHLLGAAGAVEAIFSVLAIRDQVIPPTINLDNPDEECDLDYVPNEARERKIDYALSNSFG 397 (411)
T ss_pred HHHhcccCCCCeeECccchhchhHHHHHHHHHHHHHHHHhCCCcCCCCCCCCCCCCCCccccCCcccCCCCCEEEEeccc
Confidence 999985 3569999999999999999999999999999999999999999999999999888877777789999999999
Q ss_pred ccCeeeEEEEeecC
Q 012221 454 FGGHNSVVAFSAFK 467 (468)
Q Consensus 454 ~gG~n~~~vl~~~~ 467 (468)
|||+|+|+||++|.
T Consensus 398 fGG~n~~~vl~~~~ 411 (411)
T PRK07314 398 FGGTNASLVFKRYE 411 (411)
T ss_pred CCCceEEEEEecCC
Confidence 99999999999873
|
|
| >PLN02836 3-oxoacyl-[acyl-carrier-protein] synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-78 Score=614.50 Aligned_cols=408 Identities=41% Similarity=0.685 Sum_probs=368.4
Q ss_pred CCCcEEEEeeceeccCCCCHHHHHHHHHcCCCCccccCCCCC--------------CCCCCccccccC------CCCCCC
Q 012221 54 PKKRVVITGMGLVSVFGNDVDAYYNKLLDGESGITMIDRFDA--------------SKFPTRFGGQIR------GFSAEG 113 (468)
Q Consensus 54 ~~~~V~ItG~g~~~p~g~~~~~~~~~L~~G~~~i~~~~~~~~--------------~~~~~~~~g~v~------~~d~~~ 113 (468)
+.++|||||||+++|+|.++|+||++|++|+++|+++++++. ..++.++++.++ +||+++
T Consensus 4 ~~~~VvItG~g~~~p~g~~~~~~w~~L~~G~s~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~~~ 83 (437)
T PLN02836 4 PTRRVVVTGLGLVTPLGCGVETTWRRLIAGECGVRALTQDDLKMKSEDEETQLYTLDQLPSRVAALVPRGTGPGDFDEEL 83 (437)
T ss_pred CCCCEEEEeeeEECCCCCCHHHHHHHHHcCCCccccCChhhhccccccccccccccccCCccEEEEeccccccccCChHH
Confidence 467899999999999999999999999999999999976542 345677788775 466665
Q ss_pred CCCccccccCCHHHHHHHHHHHHHHHHcCCCCcccc-ccccccceEEEeecCCCccchHHHHHHHHHhCCCCcCCcCcch
Q 012221 114 YIDGKNDRRLDDCLRYCIVAGKKALEDADLGADISK-KIDKERAGVLVGTGMGGLTVFSDGVQALIEKGHRKITPFFIPY 192 (468)
Q Consensus 114 ~i~~~~~~~~d~~~~l~l~a~~~AL~dAgl~~~~~~-~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (468)
+.. .+++++..+|++.++++||+|||+. +. ..+..++||++|++.+.+..+.++.+.+.+.+.+.++|+.++.
T Consensus 84 ~~~---~~~~~~~~~~~~~aa~~Al~dAg~~---~~~~~~~~~~Gv~~Gt~~g~~~~~~~~~~~~~~~~~~~~~p~~~~~ 157 (437)
T PLN02836 84 WLN---SRSSSRFIGYALCAADEALSDARWL---PSEDEAKERTGVSIGGGIGSITDILEAAQLICEKRLRRLSPFFVPR 157 (437)
T ss_pred hcc---ccccCHHHHHHHHHHHHHHHHcCCC---cccccCCcCEEEEEeeccCcHHHHHHHHHHHHhcCCCCCChhhhhh
Confidence 532 4679999999999999999999993 32 2456799999999998887777777667777778899999999
Q ss_pred hhhhhhHHHHhhhhCCCCcceeecccChHHHHHHHHHHHHHHhCCCCEEEEEeeccccchhhhhHhhhccccccC-CCCC
Q 012221 193 AITNMGSALLAIDLGFMGPNYSISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAIIPIGLGGFVACRALSQR-NDDP 271 (468)
Q Consensus 193 ~~~n~~a~~ia~~lgl~Gp~~~v~~acas~l~Al~~A~~~I~~G~~d~~lvgG~e~~~~p~~~~~~~~~~~l~~~-~~~~ 271 (468)
.+.|+++++|++.||++||+++|+++|+|++.||+.|+++|++|++|++||||+|..+++..+..|..++.++.. +.+|
T Consensus 158 ~~~n~~a~~is~~~gl~Gp~~tv~~acaSg~~Al~~A~~~I~~G~~d~~lvgg~~~~~~~~~~~~~~~~~~l~~~~~~~p 237 (437)
T PLN02836 158 ILINMAAGHVSIRYGFQGPNHAAVTACATGAHSIGDAFRMIQFGDADVMVAGGTESSIDALSIAGFSRSRALSTKFNSCP 237 (437)
T ss_pred hcccHHHHHHHHHhCCCCceeceeChhHHHHHHHHHHHHHHHcCCCCEEEEccccccCCHHHHHHHHHhhhhhcccCCCc
Confidence 999999999999999999999999999999999999999999999999999999998899999999998888754 4557
Q ss_pred CCCCCCCCCCCCCeeecceeEEEEecchhHHHhcCCceEEEEEEEEEcCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCC
Q 012221 272 QTASRPWDKDRDGFVMGEGAGVLVMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAGVSPE 351 (468)
Q Consensus 272 ~~~~rpfd~~~~G~v~gEGaaavvL~~~~~A~~~g~~i~a~i~g~~~~~d~~~~~~~~~~~~~~~~~i~~al~~Agl~~~ 351 (468)
+..|||||.+++|+++|||++++|||++++|+++|+++|++|+|++.++|+.+++.|++++.+..++|++||++|||+|+
T Consensus 238 ~~~~~pfd~~~~G~~~gEGaaalVLe~~~~A~~~g~~i~a~I~g~~~~~d~~~~~~p~~~~~~~~~a~~~Al~~Agi~~~ 317 (437)
T PLN02836 238 TEASRPFDCDRDGFVIGEGAGVLVLEELEHAKRRGAKIYAEVRGYGMSGDAHHITQPHEDGRGAVLAMTRALQQSGLHPN 317 (437)
T ss_pred ccccCCcccCCCCeeeecCEEEEEEeeHHHHHHCCCceEEEEEeeeecCCCCCCcCCCcchHHHHHHHHHHHHHcCCCHh
Confidence 78899999999999999999999999999999999999999999999999999999988899999999999999999999
Q ss_pred CcCEEEEccCCCccCCHHHHHHHHHHhccC---CCceeeecccccCccccchhHHHHHHHHHHHhcCCcCCCCCCCCCCC
Q 012221 352 EVNYINAHATSTLAGDLAEINAIKKVFKNT---TGIKINATKSMIGHCLGAAGGLEAIATVKAITTGWLHPSINQFNPEP 428 (468)
Q Consensus 352 dId~v~~h~~gt~~~D~~E~~al~~~f~~~---~~~~v~s~k~~~Gh~~~AsG~~~l~~~~~~l~~~~~pp~~~~~~~~~ 428 (468)
||||||+|||||+.+|..|.++++++|+.. ..++|++.|+++||+++|||++++++++++|++++||||+|+++|+|
T Consensus 318 dId~ve~hgtgt~~~D~~E~~ai~~~~~~~~~~~~~~v~s~K~~~GH~~~AsG~~~li~~~l~l~~~~ipp~~n~~~~~p 397 (437)
T PLN02836 318 QVDYVNAHATSTPLGDAVEARAIKTVFSEHATSGGLAFSSTKGATGHLLGAAGAVEAIFSVLAIHHGIAPPTLNLERPDP 397 (437)
T ss_pred HcCEEEccCCcCcCcCHHHHHHHHHHhcccccCCCCeeECCcccccccHHHHHHHHHHHHHHHHhcCccCCCCCCCCCCC
Confidence 999999999999999999999999999873 35899999999999999999999999999999999999999999999
Q ss_pred CCCcccccccc-cccCccEEEEEcccccCeeeEEEEeecC
Q 012221 429 SVEFDTVANKK-QQHEVNVAISNSFGFGGHNSVVAFSAFK 467 (468)
Q Consensus 429 ~~~~~~~~~~~-~~~~~~~~l~~s~g~gG~n~~~vl~~~~ 467 (468)
.|++++++... +..+.+++++|||||||+|+|+||++++
T Consensus 398 ~~~~~~~~~~~~~~~~~~~~l~nsfgfGG~na~lvl~~~~ 437 (437)
T PLN02836 398 IFDDGFVPLTASKAMLIRAALSNSFGFGGTNASLLFTSPP 437 (437)
T ss_pred CCCcccCcccCCCCCCccEEEEecccCCCeeEEEEEecCC
Confidence 99988876543 3457899999999999999999999875
|
|
| >TIGR03150 fabF beta-ketoacyl-acyl-carrier-protein synthase II | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-77 Score=608.13 Aligned_cols=406 Identities=50% Similarity=0.868 Sum_probs=385.3
Q ss_pred CcEEEEeeceeccCCCCHHHHHHHHHcCCCCccccCCCCCCCCCCccccccCCCCCCCCCCccccccCCHHHHHHHHHHH
Q 012221 56 KRVVITGMGLVSVFGNDVDAYYNKLLDGESGITMIDRFDASKFPTRFGGQIRGFSAEGYIDGKNDRRLDDCLRYCIVAGK 135 (468)
Q Consensus 56 ~~V~ItG~g~~~p~g~~~~~~~~~L~~G~~~i~~~~~~~~~~~~~~~~g~v~~~d~~~~i~~~~~~~~d~~~~l~l~a~~ 135 (468)
++|+|||||+++|.|.+.++||++|++|+++++++++|+...++.+++|.+++||+++++++++.++||++++|++++++
T Consensus 1 ~~v~ItG~g~~~p~g~~~~~~~~~l~~g~s~~~~~~~~~~~~~~~~~~g~i~~f~~~~~~~~~~~~~~~~~~~l~~~aa~ 80 (407)
T TIGR03150 1 RRVVVTGLGAVTPLGNGVEEFWENLLAGKSGIGPITRFDASDLPVKIAGEVKDFDPEDYIDKKEARRMDRFIQYALAAAK 80 (407)
T ss_pred CcEEEEcceEECCCcCCHHHHHHHHHcCCCeeEECCcccccCCCCcEEEEeCCcChhhcCCHHHHhhcCHHHHHHHHHHH
Confidence 48999999999999999999999999999999999999988889999999999999988999999999999999999999
Q ss_pred HHHHHcCCCCccccccccccceEEEeecCCCccchHHHHHHHHHhCCCCcCCcCcchhhhhhhHHHHhhhhCCCCcceee
Q 012221 136 KALEDADLGADISKKIDKERAGVLVGTGMGGLTVFSDGVQALIEKGHRKITPFFIPYAITNMGSALLAIDLGFMGPNYSI 215 (468)
Q Consensus 136 ~AL~dAgl~~~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~ia~~lgl~Gp~~~v 215 (468)
+||+|||+ .+++++..++|+++|++.+++...+.++..+.+.+...++|+.++..+.|.+++++++.||++||+++|
T Consensus 81 ~Al~dAgl---~~~~~~~~~~gv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~is~~~gl~g~~~~v 157 (407)
T TIGR03150 81 EAVEDSGL---DIEEEDAERVGVIIGSGIGGLETIEEQHIVLLEKGPRRVSPFFIPMSIINMAAGQISIRYGAKGPNHAV 157 (407)
T ss_pred HHHHhcCC---CcccCCccceEEEEecCCCchHHHHHHHHHHHhcCccccChhhhhcccccHHHHHHHHHhCCCCccccc
Confidence 99999999 667788899999999999998888888888888888889999999999999999999999999999999
Q ss_pred cccChHHHHHHHHHHHHHHhCCCCEEEEEeeccccchhhhhHhhhccccccCCCCCCCCCCCCCCCCCCeeecceeEEEE
Q 012221 216 STACATSNYCFYAAANHIRRGEADLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWDKDRDGFVMGEGAGVLV 295 (468)
Q Consensus 216 ~~acas~l~Al~~A~~~I~~G~~d~~lvgG~e~~~~p~~~~~~~~~~~l~~~~~~~~~~~rpfd~~~~G~v~gEGaaavv 295 (468)
+++|+|++.||++|+++|++|++|++||||+|..++|..+..|...+.++..+..|...++|||.+++|+++|||++++|
T Consensus 158 ~~acaSg~~Al~~A~~~I~~G~~d~~lvgg~e~~~~~~~~~~~~~~~~ls~~~~~~~~~~~pfd~~~~g~~~gEGAaalv 237 (407)
T TIGR03150 158 VTACATGTHAIGDAFRLIQRGDADVMIAGGAEAAITPLGIAGFAAMKALSTRNDDPEKASRPFDKDRDGFVMGEGAGVLV 237 (407)
T ss_pred ccHHHHHHHHHHHHHHHHhcCCCCEEEEecccCcCCHHHHHHHHHhCcccCCCCCCCcCCCCCcCCCCcEEEeceEEEEE
Confidence 99999999999999999999999999999999989999999999999998777777888999999999999999999999
Q ss_pred ecchhHHHhcCCceEEEEEEEEEcCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCcCEEEEccCCCccCCHHHHHHHH
Q 012221 296 MESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAGVSPEEVNYINAHATSTLAGDLAEINAIK 375 (468)
Q Consensus 296 L~~~~~A~~~g~~i~a~i~g~~~~~d~~~~~~~~~~~~~~~~~i~~al~~Agl~~~dId~v~~h~~gt~~~D~~E~~al~ 375 (468)
|+++++|+++|+++|++|+|++.++|+++.+.|.+.+.++.++++++|+++|++++||||||+|++||+.+|..|..++.
T Consensus 238 L~~~~~A~~~g~~i~a~i~g~~~~~d~~~~~~~~~~~~~~~~ai~~Al~~Agi~~~dId~ve~h~tgt~~~D~~E~~a~~ 317 (407)
T TIGR03150 238 LEELEHAKARGAKIYAEIVGYGMSGDAYHITAPAPEGEGAARAMRAALKDAGINPEDVDYINAHGTSTPLGDKAETKAIK 317 (407)
T ss_pred EeeHHHHHHCCCeEEEEEEEEEECCCCCCCCCCCCCcHHHHHHHHHHHHHcCCCHhHCCEEeCcCCCCCCCCHHHHHHHH
Confidence 99999999999999999999999999998888888888899999999999999999999999999999999999999999
Q ss_pred HHhccC-CCceeeecccccCccccchhHHHHHHHHHHHhcCCcCCCCCCCCCCCCCCcccccccccccCccEEEEEcccc
Q 012221 376 KVFKNT-TGIKINATKSMIGHCLGAAGGLEAIATVKAITTGWLHPSINQFNPEPSVEFDTVANKKQQHEVNVAISNSFGF 454 (468)
Q Consensus 376 ~~f~~~-~~~~v~s~k~~~Gh~~~AsG~~~l~~~~~~l~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~g~ 454 (468)
++|+.. .+++|++.|+++||+++|||++++++++++|++++|||++|+++|++.+++++++.+.+.++++++++|||||
T Consensus 318 ~~~~~~~~~~~v~s~k~~~Gh~~~AsG~~~~~~~~~~l~~~~ipp~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~s~gf 397 (407)
T TIGR03150 318 RVFGDHAYKLAVSSTKSMTGHLLGAAGAIEAIFTVLAIRDGVVPPTINLDNPDPECDLDYVPNEARERKIDYALSNSFGF 397 (407)
T ss_pred HHhccCCCCCceeCCcchhchhHHHHHHHHHHHHHHHHhcCCcCCCCCCCCCCCCCCccccCCCCccCCcCEEEEecccC
Confidence 999863 4699999999999999999999999999999999999999999999999999988777777889999999999
Q ss_pred cCeeeEEEEe
Q 012221 455 GGHNSVVAFS 464 (468)
Q Consensus 455 gG~n~~~vl~ 464 (468)
||+|+|+||+
T Consensus 398 gG~n~~~vl~ 407 (407)
T TIGR03150 398 GGHNASLVFK 407 (407)
T ss_pred CCceEEEEeC
Confidence 9999999984
|
FabB sequences should fall well below the noise cutoff of this model. |
| >TIGR02813 omega_3_PfaA polyketide-type polyunsaturated fatty acid synthase PfaA | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-76 Score=680.93 Aligned_cols=405 Identities=25% Similarity=0.385 Sum_probs=355.0
Q ss_pred CCcEEEEeeceeccCCCCHHHHHHHHHcCCCCccccC--CCCCCC-----------CCCccccccC--CCCCCCC-CCcc
Q 012221 55 KKRVVITGMGLVSVFGNDVDAYYNKLLDGESGITMID--RFDASK-----------FPTRFGGQIR--GFSAEGY-IDGK 118 (468)
Q Consensus 55 ~~~V~ItG~g~~~p~g~~~~~~~~~L~~G~~~i~~~~--~~~~~~-----------~~~~~~g~v~--~~d~~~~-i~~~ 118 (468)
.++|+||||||++|.+.++++||++|.+|+++|++++ ||+... .+++++|+++ +||+.+| |+++
T Consensus 6 ~~~IAIvGmg~~~P~a~~~~~fW~~L~~G~~~i~~ip~~rw~~~~~~~~~~~~~~~~~~~~ggfl~~v~FD~~~F~i~p~ 85 (2582)
T TIGR02813 6 DMPIAIVGMASIFANSRYLNKFWDLIFEKIDAITDVPSDHWAKDDYYDSDKSEADKSYCKRGGFLPEVDFNPMEFGLPPN 85 (2582)
T ss_pred CCCEEEEeeeeeCCCCCCHHHHHHHHHcCCCccCCCChhhCChhhccCccccccCCcccceeEecCccCCCHhhcCCCHH
Confidence 4679999999999999999999999999999999884 676543 3567889887 5888777 9999
Q ss_pred ccccCCHHHHHHHHHHHHHHHHcCCCCccccccccccceEEEeecCCCccchH---------------------HHHHHH
Q 012221 119 NDRRLDDCLRYCIVAGKKALEDADLGADISKKIDKERAGVLVGTGMGGLTVFS---------------------DGVQAL 177 (468)
Q Consensus 119 ~~~~~d~~~~l~l~a~~~AL~dAgl~~~~~~~~~~~~~gv~~g~~~g~~~~~~---------------------~~~~~~ 177 (468)
+++.|||+++|+++++++||+|||+. . .++++|+|||+|++.+...... ...+.+
T Consensus 86 ea~~mDpqqrl~L~~a~eALedAG~~---~-~~~~~r~GV~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (2582)
T TIGR02813 86 ILELTDISQLLSLVVAKEVLNDAGLP---D-GYDRDKIGITLGVGGGQKQSSSLNARLQYPVLKKVFKASGVEDEDSEML 161 (2582)
T ss_pred HHHhcCHHHHHHHHHHHHHHHhCCCC---C-CCCCCCEEEEEEECCCcccchhhhhhhcchhhhhhhhccccchhhHHHh
Confidence 99999999999999999999999993 2 3678899999999876532110 011111
Q ss_pred HH---hCCCCcCCcCcchhhhhhhHHHHhhhhCCCCcceeecccChHHHHHHHHHHHHHHhCCCCEEEEEeeccccchhh
Q 012221 178 IE---KGHRKITPFFIPYAITNMGSALLAIDLGFMGPNYSISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAIIPIG 254 (468)
Q Consensus 178 ~~---~~~~~~~~~~~~~~~~n~~a~~ia~~lgl~Gp~~~v~~acas~l~Al~~A~~~I~~G~~d~~lvgG~e~~~~p~~ 254 (468)
.. ..+..+.+..+++.+.|+++++|++.|||+||+++|+++|+||+.||++|+++|++|+||++||||++..++|..
T Consensus 162 ~~~~~~~~~~~~~~~~~g~~~n~~A~RIS~~f~L~Gps~tVdtACsSSL~Al~~A~~~L~~G~~D~alvGGv~~~~~p~~ 241 (2582)
T TIGR02813 162 IKKFQDQYIHWEENSFPGSLGNVISGRIANRFDLGGMNCVVDAACAGSLAAIRMALSELLEGRSEMMITGGVCTDNSPFM 241 (2582)
T ss_pred hhhhcccccccCccccccccccHHHHHHHHHhCCCCCcccccchhHHHHHHHHHHHHHHHcCCCCEEEEecceeeCCHHH
Confidence 11 122345667789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHhhhccccccCCCCCCCCCCCCCCCCCCeeecceeEEEEecchhHHHhcCCceEEEEEEEEEcCCCCCCCCCCCChHH
Q 012221 255 LGGFVACRALSQRNDDPQTASRPWDKDRDGFVMGEGAGVLVMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLG 334 (468)
Q Consensus 255 ~~~~~~~~~l~~~~~~~~~~~rpfd~~~~G~v~gEGaaavvL~~~~~A~~~g~~i~a~i~g~~~~~d~~~~~~~~~~~~~ 334 (468)
+..|.+.+.|+. ++.|||||.++|||++|||+++||||++++|+++|++||++|+|++.++||+......|+..+
T Consensus 242 ~~~fs~~~~lS~-----~g~crpFD~~adG~v~GEGag~vvLkrL~dA~~dGd~IyAvI~G~g~~~DG~~~~itaP~~~g 316 (2582)
T TIGR02813 242 YMSFSKTPAFTT-----NEDIQPFDIDSKGMMIGEGIGMMALKRLEDAERDGDRIYAVIKGVGASSDGKFKSIYAPRPEG 316 (2582)
T ss_pred HHHHHhccCcCC-----CCCccCCCCCCCcccccceEEEEEeCcHHHHHhCCCcEEEEEEEEEEcCCCCCCCCcCCCHHH
Confidence 999999999984 577999999999999999999999999999999999999999999999999843333445667
Q ss_pred HHHHHHHHHHHcCCCCCCcCEEEEccCCCccCCHHHHHHHHHHhccC----CCceeeecccccCccccchhHHHHHHHHH
Q 012221 335 VSSCIESSLEDAGVSPEEVNYINAHATSTLAGDLAEINAIKKVFKNT----TGIKINATKSMIGHCLGAAGGLEAIATVK 410 (468)
Q Consensus 335 ~~~~i~~al~~Agl~~~dId~v~~h~~gt~~~D~~E~~al~~~f~~~----~~~~v~s~k~~~Gh~~~AsG~~~l~~~~~ 410 (468)
+.++|++||++||++|+||+|||+|||||+.||++|.++|+++|+.. .+++|+|+|++|||+++|||+++++++++
T Consensus 317 q~~~i~~Al~~Agi~p~~I~yIeaHGTGT~~gD~~E~~Al~~vf~~~~~~~~~~~vgSvKs~iGH~~~AAG~a~lik~~l 396 (2582)
T TIGR02813 317 QAKALKRAYDDAGFAPHTCGLIEAHGTGTAAGDVAEFGGLVSVFSQDNDQKQHIALGSVKSQIGHTKSTAGTAGMIKAVL 396 (2582)
T ss_pred HHHHHHHHHHHcCCCHHHCCEEEecCCCCCCCCHHHHHHHHHHhcccccCCCCceeeccccccccchHhHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999862 46899999999999999999999999999
Q ss_pred HHhcCCcCCCCCCCCCCCCCCcc----ccccccccc------CccEEEEEcccccCeeeEEEEeecCC
Q 012221 411 AITTGWLHPSINQFNPEPSVEFD----TVANKKQQH------EVNVAISNSFGFGGHNSVVAFSAFKP 468 (468)
Q Consensus 411 ~l~~~~~pp~~~~~~~~~~~~~~----~~~~~~~~~------~~~~~l~~s~g~gG~n~~~vl~~~~~ 468 (468)
+|++++|||++|+++|+|.++++ +++.+.++| .+|++++|||||||+|+|+||++++|
T Consensus 397 al~~~~iPp~~~~~~pnp~~~~~~~~~~v~~~~~pw~~~~~~~~r~a~vnsfGfGGtN~hvvlee~~~ 464 (2582)
T TIGR02813 397 ALHHKVLPPTINVDQPNPKLDIENSPFYLNTETRPWMQREDGTPRRAGISSFGFGGTNFHMVLEEYSP 464 (2582)
T ss_pred HHhcCCcCCCCCCCCCCCCCCccccceeecCCcccCcccCCCCccEEEEeCccCCCeeEEEEEeecCc
Confidence 99999999999999999999876 345554444 36899999999999999999999853
|
Members of the seed for this alignment are involved in omega-3 polyunsaturated fatty acid biosynthesis, such as the protein PfaA from the eicosapentaenoic acid biosynthesis operon in Photobacterium profundum strain SS9. PfaA is encoded together with PfaB, PfaC, and PfaD, and the functions of the individual polypeptides have not yet been described. More distant homologs of PfaA, also included with the reach of this model, appear to be involved in polyketide-like biosynthetic mechanisms of polyunsaturated fatty acid biosynthesis, an alternative to the more familiar iterated mechanism of chain extension and desaturation, and in most cases are encoded near genes for homologs of PfaB, PfaC, and/or PfaD. |
| >PTZ00050 3-oxoacyl-acyl carrier protein synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-74 Score=584.81 Aligned_cols=396 Identities=41% Similarity=0.737 Sum_probs=362.8
Q ss_pred eeccCCCCHHHHHHHHHcCCCCccccCCCC----------------CCCCCCccccccC--CCCCCCCCCccccccCCHH
Q 012221 65 LVSVFGNDVDAYYNKLLDGESGITMIDRFD----------------ASKFPTRFGGQIR--GFSAEGYIDGKNDRRLDDC 126 (468)
Q Consensus 65 ~~~p~g~~~~~~~~~L~~G~~~i~~~~~~~----------------~~~~~~~~~g~v~--~~d~~~~i~~~~~~~~d~~ 126 (468)
+++|.|.++|+||++|++|+++|+++++|+ ...++++++|+|+ +|++++|.. .++.+++
T Consensus 1 ~vs~~G~~~~~~w~~L~~G~s~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~f~~~~~~~---~~~~~~~ 77 (421)
T PTZ00050 1 VVTPLGVGAESTWEALIAGKSGIRKLTEFPKFLPDCIPEQKALENLVAAMPCQIAAEVDQSEFDPSDFAP---TKRESRA 77 (421)
T ss_pred CCCCCcCCHHHHHHHHHcCCCeeecCCchhhcccccccccccccccccCCCCceEEECCcccCChhHcCC---cccCCHH
Confidence 479999999999999999999999998776 5567888999997 577765532 2246999
Q ss_pred HHHHHHHHHHHHHHcCCCCcc-ccccccccceEEEeecCCCccchHHHHHHHHHhCCCCcCCcCcchhhhhhhHHHHhhh
Q 012221 127 LRYCIVAGKKALEDADLGADI-SKKIDKERAGVLVGTGMGGLTVFSDGVQALIEKGHRKITPFFIPYAITNMGSALLAID 205 (468)
Q Consensus 127 ~~l~l~a~~~AL~dAgl~~~~-~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~ia~~ 205 (468)
++|++.++++||+|||+ . +.+++..++|+++|++.+++......+..+.+.+.+.++|+.++..+.|.++++|++.
T Consensus 78 ~~l~~~aa~~Al~dAGl---~~~~~~~~~~~Gv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~is~~ 154 (421)
T PTZ00050 78 THFAMAAAREALADAKL---DILSEKDQERIGVNIGSGIGSLADLTDEMKTLYEKGHSRVSPYFIPKILGNMAAGLVAIK 154 (421)
T ss_pred HHHHHHHHHHHHHHcCC---CcccccCcccEEEEEccCcccHHHHHHHHHHHHhcCcCcCCHHHHHhhhhhHHHHHHHHH
Confidence 99999999999999999 4 4567778999999999988877777777777788888999999999999999999999
Q ss_pred hCCCCcceeecccChHHHHHHHHHHHHHHhCCCCEEEEEeeccccchhhhhHhhhccccccC-CCCCCCCCCCCCCCCCC
Q 012221 206 LGFMGPNYSISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAIIPIGLGGFVACRALSQR-NDDPQTASRPWDKDRDG 284 (468)
Q Consensus 206 lgl~Gp~~~v~~acas~l~Al~~A~~~I~~G~~d~~lvgG~e~~~~p~~~~~~~~~~~l~~~-~~~~~~~~rpfd~~~~G 284 (468)
|||+||+++|+++|+||+.||.+|+++|++|++|++||||+|..++|..+..|..++.++.. +.+|+..|||||++++|
T Consensus 155 ~~l~Gp~~ti~~aCaSg~~Al~~A~~~I~~G~~d~~lvgG~e~~~~p~~~~~f~~~~~l~~~~~~~p~~~~~pfd~~~~G 234 (421)
T PTZ00050 155 HKLKGPSGSAVTACATGAHCIGEAFRWIKYGEADIMICGGTEASITPVSFAGFSRMRALCTKYNDDPQRASRPFDKDRAG 234 (421)
T ss_pred hCCCCcccccccHhHHHHHHHHHHHHHHHcCCCCEEEECcccccCCHHHHHHHHhhhccccCcCCCCCccCCCCcCCCCC
Confidence 99999999999999999999999999999999999999999998899999999999988754 45677899999999999
Q ss_pred eeecceeEEEEecchhHHHhcCCceEEEEEEEEEcCCCCCCCCCCCChHHHHHHHHHHHHH-cCCCCCCcCEEEEccCCC
Q 012221 285 FVMGEGAGVLVMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLED-AGVSPEEVNYINAHATST 363 (468)
Q Consensus 285 ~v~gEGaaavvL~~~~~A~~~g~~i~a~i~g~~~~~d~~~~~~~~~~~~~~~~~i~~al~~-Agl~~~dId~v~~h~~gt 363 (468)
+++||||+++|||++++|+++|++||++|+|++.++|+++++.|.+++.++.++|++||++ ||++|+||||||+|||||
T Consensus 235 ~~~gEGAaalvLe~~~~A~~~g~~i~a~i~g~~~~~d~~~~~~p~~~~~~~~~ai~~Al~~~Agi~~~dId~ie~hgtgt 314 (421)
T PTZ00050 235 FVMGEGAGILVLEELEHALRRGAKIYAEIRGYGSSSDAHHITAPHPDGRGARRCMENALKDGANININDVDYVNAHATST 314 (421)
T ss_pred EeeccceEEEEEeeHHHHHHCCCeEEEEEEEEEEcCCCCCCCCCCCChHHHHHHHHHHHHhccCCChhhCCEEECCCccC
Confidence 9999999999999999999999999999999999999999999999999999999999999 999999999999999999
Q ss_pred ccCCHHHHHHHHHHhccC--CCceeeecccccCccccchhHHHHHHHHHHHhcCCcCCCCCCCCCCCCCCcccccccccc
Q 012221 364 LAGDLAEINAIKKVFKNT--TGIKINATKSMIGHCLGAAGGLEAIATVKAITTGWLHPSINQFNPEPSVEFDTVANKKQQ 441 (468)
Q Consensus 364 ~~~D~~E~~al~~~f~~~--~~~~v~s~k~~~Gh~~~AsG~~~l~~~~~~l~~~~~pp~~~~~~~~~~~~~~~~~~~~~~ 441 (468)
+.+|.+|.+++.++|+.. .+++|+++|+++||+++|||++++++++++|++++|||++|+++|++.+++++++.....
T Consensus 315 ~~~D~~E~~al~~~~~~~~~~~~~v~s~K~~~GH~~~AaG~~~l~~~~l~l~~~~ipp~~~~~~~~~~~~l~~~~~~~~~ 394 (421)
T PTZ00050 315 PIGDKIELKAIKKVFGDSGAPKLYVSSTKGGLGHLLGAAGAVESIVTILSLYEQIIPPTINLENPDAECDLNLVQGKTAH 394 (421)
T ss_pred CCCCHHHHHHHHHHhccccCCCceEECccccccccHHHHHHHHHHHHHHHHHcCccCCCCCCCCCCCCCCccccCCcccC
Confidence 999999999999999873 479999999999999999999999999999999999999999999999998888766543
Q ss_pred --cCccEEEEEcccccCeeeEEEEeec
Q 012221 442 --HEVNVAISNSFGFGGHNSVVAFSAF 466 (468)
Q Consensus 442 --~~~~~~l~~s~g~gG~n~~~vl~~~ 466 (468)
.+++++++|||||||+|+|+||+++
T Consensus 395 ~~~~~~~~l~nsfgfgG~n~~lvl~~~ 421 (421)
T PTZ00050 395 PLQSIDAVLSTSFGFGGVNTALLFTKY 421 (421)
T ss_pred cCCCCCEEEEeeecCCCeeEEEEEeCC
Confidence 2579999999999999999999975
|
|
| >cd00834 KAS_I_II Beta-ketoacyl-acyl carrier protein (ACP) synthase (KAS), type I and II | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-74 Score=585.49 Aligned_cols=405 Identities=52% Similarity=0.875 Sum_probs=384.2
Q ss_pred CcEEEEeeceeccCCCCHHHHHHHHHcCCCCccccCCCCCCCCCCccccccCCCCCCCCCCccccccCCHHHHHHHHHHH
Q 012221 56 KRVVITGMGLVSVFGNDVDAYYNKLLDGESGITMIDRFDASKFPTRFGGQIRGFSAEGYIDGKNDRRLDDCLRYCIVAGK 135 (468)
Q Consensus 56 ~~V~ItG~g~~~p~g~~~~~~~~~L~~G~~~i~~~~~~~~~~~~~~~~g~v~~~d~~~~i~~~~~~~~d~~~~l~l~a~~ 135 (468)
++|+|||||+++|.|.+.++||++|++|+++++++++|+...++..+++++++|+.++++++++.++||++++|++.+++
T Consensus 1 ~~i~I~G~g~~~p~g~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~aa~ 80 (406)
T cd00834 1 RRVVITGLGAVTPLGNGVEEFWEALLAGRSGIRPITRFDASGFPSRIAGEVPDFDPEDYLDRKELRRMDRFAQFALAAAE 80 (406)
T ss_pred CcEEEECcceeCCCcCCHHHHHHHHHcCCCeeEECCcccccCCCccEEEEcCCCChhhcCCHHHhccCCHHHHHHHHHHH
Confidence 47999999999999999999999999999999999988888888899999999998877999999999999999999999
Q ss_pred HHHHHcCCCCccccccccccceEEEeecCCCccchHHHHHHHHHhCCCCcCCcCcchhhhhhhHHHHhhhhCCCCcceee
Q 012221 136 KALEDADLGADISKKIDKERAGVLVGTGMGGLTVFSDGVQALIEKGHRKITPFFIPYAITNMGSALLAIDLGFMGPNYSI 215 (468)
Q Consensus 136 ~AL~dAgl~~~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~ia~~lgl~Gp~~~v 215 (468)
+||+|||+ +..+++..++|+++|++.+++...++++..+...+.+.++|+.++..+.+..+++++..||++||++++
T Consensus 81 ~AL~dAgl---~~~~~~~~~~gv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lgl~g~~~~v 157 (406)
T cd00834 81 EALADAGL---DPEELDPERIGVVIGSGIGGLATIEEAYRALLEKGPRRVSPFFVPMALPNMAAGQVAIRLGLRGPNYTV 157 (406)
T ss_pred HHHHHcCC---CcccCCccceEEEEccCCcchHHHHHHHHHHHhcCCcccChhHHhhhcccHHHHHHHHHhCCCCccccc
Confidence 99999999 666788899999999999999988999998888888889999999999999999999999999999999
Q ss_pred cccChHHHHHHHHHHHHHHhCCCCEEEEEeeccccchhhhhHhhhccccccCCCCCCCCCCCCCCCCCCeeecceeEEEE
Q 012221 216 STACATSNYCFYAAANHIRRGEADLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWDKDRDGFVMGEGAGVLV 295 (468)
Q Consensus 216 ~~acas~l~Al~~A~~~I~~G~~d~~lvgG~e~~~~p~~~~~~~~~~~l~~~~~~~~~~~rpfd~~~~G~v~gEGaaavv 295 (468)
+++|+|++.||+.|+++|++|++|.+||||+|...+|..+..|...+.++.....|...++|||.+++|+++||||+++|
T Consensus 158 ~~acas~~~Al~~A~~~i~~G~~d~aLvgg~d~~~~p~~~~~~~~~~~l~~~~~~p~~~~~pf~~~~~g~~~geGA~a~v 237 (406)
T cd00834 158 STACASGAHAIGDAARLIRLGRADVVIAGGAEALITPLTLAGFAALRALSTRNDDPEKASRPFDKDRDGFVLGEGAGVLV 237 (406)
T ss_pred chHHHHHHHHHHHHHHHHHcCCCCEEEEcCcccccCHHHHHHHHhcCCcCCCCCCCccCCCCCCCCCCCEeeeccEEEEE
Confidence 99999999999999999999999999999999988899999999999998876667788999999999999999999999
Q ss_pred ecchhHHHhcCCceEEEEEEEEEcCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCcCEEEEccCCCccCCHHHHHHHH
Q 012221 296 MESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAGVSPEEVNYINAHATSTLAGDLAEINAIK 375 (468)
Q Consensus 296 L~~~~~A~~~g~~i~a~i~g~~~~~d~~~~~~~~~~~~~~~~~i~~al~~Agl~~~dId~v~~h~~gt~~~D~~E~~al~ 375 (468)
|++.++|+++|+++|++|+|++.++|+.+.+.|.+.+.++.++++++|++++++++|||||++|++||+.+|..|.+++.
T Consensus 238 L~~~~~A~~~g~~~~a~i~g~~~~~d~~~~~~~~~~~~~~~~~i~~al~~agi~~~dId~v~~h~tgt~~~d~~E~~al~ 317 (406)
T cd00834 238 LESLEHAKARGAKIYAEILGYGASSDAYHITAPDPDGEGAARAMRAALADAGLSPEDIDYINAHGTSTPLNDAAESKAIK 317 (406)
T ss_pred EecHHHHHHCCCeEEEEEEEEEecccCCCCCCCCCCcHHHHHHHHHHHHHcCCCHHHCCEEecccccCccccHHHHHHHH
Confidence 99999999999999999999999999999888888889999999999999999999999999999999999999999999
Q ss_pred HHhcc-CCCceeeecccccCccccchhHHHHHHHHHHHhcCCcCCCCCCCCCCCCCCcccccccccccCccEEEEEcccc
Q 012221 376 KVFKN-TTGIKINATKSMIGHCLGAAGGLEAIATVKAITTGWLHPSINQFNPEPSVEFDTVANKKQQHEVNVAISNSFGF 454 (468)
Q Consensus 376 ~~f~~-~~~~~v~s~k~~~Gh~~~AsG~~~l~~~~~~l~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~g~ 454 (468)
++|+. ..+++|++.|+++||+++|||++++++++++|+++++||++|+++|++.+++++++.+.++++.|++++|||||
T Consensus 318 ~~~~~~~~~~~v~s~k~~~Gh~~~AsG~~~l~~~~~~l~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~g~ 397 (406)
T cd00834 318 RVFGEHAKKVPVSSTKSMTGHLLGAAGAVEAIATLLALRDGVLPPTINLEEPDPECDLDYVPNEAREAPIRYALSNSFGF 397 (406)
T ss_pred HHhcccCCCCceeCcchhhccchhhhhHHHHHHHHHHHhcCCcCCCCCCCCCCCCCCccccCCCCccccccEEEEeeecC
Confidence 99987 35799999999999999999999999999999999999999999999988888888777888889999999999
Q ss_pred cCeeeEEEE
Q 012221 455 GGHNSVVAF 463 (468)
Q Consensus 455 gG~n~~~vl 463 (468)
||+|+|+||
T Consensus 398 gG~n~~~vl 406 (406)
T cd00834 398 GGHNASLVF 406 (406)
T ss_pred CceeeEEEC
Confidence 999999996
|
KASs are responsible for the elongation steps in fatty acid biosynthesis. KASIII catalyses the initial condensation and KAS I and II catalyze further elongation steps by Claisen condensation of malonyl-acyl carrier protein (ACP) with acyl-ACP. |
| >PRK07103 polyketide beta-ketoacyl:acyl carrier protein synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-74 Score=579.33 Aligned_cols=399 Identities=30% Similarity=0.429 Sum_probs=352.0
Q ss_pred CCcEEEEeeceeccCCCCHHHHHHHHHcCCCCccccCCCCCC--------CCCCccccccCCCCCCCCCCccccccCCHH
Q 012221 55 KKRVVITGMGLVSVFGNDVDAYYNKLLDGESGITMIDRFDAS--------KFPTRFGGQIRGFSAEGYIDGKNDRRLDDC 126 (468)
Q Consensus 55 ~~~V~ItG~g~~~p~g~~~~~~~~~L~~G~~~i~~~~~~~~~--------~~~~~~~g~v~~~d~~~~i~~~~~~~~d~~ 126 (468)
|++|||||||+++|.|.++++||++|++|+++|+++++|+.. .....+++++++|+.+.+++++..|+|++.
T Consensus 1 m~~VvItG~g~vsp~g~~~~~~w~~l~~g~s~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 80 (410)
T PRK07103 1 MDEVVVTGVGVVSAIGQGRPSFAAALLAGRHAFGVMRRPGRQVPDDAGAGLASAFIGAELDSLALPERLDAKLLRRASLS 80 (410)
T ss_pred CCCEEEEcceEECCCcCCHHHHHHHHHcCCCeEecCCcccccccccccccCCCceEEEEeCCCChhhcCCHHHhhcCCHH
Confidence 478999999999999999999999999999999999887653 335668899999988777888889999999
Q ss_pred HHHHHHHHHHHHHHcCCCCccccccccccceEEEeecCCCccchHHHHHHHHHhCCCCcCCcCcchhhhhhhHHHHhhhh
Q 012221 127 LRYCIVAGKKALEDADLGADISKKIDKERAGVLVGTGMGGLTVFSDGVQALIEKGHRKITPFFIPYAITNMGSALLAIDL 206 (468)
Q Consensus 127 ~~l~l~a~~~AL~dAgl~~~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~ia~~l 206 (468)
++|++.++++||+|||+ . ..+..++||++|++.+........++.+ ......+.|++....+.+.++++|++.|
T Consensus 81 ~~lal~Aa~eAl~dAgl---~--~~~~~riGvivG~~~~~~~~~~~~~~~~-~~~~~~~~p~~~~~~~~~~~a~~ia~~l 154 (410)
T PRK07103 81 AQAALAAAREAWRDAAL---G--PVDPDRIGLVVGGSNLQQREQALVHETY-RDRPAFLRPSYGLSFMDTDLVGLCSEQF 154 (410)
T ss_pred HHHHHHHHHHHHHhcCc---C--CCCCCCEEEEEccCCcchHHHHHHHHHh-ccCccccChhhhhhhcchHHHHHHHHHh
Confidence 99999999999999999 2 3456799999998776655554444443 2345566777777777888999999999
Q ss_pred CCCCcceeecccChHHHHHHHHHHHHHHhCCCCEEEEEeeccccchhhhhHhhhccccccC--CCCCCCCCCCCCCCCCC
Q 012221 207 GFMGPNYSISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAIIPIGLGGFVACRALSQR--NDDPQTASRPWDKDRDG 284 (468)
Q Consensus 207 gl~Gp~~~v~~acas~l~Al~~A~~~I~~G~~d~~lvgG~e~~~~p~~~~~~~~~~~l~~~--~~~~~~~~rpfd~~~~G 284 (468)
|++||+++++++|+|++.||+.|+++|++|++|+|||+|++..+++..+.+|..++.|+.. ..+|...|||||.+++|
T Consensus 155 gl~G~~~tv~~acas~~~Al~~A~~~I~~G~~d~~lv~g~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~rPfd~~~dG 234 (410)
T PRK07103 155 GIRGEGFTVGGASASGQLAVIQAARLVQSGSVDACIAVGALMDLSYWECQALRSLGAMGSDRFADEPEAACRPFDQDRDG 234 (410)
T ss_pred CCCCCcccccchhHHHHHHHHHHHHHHHcCCCCEEEEecccccCCHHHHHHHHHccccccCccCCCcccCcCCCCCCCCC
Confidence 9999999999999999999999999999999999999999988999999999998888754 45678899999999999
Q ss_pred eeecceeEEEEecchhHHHhcCCceEEEEEEEEEcCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCcCEEEEccCCCc
Q 012221 285 FVMGEGAGVLVMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAGVSPEEVNYINAHATSTL 364 (468)
Q Consensus 285 ~v~gEGaaavvL~~~~~A~~~g~~i~a~i~g~~~~~d~~~~~~~~~~~~~~~~~i~~al~~Agl~~~dId~v~~h~~gt~ 364 (468)
+++|||++++|||++++|+++|+++|++|+|++.++|+++.+.| +..++.++|+++|+++|++|+|||||++|||||+
T Consensus 235 ~v~gEGaaalvLe~~~~A~~~g~~i~a~I~g~~~~~d~~~~~~p--~~~~~~~a~~~Al~~Agi~~~dId~v~~hgtgt~ 312 (410)
T PRK07103 235 FIYGEACGAVVLESAESARRRGARPYAKLLGWSMRLDANRGPDP--SLEGEMRVIRAALRRAGLGPEDIDYVNPHGTGSP 312 (410)
T ss_pred eeEeeeEEEEEEccHHHHHHCCCceEEEEEEEEEecCCCCCCCC--CHHHHHHHHHHHHHHcCCCHHHCCEEEccCCCCC
Confidence 99999999999999999999999999999999999999986654 5666789999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHhccCCCceeeecccccCccccchhHHHHHHHHHHHhcCCcCCCCCCCCC-CCCCCcccccccccccC
Q 012221 365 AGDLAEINAIKKVFKNTTGIKINATKSMIGHCLGAAGGLEAIATVKAITTGWLHPSINQFNP-EPSVEFDTVANKKQQHE 443 (468)
Q Consensus 365 ~~D~~E~~al~~~f~~~~~~~v~s~k~~~Gh~~~AsG~~~l~~~~~~l~~~~~pp~~~~~~~-~~~~~~~~~~~~~~~~~ 443 (468)
.+|..|.++|...+ ...++|++.|+++||+++|||++++++++++|++++|||++|+++| ++. +++++...+..+
T Consensus 313 ~~D~~E~~al~~~~--~~~~~v~s~k~~~Gh~~~AsG~~~l~~~~l~l~~~~ipp~~~~~~~~~~~--~~~v~~~~~~~~ 388 (410)
T PRK07103 313 LGDETELAALFASG--LAHAWINATKSLTGHGLSAAGIVELIATLLQMRAGFLHPSRNLDEPIDER--FRWVGSTAESAR 388 (410)
T ss_pred CCCHHHHHHHhcCC--CCCCeEECCCcccccCchhhhHHHHHHHHHHHhCCeeCCCCCCCCCCCCC--cCccCCCCcCCC
Confidence 99999999993322 2468999999999999999999999999999999999999999998 554 455666555667
Q ss_pred ccEEEEEcccccCeeeEEEEee
Q 012221 444 VNVAISNSFGFGGHNSVVAFSA 465 (468)
Q Consensus 444 ~~~~l~~s~g~gG~n~~~vl~~ 465 (468)
.+++++|||||||+|+|+||++
T Consensus 389 ~~~~l~~s~gfGG~n~~~vl~~ 410 (410)
T PRK07103 389 IRYALSLSFGFGGINTALVLER 410 (410)
T ss_pred CCEEEEecccCCCceEEEEEeC
Confidence 8999999999999999999985
|
|
| >COG3321 Polyketide synthase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-74 Score=635.20 Aligned_cols=397 Identities=30% Similarity=0.460 Sum_probs=358.9
Q ss_pred cEEEEeeceeccCCCCHHHHHHHHHcCCCCccccC--CCCCCCC-----------CCccccccCC---CCCCCC-CCccc
Q 012221 57 RVVITGMGLVSVFGNDVDAYYNKLLDGESGITMID--RFDASKF-----------PTRFGGQIRG---FSAEGY-IDGKN 119 (468)
Q Consensus 57 ~V~ItG~g~~~p~g~~~~~~~~~L~~G~~~i~~~~--~~~~~~~-----------~~~~~g~v~~---~d~~~~-i~~~~ 119 (468)
+|+|+||+|++|+..++++||++|.+|+++|++++ ||+...+ ..+++|++++ ||+.|| |+|+|
T Consensus 5 ~IAIiGm~~rfPga~~~~~~W~~l~~g~~~i~~ip~~rwd~~~~~~~~~~~~gk~~~~~ggfl~~~~~FD~~fFgisPrE 84 (1061)
T COG3321 5 PIAIIGMACRFPGADSPEEFWDLLKEGRDEITEVPADRWDVDAYYDPDPTVPGKSYSRWGGFLDDVDDFDALFFGISPRE 84 (1061)
T ss_pred cEEEEeccccCCCCCCHHHHHHHHhcCCceeeecChhhhhHhhccCCccccccccccccccccCCccccCHHHcCCCHHH
Confidence 39999999999999999999999999999999985 5655443 4578888864 999988 99999
Q ss_pred cccCCHHHHHHHHHHHHHHHHcCCCCccccccccccceEEEeecCCCccchHHHHHHHHHhCCCCcCCcCcchhhhhhhH
Q 012221 120 DRRLDDCLRYCIVAGKKALEDADLGADISKKIDKERAGVLVGTGMGGLTVFSDGVQALIEKGHRKITPFFIPYAITNMGS 199 (468)
Q Consensus 120 ~~~~d~~~~l~l~a~~~AL~dAgl~~~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a 199 (468)
+..||||+||+++.+|+||||||+ .+..+.+.++|||+|.+..++....... .. ...++...+...+.++
T Consensus 85 A~~mDPQqRllLe~aw~AlEdAG~---~~~~l~g~~tgV~~g~~~~~y~~~~~~~------~~-~~~~~~~~g~~~~~~a 154 (1061)
T COG3321 85 AEAMDPQQRLLLEVAWEALEDAGI---YPDSLRGSATGVFAGASVADYLLLLLAD------DE-AEPEYAITGNSSSVAA 154 (1061)
T ss_pred HHhcCchHhHHHHHHHHHHHHcCC---CccccCCcceEEEEeeccCccccccccc------cc-cccceecccchhhHHH
Confidence 999999999999999999999999 6677888899999999877665432111 11 4556677777888999
Q ss_pred HHHhhhhCCCCcceeecccChHHHHHHHHHHHHHHhCCCCEEEEEeeccccchhhhhHhhhccccccCCCCCCCCCCCCC
Q 012221 200 ALLAIDLGFMGPNYSISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWD 279 (468)
Q Consensus 200 ~~ia~~lgl~Gp~~~v~~acas~l~Al~~A~~~I~~G~~d~~lvgG~e~~~~p~~~~~~~~~~~l~~~~~~~~~~~rpfd 279 (468)
+|+|+.|+|+||+++|+++|+|+++|+|+||+.|+.|+||++|+||++..++|.....|++.++|+ |++.|++||
T Consensus 155 ~Risy~l~l~GPs~~vdtaCSSsLvAvhlA~~sL~~Ge~d~alaGgv~l~~~p~~~~~~~~~g~ls-----~~g~c~~fd 229 (1061)
T COG3321 155 GRISYVLGLSGPSVTVDTACSSSLVAVHLACQSLRLGECDLALAGGVNLVLSPESSYLFSAGGMLS-----PDGRCKAFD 229 (1061)
T ss_pred HHHHHHhcCCCCCccccchhhHHHHHHHHHHHHHHcCCCCEEEecceEeccCCcceeeeecccCcC-----CCCcceecc
Confidence 999999999999999999999999999999999999999999999999999999999999999998 478999999
Q ss_pred CCCCCeeecceeEEEEecchhHHHhcCCceEEEEEEEEEcCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCcCEEEEc
Q 012221 280 KDRDGFVMGEGAGVLVMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAGVSPEEVNYINAH 359 (468)
Q Consensus 280 ~~~~G~v~gEGaaavvL~~~~~A~~~g~~i~a~i~g~~~~~d~~~~~~~~~~~~~~~~~i~~al~~Agl~~~dId~v~~h 359 (468)
.++|||+.|||++++||+++++|.++|++||++|+|.++++||.......|+..++..++++||+++||+|++|+|||+|
T Consensus 230 ~~adG~v~geG~g~vvLKrl~~A~~dgd~IyavI~gsavn~dG~~~gltaP~~~aQ~~v~~~al~~a~i~p~tv~yvEaH 309 (1061)
T COG3321 230 ADADGYVRGEGAGVVVLKRLSDAERDGDRIYAVIRGSAVNQDGRSNGLTAPNLEAQADVIREALADAGIDPATVQYVEAH 309 (1061)
T ss_pred cCCCCEEEeeeEEEEEEEEhHHHHhCCCeEEEEEEeeeeccCCCcCCCCCCCHHHHHHHHHHHHHhcCCCcccCcEEEec
Confidence 99999999999999999999999999999999999999999997656666677899999999999999999999999999
Q ss_pred cCCCccCCHHHHHHHHHHhcc---CCCceeeecccccCccccchhHHHHHHHHHHHhcCCcCCCCCCCCCCCCCCccc--
Q 012221 360 ATSTLAGDLAEINAIKKVFKN---TTGIKINATKSMIGHCLGAAGGLEAIATVKAITTGWLHPSINQFNPEPSVEFDT-- 434 (468)
Q Consensus 360 ~~gt~~~D~~E~~al~~~f~~---~~~~~v~s~k~~~Gh~~~AsG~~~l~~~~~~l~~~~~pp~~~~~~~~~~~~~~~-- 434 (468)
||||++||++|+++|..+|+. ..+|.++|+|+|+||+..|+|+++++|++++|+|+++||++|+++|+|.+++..
T Consensus 310 gTGT~lGDpiE~~aL~~v~~~~~~~~~c~iGSvKsNiGH~~~AaGiagliK~~Lal~~~~ip~~l~~~~~np~i~~~~sp 389 (1061)
T COG3321 310 GTGTPLGDPIEANALGAVYGEGAPAQPCAIGSVKSNIGHLEAAAGIAGLIKTALALKHGYIPPTLHFDTPNPEIDFDSSP 389 (1061)
T ss_pred CCCCCCcCHHHHHHHHHHhccCCCCCcccccccccccccHHHHHHHHHHHHHHHhhhcCccCCcCCCCCCCcCCccccCC
Confidence 999999999999999999985 457899999999999999999999999999999999999999999999998764
Q ss_pred --cccccccc----CccEEEEEcccccCeeeEEEEeecCC
Q 012221 435 --VANKKQQH----EVNVAISNSFGFGGHNSVVAFSAFKP 468 (468)
Q Consensus 435 --~~~~~~~~----~~~~~l~~s~g~gG~n~~~vl~~~~~ 468 (468)
++.+.++| .+|++.+|||||||+|+|+||++++|
T Consensus 390 ~~v~~~~~~W~~~~~prrAgvssfG~gGtNaHvIlEe~~~ 429 (1061)
T COG3321 390 FVVPTEATPWPTGGGPRRAGVSSFGFGGTNAHVILEEAPP 429 (1061)
T ss_pred eEeecCCcCCCCCCCCceeeeeccCCCCCceEEEEeecCC
Confidence 44444444 47999999999999999999999874
|
|
| >cd00828 elong_cond_enzymes "elongating" condensing enzymes are a subclass of decarboxylating condensing enzymes, including beta-ketoacyl [ACP] synthase, type I and II and polyketide synthases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-73 Score=580.05 Aligned_cols=394 Identities=37% Similarity=0.591 Sum_probs=362.6
Q ss_pred CcEEEEeeceeccCCCC---HHHHHHHHHcCCCCccccCCCCCCCCCCccccccCCCCCCCCCCccccccC---CHHHHH
Q 012221 56 KRVVITGMGLVSVFGND---VDAYYNKLLDGESGITMIDRFDASKFPTRFGGQIRGFSAEGYIDGKNDRRL---DDCLRY 129 (468)
Q Consensus 56 ~~V~ItG~g~~~p~g~~---~~~~~~~L~~G~~~i~~~~~~~~~~~~~~~~g~v~~~d~~~~i~~~~~~~~---d~~~~l 129 (468)
.+|||||||+++|.|.+ .++||++|.+|+++++++++++ ..++..++|++++|+ +++++.+++ |++++|
T Consensus 1 ~~v~ItG~g~v~p~g~~~~~~~~~w~~l~~g~s~i~~~~~~~-~~~~~~~~g~i~~~~----~~~~~~~~~~~~~~~~~l 75 (407)
T cd00828 1 SRVVITGIGVVSPHGEGCDEVEEFWEALREGRSGIAPVARLK-SRFDRGVAGQIPTGD----IPGWDAKRTGIVDRTTLL 75 (407)
T ss_pred CCEEEECceeecCCCCCCCCHHHHHHHHHcCCCceeeCCccc-ccCCccEEEEccCCC----cCHHHHHhccCCCHHHHH
Confidence 47999999999999999 9999999999999999999887 677888999998877 667777888 999999
Q ss_pred HHHHHHHHHHHcCCCCccccc-cccccceEEEeecCCCccchHHHHHHHHHhCCCCcCCcCcchhhh--hhhHHHHhhhh
Q 012221 130 CIVAGKKALEDADLGADISKK-IDKERAGVLVGTGMGGLTVFSDGVQALIEKGHRKITPFFIPYAIT--NMGSALLAIDL 206 (468)
Q Consensus 130 ~l~a~~~AL~dAgl~~~~~~~-~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--n~~a~~ia~~l 206 (468)
++.++++||+|||+ .+++ ++..++|+++|++.+++......+..+. +..+|+.++..+. |.+++++++.|
T Consensus 76 ~~~aa~~Al~dAGl---~~~~~~~~~~~gv~~g~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~a~~is~~~ 148 (407)
T cd00828 76 ALVATEEALADAGI---TDPYEVHPSEVGVVVGSGMGGLRFLRRGGKLDA----RAVNPYVSPKWMLSPNTVAGWVNILL 148 (407)
T ss_pred HHHHHHHHHHhCCC---CccccCCccCeEEEEeeccCCHHHHHHHHHHHh----hccCCcccchhccccchHHHHHHHHh
Confidence 99999999999999 5556 7788999999999988776666554443 4567888888887 99999999999
Q ss_pred CC-CCcceeecccChHHHHHHHHHHHHHHhCCCCEEEEEeeccccchhhhhHhhhccccccCCCCCCCCCCCCCCCCCCe
Q 012221 207 GF-MGPNYSISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWDKDRDGF 285 (468)
Q Consensus 207 gl-~Gp~~~v~~acas~l~Al~~A~~~I~~G~~d~~lvgG~e~~~~p~~~~~~~~~~~l~~~~~~~~~~~rpfd~~~~G~ 285 (468)
|+ +||+++|+++|+|++.||..|+++|++|++|++||||+|... |..+..|..++.++.....|...|+|||.+++|+
T Consensus 149 gl~~Gp~~tv~~aCaS~~~Al~~A~~~I~~G~~d~~lvgg~d~~~-~~~~~~f~~~~~ls~~~~~~~~~~~pfd~~~~G~ 227 (407)
T cd00828 149 LSSHGPIKTPVGACATALEALDLAVEAIRSGKADIVVVGGVEDPL-EEGLSGFANMGALSTAEEEPEEMSRPFDETRDGF 227 (407)
T ss_pred CcCCCCCcCcccHHHHHHHHHHHHHHHHHcCCCCEEEEccccccC-hHHHHHHHHcCCCCCCCCCCCcccCCCcCCCCcE
Confidence 99 999999999999999999999999999999999999999976 8889999999999876666778999999999999
Q ss_pred eecceeEEEEecchhHHHhcCCceEEEEEEEEEcCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCcCEEEEccCCCcc
Q 012221 286 VMGEGAGVLVMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAGVSPEEVNYINAHATSTLA 365 (468)
Q Consensus 286 v~gEGaaavvL~~~~~A~~~g~~i~a~i~g~~~~~d~~~~~~~~~~~~~~~~~i~~al~~Agl~~~dId~v~~h~~gt~~ 365 (468)
++||||+++|||++++|++||+++|++|+|++.++|+++...+. ++.++.++|+++|+++|++|+||||||+|+|||+.
T Consensus 228 ~~gEGAaalvLe~~~~A~~rg~~i~a~i~g~~~~~d~~~~~~~~-~~~~~~~a~~~Al~~Agi~~~dId~i~~hgtgt~~ 306 (407)
T cd00828 228 VEAEGAGVLVLERAELALARGAPIYGRVAGTASTTDGAGRSVPA-GGKGIARAIRTALAKAGLSLDDLDVISAHGTSTPA 306 (407)
T ss_pred EeecceEEEEEeeHHHHHHCCCeEEEEEEEEEeccCCCCCCCCC-ChHHHHHHHHHHHHHcCCCHHHcCEEecccccCcc
Confidence 99999999999999999999999999999999999999887776 78899999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHhccC-CCceeeecccccCccccchhHHHHHHHHHHHhcCCcCCCCCCCCCCCCCCcccccccccccC-
Q 012221 366 GDLAEINAIKKVFKNT-TGIKINATKSMIGHCLGAAGGLEAIATVKAITTGWLHPSINQFNPEPSVEFDTVANKKQQHE- 443 (468)
Q Consensus 366 ~D~~E~~al~~~f~~~-~~~~v~s~k~~~Gh~~~AsG~~~l~~~~~~l~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~- 443 (468)
+|..|.++++++|+.. .+++|++.|+++||+++|||++++++++++|+++++||++|+++|+|.+++++++.+.++++
T Consensus 307 ~D~~E~~ai~~~~~~~~~~~~v~s~K~~~Gh~~~Asg~~~l~~~~~~l~~~~ipp~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (407)
T cd00828 307 NDVAESRAIAEVAGALGAPLPVTAQKALFGHSKGAAGALQLIGALQSLEHGLIPPTANLDDVDPDVEHLSVVGLSRDLNL 386 (407)
T ss_pred ccHHHHHHHHHHHhccCCCceeecccchhccchhhhhHHHHHHHHHHHhcCccCCCCCCCCCCcccccccccCcCccCCC
Confidence 9999999999999873 46899999999999999999999999999999999999999999999999888888777776
Q ss_pred -ccEEEEEcccccCeeeEEEE
Q 012221 444 -VNVAISNSFGFGGHNSVVAF 463 (468)
Q Consensus 444 -~~~~l~~s~g~gG~n~~~vl 463 (468)
.+.+++|||||||+|+|+||
T Consensus 387 ~~~~al~~s~gfgG~n~~lv~ 407 (407)
T cd00828 387 KVRAALVNAFGFGGSNAALVL 407 (407)
T ss_pred CccEEEEecccCCCcceEEEC
Confidence 49999999999999999986
|
They are characterized by the utlization of acyl carrier protein (ACP) thioesters as primer substrates, as well as the nature of their active site residues. |
| >PRK05952 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-73 Score=565.38 Aligned_cols=378 Identities=32% Similarity=0.546 Sum_probs=333.1
Q ss_pred CCcEEEEeeceeccCCCCHHHHHHHHHcCCCCccccCCCCCCCCCCccccccCCCCCCCCCCccccccCCHHHHHHHHHH
Q 012221 55 KKRVVITGMGLVSVFGNDVDAYYNKLLDGESGITMIDRFDASKFPTRFGGQIRGFSAEGYIDGKNDRRLDDCLRYCIVAG 134 (468)
Q Consensus 55 ~~~V~ItG~g~~~p~g~~~~~~~~~L~~G~~~i~~~~~~~~~~~~~~~~g~v~~~d~~~~i~~~~~~~~d~~~~l~l~a~ 134 (468)
|+||||||+|+++|.|. .++||++|++|+++|++++.|+. ++....+.+. ++ ..+++ ++...++
T Consensus 1 ~~rVvITG~G~vsp~G~-~~~~~~~l~~G~sgi~~~~~~~~--~~~~~~~~~~-~~---------~~~~~---~~~~~a~ 64 (381)
T PRK05952 1 MMKVVVTGIGLVSALGD-LEQSWQRLLQGKSGIKLHQPFPE--LPPLPLGLIG-NQ---------PSSLE---DLTKTVV 64 (381)
T ss_pred CCeEEEEeeEEECcccC-HHHHHHHHHcCCCCeEeCCcccc--cccccceeec-cc---------ccccc---HHHHHHH
Confidence 46899999999999999 99999999999999999888752 1111111110 00 01233 3566889
Q ss_pred HHHHHHcCCCCccccccccccceEEEeecCCCccchHHHHHHHHHhCC---CCcCCcCcchhhhhhhHHHHhhhhCCCCc
Q 012221 135 KKALEDADLGADISKKIDKERAGVLVGTGMGGLTVFSDGVQALIEKGH---RKITPFFIPYAITNMGSALLAIDLGFMGP 211 (468)
Q Consensus 135 ~~AL~dAgl~~~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~n~~a~~ia~~lgl~Gp 211 (468)
++||+|+|+. . +..|+||++|++.++...+++++..+.+.+. ..++|..++..++|.+++++++.|+++||
T Consensus 65 ~~Al~dagl~---~---~~~~~Gv~~Gt~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~ia~~~~~~Gp 138 (381)
T PRK05952 65 TAALKDAGLT---P---PLTDCGVVIGSSRGCQGQWEKLARQMYQGDDSPDEELDLENWLDTLPHQAAIAAARQIGTQGP 138 (381)
T ss_pred HHHHHhcCCC---C---CCCCEEEEEeeCcchHHHHHHHHHHHhhcCCccccccCHHHHHHhcccHHHHHHHHHhCCCCc
Confidence 9999999993 2 2468999999999998888877776665443 25678888899999999999999999999
Q ss_pred ceeecccChHHHHHHHHHHHHHHhCCCCEEEEEeeccccchhhhhHhhhccccccCCCCCCCCCCCCCCCCCCeeeccee
Q 012221 212 NYSISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWDKDRDGFVMGEGA 291 (468)
Q Consensus 212 ~~~v~~acas~l~Al~~A~~~I~~G~~d~~lvgG~e~~~~p~~~~~~~~~~~l~~~~~~~~~~~rpfd~~~~G~v~gEGa 291 (468)
++++.++|+|++.||.+|+++|++|++|++||||+|..++|..+..|..++.++. ..|||||.+++|+++|||+
T Consensus 139 ~~ti~~aCasg~~Ai~~A~~~i~~G~~d~~lvgg~d~~~~~~~~~~~~~~~~ls~------~~~rPfd~~r~G~v~gEGa 212 (381)
T PRK05952 139 VLAPMAACATGLWAIAQGVELIQTGQCQRVIAGAVEAPITPLTLAGFQQMGALAK------TGAYPFDRQREGLVLGEGG 212 (381)
T ss_pred cccccchhHHHHHHHHHHHHHHHcCCCCEEEEccccccCCHHHHHHHHhcCCcCC------CCCCCCCCCCCCccccccE
Confidence 9999999999999999999999999999999999998899999999999999875 4599999999999999999
Q ss_pred EEEEecchhHHHhcCCceEEEEEEEEEcCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCcCEEEEccCCCccCCHHHH
Q 012221 292 GVLVMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAGVSPEEVNYINAHATSTLAGDLAEI 371 (468)
Q Consensus 292 aavvL~~~~~A~~~g~~i~a~i~g~~~~~d~~~~~~~~~~~~~~~~~i~~al~~Agl~~~dId~v~~h~~gt~~~D~~E~ 371 (468)
+++|||++++|++||++||++|+|++.++|+++.+.|++++..+.++|+++|+++||+|+||||||+|||||+.+|..|.
T Consensus 213 a~lvLe~~~~A~~rg~~i~a~I~g~~~~~d~~~~~~~~~~~~~~~~ai~~Al~~agi~p~dId~i~~hgtgt~~~D~~E~ 292 (381)
T PRK05952 213 AILVLESAELAQKRGAKIYGQILGFGLTCDAYHMSAPEPDGKSAIAAIQQCLARSGLTPEDIDYIHAHGTATRLNDQREA 292 (381)
T ss_pred EEEEEeeHHHHHhCCCceEEEEEEEEecCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCHHHeeEEEccCCCCCCCcHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCCCceeeecccccCccccchhHHHHHHHHHHHhcCCcCCCCCCCCCCCCCCcccccccccccCccEEEEEc
Q 012221 372 NAIKKVFKNTTGIKINATKSMIGHCLGAAGGLEAIATVKAITTGWLHPSINQFNPEPSVEFDTVANKKQQHEVNVAISNS 451 (468)
Q Consensus 372 ~al~~~f~~~~~~~v~s~k~~~Gh~~~AsG~~~l~~~~~~l~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s 451 (468)
++|+++|+. .++|++.|+++||+++|+|++++++++++|++++|||++|+++|++ ++++++. .+..+.+++++||
T Consensus 293 ~al~~~fg~--~~~v~s~K~~~GH~~~AaG~~~~~~~~~~l~~~~ipp~~~~~~~~~--~~~~v~~-~~~~~~~~~l~~s 367 (381)
T PRK05952 293 NLIQALFPH--RVAVSSTKGATGHTLGASGALGVAFSLLALRHQQLPPCVGLQEPEF--DLNFVRQ-AQQSPLQNVLCLS 367 (381)
T ss_pred HHHHHHcCC--CCeeecchhhhccChHHHHHHHHHHHHHHHhcCccCCCCCCCCCCC--CCCcCCC-cccCCCCEEEEee
Confidence 999999985 6899999999999999999999999999999999999999998755 4555543 4556789999999
Q ss_pred ccccCeeeEEEEee
Q 012221 452 FGFGGHNSVVAFSA 465 (468)
Q Consensus 452 ~g~gG~n~~~vl~~ 465 (468)
|||||+|+++||++
T Consensus 368 ~gfGG~na~lvl~~ 381 (381)
T PRK05952 368 FGFGGQNAAIALGK 381 (381)
T ss_pred ecCCCeeEEEEEeC
Confidence 99999999999985
|
|
| >PRK06501 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-71 Score=562.63 Aligned_cols=404 Identities=35% Similarity=0.491 Sum_probs=356.3
Q ss_pred CCCcEEEEeeceeccCCCCHHHHHHHHHcCCCCccccCCCCCCCCCCccccccCCCCCCCCCCccccccCCHHHHHHHHH
Q 012221 54 PKKRVVITGMGLVSVFGNDVDAYYNKLLDGESGITMIDRFDASKFPTRFGGQIRGFSAEGYIDGKNDRRLDDCLRYCIVA 133 (468)
Q Consensus 54 ~~~~V~ItG~g~~~p~g~~~~~~~~~L~~G~~~i~~~~~~~~~~~~~~~~g~v~~~d~~~~i~~~~~~~~d~~~~l~l~a 133 (468)
.+.+|||||||+++|.|.+.++||++|++|+++|+++++|+...++.+++|.++.++.. ....+++.++|++.+
T Consensus 9 ~~~~VvITG~G~vs~~G~~~~~~~~~L~~G~s~i~~~~~~~~~~~~~~~~g~~~~~~~~------~~~~~~~~~~~~~~a 82 (425)
T PRK06501 9 GRPIVAVTGMGVVTSLGQGKADNWAALTAGESGIHTITRFPTEGLRTRIAGTVDFLPES------PFGASALSEALARLA 82 (425)
T ss_pred CCcCEEEEeeeEECCCCCCHHHHHHHHHcCCCceEcCCcccccCCCCceEEEEeecccc------cccccCHHHHHHHHH
Confidence 35689999999999999999999999999999999999999888999999998643322 223467789999999
Q ss_pred HHHHHHHcCCCCcccc-----------ccccccceEEEeecCCCccchHHHHHHHHHhCCCCcCCcCcchhhhhhhHHHH
Q 012221 134 GKKALEDADLGADISK-----------KIDKERAGVLVGTGMGGLTVFSDGVQALIEKGHRKITPFFIPYAITNMGSALL 202 (468)
Q Consensus 134 ~~~AL~dAgl~~~~~~-----------~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~i 202 (468)
+++||+|||+...... .....+++++.++.... ...++.++........+.++...+.+..+.+|
T Consensus 83 a~~Al~dAgl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i 158 (425)
T PRK06501 83 AEEALAQAGIGKGDFPGPLFLAAPPVELEWPARFALAAAVGDND----APSYDRLLRAARGGRFDALHERFQFGSIADRL 158 (425)
T ss_pred HHHHHHHcCCCccccccceeeccccccCCCCceEEEEEecCCcc----HHHHHHHHhhcCcccCChhhhhhcccHHHHHH
Confidence 9999999999321100 01245778877765432 22344555444444445556777788899999
Q ss_pred hhhhCCCCcceeecccChHHHHHHHHHHHHHHhCCCCEEEEEeeccccchhhhhHhhhccccccCCCCCCCCCCCCCCCC
Q 012221 203 AIDLGFMGPNYSISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWDKDR 282 (468)
Q Consensus 203 a~~lgl~Gp~~~v~~acas~l~Al~~A~~~I~~G~~d~~lvgG~e~~~~p~~~~~~~~~~~l~~~~~~~~~~~rpfd~~~ 282 (468)
+..||++||+++|+++|+|++.||++|+++|++|++|+|||||+|..+++..+..|..++.++...+.|+..|||||.++
T Consensus 159 ~~~~gl~G~~~~i~~aCaS~~~Al~~A~~~I~~G~~d~vlvgG~d~~~~~~~~~~~~~~~~ls~~~~~~~~~~rpfd~~r 238 (425)
T PRK06501 159 ADRFGTRGLPISLSTACASGATAIQLGVEAIRRGETDRALCIATDGSVSAEALIRFSLLSALSTQNDPPEKASKPFSKDR 238 (425)
T ss_pred HHHhCCCCCceeecCccHHHHHHHHHHHHHHHcCCCCEEEEeeecccCCHHHHHHHHHhhccccCCCCCCcccCCCCCCC
Confidence 99999999999999999999999999999999999999999999998999999999999999877777888999999999
Q ss_pred CCeeecceeEEEEecchhHHHhcCCceEEEEEEEEEcCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCcCEEEEccCC
Q 012221 283 DGFVMGEGAGVLVMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAGVSPEEVNYINAHATS 362 (468)
Q Consensus 283 ~G~v~gEGaaavvL~~~~~A~~~g~~i~a~i~g~~~~~d~~~~~~~~~~~~~~~~~i~~al~~Agl~~~dId~v~~h~~g 362 (468)
+|+++|||++++|||++++|++||++||++|.|++.++|+++.+.+.+++..+.++|+++|+++|++|+|||||++||||
T Consensus 239 ~G~v~GEGaaalVLe~~~~A~~rg~~i~a~i~g~~~~~d~~~~~~~~~~~~~~~~ai~~AL~~agi~p~dId~i~~Hgtg 318 (425)
T PRK06501 239 DGFVMAEGAGALVLESLESAVARGAKILGIVAGCGEKADSFHRTRSSPDGSPAIGAIRAALADAGLTPEQIDYINAHGTS 318 (425)
T ss_pred CCeeeeccEEEEEECcHHHHHHCCCeEEEEEEEEEEccCCCCCCCCCCCHHHHHHHHHHHHHHcCCCHHHcCEEEecCcc
Confidence 99999999999999999999999999999999999999999888888888899999999999999999999999999999
Q ss_pred CccCCHHHHHHHHHHhccC-CCceeeecccccCccccchhHHHHHHHHHHHhcCCcCCCCCCCCCCCCCCcccccccccc
Q 012221 363 TLAGDLAEINAIKKVFKNT-TGIKINATKSMIGHCLGAAGGLEAIATVKAITTGWLHPSINQFNPEPSVEFDTVANKKQQ 441 (468)
Q Consensus 363 t~~~D~~E~~al~~~f~~~-~~~~v~s~k~~~Gh~~~AsG~~~l~~~~~~l~~~~~pp~~~~~~~~~~~~~~~~~~~~~~ 441 (468)
|+.+|..|..+|.++|+.. ..++|++.|+++||+++|||++++++++++|++++||||+|+++|+|+++++++++..+.
T Consensus 319 t~~~d~~E~~al~~~~~~~~~~~pv~s~k~~~Gh~~~AsG~~~~~~~~l~l~~~~ipp~~n~~~~~~~~~~~~~~~~~~~ 398 (425)
T PRK06501 319 TPENDKMEYLGLSAVFGERLASIPVSSNKSMIGHTLTAAGAVEAVFSLLTIQTGRLPPTINYDNPDPAIPLDVVPNVARD 398 (425)
T ss_pred CcchHHHHHHHHHHHhcccCCCcEEECCCcccCCCchhhhHHHHHHHHHHHhcCcCCCcCCCCCCCCCCCcccCCCcccC
Confidence 9999999999999999862 468999999999999999999999999999999999999999999999999998877777
Q ss_pred cCccEEEEEcccccCeeeEEEEeecC
Q 012221 442 HEVNVAISNSFGFGGHNSVVAFSAFK 467 (468)
Q Consensus 442 ~~~~~~l~~s~g~gG~n~~~vl~~~~ 467 (468)
.+.+.+++|||||||+|+|+||++++
T Consensus 399 ~~~~~~l~ns~gfgG~n~~~vl~~~~ 424 (425)
T PRK06501 399 ARVTAVLSNSFGFGGQNASLVLTAEP 424 (425)
T ss_pred CCCCEEEEeCccCCCeeEEEEEecCC
Confidence 78999999999999999999999986
|
|
| >PRK14691 3-oxoacyl-(acyl carrier protein) synthase II; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-71 Score=542.11 Aligned_cols=339 Identities=41% Similarity=0.678 Sum_probs=320.9
Q ss_pred CCHHHHHHHHHHHHHHHHcCCCCccccccccccceEEEeecCCCccchHHHHHHHHHhCCCCcCCcCcchhhhhhhHHHH
Q 012221 123 LDDCLRYCIVAGKKALEDADLGADISKKIDKERAGVLVGTGMGGLTVFSDGVQALIEKGHRKITPFFIPYAITNMGSALL 202 (468)
Q Consensus 123 ~d~~~~l~l~a~~~AL~dAgl~~~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~i 202 (468)
|+++++|++.++++||+|||+ . .+..|+||++|++.++...++++++.+..++.+.++|+.++.++.|.+++++
T Consensus 1 ~~~~~~~~~~a~~~a~~~a~~---~---~~~~r~Gv~~G~~~g~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~n~~a~~i 74 (342)
T PRK14691 1 MGRWWRYKWITFHPSLTHADN---T---EKQERTATIIGAGIGGFPAIAHAVRTSDSRGPKRLSPFTVPSFLVNLAAGHV 74 (342)
T ss_pred CCHHHHHHHHHHHHHHHhCCC---C---CCcccEEEEEecCcccHHHHHHHHHHHHhcCccccChhHHhhhhhhHHHHHH
Confidence 578999999999999999998 2 4567999999999999998888888888888889999999999999999999
Q ss_pred hhhhCCCCcceeecccChHHHHHHHHHHHHHHhCCCCEEEEEeeccccchhhhhHhhhccccccC-CCCCCCCCCCCCCC
Q 012221 203 AIDLGFMGPNYSISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAIIPIGLGGFVACRALSQR-NDDPQTASRPWDKD 281 (468)
Q Consensus 203 a~~lgl~Gp~~~v~~acas~l~Al~~A~~~I~~G~~d~~lvgG~e~~~~p~~~~~~~~~~~l~~~-~~~~~~~~rpfd~~ 281 (468)
++.||++||+++++++|+|++.||..|+++|++|++|++||||+|..++|..+..|..++.|+.. +++|+..|||||++
T Consensus 75 s~~~~l~Gp~~ti~~aCaSg~~Al~~A~~~I~~G~~d~~ivgg~d~~~~~~~~~~f~~~~~ls~~~~~~p~~~~rPFd~~ 154 (342)
T PRK14691 75 SIKHHFKGPIGAPVTACAAGVQAIGDAVRMIRNNEADVALCGGAEAVIDTVSLAGFAAARALSTHFNSTPEKASRPFDTA 154 (342)
T ss_pred HHHhCCCCCccccccHhHHHHHHHHHHHHHHHcCCCCEEEEecccccCCHHHHHHHHHhhhhhcCCCCCCCcCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999864 56688999999999
Q ss_pred CCCeeecceeEEEEecchhHHHhcCCceEEEEEEEEEcCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCcCEEEEccC
Q 012221 282 RDGFVMGEGAGVLVMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAGVSPEEVNYINAHAT 361 (468)
Q Consensus 282 ~~G~v~gEGaaavvL~~~~~A~~~g~~i~a~i~g~~~~~d~~~~~~~~~~~~~~~~~i~~al~~Agl~~~dId~v~~h~~ 361 (468)
++|+++||||+++|||++++|++||+++|++|+|++.++|+++.+.|.+++.+..++|+++|+++||+|+||||||+|||
T Consensus 155 r~G~v~gEGAa~lvLes~~~A~~rG~~i~a~I~g~~~~~d~~~~~~p~p~~~~~~~ai~~AL~~Agl~p~dIdyIeaHgt 234 (342)
T PRK14691 155 RDGFVMGEGAGLLIIEELEHALARGAKPLAEIVGYGTSADAYHMTSGAEDGDGAYRAMKIALRQAGITPEQVQHLNAHAT 234 (342)
T ss_pred CCCccccceEEEEEEeeHHHHHhCCCCceEEEEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHcCCCHHHCCEEEecCC
Confidence 99999999999999999999999999999999999999999999888889999999999999999999999999999999
Q ss_pred CCccCCHHHHHHHHHHhccCCCceeeecccccCccccchhHHHHHHHHHHHhcCCcCCCCCCCCCCCCC-Cccccccccc
Q 012221 362 STLAGDLAEINAIKKVFKNTTGIKINATKSMIGHCLGAAGGLEAIATVKAITTGWLHPSINQFNPEPSV-EFDTVANKKQ 440 (468)
Q Consensus 362 gt~~~D~~E~~al~~~f~~~~~~~v~s~k~~~Gh~~~AsG~~~l~~~~~~l~~~~~pp~~~~~~~~~~~-~~~~~~~~~~ 440 (468)
||+.+|..|.++|+++|+....++|+++|+++||+++|||+++++.++++|++++||||+|+++|+|+| ++++++.+.+
T Consensus 235 gT~~~D~~E~~Ai~~~fg~~~~~~v~s~K~~~GH~~~AaG~~~~~~~~l~l~~~~ippt~n~~~~d~~~~~~~~v~~~~~ 314 (342)
T PRK14691 235 STPVGDLGEINAIKHLFGESNALAITSTKSATGHLLGAAGGLETIFTVLALRDQIVPATLNLENPDPAAKGLNIIAGNAQ 314 (342)
T ss_pred CCcCCCHHHHHHHHHHhCCCCCceEECCcccccCCcchhhHHHHHHHHHHHhCCccCCcCCCCCCCccccccCcccCCCc
Confidence 999999999999999998755689999999999999999999999999999999999999999999998 4888887777
Q ss_pred ccCccEEEEEcccccCeeeEEEEeecC
Q 012221 441 QHEVNVAISNSFGFGGHNSVVAFSAFK 467 (468)
Q Consensus 441 ~~~~~~~l~~s~g~gG~n~~~vl~~~~ 467 (468)
+++.+++++|||||||+|+++||+++.
T Consensus 315 ~~~~~~al~nsfgfGG~n~~lvl~~~~ 341 (342)
T PRK14691 315 PHDMTYALSNGFGFAGVNASILLKRWV 341 (342)
T ss_pred cCCCCEEEEeCccCCCeeEEEEEeecc
Confidence 778999999999999999999999874
|
|
| >PRK09185 3-oxoacyl-(acyl carrier protein) synthase I; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-68 Score=534.14 Aligned_cols=387 Identities=29% Similarity=0.448 Sum_probs=336.4
Q ss_pred CCcEEEEeeceeccCCCCHHHHHHHHHcCC-CCccccCCCCCCCCCCccccccCCCCCCCCCCccccccCCHHHHHHHHH
Q 012221 55 KKRVVITGMGLVSVFGNDVDAYYNKLLDGE-SGITMIDRFDASKFPTRFGGQIRGFSAEGYIDGKNDRRLDDCLRYCIVA 133 (468)
Q Consensus 55 ~~~V~ItG~g~~~p~g~~~~~~~~~L~~G~-~~i~~~~~~~~~~~~~~~~g~v~~~d~~~~i~~~~~~~~d~~~~l~l~a 133 (468)
|+||||||+|+++|.|.+.++||++|++|+ ++|++++.|+.. ++. +.|.+++|+. .+++.+..+++++..++++.+
T Consensus 1 m~~VvITG~G~vsp~G~~~~~~~~~l~~G~~sgi~~~~~~~~~-~~~-~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~a 77 (392)
T PRK09185 1 MTPVYISAFGATSALGRGLDAILAALRAGRASGMRPCDFWLVD-LPT-WVGEVVGVEL-PALPAALAAFDCRNNRLALLA 77 (392)
T ss_pred CCcEEEEeeEEECCCcCCHHHHHHHHHcCCCCCeEeCcccccc-CCe-EEEEecCccc-ccCCHHHHhcCCHHHHHHHHH
Confidence 568999999999999999999999999999 999999877643 433 4467777763 345666677888888888877
Q ss_pred HHH---HHHHcCCCCccccccccccceEEEeecCCCccchHHHHHHHHHhCCCCcCCcCcchhhhhhhHHHHhhhhCCCC
Q 012221 134 GKK---ALEDADLGADISKKIDKERAGVLVGTGMGGLTVFSDGVQALIEKGHRKITPFFIPYAITNMGSALLAIDLGFMG 210 (468)
Q Consensus 134 ~~~---AL~dAgl~~~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~ia~~lgl~G 210 (468)
+.+ ++++++ .+.+..|+||++|++.++....+..+..+.........++.++..+.+..+.++++.||++|
T Consensus 78 ~~~~~~a~~~~~------~~~~~~r~gv~~Gt~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lgl~G 151 (392)
T PRK09185 78 LQQIEPAVEAAI------ARYGADRIGVVLGTSTSGILEGELAYRRRDPAHGALPADYHYAQQELGSLADFLRAYLGLSG 151 (392)
T ss_pred HHHHHHHHHhhc------ccCCCCcEEEEEeeCCccHHHHHHHHHHHhhccCCCCCchhhhhhcccHHHHHHHHHhCCCC
Confidence 776 444443 23456789999999999888777766654433222334666778888999999999999999
Q ss_pred cceeecccChHHHHHHHHHHHHHHhCCCCEEEEEeeccccchhhhhHhhhccccccCCCCCCCCCCCCCCCCCCeeecce
Q 012221 211 PNYSISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWDKDRDGFVMGEG 290 (468)
Q Consensus 211 p~~~v~~acas~l~Al~~A~~~I~~G~~d~~lvgG~e~~~~p~~~~~~~~~~~l~~~~~~~~~~~rpfd~~~~G~v~gEG 290 (468)
|++++.++|+|++.||..|+++|++|++|.|||||+|. +++..+..|..++.++. ..|+|||.+++|+++|||
T Consensus 152 p~~~i~~acas~~~Al~~A~~~I~~G~~d~vlvgg~d~-~~~~~~~~~~~~~~l~~------~~~~Pfd~~~~G~~~gEG 224 (392)
T PRK09185 152 PAYTISTACSSSAKVFASARRLLEAGLCDAAIVGGVDS-LCRLTLNGFNSLESLSP------QPCRPFSANRDGINIGEA 224 (392)
T ss_pred CcccccChhHHHHHHHHHHHHHHHcCCCCEEEEeeccc-cChHHHHHHHhccccCC------CccCCCcCCCCccceece
Confidence 99999999999999999999999999999999999997 66777778888877763 579999999999999999
Q ss_pred eEEEEecchhHHHhcCCceEEEEEEEEEcCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCcCEEEEccCCCccCCHHH
Q 012221 291 AGVLVMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAGVSPEEVNYINAHATSTLAGDLAE 370 (468)
Q Consensus 291 aaavvL~~~~~A~~~g~~i~a~i~g~~~~~d~~~~~~~~~~~~~~~~~i~~al~~Agl~~~dId~v~~h~~gt~~~D~~E 370 (468)
++++|||++ ++.+ ++|.|++.++|+++...|++.+.++.++++++|++||++|+|||||++|||||+.+|..|
T Consensus 225 aa~vVLe~~-----~~~~--~~I~g~g~~~d~~~~~~~~~~~~~~~~a~~~Al~~Agl~~~dId~v~~hgtgt~~~D~~E 297 (392)
T PRK09185 225 AAFFLLERE-----DDAA--VALLGVGESSDAHHMSAPHPEGLGAILAMQQALADAGLAPADIGYINLHGTATPLNDAME 297 (392)
T ss_pred EEEEEEEEc-----CCCc--EEEEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHHcCCCHHHccEEEeCCCCCcCCCHHH
Confidence 999999987 2333 579999999999998888889999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCCCceeeecccccCccccchhHHHHHHHHHHHhcCCcCCCCCCCCCCCCCCcccccccccccCccEEEEE
Q 012221 371 INAIKKVFKNTTGIKINATKSMIGHCLGAAGGLEAIATVKAITTGWLHPSINQFNPEPSVEFDTVANKKQQHEVNVAISN 450 (468)
Q Consensus 371 ~~al~~~f~~~~~~~v~s~k~~~Gh~~~AsG~~~l~~~~~~l~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 450 (468)
..+|.++|+. .++|++.|+++||+++|||++++++++++|++|++||++|+++++|++++++++.+.+.+++|++++|
T Consensus 298 ~~al~~~f~~--~~pv~s~K~~~Gh~~~AaG~~~l~~~~~~l~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 375 (392)
T PRK09185 298 SRAVAAVFGD--GVPCSSTKGLTGHTLGAAGAVEAAICWLALRHGLPPHGWNTGQPDPALPPLYLVENAQALAIRYVLSN 375 (392)
T ss_pred HHHHHHHhCC--CCceeCCCcccccChhhcchHHHHHHHHHHhcCCCCCCCCCCCCCCCCCccccCCCCccCCCCEEEEe
Confidence 9999999986 46899999999999999999999999999999999999999999999998888877777778999999
Q ss_pred cccccCeeeEEEEeec
Q 012221 451 SFGFGGHNSVVAFSAF 466 (468)
Q Consensus 451 s~g~gG~n~~~vl~~~ 466 (468)
||||||+|+|+||++.
T Consensus 376 s~gfgG~n~~lvl~~~ 391 (392)
T PRK09185 376 SFAFGGNNCSLIFGRA 391 (392)
T ss_pred CccCCceeEEEEEEeC
Confidence 9999999999999975
|
|
| >smart00825 PKS_KS Beta-ketoacyl synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-68 Score=542.33 Aligned_cols=394 Identities=30% Similarity=0.477 Sum_probs=351.4
Q ss_pred EEEEeeceeccCCCCHHHHHHHHHcCCCCccccC--CCCCCCC------------CCccccccC---CCCCCCC-CCccc
Q 012221 58 VVITGMGLVSVFGNDVDAYYNKLLDGESGITMID--RFDASKF------------PTRFGGQIR---GFSAEGY-IDGKN 119 (468)
Q Consensus 58 V~ItG~g~~~p~g~~~~~~~~~L~~G~~~i~~~~--~~~~~~~------------~~~~~g~v~---~~d~~~~-i~~~~ 119 (468)
|+|||||+++|.|.+.++||++|.+|++++++++ +|+...+ ..++++.++ +||++.+ +++++
T Consensus 1 v~ItG~g~~~p~g~~~~~~~~~l~~g~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~~~~~i~~~~ 80 (424)
T smart00825 1 IAIVGMSCRFPGADSPEEFWDLLREGRDAITEIPADRWDADAFYYDPDPDRPGKSYVRWGGFLDDVDLFDAAFFGISPRE 80 (424)
T ss_pred CEEEEEEeeCCCCCCHHHHHHHHHcCCcccccCChHHcCccccccccccccCCCcccccceecCchhhCCHhHcCCCHHH
Confidence 7899999999999999999999999999999885 5655432 456677664 4777766 88999
Q ss_pred cccCCHHHHHHHHHHHHHHHHcCCCCccccccccccceEEEeecCCCccchHHHHHHHHHhCCCCcCCcCcchhhhhhhH
Q 012221 120 DRRLDDCLRYCIVAGKKALEDADLGADISKKIDKERAGVLVGTGMGGLTVFSDGVQALIEKGHRKITPFFIPYAITNMGS 199 (468)
Q Consensus 120 ~~~~d~~~~l~l~a~~~AL~dAgl~~~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a 199 (468)
.++|++.++|+++++++||+|||+ ++.+++..++||++|++.+. +..........+.++.++..+.+..+
T Consensus 81 ~~~~~~~~~l~~~aa~~Al~dAGl---~~~~id~~~~gv~~g~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~a 150 (424)
T smart00825 81 AEAMDPQQRLLLEVAWEALEDAGI---DPESLRGSRTGVFVGAMSSD-------YAELLARDPEDIEGYAATGTARSFIA 150 (424)
T ss_pred HHhcCHHHHHHHHHHHHHHHHcCC---ChhHcCCCCCEEEEEEcHHH-------HHHHHhhCccccchhhhccchhHHHH
Confidence 999999999999999999999999 66778888999999987432 23334455667778888888899999
Q ss_pred HHHhhhhCCCCcceeecccChHHHHHHHHHHHHHHhCCCCEEEEEeeccccchhhhhHhhhccccccCCCCCCCCCCCCC
Q 012221 200 ALLAIDLGFMGPNYSISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWD 279 (468)
Q Consensus 200 ~~ia~~lgl~Gp~~~v~~acas~l~Al~~A~~~I~~G~~d~~lvgG~e~~~~p~~~~~~~~~~~l~~~~~~~~~~~rpfd 279 (468)
.+++..+|++||+++++++|+|++.||.+|+++|++|++|+|||||+|...++..+..|...+.++ +.+.++|||
T Consensus 151 ~~i~~~lgl~g~~~~v~~acasg~~Al~~A~~~I~~G~~d~vlvgg~~~~~~~~~~~~~~~~~~l~-----~~~~~~pf~ 225 (424)
T smart00825 151 NRISYFFDLRGPSVTVDTACSSSLVALHLACQSLRSGECDMALAGGVNLILSPDTFVGFSRAGMLS-----PDGRCKTFD 225 (424)
T ss_pred HHHHHHhCCCCCccccccHhHHHHHHHHHHHHHHHcCCCCeeEEeeeeecCCHHHHHHHhhcCCCC-----CCCCCCCCC
Confidence 999999999999999999999999999999999999999999999999988888888888888776 356799999
Q ss_pred CCCCCeeecceeEEEEecchhHHHhcCCceEEEEEEEEEcCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCcCEEEEc
Q 012221 280 KDRDGFVMGEGAGVLVMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAGVSPEEVNYINAH 359 (468)
Q Consensus 280 ~~~~G~v~gEGaaavvL~~~~~A~~~g~~i~a~i~g~~~~~d~~~~~~~~~~~~~~~~~i~~al~~Agl~~~dId~v~~h 359 (468)
.+++|+++|||++++||+++++|+++|+++|++|+|++.++++++.....+++..+..+|+++|+++|++++|||||++|
T Consensus 226 ~~~~g~~~geGAaalVLe~~e~A~~~g~~i~a~I~g~~~~~~~~~~~~~~~~~~~~~~a~~~al~~Agl~~~dId~i~~h 305 (424)
T smart00825 226 ADADGYVRGEGVGVVVLKRLSDALRDGDPILAVIRGSAVNQDGRSNGLTAPSGPAQARLIRQALARAGVDPADVDYVEAH 305 (424)
T ss_pred CCCCcccccceEEEEEEccHHHHHHCCCeEEEEEEEEEEeCCCCCCCCCCcCHHHHHHHHHHHHHHhCCCHHHccEEEee
Confidence 99999999999999999999999999999999999999999988765556678888999999999999999999999999
Q ss_pred cCCCccCCHHHHHHHHHHhccC----CCceeeecccccCccccchhHHHHHHHHHHHhcCCcCCCCCCCCCCCCCCcc--
Q 012221 360 ATSTLAGDLAEINAIKKVFKNT----TGIKINATKSMIGHCLGAAGGLEAIATVKAITTGWLHPSINQFNPEPSVEFD-- 433 (468)
Q Consensus 360 ~~gt~~~D~~E~~al~~~f~~~----~~~~v~s~k~~~Gh~~~AsG~~~l~~~~~~l~~~~~pp~~~~~~~~~~~~~~-- 433 (468)
|+||+.+|..|.++|+++|+.. .+++|++.|+++||+.+|||++++++++++|++++|||++|+++|++.++++
T Consensus 306 ~tgt~~~d~~E~~al~~~~~~~~~~~~~~~v~s~k~~~Gh~~~AsG~~~l~~~~~~l~~~~ip~~~~~~~~~~~~~~~~~ 385 (424)
T smart00825 306 GTGTPLGDPIEAEALAAVFGQGRPRDGPLLLGSVKSNIGHLEAAAGVAGLIKVVLALRHGTIPPTLHFETPNPHIDLEES 385 (424)
T ss_pred CCCCCCCCHHHHHHHHHHHhccCCCCCceEEeccccccCCcccchhHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcccC
Confidence 9999999999999999999852 4689999999999999999999999999999999999999999999999876
Q ss_pred --ccccccccc----CccEEEEEcccccCeeeEEEEeec
Q 012221 434 --TVANKKQQH----EVNVAISNSFGFGGHNSVVAFSAF 466 (468)
Q Consensus 434 --~~~~~~~~~----~~~~~l~~s~g~gG~n~~~vl~~~ 466 (468)
+++.+.+++ .++++++|||||||+|+|+||+++
T Consensus 386 ~~~~~~~~~~~~~~~~~~~~l~~s~gfgg~n~~lvl~~~ 424 (424)
T smart00825 386 PLRVPTEATPWPATGRPRRAGVSSFGFGGTNAHVILEEA 424 (424)
T ss_pred ceEccCCCcCCCCCCCccEEEEeccCCCCceEEEEEecC
Confidence 455555444 589999999999999999999975
|
The structure of beta-ketoacyl synthase is similar to that of the thiolase family and also chalcone synthase. The active site of beta-ketoacyl synthase is located between the N and C-terminal domains. |
| >PRK06519 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-68 Score=527.63 Aligned_cols=375 Identities=23% Similarity=0.278 Sum_probs=315.7
Q ss_pred CCcEEEEeeceeccCCCCHHHHHHHHHcCCCCccccCCCCCCCCCCccccccCCCCCCCCCCcc-ccccCCHHHHHHHHH
Q 012221 55 KKRVVITGMGLVSVFGNDVDAYYNKLLDGESGITMIDRFDASKFPTRFGGQIRGFSAEGYIDGK-NDRRLDDCLRYCIVA 133 (468)
Q Consensus 55 ~~~V~ItG~g~~~p~g~~~~~~~~~L~~G~~~i~~~~~~~~~~~~~~~~g~v~~~d~~~~i~~~-~~~~~d~~~~l~l~a 133 (468)
.+||||||||+++|.|.++++||++|++|+++ ..++..+...++... +.+++++.+++++ ..|+||+.++|++.+
T Consensus 5 ~~rVvITGiG~vsp~G~~~e~~w~aL~~G~sg-~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~r~~~r~~~~a~~A 80 (398)
T PRK06519 5 PNDVVITGIGLVSSLGEGLDAHWNALSAGRPQ-PNVDTETFAPYPVHP---LPEIDWSQQIPKRGDQRQMETWQRLGTYA 80 (398)
T ss_pred CCCEEEEcceEECCCCCCHHHHHHHHHcCCCC-CCCCcccccCcCccc---ccccChhhcCCchhhhhccCHHHHHHHHH
Confidence 56899999999999999999999999999997 222222222233333 2334444456666 678999999999999
Q ss_pred HHHHHHHcCCCCccccccccccceEEEeecCCCccchHHH------------HHHHHHhCCCCcCCcCcchhhhhhhHHH
Q 012221 134 GKKALEDADLGADISKKIDKERAGVLVGTGMGGLTVFSDG------------VQALIEKGHRKITPFFIPYAITNMGSAL 201 (468)
Q Consensus 134 ~~~AL~dAgl~~~~~~~~~~~~~gv~~g~~~g~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~n~~a~~ 201 (468)
+++||+|||+. ....+..|+||++|++.++.....+. ...+.+.+.+.++|+.++..++|.++++
T Consensus 81 a~~Al~dAGl~---~~~~~~~r~GvivGt~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~n~~a~~ 157 (398)
T PRK06519 81 AGLALDDAGIK---GNEELLSTMDMIVAAGGGERDIAVDTAILNEARKRNDRGVLLNERLMTELRPTLFLAQLSNLLAGN 157 (398)
T ss_pred HHHHHHHcCCC---CCCCCccceEEEEEeCCCchhHHHhhhhhhcccchhHHHHHHHhcCCCccChhhhhhhhhhHHHHH
Confidence 99999999993 33345679999999999887654322 2334455677889999999999999999
Q ss_pred HhhhhCCCCcceeecccChHHHHHHHHHHHHHHhCCCCEEEEEeeccccchhhhhHhhhccccccCCCCCCCCCCC-CCC
Q 012221 202 LAIDLGFMGPNYSISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRP-WDK 280 (468)
Q Consensus 202 ia~~lgl~Gp~~~v~~acas~l~Al~~A~~~I~~G~~d~~lvgG~e~~~~p~~~~~~~~~~~l~~~~~~~~~~~rp-fd~ 280 (468)
|++.||++||+++|+++|+|++.||.+|+++|++|++|++||||+|..++|..+..|..++.++. ..++| ||.
T Consensus 158 is~~~gl~Gp~~ti~~acaSg~~Ai~~A~~~I~~G~~d~~lvGG~d~~~~~~~~~~~~~~~~ls~------~~~~p~~d~ 231 (398)
T PRK06519 158 ISIVHKVTGSSRTFMGEESAGVSAIEIAFARIASGQSDHALVGGAYNAERPDMLLLYELGGLLLK------GGWAPVWSR 231 (398)
T ss_pred HHHHhCCCCccccccCCccHHHHHHHHHHHHHHcCCCCEEEEeeeccccCHHHHHHHHHcCccCC------CCCCchhcc
Confidence 99999999999999999999999999999999999999999999999899999999999998875 23555 455
Q ss_pred ---CCCCeeecceeEEEEecchhHHHhcCCceEEEEEEEEEcCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCcCEEE
Q 012221 281 ---DRDGFVMGEGAGVLVMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAGVSPEEVNYIN 357 (468)
Q Consensus 281 ---~~~G~v~gEGaaavvL~~~~~A~~~g~~i~a~i~g~~~~~d~~~~~~~~~~~~~~~~~i~~al~~Agl~~~dId~v~ 357 (468)
+++||++|||++++|||++++|++||++||++|+|++...+ +. ...++.++|++||++||+ ++|||||+
T Consensus 232 ~~~~r~G~v~GEGAa~lvLE~~~~A~~Rga~i~AeI~G~~~d~~------~~-~~~~~~~am~~AL~~Agl-~~~IdyI~ 303 (398)
T PRK06519 232 GGEDGGGFILGSGGAFLVLESREHAEARGARPYARISGVESDRA------RR-APGDLEASLERLLKPAGG-LAAPTAVI 303 (398)
T ss_pred CccCCCCeeeeceEEEEEEeeHHHHHhCCCceEEEEEEEeecCC------CC-ChHHHHHHHHHHHHHCCC-cccCCEEE
Confidence 69999999999999999999999999999999999964332 11 335788999999999999 89999999
Q ss_pred EccCCCccCCHHHHHHHHHHhccCCCceeeecccccCccccchhHHHHHHHHHHHhcCCcCCCCCCCCCCCCCCcccccc
Q 012221 358 AHATSTLAGDLAEINAIKKVFKNTTGIKINATKSMIGHCLGAAGGLEAIATVKAITTGWLHPSINQFNPEPSVEFDTVAN 437 (468)
Q Consensus 358 ~h~~gt~~~D~~E~~al~~~f~~~~~~~v~s~k~~~Gh~~~AsG~~~l~~~~~~l~~~~~pp~~~~~~~~~~~~~~~~~~ 437 (468)
+|||||+.+|..|..+|+++|+ .+|+|+|+++||+++|+|+++++.++++|++|++||++|+. |+
T Consensus 304 ahgtgT~~~D~~E~~Ai~~~f~----~pvsS~Ks~~GH~l~AAGa~e~i~~~lal~~g~vpp~~n~~---~~-------- 368 (398)
T PRK06519 304 SGATGAHPATAEEKAALEAALA----GPVRGIGTLFGHTMEAQFPLGLALAALSVSKGALFPPFDAS---GE-------- 368 (398)
T ss_pred eCCCCCCCccHHHHHHHHHHcC----CCccccchhhccchHHHHHHHHHHHHHHHhcCccCCCCCCC---cc--------
Confidence 9999999999999999999995 57999999999999999999999999999999999999972 22
Q ss_pred cccccCccEEEEEcccccCeeeEEEEee
Q 012221 438 KKQQHEVNVAISNSFGFGGHNSVVAFSA 465 (468)
Q Consensus 438 ~~~~~~~~~~l~~s~g~gG~n~~~vl~~ 465 (468)
.+...+++.++++++|++|.-...+++.
T Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (398)
T PRK06519 369 KPMSGAAREAVVTTVGHWRGEGMALVEA 396 (398)
T ss_pred cCccccccEEEEEeeccCCcceeEEEEe
Confidence 3345677899999999998776666553
|
|
| >cd00833 PKS polyketide synthases (PKSs) polymerize simple fatty acids into a large variety of different products, called polyketides, by successive decarboxylating Claisen condensations | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-67 Score=536.47 Aligned_cols=393 Identities=31% Similarity=0.484 Sum_probs=349.1
Q ss_pred CcEEEEeeceeccCCCCHHHHHHHHHcCCCCccccC--CCCCCC----------CCCccccccCC---CCCCCC-CCccc
Q 012221 56 KRVVITGMGLVSVFGNDVDAYYNKLLDGESGITMID--RFDASK----------FPTRFGGQIRG---FSAEGY-IDGKN 119 (468)
Q Consensus 56 ~~V~ItG~g~~~p~g~~~~~~~~~L~~G~~~i~~~~--~~~~~~----------~~~~~~g~v~~---~d~~~~-i~~~~ 119 (468)
++|||||||+++|.|.+.++||++|.+|++++++++ +|+... ....+++++++ ||.+++ +++++
T Consensus 1 ~~v~ItG~g~~~p~g~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~ 80 (421)
T cd00833 1 EPIAIVGMACRFPGAADPDEFWENLLEGRDAISEIPEDRWDADGYYPDPGKPGKTYTRRGGFLDDVDAFDAAFFGISPRE 80 (421)
T ss_pred CCEEEEceeeECCCCCCHHHHHHHHHcCCCcCcCCChhHcCccccccccccCCCcceecceecCCcccCCHhHcCCCHHH
Confidence 379999999999999999999999999999999986 455432 25667788876 555544 88899
Q ss_pred cccCCHHHHHHHHHHHHHHHHcCCCCccccccccccceEEEeecCCCccchHHHHHHHHHhCCCCcCCcCcchhhhhhhH
Q 012221 120 DRRLDDCLRYCIVAGKKALEDADLGADISKKIDKERAGVLVGTGMGGLTVFSDGVQALIEKGHRKITPFFIPYAITNMGS 199 (468)
Q Consensus 120 ~~~~d~~~~l~l~a~~~AL~dAgl~~~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a 199 (468)
.++|+++++|+++++++||+|||+ .+.+++..++||++|+..+ .+..+.......++++.++..+.+..+
T Consensus 81 ~~~~~~~~~l~~~aa~~AL~dAgl---~~~~~~~~~~gv~~g~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~a 150 (421)
T cd00833 81 AEAMDPQQRLLLEVAWEALEDAGY---SPESLAGSRTGVFVGASSS-------DYLELLARDPDEIDAYAATGTSRAFLA 150 (421)
T ss_pred HHhcCHHHHHHHHHHHHHHHHcCC---CchhcCCCCceEEeCcCHH-------HHHHHHhhcccccCcccccCcchHHHH
Confidence 999999999999999999999999 5567788999999998755 223333444456788888998999999
Q ss_pred HHHhhhhCCCCcceeecccChHHHHHHHHHHHHHHhCCCCEEEEEeeccccchhhhhHhhhccccccCCCCCCCCCCCCC
Q 012221 200 ALLAIDLGFMGPNYSISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWD 279 (468)
Q Consensus 200 ~~ia~~lgl~Gp~~~v~~acas~l~Al~~A~~~I~~G~~d~~lvgG~e~~~~p~~~~~~~~~~~l~~~~~~~~~~~rpfd 279 (468)
.+++..+|++||+++++++|+|++.||..|+++|++|++|++||||+|...++..+..|...+.++. ...++|||
T Consensus 151 ~~i~~~~gl~g~~~~v~~acas~~~Al~~A~~~I~~G~~d~~lvgg~~~~~~~~~~~~~~~~~~l~~-----~~~~~pf~ 225 (421)
T cd00833 151 NRISYFFDLRGPSLTVDTACSSSLVALHLACQSLRSGECDLALVGGVNLILSPDMFVGFSKAGMLSP-----DGRCRPFD 225 (421)
T ss_pred HHHHHHcCCCCCceeeccHhHHHHHHHHHHHHHHHcCCCCeeEEeeeeccCCHHHHHHHhhCCCCCC-----CCCCCCCC
Confidence 9999999999999999999999999999999999999999999999999888888888888887773 45799999
Q ss_pred CCCCCeeecceeEEEEecchhHHHhcCCceEEEEEEEEEcCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCcCEEEEc
Q 012221 280 KDRDGFVMGEGAGVLVMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAGVSPEEVNYINAH 359 (468)
Q Consensus 280 ~~~~G~v~gEGaaavvL~~~~~A~~~g~~i~a~i~g~~~~~d~~~~~~~~~~~~~~~~~i~~al~~Agl~~~dId~v~~h 359 (468)
.+++|+++|||++++||+++++|+++|+++|++|+|++.++++.+.....+.+.++.++++++|+++|++++|||||++|
T Consensus 226 ~~~~g~~~geGAaalvL~~~~~A~~~g~~~~a~i~g~~~~~~~~~~~~~~p~~~~~~~a~~~al~~Agi~~~did~i~~h 305 (421)
T cd00833 226 ADADGYVRGEGVGVVVLKRLSDALRDGDRIYAVIRGSAVNQDGRTKGITAPSGEAQAALIRRAYARAGVDPSDIDYVEAH 305 (421)
T ss_pred CCCCCeeeeceEEEEEEeeHHHHHHCCCeEEEEEEEEEEcCCCCCCCCcCCCHHHHHHHHHHHHHHhCCCHHHCcEEEee
Confidence 99999999999999999999999999999999999999999988666666678889999999999999999999999999
Q ss_pred cCCCccCCHHHHHHHHHHhccC----CCceeeecccccCccccchhHHHHHHHHHHHhcCCcCCCCCCCCCCCCCCcc--
Q 012221 360 ATSTLAGDLAEINAIKKVFKNT----TGIKINATKSMIGHCLGAAGGLEAIATVKAITTGWLHPSINQFNPEPSVEFD-- 433 (468)
Q Consensus 360 ~~gt~~~D~~E~~al~~~f~~~----~~~~v~s~k~~~Gh~~~AsG~~~l~~~~~~l~~~~~pp~~~~~~~~~~~~~~-- 433 (468)
||||+.+|..|.++|+++|+.. ..+++++.|+++||+++|+|++++++++++|+++.+||++|+++|++.++++
T Consensus 306 gtgt~~~D~~E~~al~~~f~~~~~~~~~~~v~s~k~~~Gh~~~aag~~~l~~~~~~l~~~~ip~~~~~~~~~~~~~~~~~ 385 (421)
T cd00833 306 GTGTPLGDPIEVEALAKVFGGSRSADQPLLIGSVKSNIGHLEAAAGLAGLIKVVLALEHGVIPPNLHFETPNPKIDFEES 385 (421)
T ss_pred CCCCCCCCHHHHHHHHHHHhccCCCCCceeeecCcCccccchhhhHHHHHHHHHHHHhcCCcCCcCCCCCCCCCCCcccC
Confidence 9999999999999999999874 4689999999999999999999999999999999999999999999999853
Q ss_pred --cccccccccC----ccEEEEEcccccCeeeEEEE
Q 012221 434 --TVANKKQQHE----VNVAISNSFGFGGHNSVVAF 463 (468)
Q Consensus 434 --~~~~~~~~~~----~~~~l~~s~g~gG~n~~~vl 463 (468)
+++++.++++ ++++++|+|||||+|+|+||
T Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~sfgfgg~n~~~vl 421 (421)
T cd00833 386 PLRVPTEARPWPAPAGPRRAGVSSFGFGGTNAHVIL 421 (421)
T ss_pred CeEeeCCCccCCCCCCCeEEEEeCcCCCCceeEEeC
Confidence 4555554443 79999999999999999986
|
PKSs can be divided into 2 groups, modular type I PKSs consisting of one or more large multifunctional proteins and iterative type II PKSs, complexes of several monofunctional subunits. |
| >KOG1202 consensus Animal-type fatty acid synthase and related proteins [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-61 Score=495.61 Aligned_cols=390 Identities=26% Similarity=0.422 Sum_probs=345.4
Q ss_pred CCcEEEEeeceeccCCCCHHHHHHHHHcCCCCccccC-CCCCCC--CCCccccccCC---CCCCCC-CCccccccCCHHH
Q 012221 55 KKRVVITGMGLVSVFGNDVDAYYNKLLDGESGITMID-RFDASK--FPTRFGGQIRG---FSAEGY-IDGKNDRRLDDCL 127 (468)
Q Consensus 55 ~~~V~ItG~g~~~p~g~~~~~~~~~L~~G~~~i~~~~-~~~~~~--~~~~~~g~v~~---~d~~~~-i~~~~~~~~d~~~ 127 (468)
+++|||+||....|...++++||.+|.+|.+-+++-+ ||...- +|.+ -|.++| ||..+| ..++++..|||+.
T Consensus 10 ~edIvIsG~sgklPes~nv~eF~~nLl~g~DmVtdd~rrW~~G~ygLP~r-~gKlKdL~kFDa~ff~vh~KQa~~MDPq~ 88 (2376)
T KOG1202|consen 10 QEDIVISGMSGKLPESDNVKEFGDNLLAGVDMVTDDPRRWEAGLYGLPKR-SGKLKDLNKFDAGFFGVHPKQANTMDPQL 88 (2376)
T ss_pred CCcEEEeccCCCCCCcccHHHHhhhhhcccccccCCcccccccccCCchh-hcchhhhhhhcccccCcCcccccccCHHH
Confidence 5789999999999999999999999999999998866 455432 2333 344444 888887 8999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCccccccccccceEEEeecCCCccchHHHHHHHHHhCCCCcCCcCcchhhhhhhHHHHhhhhC
Q 012221 128 RYCIVAGKKALEDADLGADISKKIDKERAGVLVGTGMGGLTVFSDGVQALIEKGHRKITPFFIPYAITNMGSALLAIDLG 207 (468)
Q Consensus 128 ~l~l~a~~~AL~dAgl~~~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~ia~~lg 207 (468)
||.+++.|||+-|||| .+.++.++++|||+|.+..+.... +...+..+..+...+....+.+.||++.|+
T Consensus 89 RlLLE~t~EAivDaGi---NP~~LRGs~tGv~vg~s~seTs~~-------~~~dp~t~~Gy~mtgc~raMfaNRiSytFD 158 (2376)
T KOG1202|consen 89 RLLLEATWEAIVDAGI---NPDDLRGSRTGVFVGVSGSETSGA-------LSQDPDTVNGYSMTGCVRAMFANRISYTFD 158 (2376)
T ss_pred HHHHHHHHHHHHhCCC---ChhhcCcccceeEEeecCcccccc-------ccCCCccccceeecccHHHHhhcceeEEEe
Confidence 9999999999999999 778999999999999987654432 122344566777788889999999999999
Q ss_pred CCCcceeecccChHHHHHHHHHHHHHHhCCCCEEEEEeeccccchhhhhHhhhccccccCCCCCCCCCCCCCCCCCCeee
Q 012221 208 FMGPNYSISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWDKDRDGFVM 287 (468)
Q Consensus 208 l~Gp~~~v~~acas~l~Al~~A~~~I~~G~~d~~lvgG~e~~~~p~~~~~~~~~~~l~~~~~~~~~~~rpfd~~~~G~v~ 287 (468)
|+||++.++++|+|++.||..|++.|+.|+||.+||+|++..+.|..-..|.++++|+ |++.|+.||...|||++
T Consensus 159 fqGPS~s~DtacsSsl~al~~a~~~~r~gqcd~AiVaG~~liLkPt~slQFlRLgmls-----~dGsCkaFDeagnGY~R 233 (2376)
T KOG1202|consen 159 FQGPSFSVDTACSSSLMALQNAFQDIRSGQCDAAIVAGANLILKPTTSLQFLRLGMLS-----PDGSCKAFDEAGNGYCR 233 (2376)
T ss_pred ccCCchhhhhhhHHHHHHHHHHHHhhhccCCchhhhcccceEeccchhhHHHHhcCcC-----CCCcccchhccCCceee
Confidence 9999999999999999999999999999999999999999999999999999999999 57899999999999999
Q ss_pred cceeEEEEecchhHHHhcCCceEEEEEEEEEcCCCC---CCCCCCCChHHHHHHHHHHHHHcCCCCCCcCEEEEccCCCc
Q 012221 288 GEGAGVLVMESLEHAMKRGAPIIAEYLGGAVNCDAY---HMTDPRADGLGVSSCIESSLEDAGVSPEEVNYINAHATSTL 364 (468)
Q Consensus 288 gEGaaavvL~~~~~A~~~g~~i~a~i~g~~~~~d~~---~~~~~~~~~~~~~~~i~~al~~Agl~~~dId~v~~h~~gt~ 364 (468)
+||+++++|.+...|++ +||.|.-..+|.||+ .++.| .|.-+.+.++..|+++|+.|+++-|||+|||||+
T Consensus 234 seg~~avllqrk~~ArR----vYAtilnartNTDGfKEqGvTfP--~G~~Q~qLi~e~Yse~Gl~P~sv~YvEAHGtGTk 307 (2376)
T KOG1202|consen 234 SEGVVAVLLQRKSLARR----VYATILNARTNTDGFKEQGVTFP--SGDMQEQLIRETYSEAGLNPESVVYVEAHGTGTK 307 (2376)
T ss_pred cCceEEEEEehhHHHHH----HHHHhhccccCCCchhhcCccCC--CcHHHHHHHHHHHHhcCCCcccEEEEEeccCCCC
Confidence 99999999999988874 689999999999997 35554 7888899999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHhcc--CCCceeeecccccCccccchhHHHHHHHHHHHhcCCcCCCCCCCCCCCCCCccc-----ccc
Q 012221 365 AGDLAEINAIKKVFKN--TTGIKINATKSMIGHCLGAAGGLEAIATVKAITTGWLHPSINQFNPEPSVEFDT-----VAN 437 (468)
Q Consensus 365 ~~D~~E~~al~~~f~~--~~~~~v~s~k~~~Gh~~~AsG~~~l~~~~~~l~~~~~pp~~~~~~~~~~~~~~~-----~~~ 437 (468)
.||+-|+++|.+.|.. ..++.|+|+|+++||++.|||+..+.+.+++|++|.|||++|+..|||+++-.. |..
T Consensus 308 VGDpQEaN~it~~fC~~Rt~pLLIGSvKSNMGHaEPASGv~alaKillsmE~glip~NLHy~tPNp~ip~L~dGrLkVVd 387 (2376)
T KOG1202|consen 308 VGDPQEANGITRFFCATRTTPLLIGSVKSNMGHAEPASGVCALAKILLSMEEGLIPPNLHYNTPNPEIPALVDGRLKVVD 387 (2376)
T ss_pred CCChHHhhhHHHHHhhcCCCceEeeeccccCCCCCccchHHHHHHHHHHHHhCcCCCccccCCCCCCcchhccceeEEec
Confidence 9999999999999986 457889999999999999999999999999999999999999999999997321 334
Q ss_pred cccccCccEEEEEcccccCeeeEEEEeec
Q 012221 438 KKQQHEVNVAISNSFGFGGHNSVVAFSAF 466 (468)
Q Consensus 438 ~~~~~~~~~~l~~s~g~gG~n~~~vl~~~ 466 (468)
...+++--++.+|||||||.|+||||+.-
T Consensus 388 ~~lp~~GGivGiNSFGFGGsN~HviLks~ 416 (2376)
T KOG1202|consen 388 RPLPWRGGIVGINSFGFGGSNAHVILKSN 416 (2376)
T ss_pred CCCCccCceeeeeccccCCCceeEEeccC
Confidence 44566667888899999999999999874
|
|
| >cd00825 decarbox_cond_enzymes decarboxylating condensing enzymes; Family of enzymes that catalyze the formation of a new carbon-carbon bond by a decarboxylating Claisen-like condensation reaction | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-43 Score=348.38 Aligned_cols=322 Identities=32% Similarity=0.476 Sum_probs=274.6
Q ss_pred HHHHHHHHHHHHHHHcCCCCccccccccccceEEEeecCCCccchHHHHHHHHHhCCCCcCCcCcchhhhhhhHHHHhhh
Q 012221 126 CLRYCIVAGKKALEDADLGADISKKIDKERAGVLVGTGMGGLTVFSDGVQALIEKGHRKITPFFIPYAITNMGSALLAID 205 (468)
Q Consensus 126 ~~~l~l~a~~~AL~dAgl~~~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~ia~~ 205 (468)
+++|++.|+++||++||+ +......+..++++|++.+.... .....+....++|+.+.+.+.+..+++++..
T Consensus 11 ~~~l~~~aa~~aL~~Ag~---~~~~~~~~i~~ii~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~ 82 (332)
T cd00825 11 VSILGFEAAERAIADAGL---SREYQKNPIVGVVVGTGGGSPRF-----QVFGADAMRAVGPYVVTKAMFPGASGQIATP 82 (332)
T ss_pred HHHHHHHHHHHHHHHcCC---CccccCCCCEEEEEEeCCccHHH-----HhhhhccccccCcchhhcccchHHHHHHHHH
Confidence 578999999999999999 43333345669999988665421 2223344567889999999999999999999
Q ss_pred hCCCCcceeecccChHHHHHHHHHHHHHHhCCCCEEEEEeeccccchhhhhHhhhccccccCCCCCCCCCCCCCCCCCCe
Q 012221 206 LGFMGPNYSISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWDKDRDGF 285 (468)
Q Consensus 206 lgl~Gp~~~v~~acas~l~Al~~A~~~I~~G~~d~~lvgG~e~~~~p~~~~~~~~~~~l~~~~~~~~~~~rpfd~~~~G~ 285 (468)
+|++||+++++.+|+|++.||++|+++|++|++|.+||+|+|....+...........+ .|+..++||+...+|+
T Consensus 83 lgl~g~~~~v~~~cas~~~al~~A~~~i~~g~~~~~Lv~~~d~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~g~ 157 (332)
T cd00825 83 LGIHGPAYDVSAACAGSLHALSLAADAVQNGKQDIVLAGGSEELAAPMDCEFDAMGALS-----TPEKASRTFDAAADGF 157 (332)
T ss_pred hCCCCCccccccHhHHHHHHHHHHHHHHHcCCCCEEEEeccccccCHHHHHHHhhcccc-----CCCCCCCCCCCCCCCE
Confidence 99999999999999999999999999999999999999999986655544332222222 2567789999999999
Q ss_pred eecceeEEEEecchhHHHhcCCceEEEEEEEEEcCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCcCEEEEccCCCcc
Q 012221 286 VMGEGAGVLVMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAGVSPEEVNYINAHATSTLA 365 (468)
Q Consensus 286 v~gEGaaavvL~~~~~A~~~g~~i~a~i~g~~~~~d~~~~~~~~~~~~~~~~~i~~al~~Agl~~~dId~v~~h~~gt~~ 365 (468)
++|||++++||++++.|+++|.+++++|.+++...++.+...+.+....+.++++++|+++|++++||||++.|+++++.
T Consensus 158 ~~gdGaaA~vL~~~~~a~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~al~~agl~~~did~~~~h~~~~~~ 237 (332)
T cd00825 158 VFGDGAGALVVEELEHALARGAHIYAEIVGTAATIDGAGMGAFAPSAEGLARAAKEALAVAGLTVWDIDYLVAHGTGTPI 237 (332)
T ss_pred EEEeeEEEEEECcHHHHHHCCCeEEEEEEEEEEccCCCCCCCCCcCHHHHHHHHHHHHHHcCCCHhHCCEEEccCCCCCC
Confidence 99999999999999999999999999999999998887665556677888999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHhccCCCceeeecccccCccccchhHHHHHHHHHHHhcCCcCCCCCCCCCCCCCCcccccccccccCcc
Q 012221 366 GDLAEINAIKKVFKNTTGIKINATKSMIGHCLGAAGGLEAIATVKAITTGWLHPSINQFNPEPSVEFDTVANKKQQHEVN 445 (468)
Q Consensus 366 ~D~~E~~al~~~f~~~~~~~v~s~k~~~Gh~~~AsG~~~l~~~~~~l~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (468)
.|.+|.+++...++. .++++.+.|..+||+.+|++++++++++++++++.+||++|+.++++. .+.+..+....+.+
T Consensus 238 ~~~~e~~~~~~~~~~-~~~~~~~~~~~~G~~~aas~~~~l~~~~~~~~~~~~p~~~~~~~~~~~--~~~~~~~~~~~~~~ 314 (332)
T cd00825 238 GDVKELKLLRSEFGD-KSPAVSATKAMTGNLSSAAVVLAVDEAVLMLEHGFIPPSIHIEELDEA--GLNIVTETTPRELR 314 (332)
T ss_pred CCHHHHHHHHHHhCC-CCceeECCCcccccchhHhHHHHHHHHHHHHhcCccCCCCCCCCCCcc--cCcccCCCCCCCCC
Confidence 999999999998865 368899999999999999999999999999999999999999999883 33344444556678
Q ss_pred EEEEEcccccCeeeEEEE
Q 012221 446 VAISNSFGFGGHNSVVAF 463 (468)
Q Consensus 446 ~~l~~s~g~gG~n~~~vl 463 (468)
.+++++||+||+++++||
T Consensus 315 ~~l~~~~G~Gg~~~~~vl 332 (332)
T cd00825 315 TALLNGFGLGGTNATLVL 332 (332)
T ss_pred EEEEeeecCCCeeEEEeC
Confidence 999999999999999986
|
Members are involved in the synthesis of fatty acids and polyketides, a diverse group of natural products. Both pathways are an iterative series of additions of small carbon units, usually acetate, to a nascent acyl group. There are 2 classes of decarboxylating condensing enzymes, which can be distinguished by sequence similarity, type of active site residues and type of primer units (acetyl CoA or acyl carrier protein (ACP) linked units). |
| >PRK06147 3-oxoacyl-(acyl carrier protein) synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-43 Score=346.07 Aligned_cols=316 Identities=18% Similarity=0.155 Sum_probs=246.8
Q ss_pred CCCcEEEEeeceeccCCCCHHHHHHHHHcCCCCccccCCCCCCCCCCccccccCCCCCCCCCCccccccCCHHHHHHHHH
Q 012221 54 PKKRVVITGMGLVSVFGNDVDAYYNKLLDGESGITMIDRFDASKFPTRFGGQIRGFSAEGYIDGKNDRRLDDCLRYCIVA 133 (468)
Q Consensus 54 ~~~~V~ItG~g~~~p~g~~~~~~~~~L~~G~~~i~~~~~~~~~~~~~~~~g~v~~~d~~~~i~~~~~~~~d~~~~l~l~a 133 (468)
|+++|+|+|+|+++|.|.+.++.|++|++|.+.....+.++....+..... ..+..+......+..+|+..|
T Consensus 1 ~~~~v~I~~~g~vs~lG~~~~~~~aa~ragi~~~~~~~~~~~~~~~~i~~~--------~~~~~~~~~~~~r~~~La~~A 72 (348)
T PRK06147 1 MMRALAIVGSGMVTAVGLDAPSSCAAIRARLDNFQETRFIDPPGGEWLIGA--------PVPLPPPWRGPERLAEMAAPA 72 (348)
T ss_pred CCCceEEEecceeecCcCCHHHHHHHHHcccccccccccccCCCCCceEee--------cCcCCcccCchHHHHHHHHHH
Confidence 467899999999999999999999999999887755443332101000000 011112222345778999999
Q ss_pred HHHHHHHcCCCCccccccccccceEEEeecCCCccchHHHHHHHHHhCCCCcCCcCcchhhhhhhHHHHhhhhCC--CCc
Q 012221 134 GKKALEDADLGADISKKIDKERAGVLVGTGMGGLTVFSDGVQALIEKGHRKITPFFIPYAITNMGSALLAIDLGF--MGP 211 (468)
Q Consensus 134 ~~~AL~dAgl~~~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~ia~~lgl--~Gp 211 (468)
+++||++++. .+..+++++++....+ ....+..+.. ..+..++..+|+ +++
T Consensus 73 l~~aL~~a~~-------~~~~~i~lil~~~~~~----------------~~~~~~~~~~----~~~~~~~~~lG~~~~~~ 125 (348)
T PRK06147 73 IAEALEGLPA-------LDASEAPLLLCVAEEE----------------RPGRPPDLEE----RLLRELEARLGLRLEPG 125 (348)
T ss_pred HHHHHHhccc-------ccccCCcEEEEeCchh----------------cCCCCcchHH----HHHHHHHHHhCCCCCCC
Confidence 9999999983 1234567787754210 0111111111 224455666676 678
Q ss_pred ceeecccChHHHHHHHHHHHHHHhCCCCEEEEEeeccccchhhhhHhhhccccccCCCCCCCCCCCCCCCCCCeeeccee
Q 012221 212 NYSISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWDKDRDGFVMGEGA 291 (468)
Q Consensus 212 ~~~v~~acas~l~Al~~A~~~I~~G~~d~~lvgG~e~~~~p~~~~~~~~~~~l~~~~~~~~~~~rpfd~~~~G~v~gEGa 291 (468)
+++|.++|+|++.||..|+++|++|++|.+||||+|.+..+..+..|...+.+.. +.+++|+++||||
T Consensus 126 ~~~i~~~casg~~Al~~A~~~i~~G~~~~~lvgg~d~~~~~~~~~~~~~~~~l~~------------~~~~~G~v~GEGA 193 (348)
T PRK06147 126 SAVIARGRVSGAVALAQARRLIAAGGCPRVLVAGVDSLLTGPTLAHYEARDRLLT------------SQNSNGFIPGEAA 193 (348)
T ss_pred cccccccchHHHHHHHHHHHHHHcCCCCEEEEEeeccccCHHHHHHHHHhhccCC------------CCCCCceeeeceE
Confidence 8999999999999999999999999999999999999888877777777655542 2368999999999
Q ss_pred EEEEecchhHHHhcCCceEEEEEEEEEcCCCCCCCC-CCCChHHHHHHHHHHHHHcCCCCCCcCEEEEccCCCccCCHHH
Q 012221 292 GVLVMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTD-PRADGLGVSSCIESSLEDAGVSPEEVNYINAHATSTLAGDLAE 370 (468)
Q Consensus 292 aavvL~~~~~A~~~g~~i~a~i~g~~~~~d~~~~~~-~~~~~~~~~~~i~~al~~Agl~~~dId~v~~h~~gt~~~D~~E 370 (468)
+++|||++++|++++++||+ .|++...++.+... +.+++.++.++|+++|+++|++|+|||||++|+|||+.+|..|
T Consensus 194 ~a~vLe~~~~A~~rga~i~a--~g~~~~~~~~~~~~~~p~~g~gl~~ai~~AL~~agl~~~dId~v~ah~~gt~~~d~~e 271 (348)
T PRK06147 194 AAVLLGRPAGGEAPGLPLLG--LGLGREPAPVGESEDLPLRGDGLTQAIRAALAEAGCGLEDMDYRIADLNGEQYRFKEA 271 (348)
T ss_pred EEEEEccHhhhhcCCCceEE--EEEeecCCCcccCCCCCCChHHHHHHHHHHHHHcCCCHHHCCEEEcCCCCCccchHHH
Confidence 99999999999999999999 67777777654442 2247889999999999999999999999999999999999999
Q ss_pred HHHHHHHhcc-CCCceeeecccccCccccchhHHHHHHHHHHHhcCCcC
Q 012221 371 INAIKKVFKN-TTGIKINATKSMIGHCLGAAGGLEAIATVKAITTGWLH 418 (468)
Q Consensus 371 ~~al~~~f~~-~~~~~v~s~k~~~Gh~~~AsG~~~l~~~~~~l~~~~~p 418 (468)
..++.++|+. ....++++.|+++||+++|+|+++++.++++|++|++|
T Consensus 272 ~~A~~~~f~~~~~~~~~~~~k~~~Gh~~aAaG~~~~~~a~~~~~~g~~~ 320 (348)
T PRK06147 272 ALAEMRLFRVRKEFFDLWHPAECIGEIGAAIGPALLGVALAASRKGYGP 320 (348)
T ss_pred HHHHHHHhhhccCCCceecchHhhcchHHHHHHHHHHHHHHHHHcCcCC
Confidence 9999999986 34578999999999999999999999999999999887
|
|
| >PF00109 ketoacyl-synt: Beta-ketoacyl synthase, N-terminal domain; InterPro: IPR014030 Beta-ketoacyl-ACP synthase 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-42 Score=325.15 Aligned_cols=236 Identities=44% Similarity=0.741 Sum_probs=188.9
Q ss_pred CCcEEEEeeceeccCCCCHHHHHHHHHcCCCCccccC-CCCCCCC---CCccccccCC----------CCCCCC-CCccc
Q 012221 55 KKRVVITGMGLVSVFGNDVDAYYNKLLDGESGITMID-RFDASKF---PTRFGGQIRG----------FSAEGY-IDGKN 119 (468)
Q Consensus 55 ~~~V~ItG~g~~~p~g~~~~~~~~~L~~G~~~i~~~~-~~~~~~~---~~~~~g~v~~----------~d~~~~-i~~~~ 119 (468)
|++|||||||+++|.|.+.++||++|.+|++++.+++ +|+...+ +....+.++. |+..++ +++++
T Consensus 1 m~~V~ItG~g~~~p~g~~~~~~w~~L~~g~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (254)
T PF00109_consen 1 MRRVVITGMGCVTPGGDGLEEFWEALLSGRSGIRPIPERWDPSDYYDPPSRVAGEIDDKKGGFIDDFDFDAYFFGIPPRE 80 (254)
T ss_dssp -S-EEEEEEEEEBTTBSSHHHHHHHHHTT---EEESCSSSCHTTSTTSSCSEEECBSSSEESSSTTTCGGGTSTCHHHHH
T ss_pred CCEEEEEEEEEECcCCCCHHHHHhhhccCceeeeeeccccccccccccCCcccccccccccceeeecccccccccccchh
Confidence 5799999999999999999999999999999999888 6776666 4566666654 344333 55667
Q ss_pred cccCCHHHHHHHHHHHHHHHHcCCCCccccccccc-cceEEEeecCCCccchHHHHHHHHHhC--CCCcCCcCcchhhhh
Q 012221 120 DRRLDDCLRYCIVAGKKALEDADLGADISKKIDKE-RAGVLVGTGMGGLTVFSDGVQALIEKG--HRKITPFFIPYAITN 196 (468)
Q Consensus 120 ~~~~d~~~~l~l~a~~~AL~dAgl~~~~~~~~~~~-~~gv~~g~~~g~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~n 196 (468)
.++||++++|++.++++||+|||+ ....++.. |+||++|++.+.+ +.+..+.... ....+|..+..++.|
T Consensus 81 ~~~~~~~~~~~l~aa~~Al~dAg~---~~~~~~~~~r~gv~~G~~~~~~----~~~~~l~~~~~~~~~~~~~~~~~~~~~ 153 (254)
T PF00109_consen 81 ARRMDRQSRLALAAAREALEDAGL---DPDDLDGERRVGVFVGSSSGDY----EFYRALDEDGETPRDVSPWFVPNTLPN 153 (254)
T ss_dssp HHTS-HHHHHHHHHHHHHHHHHTS---TGGGHTGGGTEEEEEEESSSHH----HHHHHHHHHTTCGGGSHTTHHHHHSTT
T ss_pred hhhhhhhhhHHHHHhhhhcccccc---cccccccccceeeccccccccc----cccccccccccccccccccccCccccc
Confidence 789999999999999999999999 44555555 5999999998832 4444555444 456677555567999
Q ss_pred hhHHHHhhhhCCCCcceeecccChHHHHHHHHHHHHHHhCCCCEEEEEeeccccchhhhhHhhhccccccCCCCCCCCCC
Q 012221 197 MGSALLAIDLGFMGPNYSISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASR 276 (468)
Q Consensus 197 ~~a~~ia~~lgl~Gp~~~v~~acas~l~Al~~A~~~I~~G~~d~~lvgG~e~~~~p~~~~~~~~~~~l~~~~~~~~~~~r 276 (468)
.++++|++.||++||+++|+++|+||+.||++|+++|++|++|+|||||+|..++|..+..|..++.++. ++.++
T Consensus 154 ~~a~~ia~~~gl~G~~~tv~~acaSgl~Al~~A~~~I~~G~~d~~lvgg~d~~~~~~~~~~~~~~~~~s~-----~~~~~ 228 (254)
T PF00109_consen 154 SAAGRIAILFGLRGPSYTVSTACASGLAALEAAYRAIRSGEADVALVGGVDAPLSPFILAGFSALGALSA-----DGPCR 228 (254)
T ss_dssp HHHHHHHHHHTB-SSEEEEE-GGGHHHHHHHHHHHHHHTTSSSEEEEEEEE--SSHHHHHHHHHTTBB-T-----TSGGG
T ss_pred ccccchhhhcCCCCccccccccccccccccchhccccccccccccccccccccccccccccccccccccc-----ccccc
Confidence 9999999999999999999999999999999999999999999999999998899999999999998875 25699
Q ss_pred CCCCCCCCeeecceeEEEEecchhHH
Q 012221 277 PWDKDRDGFVMGEGAGVLVMESLEHA 302 (468)
Q Consensus 277 pfd~~~~G~v~gEGaaavvL~~~~~A 302 (468)
|||.+++|+++|||+++||||++++|
T Consensus 229 pf~~~~~G~v~gEGa~~~vLe~~~~A 254 (254)
T PF00109_consen 229 PFDPFADGFVLGEGAGALVLERLEHA 254 (254)
T ss_dssp STBTTB-SB-BB-EEEEEEEEEHHHH
T ss_pred ccCCCCCCEEEECceEEEEEEEhhhC
Confidence 99999999999999999999999876
|
3.1.41 from EC (KAS) [] is the enzyme that catalyzes the condensation of malonyl-ACP with the growing fatty acid chain. It is found as a component of a number of enzymatic systems, including fatty acid synthetase (FAS), which catalyzes the formation of long-chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH; the multi-functional 6-methysalicylic acid synthase (MSAS) from Penicillium patulum [], which is involved in the biosynthesis of a polyketide antibiotic; polyketide antibiotic synthase enzyme systems; Emericella nidulans multifunctional protein Wa, which is involved in the biosynthesis of conidial green pigment; Rhizobium nodulation protein nodE, which probably acts as a beta-ketoacyl synthase in the synthesis of the nodulation Nod factor fatty acyl chain; and yeast mitochondrial protein CEM1. The condensation reaction is a two step process, first the acyl component of an activated acyl primer is transferred to a cysteine residue of the enzyme and is then condensed with an activated malonyl donor with the concomitant release of carbon dioxide. This entry represents the N-terminal domain of beta-ketoacyl-ACP synthases. ; PDB: 1J3N_B 3KZU_C 1W0I_A 2IX4_A 1F91_B 2BYZ_D 2AQB_C 2BZ3_C 1H4F_C 2VB9_B .... |
| >cd00327 cond_enzymes Condensing enzymes; Family of enzymes that catalyze a (decarboxylating or non-decarboxylating) Claisen-like condensation reaction | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-31 Score=253.07 Aligned_cols=247 Identities=35% Similarity=0.512 Sum_probs=214.0
Q ss_pred HHHHHHHHHHHHHHHcCCCCccccccccccceEEEeecCCCccchHHHHHHHHHhCCCCcCCcCcchhhhhhhHHHHhhh
Q 012221 126 CLRYCIVAGKKALEDADLGADISKKIDKERAGVLVGTGMGGLTVFSDGVQALIEKGHRKITPFFIPYAITNMGSALLAID 205 (468)
Q Consensus 126 ~~~l~l~a~~~AL~dAgl~~~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~ia~~ 205 (468)
...|+.+|+++||+++|+ ++++++ ++++++..++.. .+..+.+++..
T Consensus 7 ~~~l~~~A~~~al~~ag~---~~~~i~----~li~~~~~~~~~--------------------------~~~~a~~i~~~ 53 (254)
T cd00327 7 ASELGFEAAEQAIADAGL---SKGPIV----GVIVGTTGGSGE--------------------------FSGAAGQLAYH 53 (254)
T ss_pred HHHHHHHHHHHHHHHcCC---CCCCce----EEEEEECCCCcc--------------------------ccHHHHHHHHH
Confidence 578999999999999999 444554 799998654321 24457889999
Q ss_pred hCC-CCcceeecccChHHHHHHHHHHHHHHhCCCCEEEEEeeccccchhhhhHhhhccccccCCCCCCCCCCCCCCCCCC
Q 012221 206 LGF-MGPNYSISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWDKDRDG 284 (468)
Q Consensus 206 lgl-~Gp~~~v~~acas~l~Al~~A~~~I~~G~~d~~lvgG~e~~~~p~~~~~~~~~~~l~~~~~~~~~~~rpfd~~~~G 284 (468)
+|+ ++|+++++++|+|++.||++|+++|++|++|.+||+|+|.
T Consensus 54 lg~~~~~~~~i~~~C~s~~~al~~A~~~i~~g~~~~~lv~~~e~------------------------------------ 97 (254)
T cd00327 54 LGISGGPAYSVNQACATGLTALALAVQQVQNGKADIVLAGGSEE------------------------------------ 97 (254)
T ss_pred hCCCCCCcceeccHhHHHHHHHHHHHHHHHCCCCCEEEEEecce------------------------------------
Confidence 999 8999999999999999999999999999999999999995
Q ss_pred eeecceeEEEEecchhHHHhcCCceEEEEEEEEEcCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCcCEEEEccCCCc
Q 012221 285 FVMGEGAGVLVMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAGVSPEEVNYINAHATSTL 364 (468)
Q Consensus 285 ~v~gEGaaavvL~~~~~A~~~g~~i~a~i~g~~~~~d~~~~~~~~~~~~~~~~~i~~al~~Agl~~~dId~v~~h~~gt~ 364 (468)
+++|||++++||++.+.+.+++.+++++|.++....++.+.. +.+......++++++|+++|++++|||+++.|++++.
T Consensus 98 ~~~gdGAaa~vL~~~~~a~~~~~~~~~~i~~~~~~~~~~~~~-~~~~~~~~~~~i~~~l~~ag~~~~did~~~~h~~~~~ 176 (254)
T cd00327 98 FVFGDGAAAAVVESEEHALRRGAHPQAEIVSTAATFDGASMV-PAVSGEGLARAARKALEGAGLTPSDIDYVEAHGTGTP 176 (254)
T ss_pred eeecceEEEEEECcHHHHHHCCCceEEEEEEEEEcCCCCCCC-CCCChHHHHHHHHHHHHHcCCCHHHCCEEEccCCcCc
Confidence 589999999999999999999999999999998887765432 3346678899999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHhccCCCceeeecccccCccccchhHHHHHHHHHHHhcCCcCCCCCCCCCCCCCCcccccccccccCc
Q 012221 365 AGDLAEINAIKKVFKNTTGIKINATKSMIGHCLGAAGGLEAIATVKAITTGWLHPSINQFNPEPSVEFDTVANKKQQHEV 444 (468)
Q Consensus 365 ~~D~~E~~al~~~f~~~~~~~v~s~k~~~Gh~~~AsG~~~l~~~~~~l~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (468)
..|..|.+.....++. ..+++.+.+..+||+.+|+|++.+..++++++.+.+|| ...+.
T Consensus 177 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~G~~~~as~~~~l~~~~~~~~~~~~~~--------------------~~~~~ 235 (254)
T cd00327 177 IGDAVELALGLDPDGV-RSPAVSATLIMTGHPLGAAGLAILDELLLMLEHEFIPP--------------------TPREP 235 (254)
T ss_pred cccHHHHHHHHHHhCC-CCCceeccccccccchHHHHHHHHHHHHHHHhCCCcCC--------------------CCCCc
Confidence 9999998877666554 34789999999999999999999999999999999987 12234
Q ss_pred cEEEEEcccccCeeeEEEE
Q 012221 445 NVAISNSFGFGGHNSVVAF 463 (468)
Q Consensus 445 ~~~l~~s~g~gG~n~~~vl 463 (468)
+.+++++||+||+++++||
T Consensus 236 ~~~l~~~~g~Gg~~~~~~l 254 (254)
T cd00327 236 RTVLLLGFGLGGTNAAVVL 254 (254)
T ss_pred CEEEEeeEcCCCcceEEEC
Confidence 6789999999999999985
|
Members are share strong structural similarity, and are involved in the synthesis and degradation of fatty acids, and the production of polyketides, a diverse group of natural products. |
| >PRK06633 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-27 Score=238.43 Aligned_cols=270 Identities=22% Similarity=0.294 Sum_probs=191.7
Q ss_pred HHHHHHHHHHHHHHHcCCCCccccccccccceEEEeecCCCccchHHHHHHHHHhCCCCcCCcCcchhhhhhhHHHHhhh
Q 012221 126 CLRYCIVAGKKALEDADLGADISKKIDKERAGVLVGTGMGGLTVFSDGVQALIEKGHRKITPFFIPYAITNMGSALLAID 205 (468)
Q Consensus 126 ~~~l~l~a~~~AL~dAgl~~~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~ia~~ 205 (468)
...|+.++.+++|+|+|+ +++++| .|++|+...... ....+..++..
T Consensus 27 ~~~L~~~a~~~al~~agi---~~~~Id----~vv~G~~~~~~~--------------------------g~~~~r~~~~~ 73 (392)
T PRK06633 27 APMLAAHLIKDILQNSKI---DPALVN----EVILGQVITGGS--------------------------GQNPARQTLIH 73 (392)
T ss_pred HHHHHHHHHHHHHHHcCC---CHHHcC----EEEEEecCcccc--------------------------ccHHHHHHHHH
Confidence 356889999999999999 666777 688887542211 01123456677
Q ss_pred hCCC-C-cceeecccChHHHHHHHHHHHHHHhCCCCEEEEEeecccc-chhh-h-h-----H---------hhhc-cccc
Q 012221 206 LGFM-G-PNYSISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAI-IPIG-L-G-----G---------FVAC-RALS 265 (468)
Q Consensus 206 lgl~-G-p~~~v~~acas~l~Al~~A~~~I~~G~~d~~lvgG~e~~~-~p~~-~-~-----~---------~~~~-~~l~ 265 (468)
.|+. + |.++|+++|+||+.|+..|++.|++|++|++||||+|++. .|.. . . . +... ..+.
T Consensus 74 ~Gl~~~~p~~~V~~~CaSG~~Ai~~A~~~I~sG~~dvvla~G~E~ms~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (392)
T PRK06633 74 AGIPKEVPGYTINKVCGSGLKSVALAANSIMTGDNEIVIAGGQENMSLGMHGSYIRAGAKFGDIKMVDLMQYDGLTDVFS 153 (392)
T ss_pred CCCCCCccchhhcchhHHHHHHHHHHHHHHHcCCCCEEEEcccccCCCCCcchhcccccccCcchhhhhhcccccccccC
Confidence 8886 3 9999999999999999999999999999999999999754 2210 0 0 0 0000 0000
Q ss_pred c-------------CC------------------CCCCCC-C------------------------------------CC
Q 012221 266 Q-------------RN------------------DDPQTA-S------------------------------------RP 277 (468)
Q Consensus 266 ~-------------~~------------------~~~~~~-~------------------------------------rp 277 (468)
. .+ .+|... . +|
T Consensus 154 ~~~~a~~a~~~~~~~gitre~~d~~Avksh~~a~~np~A~~~~~ei~p~~v~~~~~~~~~~~d~~~rp~~~~e~l~~l~p 233 (392)
T PRK06633 154 GVFMGITAENISKQFNISRQEQDEFALSSHKKAAKAQLAGIFKDEILPIEVTIKKTTSLFDHDETVRPDTSLEILSKLRP 233 (392)
T ss_pred cchHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhHHcCCCcCceeeEEeccCCCceeeccCCCCCCCCCHHHHccCCC
Confidence 0 00 001100 0 11
Q ss_pred -CCC-----CCCCeeecceeEEEEecchhHHHhcCCceEEEEEEEEEcCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCC
Q 012221 278 -WDK-----DRDGFVMGEGAGVLVMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAGVSPE 351 (468)
Q Consensus 278 -fd~-----~~~G~v~gEGaaavvL~~~~~A~~~g~~i~a~i~g~~~~~d~~~~~~~~~~~~~~~~~i~~al~~Agl~~~ 351 (468)
|+. ..|...++|||+++||++++.|+++|.+++++|+|++...+ .|...+.+...+++++|+++||+|+
T Consensus 234 ~~~~~g~lt~~n~s~~sDGAaalvl~see~A~~~g~~p~a~I~g~~~~~~-----~~~~~~~~~~~a~~~Al~~AGl~p~ 308 (392)
T PRK06633 234 AFDKNGVVTAGNASSINDGAACLMVVSEEALKKHNLTPLARIVSYASAGV-----DPSIMGTAPVPASQKALSKAGWSVN 308 (392)
T ss_pred ccCCCCCEechhcCCccCceEEEEEecHHHHHHCCCCeeEEEEEEEEecC-----CcchhchHHHHHHHHHHHHcCCCHH
Confidence 111 01224589999999999999999999999999999998864 2333345668899999999999999
Q ss_pred CcCEEEEccCCCccCCHHHHHHHHHHhc-cCCCceeeecccccCccccchhHHHHHHHHHHHhcCCcCCCCCCCCCCCCC
Q 012221 352 EVNYINAHATSTLAGDLAEINAIKKVFK-NTTGIKINATKSMIGHCLGAAGGLEAIATVKAITTGWLHPSINQFNPEPSV 430 (468)
Q Consensus 352 dId~v~~h~~gt~~~D~~E~~al~~~f~-~~~~~~v~s~k~~~Gh~~~AsG~~~l~~~~~~l~~~~~pp~~~~~~~~~~~ 430 (468)
||||+|.|..++. .|+..++ .++ +..+++++++|..+||++||+|+++++.+++||+++
T Consensus 309 DID~~ei~dafa~----~~l~~~~-~l~~~~~~vN~sGg~~a~GHplgAtG~~~~~~~~~qL~~~--------------- 368 (392)
T PRK06633 309 DLEVIEVNEAFAA----QSIYVNR-EMKWDMEKVNINGGAIAIGHPIGASGGRVLITLIHGLRRA--------------- 368 (392)
T ss_pred HcCeeehhhHHHH----HHHHHHh-hhCCCccccCCCCchHhhCCcHHHHHHHHHHHHHHHHHhc---------------
Confidence 9999998844332 1222111 122 234789999999999999999999999999999862
Q ss_pred CcccccccccccCccEEEEEcccccCeeeEEEEee
Q 012221 431 EFDTVANKKQQHEVNVAISNSFGFGGHNSVVAFSA 465 (468)
Q Consensus 431 ~~~~~~~~~~~~~~~~~l~~s~g~gG~n~~~vl~~ 465 (468)
..++++++..+-||...++||++
T Consensus 369 ------------~~~~g~~~~c~~gG~g~a~~~e~ 391 (392)
T PRK06633 369 ------------KAKKGLVTLCIGGGMGMAMCVEA 391 (392)
T ss_pred ------------CCCeEEEEEecccChhheEEEEe
Confidence 12467777778888989999986
|
|
| >PRK05656 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.3e-27 Score=234.10 Aligned_cols=269 Identities=23% Similarity=0.315 Sum_probs=203.3
Q ss_pred HHHHHHHHHHHHHHHcCCCCccccccccccceEEEeecCCCccchHHHHHHHHHhCCCCcCCcCcchhhhhhhHHHHhhh
Q 012221 126 CLRYCIVAGKKALEDADLGADISKKIDKERAGVLVGTGMGGLTVFSDGVQALIEKGHRKITPFFIPYAITNMGSALLAID 205 (468)
Q Consensus 126 ~~~l~l~a~~~AL~dAgl~~~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~ia~~ 205 (468)
...|+.+|+++||+|+|+ +++++| .|++|+...... ..+ .+..++..
T Consensus 26 ~~~La~~A~~~AL~~agl---~~~dID----~vi~g~~~~~~~-------------------------~~~-~a~~va~~ 72 (393)
T PRK05656 26 AVELGAAVIRRLLEQTGL---DPAQVD----EVILGQVLTAGA-------------------------GQN-PARQAAIK 72 (393)
T ss_pred HHHHHHHHHHHHHHHcCC---CHHHCC----EEEEEEecCCCC-------------------------CCc-HHHHHHHH
Confidence 367899999999999999 667777 788887531100 011 24567788
Q ss_pred hCCC--CcceeecccChHHHHHHHHHHHHHHhCCCCEEEEEeeccccc-hhh---------------hhHh------hhc
Q 012221 206 LGFM--GPNYSISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAII-PIG---------------LGGF------VAC 261 (468)
Q Consensus 206 lgl~--Gp~~~v~~acas~l~Al~~A~~~I~~G~~d~~lvgG~e~~~~-p~~---------------~~~~------~~~ 261 (468)
+|+. -|+++|+++|+|++.||+.|+++|++|.+|++||+|+|.+.. |+. +..+ ...
T Consensus 73 lGl~~~~p~~~V~~~Casg~~ai~~A~~~I~sG~~d~vLv~G~E~ms~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (393)
T PRK05656 73 AGLPHSVPAMTLNKVCGSGLKALHLAAQAIRCGDAEVIIAGGQENMSLAPYVLPGARTGLRMGHAQLVDSMITDGLWDAF 152 (393)
T ss_pred cCCCCCcceEEecccchhHHHHHHHHHHHHHcCCCCEEEEEEEhhhccCccccccccccccccchhhhhhhccccccccc
Confidence 8986 489999999999999999999999999999999999996432 110 0000 000
Q ss_pred -c---------ccccCCC-------------------CCCCCC-------------------------------------
Q 012221 262 -R---------ALSQRND-------------------DPQTAS------------------------------------- 275 (468)
Q Consensus 262 -~---------~l~~~~~-------------------~~~~~~------------------------------------- 275 (468)
+ .+.+.+. .|.+..
T Consensus 153 ~~~~~a~~a~~~~~~~gitre~~d~~Av~sh~~a~~a~~~a~~~~ei~pv~~~~~~~~~~~~~~D~~~r~~~~~e~l~~l 232 (393)
T PRK05656 153 NDYHMGITAENLVEKYGISREAQDAFAAASQQKAVAAIEAGRFDDEITPILIPQRKGEPLAFATDEQPRAGTTAESLAKL 232 (393)
T ss_pred cCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHcCCCcceeeeEEeccCCCCceEeccCCCCCCCCCHHHHhcC
Confidence 0 0000000 011111
Q ss_pred CCCCCCCCCee-------ecceeEEEEecchhHHHhcCCceEEEEEEEEEcCCCCCCCCCCCChHHHHHHHHHHHHHcCC
Q 012221 276 RPWDKDRDGFV-------MGEGAGVLVMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAGV 348 (468)
Q Consensus 276 rpfd~~~~G~v-------~gEGaaavvL~~~~~A~~~g~~i~a~i~g~~~~~d~~~~~~~~~~~~~~~~~i~~al~~Agl 348 (468)
+|+.. .+|.+ ++|||+++||++++.|+++|.+++++|+|++... ..|.+.+.+...+++++|+++|+
T Consensus 233 ~p~~~-~~g~lt~~~~s~~~DGAaa~vl~s~~~A~~~g~~~~a~i~g~~~~~-----~~~~~~~~~~~~a~~~al~~agl 306 (393)
T PRK05656 233 KPAFK-KDGSVTAGNASSLNDGAAAVLLMSAAKAKALGLPVLAKIAAYANAG-----VDPAIMGIGPVSATRRCLDKAGW 306 (393)
T ss_pred CCCcC-CCCCEEccccCCCCCceEEEEEecHHHHHHCCCCeeEEEEEEEEec-----CCCcccchhHHHHHHHHHHHcCC
Confidence 11111 23445 8999999999999999999999999999999875 34555666778999999999999
Q ss_pred CCCCcCEEEEccCCCccCCHHHHHHHHHHhcc-CCCceeeecccccCccccchhHHHHHHHHHHHhcCCcCCCCCCCCCC
Q 012221 349 SPEEVNYINAHATSTLAGDLAEINAIKKVFKN-TTGIKINATKSMIGHCLGAAGGLEAIATVKAITTGWLHPSINQFNPE 427 (468)
Q Consensus 349 ~~~dId~v~~h~~gt~~~D~~E~~al~~~f~~-~~~~~v~s~k~~~Gh~~~AsG~~~l~~~~~~l~~~~~pp~~~~~~~~ 427 (468)
+|+||||+|+|++ +..|..++.+.|+. ..+++++++|..+||++||+|++.++.++++|+..
T Consensus 307 ~~~dId~~e~~d~-----f~~~~~~~~e~lg~~~~~vn~~Gg~~a~GHp~gAsG~~~~~~l~~~l~~~------------ 369 (393)
T PRK05656 307 SLAELDLIEANEA-----FAAQSLAVGKELGWDAAKVNVNGGAIALGHPIGASGCRVLVTLLHEMIRR------------ 369 (393)
T ss_pred CHHHCCEEEecCc-----cHHHHHHHHHHhCCCCccCCcCCCHHHhCccHHHHHHHHHHHHHHHHHHc------------
Confidence 9999999999976 44777888888875 35789999999999999999999999999988741
Q ss_pred CCCCcccccccccccCccEEEEEcccccCeeeEEEEee
Q 012221 428 PSVEFDTVANKKQQHEVNVAISNSFGFGGHNSVVAFSA 465 (468)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~l~~s~g~gG~n~~~vl~~ 465 (468)
..++++++...-||...++||++
T Consensus 370 ---------------~~~~gl~~~c~~gG~g~a~~~e~ 392 (393)
T PRK05656 370 ---------------DAKKGLATLCIGGGQGVALAIER 392 (393)
T ss_pred ---------------CCCEEEEEEcccCcceEEEEEec
Confidence 24688988888999999999985
|
|
| >PRK09051 beta-ketothiolase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.4e-26 Score=231.85 Aligned_cols=272 Identities=21% Similarity=0.285 Sum_probs=197.1
Q ss_pred HHHHHHHHHHHHHHHcCCCCccccccccccceEEEeecCCCccchHHHHHHHHHhCCCCcCCcCcchhhhhhhHHHHhhh
Q 012221 126 CLRYCIVAGKKALEDADLGADISKKIDKERAGVLVGTGMGGLTVFSDGVQALIEKGHRKITPFFIPYAITNMGSALLAID 205 (468)
Q Consensus 126 ~~~l~l~a~~~AL~dAgl~~~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~ia~~ 205 (468)
...|+.+|+++||+++|+ +++++| .|++|+....... ....+..++..
T Consensus 27 ~~eL~~~A~~~AL~~agi---~~~dID----~vi~g~~~~~~~~-------------------------~~~~a~~~~~~ 74 (394)
T PRK09051 27 PTDLGATVVREALARAGV---DPDQVG----HVVFGHVIPTEPR-------------------------DMYLSRVAAIN 74 (394)
T ss_pred HHHHHHHHHHHHHHHcCC---CHHHcC----EEEEeeeccccCC-------------------------CccHHHHHHHH
Confidence 367899999999999999 666777 6888875321100 00113334455
Q ss_pred hCCC--CcceeecccChHHHHHHHHHHHHHHhCCCCEEEEEeeccccc-hh---h------------hh----Hhhh---
Q 012221 206 LGFM--GPNYSISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAII-PI---G------------LG----GFVA--- 260 (468)
Q Consensus 206 lgl~--Gp~~~v~~acas~l~Al~~A~~~I~~G~~d~~lvgG~e~~~~-p~---~------------~~----~~~~--- 260 (468)
+|+. -|.++|+++|+||+.|++.|+++|++|.+|++||+|+|.+.. |. . +. .+..
T Consensus 75 ~Gl~~~~p~~~V~~aCaSg~~Al~~A~~~I~sG~~d~vLvvG~E~mS~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (394)
T PRK09051 75 AGVPQETPAFNVNRLCGSGLQAIVSAAQAILLGDADVAIGGGAESMSRAPYLLPAARWGARMGDAKLVDMMVGALHDPFG 154 (394)
T ss_pred cCCCCCCceEEecccchHHHHHHHHHHHHHHcCCCCEEEEEeehhcccCcccccccccccccCCchhhhhhccccccccc
Confidence 6884 499999999999999999999999999999999999997432 11 0 00 0000
Q ss_pred ---cccc----------c-----------c----CC-----------------------CCCCCCC------------CC
Q 012221 261 ---CRAL----------S-----------Q----RN-----------------------DDPQTAS------------RP 277 (468)
Q Consensus 261 ---~~~l----------~-----------~----~~-----------------------~~~~~~~------------rp 277 (468)
++.. + + .+ .+|+... +|
T Consensus 155 ~~~~~~~a~~~~~~ygitre~~d~~avksh~~A~~a~~~g~~~~ei~p~~~~~~~~~~~~~~da~~r~~~t~e~v~~~~~ 234 (394)
T PRK09051 155 TIHMGVTAENVAAKYGISREAQDALALESHRRAAAAIAAGYFKDQIVPVEIKTRKGEVVFDTDEHVRADTTLEDLAKLKP 234 (394)
T ss_pred CCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHcCCCcceeeeeeecCCCCCeEECCCCCCCCCCCHHHHcCCCC
Confidence 0000 0 0 00 0133222 23
Q ss_pred CCCCC-------CCeeecceeEEEEecchhHHHhcCCceEEEEEEEEEcCCCCCCCCCCCChHHHHHHHHHHHHHcCCCC
Q 012221 278 WDKDR-------DGFVMGEGAGVLVMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAGVSP 350 (468)
Q Consensus 278 fd~~~-------~G~v~gEGaaavvL~~~~~A~~~g~~i~a~i~g~~~~~d~~~~~~~~~~~~~~~~~i~~al~~Agl~~ 350 (468)
+.... +...++|||+++||++++.|+++|.+++++|+|++.... .|...+.+...+++++|++|||+|
T Consensus 235 v~~~~~g~lt~~~~s~~~DGAaa~vl~s~~~a~~~g~~~~~~I~g~~~~~~-----~~~~~~~~~~~a~~~al~~agi~~ 309 (394)
T PRK09051 235 VFKKENGTVTAGNASGINDGAAAVVLAEADAAEARGLKPLARLVGYAHAGV-----DPEYMGIGPVPATQKALERAGLTV 309 (394)
T ss_pred cccCCCccEeCCcCCCCCCceEEEEEecHHHHHHCCCCccEEEEEEEEecc-----CCCcccccHHHHHHHHHHHcCCCH
Confidence 32211 223368999999999999999999999999999998863 233344566889999999999999
Q ss_pred CCcCEEEEccCCCccCCHHHHHHHHHHhcc-CCCceeeecccccCccccchhHHHHHHHHHHHhcCCcCCCCCCCCCCCC
Q 012221 351 EEVNYINAHATSTLAGDLAEINAIKKVFKN-TTGIKINATKSMIGHCLGAAGGLEAIATVKAITTGWLHPSINQFNPEPS 429 (468)
Q Consensus 351 ~dId~v~~h~~gt~~~D~~E~~al~~~f~~-~~~~~v~s~k~~~Gh~~~AsG~~~l~~~~~~l~~~~~pp~~~~~~~~~~ 429 (468)
+|||+||+|++++ ++..+..+.|+- ..++++++.+..+||++||+|++.++.++++|+++
T Consensus 310 ~did~~ei~d~f~-----~~~~~~~e~lg~~~~~vN~~GG~~a~Ghp~gAsG~~~~~~~~~~L~~~-------------- 370 (394)
T PRK09051 310 ADLDVIEANEAFA-----AQACAVTRELGLDPAKVNPNGSGISLGHPVGATGAIITVKALYELQRI-------------- 370 (394)
T ss_pred HHcCEEEecCccH-----HHHHHHHHHhCCCccccCCCccHHHhcchHHHHHHHHHHHHHHHHHhc--------------
Confidence 9999999997644 555666667764 34678888888999999999999999999999862
Q ss_pred CCcccccccccccCccEEEEEcccccCeeeEEEEeec
Q 012221 430 VEFDTVANKKQQHEVNVAISNSFGFGGHNSVVAFSAF 466 (468)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~l~~s~g~gG~n~~~vl~~~ 466 (468)
..++++++...-||...++||++.
T Consensus 371 -------------~~~~g~~~~c~~gG~g~a~~~e~~ 394 (394)
T PRK09051 371 -------------GGRYALVTMCIGGGQGIAAIFERL 394 (394)
T ss_pred -------------CCCEEEEEEccccChhhEEEEEeC
Confidence 135788888888899999999863
|
|
| >PRK06064 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1e-26 Score=234.22 Aligned_cols=289 Identities=24% Similarity=0.297 Sum_probs=201.1
Q ss_pred HHHHHHHHHHHHHHHcCCCCccccccccccceEEEeecCCCccchHHHHHHHHHhCCCCcCCcCcchhhhhhhHHHHhhh
Q 012221 126 CLRYCIVAGKKALEDADLGADISKKIDKERAGVLVGTGMGGLTVFSDGVQALIEKGHRKITPFFIPYAITNMGSALLAID 205 (468)
Q Consensus 126 ~~~l~l~a~~~AL~dAgl~~~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~ia~~ 205 (468)
...|+.+++++||+|+|+ +++++| ++++|+..++.... ....+..++..
T Consensus 22 ~~eLa~~a~~~Al~dagl---~~~~Id----~vi~g~~~~~~~~~------------------------~~~~a~~va~~ 70 (389)
T PRK06064 22 LRDLAVEAGLEALEDAGI---DGKDID----AMYVGNMSAGLFVS------------------------QEHIAALIADY 70 (389)
T ss_pred HHHHHHHHHHHHHHHcCC---CHHHCC----EEEEEecccccccc------------------------cccHHHHHHHH
Confidence 467899999999999999 566676 68887653321100 01135677888
Q ss_pred hCCC-CcceeecccChHHHHHHHHHHHHHHhCCCCEEEEEeeccccc-hh-------------------h-----hhHhh
Q 012221 206 LGFM-GPNYSISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAII-PI-------------------G-----LGGFV 259 (468)
Q Consensus 206 lgl~-Gp~~~v~~acas~l~Al~~A~~~I~~G~~d~~lvgG~e~~~~-p~-------------------~-----~~~~~ 259 (468)
+|++ .|.++|+++|+|++.||..|+++|++|++|++||+|.|.... +. . ...+.
T Consensus 71 lGl~~~~~~~v~~aCasg~~ai~~A~~~I~sG~~~~vLv~G~e~~s~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~al~ 150 (389)
T PRK06064 71 AGLAPIPATRVEAACASGGAALRQAYLAVASGEADVVLAAGVEKMTDVPTPDATEAIARAGDYEWEEFFGATFPGLYALI 150 (389)
T ss_pred cCCCCCCeeEEeCCcHHHHHHHHHHHHHHHCCCCCEEEEEEEEecccCcchhhhhhhhcccccccccccCCchHHHHHHH
Confidence 9998 599999999999999999999999999999999999986211 10 0 00000
Q ss_pred hccccccC------------------CCCCCCC----------------CCCCCCCCCCeeecceeEEEEecchhHHHhc
Q 012221 260 ACRALSQR------------------NDDPQTA----------------SRPWDKDRDGFVMGEGAGVLVMESLEHAMKR 305 (468)
Q Consensus 260 ~~~~l~~~------------------~~~~~~~----------------~rpfd~~~~G~v~gEGaaavvL~~~~~A~~~ 305 (468)
..+.+.+. ..+|... +.|+. .-|...++|||+++||++++.|+++
T Consensus 151 a~~~~~~yG~s~e~~a~~a~~~~~~A~~np~a~~~~~~t~~~~~~s~~i~~Pl~-~~d~~~~~dGAaa~vL~s~~~A~~~ 229 (389)
T PRK06064 151 ARRYMHKYGTTEEDLALVAVKNHYNGSKNPYAQFQKEITVEQVLNSPPVADPLK-LLDCSPITDGAAAVILASEEKAKEY 229 (389)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHhhCcHhhhCCCCCHHHHhcCCcccCCCc-hhhcCCCCCcceEEEEecHHHHHHh
Confidence 00000000 0011110 01211 2355578999999999999999998
Q ss_pred CCceEEEEEEEEEcCCCCCCCCC-C-CChHHHHHHHHHHHHHcCCCCCCcCEEEEccCCCccCCHHHHHHHHHHhc----
Q 012221 306 GAPIIAEYLGGAVNCDAYHMTDP-R-ADGLGVSSCIESSLEDAGVSPEEVNYINAHATSTLAGDLAEINAIKKVFK---- 379 (468)
Q Consensus 306 g~~i~a~i~g~~~~~d~~~~~~~-~-~~~~~~~~~i~~al~~Agl~~~dId~v~~h~~gt~~~D~~E~~al~~~f~---- 379 (468)
+.++ ++|+|++...+..+.... + ........+++++|+++||+++|||++|+|++++.. +.++++++.-...
T Consensus 230 ~~~~-v~I~g~g~~~~~~~~~~~~~~~~~~~~~~a~~~al~~aGi~~~did~~e~~d~ft~~-~~~~~e~lgl~~~G~~~ 307 (389)
T PRK06064 230 TDTP-VWIKASGQASDTIALHDRKDFTTLDAAVVAAEKAYKMAGIEPKDIDVAEVHDCFTIA-EILAYEDLGFAKKGEGG 307 (389)
T ss_pred cCCC-eEEEEEEEecCcccccccccccccHHHHHHHHHHHHHcCCCHHHCCEEEecCCCcHH-HHHHHHHcCCCCCCchH
Confidence 8665 599999998877654332 2 134566789999999999999999999999999974 5566666643321
Q ss_pred ----c-----CCCceeeecccc--cCccccchhHHHHHHHHHHHhcCCcCCCCCCCCCCCCCCcccccccccccCccEEE
Q 012221 380 ----N-----TTGIKINATKSM--IGHCLGAAGGLEAIATVKAITTGWLHPSINQFNPEPSVEFDTVANKKQQHEVNVAI 448 (468)
Q Consensus 380 ----~-----~~~~~v~s~k~~--~Gh~~~AsG~~~l~~~~~~l~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 448 (468)
+ ...++|+..++. +||+.+|+|+.+++++++||+.+-- ...+|....++++
T Consensus 308 ~~~~~g~~~~~g~~pvN~~GG~l~~Ghp~~a~G~~~~~e~~~qL~g~a~------------------~g~rqv~~a~~~l 369 (389)
T PRK06064 308 KLAREGQTYIGGDIPVNPSGGLKAKGHPVGATGVSQAVEIVWQLRGEAE------------------KGRQQVIGAGYGL 369 (389)
T ss_pred HHHHCCCccCCCCeeecCCCCcccCCCCcchhHHHHHHHHHHHHhCCCC------------------CCCccCCCccEEE
Confidence 0 124567776666 6999999999999999999998510 0233445668899
Q ss_pred EEccc-ccCeeeEEEEeec
Q 012221 449 SNSFG-FGGHNSVVAFSAF 466 (468)
Q Consensus 449 ~~s~g-~gG~n~~~vl~~~ 466 (468)
++++| .+.+++.+||++.
T Consensus 370 ~~~~g~~~~~~~~~vl~~~ 388 (389)
T PRK06064 370 THNVGGTGHTAVVHILSRK 388 (389)
T ss_pred EecCCCccceEEEEEEEec
Confidence 99887 4456777787763
|
|
| >PRK07516 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=8e-26 Score=227.36 Aligned_cols=286 Identities=22% Similarity=0.282 Sum_probs=192.1
Q ss_pred HHHHHHHHHHHHHHHcCCCCccccccccccceEEEeecCCCccchHHHHHHHHHhCCCCcCCcCcchhhhhhhHHHHhhh
Q 012221 126 CLRYCIVAGKKALEDADLGADISKKIDKERAGVLVGTGMGGLTVFSDGVQALIEKGHRKITPFFIPYAITNMGSALLAID 205 (468)
Q Consensus 126 ~~~l~l~a~~~AL~dAgl~~~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~ia~~ 205 (468)
...|+.+|+++||+|+|+ +++++| +|++|+..++... .. +. . +..+...
T Consensus 22 ~~eL~~eA~~~AL~dAgl---~~~dId----~vi~g~~~~~~~~-----------------~~-~~----~--~~~~~~~ 70 (389)
T PRK07516 22 LESLIVRVAREALAHAGI---AAGDVD----GIFLGHFNAGFSP-----------------QD-FP----A--SLVLQAD 70 (389)
T ss_pred HHHHHHHHHHHHHHHcCC---CHHHCC----EEEEEEecCCccc-----------------cc-cc----h--hHHHHHh
Confidence 357899999999999999 667777 7888875322110 00 00 0 1112233
Q ss_pred hCCCC-cceeecccChHHHHHHHHHHHHHHhCCCCEEEEEeeccccc-hhh---------------------h---hHhh
Q 012221 206 LGFMG-PNYSISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAII-PIG---------------------L---GGFV 259 (468)
Q Consensus 206 lgl~G-p~~~v~~acas~l~Al~~A~~~I~~G~~d~~lvgG~e~~~~-p~~---------------------~---~~~~ 259 (468)
++++. |.++|+++|+|++.||..|+++|++|++|.+||+|+|.+.. |.. + .++.
T Consensus 71 ~gl~~~p~~~v~~~CaSg~~Al~~A~~~I~sG~~d~vLvvg~e~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 150 (389)
T PRK07516 71 PALRFKPATRVENACATGSAAVYAALDAIEAGRARIVLVVGAEKMTATPTAEVGDILLGASYLKEEGDTPGGFAGVFGRI 150 (389)
T ss_pred cCCCCCceeeeccccHHHHHHHHHHHHHHHCCCCCEEEEEEehhhccCcchhhHHHhhhccccccccccCCCcHHHHHHH
Confidence 46654 88999999999999999999999999999999999997421 110 0 0000
Q ss_pred hccccccC------------------CCCCCCC----------------C----CCCCCCCCCeeecceeEEEEecchhH
Q 012221 260 ACRALSQR------------------NDDPQTA----------------S----RPWDKDRDGFVMGEGAGVLVMESLEH 301 (468)
Q Consensus 260 ~~~~l~~~------------------~~~~~~~----------------~----rpfd~~~~G~v~gEGaaavvL~~~~~ 301 (468)
..+.+.+. ..+|... . .|+. ..|...++|||+++||++++.
T Consensus 151 a~~y~~~yg~~~e~~a~vav~~~~~A~~nP~A~~~~~~t~~~~~~~~~~~~~i~~pl~-~~d~~~~~DGAaa~il~s~~~ 229 (389)
T PRK07516 151 AQAYFQRYGDQSDALAMIAAKNHANGVANPYAQMRKDLGFEFCRTVSEKNPLVAGPLR-RTDCSLVSDGAAALVLADAET 229 (389)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhhhcCChhhcCCcccHHhhhhhhhcCCcccCCCc-hhhcCCcCcceEEEEEecHHH
Confidence 00000000 0012110 1 1111 235556899999999999999
Q ss_pred HHhcCCceEEEEEEEEEcCCCCCCCCCCC-ChHHHHHHHHHHHHHcCCCCCCcCEEEEccCCCccCCHHHHHHHHHHh--
Q 012221 302 AMKRGAPIIAEYLGGAVNCDAYHMTDPRA-DGLGVSSCIESSLEDAGVSPEEVNYINAHATSTLAGDLAEINAIKKVF-- 378 (468)
Q Consensus 302 A~~~g~~i~a~i~g~~~~~d~~~~~~~~~-~~~~~~~~i~~al~~Agl~~~dId~v~~h~~gt~~~D~~E~~al~~~f-- 378 (468)
|++.+. +++|+|++...+..+....++ ...+...+++++|+++||+|+|||++|+|++++.. ...++++|.-.-
T Consensus 230 a~~~~~--~v~i~g~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~agl~~~did~~e~~d~f~~~-~~~~~e~lg~~~~G 306 (389)
T PRK07516 230 ARALQR--AVRFRARAHVNDFLPLSRRDPLAFEGPRRAWQRALAQAGVTLDDLSFVETHDCFTIA-ELIEYEAMGLAPPG 306 (389)
T ss_pred HHhcCC--CEEEEEEEeccCcccccCCCccccHHHHHHHHHHHHHcCCCHHHCCEEEEecCCCHH-HHHHHHHcCCCCCC
Confidence 988853 578999999887665433332 34667789999999999999999999999999974 344444433111
Q ss_pred ------cc-----CC--CceeeecccccCccccchhHHHHHHHHHHHhcCCcCCCCCCCCCCCCCCcccccccccccCcc
Q 012221 379 ------KN-----TT--GIKINATKSMIGHCLGAAGGLEAIATVKAITTGWLHPSINQFNPEPSVEFDTVANKKQQHEVN 445 (468)
Q Consensus 379 ------~~-----~~--~~~v~s~k~~~Gh~~~AsG~~~l~~~~~~l~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (468)
.+ .. +++.+++-..+||+.||+|+.+++++++||+.. ....|..+.+
T Consensus 307 ~~~~~~~~g~~~~~g~~pvN~sGG~la~Ghp~gasG~~~~~e~~~QL~g~--------------------ag~rQv~~a~ 366 (389)
T PRK07516 307 QGARAIREGWTAKDGKLPVNPSGGLKAKGHPIGATGVSMHVLAAMQLTGE--------------------AGGMQIPGAK 366 (389)
T ss_pred chHHHHHCCCccCCCCeeecCCCCcccCCCCccHHHHHHHHHHHHHhcCC--------------------ccCCcCCchh
Confidence 00 11 445555555679999999999999999999974 1233445668
Q ss_pred EEEEEccc-ccCeeeEEEEeec
Q 012221 446 VAISNSFG-FGGHNSVVAFSAF 466 (468)
Q Consensus 446 ~~l~~s~g-~gG~n~~~vl~~~ 466 (468)
++++++.| .+.+++.+||++.
T Consensus 367 ~~l~~~~gg~~~~~~~~vl~~~ 388 (389)
T PRK07516 367 LAGVFNMGGAAVANYVSILERV 388 (389)
T ss_pred eeeeeccCcccceEEEEEEEec
Confidence 89988877 5556677777764
|
|
| >cd00751 thiolase Thiolase are ubiquitous enzymes that catalyze the reversible thiolytic cleavage of 3-ketoacyl-CoA into acyl-CoA and acetyl-CoA, a 2-step reaction involving a covalent intermediate formed with a catalytic cysteine | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.3e-26 Score=230.09 Aligned_cols=270 Identities=20% Similarity=0.279 Sum_probs=197.3
Q ss_pred HHHHHHHHHHHHHHHcCCCCccccccccccceEEEeecCCCccchHHHHHHHHHhCCCCcCCcCcchhhhhhhHHHHhhh
Q 012221 126 CLRYCIVAGKKALEDADLGADISKKIDKERAGVLVGTGMGGLTVFSDGVQALIEKGHRKITPFFIPYAITNMGSALLAID 205 (468)
Q Consensus 126 ~~~l~l~a~~~AL~dAgl~~~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~ia~~ 205 (468)
...|+.+|+++||+|+|+ +++++| ++++|+...... . . ..+..++..
T Consensus 22 ~~~La~~A~~~AL~dAgl---~~~dID----~vi~~~~~~~~~---------------------~----~-~~a~~v~~~ 68 (386)
T cd00751 22 ADDLGAAVIKALLERAGL---DPEEVD----DVIMGNVLQAGE---------------------G----Q-NPARQAALL 68 (386)
T ss_pred HHHHHHHHHHHHHHhcCC---CHHHCC----EEEEEeccCCCC---------------------C----C-hHHHHHHHH
Confidence 478999999999999999 666777 677776432111 0 1 124467788
Q ss_pred hCCCC--cceeecccChHHHHHHHHHHHHHHhCCCCEEEEEeeccccc-hhhh-------------------hH------
Q 012221 206 LGFMG--PNYSISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAII-PIGL-------------------GG------ 257 (468)
Q Consensus 206 lgl~G--p~~~v~~acas~l~Al~~A~~~I~~G~~d~~lvgG~e~~~~-p~~~-------------------~~------ 257 (468)
+|++. |.++|+++|+|++.+|..|+++|++|.+|.+||+|+|.+.. +... .+
T Consensus 69 lGl~~~~~~~~v~~~c~s~~~al~~A~~~I~sG~~~~vLv~g~e~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (386)
T cd00751 69 AGLPESVPATTVNRVCGSGLQAVALAAQSIAAGEADVVVAGGVESMSRAPYLLPKARRGGRLGLNTLDGMLDDGLTDPFT 148 (386)
T ss_pred cCCCCCCchhhhccccHHHHHHHHHHHHHHHCCCCCeEEEeeeeccccCcccccccccccccCccccccccccccccccC
Confidence 99974 89999999999999999999999999999999999986311 1000 00
Q ss_pred -----hhhccccccC--------------------CCC-----------------------CCCCC------------CC
Q 012221 258 -----FVACRALSQR--------------------NDD-----------------------PQTAS------------RP 277 (468)
Q Consensus 258 -----~~~~~~l~~~--------------------~~~-----------------------~~~~~------------rp 277 (468)
+...+.+.+. +.+ |+... +|
T Consensus 149 ~~~~a~~a~~~~~~yg~tre~la~vav~~~~~a~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~a~~r~~~t~e~v~~s~~ 228 (386)
T cd00751 149 GLSMGITAENVAEKYGISREEQDEFALRSHQRAAAAQEAGRFKDEIVPVEVPGRKGPVVVDRDEGPRPDTTLEKLAKLKP 228 (386)
T ss_pred CCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHcCCCcCeEEEEEeccCCCCeEeCCCCCCCCCCCHHHHhCCCC
Confidence 0000000000 000 11111 11
Q ss_pred C-C-----CCCCCeeecceeEEEEecchhHHHhcCCceEEEEEEEEEcCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCC
Q 012221 278 W-D-----KDRDGFVMGEGAGVLVMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAGVSPE 351 (468)
Q Consensus 278 f-d-----~~~~G~v~gEGaaavvL~~~~~A~~~g~~i~a~i~g~~~~~d~~~~~~~~~~~~~~~~~i~~al~~Agl~~~ 351 (468)
. + ...|...++||++++||++++.|++++.+++++|+|++.+.+... ....+...+++++|+++||+|+
T Consensus 229 i~~p~g~l~~~d~~~~~dGaaavvl~s~~~a~~~~~~~~~~I~g~~~~~~~~~-----~~~~~~~~a~~~a~~~Agi~~~ 303 (386)
T cd00751 229 AFKKDGTVTAGNASGINDGAAAVLLMSEEKAKELGLKPLARIVGYAVAGVDPA-----IMGIGPVPAIPKALKRAGLTLD 303 (386)
T ss_pred CcCCCCcEeCCcCCCCCcceEEEEEecHHHHHHCCCCeeEEEEEEEEccCCCc-----ccchhHHHHHHHHHHHcCCCHH
Confidence 1 1 113445689999999999999999999999999999999876432 2344567899999999999999
Q ss_pred CcCEEEEccCCCccCCHHHHHHHHHHhcc-CCCceeeecccccCccccchhHHHHHHHHHHHhcCCcCCCCCCCCCCCCC
Q 012221 352 EVNYINAHATSTLAGDLAEINAIKKVFKN-TTGIKINATKSMIGHCLGAAGGLEAIATVKAITTGWLHPSINQFNPEPSV 430 (468)
Q Consensus 352 dId~v~~h~~gt~~~D~~E~~al~~~f~~-~~~~~v~s~k~~~Gh~~~AsG~~~l~~~~~~l~~~~~pp~~~~~~~~~~~ 430 (468)
|||++|+|++++. .|+..+ +.|+- ..++++++++..+||+.+|+|+.+++++++||+..
T Consensus 304 did~~e~~d~f~~----~~~~~~-e~lg~~~~pvn~~GG~l~~Gh~~gasG~~~~~e~~~qL~g~--------------- 363 (386)
T cd00751 304 DIDLIEINEAFAA----QALACL-KELGLDPEKVNVNGGAIALGHPLGASGARIVVTLLHELKRR--------------- 363 (386)
T ss_pred HcCEEEeechhHH----HHHHHH-HHhCCChhhcCCCcchHhhCccHHHHHHHHHHHHHHHHHhc---------------
Confidence 9999999987763 233333 33443 23688999999999999999999999999999863
Q ss_pred CcccccccccccCccEEEEEcccccCeeeEEEEee
Q 012221 431 EFDTVANKKQQHEVNVAISNSFGFGGHNSVVAFSA 465 (468)
Q Consensus 431 ~~~~~~~~~~~~~~~~~l~~s~g~gG~n~~~vl~~ 465 (468)
..++++++.-+-||..+++||++
T Consensus 364 ------------~~~~gl~~~~~~gg~g~~~~ie~ 386 (386)
T cd00751 364 ------------GGRYGLATMCIGGGQGAAMVIER 386 (386)
T ss_pred ------------CCCEEEEEEcccccceEEEEEEC
Confidence 34689999999999999999984
|
They are found in prokaryotes and eukaryotes (cytosol, microbodies and mitochondria). There are 2 functional different classes: thiolase-I (3-ketoacyl-CoA thiolase) and thiolase-II (acetoacetyl-CoA thiolase). Thiolase-I can cleave longer fatty acid molecules and plays an important role in the beta-oxidative degradation of fatty acids. Thiolase-II has a high substrate specificity. Although it can cleave acetoacyl-CoA, its main function is the synthesis of acetoacyl-CoA from two molecules of acetyl-CoA, which gives it importance in several biosynthetic pathways. |
| >PRK09052 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.5e-25 Score=224.57 Aligned_cols=269 Identities=20% Similarity=0.271 Sum_probs=188.2
Q ss_pred HHHHHHHHHHHHHHHc-CCCCccccccccccceEEEeecCCCccchHHHHHHHHHhCCCCcCCcCcchhhhhhhHHHHhh
Q 012221 126 CLRYCIVAGKKALEDA-DLGADISKKIDKERAGVLVGTGMGGLTVFSDGVQALIEKGHRKITPFFIPYAITNMGSALLAI 204 (468)
Q Consensus 126 ~~~l~l~a~~~AL~dA-gl~~~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~ia~ 204 (468)
...|+.+|+++||+++ |+ +++++| .|++|+...... . ....+..+..
T Consensus 31 ~~eLa~~A~~~AL~~a~gl---~~~dID----~vi~g~~~~~~~----------------------~---~~~~ar~~~~ 78 (399)
T PRK09052 31 PDDLLAHVLRSAVAQVPGL---DPKLIE----DAIVGCAMPEAE----------------------Q---GLNVARIGAL 78 (399)
T ss_pred HHHHHHHHHHHHHHhccCc---CHHHCC----EEEEEecCCCCC----------------------C---CchHHHHHHH
Confidence 4678999999999997 99 667777 688887532110 0 0111223445
Q ss_pred hhCCC--CcceeecccChHHHHHHHHHHHHHHhCCCCEEEEEeeccccchh------hhh--Hhhh---------cc---
Q 012221 205 DLGFM--GPNYSISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAIIPI------GLG--GFVA---------CR--- 262 (468)
Q Consensus 205 ~lgl~--Gp~~~v~~acas~l~Al~~A~~~I~~G~~d~~lvgG~e~~~~p~------~~~--~~~~---------~~--- 262 (468)
.+|+. -|.++|+++|+||+.|++.|+++|++|++|++||+|+|.+.... ... .+.. +.
T Consensus 79 ~~Gl~~~~p~~~V~~aCaSg~~Al~~A~~~I~sG~~d~vLv~G~E~mS~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 158 (399)
T PRK09052 79 LAGLPNSVGGVTVNRFCASGLQAVAMAADRIRVGEADVMIAAGVESMSMVPMMGNKPSMSPAIFARDENVGIAYGMGLTA 158 (399)
T ss_pred HcCCCCCCceeeecchhhHHHHHHHHHHHHHHCCCCCEEEEEEEeccccCcccCcccccCcchhccCCcccccchHHHHH
Confidence 56885 37999999999999999999999999999999999999743211 000 0000 00
Q ss_pred --ccccCC------------------CCCCC-C------------C----------------------------------
Q 012221 263 --ALSQRN------------------DDPQT-A------------S---------------------------------- 275 (468)
Q Consensus 263 --~l~~~~------------------~~~~~-~------------~---------------------------------- 275 (468)
.+.+.+ .+|.. . .
T Consensus 159 ~~~~~~ygitre~~d~~a~~sh~~a~~n~~ag~~~~ei~~~~v~~~~~~~~~~~~~~~~~~~~~D~~~r~~~~~e~l~~l 238 (399)
T PRK09052 159 EKVAEQWKVSREDQDAFALESHQKAIAAQQAGEFKDEITPYEITERFPDLATGEVDVKTRTVDLDEGPRADTSLEGLAKL 238 (399)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHcCCCCceEeeEeccccccccccCcccccceEeccCCCCCCCCCHHHHhcC
Confidence 000000 00110 0 0
Q ss_pred CC-CCC-----CCCCeeecceeEEEEecchhHHHhcCCceEEEEEEEEEcCCCCCCCCCCCChHHHHHHHHHHHHHcCCC
Q 012221 276 RP-WDK-----DRDGFVMGEGAGVLVMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAGVS 349 (468)
Q Consensus 276 rp-fd~-----~~~G~v~gEGaaavvL~~~~~A~~~g~~i~a~i~g~~~~~d~~~~~~~~~~~~~~~~~i~~al~~Agl~ 349 (468)
+| |+. ..|...++|||+++||++++.|+++|.+++++|+|++.... .|...+.+...+++++|++|||+
T Consensus 239 ~p~f~~~g~lt~~n~s~~~DGAaa~vl~se~~a~~~g~~~~a~i~g~~~~~~-----~~~~~~~~~~~A~~~al~~Agi~ 313 (399)
T PRK09052 239 KPVFANKGSVTAGNSSQTSDGAGAVILVSEKALKQFNLTPLARFVSFAVAGV-----PPEIMGIGPIEAIPAALKQAGLK 313 (399)
T ss_pred CCccCCCCcEECCccCCCCCceEEEEEecHHHHHHCCCCeeEEEEEEEEecc-----CCCccchhHHHHHHHHHHHcCCC
Confidence 00 110 01224589999999999999999999999999999999863 34445557789999999999999
Q ss_pred CCCcCEEEEccCCCccCCHHHHH--HHHHHhccCCCceeeeccc--ccCccccchhHHHHHHHHHHHhcCCcCCCCCCCC
Q 012221 350 PEEVNYINAHATSTLAGDLAEIN--AIKKVFKNTTGIKINATKS--MIGHCLGAAGGLEAIATVKAITTGWLHPSINQFN 425 (468)
Q Consensus 350 ~~dId~v~~h~~gt~~~D~~E~~--al~~~f~~~~~~~v~s~k~--~~Gh~~~AsG~~~l~~~~~~l~~~~~pp~~~~~~ 425 (468)
|+|||++|.| |.++.+ +..+.|+-. ..+++..++ .+||+.||+|+++++.++++|+++
T Consensus 314 ~~did~~ei~-------D~f~~~~l~~~e~lg~~-~~~vN~~GG~la~GHp~gasG~~~~~~~~~~L~~~---------- 375 (399)
T PRK09052 314 QDDLDWIELN-------EAFAAQSLAVIRDLGLD-PSKVNPLGGAIALGHPLGATGAIRTATVVHGLRRT---------- 375 (399)
T ss_pred HHHcCEEEeC-------cHHHHHHHHHHHHhCCC-CcccCCCCchhhcCchHHHHHHHHHHHHHHHHHhc----------
Confidence 9999999977 554443 344556542 234555555 789999999999999999999873
Q ss_pred CCCCCCcccccccccccCccEEEEEcccccCeeeEEEEeec
Q 012221 426 PEPSVEFDTVANKKQQHEVNVAISNSFGFGGHNSVVAFSAF 466 (468)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~l~~s~g~gG~n~~~vl~~~ 466 (468)
+.+++++...+-||...++||++.
T Consensus 376 -----------------~~~~g~~~~c~~gg~g~a~~~e~~ 399 (399)
T PRK09052 376 -----------------NLKYGMVTMCVGTGMGAAGIFERL 399 (399)
T ss_pred -----------------CCCeEEEEEcccCCceeEEEEEeC
Confidence 134688888888999999999863
|
|
| >PRK08242 acetyl-CoA acetyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.2e-25 Score=222.62 Aligned_cols=271 Identities=19% Similarity=0.216 Sum_probs=192.6
Q ss_pred HHHHHHHHHHHHHHHcCCCCccccccccccceEEEeecCCCccchHHHHHHHHHhCCCCcCCcCcchhhhhhhHHHHhhh
Q 012221 126 CLRYCIVAGKKALEDADLGADISKKIDKERAGVLVGTGMGGLTVFSDGVQALIEKGHRKITPFFIPYAITNMGSALLAID 205 (468)
Q Consensus 126 ~~~l~l~a~~~AL~dAgl~~~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~ia~~ 205 (468)
...|+.+|++++|+++|+ +++++| -|++|+...... .....+...+..
T Consensus 28 ~~dLa~~A~~~al~~agi---~p~~ID----~vi~G~~~~~~~-------------------------~~~~~~r~a~~~ 75 (402)
T PRK08242 28 PVRLAAGLLEALRDRNGL---DTAAVD----DVVLGCVTPVGD-------------------------QGADIARTAVLA 75 (402)
T ss_pred HHHHHHHHHHHHHHHcCC---CHHHcC----EEEEEecCCCcc-------------------------ccccHHHHHHHH
Confidence 456889999999999999 666777 588887542110 001123344456
Q ss_pred hCCC--CcceeecccChHHHHHHHHHHHHHHhCCCCEEEEEeeccccc-hhh----------hhH----hh---------
Q 012221 206 LGFM--GPNYSISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAII-PIG----------LGG----FV--------- 259 (468)
Q Consensus 206 lgl~--Gp~~~v~~acas~l~Al~~A~~~I~~G~~d~~lvgG~e~~~~-p~~----------~~~----~~--------- 259 (468)
.|+. -|.++|+.+|+|++.||..|+++|++|.+|++|++|+|.+.. |+. +.. +.
T Consensus 76 ~Gl~~~~pa~~Vn~aCaSg~~Ai~~A~~~I~sG~~d~vLv~G~E~mS~~p~~~~~~~~~~~~~~~~~~~~~~mg~~Ae~~ 155 (402)
T PRK08242 76 AGLPETVPGVQINRFCASGLEAVNLAAAKVRSGWDDLVIAGGVESMSRVPMGSDGGAWAMDPSTNFPTYFVPQGISADLI 155 (402)
T ss_pred cCCCCCCCeEEEcchhhhHHHHHHHHHHHHHcCCCCEEEEEEEEccCCCcccccCcccccCcccccccccCCHHHHHHHH
Confidence 6773 489999999999999999999999999999999999997532 210 000 00
Q ss_pred ------------------hccccc----------------cCC---CCCCCCC------------CC-CCCCC-------
Q 012221 260 ------------------ACRALS----------------QRN---DDPQTAS------------RP-WDKDR------- 282 (468)
Q Consensus 260 ------------------~~~~l~----------------~~~---~~~~~~~------------rp-fd~~~------- 282 (468)
..+... +.. .+++... +| |+...
T Consensus 156 a~~~gisRe~~d~~A~~Sh~~A~~A~~~g~f~~ei~pv~~~~~~~~~~~de~~r~~~t~e~l~~l~p~f~~~~~~~g~~~ 235 (402)
T PRK08242 156 ATKYGFSREDVDAYAVESQQRAAAAWAEGYFAKSVVPVKDQNGLTILDHDEHMRPGTTMESLAKLKPSFAMMGEMGGFDA 235 (402)
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHHHHcCCCcceeeeeecCCCCEeeCCCCCCCCCCCHHHHhCCCCCccCccccCcccc
Confidence 000000 000 0122222 23 43210
Q ss_pred -------------------CCeeecceeEEEEecchhHHHhcCCceEEEEEEEEEcCCCCCCCCCCCChHHHHHHHHHHH
Q 012221 283 -------------------DGFVMGEGAGVLVMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSL 343 (468)
Q Consensus 283 -------------------~G~v~gEGaaavvL~~~~~A~~~g~~i~a~i~g~~~~~d~~~~~~~~~~~~~~~~~i~~al 343 (468)
+...++|||+++||++++.|+++|.+++++|.|++...+. |.....+...+++++|
T Consensus 236 ~~~~~~~~~~~~~~~vTagn~s~~~DGAaAlvl~s~e~A~~~g~~p~a~I~g~~~~~~~-----~~~~~~~~~~a~~~al 310 (402)
T PRK08242 236 VALQKYPEVERINHVHHAGNSSGIVDGAAAVLIGSEEAGKALGLKPRARIVATATIGSD-----PTIMLTGPVPATRKAL 310 (402)
T ss_pred cccccccccccccCceecCcCCCCCCceEEEEEecHHHHHHcCCCCcEEEEEEEEecCC-----chhhcccHHHHHHHHH
Confidence 3335899999999999999999999999999999887643 2222334467999999
Q ss_pred HHcCCCCCCcCEEEEccCCCccCCHHHHHHHHHHhcc-CCCceeeecccccCccccchhHHHHHHHHHHHhcCCcCCCCC
Q 012221 344 EDAGVSPEEVNYINAHATSTLAGDLAEINAIKKVFKN-TTGIKINATKSMIGHCLGAAGGLEAIATVKAITTGWLHPSIN 422 (468)
Q Consensus 344 ~~Agl~~~dId~v~~h~~gt~~~D~~E~~al~~~f~~-~~~~~v~s~k~~~Gh~~~AsG~~~l~~~~~~l~~~~~pp~~~ 422 (468)
+++||+++|||++|.|..++. .++. ..+.|+- ..++++++++..+||++||+|++.++.++++|+++
T Consensus 311 ~~AGl~~~DID~~ei~daFa~----~~l~-~~e~lG~~~~~vN~~GG~la~GHP~GAsG~~~~~~l~~~L~~~------- 378 (402)
T PRK08242 311 AKAGLTVDDIDLFELNEAFAS----VVLR-FMQALDIPHDKVNVNGGAIAMGHPLGATGAMILGTVLDELERR------- 378 (402)
T ss_pred HHcCCCHHHCCEEEecchhhH----HHHH-HHHHhCCCCcCCCcCCCHHhcCCcHHHHHHHHHHHHHHHHHhc-------
Confidence 999999999999999855543 2222 2334442 35799999999999999999999999999999763
Q ss_pred CCCCCCCCCcccccccccccCccEEEEEcccccCeeeEEEEee
Q 012221 423 QFNPEPSVEFDTVANKKQQHEVNVAISNSFGFGGHNSVVAFSA 465 (468)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~g~gG~n~~~vl~~ 465 (468)
..++++++...-||+..++||++
T Consensus 379 --------------------~~~~g~~~~c~ggG~g~a~~~e~ 401 (402)
T PRK08242 379 --------------------GKRTALITLCVGGGMGIATIIER 401 (402)
T ss_pred --------------------CCCeEEEEEcccCCceeEEEEEe
Confidence 13567877777888999999986
|
|
| >PRK06954 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.7e-25 Score=223.30 Aligned_cols=272 Identities=19% Similarity=0.235 Sum_probs=189.9
Q ss_pred HHHHHHHHHHHHHHHcCCCCccccccccccceEEEeecCCCccchHHHHHHHHHhCCCCcCCcCcchhhhhhhHHHHhhh
Q 012221 126 CLRYCIVAGKKALEDADLGADISKKIDKERAGVLVGTGMGGLTVFSDGVQALIEKGHRKITPFFIPYAITNMGSALLAID 205 (468)
Q Consensus 126 ~~~l~l~a~~~AL~dAgl~~~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~ia~~ 205 (468)
...|+.+++++||+|+|+ +++++| .|++|+....... .+ ++...+..
T Consensus 31 ~~eL~~~a~~~aL~~Agi---~~~dID----~vi~G~~~~~~~~-------------------------~~-~~~~~~l~ 77 (397)
T PRK06954 31 APQLGAAAIAAAVERAGL---KPEQID----EVVMGCVLPAGQG-------------------------QA-PARQAALG 77 (397)
T ss_pred HHHHHHHHHHHHHHHcCC---CHHHcC----EEEEEecCCCccc-------------------------hH-HHHHHHHc
Confidence 367899999999999999 667777 6888875321110 01 12223333
Q ss_pred hCC--CCcceeecccChHHHHHHHHHHHHHHhCCCCEEEEEeeccccc-hhh---------------hhHh--hhc-ccc
Q 012221 206 LGF--MGPNYSISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAII-PIG---------------LGGF--VAC-RAL 264 (468)
Q Consensus 206 lgl--~Gp~~~v~~acas~l~Al~~A~~~I~~G~~d~~lvgG~e~~~~-p~~---------------~~~~--~~~-~~l 264 (468)
+|+ +-|.++|+.+|+||+.|+..|+++|++|++|++||+|+|.+.. |.. +..+ ... ..+
T Consensus 78 ag~~~~~p~~~V~~aCaSG~~Av~~A~~~I~sG~~d~vLv~G~E~ms~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 157 (397)
T PRK06954 78 AGLPLSVGCTTVNKMCGSGMRAAMFAHDMLVAGSVDVIVAGGMESMTNAPYLLPKARGGMRMGHGQVLDHMFLDGLEDAY 157 (397)
T ss_pred CCCCCCccEeeccccchHHHHHHHHHHHHHHCCCCCEEEEEeeeccCCCcccCcccccccccCcchhhhhhccccccccc
Confidence 455 3478999999999999999999999999999999999997541 210 0000 000 000
Q ss_pred c--------------cCC-------------------CCCCCCCC----CCC----------------------------
Q 012221 265 S--------------QRN-------------------DDPQTASR----PWD---------------------------- 279 (468)
Q Consensus 265 ~--------------~~~-------------------~~~~~~~r----pfd---------------------------- 279 (468)
. +.+ ..+.+..+ |++
T Consensus 158 ~~~~~~~~~a~~~~~~ygitre~~d~~A~~s~~~a~~a~~~~~~~~~~~pv~v~~~~~~~~v~~D~~pr~~~~~~l~~l~ 237 (397)
T PRK06954 158 DKGRLMGTFAEECAGEYGFTREAQDAFAIESLARAKRANEDGSFAWEIAPVTVAGKKGDTVIDRDEQPFKANPEKIPTLK 237 (397)
T ss_pred ccCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHcCCCCceEeeEEeccCCCCeEeccCCCcCCCCHHHHhCCC
Confidence 0 000 00111110 111
Q ss_pred ----C-----CCCCeeecceeEEEEecchhHHHhcCCceEEEEEEEEEcCCCCCCCCCCCChHHHHHHHHHHHHHcCCCC
Q 012221 280 ----K-----DRDGFVMGEGAGVLVMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAGVSP 350 (468)
Q Consensus 280 ----~-----~~~G~v~gEGaaavvL~~~~~A~~~g~~i~a~i~g~~~~~d~~~~~~~~~~~~~~~~~i~~al~~Agl~~ 350 (468)
. ..+...++|||+++||++++.|++++.+++++|.|++..... +.....+...+++++|+++||+|
T Consensus 238 ~~f~~~g~lt~~~~~~~~DGAaa~vl~s~~~a~~~~~~p~~~i~g~~~~~~~-----~~~~~~~~~~a~~~al~~agl~~ 312 (397)
T PRK06954 238 PAFSKTGTVTAANSSSISDGAAALVMMRASTAKRLGLAPLARVVGHSTFAQA-----PSKFTTAPVGAIRKLFEKNGWRA 312 (397)
T ss_pred CccCCCCcEEccccCCCCCceEEEEEecHHHHHHCCCCceEEEEEEEecccC-----cccccchHHHHHHHHHHHcCCCH
Confidence 0 012234799999999999999999999999999998775422 22222355789999999999999
Q ss_pred CCcCEEEEccCCCccCCHHHHHHHHHHhccCCCceeeecccccCccccchhHHHHHHHHHHHhcCCcCCCCCCCCCCCCC
Q 012221 351 EEVNYINAHATSTLAGDLAEINAIKKVFKNTTGIKINATKSMIGHCLGAAGGLEAIATVKAITTGWLHPSINQFNPEPSV 430 (468)
Q Consensus 351 ~dId~v~~h~~gt~~~D~~E~~al~~~f~~~~~~~v~s~k~~~Gh~~~AsG~~~l~~~~~~l~~~~~pp~~~~~~~~~~~ 430 (468)
+|||++|.|..++. .|+..++.+--...++++++++..+||++||+|+++++.+++||+..
T Consensus 313 ~Did~~ei~d~fa~----~~l~~~e~lg~~~~~vN~~GG~~a~Ghp~gasG~~~~~~~~~qL~~~--------------- 373 (397)
T PRK06954 313 AEVDLFEINEAFAV----VTMAAMKEHGLPHEKVNVNGGACALGHPIGASGARILVTLIGALRAR--------------- 373 (397)
T ss_pred HHCCEEehhhHHHH----HHHHHHHHhCCCcccCCcCCChHHhcccHHHHHHHHHHHHHHHHHhc---------------
Confidence 99999999988775 45555555421235789999999999999999999999999999863
Q ss_pred CcccccccccccCccEEEEEcccccCeeeEEEEeec
Q 012221 431 EFDTVANKKQQHEVNVAISNSFGFGGHNSVVAFSAF 466 (468)
Q Consensus 431 ~~~~~~~~~~~~~~~~~l~~s~g~gG~n~~~vl~~~ 466 (468)
.-++.+++..+-||...++||+++
T Consensus 374 ------------~g~~~v~~~c~~gg~g~a~~~e~~ 397 (397)
T PRK06954 374 ------------GGKRGVASLCIGGGEATAMGIELI 397 (397)
T ss_pred ------------CCCeEEEEEccccchhhEEEEEeC
Confidence 123456677778889899999864
|
|
| >PRK13359 beta-ketoadipyl CoA thiolase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.6e-25 Score=219.62 Aligned_cols=269 Identities=21% Similarity=0.246 Sum_probs=192.8
Q ss_pred HHHHHHHHHHHHHHH-cCCCCccccccccccceEEEeecCCCccchHHHHHHHHHhCCCCcCCcCcchhhhhhhHHHHhh
Q 012221 126 CLRYCIVAGKKALED-ADLGADISKKIDKERAGVLVGTGMGGLTVFSDGVQALIEKGHRKITPFFIPYAITNMGSALLAI 204 (468)
Q Consensus 126 ~~~l~l~a~~~AL~d-Agl~~~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~ia~ 204 (468)
...|+..+++++|++ +|+ +++++| .|++|+...... ....++..++.
T Consensus 26 ~~~L~~~a~~~al~r~a~i---~~~~Id----~vi~G~~~~~~~-------------------------~g~~~ar~~~l 73 (400)
T PRK13359 26 ADDLGAVPLKALVERNPDV---DWAAID----DVIYGCANQAGE-------------------------DNRNVARMSLL 73 (400)
T ss_pred HHHHHHHHHHHHHHhccCC---CHHHCC----EEEEEecccccc-------------------------ccccHHHHHHH
Confidence 356788899999995 699 666777 688887532100 00123566777
Q ss_pred hhCCCC--cceeecccChHHHHHHHHHHHHHHhCCCCEEEEEeeccccc-hhhhh----Hh-------hh--------c-
Q 012221 205 DLGFMG--PNYSISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAII-PIGLG----GF-------VA--------C- 261 (468)
Q Consensus 205 ~lgl~G--p~~~v~~acas~l~Al~~A~~~I~~G~~d~~lvgG~e~~~~-p~~~~----~~-------~~--------~- 261 (468)
..||.. |.++|+.+|+||+.|+..|++.|++|++|++|+||+|++.. |+.+. .+ .. .
T Consensus 74 ~~Gl~~~vp~~tV~~~CaSG~~Av~~A~~~I~sG~~divlagGvEsmS~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (400)
T PRK13359 74 LAGLPHGVPGSTINRLCGSGMDAVGVAARAIKSGEAALMIAGGVESMSRAPFVMGKAESAFSRQAEIFDTTIGWRFVNPL 153 (400)
T ss_pred HcCCCCCCceEEEeccchhHHHHHHHHHHHHHcCCCCEEEEeeeeccCCCccccccccccccCCcccccccccccccCCc
Confidence 888864 99999999999999999999999999999999999998543 32000 00 00 0
Q ss_pred --ccccc-------------CCC-------------------CCCC-------------------------C--------
Q 012221 262 --RALSQ-------------RND-------------------DPQT-------------------------A-------- 274 (468)
Q Consensus 262 --~~l~~-------------~~~-------------------~~~~-------------------------~-------- 274 (468)
..... .+. .+.+ .
T Consensus 154 ~~~~~~~~~mg~~ae~~a~~~gisre~~d~~a~~Sh~~a~~a~~~g~~~~ei~pv~~~~~~~~~~~~~~De~~r~~t~e~ 233 (400)
T PRK13359 154 MKQLYGVDSMPETAENVATDYNVSRADQDAFALRSQQKAARAQADGTLAQEIVPVTIPQKKGDPLVVSRDEHPRETTLEA 233 (400)
T ss_pred cccccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhcCCCccceeeeeeccCCCCceeecCCCCCCCCCHHH
Confidence 00000 000 0000 0
Q ss_pred ---CCC-CCCC-----CCCeeecceeEEEEecchhHHHhcCCceEEEEEEEEEcCCCCCCCCCCCChHHHHHHHHHHHHH
Q 012221 275 ---SRP-WDKD-----RDGFVMGEGAGVLVMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLED 345 (468)
Q Consensus 275 ---~rp-fd~~-----~~G~v~gEGaaavvL~~~~~A~~~g~~i~a~i~g~~~~~d~~~~~~~~~~~~~~~~~i~~al~~ 345 (468)
.+| |+.+ .+...++|||+++||++++.|+++|.+++++|+|++... ..|.+.+.+...+++++|++
T Consensus 234 l~~l~p~f~~~g~lT~~n~~~~~DGAaa~vL~s~e~A~~~g~~~~a~I~g~~~~~-----~~p~~~~~~~~~A~~~al~~ 308 (400)
T PRK13359 234 LAKLKGVVRPDGTVTAGNASGVNDGACALLLASEAAARRHGLKPRARVLGIATAG-----VEPRVMGIGPAPATQKLLAR 308 (400)
T ss_pred HhcCCCccCCCCceecccccCccCceEEEEEecHHHHHHCCCCccEEEEEEEEec-----CCCCccchhHHHHHHHHHHH
Confidence 011 2211 122237999999999999999999999999999998874 33555666778999999999
Q ss_pred cCCCCCCcCEEEEccCCCccCCHHHHHHH--HHHhcc-CCCceeeecccc--cCccccchhHHHHHHHHHHHhcCCcCCC
Q 012221 346 AGVSPEEVNYINAHATSTLAGDLAEINAI--KKVFKN-TTGIKINATKSM--IGHCLGAAGGLEAIATVKAITTGWLHPS 420 (468)
Q Consensus 346 Agl~~~dId~v~~h~~gt~~~D~~E~~al--~~~f~~-~~~~~v~s~k~~--~Gh~~~AsG~~~l~~~~~~l~~~~~pp~ 420 (468)
+|++|+||||||.| |.++...+ .+.|+- ....+++..|+. +||+.||+|+.+++.+++||+..
T Consensus 309 AGl~~~DID~iei~-------dafa~~~l~~~e~lg~~~~~~pvN~~GG~la~GHp~gasG~~~v~e~~~qL~~~----- 376 (400)
T PRK13359 309 LGMTLDQFDVIELN-------EAFASQGLAVLRELGLADDDARVNPNGGAIALGHPLGASGARLVTTALYQLERT----- 376 (400)
T ss_pred hCCCHHHcCcCccC-------cHhHHHHHHHHHHcCCCCCCCCEECCCchhhcCCchhHHHHHHHHHHHHHHhhc-----
Confidence 99999999999976 66654443 344553 124678888875 79999999999999999999752
Q ss_pred CCCCCCCCCCCcccccccccccCccEEEEEcccccCeeeEEEEee
Q 012221 421 INQFNPEPSVEFDTVANKKQQHEVNVAISNSFGFGGHNSVVAFSA 465 (468)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~g~gG~n~~~vl~~ 465 (468)
..++++++..+-||...++||++
T Consensus 377 ----------------------~~~~g~~~~c~~gG~g~a~~ie~ 399 (400)
T PRK13359 377 ----------------------GGRFALCTMCIGVGQGIAIAIER 399 (400)
T ss_pred ----------------------CCCeEEEEEcccCCceeEEEEEe
Confidence 23567877778889999999986
|
|
| >PRK06205 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.8e-25 Score=222.85 Aligned_cols=272 Identities=18% Similarity=0.255 Sum_probs=195.5
Q ss_pred HHHHHHHHHHHHHHHcCCCCccccccccccceEEEeecCCCccchHHHHHHHHHhCCCCcCCcCcchhhhhhhHHHHhhh
Q 012221 126 CLRYCIVAGKKALEDADLGADISKKIDKERAGVLVGTGMGGLTVFSDGVQALIEKGHRKITPFFIPYAITNMGSALLAID 205 (468)
Q Consensus 126 ~~~l~l~a~~~AL~dAgl~~~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~ia~~ 205 (468)
...|+.+|+++||+|+|+ +++++| .|++|+....... ..++..++..
T Consensus 26 ~~eLa~~A~~~AL~~agl---~~~dID----~vv~g~~~~~~~~--------------------------~~~a~~va~~ 72 (404)
T PRK06205 26 AEELAATVIRALVERTGI---DPARID----DVIFGQGYPNGEA--------------------------PAIGRVAALD 72 (404)
T ss_pred HHHHHHHHHHHHHHHcCC---CHHHCC----EEEEEeccCCCCC--------------------------ChHHHHHHHH
Confidence 367899999999999999 666777 6888875322110 1123457777
Q ss_pred hCCC--CcceeecccChHHHHHHHHHHHHHHhCCCCEEEEEeeccccchh----------------hhhH----------
Q 012221 206 LGFM--GPNYSISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAIIPI----------------GLGG---------- 257 (468)
Q Consensus 206 lgl~--Gp~~~v~~acas~l~Al~~A~~~I~~G~~d~~lvgG~e~~~~p~----------------~~~~---------- 257 (468)
+|+. -|.++|+.+|+|++.||+.|+++|++|.+|++||+|+|.+.... .+..
T Consensus 73 ~Gl~~~~p~~~V~~~CaSg~~Al~~A~~~I~sG~~d~vLv~G~E~ms~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (404)
T PRK06205 73 AGLPVTVPGMQLDRRCGSGLQAVITAAMQVQTGAADVVIAGGAESMSNVEFYTTDMRWGVRGGGVQLHDRLARGRETAGG 152 (404)
T ss_pred cCCCCCCceeehhhhhhHHHHHHHHHHHHHHcCCCCEEEEeeehhhccCcccccccccccccCcchhhhhhccCcccccc
Confidence 8886 38999999999999999999999999999999999999743100 0000
Q ss_pred --hh---hcc-----ccccC-----------------------------------------C---CCCCCCC--------
Q 012221 258 --FV---ACR-----ALSQR-----------------------------------------N---DDPQTAS-------- 275 (468)
Q Consensus 258 --~~---~~~-----~l~~~-----------------------------------------~---~~~~~~~-------- 275 (468)
+. .++ .+.+. + .+|+...
T Consensus 153 ~~~~~~~~m~~~a~~~~~~~gitre~~~~~Av~sh~~A~~a~~~g~~~~ei~pv~~~~~~~~~~~~~~da~~r~~~t~e~ 232 (404)
T PRK06205 153 RRFPVPGGMIETAENLRREYGISREEQDALAVRSHQRAVAAQEAGRFDDEIVPVTVPQRKGDPTVVDRDEHPRADTTLES 232 (404)
T ss_pred cccCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHcCCCcceeeeeEecCCCCCceEeccCCCCCCCCCHHH
Confidence 00 000 00000 0 0122111
Q ss_pred ----CCCC---------CCCCCeeecceeEEEEecchhHHHhcCCceEEEEEEEEEcCCCCCCCCCCCChHHHHHHHHHH
Q 012221 276 ----RPWD---------KDRDGFVMGEGAGVLVMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESS 342 (468)
Q Consensus 276 ----rpfd---------~~~~G~v~gEGaaavvL~~~~~A~~~g~~i~a~i~g~~~~~d~~~~~~~~~~~~~~~~~i~~a 342 (468)
+|.. ...+...++|||+++||++++.|++.+.+++++|.|++...+.. ...+.+...+++++
T Consensus 233 ~~~~~~v~~~~~p~g~lt~~~~~~~~DGAaa~vl~se~~A~~~~~~p~~~i~g~~~~~~~~-----~~~~~~~~~a~~~a 307 (404)
T PRK06205 233 LAKLRPIMGKQDPEATVTAGNASGQNDAAAACLVTTEDKAEELGLRPLARLVSWAVAGVEP-----SRMGIGPVPATEKA 307 (404)
T ss_pred HhcCCCcCccCCCCCceeCcccCCCCCceeEEEEecHHHHHHCCCCceEEEEEEEEeccCC-----ccccccHHHHHHHH
Confidence 1221 11233447899999999999999999999999999999876432 22233567899999
Q ss_pred HHHcCCCCCCcCEEEEccCCCccCCHHHHHHHHHHhc--c--CCCceeeecccccCccccchhHHHHHHHHHHHhcCCcC
Q 012221 343 LEDAGVSPEEVNYINAHATSTLAGDLAEINAIKKVFK--N--TTGIKINATKSMIGHCLGAAGGLEAIATVKAITTGWLH 418 (468)
Q Consensus 343 l~~Agl~~~dId~v~~h~~gt~~~D~~E~~al~~~f~--~--~~~~~v~s~k~~~Gh~~~AsG~~~l~~~~~~l~~~~~p 418 (468)
|++|||+|+|||++|.|..++. .|+..++. |+ . ..++++++++..+||+.||+|+..++++++||+..
T Consensus 308 l~~Agl~~~Did~~ei~d~f~~----~~l~~~e~-lg~~~~~~~~vN~~GG~la~Ghp~gatG~~~v~e~~~qL~~~--- 379 (404)
T PRK06205 308 LARAGLTLDDIDLIELNEAFAA----QVLAVLKE-WGFGADDEERLNVNGSGISLGHPVGATGGRILATLLRELQRR--- 379 (404)
T ss_pred HHHcCCCHHHCCEeeeccHHHH----HHHHHHHH-hCcCcccCCCcCCCCCHHhhCCChhhhHHHHHHHHHHHHHhc---
Confidence 9999999999999999866553 23333322 22 1 13689999999999999999999999999999863
Q ss_pred CCCCCCCCCCCCCcccccccccccCccEEEEEcccccCeeeEEEEeecC
Q 012221 419 PSINQFNPEPSVEFDTVANKKQQHEVNVAISNSFGFGGHNSVVAFSAFK 467 (468)
Q Consensus 419 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~g~gG~n~~~vl~~~~ 467 (468)
..++++++...-||...++||++.+
T Consensus 380 ------------------------~~~~gl~~~c~~gg~g~a~~~e~~~ 404 (404)
T PRK06205 380 ------------------------QARYGLETMCIGGGQGLAAVFERVN 404 (404)
T ss_pred ------------------------CCCeEEEEEeccCChhhEEEEEecC
Confidence 2367888888899999999999864
|
|
| >TIGR01930 AcCoA-C-Actrans acetyl-CoA acetyltransferases | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.8e-25 Score=224.18 Aligned_cols=269 Identities=23% Similarity=0.279 Sum_probs=193.7
Q ss_pred HHHHHHHHHHHHHHHcCCCCccccccccccceEEEeecCCCccchHHHHHHHHHhCCCCcCCcCcchhhhhhhHHHHhhh
Q 012221 126 CLRYCIVAGKKALEDADLGADISKKIDKERAGVLVGTGMGGLTVFSDGVQALIEKGHRKITPFFIPYAITNMGSALLAID 205 (468)
Q Consensus 126 ~~~l~l~a~~~AL~dAgl~~~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~ia~~ 205 (468)
...|+.+|+++||+|+|+ +++++| ++++|+...... . . ..+..++..
T Consensus 21 ~~~La~~A~~~Al~dAgl---~~~dID----~vv~g~~~~~~~---------------------~----~-~~a~~va~~ 67 (386)
T TIGR01930 21 AEDLGAAVIKELLERNPL---DPELID----DVIFGNVLQAGE---------------------Q----Q-NIARQAALL 67 (386)
T ss_pred HHHHHHHHHHHHHHHcCC---CHHHCC----EEEEEeccCCCC---------------------C----C-hHHHHHHHH
Confidence 478999999999999999 667777 677776421110 0 0 124457777
Q ss_pred hCCC--CcceeecccChHHHHHHHHHHHHHHhCCCCEEEEEeeccccc-hhhh---------h-Hh-----hh-cc----
Q 012221 206 LGFM--GPNYSISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAII-PIGL---------G-GF-----VA-CR---- 262 (468)
Q Consensus 206 lgl~--Gp~~~v~~acas~l~Al~~A~~~I~~G~~d~~lvgG~e~~~~-p~~~---------~-~~-----~~-~~---- 262 (468)
+|+. .|.+.|+++|+|++.+|..|+++|++|.+|.+||+|+|.+.. +... . .+ .. .+
T Consensus 68 lGl~~~~~~~~v~~~Casg~~al~~A~~~I~sG~~~~vLv~g~e~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 147 (386)
T TIGR01930 68 AGLPESVPAYTVNRQCASGLQAVILAAQLIRAGEADVVVAGGVESMSRVPYSLPRSRREGVDPGRFELEDQILKDGLTDP 147 (386)
T ss_pred cCCCCCceeeeecchhhHHHHHHHHHHHHHHCCCCCEEEEEEehhhccCccccccccccccccCccccchhhcCcccccc
Confidence 8886 389999999999999999999999999999999999886321 1000 0 00 00 00
Q ss_pred ------------ccccCC------------------CC-----------CC--------------C------------CC
Q 012221 263 ------------ALSQRN------------------DD-----------PQ--------------T------------AS 275 (468)
Q Consensus 263 ------------~l~~~~------------------~~-----------~~--------------~------------~~ 275 (468)
.+.+.+ .+ |. . ..
T Consensus 148 ~~~~~~a~~a~~y~~~yG~t~e~la~vav~~~~~A~~n~~~g~~~~~i~P~a~~~~~~~~~~~~da~~r~~~t~e~v~~s 227 (386)
T TIGR01930 148 LNGLSMGLTAENLAKKYGISREEQDEYALRSHQRAAKAWEEGLFKDEIVPVSVKGRKGPVTVSTDEGIRPNTTLEKLAKL 227 (386)
T ss_pred ccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHcCCCCCeEEEEEeccCCCCeEeCCCCCCCCCCCHHHHhCC
Confidence 000000 00 21 0 00
Q ss_pred CCCC------CCCCCeeecceeEEEEecchhHHHhcCCceEEEEEEEEEcCCCCCCCCCCCChHHHHHHHHHHHHHcCCC
Q 012221 276 RPWD------KDRDGFVMGEGAGVLVMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAGVS 349 (468)
Q Consensus 276 rpfd------~~~~G~v~gEGaaavvL~~~~~A~~~g~~i~a~i~g~~~~~d~~~~~~~~~~~~~~~~~i~~al~~Agl~ 349 (468)
+|.. ..-|...++||++++||++++.|++++.+++++|+|++.... .|.+...+..++++++|++|||+
T Consensus 228 ~~i~~P~~~l~~~d~~~~~dGAaa~vl~s~~~A~~~~~~~~~~i~g~g~~~~-----~~~~~~~~~~~a~~~a~~~Agi~ 302 (386)
T TIGR01930 228 KPAFDPNGTVTAGNSSPLNDGAAALLLMSEERAKELGLTPLARIVSFAVAGV-----DPEIMGLGPVPAIPKALKKAGLS 302 (386)
T ss_pred CCCcCCCCeeeCCccCCCCcceeEEEEecHHHHHHCCCCccEEEEEEEEecC-----CCccccccHHHHHHHHHHHcCCC
Confidence 1110 012344579999999999999999999999999999988753 22333445578999999999999
Q ss_pred CCCcCEEEEccCCCccCCHHHHHHHHHHhcc-CCCceeeecccccCccccchhHHHHHHHHHHHhcCCcCCCCCCCCCCC
Q 012221 350 PEEVNYINAHATSTLAGDLAEINAIKKVFKN-TTGIKINATKSMIGHCLGAAGGLEAIATVKAITTGWLHPSINQFNPEP 428 (468)
Q Consensus 350 ~~dId~v~~h~~gt~~~D~~E~~al~~~f~~-~~~~~v~s~k~~~Gh~~~AsG~~~l~~~~~~l~~~~~pp~~~~~~~~~ 428 (468)
|+|||++|.|.+++. .|.. ..+.|+- ..++++++++..+||+.+|+|+.+++++++||+..
T Consensus 303 ~~did~~e~~d~fa~----~~~~-~~e~lG~~~~pvn~~GG~l~~Ghp~gasG~~~~~e~~~qL~g~------------- 364 (386)
T TIGR01930 303 ISDIDLFEINEAFAA----QVLA-CIKELGLDLEKVNVNGGAIALGHPLGASGARIVTTLLHELKRR------------- 364 (386)
T ss_pred HHHCCeeehcchhHH----HHHH-HHHHhCCChhhcCCCCChHhhCCcHHHHHHHHHHHHHHHHHhc-------------
Confidence 999999999988873 3333 2333442 34688999999999999999999999999999863
Q ss_pred CCCcccccccccccCccEEEEEcccccCeeeEEEEe
Q 012221 429 SVEFDTVANKKQQHEVNVAISNSFGFGGHNSVVAFS 464 (468)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~l~~s~g~gG~n~~~vl~ 464 (468)
+.++++++..+-||...++||+
T Consensus 365 --------------~~~~gl~~~~~~gG~g~~~~~e 386 (386)
T TIGR01930 365 --------------GGRYGLATICIGGGQGIAVILE 386 (386)
T ss_pred --------------CCCEEEEEEeccCCceEEEEeC
Confidence 3468899888999999999885
|
This model represents a large family of enzymes which catalyze the thiolysis of a linear fatty acid CoA (or acetoacetyl-CoA) using a second CoA molecule to produce acetyl-CoA and a CoA-ester product two carbons shorter (or, alternatively, the condensation of two molecules of acetyl-CoA to produce acetoacetyl-CoA and CoA). This enzyme is also known as "thiolase", "3-ketoacyl-CoA thiolase", "beta-ketothiolase" and "Fatty oxidation complex beta subunit". When catalyzing the degradative reaction on fatty acids the corresponding EC number is 2.3.1.16. The condensation reaction corresponds to 2.3.1.9. Note that the enzymes which catalyze the condensation are generally not involved in fatty acid biosynthesis, which is carried out by a decarboxylating condensation of acetyl and malonyl esters of acyl carrier proteins. Rather, this activity may produce acetoacetyl-CoA for pathways such as IPP biosynthesis in the absence of sufficient fatt |
| >PRK12578 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.8e-25 Score=221.55 Aligned_cols=282 Identities=20% Similarity=0.192 Sum_probs=195.1
Q ss_pred HHHHHHHHHHHHHHHcCCCCccccccccccceEEEeecCCCccchHHHHHHHHHhCCCCcCCcCcchhhhhhhHHHHhhh
Q 012221 126 CLRYCIVAGKKALEDADLGADISKKIDKERAGVLVGTGMGGLTVFSDGVQALIEKGHRKITPFFIPYAITNMGSALLAID 205 (468)
Q Consensus 126 ~~~l~l~a~~~AL~dAgl~~~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~ia~~ 205 (468)
...|+.+++++||+|+|+ +++++| ++++|+...... ....+..++..
T Consensus 21 ~~eLa~~A~~~AL~dAgi---~~~dID----~vi~g~~~~~~~--------------------------~~~~a~~v~~~ 67 (385)
T PRK12578 21 VQELAWESIKEALNDAGV---SQTDIE----LVVVGSTAYRGI--------------------------ELYPAPIVAEY 67 (385)
T ss_pred HHHHHHHHHHHHHHHcCC---CHHHCC----EEEEEecccccc--------------------------cCChHHHHHHH
Confidence 357899999999999999 667777 688876431100 01124567888
Q ss_pred hCCCC-cceeecccChHHHHHHHHHHHHHHhCCCCEEEEEeeccccch---------------------hh-----hhHh
Q 012221 206 LGFMG-PNYSISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAIIP---------------------IG-----LGGF 258 (468)
Q Consensus 206 lgl~G-p~~~v~~acas~l~Al~~A~~~I~~G~~d~~lvgG~e~~~~p---------------------~~-----~~~~ 258 (468)
+|+++ +.++|+++|+|++.||..|+++|++|++|.+||+|+|.+... .. +..+
T Consensus 68 lGl~~~~~~~v~~~casg~~al~~A~~~I~sG~~~~vLvvg~e~~s~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~a~ 147 (385)
T PRK12578 68 SGLTGKVPLRVEAMCATGLAASLTAYTAVASGLVDMAIAVGVDKMTEVDTSTSLAIGGRGGNYQWEYHFYGTTFPTYYAL 147 (385)
T ss_pred hCCCCCCeeEEeccCHHHHHHHHHHHHHHHCCCCCEEEEEEEeecccCcccchhhhcccccccccccccCCCChHHHHHH
Confidence 99976 778999999999999999999999999999999999973211 00 0000
Q ss_pred hhccccccC------------------CCCCCCCC----------------CCCCCCCCCeeecceeEEEEecchhHHHh
Q 012221 259 VACRALSQR------------------NDDPQTAS----------------RPWDKDRDGFVMGEGAGVLVMESLEHAMK 304 (468)
Q Consensus 259 ~~~~~l~~~------------------~~~~~~~~----------------rpfd~~~~G~v~gEGaaavvL~~~~~A~~ 304 (468)
...+.+.+. ..+|.... .|+ ..-|...++||++++||++++.|++
T Consensus 148 ~a~~~m~~~g~t~e~~a~va~~~~~~A~~np~a~~~~~i~~e~v~~s~~i~~Pl-~~~d~~~~~DGAaA~vl~s~e~A~~ 226 (385)
T PRK12578 148 YATRHMAVYGTTEEQMALVSVKAHKYGAMNPKAHFQKPVTVEEVLKSRAISWPI-KLLDSCPISDGSATAIFASEEKVKE 226 (385)
T ss_pred HHHHHHHHhCcCHHHHHHHHHHHHHHHhcCChhhcCCCCCHHHHhcCCccCCCc-cHhhcCCcCCCeEEEEEecHHHHHh
Confidence 000000000 00122111 121 1234556899999999999999999
Q ss_pred cCCceEEEEEEEEEcCCCCCCC-CCCCCh-HHHHHHHHHHHHHcCCCCCCcCEEEEccCCCccCCHHHHHHHHHHh-cc-
Q 012221 305 RGAPIIAEYLGGAVNCDAYHMT-DPRADG-LGVSSCIESSLEDAGVSPEEVNYINAHATSTLAGDLAEINAIKKVF-KN- 380 (468)
Q Consensus 305 ~g~~i~a~i~g~~~~~d~~~~~-~~~~~~-~~~~~~i~~al~~Agl~~~dId~v~~h~~gt~~~D~~E~~al~~~f-~~- 380 (468)
.+.+++++|+|++...+..+.. .++... .+...+++++|++||++|+|||++|.|++++. .|+.+++.+- ..
T Consensus 227 l~~~~~~~I~g~g~~~~~~~~~~~~~~~~~~~~~~a~~~al~~Agi~~~DiD~~ei~d~ft~----~~l~~le~lGl~~~ 302 (385)
T PRK12578 227 LKIDSPVWITGIGYANDYAYVARRGEWVGFKATQLAARQAYNMAKVTPNDIEVATVHDAFTI----AEIMGYEDLGFTEK 302 (385)
T ss_pred cCCCCCeEEEEEEEecCcccccccccccccHHHHHHHHHHHHHcCCCHHHCCEEEecCcChH----HHHHHHHHcCCCCC
Confidence 8876779999999987766543 223222 35668999999999999999999999999985 5666655441 00
Q ss_pred ----------------CCCceeeecccccCccccchhHHHHHHHHHHHhcCCcCCCCCCCCCCCCCCccccccccccc-C
Q 012221 381 ----------------TTGIKINATKSMIGHCLGAAGGLEAIATVKAITTGWLHPSINQFNPEPSVEFDTVANKKQQH-E 443 (468)
Q Consensus 381 ----------------~~~~~v~s~k~~~Gh~~~AsG~~~l~~~~~~l~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~-~ 443 (468)
+.+++.+++-...||+.||+|+.+++++++||+... ...|.. .
T Consensus 303 G~~~~~~~~G~~~~~G~~pvN~~GG~la~GhP~gatG~~~v~e~~~qLrg~a--------------------g~~qv~~~ 362 (385)
T PRK12578 303 GKGGKFIEEGQSEKGGKVGVNLFGGLKAKGHPLGATGLSMIYEITKQLRDEA--------------------GKLQQPLK 362 (385)
T ss_pred CchHHHHHCCCccCCCCeeeCCCCCcccCCCCccHHHHHHHHHHHHHHhCCc--------------------ccCcCCcc
Confidence 114555666666699999999999999999998641 122222 2
Q ss_pred ccEEEEEccc-ccCeeeEEEEee
Q 012221 444 VNVAISNSFG-FGGHNSVVAFSA 465 (468)
Q Consensus 444 ~~~~l~~s~g-~gG~n~~~vl~~ 465 (468)
.+++++.+.| .|.++.+.||++
T Consensus 363 ~~~~l~~~~Gg~~~~~~~~v~~~ 385 (385)
T PRK12578 363 KYIGLVHNVGGTGHFAYVMILRR 385 (385)
T ss_pred hheEEEeccCcchhhEEEEEEeC
Confidence 4688888887 555566666653
|
|
| >PRK07850 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.3e-24 Score=217.14 Aligned_cols=271 Identities=16% Similarity=0.195 Sum_probs=192.6
Q ss_pred HHHHHHHHHHHHHHcCCCCccccccccccceEEEeecCCCccchHHHHHHHHHhCCCCcCCcCcchhhhhhhHHHHhhhh
Q 012221 127 LRYCIVAGKKALEDADLGADISKKIDKERAGVLVGTGMGGLTVFSDGVQALIEKGHRKITPFFIPYAITNMGSALLAIDL 206 (468)
Q Consensus 127 ~~l~l~a~~~AL~dAgl~~~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~ia~~l 206 (468)
..|+.++++++|+|+|+ ++.++| .|++|+....... ...++..++...
T Consensus 27 ~eL~~~a~~~aL~~agi---~~~~Id----~v~~G~~~~~~~q-------------------------~~~~ar~~~l~~ 74 (387)
T PRK07850 27 AELLGAVQRAVLDRAGI---DPGDVE----QVIGGCVTQAGEQ-------------------------SNNITRTAWLHA 74 (387)
T ss_pred HHHHHHHHHHHHHHcCC---CHHHCC----EEEEEeccccccc-------------------------cchHHHHHHHhC
Confidence 67899999999999999 666777 5888864311000 001234455667
Q ss_pred CCC--CcceeecccChHHHHHHHHHHHHHHhCCCCEEEEEeeccccc-hhhh---------------h----Hhh-----
Q 012221 207 GFM--GPNYSISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAII-PIGL---------------G----GFV----- 259 (468)
Q Consensus 207 gl~--Gp~~~v~~acas~l~Al~~A~~~I~~G~~d~~lvgG~e~~~~-p~~~---------------~----~~~----- 259 (468)
|+. -|.++|+++|+||+.|+..|++.|++|++|++||+|+|++.. |+.. . .+.
T Consensus 75 Gl~~~~p~~tV~~~CaSG~~A~~~A~~~I~sG~~dvvla~G~E~mS~~p~~~~~~~~~~~~~~~~~~~~~~~m~~~ae~~ 154 (387)
T PRK07850 75 GLPYHVGATTIDCQCGSAQQANHLVAGLIAAGAIDVGIACGVEAMSRVPLGANAGPGRGLPRPDSWDIDMPNQFEAAERI 154 (387)
T ss_pred CCCCCCceEEEecccccHHHHHHHHHHHHHCCCCCEEEEEeEecCCCCcccccccccccCccccccccCcchHHHHHHHH
Confidence 875 389999999999999999999999999999999999998532 2100 0 000
Q ss_pred --h----------------ccc--------ccc-----------CCCCCCCC---------C-----------CC-CCC-
Q 012221 260 --A----------------CRA--------LSQ-----------RNDDPQTA---------S-----------RP-WDK- 280 (468)
Q Consensus 260 --~----------------~~~--------l~~-----------~~~~~~~~---------~-----------rp-fd~- 280 (468)
. .+. +.. +..+|... . +| |..
T Consensus 155 ~~~ygisre~~d~~a~~sh~~a~~A~~~g~f~~ei~pv~~~~~~~~~np~~~~~~~~~D~~~r~~t~e~l~~l~p~~~~~ 234 (387)
T PRK07850 155 AKRRGITREDVDAFGLRSQRRAAQAWAEGRFDREISPVQAPVLDEEGQPTGETRLVTRDQGLRDTTMEGLAGLKPVLEGG 234 (387)
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHHHHcCCCcceeeeEeecccccccccCCCceEeecCCCcccCCHHHhccCCCCCCCC
Confidence 0 000 000 00001111 0 22 211
Q ss_pred ---CCCCeeecceeEEEEecchhHHHhcCCceEEEEEEEEEcCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCcCEEE
Q 012221 281 ---DRDGFVMGEGAGVLVMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAGVSPEEVNYIN 357 (468)
Q Consensus 281 ---~~~G~v~gEGaaavvL~~~~~A~~~g~~i~a~i~g~~~~~d~~~~~~~~~~~~~~~~~i~~al~~Agl~~~dId~v~ 357 (468)
..+...++|||+++||.+++.|++.+.++.++|+|++..... |.....+...+++++|+++|++++|||++|
T Consensus 235 ~~t~~~~~~~sDGAaa~vl~see~A~~l~~~p~~~i~g~~~~~~~-----~~~~~~~~~~a~~~al~~agl~~~did~~e 309 (387)
T PRK07850 235 IHTAGTSSQISDGAAAVLWMDEDRARALGLRPRARIVAQALVGAE-----PYYHLDGPVQATAKVLEKAGMKIGDIDLVE 309 (387)
T ss_pred CccchhcCCcCCceEEEEEecHHHHHHcCCCCcEEEEEEEEeccC-----chhhcchHHHHHHHHHHHcCCCHHHcCeee
Confidence 114445899999999999999999998888999999875422 222234557899999999999999999999
Q ss_pred EccCCCccCCHHHHHHHHHHhc-cCCCceeeecccccCccccchhHHHHHHHHHHHhcCCcCCCCCCCCCCCCCCccccc
Q 012221 358 AHATSTLAGDLAEINAIKKVFK-NTTGIKINATKSMIGHCLGAAGGLEAIATVKAITTGWLHPSINQFNPEPSVEFDTVA 436 (468)
Q Consensus 358 ~h~~gt~~~D~~E~~al~~~f~-~~~~~~v~s~k~~~Gh~~~AsG~~~l~~~~~~l~~~~~pp~~~~~~~~~~~~~~~~~ 436 (468)
.|..++. .|+..++ .++ ...+++++++...+||+.+|+|+..++++++||+.+
T Consensus 310 i~d~F~~----~~l~~~e-~lg~~~~pvN~~GG~la~Ghp~gatG~~~v~e~~~qL~~~--------------------- 363 (387)
T PRK07850 310 INEAFAS----VVLSWAQ-VHEPDMDKVNVNGGAIALGHPVGSTGARLITTALHELERT--------------------- 363 (387)
T ss_pred ecccchH----HHHHHHH-HcCCCCCCcCCCCchhhcCCCcchhHHHHHHHHHHHHHhc---------------------
Confidence 9988875 4444443 333 234788999999999999999999999999999763
Q ss_pred ccccccCccEEEEEcccccCeeeEEEEeec
Q 012221 437 NKKQQHEVNVAISNSFGFGGHNSVVAFSAF 466 (468)
Q Consensus 437 ~~~~~~~~~~~l~~s~g~gG~n~~~vl~~~ 466 (468)
..++++++..+-||...+++|+++
T Consensus 364 ------~~~~g~~~~c~~gg~g~a~~~e~~ 387 (387)
T PRK07850 364 ------DKSTALITMCAGGALSTGTIIERI 387 (387)
T ss_pred ------CCCeEEEEEccccCceeEEEEEeC
Confidence 135678777788899999999863
|
|
| >PRK05790 putative acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.2e-25 Score=221.36 Aligned_cols=271 Identities=23% Similarity=0.312 Sum_probs=192.3
Q ss_pred HHHHHHHHHHHHHHHcCCCCccccccccccceEEEeecCCCccchHHHHHHHHHhCCCCcCCcCcchhhhhhhHHHHhhh
Q 012221 126 CLRYCIVAGKKALEDADLGADISKKIDKERAGVLVGTGMGGLTVFSDGVQALIEKGHRKITPFFIPYAITNMGSALLAID 205 (468)
Q Consensus 126 ~~~l~l~a~~~AL~dAgl~~~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~ia~~ 205 (468)
...|+.+|+++||+|||+ +++++| ++++|+....... ...+..+...
T Consensus 26 ~~~La~~A~~~AL~dAgl---~~~dID----~vi~g~~~~~~~~--------------------------~~~~~~~~~~ 72 (393)
T PRK05790 26 AVELGAIVIKAALERAGV---PPEQVD----EVIMGQVLQAGAG--------------------------QNPARQAALK 72 (393)
T ss_pred HHHHHHHHHHHHHHHcCC---CHHHCC----eEEEEEecCCCCC--------------------------CcHHHHHHHH
Confidence 467899999999999999 667787 6888864321000 0012224445
Q ss_pred hCCC--CcceeecccChHHHHHHHHHHHHHHhCCCCEEEEEeeccccch-hh--------------h-------------
Q 012221 206 LGFM--GPNYSISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAIIP-IG--------------L------------- 255 (468)
Q Consensus 206 lgl~--Gp~~~v~~acas~l~Al~~A~~~I~~G~~d~~lvgG~e~~~~p-~~--------------~------------- 255 (468)
+|+. -|.++|+.+|+|++.||..|+++|++|++|++||+|+|.+... .. .
T Consensus 73 ~gl~~~~~~~~v~~~Casg~~al~~A~~~I~sG~~d~vLv~G~e~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (393)
T PRK05790 73 AGLPVEVPALTINKVCGSGLKAVALAAQAIRAGDADIVVAGGQESMSQAPHVLPGSRWGQKMGDVELVDTMIHDGLTDAF 152 (393)
T ss_pred cCCCCCCceeeecccchHHHHHHHHHHHHHHcCCCCEEEEEeeeccccCcccccccccccccCcchhhhhhccccccccc
Confidence 6764 4899999999999999999999999999999999999973110 00 0
Q ss_pred ----hHhhhccccccCC------------------C---C--------C---------------CC------------CC
Q 012221 256 ----GGFVACRALSQRN------------------D---D--------P---------------QT------------AS 275 (468)
Q Consensus 256 ----~~~~~~~~l~~~~------------------~---~--------~---------------~~------------~~ 275 (468)
..+...+.+.+.+ . . | +. ..
T Consensus 153 ~~~~~a~~a~~y~~~yG~tre~la~vav~~~~~A~~~~~~g~~~~~i~P~~~~~~~~~~~~~~~d~~~~~~~~~e~l~~~ 232 (393)
T PRK05790 153 NGYHMGITAENLAEQYGITREEQDEFALASQQKAEAAIKAGRFKDEIVPVTIKQRKGDPVVVDTDEHPRPDTTAESLAKL 232 (393)
T ss_pred CCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHcCCCcceEeeEEecCCCCCceEecCCCCCCCCCCHHHHhCC
Confidence 0000000000000 0 0 0 00 01
Q ss_pred CC-CCC-----CCCCeeecceeEEEEecchhHHHhcCCceEEEEEEEEEcCCCCCCCCCCCChHHHHHHHHHHHHHcCCC
Q 012221 276 RP-WDK-----DRDGFVMGEGAGVLVMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAGVS 349 (468)
Q Consensus 276 rp-fd~-----~~~G~v~gEGaaavvL~~~~~A~~~g~~i~a~i~g~~~~~d~~~~~~~~~~~~~~~~~i~~al~~Agl~ 349 (468)
+| ||. ..|...++|||+++||++++.|++++.+++++|+|++.... .+.....+...+++++|+++|++
T Consensus 233 ~~v~~~~g~lt~~d~~~~~DGAaavvl~s~e~a~~~~~~~~~~I~g~~~~~~-----~~~~~~~~~~~a~~~a~~~Agi~ 307 (393)
T PRK05790 233 RPAFDKDGTVTAGNASGINDGAAAVVVMSEAKAKELGLTPLARIVSYAVAGV-----DPAIMGIGPVPAIRKALEKAGWS 307 (393)
T ss_pred CCccCCCCCEeCCcCCCCCCceEEEEEecHHHHHHCCCCeeEEEEEEEEccC-----CCCccchhHHHHHHHHHHHcCCC
Confidence 11 111 01455689999999999999999999999999999998753 23333445678999999999999
Q ss_pred CCCcCEEEEccCCCccCCHHHHHHHHHHhcc-CCCceeeecccccCccccchhHHHHHHHHHHHhcCCcCCCCCCCCCCC
Q 012221 350 PEEVNYINAHATSTLAGDLAEINAIKKVFKN-TTGIKINATKSMIGHCLGAAGGLEAIATVKAITTGWLHPSINQFNPEP 428 (468)
Q Consensus 350 ~~dId~v~~h~~gt~~~D~~E~~al~~~f~~-~~~~~v~s~k~~~Gh~~~AsG~~~l~~~~~~l~~~~~pp~~~~~~~~~ 428 (468)
|+|||++|+|+.++. .++. ..+.|+- ..++++++++..+||+.||+|+++++++++||+..
T Consensus 308 ~~did~~e~~d~f~~----~~l~-~~e~lg~~~~pvN~~GG~l~~Ghp~gatG~~~~~e~~~qL~~~------------- 369 (393)
T PRK05790 308 LADLDLIEINEAFAA----QALA-VEKELGLDPEKVNVNGGAIALGHPIGASGARILVTLLHEMKRR------------- 369 (393)
T ss_pred HHHCCEEEeCcHHHH----HHHH-HHHHhCCChhhcCCCcchhhhCcchhhhHHHHHHHHHHHHHhc-------------
Confidence 999999999865442 1222 2334442 35789999999999999999999999999999863
Q ss_pred CCCcccccccccccCccEEEEEcccccCeeeEEEEeec
Q 012221 429 SVEFDTVANKKQQHEVNVAISNSFGFGGHNSVVAFSAF 466 (468)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~l~~s~g~gG~n~~~vl~~~ 466 (468)
..++++++..|-||..+++||+++
T Consensus 370 --------------~~~~gl~~~~~~~g~g~~~~~e~~ 393 (393)
T PRK05790 370 --------------GAKKGLATLCIGGGQGVALIVERP 393 (393)
T ss_pred --------------CCCeEEEEEeccCCceeEEEEEcC
Confidence 236899999999999999999874
|
|
| >PRK08235 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.9e-24 Score=216.69 Aligned_cols=270 Identities=21% Similarity=0.275 Sum_probs=189.9
Q ss_pred HHHHHHHHHHHHHHcCCCCccccccccccceEEEeecCCCccchHHHHHHHHHhCCCCcCCcCcchhhhhhhHHHHhhhh
Q 012221 127 LRYCIVAGKKALEDADLGADISKKIDKERAGVLVGTGMGGLTVFSDGVQALIEKGHRKITPFFIPYAITNMGSALLAIDL 206 (468)
Q Consensus 127 ~~l~l~a~~~AL~dAgl~~~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~ia~~l 206 (468)
..|+.+|+++||+++|+ +++++| .|++|+.....+ +. .++..++..+
T Consensus 27 ~eLa~~A~~~aL~~agl---~~~dID----~vi~g~~~~~~~-----------------------~~---~~~~~~~~~~ 73 (393)
T PRK08235 27 TELGGIAIKEALERANV---SAEDVE----EVIMGTVLQGGQ-----------------------GQ---IPSRQAARAA 73 (393)
T ss_pred HHHHHHHHHHHHHHcCC---CHHHCC----EEEEEecccCCC-----------------------CC---CHHHHHHHHc
Confidence 67899999999999999 667777 688887532100 00 1133456778
Q ss_pred CCC--CcceeecccChHHHHHHHHHHHHHHhCCCCEEEEEeeccccc-hhhh--------------------hH-hhh--
Q 012221 207 GFM--GPNYSISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAII-PIGL--------------------GG-FVA-- 260 (468)
Q Consensus 207 gl~--Gp~~~v~~acas~l~Al~~A~~~I~~G~~d~~lvgG~e~~~~-p~~~--------------------~~-~~~-- 260 (468)
|+. -|.++|+++|+||+.||+.|+++|++|++|++||+|+|.+.. |... .. ...
T Consensus 74 Gl~~~~p~~~V~~~CaSg~~Al~~A~~~I~sG~~d~vLvvG~E~ms~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (393)
T PRK08235 74 GIPWEVQTETVNKVCASGLRAVTLADQIIRAGDASVIVAGGMESMSNAPYILPGARWGYRMGDNEVIDLMVADGLTCAFS 153 (393)
T ss_pred CCCCCcceeehhhhhhHHHHHHHHHHHHHHCCCCCEEEEEeeeccccCcccccccccccccCCchhhhhhcccccccccC
Confidence 884 489999999999999999999999999999999999997532 2100 00 000
Q ss_pred ---cc-----ccccC--------------------C------------------------CCCCCCCC------------
Q 012221 261 ---CR-----ALSQR--------------------N------------------------DDPQTASR------------ 276 (468)
Q Consensus 261 ---~~-----~l~~~--------------------~------------------------~~~~~~~r------------ 276 (468)
+. .+.+. + .+|+...|
T Consensus 154 ~~~~~~~A~~~~~~ygitre~~d~~avksh~~a~~a~~~g~~~~ei~pv~~~~~~~~~~~~~~da~~r~~~t~e~~~~~~ 233 (393)
T PRK08235 154 GVHMGVYGGEVAKELGISREAQDEWAYRSHQRAVSAHEEGRFEEEIVPVTIPQRKGDPIVVAKDEAPRKDTTIEKLAKLK 233 (393)
T ss_pred CCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHcCCCCceEeeeEecCCCCCceEeCCCCCCCCCCCHHHHhcCC
Confidence 00 00000 0 01222222
Q ss_pred C-CCC-----CCCCeeecceeEEEEecchhHHHhcCCceEEEEEEEEEcCCCCCCCCCCCChHHHHHHHHHHHHHcCCCC
Q 012221 277 P-WDK-----DRDGFVMGEGAGVLVMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAGVSP 350 (468)
Q Consensus 277 p-fd~-----~~~G~v~gEGaaavvL~~~~~A~~~g~~i~a~i~g~~~~~d~~~~~~~~~~~~~~~~~i~~al~~Agl~~ 350 (468)
| |+. ..+...++|||+++||++++.|++++.+++++|.|++....... ........+++++|+++||+|
T Consensus 234 ~v~~p~g~lt~~~~~~~~DGAaa~vl~s~~~A~~~~~~p~~~i~g~~~~~~~~~-----~~~~~~~~a~~~al~~agl~~ 308 (393)
T PRK08235 234 PVFDKTGTITAGNAPGVNDGAAALVLMSEDRAKQEGRKPLATILAHTAIAVEAK-----DFPRTPGYAINALLEKTGKTV 308 (393)
T ss_pred CcccCCCcEeccccCCCCCceEEEEEecHHHHHHCCCCceEEEEEEEecccChh-----hhcchHHHHHHHHHHHhCCCH
Confidence 1 110 11334479999999999999999999999999999876543211 112234579999999999999
Q ss_pred CCcCEEEEccCCCccCCHHHHHHHHHHhcc-CCCceeeecccccCccccchhHHHHHHHHHHHhcCCcCCCCCCCCCCCC
Q 012221 351 EEVNYINAHATSTLAGDLAEINAIKKVFKN-TTGIKINATKSMIGHCLGAAGGLEAIATVKAITTGWLHPSINQFNPEPS 429 (468)
Q Consensus 351 ~dId~v~~h~~gt~~~D~~E~~al~~~f~~-~~~~~v~s~k~~~Gh~~~AsG~~~l~~~~~~l~~~~~pp~~~~~~~~~~ 429 (468)
+|||++|.|..++. .|+..+ +.|+- ..++++++++..+||+.||+|+.+++.+++||+.+
T Consensus 309 ~did~~e~~d~f~~----~~l~~~-e~lg~~~~pvN~~GG~la~Ghp~gasG~~~~~~l~~qL~~~-------------- 369 (393)
T PRK08235 309 EDIDLFEINEAFAA----VALAST-EIAGIDPEKVNVNGGAVALGHPIGASGARIIVTLIHELKRR-------------- 369 (393)
T ss_pred HHCCeehhcchhHH----HHHHHH-HHhCCCcccCCcCCchHHhCCcHHHHHHHHHHHHHHHHHhc--------------
Confidence 99999998866553 233333 33442 35789999999999999999999999999999863
Q ss_pred CCcccccccccccCccEEEEEcccccCeeeEEEEeec
Q 012221 430 VEFDTVANKKQQHEVNVAISNSFGFGGHNSVVAFSAF 466 (468)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~l~~s~g~gG~n~~~vl~~~ 466 (468)
..++.+.+...-||...++||++.
T Consensus 370 -------------~~~~g~~~~c~~gG~g~a~~~e~~ 393 (393)
T PRK08235 370 -------------GGGIGIAAICSGGGQGDAVLIEVH 393 (393)
T ss_pred -------------CCCeEEEEEcccccceEEEEEEeC
Confidence 123467777777889999999863
|
|
| >PRK06445 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=9.1e-25 Score=219.60 Aligned_cols=273 Identities=20% Similarity=0.275 Sum_probs=196.2
Q ss_pred HHHHHHHHHHHHHHHcCCCCccccccccccceEEEeecCCCcc-chHHHHHHHHHhCCCCcCCcCcchhhhhhhHHHHhh
Q 012221 126 CLRYCIVAGKKALEDADLGADISKKIDKERAGVLVGTGMGGLT-VFSDGVQALIEKGHRKITPFFIPYAITNMGSALLAI 204 (468)
Q Consensus 126 ~~~l~l~a~~~AL~dAgl~~~~~~~~~~~~~gv~~g~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~ia~ 204 (468)
...|+.+++++||+|+|+ +++++| .|++|+...... ..... . ...+..
T Consensus 32 ~~~L~~~a~~~AL~~agl---~~~dID----~vi~g~~~~~~~~~~~~~-----------------------~-~~~l~a 80 (394)
T PRK06445 32 PEELAAMLINRLIEKTGI---KPEEID----DIITGCALQVGENWLYGG-----------------------R-HPIFLA 80 (394)
T ss_pred HHHHHHHHHHHHHHHcCC---CHHHCC----eeEEEeecCCCcccccHH-----------------------H-HHHHHc
Confidence 367899999999999999 667787 688887543211 00000 0 111222
Q ss_pred hhCCCCcceeecccChHHHHHHHHHHHHHHhCCCCEEEEEeeccccc-hh----------hh----------------hH
Q 012221 205 DLGFMGPNYSISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAII-PI----------GL----------------GG 257 (468)
Q Consensus 205 ~lgl~Gp~~~v~~acas~l~Al~~A~~~I~~G~~d~~lvgG~e~~~~-p~----------~~----------------~~ 257 (468)
.++.+-|+++|+++|+|++.|++.|+++|++|.+|++||+|+|.+.. |. .+ .+
T Consensus 81 ~~~~~~p~~~V~~~CaSg~~ai~~A~~~I~sG~~d~vLv~G~e~ms~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 160 (394)
T PRK06445 81 RLPYNIPAMAVDRQCASSLTTVSIGAMEIATGMADIVIAGGVEHMTRTPMGDNPHIEPNPKLLTDPKYIEYDLTTGYVMG 160 (394)
T ss_pred CCCCCCcchhhhhhhHHHHHHHHHHHHHHHcCCCCEEEEeeecccccCccccCccccCChhhccccccCcccccCCCCHH
Confidence 23444589999999999999999999999999999999999995321 10 00 00
Q ss_pred hhhccccccC-------------------C------------------------CCCCCCCC------------C-CCC-
Q 012221 258 FVACRALSQR-------------------N------------------------DDPQTASR------------P-WDK- 280 (468)
Q Consensus 258 ~~~~~~l~~~-------------------~------------------------~~~~~~~r------------p-fd~- 280 (468)
....+.+.+. . .+|+...| | |+.
T Consensus 161 ~~a~~~~~~ygitre~~a~va~~sh~~A~~a~~~g~~~~ei~p~~~~~~~~~~~~npda~~r~~~t~e~~~~~~~v~~~~ 240 (394)
T PRK06445 161 LTAEKLAEEAGIKREEMDRWSLRSHQLAAKAIQEGYFKDEILPIEVEVEGKKKVVDVDQSVRPDTSLEKLAKLPPAFKPD 240 (394)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHcCCCcceEeEEEecCCCCceeeCCCCCCCCCCCHHHHhcCCCccCCC
Confidence 0000000000 0 02222122 1 110
Q ss_pred ----CCCCeeecceeEEEEecchhHHHhcCCceEEEEEEEEEcCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCcCEE
Q 012221 281 ----DRDGFVMGEGAGVLVMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAGVSPEEVNYI 356 (468)
Q Consensus 281 ----~~~G~v~gEGaaavvL~~~~~A~~~g~~i~a~i~g~~~~~d~~~~~~~~~~~~~~~~~i~~al~~Agl~~~dId~v 356 (468)
..+...++|||+++||++++.|++++.+++++|+|++...+ .|...+.+...+++++|+++|++++||||+
T Consensus 241 g~lt~~~~~~~~DGAaavvl~s~~~A~~~~~~~~a~i~g~~~~~~-----~~~~~~~~~~~a~~~al~~Agl~~~dId~~ 315 (394)
T PRK06445 241 GVITAGNSSPLNSGASYVLLMSKKAVKKYGLKPMAKIRSFGFAGV-----PPAIMGKGPVPASKKALEKAGLSVKDIDLW 315 (394)
T ss_pred CcEecCcCCCCCCceEEEEEecHHHHHHCCCCceEEEEEEEEecc-----CCchhcchHHHHHHHHHHHcCCCHHHcCEE
Confidence 12344579999999999999999999999999999998863 233345567889999999999999999999
Q ss_pred EEccCCCccCCHHHHHHHHHHhccCCCceeeecccccCccccchhHHHHHHHHHHHhcCCcCCCCCCCCCCCCCCccccc
Q 012221 357 NAHATSTLAGDLAEINAIKKVFKNTTGIKINATKSMIGHCLGAAGGLEAIATVKAITTGWLHPSINQFNPEPSVEFDTVA 436 (468)
Q Consensus 357 ~~h~~gt~~~D~~E~~al~~~f~~~~~~~v~s~k~~~Gh~~~AsG~~~l~~~~~~l~~~~~pp~~~~~~~~~~~~~~~~~ 436 (468)
|.|+.++. .|+..++.+.-...+++++++...+||+.||+|+++++++++||+.
T Consensus 316 e~~d~f~~----~~l~~~e~lg~~~~~vN~~GG~la~Ghp~gatG~~~v~e~~~qL~~---------------------- 369 (394)
T PRK06445 316 EINEAFAV----VVLYAIKELGLDPETVNIKGGAIAIGHPLGATGARIVGTLARQLQI---------------------- 369 (394)
T ss_pred EecccchH----HHHHHHHHhCCCccccCCCCCHHHcCCCccchHHHHHHHHHHHHHh----------------------
Confidence 99998875 5666666553234578999999999999999999999999999972
Q ss_pred ccccccCccEEEEEcccccCeeeEEEEee
Q 012221 437 NKKQQHEVNVAISNSFGFGGHNSVVAFSA 465 (468)
Q Consensus 437 ~~~~~~~~~~~l~~s~g~gG~n~~~vl~~ 465 (468)
...++++++..+-||+..++||+.
T Consensus 370 -----~~~~~gl~~~~~~gg~g~a~~~e~ 393 (394)
T PRK06445 370 -----KGKDYGVATLCVGGGQGGAVVLER 393 (394)
T ss_pred -----cCCCEEEEEEcccCChhhEEEEEc
Confidence 134678999999999999999986
|
|
| >PRK07108 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.6e-25 Score=219.69 Aligned_cols=272 Identities=17% Similarity=0.208 Sum_probs=197.2
Q ss_pred HHHHHHHHHHHHHHHcCCCCccccccccccceEEEeecCCCccchHHHHHHHHHhCCCCcCCcCcchhhhhhhHHHHhhh
Q 012221 126 CLRYCIVAGKKALEDADLGADISKKIDKERAGVLVGTGMGGLTVFSDGVQALIEKGHRKITPFFIPYAITNMGSALLAID 205 (468)
Q Consensus 126 ~~~l~l~a~~~AL~dAgl~~~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~ia~~ 205 (468)
...|+.+++++||+++|+ +++++| .|++|+...+.. . ...++..++..
T Consensus 27 ~~dL~~~A~~~aL~~agi---~~~~ID----~vi~G~~~~~~~----------------------~---~~~~a~~i~~~ 74 (392)
T PRK07108 27 GATLGGHVVQHAVERAKL---DPAEVE----DVIMGCANPEGA----------------------T---GANIARQIALR 74 (392)
T ss_pred HHHHHHHHHHHHHHHcCC---CHHHCC----cEEEEEeecccc----------------------c---ccHHHHHHHHH
Confidence 578999999999999999 666777 588887542211 0 01246678888
Q ss_pred hCCC--CcceeecccChHHHHHHHHHHHHHHhCCCCEEEEEeeccccc-hhh---------hhH------hhhccc----
Q 012221 206 LGFM--GPNYSISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAII-PIG---------LGG------FVACRA---- 263 (468)
Q Consensus 206 lgl~--Gp~~~v~~acas~l~Al~~A~~~I~~G~~d~~lvgG~e~~~~-p~~---------~~~------~~~~~~---- 263 (468)
+|+. .|+++|+++|+||+.||+.|+++|++|++|++||||+|++.. |.. +.. +..++.
T Consensus 75 lGl~~~~p~~~V~~aCaSg~~Al~~A~~~I~sG~~d~vlagGvE~ms~~p~~~~~~~~~~~~~~~~~~~~~~~m~~~ae~ 154 (392)
T PRK07108 75 AGLPVTVPGMTVNRFCSSGLQTIALAAQRVIAGEGDVFVAGGVESISCVQNEMNRHMLREGWLVEHKPEIYWSMLQTAEN 154 (392)
T ss_pred cCCCCCCceeeecchhhHHHHHHHHHHHHHHCCCCCEEEEEEEeccCCCCCcCCCcCccchhhhccCCccccCHHHHHHH
Confidence 8985 699999999999999999999999999999999999998532 110 000 000000
Q ss_pred ------c-----------cc-------C--------------C--CCCCCC--------------------------CC-
Q 012221 264 ------L-----------SQ-------R--------------N--DDPQTA--------------------------SR- 276 (468)
Q Consensus 264 ------l-----------~~-------~--------------~--~~~~~~--------------------------~r- 276 (468)
+ ++ . + .+|... .+
T Consensus 155 ~a~~~~i~r~~~d~~a~~s~~~A~~A~k~g~~~~ei~pv~~~~~~~n~~a~~~~~~~~~~~~de~~r~~~t~e~l~~l~~ 234 (392)
T PRK07108 155 VAKRYGISKERQDEYGVQSQQRAAAAQAAGRFDDEIVPITVTAGVADKATGRLFTKEVTVSADEGIRPDTTLEGVSKIRS 234 (392)
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHHHHcCCCcCceeeEEecccccccccCcccccceeEccCCCCCCCCCHHHHhcCCC
Confidence 0 00 0 0 001000 11
Q ss_pred CCC----CCCCCeeecceeEEEEecchhHHHhcCCceEEEEEEEEEcCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCC
Q 012221 277 PWD----KDRDGFVMGEGAGVLVMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAGVSPEE 352 (468)
Q Consensus 277 pfd----~~~~G~v~gEGaaavvL~~~~~A~~~g~~i~a~i~g~~~~~d~~~~~~~~~~~~~~~~~i~~al~~Agl~~~d 352 (468)
+|. ...|...++|||+++||++++.|+++|.+++++|+|++...+ .|+..+.+...+++++|+++||+|+|
T Consensus 235 ~~~~g~lt~~n~~~~~DGAaa~vl~s~~~A~~~g~~~~~~i~g~~~~~~-----~~~~~~~~~~~a~~~al~~agl~~~D 309 (392)
T PRK07108 235 ALPGGVITAGNASQFSDGASACVVMNAKVAEREGLQPLGIFRGFAVAGC-----EPDEMGIGPVFAVPKLLKQAGLKVDD 309 (392)
T ss_pred CCCCCCCcCCcCCCCCCceEEEEEecHHHHHHCCCCceEEEEEEEEecc-----CCcccchhHHHHHHHHHHHcCCCHHH
Confidence 121 012344589999999999999999999999999999998763 34445556788999999999999999
Q ss_pred cCEEEEccCCCccCCHHHHHHHHHHhc-cCCCceeeecccccCccccchhHHHHHHHHHHHhcCCcCCCCCCCCCCCCCC
Q 012221 353 VNYINAHATSTLAGDLAEINAIKKVFK-NTTGIKINATKSMIGHCLGAAGGLEAIATVKAITTGWLHPSINQFNPEPSVE 431 (468)
Q Consensus 353 Id~v~~h~~gt~~~D~~E~~al~~~f~-~~~~~~v~s~k~~~Gh~~~AsG~~~l~~~~~~l~~~~~pp~~~~~~~~~~~~ 431 (468)
||++|.|..++. .|+..++.+ + ...++++++++..+||+.||+|+..++.++.+|+++
T Consensus 310 id~~ei~eafa~----~~l~~~e~l-g~~~~~vN~~GG~~a~GHp~gatG~r~~~~l~~~l~~~---------------- 368 (392)
T PRK07108 310 IDLWELNEAFAV----QVLYCRDTL-GIPMDRLNVNGGAIAVGHPYGVSGARLTGHALIEGKRR---------------- 368 (392)
T ss_pred cCchHhhhHHHH----HHHHHHHhc-CCCccccCCCCChHHhCcchhhhHHHHHHHHHHHHHhh----------------
Confidence 999998855543 232222222 2 235789999999999999999999999999999762
Q ss_pred cccccccccccCccEEEEEcccccCeeeEEEEeec
Q 012221 432 FDTVANKKQQHEVNVAISNSFGFGGHNSVVAFSAF 466 (468)
Q Consensus 432 ~~~~~~~~~~~~~~~~l~~s~g~gG~n~~~vl~~~ 466 (468)
..++++++..+-||...++||++.
T Consensus 369 -----------~~~~g~~~~c~~gg~g~a~~ie~~ 392 (392)
T PRK07108 369 -----------GAKYVVVTMCIGGGQGAAGLFEVL 392 (392)
T ss_pred -----------CCCEEEEEEccccChhhEEEEEeC
Confidence 135788888888899999999863
|
|
| >PRK07661 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=9.3e-25 Score=218.56 Aligned_cols=270 Identities=19% Similarity=0.246 Sum_probs=195.8
Q ss_pred HHHHHHHHHHHHHHHcCCCCccccccccccceEEEeecCCCccchHHHHHHHHHhCCCCcCCcCcchhhhhhhHHHHhhh
Q 012221 126 CLRYCIVAGKKALEDADLGADISKKIDKERAGVLVGTGMGGLTVFSDGVQALIEKGHRKITPFFIPYAITNMGSALLAID 205 (468)
Q Consensus 126 ~~~l~l~a~~~AL~dAgl~~~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~ia~~ 205 (468)
...|+.+++++||+++|+ .++++| .+++|+...... .+ ..++..++..
T Consensus 27 ~~eLa~~A~~~AL~~ag~---~~~dID----~vi~g~~~~~~~----------------------~g---~~~a~~~~~~ 74 (391)
T PRK07661 27 PDDLGALVVKETLKRAGN---YEGPID----DLIIGCAMPEAE----------------------QG---LNMARNIGAL 74 (391)
T ss_pred HHHHHHHHHHHHHHhcCC---ChhHCC----EEEEEecccccc----------------------cc---chHHHHHHHH
Confidence 367899999999999987 345666 688886432100 00 1124457778
Q ss_pred hCCC--CcceeecccChHHHHHHHHHHHHHHhCCCCEEEEEeeccccc-hh----------------hh---hHhhhccc
Q 012221 206 LGFM--GPNYSISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAII-PI----------------GL---GGFVACRA 263 (468)
Q Consensus 206 lgl~--Gp~~~v~~acas~l~Al~~A~~~I~~G~~d~~lvgG~e~~~~-p~----------------~~---~~~~~~~~ 263 (468)
+|+. -|.++|+++|+||+.|+..|++.|++|++|++||+|+|.+.. |. .+ .++...+.
T Consensus 75 lGl~~~~p~~~V~~aCaSG~~Al~~A~~~I~sG~~d~vLv~G~E~ms~~~~~~~~~~~~~~~~~~~~~~~~~m~~~a~~~ 154 (391)
T PRK07661 75 AGLPYTVPAITINRYCSSGLQSIAYGAERIMLGHSEAVIAGGAESMSLVPMMGHVVRPNPRLVEAAPEYYMGMGHTAEQV 154 (391)
T ss_pred cCCCCCcceeehhhhhhHHHHHHHHHHHHHHcCCCCEEEEEEEeecccCCccccccCCCccccccccchhhhHHHHHHHH
Confidence 8987 399999999999999999999999999999999999997432 10 00 00000000
Q ss_pred cccCC------------------CCCCC----------------------------------------------CCCCC-
Q 012221 264 LSQRN------------------DDPQT----------------------------------------------ASRPW- 278 (468)
Q Consensus 264 l~~~~------------------~~~~~----------------------------------------------~~rpf- 278 (468)
+.+.+ .+|.. ..+|.
T Consensus 155 ~~~~g~tre~~a~~av~s~~~a~~n~~ag~~~~ei~pi~~~~~~~~~~~~~~~~~~~~~~d~~~rp~~~~e~l~~l~p~f 234 (391)
T PRK07661 155 AVKYGISREDQDAFAVRSHQRAAKALAEGKFADEIVPVDVTLRTVGENNKLQEETITFSQDEGVRADTTLEILGKLRPAF 234 (391)
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHHHHcCCCccceeeeecccccccccCcccccceeEecCCCCCCCCCHHHHhcCCCCc
Confidence 00000 00000 00121
Q ss_pred C-----CCCCCeeecceeEEEEecchhHHHhcCCceEEEEEEEEEcCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCc
Q 012221 279 D-----KDRDGFVMGEGAGVLVMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAGVSPEEV 353 (468)
Q Consensus 279 d-----~~~~G~v~gEGaaavvL~~~~~A~~~g~~i~a~i~g~~~~~d~~~~~~~~~~~~~~~~~i~~al~~Agl~~~dI 353 (468)
. ...|...++|||+++||++++.|+++|.+++++|+|++...+ .|...+.+...+++++|+++||+++||
T Consensus 235 ~~~g~lt~~~~~~~~DGAaavvl~s~~~A~~~g~~~~~~i~g~~~~~~-----~~~~~~~~~~~a~~~al~~agl~~~di 309 (391)
T PRK07661 235 NVKGSVTAGNSSQMSDGAAAVLLMDREKAESDGLKPLAKFRSFAVAGV-----PPEVMGIGPIAAIPKALKLAGLELSDI 309 (391)
T ss_pred CCCCCEeccccCCCCCceEEEEEecHHHHHHCCCCceEEEEEEEEecC-----CCcccchHHHHHHHHHHHHcCCCHHHC
Confidence 0 112334489999999999999999999999999999999864 233344567889999999999999999
Q ss_pred CEEEEccCCCccCCHHHHHHHHH--Hhcc-CCCceeeecccccCccccchhHHHHHHHHHHHhcCCcCCCCCCCCCCCCC
Q 012221 354 NYINAHATSTLAGDLAEINAIKK--VFKN-TTGIKINATKSMIGHCLGAAGGLEAIATVKAITTGWLHPSINQFNPEPSV 430 (468)
Q Consensus 354 d~v~~h~~gt~~~D~~E~~al~~--~f~~-~~~~~v~s~k~~~Gh~~~AsG~~~l~~~~~~l~~~~~pp~~~~~~~~~~~ 430 (468)
|+||.| |.++...+.. .|+- ..++++++++..+||+.||+|+++++.+++||+++
T Consensus 310 d~~ei~-------d~f~~~~l~~~e~lg~~~~~vN~~GG~~a~Ghp~gasG~~~~~el~~qL~~~--------------- 367 (391)
T PRK07661 310 GLFELN-------EAFASQSIQVIRELGLDEEKVNVNGGAIALGHPLGCTGAKLTLSLIHEMKRR--------------- 367 (391)
T ss_pred CEEEeC-------CHHHHHHHHHHHHcCCCCCCCCCCCChHHhCCcHHHHHHHHHHHHHHHHHhc---------------
Confidence 999977 6676666654 4553 35789999999999999999999999999999862
Q ss_pred CcccccccccccCccEEEEEcccccCeeeEEEEeec
Q 012221 431 EFDTVANKKQQHEVNVAISNSFGFGGHNSVVAFSAF 466 (468)
Q Consensus 431 ~~~~~~~~~~~~~~~~~l~~s~g~gG~n~~~vl~~~ 466 (468)
+.++++.+..+-||...++||++.
T Consensus 368 ------------~~~~g~~~~c~~gg~g~a~~~e~~ 391 (391)
T PRK07661 368 ------------NEQFGIVTMCIGGGMGAAGVFELL 391 (391)
T ss_pred ------------CCCeEEEEEccccChhhEEEEEeC
Confidence 134778888888899999999863
|
|
| >PLN02287 3-ketoacyl-CoA thiolase | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.7e-24 Score=219.24 Aligned_cols=275 Identities=17% Similarity=0.265 Sum_probs=194.4
Q ss_pred HHHHHHHHHHHHHHHcCCCCccccccccccceEEEeecCCCccchHHHHHHHHHhCCCCcCCcCcchhhhhhhHHHHhhh
Q 012221 126 CLRYCIVAGKKALEDADLGADISKKIDKERAGVLVGTGMGGLTVFSDGVQALIEKGHRKITPFFIPYAITNMGSALLAID 205 (468)
Q Consensus 126 ~~~l~l~a~~~AL~dAgl~~~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~ia~~ 205 (468)
...|+.+|+++||+|+|+ +++++| +|++|+....... ....+..++..
T Consensus 71 ~~eLa~eA~~~AL~dAgl---~~~dID----~vv~G~~~~~~~~-------------------------~~~~~r~~a~~ 118 (452)
T PLN02287 71 PDDLLAPVLKAVVEKTGL---NPSEVG----DIVVGTVLAPGSQ-------------------------RANECRMAAFY 118 (452)
T ss_pred HHHHHHHHHHHHHHHcCC---CHHHCC----EEEEEeecCcccc-------------------------cchHHHHHHHH
Confidence 367899999999999999 667787 6888865322110 00112345566
Q ss_pred hCCCC--cceeecccChHHHHHHHHHHHHHHhCCCCEEEEEeeccccc-hhhh--------------------hHhhhcc
Q 012221 206 LGFMG--PNYSISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAII-PIGL--------------------GGFVACR 262 (468)
Q Consensus 206 lgl~G--p~~~v~~acas~l~Al~~A~~~I~~G~~d~~lvgG~e~~~~-p~~~--------------------~~~~~~~ 262 (468)
+|+.. |.++|+.+|+||+.|+..|+++|++|.+|++||+|+|.+.. |..+ .+....+
T Consensus 119 ~Gl~~~~pa~~V~~~CaSG~~Ai~~Aa~~I~sG~~dvvLv~GvE~mS~~p~~~~~~~~~~~~~~~~~~~~~~~~g~~a~~ 198 (452)
T PLN02287 119 AGFPETVPVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGVESMTTNPMAWEGGVNPRVESFSQAQDCLLPMGITSEN 198 (452)
T ss_pred CCCCCCcceEEEeccCchHHHHHHHHHHHHHcCCCCeEEEEeEEecCCCchhhccccCchhhccccccccCcCHHHHHHH
Confidence 78864 88999999999999999999999999999999999997432 1000 0000000
Q ss_pred ccccCC------------------CCCCC-C------------------------------------------CCC-CCC
Q 012221 263 ALSQRN------------------DDPQT-A------------------------------------------SRP-WDK 280 (468)
Q Consensus 263 ~l~~~~------------------~~~~~-~------------------------------------------~rp-fd~ 280 (468)
.+.+.+ .+|.. . .+| |+.
T Consensus 199 y~~~yGitrE~la~vAvksh~nAa~np~ag~f~~ei~pv~~~~~~~~~~~~~~~~~~~De~~r~~~~~e~l~~l~~v~~~ 278 (452)
T PLN02287 199 VAERFGVTREEQDQAAVESHRKAAAATASGKFKDEIVPVHTKIVDPKTGEEKPIVISVDDGIRPNTTLADLAKLKPVFKK 278 (452)
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHhhhhcCCcccceeeeeccccccccCCccceeecccCCCCCCCCHHHHhcCCCccCC
Confidence 000000 01110 0 011 110
Q ss_pred -----CCCCeeecceeEEEEecchhHHHhcCCceEEEEEEEEEcCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCcCE
Q 012221 281 -----DRDGFVMGEGAGVLVMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAGVSPEEVNY 355 (468)
Q Consensus 281 -----~~~G~v~gEGaaavvL~~~~~A~~~g~~i~a~i~g~~~~~d~~~~~~~~~~~~~~~~~i~~al~~Agl~~~dId~ 355 (468)
..+...++|||+++||++++.|++++.+|++++.+++... ..|...+.+...+++++|++|||+|+|||+
T Consensus 279 ~g~lt~~~~s~~sDGAaalvl~see~A~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~A~~~al~~Agl~~~DID~ 353 (452)
T PLN02287 279 NGTTTAGNSSQVSDGAGAVLLMKRSVAMQKGLPILGVFRSFAAVG-----VDPAVMGIGPAVAIPAAVKAAGLELDDIDL 353 (452)
T ss_pred CCCEeccccCCcCCceEEEEEeeHHHHHHCCCCeEEEEEEEeecc-----CCCccchHHHHHHHHHHHHHcCCCHHHCCE
Confidence 0244458999999999999999999999999999987543 234445566789999999999999999999
Q ss_pred EEEccCCCccCCHHHHHHHHHHhcc-CCCceeeecccccCccccchhHHHHHHHHHHHhcCCcCCCCCCCCCCCCCCccc
Q 012221 356 INAHATSTLAGDLAEINAIKKVFKN-TTGIKINATKSMIGHCLGAAGGLEAIATVKAITTGWLHPSINQFNPEPSVEFDT 434 (468)
Q Consensus 356 v~~h~~gt~~~D~~E~~al~~~f~~-~~~~~v~s~k~~~Gh~~~AsG~~~l~~~~~~l~~~~~pp~~~~~~~~~~~~~~~ 434 (468)
+|.|..++. .|+..++.+ +- ..++++++++..+||++||+|+.+++.+++||++.-
T Consensus 354 ~Ei~daFa~----~~l~~~e~l-G~~~~pvN~sGG~la~GHp~gAsG~~~v~~l~~qL~~~~------------------ 410 (452)
T PLN02287 354 FEINEAFAS----QFVYCCKKL-GLDPEKVNVNGGAIALGHPLGATGARCVATLLHEMKRRG------------------ 410 (452)
T ss_pred EEecchHHH----HHHHHHHHc-CCCccccCCCCcHHhccCcHHHHHHHHHHHHHHHHHhcC------------------
Confidence 999966554 333333332 32 357899999999999999999999999999998620
Q ss_pred ccccccccCccEEEEEcccccCeeeEEEEeecC
Q 012221 435 VANKKQQHEVNVAISNSFGFGGHNSVVAFSAFK 467 (468)
Q Consensus 435 ~~~~~~~~~~~~~l~~s~g~gG~n~~~vl~~~~ 467 (468)
..-++++.....-||+..++||++.+
T Consensus 411 -------~~~~~gl~~~c~ggG~g~a~~ie~~~ 436 (452)
T PLN02287 411 -------KDCRFGVVSMCIGTGMGAAAVFERGD 436 (452)
T ss_pred -------CCCCeeEEEEccccCceeEEEEEecC
Confidence 00256788888888999999999864
|
|
| >PF02801 Ketoacyl-synt_C: Beta-ketoacyl synthase, C-terminal domain; InterPro: IPR014031 Beta-ketoacyl-ACP synthase 2 | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.6e-26 Score=192.89 Aligned_cols=115 Identities=36% Similarity=0.514 Sum_probs=98.0
Q ss_pred EEEEEEEEEcCCC-CCCCCCCCChHHHHHHHHHHHHHcCCCCCCcCEEEEccCCCccCCHHHHHHHHHHhccC---CCce
Q 012221 310 IAEYLGGAVNCDA-YHMTDPRADGLGVSSCIESSLEDAGVSPEEVNYINAHATSTLAGDLAEINAIKKVFKNT---TGIK 385 (468)
Q Consensus 310 ~a~i~g~~~~~d~-~~~~~~~~~~~~~~~~i~~al~~Agl~~~dId~v~~h~~gt~~~D~~E~~al~~~f~~~---~~~~ 385 (468)
|++|+|+++++|+ .+...+.|++.++.++|+++|++++++|+|||||++||+||+.+|..|.++|.++|+.. .+++
T Consensus 1 ya~i~g~~~~~dg~~~~~~~~p~~~~~~~~i~~al~~agi~~~~I~~i~~hg~Gt~~~D~~E~~ai~~~~~~~~~~~~~~ 80 (119)
T PF02801_consen 1 YAVIRGYGVNSDGARSSSLTAPNGAALARAIRRALADAGISPEDIDYIEAHGTGTPLGDAAEAEAIARVFGDSARQQPVP 80 (119)
T ss_dssp SEEEEEEEEEE-SSSTSSSSSTTHHHHHHHHHHHHHHHTS-GGGEEEEE----SSHHHHHHHHHHHHHHHGGGGGTSTSE
T ss_pred CEEEEEEEEECCCCCCCCCcCcCHHHHHHHHHHHHhhhccccccceeeeeeccccccchhhhhhhhhhhhcccccccccc
Confidence 6899999999999 78888888999999999999999999999999999999999999999999999999983 3599
Q ss_pred eeecccccCccccchhHHHHHHHHHHHhcCCcCCCCCCC
Q 012221 386 INATKSMIGHCLGAAGGLEAIATVKAITTGWLHPSINQF 424 (468)
Q Consensus 386 v~s~k~~~Gh~~~AsG~~~l~~~~~~l~~~~~pp~~~~~ 424 (468)
|++.|+++||+++|||++++++++++|++++|||++|++
T Consensus 81 v~s~K~~~Gh~~~asG~~~l~~~~l~l~~~~ipp~~n~~ 119 (119)
T PF02801_consen 81 VGSVKSNIGHTEAASGLLSLAKALLALEHGTIPPTINFE 119 (119)
T ss_dssp EE-THHHH-B-GGGHHHHHHHHHHHHHHHTEE--BTT-S
T ss_pred eeccccccccccccchHHHHHHHHHHHhcCCCCCCcCCC
Confidence 999999999999999999999999999999999999975
|
3.1.41 from EC (KAS) [] is the enzyme that catalyzes the condensation of malonyl-ACP with the growing fatty acid chain. It is found as a component of a number of enzymatic systems, including fatty acid synthetase (FAS), which catalyzes the formation of long-chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH; the multi-functional 6-methysalicylic acid synthase (MSAS) from Penicillium patulum [], which is involved in the biosynthesis of a polyketide antibiotic; polyketide antibiotic synthase enzyme systems; Emericella nidulans multifunctional protein Wa, which is involved in the biosynthesis of conidial green pigment; Rhizobium nodulation protein nodE, which probably acts as a beta-ketoacyl synthase in the synthesis of the nodulation Nod factor fatty acyl chain; and yeast mitochondrial protein CEM1. The condensation reaction is a two step process, first the acyl component of an activated acyl primer is transferred to a cysteine residue of the enzyme and is then condensed with an activated malonyl donor with the concomitant release of carbon dioxide. This entry represents the C-terminal domain of beta-ketoacyl-ACP synthases. The active site is contained in a cleft betweeen N- and C-terminal domains, with residues from both domains contributing to substrate binding and catalysis [].; PDB: 2UV8_B 3HMJ_A 2VKZ_C 4EWG_A 1TQY_H 1E5M_A 1J3N_B 2VZ8_A 2VZ9_B 3O04_A .... |
| >PRK08256 lipid-transfer protein; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.8e-24 Score=216.36 Aligned_cols=280 Identities=21% Similarity=0.280 Sum_probs=187.0
Q ss_pred HHHHHHHHHHHHHHHcCCCCccccccccccceEEEeecCCCccchHHHHHHHHHhCCCCcCCcCcchhhhhhhHHHHhhh
Q 012221 126 CLRYCIVAGKKALEDADLGADISKKIDKERAGVLVGTGMGGLTVFSDGVQALIEKGHRKITPFFIPYAITNMGSALLAID 205 (468)
Q Consensus 126 ~~~l~l~a~~~AL~dAgl~~~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~ia~~ 205 (468)
..+|+.+++++||+|+|+ +++++| ++++|+..+.... ...+...
T Consensus 22 ~~~La~~A~~~Al~dAGl---~~~dID----~~~~g~~~~~~~~-----------------------------~~~~~~~ 65 (391)
T PRK08256 22 YPDMAAEAGRAALADAGI---DYDAVQ----QAYVGYVYGDSTS-----------------------------GQRALYE 65 (391)
T ss_pred HHHHHHHHHHHHHHHcCC---ChHHCC----eeEEEEEeCCcch-----------------------------hHHHHHH
Confidence 568999999999999999 556676 3555543221100 0123446
Q ss_pred hCCCC-cceeecccChHHHHHHHHHHHHHHhCCCCEEEEEeeccccc-hhh---------hhHhh-------h-------
Q 012221 206 LGFMG-PNYSISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAII-PIG---------LGGFV-------A------- 260 (468)
Q Consensus 206 lgl~G-p~~~v~~acas~l~Al~~A~~~I~~G~~d~~lvgG~e~~~~-p~~---------~~~~~-------~------- 260 (468)
+|+++ |.++|+++|+|++.||..|+++|++|++|++||+|+|.... +.. +..+. .
T Consensus 66 lGl~~~~~~~v~~~caSg~~ai~~A~~~I~sG~~d~vLv~g~e~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (391)
T PRK08256 66 VGMTGIPIVNVNNNCSTGSTALFLARQAVRSGAADCALALGFEQMQPGALGSVWDDRPSPLERFDKALAELQGFDPAPPA 145 (391)
T ss_pred cCCCCCCCcccccccHHHHHHHHHHHHHHHCCCCCEEEEEEEeeccccccccccccccchhhhhhhhhhhhcccccCCcc
Confidence 89988 99999999999999999999999999999999999997421 110 00000 0
Q ss_pred ---cc-----ccccC------------------CCCCCCCCC-CCC--------------CCCCCeeecceeEEEEecch
Q 012221 261 ---CR-----ALSQR------------------NDDPQTASR-PWD--------------KDRDGFVMGEGAGVLVMESL 299 (468)
Q Consensus 261 ---~~-----~l~~~------------------~~~~~~~~r-pfd--------------~~~~G~v~gEGaaavvL~~~ 299 (468)
+. .+.+. ..+|....| |.+ ..-|...++|||+++||.++
T Consensus 146 ~~~~a~~a~~y~~~~G~t~e~~a~vav~~~~~A~~np~A~~~~~~t~e~~~~s~~i~~Pl~~~d~~~~~DGAaA~il~s~ 225 (391)
T PRK08256 146 LRMFGGAGREHMEKYGTTAETFAKIGVKARRHAANNPYAQFRDEYTLEDVLASPMIWGPLTRLQCCPPTCGAAAAIVCSE 225 (391)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhhhcCChhhcCCCCCHHHHhcCCcccCCCcHhhcCCCCCCeEEEEEecH
Confidence 00 00000 002211110 110 01234457999999999999
Q ss_pred hHHHhcCCceEEEEEEEEEcCCCCCCCCC-C---C-ChHHHHHHHHHHHHHcCCCCCCcCEEEEccCCCccCCHHHHHHH
Q 012221 300 EHAMKRGAPIIAEYLGGAVNCDAYHMTDP-R---A-DGLGVSSCIESSLEDAGVSPEEVNYINAHATSTLAGDLAEINAI 374 (468)
Q Consensus 300 ~~A~~~g~~i~a~i~g~~~~~d~~~~~~~-~---~-~~~~~~~~i~~al~~Agl~~~dId~v~~h~~gt~~~D~~E~~al 374 (468)
+.|++.+.+++++|+|++...+....... + . .......+++++|+++|++++|||++|+|.+++. .|+..+
T Consensus 226 ~~a~~~~~~~~v~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~ag~~~~DiD~~ei~d~f~~----~~l~~l 301 (391)
T PRK08256 226 EFARKHGLDRAVEIVAQAMTTDTPSTFDGRSMIDLVGYDMTRAAAQQVYEQAGIGPEDIDVVELHDCFSA----NELLTY 301 (391)
T ss_pred HHHHhcCCCCCEEEEEEEEeccccccccccccccccccHHHHHHHHHHHHHcCCCHHHCCEEeeccCCcH----HHHHHH
Confidence 99998876778999999887654322111 1 1 1224567999999999999999999999999986 444444
Q ss_pred HHH-hcc---------------CC--CceeeecccccCccccchhHHHHHHHHHHHhcCCcCCCCCCCCCCCCCCccccc
Q 012221 375 KKV-FKN---------------TT--GIKINATKSMIGHCLGAAGGLEAIATVKAITTGWLHPSINQFNPEPSVEFDTVA 436 (468)
Q Consensus 375 ~~~-f~~---------------~~--~~~v~s~k~~~Gh~~~AsG~~~l~~~~~~l~~~~~pp~~~~~~~~~~~~~~~~~ 436 (468)
+.+ |.. .. +++.+++-...||+.||+|+.+++++++||+.+ .
T Consensus 302 e~lg~~~~Ge~~~~~~~G~~~~~G~~pvN~~GG~ls~Ghp~gasG~~~~~e~~~QL~g~--------------------a 361 (391)
T PRK08256 302 EALGLCPEGEAEKFIDDGDNTYGGRWVVNPSGGLLSKGHPLGATGLAQCAELTWQLRGT--------------------A 361 (391)
T ss_pred HHcCCCCCCchHHHHHCCCccCCCCeeeCCCCccccCCCCccHHHHHHHHHHHHHhcCC--------------------c
Confidence 443 111 12 445555555569999999999999999999874 1
Q ss_pred ccccccCccEEEEEcccccCeeeEEEEee
Q 012221 437 NKKQQHEVNVAISNSFGFGGHNSVVAFSA 465 (468)
Q Consensus 437 ~~~~~~~~~~~l~~s~g~gG~n~~~vl~~ 465 (468)
...|..+.+++++++.|.+.++...|+++
T Consensus 362 g~~Qv~~~~~~l~~~~G~~~~~~~~v~~~ 390 (391)
T PRK08256 362 GARQVEGARLALQHNLGLGGACVVTLYQR 390 (391)
T ss_pred CCCcCCccceEEEeccccceeEEEEEEec
Confidence 22333456789999999655555556654
|
|
| >PRK08131 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.5e-24 Score=214.70 Aligned_cols=271 Identities=20% Similarity=0.265 Sum_probs=185.1
Q ss_pred HHHHHHHHHHHHHHcCCCCccccccccccceEEEeecCCCccchHHHHHHHHHhCCCCcCCcCcchhhhhhhHHHHhhhh
Q 012221 127 LRYCIVAGKKALEDADLGADISKKIDKERAGVLVGTGMGGLTVFSDGVQALIEKGHRKITPFFIPYAITNMGSALLAIDL 206 (468)
Q Consensus 127 ~~l~l~a~~~AL~dAgl~~~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~ia~~l 206 (468)
..|+.++.++||+|+|+ ++.++| .+++|+...+... -.| ++..++...
T Consensus 27 ~eL~~~a~~~al~~agi---~~~~Id----~v~~G~~~~~~~~------------------------~~~-~ar~~~~~~ 74 (401)
T PRK08131 27 DDLAATVIRRLLEKSGF---PGDDIE----DVILGCTNQAGED------------------------SRN-VARNALLLA 74 (401)
T ss_pred HHHHHHHHHHHHHHcCC---CHHHCC----EEEEEeccccccc------------------------ccc-HHHHHHHhc
Confidence 67899999999999999 667777 6888875321100 011 133466667
Q ss_pred CCC--CcceeecccChHHHHHHHHHHHHHHhCCCCEEEEEeeccccc-hh-----------h---hhH------------
Q 012221 207 GFM--GPNYSISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAII-PI-----------G---LGG------------ 257 (468)
Q Consensus 207 gl~--Gp~~~v~~acas~l~Al~~A~~~I~~G~~d~~lvgG~e~~~~-p~-----------~---~~~------------ 257 (468)
|+. -|.++|+++|+||+.|+..|+++|++|++|++||||+|++.. |. . +..
T Consensus 75 Glp~~~p~~tV~~~CaSG~~Ai~~A~~~I~sG~~dvvlagG~Esms~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (401)
T PRK08131 75 GLPVTVPGQTVNRLCASGLAAVIDAARAITCGEGDLYLAGGVESMSRAPFVMGKAESAFSRDAKVFDTTIGARFPNPKIV 154 (401)
T ss_pred CCCCCCceeeeechhhhHHHHHHHHHHHHHCCCCCEEEEEEecCCCCCcccccccccccccCcchhhhhhcccccCcccc
Confidence 775 489999999999999999999999999999999999997532 11 0 000
Q ss_pred --hhh--ccc-----cccCC---------------------CCC--CCCCCCC-------------CC------------
Q 012221 258 --FVA--CRA-----LSQRN---------------------DDP--QTASRPW-------------DK------------ 280 (468)
Q Consensus 258 --~~~--~~~-----l~~~~---------------------~~~--~~~~rpf-------------d~------------ 280 (468)
+.. ++. ..+.+ .++ .....|. +.
T Consensus 155 ~~~a~~~mg~~ae~~~~~ygitre~~d~vA~~S~~~~~~a~~~~~~~~~i~pi~v~~~~~~~~~~v~~De~~r~~~~~e~ 234 (401)
T PRK08131 155 AQYGNDSMPETGDNVAAEFGISREDADRFAAQSQAKYQAAKEEGFFADEITPIEVPQGRKLPPKLVAEDEHPRPSSTVEA 234 (401)
T ss_pred cccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhCCCCCCceeeEEeccccCCCceEEecCCCCCCCCCHHH
Confidence 000 000 00000 000 0000011 10
Q ss_pred --------C------CCCeeecceeEEEEecchhHHHhcCCceEEEEEEEEEcCCCCCCCCCCCChHHHHHHHHHHHHHc
Q 012221 281 --------D------RDGFVMGEGAGVLVMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDA 346 (468)
Q Consensus 281 --------~------~~G~v~gEGaaavvL~~~~~A~~~g~~i~a~i~g~~~~~d~~~~~~~~~~~~~~~~~i~~al~~A 346 (468)
+ .|...++|||+++||++++.|++++.+++++|+|++...+. |...+.+...+++++|+++
T Consensus 235 L~~l~p~f~~g~lt~~~~s~~~DGAaa~vl~s~~~a~~~~~~p~~~i~g~~~~~~~-----~~~~~~~~~~a~~~a~~~a 309 (401)
T PRK08131 235 LTKLKPLFEGGVVTAGNASGINDGAAALLIGSRAAGEKYGLKPMARILSSAAAGVE-----PRIMGIGPVEAIKKALARA 309 (401)
T ss_pred HhcCCCCCCCCCccCCcCCCCCCceEEEEEeeHHHHHHcCCCceEEEEEEEEeccC-----CccccchHHHHHHHHHHHc
Confidence 0 14455899999999999999999999999999999988642 3333456688999999999
Q ss_pred CCCCCCcCEEEEccCCCccCCHHHHHHHHHHhc---cCCCceeeecccccCccccchhHHHHHHHHHHHhcCCcCCCCCC
Q 012221 347 GVSPEEVNYINAHATSTLAGDLAEINAIKKVFK---NTTGIKINATKSMIGHCLGAAGGLEAIATVKAITTGWLHPSINQ 423 (468)
Q Consensus 347 gl~~~dId~v~~h~~gt~~~D~~E~~al~~~f~---~~~~~~v~s~k~~~Gh~~~AsG~~~l~~~~~~l~~~~~pp~~~~ 423 (468)
||+|+|||++|.|..++.. |+..++. ++ +..+++.+++...+|||.||+|+.+++++++||+..-
T Consensus 310 gl~~~did~~ei~d~Fa~~----~l~~~e~-lg~~~~~~~vN~~GG~la~GhP~gAtG~~~~~el~~qL~~~~------- 377 (401)
T PRK08131 310 GLTLDDMDIIEINEAFASQ----VLGCLKG-LGVDFDDPRVNPNGGAIAVGHPLGASGARLALTAARELQRRG------- 377 (401)
T ss_pred CCCHHHCCeehhccHHHHH----HHHHHHH-cCCCCCCCCccCCccHHhcCCchhhhHHHHHHHHHHHHHhcC-------
Confidence 9999999999999777652 3332222 22 1234555555557899999999999999999998630
Q ss_pred CCCCCCCCcccccccccccCccEEEEEcccccCeeeEEEEeec
Q 012221 424 FNPEPSVEFDTVANKKQQHEVNVAISNSFGFGGHNSVVAFSAF 466 (468)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~l~~s~g~gG~n~~~vl~~~ 466 (468)
.+++++....-||+..++||++.
T Consensus 378 --------------------~~~~~~~~~~ggg~g~a~i~e~~ 400 (401)
T PRK08131 378 --------------------KRYAVVSLCIGVGQGLAMVIERV 400 (401)
T ss_pred --------------------CCceEEEEEecCChhhEEEEEec
Confidence 02334444455677788998874
|
|
| >PRK09050 beta-ketoadipyl CoA thiolase; Validated | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.2e-24 Score=214.13 Aligned_cols=269 Identities=20% Similarity=0.268 Sum_probs=191.9
Q ss_pred HHHHHHHHHHHHHH-HcCCCCccccccccccceEEEeecCCCccchHHHHHHHHHhCCCCcCCcCcchhhhhhhHHHHhh
Q 012221 126 CLRYCIVAGKKALE-DADLGADISKKIDKERAGVLVGTGMGGLTVFSDGVQALIEKGHRKITPFFIPYAITNMGSALLAI 204 (468)
Q Consensus 126 ~~~l~l~a~~~AL~-dAgl~~~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~ia~ 204 (468)
...|+.++++++|+ ++|+ +++++| .|++|+...... ....++..++.
T Consensus 26 ~~~L~~~a~~~al~~~agi---~~~~Id----~v~~G~~~~~~~-------------------------~~~~~ar~~~~ 73 (401)
T PRK09050 26 ADDLGAVPLKALMARNPGV---DWEAVD----DVIYGCANQAGE-------------------------DNRNVARMSAL 73 (401)
T ss_pred HHHHHHHHHHHHHHhccCC---CHHHCC----EEEEEecccccc-------------------------ccchHHHHHHH
Confidence 36788999999999 5899 666777 588887532100 00113445778
Q ss_pred hhCCC--CcceeecccChHHHHHHHHHHHHHHhCCCCEEEEEeeccccc-hhh-------h-------h-----------
Q 012221 205 DLGFM--GPNYSISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAII-PIG-------L-------G----------- 256 (468)
Q Consensus 205 ~lgl~--Gp~~~v~~acas~l~Al~~A~~~I~~G~~d~~lvgG~e~~~~-p~~-------~-------~----------- 256 (468)
..|+. -|.++|+++|+||+.|+..|+++|++|++|++||+|+|++.. |+. + .
T Consensus 74 ~~Gl~~~vP~~tV~~aCaSG~~Ai~~A~~~I~sG~~dvvlagGvEsmS~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (401)
T PRK09050 74 LAGLPVSVPGTTINRLCGSGMDAVGTAARAIKAGEAELMIAGGVESMSRAPFVMGKADSAFSRQAEIFDTTIGWRFVNPL 153 (401)
T ss_pred HcCCCCCCceEEEecccccHHHHHHHHHHHHHCCCCCEEEEecccccccCcccccchhhhcccCcccccccccccccCCc
Confidence 88983 499999999999999999999999999999999999998532 210 0 0
Q ss_pred --H-hh-------------hccccccCC----------------CC-----------------------CCCCCC-----
Q 012221 257 --G-FV-------------ACRALSQRN----------------DD-----------------------PQTASR----- 276 (468)
Q Consensus 257 --~-~~-------------~~~~l~~~~----------------~~-----------------------~~~~~r----- 276 (468)
. |. +.+ +++.. .+ ++...|
T Consensus 154 ~~~~~~~~~Mg~~ae~~a~~~g-isre~~D~~A~~S~k~a~~A~~ng~~~~ei~p~~~~~~~~~~~~~~~da~~r~~~t~ 232 (401)
T PRK09050 154 MKAQYGVDSMPETAENVAEDYN-ISRADQDAFALRSQQRAAAAQAAGFLAEEIVPVTIPQKKGDPVVVDRDEHPRPETTL 232 (401)
T ss_pred cccccccccHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHHHHHHHcCCCcceeeeeeeccCCCCceeeCCCCCCCCCCCH
Confidence 0 00 000 00000 01 122222
Q ss_pred -------C-CCC-----CCCCeeecceeEEEEecchhHHHhcCCceEEEEEEEEEcCCCCCCCCCCCChHHHHHHHHHHH
Q 012221 277 -------P-WDK-----DRDGFVMGEGAGVLVMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSL 343 (468)
Q Consensus 277 -------p-fd~-----~~~G~v~gEGaaavvL~~~~~A~~~g~~i~a~i~g~~~~~d~~~~~~~~~~~~~~~~~i~~al 343 (468)
| |+. ..|...++|||+++||++++.|+++|.+++++|+|++..... |...+.+...+++++|
T Consensus 233 e~l~~l~~~~~~~g~lt~~n~s~~~DGAaa~vl~s~~~A~~lg~~p~a~I~g~~~~~~~-----~~~~~~~~~~a~~~al 307 (401)
T PRK09050 233 EALAKLKPVFRPDGTVTAGNASGVNDGAAALLLASEAAAKKHGLTPRARILGMATAGVE-----PRIMGIGPAPATRKLL 307 (401)
T ss_pred HHHhcCCCcccCCCEEeCCCcCCCcCceEEEEEecHHHHHHCCCCccEEEEEEEEeccC-----CccccchHHHHHHHHH
Confidence 2 321 123344899999999999999999999999999999987532 2233445678999999
Q ss_pred HHcCCCCCCcCEEEEccCCCccCCHHHHHHHH--HHhcc-CCCceeeecccc--cCccccchhHHHHHHHHHHHhcCCcC
Q 012221 344 EDAGVSPEEVNYINAHATSTLAGDLAEINAIK--KVFKN-TTGIKINATKSM--IGHCLGAAGGLEAIATVKAITTGWLH 418 (468)
Q Consensus 344 ~~Agl~~~dId~v~~h~~gt~~~D~~E~~al~--~~f~~-~~~~~v~s~k~~--~Gh~~~AsG~~~l~~~~~~l~~~~~p 418 (468)
++|||+++|||++|.| |.++...+. +.|+- ....+++..++. +||+.||+|+..++++++||+.+
T Consensus 308 ~~Agl~~~DId~~ei~-------D~f~~~~l~~~e~lg~~~~~~pvN~~GG~la~Ghp~gasG~~~~~e~~~qLr~~--- 377 (401)
T PRK09050 308 ARLGLTIDQFDVIELN-------EAFAAQGLAVLRQLGLADDDARVNPNGGAIALGHPLGMSGARLVLTALHQLERT--- 377 (401)
T ss_pred HHcCCCHHHCCccccC-------cHhHHHHHHHHHHcCCCCCCCCEeCCCchHhcCCchhHHHHHHHHHHHHHHHhc---
Confidence 9999999999999977 555554433 34443 123677777776 79999999999999999999863
Q ss_pred CCCCCCCCCCCCCcccccccccccCccEEEEEcccccCeeeEEEEeec
Q 012221 419 PSINQFNPEPSVEFDTVANKKQQHEVNVAISNSFGFGGHNSVVAFSAF 466 (468)
Q Consensus 419 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~g~gG~n~~~vl~~~ 466 (468)
..++++++...-||...++|++++
T Consensus 378 ------------------------~~~~g~~~~c~~gG~g~a~~~e~~ 401 (401)
T PRK09050 378 ------------------------GGRYALCTMCIGVGQGIALAIERV 401 (401)
T ss_pred ------------------------CCCeEEEEEcccccceeEEEEEeC
Confidence 235678888888899999999863
|
|
| >PRK07851 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.2e-24 Score=217.04 Aligned_cols=271 Identities=18% Similarity=0.274 Sum_probs=193.7
Q ss_pred HHHHHHHHHHHHHHc-CCCCccccccccccceEEEeecCCCccchHHHHHHHHHhCCCCcCCcCcchhhhhhhHHHHhhh
Q 012221 127 LRYCIVAGKKALEDA-DLGADISKKIDKERAGVLVGTGMGGLTVFSDGVQALIEKGHRKITPFFIPYAITNMGSALLAID 205 (468)
Q Consensus 127 ~~l~l~a~~~AL~dA-gl~~~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~ia~~ 205 (468)
..|+.+++++||+|+ |+ ++.++| ++++|+.... ...+ ...+..++..
T Consensus 28 ~eL~~~A~~~AL~da~gl---~~~dID----~vv~g~~~~~----------------------~~~g---~~~~~~~a~~ 75 (406)
T PRK07851 28 DDLAAQMVRAALDKVPAL---DPTDID----DLMLGCGLPG----------------------GEQG---FNMARVVAVL 75 (406)
T ss_pred HHHHHHHHHHHHHhccCC---CHHHCC----EEEEEccccc----------------------cccc---CCHHHHHHHH
Confidence 678999999999997 99 667787 6787753210 0000 0124567888
Q ss_pred hCCCC-cceeecccChHHHHHHHHHHHHHHhCCCCEEEEEeeccccc-hh------------hhh---------------
Q 012221 206 LGFMG-PNYSISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAII-PI------------GLG--------------- 256 (468)
Q Consensus 206 lgl~G-p~~~v~~acas~l~Al~~A~~~I~~G~~d~~lvgG~e~~~~-p~------------~~~--------------- 256 (468)
+|+++ |.++|+++|+||+.|+..|+++|++|.+|++||+|+|.+.. +. .+.
T Consensus 76 lGl~~~p~~~v~~~caSG~~av~~Aa~~I~sG~~d~vLv~G~e~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (406)
T PRK07851 76 LGYDFLPGTTVNRYCSSSLQTTRMAFHAIKAGEGDVFISAGVETVSRFAKGNSDSLPDTKNPLFAEAQARTAARAEGGAE 155 (406)
T ss_pred cCCCCCCeeeeeccchhHHHHHHHHHHHHHCCCCCEEEEeeEEecccCcccccccccccCchhhhhcccccccccccccc
Confidence 99976 88999999999999999999999999999999999986211 00 000
Q ss_pred Hhhh----------cccc-------------c--------------------cC-CC---C----C-------CCCC---
Q 012221 257 GFVA----------CRAL-------------S--------------------QR-ND---D----P-------QTAS--- 275 (468)
Q Consensus 257 ~~~~----------~~~l-------------~--------------------~~-~~---~----~-------~~~~--- 275 (468)
.+.. .-.| + .+ +. . | +...
T Consensus 156 ~~~~~~g~~~~~~~~~amg~~a~~~~~~yg~~re~~~~~a~~s~~~a~~A~~n~~~a~~~~p~~~p~~~~~~~d~~~r~~ 235 (406)
T PRK07851 156 AWHDPREDGLLPDVYIAMGQTAENVAQLTGISREEQDEWGVRSQNRAEEAIANGFFEREITPVTLPDGTVVSTDDGPRAG 235 (406)
T ss_pred cccccccccccccccccHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHCCCCccceeeeecCCCceeCCCCCccCC
Confidence 0000 0000 0 00 00 0 0 0001
Q ss_pred ---------CCC-CC-----CCCCeeecceeEEEEecchhHHHhcCCceEEEEEEEEEcCCCCCCCCCCCChHHHHHHHH
Q 012221 276 ---------RPW-DK-----DRDGFVMGEGAGVLVMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIE 340 (468)
Q Consensus 276 ---------rpf-d~-----~~~G~v~gEGaaavvL~~~~~A~~~g~~i~a~i~g~~~~~d~~~~~~~~~~~~~~~~~i~ 340 (468)
+|. +. ..|...++||++++||++++.|++++.+++++|+|++...+. |.....+...+++
T Consensus 236 ~t~e~v~~s~~v~~P~~~lt~~d~~~~~DGaaa~vl~s~e~A~~~~~~~~a~I~g~~~~~~~-----~~~~~~~~~~a~~ 310 (406)
T PRK07851 236 TTYEKVSQLKPVFRPDGTVTAGNACPLNDGAAAVVIMSDTKARELGLTPLARIVSTGVSGLS-----PEIMGLGPVEASK 310 (406)
T ss_pred cCHHHHhcCCCccCCCCcEecCcCCccCCceeEEEEccHHHHHHcCCCccEEEEEEEEccCC-----CCccchhHHHHHH
Confidence 111 10 114445799999999999999999999999999999886532 2333445678999
Q ss_pred HHHHHcCCCCCCcCEEEEccCCCccCCHHHHHHHHHHhcc-CCCceeeecccccCccccchhHHHHHHHHHHHhcCCcCC
Q 012221 341 SSLEDAGVSPEEVNYINAHATSTLAGDLAEINAIKKVFKN-TTGIKINATKSMIGHCLGAAGGLEAIATVKAITTGWLHP 419 (468)
Q Consensus 341 ~al~~Agl~~~dId~v~~h~~gt~~~D~~E~~al~~~f~~-~~~~~v~s~k~~~Gh~~~AsG~~~l~~~~~~l~~~~~pp 419 (468)
++|++|||+++|||++|.|.+.+. .|+..++. |+- ..++++++++..+||+.|++|+.+++++++||+++
T Consensus 311 ~al~~Agi~~~did~~ei~d~f~~----~~l~~le~-lg~~~~pvN~~GG~l~~Ghp~gasg~~~~~~~~~qL~~~---- 381 (406)
T PRK07851 311 QALARAGMSIDDIDLVEINEAFAA----QVLPSARE-LGIDEDKLNVSGGAIALGHPFGMTGARITTTLLNNLQTH---- 381 (406)
T ss_pred HHHHHhCCCHHHCCeehhhhHHHH----HHHHHHHH-hCCCccccCCCCChHhhcCcHHHHHHHHHHHHHHHHHhc----
Confidence 999999999999999999866554 23333333 221 24789999999999999999999999999999752
Q ss_pred CCCCCCCCCCCCcccccccccccCccEEEEEcccccCeeeEEEEeec
Q 012221 420 SINQFNPEPSVEFDTVANKKQQHEVNVAISNSFGFGGHNSVVAFSAF 466 (468)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~g~gG~n~~~vl~~~ 466 (468)
+-++.++...+-||+..++||+++
T Consensus 382 -----------------------~~~~g~~~~~~~gg~g~a~~~e~~ 405 (406)
T PRK07851 382 -----------------------DKTFGLETMCVGGGQGMAMVLERL 405 (406)
T ss_pred -----------------------CCCeEEEEEccccChhhEEEEEec
Confidence 125688888889999999999975
|
|
| >PRK06504 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.1e-23 Score=208.25 Aligned_cols=271 Identities=17% Similarity=0.168 Sum_probs=187.7
Q ss_pred HHHHHHHHHHHHHHcCCCCccccccccccceEEEeecCCCccchHHHHHHHHHhCCCCcCCcCcchhhhhhhHHH--Hhh
Q 012221 127 LRYCIVAGKKALEDADLGADISKKIDKERAGVLVGTGMGGLTVFSDGVQALIEKGHRKITPFFIPYAITNMGSAL--LAI 204 (468)
Q Consensus 127 ~~l~l~a~~~AL~dAgl~~~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~--ia~ 204 (468)
..|+.++++++|+++|+ +++++| .+++|+....... + .| ++.. +..
T Consensus 27 ~~L~~~a~~~al~~a~l---~~~~Id----~vi~G~~~~~~~~----------------------~--~~-~ar~~~l~~ 74 (390)
T PRK06504 27 ADLAAQVLDALVDRSGA---DPALIE----DVIMGCVSQVGEQ----------------------A--TN-VARNAVLAS 74 (390)
T ss_pred HHHHHHHHHHHHHHcCC---CHHHCC----EEEEEeccccccc----------------------c--cc-HHHHHHHHc
Confidence 67899999999999999 666777 6888865311000 0 01 1111 222
Q ss_pred hhCCCCcceeecccChHHHHHHHHHHHHHHhCCCCEEEEEeeccccc-hhhhh---------------Hhhhc-c-----
Q 012221 205 DLGFMGPNYSISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAII-PIGLG---------------GFVAC-R----- 262 (468)
Q Consensus 205 ~lgl~Gp~~~v~~acas~l~Al~~A~~~I~~G~~d~~lvgG~e~~~~-p~~~~---------------~~~~~-~----- 262 (468)
-|+..-|.++|+.+|+||+.|+..|++.|++|++|++||||+|++.. |.... .+... .
T Consensus 75 gl~~~vP~~tV~~~CaSG~~Ai~~A~~~I~sG~~dvvLagGvEsmS~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (390)
T PRK06504 75 KLPESVPGTSIDRQCGSSQQALHFAAQAVMSGTMDIVIAAGVESMTRVPMGSPSTLPAKNGLGHYKSPGMEERYPGIQFS 154 (390)
T ss_pred CCCCCCceEEEechhhHHHHHHHHHHHHHHCCCCCEEEEeeeeecCCCccccccccccccccccccccccccccCCCCCC
Confidence 23334599999999999999999999999999999999999997532 21000 00000 0
Q ss_pred ------ccc-cCCC------------------CCC--------------------------------------CCCCCCC
Q 012221 263 ------ALS-QRND------------------DPQ--------------------------------------TASRPWD 279 (468)
Q Consensus 263 ------~l~-~~~~------------------~~~--------------------------------------~~~rpfd 279 (468)
.+. +.+. .+. ...+|..
T Consensus 155 ~~~aae~~a~~ygisre~~d~~A~ksh~~A~~a~~ag~f~~ei~p~~~~~~~~~~~~~~~De~~r~~~t~e~l~~~~~~~ 234 (390)
T PRK06504 155 QFTGAEMMAKKYGLSKDQLDEFALQSHQRAIAATQAGKFKAEIVPLEITRADGSGEMHTVDEGIRFDATLEGIAGVKLIA 234 (390)
T ss_pred HHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHhHHcCCCccccccccccCCCCCceEEccCCCCCCCCCHHHHhcCCCCC
Confidence 000 0000 000 0112331
Q ss_pred C-----CCCCeeecceeEEEEecchhHHHhcCCceEEEEEEEEEcCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCcC
Q 012221 280 K-----DRDGFVMGEGAGVLVMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAGVSPEEVN 354 (468)
Q Consensus 280 ~-----~~~G~v~gEGaaavvL~~~~~A~~~g~~i~a~i~g~~~~~d~~~~~~~~~~~~~~~~~i~~al~~Agl~~~dId 354 (468)
. ..|...++|||+++||.+++.|++.+.++.++|.++....+. +.....+...+++++|+++|++|+|||
T Consensus 235 ~~g~lt~~n~s~~~DGAaA~vl~s~~~A~~l~~~p~~~i~~~~~~~~~-----~~~~~~~~~~a~~~a~~~agl~~~Did 309 (390)
T PRK06504 235 EGGRLTAATASQICDGASGVMVVNERGLKALGVKPLARIHHMTVIGGD-----PVIMLEAPLPATERALKKAGMKIDDID 309 (390)
T ss_pred CCCCCcCccCCCCCCceEEEEEecHHHHHHcCCCceEEEEEEEEeecC-----chhhhccHHHHHHHHHHHcCCCHHHCC
Confidence 1 124445889999999999999999888887888887765532 111233456789999999999999999
Q ss_pred EEEEccCCCccCCHHHHHHHHHHhccCCCceeeecccccCccccchhHHHHHHHHHHHhcCCcCCCCCCCCCCCCCCccc
Q 012221 355 YINAHATSTLAGDLAEINAIKKVFKNTTGIKINATKSMIGHCLGAAGGLEAIATVKAITTGWLHPSINQFNPEPSVEFDT 434 (468)
Q Consensus 355 ~v~~h~~gt~~~D~~E~~al~~~f~~~~~~~v~s~k~~~Gh~~~AsG~~~l~~~~~~l~~~~~pp~~~~~~~~~~~~~~~ 434 (468)
++|.|..++. .|+..++.+-=...+++++++...+||+.||+|+.++..++.+|++.
T Consensus 310 ~~Ei~d~Fa~----~~l~~~e~lG~~~~pvN~~GG~la~Ghp~gatG~r~~~~l~~~lr~~------------------- 366 (390)
T PRK06504 310 LYEVNEAFAS----VPLAWLKATGADPERLNVNGGAIALGHPLGASGTKLMTTLVHALKQR------------------- 366 (390)
T ss_pred EEEecccchH----HHHHHHHHhCCCCCCcCCCCcHHhcCCCcchhHHHHHHHHHHHHHhh-------------------
Confidence 9999999886 45544444411234788999999999999999999999999999862
Q ss_pred ccccccccCccEEEEEcccccCeeeEEEEee
Q 012221 435 VANKKQQHEVNVAISNSFGFGGHNSVVAFSA 465 (468)
Q Consensus 435 ~~~~~~~~~~~~~l~~s~g~gG~n~~~vl~~ 465 (468)
+.++++.++.|.||..+++||++
T Consensus 367 --------~~~~gl~~~~~ggg~g~a~ile~ 389 (390)
T PRK06504 367 --------GKRYGLQTMCEGGGMANVTIVER 389 (390)
T ss_pred --------CCCeEEEEEeecccceeEEEEEe
Confidence 23567888887788999999876
|
|
| >TIGR02430 pcaF beta-ketoadipyl CoA thiolase | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.1e-24 Score=214.81 Aligned_cols=269 Identities=21% Similarity=0.269 Sum_probs=192.5
Q ss_pred HHHHHHHHHHHHHH-HcCCCCccccccccccceEEEeecCCCccchHHHHHHHHHhCCCCcCCcCcchhhhhhhHHHHhh
Q 012221 126 CLRYCIVAGKKALE-DADLGADISKKIDKERAGVLVGTGMGGLTVFSDGVQALIEKGHRKITPFFIPYAITNMGSALLAI 204 (468)
Q Consensus 126 ~~~l~l~a~~~AL~-dAgl~~~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~ia~ 204 (468)
...|+.++++++|+ ++|+ +++++| .|++|+...... .....+..++.
T Consensus 25 ~~~L~~~a~~~al~~~a~i---~~~~Id----~v~~G~~~~~~~-------------------------~~~~~ar~~~~ 72 (400)
T TIGR02430 25 ADDLAAVPIKALLARNPQL---DWAAID----DVIYGCANQAGE-------------------------DNRNVARMAAL 72 (400)
T ss_pred HHHHHHHHHHHHHHhccCC---CHHHCC----EEEEEecccccc-------------------------ccccHHHHHHH
Confidence 36788999999999 6899 666777 588886432100 00123455788
Q ss_pred hhCCC--CcceeecccChHHHHHHHHHHHHHHhCCCCEEEEEeeccccc-hhh-------h-------------------
Q 012221 205 DLGFM--GPNYSISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAII-PIG-------L------------------- 255 (468)
Q Consensus 205 ~lgl~--Gp~~~v~~acas~l~Al~~A~~~I~~G~~d~~lvgG~e~~~~-p~~-------~------------------- 255 (468)
.+|+. -|.++|+++|+||+.|+..|++.|++|++|++||||+|++.. |+. +
T Consensus 73 ~~Gl~~~~p~~~V~~~CaSG~~Ai~~a~~~I~sG~~d~~la~G~E~ms~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (400)
T TIGR02430 73 LAGLPVSVPGTTVNRLCGSGLDAIGMAARAIKAGEADLLIAGGVESMSRAPFVMGKADSAFSRSAKIEDTTIGWRFINPL 152 (400)
T ss_pred HcCCCCCCceEEeechhhhHHHHHHHHHHHHHCCCCCEEEEeccccccCCcccccccccccccccccccccccccccCcc
Confidence 89996 399999999999999999999999999999999999998542 210 0
Q ss_pred --hHhh-------------hccc-------------------------------cc---cCC----CCCCCCCC------
Q 012221 256 --GGFV-------------ACRA-------------------------------LS---QRN----DDPQTASR------ 276 (468)
Q Consensus 256 --~~~~-------------~~~~-------------------------------l~---~~~----~~~~~~~r------ 276 (468)
..|. ..+. +. +.+ .+|+...|
T Consensus 153 ~~~~~~~~~M~~~ae~~a~~ygisre~~d~~A~~Sh~~a~~a~~~g~~~~ei~pv~vk~~~~~~~~~n~da~~r~~~t~e 232 (400)
T TIGR02430 153 MKALYGVDSMPETAENVAEEFGISREDQDAFALRSQQRTAAAQASGFFAEEIVPVVIPQKKGEPTVVDQDEHPRPETTLE 232 (400)
T ss_pred cccccccCcHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHcCCCcceEEEEEeccCCCCceeeCCCCccCCCCCHH
Confidence 0000 0000 00 001 12222222
Q ss_pred ------C-CCC-----CCCCeeecceeEEEEecchhHHHhcCCceEEEEEEEEEcCCCCCCCCCCCChHHHHHHHHHHHH
Q 012221 277 ------P-WDK-----DRDGFVMGEGAGVLVMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLE 344 (468)
Q Consensus 277 ------p-fd~-----~~~G~v~gEGaaavvL~~~~~A~~~g~~i~a~i~g~~~~~d~~~~~~~~~~~~~~~~~i~~al~ 344 (468)
| |+. ..|...++|||+++||++++.|+++|.+++++|+|++.... .|...+.+...+++++|+
T Consensus 233 ~l~~~~~v~~p~g~lt~~~~s~~~DGAaa~vl~s~e~A~~~g~~~~~~I~g~~~~~~-----~~~~~~~~~~~a~~~al~ 307 (400)
T TIGR02430 233 GLAKLKPVVRPDGTVTAGNASGVNDGAAALLLASEEAVQRHGLTPRARILAAATAGV-----EPRIMGIGPVPATQKLLA 307 (400)
T ss_pred HHhcCCCcccCCCCEeccccCCcCCceEEEEEecHHHHHHCCCCccEEEEEEEEecC-----CCccccchHHHHHHHHHH
Confidence 1 221 12334489999999999999999999999999999988753 233344567889999999
Q ss_pred HcCCCCCCcCEEEEccCCCccCCHHHH--HHHHHHhcc-CCCceeeecccc--cCccccchhHHHHHHHHHHHhcCCcCC
Q 012221 345 DAGVSPEEVNYINAHATSTLAGDLAEI--NAIKKVFKN-TTGIKINATKSM--IGHCLGAAGGLEAIATVKAITTGWLHP 419 (468)
Q Consensus 345 ~Agl~~~dId~v~~h~~gt~~~D~~E~--~al~~~f~~-~~~~~v~s~k~~--~Gh~~~AsG~~~l~~~~~~l~~~~~pp 419 (468)
++||+|+||||+|.| |.++. ....+.|+- ....+++..|+. +||+.||+|+.+++++++||+..
T Consensus 308 ~Agl~~~DID~~ei~-------D~f~~~~l~~~e~lG~~~~~~pvN~~GG~la~GHp~gasG~~~~~e~~~qLr~~---- 376 (400)
T TIGR02430 308 RAGLSIDQFDVIELN-------EAFAAQALAVLRELGLADDDARVNPNGGAIALGHPLGASGARLVLTALRQLERS---- 376 (400)
T ss_pred HhCCCHHHCCCcccC-------cHHHHHHHHHHHHcCCCCCCCeECCCCchHhccChHHHHHHHHHHHHHHHHHhc----
Confidence 999999999999977 55443 344456664 123677777775 89999999999999999999852
Q ss_pred CCCCCCCCCCCCcccccccccccCccEEEEEcccccCeeeEEEEee
Q 012221 420 SINQFNPEPSVEFDTVANKKQQHEVNVAISNSFGFGGHNSVVAFSA 465 (468)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~g~gG~n~~~vl~~ 465 (468)
..++.++....-||...++||++
T Consensus 377 -----------------------~~~~g~~~~c~~gG~g~a~~~e~ 399 (400)
T TIGR02430 377 -----------------------GGRYALCTMCIGVGQGIALAIER 399 (400)
T ss_pred -----------------------CCCEEEEEEccccChhhEEEEEe
Confidence 13467777777888889999986
|
Members of this family are designated beta-ketoadipyl CoA thiolase, an enzyme that acts at the end of pathways for the degradation of protocatechuate (from benzoate and related compounds) and of phenylacetic acid. |
| >PTZ00455 3-ketoacyl-CoA thiolase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.4e-23 Score=212.32 Aligned_cols=290 Identities=18% Similarity=0.193 Sum_probs=191.0
Q ss_pred HHHHHHHHHHHHHHHcCCCCccccc--cccccceEEEeecCCCccchHHHHHHHHHhCCCCcCCcCcchhhhhhhHHHHh
Q 012221 126 CLRYCIVAGKKALEDADLGADISKK--IDKERAGVLVGTGMGGLTVFSDGVQALIEKGHRKITPFFIPYAITNMGSALLA 203 (468)
Q Consensus 126 ~~~l~l~a~~~AL~dAgl~~~~~~~--~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~ia 203 (468)
...|+.+++++||+|+|+ ++++ +| +|++|+..+....... .........++...
T Consensus 48 ~~eL~~~a~~~al~~agl---~~~d~~ID----~vi~G~~~~~~~~~~~-----------------~~a~~~~~~~gl~~ 103 (438)
T PTZ00455 48 LEELLATAIQGTLENTGL---DGKAALVD----KVVVGNFLGELFSSQG-----------------HLGPAAVGSLGQSG 103 (438)
T ss_pred HHHHHHHHHHHHHHHcCC---CHHHCCcC----EEEEEecccccccccc-----------------chHHHHHHhccCcc
Confidence 367899999999999999 6666 77 6888865322100000 00000000011112
Q ss_pred hhhCCCC-cceeecccChHHHHHHHHHHHHHHhCCCCEEEEEeeccccchh-h-----------------h-----hH-h
Q 012221 204 IDLGFMG-PNYSISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAIIPI-G-----------------L-----GG-F 258 (468)
Q Consensus 204 ~~lgl~G-p~~~v~~acas~l~Al~~A~~~I~~G~~d~~lvgG~e~~~~p~-~-----------------~-----~~-~ 258 (468)
..+|+.+ |.++|+++|+||+.||..|+++|++|++|++||+|+|++.... . + .. |
T Consensus 104 ~~~gl~~~p~~~V~~~caSG~~Ai~~A~~~I~sG~~dvvlv~G~E~ms~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (438)
T PTZ00455 104 ASNALLYKPAMRVEGACASGGLAVQSAWEALLAGTSDIALVVGVEVQTTVSARVGGDYLARAADYRRQRKLDDFTFPCLF 183 (438)
T ss_pred cccccCCCceeEEECcCHHHHHHHHHHHHHHHCCCCCEEEEEEEeecccCcchhhhhhccchhhccccccccCcchHHHH
Confidence 4467655 9999999999999999999999999999999999999742210 0 0 00 1
Q ss_pred hh-ccccccCC-------------------CCCCCCC--CCCC------------------------CCCCCeeecceeE
Q 012221 259 VA-CRALSQRN-------------------DDPQTAS--RPWD------------------------KDRDGFVMGEGAG 292 (468)
Q Consensus 259 ~~-~~~l~~~~-------------------~~~~~~~--rpfd------------------------~~~~G~v~gEGaa 292 (468)
.. ++.+.+.. .+|.... +|.+ ...|...++|||+
T Consensus 184 a~~~~ym~~~ggitrE~la~vAvka~~~a~~nP~A~~~~~~~t~~~~~d~~~~~~e~l~s~~i~~pl~~~d~s~~sDGAa 263 (438)
T PTZ00455 184 AKRMKYIQEHGHFTMEDTARVAAKAYANGNKNPLAHMHTRKLSLEFCTGASDKNPKFLGNETYKPFLRMTDCSQVSDGGA 263 (438)
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHhcCCHhhccCCCCCceeeccccccchhhhcCCcccCcCchhcCCCccccce
Confidence 00 11111111 0232110 1111 1224445799999
Q ss_pred EEEecchhHHHhcCCce----EEEEEEEEEcCCCCCCCCC---CCChHHHHHHHHHHHHHcCCCCCCcCEEEEccCCCcc
Q 012221 293 VLVMESLEHAMKRGAPI----IAEYLGGAVNCDAYHMTDP---RADGLGVSSCIESSLEDAGVSPEEVNYINAHATSTLA 365 (468)
Q Consensus 293 avvL~~~~~A~~~g~~i----~a~i~g~~~~~d~~~~~~~---~~~~~~~~~~i~~al~~Agl~~~dId~v~~h~~gt~~ 365 (468)
++||.+++.|++.+.++ .++|+|++...+.... .| ...+.. ..+++++|+++|++++|||++|+|.+++.
T Consensus 264 A~vl~See~A~~l~~~p~~~~~v~i~g~~~~~~~~~~-~~~~~~~~~~~-~~A~~~a~~~AGl~~~DiD~~Ei~daFa~- 340 (438)
T PTZ00455 264 GLVLASEEGLQKMGLSPNDSRLVEIKSLACASGNLYE-DPPDATRMFTS-RAAAQKALSMAGVKPSDLQVAEVHDCFTI- 340 (438)
T ss_pred EEEEecHHHHHhcCCCCCCCccEEEEEEEEecCCccc-CccccccchHH-HHHHHHHHHHcCCCHHHCcEeeecccChH-
Confidence 99999999999988776 6999999988763321 22 222333 67999999999999999999999999886
Q ss_pred CCHHHHHHHHHHh-cc-----------------CCCceeeecccccCccccchhHHHHHHHHHHHhcCCcCCCCCCCCCC
Q 012221 366 GDLAEINAIKKVF-KN-----------------TTGIKINATKSMIGHCLGAAGGLEAIATVKAITTGWLHPSINQFNPE 427 (468)
Q Consensus 366 ~D~~E~~al~~~f-~~-----------------~~~~~v~s~k~~~Gh~~~AsG~~~l~~~~~~l~~~~~pp~~~~~~~~ 427 (468)
.|+..++.+- .. ..+++++++...+|||.||+|+.+++++++||+..-
T Consensus 341 ---~~l~~~e~lGl~~~G~~~~~~~~G~~~~~G~~pvN~~GG~la~GHP~gAtG~~~v~e~~~QLrg~a----------- 406 (438)
T PTZ00455 341 ---AELLMYEALGIAEYGHAKDLIRNGATALEGRIPVNTGGGLLSFGHPVGATGVKQIMEVYRQMKGQC----------- 406 (438)
T ss_pred ---HHHHHHHHcCCCCCCchHHHHhcCCcccCCCceeeCCCchhhcCCCcchHHHHHHHHHHHHHhhcc-----------
Confidence 4444444331 11 235677777777799999999999999999998631
Q ss_pred CCCCcccccccccccC-ccEEEEEccc-ccCeeeEEEEee
Q 012221 428 PSVEFDTVANKKQQHE-VNVAISNSFG-FGGHNSVVAFSA 465 (468)
Q Consensus 428 ~~~~~~~~~~~~~~~~-~~~~l~~s~g-~gG~n~~~vl~~ 465 (468)
...|..+ .+++++++.| ++.++++.||+.
T Consensus 407 ---------g~~Qv~~~~~~gl~~~~Gg~~~~~~~~vl~~ 437 (438)
T PTZ00455 407 ---------GEYQMKNIPALGATLNMGGDDKTAVSTVLQN 437 (438)
T ss_pred ---------ccCCCCCcccEEEEeccCCCcceEEEEEEec
Confidence 1223333 4788888877 776777777754
|
|
| >PRK06158 thiolase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.6e-23 Score=209.85 Aligned_cols=276 Identities=20% Similarity=0.228 Sum_probs=185.9
Q ss_pred HHHHHHHHHHHHHHHcCCCCccccccccccceEEEeecCCCccchHHHHHHHHHhCCCCcCCcCcchhhhhhhHHHHhhh
Q 012221 126 CLRYCIVAGKKALEDADLGADISKKIDKERAGVLVGTGMGGLTVFSDGVQALIEKGHRKITPFFIPYAITNMGSALLAID 205 (468)
Q Consensus 126 ~~~l~l~a~~~AL~dAgl~~~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~ia~~ 205 (468)
...|+.+|+++||+|||+ +++++| ++++++.... + ....++..
T Consensus 28 ~~eL~~eA~~~Al~dAgl---~~~dID----~iv~~~~~~~-----------------------~-------~~~~la~~ 70 (384)
T PRK06158 28 AMELLAQAAHRALADAGL---TMADVD----GLFTASPDDA-----------------------L-------WGLSVAEY 70 (384)
T ss_pred HHHHHHHHHHHHHHHcCC---CHHHCC----EEEEecCCCC-----------------------C-------cHHHHHHH
Confidence 357899999999999999 667777 6777652100 0 01347777
Q ss_pred hCCCC-cceeecccChHHHHHHHHHHHHHHhCCCCEEEEE-eeccccc---------------hhh------hhHhhhcc
Q 012221 206 LGFMG-PNYSISTACATSNYCFYAAANHIRRGEADLMLAG-GTEAAII---------------PIG------LGGFVACR 262 (468)
Q Consensus 206 lgl~G-p~~~v~~acas~l~Al~~A~~~I~~G~~d~~lvg-G~e~~~~---------------p~~------~~~~~~~~ 262 (468)
+|+++ +.+.+.++|+|+..+|..|+++|++|.+|+|||+ |.+.... |+. +..+...+
T Consensus 71 lGl~~~~~~~~~~g~~s~~~al~~A~~~I~sG~~d~vLV~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~al~a~~ 150 (384)
T PRK06158 71 LGIRPRFVDGTMIGGSSFLAHLLPAALALEAGLCDVALICYGSNQRSAGGKLRSMLDPQPYEAPYKPVNPVSAYALAAAR 150 (384)
T ss_pred cCCCCeeeccccCccHHHHHHHHHHHHHHHcCCCCEEEEeeccccccCcccccccccccchhcccCCCCcHHHHHHHHHH
Confidence 89876 7788899999999999999999999999999985 6653210 000 00100000
Q ss_pred ccccC------------------CCCCCCC----------------CCCCCCCCCCeeecceeEEEEecchhHHHhcCCc
Q 012221 263 ALSQR------------------NDDPQTA----------------SRPWDKDRDGFVMGEGAGVLVMESLEHAMKRGAP 308 (468)
Q Consensus 263 ~l~~~------------------~~~~~~~----------------~rpfd~~~~G~v~gEGaaavvL~~~~~A~~~g~~ 308 (468)
.+.+. ..+|... +.|+.. .+...++||++++||++++.|++.+.+
T Consensus 151 ym~~yG~t~e~~a~vav~~~~~a~~NP~A~~~~~~t~e~vl~s~~ia~Pl~~-~d~~~~~DGAaAvVL~s~e~A~~l~~~ 229 (384)
T PRK06158 151 HMHQYGTTREQLAEVAVAARQWAQLNPEAFMRDPLTIDDVLAARMVSDPLSV-RDCCLVTDGAGAVVMVRADRARDLPRP 229 (384)
T ss_pred HHHHHCcCHHHHHHHHHHHHHHHhcCchhhhCCCCCHHHHhcCCccCCCCch-hhcCCccCCeEEEEEecHHHHhhcCCC
Confidence 00000 0122111 123322 466679999999999999999987766
Q ss_pred eEEEEEEEEEcCCCCCCC-CCCCChHHHHHHHHHHHHHcCCCCCCcCEEEEccCCCccCCHHHHHHHHHH-h--------
Q 012221 309 IIAEYLGGAVNCDAYHMT-DPRADGLGVSSCIESSLEDAGVSPEEVNYINAHATSTLAGDLAEINAIKKV-F-------- 378 (468)
Q Consensus 309 i~a~i~g~~~~~d~~~~~-~~~~~~~~~~~~i~~al~~Agl~~~dId~v~~h~~gt~~~D~~E~~al~~~-f-------- 378 (468)
+ .+|+|++...+..... .++........+++++|++|||+|+|||++|.|++++. .|+..+..+ |
T Consensus 230 ~-v~i~g~~~~~~~~~~~~~~~~~~~~~~~aa~~A~~~AGi~p~DId~~ElyD~Fs~----~~l~~~E~lG~~~~Ge~~~ 304 (384)
T PRK06158 230 P-VYVLGAAAATWHRQISSMPDLTVTAAAESGPRAFAMAGLTPADIDVVELYDAFTI----NTILFLEDLGFCAKGEGGA 304 (384)
T ss_pred c-EEEEEEEEecCCcccccccchhhhHHHHHHHHHHHHcCCCHHHCcEEEecCCchH----HHHHHHHHcCCCCCCcHHH
Confidence 4 6788988877654433 23333455678999999999999999999999999986 344443332 1
Q ss_pred ---cc----CC--CceeeecccccCccccchhHHHHHHHHHHHhcCCcCCCCCCCCCCCCCCcccccccccccCccEEEE
Q 012221 379 ---KN----TT--GIKINATKSMIGHCLGAAGGLEAIATVKAITTGWLHPSINQFNPEPSVEFDTVANKKQQHEVNVAIS 449 (468)
Q Consensus 379 ---~~----~~--~~~v~s~k~~~Gh~~~AsG~~~l~~~~~~l~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 449 (468)
.. .. +++.+++-...||+ ||+|+.+++++++||+.. ....|..+.+++++
T Consensus 305 ~~~~G~~~~~G~~PvN~sGG~ls~Ghp-gatG~~~~~E~~~QLrg~--------------------ag~rQv~~a~~gl~ 363 (384)
T PRK06158 305 FVEGGRIAPGGRLPVNTNGGGLSCVHP-GMYGLFLLIEAVRQLRGE--------------------AGERQVAGAEVALA 363 (384)
T ss_pred HHHCCCCccCCCccccCCChhhcCCCC-chhhHHHHHHHHHHHcCC--------------------CCCCcCCCCCEEEE
Confidence 00 12 34444555555999 999999999999999864 12333445678998
Q ss_pred Eccc-ccCeeeEEEEee
Q 012221 450 NSFG-FGGHNSVVAFSA 465 (468)
Q Consensus 450 ~s~g-~gG~n~~~vl~~ 465 (468)
+++| ++..++.+|+++
T Consensus 364 ~~~Gg~~~~~~~~vl~~ 380 (384)
T PRK06158 364 HGNGGVLSSQATAILGT 380 (384)
T ss_pred ECCCCcccceEEEEEec
Confidence 8877 444555667665
|
|
| >cd00829 SCP-x_thiolase Thiolase domain associated with sterol carrier protein (SCP)-x isoform and related proteins; SCP-2 has multiple roles in intracellular lipid circulation and metabolism | Back alignment and domain information |
|---|
Probab=99.92 E-value=8.5e-24 Score=212.58 Aligned_cols=278 Identities=23% Similarity=0.272 Sum_probs=193.2
Q ss_pred HHHHHHHHHHHHHHHcCCCCccccccccccceEEEeecCCCccchHHHHHHHHHhCCCCcCCcCcchhhhhhhHHHHhhh
Q 012221 126 CLRYCIVAGKKALEDADLGADISKKIDKERAGVLVGTGMGGLTVFSDGVQALIEKGHRKITPFFIPYAITNMGSALLAID 205 (468)
Q Consensus 126 ~~~l~l~a~~~AL~dAgl~~~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~ia~~ 205 (468)
...|+.+|+++||+|+|+ +++++| ++++|+...... ....+..++..
T Consensus 16 ~~eL~~~A~~~Al~dagl---~~~~Id----~vi~g~~~~~~~--------------------------~~~~a~~va~~ 62 (375)
T cd00829 16 PLELAAEAARAALDDAGL---EPADID----AVVVGNAAGGRF--------------------------QSFPGALIAEY 62 (375)
T ss_pred HHHHHHHHHHHHHHHcCC---CHHHCC----EEEEeccccccc--------------------------ccchHHHHHHH
Confidence 468999999999999999 555666 677776432110 11235678888
Q ss_pred hCCC-CcceeecccChHHHHHHHHHHHHHHhCCCCEEEEEeeccccchhhhhH---------hh---hcccc--------
Q 012221 206 LGFM-GPNYSISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAIIPIGLGG---------FV---ACRAL-------- 264 (468)
Q Consensus 206 lgl~-Gp~~~v~~acas~l~Al~~A~~~I~~G~~d~~lvgG~e~~~~p~~~~~---------~~---~~~~l-------- 264 (468)
+|+. .|.++++.+|+|++.+|..|+++|++|++|++|++|+|.......... +. ....+
T Consensus 63 lGl~~~~~~~v~~~c~sg~~al~~Aa~~I~sG~~~~vlv~g~e~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al 142 (375)
T cd00829 63 LGLLGKPATRVEAAGASGSAAVRAAAAAIASGLADVVLVVGAEKMSDVPTGDEAGGRASDLEWEGPEPPGGLTPPALYAL 142 (375)
T ss_pred cCCCCcceeeEeCccHHHHHHHHHHHHHHHhCCCCEEEEEEEeecccCcccchhhccccchhhhhcccccCCChHHHHHH
Confidence 9984 489999999999999999999999999999999999997432110000 00 00000
Q ss_pred ------ccC------------------CCCCCCC----------------CCCCCCCCCCeeecceeEEEEecchhHHHh
Q 012221 265 ------SQR------------------NDDPQTA----------------SRPWDKDRDGFVMGEGAGVLVMESLEHAMK 304 (468)
Q Consensus 265 ------~~~------------------~~~~~~~----------------~rpfd~~~~G~v~gEGaaavvL~~~~~A~~ 304 (468)
.+. ..+|... +.|+. ..+...++||++++||++++.|++
T Consensus 143 ~a~~~~~~~g~t~e~~~~va~~~~~~A~~np~A~~~~~~t~d~~~~~~~i~~pl~-~~~~~~~~DGaaa~vl~s~~~a~~ 221 (375)
T cd00829 143 AARRYMHRYGTTREDLAKVAVKNHRNAARNPYAQFRKPITVEDVLNSRMIADPLR-LLDCCPVSDGAAAVVLASEERARE 221 (375)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHhcCChhhcCCCCCHHHHhcCCcccCCCc-hhhcCCCCCceeEEEEecHHHHhh
Confidence 000 0011110 11222 135567999999999999999998
Q ss_pred cCCceEEEEEEEEEcCCCCCCCCCCC--ChHHHHHHHHHHHHHcCCCCCCcCEEEEccCCCccCCHHHHHHHHHHhccC-
Q 012221 305 RGAPIIAEYLGGAVNCDAYHMTDPRA--DGLGVSSCIESSLEDAGVSPEEVNYINAHATSTLAGDLAEINAIKKVFKNT- 381 (468)
Q Consensus 305 ~g~~i~a~i~g~~~~~d~~~~~~~~~--~~~~~~~~i~~al~~Agl~~~dId~v~~h~~gt~~~D~~E~~al~~~f~~~- 381 (468)
+ .+++++|+|++...+..+...... ...+...+++++|++|||+++|||++|+|++++.. ..+.+++|.-...+.
T Consensus 222 ~-~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~Agl~~~did~~ei~d~F~~~-~l~~~e~lGl~~~g~~ 299 (375)
T cd00829 222 L-TDRPVWILGVGAASDTPSLSERDDFLSLDAARLAARRAYKMAGITPDDIDVAELYDCFTIA-ELLALEDLGFCEKGEG 299 (375)
T ss_pred c-CCCCeEEEEEEEecCCccccccccccccHHHHHHHHHHHHHcCCCHHHCCEEEecCcChHH-HHHHHHHcCCCCCCch
Confidence 8 677899999999988776554432 56778899999999999999999999999999963 333333332111101
Q ss_pred --------------CCceeeecccccCccccchhHHHHHHHHHHHhcCCcCCCCCCCCCCCCCCcccccccccccCccEE
Q 012221 382 --------------TGIKINATKSMIGHCLGAAGGLEAIATVKAITTGWLHPSINQFNPEPSVEFDTVANKKQQHEVNVA 447 (468)
Q Consensus 382 --------------~~~~v~s~k~~~Gh~~~AsG~~~l~~~~~~l~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (468)
.++++++.-..+||+.+++|+..++++++||+... ...|..+.+++
T Consensus 300 ~~~~~~g~~~~~G~~pvN~~GG~la~Ghp~gatG~~~~~e~~~qlrg~a--------------------g~~qv~~~~~~ 359 (375)
T cd00829 300 GKLVREGDTAIGGDLPVNTSGGLLSKGHPLGATGLAQAVEAVRQLRGEA--------------------GARQVPGARVG 359 (375)
T ss_pred HHHHHCCCccCCCCccccCCCchhcCCCCccHHHHHHHHHHHHHhcCCc--------------------ccccCCCccEE
Confidence 14555666666799999999999999999998741 12233356788
Q ss_pred EEEcccccCeee
Q 012221 448 ISNSFGFGGHNS 459 (468)
Q Consensus 448 l~~s~g~gG~n~ 459 (468)
++.+.|-.+++.
T Consensus 360 l~~~~gg~~~~~ 371 (375)
T cd00829 360 LAHNIGGTGSAA 371 (375)
T ss_pred EEecCCCccceE
Confidence 888776444433
|
The N-terminal presequence in the SCP-x isoform represents a peroxisomal 3-ketacyl-Coa thiolase specific for branched-chain acyl CoAs, which is proteolytically cleaved from the sterol carrier protein. |
| >PRK06366 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=8.2e-24 Score=212.11 Aligned_cols=273 Identities=19% Similarity=0.231 Sum_probs=194.7
Q ss_pred HHHHHHHHHHHHHHHcCCCCccccccccccceEEEeecCCCccchHHHHHHHHHhCCCCcCCcCcchhhhhhhHHHHhhh
Q 012221 126 CLRYCIVAGKKALEDADLGADISKKIDKERAGVLVGTGMGGLTVFSDGVQALIEKGHRKITPFFIPYAITNMGSALLAID 205 (468)
Q Consensus 126 ~~~l~l~a~~~AL~dAgl~~~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~ia~~ 205 (468)
...|+.+++++||+|+|+ +++++| +|++|+...... ....+..++..
T Consensus 26 ~~~L~~~a~~~al~dagi---~~~dID----~vi~g~~~~~~~--------------------------~~~~a~~~~~~ 72 (388)
T PRK06366 26 APQLGGAAIKAVIDDAKL---DPALVQ----EVIMGNVIQAGV--------------------------GQNPAGQAAYH 72 (388)
T ss_pred HHHHHHHHHHHHHHHcCC---CHHHCC----EEEEEecCCCCc--------------------------cCcHHHHHHHH
Confidence 467899999999999999 677888 788886432110 00114456778
Q ss_pred hCCCC--cceeecccChHHHHHHHHHHHHHHhCCCCEEEEEeeccccc-hh--------h---h-------hH-hhhc--
Q 012221 206 LGFMG--PNYSISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAII-PI--------G---L-------GG-FVAC-- 261 (468)
Q Consensus 206 lgl~G--p~~~v~~acas~l~Al~~A~~~I~~G~~d~~lvgG~e~~~~-p~--------~---~-------~~-~~~~-- 261 (468)
+|+.. |.++|+++|+||+.|+..|+++|++|++|++||+|+|++.. |. . . .. +...
T Consensus 73 ~Gl~~~~p~~~v~~~caSg~~av~~Aa~~I~sG~~d~vla~G~e~ms~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 152 (388)
T PRK06366 73 AGLPFGVTKYTVNVVCASGMLAVESAAREIMLGERDLVIAGGMENMSNAPFLLPSDLRWGPKHLLHKNYKIDDAMLVDGL 152 (388)
T ss_pred CCCCCCCcceeeechhhHHHHHHHHHHHHHhcCCCCEEEEEeeEccccCcccccccccccccccccccchhhhhhcccCc
Confidence 99964 99999999999999999999999999999999999997431 10 0 0 00 0000
Q ss_pred ---------cccc-----cCC------------------CCCCC-CC---------------------------CCC-CC
Q 012221 262 ---------RALS-----QRN------------------DDPQT-AS---------------------------RPW-DK 280 (468)
Q Consensus 262 ---------~~l~-----~~~------------------~~~~~-~~---------------------------rpf-d~ 280 (468)
.... +.+ .+|.. .. +|. +.
T Consensus 153 ~~~~~~~~mal~A~~~~~~yGitrE~~a~vAv~s~~~A~~np~ag~~~~ei~p~~~~~~d~~~r~~t~e~~~~s~~v~~p 232 (388)
T PRK06366 153 IDAFYFEHMGVSAERTARKYGITREMADEYSVQSYERAIRATESGEFRNEIVPFNDLDRDEGIRKTTMEDLAKLPPAFDK 232 (388)
T ss_pred cccccCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhhHhcCCcccccccccccccccCcccCCHHHHhhCCCccCC
Confidence 0000 000 02221 11 111 10
Q ss_pred -----CCCCeeecceeEEEEecchhHHHhcCCceEEEEEEEEEcCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCcCE
Q 012221 281 -----DRDGFVMGEGAGVLVMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAGVSPEEVNY 355 (468)
Q Consensus 281 -----~~~G~v~gEGaaavvL~~~~~A~~~g~~i~a~i~g~~~~~d~~~~~~~~~~~~~~~~~i~~al~~Agl~~~dId~ 355 (468)
..|...++|||+++||.+++.|++.+.++.++|+|++...... .........+++++|+++||+++|||+
T Consensus 233 ~g~lt~~d~s~~sDGAaAvvl~See~A~~l~~~pv~~I~g~~~~~~~~-----~~~~~~~~~A~~~al~~Agl~~~DiDv 307 (388)
T PRK06366 233 NGILTAGNSAQLSDGGSALVMASEKAINEYGLKPIARITGYESASLDP-----LDFVEAPIPATRKLLEKQNKSIDYYDL 307 (388)
T ss_pred CCCEehhhcCCcccceeEEEEecHHHHHHcCCCcCEEEEEEEEEecCH-----HHhcccHHHHHHHHHHHcCCCHHHcce
Confidence 1123347999999999999999999988888999998876422 111222368999999999999999999
Q ss_pred EEEccCCCccCCHHHHHHHHHHhccCCCceeeecccccCccccchhHHHHHHHHHHHhcCCcCCCCCCCCCCCCCCcccc
Q 012221 356 INAHATSTLAGDLAEINAIKKVFKNTTGIKINATKSMIGHCLGAAGGLEAIATVKAITTGWLHPSINQFNPEPSVEFDTV 435 (468)
Q Consensus 356 v~~h~~gt~~~D~~E~~al~~~f~~~~~~~v~s~k~~~Gh~~~AsG~~~l~~~~~~l~~~~~pp~~~~~~~~~~~~~~~~ 435 (468)
+|+|..++. .|+..++.+-=+.+++|++++.-.+|||+||+|+++++.+++||+.+
T Consensus 308 ~Ei~daFa~----~~l~~le~lgl~g~~vN~~GG~la~GHP~GatG~~~~~~l~~qL~~~-------------------- 363 (388)
T PRK06366 308 VEHNEAFSI----ASIIVRDQLKIDNERFNVNGGAVAIGHPIGNSGSRIIVTLINALKTR-------------------- 363 (388)
T ss_pred eeccchhHH----HHHHHHHHhCCCCCccCCCCchhhhCCCcCCCHHHHHHHHHHHHHhc--------------------
Confidence 999999886 45555554421223788888888889999999999999999999862
Q ss_pred cccccccCccEEEEEcccccCeeeEEEEeecC
Q 012221 436 ANKKQQHEVNVAISNSFGFGGHNSVVAFSAFK 467 (468)
Q Consensus 436 ~~~~~~~~~~~~l~~s~g~gG~n~~~vl~~~~ 467 (468)
..++++++...-||...++||++.+
T Consensus 364 -------~~~~g~~~~c~~gg~g~a~~~e~~~ 388 (388)
T PRK06366 364 -------HMKTGLATLCHGGGGAHTLTLEMVE 388 (388)
T ss_pred -------CCCeEEEEEecccChhhEEEEEecC
Confidence 1356777777888999999998753
|
|
| >PRK08963 fadI 3-ketoacyl-CoA thiolase; Reviewed | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.6e-23 Score=209.76 Aligned_cols=273 Identities=18% Similarity=0.212 Sum_probs=189.7
Q ss_pred HHHHHHHHHHHHHHcCCCCccccccccccceEEEeecCCCccchHHHHHHHHHhCCCCcCCcCcchhhhhhhHHHHhhhh
Q 012221 127 LRYCIVAGKKALEDADLGADISKKIDKERAGVLVGTGMGGLTVFSDGVQALIEKGHRKITPFFIPYAITNMGSALLAIDL 206 (468)
Q Consensus 127 ~~l~l~a~~~AL~dAgl~~~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~ia~~l 206 (468)
..|+.+++++||+++|+ +++++| .|++|+...... + ..++..++...
T Consensus 30 ~eL~~~a~~~al~~agl---~~~~ID----~vi~G~~~~~~~-----------------------~---~~~ar~~a~~a 76 (428)
T PRK08963 30 VDLGKMVVGELLARSEI---DPELIE----QLVFGQVVQMPE-----------------------A---PNIAREIVLGT 76 (428)
T ss_pred HHHHHHHHHHHHHHcCC---CHHHCC----EEEEeccCCCCC-----------------------c---cHHHHHHHHHC
Confidence 67889999999999999 666777 688886431100 0 11244577888
Q ss_pred CCC--CcceeecccChHHHHHHHHHHHHHHhCCCCEEEEEeeccccchhhhh-H--------------hh-------h--
Q 012221 207 GFM--GPNYSISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAIIPIGLG-G--------------FV-------A-- 260 (468)
Q Consensus 207 gl~--Gp~~~v~~acas~l~Al~~A~~~I~~G~~d~~lvgG~e~~~~p~~~~-~--------------~~-------~-- 260 (468)
|+. -|.++|+++|+||+.|+..|+++|++|++|++||||+|++....... . +. .
T Consensus 77 Gl~~~~P~~tV~~aCaSG~~Ai~~Aa~~I~sG~~dvvLvgG~Esms~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (428)
T PRK08963 77 GMNVHTDAYSVSRACATSFQAVANVAESIMAGTIDIGIAGGADSSSVLPIGVSKKLARALVDLNKARTLGQRLKLFSRLR 156 (428)
T ss_pred CCCCCCcceeehhhhHHHHHHHHHHHHHHHCCCCCEEEEecccccCCCccccccccccchhccccccccCcccccccccc
Confidence 996 39999999999999999999999999999999999999753211000 0 00 0
Q ss_pred ----c---ccc------------c-----cCCC------------------C----------------CCC-------CC
Q 012221 261 ----C---RAL------------S-----QRND------------------D----------------PQT-------AS 275 (468)
Q Consensus 261 ----~---~~l------------~-----~~~~------------------~----------------~~~-------~~ 275 (468)
. ..+ . +.+. + |.. ..
T Consensus 157 ~~~~~~~~~~~~~~~~~~~m~~~A~~~~~~ygisre~~~~~avksh~~a~~~~~~g~~~~ei~p~~~~p~a~~~~~D~~~ 236 (428)
T PRK08963 157 LRDLLPVPPAVAEYSTGLRMGDTAEQMAKTYGISREEQDALAHRSHQLAAQAWAEGKLDDEVMTAHVPPYKQPLEEDNNI 236 (428)
T ss_pred hhhccccCcccccccCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHcCCCccceeeEEecCCceeeCCCCCC
Confidence 0 000 0 0000 0 111 01
Q ss_pred C------------C-CCC------CCCCeeecceeEEEEecchhHHHhcCCceEEEEEEEEEcCCCCCCCCCCC-ChHHH
Q 012221 276 R------------P-WDK------DRDGFVMGEGAGVLVMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRA-DGLGV 335 (468)
Q Consensus 276 r------------p-fd~------~~~G~v~gEGaaavvL~~~~~A~~~g~~i~a~i~g~~~~~d~~~~~~~~~-~~~~~ 335 (468)
| | |+. ..|...++|||+++||++++.|++.+.+++++|.|++.... .+.. .....
T Consensus 237 r~~~t~e~~~~~~~v~~p~~g~lt~~~~~~~~DGAaA~vl~see~A~~l~~~p~~~i~g~~~~~~-----~~~~~~~~~~ 311 (428)
T PRK08963 237 RGDSTLEDYAKLRPAFDRKHGTVTAANSTPLTDGAAAVLLMSESRAKALGLTPLGYLRSYAFAAI-----DVWQDMLLGP 311 (428)
T ss_pred CCCCCHHHHhcCCccccCCCCceehhhcCCCCCceEEEEEecHHHHHHcCCCccEEEEEEecccC-----CchhhhhhHH
Confidence 1 1 110 11233479999999999999999999999999999887651 1111 12344
Q ss_pred HHHHHHHHHHcCCCCCCcCEEEEccCCCccCCHHHHHHHH--HHh----c--------cCCCceeeecccccCccccchh
Q 012221 336 SSCIESSLEDAGVSPEEVNYINAHATSTLAGDLAEINAIK--KVF----K--------NTTGIKINATKSMIGHCLGAAG 401 (468)
Q Consensus 336 ~~~i~~al~~Agl~~~dId~v~~h~~gt~~~D~~E~~al~--~~f----~--------~~~~~~v~s~k~~~Gh~~~AsG 401 (468)
..+++++|+++||+++|||++|+|.+++.. ...+++.+. ..+ + +..++++++.-..+||+.||+|
T Consensus 312 ~~a~~~al~~AGl~~~DiD~~Ei~d~Fa~~-~l~~~e~l~~~~~~~~~~g~~~~~G~~~~~pvN~~GG~la~GhP~gasG 390 (428)
T PRK08963 312 AYATPLALERAGLTLADLTLIDMHEAFAAQ-TLANLQMFASERFAREKLGRSQAIGEVDMSKFNVLGGSIAYGHPFAATG 390 (428)
T ss_pred HHHHHHHHHHcCCCHHHCCEEEEccccHHH-HHHHHHHhcCchhhhhcccccccCCCCCCCccCCCCCHHhcCCCccccH
Confidence 678999999999999999999999998852 223333331 000 1 0125677777777799999999
Q ss_pred HHHHHHHHHHHhcCCcCCCCCCCCCCCCCCcccccccccccCccEEEEEcccccCeeeEEEEee
Q 012221 402 GLEAIATVKAITTGWLHPSINQFNPEPSVEFDTVANKKQQHEVNVAISNSFGFGGHNSVVAFSA 465 (468)
Q Consensus 402 ~~~l~~~~~~l~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~g~gG~n~~~vl~~ 465 (468)
+..++++++||+.+ ..+++++...+-||...++||++
T Consensus 391 ~~~~~e~~~qLrg~---------------------------~g~~gl~~~c~ggG~g~a~~ie~ 427 (428)
T PRK08963 391 ARMITQTLHELRRR---------------------------GGGLGLTTACAAGGLGAAMVLEV 427 (428)
T ss_pred HHHHHHHHHHHhhc---------------------------CCCEEEEEEccccChhhEEEEEe
Confidence 99999999999863 12368888888899999999985
|
|
| >PLN02644 acetyl-CoA C-acetyltransferase | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.3e-23 Score=211.06 Aligned_cols=270 Identities=20% Similarity=0.249 Sum_probs=189.4
Q ss_pred HHHHHHHHHHHHHHcCCCCccccccccccceEEEeecCCCccchHHHHHHHHHhCCCCcCCcCcchhhhhhhHHHHhhhh
Q 012221 127 LRYCIVAGKKALEDADLGADISKKIDKERAGVLVGTGMGGLTVFSDGVQALIEKGHRKITPFFIPYAITNMGSALLAIDL 206 (468)
Q Consensus 127 ~~l~l~a~~~AL~dAgl~~~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~ia~~l 206 (468)
..|+.+++++||+|||+ ++.++| +|++|+...... + .+ .+..++..+
T Consensus 26 ~~L~~~a~~~al~dAgl---~~~~ID----~vv~g~~~~~~~-----------------------~--~~-~~~~~~~~~ 72 (394)
T PLN02644 26 TELGSIAIQAALERAGV---DPALVQ----EVFFGNVLSANL-----------------------G--QA-PARQAALGA 72 (394)
T ss_pred HHHHHHHHHHHHHHcCC---CHHHCC----EEEEEecCcCCc-----------------------C--Cc-HHHHHHHhc
Confidence 67899999999999999 667787 688876421100 0 01 133466778
Q ss_pred CCC--CcceeecccChHHHHHHHHHHHHHHhCCCCEEEEEeeccccc-hh---------------h---h--h-------
Q 012221 207 GFM--GPNYSISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAII-PI---------------G---L--G------- 256 (468)
Q Consensus 207 gl~--Gp~~~v~~acas~l~Al~~A~~~I~~G~~d~~lvgG~e~~~~-p~---------------~---~--~------- 256 (468)
|+. -|.++|+.+|+|++.||.+|+++|++|++|++||+|+|.+.. |. . + .
T Consensus 73 Gl~~~~p~~~v~~~caSg~~av~~Aa~~I~sG~~d~vlv~G~E~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (394)
T PLN02644 73 GLPPSTICTTVNKVCASGMKAVMLAAQSIQLGINDVVVAGGMESMSNAPKYLPEARKGSRLGHDTVVDGMLKDGLWDVYN 152 (394)
T ss_pred CCCCCCceEEEeccchHHHHHHHHHHHHHHcCCCCEEEEEeEEecCCCcccccccccccccccchhhhhccccccccccC
Confidence 885 378899999999999999999999999999999999886421 10 0 0 0
Q ss_pred --Hh--hhccccccC--------------------CCCCC---------------C---------------------CCC
Q 012221 257 --GF--VACRALSQR--------------------NDDPQ---------------T---------------------ASR 276 (468)
Q Consensus 257 --~~--~~~~~l~~~--------------------~~~~~---------------~---------------------~~r 276 (468)
.| .....+.+. +.+|. + ..+
T Consensus 153 ~~~~~~~A~~~~~~yG~tre~la~vav~s~~~a~~a~~~~~~~~ei~~~~v~~~~~~~~~~~~~de~~~~~~~~~l~~l~ 232 (394)
T PLN02644 153 DFGMGVCAELCADQYSISREEQDAYAIQSYERAIAAQEAGAFAWEIVPVEVPGGRGRPSVIVDKDEGLGKFDPAKLRKLR 232 (394)
T ss_pred CCcHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhHHcCCCccceeeEEeccCCCCCceEeecCCCcCCCCHHHHhCCC
Confidence 00 000000000 00110 0 001
Q ss_pred CCCC-------CCCCeeecceeEEEEecchhHHHhcCCceEEEEEEEEEcCCCCCCCCCCCChHHHHHHHHHHHHHcCCC
Q 012221 277 PWDK-------DRDGFVMGEGAGVLVMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAGVS 349 (468)
Q Consensus 277 pfd~-------~~~G~v~gEGaaavvL~~~~~A~~~g~~i~a~i~g~~~~~d~~~~~~~~~~~~~~~~~i~~al~~Agl~ 349 (468)
|..+ ..|...++||++++||++++.|++++.+++++|+|++...+... ........+++++|+++|++
T Consensus 233 p~f~~~~g~vt~~~~~~~~DGaaavvl~s~~~A~~~~~~~~a~I~g~~~~~~~~~-----~~~~~~~~a~~~al~~Agi~ 307 (394)
T PLN02644 233 PSFKEDGGSVTAGNASSISDGAAALVLVSGEKALELGLQVIAKIRGYADAAQAPE-----LFTTAPALAIPKALKHAGLE 307 (394)
T ss_pred CcccCCCCcEeccccCCCCcceEEEEeccHHHHHHCCCCeEEEEEEEEEcCCCCc-----ccchhHHHHHHHHHHHcCCC
Confidence 1100 02355579999999999999999999999999999998765321 11223356999999999999
Q ss_pred CCCcCEEEEccCCCccCCHHHHHHHHHHhcc-CCCceeeecccccCccccchhHHHHHHHHHHHhcCCcCCCCCCCCCCC
Q 012221 350 PEEVNYINAHATSTLAGDLAEINAIKKVFKN-TTGIKINATKSMIGHCLGAAGGLEAIATVKAITTGWLHPSINQFNPEP 428 (468)
Q Consensus 350 ~~dId~v~~h~~gt~~~D~~E~~al~~~f~~-~~~~~v~s~k~~~Gh~~~AsG~~~l~~~~~~l~~~~~pp~~~~~~~~~ 428 (468)
|+||||+|+|+.++. ......+.|+- ..++++++++..+||+.||+|+.++++++++|+.+
T Consensus 308 ~~Did~~Ei~d~f~~-----~~l~~~e~lg~~~~~vN~~GG~l~~Ghp~gasG~~~~~~~~~~l~~~------------- 369 (394)
T PLN02644 308 ASQVDYYEINEAFSV-----VALANQKLLGLDPEKVNVHGGAVSLGHPIGCSGARILVTLLGVLRSK------------- 369 (394)
T ss_pred HHHCCEEEeCcHHHH-----HHHHHHHHhCCCccccCCCCChHhhCCCHHHHHHHHHHHHHHHHHhc-------------
Confidence 999999999855542 22223344543 35789999999999999999999999999999863
Q ss_pred CCCcccccccccccCccEEEEEcccccCeeeEEEEeec
Q 012221 429 SVEFDTVANKKQQHEVNVAISNSFGFGGHNSVVAFSAF 466 (468)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~l~~s~g~gG~n~~~vl~~~ 466 (468)
..++++...++-||...++||++.
T Consensus 370 --------------~~~~g~~~~~~~gg~g~a~~~e~~ 393 (394)
T PLN02644 370 --------------NGKYGVAGICNGGGGASAIVVELM 393 (394)
T ss_pred --------------CCCeEEEEEeccCCceeEEEEEec
Confidence 124677777778899999999875
|
|
| >PRK06059 lipid-transfer protein; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.3e-23 Score=210.20 Aligned_cols=283 Identities=19% Similarity=0.211 Sum_probs=190.5
Q ss_pred HHHHHHHHHHHHHHcCCCCccccccccccceEEEeecCCCccchHHHHHHHHHhCCCCcCCcCcchhhhhhhHHHHhhhh
Q 012221 127 LRYCIVAGKKALEDADLGADISKKIDKERAGVLVGTGMGGLTVFSDGVQALIEKGHRKITPFFIPYAITNMGSALLAIDL 206 (468)
Q Consensus 127 ~~l~l~a~~~AL~dAgl~~~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~ia~~l 206 (468)
..|+.+|+++||+|+|+ +++++| .+++++..... ...+..+..++..+
T Consensus 24 ~~La~~A~~~Al~dAgl---~~~dId----~vi~~~~~~~~-------------------------~~~~~~a~~va~~l 71 (399)
T PRK06059 24 VEYGVVAARAALADAGL---DWRDVQ----LVVGADTIRNG-------------------------YPGFVAGATFAQAL 71 (399)
T ss_pred HHHHHHHHHHHHHHcCC---CHHHCC----EEEEEeccCCc-------------------------cCCccHHHHHHHHh
Confidence 67899999999999999 556666 46666532110 00011245688889
Q ss_pred CCCC-cceeecccChHHHHHHHHHHHHHHhCCCCEEEEEeeccccchh--h----------h-----hHhh--------h
Q 012221 207 GFMG-PNYSISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAIIPI--G----------L-----GGFV--------A 260 (468)
Q Consensus 207 gl~G-p~~~v~~acas~l~Al~~A~~~I~~G~~d~~lvgG~e~~~~p~--~----------~-----~~~~--------~ 260 (468)
|+++ |.++++++|+|++.||..|+++|++|++|.+||+|+|...... . + .++. .
T Consensus 72 G~~~~~~~~v~~~Casg~~al~~A~~~I~sG~~~~vLvvg~e~~s~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~al~a 151 (399)
T PRK06059 72 GWNGAPVSSSYAACASGSQALQSARAQILAGLCDVALVVGADTTPKGFFAPVGGERPDDPDWLRFHLIGATNPVYFALLA 151 (399)
T ss_pred CCCCCceecccchhHHHHHHHHHHHHHHHCCCCCEEEEEEEcccCCCCCcccccccccccchhhcccCCCccHHHHHHHH
Confidence 9988 8999999999999999999999999999999999999743210 0 0 0000 0
Q ss_pred ccccccC------------------CCCCCCCCC-CCC--------------CCCCCeeecceeEEEEecchhHHHhc--
Q 012221 261 CRALSQR------------------NDDPQTASR-PWD--------------KDRDGFVMGEGAGVLVMESLEHAMKR-- 305 (468)
Q Consensus 261 ~~~l~~~------------------~~~~~~~~r-pfd--------------~~~~G~v~gEGaaavvL~~~~~A~~~-- 305 (468)
.+.+.+. ..+|+...| |.+ ..-|...++|||+++||.+++.|++.
T Consensus 152 ~~~~~~yg~s~e~~a~v~~~~~~~a~~Np~A~~r~~~t~e~v~~s~~i~~Pl~~~d~~~~~DGAaA~vl~s~~~A~~l~~ 231 (399)
T PRK06059 152 RRRMDLYGATVEDFAQVKVKNARHGLLNPNARYRKEVTVEDVLASPVVSDPLRLLDICATSDGAAALIVASKSFARRHLG 231 (399)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHccCcHhhcCCCCCHHHHhcCCcccCCCchhhcCCCCCceEEEEEecHHHHHhhcc
Confidence 0000000 012221111 111 01244557999999999999999887
Q ss_pred CCceEEEEEEEEEcCCCCCCC--------------CCCCChHHHHHHHHHHHHHcCCCCCCcCEEEEccCCCccCCHHHH
Q 012221 306 GAPIIAEYLGGAVNCDAYHMT--------------DPRADGLGVSSCIESSLEDAGVSPEEVNYINAHATSTLAGDLAEI 371 (468)
Q Consensus 306 g~~i~a~i~g~~~~~d~~~~~--------------~~~~~~~~~~~~i~~al~~Agl~~~dId~v~~h~~gt~~~D~~E~ 371 (468)
+.+..++|+|++...+.++.. .+.+.......+++++|+++|++++|||++|.|++++. .|+
T Consensus 232 ~~~~~v~I~g~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~a~~~agl~~~Did~~El~d~f~~----~~l 307 (399)
T PRK06059 232 SVAGVPSVRAISTVTPRYPQHLPELPDIATDSTAAVPAPERVFKDQILDAAYAEAGIGPEDLSLAEVYDLSTA----LEL 307 (399)
T ss_pred ccCCceEEEEEEEecccccccccccccccccccccccccccHHHHHHHHHHHHHcCCCHHHCcEEeecccChH----HHH
Confidence 656678999998765432110 11111122357899999999999999999999999876 344
Q ss_pred HHHHHHh-c-----------------cCCCceeeecccccCccccchhHHHHHHHHHHHhcCCcCCCCCCCCCCCCCCcc
Q 012221 372 NAIKKVF-K-----------------NTTGIKINATKSMIGHCLGAAGGLEAIATVKAITTGWLHPSINQFNPEPSVEFD 433 (468)
Q Consensus 372 ~al~~~f-~-----------------~~~~~~v~s~k~~~Gh~~~AsG~~~l~~~~~~l~~~~~pp~~~~~~~~~~~~~~ 433 (468)
..++.+- . +..+++++++-...||+.||+|+.+++++++||+...
T Consensus 308 ~~~e~lGl~~~G~~~~~~~~G~~~~~G~~pvN~~GG~la~Ghp~gatG~~~~~e~~~qLrg~a----------------- 370 (399)
T PRK06059 308 DWYEHLGLCPKGEAEALLRSGATTLGGRIPVNPSGGLACFGEAIPAQAIAQVCELTWQLRGQA----------------- 370 (399)
T ss_pred HHHHHcCCCCCCcHHHHHHCCCccCCCCeeecCCCccccCCccCCccHHHHHHHHHHHhccCc-----------------
Confidence 4333321 0 0124556666666799999999999999999998741
Q ss_pred cccccccccCccEEEEEcccccCeeeEEEEee
Q 012221 434 TVANKKQQHEVNVAISNSFGFGGHNSVVAFSA 465 (468)
Q Consensus 434 ~~~~~~~~~~~~~~l~~s~g~gG~n~~~vl~~ 465 (468)
...|..+.+++++.+.|.+|+.+++||++
T Consensus 371 ---g~~Qv~~a~~gl~~~~g~~g~~~~~~l~~ 399 (399)
T PRK06059 371 ---GGRQVEGARVGITANQGLFGHGSSVIVAR 399 (399)
T ss_pred ---CCccCCCccEEEEeccCCcccceEEEecC
Confidence 22334456788888888889999999875
|
|
| >PRK08947 fadA 3-ketoacyl-CoA thiolase; Reviewed | Back alignment and domain information |
|---|
Probab=99.92 E-value=2e-23 Score=208.82 Aligned_cols=271 Identities=19% Similarity=0.219 Sum_probs=192.1
Q ss_pred HHHHHHHHHHHHHH-cCCCCccccccccccceEEEeecCCCccchHHHHHHHHHhCCCCcCCcCcchhhhhhhHHHHhhh
Q 012221 127 LRYCIVAGKKALED-ADLGADISKKIDKERAGVLVGTGMGGLTVFSDGVQALIEKGHRKITPFFIPYAITNMGSALLAID 205 (468)
Q Consensus 127 ~~l~l~a~~~AL~d-Agl~~~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~ia~~ 205 (468)
..|+..+++++|++ +|+ ++.++| .+++|+...... .+ ..++..++..
T Consensus 28 ~~L~~~~~~~al~~~agl---~~~~Id----~vi~g~~~~~~~----------------------~g---~~~ar~~~~~ 75 (387)
T PRK08947 28 EDLSAHLMRSLLARNPAL---DPAEID----DIIWGCVQQTLE----------------------QG---FNIARNAALL 75 (387)
T ss_pred HHHHHHHHHHHHHhccCc---ChHHhC----eEEEEecccccc----------------------cc---ccHHHHHHHH
Confidence 67888999999995 899 666777 688886421000 00 1113346677
Q ss_pred hCCCC--cceeecccChHHHHHHHHHHHHHHhCCCCEEEEEeeccccchhh-------------------hhHhhh----
Q 012221 206 LGFMG--PNYSISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAIIPIG-------------------LGGFVA---- 260 (468)
Q Consensus 206 lgl~G--p~~~v~~acas~l~Al~~A~~~I~~G~~d~~lvgG~e~~~~p~~-------------------~~~~~~---- 260 (468)
.|+.. |.++|+++|+||+.|+..|+++|++|++|++||||+|++..... ..+...
T Consensus 76 ~Gl~~~~p~~~V~~~caSG~~Ai~~A~~~I~sG~~d~vlv~G~E~ms~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 155 (387)
T PRK08947 76 AGIPHSVPAVTVNRLCGSSMQALHDAARAIMTGDGDVFLIGGVEHMGHVPMNHGVDFHPGLSKNVAKAAGMMGLTAEMLG 155 (387)
T ss_pred cCCCCCCcceeeechhHHHHHHHHHHHHHHHCCCCCEEEEccccccccCccccccCcchhhhhhccccchHHHHHHHHHH
Confidence 88853 77999999999999999999999999999999999997532100 000000
Q ss_pred ------------------ccccc--------c----------CC----CCCCCCC------------CC-CCC------C
Q 012221 261 ------------------CRALS--------Q----------RN----DDPQTAS------------RP-WDK------D 281 (468)
Q Consensus 261 ------------------~~~l~--------~----------~~----~~~~~~~------------rp-fd~------~ 281 (468)
.+... . .. .+|+... +| |+. .
T Consensus 156 ~~ygisre~~~~~avksh~~a~~a~~~g~f~~ei~pv~~~~~~~~~~~~~~da~~r~~~t~e~~~~~~~v~~p~~g~lt~ 235 (387)
T PRK08947 156 KMHGISREQQDAFAARSHQRAWAATQEGRFKNEIIPTEGHDADGVLKLFDYDEVIRPETTVEALAALRPAFDPVNGTVTA 235 (387)
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHHHHcCCCcceEeeeeecCCCCCceeecCCCCCcCCCCHHHHhcCCceeeCCCCcEEc
Confidence 00000 0 00 0112111 11 121 1
Q ss_pred CCCeeecceeEEEEecchhHHHhcCCceEEEEEEEEEcCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCcCEEEEccC
Q 012221 282 RDGFVMGEGAGVLVMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAGVSPEEVNYINAHAT 361 (468)
Q Consensus 282 ~~G~v~gEGaaavvL~~~~~A~~~g~~i~a~i~g~~~~~d~~~~~~~~~~~~~~~~~i~~al~~Agl~~~dId~v~~h~~ 361 (468)
.|...++|||+++||++++.|++.+.+++++|+|++.+....+ ..+.....+++++|+++|++|+|||++|.|..
T Consensus 236 ~~~~~~sDGAaAvvl~s~~~A~~~g~~p~~~I~g~~~~~~~~~-----~~~~~~~~a~~~al~~Agl~~~DId~~El~d~ 310 (387)
T PRK08947 236 GTSSALSDGASAMLVMSESRAKELGLKPRARIRSMAVAGCDPS-----IMGYGPVPATQKALKRAGLSISDIDVFELNEA 310 (387)
T ss_pred cccCCcCCceEEEEEccHHHHHHCCCCccEEEEEEEEcCcCcc-----cccccHHHHHHHHHHHcCCCHHHCCEEEeccc
Confidence 3445689999999999999999999999999999998753221 12223467899999999999999999999988
Q ss_pred CCccCCHHHHHHHHHH-hcc--CCCceeeecccccCccccchhHHHHHHHHHHHhcCCcCCCCCCCCCCCCCCccccccc
Q 012221 362 STLAGDLAEINAIKKV-FKN--TTGIKINATKSMIGHCLGAAGGLEAIATVKAITTGWLHPSINQFNPEPSVEFDTVANK 438 (468)
Q Consensus 362 gt~~~D~~E~~al~~~-f~~--~~~~~v~s~k~~~Gh~~~AsG~~~l~~~~~~l~~~~~pp~~~~~~~~~~~~~~~~~~~ 438 (468)
++. .|+..++.+ |.+ ..+++++++...+|||.||+|+.+++.++++|+.
T Consensus 311 F~~----~~l~~~e~lg~~~~~~~~vN~~GG~la~GhP~GAtG~~~v~~l~~~L~~------------------------ 362 (387)
T PRK08947 311 FAA----QSLPCLKDLGLLDKMDEKVNLNGGAIALGHPLGCSGARISTTLLNLMER------------------------ 362 (387)
T ss_pred chH----HHHHHHHHcCCCCCCCCCcCCCCchhhcCCCccccHHHHHHHHHHHHHh------------------------
Confidence 875 455555544 112 2578889999999999999999999999999975
Q ss_pred ccccCccEEEEEcccccCeeeEEEEee
Q 012221 439 KQQHEVNVAISNSFGFGGHNSVVAFSA 465 (468)
Q Consensus 439 ~~~~~~~~~l~~s~g~gG~n~~~vl~~ 465 (468)
.+.+++++++.|-||..+.+||++
T Consensus 363 ---~~~~~gl~~~~~g~G~g~a~~~e~ 386 (387)
T PRK08947 363 ---KDAQFGLATMCIGLGQGIATVFER 386 (387)
T ss_pred ---cCCCEEEEEEeecccceeEEEEEe
Confidence 124678888888778888888876
|
|
| >PRK08170 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.9e-23 Score=209.51 Aligned_cols=272 Identities=20% Similarity=0.317 Sum_probs=189.8
Q ss_pred HHHHHHHHHHHHHHHcCCCCccccccccccceEEEeecCCCccchHHHHHHHHHhCCCCcCCcCcchhhhhhhHHHHhhh
Q 012221 126 CLRYCIVAGKKALEDADLGADISKKIDKERAGVLVGTGMGGLTVFSDGVQALIEKGHRKITPFFIPYAITNMGSALLAID 205 (468)
Q Consensus 126 ~~~l~l~a~~~AL~dAgl~~~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~ia~~ 205 (468)
...|+.+|+++||+|+|+ +++++| +|++|+...... . ...+..++..
T Consensus 27 ~~~L~~~A~~~Al~dAgl---~~~dID----~vi~g~~~~~~~-------------------------~-~~~a~~v~~~ 73 (426)
T PRK08170 27 ASDLAVAAGRALLNRQPF---APDDLD----EVILGCAMPSPD-------------------------E-ANIARVVALR 73 (426)
T ss_pred HHHHHHHHHHHHHHHcCC---CHHHCC----EEEEEeccCCCC-------------------------c-ChHHHHHHHH
Confidence 367899999999999999 667777 788886531100 0 0124567788
Q ss_pred hCCC--CcceeecccChHHHHHHHHHHHHHHhCCCCEEEEEeeccccc-hhh---------------------h------
Q 012221 206 LGFM--GPNYSISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAII-PIG---------------------L------ 255 (468)
Q Consensus 206 lgl~--Gp~~~v~~acas~l~Al~~A~~~I~~G~~d~~lvgG~e~~~~-p~~---------------------~------ 255 (468)
+|+. -|.++|+.+|+|++.||..|+++|++|++|++||+|+|.+.. |.. +
T Consensus 74 lGl~~~~p~~~v~~~CaSg~~al~~A~~~I~sG~~d~vLv~G~E~ms~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (426)
T PRK08170 74 LGCGEKVPAWTVQRNCASGMQALDSAAANIALGRADLVLAGGVEAMSHAPLLFSEKMVRWLAGWYAAKSIGQKLAALGKL 153 (426)
T ss_pred hCcCCCceeeeccchhhHHHHHHHHHHHHHHCCCCCEEEEEEEecccCCccccccccccchhccccccccCccccccccc
Confidence 9995 399999999999999999999999999999999999996321 100 0
Q ss_pred -hHh-----------h------hcc-----cccc----------------CC--C------------------CCCC---
Q 012221 256 -GGF-----------V------ACR-----ALSQ----------------RN--D------------------DPQT--- 273 (468)
Q Consensus 256 -~~~-----------~------~~~-----~l~~----------------~~--~------------------~~~~--- 273 (468)
..+ . .+. .+.+ .+ . +|..
T Consensus 154 ~~~~~~~~~~~~~g~~~~~~~~~~a~~a~~~~~~ygitre~~a~vav~s~~~a~~A~~~g~~~~i~pv~~~~~np~a~de 233 (426)
T PRK08170 154 RPSYLAPVIGLLRGLTDPVVGLNMGQTAEVLAHRFGITREQMDAYAARSHQRLAAAQAEGRLKEVVPLFDRDGKFYDHDD 233 (426)
T ss_pred cccccccccccCccccccccCcCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHcCCcceEeeeecCCCCeeccCC
Confidence 000 0 000 0000 00 0 0000
Q ss_pred ------------CCCCC-CCC------CCCeeecceeEEEEecchhHHHhcCCceEEEEEEEEEcCCCCCCCCCCCChHH
Q 012221 274 ------------ASRPW-DKD------RDGFVMGEGAGVLVMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLG 334 (468)
Q Consensus 274 ------------~~rpf-d~~------~~G~v~gEGaaavvL~~~~~A~~~g~~i~a~i~g~~~~~d~~~~~~~~~~~~~ 334 (468)
..+|. +.. .|...++|||+++||++++.|++.+.++.++|.+++..... |...+.+
T Consensus 234 ~~r~~~t~e~~~~~~~v~~~p~~~lt~~~~s~~~DGAaA~vl~s~e~A~~~~~~p~~~i~~~~~~~~~-----~~~~~~~ 308 (426)
T PRK08170 234 GVRPDSSMEKLAKLKPFFDRPYGRVTAGNSSQITDGACWLLLASEEAVKKYGLPPLGRIVDSQWAALD-----PSQMGLG 308 (426)
T ss_pred CCCCCCCHHHHhcCCCcccCCCCCEeccccCCCCCceEEEEEecHHHHHHCCCCceEEEEEeeEeeeC-----chhhccc
Confidence 11222 101 34455799999999999999999998888899998776532 2223334
Q ss_pred HHHHHHHHHHHcCCCCCCcCEEEEccCCCccCCHHHHHHHHHH----h-----------c--cCCCceeeecccccCccc
Q 012221 335 VSSCIESSLEDAGVSPEEVNYINAHATSTLAGDLAEINAIKKV----F-----------K--NTTGIKINATKSMIGHCL 397 (468)
Q Consensus 335 ~~~~i~~al~~Agl~~~dId~v~~h~~gt~~~D~~E~~al~~~----f-----------~--~~~~~~v~s~k~~~Gh~~ 397 (468)
...+++++|+++||+++|||++|+|..++. .|+..+... | + +..++|++++--.+||+.
T Consensus 309 ~~~a~~~al~~aGl~~~did~~ei~daFa~----~~l~~l~~le~lGf~~~G~g~~~~~G~~~~~pvN~~GG~la~GHP~ 384 (426)
T PRK08170 309 PVHAATPLLQRHGLTLEDLDLWEINEAFAA----QVLACLAAWADEEYCREQLGLDGALGELDRERLNVDGGAIALGHPV 384 (426)
T ss_pred HHHHHHHHHHHcCCCHHHcCEEEecchhHH----HHHHHHHHhccccchhcccccccccCCCCcceecCCCCHHHhCCCc
Confidence 578999999999999999999999988885 333222211 0 1 013566666666679999
Q ss_pred cchhHHHHHHHHHHHhcCCcCCCCCCCCCCCCCCcccccccccccCccEEEEEcccccCeeeEEEEeec
Q 012221 398 GAAGGLEAIATVKAITTGWLHPSINQFNPEPSVEFDTVANKKQQHEVNVAISNSFGFGGHNSVVAFSAF 466 (468)
Q Consensus 398 ~AsG~~~l~~~~~~l~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~g~gG~n~~~vl~~~ 466 (468)
||+|++++..++.+|++. ..++++++...-||...++||++.
T Consensus 385 GAtG~~~~~~l~~~l~~~---------------------------~~~~g~~~~c~~gg~g~a~~~e~~ 426 (426)
T PRK08170 385 GASGARIVLHLLHALKRR---------------------------GTKRGIAAICIGGGQGGAMLLERV 426 (426)
T ss_pred cCccHHHHHHHHHHHHhh---------------------------CCCeEEEEEecCCChhheEEEEeC
Confidence 999999999999999862 135788888888899999999863
|
|
| >PRK06157 acetyl-CoA acetyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.92 E-value=8.3e-23 Score=205.53 Aligned_cols=280 Identities=18% Similarity=0.158 Sum_probs=185.0
Q ss_pred HHHHHHHHHHHHHHcCCCCccccccccccceEEEeecCCCccchHHHHHHHHHhCCCCcCCcCcchhhhhhhHHHHhhhh
Q 012221 127 LRYCIVAGKKALEDADLGADISKKIDKERAGVLVGTGMGGLTVFSDGVQALIEKGHRKITPFFIPYAITNMGSALLAIDL 206 (468)
Q Consensus 127 ~~l~l~a~~~AL~dAgl~~~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~ia~~l 206 (468)
..|+.+++++||+|+|| +++++| ++++|+....+. ... ....++..+
T Consensus 28 ~~L~~ea~~~AL~dagl---~~~dID----~v~vg~~~~~~~----------------------~~~----~~~~~a~~l 74 (398)
T PRK06157 28 EDLMVEAFLEALADAGI---EPKDID----AAWFGTHYDEIG----------------------SGK----SGTPLSRAL 74 (398)
T ss_pred HHHHHHHHHHHHHHcCC---CHHHCC----EEEEEecccccc----------------------ccc----hhHHHHHHc
Confidence 57899999999999999 667787 688886421100 000 012356678
Q ss_pred CCCC-cceeecccChHHHHHHHHHHHHHHhCCCCEEEEEeeccccc-hhh----------------------hhHhhhcc
Q 012221 207 GFMG-PNYSISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAII-PIG----------------------LGGFVACR 262 (468)
Q Consensus 207 gl~G-p~~~v~~acas~l~Al~~A~~~I~~G~~d~~lvgG~e~~~~-p~~----------------------~~~~~~~~ 262 (468)
|+.+ |.++|+.+|+|++.||++|+++|++|++|++||+|+|.+.. +.. ...+...+
T Consensus 75 Gl~~~~~~~v~~~c~sg~~ai~~A~~~I~sG~~d~vlv~G~e~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~a~~ 154 (398)
T PRK06157 75 RLPNIPVTRVENFCATGSEAFRGAVYAVASGAYDIALALGVEKLKDTGYGGLPVANPGTLADMTMPNVTAPGNFAQLASA 154 (398)
T ss_pred CCCCCCEEEEecccHHHHHHHHHHHHHHHCCCCCEEEEEEEeecccCccccccccccccchhcccccCchHHHHHHHHHH
Confidence 9877 88899999999999999999999999999999999997321 000 00000000
Q ss_pred ccccC----------------------CCCCCCCC------------CCC-C--CCCCCeeecceeEEEEecchhHHHhc
Q 012221 263 ALSQR----------------------NDDPQTAS------------RPW-D--KDRDGFVMGEGAGVLVMESLEHAMKR 305 (468)
Q Consensus 263 ~l~~~----------------------~~~~~~~~------------rpf-d--~~~~G~v~gEGaaavvL~~~~~A~~~ 305 (468)
.+.+. ..+|+... +|. + ..-|...++|||+++||.+++.|++.
T Consensus 155 ~~~~yG~t~e~~~~~~a~vav~~~~~A~~np~A~~r~~~t~e~v~~s~~v~~Pl~~~d~~~~~DGAaA~vl~s~~~A~~l 234 (398)
T PRK06157 155 YAAKYGVSREDLKRAMAHVSVKSHANGARNPKAHLRKAVTEEQVLKAPMIAGPLGLFDCCGVSDGAAAAIVTTPEIARAL 234 (398)
T ss_pred HHHHhCCCHHHHcccccHHHHHHHHHHhcCChhhcCCCCCHHHHhcCCcccCCCchhccCCCCCccEEEEEecHHHHHhh
Confidence 00000 00121111 111 0 11245558999999999999999988
Q ss_pred CCceEEEEEEEEEcCCCCCC-----CCCCCChHHHHHHHHHHHHHcCCC--CCCcCEEEEccCCCccCCHHHHHHHHHH-
Q 012221 306 GAPIIAEYLGGAVNCDAYHM-----TDPRADGLGVSSCIESSLEDAGVS--PEEVNYINAHATSTLAGDLAEINAIKKV- 377 (468)
Q Consensus 306 g~~i~a~i~g~~~~~d~~~~-----~~~~~~~~~~~~~i~~al~~Agl~--~~dId~v~~h~~gt~~~D~~E~~al~~~- 377 (468)
+.+..++|+|++...+.... ..+. .......+.+++|++|||+ ++|||++|+|++++. .|+..++.+
T Consensus 235 ~~~~~v~I~g~~~~~~~~~~~~~~~~~~~-~~~~~~~aa~~a~~~AGl~~~~~Did~~Ei~D~Fs~----~~l~~~e~lG 309 (398)
T PRK06157 235 GKKDPVYVKALQLAVSNGWELQYNGWDGS-YFPTTRIAARKAYREAGITDPREELSMAEVHDCFSI----TELVTMEDLG 309 (398)
T ss_pred CCCCCeEEEEEEEeccccccccccccccc-ccHHHHHHHHHHHHHcCCCCchhcCCEEEEecCChH----HHHHHHHHcC
Confidence 87566899999887543211 1121 1223457899999999998 799999999999986 344444433
Q ss_pred hcc---------------CC--CceeeecccccCccccchhHHHHHHHHHHHhcCCcCCCCCCCCCCCCCCccccccccc
Q 012221 378 FKN---------------TT--GIKINATKSMIGHCLGAAGGLEAIATVKAITTGWLHPSINQFNPEPSVEFDTVANKKQ 440 (468)
Q Consensus 378 f~~---------------~~--~~~v~s~k~~~Gh~~~AsG~~~l~~~~~~l~~~~~pp~~~~~~~~~~~~~~~~~~~~~ 440 (468)
|.+ .. +++.+++-..+||+.+|+|+.+++++++||+... ..+|
T Consensus 310 l~~~Ge~~~~~~~g~~~~~G~~pvN~~GG~la~Ghp~gatG~~~~~e~~~QLrg~a--------------------g~rQ 369 (398)
T PRK06157 310 LSERGQAWRDVLDGFFDADGGLPCQIDGGLKCFGHPIGASGLRMLYEMYLQLLGRA--------------------GERQ 369 (398)
T ss_pred CCCCCchHHHHHCCCccCCCCeeecCCCCcccCCCcccHhHHHHHHHHHHHhcccc--------------------cCcc
Confidence 111 12 3445555556699999999999999999998741 2334
Q ss_pred ccCccEEEEEccc-c--cCeeeEEEEe
Q 012221 441 QHEVNVAISNSFG-F--GGHNSVVAFS 464 (468)
Q Consensus 441 ~~~~~~~l~~s~g-~--gG~n~~~vl~ 464 (468)
..+.+++++++.| + |..++..|++
T Consensus 370 v~~a~~~l~~~~gg~~~~~~~~~~~~~ 396 (398)
T PRK06157 370 LKNPRLALTHNLGGAPGQNVCSVSIVG 396 (398)
T ss_pred CCCccEEEEeccCCcCCCCEEEEEEEe
Confidence 4567899998877 3 3344444544
|
|
| >PRK08313 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.1e-22 Score=203.80 Aligned_cols=286 Identities=19% Similarity=0.184 Sum_probs=193.0
Q ss_pred HHHHHHHHHHHHHHcCCCCccccccccccceEEEeecCCCccchHHHHHHHHHhCCCCcCCcCcchhhhhhhHHHHhhhh
Q 012221 127 LRYCIVAGKKALEDADLGADISKKIDKERAGVLVGTGMGGLTVFSDGVQALIEKGHRKITPFFIPYAITNMGSALLAIDL 206 (468)
Q Consensus 127 ~~l~l~a~~~AL~dAgl~~~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~ia~~l 206 (468)
..|+.+|+++||+|||+ +++++| ++++++.. .. +.+. ...+..++..+
T Consensus 25 ~eL~~eAa~~Al~dAgl---~~~dID----~iv~~~~~-~~----------------------~~~~--~~~~~~va~~L 72 (386)
T PRK08313 25 AGLVREAIDRALADAGL---TWDDID----AVVVGKAP-DF----------------------FEGV--MMPELFLADAL 72 (386)
T ss_pred HHHHHHHHHHHHHHcCC---CHHHCC----EEEEeccc-cc----------------------cccc--cCchHHHHHhc
Confidence 56899999999999999 667777 67776521 00 0000 01124678889
Q ss_pred CCCC-cceeecccChHHHHHHHHHHHHHHhCCCCEEEEEeeccccch---------------hh-----hhHh------h
Q 012221 207 GFMG-PNYSISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAIIP---------------IG-----LGGF------V 259 (468)
Q Consensus 207 gl~G-p~~~v~~acas~l~Al~~A~~~I~~G~~d~~lvgG~e~~~~p---------------~~-----~~~~------~ 259 (468)
|+++ |.+.|+++|+++..++..|+++|++|++|.|||.|+|..... .. +..+ .
T Consensus 73 Gl~~~~~~~v~~~casg~~al~~A~~~I~sG~~~~vLVvg~e~~s~~~~~~~~~~~~~~~~~~g~~~~~~~al~a~~ym~ 152 (386)
T PRK08313 73 GATGKPLIRVHTAGSVGGSTAVVAASLVQSGVYRRVLAVAWEKQSESNAMWALSIPVPFTKPVGAGAGGYFAPHVRAYIR 152 (386)
T ss_pred CCCCCceEEEeccCHHHHHHHHHHHHHHHCCCCCEEEEEEEEEccCCccccccccccccccccccchHHHHHHHHHHHHH
Confidence 9976 888999999999999999999999999999999999863211 00 0000 0
Q ss_pred hccccc----c--------CCCCCCCCCC-C-CC--------------CCCCCeeecceeEEEEecchhHHHhcCCceEE
Q 012221 260 ACRALS----Q--------RNDDPQTASR-P-WD--------------KDRDGFVMGEGAGVLVMESLEHAMKRGAPIIA 311 (468)
Q Consensus 260 ~~~~l~----~--------~~~~~~~~~r-p-fd--------------~~~~G~v~gEGaaavvL~~~~~A~~~g~~i~a 311 (468)
..+... . ...+|....| | ++ ..-|...++|||+++||.+++.|++.+.++.+
T Consensus 153 ~~G~~~e~la~vav~~~~~A~~NP~A~~r~~~~t~e~v~~s~~ia~Pl~~~d~~~~~DGAaAvvl~s~e~a~~l~~~~~~ 232 (386)
T PRK08313 153 RSGAPEHIGAMVAVKDRLNGAKNPYAHLHQPDITLEKVMASQMLWDPIRFDETCPSSDGACAVVIGDEEAADAAAGRPVA 232 (386)
T ss_pred HHCcCHHHHHHHHHHHHHHHccCcHHhcCCCCCCHHHHhcCCcccCCCchhccCCCCCceEEEEEecHHHHHhcCCCCCe
Confidence 001000 0 0012221111 1 21 11345568999999999999999987777778
Q ss_pred EEEEEEEcCCCCCCCC-CCCChHHHHHHHHHHHHHcCCC--CCCcCEEEEccCCCccCCHHHHHHHHHH-hcc-------
Q 012221 312 EYLGGAVNCDAYHMTD-PRADGLGVSSCIESSLEDAGVS--PEEVNYINAHATSTLAGDLAEINAIKKV-FKN------- 380 (468)
Q Consensus 312 ~i~g~~~~~d~~~~~~-~~~~~~~~~~~i~~al~~Agl~--~~dId~v~~h~~gt~~~D~~E~~al~~~-f~~------- 380 (468)
+|+|++...+...... +.........+++++|++||++ ++|||++|+|++++. .|+..+..+ |..
T Consensus 233 ~I~g~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~Agi~~p~~Did~~el~d~F~~----~~~~~~e~lGl~~~G~~~~~ 308 (386)
T PRK08313 233 WIHGTAMRTEPLAFAGRDQVNPQAGRDAAAALWKAAGITDPRDEIDVAEIYVPFSW----FEPMWLENLGFAPEGEGWKL 308 (386)
T ss_pred EEEEEEEEecCcccccccccccHHHHHHHHHHHHHcCCCCChhhCCEEEeccCChH----HHHHHHHHcCCCCCCchHHH
Confidence 9999998876543321 2223456678999999999998 699999999999986 344443333 110
Q ss_pred --------CCCceeeeccccc-CccccchhHHHHHHHHHHHhcCCcCCCCCCCCCCCCCCcccccccccccCccEEEEEc
Q 012221 381 --------TTGIKINATKSMI-GHCLGAAGGLEAIATVKAITTGWLHPSINQFNPEPSVEFDTVANKKQQHEVNVAISNS 451 (468)
Q Consensus 381 --------~~~~~v~s~k~~~-Gh~~~AsG~~~l~~~~~~l~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s 451 (468)
...+||+...+.+ ||+.||+|+.+++++++||+... ...|..+.+++++++
T Consensus 309 ~~~G~~~~~G~~pvN~~GG~l~g~p~gatG~~~~~e~~~qlrG~a--------------------g~rQv~~a~~~l~~~ 368 (386)
T PRK08313 309 TEAGETAIGGRLPVNPSGGVLSSNPIGASGMIRFAEAALQVMGKA--------------------GEHQVDGARKALGHA 368 (386)
T ss_pred HHCCCcCCCCCccccCCCcccccCCCcHHHHHHHHHHHHHhcccc--------------------cCCcCCCccEEEEec
Confidence 2234555444444 99999999999999999998741 233445667899998
Q ss_pred cc-ccCeeeEEEEeecCC
Q 012221 452 FG-FGGHNSVVAFSAFKP 468 (468)
Q Consensus 452 ~g-~gG~n~~~vl~~~~~ 468 (468)
.| .+...+.+||+.-.|
T Consensus 369 ~Gg~~~~~~~~v~~~~~~ 386 (386)
T PRK08313 369 YGGGSQFFSMWVVGSEKP 386 (386)
T ss_pred cCCcceEEEEEEEecCCC
Confidence 86 445555666666544
|
|
| >TIGR02445 fadA fatty oxidation complex, beta subunit FadA | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.8e-23 Score=207.45 Aligned_cols=273 Identities=18% Similarity=0.217 Sum_probs=190.6
Q ss_pred HHHHHHHHHHHHHHH-cCCCCccccccccccceEEEeecCCCccchHHHHHHHHHhCCCCcCCcCcchhhhhhhHHHHhh
Q 012221 126 CLRYCIVAGKKALED-ADLGADISKKIDKERAGVLVGTGMGGLTVFSDGVQALIEKGHRKITPFFIPYAITNMGSALLAI 204 (468)
Q Consensus 126 ~~~l~l~a~~~AL~d-Agl~~~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~ia~ 204 (468)
...|+.++++++|++ +|+ +++++| .|++|+...... .+ .| ++..++.
T Consensus 25 ~~~L~~~a~~~al~~~agl---~~~~Id----~v~~G~~~~~~~----------------------~g--~~-~ar~~~~ 72 (385)
T TIGR02445 25 AEDLSAHLMSKLLARNPKV---DPAEVE----DIYWGCVQQTLE----------------------QG--FN-IARNAAL 72 (385)
T ss_pred HHHHHHHHHHHHHHhccCC---CHHHcC----EEEEeccccccc----------------------cc--ch-HHHHHHH
Confidence 367899999999995 699 667787 688886421100 00 01 2334444
Q ss_pred hhCCC--CcceeecccChHHHHHHHHHHHHHHhCCCCEEEEEeeccccch-hh------------------hhHhhh---
Q 012221 205 DLGFM--GPNYSISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAIIP-IG------------------LGGFVA--- 260 (468)
Q Consensus 205 ~lgl~--Gp~~~v~~acas~l~Al~~A~~~I~~G~~d~~lvgG~e~~~~p-~~------------------~~~~~~--- 260 (468)
..|+. -|.++|+.+|+||+.|++.|++.|++|++|++|+||+|++... .. ..+...
T Consensus 73 ~~g~~~~~p~~tV~~~CaSG~~Ai~~Aa~~I~sG~~d~vlagG~E~ms~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 152 (385)
T TIGR02445 73 LAQIPHTSAAVTVNRLCGSSMQALHDAARAIMTGDADVCLVGGVEHMGHVPMMHGVDFHPGMSLHVAKAAGMMGLTAEML 152 (385)
T ss_pred HCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHCCCCCEEEEeeehhcccCccccCCCcchhHHhhhccccchHHHHHHHH
Confidence 55654 3779999999999999999999999999999999999974311 00 000000
Q ss_pred -------------------ccccc--------c---------CC-----CCCCCCCC------------C-CCC------
Q 012221 261 -------------------CRALS--------Q---------RN-----DDPQTASR------------P-WDK------ 280 (468)
Q Consensus 261 -------------------~~~l~--------~---------~~-----~~~~~~~r------------p-fd~------ 280 (468)
.+... . .+ .+|+...| | |+.
T Consensus 153 ~~~ygitre~~d~~A~~sh~~a~~a~~~g~f~nei~pv~~~~~~~~~~~~~~da~~r~~~t~e~~~~~~~v~~p~~g~lt 232 (385)
T TIGR02445 153 GKMHGISREQQDAFAARSHARAHAATQEGKFKNEIIPTQGHDADGFLKQFDYDEVIRPETTVESLAALRPAFDPKNGTVT 232 (385)
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHHHHcCCCccceeeeeeccCCCCceeeCCCCCCCCCCCHHHHhcCCceecCCCCcee
Confidence 00000 0 00 01332222 1 221
Q ss_pred CCCCeeecceeEEEEecchhHHHhcCCceEEEEEEEEEcCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCcCEEEEcc
Q 012221 281 DRDGFVMGEGAGVLVMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAGVSPEEVNYINAHA 360 (468)
Q Consensus 281 ~~~G~v~gEGaaavvL~~~~~A~~~g~~i~a~i~g~~~~~d~~~~~~~~~~~~~~~~~i~~al~~Agl~~~dId~v~~h~ 360 (468)
..|...++||++++||++++.|++++.+++++|+|++.+... +...+.+...+++++|+++||+|+||||+|+|.
T Consensus 233 ~~~~~~~sDGAaavvL~s~e~A~~~g~~~~a~I~g~~~~~~~-----~~~~~~~~~~a~~~al~~AGi~p~DId~~Ei~d 307 (385)
T TIGR02445 233 AGTSSALSDGASAMLVMSEQRANELGLKPRARIRSMAVAGCD-----PSIMGYGPVPATQKALKRAGLSISDIDVFELNE 307 (385)
T ss_pred cccCCCcCCceEEEEEecHHHHHHCCCCeeEEEEEEEEcCCC-----CcccchhHHHHHHHHHHHcCCCHHHcCEEEEcc
Confidence 134445899999999999999999999999999999987532 222233457889999999999999999999998
Q ss_pred CCCccCCHHHHHHHHHHh-cc--CCCceeeecccccCccccchhHHHHHHHHHHHhcCCcCCCCCCCCCCCCCCcccccc
Q 012221 361 TSTLAGDLAEINAIKKVF-KN--TTGIKINATKSMIGHCLGAAGGLEAIATVKAITTGWLHPSINQFNPEPSVEFDTVAN 437 (468)
Q Consensus 361 ~gt~~~D~~E~~al~~~f-~~--~~~~~v~s~k~~~Gh~~~AsG~~~l~~~~~~l~~~~~pp~~~~~~~~~~~~~~~~~~ 437 (468)
.++. .|+..++.+- .+ ..+++++++...+|||.||+|+..++.+++.|++
T Consensus 308 aFa~----~~l~~~e~lg~~~~g~~~vN~~GG~la~GhP~GATG~r~v~~l~~~l~~----------------------- 360 (385)
T TIGR02445 308 AFAA----QALPCLKDLGLLDKMDEKVNLNGGAIALGHPLGCSGARISTTLLNLMEQ----------------------- 360 (385)
T ss_pred ccHH----HHHHHHHHcCCCCCCCCCcCCCCchhhcCCCccccHHHHHHHHHHHHHh-----------------------
Confidence 8875 4555554431 12 2578888888889999999999998888855543
Q ss_pred cccccCccEEEEEcccccCeeeEEEEeec
Q 012221 438 KKQQHEVNVAISNSFGFGGHNSVVAFSAF 466 (468)
Q Consensus 438 ~~~~~~~~~~l~~s~g~gG~n~~~vl~~~ 466 (468)
.+.+++++.+.+-||...++||+++
T Consensus 361 ----~~~~~Gl~~~~~g~g~g~a~~~e~~ 385 (385)
T TIGR02445 361 ----KDATFGLATMCIGLGQGIATVFERV 385 (385)
T ss_pred ----cCCCeEEEEEecccChhheEEEEeC
Confidence 1235788888888999999999864
|
This subunit of the FadBA complex has acetyl-CoA C-acyltransferase (EC 2.3.1.16) activity, and is also known as beta-ketothiolase and fatty oxidation complex, beta subunit. This protein is almost always located adjacent to FadB (TIGR02437). The FadBA complex is the major complex active for beta-oxidation of fatty acids in E. coli. |
| >PRK06065 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.4e-22 Score=202.52 Aligned_cols=284 Identities=18% Similarity=0.154 Sum_probs=186.8
Q ss_pred HHHHHHHHHHHHHHHcCCCCccccccccccceEEEeecCCCccchHHHHHHHHHhCCCCcCCcCcchhhhhhhHHHHhhh
Q 012221 126 CLRYCIVAGKKALEDADLGADISKKIDKERAGVLVGTGMGGLTVFSDGVQALIEKGHRKITPFFIPYAITNMGSALLAID 205 (468)
Q Consensus 126 ~~~l~l~a~~~AL~dAgl~~~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~ia~~ 205 (468)
...|+.+|+++||+|+|+ ++.++| ++++++..... .+ ....+..++..
T Consensus 29 ~~~L~~~A~~~Al~dagl---~~~dID----~~i~~~~~~~~-----------------------~~--~~~~a~~l~~~ 76 (392)
T PRK06065 29 PQELAWEAASKALDEAGL---ELKDID----CVVIGSAPDAF-----------------------DG--VHMKGEYLSHG 76 (392)
T ss_pred HHHHHHHHHHHHHHHcCC---CHHHCC----EEEEeccCCcc-----------------------cc--cccHHHHHHHH
Confidence 467899999999999999 667777 67776421100 00 01124457778
Q ss_pred hCCCC-cceeecccChHHHHHHHHHHHHHHhCCCCEEEEEeeccccch-------------------hhh-----hHhhh
Q 012221 206 LGFMG-PNYSISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAIIP-------------------IGL-----GGFVA 260 (468)
Q Consensus 206 lgl~G-p~~~v~~acas~l~Al~~A~~~I~~G~~d~~lvgG~e~~~~p-------------------~~~-----~~~~~ 260 (468)
+|+.+ |.+.|+++|+|+..+|..|+++|++|.+|.|||+|+|.+... ... ..+..
T Consensus 77 lG~~~~~~~~V~~~gasG~~al~~A~~~I~sG~ad~vLVvg~e~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~~~~Al~a 156 (392)
T PRK06065 77 SGGIRKPVSRVYVGGATGVMTAIAGWYHVASGLCQKVLAVAEEKMSPARPHPQAVFRYIWDPILEKPLNPNLIWIFAMEM 156 (392)
T ss_pred cCCCCCCeEEEecCchhHHHHHHHHHHHHhCCCCCEEEEEEeecccccccchhHHHhhhccchhccCCCccHHHHHHHHH
Confidence 88874 999999999999999999999999999999999999873110 000 00101
Q ss_pred ccccccC------------------CCCCCCCC----------------CCCCCCCCCeeecceeEEEEecchhHHHhcC
Q 012221 261 CRALSQR------------------NDDPQTAS----------------RPWDKDRDGFVMGEGAGVLVMESLEHAMKRG 306 (468)
Q Consensus 261 ~~~l~~~------------------~~~~~~~~----------------rpfd~~~~G~v~gEGaaavvL~~~~~A~~~g 306 (468)
.+.+.+. ..+|.... -|+. .-|...++||++++||.+++.|++.+
T Consensus 157 ~rym~~yG~~~e~lA~vav~~~~~A~~NP~A~~r~~lt~e~vl~s~~ia~Pl~-l~d~~~~~DGAaA~vl~s~e~A~~l~ 235 (392)
T PRK06065 157 HRYMATYGIKKEEIALVSVKNKRNALNNPYAQLGSKITVEDVLKSEVLVWPVQ-LLDVSPVSDGAAAIVLASEDLARRYT 235 (392)
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHhhccCchhhhcCCCCHHHHhcCCcccCCCc-hhhcCCCCCceEEEEEeCHHHHHhcC
Confidence 1111110 01221111 1111 12445689999999999999999887
Q ss_pred CceEEEEEEEEEcCCCCCCCCC-CCChHHHHHHHHHHHHHcCCCC--CCcCEEEEccCCCccCCHHHHHHHHHH------
Q 012221 307 APIIAEYLGGAVNCDAYHMTDP-RADGLGVSSCIESSLEDAGVSP--EEVNYINAHATSTLAGDLAEINAIKKV------ 377 (468)
Q Consensus 307 ~~i~a~i~g~~~~~d~~~~~~~-~~~~~~~~~~i~~al~~Agl~~--~dId~v~~h~~gt~~~D~~E~~al~~~------ 377 (468)
.++ .+|+|++...+....... .........+.+++|+++|+++ +|||++|.|++++.. ....++++.-+
T Consensus 236 ~~~-v~I~g~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~aGi~~p~~diD~~ei~D~Fs~~-~l~~~E~lG~~~~G~~~ 313 (392)
T PRK06065 236 DTP-VWVEGVGWTLDNTEWPNRDLAYPRYVEFAARMAYKMAGIERPRKEIDVAEPYDPFDYK-ELHHLEGLQLAKRGEAP 313 (392)
T ss_pred CCC-EEEEEEEEecCccccccccccccHHHHHHHHHHHHHcCCCCchhhCcEEEecCCChHH-HHHHHHHcCCCCCCcHH
Confidence 665 559999887655432221 1233445679999999999985 999999999999862 22333333200
Q ss_pred --hcc-----CC--CceeeecccccCccccchhHHHHHHHHHHHhcCCcCCCCCCCCCCCCCCcccccccccccCc-cEE
Q 012221 378 --FKN-----TT--GIKINATKSMIGHCLGAAGGLEAIATVKAITTGWLHPSINQFNPEPSVEFDTVANKKQQHEV-NVA 447 (468)
Q Consensus 378 --f~~-----~~--~~~v~s~k~~~Gh~~~AsG~~~l~~~~~~l~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 447 (468)
+.+ .. +++.+++-...||+.+|+|+.+++++++||+... ..+|..+. +++
T Consensus 314 ~~~~~g~~~~~G~~pvN~~GG~la~Ghp~gatG~~~~~e~~~QLrg~a--------------------g~rQv~~a~~~~ 373 (392)
T PRK06065 314 KLLKEGVFDIDGDIPSSPSGGLLGVGNPIAAAGLMKVISIYWQLKGTA--------------------GKMQVKKPVHTG 373 (392)
T ss_pred HHHHCCCccCCCCeeecCCCccccCCCCccHHHHHHHHHHHHHHhccc--------------------cCCcCCCcccee
Confidence 000 12 4455555555699999999999999999998741 23344455 789
Q ss_pred EEEccc-ccCeeeEEEEe
Q 012221 448 ISNSFG-FGGHNSVVAFS 464 (468)
Q Consensus 448 l~~s~g-~gG~n~~~vl~ 464 (468)
+++++| .+..++.+||+
T Consensus 374 l~~~~Gg~~~~~~~~il~ 391 (392)
T PRK06065 374 VAQAWGDLMQAGTVIVLR 391 (392)
T ss_pred EEeccccccceeEEEEec
Confidence 998887 55556666664
|
|
| >PRK06365 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.3e-22 Score=205.38 Aligned_cols=288 Identities=18% Similarity=0.166 Sum_probs=185.0
Q ss_pred HHHHHHHHHHHHHHcCCCCccccccccccceEEEeecCCCccchHHHHHHHHHhCCCCcCCcCcchhhhhhhHHHHhhhh
Q 012221 127 LRYCIVAGKKALEDADLGADISKKIDKERAGVLVGTGMGGLTVFSDGVQALIEKGHRKITPFFIPYAITNMGSALLAIDL 206 (468)
Q Consensus 127 ~~l~l~a~~~AL~dAgl~~~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~ia~~l 206 (468)
..|+.+|+++||+|+|+ ++.++| +++++...... .+ .+.....++..+
T Consensus 38 ~eL~~eA~~~Al~dagl---~~~dID----~vv~~~~~~~~-----------------------~g--~~~~~~~~~~~l 85 (430)
T PRK06365 38 RERVKKAFDYAMNDAGL---TLADID----GSVASYFSDHF-----------------------QR--QLLAGIMVQDYL 85 (430)
T ss_pred HHHHHHHHHHHHHHcCC---CHHHcC----EEEEecccccc-----------------------cc--cchhhHHHHHhc
Confidence 57899999999999999 667777 56655421100 00 011122356778
Q ss_pred CCCC-cceeecccChHHHHHHHHHHHHHHhCCCCEEEEEeeccccchhhh-------------------------hHhhh
Q 012221 207 GFMG-PNYSISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAIIPIGL-------------------------GGFVA 260 (468)
Q Consensus 207 gl~G-p~~~v~~acas~l~Al~~A~~~I~~G~~d~~lvgG~e~~~~p~~~-------------------------~~~~~ 260 (468)
|++. |+++|+.+|+|+..||..|++.|++|++|+|||+|+|........ ..+..
T Consensus 86 Gl~~~~~~~v~~~~aSg~~ai~~A~~~I~sG~~~~vLv~G~e~~s~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~al~a 165 (430)
T PRK06365 86 GLVPKPSKRIEGGGATGGLAFQAGYEEIASGRMDCVAVYGFETMSHVNTWKGNEFIALASDTNFDYPLGGFYTGYYAMMA 165 (430)
T ss_pred CCCCCceEEEeCCcHHHHHHHHHHHHHHHcCCCCEEEEEEeeecccccchhhhhhhcccccccccccccCccHHHHHHHH
Confidence 9977 889999999999999999999999999999999999964321100 00000
Q ss_pred ccccccCC------------------CCCCCCC------------CCCC---CCCCCeeecceeEEEEecchhHHHhcCC
Q 012221 261 CRALSQRN------------------DDPQTAS------------RPWD---KDRDGFVMGEGAGVLVMESLEHAMKRGA 307 (468)
Q Consensus 261 ~~~l~~~~------------------~~~~~~~------------rpfd---~~~~G~v~gEGaaavvL~~~~~A~~~g~ 307 (468)
.+.+.+.+ .+|.... +++. ...|...++|||+++||.+++.|++.+.
T Consensus 166 ~ry~~~yG~t~e~la~vav~~~~~A~~NP~A~~~~~~t~e~v~~s~~i~~Plt~~d~~~~sDGAaAvvl~See~A~~l~~ 245 (430)
T PRK06365 166 VRHMYEFGTTVEQLAKVSVKNHGNAIHNPFAQSPMKITVEDVRKSPMVSYPLTRLDVCAMSDGAACAILASEDKAFEITD 245 (430)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHhhCcHhhcCCCCCHHHHhcCCccccCcchhhcCCcCCceEEEEEecHHHHHhcCC
Confidence 00000000 0111100 1110 0123344799999999999999998776
Q ss_pred ceEEEEEEEEEcCCCCCCCC----------------------C-CCChHHHHHHHHHHHHHcCCC--CCCcCEEEEccCC
Q 012221 308 PIIAEYLGGAVNCDAYHMTD----------------------P-RADGLGVSSCIESSLEDAGVS--PEEVNYINAHATS 362 (468)
Q Consensus 308 ~i~a~i~g~~~~~d~~~~~~----------------------~-~~~~~~~~~~i~~al~~Agl~--~~dId~v~~h~~g 362 (468)
++ .+|++++...++..... + -........+++++|+++||+ ++|||++|+|+++
T Consensus 246 ~p-v~i~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~AGl~~~~~DiD~~Ei~D~F 324 (430)
T PRK06365 246 KP-VLIKAIGTGSDTLRLADRPFGEVPLLPNESPDDYKDLRYPGVHSFRAGRMAAKEAYEMAGITDPLNDLDLIELHDAY 324 (430)
T ss_pred CC-eEEEEEEEeccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcCCCCCHHHCCEEEeecCC
Confidence 65 45667666554332111 0 012234457999999999998 7999999999999
Q ss_pred CccCCHHHHHHHHHHh-cc-----------------CCCceeeecccccCccccchhHHHHHHHHHHHhcCCcCCCCCCC
Q 012221 363 TLAGDLAEINAIKKVF-KN-----------------TTGIKINATKSMIGHCLGAAGGLEAIATVKAITTGWLHPSINQF 424 (468)
Q Consensus 363 t~~~D~~E~~al~~~f-~~-----------------~~~~~v~s~k~~~Gh~~~AsG~~~l~~~~~~l~~~~~pp~~~~~ 424 (468)
+. .|+..++.+- .. ..+++.+++-...||+.||+|+.+++++++||+..--+. .
T Consensus 325 a~----~~l~~lE~lGl~~~Ge~~~~~~~G~~~~~G~~piNt~GG~la~Ghp~GatG~~~~~e~~~QLrG~a~~~---~- 396 (430)
T PRK06365 325 TS----SEIQTYEDLGLCKYGEGGQFIESGKPELPGKLPVNPSGGLLAAGHAVGATGIMQAVFMFWQLQGRIKKH---F- 396 (430)
T ss_pred cH----HHHHHHHHcCCCCCCchHHHHHCCCcCCCCCccccCCCchhcCCCcccHHHHHHHHHHHHHHhcccCCC---C-
Confidence 86 3444333331 11 124555555556699999999999999999999752100 0
Q ss_pred CCCCCCCccccccc-ccccCccEEEEEccc-ccCeeeEEEEeec
Q 012221 425 NPEPSVEFDTVANK-KQQHEVNVAISNSFG-FGGHNSVVAFSAF 466 (468)
Q Consensus 425 ~~~~~~~~~~~~~~-~~~~~~~~~l~~s~g-~gG~n~~~vl~~~ 466 (468)
-.. .|..+.++++++++| .|..++++||+++
T Consensus 397 -----------~~~~rQv~~a~~~l~~~~gg~~~~~~~~vl~~~ 429 (430)
T PRK06365 397 -----------HDDYLQVKNAKRGLIHSHAGTGTYVTVTILEAP 429 (430)
T ss_pred -----------CcccccCCCccEEEEecCCcccceEEEEEEecC
Confidence 001 233456789998886 5556778888775
|
|
| >PRK07801 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.5e-23 Score=207.62 Aligned_cols=272 Identities=16% Similarity=0.178 Sum_probs=187.7
Q ss_pred HHHHHHHHHHHHHHHcCCCCccccccccccceEEEeecCCCccchHHHHHHHHHhCCCCcCCcCcchhhhhhhHHHHhhh
Q 012221 126 CLRYCIVAGKKALEDADLGADISKKIDKERAGVLVGTGMGGLTVFSDGVQALIEKGHRKITPFFIPYAITNMGSALLAID 205 (468)
Q Consensus 126 ~~~l~l~a~~~AL~dAgl~~~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~ia~~ 205 (468)
...|+.+++++||+|+|+ +++++| +|++|+....... ..+ ++......
T Consensus 26 ~~~L~~~a~~~al~dagl---~~~~ID----~vv~g~~~~~~~~------------------------~~~-~~~~~~l~ 73 (382)
T PRK07801 26 PADLGAHVLKGLVDRTGI---DPAAVD----DVIFGCVDTIGPQ------------------------AGN-IARTSWLA 73 (382)
T ss_pred HHHHHHHHHHHHHHHcCC---CHHHcC----EEEEEeeccCCcc------------------------ccc-HHHHHHHH
Confidence 356899999999999999 667777 7888753100000 000 11111122
Q ss_pred hCC--CCcceeecccChHHHHHHHHHHHHHHhCCCCEEEEEeeccccc-hh--h--hh---H----------hhh-cc--
Q 012221 206 LGF--MGPNYSISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAII-PI--G--LG---G----------FVA-CR-- 262 (468)
Q Consensus 206 lgl--~Gp~~~v~~acas~l~Al~~A~~~I~~G~~d~~lvgG~e~~~~-p~--~--~~---~----------~~~-~~-- 262 (468)
.|+ ..|.++|+++|+||+.|+..|+++|++|++|++||+|+|.+.. |. . .. . +.. .+
T Consensus 74 ~gl~~~~p~~~v~~acaSg~~Av~~Aa~~I~sG~~d~vLv~G~e~ms~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 153 (382)
T PRK07801 74 AGLPEEVPGVTVDRQCGSSQQAIHFAAQAVMSGTQDLVVAGGVQNMSQIPISSAMTAGEQLGFTSPFAESKGWLHRYGDQ 153 (382)
T ss_pred cCCCCCCceeeecchhhhHHHHHHHHHHHHHCCCCCEEEEcchhhhcCCcccccccccccccCCcccccCcchhhhccCC
Confidence 333 4688999999999999999999999999999999999995422 21 0 00 0 000 00
Q ss_pred ----------ccccCCC------------------CCCC----------------------------CCCCCC-----CC
Q 012221 263 ----------ALSQRND------------------DPQT----------------------------ASRPWD-----KD 281 (468)
Q Consensus 263 ----------~l~~~~~------------------~~~~----------------------------~~rpfd-----~~ 281 (468)
.+.+... +|.. ..+|.. ..
T Consensus 154 ~~~~~~~a~~~~~~yG~tre~~a~vav~~~~~a~~n~~ag~~~~~~~p~~~~~~d~~~~~~t~e~~~~~~~i~~~~pl~~ 233 (382)
T PRK07801 154 EVSQFRGAELIAEKWGISREEMERFALESHRRAFAAIRAGRFDNEIVPVGGVTVDEGPRETSLEKMAGLKPLVEGGRLTA 233 (382)
T ss_pred CCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHcCCCccccccccCccccCCcCcCCHHHHhcCCCCCCCCCccc
Confidence 0000000 0000 111211 12
Q ss_pred CCCeeecceeEEEEecchhHHHhcCCceEEEEEEEEEcCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCcCEEEEccC
Q 012221 282 RDGFVMGEGAGVLVMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAGVSPEEVNYINAHAT 361 (468)
Q Consensus 282 ~~G~v~gEGaaavvL~~~~~A~~~g~~i~a~i~g~~~~~d~~~~~~~~~~~~~~~~~i~~al~~Agl~~~dId~v~~h~~ 361 (468)
.|...++|||+++||++++.|++++.+++++|+|++...+.... ...+...+++++|+++||+++|||++|.|.+
T Consensus 234 ~d~~~~~DGaaa~il~s~e~a~~~~~~~~~~i~~~~~~~~~~~~-----~~~~~~~a~~~a~~~agi~~~did~~e~~d~ 308 (382)
T PRK07801 234 AVASQISDGASAVLLASERAVKRHGLTPRARIHHLSVRGDDPVF-----MLTAPIPATRYALEKTGLSIDDIDVVEINEA 308 (382)
T ss_pred ccCCCCCCceEEEEEecHHHHHHCCCCccEEEEEEEEecCChHh-----hccChHHHHHHHHHHcCCCHHHcCEeeeccc
Confidence 34455799999999999999999998888999998766532110 1112256899999999999999999999998
Q ss_pred CCccCCHHHHHHHHHHhccCCCceeeecccccCccccchhHHHHHHHHHHHhcCCcCCCCCCCCCCCCCCcccccccccc
Q 012221 362 STLAGDLAEINAIKKVFKNTTGIKINATKSMIGHCLGAAGGLEAIATVKAITTGWLHPSINQFNPEPSVEFDTVANKKQQ 441 (468)
Q Consensus 362 gt~~~D~~E~~al~~~f~~~~~~~v~s~k~~~Gh~~~AsG~~~l~~~~~~l~~~~~pp~~~~~~~~~~~~~~~~~~~~~~ 441 (468)
++. .|+..++..-=...+++.++++..+||+.||+|+++++.+++||+..
T Consensus 309 Fa~----~~~~~~e~lG~~~~pvN~~GG~l~~Ghp~gasG~~~~~e~~~qL~~~-------------------------- 358 (382)
T PRK07801 309 FAP----VVLAWLKETGADPAKVNPNGGAIALGHPLGATGAKLMTTLLHELERT-------------------------- 358 (382)
T ss_pred chH----HHHHHHHHhCCCchhcCCCcchhhhcCcHHHHHHHHHHHHHHHHHhc--------------------------
Confidence 885 45555554411235789999999999999999999999999999861
Q ss_pred cCccEEEEEcccccCeeeEEEEee
Q 012221 442 HEVNVAISNSFGFGGHNSVVAFSA 465 (468)
Q Consensus 442 ~~~~~~l~~s~g~gG~n~~~vl~~ 465 (468)
..++++.++.|.||+.+++||++
T Consensus 359 -~~~~gl~~~~gggg~~~~~vl~~ 381 (382)
T PRK07801 359 -GGRYGLQTMCEGGGTANVTIIER 381 (382)
T ss_pred -CCCEEEEEEcccccceeEEEEEe
Confidence 23578888888889999999875
|
|
| >PRK08142 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.8e-22 Score=201.50 Aligned_cols=281 Identities=17% Similarity=0.156 Sum_probs=185.4
Q ss_pred HHHHHHHHHHHHHHcCCCCccccccccccceEEEeecCCCccchHHHHHHHHHhCCCCcCCcCcchhhhhhhHHHHhhhh
Q 012221 127 LRYCIVAGKKALEDADLGADISKKIDKERAGVLVGTGMGGLTVFSDGVQALIEKGHRKITPFFIPYAITNMGSALLAIDL 206 (468)
Q Consensus 127 ~~l~l~a~~~AL~dAgl~~~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~ia~~l 206 (468)
..|+.+|+++||+|||| +++++| +++.+... . .. ....++..+
T Consensus 26 ~~L~~eA~~~Al~DAgl---~~~dID----~~~~~~~~---~------------------~~---------~~~~~~~~l 68 (388)
T PRK08142 26 AQLHAEVAKGALADAGL---SLADVD----GYFCAGDA---P------------------GL---------GPASMVDYL 68 (388)
T ss_pred HHHHHHHHHHHHHHcCC---CHHHCC----EEEEcCCC---C------------------Cc---------cHHHHHHhC
Confidence 57899999999999999 667787 34431110 0 00 012367778
Q ss_pred CCCC-cceeecccChHHHHHHHHHHHHHHhCCCCEEEEEeeccccch---hh-------------h-----------hHh
Q 012221 207 GFMG-PNYSISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAIIP---IG-------------L-----------GGF 258 (468)
Q Consensus 207 gl~G-p~~~v~~acas~l~Al~~A~~~I~~G~~d~~lvgG~e~~~~p---~~-------------~-----------~~~ 258 (468)
|+++ +...+.++|+|+..+|..|+++|++|.+|+|||+|+|..... .. + ..+
T Consensus 69 Gl~~~~~~~v~~gg~s~~~a~~~A~~~I~sG~~d~vLvvg~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~Al 148 (388)
T PRK08142 69 GLKLRHVDSTETGGSSYLAHVGHAAQAIAAGKCSVALITLAGRPRSEGSSGTEPRNWGADAPDAPFEAPYGPTTHNLYAM 148 (388)
T ss_pred CCCCeeeccccCCcHHHHHHHHHHHHHHHcCCCCEEEEEeeeecccCCccccccccccccccccchhcccccccHHHHHH
Confidence 9976 778899999999999999999999999999999998863211 00 0 000
Q ss_pred hhccccccC------------------CCCCCCCC-CCCCC--------------CCCCeeecceeEEEEecchhHHHhc
Q 012221 259 VACRALSQR------------------NDDPQTAS-RPWDK--------------DRDGFVMGEGAGVLVMESLEHAMKR 305 (468)
Q Consensus 259 ~~~~~l~~~------------------~~~~~~~~-rpfd~--------------~~~G~v~gEGaaavvL~~~~~A~~~ 305 (468)
...+.+.+. ..+|.... +|++. .-|...++|||+++||.+++.|++.
T Consensus 149 ~a~~ym~~yG~t~e~la~vav~~~~~A~~NP~A~~r~~~t~e~vl~s~~Ia~Pl~l~d~~~~~DGAaA~vl~s~~~A~~l 228 (388)
T PRK08142 149 CAMRHMHEYGTTSEQLAWIKVAASHHAQHNPHAMLRDVVTVEDVLNSPMIADPLHRLDCCVVTDGGGALVVVRPEIARSL 228 (388)
T ss_pred HHHHHHHHHCcCHHHHHHHHHHHHHHhccCChhhcCCCCCHHHHhcCCcccCCchhhccCcccCceEEEEEecHHHHhhc
Confidence 000000000 01222111 11110 1255568999999999999999987
Q ss_pred CCceEEEEEEEEEcCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCcCEEEEccCCCccCCHHHHHHHHHH--------
Q 012221 306 GAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAGVSPEEVNYINAHATSTLAGDLAEINAIKKV-------- 377 (468)
Q Consensus 306 g~~i~a~i~g~~~~~d~~~~~~~~~~~~~~~~~i~~al~~Agl~~~dId~v~~h~~gt~~~D~~E~~al~~~-------- 377 (468)
+. +.++|+|++...+..+...++........+++++|++||++|+|||++|.|++++.. ..+.+++|.-+
T Consensus 229 ~~-~~v~I~g~~~~~~~~~~~~~~~~~~~~~~aa~~a~~~AGi~~~did~~elyD~Fs~~-~~~~~E~lGl~~~Ge~~~~ 306 (388)
T PRK08142 229 KR-PLVKVLGAGEAIKGQMGGKVDLTYSGAAWSGPAAFAEAGVTPADIKYASIYDSFTIT-VLMQLEDLGFCKKGEGGKF 306 (388)
T ss_pred CC-CCEEEEEEEEecCCccccCcccccHHHHHHHHHHHHHcCCCHHHCCEEEEeccchHH-HHHHHHHcCCCCCCchHHH
Confidence 64 458999999987765444444445556789999999999999999999999999873 33333333211
Q ss_pred hcc------CCCceeeecccc--cCccccchhHHHHHHHHHHHhcCCcCCCCCCCCCCCCCCcccccccccccCccEEEE
Q 012221 378 FKN------TTGIKINATKSM--IGHCLGAAGGLEAIATVKAITTGWLHPSINQFNPEPSVEFDTVANKKQQHEVNVAIS 449 (468)
Q Consensus 378 f~~------~~~~~v~s~k~~--~Gh~~~AsG~~~l~~~~~~l~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 449 (468)
+.+ ...+||+...+. .||+.+|+|+.+++++++||+...- ..+|..+.+++++
T Consensus 307 v~~g~~~~~~G~lPvN~sGG~l~~G~p~gatG~~~~~E~~~QLrG~ag-------------------~~rQV~~a~~gl~ 367 (388)
T PRK08142 307 VADGNLISGVGKLPFNTDGGGLCNNHPANRGGMTKVIEAVRQLRGEAH-------------------PAVQVPNCDLALA 367 (388)
T ss_pred HHCCCcccCCCCccccCCChhhcCCCcCcccHHHHHHHHHHHHcCCCC-------------------CCCCCCCCcEEEE
Confidence 001 133565444444 4999999999999999999986310 1123345678998
Q ss_pred Ecccc-cC---eeeEEEEee
Q 012221 450 NSFGF-GG---HNSVVAFSA 465 (468)
Q Consensus 450 ~s~g~-gG---~n~~~vl~~ 465 (468)
.++|- .| .++.+||++
T Consensus 368 ~~~Gg~~~~~~~~~~~vl~~ 387 (388)
T PRK08142 368 HGTGGLLGSRHGSATLILER 387 (388)
T ss_pred eCCCCCCcCCCceEEEEEec
Confidence 88772 22 335666653
|
|
| >PRK09268 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.4e-22 Score=201.17 Aligned_cols=277 Identities=18% Similarity=0.258 Sum_probs=184.6
Q ss_pred HHHHHHHHHHHHHHHcCCCCccccccccccceEEEeecCCCccchHHHHHHHHHhCCCCcCCcCcchhhhhhhHHHHhhh
Q 012221 126 CLRYCIVAGKKALEDADLGADISKKIDKERAGVLVGTGMGGLTVFSDGVQALIEKGHRKITPFFIPYAITNMGSALLAID 205 (468)
Q Consensus 126 ~~~l~l~a~~~AL~dAgl~~~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~ia~~ 205 (468)
...|+.++++++|+++|+ +++++| .+++|+..+..... .++..++..
T Consensus 31 ~~eL~~~a~~~al~~agl---~~~~Id----~vv~G~~~~~~~~~--------------------------~~~r~~~l~ 77 (427)
T PRK09268 31 NQDMLTAALDGLVDRFGL---QGERLG----EVVAGAVLKHSRDF--------------------------NLTRECVLG 77 (427)
T ss_pred HHHHHHHHHHHHHHHcCC---CHHHCC----EEEEEecccCCccc--------------------------cHHHHHHHH
Confidence 367899999999999999 667777 68888753211000 012233333
Q ss_pred --hCCCCcceeecccChHHHHHHHHHHHHHHhCCCCEEEEEeeccccc-hhhhh--------------------------
Q 012221 206 --LGFMGPNYSISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAII-PIGLG-------------------------- 256 (468)
Q Consensus 206 --lgl~Gp~~~v~~acas~l~Al~~A~~~I~~G~~d~~lvgG~e~~~~-p~~~~-------------------------- 256 (468)
++...|.++|+++|+||+.|+..|+++|++|.+|++||||+|.+.. |..+.
T Consensus 78 ~gl~~~~p~~~V~~~CaSG~~ai~~A~~~I~sG~~d~vlvgG~E~ms~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (427)
T PRK09268 78 SALSPYTPAYDLQQACGTGLEAAILVANKIALGQIDSGIAGGVDTTSDAPIAVNEGLRKILLELNRAKTTGDRLKALGKL 157 (427)
T ss_pred cCCCCCCceeeeechhhHHHHHHHHHHHHHHCCCCCEEEEeeEEccCCCcccccccccccccccccccccCccccccccc
Confidence 4446799999999999999999999999999999999999997432 11000
Q ss_pred ----------H----hh-h-cccc----------ccC-------------CC-----------CCC------CCC-----
Q 012221 257 ----------G----FV-A-CRAL----------SQR-------------ND-----------DPQ------TAS----- 275 (468)
Q Consensus 257 ----------~----~~-~-~~~l----------~~~-------------~~-----------~~~------~~~----- 275 (468)
. +. . ++.+ ++. .. +|. ...
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~m~~~ae~~a~~ygisre~~d~~Avksh~~A~~A~~~g~~~~einP~~~~~~D~~~r~~~t 237 (427)
T PRK09268 158 RPKHLAPEIPRNGEPRTGLSMGEHAAITAKEWGISREAQDELAAASHQNLAAAYDRGFFDDLITPFLGLTRDNNLRPDSS 237 (427)
T ss_pred ccccccccCccccccccCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccCccCcccCCCCCCCCC
Confidence 0 00 0 0000 000 00 222 011
Q ss_pred -------CC-CCC-------CCCCeeecceeEEEEecchhHHHhcCCceEEEE-EEEEEcCCCCCCCCCCCChHHHHHHH
Q 012221 276 -------RP-WDK-------DRDGFVMGEGAGVLVMESLEHAMKRGAPIIAEY-LGGAVNCDAYHMTDPRADGLGVSSCI 339 (468)
Q Consensus 276 -------rp-fd~-------~~~G~v~gEGaaavvL~~~~~A~~~g~~i~a~i-~g~~~~~d~~~~~~~~~~~~~~~~~i 339 (468)
+| |+. ..|...++|||+++||.+++.|++.+.++.++| .+.....+..+ .+.........++
T Consensus 238 ~e~l~~~~~v~~p~~~g~lt~~n~~~~~DGAaAvvl~s~~~A~~l~~~p~~~i~~~~~~~~~~~~--~~~~~~~~~~~a~ 315 (427)
T PRK09268 238 LEKLAKLKPVFGKGGRATMTAGNSTPLTDGASVVLLASEEWAAEHGLPVLAYLVDAETAAVDFVH--GKEGLLMAPAYAV 315 (427)
T ss_pred HHHHhCCCcccccCCCCceeccccCCCCCceEEEEEecHHHHHHcCCCceEEEEEEEEEcCCccc--ccchhhccHHHHH
Confidence 22 222 123334899999999999999999888887776 55555555321 1111223445799
Q ss_pred HHHHHHcCCCCCCcCEEEEccCCCccCCHHHHHHHHHH------------hc--cCCCceeeecccccCccccchhHHHH
Q 012221 340 ESSLEDAGVSPEEVNYINAHATSTLAGDLAEINAIKKV------------FK--NTTGIKINATKSMIGHCLGAAGGLEA 405 (468)
Q Consensus 340 ~~al~~Agl~~~dId~v~~h~~gt~~~D~~E~~al~~~------------f~--~~~~~~v~s~k~~~Gh~~~AsG~~~l 405 (468)
+++|++|||+++|||++|.|..++.. ...|+..+... .+ +..+++.+++--.+||+.||+|+.++
T Consensus 316 ~~a~~~AGl~~~Did~~Ei~d~Fa~~-~l~~l~~~e~lG~~~~g~g~~~~~G~~~~~pvN~~GG~la~GhP~gATG~~~v 394 (427)
T PRK09268 316 PRLLARNGLTLQDFDFYEIHEAFASQ-VLATLKAWEDEEYCRERLGLDAPLGSIDRSKLNVNGSSLAAGHPFAATGGRIV 394 (427)
T ss_pred HHHHHHcCCCHHHCCEEEeccccHHH-HHHHHHHhhhccccccccccccccCcCCCcccCCCcCHHhcCCCcccchHHHH
Confidence 99999999999999999999998863 22344333211 01 12345555656666999999999999
Q ss_pred HHHHHHHhcCCcCCCCCCCCCCCCCCcccccccccccCccEEEEEcccccCeeeEEEEee
Q 012221 406 IATVKAITTGWLHPSINQFNPEPSVEFDTVANKKQQHEVNVAISNSFGFGGHNSVVAFSA 465 (468)
Q Consensus 406 ~~~~~~l~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~g~gG~n~~~vl~~ 465 (468)
+++++||+.+ ..++++++...-||...++||++
T Consensus 395 ~e~~~QL~~~---------------------------~~~~gl~~~c~~gG~g~a~~~e~ 427 (427)
T PRK09268 395 ATLAKLLAEK---------------------------GSGRGLISICAAGGQGVTAILER 427 (427)
T ss_pred HHHHHHHHhc---------------------------CCCEEEEEEcccCchheEEEEeC
Confidence 9999999863 13578888888899999999874
|
|
| >PRK06289 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.7e-22 Score=202.60 Aligned_cols=288 Identities=18% Similarity=0.128 Sum_probs=182.3
Q ss_pred HHHHHHHHHHHHHHHcCCCCccccccccccceEEEeecCCCccchHHHHHHHHHhCCCCcCCcCcchhhhhhhHHHHhhh
Q 012221 126 CLRYCIVAGKKALEDADLGADISKKIDKERAGVLVGTGMGGLTVFSDGVQALIEKGHRKITPFFIPYAITNMGSALLAID 205 (468)
Q Consensus 126 ~~~l~l~a~~~AL~dAgl~~~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~ia~~ 205 (468)
...|+.+|+++||+|||+ +++++| +|++|+..+.... . ...+... .. ...
T Consensus 26 ~~eLa~eA~~~AL~dAgl---~~~dID----~vi~g~~~~~~~~----------------~----~~~~~~~-~~--~~~ 75 (403)
T PRK06289 26 FADLTREVVDGTLAAAGV---DADDIE----VVHVGNFFGELFA----------------G----QGHLGAM-PA--TVH 75 (403)
T ss_pred HHHHHHHHHHHHHHHcCC---CHHHCC----EEEEEeccccccc----------------c----ccccchH-HH--HHh
Confidence 467999999999999999 777887 7888865322100 0 0000000 11 112
Q ss_pred hCCCC-cceeecccChHHHHHHHHHHHHHHhCCCCEEEEEeeccccchh-h-----h--------------------hHh
Q 012221 206 LGFMG-PNYSISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAIIPI-G-----L--------------------GGF 258 (468)
Q Consensus 206 lgl~G-p~~~v~~acas~l~Al~~A~~~I~~G~~d~~lvgG~e~~~~p~-~-----~--------------------~~~ 258 (468)
.++.| |.++|+++|+|++.||..|+.+|++|++|+|||+|+|.+.... . + ..+
T Consensus 76 ~~~~g~~~~~v~~~Casg~~al~~Aa~~I~sG~~~~VLvvg~e~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al 155 (403)
T PRK06289 76 PALWGVPASRHEAACASGSVATLAAMADLRAGRYDVALVVGVELMKTVPGDVAAEHLGAAAWTGHEGQDARFPWPSMFAR 155 (403)
T ss_pred hcCCCCceeecccccHHHHHHHHHHHHHHHcCCCCEEEEEEEEecCCCCchhhHHhhhcccccccccccCCCccHHHHHH
Confidence 34444 8999999999999999999999999999999999999732110 0 0 000
Q ss_pred hhccccccC------------------CCCCCCCCC------CCC--------------CCCCCeeecceeEEEEecchh
Q 012221 259 VACRALSQR------------------NDDPQTASR------PWD--------------KDRDGFVMGEGAGVLVMESLE 300 (468)
Q Consensus 259 ~~~~~l~~~------------------~~~~~~~~r------pfd--------------~~~~G~v~gEGaaavvL~~~~ 300 (468)
...+.+.+. ..+|....+ |.+ ..-|...++|||+++||.+++
T Consensus 156 ~a~~y~~~yG~t~e~la~va~~~~~~A~~NP~A~~~~~~~~~~~~~~d~~~s~~i~~Pl~~~d~~~~~DGAaA~vl~s~e 235 (403)
T PRK06289 156 VADEYDRRYGLDEEHLRAIAEINFANARRNPNAQTRGWAFPDEATNDDDATNPVVEGRLRRQDCSQVTDGGAGVVLASDA 235 (403)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHccCcHhhcCccccccccchhhhhcCCcccCCCchhhcCCCCCceeEEEEEcHH
Confidence 000000000 002221111 100 011334478999999999999
Q ss_pred HHHhcCC-ceEEEEEEEEEcCCCCCCCC------CCC-ChHHHHHHHHHHHHHcCCCCCCcCEEEEccCCCccCCHHHHH
Q 012221 301 HAMKRGA-PIIAEYLGGAVNCDAYHMTD------PRA-DGLGVSSCIESSLEDAGVSPEEVNYINAHATSTLAGDLAEIN 372 (468)
Q Consensus 301 ~A~~~g~-~i~a~i~g~~~~~d~~~~~~------~~~-~~~~~~~~i~~al~~Agl~~~dId~v~~h~~gt~~~D~~E~~ 372 (468)
.|++.+. ++.++|+|++..++...... .++ .......+.+++|++|||+++|||++|.|+.++.. ..+.++
T Consensus 236 ~a~~l~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~a~~~Agi~~~Didv~el~D~fa~~-~l~~le 314 (403)
T PRK06289 236 YLRDYADARPIPRIKGWGHRTAPLGLEQKLDRSAGDPYVLPHVRQAVLDAYRRAGVGLDDLDGFEVHDCFTPS-EYLAID 314 (403)
T ss_pred HHHHhccCCCCEEEEEEEEeccccccccccccccccccccHHHHHHHHHHHHHcCCCHHHCeEEeeeccchHH-HHHHHH
Confidence 9988775 56789999998765432211 111 22335679999999999999999999999999863 333333
Q ss_pred HHHHHhc-------------cCC--CceeeecccccCccccchhHHHHHHHHHHHhcCCcCCCCCCCCCCCCCCcccccc
Q 012221 373 AIKKVFK-------------NTT--GIKINATKSMIGHCLGAAGGLEAIATVKAITTGWLHPSINQFNPEPSVEFDTVAN 437 (468)
Q Consensus 373 al~~~f~-------------~~~--~~~v~s~k~~~Gh~~~AsG~~~l~~~~~~l~~~~~pp~~~~~~~~~~~~~~~~~~ 437 (468)
++.-.-. ... ++|.+++-...||+.||+|+.+++++++||+..- .
T Consensus 315 ~lGl~~~Ge~~~~v~~G~~~~~G~lpvN~~GG~la~Ghp~gatG~~~~~e~~~QLrg~a--------------------g 374 (403)
T PRK06289 315 HIGLTGPGESWKAIENGEIAIGGRLPINPSGGLIGGGHPVGASGVRMLLDAAKQVTGTA--------------------G 374 (403)
T ss_pred HcCCCCCCcHHHHHhcCCcccCCCeeEcCCCCccccCCCccchHHHHHHHHHHHHhccc--------------------c
Confidence 3321110 022 3444555555699999999999999999998741 1
Q ss_pred cccccCccEEEEEccc-ccCeeeEEEEe
Q 012221 438 KKQQHEVNVAISNSFG-FGGHNSVVAFS 464 (468)
Q Consensus 438 ~~~~~~~~~~l~~s~g-~gG~n~~~vl~ 464 (468)
..|....+.+++.+.| .+|++.++|++
T Consensus 375 ~~Qv~~~~~~l~~~~gg~~~~~~~~i~~ 402 (403)
T PRK06289 375 DYQVEGAKTFGTLNIGGSTTTTVSFVVG 402 (403)
T ss_pred CccCCchheEEEEecCcccceEEEEEEe
Confidence 2233345677777776 55566666664
|
|
| >cd00826 nondecarbox_cond_enzymes nondecarboxylating condensing enzymes; In general, thiolases catalyze the reversible thiolytic cleavage of 3-ketoacyl-CoA into acyl-CoA and acetyl-CoA, a 2-step reaction involving a covalent intermediate formed with a catalytic cysteine | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.6e-22 Score=200.42 Aligned_cols=282 Identities=20% Similarity=0.217 Sum_probs=181.3
Q ss_pred HHHHHHHHHHHHHHHHcCCCCccccccccccceEEEeecCCCccchHHHHHHHHHhCCCCcCCcCcchhhhhhhHHHHhh
Q 012221 125 DCLRYCIVAGKKALEDADLGADISKKIDKERAGVLVGTGMGGLTVFSDGVQALIEKGHRKITPFFIPYAITNMGSALLAI 204 (468)
Q Consensus 125 ~~~~l~l~a~~~AL~dAgl~~~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~ia~ 204 (468)
....|+..++++||+++|+ +++++| .|++|+....... .+.....+..
T Consensus 22 ~~~el~~~a~~~Al~~agl---~p~dID----~vi~g~~~~~~~g-------------------------~~~~~~~~~~ 69 (393)
T cd00826 22 LAHEAGAKAIAAALEPAGV---AAGAVE----EACLGQVLGAGEG-------------------------QNCAQQAAMH 69 (393)
T ss_pred CHHHHHHHHHHHHHHHcCC---CHHHCC----EEEEEEccCCccc-------------------------CcHHHHHHHH
Confidence 3577899999999999999 666777 6888875432110 0000111445
Q ss_pred hhCCCC-cceeecccChHHHHHHHHHHHHHHhCCCCEEEEEeeccccc-hhh------------------------hhHh
Q 012221 205 DLGFMG-PNYSISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAII-PIG------------------------LGGF 258 (468)
Q Consensus 205 ~lgl~G-p~~~v~~acas~l~Al~~A~~~I~~G~~d~~lvgG~e~~~~-p~~------------------------~~~~ 258 (468)
.+|+.+ |.++|+++|+|++.||..|+++|++|++|++||+|+|.+.. +.. +..+
T Consensus 70 ~lg~~~~p~~~V~~~Casg~~al~~A~~~I~sG~~~~vlv~g~e~~s~~~~~~~~~~~~~~~~~~~~~r~~~~~~a~~s~ 149 (393)
T cd00826 70 AGGLQEAPAIGMNNLCGSGLRALALAMQLIAGGDANCILAGGFEKMETSAENNAKEKHIDVLINKYGMRACPDAFALAGQ 149 (393)
T ss_pred cCCCCCCcEEEecchhHHHHHHHHHHHHHHHCCCCCEEEEEeeeccccCcccccccchhHHHHHHhCChhhccHHHHHHH
Confidence 577766 99999999999999999999999999999999999997421 100 0000
Q ss_pred h------hccc-------cccCC--------CCCCCCC------------CCCC------CCCCCeeecceeEEEEecch
Q 012221 259 V------ACRA-------LSQRN--------DDPQTAS------------RPWD------KDRDGFVMGEGAGVLVMESL 299 (468)
Q Consensus 259 ~------~~~~-------l~~~~--------~~~~~~~------------rpfd------~~~~G~v~gEGaaavvL~~~ 299 (468)
. ..+. ++..+ .+|.... +|.. ...|...++|||+++||.++
T Consensus 150 ~~~~~~~~~G~~~e~~a~v~~~~~~~~~~a~~np~a~~~~~~t~e~~~~~~~i~~~~~pl~~~~~~~~~DGAAA~vl~S~ 229 (393)
T cd00826 150 AGAEAAEKDGRFKDEFAKFGVKGRKGDIHSDADEYIQFGDEASLDEIAKLRPAFDKEDFLTAGNACGLNDGAAAAILMSE 229 (393)
T ss_pred HHHHHHHHcCCCHHHEEEEEEecCCCCEEEecCCCCCCCCCCCHHHHhcCCCccCCCCCEechhcCCcCCCeEEEEEecH
Confidence 0 0000 00000 0121111 1111 11233447899999999999
Q ss_pred hHHHhcCC-ceEEEEEEEEEcCCCCC-CCCCC----CChHHHHHHHHHHHHHcCCCCCCcCEEEEccCCCccCCHHHHHH
Q 012221 300 EHAMKRGA-PIIAEYLGGAVNCDAYH-MTDPR----ADGLGVSSCIESSLEDAGVSPEEVNYINAHATSTLAGDLAEINA 373 (468)
Q Consensus 300 ~~A~~~g~-~i~a~i~g~~~~~d~~~-~~~~~----~~~~~~~~~i~~al~~Agl~~~dId~v~~h~~gt~~~D~~E~~a 373 (468)
+.|++.+. ....+|.+.+...+... ...|+ ....+...+++++|++|||+++|||++|+|..++. .|+..
T Consensus 230 ~~a~~l~l~~~~v~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~al~~Agi~~~DID~~Ei~d~Fa~----~~l~~ 305 (393)
T cd00826 230 AEAQKHGLQSKAREIQALEMITDMASTFEDKKVIKMVGGDGPIEAARKALEKAGLGIGDLDLIEAHDAFAA----NACAT 305 (393)
T ss_pred HHHHHcCCcccccccceEEEEEeeeccccCccccccccceeHHHHHHHHHHHcCCCHHHcCeeehhhhhHH----HHHHH
Confidence 99998774 12245555544433221 12222 23344578999999999999999999999998875 44444
Q ss_pred HHHH-hcc-----------------CCCceeeecccccCccccchhHHHHHHHHHHHhcCCcCCCCCCCCCCCCCCcccc
Q 012221 374 IKKV-FKN-----------------TTGIKINATKSMIGHCLGAAGGLEAIATVKAITTGWLHPSINQFNPEPSVEFDTV 435 (468)
Q Consensus 374 l~~~-f~~-----------------~~~~~v~s~k~~~Gh~~~AsG~~~l~~~~~~l~~~~~pp~~~~~~~~~~~~~~~~ 435 (468)
+..+ |.. ..+++.+++-..+||+.||+|+.+++++++||+..
T Consensus 306 ~e~lgl~~~g~~~~~~~~g~~~~~G~~pvN~~GG~la~GhP~gAtG~~~~~e~~~qL~g~-------------------- 365 (393)
T cd00826 306 NEALGLCPEGQGGALVDRGDNTYGGKSIINPNGGAIAIGHPIGASGAAICAELCFELKGE-------------------- 365 (393)
T ss_pred HHHhCCCcccchhhhhhcCccccCCcceECCCCchhhcCCCccccHHHHHHHHHHHHhhh--------------------
Confidence 4443 111 13455556666669999999999999999999863
Q ss_pred cccccccCccEEEEEcccccCeeeEEEEe
Q 012221 436 ANKKQQHEVNVAISNSFGFGGHNSVVAFS 464 (468)
Q Consensus 436 ~~~~~~~~~~~~l~~s~g~gG~n~~~vl~ 464 (468)
....|..+.+++++.+.| |..+++|++
T Consensus 366 ag~~q~~~~~~~~~~~~G--g~g~a~~~~ 392 (393)
T cd00826 366 AGKRQGAGAGLALLCIGG--GGGAAMCIE 392 (393)
T ss_pred hccccCCCcCEEEEEcCC--CceeEEEEe
Confidence 112233345778877666 556667765
|
There are 2 functional different classes: thiolase-I (3-ketoacyl-CoA thiolase) and thiolase-II (acetoacetyl-CoA thiolase). Thiolase-I can cleave longer fatty acid molecules and plays an important role in the beta-oxidative degradation of fatty acids. Thiolase-II has a high substrate specificity. Although it can cleave acetoacyl-CoA, its main function is the synthesis of acetoacyl-CoA from two molecules of acetyl-CoA, which gives it importance in several biosynthetic pathways. |
| >PRK06066 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.7e-21 Score=193.66 Aligned_cols=278 Identities=17% Similarity=0.175 Sum_probs=180.0
Q ss_pred HHHHHHHHHHHHHHHcC-CCCccc-cccccccceEEEeecCCCccchHHHHHHHHHhCCCCcCCcCcchhhhhhhHHHHh
Q 012221 126 CLRYCIVAGKKALEDAD-LGADIS-KKIDKERAGVLVGTGMGGLTVFSDGVQALIEKGHRKITPFFIPYAITNMGSALLA 203 (468)
Q Consensus 126 ~~~l~l~a~~~AL~dAg-l~~~~~-~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~ia 203 (468)
...|+.+|+++||+||| + ++ +++| ++++++. .... ... .....++
T Consensus 25 ~~eL~~eA~~~Al~DAG~l---~~~~dId----~~~~~~~-~~~~------------------~~~-------~~~~~~~ 71 (385)
T PRK06066 25 FREMMFEAASRAYKDAGNI---NPRRDVD----SFISCQE-DFWE------------------GIA-------IADEFAP 71 (385)
T ss_pred HHHHHHHHHHHHHHhcCCC---CChhcCC----EEEEecC-cccC------------------ccc-------ccchhHH
Confidence 36789999999999999 9 54 5676 5666531 1000 000 0011244
Q ss_pred hhhCCC-CcceeecccChHHHHHHHHHHHHHHhCCCCEEEEEeeccccc------------------hhh------hhHh
Q 012221 204 IDLGFM-GPNYSISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAII------------------PIG------LGGF 258 (468)
Q Consensus 204 ~~lgl~-Gp~~~v~~acas~l~Al~~A~~~I~~G~~d~~lvgG~e~~~~------------------p~~------~~~~ 258 (468)
..+|+. .|.+.+ |+|+..++..|+++|++|.+|+|||.|+|.... |.. +..+
T Consensus 72 ~~lg~~~~~~~~v---~~sg~~a~~~A~~aV~sG~~d~vLv~g~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~p~~~~al 148 (385)
T PRK06066 72 DQIGGAMRPTMTV---AGDGLQGLAHAVMHINSGLANVVVVEAHSKPSDILTFSDVVKFAMDPIYVRPIGPPNPHFIAGL 148 (385)
T ss_pred HHcccCCCCeEEE---eCcHHHHHHHHHHHHHcCCCCEEEEEEEeeccCccchhhhhhcccCcceecccCCCcHHHHHHH
Confidence 567774 377776 889999999999999999999999999985321 100 1111
Q ss_pred hhccccccC------------------CCCCCCCC-CCCC--------------CCCCCeeecceeEEEEecchhHHHhc
Q 012221 259 VACRALSQR------------------NDDPQTAS-RPWD--------------KDRDGFVMGEGAGVLVMESLEHAMKR 305 (468)
Q Consensus 259 ~~~~~l~~~------------------~~~~~~~~-rpfd--------------~~~~G~v~gEGaaavvL~~~~~A~~~ 305 (468)
...+.+.+. ..+|.... +|.+ ...|...++|||+++||.+++.|++.
T Consensus 149 ~a~rym~~yG~t~E~lA~Vavk~r~nA~~NP~A~~r~~~t~edvl~S~~ia~Pl~~~d~~~~~DGAaAvvl~s~~~a~~l 228 (385)
T PRK06066 149 DAVKFMSRKGITREDLALVVEKNKKAGLSNPRASYASNISLEDVLSSEYVVYPLTELDIAPFVDGAIVVVLASEEVAKKL 228 (385)
T ss_pred HHHHHHHHHCcCHHHHHHHHHHHHHHHhcCChhhcCCCCCHHHHhcCCcccCCchhhccCCCCCceEEEEEeCHHHHHhc
Confidence 111111110 01222111 0111 01245568999999999999999988
Q ss_pred CCceEEEEEEEEEcCCCCCCCCCCC-ChHHHHHHHHHHHHHcCCC--CCCcCEEEEccCCCccCCHHHHHHHHHHh-c--
Q 012221 306 GAPIIAEYLGGAVNCDAYHMTDPRA-DGLGVSSCIESSLEDAGVS--PEEVNYINAHATSTLAGDLAEINAIKKVF-K-- 379 (468)
Q Consensus 306 g~~i~a~i~g~~~~~d~~~~~~~~~-~~~~~~~~i~~al~~Agl~--~~dId~v~~h~~gt~~~D~~E~~al~~~f-~-- 379 (468)
+.++. +|+|++...+.......+. .......+.+++|++|||+ ++|||++|.|++++. .|+..++.+- .
T Consensus 229 ~~~pv-~I~g~g~~~~~~~~~~~~~~~~~~~~~Aa~~a~~~AGi~~p~~DiD~~ei~D~Ft~----~~l~~~e~lG~~~~ 303 (385)
T PRK06066 229 TDDPV-WIKGIGWSTESSNLETAELGKANYMRIAADMAYKMAGIESPRKEVDAAEVDDRYSY----KELQHIEALRLSEE 303 (385)
T ss_pred CCCCE-EEEEEEEecCCcccccccccccHHHHHHHHHHHHHcCCCCCHHHCcEEEEecCChH----HHHHHHHHcCCCCC
Confidence 87765 8999988765333221111 2233457999999999998 699999999999986 3333333321 0
Q ss_pred ---------------cCCCceeeecccccCccccchhHHHHHHHHHHHhcCCcCCCCCCCCCCCCCCcccccccccccCc
Q 012221 380 ---------------NTTGIKINATKSMIGHCLGAAGGLEAIATVKAITTGWLHPSINQFNPEPSVEFDTVANKKQQHEV 444 (468)
Q Consensus 380 ---------------~~~~~~v~s~k~~~Gh~~~AsG~~~l~~~~~~l~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (468)
.+-+++.+++-...||+.||+|+.+++++++||+.. ....| .+.
T Consensus 304 Ge~~~~v~~G~~~~~G~~PvN~~GG~la~Ghp~gatG~~~v~e~~~QL~g~--------------------Ag~rQ-~~a 362 (385)
T PRK06066 304 PEKDSLLREGNFDPQGELPVNPSGGHLAKGVPLEASGLSLLLDAVEYLRGE--------------------AGARQ-GKA 362 (385)
T ss_pred CchHHHHHCCCCCCCCCccccCCCchhcCCCccchhHHHHHHHHHHHHccc--------------------ccccC-CCC
Confidence 012355555555569999999999999999999874 12334 567
Q ss_pred cEEEEEccc--ccCeeeEEEEee
Q 012221 445 NVAISNSFG--FGGHNSVVAFSA 465 (468)
Q Consensus 445 ~~~l~~s~g--~gG~n~~~vl~~ 465 (468)
+++++.+.| +++..+.+|+++
T Consensus 363 ~~~l~~~~gg~~~~~~~v~v~~~ 385 (385)
T PRK06066 363 ERAVVASWRGIPTLTGSVVVVER 385 (385)
T ss_pred cEEEEcCCCccCCccEEEEEEeC
Confidence 888888876 556777777764
|
|
| >PRK06025 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.6e-21 Score=193.82 Aligned_cols=271 Identities=17% Similarity=0.209 Sum_probs=190.6
Q ss_pred HHHHHHHHHHHHHHHcCCCCccccccccccceEEEeecCCCccchHHHHHHHHHhCCCCcCCcCcchhhhhhhHHHHhhh
Q 012221 126 CLRYCIVAGKKALEDADLGADISKKIDKERAGVLVGTGMGGLTVFSDGVQALIEKGHRKITPFFIPYAITNMGSALLAID 205 (468)
Q Consensus 126 ~~~l~l~a~~~AL~dAgl~~~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~ia~~ 205 (468)
...|+..+.+++|+++|+ ++.++| -|++|+...... ....++...+..
T Consensus 29 ~~~L~~~~~~~~l~r~~i---~~~~id----~vi~G~~~~~g~-------------------------~g~n~aR~~al~ 76 (417)
T PRK06025 29 PQHLAATVLKALAERNGL---NTADVD----DIIWSTSSQRGK-------------------------QGGDLGRMAALD 76 (417)
T ss_pred HHHHHHHHHHHHHHhcCC---CHHHCC----EEEEEcCCCcCc-------------------------ccCcHHHHHHHh
Confidence 356788899999999999 556676 588887532110 001134555556
Q ss_pred hCC--CCcceeecccChHHHHHHHHHHHHHHhCCCCEEEEEeecccc-chhhhh-----H-----hhh------------
Q 012221 206 LGF--MGPNYSISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAI-IPIGLG-----G-----FVA------------ 260 (468)
Q Consensus 206 lgl--~Gp~~~v~~acas~l~Al~~A~~~I~~G~~d~~lvgG~e~~~-~p~~~~-----~-----~~~------------ 260 (468)
-|| +-|.+||+..|+||+.||.+|++.|+.|++|++|+||+|++. .|+.+. + ...
T Consensus 77 aglp~~vp~~tvnr~C~Sgl~ai~~aa~~I~~G~~~~~laGG~EsmS~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (417)
T PRK06025 77 AGYDIKASGVTLDRFCGGGITSVNLAAAQIMSGMEDLVIAGGTEMMSYTAAMAAEDMAAGKPPLGMGSGNLRLRALHPQS 156 (417)
T ss_pred CCCCCCCCeeeeccccchHHHHHHHHHHHHHcCCCCEEEEeeeeccCCCcccccccccCCCCcccccccCcccccccCCC
Confidence 666 459999999999999999999999999999999999999854 232000 0 000
Q ss_pred ------------------------------------cccccc--------CC---CCCCCC------------CCC-CCC
Q 012221 261 ------------------------------------CRALSQ--------RN---DDPQTA------------SRP-WDK 280 (468)
Q Consensus 261 ------------------------------------~~~l~~--------~~---~~~~~~------------~rp-fd~ 280 (468)
.+.+.. .. .+.+.. .+| |+.
T Consensus 157 ~Mg~~ae~~a~~~~isRe~~D~~A~~Sh~rA~~A~~~G~f~~eIvPv~~~~~~~~~~~De~~R~~~t~e~la~L~p~F~~ 236 (417)
T PRK06025 157 HQGVCGDAIATMEGITREALDALGLESQRRAARAIKEGRFDKSLVPVYRDDGSVALDHEEFPRPQTTAEGLAALKPAFTA 236 (417)
T ss_pred CHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHcCCCcCeEeeEEcCCCCEEecCCCCCCCCCCHHHHcCCCCCccc
Confidence 000000 00 000111 123 331
Q ss_pred ------CCCCe-------------------------eecceeEEEEecchhHHHhcCCceEEEEEEEEEcCCCCCCCCCC
Q 012221 281 ------DRDGF-------------------------VMGEGAGVLVMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPR 329 (468)
Q Consensus 281 ------~~~G~-------------------------v~gEGaaavvL~~~~~A~~~g~~i~a~i~g~~~~~d~~~~~~~~ 329 (468)
..+|. .++|||+++||++++.|+++|.+++++|.|++...+...
T Consensus 237 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~vTagNss~~sDGAAAvVL~See~A~~lg~~p~a~I~g~~~a~~~p~----- 311 (417)
T PRK06025 237 IADYPLDDKGTTYRGLINQKYPDLEIKHVHHAGNSSGVVDGAAALLLASKAYAEKHGLKPRARIVAMANMGDDPT----- 311 (417)
T ss_pred cccccccCCccccccccccccccccccccccccccCCCCcceEEEEEecHHHHHHcCCCCcEEEEEEEEecCCch-----
Confidence 01344 269999999999999999999999999999998865322
Q ss_pred CChHHHHHHHHHHHHHcCCCCCCcCEEEEccCCCccCCHHHHHHHHHHhc-cCCCceeeecccccCccccchhHHHHHHH
Q 012221 330 ADGLGVSSCIESSLEDAGVSPEEVNYINAHATSTLAGDLAEINAIKKVFK-NTTGIKINATKSMIGHCLGAAGGLEAIAT 408 (468)
Q Consensus 330 ~~~~~~~~~i~~al~~Agl~~~dId~v~~h~~gt~~~D~~E~~al~~~f~-~~~~~~v~s~k~~~Gh~~~AsG~~~l~~~ 408 (468)
..+.+...+++++|+++|++++|||++|.|..++.. + .+..+.++ ...++++++.+..+||+.|++|++.++.+
T Consensus 312 ~~~~~p~~Ai~~aL~~AGl~~~DID~~ei~eaFa~~----~-l~~~~~lg~~~~~vN~~GG~ia~GHp~GaTGa~~v~~l 386 (417)
T PRK06025 312 LMLNAPVPAAKKVLAKAGLTKDDIDLWEINEAFAVV----A-EKFIRDLDLDRDKVNVNGGAIALGHPIGATGSILIGTV 386 (417)
T ss_pred hhcccHHHHHHHHHHHcCCCHHHCcEEEEchHHHHH----H-HHHHHHcCCChhhccccCCHHhcCCchhHHHHHHHHHH
Confidence 223344679999999999999999999999554421 1 22333333 23578999999999999999999999999
Q ss_pred HHHHhcCCcCCCCCCCCCCCCCCcccccccccccCccEEEEEcccccCeeeEEEEee
Q 012221 409 VKAITTGWLHPSINQFNPEPSVEFDTVANKKQQHEVNVAISNSFGFGGHNSVVAFSA 465 (468)
Q Consensus 409 ~~~l~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~g~gG~n~~~vl~~ 465 (468)
+.+|+++ +.+++++.-.+.||...++||++
T Consensus 387 l~qL~~~---------------------------g~~~Gl~~~c~~GG~g~A~lle~ 416 (417)
T PRK06025 387 LDELERR---------------------------GLKRGLVTMCAAGGMAPAIIIER 416 (417)
T ss_pred HHHHHHh---------------------------CCCeEEEEEEeeccceeEEEEEe
Confidence 9999762 12456777778899999999986
|
|
| >TIGR02446 FadI fatty oxidation complex, beta subunit FadI | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.1e-21 Score=196.17 Aligned_cols=249 Identities=18% Similarity=0.270 Sum_probs=171.0
Q ss_pred HHHHHHHHHHHHHHHcCCCCccccccccccceEEEeecCCCccchHHHHHHHHHhCCCCcCCcCcchhhhhhhHHHHhhh
Q 012221 126 CLRYCIVAGKKALEDADLGADISKKIDKERAGVLVGTGMGGLTVFSDGVQALIEKGHRKITPFFIPYAITNMGSALLAID 205 (468)
Q Consensus 126 ~~~l~l~a~~~AL~dAgl~~~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~ia~~ 205 (468)
...|+.+++++||+|+|+ +++++| .+++|+..+... ...++..++..
T Consensus 31 ~~~L~~~a~~~al~~agl---~~~~Id----~vi~G~~~~~~~--------------------------~~~~ar~~~l~ 77 (430)
T TIGR02446 31 AVDLGKMVVSELLARSEI---DPKLIE----QLVFGQVVQMPE--------------------------APNIAREIVLG 77 (430)
T ss_pred HHHHHHHHHHHHHHHcCC---CHHHCC----EEEEEeccCcCc--------------------------cchHHHHHHHh
Confidence 467899999999999999 666777 588886432100 01134555666
Q ss_pred hCCC-C-cceeecccChHHHHHHHHHHHHHHhCCCCEEEEEeeccccc-hhhhh----------------H---------
Q 012221 206 LGFM-G-PNYSISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAII-PIGLG----------------G--------- 257 (468)
Q Consensus 206 lgl~-G-p~~~v~~acas~l~Al~~A~~~I~~G~~d~~lvgG~e~~~~-p~~~~----------------~--------- 257 (468)
.|+. + |.++|+.+|+||+.|+.+|+++|++|++|++||+|+|++.. |..+. .
T Consensus 78 aGl~~~~p~~~V~~~CaSG~~A~~~a~~~I~sG~~dvvla~G~E~mS~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (430)
T TIGR02446 78 TGMNVHTDAYSVTRACATSFQSAVNVAESIMAGAIDIGIAGGADSSSVLPIGVSKKLAASLVDLNKARTLGQKLKVFSRL 157 (430)
T ss_pred CCCCCCCchhhhhhhhhHHHHHHHHHHHHHHCCCCCEEEEeeeEcccCCcccccccccccccccccccccCccccccccc
Confidence 7886 4 99999999999999999999999999999999999998632 21100 0
Q ss_pred -----h--h----------hccccc-----cC------------------C----------------CCCCCCC------
Q 012221 258 -----F--V----------ACRALS-----QR------------------N----------------DDPQTAS------ 275 (468)
Q Consensus 258 -----~--~----------~~~~l~-----~~------------------~----------------~~~~~~~------ 275 (468)
+ . .+.... +. . .+|....
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~m~~~ae~~a~~ygisre~~d~~Avksh~~a~~A~~~g~~~~ei~p~~~np~a~~~~~D~~ 237 (430)
T TIGR02446 158 GLKDLMPVPPAVAEYSTGLSMGQTAEQMAKTYGITRAEQDALAHRSHTLASQAWRDGKLAGEVMTAFPPPYKQWIAEDNN 237 (430)
T ss_pred hhhhhcccCcccccccCCCcHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHcCCCCceeeeeeecCCceEecccCC
Confidence 0 0 000000 00 0 0111000
Q ss_pred -C------------C-CC------CCCCCeeecceeEEEEecchhHHHhcCCceEEEEEEEEEcCCCCCCCCCCCChHHH
Q 012221 276 -R------------P-WD------KDRDGFVMGEGAGVLVMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGV 335 (468)
Q Consensus 276 -r------------p-fd------~~~~G~v~gEGaaavvL~~~~~A~~~g~~i~a~i~g~~~~~d~~~~~~~~~~~~~~ 335 (468)
| | |+ ...|...++|||+++||.+++.|++.+.++.++|++++....... .. .....
T Consensus 238 ~r~~~t~e~~~~~~~i~~p~~g~lt~~~~~~~~DGAaA~il~se~~A~~l~~~p~~~i~~~~~~~~~~~-~~---~~~~~ 313 (430)
T TIGR02446 238 IRHNSTLAGYAKLRPAFDRKHGSVTAANSTPLTDGAAAVILMREGRAKELGMEPLGYIRSYAFTAIDVW-QD---MLMGP 313 (430)
T ss_pred CCCCCCHHHHhcCCceecCCCCceechhcCCCCCceEEEEEecHHHHHHcCCCceEEEEEEEeeccCch-Hh---hcccH
Confidence 1 1 11 022344579999999999999999988888899999886632110 00 11223
Q ss_pred HHHHHHHHHHcCCCCCCcCEEEEccCCCccCCHHHHHHHHHH----h-----------cc--CCCceeeecccccCcccc
Q 012221 336 SSCIESSLEDAGVSPEEVNYINAHATSTLAGDLAEINAIKKV----F-----------KN--TTGIKINATKSMIGHCLG 398 (468)
Q Consensus 336 ~~~i~~al~~Agl~~~dId~v~~h~~gt~~~D~~E~~al~~~----f-----------~~--~~~~~v~s~k~~~Gh~~~ 398 (468)
..+++++|++||++++|||++|.|.+++. .|+..++.+ | +. ..++++++.-..+||+.|
T Consensus 314 ~~a~~~al~~Agl~~~Did~~Ei~daFa~----~~l~~~e~lg~~~~~~~~~g~~~~~G~~~~~pvN~~GG~la~GhP~g 389 (430)
T TIGR02446 314 SYATPLALQRAGLALSDLTLIDMHEAFAA----QTLANVQMFASDKFAQENLGRSKAMGEIDMSKFNVLGGSIAYGHPFA 389 (430)
T ss_pred HHHHHHHHHHcCCCHHHCCEEEeccccHH----HHHHHHHHhcCcchhhhcccccccCCCCCCCccCCCCCHHhcCCCcc
Confidence 57899999999999999999999999886 444444443 1 11 125667777777799999
Q ss_pred chhHHHHHHHHHHHhcC
Q 012221 399 AAGGLEAIATVKAITTG 415 (468)
Q Consensus 399 AsG~~~l~~~~~~l~~~ 415 (468)
|+|+.+++++++||+.+
T Consensus 390 atG~~~v~e~~~qL~g~ 406 (430)
T TIGR02446 390 ATGARMITQTLRELKRR 406 (430)
T ss_pred ccHHHHHHHHHHHHhhc
Confidence 99999999999999863
|
This subunit of the FadJI complex has acetyl-CoA C-acyltransferase (EC 2.3.1.16) activity, and is also known as beta-ketothiolase and fatty oxidation complex, beta subunit, and YfcY. This protein is almost always located adjacent to FadJ (TIGR02440). The FadJI complex is needed for anaerobic beta-oxidation of short-chain fatty acids in E. coli. |
| >PRK06690 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.6e-21 Score=188.97 Aligned_cols=267 Identities=18% Similarity=0.258 Sum_probs=186.7
Q ss_pred HHHHHHHHHHHHHHcCCCCccccccccccceEEEeecCCCccchHHHHHHHHHhCCCCcCCcCcchhhhhhhHHHHhhhh
Q 012221 127 LRYCIVAGKKALEDADLGADISKKIDKERAGVLVGTGMGGLTVFSDGVQALIEKGHRKITPFFIPYAITNMGSALLAIDL 206 (468)
Q Consensus 127 ~~l~l~a~~~AL~dAgl~~~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~ia~~l 206 (468)
..|+..+.+++++ |+ + .++| .|++|+..+.. .+ .+..++...
T Consensus 26 ~~L~~~a~~~~~~--gi---~-~~Id----~vi~G~~~~~~---------------------------~~-~~r~~~~~~ 67 (361)
T PRK06690 26 QQLAAPLLTFLSK--GM---E-REID----DVILGNVVGPG---------------------------GN-VARLSALEA 67 (361)
T ss_pred HHHHHHHHHHHHc--cc---h-hhcC----EEEEEecCCCc---------------------------ch-HHHHHHHHc
Confidence 5678888888744 88 3 4566 68888753221 11 133466677
Q ss_pred CCC-C-cceeecccChHHHHHHHHHHHHHHhCCCCEEEEEeeccccc-hhh----h---------hHhhhccc-----cc
Q 012221 207 GFM-G-PNYSISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAII-PIG----L---------GGFVACRA-----LS 265 (468)
Q Consensus 207 gl~-G-p~~~v~~acas~l~Al~~A~~~I~~G~~d~~lvgG~e~~~~-p~~----~---------~~~~~~~~-----l~ 265 (468)
|+. + |+++|+++|+||+.|+..|+++|++|++|++||||+|.+.. |+. + .+....+. ++
T Consensus 68 Gl~~~~p~~tV~~~CaSG~~Ai~~a~~~I~sG~~d~~l~gG~E~ms~~p~~~~~~~~~~~~~~~~~~~~a~~~~~~ygit 147 (361)
T PRK06690 68 GLGLHIPGVTIDRQCGAGLEAIRTACHFIQGGAGKCYIAGGVESTSTSPFQNRARFSPETIGDPDMGVAAEYVAERYNIT 147 (361)
T ss_pred CCCCCCCceehhhhhhHHHHHHHHHHHHHHCCCCCEEEEeccccccCCCcccccccCcccccCccHHHHHHHHHHHhCCC
Confidence 876 4 99999999999999999999999999999999999998542 210 0 00000000 00
Q ss_pred cC----------------CCCCC--------------------------CCCCC-CCC-----CCCCeeecceeEEEEec
Q 012221 266 QR----------------NDDPQ--------------------------TASRP-WDK-----DRDGFVMGEGAGVLVME 297 (468)
Q Consensus 266 ~~----------------~~~~~--------------------------~~~rp-fd~-----~~~G~v~gEGaaavvL~ 297 (468)
+. ..+|. ...+| |+. ..+...++|||+++||+
T Consensus 148 re~~d~~A~~s~k~a~~a~~n~~~~~ei~~v~~~~d~~~r~~~~~e~ll~~l~p~~~~~g~lt~~~~~~~~DGAaAvvl~ 227 (361)
T PRK06690 148 REMQDEYACLSYKRTLQALEKGYIHEEILSFNGLLDESIKKEMNYERIIKRTKPAFLHNGTVTAGNSCGVNDGACAVLVM 227 (361)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCceecccCccccccCCCCCHHHHhhcCCCcccCCCceeccccCCCCCCeEEEEEe
Confidence 00 00110 00012 221 11223469999999999
Q ss_pred chhHHHhcCCceEEEEEEEEEcCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCcCEEEEccCCCccCCHHHHHHHHHH
Q 012221 298 SLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAGVSPEEVNYINAHATSTLAGDLAEINAIKKV 377 (468)
Q Consensus 298 ~~~~A~~~g~~i~a~i~g~~~~~d~~~~~~~~~~~~~~~~~i~~al~~Agl~~~dId~v~~h~~gt~~~D~~E~~al~~~ 377 (468)
+++.|++.+.++.++|.|++..... +.....+...+++++|+++|++++|||++|.|...+. .+...++..
T Consensus 228 s~e~A~~lg~~p~~~i~~~~~~~~~-----~~~~~~~~~~a~~~al~~Agl~~~Did~~ei~eafa~----~~~~~~e~l 298 (361)
T PRK06690 228 EEGQARKLGYKPVLRFVRSAVVGVD-----PNLPGTGPIFAVNKLLNEMNMKVEDIDYFEINEAFAS----KVVACAKEL 298 (361)
T ss_pred cHHHHHHcCCCceEEEEEEEEeccC-----cccchhHHHHHHHHHHHHcCCCHHHcCEeeecchhHH----HHHHHHHhc
Confidence 9999999999988899998876421 2223456788999999999999999999999988775 333333332
Q ss_pred hccCCCceeeecccccCccccchhHHHHHHHHHHHhcCCcCCCCCCCCCCCCCCcccccccccccCccEEEEEcccccCe
Q 012221 378 FKNTTGIKINATKSMIGHCLGAAGGLEAIATVKAITTGWLHPSINQFNPEPSVEFDTVANKKQQHEVNVAISNSFGFGGH 457 (468)
Q Consensus 378 f~~~~~~~v~s~k~~~Gh~~~AsG~~~l~~~~~~l~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~g~gG~ 457 (468)
--...++++++++..+||+.|++|+++++.++.+|+++ ..+++++....-||.
T Consensus 299 gl~~~~vn~~GG~la~Ghp~GatG~~~~~~~~~ql~~~---------------------------~~~~g~~~~c~~gG~ 351 (361)
T PRK06690 299 QIPYEKLNVNGGAIALGHPYGASGAMLVTRLFYQAKRE---------------------------DMKYGIATLGIGGGI 351 (361)
T ss_pred CCCchhcccCCcHHhccCchhhhHHHHHHHHHHHHHHh---------------------------CCCEEEEEEcccCcc
Confidence 11235688899999999999999999999999999762 135677777778889
Q ss_pred eeEEEEeecC
Q 012221 458 NSVVAFSAFK 467 (468)
Q Consensus 458 n~~~vl~~~~ 467 (468)
..++|+++.+
T Consensus 352 g~a~~~e~~~ 361 (361)
T PRK06690 352 GLALLFEKVE 361 (361)
T ss_pred eeEEEEEecC
Confidence 9999998753
|
|
| >PRK07515 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.8e-21 Score=193.71 Aligned_cols=252 Identities=21% Similarity=0.239 Sum_probs=165.8
Q ss_pred HHHHHHHHHHHHHHHHcCCCCccccccccccceEEEeecCCCccchHHHHHHHHHhCCCCcCCcCcchhhhhhhHHHHhh
Q 012221 125 DCLRYCIVAGKKALEDADLGADISKKIDKERAGVLVGTGMGGLTVFSDGVQALIEKGHRKITPFFIPYAITNMGSALLAI 204 (468)
Q Consensus 125 ~~~~l~l~a~~~AL~dAgl~~~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~ia~ 204 (468)
....|+.+|+++||+++|+ ++++++ .+++++.... ..++ ..+..++.
T Consensus 94 ~~~~la~~Aa~~aL~~agl---~~~~Id----~li~~~~~~~---------------------~~~p-----~~a~~v~~ 140 (372)
T PRK07515 94 IQAEMGVAAARQALARAGR---TAEDID----AVIVACSNMQ---------------------RAYP-----AMAIEIQQ 140 (372)
T ss_pred hHHHHHHHHHHHHHHHcCC---CHHHCC----EEEEECCCCC---------------------CCCc-----HHHHHHHH
Confidence 4467999999999999999 556666 5777654211 0111 12567888
Q ss_pred hhCCCCcceeecccChHHHHHHHHHHHHHHhCCCCEEEEEeeccccchhhhhHhhhccccccCCCCCCCCCCCCCCCCCC
Q 012221 205 DLGFMGPNYSISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWDKDRDG 284 (468)
Q Consensus 205 ~lgl~Gp~~~v~~acas~l~Al~~A~~~I~~G~~d~~lvgG~e~~~~p~~~~~~~~~~~l~~~~~~~~~~~rpfd~~~~G 284 (468)
.+|+++++++++.+|+|++.||..|+++|++|.+|.|||+|+|.+. .. . -|+....+
T Consensus 141 ~Lgl~~~~~~v~~aCasg~~al~~A~~~i~~g~~~~vLvv~~e~~s-~~----------~------------~~~d~~~~ 197 (372)
T PRK07515 141 ALGIEGFAFDMNVACSSATFGIQTAANAIRSGSARRVLVVNPEICS-GH----------L------------NFRDRDSH 197 (372)
T ss_pred hcCCCCcEEEecchhHHHHHHHHHHHHHHHcCCCCEEEEEeeeccc-cc----------c------------cccCCCCC
Confidence 8999999999999999999999999999999999999999999621 10 0 02222357
Q ss_pred eeecceeEEEEecchhHHHhcC-CceEEEEEEE------------EEcCCCCCCCCCCC----ChHH--------HHHHH
Q 012221 285 FVMGEGAGVLVMESLEHAMKRG-APIIAEYLGG------------AVNCDAYHMTDPRA----DGLG--------VSSCI 339 (468)
Q Consensus 285 ~v~gEGaaavvL~~~~~A~~~g-~~i~a~i~g~------------~~~~d~~~~~~~~~----~~~~--------~~~~i 339 (468)
+++||||+|+||++.+.+.+++ ..++...... ....+..+...+.. ++.. +.++|
T Consensus 198 ~lfGDgAaA~vL~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i 277 (372)
T PRK07515 198 FIFGDVATAVIVERADTATSAGGFEILGTRLFTQFSNNIRNNFGFLNRADPEGIGARDKLFVQEGRKVFKEVCPMVAEHI 277 (372)
T ss_pred EEecCccEEEEEeeccccccCCCceEEEEEeecccccceecCCCCCCCCCccccccccceEEeccHHHHHHHHHHHHHHH
Confidence 9999999999999876553322 2454443111 00011111111111 3332 56789
Q ss_pred HHHHHHcCCCCCCcCEEEEccCCCccCCHHHHHHHHHHhccC-CCceeeecccccCccccchhHHHHHHHHHHHhcCCcC
Q 012221 340 ESSLEDAGVSPEEVNYINAHATSTLAGDLAEINAIKKVFKNT-TGIKINATKSMIGHCLGAAGGLEAIATVKAITTGWLH 418 (468)
Q Consensus 340 ~~al~~Agl~~~dId~v~~h~~gt~~~D~~E~~al~~~f~~~-~~~~v~s~k~~~Gh~~~AsG~~~l~~~~~~l~~~~~p 418 (468)
+++|+++|++++|||||.+|.+++...|.+ ++++|+.. ..-.....-..+||+.+|+=.+.+..+ . +.+
T Consensus 278 ~~~L~~~gl~~~dId~~~~Hq~~~~~~d~~----~~~llg~~~~~~~~~~~~~~~GNt~sasi~~~L~~~----~-~~~- 347 (372)
T PRK07515 278 VEHLAENGLTPADVKRFWLHQANINMNQLI----GKKVLGRDATPEEAPVILDEYANTSSAGSIIAFHKH----S-DDL- 347 (372)
T ss_pred HHHHHHcCCCHHHCCEEEECCCCHHHHHHH----HHHhccCCCChhhceEeHHhcCCchhhHHHHHHHHH----h-ccC-
Confidence 999999999999999999999999987765 34445421 111122335778998888765544432 1 111
Q ss_pred CCCCCCCCCCCCCcccccccccccCccEEEEEcccccCeeeEEEEee
Q 012221 419 PSINQFNPEPSVEFDTVANKKQQHEVNVAISNSFGFGGHNSVVAFSA 465 (468)
Q Consensus 419 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~g~gG~n~~~vl~~ 465 (468)
.+-+.++..+||.|-+-.+++|++
T Consensus 348 -----------------------~~Gd~vll~~~G~G~~~~~~ll~~ 371 (372)
T PRK07515 348 -----------------------AAGDLGVICSFGAGYSIGSVIVRK 371 (372)
T ss_pred -----------------------CCCCEEEEEEecccHHHHHHHhcc
Confidence 012356667888876666666654
|
|
| >PRK07855 lipid-transfer protein; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.9e-19 Score=178.84 Aligned_cols=269 Identities=19% Similarity=0.121 Sum_probs=173.1
Q ss_pred HHHHHHHHHHHHHHcCCCCccccccccccceEEEeecCCCccchHHHHHHHHHhCCCCcCCcCcchhhhhhhHHHHhhhh
Q 012221 127 LRYCIVAGKKALEDADLGADISKKIDKERAGVLVGTGMGGLTVFSDGVQALIEKGHRKITPFFIPYAITNMGSALLAIDL 206 (468)
Q Consensus 127 ~~l~l~a~~~AL~dAgl~~~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~ia~~l 206 (468)
..|+.+|+++||+|||+ +++++| ++++++. .. .. ...++..+
T Consensus 25 ~~L~~eA~~~Al~DAgl---~~~dID----~~~~~~~-~~-----------------------~~-------~~~l~~~l 66 (386)
T PRK07855 25 LRLACEAVLAALDDAGL---APSDVD----GLVTFTM-DT-----------------------NP-------EIAVARAL 66 (386)
T ss_pred HHHHHHHHHHHHHHcCC---CHHHCC----EEEEecC-cc-----------------------cc-------HHHHHHHC
Confidence 56899999999999999 667777 5554321 00 00 12367779
Q ss_pred CCCC--cceeecccChHHHHHHHHHHHHHHhCCCCEEEEEee--ccc---cc---------------------hhh----
Q 012221 207 GFMG--PNYSISTACATSNYCFYAAANHIRRGEADLMLAGGT--EAA---II---------------------PIG---- 254 (468)
Q Consensus 207 gl~G--p~~~v~~acas~l~Al~~A~~~I~~G~~d~~lvgG~--e~~---~~---------------------p~~---- 254 (468)
|+++ +...|.++|+|+..+|..|+++|++|.||+|||.|. +.. .. |..
T Consensus 67 Gl~~~~~~~~v~~gg~sg~~~~~~A~~~I~sG~~d~vLv~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 146 (386)
T PRK07855 67 GIGELKFFSRIHYGGGAACATVQQAAMAVATGVADVVVCYRAFNERSGMRFGQGQTGLAENPTSTGVDYGWSYPHGLLTP 146 (386)
T ss_pred CCCCCcceeeecCCcHHHHHHHHHHHHHHHCCCCCEEEEEeecccccccccccccccccccccccccchhhhhhcCCCCh
Confidence 9976 445789999999999999999999999999999988 221 00 000
Q ss_pred --hhHhhhccccccC------------------CCCCCCCC--CCCCCC--------------CCCeeecceeEEEEecc
Q 012221 255 --LGGFVACRALSQR------------------NDDPQTAS--RPWDKD--------------RDGFVMGEGAGVLVMES 298 (468)
Q Consensus 255 --~~~~~~~~~l~~~------------------~~~~~~~~--rpfd~~--------------~~G~v~gEGaaavvL~~ 298 (468)
+..+...+.+.+. ..+|.... +|++.+ -|...++|||+++||.+
T Consensus 147 ~~~~al~a~~ym~~~G~t~e~lA~vavk~~~~A~~NP~A~~~~~~~t~e~vl~s~~Ia~Pl~~~d~~~~sDGAaAvvl~s 226 (386)
T PRK07855 147 AAWVAMLARRYMHEYGATSEDFGRVAVADRKHAATNPKAWFYGRPITLEDHQNSRWIAEPLRLLDCCQESDGAVALVVTS 226 (386)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhcChHhhhcCCCCCHHHHhcCCcccCCchhhhcCCcCCceEEEEEec
Confidence 0000000000000 11232221 122211 24555899999999999
Q ss_pred hhHHHhcCCceEEEEEEEEEcCCCCCCC-----CCCC-ChHHHHHHHHHHHHHcCCCCCCcCEEEEccCCCccCCHHHHH
Q 012221 299 LEHAMKRGAPIIAEYLGGAVNCDAYHMT-----DPRA-DGLGVSSCIESSLEDAGVSPEEVNYINAHATSTLAGDLAEIN 372 (468)
Q Consensus 299 ~~~A~~~g~~i~a~i~g~~~~~d~~~~~-----~~~~-~~~~~~~~i~~al~~Agl~~~dId~v~~h~~gt~~~D~~E~~ 372 (468)
++.|++.+.++ .+|+|++...+..... .++. .......+++++|++|||+++|||++|.|++++. .|+.
T Consensus 227 ee~A~~l~~~p-v~I~g~~~~~~~~~~~~~~~~~~d~~~~~~~~~aa~~a~~~AGi~~~DiDv~El~D~Ft~----~~l~ 301 (386)
T PRK07855 227 AERARDLKQRP-AVIKAAAQGSGADQYMMTSYYRDDITGLPEMGLVARQLWAQSGLGPADIDTAILYDHFTP----FVLM 301 (386)
T ss_pred HHHHhhCCCCC-EEEEEEEEecCCccccccccccccccccchHHHHHHHHHHHcCCCHHHCcEEEeccCCcH----HHHH
Confidence 99998887666 5899998866433111 1111 1234457899999999999999999999999986 4444
Q ss_pred HHHHH-----------hcc-----CCCceeeecccc--cCccccchhHHHHHHHHHHHhcCCcCCCCCCCCCCCCCCccc
Q 012221 373 AIKKV-----------FKN-----TTGIKINATKSM--IGHCLGAAGGLEAIATVKAITTGWLHPSINQFNPEPSVEFDT 434 (468)
Q Consensus 373 al~~~-----------f~~-----~~~~~v~s~k~~--~Gh~~~AsG~~~l~~~~~~l~~~~~pp~~~~~~~~~~~~~~~ 434 (468)
.++.+ +.+ ...+||+...+. .||+. |+.+++++++||+..-
T Consensus 302 ~~E~lG~~~~Ge~~~~v~~G~~~~~G~lPvN~sGGll~~gh~~---G~~~i~E~~~QLrG~a------------------ 360 (386)
T PRK07855 302 QLEELGFCGRGEAKDFIADGALELGGRLPINTHGGQLGEAYIH---GMNGIAEAVRQLRGTS------------------ 360 (386)
T ss_pred HHHHcCCCCCCcHHHHHHCCCcccCCcccccCCCcccccCchh---hHHHHHHHHHHHhCCC------------------
Confidence 43333 111 234666444444 48866 8999999999999741
Q ss_pred ccccccccCccEEEEEcccccCeeeEEEE
Q 012221 435 VANKKQQHEVNVAISNSFGFGGHNSVVAF 463 (468)
Q Consensus 435 ~~~~~~~~~~~~~l~~s~g~gG~n~~~vl 463 (468)
..|..+.+++++++.|-. ..+++||
T Consensus 361 ---~~QV~~a~~gl~~~~Gg~-~~~~~~~ 385 (386)
T PRK07855 361 ---VNQVPGVENVLVTAGTGV-PTSGLIL 385 (386)
T ss_pred ---cccCCCCcEEEEECCCCc-cceeEEe
Confidence 113345678888876633 3345655
|
|
| >KOG1406 consensus Peroxisomal 3-ketoacyl-CoA-thiolase P-44/SCP2 [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.8e-21 Score=172.91 Aligned_cols=278 Identities=23% Similarity=0.336 Sum_probs=189.1
Q ss_pred HHHHHHHHHHHHHcCCCCccccccccccceEEEeecCCCccchHHHHHHHHHhCCCCcCCcCcchhhhhhhHHHHhhhhC
Q 012221 128 RYCIVAGKKALEDADLGADISKKIDKERAGVLVGTGMGGLTVFSDGVQALIEKGHRKITPFFIPYAITNMGSALLAIDLG 207 (468)
Q Consensus 128 ~l~l~a~~~AL~dAgl~~~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~ia~~lg 207 (468)
.++-+|...||+|+++ ..++++..-+|-++|-+.-++ |.-+.+|
T Consensus 31 d~a~ea~tkal~da~i---kys~vqqa~vgyvfgdstcgq---------------------------------raiyevg 74 (408)
T KOG1406|consen 31 DFAKEAITKALQDAGI---KYSEVQQAVVGYVFGDSTCGQ---------------------------------RAIYEVG 74 (408)
T ss_pred hHHHHHHHHHHHhcCC---CHHHHHhhhheeeecCCccch---------------------------------HHHHhcc
Confidence 3677899999999999 777888888888887543321 2334589
Q ss_pred CCC-cceeecccChHHHHHHHHHHHHHHhCCCCEEEEEeecccc------------------------------chhhhh
Q 012221 208 FMG-PNYSISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAI------------------------------IPIGLG 256 (468)
Q Consensus 208 l~G-p~~~v~~acas~l~Al~~A~~~I~~G~~d~~lvgG~e~~~------------------------------~p~~~~ 256 (468)
++| |.+.|++.|++|..||.+|.+.|++|..|+||+.|.|.+. .|+.-.
T Consensus 75 mtgipi~nvnnncatgssalflakqiiesgn~dcvlalgfekm~~gsl~~k~~dra~p~dkhi~~m~e~ygl~a~pmaaq 154 (408)
T KOG1406|consen 75 MTGIPIYNVNNNCATGSSALFLAKQIIESGNSDCVLALGFEKMERGSLSNKAADRALPVDKHISVMSETYGLEAAPMAAQ 154 (408)
T ss_pred ccCcceeeccCccccCchHHHHHHHHHhcCCcceEEeechhhhCCcccchhhhhccCcchhhHHHHHhhccCCCCcchHH
Confidence 999 9999999999999999999999999999999999999721 111111
Q ss_pred Hhhhcc--ccccC------------CCCCCCCCCCCCCCCCCee---------------------ecceeEEEEecchhH
Q 012221 257 GFVACR--ALSQR------------NDDPQTASRPWDKDRDGFV---------------------MGEGAGVLVMESLEH 301 (468)
Q Consensus 257 ~~~~~~--~l~~~------------~~~~~~~~rpfd~~~~G~v---------------------~gEGaaavvL~~~~~ 301 (468)
.|...+ .+.+. ......-..||+.-+|-|. .+||+++.||.++..
T Consensus 155 mfgnagkehmekygtk~ehfakiawknhkhsvnnpysqf~deysldqvm~s~~v~dflt~lqccptsdgaaaailaseaf 234 (408)
T KOG1406|consen 155 MFGNAGKEHMEKYGTKPEHFAKIAWKNHKHSVNNPYSQFRDEYSLDQVMKSPQVVDFLTKLQCCPTSDGAAAAILASEAF 234 (408)
T ss_pred HhhhhHHHHHHHhCCCHHHHhHhhhhccccccCChhHhhhhhccHHHHhcchHHHHHHHHhhcCCCCCchHHHHHhHHHH
Confidence 111000 00000 0001112234443333332 699999999999998
Q ss_pred HHhcCCceEE-EEEEEEEcCCCCCCCCCCC-----ChHHHHHHHHHHHHHcCCCCCCcCEEEEccCCCccCCHHHHHHHH
Q 012221 302 AMKRGAPIIA-EYLGGAVNCDAYHMTDPRA-----DGLGVSSCIESSLEDAGVSPEEVNYINAHATSTLAGDLAEINAIK 375 (468)
Q Consensus 302 A~~~g~~i~a-~i~g~~~~~d~~~~~~~~~-----~~~~~~~~i~~al~~Agl~~~dId~v~~h~~gt~~~D~~E~~al~ 375 (468)
.++.|.+-.| +|.|..+..|..+...... -..-.+.+.++.+++.|++|.||++||.|++.++ ++.+-.+||.
T Consensus 235 v~k~gl~~qaveivg~em~td~ps~faeks~ikm~gfdm~~~aa~~l~aksgltpndvqvielhdcfs~-nelityealg 313 (408)
T KOG1406|consen 235 VRKHGLEKQAVEIVGMEMATDPPSTFAEKSLIKMAGFDMTRLAAKRLFAKSGLTPNDVQVIELHDCFSA-NELITYEALG 313 (408)
T ss_pred HHhcccHHHHHHHHHHHhccCCchhhhhhhhhhhhcchHHHHHHHHHHHHcCCCcccceEEEeecccch-hhhhhHHHhc
Confidence 8888765443 5777766666432221110 1123456789999999999999999999999985 5667777776
Q ss_pred HHhcc-------------CCCceeeeccccc--CccccchhHHHHHHHHHHHhcCCcCCCCCCCCCCCCCCccccccccc
Q 012221 376 KVFKN-------------TTGIKINATKSMI--GHCLGAAGGLEAIATVKAITTGWLHPSINQFNPEPSVEFDTVANKKQ 440 (468)
Q Consensus 376 ~~f~~-------------~~~~~v~s~k~~~--Gh~~~AsG~~~l~~~~~~l~~~~~pp~~~~~~~~~~~~~~~~~~~~~ 440 (468)
..-.. ..+..|+...+.| ||++||+|+++.++..+|||.- ...++
T Consensus 314 lcpegqg~~~vdrgdntyggkwvinpsggliskghplgatglaqcaelcwqlrg~--------------------agkrq 373 (408)
T KOG1406|consen 314 LCPEGQGGEFVDRGDNTYGGKWVINPSGGLISKGHPLGATGLAQCAELCWQLRGL--------------------AGKRQ 373 (408)
T ss_pred CCCCCCCceeeecCCCccCceEEECCCCccccCCCcCccchHHHHHHHHHHHhhh--------------------hcccc
Confidence 55321 1223344444444 9999999999999999999863 22334
Q ss_pred ccCccEEEEEcccccCeeeEEE
Q 012221 441 QHEVNVAISNSFGFGGHNSVVA 462 (468)
Q Consensus 441 ~~~~~~~l~~s~g~gG~n~~~v 462 (468)
..+.+.++-++.|.||.....+
T Consensus 374 vpnakvalqhnlgiggavvv~l 395 (408)
T KOG1406|consen 374 VPNAKVALQHNLGIGGAVVVAL 395 (408)
T ss_pred CCCchhhhhhccCcCceeEEEE
Confidence 4455678888889988755444
|
|
| >KOG1390 consensus Acetyl-CoA acetyltransferase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.84 E-value=5.3e-21 Score=175.56 Aligned_cols=245 Identities=21% Similarity=0.321 Sum_probs=167.6
Q ss_pred HHHHHHHHHHHHHHHHcCCCCccccccccccceEEEeecCCCccchHHHHHHHHHhCCCCcCCcCcchhhhhhhHHHHhh
Q 012221 125 DCLRYCIVAGKKALEDADLGADISKKIDKERAGVLVGTGMGGLTVFSDGVQALIEKGHRKITPFFIPYAITNMGSALLAI 204 (468)
Q Consensus 125 ~~~~l~l~a~~~AL~dAgl~~~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~ia~ 204 (468)
+..+|+-.|++.||+++.+ ++++++ -||+|+-... .+...++.+.+.
T Consensus 29 ~A~~Lgsvaikaalera~v---~~~~v~----eVi~GnVl~A--------------------------nlGQapaRQaal 75 (396)
T KOG1390|consen 29 TATELGSVAIKAALERAVV---PPSDVA----EVIFGNVLSA--------------------------NLGQAPARQAAL 75 (396)
T ss_pred chhhHHHHHHHHHHHhcCC---CHHHhh----hhhhcccccc--------------------------ccCcchHHHHHh
Confidence 3678899999999999988 444444 2555532111 111223445554
Q ss_pred hhCC--CCcceeecccChHHHHHHHHHHHHHHhCCCCEEEEEeeccccchh-hh--------------------------
Q 012221 205 DLGF--MGPNYSISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAIIPI-GL-------------------------- 255 (468)
Q Consensus 205 ~lgl--~Gp~~~v~~acas~l~Al~~A~~~I~~G~~d~~lvgG~e~~~~p~-~~-------------------------- 255 (468)
--|| .-+++||+--|+||+.|+.+|++.|+.|..|++++||.|++..-. .+
T Consensus 76 gAGlp~sv~~tTvNkvCaSgmKAv~laaQsI~~G~~divVaGGmEsMS~vP~~~~~R~g~~~G~~~l~Dgi~~DGL~D~y 155 (396)
T KOG1390|consen 76 GAGLPYSVPATTVNKVCASGMKAVILAAQSIQTGHADIVVAGGMESMSNVPYLYVARGGVKYGGVQLVDGIVKDGLTDAY 155 (396)
T ss_pred hcCCCcceeeEeehhhhhhhHHHHHHHHHHHhcCCccEEEecccchhccCcchhhhccCcCcCCeeeeechhhcchHHHh
Confidence 4444 458999999999999999999999999999999999999843211 00
Q ss_pred ----------------------------hHhhh------cccccc-----------------CCCCCC--------CCCC
Q 012221 256 ----------------------------GGFVA------CRALSQ-----------------RNDDPQ--------TASR 276 (468)
Q Consensus 256 ----------------------------~~~~~------~~~l~~-----------------~~~~~~--------~~~r 276 (468)
..|.+ .+.+.. .++.+. ...|
T Consensus 156 ~~~~MG~~aE~~a~~~~ItRe~QD~yAI~Sy~r~~~Aq~~g~f~~EIVPV~V~~~rg~~~v~~DEe~~k~~~~~~~~~l~ 235 (396)
T KOG1390|consen 156 DKCHMGICAENTAKKYQITREEQDAYAIESYKRSENAQKAGKFDKEIVPVEVKTKRGETVVKKDEEPKKGSNIEKLSKLR 235 (396)
T ss_pred ccCCcchhHhhhHHHhCCcHhhhhhHHHHhHHHHHHHHhcCCCCCceeeEEEecCCCcEEeccchhhhcccchhhhcccc
Confidence 00000 000000 000011 1123
Q ss_pred CCCCCCCCee-------ecceeEEEEecchhHHHhcCCceEEEEEEEEEcCCCCCCCCCCCChHHHHHHHHHHHHHcCCC
Q 012221 277 PWDKDRDGFV-------MGEGAGVLVMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAGVS 349 (468)
Q Consensus 277 pfd~~~~G~v-------~gEGaaavvL~~~~~A~~~g~~i~a~i~g~~~~~d~~~~~~~~~~~~~~~~~i~~al~~Agl~ 349 (468)
|.....+|++ +.|||+++||.+.+.+.+.|.+++|+|++|+-+.. .|.....+...++.++|++||+.
T Consensus 236 ~vF~~~ggTVTaaNAS~lnDGAAAvvL~s~e~~~~~glkPLArIv~~~dAa~-----~P~df~iaP~laipk~lk~aG~~ 310 (396)
T KOG1390|consen 236 PVFKEDGGTVTAANASTLNDGAAAVVLMSGEAAKELGLKPLARIVAWGDAAT-----EPIDFTIAPALAIPKALKKAGLE 310 (396)
T ss_pred ceeecCCCeeccccccccCccceeeEEechhhHhHcCCchHHHHhhhhhhcc-----ChhhcccchHHHHHHHHHHcCcc
Confidence 3333334444 79999999999999999999999999999987652 22222234467899999999999
Q ss_pred CCCcCEEEEccCCCccCCHHHHHH--HHHHhc-cCCCceeeecccccCccccchhHHHHHHHHHHHhc
Q 012221 350 PEEVNYINAHATSTLAGDLAEINA--IKKVFK-NTTGIKINATKSMIGHCLGAAGGLEAIATVKAITT 414 (468)
Q Consensus 350 ~~dId~v~~h~~gt~~~D~~E~~a--l~~~f~-~~~~~~v~s~k~~~Gh~~~AsG~~~l~~~~~~l~~ 414 (468)
.+||||+|.+ +.+-... ..+.++ +.+.+++.+..-.+|||+|+||+.-++..++.|++
T Consensus 311 ~sdVd~~EiN-------EAFs~v~lA~iK~LgldP~kVNv~GGAValGHPlG~SGaRi~~tL~~~L~~ 371 (396)
T KOG1390|consen 311 QSDVDYWEIN-------EAFSVVVLANIKKLGLDPSKVNVHGGAVALGHPLGMSGARILVTLLHTLEQ 371 (396)
T ss_pred hhhhhHHhhh-------hhhhHHHHHHHHHhCCCHhhccCCCceeecCCCcCCcchhHHHHHHHHHHh
Confidence 9999999975 3332222 222233 24568999999999999999999999999999987
|
|
| >PRK07204 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed | Back alignment and domain information |
|---|
Probab=99.83 E-value=1e-18 Score=172.58 Aligned_cols=296 Identities=20% Similarity=0.246 Sum_probs=187.4
Q ss_pred CCCcEEEEeeceeccCC-CCHHHHHHHHHcCCCCccccCCCCCCCCCCccccccCCCCCCCCCCccccccCCHHHHHHHH
Q 012221 54 PKKRVVITGMGLVSVFG-NDVDAYYNKLLDGESGITMIDRFDASKFPTRFGGQIRGFSAEGYIDGKNDRRLDDCLRYCIV 132 (468)
Q Consensus 54 ~~~~V~ItG~g~~~p~g-~~~~~~~~~L~~G~~~i~~~~~~~~~~~~~~~~g~v~~~d~~~~i~~~~~~~~d~~~~l~l~ 132 (468)
|++++.|+|+|...|.- .+.+++-+.+ |... ..+. ...+...+ .+.. -.....|+.+
T Consensus 1 ~~~~~~I~~~g~~lP~~~v~~~~~~~~~--~~~~-~~i~--~~~Gi~~R-----------~~~~------~~~~~~la~~ 58 (329)
T PRK07204 1 MKRYISIKGIGTYLPKRKVDSLELDKKL--DLPE-GWVL--KKSGVKTR-----------HFVD------GETSSYMGAE 58 (329)
T ss_pred CCCCcEEEEEEEeCCCceecHHHHHHhh--CCCH-hHhh--hccCceEE-----------eecC------CCCHHHHHHH
Confidence 35678999999999998 4566654432 1100 0000 00111100 0111 1235789999
Q ss_pred HHHHHHHHcCCCCccccccccccceEEEeecCCCccchHHHHHHHHHhCCCCcCCcCcchhhhhhhHHHHhhhhCCCC--
Q 012221 133 AGKKALEDADLGADISKKIDKERAGVLVGTGMGGLTVFSDGVQALIEKGHRKITPFFIPYAITNMGSALLAIDLGFMG-- 210 (468)
Q Consensus 133 a~~~AL~dAgl~~~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~ia~~lgl~G-- 210 (468)
|+++||+++|+ ++++++ .+++++..+.. .....+.++...+|+++
T Consensus 59 Aa~~aL~~ag~---~~~dId----~li~~~~~~~~--------------------------~~p~~a~~v~~~lgl~~~~ 105 (329)
T PRK07204 59 AAKKAVEDAKL---TLDDID----CIICASGTIQQ--------------------------AIPCTASLIQEQLGLQHSG 105 (329)
T ss_pred HHHHHHHHcCC---CHHHCC----EEEEECCCCCC--------------------------CCccHHHHHHHHhCCCCCC
Confidence 99999999999 566666 46666542211 01133677888999975
Q ss_pred -cceeecccChHHHHHHHHHHHHHHhCCCCEEEEEeeccccchhhhhHhhhccccccCCCCCCCCCCCCCCCCCCeeecc
Q 012221 211 -PNYSISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWDKDRDGFVMGE 289 (468)
Q Consensus 211 -p~~~v~~acas~l~Al~~A~~~I~~G~~d~~lvgG~e~~~~p~~~~~~~~~~~l~~~~~~~~~~~rpfd~~~~G~v~gE 289 (468)
+++.|+.+|++++.||..|.++|++|.++.+||+++|..... ..|+....++++||
T Consensus 106 ~~~~~v~~~C~~~~~al~~a~~~l~~g~~~~~Lvv~~e~~s~~-----------------------~~~~~~~~~~lfGD 162 (329)
T PRK07204 106 IPCFDINSTCLSFITALDTISYAIECGRYKRVLIISSEISSVG-----------------------LNWGQNESCILFGD 162 (329)
T ss_pred ceEEEccchhHHHHHHHHHHHHHHHCCCCCEEEEEEeccccCC-----------------------CCcccCcceEEEec
Confidence 889999999999999999999999999999999999962110 01222345789999
Q ss_pred eeEEEEecchhHHHhcCCceE-------------EEEEEEEEcCCCCCCCCC-------CCChH--------HHHHHHHH
Q 012221 290 GAGVLVMESLEHAMKRGAPII-------------AEYLGGAVNCDAYHMTDP-------RADGL--------GVSSCIES 341 (468)
Q Consensus 290 GaaavvL~~~~~A~~~g~~i~-------------a~i~g~~~~~d~~~~~~~-------~~~~~--------~~~~~i~~ 341 (468)
||+|+||++.+.. .+++ .++.+.+...+......+ ..++. ...+++++
T Consensus 163 GAaA~ll~~~~~~----~~il~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 238 (329)
T PRK07204 163 GAAAVVITKGDHS----SRILASHMETYSSGAHLSEIRGGGTMIHPREYSEERKEDFLFDMNGRAIFKLSSKYLMKFIDK 238 (329)
T ss_pred ccEEEEEEEcCCC----CcEEEEEEEEecCCCCceEEecCCcCCCCcccccccccCceEEECCHHHHHHHHHHHHHHHHH
Confidence 9999999975421 2222 222222211111110000 01122 24578999
Q ss_pred HHHHcCCCCCCcCEEEEccCCCccCCHHHHHHHHHHhccCCCceeeecccccCccccchhHHHHHHHHHHHhcCCcCCCC
Q 012221 342 SLEDAGVSPEEVNYINAHATSTLAGDLAEINAIKKVFKNTTGIKINATKSMIGHCLGAAGGLEAIATVKAITTGWLHPSI 421 (468)
Q Consensus 342 al~~Agl~~~dId~v~~h~~gt~~~D~~E~~al~~~f~~~~~~~v~s~k~~~Gh~~~AsG~~~l~~~~~~l~~~~~pp~~ 421 (468)
+|+++|++++|||++..|..+.+. .+++.+.++-. .-.+......+||+.+|+=.+.+..+ ++.+.+
T Consensus 239 ~L~~~gl~~~did~~~~H~~~~~~-----~~~i~~~l~l~-~e~~~~~~~~~Gn~~sas~~~~L~~~---~~~g~~---- 305 (329)
T PRK07204 239 LLMDAGYTLADIDLIVPHQASGPA-----MRLIRKKLGVD-EERFVTIFEDHGNMIAASIPVALFEA---IKQKKV---- 305 (329)
T ss_pred HHHHcCCCHHHCCEEEeCCCCHHH-----HHHHHHHcCCC-HHHhhhhHhhhCcHHHHHHHHHHHHH---HHcCCC----
Confidence 999999999999999999988765 34566666542 11244667788998877655444433 444432
Q ss_pred CCCCCCCCCCcccccccccccCccEEEEEcccccCeeeEEEEe
Q 012221 422 NQFNPEPSVEFDTVANKKQQHEVNVAISNSFGFGGHNSVVAFS 464 (468)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~g~gG~n~~~vl~ 464 (468)
.+-+.++..+||.|-+-.+++|+
T Consensus 306 --------------------~~Gd~vll~~~G~G~s~~~~ll~ 328 (329)
T PRK07204 306 --------------------QRGNKILLLGTSAGLSIGGILLE 328 (329)
T ss_pred --------------------CCCCEEEEEEEchhhhheeeEEe
Confidence 11245666799999888888876
|
|
| >PRK07937 lipid-transfer protein; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.6e-18 Score=170.81 Aligned_cols=267 Identities=15% Similarity=0.123 Sum_probs=169.1
Q ss_pred HHHHHHHHHHHHHHHcCCCCccccccccccceEEEeecCCCccchHHHHHHHHHhCCCCcCCcCcchhhhhhhHHHHhhh
Q 012221 126 CLRYCIVAGKKALEDADLGADISKKIDKERAGVLVGTGMGGLTVFSDGVQALIEKGHRKITPFFIPYAITNMGSALLAID 205 (468)
Q Consensus 126 ~~~l~l~a~~~AL~dAgl~~~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~ia~~ 205 (468)
...|+.+|+++||+|||+ +++++| +++.+.. +... ... +. ...+...
T Consensus 24 ~~el~~eA~~~Al~DAgl---~~~dID----~~~~~~~--~~~~---------------~~~------~~---~~~~~~~ 70 (352)
T PRK07937 24 GVEMLMPCFAELYAELGI---TKSDIG----FWCSGSS--DYLA---------------GRA------FS---FISAIDS 70 (352)
T ss_pred HHHHHHHHHHHHHHHcCC---CHHHCC----EEEEEcc--cccc---------------ccc------cc---hhhHHhh
Confidence 357899999999999999 677787 4543321 0000 000 00 0112333
Q ss_pred hCCC-C-cceeecccChHHHHHHHHHHHHHHhCCCCEEEEEeeccccc-----------------hhh-----hhHhhhc
Q 012221 206 LGFM-G-PNYSISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAII-----------------PIG-----LGGFVAC 261 (468)
Q Consensus 206 lgl~-G-p~~~v~~acas~l~Al~~A~~~I~~G~~d~~lvgG~e~~~~-----------------p~~-----~~~~~~~ 261 (468)
+|+. + |...++ ++|..||..|+.+|++|.+|+|||.|.|.... |.. +..+...
T Consensus 71 ~G~~~~~~~~~v~---~~g~~a~~~A~~aI~sG~~d~VLv~g~~k~~~~~~~~~~~~~~~~~~~~p~G~~~~~~~Al~a~ 147 (352)
T PRK07937 71 IGAVPPINESHVE---MDAAWALYEAWVKLLTGEVDTALVYGFGKSSAGTLRRVLALQLDPYTVAPLWPDSVSMAGLQAR 147 (352)
T ss_pred ccCCCCCceEEec---CcHHHHHHHHHHHHhcCCCCEEEEEEecccCccchhhhhhccCCcceeccCCCchHHHHHHHHH
Confidence 5662 3 445555 46888999999999999999999999985321 110 0111111
Q ss_pred cccccC------------------CCCCCCCCC--------------CCCCCCCCeeecceeEEEEecchhHHHhcCCce
Q 012221 262 RALSQR------------------NDDPQTASR--------------PWDKDRDGFVMGEGAGVLVMESLEHAMKRGAPI 309 (468)
Q Consensus 262 ~~l~~~------------------~~~~~~~~r--------------pfd~~~~G~v~gEGaaavvL~~~~~A~~~g~~i 309 (468)
+.+.+. ..+|....| |+. .-|...++|||+++||.+++.|++.+.++
T Consensus 148 ~ym~~yG~t~e~lA~vavk~r~nA~~NP~A~~rit~edvl~s~~ia~PL~-l~d~~~~~DGAaA~vl~s~~~A~~l~~~p 226 (352)
T PRK07937 148 AGLDAGKWTEEQMAEVAARSRADARRNPSAEPSISVDELLARPYFADPLR-RHDIAPITDGAAAVVLAAGDRARELRERP 226 (352)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHhhCchhhccCCHHHHhcCCcccCCch-hhcCCCCCCcceEEEEecHHHHHHcCCCc
Confidence 111111 012322222 111 12444589999999999999999988777
Q ss_pred EEEEEEEEEcCCCCCCCCCCCChHHHHHHHHHHHHH-cCCCCCCcCEEEEccCCCccCCHHHHHHHHHH-hccCCCceee
Q 012221 310 IAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLED-AGVSPEEVNYINAHATSTLAGDLAEINAIKKV-FKNTTGIKIN 387 (468)
Q Consensus 310 ~a~i~g~~~~~d~~~~~~~~~~~~~~~~~i~~al~~-Agl~~~dId~v~~h~~gt~~~D~~E~~al~~~-f~~~~~~~v~ 387 (468)
++|+|++...+.......+.. ...++++++++ ||++|+|||++|.|++++. .|+..++.+ |.+..+++.+
T Consensus 227 -v~I~g~~~~~~~~~~~~~d~~---~~~~~~~a~~~aAgi~~~diD~~Ei~D~F~~----~~l~~~e~lGl~g~~pvN~~ 298 (352)
T PRK07937 227 -AWITGIEHRIESPSLGARDLT---RSPSTALAAEAATGGDAGGVDVAELHAPFTH----QELILREALGLGDKTKVNPS 298 (352)
T ss_pred -EEEEEEEEeeCCccccccccc---cHHHHHHHHHHhcCCCHHHCCEEEEeCCChH----HHHHHHHHcCCCCCCCcCCC
Confidence 999999987765443222111 12345566666 4999999999999999986 444444443 2233456655
Q ss_pred ecccccCccccchhHHHHHHHHHHHhcCCcCCCCCCCCCCCCCCcccccccccccCccEEEEEcccc--cCeeeEEEEee
Q 012221 388 ATKSMIGHCLGAAGGLEAIATVKAITTGWLHPSINQFNPEPSVEFDTVANKKQQHEVNVAISNSFGF--GGHNSVVAFSA 465 (468)
Q Consensus 388 s~k~~~Gh~~~AsG~~~l~~~~~~l~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~g~--gG~n~~~vl~~ 465 (468)
++-.. ||+.||+|+.+++++++||+.+ ..+++++++.|- +.+++.+|+++
T Consensus 299 GG~l~-ghp~gatG~~~~~e~~~QL~g~---------------------------~a~~~l~~~~Gg~~~~~~~v~v~~~ 350 (352)
T PRK07937 299 GGALA-ANPMFAAGLERIGEAARHIWDG---------------------------SARRALAHATSGPALQQNLVAVLEG 350 (352)
T ss_pred ccchh-cCchhHHHHHHHHHHHHHHhcc---------------------------CCCEEEEecccccccceEEEEEEec
Confidence 55445 9999999999999999999875 246788887763 35556666654
|
|
| >PRK08257 acetyl-CoA acetyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.6e-18 Score=178.21 Aligned_cols=275 Identities=18% Similarity=0.158 Sum_probs=184.3
Q ss_pred HHHHHHHHHHHHHHcCCCCcc--ccccccccceEEEeecCCCccchHHHHHHHHHhCCCCcCCcCcchhhhhhhHHHHhh
Q 012221 127 LRYCIVAGKKALEDADLGADI--SKKIDKERAGVLVGTGMGGLTVFSDGVQALIEKGHRKITPFFIPYAITNMGSALLAI 204 (468)
Q Consensus 127 ~~l~l~a~~~AL~dAgl~~~~--~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~ia~ 204 (468)
..|+.+|+++||+|||+ . ++++| +++++..... . .+.....++.
T Consensus 28 ~~L~~eA~~~Al~DAGl---~~~~~dID----~v~v~~~~~~------------------------~---~~~~~~~la~ 73 (498)
T PRK08257 28 VDLMAAAARAAAADAGA---DAVLEAID----SVAVVNQLSW------------------------R---YRDPPGLLAE 73 (498)
T ss_pred HHHHHHHHHHHHHhcCC---CcCHHHCC----EEEEeccccc------------------------c---ccCHHHHHHH
Confidence 56899999999999999 5 67777 6666643210 0 0112356778
Q ss_pred hhCCCC-cceeecccChHHHHHHHHHHHHHHhCCCCEEEEEeeccccchhh-----------------------------
Q 012221 205 DLGFMG-PNYSISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAIIPIG----------------------------- 254 (468)
Q Consensus 205 ~lgl~G-p~~~v~~acas~l~Al~~A~~~I~~G~~d~~lvgG~e~~~~p~~----------------------------- 254 (468)
.+|++. +.....++++++..+|..|+++|++|++|+|||+|+|...+...
T Consensus 74 ~lGl~p~~~~~~~~GG~s~~~~v~~Aa~~IasG~advVLv~G~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (498)
T PRK08257 74 RLGADPARTVYSPVGGNSPQRLVNEAALRIAAGEADVALVAGAEAQSTATKLRKAGEKLDWTPQDEGPLADRGGDPRPMA 153 (498)
T ss_pred HcCCCCcceeEecCCCHHHHHHHHHHHHHHHCCCCCEEEEeeeeeccccchhcccccccccccccccccccccccccccc
Confidence 889864 44456678889999999999999999999999999997321100
Q ss_pred --h------------hHh-------------h----hccccc---cC--CCCCCC--------------------CCCCC
Q 012221 255 --L------------GGF-------------V----ACRALS---QR--NDDPQT--------------------ASRPW 278 (468)
Q Consensus 255 --~------------~~~-------------~----~~~~l~---~~--~~~~~~--------------------~~rpf 278 (468)
+ ..+ + ....+. +. ..+|.. -+-||
T Consensus 154 ~~~e~~~G~~~p~~~yal~a~ay~~~~G~t~e~~~a~~a~l~~~~~~~Aa~NP~A~~r~~~t~eevl~~~~~~rmIa~Pl 233 (498)
T PRK08257 154 SPAELRHGLDRPVYVYPLFENALRAALGRSPEEHRAEMGELWAPFSAVAAKNPHAWIPRERSAEEIVTPTPDNRMIAWPY 233 (498)
T ss_pred chhhhhcCCCCcchHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHhhCHHHhhCCCCCHHHHhcccCCCCeeeCCc
Confidence 0 000 0 000000 00 001110 11222
Q ss_pred CCCCCCeeecceeEEEEecchhHHHhcCC--ceEEEEEEEEEcCCCCCCC-CCCC-ChHHHHHHHHHHHHHcCCCCCCcC
Q 012221 279 DKDRDGFVMGEGAGVLVMESLEHAMKRGA--PIIAEYLGGAVNCDAYHMT-DPRA-DGLGVSSCIESSLEDAGVSPEEVN 354 (468)
Q Consensus 279 d~~~~G~v~gEGaaavvL~~~~~A~~~g~--~i~a~i~g~~~~~d~~~~~-~~~~-~~~~~~~~i~~al~~Agl~~~dId 354 (468)
..-.......||++++||.+++.|++.+. ....+|.|++..++..... .++. .......+.+++|++||++++|||
T Consensus 234 ~~ldca~~~~DGaaAvil~S~e~A~~l~~~~~~~V~i~g~a~~~~~~~~~~r~~~~~~~~~~~aa~~a~~~AGi~~~Did 313 (498)
T PRK08257 234 TKLMNANDMVDQGAAVLLTSVAKARRLGVPEDRWVYLHGGADAHDPYDILERPDLHRSPAIRAAGRRALALAGLGIDDID 313 (498)
T ss_pred cHhhcCCCCcccceEEEEeeHHHHHhcCCCCCceEEEEEEEEeeCccccccccccccChHHHHHHHHHHHHhCCCHHHCC
Confidence 22112223689999999999999998873 2247799999887754332 2221 233445799999999999999999
Q ss_pred EEEEccCCCccCCHHHHHHHHHH-hccC--CCceeeecccccCccccchhHHHHHHHHHHHhcCCcCCCCCCCCCCCCCC
Q 012221 355 YINAHATSTLAGDLAEINAIKKV-FKNT--TGIKINATKSMIGHCLGAAGGLEAIATVKAITTGWLHPSINQFNPEPSVE 431 (468)
Q Consensus 355 ~v~~h~~gt~~~D~~E~~al~~~-f~~~--~~~~v~s~k~~~Gh~~~AsG~~~l~~~~~~l~~~~~pp~~~~~~~~~~~~ 431 (468)
++|.|.+++. .|..++..+ |... .+++++++....||+.+++|+.+++++++||+.+
T Consensus 314 ~~elydcF~~----~~~~~~E~LGl~~~g~~pvN~sGGl~s~G~P~~a~g~~~i~E~v~QLRg~---------------- 373 (498)
T PRK08257 314 AFDLYSCFPS----AVQVAARELGLDLDDPRPLTVTGGLPFFGGPGNNYVTHAIAEMVERLRAN---------------- 373 (498)
T ss_pred EEEeccCCHH----HHHHHHHHcCcCCCCCCCcCCCcChhhcCCchhhHHHHHHHHHHHHHhhc----------------
Confidence 9999999986 555555554 3332 3677777777789999999999999999999863
Q ss_pred cccccccccccCccEEEEEccc-ccCeeeEEEEeec
Q 012221 432 FDTVANKKQQHEVNVAISNSFG-FGGHNSVVAFSAF 466 (468)
Q Consensus 432 ~~~~~~~~~~~~~~~~l~~s~g-~gG~n~~~vl~~~ 466 (468)
..+++|+.+.| ++..++..|+++-
T Consensus 374 -----------~~~~gLv~~~GG~~~~~~~~vl~~~ 398 (498)
T PRK08257 374 -----------PGRRGLVTANGGYLTKHSVGVYSTE 398 (498)
T ss_pred -----------CCCEEEEECCCChhhceEEEEEeCC
Confidence 13578887765 4444556666653
|
|
| >PRK09352 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.5e-17 Score=163.68 Aligned_cols=291 Identities=22% Similarity=0.267 Sum_probs=183.2
Q ss_pred CCcEEEEeeceeccCC-CCHHHHHHHHHcCCCCccccCCCCCCCCCCccccccCCCCCCCCCCccccccCCHHHHHHHHH
Q 012221 55 KKRVVITGMGLVSVFG-NDVDAYYNKLLDGESGITMIDRFDASKFPTRFGGQIRGFSAEGYIDGKNDRRLDDCLRYCIVA 133 (468)
Q Consensus 55 ~~~V~ItG~g~~~p~g-~~~~~~~~~L~~G~~~i~~~~~~~~~~~~~~~~g~v~~~d~~~~i~~~~~~~~d~~~~l~l~a 133 (468)
|.+|.|+++|...|.- ...+++++.+......+. .+ .+ +..+....+ -.....|+.+|
T Consensus 1 ~~~v~I~ai~~~lP~~~~~~~~~~~~~~~~~~~i~--~~---~g-----------i~~r~~~~~-----~~~~~~la~~A 59 (319)
T PRK09352 1 MMYAKILGTGSYLPERVVTNDDLEKMVDTSDEWIV--TR---TG-----------IKERRIAAP-----DETTSDLATEA 59 (319)
T ss_pred CCceEEEEEEEECCCeEEcHHHHHHHcCCCHHHhh--hh---cC-----------eEEEEeCCC-----CCCHHHHHHHH
Confidence 3579999999999998 577887776421110000 00 01 100000001 12357899999
Q ss_pred HHHHHHHcCCCCccccccccccceEEEeecCCCccchHHHHHHHHHhCCCCcCCcCcchhhhhhhHHHHhhhhCCCC-cc
Q 012221 134 GKKALEDADLGADISKKIDKERAGVLVGTGMGGLTVFSDGVQALIEKGHRKITPFFIPYAITNMGSALLAIDLGFMG-PN 212 (468)
Q Consensus 134 ~~~AL~dAgl~~~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~ia~~lgl~G-p~ 212 (468)
++++|+++|+ ++++++ .+++++..... . .. ..+..++..+|+++ +.
T Consensus 60 ~~~al~~agl---~~~~id----~vi~~~~~~~~---------------------~----~~-~~~~~i~~~lG~~~~~~ 106 (319)
T PRK09352 60 AKKALEAAGI---DPEDID----LIIVATTTPDY---------------------A----FP-STACLVQARLGAKNAAA 106 (319)
T ss_pred HHHHHHHcCC---CHHHCC----EEEEEcCCCCC---------------------C----Cc-hHHHHHHHHhCCCCCcE
Confidence 9999999999 556666 57777642110 0 11 13577888999988 88
Q ss_pred eeecccChHHHHHHHHHHHHHHhCCCCEEEEEeeccccchhhhhHhhhccccccCCCCCCCCCCCCCCCCCCeeecceeE
Q 012221 213 YSISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWDKDRDGFVMGEGAG 292 (468)
Q Consensus 213 ~~v~~acas~l~Al~~A~~~I~~G~~d~~lvgG~e~~~~p~~~~~~~~~~~l~~~~~~~~~~~rpfd~~~~G~v~gEGaa 292 (468)
++|..+|+|++.||..|+++|++|++|.+||+|+|.+ +.. + . ++....++++||||+
T Consensus 107 ~~v~~~Casg~~al~~A~~~i~~g~~~~vLvv~~e~~-s~~----------~-----------~-~~~~~~~~~~gDGaa 163 (319)
T PRK09352 107 FDLSAACSGFVYALSTADQFIRSGAYKNVLVIGAEKL-SRI----------V-----------D-WTDRSTCVLFGDGAG 163 (319)
T ss_pred eeccccchhHHHHHHHHHHHHHcCCCCEEEEEEehhh-ccc----------c-----------C-cccCCceEEEeccce
Confidence 9999999999999999999999999999999999972 111 0 0 111234679999999
Q ss_pred EEEecchhHHHhcCCceEEEEEEEEEcCCCCC---CCCCC-------------CCh--------HHHHHHHHHHHHHcCC
Q 012221 293 VLVMESLEHAMKRGAPIIAEYLGGAVNCDAYH---MTDPR-------------ADG--------LGVSSCIESSLEDAGV 348 (468)
Q Consensus 293 avvL~~~~~A~~~g~~i~a~i~g~~~~~d~~~---~~~~~-------------~~~--------~~~~~~i~~al~~Agl 348 (468)
++||++.+.. . +.++...+++.+ +..|. ..+ ..+.++++++|+++|+
T Consensus 164 A~ll~~~~~~-----~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~g~ 234 (319)
T PRK09352 164 AVVLGASEEP-----G----ILSTHLGSDGSYGDLLYLPGGGSRGPASPGYLRMEGREVFKFAVRELAKVAREALEAAGL 234 (319)
T ss_pred EEEEEEcCCC-----C----eEEEEEEEcCCCCCeEEeCCCCCCCCCCCCceEECCHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 9999985431 1 122222222211 00000 011 2345689999999999
Q ss_pred CCCCcCEEEEccCCCccCCHHHHHHHHHHhccCCCceeeecccccCccccchhHHHHHHHHHHHhcCCcCCCCCCCCCCC
Q 012221 349 SPEEVNYINAHATSTLAGDLAEINAIKKVFKNTTGIKINATKSMIGHCLGAAGGLEAIATVKAITTGWLHPSINQFNPEP 428 (468)
Q Consensus 349 ~~~dId~v~~h~~gt~~~D~~E~~al~~~f~~~~~~~v~s~k~~~Gh~~~AsG~~~l~~~~~~l~~~~~pp~~~~~~~~~ 428 (468)
+++||+|+..|..+....+ .+.+.++-.. -.+......+||+.+|+=++.+..++ +.+.+
T Consensus 235 ~~~di~~~~~h~~~~~~~~-----~~~~~lg~~~-~~~~~~~~~~Gn~~~a~~~~~L~~~~---~~g~~----------- 294 (319)
T PRK09352 235 TPEDIDWLVPHQANLRIID-----ATAKKLGLPM-EKVVVTVDKYGNTSAASIPLALDEAV---RDGRI----------- 294 (319)
T ss_pred CHHHCCEEEECCCCHHHHH-----HHHHHhCCCH-HHhhhhHHhhCCHHHHHHHHHHHHHH---HcCCC-----------
Confidence 9999999999976554322 3333333211 11223345789998887666665443 34322
Q ss_pred CCCcccccccccccCccEEEEEcccccCeeeEEEEe
Q 012221 429 SVEFDTVANKKQQHEVNVAISNSFGFGGHNSVVAFS 464 (468)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~l~~s~g~gG~n~~~vl~ 464 (468)
.+-+..+.-+||.|-+-.+++|+
T Consensus 295 -------------~~Gd~vll~s~G~G~~~~~~ll~ 317 (319)
T PRK09352 295 -------------KRGDLVLLEGFGGGLTWGAALVR 317 (319)
T ss_pred -------------CCCCEEEEEEEchhheeEEEEEE
Confidence 11245666789998887777776
|
|
| >PRK06816 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.7e-17 Score=163.24 Aligned_cols=305 Identities=18% Similarity=0.141 Sum_probs=177.6
Q ss_pred cEEEEeeceeccCC-CCHHHHHHHHHcCCCCccccCCC--CCCCCCCccccccCCCCCCCCCCccccccCCHHHHHHHHH
Q 012221 57 RVVITGMGLVSVFG-NDVDAYYNKLLDGESGITMIDRF--DASKFPTRFGGQIRGFSAEGYIDGKNDRRLDDCLRYCIVA 133 (468)
Q Consensus 57 ~V~ItG~g~~~p~g-~~~~~~~~~L~~G~~~i~~~~~~--~~~~~~~~~~g~v~~~d~~~~i~~~~~~~~d~~~~l~l~a 133 (468)
+|.|+|+|...|.- .+.+++.+.+..-.........| ...+...|+... +. +-........|+.+|
T Consensus 2 ~v~I~gig~~lP~~~v~n~~~~~~~~~~~~~~~~~~~~i~~~~Gi~~R~~~~----------~~-~~~~~~~~~~La~~A 70 (378)
T PRK06816 2 NVYITSTGAFLPGEPVSNDEMEAYLGLINGKPSRARRIILRNNGIKTRHYAL----------DP-EGRPTHSNAQMAAEA 70 (378)
T ss_pred CeEEEeeeecCCCCccCHHHHHHHHhhccCCcHHHHHHHHHhCCCceEEEEE----------CC-CCCCCCCHHHHHHHH
Confidence 48999999999998 56666654332110000000000 111222222110 00 000012357899999
Q ss_pred HHHHHHHcCCCCccccccccccceEEEeecCCCccchHHHHHHHHHhCCCCcCCcCcchhhhhhhHHHHhhhhCCCC-cc
Q 012221 134 GKKALEDADLGADISKKIDKERAGVLVGTGMGGLTVFSDGVQALIEKGHRKITPFFIPYAITNMGSALLAIDLGFMG-PN 212 (468)
Q Consensus 134 ~~~AL~dAgl~~~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~ia~~lgl~G-p~ 212 (468)
+++||+++|+ ++++++ .+++++..+.+ .+ + ..+..+...+|++. +.
T Consensus 71 ~~~aL~~agi---~~~dId----~li~~s~~~~~---------------------~~----p-~~a~~v~~~Lgl~~~~~ 117 (378)
T PRK06816 71 IRDLLDDAGF---SLGDIE----LLACGTSQPDQ---------------------LM----P-GHASMVHGELGAPPIEV 117 (378)
T ss_pred HHHHHHHcCC---CHHHCC----EEEEEECCCCc---------------------CC----h-HHHHHHHhhCCCCCCce
Confidence 9999999999 666666 47777643211 11 1 12456777789876 88
Q ss_pred eeecccChHHHHHHHHHHHHHHhCCCCEEEEEeeccccchhhhhHhhh-ccccccCCCCCCCCCCCCCCCCCCeeeccee
Q 012221 213 YSISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAIIPIGLGGFVA-CRALSQRNDDPQTASRPWDKDRDGFVMGEGA 291 (468)
Q Consensus 213 ~~v~~acas~l~Al~~A~~~I~~G~~d~~lvgG~e~~~~p~~~~~~~~-~~~l~~~~~~~~~~~rpfd~~~~G~v~gEGa 291 (468)
+.|+.+|+|++.||..|.++|++|.++.+||+|+|.+........|.. .+.+... +...+++|+.+..|+++||||
T Consensus 118 ~~v~~~Cas~~~al~~A~~~i~sg~~~~vLvv~~E~~s~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~fGDGA 194 (378)
T PRK06816 118 VSSAGVCAAGMMALKYAYLSVKAGESRNAVATASELASRWFRASRFEAEEEKLAEL---EENPEIAFEKDFLRWMLSDGA 194 (378)
T ss_pred eeecCcCHHHHHHHHHHHHHHHCCCCCEEEEEeEccchhhhhhhhhhhHHHHhhcC---cccCCCCCCCCCCCEeeeccc
Confidence 899999999999999999999999999999999998543333222221 2223221 234578999999999999999
Q ss_pred EEEEecchhHHHhcCCc--eEEEEEE-EEEcC------------CCCCCC----CCC-----------CChHH-------
Q 012221 292 GVLVMESLEHAMKRGAP--IIAEYLG-GAVNC------------DAYHMT----DPR-----------ADGLG------- 334 (468)
Q Consensus 292 aavvL~~~~~A~~~g~~--i~a~i~g-~~~~~------------d~~~~~----~~~-----------~~~~~------- 334 (468)
+|+||++.+.. .|.. +.....+ ..... ++.... .+. .++..
T Consensus 195 ~A~vl~~~~~~--~g~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (378)
T PRK06816 195 GAVLLENKPRP--DGLSLRIDWIDLRSYAGELPVCMYAGAEKNEDGSLKGWSDYPPEEAEAASALSLKQDVRLLNENIVV 272 (378)
T ss_pred EEEEEEecCCC--CCceEEEEEEeeecccccCccceecCCccCCCCCccCcccCCHHHHHhccCchHHhHHHHHHHHhHH
Confidence 99999875431 2221 1100000 00000 000000 000 01112
Q ss_pred -HHHHHHHHHHHcCCCCCCcCEEEEccCCCccCCHHHHHHHHHH-hcc-CCCceeeecccccCccccchhHHHHHHHHHH
Q 012221 335 -VSSCIESSLEDAGVSPEEVNYINAHATSTLAGDLAEINAIKKV-FKN-TTGIKINATKSMIGHCLGAAGGLEAIATVKA 411 (468)
Q Consensus 335 -~~~~i~~al~~Agl~~~dId~v~~h~~gt~~~D~~E~~al~~~-f~~-~~~~~v~s~k~~~Gh~~~AsG~~~l~~~~~~ 411 (468)
....++++|+++|++++|||++..|.......+.+ .+.|++. ++- .+++ -..-..+||+.+|+-.+.+..+
T Consensus 273 ~~~~~i~~~L~~~gl~~~DId~~v~Hq~n~~~~~~v-~~~l~~~~~gl~~~k~--~~~~~~~GNt~sAsipi~L~~a--- 346 (378)
T PRK06816 273 YTIKPLLELVDKRNLDPDDIDYFLPHYSSEYFREKI-VELLAKAGFMIPEEKW--FTNLATVGNTGSASIYIMLDEL--- 346 (378)
T ss_pred HHHHHHHHHHHHcCCChhhCCEEeeCcccHHHHHHH-HHHHHhccCCCChhhe--EEeccccccccchHHHHHHHHH---
Confidence 25678899999999999999999998876553322 1111111 121 1122 2344578999988876666544
Q ss_pred HhcCC
Q 012221 412 ITTGW 416 (468)
Q Consensus 412 l~~~~ 416 (468)
++.+.
T Consensus 347 ~~~g~ 351 (378)
T PRK06816 347 LNSGR 351 (378)
T ss_pred HHcCC
Confidence 44543
|
|
| >COG0332 FabH 3-oxoacyl-[acyl-carrier-protein] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.6e-16 Score=152.38 Aligned_cols=290 Identities=23% Similarity=0.321 Sum_probs=181.3
Q ss_pred CcEEEEeeceeccCC-CCHHHHHHHHHcCCCCccccCCCCCCCCCCccccccCCCCCCCCCCccc-cccCCHHHHHHHHH
Q 012221 56 KRVVITGMGLVSVFG-NDVDAYYNKLLDGESGITMIDRFDASKFPTRFGGQIRGFSAEGYIDGKN-DRRLDDCLRYCIVA 133 (468)
Q Consensus 56 ~~V~ItG~g~~~p~g-~~~~~~~~~L~~G~~~i~~~~~~~~~~~~~~~~g~v~~~d~~~~i~~~~-~~~~d~~~~l~l~a 133 (468)
..+.|+|+|...|.- .+.+++-+. +...+.|-..... |..+. +..-.....|+.+|
T Consensus 2 ~~a~i~g~G~~lP~~~vtn~d~e~~-------~~tsdewI~~rtG---------------ir~R~~a~~~e~~s~la~~A 59 (323)
T COG0332 2 MNAKILGIGSYLPERVVTNADLEKR-------VDTSDEWIETRTG---------------IRERRIAADDETTSDLAVEA 59 (323)
T ss_pred CcceEEEEEeecCCcccChHHHHhc-------cCCCcceeeeecC---------------CceeeecCCCccHHHHHHHH
Confidence 457899999999998 455555421 2222333221110 11111 11123467899999
Q ss_pred HHHHHHHcCCCCccccccccccceEEEeecCCCccchHHHHHHHHHhCCCCcCCcCcchhhhhhhHHHHhhhhCCCC-cc
Q 012221 134 GKKALEDADLGADISKKIDKERAGVLVGTGMGGLTVFSDGVQALIEKGHRKITPFFIPYAITNMGSALLAIDLGFMG-PN 212 (468)
Q Consensus 134 ~~~AL~dAgl~~~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~ia~~lgl~G-p~ 212 (468)
+++||++||+ .++++| -+++.+.... .+....+..+...||+++ +.
T Consensus 60 a~~AL~~Agi---~~~dID----lII~aT~tpd--------------------------~~~Ps~A~~vq~~LG~~~~~a 106 (323)
T COG0332 60 ARKALEDAGI---SPDDID----LIIVATSTPD--------------------------HLFPSTACLVQARLGLGGAPA 106 (323)
T ss_pred HHHHHHHcCC---CHHHCC----EEEEEcCCcc--------------------------cCCChHHHHHHHHhCCCCcce
Confidence 9999999999 666776 4666654221 112334888999999998 99
Q ss_pred eeecccChHHHHHHHHHHHHHHhCCCCEEEEEeeccccchhhhhHhhhccccccCCCCCCCCCCCCCCCCCCeeecceeE
Q 012221 213 YSISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWDKDRDGFVMGEGAG 292 (468)
Q Consensus 213 ~~v~~acas~l~Al~~A~~~I~~G~~d~~lvgG~e~~~~p~~~~~~~~~~~l~~~~~~~~~~~rpfd~~~~G~v~gEGaa 292 (468)
+.+..+|++.++||..|..+|++|.++.+||.|.|.+ ++. --|+.+...+++||||+
T Consensus 107 fDl~aaCsgf~yaL~~A~~~i~sG~~k~vLVVg~e~~---------------S~~--------ld~~dR~t~vlFgDGAg 163 (323)
T COG0332 107 FDLQAACSGFLYALSVADGLIRSGGYKNVLVVGAETL---------------SRI--------LDWTDRDTCVLFGDGAG 163 (323)
T ss_pred eechhhhHHHHHHHHHHHHHHHcCCCCEEEEEehhHh---------------hcc--------CCHhhccceEEEcCCce
Confidence 9999999999999999999999999999999999972 110 11334457889999999
Q ss_pred EEEecchhHHHhcCCceEEEEEEEEEcCCCCC-----------------C--CCCCCCh--------HHHHHHHHHHHHH
Q 012221 293 VLVMESLEHAMKRGAPIIAEYLGGAVNCDAYH-----------------M--TDPRADG--------LGVSSCIESSLED 345 (468)
Q Consensus 293 avvL~~~~~A~~~g~~i~a~i~g~~~~~d~~~-----------------~--~~~~~~~--------~~~~~~i~~al~~ 345 (468)
|+||++.+ .+. .+ .......|+.. . ....-++ ..+..+++++|+.
T Consensus 164 Avvl~~~~--~~~--~i----~~~~l~sdg~~~~~l~~~~~~~~~~~~~~~~~~~~m~Gr~vfk~av~~~~~~~~~~L~~ 235 (323)
T COG0332 164 AVVLEATE--DDN--GI----LDTDLGSDGSQGDLLYLPGGGSATPKEESGGGLLVMDGREVFKFAVRAMPKAIEEVLEK 235 (323)
T ss_pred EEEEecCC--CCc--Ce----eeeeeeccccCCCeeeccCCCCccccccccccceeeccHHHHHHHHHHHHHHHHHHHHH
Confidence 99999876 111 11 12222112110 0 0001122 3456689999999
Q ss_pred cCCCCCCcCEEEEccCCCccCCHHHHHHHHHHhccCCCceeeecccccCccccchhHHHHHHHHHHHhcCCcCCCCCCCC
Q 012221 346 AGVSPEEVNYINAHATSTLAGDLAEINAIKKVFKNTTGIKINATKSMIGHCLGAAGGLEAIATVKAITTGWLHPSINQFN 425 (468)
Q Consensus 346 Agl~~~dId~v~~h~~gt~~~D~~E~~al~~~f~~~~~~~v~s~k~~~Gh~~~AsG~~~l~~~~~~l~~~~~pp~~~~~~ 425 (468)
++++++||||+..|...... .+++.+.++. ..-.+-..--.+|++.+||=.+.|. ..++.|.+-
T Consensus 236 ~~l~~~dId~~vpHQan~ri-----~~~i~~~l~~-~~~k~~~~~~~yGNtsaAsiplaL~---~~~~~g~ik------- 299 (323)
T COG0332 236 AGLTPEDIDWFVPHQANLRI-----IEAIAKKLGI-PEEKVVVTVDKYGNTSAASIPLALD---EALREGRIK------- 299 (323)
T ss_pred cCCCHHHCCEEccccccHHH-----HHHHHHHcCC-CHHHHhhHHHHhcccccchHHHHHH---HHhhhCCCC-------
Confidence 99999999999999665433 3344444443 1112333334468877776444433 344555441
Q ss_pred CCCCCCcccccccccccCccEEEEEcccccCeeeEEEEe
Q 012221 426 PEPSVEFDTVANKKQQHEVNVAISNSFGFGGHNSVVAFS 464 (468)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~l~~s~g~gG~n~~~vl~ 464 (468)
+-...+..+||-|=+-.+++++
T Consensus 300 -----------------~Gd~ill~~fG~Gltwg~~~~r 321 (323)
T COG0332 300 -----------------PGDLVLLEAFGGGLTWGAALVR 321 (323)
T ss_pred -----------------CCCEEEEEeecCcceeeeEEEE
Confidence 1134555677776555566654
|
|
| >TIGR00747 fabH 3-oxoacyl-(acyl-carrier-protein) synthase III | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.2e-16 Score=155.21 Aligned_cols=289 Identities=19% Similarity=0.217 Sum_probs=181.4
Q ss_pred cEEEEeeceeccCC-CCHHHHHHHHHcCCCCccccCCCCCCCCCCccccccCCCCCCCCCCccccccCCHHHHHHHHHHH
Q 012221 57 RVVITGMGLVSVFG-NDVDAYYNKLLDGESGITMIDRFDASKFPTRFGGQIRGFSAEGYIDGKNDRRLDDCLRYCIVAGK 135 (468)
Q Consensus 57 ~V~ItG~g~~~p~g-~~~~~~~~~L~~G~~~i~~~~~~~~~~~~~~~~g~v~~~d~~~~i~~~~~~~~d~~~~l~l~a~~ 135 (468)
.+.|.++|...|.- .+.+++.+.+...... +. ...++ ..+.+.. .-.....|+.+|++
T Consensus 2 ~~~I~~i~~~~P~~~~~~~~~~~~~~~~~~~---i~--~~~gi-----------~~r~~~~-----~~~~~~~la~~A~~ 60 (318)
T TIGR00747 2 YAGILGTGSYLPEKVLTNADLEKMVDTSDEW---IV--TRTGI-----------KERRIAA-----DDETSSTMGFEAAK 60 (318)
T ss_pred CCEEEEEEEECCCceecHHHHHHhcCCchHH---ee--cccCc-----------eEEEECC-----CCCCHHHHHHHHHH
Confidence 37899999999998 6788887755321000 00 00011 0000000 11235789999999
Q ss_pred HHHHHcCCCCccccccccccceEEEeecCCCccchHHHHHHHHHhCCCCcCCcCcchhhhhhhHHHHhhhhCCCC-ccee
Q 012221 136 KALEDADLGADISKKIDKERAGVLVGTGMGGLTVFSDGVQALIEKGHRKITPFFIPYAITNMGSALLAIDLGFMG-PNYS 214 (468)
Q Consensus 136 ~AL~dAgl~~~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~ia~~lgl~G-p~~~ 214 (468)
+||+++|+ ++++++ .+++++..... .. ...+.+++..+|+++ +.+.
T Consensus 61 ~al~~agl---~~~~Id----~~i~~~~~~~~---------------------~~-----~~~a~~l~~~lGl~~~~~~~ 107 (318)
T TIGR00747 61 RAIENAGI---SKDDID----LIIVATTTPDH---------------------AF-----PSAACMVQAYLGIKGIPAFD 107 (318)
T ss_pred HHHHHcCC---CHHHCC----EEEEECCCCCC---------------------CC-----ChHHHHHHHHhCCCCCcEee
Confidence 99999999 556665 56666542211 00 112567888999998 8999
Q ss_pred ecccChHHHHHHHHHHHHHHhCCCCEEEEEeeccccchhhhhHhhhccccccCCCCCCCCCCCCCCCCCCeeecceeEEE
Q 012221 215 ISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWDKDRDGFVMGEGAGVL 294 (468)
Q Consensus 215 v~~acas~l~Al~~A~~~I~~G~~d~~lvgG~e~~~~p~~~~~~~~~~~l~~~~~~~~~~~rpfd~~~~G~v~gEGaaav 294 (468)
|..+|+|++.||..|+++|++|.++.+||+|+|..... .++.+ ....+++||||+|+
T Consensus 108 v~~~C~s~~~al~~A~~~i~~g~~~~~Lvv~~e~~~~~----------------------~~~~~-~~~~~~~GDGAaA~ 164 (318)
T TIGR00747 108 LSAACAGFIYALSVAKQYIESGKYKTVLVVGAEKLSST----------------------LDWTD-RGTCVLFGDGAGAV 164 (318)
T ss_pred hhhhhHHHHHHHHHHHHHHHcCCCCEEEEEEehhhcCc----------------------CCcCC-CCeEEEEecceeEE
Confidence 99999999999999999999999999999999973211 01111 22356899999999
Q ss_pred EecchhHHHhcCCceEEEEEEEEEcCCCC---CCCCC-------CC--------------ChHHHHHHHHHHHHHcCCCC
Q 012221 295 VMESLEHAMKRGAPIIAEYLGGAVNCDAY---HMTDP-------RA--------------DGLGVSSCIESSLEDAGVSP 350 (468)
Q Consensus 295 vL~~~~~A~~~g~~i~a~i~g~~~~~d~~---~~~~~-------~~--------------~~~~~~~~i~~al~~Agl~~ 350 (468)
||++.+... . |.......++. ....| .. ......++++++|+++|+++
T Consensus 165 lL~~~~~~~----~----i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~ 236 (318)
T TIGR00747 165 VLGESEDPG----G----IISTHLGADGTQGEALYLPAGGRPTSGPSPFITMEGNEVFKHAVRKMGDVVEETLEANGLDP 236 (318)
T ss_pred EEeecCCCC----c----EEEEEEEEcCCCcceEEECCCCcCCCCCCCceEECCHHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence 998754321 1 22222222221 00000 00 01234567899999999999
Q ss_pred CCcCEEEEccCCCccCCHHHHHHHHHHhccC-CCceeeecccccCccccchhHHHHHHHHHHHhcCCcCCCCCCCCCCCC
Q 012221 351 EEVNYINAHATSTLAGDLAEINAIKKVFKNT-TGIKINATKSMIGHCLGAAGGLEAIATVKAITTGWLHPSINQFNPEPS 429 (468)
Q Consensus 351 ~dId~v~~h~~gt~~~D~~E~~al~~~f~~~-~~~~v~s~k~~~Gh~~~AsG~~~l~~~~~~l~~~~~pp~~~~~~~~~~ 429 (468)
+||+|+..|..+.+..+ .+.+.++-. +++. ..-..+||+.+|+=.+.+..+ ++++.+.
T Consensus 237 ~di~~~~~h~~~~~~~~-----~~~~~lgi~~~k~~--~~~~~~Gn~~sas~~~~L~~~---~~~~~~~----------- 295 (318)
T TIGR00747 237 EDIDWFVPHQANLRIIE-----ALAKRLELDMSQVV--KTVHKYGNTSAASIPLALDEL---LRTGRIK----------- 295 (318)
T ss_pred HHCCEEEECCCCHHHHH-----HHHHHcCCCHHHee--ehHhhhCCHHHHHHHHHHHHH---HHcCCCC-----------
Confidence 99999999988765433 233444431 1222 223448998888766666543 3444321
Q ss_pred CCcccccccccccCccEEEEEcccccCeeeEEEEe
Q 012221 430 VEFDTVANKKQQHEVNVAISNSFGFGGHNSVVAFS 464 (468)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~l~~s~g~gG~n~~~vl~ 464 (468)
+-+.++.-+||.|.+-.+++|+
T Consensus 296 -------------~Gd~vll~~~G~G~t~~~~~l~ 317 (318)
T TIGR00747 296 -------------PGDLLLLVAFGGGLTWGAALVR 317 (318)
T ss_pred -------------CCCEEEEEEEehhheeeEEEEE
Confidence 1235666788998888888775
|
Active site residues include Cys112, His244 and Asn274 of E. coli FabH. Cys-112 is the site of acyl group attachment. |
| >KOG1391 consensus Acetyl-CoA acetyltransferase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.75 E-value=5.5e-17 Score=145.04 Aligned_cols=248 Identities=22% Similarity=0.358 Sum_probs=170.2
Q ss_pred HHHHHHHHHHHHHHHcCCCCccccccccccceEEEeecCCCccchHHHHHHHHHhCCCCcCCcCcchhhhhhhHHHHhhh
Q 012221 126 CLRYCIVAGKKALEDADLGADISKKIDKERAGVLVGTGMGGLTVFSDGVQALIEKGHRKITPFFIPYAITNMGSALLAID 205 (468)
Q Consensus 126 ~~~l~l~a~~~AL~dAgl~~~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~ia~~ 205 (468)
+..|...|++.||+.+++. .+.+| -|++|+-..... + . -.++.++...
T Consensus 28 aTdL~~~AakAAL~aa~v~---~e~VD----~VI~GNV~aSSs---D--------------g--------IYl~RHvGL~ 75 (396)
T KOG1391|consen 28 ATDLGVVAAKAALKAANVG---AEAVD----HVIMGNVLASSS---D--------------G--------IYLARHVGLR 75 (396)
T ss_pred hhhHHHHHHHHHHhhcCCC---hhhcc----eEEEeeeeeccC---C--------------c--------eEeeeccccc
Confidence 5678888999999999994 44556 355554211000 0 0 0012233333
Q ss_pred hCC--CCcceeecccChHHHHHHHHHHHHHHhCCCCEEEEEeeccccc-hh--------------------hhh------
Q 012221 206 LGF--MGPNYSISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAII-PI--------------------GLG------ 256 (468)
Q Consensus 206 lgl--~Gp~~~v~~acas~l~Al~~A~~~I~~G~~d~~lvgG~e~~~~-p~--------------------~~~------ 256 (468)
.|+ .-|..+|+.-|.||.++|-.+++.|.-|+++++|+||+|.+.. |+ .|.
T Consensus 76 ~GvP~e~pALtiNRLCGSGFQsiVNgaQ~I~vgea~ivL~GGtEnMSq~Pf~vRnvRFGT~LG~~y~lED~LW~sLtD~y 155 (396)
T KOG1391|consen 76 VGVPKETPALTINRLCGSGFQSIVNGAQEICVGEAEIVLCGGTENMSQAPFCVRNVRFGTKLGSDYKLEDSLWVSLTDQY 155 (396)
T ss_pred cCCcCccCceeehhhhcccHHHHHhhHHHhhcCcceEEEecCccccccCcceeeeeeeccccccccchhhhHhhhccchh
Confidence 443 2388999999999999999999999999999999999997210 00 000
Q ss_pred ------------------------Hhh-----------hccccccC-------------CCCCCCCCCC-----------
Q 012221 257 ------------------------GFV-----------ACRALSQR-------------NDDPQTASRP----------- 277 (468)
Q Consensus 257 ------------------------~~~-----------~~~~l~~~-------------~~~~~~~~rp----------- 277 (468)
.|. ..+..... ...-+...||
T Consensus 156 ~kLpMa~TAEnL~~qyKisRee~DefaL~SQ~~Wkkaq~aG~fn~Ei~pI~~K~kkge~~f~vDEHpRp~TT~E~L~KLp 235 (396)
T KOG1391|consen 156 VKLPMAMTAENLAVQYKISREECDEFALQSQQRWKKAQDAGYFNDEIAPIEVKTKKGEQTFQVDEHPRPQTTLEQLQKLP 235 (396)
T ss_pred hhcchhhhHHHhhhhheecHHHhhHHHhhhHHHHHhhhhcCcccccccceEEeeccCceeeEecCCCCccchHHHHhhCC
Confidence 000 00000000 0000111221
Q ss_pred CCCCCCCee-------ecceeEEEEecchhHHHhcCCceEEEEEEEEEcCCCCCCCCCCCChHHHHHHHHHHHHHcCCCC
Q 012221 278 WDKDRDGFV-------MGEGAGVLVMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAGVSP 350 (468)
Q Consensus 278 fd~~~~G~v-------~gEGaaavvL~~~~~A~~~g~~i~a~i~g~~~~~d~~~~~~~~~~~~~~~~~i~~al~~Agl~~ 350 (468)
---..||.+ .+|||+++++.+++..++.+.+++++|.+|.... .+|.-.+.+...+|+.+|+.+|+..
T Consensus 236 pvFkKdG~VtAGnASGi~DGA~AvivAsEdavK~~NlkPLARiVays~vG-----cdP~IMGIGPvPAI~~vLKksGlkl 310 (396)
T KOG1391|consen 236 PVFKKDGTVTAGNASGIADGAGAVIVASEDAVKKHNLKPLARIVAYSVVG-----CDPSIMGIGPVPAISGVLKKSGLKL 310 (396)
T ss_pred chhccCCeeeccccccccCCceeEEEechhHHhhcCCchhhhhheeeeec-----cChhhccccCcHHHHHHHHHcCCcc
Confidence 011245655 6899999999999999999999999999998754 3455556666788999999999999
Q ss_pred CCcCEEEEccCCCccCCHHHHHHHHHHhcc-CCCceeeecccccCccccchhHHHHHHHHHHHhcC
Q 012221 351 EEVNYINAHATSTLAGDLAEINAIKKVFKN-TTGIKINATKSMIGHCLGAAGGLEAIATVKAITTG 415 (468)
Q Consensus 351 ~dId~v~~h~~gt~~~D~~E~~al~~~f~~-~~~~~v~s~k~~~Gh~~~AsG~~~l~~~~~~l~~~ 415 (468)
.|||.||.+-.+.+ ...|..+.++- .++++|++..-.+||++||||..-....++.|+++
T Consensus 311 ~DiDl~EvNEAFAp-----Q~LAv~r~L~ld~sKlNVNGGAIALGHPLgaSGsRIt~HlVHEL~Rr 371 (396)
T KOG1391|consen 311 KDIDLVEVNEAFAP-----QYLAVERSLDLDISKLNVNGGAIALGHPLGASGSRITAHLVHELRRR 371 (396)
T ss_pred cccceEEechhhch-----HHHHHHHhhCCChhhccccCceeeccCccccCcchhhHHHHHHHHHc
Confidence 99999998755543 34455555543 45789999999999999999999999999999875
|
|
| >PRK09258 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed | Back alignment and domain information |
|---|
Probab=99.73 E-value=4e-16 Score=154.71 Aligned_cols=311 Identities=19% Similarity=0.185 Sum_probs=186.6
Q ss_pred CcEEEEeeceeccCC-CCHHHHHHHHHcCC--CCccccCCCC-CCCCCCccccccCCCCCCCCCCccccccCCHHHHHHH
Q 012221 56 KRVVITGMGLVSVFG-NDVDAYYNKLLDGE--SGITMIDRFD-ASKFPTRFGGQIRGFSAEGYIDGKNDRRLDDCLRYCI 131 (468)
Q Consensus 56 ~~V~ItG~g~~~p~g-~~~~~~~~~L~~G~--~~i~~~~~~~-~~~~~~~~~g~v~~~d~~~~i~~~~~~~~d~~~~l~l 131 (468)
+.|.|+|+|...|.- .+.+++.+.+.+.. ..+.+ .++. ..+...+. +..+ -.....|+.
T Consensus 4 ~~v~I~~~g~~lP~~~v~~~~~~~~~~~~~~~~~~~~-~~i~~~~Gi~~R~-----------~~~~-----~~~~~~la~ 66 (338)
T PRK09258 4 SNVAILSLAYELAPVVVTSSEIEERLAPLYERLRLPP-GQLEALTGIRERR-----------WWPE-----GTQLSDGAI 66 (338)
T ss_pred cceEEEEEEecCCCccCcHHHHHHHhhhcccccCCCh-hHhhhhcCceeEe-----------cCCC-----CCCHHHHHH
Confidence 459999999999998 56677766543211 11110 0000 00111110 1111 112467999
Q ss_pred HHHHHHHHHcCCCCccccccccccceEEEeecCCCccchHHHHHHHHHhCCCCcCCcCcchhhhhhhHHHHhhhhCCCC-
Q 012221 132 VAGKKALEDADLGADISKKIDKERAGVLVGTGMGGLTVFSDGVQALIEKGHRKITPFFIPYAITNMGSALLAIDLGFMG- 210 (468)
Q Consensus 132 ~a~~~AL~dAgl~~~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~ia~~lgl~G- 210 (468)
+|+++||+++|+ ++++++ .+++++...+. .....+.++...+|++.
T Consensus 67 ~Aa~~aL~~ag~---~~~~Id----~li~~s~~~~~--------------------------~~p~~a~~v~~~lgl~~~ 113 (338)
T PRK09258 67 AAGRKALAEAGI---DPSDIG----LLINTSVCRDY--------------------------LEPATACRVHHNLGLPKS 113 (338)
T ss_pred HHHHHHHHHcCC---CHHHCC----EEEEEcCCCCC--------------------------CCChHHHHHHHHcCCCCC
Confidence 999999999999 556666 46666532110 11124677889999963
Q ss_pred -cceeecccChHHHHHHHHHHHHHHhCCCCEEEEEeeccccchhhhhHhhhccccccCCCCCCCCCCCCCCCCCCeeecc
Q 012221 211 -PNYSISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWDKDRDGFVMGE 289 (468)
Q Consensus 211 -p~~~v~~acas~l~Al~~A~~~I~~G~~d~~lvgG~e~~~~p~~~~~~~~~~~l~~~~~~~~~~~rpfd~~~~G~v~gE 289 (468)
+.+.|..+|+|++.||..|..+|++|.++.+||+++|.. +...-..+.. ... +.....+|+.....+.+||
T Consensus 114 ~~~~~v~~~C~~~~~al~~A~~~i~~g~~~~~Lvv~~e~~-s~~~~~~~~~--~~~-----~~~~~~~~~~~~~~~~~GD 185 (338)
T PRK09258 114 CANFDVSNACLGFLNGMLDAANMIELGQIDYALVVSGESA-REIVEATIDR--LLA-----PETTREDFAQSFATLTLGS 185 (338)
T ss_pred CceeehhhhhHHHHHHHHHHHHHHHcCCCCEEEEEEeccc-chhccchhhh--hcc-----CccchhhhhhccceEEecc
Confidence 789999999999999999999999999999999999973 2221111111 111 1111245666667889999
Q ss_pred eeEEEEecchhHHHhcCCceEEEEEEEEEcCCCCCCC--CC-----CCCh--------HHHHHHHHHHHHHcCCCCCCcC
Q 012221 290 GAGVLVMESLEHAMKRGAPIIAEYLGGAVNCDAYHMT--DP-----RADG--------LGVSSCIESSLEDAGVSPEEVN 354 (468)
Q Consensus 290 GaaavvL~~~~~A~~~g~~i~a~i~g~~~~~d~~~~~--~~-----~~~~--------~~~~~~i~~al~~Agl~~~dId 354 (468)
||+|+||++.+. ...+. .+.+.....++.+.. .. ..++ .....+++++|+++|++++|||
T Consensus 186 GA~A~ll~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~g~~~~did 260 (338)
T PRK09258 186 GAAAAVLTRGSL-HPRGH----RLLGGVTRAATEHHELCQGGRDGMRTDAVGLLKEGVELAVDTWEAFLAQLGWAVEQVD 260 (338)
T ss_pred cceEEEEecCCC-CCCcc----eeeeeeeecCCCcccccccCccceEEcHHHHHHHHHHHHHHHHHHHHHHcCCCHHHCC
Confidence 999999997542 11222 233433322222110 00 0111 2334578899999999999999
Q ss_pred EEEEccCCCccCCHHHHHHHHHHhccC-CCceeeecccccCccccchhHHHHHHHHHHHhcCCcCCCCCCCCCCCCCCcc
Q 012221 355 YINAHATSTLAGDLAEINAIKKVFKNT-TGIKINATKSMIGHCLGAAGGLEAIATVKAITTGWLHPSINQFNPEPSVEFD 433 (468)
Q Consensus 355 ~v~~h~~gt~~~D~~E~~al~~~f~~~-~~~~v~s~k~~~Gh~~~AsG~~~l~~~~~~l~~~~~pp~~~~~~~~~~~~~~ 433 (468)
++..|..+.+..+ .+.+.++-. +++.. .. ..+||+.+|+=.+.+..+ ++.+.+
T Consensus 261 ~~i~H~~~~~~~~-----~~~~~lgl~~~k~~~-~~-~~~GN~~sas~~~~L~~~---~~~g~~---------------- 314 (338)
T PRK09258 261 RVICHQVGAAHTR-----AILKALGIDPEKVFT-TF-PTLGNMGPASLPITLAMA---AEEGFL---------------- 314 (338)
T ss_pred EEecCCCCHHHHH-----HHHHHhCCCHHHcee-hH-hhhCCcHHhHHHHHHHHH---HHhCCC----------------
Confidence 9999988776544 334444331 12222 22 468998888755555544 334322
Q ss_pred cccccccccCccEEEEEcccccCeeeEEEE
Q 012221 434 TVANKKQQHEVNVAISNSFGFGGHNSVVAF 463 (468)
Q Consensus 434 ~~~~~~~~~~~~~~l~~s~g~gG~n~~~vl 463 (468)
.+-..++..+||.|-+-..+++
T Consensus 315 --------~~Gd~vll~~~G~G~s~~~~~~ 336 (338)
T PRK09258 315 --------KPGDRVALLGIGSGLNCSMLEV 336 (338)
T ss_pred --------CCCCEEEEEEechhHhhHhHee
Confidence 1124566678888765555544
|
|
| >PRK12879 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.4e-15 Score=149.96 Aligned_cols=294 Identities=19% Similarity=0.194 Sum_probs=180.5
Q ss_pred CcEEEEeeceeccCC-CCHHHHHHHHHcCCCCccccCCCCCCCCCCccccccCCCCCCCCCCccccccCCHHHHHHHHHH
Q 012221 56 KRVVITGMGLVSVFG-NDVDAYYNKLLDGESGITMIDRFDASKFPTRFGGQIRGFSAEGYIDGKNDRRLDDCLRYCIVAG 134 (468)
Q Consensus 56 ~~V~ItG~g~~~p~g-~~~~~~~~~L~~G~~~i~~~~~~~~~~~~~~~~g~v~~~d~~~~i~~~~~~~~d~~~~l~l~a~ 134 (468)
..+.|.|+|...|.- .+.+++.+.+. .+ -..+ ++..++..+. +..+ -.....|+.+|+
T Consensus 3 ~~~~I~~ig~~~P~~~v~~~e~~~~~~--~~-~~~i--~~~~Gi~~r~-----------~~~~-----~~~~~~la~~A~ 61 (325)
T PRK12879 3 SYARITGIGTYVPPRVLTNDDLETFID--TS-DEWI--VQRTGIKERR-----------IAHV-----EEYTSDLAIKAA 61 (325)
T ss_pred CCCEEEEEEEECCCcEEcHHHHHHhcC--CC-HHHh--hhccCceEEE-----------ECCC-----CCCHHHHHHHHH
Confidence 358999999999998 57777765431 10 0000 0001111110 0111 123578999999
Q ss_pred HHHHHHcCCCCccccccccccceEEEeecCCCccchHHHHHHHHHhCCCCcCCcCcchhhhhhhHHHHhhhhCCCC-cce
Q 012221 135 KKALEDADLGADISKKIDKERAGVLVGTGMGGLTVFSDGVQALIEKGHRKITPFFIPYAITNMGSALLAIDLGFMG-PNY 213 (468)
Q Consensus 135 ~~AL~dAgl~~~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~ia~~lgl~G-p~~ 213 (468)
++||+++|+ +++++| .+++++...+. . ....+.+++..+|++. +.+
T Consensus 62 ~~al~~ag~---~~~~Id----~li~~~~~~~~---------------------~-----~~~~a~~l~~~lg~~~~~~~ 108 (325)
T PRK12879 62 ERALARAGL---DAEDID----LIIVATTTPDY---------------------L-----FPSTASQVQARLGIPNAAAF 108 (325)
T ss_pred HHHHHHcCC---CHHHCC----EEEEEcCCCCC---------------------C-----CChHHHHHHHHhCCCCCcEE
Confidence 999999999 555665 46666542111 0 1123577888899974 889
Q ss_pred eecccChHHHHHHHHHHHHHHhCCCCEEEEEeeccccchhhhhHhhhccccccCCCCCCCCCCCCCCCCCCeeecceeEE
Q 012221 214 SISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWDKDRDGFVMGEGAGV 293 (468)
Q Consensus 214 ~v~~acas~l~Al~~A~~~I~~G~~d~~lvgG~e~~~~p~~~~~~~~~~~l~~~~~~~~~~~rpfd~~~~G~v~gEGaaa 293 (468)
.+..+|++++.||..|.++|++|.++.+||+++|..... + .++.....+++||||+|
T Consensus 109 ~v~~~C~~~~~al~~A~~~l~~g~~~~~Lvv~~e~~s~~-----------~------------~~~~~~~~~~~GDgAaA 165 (325)
T PRK12879 109 DINAACAGFLYGLETANGLITSGLYKKVLVIGAERLSKV-----------T------------DYTDRTTCILFGDGAGA 165 (325)
T ss_pred EECccchHHHHHHHHHHHHHHcCCCCEEEEEEehhhcCc-----------C------------CccccCceEEEeecceE
Confidence 999999999999999999999999999999999962110 0 01112345789999999
Q ss_pred EEecchhHHHhcCCceEEEE-------------EEEEEcCCC---CCCCCCCCCh--------HHHHHHHHHHHHHcCCC
Q 012221 294 LVMESLEHAMKRGAPIIAEY-------------LGGAVNCDA---YHMTDPRADG--------LGVSSCIESSLEDAGVS 349 (468)
Q Consensus 294 vvL~~~~~A~~~g~~i~a~i-------------~g~~~~~d~---~~~~~~~~~~--------~~~~~~i~~al~~Agl~ 349 (468)
+||++.+. +..+.... .+.+...+. ........++ ..+.++++++|+++|++
T Consensus 166 ~ll~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~g~~ 241 (325)
T PRK12879 166 VVLEATEN----EPGFIDYVLGTDGDGGDILYRTGLGTTMDRDALSGDGYIVQNGREVFKWAVRTMPKGARQVLEKAGLT 241 (325)
T ss_pred EEEEecCC----CCCeEEEEEEEcCCCCCeEEEcCCCCCCCccccccCccEEEcCHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 99997543 11121111 111110000 0000000111 22456789999999999
Q ss_pred CCCcCEEEEccCCCccCCHHHHHHHHHHhccC-CCceeeecccccCccccchhHHHHHHHHHHHhcCCcCCCCCCCCCCC
Q 012221 350 PEEVNYINAHATSTLAGDLAEINAIKKVFKNT-TGIKINATKSMIGHCLGAAGGLEAIATVKAITTGWLHPSINQFNPEP 428 (468)
Q Consensus 350 ~~dId~v~~h~~gt~~~D~~E~~al~~~f~~~-~~~~v~s~k~~~Gh~~~AsG~~~l~~~~~~l~~~~~pp~~~~~~~~~ 428 (468)
++|||++..|..+.+. .+.+.+.++-. +++.. ....+||+.+|+=.+.+..+ ++++.+.
T Consensus 242 ~~did~~~~h~~~~~~-----~~~~~~~lg~~~~~~~~--~~~~~Gn~~sas~~~~L~~~---~~~g~~~---------- 301 (325)
T PRK12879 242 KDDIDWVIPHQANLRI-----IESLCEKLGIPMEKTLV--SVEYYGNTSAATIPLALDLA---LEQGKIK---------- 301 (325)
T ss_pred HHHCCEEEECCCCHHH-----HHHHHHHcCCCHHHhhh--hHhhhCchHHHHHHHHHHHH---HHcCCCC----------
Confidence 9999999999766543 33455555431 12222 45788999888766665443 4444221
Q ss_pred CCCcccccccccccCccEEEEEcccccCeeeEEEEe
Q 012221 429 SVEFDTVANKKQQHEVNVAISNSFGFGGHNSVVAFS 464 (468)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~l~~s~g~gG~n~~~vl~ 464 (468)
+-...+.-+||.|-+-.+++++
T Consensus 302 --------------~Gd~vll~~~G~G~~~~~~l~~ 323 (325)
T PRK12879 302 --------------PGDTLLLYGFGAGLTWAALLVK 323 (325)
T ss_pred --------------CCCEEEEEEEchhhhhEEEEEE
Confidence 1235666799998887888875
|
|
| >cd00830 KAS_III Ketoacyl-acyl carrier protein synthase III (KASIII) initiates the elongation in type II fatty acid synthase systems | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.3e-16 Score=154.20 Aligned_cols=260 Identities=24% Similarity=0.310 Sum_probs=165.9
Q ss_pred EEEEeeceeccCC-CCHHHHHHHHHcCCCCccccCCCCCCCCCCccccccCCCCCCCCCCccccccCCHHHHHHHHHHHH
Q 012221 58 VVITGMGLVSVFG-NDVDAYYNKLLDGESGITMIDRFDASKFPTRFGGQIRGFSAEGYIDGKNDRRLDDCLRYCIVAGKK 136 (468)
Q Consensus 58 V~ItG~g~~~p~g-~~~~~~~~~L~~G~~~i~~~~~~~~~~~~~~~~g~v~~~d~~~~i~~~~~~~~d~~~~l~l~a~~~ 136 (468)
+.|+|+|...|.- .+.+++.+.+ |.. ...+ +...++ ....+.. .-.....|+.+|+++
T Consensus 2 ~~I~~i~~~lP~~~~~~~~~~~~~--~~~-~~~~--~~~~Gi-----------~~r~~~~-----~~~~~~~la~~A~~~ 60 (320)
T cd00830 2 ARILGIGSYLPERVVTNDELEKRL--DTS-DEWI--RTRTGI-----------RERRIAD-----PGETTSDLAVEAAKK 60 (320)
T ss_pred CEEEEEEEECCCcEEcHHHHHHHc--CCC-HHHh--hhccCc-----------eEEeeCC-----CCCCHHHHHHHHHHH
Confidence 6799999999987 5777777765 211 0000 000111 1000011 112357899999999
Q ss_pred HHHHcCCCCccccccccccceEEEeecCCCccchHHHHHHHHHhCCCCcCCcCcchhhhhhhHHHHhhhhCC-CCcceee
Q 012221 137 ALEDADLGADISKKIDKERAGVLVGTGMGGLTVFSDGVQALIEKGHRKITPFFIPYAITNMGSALLAIDLGF-MGPNYSI 215 (468)
Q Consensus 137 AL~dAgl~~~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~ia~~lgl-~Gp~~~v 215 (468)
||+++|+ +++++| .+++++..... . ....+.+++..+|+ +.+.+.|
T Consensus 61 al~~ag~---~~~~Id----~li~~~~~~~~---------------------~-----~~~~~~~l~~~lg~~~~~~~~v 107 (320)
T cd00830 61 ALEDAGI---DADDID----LIIVATSTPDY---------------------L-----FPATACLVQARLGAKNAAAFDI 107 (320)
T ss_pred HHHHcCC---CHHHCC----EEEEEcCCCCC---------------------C-----CCcHHHHHHHHhCCCCCcEeec
Confidence 9999999 556666 56666542211 0 11236678888999 4588899
Q ss_pred cccChHHHHHHHHHHHHHHhCCCCEEEEEeeccccchhhhhHhhhccccccCCCCCCCCCCCCCCCCCCeeecceeEEEE
Q 012221 216 STACATSNYCFYAAANHIRRGEADLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWDKDRDGFVMGEGAGVLV 295 (468)
Q Consensus 216 ~~acas~l~Al~~A~~~I~~G~~d~~lvgG~e~~~~p~~~~~~~~~~~l~~~~~~~~~~~rpfd~~~~G~v~gEGaaavv 295 (468)
..+|+|++.||..|.++|++|.++.+||+++|... .. . .|+....++++||||+|+|
T Consensus 108 ~~~C~s~~~al~~A~~~i~~g~~~~vLvv~~e~~s-~~---------------------~-~~~~~~~~~~~GDgAaA~l 164 (320)
T cd00830 108 NAACSGFLYGLSTAAGLIRSGGAKNVLVVGAETLS-RI---------------------L-DWTDRSTAVLFGDGAGAVV 164 (320)
T ss_pred cccchHHHHHHHHHHHHHHcCCCCEEEEEEehhhc-cc---------------------c-CcccCCceEEEeccceEEE
Confidence 99999999999999999999999999999999721 11 0 0333456789999999999
Q ss_pred ecchhHHHhcCCceEEEEEEEEEcCCCCC-----CCC-----C-----------CCC--------hHHHHHHHHHHHHHc
Q 012221 296 MESLEHAMKRGAPIIAEYLGGAVNCDAYH-----MTD-----P-----------RAD--------GLGVSSCIESSLEDA 346 (468)
Q Consensus 296 L~~~~~A~~~g~~i~a~i~g~~~~~d~~~-----~~~-----~-----------~~~--------~~~~~~~i~~al~~A 346 (468)
|++.+. +..+ .++...+++.. ... | ... .....++++++|+++
T Consensus 165 l~~~~~----~~~i----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~ 236 (320)
T cd00830 165 LEATEE----DPGI----LDSVLGSDGSGADLLTIPAGGSRSPFEDAEGGDPYLVMDGREVFKFAVRLMPESIEEALEKA 236 (320)
T ss_pred EEecCC----CCcE----EEEEEEEcCCCCCeEEeCCCCcCCccccccccCccEEEcChHHHHHHHHhhHHHHHHHHHHc
Confidence 997543 2222 33333222210 000 0 000 123457899999999
Q ss_pred CCCCCCcCEEEEccCCCccCCHHHHHHHHHHhccCCCceeeecccccCccccchhHHHHHHH
Q 012221 347 GVSPEEVNYINAHATSTLAGDLAEINAIKKVFKNTTGIKINATKSMIGHCLGAAGGLEAIAT 408 (468)
Q Consensus 347 gl~~~dId~v~~h~~gt~~~D~~E~~al~~~f~~~~~~~v~s~k~~~Gh~~~AsG~~~l~~~ 408 (468)
|++++|||++..|..+....+. +.+.++-. .-.+......+||+.+|+=.+.+..+
T Consensus 237 g~~~~di~~~~~h~~~~~~~~~-----~~~~lgl~-~~~~~~~~~~~Gn~~sas~~~~L~~~ 292 (320)
T cd00830 237 GLTPDDIDWFVPHQANLRIIEA-----VAKRLGLP-EEKVVVNLDRYGNTSAASIPLALDEA 292 (320)
T ss_pred CCCHHHCCEEEECCCCHHHHHH-----HHHHhCCC-HHHhhhhHHhhCcHHHHHHHHHHHHH
Confidence 9999999999999887765332 34444431 11122344578999888766666554
|
It is found in bacteria and plants. Elongation of fatty acids in the type II systems occurs by Claisen condensation of malonyl-acyl carrier protein (ACP) with acyl-ACP. KASIII initiates this process by specifically using acetyl-CoA over acyl-CoA. |
| >KOG1389 consensus 3-oxoacyl CoA thiolase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.4e-17 Score=150.00 Aligned_cols=192 Identities=23% Similarity=0.385 Sum_probs=140.6
Q ss_pred CCcceeecccChHHHHHHHHHHHHHHhCCCCEEEEEeeccccchh--hhhH--------hh-------hcccccc-----
Q 012221 209 MGPNYSISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAIIPI--GLGG--------FV-------ACRALSQ----- 266 (468)
Q Consensus 209 ~Gp~~~v~~acas~l~Al~~A~~~I~~G~~d~~lvgG~e~~~~p~--~~~~--------~~-------~~~~l~~----- 266 (468)
+-|..+|+.-|+||++|+..-...|+.|.+|+-|.+|+|++.+.+ .+.+ |. .++..++
T Consensus 113 tvpv~tvNRqCsSGLqaVadiA~~Ir~G~ydIGla~GvESMt~~~~~g~~g~~~~~~~~~~~A~dCllpmGitsEnva~r 192 (435)
T KOG1389|consen 113 TVPVRTVNRQCSSGLQAVADIAAKIRAGFYDIGLAAGVESMTTNYPRGWPGSINPRLQKFEKARDCLLPMGITSENVAER 192 (435)
T ss_pred ccchhhhhhhhhhHHHHHHHHHHHHhcCceeeecccchhhhcccCCCCCccccChhhhhhhHHhhcccccccchHHHHHH
Confidence 458899999999999999999999999999999999999854331 1110 00 0000000
Q ss_pred -------------------------------------CCCCCCCCCCCCCC----------------------CCCCee-
Q 012221 267 -------------------------------------RNDDPQTASRPWDK----------------------DRDGFV- 286 (468)
Q Consensus 267 -------------------------------------~~~~~~~~~rpfd~----------------------~~~G~v- 286 (468)
.-.+|.+..+|.-. ..||..
T Consensus 193 fgvsR~eqD~~Av~S~kkAa~A~~~G~f~dEIiPv~tkv~D~~g~~k~i~v~~DeGiRp~ttl~~l~klkpvFkkdGttT 272 (435)
T KOG1389|consen 193 FGVSREEQDEAAVDSHKKAAAATAKGKFKDEIIPVKTKVVDPKGDEKPITVSVDEGIRPNTTLESLAKLKPVFKKDGTTT 272 (435)
T ss_pred hCCChhhhhHHHHHHHHHHHHHhhcCcchhheeeeeeeccCCcCCccceeEecCCCCCCCcchhHHhhcchhhhcCCccc
Confidence 00022221111111 012322
Q ss_pred ------ecceeEEEEecchhHHHhcCCceEEEEEEEEEcCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCcCEEEEcc
Q 012221 287 ------MGEGAGVLVMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAGVSPEEVNYINAHA 360 (468)
Q Consensus 287 ------~gEGaaavvL~~~~~A~~~g~~i~a~i~g~~~~~d~~~~~~~~~~~~~~~~~i~~al~~Agl~~~dId~v~~h~ 360 (468)
.+||+++++|.+...|.+.|.+++++.+.+.... ..|.-.|.+...+|..+|+.+|+..+|||++|++
T Consensus 273 agNsSQvSDGa~aVLLmkRs~A~qlgLPvlgvfr~f~~vG-----v~P~iMGiGPavAIp~alk~aGL~v~did~FEIN- 346 (435)
T KOG1389|consen 273 AGNSSQVSDGAGAVLLMKRSVAMQLGLPVLGVFRDFAAVG-----VPPAIMGIGPAVAIPKALKAAGLEVDDIDLFEIN- 346 (435)
T ss_pred cCchhhcccchhhhhhhhhhhHhhcCCceeEEeeeeeeec-----CCHHHcCCCchhhhHHHHHHcCCcccccceeehh-
Confidence 7999999999999999999999999999887765 4455566677889999999999999999999973
Q ss_pred CCCccCCHHHHHHHHHHhc------cCCCceeeecccccCccccchhHHHHHHHHHHHhcC
Q 012221 361 TSTLAGDLAEINAIKKVFK------NTTGIKINATKSMIGHCLGAAGGLEAIATVKAITTG 415 (468)
Q Consensus 361 ~gt~~~D~~E~~al~~~f~------~~~~~~v~s~k~~~Gh~~~AsG~~~l~~~~~~l~~~ 415 (468)
|+-|-+-++. +.+++++++..-.+||++||+|...++..+.-|+++
T Consensus 347 ---------EAFAsQ~~yc~~KL~ld~ekVN~~GGaiAlGHPlGatGAR~VaTlL~emKrr 398 (435)
T KOG1389|consen 347 ---------EAFASQALYCRNKLGLDPEKVNVNGGAIALGHPLGATGARCVATLLHEMKRR 398 (435)
T ss_pred ---------HHHHHHHHHHHHHhCCCHHHcCCCCceeeccCCcCCccHhHHHHHHHHHHhh
Confidence 4444333332 245688999999999999999999999999999875
|
|
| >PLN02326 3-oxoacyl-[acyl-carrier-protein] synthase III | Back alignment and domain information |
|---|
Probab=99.70 E-value=8.2e-15 Score=147.09 Aligned_cols=290 Identities=20% Similarity=0.249 Sum_probs=177.2
Q ss_pred CcEEEEeeceeccCC-CCHHHHHHHHHcCCCCccccCCCCCCCCCCccccccCCCCCCCCCCccccccCCHHHHHHHHHH
Q 012221 56 KRVVITGMGLVSVFG-NDVDAYYNKLLDGESGITMIDRFDASKFPTRFGGQIRGFSAEGYIDGKNDRRLDDCLRYCIVAG 134 (468)
Q Consensus 56 ~~V~ItG~g~~~p~g-~~~~~~~~~L~~G~~~i~~~~~~~~~~~~~~~~g~v~~~d~~~~i~~~~~~~~d~~~~l~l~a~ 134 (468)
.++.|+|+|...|.- .+.+++.+.+......+ ....++..+ .+..+. .+...|+.+|+
T Consensus 46 ~~~~I~g~g~~lP~~~v~n~el~~~~~~~~~~i-----~~~tGi~~R-----------~~~~~~-----~~~~~La~~Aa 104 (379)
T PLN02326 46 SGSKLVGCGSAVPKLLITNDDLSKLVDTSDEWI-----ATRTGIRNR-----------RVLSGD-----ETLTSLAVEAA 104 (379)
T ss_pred CCcEEEEEEEECCCceecHHHHHHhcCCchhhe-----ecccCcceE-----------eecCCC-----CCHHHHHHHHH
Confidence 468999999999998 56777755432100000 000111111 011111 23578999999
Q ss_pred HHHHHHcCCCCccccccccccceEEEeecCCCccchHHHHHHHHHhCCCCcCCcCcchhhhhhhHHHHhhhhCCCC-cce
Q 012221 135 KKALEDADLGADISKKIDKERAGVLVGTGMGGLTVFSDGVQALIEKGHRKITPFFIPYAITNMGSALLAIDLGFMG-PNY 213 (468)
Q Consensus 135 ~~AL~dAgl~~~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~ia~~lgl~G-p~~ 213 (468)
++||+++|+ ++++++ -+++++..+.. .. ..+..+...||+++ +++
T Consensus 105 ~~aL~~agi---~~~dId----~li~~s~~~~~----------------------~~-----~~a~~v~~~LG~~~~~~~ 150 (379)
T PLN02326 105 KKALEMAGV---DPEDVD----LVLLCTSSPDD----------------------LF-----GSAPQVQAALGCTNALAF 150 (379)
T ss_pred HHHHHHcCC---CHHHCC----EEEEEeCCCCc----------------------cC-----cHHHHHHHHhCCCCCcee
Confidence 999999999 555555 35555532110 00 12556888899876 778
Q ss_pred eecccChHHHHHHHHHHHHHHhCCCCEEEEEeeccccchhhhhHhhhccccccCCCCCCCCCCCCCCCCCCeeecceeEE
Q 012221 214 SISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWDKDRDGFVMGEGAGV 293 (468)
Q Consensus 214 ~v~~acas~l~Al~~A~~~I~~G~~d~~lvgG~e~~~~p~~~~~~~~~~~l~~~~~~~~~~~rpfd~~~~G~v~gEGaaa 293 (468)
.|..+|++++.||..|.++|++|.++.+||+|+|.. +.. . .|+.....+++||||+|
T Consensus 151 dv~~~Ca~~~~aL~~A~~~l~~g~~~~vLVv~~e~~-s~~---------------------~-~~~d~~~~~lfGDGAaA 207 (379)
T PLN02326 151 DLTAACSGFVLGLVTAARFIRGGGYKNVLVIGADAL-SRY---------------------V-DWTDRGTCILFGDGAGA 207 (379)
T ss_pred eccccchHHHHHHHHHHHHHHcCCCCEEEEEEechh-cCC---------------------C-CccccCceEEEcceeEE
Confidence 999999999999999999999999999999999962 110 0 12223456799999999
Q ss_pred EEecchhHHHhcCCceEEEEEEEEEcCCC------------C-----------CCCCC---------CCCh--------H
Q 012221 294 LVMESLEHAMKRGAPIIAEYLGGAVNCDA------------Y-----------HMTDP---------RADG--------L 333 (468)
Q Consensus 294 vvL~~~~~A~~~g~~i~a~i~g~~~~~d~------------~-----------~~~~~---------~~~~--------~ 333 (468)
+||++.+... ..++ ++...+++ . ....+ ...+ .
T Consensus 208 vlL~~~~~~~---~~i~----~~~~~t~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~ 280 (379)
T PLN02326 208 VVLQACDDDE---DGLL----GFDMHSDGNGHKHLHATFKGEDDDSSGGNTNGVGDFPPKKASYSCIQMNGKEVFKFAVR 280 (379)
T ss_pred EEEEEcCCCC---CceE----EEEEEEcCCCCCeEEecCCCCcccccccccccccccccccccccceEecCHHHHHHHHH
Confidence 9999754221 1111 11111110 0 00000 0111 1
Q ss_pred HHHHHHHHHHHHcCCCCCCcCEEEEccCCCccCCHHHHHHHHHHhccC-CCceeeecccccCccccchhHHHHHHHHHHH
Q 012221 334 GVSSCIESSLEDAGVSPEEVNYINAHATSTLAGDLAEINAIKKVFKNT-TGIKINATKSMIGHCLGAAGGLEAIATVKAI 412 (468)
Q Consensus 334 ~~~~~i~~al~~Agl~~~dId~v~~h~~gt~~~D~~E~~al~~~f~~~-~~~~v~s~k~~~Gh~~~AsG~~~l~~~~~~l 412 (468)
.+.++++++|+++|++++|||++..|..+....| .+.+.++-. +++. .. -..+||+.+|+=.+.|..+ +
T Consensus 281 ~~~~~i~~~L~~~gl~~~dId~~v~Hq~n~~~~~-----~~~~~Lgl~~ek~~-~~-l~~~GNt~sAsi~~~L~~~---~ 350 (379)
T PLN02326 281 CVPQVIESALQKAGLTAESIDWLLLHQANQRIID-----AVAQRLGIPPEKVI-SN-LANYGNTSAASIPLALDEA---V 350 (379)
T ss_pred HHHHHHHHHHHHcCCCHHHCCEEEECCCCHHHHH-----HHHHHcCCCHHHee-ec-HhhcCcHHHHHHHHHHHHH---H
Confidence 2335788999999999999999999987665432 344444431 1232 22 3578998887755555443 3
Q ss_pred hcCCcCCCCCCCCCCCCCCcccccccccccCccEEEEEcccccCeeeEEEEe
Q 012221 413 TTGWLHPSINQFNPEPSVEFDTVANKKQQHEVNVAISNSFGFGGHNSVVAFS 464 (468)
Q Consensus 413 ~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~g~gG~n~~~vl~ 464 (468)
+.+.+ .+-+.++..+||.|-+-.+++++
T Consensus 351 ~~g~~------------------------~~Gd~vll~~~G~G~t~~~~ll~ 378 (379)
T PLN02326 351 RSGKV------------------------KKGDVIATAGFGAGLTWGSAIVR 378 (379)
T ss_pred HcCCC------------------------CCCCEEEEEEEChhheeeEEEEE
Confidence 44322 12346677899998887777775
|
|
| >CHL00203 fabH 3-oxoacyl-acyl-carrier-protein synthase 3; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=8.5e-15 Score=144.35 Aligned_cols=287 Identities=17% Similarity=0.228 Sum_probs=175.2
Q ss_pred cEEEEeeceeccCC-CCHHHHHHHHHcCCCCccccCCCCCCCCCCccccccCCCCCCCCCCccccccCCHHHHHHHHHHH
Q 012221 57 RVVITGMGLVSVFG-NDVDAYYNKLLDGESGITMIDRFDASKFPTRFGGQIRGFSAEGYIDGKNDRRLDDCLRYCIVAGK 135 (468)
Q Consensus 57 ~V~ItG~g~~~p~g-~~~~~~~~~L~~G~~~i~~~~~~~~~~~~~~~~g~v~~~d~~~~i~~~~~~~~d~~~~l~l~a~~ 135 (468)
.|.|+|+|...|.- .+.+|+.+.+......|. ...++..+. +..+ -.....|+.+|++
T Consensus 2 ~v~I~~~g~~lP~~~v~~~e~~~~~~~~~~~i~-----~~~gi~~r~-----------~~~~-----~~~~~~la~~A~~ 60 (326)
T CHL00203 2 GVHILSTGSSVPNFSVENQQFEDIIETSDHWIS-----TRTGIKKRH-----------LAPS-----STSLTKLAAEAAN 60 (326)
T ss_pred ccEEEEEEEECCCeEEcHHHHHHhcCCChhhEe-----eccCeEEEE-----------eCCC-----CCCHHHHHHHHHH
Confidence 37899999999998 577777655421000000 001111110 0011 1135789999999
Q ss_pred HHHHHcCCCCccccccccccceEEEeecCCCccchHHHHHHHHHhCCCCcCCcCcchhhhhhhHHHHhhhhCCCC-ccee
Q 012221 136 KALEDADLGADISKKIDKERAGVLVGTGMGGLTVFSDGVQALIEKGHRKITPFFIPYAITNMGSALLAIDLGFMG-PNYS 214 (468)
Q Consensus 136 ~AL~dAgl~~~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~ia~~lgl~G-p~~~ 214 (468)
+||+++|+ ++++++ .|++|+...... .. .+..+...+|+++ +.+.
T Consensus 61 ~aL~~ag~---~~~dId----~vi~~s~~~~~~----------------------~~-----~~~~v~~~Lg~~~~~~~~ 106 (326)
T CHL00203 61 KALDKAHM---DPLEID----LIILATSTPDDL----------------------FG-----SASQLQAEIGATRAVAFD 106 (326)
T ss_pred HHHHHcCC---CHHHCC----EEEEEeCCCCCC----------------------Cc-----hHHHHHHHhCCCCCceee
Confidence 99999999 556666 566775422100 00 1345777788876 7789
Q ss_pred ecccChHHHHHHHHHHHHHHhCCCCEEEEEeeccccchhhhhHhhhccccccCCCCCCCCCCCCCCCCCCeeecceeEEE
Q 012221 215 ISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWDKDRDGFVMGEGAGVL 294 (468)
Q Consensus 215 v~~acas~l~Al~~A~~~I~~G~~d~~lvgG~e~~~~p~~~~~~~~~~~l~~~~~~~~~~~rpfd~~~~G~v~gEGaaav 294 (468)
|..+|+|++.||..|.++|++|.++.+||+|+|.+ +.. .+++.....+++||||+|+
T Consensus 107 v~~~Casg~~al~~A~~~i~sg~~~~~Lvv~~e~~-s~~----------------------~~~~~~~~~~~fgDga~A~ 163 (326)
T CHL00203 107 ITAACSGFILALVTATQFIQNGSYKNILVVGADTL-SKW----------------------IDWSDRKTCILFGDGAGAA 163 (326)
T ss_pred ecccchhHHHHHHHHHHHHHcCCCCEEEEEEehhh-hCc----------------------CCcccCCceEEEcceeeEE
Confidence 99999999999999999999999999999999972 111 0112223567999999999
Q ss_pred EecchhHHHhcCCceEEEEEEEEEcCCCCC-----C-------------CCCC-------CCh--------HHHHHHHHH
Q 012221 295 VMESLEHAMKRGAPIIAEYLGGAVNCDAYH-----M-------------TDPR-------ADG--------LGVSSCIES 341 (468)
Q Consensus 295 vL~~~~~A~~~g~~i~a~i~g~~~~~d~~~-----~-------------~~~~-------~~~--------~~~~~~i~~ 341 (468)
||++.+. ..+ .++....|+.. + ..|. ..+ .....++++
T Consensus 164 ll~~~~~-----~~~----~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~ 234 (326)
T CHL00203 164 IIGASYE-----NSI----LGFKLCTDGKLNSHLQLMNKPVNNQSFGTTKLPQGQYQSISMNGKEVYKFAVFQVPAVIIK 234 (326)
T ss_pred EEEEcCC-----CCe----EEEEEEEcCCCcceEEecCCCCCcccccccccccCCcceEEECCHHHHHHHHHHHHHHHHH
Confidence 9987432 111 11111111100 0 0010 011 124457999
Q ss_pred HHHHcCCCCCCcCEEEEccCCCccCCHHHHHHHHHHhccC-CCceeeecccccCccccchhHHHHHHHHHHHhcCCcCCC
Q 012221 342 SLEDAGVSPEEVNYINAHATSTLAGDLAEINAIKKVFKNT-TGIKINATKSMIGHCLGAAGGLEAIATVKAITTGWLHPS 420 (468)
Q Consensus 342 al~~Agl~~~dId~v~~h~~gt~~~D~~E~~al~~~f~~~-~~~~v~s~k~~~Gh~~~AsG~~~l~~~~~~l~~~~~pp~ 420 (468)
+|+++|++++|||++..|..+.... .++.+.++-. +++. ..-..+||+.+|+=.+.+..+ ++.+.+.
T Consensus 235 ~L~~~g~~~~did~~~~hq~~~~~~-----~~~~~~lgl~~~k~~--~~l~~~Gn~~sasi~~~L~~~---~~~g~~~-- 302 (326)
T CHL00203 235 CLNALNISIDEVDWFILHQANKRIL-----EAIANRLSVPNSKMI--TNLEKYGNTSAASIPLALDEA---IQNNKIQ-- 302 (326)
T ss_pred HHHHcCCCHHHCCEEEECCCCHHHH-----HHHHHHhCCCHHHhh--hHHHhhCcHHHHHHHHHHHHH---HHhCCCC--
Confidence 9999999999999999998876543 3344444431 2222 234578998877655544433 3454331
Q ss_pred CCCCCCCCCCCcccccccccccCccEEEEEcccccCeeeEEEEe
Q 012221 421 INQFNPEPSVEFDTVANKKQQHEVNVAISNSFGFGGHNSVVAFS 464 (468)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~g~gG~n~~~vl~ 464 (468)
+-..++..+||.|=+-.++|++
T Consensus 303 ----------------------~Gd~vll~~~G~G~s~~~~v~~ 324 (326)
T CHL00203 303 ----------------------PGQIIVLSGFGAGLTWGAIVLK 324 (326)
T ss_pred ----------------------CCCEEEEEEEchhhhheEEEEE
Confidence 1235566788887666666664
|
|
| >PRK06840 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.8e-14 Score=141.52 Aligned_cols=288 Identities=17% Similarity=0.169 Sum_probs=172.7
Q ss_pred cEEEEeeceeccCC-CCHHHHHHHHHcCCCCccccCCCCCCCCCCccccccCCCCCCCCCCccccccCCHHHHHHHHHHH
Q 012221 57 RVVITGMGLVSVFG-NDVDAYYNKLLDGESGITMIDRFDASKFPTRFGGQIRGFSAEGYIDGKNDRRLDDCLRYCIVAGK 135 (468)
Q Consensus 57 ~V~ItG~g~~~p~g-~~~~~~~~~L~~G~~~i~~~~~~~~~~~~~~~~g~v~~~d~~~~i~~~~~~~~d~~~~l~l~a~~ 135 (468)
.|.|+|+|...|.- .+.+++.+.+ |.+. ..+. ...++..+ . + ...-.....|+.+|++
T Consensus 4 ~v~I~~~~~~lP~~~v~~~~l~~~~--g~~~-~~~~--~~~Gi~~r-----------~-~----~~~~~~~~~la~~Aa~ 62 (339)
T PRK06840 4 NVGIVGTGVYLPKDVMTAEEIAEKT--GIPE-EVVI--EKFGIYEK-----------P-V----PGPEDHTSDMAIAAAK 62 (339)
T ss_pred ceEEEEEEEeCCCcccCHHHHHHHh--CCCH-HHHh--hhcCcceE-----------e-e----CCCCCCHHHHHHHHHH
Confidence 69999999999998 5667765432 1110 0000 00111100 0 1 1111235789999999
Q ss_pred HHHHHcCCCCccccccccccceEEEeec-CCCccchHHHHHHHHHhCCCCcCCcCcchhhhhhhHHHHhhhhCCCC-cce
Q 012221 136 KALEDADLGADISKKIDKERAGVLVGTG-MGGLTVFSDGVQALIEKGHRKITPFFIPYAITNMGSALLAIDLGFMG-PNY 213 (468)
Q Consensus 136 ~AL~dAgl~~~~~~~~~~~~~gv~~g~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~ia~~lgl~G-p~~ 213 (468)
+||+++|+ +++++| .+++.++ ..+. .....+.++...+|++. +.+
T Consensus 63 ~aL~~ag~---~~~dId----~li~~~~~~~~~--------------------------~~p~~a~~l~~~lGl~~~~~~ 109 (339)
T PRK06840 63 PALKQAGV---DPAAID----VVIYIGSEHKDY--------------------------PVWSSAPKIQHEIGAKNAWAF 109 (339)
T ss_pred HHHHHcCC---CHHHCC----EEEEeccCCCCC--------------------------CCCchHHHHHHHhCCCCcccc
Confidence 99999999 556665 4444332 1110 00112567888899976 788
Q ss_pred eecccChHHHHHHHHHHHHHHh-CCCCEEEEEeeccccchhhhhHhhhccccccCCCCCCCCCCCCCCCCCCe--eecce
Q 012221 214 SISTACATSNYCFYAAANHIRR-GEADLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWDKDRDGF--VMGEG 290 (468)
Q Consensus 214 ~v~~acas~l~Al~~A~~~I~~-G~~d~~lvgG~e~~~~p~~~~~~~~~~~l~~~~~~~~~~~rpfd~~~~G~--v~gEG 290 (468)
.|..+|++++.||..|.++|++ |.++.+||.+.|.. +.. .. |+.....+ .+|||
T Consensus 110 ~v~~~C~~~~~al~~A~~~l~~~g~~~~~Lvv~~~~~-s~~---------------------~~-~~~~~~~~~~~~GDg 166 (339)
T PRK06840 110 DIMAVCASFPIALKVAKDLLYSDPSIENVLLVGGYRN-SDL---------------------VD-YDNPRTRFMFNFAAG 166 (339)
T ss_pred cccccchHHHHHHHHHHHHHhcCCCccEEEEEeeccc-ccc---------------------cC-cCCCCeeeeccCCCc
Confidence 8999999999999999999999 99999999998851 110 00 11112232 36999
Q ss_pred eEEEEecchhHHHhcCCceEEEEEEEEEcCCCC------------C-CCCCC-------------CC----------hHH
Q 012221 291 AGVLVMESLEHAMKRGAPIIAEYLGGAVNCDAY------------H-MTDPR-------------AD----------GLG 334 (468)
Q Consensus 291 aaavvL~~~~~A~~~g~~i~a~i~g~~~~~d~~------------~-~~~~~-------------~~----------~~~ 334 (468)
|+|+||++.+. +..+ .+.....++. . ...+. +. ...
T Consensus 167 AaA~ll~~~~~----~~~i----l~~~~~t~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (339)
T PRK06840 167 GSAALLKKDAG----KNRI----LGSAIITDGSFSEDVRVPAGGTKQPASPETVENRQHYLDVIDPESMKERLDEVSIPN 238 (339)
T ss_pred eeEEEEEecCC----CCce----EEEEEEEcCCccceEEecCCCcCCCCcccccccccceEEEcCcHHHHHHhHhhHHHH
Confidence 99999987432 1222 2222221110 0 00000 00 012
Q ss_pred HHHHHHHHHHHcCCCCCCcCEEEEccCCCccCCHHHHHHHHHHhccC-CCceeeecccccCccccchhHHHHHHHHHHHh
Q 012221 335 VSSCIESSLEDAGVSPEEVNYINAHATSTLAGDLAEINAIKKVFKNT-TGIKINATKSMIGHCLGAAGGLEAIATVKAIT 413 (468)
Q Consensus 335 ~~~~i~~al~~Agl~~~dId~v~~h~~gt~~~D~~E~~al~~~f~~~-~~~~v~s~k~~~Gh~~~AsG~~~l~~~~~~l~ 413 (468)
..++++++|+++|++++|||++..|-.+... .+.+.+.++-. .+.. ....+||+.+|+=.+.+..+ ++
T Consensus 239 ~~~~i~~~L~~~gl~~~did~~~~h~~~~~~-----~~~~~~~Lgl~~~~~~---~~~~~Gn~~sas~~~~L~~~---~~ 307 (339)
T PRK06840 239 FLKVIREALRKSGYTPKDIDYLAILHMKRSA-----HIALLEGLGLTEEQAI---YLDEYGHLGQLDQILSLHLA---LE 307 (339)
T ss_pred HHHHHHHHHHHcCCCHHHCCEEEECCcCHHH-----HHHHHHHcCCCHHHeE---eHHhccchhhhhHHHHHHHH---HH
Confidence 4578999999999999999999887655433 23345554431 1222 24578998877766555433 34
Q ss_pred cCCcCCCCCCCCCCCCCCcccccccccccCccEEEEEcccccCeeeEEEEe
Q 012221 414 TGWLHPSINQFNPEPSVEFDTVANKKQQHEVNVAISNSFGFGGHNSVVAFS 464 (468)
Q Consensus 414 ~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~g~gG~n~~~vl~ 464 (468)
.+.+ .+-...+..+||.|.+-.+++++
T Consensus 308 ~~~~------------------------~~Gd~ill~~~G~G~s~~~~~l~ 334 (339)
T PRK06840 308 QGKL------------------------KDGDLVVLVSAGTGYTWAATVIR 334 (339)
T ss_pred cCCC------------------------CCCCEEEEEEEehhhheeEEEEE
Confidence 4322 11235666799999888888876
|
|
| >TIGR00748 HMG_CoA_syn_Arc hydroxymethylglutaryl-CoA synthase, putative | Back alignment and domain information |
|---|
Probab=99.62 E-value=8.6e-14 Score=137.87 Aligned_cols=285 Identities=16% Similarity=0.193 Sum_probs=171.7
Q ss_pred EEEEeeceeccCC-CCHHHHHHHHHcCCCCccccCCCCCCCCCCccccccCCCCCCCCCCccccccCCHHHHHHHHHHHH
Q 012221 58 VVITGMGLVSVFG-NDVDAYYNKLLDGESGITMIDRFDASKFPTRFGGQIRGFSAEGYIDGKNDRRLDDCLRYCIVAGKK 136 (468)
Q Consensus 58 V~ItG~g~~~p~g-~~~~~~~~~L~~G~~~i~~~~~~~~~~~~~~~~g~v~~~d~~~~i~~~~~~~~d~~~~l~l~a~~~ 136 (468)
|-|+|+|...|.. .+.+++.+.+ +.+ +.|-.... | .. .++....-.....|+++|+++
T Consensus 2 ~~I~g~g~~lP~~~v~n~~l~~~~--~~~-----~~~i~~~~-----G----i~-----~r~v~~~~~~~~~la~~Aa~~ 60 (345)
T TIGR00748 2 AGIVGYGAYIPMYRIKVEEIARVW--GKD-----PESISNGL-----P----VE-----EKAVPGLDEDTATIGVEAARN 60 (345)
T ss_pred ccEEEEEEeCCCeeecHHHHHHHh--CCC-----HhHeeecc-----c----ee-----eeecCCCCCCHHHHHHHHHHH
Confidence 4599999999996 6777776543 111 11100000 0 00 000000112357899999999
Q ss_pred HHHHcCCCCccccccccccceEEEeecCCCccchHHHHHHHHHhCCCCcCCcCcchhhhhhhHHHHhhhhCCCC--ccee
Q 012221 137 ALEDADLGADISKKIDKERAGVLVGTGMGGLTVFSDGVQALIEKGHRKITPFFIPYAITNMGSALLAIDLGFMG--PNYS 214 (468)
Q Consensus 137 AL~dAgl~~~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~ia~~lgl~G--p~~~ 214 (468)
||+++|+ +++++| .+++++..+... + ...+..+...+|++. +.+.
T Consensus 61 aL~~agl---~~~dID----~li~~s~~~~~~---------------------~-----p~~a~~v~~~LGl~~~~~~~d 107 (345)
T TIGR00748 61 ALKRAKI---DPKDIG----AVYVGSESHPYA---------------------V-----KPTATIVAEAIGATPDLTAAD 107 (345)
T ss_pred HHHHcCC---CHHHCC----EEEEEecCCCcc---------------------c-----cchHHHHHHHcCCCCCceEEE
Confidence 9999999 667777 566665422110 0 112456778899863 7888
Q ss_pred ecccChHHHHHHHHHHHHHHhCCCCEEEEEeeccccchhhhhHhhhccccccCCCCCCCCCCCCCCCCCCeeecceeEEE
Q 012221 215 ISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWDKDRDGFVMGEGAGVL 294 (468)
Q Consensus 215 v~~acas~l~Al~~A~~~I~~G~~d~~lvgG~e~~~~p~~~~~~~~~~~l~~~~~~~~~~~rpfd~~~~G~v~gEGaaav 294 (468)
|..+|+++..||..|..+|++|.++.+||.+.|... . . |.. ..-+..||||+|+
T Consensus 108 v~~aC~g~~~al~~A~~~i~sg~~~~vLVv~~d~~~-~-------------~----~~~--------~~~~~~GDGAaA~ 161 (345)
T TIGR00748 108 LEFACKAGTAGIQACMGLVASGMIKYGLAIGADTAQ-G-------------A----PGD--------ALEYTAGAGGAAY 161 (345)
T ss_pred HHHhHHHHHHHHHHHHHHHHcCCCCEEEEEEEeecc-c-------------C----CCc--------cCcccCCCceEEE
Confidence 999999999999999999999999999999999621 0 0 111 1114579999999
Q ss_pred EecchhHHHhcCCceEEEEEEEE-EcCCCCC---C-CC--C------CC---ChHHHHHHHHHHHHHcCCCCCCcCEEEE
Q 012221 295 VMESLEHAMKRGAPIIAEYLGGA-VNCDAYH---M-TD--P------RA---DGLGVSSCIESSLEDAGVSPEEVNYINA 358 (468)
Q Consensus 295 vL~~~~~A~~~g~~i~a~i~g~~-~~~d~~~---~-~~--~------~~---~~~~~~~~i~~al~~Agl~~~dId~v~~ 358 (468)
||++.+. ...+.+.. ...|... . .. + .. -......+++++|+++|++++|||++..
T Consensus 162 vl~~~~~--------~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~did~~i~ 233 (345)
T TIGR00748 162 IIGEKNT--------VAYFEGTYSYTTDTPDFWRREGEPYPRHGGRFTGEPAYFHHVVTAAKGLMEKLGLTPEDFDYAVF 233 (345)
T ss_pred EEccCCc--------ceEeecccceecccccccccCCCcCCCcCCeecChHHHHHHHHHHHHHHHHHcCCCHHHcCEEEe
Confidence 9986431 11222211 1111100 0 00 1 00 1122336788999999999999999999
Q ss_pred ccCCCccCCHHHHHHHHHHhccC-CCceeeecccccCccccchhHHHHHHHHHHHhcCCcCCCCCCCCCCCCCCcccccc
Q 012221 359 HATSTLAGDLAEINAIKKVFKNT-TGIKINATKSMIGHCLGAAGGLEAIATVKAITTGWLHPSINQFNPEPSVEFDTVAN 437 (468)
Q Consensus 359 h~~gt~~~D~~E~~al~~~f~~~-~~~~v~s~k~~~Gh~~~AsG~~~l~~~~~~l~~~~~pp~~~~~~~~~~~~~~~~~~ 437 (468)
|..+.... +.+.+.++-. +.+..+-.-..+||+.+||=.+.+...+..++
T Consensus 234 Hq~~~~~~-----~~~~~~lgl~~ek~~~~~~~~~~GNt~sAsipl~L~~~~~~~~------------------------ 284 (345)
T TIGR00748 234 HQPNGKFY-----LVAARMLGFPKEQVKPGLLTPRIGNTYSGATPVGLSAVLDIAE------------------------ 284 (345)
T ss_pred CCCChHHH-----HHHHHHcCCCHHHeeccccccccCchhhhHHHHHHHHHHHhcC------------------------
Confidence 97765432 2234444321 12222111256899888887766665542111
Q ss_pred cccccCccEEEEEcccccCeeeEEEEe
Q 012221 438 KKQQHEVNVAISNSFGFGGHNSVVAFS 464 (468)
Q Consensus 438 ~~~~~~~~~~l~~s~g~gG~n~~~vl~ 464 (468)
+-+.++..+||.|-+..+++++
T Consensus 285 -----~Gd~vll~~~G~G~s~~~~~~~ 306 (345)
T TIGR00748 285 -----PGDRILAVSYGSGAGSDAFSIV 306 (345)
T ss_pred -----CCCEEEEEEecCCcceeEEEEE
Confidence 1135666799998887787774
|
Thus, although there is no experimental evidence supporting this name, the bioinformatics-based conclusion appears to be sound. |
| >PRK05963 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed | Back alignment and domain information |
|---|
Probab=99.60 E-value=9.1e-14 Score=137.12 Aligned_cols=288 Identities=18% Similarity=0.212 Sum_probs=171.7
Q ss_pred cEEEEeeceeccCC-CCHHHHHHHHHcCCCCccccCCC--CCCCCCCccccccCCCCCCCCCCccccccCCHHHHHHHHH
Q 012221 57 RVVITGMGLVSVFG-NDVDAYYNKLLDGESGITMIDRF--DASKFPTRFGGQIRGFSAEGYIDGKNDRRLDDCLRYCIVA 133 (468)
Q Consensus 57 ~V~ItG~g~~~p~g-~~~~~~~~~L~~G~~~i~~~~~~--~~~~~~~~~~g~v~~~d~~~~i~~~~~~~~d~~~~l~l~a 133 (468)
.|.|+|+|...|.- .+.+++.+.+ |.+ +++ ...++..++ +..+ -.....|+..|
T Consensus 3 ~~~I~~~g~~lP~~~v~~~~~~~~~--~~~-----~~~i~~~~Gi~~r~-----------~~~~-----~e~~~~la~~A 59 (326)
T PRK05963 3 SSRIAGFGHAVPDRRVENAEIEAQL--GLE-----TGWIERRTGIRCRR-----------WAAP-----DETLSDLAASA 59 (326)
T ss_pred ccEEEEEEEECCCCeecHHHHHHHc--CCC-----HHHhhhccCCeEEE-----------EcCC-----CCCHHHHHHHH
Confidence 47899999999998 5677776543 111 111 001111110 1111 12357899999
Q ss_pred HHHHHHHcCCCCccccccccccceEEEeecCCCccchHHHHHHHHHhCCCCcCCcCcchhhhhhhHHHHhhhhCCCC-cc
Q 012221 134 GKKALEDADLGADISKKIDKERAGVLVGTGMGGLTVFSDGVQALIEKGHRKITPFFIPYAITNMGSALLAIDLGFMG-PN 212 (468)
Q Consensus 134 ~~~AL~dAgl~~~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~ia~~lgl~G-p~ 212 (468)
+++||+++|+ +++++| -+++++....+ .....+.+|...||++. ++
T Consensus 60 a~~aL~~ag~---~~~~Id----~li~~t~~~d~--------------------------~~p~~a~~v~~~Lg~~~~~~ 106 (326)
T PRK05963 60 GDMALSDAGI---ERSDIA----LTLLATSTPDH--------------------------LLPPSAPLLAHRLGLQNSGA 106 (326)
T ss_pred HHHHHHHcCC---CHHHCC----EEEEECCCCCC--------------------------CCCcHHHHHHHHhCCCCCce
Confidence 9999999999 566666 46666643211 11123667888999965 78
Q ss_pred eeecccChHHHHHHHHHHHHHHhCCCCEEEEEeeccccchhhhhHhhhccccccCCCCCCCCCCCCCCCCCCeeecceeE
Q 012221 213 YSISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWDKDRDGFVMGEGAG 292 (468)
Q Consensus 213 ~~v~~acas~l~Al~~A~~~I~~G~~d~~lvgG~e~~~~p~~~~~~~~~~~l~~~~~~~~~~~rpfd~~~~G~v~gEGaa 292 (468)
+.|..+|++++.||..|..+|+++. +.+||.++|.. +. .+ .+ +....++++||||+
T Consensus 107 ~di~~~C~g~~~aL~~A~~~l~~~~-~~aLVv~~d~~-s~----------~~-----------~~-~~~~~~~lfGDgA~ 162 (326)
T PRK05963 107 IDLAGACAGFLYALVLADGFVRAQG-KPVLVVAANIL-SR----------RI-----------NM-AERASAVLFADAAG 162 (326)
T ss_pred eeccchhhHHHHHHHHHHHHHHcCC-CeEEEEEechh-hc----------cC-----------Cc-cccCceEEEeecce
Confidence 8899999999999999999999985 88999999862 10 01 11 11234679999999
Q ss_pred EEEecchhHHHhcCCceEEEEEEEEEcCCCC--C--------CCCC--------C-----CCh--------HHHHHHHHH
Q 012221 293 VLVMESLEHAMKRGAPIIAEYLGGAVNCDAY--H--------MTDP--------R-----ADG--------LGVSSCIES 341 (468)
Q Consensus 293 avvL~~~~~A~~~g~~i~a~i~g~~~~~d~~--~--------~~~~--------~-----~~~--------~~~~~~i~~ 341 (468)
|+||++.+.. ...+. +.....++. . ...| . .++ ..+.+++++
T Consensus 163 A~ll~~~~~~---~~~~l----~~~~~t~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (326)
T PRK05963 163 AVVLAPSAKA---NSGVL----GSQLISDGSHYDLIKIPAGGSARPFAPERDASEFLMTMQDGRAVFTEAVRMMSGASQN 235 (326)
T ss_pred EEEEEecCCC---CCceE----EEEEEEcCCCCCeEEeCCCCcCCCCcccccccccceEecCCHHHHHHHHHHHHHHHHH
Confidence 9999864421 11111 111111110 0 0000 0 011 234567889
Q ss_pred HHHHcCCCCCCcCEEEEccCCCccCCHHHHHHHHHHhccCCCceeeecccccCccccchhHHHHHHHHHHHhcCCcCCCC
Q 012221 342 SLEDAGVSPEEVNYINAHATSTLAGDLAEINAIKKVFKNTTGIKINATKSMIGHCLGAAGGLEAIATVKAITTGWLHPSI 421 (468)
Q Consensus 342 al~~Agl~~~dId~v~~h~~gt~~~D~~E~~al~~~f~~~~~~~v~s~k~~~Gh~~~AsG~~~l~~~~~~l~~~~~pp~~ 421 (468)
+|+++|++++|||++..|-.+... .+.+.+.++-... .+...-..+||+.+|+=.+.+- ..++.+.+
T Consensus 236 ~L~~~gl~~~did~~~~h~~~~~~-----~~~~~~~l~l~~~-k~~~~l~~~Gn~~sas~~~~L~---~~~~~~~~---- 302 (326)
T PRK05963 236 VLASAAMTPQDIDRFFPHQANARI-----VDKVCETIGIPRA-KAASTLETYGNSSAATIPLSLS---LANLEQPL---- 302 (326)
T ss_pred HHHHcCCCHHHCCEEEeCCCCHHH-----HHHHHHHcCCCHH-HhhhhHHhhCcHHHHHHHHHHH---HHHHhCCC----
Confidence 999999999999999999776543 2233333332111 1112235779986665444332 22333322
Q ss_pred CCCCCCCCCCcccccccccccCccEEEEEcccccCeeeEEEEe
Q 012221 422 NQFNPEPSVEFDTVANKKQQHEVNVAISNSFGFGGHNSVVAFS 464 (468)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~g~gG~n~~~vl~ 464 (468)
.+-+.++.-+||.|-+-.++|++
T Consensus 303 --------------------~~Gd~vll~~~G~G~~~~~~ll~ 325 (326)
T PRK05963 303 --------------------REGERLLFAAAGAGMTGGAVVMR 325 (326)
T ss_pred --------------------CCCCEEEEEEEehhhhheeeEEe
Confidence 12245677799998887777775
|
|
| >PRK04262 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=1e-13 Score=137.67 Aligned_cols=286 Identities=19% Similarity=0.197 Sum_probs=173.5
Q ss_pred cEEEEeeceeccCC-CCHHHHHHHHHcCCCCccccCCCCCCCCCCccccccCCCCCCCCCCccccccCCHHHHHHHHHHH
Q 012221 57 RVVITGMGLVSVFG-NDVDAYYNKLLDGESGITMIDRFDASKFPTRFGGQIRGFSAEGYIDGKNDRRLDDCLRYCIVAGK 135 (468)
Q Consensus 57 ~V~ItG~g~~~p~g-~~~~~~~~~L~~G~~~i~~~~~~~~~~~~~~~~g~v~~~d~~~~i~~~~~~~~d~~~~l~l~a~~ 135 (468)
.|-|+|+|...|.- .+.+++.+.+. .+ ...+. +..+...+ .+.+ .-.....|+.+|++
T Consensus 2 ~v~I~~~g~ylP~~~v~~~el~~~~~--~~-~~~i~--~~~Gi~~R-----------~~~~-----~~~~~~~la~~Aa~ 60 (347)
T PRK04262 2 MVGIVGYGAYIPRYRIKVEEIARVWG--DD-PEAIK--RGLGVEEK-----------SVPG-----PDEDTATIAVEAAR 60 (347)
T ss_pred ceeEEEEEEeCCCEEecHHHHHHHhC--cC-HHHHh--hccCeeee-----------ecCC-----CCcCHHHHHHHHHH
Confidence 47899999999998 67777766541 11 00000 00111111 0011 11235789999999
Q ss_pred HHHHHcCCCCccccccccccceEEEeecCCCccchHHHHHHHHHhCCCCcCCcCcchhhhhhhHHHHhhhhCCCC--cce
Q 012221 136 KALEDADLGADISKKIDKERAGVLVGTGMGGLTVFSDGVQALIEKGHRKITPFFIPYAITNMGSALLAIDLGFMG--PNY 213 (468)
Q Consensus 136 ~AL~dAgl~~~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~ia~~lgl~G--p~~ 213 (468)
+||+++|+ +++++| .+++++..+... .+ ..+.++...+|++. +.+
T Consensus 61 ~aL~~ag~---~~~dId----~li~~s~~~~~~-------------------------~p-~~a~~v~~~Lgl~~~~~~~ 107 (347)
T PRK04262 61 NALKRAGI---DPKEIG----AVYVGSESHPYA-------------------------VK-PTATIVAEALGATPDLTAA 107 (347)
T ss_pred HHHHHcCC---CHHHCC----EEEEEecCCCcc-------------------------cc-cHHHHHHHHcCCCCCceEE
Confidence 99999999 666676 566665422110 01 11457778899964 678
Q ss_pred eecccChHHHHHHHHHHHHHHhCCCCEEEEEeeccccchhhhhHhhhccccccCCCCCCCCCCCCCCCCCCeeecceeEE
Q 012221 214 SISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWDKDRDGFVMGEGAGV 293 (468)
Q Consensus 214 ~v~~acas~l~Al~~A~~~I~~G~~d~~lvgG~e~~~~p~~~~~~~~~~~l~~~~~~~~~~~rpfd~~~~G~v~gEGaaa 293 (468)
.+..+|++++.+|+.|.++|++|.++.+||.+.|.... . |... + -+..||||+|
T Consensus 108 dv~~~C~~~~~aL~~A~~~i~sg~~~~aLVv~~e~~~~--------------~----~~~~---~-----~~~~GDGA~A 161 (347)
T PRK04262 108 DLEFACKAGTAALQAAMGLVKSGMIKYALAIGADTAQG--------------A----PGDA---L-----EYTAAAGGAA 161 (347)
T ss_pred EHHHhHHHHHHHHHHHHHHHHcCCCCEEEEEEEeeecc--------------C----CCCC---C-----CCcCCCCcEE
Confidence 89999999999999999999999999999999996100 0 1110 1 1245999999
Q ss_pred EEecchhHHHhcCCceEEEEEEEE-EcCCCCCC------CCCC----C-----ChHHHHHHHHHHHHHcCCCCCCcCEEE
Q 012221 294 LVMESLEHAMKRGAPIIAEYLGGA-VNCDAYHM------TDPR----A-----DGLGVSSCIESSLEDAGVSPEEVNYIN 357 (468)
Q Consensus 294 vvL~~~~~A~~~g~~i~a~i~g~~-~~~d~~~~------~~~~----~-----~~~~~~~~i~~al~~Agl~~~dId~v~ 357 (468)
+||++.+. ..+|.+.. ...|.... ..+. . .......+++++|+++|++++|||++.
T Consensus 162 ~ll~~~~~--------~~~i~~~~~~~~d~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~gl~~~dId~~v 233 (347)
T PRK04262 162 FIIGKEEV--------IAEIEATYSYTTDTPDFWRREGEPYPRHGGRFTGEPAYFKHIISAAKGLMEKLGLKPSDYDYAV 233 (347)
T ss_pred EEEecCcc--------cceeeccccccccchhhcCCCCCcCCCcCceecchHHHHHHHHHHHHHHHHHhCcCHHHhceee
Confidence 99986321 12233321 11111110 0010 0 113566789999999999999999999
Q ss_pred EccCCCccCCHHHHHHHHHHhcc-CCCceeeecccccCccccchhHHHHHHHHHHHhcCCcCCCCCCCCCCCCCCccccc
Q 012221 358 AHATSTLAGDLAEINAIKKVFKN-TTGIKINATKSMIGHCLGAAGGLEAIATVKAITTGWLHPSINQFNPEPSVEFDTVA 436 (468)
Q Consensus 358 ~h~~gt~~~D~~E~~al~~~f~~-~~~~~v~s~k~~~Gh~~~AsG~~~l~~~~~~l~~~~~pp~~~~~~~~~~~~~~~~~ 436 (468)
.|..+....+. +.+.++- ..++..+-.-..+||+.+|+=.+.+..++. . +.
T Consensus 234 ~Hq~n~~~~~~-----~~~~Lgl~~ek~~~~~~~~~~GNt~sAsi~~~L~~~~~----~-~~------------------ 285 (347)
T PRK04262 234 FHQPNGKFPLR-----VAKMLGFTKEQVKPGLLTPYIGNTYSGSALLGLAAVLD----V-AK------------------ 285 (347)
T ss_pred cCCCchHHHHH-----HHHHcCCCHHHhhccchhhhhCChHHHHHHHHHHHHHH----h-CC------------------
Confidence 99666654333 2333332 122222112467899988886666655432 1 10
Q ss_pred ccccccCccEEEEEcccccCeeeEEEEe
Q 012221 437 NKKQQHEVNVAISNSFGFGGHNSVVAFS 464 (468)
Q Consensus 437 ~~~~~~~~~~~l~~s~g~gG~n~~~vl~ 464 (468)
+...++..+||.|-+...++++
T Consensus 286 ------~Gd~vll~~~G~G~~~~~~~~~ 307 (347)
T PRK04262 286 ------PGDRILVVSFGSGAGSDAFSIT 307 (347)
T ss_pred ------CCCEEEEEecCCCcceeeEEEE
Confidence 1135666789988766666664
|
|
| >cd00827 init_cond_enzymes "initiating" condensing enzymes are a subclass of decarboxylating condensing enzymes, including beta-ketoacyl [ACP] synthase, type III and polyketide synthases, type III, which include chalcone synthase and related enzymes | Back alignment and domain information |
|---|
Probab=99.59 E-value=5.3e-14 Score=138.73 Aligned_cols=259 Identities=17% Similarity=0.140 Sum_probs=160.2
Q ss_pred EEEEeeceeccCC-CCHHHHHHHHHcCCCCccccCCCCCCCCCCccccccCCCCCCCCCCccccccCCHHHHHHHHHHHH
Q 012221 58 VVITGMGLVSVFG-NDVDAYYNKLLDGESGITMIDRFDASKFPTRFGGQIRGFSAEGYIDGKNDRRLDDCLRYCIVAGKK 136 (468)
Q Consensus 58 V~ItG~g~~~p~g-~~~~~~~~~L~~G~~~i~~~~~~~~~~~~~~~~g~v~~~d~~~~i~~~~~~~~d~~~~l~l~a~~~ 136 (468)
|.|+++|...|.- .+.+++.+.+. .. .+. ...+...+. +..+ -.....|+.+|+++
T Consensus 2 v~I~~i~~~lP~~~v~~~~~~~~~~--~~---~~~--~~~gi~~r~-----------~~~~-----~~~~~~l~~~a~~~ 58 (324)
T cd00827 2 VGIEAIGAYLPRYRVDNEELAEGLG--VD---PGK--YTTGIGQRH-----------MAGD-----DEDVPTMAVEAARR 58 (324)
T ss_pred ccEEEEEecCCceeecHHHHHHHhC--CC---cce--eeeecceeE-----------ecCC-----CCCHHHHHHHHHHH
Confidence 6799999999987 67777765532 11 000 000111110 0000 12357799999999
Q ss_pred HHHHcCCCCccccccccccceEEEeecCCCccchHHHHHHHHHhCCCCcCCcCcchhhhhhhHHHHhhhhCCC-Ccceee
Q 012221 137 ALEDADLGADISKKIDKERAGVLVGTGMGGLTVFSDGVQALIEKGHRKITPFFIPYAITNMGSALLAIDLGFM-GPNYSI 215 (468)
Q Consensus 137 AL~dAgl~~~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~ia~~lgl~-Gp~~~v 215 (468)
||+++|+ ++++++ .+++++...... ....+.+++..+|++ .+.+.|
T Consensus 59 aL~~ag~---~~~~Id----~li~~~~~~~~~--------------------------~~~~~~~i~~~lg~~~~~~~~v 105 (324)
T cd00827 59 ALERAGI---DPDDIG----LLIVATESPIDK--------------------------GKSAATYLAELLGLTNAEAFDL 105 (324)
T ss_pred HHHHcCC---CHHHCC----EEEEEcCCCCCC--------------------------CccHHHHHHHHcCCCCCceeeh
Confidence 9999999 666676 577776432110 112356788889984 588999
Q ss_pred cccChHHHHHHHHHHHHHHhCCCCEEEEEeeccccchhhhhHhhhccccccCCCCCCCCCCCCCCCCCCeeecceeEEEE
Q 012221 216 STACATSNYCFYAAANHIRRGEADLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWDKDRDGFVMGEGAGVLV 295 (468)
Q Consensus 216 ~~acas~l~Al~~A~~~I~~G~~d~~lvgG~e~~~~p~~~~~~~~~~~l~~~~~~~~~~~rpfd~~~~G~v~gEGaaavv 295 (468)
+.+|+|++.||..|+++|++|.++.+||+++|...... .+...+++++||||+|+|
T Consensus 106 ~~~C~s~~~al~~A~~~i~~g~~~~vlvv~~e~~~~~~------------------------~~~~~~~~~~gdgaaA~l 161 (324)
T cd00827 106 KQACYGGTAALQLAANLVESGPWRYALVVASDIASYLL------------------------DEGSALEPTLGDGAAAML 161 (324)
T ss_pred hhhhHHHHHHHHHHHHHHHcCCCCEEEEEEEHHhhhcc------------------------cCCCCccccccCceEEEE
Confidence 99999999999999999999999999999999732111 123457889999999999
Q ss_pred ecchhHHHhcCCceEEEEEEEEEcCCCCC---------CCC-------------CC--------CChHHHHHHHHHHHHH
Q 012221 296 MESLEHAMKRGAPIIAEYLGGAVNCDAYH---------MTD-------------PR--------ADGLGVSSCIESSLED 345 (468)
Q Consensus 296 L~~~~~A~~~g~~i~a~i~g~~~~~d~~~---------~~~-------------~~--------~~~~~~~~~i~~al~~ 345 (468)
|++.+.. .+..+ .+.....++.. ... .+ ........+++++|++
T Consensus 162 l~~~~~~--~~~~i----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 235 (324)
T cd00827 162 VSRNPGI--LAAGI----VSTHSTSDPGYDFSPYPVMDGGYPKPCKLAYAIRLTAEPAGRAVFEAAHKLIAKVVRKALDR 235 (324)
T ss_pred EecCccc--ccCCc----eeeeeecccccccCccceeccCCCcchhhhhhcceeecCCccchHHHHhHHHHHHHHHHHHH
Confidence 9986542 01122 22111111110 000 11 0123456688999999
Q ss_pred cCCCCCCcCEEEEccCCC-ccCCHHHHHHHHHHhcc-CCCceee--ecccccCccccchhHHHHHHH
Q 012221 346 AGVSPEEVNYINAHATST-LAGDLAEINAIKKVFKN-TTGIKIN--ATKSMIGHCLGAAGGLEAIAT 408 (468)
Q Consensus 346 Agl~~~dId~v~~h~~gt-~~~D~~E~~al~~~f~~-~~~~~v~--s~k~~~Gh~~~AsG~~~l~~~ 408 (468)
++++ +||+++..|..+. ...+.+ .+.++- ...+... .....+||+.+|+=.+.+..+
T Consensus 236 ~~~~-~~i~~~~~h~~~~~~~~~~~-----~~~l~~~~~~~~~~~~~~~~~~Gn~~sa~~~~~L~~~ 296 (324)
T cd00827 236 AGLS-EDIDYFVPHQPNGKKILEAV-----AKKLGGPPEKASQTRWILLRRVGNMYAASILLGLASL 296 (324)
T ss_pred cccc-cccceeeccCchHHHHHHHH-----HHHccchHhhhccchhhHHHHhCchHHHHHHHHHHHH
Confidence 9999 9999999998776 332222 222221 0112221 245667998877655555443
|
They are characterized by the utlization of CoA substrate primers, as well as the nature of their active site residues. |
| >COG0183 PaaJ Acetyl-CoA acetyltransferase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=99.58 E-value=4.4e-15 Score=148.87 Aligned_cols=53 Identities=36% Similarity=0.508 Sum_probs=48.1
Q ss_pred hHHHHhhhhCCCC--cceeecccChHHHHHHHHHHHHHHhCCCCEEEEEeecccc
Q 012221 198 GSALLAIDLGFMG--PNYSISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAI 250 (468)
Q Consensus 198 ~a~~ia~~lgl~G--p~~~v~~acas~l~Al~~A~~~I~~G~~d~~lvgG~e~~~ 250 (468)
++..++...|+.. |.++|+.+|+||+.|+..|++.|++|.+|++|+||+|++.
T Consensus 69 ~ar~~a~~aGl~~~~p~~~V~~~c~SG~~Av~~A~~~I~sG~~dvvlagG~E~mS 123 (392)
T COG0183 69 IARQAALAAGLPGSVPAVTVNRACASGLAAVRLAAQAIASGEADVVLAGGVEKMS 123 (392)
T ss_pred HHHHHHHHcCCCCCCCceEEeccchhHHHHHHHHHHHHHCCCCCEEEEEeeeecc
Confidence 3567788889885 9999999999999999999999999999999999999843
|
|
| >PLN03172 chalcone synthase family protein; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.2e-12 Score=129.26 Aligned_cols=331 Identities=14% Similarity=0.132 Sum_probs=189.1
Q ss_pred CcEEEEeeceeccCC-CCHHHHHHHHH---cC--CCCccc-cCC-CCCCCCCCccccc----cCCCCCCC------CCCc
Q 012221 56 KRVVITGMGLVSVFG-NDVDAYYNKLL---DG--ESGITM-IDR-FDASKFPTRFGGQ----IRGFSAEG------YIDG 117 (468)
Q Consensus 56 ~~V~ItG~g~~~p~g-~~~~~~~~~L~---~G--~~~i~~-~~~-~~~~~~~~~~~g~----v~~~d~~~------~i~~ 117 (468)
-+.+|.|+|...|.- ...+++.+.+. +- ...++. +.+ ++..+...|+... ++++ +++ .+..
T Consensus 15 ~~~~I~~igta~P~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~i~~~sgI~~R~~~~~~~~~~~~-~~~~~~~~p~~~~ 93 (393)
T PLN03172 15 GPATILAIGKATPANCVSQADYPDYYFRITNSEHMTELKEKFKRMCDKSMIKKRYMHLTEEILKEN-PNMCAYMAPSLDA 93 (393)
T ss_pred CCeEEEEEEecCCCccccHHHHHHHHHHHhcccCchHHHHHHHHHHHhcCCCceeEeccchhhhhC-ccccccCCCCHHH
Confidence 348899999999998 56666666554 21 111222 111 2334444444432 1111 111 1222
Q ss_pred cccccCCHHHHHHHHHHHHHHHHcCCCCccccccccccceEEEeecCCCccchHHHHHHHHHhCCCCcCCcCcchhhhhh
Q 012221 118 KNDRRLDDCLRYCIVAGKKALEDADLGADISKKIDKERAGVLVGTGMGGLTVFSDGVQALIEKGHRKITPFFIPYAITNM 197 (468)
Q Consensus 118 ~~~~~~d~~~~l~l~a~~~AL~dAgl~~~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ 197 (468)
+......-...|+.+|+++||+++|+ ++++++ -+++.++.+ +.+ ..
T Consensus 94 r~~~~~~~a~~La~~Aa~~aL~~ag~---~~~dId----~ii~~t~t~----------------------~~~-----P~ 139 (393)
T PLN03172 94 RQDMVVVEVPKLGKEAAAKAIKEWGQ---PKSKIT----HLVFCTTSG----------------------VDM-----PG 139 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCC---CHHHCC----EEEEEccCC----------------------CcC-----ch
Confidence 33333444568999999999999999 555665 455565422 111 12
Q ss_pred hHHHHhhhhCCCCc---ceeecccChHHHHHHHHHHHHHHhCCCCEEEEEeeccccchhhhhHhhhccccccCCCCCCCC
Q 012221 198 GSALLAIDLGFMGP---NYSISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTA 274 (468)
Q Consensus 198 ~a~~ia~~lgl~Gp---~~~v~~acas~l~Al~~A~~~I~~G~~d~~lvgG~e~~~~p~~~~~~~~~~~l~~~~~~~~~~ 274 (468)
.+.++...||++.- .+.+..+|++++.+|..|.++++++....+||.++|.+... +. . +++
T Consensus 140 ~a~~l~~~LGl~~~~~~~~~~~~gC~g~~~aL~~A~~~~~~~~~~~vLVV~~E~~S~~--~~--------~-----~~d- 203 (393)
T PLN03172 140 ADYQLTKLLGLKPSVKRFMMYQQGCFAGGTVLRLAKDLAENNAGSRVLVVCSEITAVT--FR--------G-----PSD- 203 (393)
T ss_pred HHHHHHHHhCCCCCceEEeeeCCchHHHHHHHHHHHHHHHcCCCCeEEEEEEehhhhh--hc--------c-----ccc-
Confidence 47788999999863 25678999999999999999999999999999999972210 00 0 000
Q ss_pred CCCCCCCCCCeeecceeEEEEecchhHHHhcCCceEEEEEEEEE----cCCCC---CCC-----------CCCCChHHHH
Q 012221 275 SRPWDKDRDGFVMGEGAGVLVMESLEHAMKRGAPIIAEYLGGAV----NCDAY---HMT-----------DPRADGLGVS 336 (468)
Q Consensus 275 ~rpfd~~~~G~v~gEGaaavvL~~~~~A~~~g~~i~a~i~g~~~----~~d~~---~~~-----------~~~~~~~~~~ 336 (468)
+-.+.--...++||||+|+||+..+... ..++.-+|.++.. ..++. .+. .|..-...+.
T Consensus 204 -~~~~~~v~~~LFGDGAaAvVl~~~~~~~--~~~~~~~i~~~~~~~~~~t~~~~~~~i~~~G~~~~l~~~vp~~~~~~i~ 280 (393)
T PLN03172 204 -THLDSLVGQALFGDGAAAVIIGADPDTK--IERPLFEIVSAAQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIE 280 (393)
T ss_pred -ccHHhhhccchhcCceEEEEEecCCCCc--ccCceeEEeeeccEEecCCcccccceEEcCCcEEEEechHHHHHHHHHH
Confidence 0000001346899999999998743211 0112223444421 11111 000 1111223556
Q ss_pred HHHHHHHHHcCCCCCCcCEEEEccCCCccCCHHHHHHHHHHhccC-CCcee-eecccccCccccchhHHHHHHHHHH-Hh
Q 012221 337 SCIESSLEDAGVSPEEVNYINAHATSTLAGDLAEINAIKKVFKNT-TGIKI-NATKSMIGHCLGAAGGLEAIATVKA-IT 413 (468)
Q Consensus 337 ~~i~~al~~Agl~~~dId~v~~h~~gt~~~D~~E~~al~~~f~~~-~~~~v-~s~k~~~Gh~~~AsG~~~l~~~~~~-l~ 413 (468)
..+++.|++.|++..||+++..|--|-+..| ++.+.++-. ..+.. ..+-..+|++.+|+=++-|-+.... ++
T Consensus 281 ~~~~~~L~~~gl~~~di~~~~~Hqgg~~Il~-----~v~~~Lgl~~~~~~~s~~vl~~yGNtSSaSv~~vL~~~~~~~~~ 355 (393)
T PLN03172 281 KSLVEAFAPIGINDWNSIFWIAHPGGPAILD-----QVEIKLDLKEEKLRATRHVLSDYGNMSSACVLFILDEMRKKSIE 355 (393)
T ss_pred HHHHHHhhhcCCCccccceEEecCCcHHHHH-----HHHHHcCCCHHHHHHHHHHHHHhCccHHhHHHHHHHHHHhhhhh
Confidence 6788999999999999999999977766544 444444431 11111 1234557887766543333322211 11
Q ss_pred cCCcCCCCCCCCCCCCCCcccccccccccCccEEEEEcccccCeeeEEEEeec
Q 012221 414 TGWLHPSINQFNPEPSVEFDTVANKKQQHEVNVAISNSFGFGGHNSVVAFSAF 466 (468)
Q Consensus 414 ~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~g~gG~n~~~vl~~~ 466 (468)
.+.+. .......++..+||-|=+-..++|+..
T Consensus 356 ~g~~~---------------------~G~~~~~~ll~afGpG~t~~~~ll~~~ 387 (393)
T PLN03172 356 EGKGS---------------------TGEGLEWGVLFGFGPGLTVETVVLHSV 387 (393)
T ss_pred cCCCC---------------------CCCCcceEEEEEeCCcceeeeeeeEec
Confidence 22110 001124667789999888888888864
|
|
| >PRK12880 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.9e-12 Score=127.18 Aligned_cols=293 Identities=15% Similarity=0.126 Sum_probs=171.8
Q ss_pred CcEEEEeeceeccCC-CCHHHHHHHHHcCCCCccccCC-CCCCCCCCccccccCCCCCCCCCCccccccCCHHHHHHHHH
Q 012221 56 KRVVITGMGLVSVFG-NDVDAYYNKLLDGESGITMIDR-FDASKFPTRFGGQIRGFSAEGYIDGKNDRRLDDCLRYCIVA 133 (468)
Q Consensus 56 ~~V~ItG~g~~~p~g-~~~~~~~~~L~~G~~~i~~~~~-~~~~~~~~~~~g~v~~~d~~~~i~~~~~~~~d~~~~l~l~a 133 (468)
+.+.|+|+|...|.- .+.+++++.+.. ..... ..+ ++..+...|+ +..+ -.....|+.+|
T Consensus 6 ~~~~I~~~g~~lP~~~v~~~~~~~~~~~-~~~~~-~~~i~~~~Gi~~R~-----------~~~~-----~e~~~~la~~A 67 (353)
T PRK12880 6 DKAKISGICVSVPEHKICIDDELESVFS-NDIKT-LKRMKKVIGLNTRY-----------ICDE-----NTCVSDLGKHA 67 (353)
T ss_pred cccEEEEEEEECCCeEecHHHHHHHhcC-cchhh-hhhhhhccCceEEE-----------eCCC-----CCCHHHHHHHH
Confidence 358899999999998 566666555431 11100 000 0111111111 0110 12367899999
Q ss_pred HHHHHHHcCCCCccccccccccceEEEeecCCCccchHHHHHHHHHhCCCCcCCcCcchhhhhhhHHHHhhhhCCCC--c
Q 012221 134 GKKALEDADLGADISKKIDKERAGVLVGTGMGGLTVFSDGVQALIEKGHRKITPFFIPYAITNMGSALLAIDLGFMG--P 211 (468)
Q Consensus 134 ~~~AL~dAgl~~~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~ia~~lgl~G--p 211 (468)
+++||+++|+ +++++| .+++++...+ ......+.++...||++. +
T Consensus 68 a~~aL~~a~~---~~~dId----~lI~~t~t~d--------------------------~~~P~~a~~v~~~Lg~~~~~~ 114 (353)
T PRK12880 68 ANTLLQGLNI---DKNSLD----ALIVVTQSPD--------------------------FFMPSTACYLHQLLNLSSKTI 114 (353)
T ss_pred HHHHHHHcCC---CHHHCC----EEEEEcCCCC--------------------------CCCCcHHHHHHHHhCCCCCce
Confidence 9999999999 556665 4666664322 122234788889999963 6
Q ss_pred ceeecccChHHHHHHHHHHHHHHhCCCCEEEEEeeccccchhhhhHhhhccccccCCCCCCCCCCCCCCCCCCeeeccee
Q 012221 212 NYSISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWDKDRDGFVMGEGA 291 (468)
Q Consensus 212 ~~~v~~acas~l~Al~~A~~~I~~G~~d~~lvgG~e~~~~p~~~~~~~~~~~l~~~~~~~~~~~rpfd~~~~G~v~gEGa 291 (468)
++.|..+|++++.+|..|..+|++|..+ +|+.++|.. +. .+ . ++......++||||
T Consensus 115 ~~di~~~C~g~~~aL~~A~~~i~~~~~~-~LVv~~e~~-S~----------~~-----------~-~~d~~~~~lFGDGA 170 (353)
T PRK12880 115 AFDLGQACAGYLYGLFVAHSLIQSGLGK-ILLICGDTL-SK----------FI-----------H-PKNMNLAPIFGDGV 170 (353)
T ss_pred EEehhhhhHHHHHHHHHHHHHHHcCCCC-EEEEEehhh-hc----------cC-----------C-cccCCceeeecccc
Confidence 7889999999999999999999999999 888888862 11 01 0 11112346899999
Q ss_pred EEEEecchhHHHhcCCceEEEEEEEEEcCC------C------CCCC----C--C---------CCChH--------HHH
Q 012221 292 GVLVMESLEHAMKRGAPIIAEYLGGAVNCD------A------YHMT----D--P---------RADGL--------GVS 336 (468)
Q Consensus 292 aavvL~~~~~A~~~g~~i~a~i~g~~~~~d------~------~~~~----~--~---------~~~~~--------~~~ 336 (468)
+|+||++.+.. .+ + ..+...+...+ + .+.. . + ..++. ...
T Consensus 171 aA~vl~~~~~~--~~--~-~~~~~~~~~~~~~~~p~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~ 245 (353)
T PRK12880 171 SATLIEKTDFN--EA--F-FELGSDGKYFDKLIIPKGAMRIPKADIFNDDSLMQTEEFRQLENLYMDGANIFNMALECEP 245 (353)
T ss_pred eEEEEEecCCC--Cc--e-EEEEecCCCCCeEEecCCCcCCCccccccccccccccccccCceEEEcCHHHHHHHHHHHH
Confidence 99999864321 11 1 11111111000 0 0000 0 0 01122 224
Q ss_pred HHHHHHHHHcCCCCCCcCEEEEccCCCccCCHHHHHHHHHHhccC-CCceeeecccccCccccchhHHHHHHHHHHHhcC
Q 012221 337 SCIESSLEDAGVSPEEVNYINAHATSTLAGDLAEINAIKKVFKNT-TGIKINATKSMIGHCLGAAGGLEAIATVKAITTG 415 (468)
Q Consensus 337 ~~i~~al~~Agl~~~dId~v~~h~~gt~~~D~~E~~al~~~f~~~-~~~~v~s~k~~~Gh~~~AsG~~~l~~~~~~l~~~ 415 (468)
.+++++|+++|++++|||++..|..+-.. ++.+.+.++-. .+++ ..+-..+|++.+||=...+-.. ++.+
T Consensus 246 ~~i~~~L~~~gl~~~did~~v~HQ~~~~i-----~~~i~~~Lgl~~ek~~-~~~l~~~GNtssasip~~L~~~---~~~~ 316 (353)
T PRK12880 246 KSFKEILEFSKVDEKDIAFHLFHQSNAYL-----VDCIKEELKLNDDKVP-NFIMEKYANLSACSLPALLCEL---DTPK 316 (353)
T ss_pred HHHHHHHHHcCCCHHHCCEEEECCCCHHH-----HHHHHHHhCCCHHHhh-hhhHHhhCCHHHHHHHHHHHHH---HHcC
Confidence 57899999999999999999999766544 44555555431 1221 1223457887666544333322 2222
Q ss_pred CcCCCCCCCCCCCCCCcccccccccccCccEEEEEcccccCeeeEEEEee
Q 012221 416 WLHPSINQFNPEPSVEFDTVANKKQQHEVNVAISNSFGFGGHNSVVAFSA 465 (468)
Q Consensus 416 ~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~g~gG~n~~~vl~~ 465 (468)
. .+ ++..+||.|=+-.+++++-
T Consensus 317 ~---------------------------~~-~ll~~~G~G~s~g~~ll~~ 338 (353)
T PRK12880 317 E---------------------------FK-ASLSAFGAGLSWGSAVLNF 338 (353)
T ss_pred C---------------------------cE-EEEEEEchhhhheEeEEEE
Confidence 1 11 4567888887777777653
|
|
| >cd00831 CHS_like Chalcone and stilbene synthases; plant-specific polyketide synthases (PKS) and related enzymes, also called type III PKSs | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.4e-12 Score=128.79 Aligned_cols=316 Identities=16% Similarity=0.169 Sum_probs=183.0
Q ss_pred EEEEeeceeccCC-CCHHHHHHHHHcCCCC------ccccCC-CCCCCCCCccccc---cCCCCCC----CCCCcccccc
Q 012221 58 VVITGMGLVSVFG-NDVDAYYNKLLDGESG------ITMIDR-FDASKFPTRFGGQ---IRGFSAE----GYIDGKNDRR 122 (468)
Q Consensus 58 V~ItG~g~~~p~g-~~~~~~~~~L~~G~~~------i~~~~~-~~~~~~~~~~~g~---v~~~d~~----~~i~~~~~~~ 122 (468)
++|+|+|...|.- .+.+++++.+....+. ...+.+ ++..+...|+... -+.+.+. ..+..+....
T Consensus 2 ~~I~~~~~~~P~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gI~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (361)
T cd00831 2 ATILAIGTAVPPHRVPQSELVDFYRRLFSSDHLPELKEKLKRLCAKTGIETRYLVLPGGEETYAPRPEMSPSLDERNDIA 81 (361)
T ss_pred cEEEEEEEeCCCCcCCHHHhhHHHHhcCChhhhHHHHHHHHHHHhhcceeEEEEEecCchhhcCCccccCCCcCcchhhH
Confidence 6799999999998 6777887776532211 000000 0111222221110 0000100 0122333334
Q ss_pred CCHHHHHHHHHHHHHHHHcCCCCccccccccccceEEEeecCCCccchHHHHHHHHHhCCCCcCCcCcchhhhhhhHHHH
Q 012221 123 LDDCLRYCIVAGKKALEDADLGADISKKIDKERAGVLVGTGMGGLTVFSDGVQALIEKGHRKITPFFIPYAITNMGSALL 202 (468)
Q Consensus 123 ~d~~~~l~l~a~~~AL~dAgl~~~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~i 202 (468)
......|+.+|+++||+++|+ ++++++ .++++++.+ + .....+.+|
T Consensus 82 ~~~~~~la~~Aa~~aL~~a~~---~~~~Id----~li~~s~~~-~--------------------------~~P~~a~~i 127 (361)
T cd00831 82 LEEARELAEEAARGALDEAGL---RPSDID----HLVVNTSTG-N--------------------------PTPSLDAML 127 (361)
T ss_pred HHHHHHHHHHHHHHHHHHhCC---CHHHCC----EEEEECCCC-C--------------------------CCCCHHHHH
Confidence 445778999999999999999 555665 456665421 1 112236688
Q ss_pred hhhhCCCC--cceeec-ccChHHHHHHHHHHHHHHhCCCCEEEEEeeccccchhhhhHhhhccccccCCCCCCCCCCCCC
Q 012221 203 AIDLGFMG--PNYSIS-TACATSNYCFYAAANHIRRGEADLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWD 279 (468)
Q Consensus 203 a~~lgl~G--p~~~v~-~acas~l~Al~~A~~~I~~G~~d~~lvgG~e~~~~p~~~~~~~~~~~l~~~~~~~~~~~rpfd 279 (468)
...+|++. +.+.|. .+|++++.||..|..+|++|..+.+||.++|.... . + ++-|
T Consensus 128 ~~~lgl~~~~~~~dv~~~~C~~~~~al~~A~~~~~~~~~~~aLvv~~e~~s~-~-~--------------------~~~d 185 (361)
T cd00831 128 INRLGLRPDVKRYNLGGMGCSAGAIALDLAKDLLEANPGARVLVVSTELCSL-W-Y--------------------RGPD 185 (361)
T ss_pred HHHhCCCcccchhccccccchhHHHHHHHHHHHHHHCCCCEEEEEEeecccc-e-e--------------------CCCC
Confidence 88899974 677898 89999999999999999999999999999996221 0 0 0001
Q ss_pred -CC--CCCeeecceeEEEEecchhHHHhcCCceEEEEEEEEEc--------------CCCCCCCC----CCCChHHHHHH
Q 012221 280 -KD--RDGFVMGEGAGVLVMESLEHAMKRGAPIIAEYLGGAVN--------------CDAYHMTD----PRADGLGVSSC 338 (468)
Q Consensus 280 -~~--~~G~v~gEGaaavvL~~~~~A~~~g~~i~a~i~g~~~~--------------~d~~~~~~----~~~~~~~~~~~ 338 (468)
.+ -..+++||||+|+||++.+..... ......+.+.... ..+.+... +........++
T Consensus 186 ~~~~~~~~~lfGDgaaA~ll~~~~~~~~~-~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 264 (361)
T cd00831 186 HRSMLVGNALFGDGAAAVLLSNDPRDRRR-ERPLFELVRAASTLLPDSEDAMGWHLGEEGLTFVLSRDVPRLVEKNLERV 264 (361)
T ss_pred cHHHhhhhhhccCCceEEEEEcCCCcccc-cccceeeecccceeeecCCCceEEEEEcceEEEEeChhHHHHHHHHHHHH
Confidence 00 135689999999999976532100 0111222222111 00111000 00112345667
Q ss_pred HHHHHHHc--CCCCCCcCEEEEccCCCccCCHHHHHHHHHHhccC-CCcee-eecccccCccccchhHHHHHHHHHHHhc
Q 012221 339 IESSLEDA--GVSPEEVNYINAHATSTLAGDLAEINAIKKVFKNT-TGIKI-NATKSMIGHCLGAAGGLEAIATVKAITT 414 (468)
Q Consensus 339 i~~al~~A--gl~~~dId~v~~h~~gt~~~D~~E~~al~~~f~~~-~~~~v-~s~k~~~Gh~~~AsG~~~l~~~~~~l~~ 414 (468)
++++|+++ |++++|||++..|..+....| .+.+.++-. +++.. ..+-..+||+.+|+=.+.+..+ +++
T Consensus 265 i~~~L~~~~~g~~~~did~~~~H~~~~~i~~-----~v~~~lgl~~~~~~~s~~~l~~~GN~~sasi~~~L~~~---~~~ 336 (361)
T cd00831 265 LRKLLARLGIGLFKLAFDHWCVHPGGRAVLD-----AVEKALGLSPEDLEASRMVLRRYGNMSSSSVLYVLAYM---EAK 336 (361)
T ss_pred HHHHhccccCCCccccceEEEECCCChHHHH-----HHHHHcCCCHHHHHHHHHHHHHhCCchhccHHHHHHHH---HHh
Confidence 99999999 999999999999988765433 344444431 11111 1344578998888765555544 344
Q ss_pred CCcCCCCCCCCCCCCCCcccccccccccCccEEEEEcccccCeeeEEE
Q 012221 415 GWLHPSINQFNPEPSVEFDTVANKKQQHEVNVAISNSFGFGGHNSVVA 462 (468)
Q Consensus 415 ~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~g~gG~n~~~v 462 (468)
+.+. +-+.++..+||.|-+-.+++
T Consensus 337 g~~~------------------------~Gd~vll~~~G~G~s~~~~l 360 (361)
T cd00831 337 GRVK------------------------RGDRGLLIAFGPGFTCESAV 360 (361)
T ss_pred CCCC------------------------CCCEEEEEEEcCCceeeeee
Confidence 4321 12356667888876655554
|
PKS generate an array of different products, dependent on the nature of the starter molecule. They share a common chemical strategy, after the starter molecule is loaded onto the active site cysteine, a carboxylative condensation reation extends the polyketide chain. Plant-specific PKS are dimeric iterative PKSs, using coenzyme A esters to deliver substrate to the active site, but they differ in the choice of starter molecule and the number of condensation reactions. |
| >PLN03170 chalcone synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.7e-12 Score=130.45 Aligned_cols=332 Identities=13% Similarity=0.108 Sum_probs=188.4
Q ss_pred CcEEEEeeceeccCC-CCHHHHHHHHHcC-----CCCccc-cCC-CCCCCCCCccccccCC---CCCCC------CCCcc
Q 012221 56 KRVVITGMGLVSVFG-NDVDAYYNKLLDG-----ESGITM-IDR-FDASKFPTRFGGQIRG---FSAEG------YIDGK 118 (468)
Q Consensus 56 ~~V~ItG~g~~~p~g-~~~~~~~~~L~~G-----~~~i~~-~~~-~~~~~~~~~~~g~v~~---~d~~~------~i~~~ 118 (468)
-+..|.|+|...|.- ...+++++.+..- ....+. +.+ |+..+...|+....++ .++++ .+..+
T Consensus 19 ~~~~i~~i~ta~P~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~i~~~sgI~~R~~~~~~~~~~~~~~~~~~~~p~~~~r 98 (401)
T PLN03170 19 GPATVLAIGTATPANCVHQADYPDYYFRITKSEHMTELKEKFKRMCDKSQIRKRYMHLTEEYLAENPNMCAYMAPSLDAR 98 (401)
T ss_pred CCeEEEEEeecCCCccccHHHHHHHHHHHccccCchhHHHHHHHHHHhCCCCceeEeccccchhhCccccccCCCCHHHH
Confidence 347799999999998 4555566655431 111221 111 2344554444433111 11111 12222
Q ss_pred ccccCCHHHHHHHHHHHHHHHHcCCCCccccccccccceEEEeecCCCccchHHHHHHHHHhCCCCcCCcCcchhhhhhh
Q 012221 119 NDRRLDDCLRYCIVAGKKALEDADLGADISKKIDKERAGVLVGTGMGGLTVFSDGVQALIEKGHRKITPFFIPYAITNMG 198 (468)
Q Consensus 119 ~~~~~d~~~~l~l~a~~~AL~dAgl~~~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~ 198 (468)
.....+-...|+.+|+++||+++|+ ++++++ -+++.++.+ +. ....
T Consensus 99 ~~~~~~~a~~La~~Aa~~AL~~ag~---~~~dId----~lI~~T~Tg----------------------~~-----~Ps~ 144 (401)
T PLN03170 99 QDIVVVEVPKLGKAAAQKAIKEWGQ---PKSKIT----HLVFCTTSG----------------------VD-----MPGA 144 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCC---CHHHCC----EEEEEccCC----------------------CC-----CChH
Confidence 3333344457999999999999999 555665 455555422 11 1124
Q ss_pred HHHHhhhhCCCCc---ceeecccChHHHHHHHHHHHHHHhCCCCEEEEEeeccccchhhhhHhhhccccccCCCCCCCCC
Q 012221 199 SALLAIDLGFMGP---NYSISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTAS 275 (468)
Q Consensus 199 a~~ia~~lgl~Gp---~~~v~~acas~l~Al~~A~~~I~~G~~d~~lvgG~e~~~~p~~~~~~~~~~~l~~~~~~~~~~~ 275 (468)
+.+|...||++.- .+.+..+|++++.+|..|.++++++....|||.++|.+. ..+. . +.. .
T Consensus 145 a~~l~~~LGl~~~~~r~~d~~~gC~G~~~aL~~A~~l~~~~~~~~vLVV~~E~~S--~~~~---------~----~~~-~ 208 (401)
T PLN03170 145 DYQLTKMLGLRPSVNRLMMYQQGCFAGGTVLRVAKDLAENNRGARVLVVCSEITA--VTFR---------G----PSE-S 208 (401)
T ss_pred HHHHHHHhCcCcccHHHHhhcChhHHHHHHHHHHHHHHHcCCCCeEEEEEEehhh--hccC---------C----ccc-c
Confidence 7788999999764 578999999999999999999999999999999999722 1100 0 000 0
Q ss_pred CCCCCCCCCeeecceeEEEEecchhHHHhcCCceEEEEEEEEEc--------------CCCCCCC----CCCCChHHHHH
Q 012221 276 RPWDKDRDGFVMGEGAGVLVMESLEHAMKRGAPIIAEYLGGAVN--------------CDAYHMT----DPRADGLGVSS 337 (468)
Q Consensus 276 rpfd~~~~G~v~gEGaaavvL~~~~~A~~~g~~i~a~i~g~~~~--------------~d~~~~~----~~~~~~~~~~~ 337 (468)
+ ++......++||||+|+||+..+... ......++...... .+|..+. .|..-...+..
T Consensus 209 ~-~~~~~~~~LFGDGAaAvVl~~~~~~~--~~~~~~~l~~~~~~~~p~~~~~~~~~i~~~G~~~~l~~~vp~~~~~~i~~ 285 (401)
T PLN03170 209 H-LDSMVGQALFGDGAAAVIVGADPDER--VERPLFQLVSASQTILPDSEGAIDGHLREVGLTFHLLKDVPGLISKNIER 285 (401)
T ss_pred h-hhhhhhhhhhhceeEEEEEecCCccc--ccCCceEEeeccceEecCCcccccceEEcCCeEEEEehHHHHHHHHHHHH
Confidence 0 11112345899999999998743210 01111233322110 0111000 01112234556
Q ss_pred HHHHHHHHcCCCCCCcCEEEEccCCCccCCHHHHHHHHHHhccC-CCce-eeecccccCccccchhHHHHHHHHHH-Hhc
Q 012221 338 CIESSLEDAGVSPEEVNYINAHATSTLAGDLAEINAIKKVFKNT-TGIK-INATKSMIGHCLGAAGGLEAIATVKA-ITT 414 (468)
Q Consensus 338 ~i~~al~~Agl~~~dId~v~~h~~gt~~~D~~E~~al~~~f~~~-~~~~-v~s~k~~~Gh~~~AsG~~~l~~~~~~-l~~ 414 (468)
.++++|+++|++++||+++..|--+.... +++.+.++-. +++. ....-..+||+.+|+=++-|-+.... ++.
T Consensus 286 ~v~~~L~~~gl~~~di~~~v~Hqgg~~il-----~~v~~~Lgl~~~~~~~s~~~l~~~GNtsSasv~~vL~~~~~~~~~~ 360 (401)
T PLN03170 286 SLEEAFKPLGITDYNSIFWVAHPGGPAIL-----DQVEAKVGLEKERMRATRHVLSEYGNMSSACVLFILDEMRKRSAED 360 (401)
T ss_pred HHHHHHHhcCCCccccCeEEecCCcHHHH-----HHHHHHcCCChHHHHHHHHHHHHhCccHHhHHHHHHHHHHHhHhhc
Confidence 88999999999999999999997766543 3444444431 1111 11334567998777654444443321 123
Q ss_pred CCcCCCCCCCCCCCCCCcccccccccccCccEEEEEcccccCeeeEEEEeec
Q 012221 415 GWLHPSINQFNPEPSVEFDTVANKKQQHEVNVAISNSFGFGGHNSVVAFSAF 466 (468)
Q Consensus 415 ~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~g~gG~n~~~vl~~~ 466 (468)
+.+. .....+.++..+||-|=+-.+++|+..
T Consensus 361 g~~~---------------------~G~~~~~~ll~afGpG~t~~~~ll~~~ 391 (401)
T PLN03170 361 GQAT---------------------TGEGFDWGVLFGFGPGLTVETVVLHSV 391 (401)
T ss_pred CCCC---------------------CCCCccEEEEEEeCchHhHHhHHheec
Confidence 3221 001114567778888767667777653
|
|
| >KOG1392 consensus Acetyl-CoA acetyltransferase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.2e-13 Score=123.99 Aligned_cols=149 Identities=19% Similarity=0.226 Sum_probs=108.9
Q ss_pred eecceeEEEEecchhHHHhcCCceEEEEEEEE-EcCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCcCEEEEccCCCc
Q 012221 286 VMGEGAGVLVMESLEHAMKRGAPIIAEYLGGA-VNCDAYHMTDPRADGLGVSSCIESSLEDAGVSPEEVNYINAHATSTL 364 (468)
Q Consensus 286 v~gEGaaavvL~~~~~A~~~g~~i~a~i~g~~-~~~d~~~~~~~~~~~~~~~~~i~~al~~Agl~~~dId~v~~h~~gt~ 364 (468)
.+.||+.+.++..+|.|++.|.++-+.++.+- +++|......- +...++-+.|++||++..|||.+|.|....-
T Consensus 301 fltdgasa~limteekala~gykpkaylrdflyvsqdpkdqlll-----gpay~ipkll~kagltlkdid~feiheafag 375 (465)
T KOG1392|consen 301 FLTDGASAALIMTEEKALANGYKPKAYLRDFLYVSQDPKDQLLL-----GPAYVIPKLLDKAGLTLKDIDVFEIHEAFAG 375 (465)
T ss_pred hhcCcchhhhhhhHHHHHHcCCCchHHhhhheeeccCchhheec-----ccccccHHHHHHcCCcccccchhhhHHHHhH
Confidence 37899999999999999999999999998874 45554432221 2256789999999999999999999965432
Q ss_pred cCCHHHHHHHHH-Hh-----------cc--CCCceeeecccccCccccchhHHHHHHHHHHHhcCCcCCCCCCCCCCCCC
Q 012221 365 AGDLAEINAIKK-VF-----------KN--TTGIKINATKSMIGHCLGAAGGLEAIATVKAITTGWLHPSINQFNPEPSV 430 (468)
Q Consensus 365 ~~D~~E~~al~~-~f-----------~~--~~~~~v~s~k~~~Gh~~~AsG~~~l~~~~~~l~~~~~pp~~~~~~~~~~~ 430 (468)
.- ....+|+.. .| +. .+.++..++.-.+||++||.|+.-......-|+..
T Consensus 376 qi-lanlkamdsdwfck~ymgr~~kvg~ppl~k~nnwggslsighpfgatgvrl~mh~anrl~~e--------------- 439 (465)
T KOG1392|consen 376 QI-LANLKAMDSDWFCKEYMGRSGKVGRPPLDKLNNWGGSLSIGHPFGATGVRLAMHSANRLKEE--------------- 439 (465)
T ss_pred HH-HhhhhhhcchHHHHHHhcccCccCCCChHHhcccCcceecCCcccccchhhHHHHHhHHHhh---------------
Confidence 10 012222222 11 11 23466778888899999999998887777666542
Q ss_pred CcccccccccccCccEEEEEcccccCeeeEEEEeecC
Q 012221 431 EFDTVANKKQQHEVNVAISNSFGFGGHNSVVAFSAFK 467 (468)
Q Consensus 431 ~~~~~~~~~~~~~~~~~l~~s~g~gG~n~~~vl~~~~ 467 (468)
.-+++++.+...||+...++++.|+
T Consensus 440 ------------~gqygvvaacaaggqgvamlieayp 464 (465)
T KOG1392|consen 440 ------------KGQYGVVAACAAGGQGVAMLIEAYP 464 (465)
T ss_pred ------------cCceeEeehhhcCCcceEEEeeccC
Confidence 2357888888999999999999986
|
|
| >PLN03169 chalcone synthase family protein; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=5.6e-12 Score=126.67 Aligned_cols=291 Identities=12% Similarity=0.131 Sum_probs=161.3
Q ss_pred CCcEEEEeeceeccCC-CCHHHHHHHHHcCCC----Cccc-cCC-CCCCCCCCccccc----cCCCCC--CCC---CCcc
Q 012221 55 KKRVVITGMGLVSVFG-NDVDAYYNKLLDGES----GITM-IDR-FDASKFPTRFGGQ----IRGFSA--EGY---IDGK 118 (468)
Q Consensus 55 ~~~V~ItG~g~~~p~g-~~~~~~~~~L~~G~~----~i~~-~~~-~~~~~~~~~~~g~----v~~~d~--~~~---i~~~ 118 (468)
..++.|+|+|...|.- .+.+++.+.+..-.. .++. +.+ +...+...|+... .+++.. ... +..+
T Consensus 19 ~~~~~I~gigt~~P~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~tGI~~R~~~~~~~~~~~~~~~~~~~~~~~~~r 98 (391)
T PLN03169 19 PGKATILALGKAFPSQLVPQEYLVDGYFRDTKCDDPALKEKLERLCKTTTVKTRYVVMSKEILDKYPELATEGTPTIKQR 98 (391)
T ss_pred CCCeEEEEEEeeCCCeecCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCcceeeEeccccchhhCccccccCCCCHHHH
Confidence 3468999999999998 577777775433211 0111 000 0112222222211 001100 000 1111
Q ss_pred ccccCCHHHHHHHHHHHHHHHHcCCCCccccccccccceEEEeecCCCccchHHHHHHHHHhCCCCcCCcCcchhhhhhh
Q 012221 119 NDRRLDDCLRYCIVAGKKALEDADLGADISKKIDKERAGVLVGTGMGGLTVFSDGVQALIEKGHRKITPFFIPYAITNMG 198 (468)
Q Consensus 119 ~~~~~d~~~~l~l~a~~~AL~dAgl~~~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~ 198 (468)
....-.....|+.+|+++||+++|+ +++++| .+++++.. ++ .....
T Consensus 99 ~~~~~e~~~~La~~Aa~~aL~~ag~---~~~dId----~lI~~t~t-~~--------------------------~~P~~ 144 (391)
T PLN03169 99 LDIANEAVTQMAVEASLACIKEWGR---PVSDIT----HLVYVSSS-EA--------------------------RLPGG 144 (391)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCC---CHHHCC----EEEEECcC-CC--------------------------CCCcH
Confidence 1111233567999999999999999 556665 45666531 11 11223
Q ss_pred HHHHhhhhCCCCc---ceeecccChHHHHHHHHHHHHHHhCCCCEEEEEeeccccchhhhhHhhhccccccCCCCCCCCC
Q 012221 199 SALLAIDLGFMGP---NYSISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTAS 275 (468)
Q Consensus 199 a~~ia~~lgl~Gp---~~~v~~acas~l~Al~~A~~~I~~G~~d~~lvgG~e~~~~p~~~~~~~~~~~l~~~~~~~~~~~ 275 (468)
+..+...||++.. .+.+..+|++++.||..|..+|++|....|||.++|.. +.. +. . +. ..
T Consensus 145 a~~l~~~LGl~~~~~~~~d~~~gC~g~~~aL~~A~~~~~~~~~~~vLvv~~e~~-s~~----~~------~----~~-~~ 208 (391)
T PLN03169 145 DLYLAKQLGLSPDVQRVMLYFLGCSGGVAGLRVAKDIAENNPGSRVLLTTSETT-ILG----FR------P----PS-PD 208 (391)
T ss_pred HHHHHHHhCcCCcceeeecccChhHHHHHHHHHHHHHHHhCCCCeEEEEEEEcC-hhh----cc------C----CC-cc
Confidence 6688888999753 47789999999999999999999999999999999972 110 00 0 00 00
Q ss_pred CCCCCCCCCeeecceeEEEEecchhHHHhcCCceEEEEEEEEE----cC----------CCCC----CCCCCCChHHHHH
Q 012221 276 RPWDKDRDGFVMGEGAGVLVMESLEHAMKRGAPIIAEYLGGAV----NC----------DAYH----MTDPRADGLGVSS 337 (468)
Q Consensus 276 rpfd~~~~G~v~gEGaaavvL~~~~~A~~~g~~i~a~i~g~~~----~~----------d~~~----~~~~~~~~~~~~~ 337 (468)
+ ++......++||||+|+||+..+... ....++ .+..... .. ++.. ...|......+..
T Consensus 209 ~-~~d~~~~~lFGDGAaA~vl~~~~~~~-~~~~~~-~l~~~~~~~ip~~~~~~~~~~~~~g~~~~~g~~v~~~~~~~~~~ 285 (391)
T PLN03169 209 R-PYDLVGAALFGDGAAAVIIGADPIPV-SESPFF-ELHTAIQQFLPGTEKTIDGRLTEEGINFKLGRELPQKIEDNIEG 285 (391)
T ss_pred c-hhhhhhhhhccCceEEEEEecCCCcc-cCCcce-EEEeeeeeEcCCCccccCceecCCceEEEECcHHHHHHHHHHHH
Confidence 1 12223356899999999998754321 011111 2221111 00 0000 0001111234556
Q ss_pred HHHHHHHHcCCCCCCcC--EEEEccCCCccCCHHHHHHHHHHhccC-CCceee-ecccccCccccchhHH
Q 012221 338 CIESSLEDAGVSPEEVN--YINAHATSTLAGDLAEINAIKKVFKNT-TGIKIN-ATKSMIGHCLGAAGGL 403 (468)
Q Consensus 338 ~i~~al~~Agl~~~dId--~v~~h~~gt~~~D~~E~~al~~~f~~~-~~~~v~-s~k~~~Gh~~~AsG~~ 403 (468)
+++++|+++|++++||| ++..|-.+... ++++.+.++-. +.+..+ ..-..+||+.+|+=.+
T Consensus 286 ~i~~~L~~~gl~~~did~~~~v~Hq~n~~i-----l~~v~~~Lgl~~ek~~~s~~~l~~~GNtsSasip~ 350 (391)
T PLN03169 286 FCKKLMKKAGLVEKDYNDLFWAVHPGGPAI-----LNRLEKKLKLAPEKLECSRRALMDYGNVSSNTIVY 350 (391)
T ss_pred HHHHHHHHcCCCCCCCCcceEEecCCCHHH-----HHHHHHHcCCCHHHHHHHHHHHHHhCCchHhHHHH
Confidence 78999999999999999 88899776544 33444444421 112211 2334678977666443
|
|
| >PLN03171 chalcone synthase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=7.5e-12 Score=125.99 Aligned_cols=292 Identities=15% Similarity=0.149 Sum_probs=158.4
Q ss_pred CcEEEEeeceeccCC-CCHHHHHHHHHcC--CCCccccC----C-CCCCCCCCccccc----cCCCCCCC------CCCc
Q 012221 56 KRVVITGMGLVSVFG-NDVDAYYNKLLDG--ESGITMID----R-FDASKFPTRFGGQ----IRGFSAEG------YIDG 117 (468)
Q Consensus 56 ~~V~ItG~g~~~p~g-~~~~~~~~~L~~G--~~~i~~~~----~-~~~~~~~~~~~g~----v~~~d~~~------~i~~ 117 (468)
.++.|+|+|...|.- .+.+++.+.+.+- .+...+.. + ++..+...|+... .+++ +.+ .+..
T Consensus 21 ~~~~I~gigt~~P~~~v~n~~~~~~~~~~~~~~~~~~~~~~~~~i~~~tGI~~R~~~~~~~~~~~~-~~~~~~~~~~~~~ 99 (399)
T PLN03171 21 GLAAVLAIGTANPANCVPQDEFPDFYFRATKSDHLTALKDKFKRICQELGVQKRYLHHTEELLSAH-PEFLDHDAPSLDA 99 (399)
T ss_pred CCcEEEEEEeeCCCcccCHHHHHHHHHHHhcccccHHHHHHHHHHHHhcCCCceeEeccccccccC-ccccccCCCCHHH
Confidence 348999999999998 5666666654321 11111000 0 1111222222111 0000 000 0122
Q ss_pred cccccCCHHHHHHHHHHHHHHHHcCCCCccccccccccceEEEeecCCCccchHHHHHHHHHhCCCCcCCcCcchhhhhh
Q 012221 118 KNDRRLDDCLRYCIVAGKKALEDADLGADISKKIDKERAGVLVGTGMGGLTVFSDGVQALIEKGHRKITPFFIPYAITNM 197 (468)
Q Consensus 118 ~~~~~~d~~~~l~l~a~~~AL~dAgl~~~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ 197 (468)
+.....+....|+++|+++||+++|+ +++++| -|+++++.+. .+| .
T Consensus 100 r~~~~~~~a~~la~~Aa~~aL~~ag~---~~~dId----~li~~t~t~~----------------------~~P-----~ 145 (399)
T PLN03171 100 RLDIAADAVPELAAEAAKKAIAEWGR---PAADIT----HLVVTTNSGA----------------------HIP-----G 145 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCC---CHHHCC----EEEEEcCCCC----------------------CCC-----c
Confidence 22233345678999999999999999 566666 4666654321 111 2
Q ss_pred hHHHHhhhhCCCCc---ceeecccChHHHHHHHHHHHHHHhCCCCEEEEEeeccccchhhhhHhhhccccccCCCCCCCC
Q 012221 198 GSALLAIDLGFMGP---NYSISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTA 274 (468)
Q Consensus 198 ~a~~ia~~lgl~Gp---~~~v~~acas~l~Al~~A~~~I~~G~~d~~lvgG~e~~~~p~~~~~~~~~~~l~~~~~~~~~~ 274 (468)
.+..+...||++.. .+.+..+|++++.+|..|..+|++|....|||.++|....-. . +.+.
T Consensus 146 ~a~~v~~~LGl~~~~~~~~~~~~gC~g~~~aL~~A~~li~~~~~~~vLVv~~e~~s~~~-----------~-----~~d~ 209 (399)
T PLN03171 146 VDFRLVPLLGLRPSVRRTMLHLNGCFAGAAALRLAKDLAENNRGARVLVVAAEITLLLF-----------N-----GPDE 209 (399)
T ss_pred hHHHHHHHhCCCcccceeeccCCccHHHHHHHHHHHHHHHhCCCCeEEEEEEecccccc-----------C-----CCCc
Confidence 36678888999753 355667999999999999999999999999999999721110 0 0000
Q ss_pred CCCCCCCCCCeeecceeEEEEecchhHHHhcCCceEEEEEEEEEcCCCC--------------CCC-CCCCChHHHHHHH
Q 012221 275 SRPWDKDRDGFVMGEGAGVLVMESLEHAMKRGAPIIAEYLGGAVNCDAY--------------HMT-DPRADGLGVSSCI 339 (468)
Q Consensus 275 ~rpfd~~~~G~v~gEGaaavvL~~~~~A~~~g~~i~a~i~g~~~~~d~~--------------~~~-~~~~~~~~~~~~i 339 (468)
. .++..-.+.++||||+|+||++.+...++ .+.+|.......++. ... ....-...+.+.+
T Consensus 210 ~-~~~~~v~~~LFGDGAaA~vl~~~~~~~~~---~~~~l~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~~~vp~~i~~~l 285 (399)
T PLN03171 210 G-CFQTLLNQGLFGDGAAAVIVGADADAAER---PLFEIVSAAQAIIPESDDAINMHFTEGGLDGNIGTRQVPGLIGDNI 285 (399)
T ss_pred c-cHHhhhccccccCccEEEEEecCCCCCCC---CceEEEEeeeEEecCCchheEEEEEcCCceEEECchhHHHHHHHHH
Confidence 0 01111136789999999999975432111 122333322211111 000 0000112233334
Q ss_pred HHHHHH---------cCCCCCCcCEEEEccCCCccCCHHHHHHHHHHhcc-CCCceee-ecccccCccccchhHHHHHHH
Q 012221 340 ESSLED---------AGVSPEEVNYINAHATSTLAGDLAEINAIKKVFKN-TTGIKIN-ATKSMIGHCLGAAGGLEAIAT 408 (468)
Q Consensus 340 ~~al~~---------Agl~~~dId~v~~h~~gt~~~D~~E~~al~~~f~~-~~~~~v~-s~k~~~Gh~~~AsG~~~l~~~ 408 (468)
++++++ +|++++||+++ .|-.+-.. ++.+.+.++- .++...+ .+-..+|++.+|+=.+.|-.+
T Consensus 286 ~~~l~~~l~~~~~~~~g~~~~di~~~-~Hq~~~~i-----l~~v~~~Lgl~~ek~~~s~~~l~~yGNtssaSip~~L~~~ 359 (399)
T PLN03171 286 ERCLLDAFAPLLGGDGGAEWNDLFWA-VHPGSSAI-----LDQVDAALGLEPEKLAASRRVLSDYGNMFGATVIFALDEL 359 (399)
T ss_pred HHHHHHHHHhhcccccCCCcccceEE-EcCCcHHH-----HHHHHHHcCCCHHHhHHHHHHHHHhCcchhhhHHHHHHHH
Confidence 555554 58889999998 69666543 3344454443 1122211 233567998876644444433
|
|
| >TIGR02845 spore_V_AD stage V sporulation protein AD | Back alignment and domain information |
|---|
Probab=99.39 E-value=3.9e-11 Score=113.89 Aligned_cols=179 Identities=22% Similarity=0.221 Sum_probs=119.6
Q ss_pred HHHHHHHHHHHHHHHcCCCCccccccccccceEEEeecCCCccchHHHHHHHHHhCCCCcCCcCcchhhhhhhHHHHhhh
Q 012221 126 CLRYCIVAGKKALEDADLGADISKKIDKERAGVLVGTGMGGLTVFSDGVQALIEKGHRKITPFFIPYAITNMGSALLAID 205 (468)
Q Consensus 126 ~~~l~l~a~~~AL~dAgl~~~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~ia~~ 205 (468)
...|+.+|+++||++||+ +++++| .+++|+.. + ....+..++..
T Consensus 50 e~eLa~eAa~~ALekAGL---~~~DID----~IIvGdl~---------------------------~--Q~~~As~vA~~ 93 (327)
T TIGR02845 50 ERKLMEDAVNLALKKANL---KKDDVD----FFLAGDLL---------------------------N--QIITANFVARD 93 (327)
T ss_pred HHHHHHHHHHHHHHHcCC---CHHHCC----EEEEeCCC---------------------------C--cccHHHHHHHH
Confidence 467999999999999999 666776 46666410 0 00135677778
Q ss_pred hCCCCcceeecccChHHHHHHHHHHHHHHhCCCCEEEEEeeccccchhhhhHhhhccccccCCCCCCCCCCCCCCCCCCe
Q 012221 206 LGFMGPNYSISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWDKDRDGF 285 (468)
Q Consensus 206 lgl~Gp~~~v~~acas~l~Al~~A~~~I~~G~~d~~lvgG~e~~~~p~~~~~~~~~~~l~~~~~~~~~~~rpfd~~~~G~ 285 (468)
||+ |.+.|.++|+|+..||..|..+|++|.+|.+||++.|...+..... +.... -+.. +.....
T Consensus 94 LGI--P~fdV~~ACSTf~~AL~lAa~lI~SG~ad~VLVV~Ssh~S~AErqf-----r~p~e-----yg~q----~~~ta~ 157 (327)
T TIGR02845 94 LGI--PFLGLYGACSTSMETLALGAMLVDGGFADRVLAATSSHYATAERQF-----RYPTE-----YGVQ----KPPTAQ 157 (327)
T ss_pred hCC--CEEEEeccCHHHHHHHHHHHHHHhCCCCCEEEEEEecccchhhhhc-----ccccc-----cccC----CCCeee
Confidence 886 8899999999999999999999999999999999998733221110 11100 0111 224456
Q ss_pred eecceeEEEEecchhHHHhcCCceE----EEEEEEEEcCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCcCEEEEccC
Q 012221 286 VMGEGAGVLVMESLEHAMKRGAPII----AEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAGVSPEEVNYINAHAT 361 (468)
Q Consensus 286 v~gEGaaavvL~~~~~A~~~g~~i~----a~i~g~~~~~d~~~~~~~~~~~~~~~~~i~~al~~Agl~~~dId~v~~h~~ 361 (468)
..++||+|+||++.+ .+.+|- ++|..++.. |...+. .....+....|.+=|++.|.+|+|-|.|..-+-
T Consensus 158 ~tgdGAGA~vl~~~~----~~~~i~~~t~gkv~d~g~~-d~~nmg--aamapaa~dti~~h~~d~~~~~~~yd~i~tgdl 230 (327)
T TIGR02845 158 WTVTGAGAVLLASTG----GGPRITSATIGKVVDYGIT-DPLDMG--AAMAPAAADTIEAHFKDTGRSVDDYDLIVTGDL 230 (327)
T ss_pred EEEcccEEEEEeecC----CCCceEEEEEEEEEecCCC-Ccccch--hhhhHHHHHHHHHHHHHcCCChhhccEEEecch
Confidence 899999999998753 233322 334333332 111111 112335566799999999999999999997554
Q ss_pred CC
Q 012221 362 ST 363 (468)
Q Consensus 362 gt 363 (468)
|.
T Consensus 231 g~ 232 (327)
T TIGR02845 231 AR 232 (327)
T ss_pred HH
Confidence 43
|
Bacillus and Clostridium species contain about 10 % dipicolinic acid (pyridine-2,6-dicarboxylic acid) by weight. This protein family, SpoVAD, belongs to the spoVA operon that is suggested to act in the transport of dipicolinic acid (DPA) from the mother cell, where DPA is synthesized, to the forespore, a process essential to sporulation. Members of this protein family are found, so far, in exactly those species believed capable of endospore formation. |
| >PLN03173 chalcone synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=6.3e-12 Score=125.91 Aligned_cols=293 Identities=14% Similarity=0.130 Sum_probs=168.3
Q ss_pred CcEEEEeeceeccCC-CCHHHHHHHHHcCC-----CCccc-cCC-CCCCCCCCccccccCC-CC--CCCC------CCcc
Q 012221 56 KRVVITGMGLVSVFG-NDVDAYYNKLLDGE-----SGITM-IDR-FDASKFPTRFGGQIRG-FS--AEGY------IDGK 118 (468)
Q Consensus 56 ~~V~ItG~g~~~p~g-~~~~~~~~~L~~G~-----~~i~~-~~~-~~~~~~~~~~~g~v~~-~d--~~~~------i~~~ 118 (468)
-+..|.|+|...|.- ...+++.+.+..-- ...+. +.+ ++..+...|+....++ ++ +..+ +..+
T Consensus 15 ~~~~i~~i~ta~P~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~i~~~sgI~~R~~~~~~~~~~~~~~~~~~~~p~~~~r 94 (391)
T PLN03173 15 GPATIMAIGTSTPPNCVDQSTYPDYYFRITNSEHKVELKEKFKRMCEKSMIKKRYMHLTEEILKENPSVCEYMAPSLDAR 94 (391)
T ss_pred CCeEEEEEEccCCCcccCHHHHHHHHHHHhccccchhHHHHHHHHHHhCCCCeeeEeccchhhhhCcccccccCCCHHHH
Confidence 347899999999998 45555655554322 21221 222 3334444444322111 10 1110 1222
Q ss_pred ccccCCHHHHHHHHHHHHHHHHcCCCCccccccccccceEEEeecCCCccchHHHHHHHHHhCCCCcCCcCcchhhhhhh
Q 012221 119 NDRRLDDCLRYCIVAGKKALEDADLGADISKKIDKERAGVLVGTGMGGLTVFSDGVQALIEKGHRKITPFFIPYAITNMG 198 (468)
Q Consensus 119 ~~~~~d~~~~l~l~a~~~AL~dAgl~~~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~ 198 (468)
......-...|+.+|+++||+++|+ ++++++ -+++.++.+ +.+ ...
T Consensus 95 ~~~~~~~a~~La~~Aa~~AL~~ag~---~~~dId----~li~~t~t~----------------------~~~-----P~~ 140 (391)
T PLN03173 95 QDMVVVEVPKLGKEAAAKAIKEWGQ---PKSKIT----HLVFCTTSG----------------------VDM-----PGA 140 (391)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCC---CHHHCC----EEEEEccCC----------------------Ccc-----cHH
Confidence 2233334558999999999999999 556665 455555422 111 124
Q ss_pred HHHHhhhhCCCCc---ceeecccChHHHHHHHHHHHHHHhCCCCEEEEEeeccccchhhhhHhhhccccccCCCCCCCCC
Q 012221 199 SALLAIDLGFMGP---NYSISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTAS 275 (468)
Q Consensus 199 a~~ia~~lgl~Gp---~~~v~~acas~l~Al~~A~~~I~~G~~d~~lvgG~e~~~~p~~~~~~~~~~~l~~~~~~~~~~~ 275 (468)
+.++...||++.- .+.+..+|++++.+|..|.++++++....|||.++|.+...+ . . +++
T Consensus 141 a~~l~~~LGl~~~~~~~~~~~~gC~g~~~aL~~A~~~~~~~~~~~vLVV~~E~~S~~~--~--------~-----~~d-- 203 (391)
T PLN03173 141 DYQLTKLLGLRSSVKRFMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTF--R--------G-----PSD-- 203 (391)
T ss_pred HHHHHHHhCCCccceeeehhcCccHHHHHHHHHHHHHHHhCCCCeEEEEEEehhhhhh--C--------C-----ccc--
Confidence 7788889999763 456799999999999999999999999999999999622100 0 0 000
Q ss_pred CCCCCCCCCeeecceeEEEEecchhHHHhcCC-ceEEEEEEEEE----cC----------CCCC--CC--CCCCChHHHH
Q 012221 276 RPWDKDRDGFVMGEGAGVLVMESLEHAMKRGA-PIIAEYLGGAV----NC----------DAYH--MT--DPRADGLGVS 336 (468)
Q Consensus 276 rpfd~~~~G~v~gEGaaavvL~~~~~A~~~g~-~i~a~i~g~~~----~~----------d~~~--~~--~~~~~~~~~~ 336 (468)
+..+......++||||+|+||+..+. .+. ++.-++.+... .. .|.+ +. .|..-...+.
T Consensus 204 ~~~~~~v~~~LFGDGAaAvvl~~~~~---~~~~~~~~~l~~~~~~~~~~t~~~~~~~i~~~G~~~~l~~~vp~~~~~~~~ 280 (391)
T PLN03173 204 THLDSLVGQALFGDGAAAIIIGSDPV---LGVEKPLFELVSAAQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNVE 280 (391)
T ss_pred cchhhhhhhhhhcCceEEEEEeCCCC---CCcCCcceEEEeeeeEEecCCccceeeEEEcCceEEEEecHHHHHHHHHHH
Confidence 00000122467999999999986432 111 11113333221 11 1111 00 1111223566
Q ss_pred HHHHHHHHHcCCCCCCcCEEEEccCCCccCCHHHHHHHHHHhccC-CCcee-eecccccCccccchhHHHHHH
Q 012221 337 SCIESSLEDAGVSPEEVNYINAHATSTLAGDLAEINAIKKVFKNT-TGIKI-NATKSMIGHCLGAAGGLEAIA 407 (468)
Q Consensus 337 ~~i~~al~~Agl~~~dId~v~~h~~gt~~~D~~E~~al~~~f~~~-~~~~v-~s~k~~~Gh~~~AsG~~~l~~ 407 (468)
..++++|+++|++++|||++..|.-|....| ++.+.++-. +++.. ..+-..+|++.+||=.+-+-+
T Consensus 281 ~~i~~~L~~~gl~~~di~~~v~Hqgg~~Il~-----~v~~~LgL~~ekl~~s~~vl~~yGNtSSaSv~~vL~~ 348 (391)
T PLN03173 281 KSLTEAFKPLGISDWNSLFWIAHPGGPAILD-----QVEAKLALKPEKLRATRHVLSEYGNMSSACVLFILDE 348 (391)
T ss_pred HHHHHHHHhcCCCccccCeEEECCCcHHHHH-----HHHHHcCCChHHHHHHHHHHHHhCcchhhHHHHHHHH
Confidence 6789999999999999999999987776543 444544431 11111 123455788777664444433
|
|
| >PLN03168 chalcone synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.7e-11 Score=122.96 Aligned_cols=292 Identities=15% Similarity=0.119 Sum_probs=165.8
Q ss_pred CcEEEEeeceeccCC-CCHHHHHHHHHcCC-----CCccc-cCC-CCCCCCCCccccccCC-C--CCCC------CCCcc
Q 012221 56 KRVVITGMGLVSVFG-NDVDAYYNKLLDGE-----SGITM-IDR-FDASKFPTRFGGQIRG-F--SAEG------YIDGK 118 (468)
Q Consensus 56 ~~V~ItG~g~~~p~g-~~~~~~~~~L~~G~-----~~i~~-~~~-~~~~~~~~~~~g~v~~-~--d~~~------~i~~~ 118 (468)
-+..|.|+|...|.- ...+++.+.+..=- ...+. +.+ ++..+...|+....++ + .+.+ .+..+
T Consensus 14 ~~~~i~~i~ta~P~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~i~~~sgI~~R~~~~~~~~~~~~~~~~~~~~ps~~~r 93 (389)
T PLN03168 14 GPACVLGIGTAVPPAEFLQSEYPDFFFNITNCGEKEALKAKFKRICDKSGIRKRHMFLTEEVLKANPGICTYMEPSLNVR 93 (389)
T ss_pred CCeEEEEEeccCCCcccCHHHHHHHHHHhccccCcHHHHHHHHHHHHhcCCCeeeeeccccchhhCcccccccCCCHHHH
Confidence 458899999999998 45555555544321 11111 111 2333443343322110 0 1111 12223
Q ss_pred ccccCCHHHHHHHHHHHHHHHHcCCCCccccccccccceEEEeecCCCccchHHHHHHHHHhCCCCcCCcCcchhhhhhh
Q 012221 119 NDRRLDDCLRYCIVAGKKALEDADLGADISKKIDKERAGVLVGTGMGGLTVFSDGVQALIEKGHRKITPFFIPYAITNMG 198 (468)
Q Consensus 119 ~~~~~d~~~~l~l~a~~~AL~dAgl~~~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~ 198 (468)
......-...|+.+|+++||+++|+ ++++++ .++++++.+ +. ....
T Consensus 94 ~~~~~~~a~~La~~Aa~~AL~~ag~---~~~dId----~lI~~T~Tg----------------------~~-----~Ps~ 139 (389)
T PLN03168 94 HDIVVVQVPKLAAEAAQKAIKEWGG---RKSDIT----HIVFATTSG----------------------VN-----MPGA 139 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCC---CHHHCC----EEEEECCCC----------------------CC-----CccH
Confidence 3333445667999999999999999 666776 566666532 11 1223
Q ss_pred HHHHhhhhCCCCc---ceeecccChHHHHHHHHHHHHHHhCCCCEEEEEeeccccchhhhhHhhhccccccCCCCCCCCC
Q 012221 199 SALLAIDLGFMGP---NYSISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTAS 275 (468)
Q Consensus 199 a~~ia~~lgl~Gp---~~~v~~acas~l~Al~~A~~~I~~G~~d~~lvgG~e~~~~p~~~~~~~~~~~l~~~~~~~~~~~ 275 (468)
+.++...||++.- .+.+..+|++++.+|..|..+|++|....|||.++|.+.. .+. . ++.
T Consensus 140 a~~l~~~LGl~~~~~r~~d~~~gC~g~~~aL~~A~~~i~~~~~~~VLVV~~E~~S~--~~~---------~----~~~-- 202 (389)
T PLN03168 140 DHALAKLLGLKPTVKRVMMYQTGCFGGASVLRVAKDLAENNKGARVLAVASEVTAV--TYR---------A----PSE-- 202 (389)
T ss_pred HHHHHHHhCcCCcceeeeeeCCccHHHHHHHHHHHHHHHhCCCCEEEEEEEehhhh--hcc---------C----ccc--
Confidence 7788899999763 5889999999999999999999999999999999997321 110 0 000
Q ss_pred CCCCCCCCCeeecceeEEEEecchhHHHhcCCceEEEEEEEEEc----CCCC---CC-------C-C---CCCChHHHHH
Q 012221 276 RPWDKDRDGFVMGEGAGVLVMESLEHAMKRGAPIIAEYLGGAVN----CDAY---HM-------T-D---PRADGLGVSS 337 (468)
Q Consensus 276 rpfd~~~~G~v~gEGaaavvL~~~~~A~~~g~~i~a~i~g~~~~----~d~~---~~-------~-~---~~~~~~~~~~ 337 (468)
...+......++||||+|+||+..+... ....++. +...... .++. ++ . . |..-...+..
T Consensus 203 ~~~~~~~~~~LFGDGAaAvvl~~~~~~~-~~~~~~~-~~~~~~~~~p~s~~~~~~~~~~~g~~~~l~~~vp~~i~~~~~~ 280 (389)
T PLN03168 203 NHLDGLVGSALFGDGAGVYVVGSDPKPE-VEKALFE-VHWAGETILPESDGAIDGHLTEAGLIFHLMKDVPGLISKNIEK 280 (389)
T ss_pred ccHHHHhccccccCccEEEEEecCCCCc-cCCcceE-EEeeeeEEEcCCCCccCceEecCceEEEECHHHHHHHHHHHHH
Confidence 0011112356899999999999743211 0112222 2221110 1111 00 0 0 1111234455
Q ss_pred HHHHHHHHcCCCCCCcCEEEEccCCCccCCHHHHHHHHHHhccC-CCcee-eecccccCccccchhHHHH
Q 012221 338 CIESSLEDAGVSPEEVNYINAHATSTLAGDLAEINAIKKVFKNT-TGIKI-NATKSMIGHCLGAAGGLEA 405 (468)
Q Consensus 338 ~i~~al~~Agl~~~dId~v~~h~~gt~~~D~~E~~al~~~f~~~-~~~~v-~s~k~~~Gh~~~AsG~~~l 405 (468)
.++++|+..++...|++++..|--|.+..| ++.+.++-. +.+.. ..+-..+|++.+||=.+-|
T Consensus 281 ~l~~~l~~~~~~~~d~~~~v~Hqgg~~Il~-----~v~~~Lgl~~ek~~~s~~vl~~yGNtSSaSv~~vL 345 (389)
T PLN03168 281 FLNEARKCVGSPDWNEMFWAVHPGGPAILD-----QVEAKLKLTKDKMQGSRDILSEFGNMSSASVLFVL 345 (389)
T ss_pred HHHHHHHhcCCCccccceEEecCCcHHHHH-----HHHHHcCCCHHHHHHHHHHHHHhCccHhhhHHHHH
Confidence 677888888888788899999977776544 444444321 11211 1234567887776644333
|
|
| >PF02803 Thiolase_C: Thiolase, C-terminal domain; InterPro: IPR020617 Two different types of thiolase [, , ] are found both in eukaryotes and in prokaryotes: acetoacetyl-CoA thiolase (2 | Back alignment and domain information |
|---|
Probab=99.32 E-value=3.1e-12 Score=105.73 Aligned_cols=122 Identities=20% Similarity=0.312 Sum_probs=89.4
Q ss_pred ceEEEEEEEEEcCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCcCEEEEccCCCccCCHHHHHHHHHHhccCCCceee
Q 012221 308 PIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAGVSPEEVNYINAHATSTLAGDLAEINAIKKVFKNTTGIKIN 387 (468)
Q Consensus 308 ~i~a~i~g~~~~~d~~~~~~~~~~~~~~~~~i~~al~~Agl~~~dId~v~~h~~gt~~~D~~E~~al~~~f~~~~~~~v~ 387 (468)
+|+++|.+++... ..|...+.+...+++++|+++|++++|||++|.|..++. .++..++.+--...++|++
T Consensus 2 ~pla~i~~~~~~~-----~~P~~~~~~p~~A~~~al~~ag~~~~did~~Ei~EaFA~----~~l~~~~~lg~~~~~vN~~ 72 (123)
T PF02803_consen 2 KPLARIVGYASAG-----VDPEDMGLGPVPAARKALERAGLTPDDIDVIEINEAFAA----QVLAFLEALGLDPEKVNPN 72 (123)
T ss_dssp -ESEEEEEEEEEE-------GGGGGGTHHHHHHHHHHHHT--GGGESEEEE--SBHH----HHHHHHHHHTTGGGGBSTT
T ss_pred CeEEEEEEEEEEe-----cCHHHhCchHHHHHHHHHHHhCCCccccchhhccchhhh----HHHHhhccccccccccCcc
Confidence 5789999998876 345555566788999999999999999999999988775 4444444442234578888
Q ss_pred ecccccCccccchhHHHHHHHHHHHhcCCcCCCCCCCCCCCCCCcccccccccccCccEEEEEcccccCeeeEEEEee
Q 012221 388 ATKSMIGHCLGAAGGLEAIATVKAITTGWLHPSINQFNPEPSVEFDTVANKKQQHEVNVAISNSFGFGGHNSVVAFSA 465 (468)
Q Consensus 388 s~k~~~Gh~~~AsG~~~l~~~~~~l~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~g~gG~n~~~vl~~ 465 (468)
+..-.+|||.||||++.++.++++|+++ ..++++.+.-+-||...++||+|
T Consensus 73 GG~la~GHP~gasG~r~~~~l~~~L~~~---------------------------~~~~gla~~~~ggG~g~a~ller 123 (123)
T PF02803_consen 73 GGALALGHPLGASGARLVVELAHQLRRR---------------------------GGRYGLAAICAGGGQGSAVLLER 123 (123)
T ss_dssp --HHHH-BHTTTHHHHHHHHHHHHHHHH---------------------------TTSEEEEEEEETTTEEEEEEEEE
T ss_pred cccccccccccccccchhhhhHHHHHHh---------------------------chhhhhHHhcccceeeEEEEEEC
Confidence 8888899999999999999999999873 12467777778899999999986
|
3.1.9 from EC) and 3-ketoacyl-CoA thiolase (2.3.1.16 from EC). 3-ketoacyl-CoA thiolase (also called thiolase I) has a broad chain-length specificity for its substrates and is involved in degradative pathways such as fatty acid beta-oxidation. Acetoacetyl-CoA thiolase (also called thiolase II) is specific for the thiolysis of acetoacetyl-CoA and involved in biosynthetic pathways such as poly beta-hydroxybutyrate synthesis or steroid biogenesis. In eukaryotes, there are two forms of 3-ketoacyl-CoA thiolase: one located in the mitochondrion and the other in peroxisomes. There are two conserved cysteine residues important for thiolase activity. The first located in the N-terminal section of the enzymes is involved in the formation of an acyl-enzyme intermediate; the second located at the C-terminal extremity is the active site base involved in deprotonation in the condensation reaction. Mammalian nonspecific lipid-transfer protein (nsL-TP) (also known as sterol carrier protein 2) is a protein which seems to exist in two different forms: a 14 Kd protein (SCP-2) and a larger 58 Kd protein (SCP-x). The former is found in the cytoplasm or the mitochondria and is involved in lipid transport; the latter is found in peroxisomes. The C-terminal part of SCP-x is identical to SCP-2 while the N-terminal portion is evolutionary related to thiolases [].; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0008152 metabolic process; PDB: 2WUA_B 4E1L_B 3SVK_A 1WDK_D 1WDM_D 2D3T_D 1WDL_C 2IB8_B 2IBU_A 2IB9_C .... |
| >TIGR01835 HMG-CoA-S_prok 3-hydroxy-3-methylglutaryl CoA synthase, prokaryotic clade | Back alignment and domain information |
|---|
Probab=99.30 E-value=5e-10 Score=112.40 Aligned_cols=210 Identities=16% Similarity=0.183 Sum_probs=131.3
Q ss_pred HHHHHHHHHHHHHHHcCCCCccccccccccceEEEeecCCCccchHHHHHHHHHhCCCCcCCcCcchhhhhhhHHHHhhh
Q 012221 126 CLRYCIVAGKKALEDADLGADISKKIDKERAGVLVGTGMGGLTVFSDGVQALIEKGHRKITPFFIPYAITNMGSALLAID 205 (468)
Q Consensus 126 ~~~l~l~a~~~AL~dAgl~~~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~ia~~ 205 (468)
...|++.|+++||+++. +++++ -+++++..+... ....+..+...
T Consensus 49 ~~~la~~Aa~~aL~~a~-----~~~Id----~li~~t~s~~~~--------------------------~~s~a~~v~~~ 93 (379)
T TIGR01835 49 IVTMAASAAKPILDRND-----KQKID----MVIFGTESGIDQ--------------------------SKAAAVYVHGL 93 (379)
T ss_pred HHHHHHHHHHHHHHhCC-----HhhCC----EEEEEeCCCCCC--------------------------CCCHHHHHHHH
Confidence 36899999999999982 24454 466776532210 11236778888
Q ss_pred hCCCC--cceeecccChHHHHHHHHHHHHHHhCCCCEEEEEeeccccchhhhhHhhhccccccCCCCCCCCCCCCCCCCC
Q 012221 206 LGFMG--PNYSISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWDKDRD 283 (468)
Q Consensus 206 lgl~G--p~~~v~~acas~l~Al~~A~~~I~~G~~d~~lvgG~e~~~~p~~~~~~~~~~~l~~~~~~~~~~~rpfd~~~~ 283 (468)
||+++ +.+.+..+|++++.||..|..+|++|..+.+||.++|.... . .....
T Consensus 94 Lgl~~~~~~~dv~~aC~gg~~aL~~A~~~i~s~~~~~aLVv~~D~a~~------------------------~--~~~~~ 147 (379)
T TIGR01835 94 LGLQPFCRSFELKQACYGATAALQMAKGHVALSPDRKVLVIASDIAKY------------------------G--LESPG 147 (379)
T ss_pred hCCCCCceEEEeccccHHHHHHHHHHHHHHHcCCCCeEEEEEeehhhc------------------------c--cCCCC
Confidence 99975 77889999999999999999999999999999999995100 0 00111
Q ss_pred CeeecceeEEEEecchhHHHhcCCceEEEEE-EEEE-cCCCCCCCC------CCCChH--------HHHHHHHHHHHHcC
Q 012221 284 GFVMGEGAGVLVMESLEHAMKRGAPIIAEYL-GGAV-NCDAYHMTD------PRADGL--------GVSSCIESSLEDAG 347 (468)
Q Consensus 284 G~v~gEGaaavvL~~~~~A~~~g~~i~a~i~-g~~~-~~d~~~~~~------~~~~~~--------~~~~~i~~al~~Ag 347 (468)
-...||||+|+||++.. .++ .+. +... ..+...... |..++. .+..++++.|+++|
T Consensus 148 ~~~~GdGA~A~Ll~~~~-------~i~-~~~~~~~~~t~~~~df~~p~~~~~~~v~g~~s~~~y~~~~~~~~~~~l~~~g 219 (379)
T TIGR01835 148 EPTQGAGAVAMLVSADP-------KLL-AINEDSVLYTDDIMDFWRPNYSTTALVDGQYSNEQYLNAFENAWNDYAKRTG 219 (379)
T ss_pred CccccCccEEEEEecCC-------Cee-EEeccceeeecCCCCccCCCCCCceeECcHHHHHHHHHHHHHHHHHHHHHhC
Confidence 24689999999998632 222 221 1111 111111111 111222 34567889999999
Q ss_pred CCCCCcCEEEEccCCCccCCHHHHHHHHHHhccCC-C----ce-----eeecccccCccccchhHHHHHHH
Q 012221 348 VSPEEVNYINAHATSTLAGDLAEINAIKKVFKNTT-G----IK-----INATKSMIGHCLGAAGGLEAIAT 408 (468)
Q Consensus 348 l~~~dId~v~~h~~gt~~~D~~E~~al~~~f~~~~-~----~~-----v~s~k~~~Gh~~~AsG~~~l~~~ 408 (468)
++++|||++..|...++..- +++.++.+... + +. -.-.-..+||+.+||=.+.+..+
T Consensus 220 ~~~~did~~i~H~p~~~~~~----k~~~~~l~~~~~~~~~~~~~~~~~s~~~~~~~GN~~sas~~l~L~~~ 286 (379)
T TIGR01835 220 LSLADFAAFCFHVPFTKMGL----KALRHILKKNYEDEDESVQNAYLESIIYNREVGNLYTGSLYLGLASL 286 (379)
T ss_pred CCHHHcCEEEECCCCCcHHH----HHHHHHHhhcccccHHHHHHHhhhhhhhhhhcCchHhHHHHHHHHHH
Confidence 99999999999987666422 22222221100 0 00 00123478998888766666544
|
This clade of hydroxymethylglutaryl-CoA (HMG-CoA) synthases is found in a limited spectrum of mostly gram-positive bacteria which make isopentenyl pyrophosphate (IPP) via the mevalonate pathway. This pathway is found primarily in eukaryotes and archaea, but the bacterial homologs are distinct, having aparrently diverged after being laterally transferred from an early eukaryote. HMG-CoA synthase is the first step in the pathway and joins acetyl-CoA with acetoacetyl-CoA with the release of one molecule of CoA. The Borellia sequence may have resulted from a separate lateral transfer event. |
| >PRK08304 stage V sporulation protein AD; Validated | Back alignment and domain information |
|---|
Probab=99.23 E-value=2e-10 Score=109.40 Aligned_cols=175 Identities=22% Similarity=0.249 Sum_probs=117.6
Q ss_pred HHHHHHHHHHHHHHHcCCCCccccccccccceEEEeecCCCccchHHHHHHHHHhCCCCcCCcCcchhhhhhhHHHHhhh
Q 012221 126 CLRYCIVAGKKALEDADLGADISKKIDKERAGVLVGTGMGGLTVFSDGVQALIEKGHRKITPFFIPYAITNMGSALLAID 205 (468)
Q Consensus 126 ~~~l~l~a~~~AL~dAgl~~~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~ia~~ 205 (468)
...|+.+|+++||++||+ +++++| .+++|...+ . ...+..++..
T Consensus 56 eseLa~eAa~~ALekAGI---~~~DID----~lI~Gdll~---------------------------Q--~~sAs~vA~~ 99 (337)
T PRK08304 56 ERKMMEDAIQQALQKANL---KKSDID----YLLAGDLLN---------------------------Q--IISANFAARE 99 (337)
T ss_pred HHHHHHHHHHHHHHHcCC---CHHHCC----EEEEECCCC---------------------------C--cchHHHHHHH
Confidence 467999999999999999 666776 566664210 0 0124566677
Q ss_pred hCCCCcceeecccChHHHHHHHHHHHHHHhCCCCEEEEEeeccccchhhhhHhhhccccccCCCCCCCCCCCCCCCCCCe
Q 012221 206 LGFMGPNYSISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWDKDRDGF 285 (468)
Q Consensus 206 lgl~Gp~~~v~~acas~l~Al~~A~~~I~~G~~d~~lvgG~e~~~~p~~~~~~~~~~~l~~~~~~~~~~~rpfd~~~~G~ 285 (468)
+|+ |.+.|.++|+++..||..|+.+|++|.+|.+||++.+...+......|- +. -+..||.. -.
T Consensus 100 LGI--Pa~dV~gACST~~~AL~lAa~lI~SG~ad~VLVV~Ssh~s~aerqfr~P----~e------yg~qrp~t----aq 163 (337)
T PRK08304 100 LGI--PFLGLYGACSTMMESLALGSMLIDGGFADRVLAATSSHFATAERQFRFP----TE------YGGQRPPT----AQ 163 (337)
T ss_pred hCC--cEEEEeccCHHHHHHHHHHHHHHhcCCCCEEEEEEcchhhhhhhhccCc----hh------ccccCCCc----ce
Confidence 776 9999999999999999999999999999999999999633322111110 00 12234432 23
Q ss_pred eecceeEEEEecchhHHHhcCCceE----EEEEEEEEcCCCCCCCCCCCC----hHHHHHHHHHHHHHcCCCCCCcCEEE
Q 012221 286 VMGEGAGVLVMESLEHAMKRGAPII----AEYLGGAVNCDAYHMTDPRAD----GLGVSSCIESSLEDAGVSPEEVNYIN 357 (468)
Q Consensus 286 v~gEGaaavvL~~~~~A~~~g~~i~----a~i~g~~~~~d~~~~~~~~~~----~~~~~~~i~~al~~Agl~~~dId~v~ 357 (468)
..++||+++||.+.. .+.+|- ++|..++. .+|... ..+....|.+=|++.|.+|+|-|.|.
T Consensus 164 wtvtGAGA~i~~~~~----~~~~i~~~t~Gkv~D~g~-------~d~~nmgaaMapAa~dti~~h~~d~~~~~~~yDli~ 232 (337)
T PRK08304 164 WTVTGAGAVLLSREG----SGPRITHATIGKVVDLGI-------KDPNDMGAAMAPAAADTIQQHFKDTGRSPEDYDLIV 232 (337)
T ss_pred EEeeccEEEEEecCC----CCceEEEEeEEEEEecCC-------CCcccchhhhhHHHHHHHHHHHHHcCCChhhccEEE
Confidence 678899999998632 122221 22333322 223222 34556679999999999999999999
Q ss_pred EccCCC
Q 012221 358 AHATST 363 (468)
Q Consensus 358 ~h~~gt 363 (468)
.-+-|.
T Consensus 233 tGDlg~ 238 (337)
T PRK08304 233 TGDLGR 238 (337)
T ss_pred EcchHH
Confidence 765543
|
|
| >COG3425 PksG 3-hydroxy-3-methylglutaryl CoA synthase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.5e-09 Score=103.50 Aligned_cols=264 Identities=22% Similarity=0.296 Sum_probs=165.6
Q ss_pred cEEEEeeceeccCC-CCHHHHHHHHHcCCCCccccCCCCCCCCCCccccccCCCCCCCCCCccccccCCHHHHHHHHHHH
Q 012221 57 RVVITGMGLVSVFG-NDVDAYYNKLLDGESGITMIDRFDASKFPTRFGGQIRGFSAEGYIDGKNDRRLDDCLRYCIVAGK 135 (468)
Q Consensus 57 ~V~ItG~g~~~p~g-~~~~~~~~~L~~G~~~i~~~~~~~~~~~~~~~~g~v~~~d~~~~i~~~~~~~~d~~~~l~l~a~~ 135 (468)
.|-|.|+|...|.- .+.+|+.++.. ++...+....+ +.... +-+.. ....-|+++|++
T Consensus 2 ~iGI~~~g~y~p~~~i~~~ela~~~g-----------~d~~k~~~gl~--~~e~s---v~~~~-----ED~vTmaveAA~ 60 (377)
T COG3425 2 MIGIVGIGAYIPRYRIKLEELARAWG-----------VDPEKIKKGLG--VEEKS---VPPWD-----EDAVTMAVEAAR 60 (377)
T ss_pred ccccceEEEeccceEeeHHHHHhhcC-----------CChHHhhhccc--ccccc---CCCCc-----hhHHHHHHHHHH
Confidence 47799999999987 67777654421 11111100000 00000 00111 235679999999
Q ss_pred HHHHHcCCCCccccccccccceEEEeecCCCccchHHHHHHHHHhCCCCcCCcCcchhhhhhhHHHHhhhhCCCCcc--e
Q 012221 136 KALEDADLGADISKKIDKERAGVLVGTGMGGLTVFSDGVQALIEKGHRKITPFFIPYAITNMGSALLAIDLGFMGPN--Y 213 (468)
Q Consensus 136 ~AL~dAgl~~~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~ia~~lgl~Gp~--~ 213 (468)
++|+++++ ++.+++ .|++||..+... ..| .+..|+..||+.--. +
T Consensus 61 ~~l~r~~~---D~~~Ig----~v~vgTES~~d~----------------~K~----------~at~v~~~lg~~~~~~~~ 107 (377)
T COG3425 61 NALKRADI---DPSKIG----AVIVGSESGPDA----------------VKP----------TATIVAEALGLNPSARAA 107 (377)
T ss_pred HHHhccCC---CHHHCc----eEEEecCCCccc----------------ccc----------hHHHHHHHhCCCCceehh
Confidence 99999988 444544 588888543221 111 266788889986533 3
Q ss_pred eecccChHHHHHHHHHHHHHHhCCCCEEEEEeeccccchhhhhHhhhccccccCCCCCCCCCCCCCCCCCCeeecceeEE
Q 012221 214 SISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWDKDRDGFVMGEGAGV 293 (468)
Q Consensus 214 ~v~~acas~l~Al~~A~~~I~~G~~d~~lvgG~e~~~~p~~~~~~~~~~~l~~~~~~~~~~~rpfd~~~~G~v~gEGaaa 293 (468)
-+..+|-++..||++|..+|.+|..+.+||.|.|..... |..... +.-|.|++|
T Consensus 108 d~~~AC~agT~aL~~a~~~v~s~~~~~~LvI~sD~a~~~------------------~~~~~E--------~t~GAGavA 161 (377)
T COG3425 108 DVEFACYAGTAALQAAIGWVESGMISYGLVIGADTAQYA------------------PGDALE--------YTAGAGAVA 161 (377)
T ss_pred hHHHHHHHHHHHHHHHHHHHHcCCccceEEEeehhhccC------------------CCcccC--------ccCCCceEE
Confidence 477899999999999999999999999999999961100 111122 367899999
Q ss_pred EEecchhHHHhcCCceEEEEEEEEEc-CCCCCCCC------CCCCh--------HHHHHHHHHHHHHcCCCCCCcCEEEE
Q 012221 294 LVMESLEHAMKRGAPIIAEYLGGAVN-CDAYHMTD------PRADG--------LGVSSCIESSLEDAGVSPEEVNYINA 358 (468)
Q Consensus 294 vvL~~~~~A~~~g~~i~a~i~g~~~~-~d~~~~~~------~~~~~--------~~~~~~i~~al~~Agl~~~dId~v~~ 358 (468)
+|++.. ..+.+++.+.+.. .|-...-. |..++ ..+..+.+..+++.|++|+|.||+..
T Consensus 162 ~lIg~n-------~~~~a~~~~~~syt~d~~DFwRp~~~~yp~~dg~~s~~~Y~~~~~~a~~~~~~k~gls~~dfdy~vf 234 (377)
T COG3425 162 FLIGKN-------PPIVAEFEGTGSYTTDTPDFWRPDGQPYPYVDGRFSEPAYFKHVENAAKGYMEKTGLSPDDFDYIVF 234 (377)
T ss_pred EEEccC-------CCeEEEecCceEEecCCCcccccCCCcccccCceecHHHHHHHHHHHHHHHHHHhCCChhhhCeEEe
Confidence 999852 3445666454432 23222222 22222 35667788888999999999999999
Q ss_pred ccCCCccCCHHHHHHHHHHhccCCCceeee-cccccCccccchhHHHHHHHHHH
Q 012221 359 HATSTLAGDLAEINAIKKVFKNTTGIKINA-TKSMIGHCLGAAGGLEAIATVKA 411 (468)
Q Consensus 359 h~~gt~~~D~~E~~al~~~f~~~~~~~v~s-~k~~~Gh~~~AsG~~~l~~~~~~ 411 (468)
|.+.++. =..+++.+.-..+.+.-+- ....+|.+..+|..++++.++-.
T Consensus 235 H~P~~k~----~~ka~k~l~~~~e~v~~~l~~~~~vGN~YtgS~~L~Las~L~~ 284 (377)
T COG3425 235 HQPNGKF----PKKAAKSLGFKEEQVKPGLVYPQRIGNTYTGSLLLGLASLLDN 284 (377)
T ss_pred cCCCCch----HHHHHHHhCccHhhcCccchhhhhcCcccchhHHHHHHHHHhh
Confidence 9988874 3445555433312222222 22368999999988888776543
|
|
| >PF00108 Thiolase_N: Thiolase, N-terminal domain; InterPro: IPR020616 Two different types of thiolase [, , ] are found both in eukaryotes and in prokaryotes: acetoacetyl-CoA thiolase (2 | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.3e-10 Score=110.50 Aligned_cols=91 Identities=32% Similarity=0.341 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHHHHHcCCCCccccccccccceEEEeecCCCccchHHHHHHHHHhCCCCcCCcCcchhhhhhhHHHHhhh
Q 012221 126 CLRYCIVAGKKALEDADLGADISKKIDKERAGVLVGTGMGGLTVFSDGVQALIEKGHRKITPFFIPYAITNMGSALLAID 205 (468)
Q Consensus 126 ~~~l~l~a~~~AL~dAgl~~~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~ia~~ 205 (468)
...|+.++++++|+++++ ++++++ .|++|+..+.... ..++..++..
T Consensus 26 ~~~L~~~a~~~al~~~~i---~~~~Id----~v~~G~~~~~~~g--------------------------~~~ar~~~l~ 72 (264)
T PF00108_consen 26 PEDLAAEAVKAALERAGI---DPEDID----AVIVGNVLQEGEG--------------------------QNIARQAALA 72 (264)
T ss_dssp HHHHHHHHHHHHHHHHTS---HGGGEE----EEEEE-SSSCTTT--------------------------CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccc---chhhhh----hcCcccccccccc--------------------------hhhhhhhhhh
Confidence 567899999999999999 667777 6899986542221 1224455556
Q ss_pred hCC--CCcceeecccChHHHHHHHHHHHHHHhCCCCEEEEEeeccc
Q 012221 206 LGF--MGPNYSISTACATSNYCFYAAANHIRRGEADLMLAGGTEAA 249 (468)
Q Consensus 206 lgl--~Gp~~~v~~acas~l~Al~~A~~~I~~G~~d~~lvgG~e~~ 249 (468)
.|| +-|.++|+.+|+||+.||++|++.|++|++|++|+||+|++
T Consensus 73 aGl~~~vp~~~V~~~CaSG~~Av~~a~~~I~sG~~dvvlagGvE~m 118 (264)
T PF00108_consen 73 AGLPESVPATTVNRACASGLQAVHLAAMAIASGEADVVLAGGVESM 118 (264)
T ss_dssp TTS-TTSEEEEEE-GGGHHHHHHHHHHHHHHTTS-SEEEEEEEEET
T ss_pred cccccccceeeehhhhhHHHHHHHHhhhhhcCCCccEEEEeccccc
Confidence 676 34999999999999999999999999999999999999984
|
3.1.9 from EC) and 3-ketoacyl-CoA thiolase (2.3.1.16 from EC). 3-ketoacyl-CoA thiolase (also called thiolase I) has a broad chain-length specificity for its substrates and is involved in degradative pathways such as fatty acid beta-oxidation. Acetoacetyl-CoA thiolase (also called thiolase II) is specific for the thiolysis of acetoacetyl-CoA and involved in biosynthetic pathways such as poly beta-hydroxybutyrate synthesis or steroid biogenesis. In eukaryotes, there are two forms of 3-ketoacyl-CoA thiolase: one located in the mitochondrion and the other in peroxisomes. There are two conserved cysteine residues important for thiolase activity. The first located in the N-terminal section of the enzymes is involved in the formation of an acyl-enzyme intermediate; the second located at the C-terminal extremity is the active site base involved in deprotonation in the condensation reaction. Mammalian nonspecific lipid-transfer protein (nsL-TP) (also known as sterol carrier protein 2) is a protein which seems to exist in two different forms: a 14 Kd protein (SCP-2) and a larger 58 Kd protein (SCP-x). The former is found in the cytoplasm or the mitochondria and is involved in lipid transport; the latter is found in peroxisomes. The C-terminal part of SCP-x is identical to SCP-2 while the N-terminal portion is evolutionary related to thiolases [].; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0008152 metabolic process; PDB: 1PXT_B 1AFW_B 1WL4_A 1WL5_A 4E1L_B 1WDK_D 1WDM_D 2D3T_D 1WDL_C 2WUA_B .... |
| >PLN02854 3-ketoacyl-CoA synthase | Back alignment and domain information |
|---|
Probab=99.20 E-value=5.9e-09 Score=106.54 Aligned_cols=317 Identities=13% Similarity=0.074 Sum_probs=171.4
Q ss_pred CCcEEEEeeceeccCC---CCHHHHHHHHHcCCCCccc--c---CC-CCCCCCCCccccccCCCCCCCC-CCccc--ccc
Q 012221 55 KKRVVITGMGLVSVFG---NDVDAYYNKLLDGESGITM--I---DR-FDASKFPTRFGGQIRGFSAEGY-IDGKN--DRR 122 (468)
Q Consensus 55 ~~~V~ItG~g~~~p~g---~~~~~~~~~L~~G~~~i~~--~---~~-~~~~~~~~~~~g~v~~~d~~~~-i~~~~--~~~ 122 (468)
.++|+.+-++|.-|.- .+.+.|.+....-. .+.+ + .+ ...+++ |+-.-+++..+ ++++. ...
T Consensus 111 ~~~vylvd~~c~~p~~~~~~~~~~~~~~~~~~~-~~~~~~~~f~~~~~~~sg~-----g~~ty~P~~~~~~~~~~~~~~~ 184 (521)
T PLN02854 111 SKPVYLVDFACYKPEDERKISVDSFLTMTEENG-SFEDETVQFQRRISTRSGL-----GDETYLPRGITSRPPNLCMEEA 184 (521)
T ss_pred CCcEEEEeeeeecCCccccccHHHHHHHHHHcC-CCCHHHHHHHHHHHHhcCC-----CCccccCccccCCCCcchHHHH
Confidence 4579999999999987 46677776664321 1111 0 00 000111 00000111111 22211 111
Q ss_pred CCHHHHHHHHHHHHHHHHcCCCCccccccccccceEEEeecCCCccchHHHHHHHHHhCCCCcCCcCcchhhhhhhHHHH
Q 012221 123 LDDCLRYCIVAGKKALEDADLGADISKKIDKERAGVLVGTGMGGLTVFSDGVQALIEKGHRKITPFFIPYAITNMGSALL 202 (468)
Q Consensus 123 ~d~~~~l~l~a~~~AL~dAgl~~~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~i 202 (468)
..........++.++|+++|+ +++++| -+++.++ +. ......+..|
T Consensus 185 r~ea~~v~~~~~~~lL~kaGi---~p~dID----~LIv~cS-~~--------------------------~p~PSlAa~I 230 (521)
T PLN02854 185 RAEAEAVMFGALDSLFSKTGV---KPRDIG----ILIVNCS-LF--------------------------NPTPSLSAMI 230 (521)
T ss_pred HHHHHHHHHHHHHHHHHHcCC---CHHHCC----EEEEECC-CC--------------------------CCCCCHHHHH
Confidence 223445566788899999999 555665 3444332 10 0122347888
Q ss_pred hhhhCCCC--cceeec-ccChHHHHHHHHHHHHHHhCCCCEEEEEeeccccchhhhhHhhhccccccCCCCCCCCCCCCC
Q 012221 203 AIDLGFMG--PNYSIS-TACATSNYCFYAAANHIRRGEADLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWD 279 (468)
Q Consensus 203 a~~lgl~G--p~~~v~-~acas~l~Al~~A~~~I~~G~~d~~lvgG~e~~~~p~~~~~~~~~~~l~~~~~~~~~~~rpfd 279 (468)
...+|++. .++.++ .||++++.+|..|.++|+.+....+||.++|.. +. .+. +-+
T Consensus 231 ~n~LGlr~~i~afdLsgmGCSggl~aL~lA~~lL~~~~~~~aLVVstE~~-S~-~~y--------------------~g~ 288 (521)
T PLN02854 231 VNHYKLRTDIKSYNLGGMGCSAGLISIDLANDLLKANPNSYAVVVSTENI-TL-NWY--------------------FGN 288 (521)
T ss_pred HHHhCCCCCceEEecccchhhhHHHHHHHHHHHHHhCCCCeEEEEEEeee-ec-CCC--------------------CCC
Confidence 89999974 577888 799999999999999999999999999999973 21 110 001
Q ss_pred CCCC---CeeecceeEEEEecchhHHHhc-CCceEEEEEEEEEcCC--------------CC---CCCC--CCCChH---
Q 012221 280 KDRD---GFVMGEGAGVLVMESLEHAMKR-GAPIIAEYLGGAVNCD--------------AY---HMTD--PRADGL--- 333 (468)
Q Consensus 280 ~~~~---G~v~gEGaaavvL~~~~~A~~~-g~~i~a~i~g~~~~~d--------------~~---~~~~--~~~~~~--- 333 (468)
.... ..++||||||+||++.+....+ .-++.. +.......| |. .... +...+.
T Consensus 289 Drs~lv~~~LFgDGAAAvlLs~~~~~~~~~k~~L~~-~v~t~~~ad~~~~~~i~~~~d~~G~~g~~lsk~l~~va~~~l~ 367 (521)
T PLN02854 289 DRSMLLCNCIFRMGGAAVLLSNKARDRKRSKYQLVH-TVRTHKGADDKNYNCVYQREDDKGTIGVSLARELMAVAGDALK 367 (521)
T ss_pred chhhhcceeeeccceeEEEEecccccccccchheee-EEEEEEeeCCCccCeEEeccCCCCcccccccccccchhhhhhh
Confidence 1111 4588999999999874311110 011111 111111111 10 0000 000000
Q ss_pred ------------------HHHHHHHHHHHHcCCCC------CCcCEEEEccCCCccCCHHHHHHHHHHhccC--CCceee
Q 012221 334 ------------------GVSSCIESSLEDAGVSP------EEVNYINAHATSTLAGDLAEINAIKKVFKNT--TGIKIN 387 (468)
Q Consensus 334 ------------------~~~~~i~~al~~Agl~~------~dId~v~~h~~gt~~~D~~E~~al~~~f~~~--~~~~v~ 387 (468)
-....+++.|.++|+++ +|||++..|.-|...-| ++.+-++-. ..-+.-
T Consensus 368 ~~i~~~g~~Vl~~se~~~f~~~~i~~~L~~~gl~~~~pd~~~didhf~iHqggr~IId-----~v~k~LgL~~~~~e~sr 442 (521)
T PLN02854 368 TNITTLGPLVLPLSEQFMFFVTLVRRKLLKAKVKPYIPDFKLAFEHFCIHAGGRAVLD-----ELQKNLQLSDWHMEPSR 442 (521)
T ss_pred hhhhhccccccchHHHHHHHHHHHHHHHHHcCCCccCCcccccCcEEEECCCCHHHHH-----HHHHHcCCCcccccchH
Confidence 02446888899999987 69999999987776543 444444331 011222
Q ss_pred ecccccCccccchhHHHHHHHHHHHhcCCcCCCCCCCCCCCCCCcccccccccccCccEEEEEcccccCeeeEEEEeec
Q 012221 388 ATKSMIGHCLGAAGGLEAIATVKAITTGWLHPSINQFNPEPSVEFDTVANKKQQHEVNVAISNSFGFGGHNSVVAFSAF 466 (468)
Q Consensus 388 s~k~~~Gh~~~AsG~~~l~~~~~~l~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~g~gG~n~~~vl~~~ 466 (468)
..-.-+|++.++|=.+.+..+ ++.|.+- +-+.++..+||.|=+-.++|++..
T Consensus 443 ~tL~rfGNTSSASI~~~L~~~---~~kGrik------------------------~GD~Vl~iaFGsGft~~sav~~~~ 494 (521)
T PLN02854 443 MTLHRFGNTSSSSLWYELAYT---EAKGRVS------------------------AGDRVWQIAFGSGFKCNSAVWKAL 494 (521)
T ss_pred HHhhhcCChHhhHHHHHHHHH---HHcCCCC------------------------CCCEEEEEEEchhhhhhheeeEEe
Confidence 333445776666533333332 2344321 123455568887766666666543
|
|
| >PLN02377 3-ketoacyl-CoA synthase | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.3e-08 Score=103.95 Aligned_cols=182 Identities=10% Similarity=0.102 Sum_probs=112.5
Q ss_pred CCcEEEEeeceeccCC---CCHHHHHHHHHcCCCCccc--cC---C-CCCCCCCCccccccCCCCCCC-CCCc--ccccc
Q 012221 55 KKRVVITGMGLVSVFG---NDVDAYYNKLLDGESGITM--ID---R-FDASKFPTRFGGQIRGFSAEG-YIDG--KNDRR 122 (468)
Q Consensus 55 ~~~V~ItG~g~~~p~g---~~~~~~~~~L~~G~~~i~~--~~---~-~~~~~~~~~~~g~v~~~d~~~-~i~~--~~~~~ 122 (468)
.++|+.+-++|.-|.- .+.+.|.+..+.-. .+.+ ++ | +..+++.... . +++.. ++++ .....
T Consensus 95 ~~~vylvd~~c~~p~~~~~~~~~~~~~~~~~~~-~~~~~~~~f~~ri~~~sgig~~t--~---~p~~~~~~~~~~~~~~~ 168 (502)
T PLN02377 95 PRPVYLVDYSCYRAPDHLKAPFARFMEHSRLTG-DFDDSSLEFQRKILERSGLGEDT--Y---VPEAMHYIPPRPSMAAA 168 (502)
T ss_pred CCCEEEEeeeeecCCccccccHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCCCcc--c---cCchhccCCccchHHHH
Confidence 4579999999999987 45677776654321 1111 00 0 0001110000 0 11000 0121 11222
Q ss_pred CCHHHHHHHHHHHHHHHHcCCCCccccccccccceEEEeecCCCccchHHHHHHHHHhCCCCcCCcCcchhhhhhhHHHH
Q 012221 123 LDDCLRYCIVAGKKALEDADLGADISKKIDKERAGVLVGTGMGGLTVFSDGVQALIEKGHRKITPFFIPYAITNMGSALL 202 (468)
Q Consensus 123 ~d~~~~l~l~a~~~AL~dAgl~~~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~i 202 (468)
......++..|+.+||+++|+ +++++| -+++ ++.+. ......+..|
T Consensus 169 ~~ea~~l~~~A~~~aL~kaGi---~p~dID----~LVv-~cS~~--------------------------~~~PSlaa~V 214 (502)
T PLN02377 169 REEAEQVMFGALDNLFANTNV---NPKDIG----ILVV-NCSLF--------------------------NPTPSLSAMI 214 (502)
T ss_pred HHHHHHHHHHHHHHHHHHcCC---CHHHCC----EEEE-ECCCC--------------------------CCCCcHHHHH
Confidence 344667899999999999999 556665 2333 33211 0122347888
Q ss_pred hhhhCCCC--cceeec-ccChHHHHHHHHHHHHHHhCCCCEEEEEeeccccchhhhhHhhhccccccCCCCCCCCCCCCC
Q 012221 203 AIDLGFMG--PNYSIS-TACATSNYCFYAAANHIRRGEADLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWD 279 (468)
Q Consensus 203 a~~lgl~G--p~~~v~-~acas~l~Al~~A~~~I~~G~~d~~lvgG~e~~~~p~~~~~~~~~~~l~~~~~~~~~~~rpfd 279 (468)
...||++. .++.++ .||++++.+|..|.++|+.+....+||.++|. ++.... ++
T Consensus 215 ~~~LGlr~~v~afdL~gmGCsggl~aL~lA~~ll~~~~~~~aLVVstE~-~S~~~~----------------------~~ 271 (502)
T PLN02377 215 VNKYKLRGNIRSFNLGGMGCSAGVIAVDLAKDMLQVHRNTYAVVVSTEN-ITQNWY----------------------FG 271 (502)
T ss_pred HHHhCCCCCCeEEecccchhhHHHHHHHHHHHHHHcCCCCEEEEEEEec-cccccC----------------------CC
Confidence 99999984 788899 59999999999999999999999999999997 222110 11
Q ss_pred CCCC----CeeecceeEEEEecch
Q 012221 280 KDRD----GFVMGEGAGVLVMESL 299 (468)
Q Consensus 280 ~~~~----G~v~gEGaaavvL~~~ 299 (468)
+++. ..++||||||+||+..
T Consensus 272 d~~s~lv~n~LFgDGAaAvlLs~~ 295 (502)
T PLN02377 272 NKKSMLIPNCLFRVGGSAVLLSNK 295 (502)
T ss_pred CCccccccceeeccccEEEEEecc
Confidence 1122 3578999999999874
|
|
| >PF13723 Ketoacyl-synt_2: Beta-ketoacyl synthase, N-terminal domain | Back alignment and domain information |
|---|
Probab=99.10 E-value=9.4e-10 Score=100.22 Aligned_cols=124 Identities=19% Similarity=0.296 Sum_probs=111.1
Q ss_pred CCCCccccccCCHHHHHHHHHHHHHHHHcCCCCccccccccccceEEEeecCCCccchHHHHHHHHHhCCCCcCCcCcch
Q 012221 113 GYIDGKNDRRLDDCLRYCIVAGKKALEDADLGADISKKIDKERAGVLVGTGMGGLTVFSDGVQALIEKGHRKITPFFIPY 192 (468)
Q Consensus 113 ~~i~~~~~~~~d~~~~l~l~a~~~AL~dAgl~~~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (468)
.+|++.+.|||++..||++.++.+++++.. +++ .+++++..|+.....+.++.+.+. ..++|..|..
T Consensus 21 ~~lp~m~rRRls~~~rla~~~a~~~~~~~~-------~~d----~~VfaS~~Gel~~t~~ll~~l~~~--~~lSPT~Fs~ 87 (218)
T PF13723_consen 21 AFLPPMQRRRLSRLSRLALEAALECLAEDE-------QPD----AIVFASRHGELERTFKLLEALAEE--EELSPTAFSQ 87 (218)
T ss_pred ccCCHHHHcccCHHHHHHHHHHHHHHhccC-------CCC----cEEEEeCCCcHHHHHHHHHHHHhC--CCcCccchhh
Confidence 358999999999999999999999986521 112 789999999999999999998875 3599999999
Q ss_pred hhhhhhHHHHhhhhCCCCcceeecccChHHHHHHHHHHHHHHhCCCCEEEEEeecccc
Q 012221 193 AITNMGSALLAIDLGFMGPNYSISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAI 250 (468)
Q Consensus 193 ~~~n~~a~~ia~~lgl~Gp~~~v~~acas~l~Al~~A~~~I~~G~~d~~lvgG~e~~~ 250 (468)
+++|.+++++++..+.++|++++..+-.+...||..|+..+..| ++.||++.+|..+
T Consensus 88 SVHNA~aG~~sI~~~~~~~~tal~a~~~sf~~aLleA~~~l~~~-~~~VLlv~~De~~ 144 (218)
T PF13723_consen 88 SVHNAAAGYWSIATKNTGPNTALAAGEDSFEAALLEAAAQLAEG-AEPVLLVCYDEPL 144 (218)
T ss_pred hhhhHHHHHHHHHhCCCCceEEEecCcchHHHHHHHHHHHHHcC-CCCEEEEEeCCCC
Confidence 99999999999999999999999999999999999999999999 8999999999833
|
|
| >PLN02577 hydroxymethylglutaryl-CoA synthase | Back alignment and domain information |
|---|
Probab=99.09 E-value=4e-09 Score=106.83 Aligned_cols=224 Identities=18% Similarity=0.189 Sum_probs=132.5
Q ss_pred CcEEEEeeceeccCC-CCHHHHHHHHHcCCCCccccCCCCCCCCCCccccccCCCCCCCCCCccccccCCHHHHHHHHHH
Q 012221 56 KRVVITGMGLVSVFG-NDVDAYYNKLLDGESGITMIDRFDASKFPTRFGGQIRGFSAEGYIDGKNDRRLDDCLRYCIVAG 134 (468)
Q Consensus 56 ~~V~ItG~g~~~p~g-~~~~~~~~~L~~G~~~i~~~~~~~~~~~~~~~~g~v~~~d~~~~i~~~~~~~~d~~~~l~l~a~ 134 (468)
++|-|.|+|...|.- .+.+++.+.+ |.+ +.|-..++..+... + ..+ -.....|++.|+
T Consensus 3 ~~vgI~gig~Y~P~~~v~n~eLa~~~--g~~-----~~~~~~GI~~r~~a----v-----a~~-----~Ed~~tmA~~AA 61 (459)
T PLN02577 3 KNVGILAMEVYFPPTCVQQEALEAHD--GVS-----KGKYTIGLGQDCMA----F-----CTD-----VEDVISMSLTVV 61 (459)
T ss_pred CccEEEEEEEeCCCeEEcHHHHHHHh--CCC-----HHHHhhccceeEec----c-----CCC-----CCCHHHHHHHHH
Confidence 368999999999998 6777776542 221 11111111111000 0 001 123568999999
Q ss_pred HHHHHHcCCCCccccccccccceEEEeecCCCccchHHHHHHHHHhCCCCcCCcCcchhhhhhhHHHHh---hhhCCCC-
Q 012221 135 KKALEDADLGADISKKIDKERAGVLVGTGMGGLTVFSDGVQALIEKGHRKITPFFIPYAITNMGSALLA---IDLGFMG- 210 (468)
Q Consensus 135 ~~AL~dAgl~~~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~ia---~~lgl~G- 210 (468)
+++|+++|+ ++++++ -|+++|..+... . ...+..|. ..+|.+.
T Consensus 62 ~~aL~~agi---d~~~Id----llivaTeT~~d~-----------------~---------ps~A~~v~~ll~~LG~~~~ 108 (459)
T PLN02577 62 KSLLEKYNI---DPKQIG----RLEVGSETVIDK-----------------S---------KSIKTFLMQLFEESGNTDI 108 (459)
T ss_pred HHHHHHcCC---CHHHCC----EEEEEcCCCCCC-----------------C---------CchHHHHHHHHHHhCCCCc
Confidence 999999999 556665 477777543111 0 11133443 3456654
Q ss_pred cceeecccChHHHHHHHHHHHHHHhCCC--CEEEEEeeccccchhhhhHhhhccccccCCCCCCCCCCCCCCCCCCeeec
Q 012221 211 PNYSISTACATSNYCFYAAANHIRRGEA--DLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWDKDRDGFVMG 288 (468)
Q Consensus 211 p~~~v~~acas~l~Al~~A~~~I~~G~~--d~~lvgG~e~~~~p~~~~~~~~~~~l~~~~~~~~~~~rpfd~~~~G~v~g 288 (468)
.++-+..+|.++..||..|..+|++|.. +.+||+|+|...... +..+| ..|
T Consensus 109 ~afDi~~AC~G~~~AL~~A~~~i~sg~~~~~~aLVV~aD~a~~~~-------------------~~~e~--------t~G 161 (459)
T PLN02577 109 EGVDSTNACYGGTAALLNCVNWVESSSWDGRYGLVVAADSAVYAE-------------------GPARP--------TGG 161 (459)
T ss_pred EEeehhhhhHHHHHHHHHHHHHHHcCCCCCCeEEEEEechhhccC-------------------CCCCC--------CCC
Confidence 7788999999999999999999999975 999999999611000 00111 339
Q ss_pred ceeEEEEecchhHHHhcCCceEEEEEEEEEcCCCCCCCCCC-------CChH--------HHHHHHHHHHHHc------C
Q 012221 289 EGAGVLVMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPR-------ADGL--------GVSSCIESSLEDA------G 347 (468)
Q Consensus 289 EGaaavvL~~~~~A~~~g~~i~a~i~g~~~~~d~~~~~~~~-------~~~~--------~~~~~i~~al~~A------g 347 (468)
+||+|+||++.+ .+ .+-....|..+. +.+.+..|. .+|. .+..++++.+++. |
T Consensus 162 dGA~A~lv~~~~----~~-~l~~~~~g~~~~-~~~Df~rP~~~~~~~~vdG~~s~~~yl~~~~~~~~~~~~k~~~~~~~g 235 (459)
T PLN02577 162 AGAVAMLVGPNA----PI-VFESKYRGSHMA-HVYDFYKPDLASEYPVVDGKLSQTCYLMALDSCYKRFCEKYEKLEGKQ 235 (459)
T ss_pred cceEEEEEccCC----Cc-eeecccccccCc-ccchhcccCCCCCceEEcchHHHHHHHHHHHHHHHHHHHHhhcccccC
Confidence 999999998532 10 000011111111 111121222 1332 3334455555555 8
Q ss_pred CCCCCcCEEEEccCCCccC
Q 012221 348 VSPEEVNYINAHATSTLAG 366 (468)
Q Consensus 348 l~~~dId~v~~h~~gt~~~ 366 (468)
++++|+||+..|-..+++.
T Consensus 236 ~~~~d~d~~vfHqP~~km~ 254 (459)
T PLN02577 236 FSISDADYFVFHAPYNKLV 254 (459)
T ss_pred CCHHHcCEEEecCCccchh
Confidence 8899999999999988753
|
|
| >PRK12404 stage V sporulation protein AD; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.6e-08 Score=94.47 Aligned_cols=175 Identities=21% Similarity=0.221 Sum_probs=113.8
Q ss_pred HHHHHHHHHHHHHHHcCCCCccccccccccceEEEeecCCCccchHHHHHHHHHhCCCCcCCcCcchhhhhhhHHHHhhh
Q 012221 126 CLRYCIVAGKKALEDADLGADISKKIDKERAGVLVGTGMGGLTVFSDGVQALIEKGHRKITPFFIPYAITNMGSALLAID 205 (468)
Q Consensus 126 ~~~l~l~a~~~AL~dAgl~~~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~ia~~ 205 (468)
...|+.+|+++||++||+ +++++| -+++|+..+. ...+..++..
T Consensus 54 E~~L~~EA~~~AL~kAGI---~~~DID----~i~vGdL~nQ-----------------------------~ipssfvar~ 97 (334)
T PRK12404 54 ERKLLEEACSRAIEKAKL---RKEDIQ----FFLAGDLMNQ-----------------------------ITPTSFAART 97 (334)
T ss_pred HHHHHHHHHHHHHHHcCC---CHHHCC----EEEEEecCCC-----------------------------cCcHHHHHHH
Confidence 457999999999999999 666776 5666764210 1113356666
Q ss_pred hCCCCcceeecccChHHHHHHHHHHHHHHhCCCCEEEEEeeccccchhhhhHhhhccccccCCCCCCCCCCCCCCCCCCe
Q 012221 206 LGFMGPNYSISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWDKDRDGF 285 (468)
Q Consensus 206 lgl~Gp~~~v~~acas~l~Al~~A~~~I~~G~~d~~lvgG~e~~~~p~~~~~~~~~~~l~~~~~~~~~~~rpfd~~~~G~ 285 (468)
||+ |.+.|.++|+++..||..|+.+|++|.+|.|||+...-.-+......| -.+ -+..||... .-+
T Consensus 98 LGI--P~~gV~gACSTg~eAL~lAa~~VaSG~Ad~VLavtsSH~~~aErqfR~-----P~e-----yG~Qrp~ta--qwT 163 (334)
T PRK12404 98 LGI--PYLGLFGACSTSMEGLALAALIVNSGGAKYVLTGASSHNAAVEKQFRY-----PTE-----YGGQKPPTA--QWT 163 (334)
T ss_pred hCC--CccceeecCHHHHHHHHHHHHHHHcCCCCEEEEEeCcccchhhhhccC-----ccc-----ccCcCCCcc--cEE
Confidence 774 779999999999999999999999999999999877653322221111 010 133455432 233
Q ss_pred eecceeEEEEecchhHHHhcCCceE----EEEEEEEEcCCCCCCCCCCCC----hHHHHHHHHHHHHHcCCCCCCcCEEE
Q 012221 286 VMGEGAGVLVMESLEHAMKRGAPII----AEYLGGAVNCDAYHMTDPRAD----GLGVSSCIESSLEDAGVSPEEVNYIN 357 (468)
Q Consensus 286 v~gEGaaavvL~~~~~A~~~g~~i~----a~i~g~~~~~d~~~~~~~~~~----~~~~~~~i~~al~~Agl~~~dId~v~ 357 (468)
|. |++++||.+.. .+.+|- ++|..++. .+|... ..+....|.+=|++.|.+|+|-|.|.
T Consensus 164 vT--gaga~~l~~~~----~~~~i~~~T~Gkv~D~g~-------~d~~nMGaaMAPAA~dti~~h~~d~~~~~~~yDlI~ 230 (334)
T PRK12404 164 VT--GAGAAILSKTG----DGPRVTSATIGRVVDMGL-------TDPFNMGGAMAPAAVDTIEAHLRDRQIDASYYDLIV 230 (334)
T ss_pred EE--ceEEEEEecCC----CCceEEEEEEEEEEecCC-------CCcccchhhhhHHHHHHHHHHHHHhCCChhhccEEE
Confidence 44 67788886531 122221 22333322 233322 33556679999999999999999999
Q ss_pred EccCCC
Q 012221 358 AHATST 363 (468)
Q Consensus 358 ~h~~gt 363 (468)
.-+-|.
T Consensus 231 TGDLg~ 236 (334)
T PRK12404 231 TGDLGH 236 (334)
T ss_pred EcchHH
Confidence 755443
|
|
| >PLN02932 3-ketoacyl-CoA synthase | Back alignment and domain information |
|---|
Probab=98.86 E-value=3.9e-08 Score=100.02 Aligned_cols=124 Identities=13% Similarity=0.122 Sum_probs=89.9
Q ss_pred CHHHHHHHHHHHHHHHHcCCCCccccccccccceEEEeecCCCccchHHHHHHHHHhCCCCcCCcCcchhhhhhhHHHHh
Q 012221 124 DDCLRYCIVAGKKALEDADLGADISKKIDKERAGVLVGTGMGGLTVFSDGVQALIEKGHRKITPFFIPYAITNMGSALLA 203 (468)
Q Consensus 124 d~~~~l~l~a~~~AL~dAgl~~~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~ia 203 (468)
+....++..|+++||+++|+ +++++| -+++.++.+. .....+.+|.
T Consensus 146 ~ea~~la~~Aa~~aL~~agi---~p~dId----~lIv~tst~~---------------------------~~Pslaa~V~ 191 (478)
T PLN02932 146 KETEEVIIGAVDNLFRNTGI---SPSDIG----ILVVNSSTFN---------------------------PTPSLSSILV 191 (478)
T ss_pred HHHHHHHHHHHHHHHHHcCC---CHHHCC----EEEEEccCCC---------------------------CCCcHHHHHH
Confidence 34668999999999999999 556665 4556654321 1223478889
Q ss_pred hhhCCCC--cceeec-ccChHHHHHHHHHHHHHHhCCCCEEEEEeeccccchhhhhHhhhccccccCCCCCCCCCCCCCC
Q 012221 204 IDLGFMG--PNYSIS-TACATSNYCFYAAANHIRRGEADLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWDK 280 (468)
Q Consensus 204 ~~lgl~G--p~~~v~-~acas~l~Al~~A~~~I~~G~~d~~lvgG~e~~~~p~~~~~~~~~~~l~~~~~~~~~~~rpfd~ 280 (468)
..+|++. .++.++ .||++++.+|..|.++|+.+....+||.++|. ++.....+ . .+ +.
T Consensus 192 ~~lGlr~~i~~fdL~gmGCSggl~aL~lA~~ll~~~~~~~aLVVstE~-~S~~~~~~---------------d-~r--~~ 252 (478)
T PLN02932 192 NKFKLRDNIKSLNLGGMGCSAGVIAIDAAKSLLQVHRNTYALVVSTEN-ITQNLYLG---------------N-NK--SM 252 (478)
T ss_pred HHhCCCCCceEEEeccchhhhHHHHHHHHHHHHHcCCCCeEEEEEEee-cccccCCC---------------c-ch--hh
Confidence 9999973 788898 89999999999999999999999999999997 22221110 0 00 00
Q ss_pred CCCCeeecceeEEEEecchh
Q 012221 281 DRDGFVMGEGAGVLVMESLE 300 (468)
Q Consensus 281 ~~~G~v~gEGaaavvL~~~~ 300 (468)
.-...++||||||+||+..+
T Consensus 253 l~t~~LFgDGAAAvlLs~~~ 272 (478)
T PLN02932 253 LVTNCLFRIGGAAILLSNRS 272 (478)
T ss_pred hccceeecccceEEEEeccc
Confidence 01346789999999999744
|
|
| >PLN02192 3-ketoacyl-CoA synthase | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.4e-07 Score=96.45 Aligned_cols=117 Identities=15% Similarity=0.149 Sum_probs=84.9
Q ss_pred HHHHHHHHHHHHHHHcCCCCccccccccccceEEEeecCCCccchHHHHHHHHHhCCCCcCCcCcchhhhhhhHHHHhhh
Q 012221 126 CLRYCIVAGKKALEDADLGADISKKIDKERAGVLVGTGMGGLTVFSDGVQALIEKGHRKITPFFIPYAITNMGSALLAID 205 (468)
Q Consensus 126 ~~~l~l~a~~~AL~dAgl~~~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~ia~~ 205 (468)
...+...|+++||+++|+ +++++| -+++.++ . .......+..|...
T Consensus 176 a~~~~~~Aa~~aL~kaGi---~p~DID----iLIv~~S-~--------------------------~~~~PSlaa~I~n~ 221 (511)
T PLN02192 176 AETVMFGAIDQLLAKTSV---KPKDIG----ILIVNCS-L--------------------------FNPTPSLSAMVINH 221 (511)
T ss_pred HHHHHHHHHHHHHHHcCC---CHHHCC----EEEEECC-C--------------------------CCCCchHHHHHHHH
Confidence 567888999999999999 556665 2444432 1 11122347788889
Q ss_pred hCCCC--cceeec-ccChHHHHHHHHHHHHHHhCCCCEEEEEeeccccchhhhhHhhhccccccCCCCCCCCCCCCCCCC
Q 012221 206 LGFMG--PNYSIS-TACATSNYCFYAAANHIRRGEADLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWDKDR 282 (468)
Q Consensus 206 lgl~G--p~~~v~-~acas~l~Al~~A~~~I~~G~~d~~lvgG~e~~~~p~~~~~~~~~~~l~~~~~~~~~~~rpfd~~~ 282 (468)
+|++. .++.++ .||++++.||..|.++|+.+....+||+++|.. +. .+. +..++
T Consensus 222 lGlr~~i~afdLsgmGCSggl~aLdlA~~lL~a~~~~~aLVVstE~~-S~-n~y---------------------~g~dr 278 (511)
T PLN02192 222 YKLRGNILSYNLGGMGCSAGLISIDLAKHLLQVHPNSYALVISMENI-TL-NWY---------------------FGNDR 278 (511)
T ss_pred hCCCCCceEEEcccchhhhHHHHHHHHHHHHHcCCCCeEEEEEEEec-cc-cCC---------------------CCCCH
Confidence 99984 788998 599999999999999999999999999999973 21 110 00111
Q ss_pred C-C---eeecceeEEEEecch
Q 012221 283 D-G---FVMGEGAGVLVMESL 299 (468)
Q Consensus 283 ~-G---~v~gEGaaavvL~~~ 299 (468)
. - .++||||||+||++.
T Consensus 279 s~lv~n~LFgDGAaAvLLs~~ 299 (511)
T PLN02192 279 SMLVSNCLFRMGGAAILLSNK 299 (511)
T ss_pred HHHhccccccccceEEEEecc
Confidence 1 1 368999999999874
|
|
| >TIGR01833 HMG-CoA-S_euk 3-hydroxy-3-methylglutaryl-CoA-synthase, eukaryotic clade | Back alignment and domain information |
|---|
Probab=98.75 E-value=5.2e-07 Score=91.52 Aligned_cols=162 Identities=17% Similarity=0.161 Sum_probs=101.3
Q ss_pred EEEEeeceeccCC-CCHHHHHHHHHcCCCCccccCCCCCCCCCCccccccCCCCCCCCCCccccccCCHHHHHHHHHHHH
Q 012221 58 VVITGMGLVSVFG-NDVDAYYNKLLDGESGITMIDRFDASKFPTRFGGQIRGFSAEGYIDGKNDRRLDDCLRYCIVAGKK 136 (468)
Q Consensus 58 V~ItG~g~~~p~g-~~~~~~~~~L~~G~~~i~~~~~~~~~~~~~~~~g~v~~~d~~~~i~~~~~~~~d~~~~l~l~a~~~ 136 (468)
|-|.|+|...|.- .+.+++.+.. |.+. .++ ..+...+... | ..+ -.....|++.|+++
T Consensus 2 vgI~~ig~y~P~~~v~~~eLa~~~--g~~~----~k~-~~GI~~rr~a----v-----~~~-----~Ed~~tma~~AA~~ 60 (454)
T TIGR01833 2 VGILALEIYFPSQYVDQAELEKYD--GVSA----GKY-TIGLGQTKMG----F-----CTD-----REDINSLCLTVVSK 60 (454)
T ss_pred cEEEEEEEeCCCeEEcHHHHHHhc--CCCH----HHh-eechhheecc----c-----CCC-----CCCHHHHHHHHHHH
Confidence 6799999999998 6777764431 2220 011 0111111000 0 001 12356799999999
Q ss_pred HHHHcCCCCccccccccccceEEEeecCCCccchHHHHHHHHHhCCCCcCCcCcchhhhhhhHHHHhhhh---CCCC-cc
Q 012221 137 ALEDADLGADISKKIDKERAGVLVGTGMGGLTVFSDGVQALIEKGHRKITPFFIPYAITNMGSALLAIDL---GFMG-PN 212 (468)
Q Consensus 137 AL~dAgl~~~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~ia~~l---gl~G-p~ 212 (468)
+|+++++ ++++|+ -|++|+..+... ....+..+...| |.+. .+
T Consensus 61 lL~~a~i---d~~~Id----~Liv~TeS~~d~--------------------------sps~a~~v~~lL~~lG~~~~~~ 107 (454)
T TIGR01833 61 LMERYNI---DYNQIG----RLEVGTETIIDK--------------------------SKSVKTVLMQLFEESGNTDVEG 107 (454)
T ss_pred HHHHcCC---CHHHCC----EEEEECCCCCCC--------------------------CCchHHHHHHHHHhcCCCCceE
Confidence 9999999 555665 467776533211 011244455544 4433 57
Q ss_pred eeecccChHHHHHHHHHHHHHHhCCC--CEEEEEeeccccchhhhhHhhhccccccCCCCCCCCCCCCCCCCCCeeecce
Q 012221 213 YSISTACATSNYCFYAAANHIRRGEA--DLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWDKDRDGFVMGEG 290 (468)
Q Consensus 213 ~~v~~acas~l~Al~~A~~~I~~G~~--d~~lvgG~e~~~~p~~~~~~~~~~~l~~~~~~~~~~~rpfd~~~~G~v~gEG 290 (468)
+.+..+|+++..||..|..+|++|.. +.+||++.|..... ....+ ...|+|
T Consensus 108 fDi~~AC~G~t~AL~~A~~~i~s~~~~~~~aLVV~sDia~y~-------------------~~~~~--------~t~GaG 160 (454)
T TIGR01833 108 IDTTNACYGGTAALFNAINWIESSSWDGRYALVVAGDIAVYA-------------------KGNAR--------PTGGAG 160 (454)
T ss_pred EeccccchhHHHHHHHHHHHHHcCCcCCCeEEEEEecccccc-------------------CCCee--------eccccc
Confidence 78999999999999999999999974 89999999961110 00011 145999
Q ss_pred eEEEEecchh
Q 012221 291 AGVLVMESLE 300 (468)
Q Consensus 291 aaavvL~~~~ 300 (468)
|+|+||++..
T Consensus 161 AvAmLv~~~~ 170 (454)
T TIGR01833 161 AVAMLIGPNA 170 (454)
T ss_pred eEEEEeccCc
Confidence 9999998643
|
Hydroxymethylglutaryl(HMG)-CoA synthase is the first step of isopentenyl pyrophosphate (IPP) biosynthesis via the mevalonate pathway. This pathway is found mainly in eukaryotes, but also in archaea and some bacteria. This model is specific for eukaryotes. |
| >COG3424 BcsA Predicted naringenin-chalcone synthase [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.1e-07 Score=88.27 Aligned_cols=193 Identities=19% Similarity=0.192 Sum_probs=128.8
Q ss_pred cCCHHHHHHHHHHHHHHHHcCCCCccccccccccceEEEeecCCCccchHHHHHHHHHhCCCCcCCcCcchhhhhhhHHH
Q 012221 122 RLDDCLRYCIVAGKKALEDADLGADISKKIDKERAGVLVGTGMGGLTVFSDGVQALIEKGHRKITPFFIPYAITNMGSAL 201 (468)
Q Consensus 122 ~~d~~~~l~l~a~~~AL~dAgl~~~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~ 201 (468)
.......+.+++.++||+.+++ .+.+++ .|++.++.| .....+-.+
T Consensus 72 fie~a~~l~v~a~r~aL~~~~l---~pedId----~vv~vtsTG---------------------------~~~Ps~dar 117 (356)
T COG3424 72 FIEEAVPLGVDALRRALDGSPL---RPEDID----AVVTVTSTG---------------------------LATPSLDAR 117 (356)
T ss_pred HHHHHHHHHHHHHHHHhccCCC---CHHHCc----EEEEEeecc---------------------------ccCCChhHH
Confidence 3445677899999999999999 555665 345444322 112223456
Q ss_pred HhhhhCCCCcce---eecccChHHHHHHHHHHHHHHhCCCCEEEEEeeccccchhhhhHhhhccccccCCCCCCCCCCCC
Q 012221 202 LAIDLGFMGPNY---SISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPW 278 (468)
Q Consensus 202 ia~~lgl~Gp~~---~v~~acas~l~Al~~A~~~I~~G~~d~~lvgG~e~~~~p~~~~~~~~~~~l~~~~~~~~~~~rpf 278 (468)
|...|||.-..- .-.-||+.+..++..|++.++..-...+|++.+|.+ ..++.. .
T Consensus 118 i~~~Lgl~p~~~Rvpv~glGCaaga~glara~~y~ra~P~~~vlvV~vELC--SLt~~~--------------------~ 175 (356)
T COG3424 118 IVGELGLSPDTRRVPVWGLGCAAGAAGLARARDYCRAAPDANVLVVCVELC--SLTYVF--------------------A 175 (356)
T ss_pred HHhhcCCCCccceeeeecchhhhhhhHHHHHHHHHhhCccceEEEEEeeee--eeeeec--------------------C
Confidence 777788864322 234689999999999999999999999999999963 322211 1
Q ss_pred CCCCCC----eeecceeEEEEecchhHHHhcC-Cc--eE----------EEEEEEEEcCCCCCCC----CCCCChHHHHH
Q 012221 279 DKDRDG----FVMGEGAGVLVMESLEHAMKRG-AP--II----------AEYLGGAVNCDAYHMT----DPRADGLGVSS 337 (468)
Q Consensus 279 d~~~~G----~v~gEGaaavvL~~~~~A~~~g-~~--i~----------a~i~g~~~~~d~~~~~----~~~~~~~~~~~ 337 (468)
|..... .++|||++|+|+.-...+.... .+ ++ -.+.||.++.+|.+.. .|..-...+..
T Consensus 176 d~t~s~lVgtaLF~DG~AA~vv~gd~~~~~~~~~~p~i~~s~StL~~dse~~Mgwdv~d~G~~~vlSrdlp~lIe~~l~~ 255 (356)
T COG3424 176 DDTKSNLVGTALFGDGAAAVVVSGDRRAEGKRPLRPDILDSFSTLYPDSEDIMGWDVGDQGLKVVLSRDLPNLIESYLAP 255 (356)
T ss_pred CCCcccceeeeeecCCeeEEEEeccccccccCCCCceecccccccCCccccccceeecCCcEEEEEcCchhHHHHHHhhh
Confidence 111112 3589999999998633222111 11 11 2357777777776432 23223345666
Q ss_pred HHHHHHHHcCCCCCCcCEEEEccCCCccCCHHH
Q 012221 338 CIESSLEDAGVSPEEVNYINAHATSTLAGDLAE 370 (468)
Q Consensus 338 ~i~~al~~Agl~~~dId~v~~h~~gt~~~D~~E 370 (468)
.+...|...+++.+||+.+.+|--|-+.-|..|
T Consensus 256 ~V~~fL~~~~ls~~dI~~w~~HPGG~KVida~~ 288 (356)
T COG3424 256 NVTTFLATHGLSIEDIEAWVVHPGGPKVIDAYE 288 (356)
T ss_pred hHHHHHHHcCCchhhhceeeeCCCCchHHHHHH
Confidence 789999999999999999999988888766654
|
|
| >PLN00415 3-ketoacyl-CoA synthase | Back alignment and domain information |
|---|
Probab=98.45 E-value=4.1e-06 Score=84.47 Aligned_cols=186 Identities=11% Similarity=0.089 Sum_probs=107.0
Q ss_pred CCcEEEEeeceeccCC---CCHHHHHHHHHcCCCCccccC-CC-----CCCCCCCccccccCCCCCCCCCCcccccc---
Q 012221 55 KKRVVITGMGLVSVFG---NDVDAYYNKLLDGESGITMID-RF-----DASKFPTRFGGQIRGFSAEGYIDGKNDRR--- 122 (468)
Q Consensus 55 ~~~V~ItG~g~~~p~g---~~~~~~~~~L~~G~~~i~~~~-~~-----~~~~~~~~~~g~v~~~d~~~~i~~~~~~~--- 122 (468)
.++|+.+-+.|.-|.- .+.+.|.+..+.- ..+.+-. +| ..++++... +-++..+..+....
T Consensus 57 ~~~vylvd~~c~~p~~~~~~~~~~~~~~~~~~-~~~~~~s~~F~~~i~~rSGlg~et------~~p~~~~~~~~~~~~~~ 129 (466)
T PLN00415 57 SKPVYLVDFSCHQPTDSCKISSETFFNMAKGA-QLYTEETIQFMTRILNRSGLGDDT------YSPRCMLTSPPTPSMYE 129 (466)
T ss_pred CCcEEEEeeeeecCCccccccHHHHHHHHHHc-CCCCHHHHHHHHHHHHHcCCCCCe------eeCCccccCCCCCChhh
Confidence 4579999999999877 4667777766532 1111100 00 011111100 11111111111111
Q ss_pred CCHHHHHHHH-HHHHHHHHcCCCCccccccccccceEEEeecCCCccchHHHHHHHHHhCCCCcCCcCcchhhhhhhHHH
Q 012221 123 LDDCLRYCIV-AGKKALEDADLGADISKKIDKERAGVLVGTGMGGLTVFSDGVQALIEKGHRKITPFFIPYAITNMGSAL 201 (468)
Q Consensus 123 ~d~~~~l~l~-a~~~AL~dAgl~~~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~ 201 (468)
-.....+++. |+++||+++|+ +++++| -+++.++ +. ......+.+
T Consensus 130 ~~~e~em~i~~A~~~aL~~aGi---~p~dID----~LIvs~T-~~--------------------------~~~Pslaa~ 175 (466)
T PLN00415 130 ARHESELVIFGALNSLFKKTGI---EPREVG----IFIVNCS-LF--------------------------NPNPSLSSM 175 (466)
T ss_pred hHHHHHHHHHHHHHHHHHHcCC---CHHHCC----EEEEECc-CC--------------------------CCCchHHHH
Confidence 2234456655 77788899999 556665 2333221 10 011223677
Q ss_pred HhhhhCCCC--cceeecc-cChHHHHHHHHHHHHHHhCCCCEEEEEeeccccchhhhhHhhhccccccCCCCCCCCCCCC
Q 012221 202 LAIDLGFMG--PNYSIST-ACATSNYCFYAAANHIRRGEADLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPW 278 (468)
Q Consensus 202 ia~~lgl~G--p~~~v~~-acas~l~Al~~A~~~I~~G~~d~~lvgG~e~~~~p~~~~~~~~~~~l~~~~~~~~~~~rpf 278 (468)
+...+|++. ..+.+.. +|++++.+|..|.++++++....+||.++|.+ +...+.+.+....
T Consensus 176 l~~~LGLr~~v~~~dL~gmGCsggv~aL~lA~~ll~a~~~~~aLVVs~E~~-S~~~~~~~dr~~l--------------- 239 (466)
T PLN00415 176 IVNRYKLKTDVKTYNLSGMGCSAGAISVDLATNLLKANPNTYAVIVSTENM-TLSMYRGNDRSML--------------- 239 (466)
T ss_pred HHHHhCCCCCceEEEeccccchHHHHHHHHHHHHHHhCCCCEEEEEEEecc-cccccCCCcHhHh---------------
Confidence 888899972 5677887 99999999999999999999999999999972 2211000000000
Q ss_pred CCCCCCeeecceeEEEEecchh
Q 012221 279 DKDRDGFVMGEGAGVLVMESLE 300 (468)
Q Consensus 279 d~~~~G~v~gEGaaavvL~~~~ 300 (468)
-...++||||||+||+...
T Consensus 240 ---v~n~LFgDGAAAvlLs~~~ 258 (466)
T PLN00415 240 ---VPNCLFRVGGAAVMLSNRS 258 (466)
T ss_pred ---ccceeecccceEEEEecCc
Confidence 0124789999999999753
|
|
| >PF08392 FAE1_CUT1_RppA: FAE1/Type III polyketide synthase-like protein; InterPro: IPR013601 This domain is found in proteins that are described as 3-ketoacyl-CoA synthases, type III polyketide synthases, fatty acid elongases and fatty acid condensing enzymes, and are found in both prokaryotic and eukaryotic (mainly plant) species | Back alignment and domain information |
|---|
Probab=98.36 E-value=3.7e-06 Score=79.22 Aligned_cols=188 Identities=12% Similarity=0.065 Sum_probs=115.9
Q ss_pred CCcEEEEeeceeccCC---CCHHHHHHHHHcCCCCcccc-----CC-CCCCCCCCccccccCCCCCCCC-CCcc--cccc
Q 012221 55 KKRVVITGMGLVSVFG---NDVDAYYNKLLDGESGITMI-----DR-FDASKFPTRFGGQIRGFSAEGY-IDGK--NDRR 122 (468)
Q Consensus 55 ~~~V~ItG~g~~~p~g---~~~~~~~~~L~~G~~~i~~~-----~~-~~~~~~~~~~~g~v~~~d~~~~-i~~~--~~~~ 122 (468)
.++|+++-+.|.-|.- .+.++|++..+.-.. +.+- .+ +..+++..+. . +++..+ +++. ..+.
T Consensus 6 ~r~VYLvDfac~kP~~~~~v~~~~~~e~~~~~~~-f~~~sl~F~~kIlerSGlG~eT--y---~P~~~~~~p~~~s~~~a 79 (290)
T PF08392_consen 6 PRPVYLVDFACYKPPDELRVSREEFIEHARRCGR-FDEESLDFQRKILERSGLGDET--Y---LPPALHEIPPDPSLAAA 79 (290)
T ss_pred CCCEEEEeeeecCCCcccccCHHHHHHHHHhccc-CChhHHHHHHHHHHhcCCCccc--c---CCcccccCCCcccHHHH
Confidence 3579999999999987 477888887654321 1110 00 0111111000 0 111111 2221 1112
Q ss_pred CCHHHHHHHHHHHHHHHHcCCCCccccccccccceEEEeecCCCccchHHHHHHHHHhCCCCcCCcCcchhhhhhhHHHH
Q 012221 123 LDDCLRYCIVAGKKALEDADLGADISKKIDKERAGVLVGTGMGGLTVFSDGVQALIEKGHRKITPFFIPYAITNMGSALL 202 (468)
Q Consensus 123 ~d~~~~l~l~a~~~AL~dAgl~~~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~i 202 (468)
.+....++..++.++|+++|+ .++++| .+++.++.+. ....+++.|
T Consensus 80 ~~Eae~v~f~av~~LL~ktgv---~p~dId----iLVvncs~f~---------------------------ptPSLsamI 125 (290)
T PF08392_consen 80 REEAEMVIFGAVDDLLAKTGV---KPSDID----ILVVNCSLFN---------------------------PTPSLSAMI 125 (290)
T ss_pred HHHHHHHHHHHHHHHHHHcCC---CHHHCC----EEEEECcCCC---------------------------cCCcHHHHH
Confidence 233455777899999999999 555665 4555554321 112347778
Q ss_pred hhhhCCCCccee--e-cccChHHHHHHHHHHHHHHhCCCCEEEEEeeccccchhhhhHhhhccccccCCCCCCCCCCCCC
Q 012221 203 AIDLGFMGPNYS--I-STACATSNYCFYAAANHIRRGEADLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWD 279 (468)
Q Consensus 203 a~~lgl~Gp~~~--v-~~acas~l~Al~~A~~~I~~G~~d~~lvgG~e~~~~p~~~~~~~~~~~l~~~~~~~~~~~rpfd 279 (468)
...||++.-..+ + .-||++|+.+|.+|.++++...-..+||..+|. +++..+.+-++...++
T Consensus 126 vnr~~mr~di~~~nLsGMGCsAgliai~lA~~lL~~~p~~~ALVVstE~-~s~~~Y~G~~rsmlv~-------------- 190 (290)
T PF08392_consen 126 VNRYGMRSDIKSYNLSGMGCSAGLIAIDLAKDLLQAHPNSYALVVSTEN-ISANWYRGNDRSMLVS-------------- 190 (290)
T ss_pred HHHhCCCcCeeeecccCCcchhhHHHHHHHHHHHHhCCCcEEEEEEEee-cccccccCCcHHHhhc--------------
Confidence 888999874443 3 357999999999999999999989999999997 4544444433333333
Q ss_pred CCCCCeeecceeEEEEecchhH
Q 012221 280 KDRDGFVMGEGAGVLVMESLEH 301 (468)
Q Consensus 280 ~~~~G~v~gEGaaavvL~~~~~ 301 (468)
..++.+|++|++|.+...
T Consensus 191 ----NcLFr~GgAAvLLSn~~~ 208 (290)
T PF08392_consen 191 ----NCLFRMGGAAVLLSNKPS 208 (290)
T ss_pred ----cccccCCceeEEeecCcc
Confidence 236789999999987654
|
The region contains the active site residues, as well as motifs involved in substrate binding []. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0006633 fatty acid biosynthetic process, 0016020 membrane |
| >PF08545 ACP_syn_III: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III; InterPro: IPR013751 Fatty acid synthesis (FAS) is a vital aspect of cellular physiology which can occur by two distinct pathways | Back alignment and domain information |
|---|
Probab=98.20 E-value=8.1e-07 Score=68.21 Aligned_cols=64 Identities=27% Similarity=0.406 Sum_probs=46.9
Q ss_pred eeecccChHHHHHHHHHHHHHHhCCCCEEEEEeeccccchhhhhHhhhccccccCCCCCCCCCCCCCCCCCCeeecceeE
Q 012221 213 YSISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWDKDRDGFVMGEGAG 292 (468)
Q Consensus 213 ~~v~~acas~l~Al~~A~~~I~~G~~d~~lvgG~e~~~~p~~~~~~~~~~~l~~~~~~~~~~~rpfd~~~~G~v~gEGaa 292 (468)
+.|..+|++++.||+.|..+|++|.++.+|+.+.|........ ......+++||||+
T Consensus 1 fDi~~~C~g~~~al~~A~~~i~~g~~~~~Lvv~~d~~s~~~~~-----------------------~~~~~~~~~gDgAa 57 (80)
T PF08545_consen 1 FDINQACAGFLYALDVAAALIASGRAKNALVVGGDRLSRIVDR-----------------------TDRQTAFIFGDGAA 57 (80)
T ss_dssp EEEE-GGGHHHHHHHHHHHHHHTTS-SEEEEEEEEEGGGGSHT-----------------------THHHHHTTB-EEEE
T ss_pred CcccccchHHHHHHHHHHHHHhhccCCEEEEEeeccccccccc-----------------------cccCcceeecchhe
Confidence 3578899999999999999999999999999999973221100 00122347999999
Q ss_pred EEEecch
Q 012221 293 VLVMESL 299 (468)
Q Consensus 293 avvL~~~ 299 (468)
|+||++.
T Consensus 58 A~vl~~~ 64 (80)
T PF08545_consen 58 AVVLSRD 64 (80)
T ss_dssp EEEEEEE
T ss_pred EEEEEec
Confidence 9999985
|
The FAS I pathway, which generally only produces palmitate, is found in eukaryotes and is performed either by a single polypeptide which contains all the reaction centres needed to form a fatty acid, or by two polypeptides which interact to form a multifunctional complex. The FAS II pathway, which is capable of producing many different fatty acids, is found in mitochondria, bacteria, plants and parasites, and is performed by many distinct proteins, each of which catalyses a single step within the pathway. The large diversity of products generated by this pathway is possible because the acyl carrier protein (ACP) intermediates are diffusible entities that can be diverted into other biosynthetic pathways []. 3-Oxoacyl-[acyl carrier protein (ACP)] synthase III catalyses the first condensation step within the FAS II pathway, using acetyl-CoA as the primer and malonyl-ACP as the acceptor, as shown below. |
| >PF00195 Chal_sti_synt_N: Chalcone and stilbene synthases, N-terminal domain; InterPro: IPR001099 Synonym(s): Chalcone synthase, Flavonone synthase, 6'-deoxychalcone synthase Naringenin-chalcone synthases (2 | Back alignment and domain information |
|---|
Probab=98.15 E-value=1.3e-05 Score=73.46 Aligned_cols=122 Identities=18% Similarity=0.147 Sum_probs=79.1
Q ss_pred CCHHHHHHHHHHHHHHHHcCCCCccccccccccceEEEeecCCCccchHHHHHHHHHhCCCCcCCcCcchhhhhhhHHHH
Q 012221 123 LDDCLRYCIVAGKKALEDADLGADISKKIDKERAGVLVGTGMGGLTVFSDGVQALIEKGHRKITPFFIPYAITNMGSALL 202 (468)
Q Consensus 123 ~d~~~~l~l~a~~~AL~dAgl~~~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~i 202 (468)
..-...|+.+|+++||+++|+ ++++++ .+++-++.|- ....+-.++
T Consensus 97 ~~~a~~L~~~Aa~~AL~~~g~---~~~dIt----hlv~vs~TG~---------------------------~~PglD~~l 142 (226)
T PF00195_consen 97 AEEAPPLAEEAARKALAEAGL---DPSDIT----HLVTVSCTGI---------------------------AAPGLDARL 142 (226)
T ss_dssp HHHHHHHHHHHHHHHHHHHTS----GGGEC----EEEEEESSSS---------------------------ECS-HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCC---CCcccc----eEEEEecCCc---------------------------CCCchhHHH
Confidence 344567899999999999999 556665 4665554332 122235567
Q ss_pred hhhhCCCCcc---eeecccChHHHHHHHHHHHHHHhCCCCEEEEEeeccccchhhhhH---hhhccccccCCCCCCCCCC
Q 012221 203 AIDLGFMGPN---YSISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAIIPIGLGG---FVACRALSQRNDDPQTASR 276 (468)
Q Consensus 203 a~~lgl~Gp~---~~v~~acas~l~Al~~A~~~I~~G~~d~~lvgG~e~~~~p~~~~~---~~~~~~l~~~~~~~~~~~r 276 (468)
...|||+... ....-||.+|..+|..|.+..++..-..||+..+|.+. ..+.. ......++
T Consensus 143 ~~~LgL~~~v~R~~i~~~GC~gg~~~L~~A~~~~~~~p~a~VLvv~vElcs--l~~~~~~~~~~~~lv~----------- 209 (226)
T PF00195_consen 143 INRLGLRPDVQRTPIFGMGCAGGAAGLRRAKDIARANPGARVLVVCVELCS--LHFQAPNDDSLDNLVA----------- 209 (226)
T ss_dssp HHHHT--TTSEEEEEES-GGGHHHHHHHHHHHHHHHSTT-EEEEEEEEEGG--GTHHHCCTTSHHHHHH-----------
T ss_pred HhcCCCCCCcEEEEEeccchhhHHHHHHHHHHHHhCCccceEEEEEEEeeE--EEEecCCcccHHHHhH-----------
Confidence 7889987533 34567999999999999999999999999999999632 22211 00111111
Q ss_pred CCCCCCCCeeecceeEEEEecc
Q 012221 277 PWDKDRDGFVMGEGAGVLVMES 298 (468)
Q Consensus 277 pfd~~~~G~v~gEGaaavvL~~ 298 (468)
..++||||+|+||..
T Consensus 210 -------~aLFgDGaAA~vv~~ 224 (226)
T PF00195_consen 210 -------NALFGDGAAAVVVGA 224 (226)
T ss_dssp -------HHHB-EEEEEEEEES
T ss_pred -------HhhhcCCceEEEEcc
Confidence 125899999999975
|
3.1.74 from EC) and stilbene synthases (STS) (formerly known as resveratrol synthases) are related plant enzymes. CHS is an important enzyme in flavanoid biosynthesis and STS is a key enzyme in stilbene-type phyloalexin biosynthesis. Both enzymes catalyse the addition of three molecules of malonyl-CoA to a starter CoA ester (a typical example is 4-coumaroyl-CoA), producing either a chalcone (with CHS) or stilbene (with STS) []. These enzymes have a conserved cysteine residue, located in the central section of the protein sequence, which is essential for the catalytic activity of both enzymes and probably represents the binding site for the 4-coumaryl-CoA group [].; GO: 0016746 transferase activity, transferring acyl groups, 0009058 biosynthetic process; PDB: 3EUO_B 3EUT_C 3EUQ_D 3E1H_A 3AWK_A 3AWJ_A 2H84_A 3A5S_A 3A5Q_B 3A5R_A .... |
| >PF07451 SpoVAD: Stage V sporulation protein AD (SpoVAD); InterPro: IPR010894 This family contains the bacterial stage V sporulation protein AD (SpoVAD), which is approximately 340 residues long | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.00073 Score=63.58 Aligned_cols=188 Identities=22% Similarity=0.241 Sum_probs=100.4
Q ss_pred HHHHHHHHHHHHHHHcCCCCccccccccccceEEEeecCCCccchHHHHHHHHHhCCCCcCCcCcchhhhhhhHHHHhhh
Q 012221 126 CLRYCIVAGKKALEDADLGADISKKIDKERAGVLVGTGMGGLTVFSDGVQALIEKGHRKITPFFIPYAITNMGSALLAID 205 (468)
Q Consensus 126 ~~~l~l~a~~~AL~dAgl~~~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~ia~~ 205 (468)
..+|..+|+..||+++++ .+++++ .+++-..-.+ ...+...+..
T Consensus 51 E~~m~~~A~~~al~Ka~l---~~~dId-----~~~aGDLlnQ----------------------------~i~s~f~ar~ 94 (329)
T PF07451_consen 51 ESKMQKEAVELALKKAGL---KKEDID-----YLFAGDLLNQ----------------------------IISSSFAARD 94 (329)
T ss_dssp HHHHHHHHHHHHHHHTT-----GGG-S-----EEEEEETTCC----------------------------CCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCC---CHHHCe-----EEEehhhhhh----------------------------hHHHHHHHHh
Confidence 567889999999999999 555554 6665421110 1123344555
Q ss_pred hCCCCcceeecccChHHHHHHHHHHHHHHhCCCCEEEEEeeccccchhhhhHhhhccccccCCCCCCCCCCCCCCCCCCe
Q 012221 206 LGFMGPNYSISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWDKDRDGF 285 (468)
Q Consensus 206 lgl~Gp~~~v~~acas~l~Al~~A~~~I~~G~~d~~lvgG~e~~~~p~~~~~~~~~~~l~~~~~~~~~~~rpfd~~~~G~ 285 (468)
|++ |-+-+..+|++...+|.+|..+|..|-+|.+|++...-..+......|- +. -+..||-.. .
T Consensus 95 l~i--Pf~GlygACST~~e~l~laa~~vdgg~a~~vla~tSSH~~tAERQfR~P----~E------yG~Qrp~tA--q-- 158 (329)
T PF07451_consen 95 LGI--PFLGLYGACSTMMESLALAAMLVDGGFADYVLAATSSHFATAERQFRFP----TE------YGGQRPPTA--Q-- 158 (329)
T ss_dssp HT----EEEB--CCCHHHHHHHHHHHHHHTTS-SEEEEEEEE-CCHHHHHT-------GG------GT----TT------
T ss_pred cCC--CccchhhHHHHHHHHHHHHHHHHhCCCcceEEEEeccccchhhhhccCc----hh------ccCCCCCcc--c--
Confidence 655 7788999999999999999999999999999998876533333222211 11 123344322 1
Q ss_pred eecceeEEEEecchhHHHhcCCceEEEEEEEEE--cCCCCCCCCCCCChH----HHHHHHHHHHHHcCCCCCCcCEEEEc
Q 012221 286 VMGEGAGVLVMESLEHAMKRGAPIIAEYLGGAV--NCDAYHMTDPRADGL----GVSSCIESSLEDAGVSPEEVNYINAH 359 (468)
Q Consensus 286 v~gEGaaavvL~~~~~A~~~g~~i~a~i~g~~~--~~d~~~~~~~~~~~~----~~~~~i~~al~~Agl~~~dId~v~~h 359 (468)
..-=|++++||.+.. ..++ |.+..+ .-| +.+.+|...|. +....|.+=|++.|.+|+|-|.|..-
T Consensus 159 wTVTGaGa~il~~~~------~~p~--It~~T~GkVvD-~G~~D~~nMGaAMAPAA~dTI~~h~~D~g~~p~dYDlIvTG 229 (329)
T PF07451_consen 159 WTVTGAGAAILSKEG------SGPR--ITHATIGKVVD-MGIKDPNNMGAAMAPAAADTIEQHFKDTGRSPDDYDLIVTG 229 (329)
T ss_dssp EE--EEEEEEEESS--------SEE--EEEEE----B--SS---TT-HHHHHHHHHHHHHHHHHHHCT--GGG-SEEEES
T ss_pred EEEeceEEEEEecCC------CCcE--EEEEEEEEEEE-cCCCCcccchhhHhHHHHHHHHHHHHHhCCChhhcCeEEec
Confidence 333478889998643 2333 333222 222 23344544443 34456888899999999999999965
Q ss_pred cCCCccCCHHHHHHHHHHhc
Q 012221 360 ATSTLAGDLAEINAIKKVFK 379 (468)
Q Consensus 360 ~~gt~~~D~~E~~al~~~f~ 379 (468)
+-|. +-..-+.+++.
T Consensus 230 DLg~-----vG~~il~~Ll~ 244 (329)
T PF07451_consen 230 DLGK-----VGRKILRDLLK 244 (329)
T ss_dssp S-HH-----HHHHHHHHHHH
T ss_pred chHH-----HHHHHHHHHHH
Confidence 4332 33444555544
|
This is one of six proteins encoded by the spoVA operon, which is transcribed exclusively in the forespore at about the time of dipicolinic acid (DPA) synthesis in the mother cell. The functions of the proteins encoded by the spoVA operon are unknown, but it has been suggested they are involved in DPA transport during sporulation [].; PDB: 3LMA_D 3LM6_A. |
| >PF01154 HMG_CoA_synt_N: Hydroxymethylglutaryl-coenzyme A synthase N terminal; InterPro: IPR013528 Synonym(s): 3-hydroxy-3-methylglutaryl-coenzyme A synthase, HMG-CoA synthase | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00082 Score=58.70 Aligned_cols=139 Identities=17% Similarity=0.159 Sum_probs=84.3
Q ss_pred CcEEEEeeceeccCC-CCHHHHHHHHHcCCCCccccCCCCCCCCCCccccccCCCCCCCCCCccccccCCHHHHHHHHHH
Q 012221 56 KRVVITGMGLVSVFG-NDVDAYYNKLLDGESGITMIDRFDASKFPTRFGGQIRGFSAEGYIDGKNDRRLDDCLRYCIVAG 134 (468)
Q Consensus 56 ~~V~ItG~g~~~p~g-~~~~~~~~~L~~G~~~i~~~~~~~~~~~~~~~~g~v~~~d~~~~i~~~~~~~~d~~~~l~l~a~ 134 (468)
++|-|.+|+..+|.- .+.+++.+. .|.+.- +|.. ++.....+ | .++. ....-|++.|+
T Consensus 3 ~~VGI~~i~~y~p~~~v~~~~La~~--~g~d~~----K~~~-glgq~~~a----v-----~~~~-----ED~vTmA~nAa 61 (174)
T PF01154_consen 3 QNVGIDAIEFYIPRYYVDQEELAEA--RGVDPG----KYTI-GLGQEKMA----V-----PPPD-----EDIVTMAANAA 61 (174)
T ss_dssp SSEEEEEEEEE-ESEEEEHHHHHHH--TTS-TC----HHHT-TT--SEEE----E-------TT-----S-HHHHHHHHH
T ss_pred ccccEeEEEEecCceEecHHHHHHH--hCCCHH----Hhhh-hcCeeEEE----e-----CCCc-----ccHHHHHHHHH
Confidence 579999999999998 688876543 232211 1110 11000000 0 1111 12467899999
Q ss_pred HHHHHHcCCCCccccccccccceEEEeecCCCccchHHHHHHHHHhCCCCcCCcCcchhhhhhhHHHHhhhhCCCCc---
Q 012221 135 KKALEDADLGADISKKIDKERAGVLVGTGMGGLTVFSDGVQALIEKGHRKITPFFIPYAITNMGSALLAIDLGFMGP--- 211 (468)
Q Consensus 135 ~~AL~dAgl~~~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~ia~~lgl~Gp--- 211 (468)
+.+|++.++ ++++++ -+++||..+- +... .++..+...||+.|.
T Consensus 62 ~~ll~~~~i---d~~~Ig----~l~vgTES~v----------------D~sK----------s~~t~v~~ll~~s~~~~~ 108 (174)
T PF01154_consen 62 KPLLDRYNI---DPDDIG----RLIVGTESGV----------------DKSK----------SISTYVHQLLGLSGNPDC 108 (174)
T ss_dssp HTTHHHHT----HHHHEE----EEEEE-SS-S----------------BSSS-----------HHHHHHHHTTTTT-SSS
T ss_pred HHHHHHcCC---CHHHcc----EEEEeccccc----------------cccc----------cHHHHHHHHhCcCCCCce
Confidence 999999877 444443 2667764221 1111 135667777888552
Q ss_pred -ceeecccChHHHHHHHHHHHHHHhCCCC--EEEEEeecc
Q 012221 212 -NYSISTACATSNYCFYAAANHIRRGEAD--LMLAGGTEA 248 (468)
Q Consensus 212 -~~~v~~acas~l~Al~~A~~~I~~G~~d--~~lvgG~e~ 248 (468)
.+-+-.+|-+|..||..|+.+|+++..| .+||.+.|.
T Consensus 109 ~~~e~k~ACygGTaAL~~a~~~v~s~~~~g~~aLVVasDi 148 (174)
T PF01154_consen 109 RGVEMKQACYGGTAALQNAVNWVASSPWDGRKALVVASDI 148 (174)
T ss_dssp EEEEEESGGGHHHHHHHHHHHHHCSTTSTTEEEEEEEEEE
T ss_pred eeeehhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccc
Confidence 2456789999999999999999998765 899999996
|
Hydroxymethylglutaryl-CoA synthase (2.3.3.10 from EC) catalyses the condensation of acetyl-CoA with acetoacetyl-CoA to produce HMG-CoA and CoA, the second reaction in the mevalonate-dependent isoprenoid biosynthesis pathway. HMG-CoA synthase contains an important catalytic cysteine residue that acts as a nucleophile in the first step of the reaction: the acetylation of the enzyme by acetyl-CoA (its first substrate) to produce an acetyl-enzyme thioester, releasing the reduced coenzyme A. The subsequent nucleophilic attack on acetoacetyl-CoA (its second substrate) leads to the formation of HMG-CoA []. HMG-CoA synthase occurs in eukaryotes, archaea and certain bacteria []. In vertebrates, there are two isozymes located in different subcellular compartments: a cytosolic form that is the starting point of the mevalonate pathway (leads to cholesterol and other sterolic and isoprenoid compounds), and a mitochondrial form responsible for ketone body biosynthesis. HMG-CoA is also found in other eukaryotes such as insects, plants and fungi []. In bacteria, isoprenoid precursors are generally synthesised via an alternative, non-mevalonate pathway, however a number of Gram-positive pathogens utilise a mevalonate pathway involving HMG-CoA synthase that is parallel to that found in eukaryotes [, ]. This entry represents the N-terminal domain of HMG-CoA synthase enzymes from both eukaryotes and prokaryotes.; GO: 0004421 hydroxymethylglutaryl-CoA synthase activity, 0008299 isoprenoid biosynthetic process; PDB: 1X9E_B 2HDB_B 2WYA_C 2P8U_A 3V4X_A 3V4N_C 3LEH_A 1TXT_D 1TVZ_A 2FA0_A .... |
| >PF08541 ACP_syn_III_C: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal ; InterPro: IPR013747 This domain is found on 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III 2 | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0023 Score=50.14 Aligned_cols=89 Identities=19% Similarity=0.269 Sum_probs=53.6
Q ss_pred HHHcCCCCCCcCEEEEccCCCccCCHHHHHHHHHHhccCCCceeeecccccCccccchhHHHHHHHHHHHhcCCcCCCCC
Q 012221 343 LEDAGVSPEEVNYINAHATSTLAGDLAEINAIKKVFKNTTGIKINATKSMIGHCLGAAGGLEAIATVKAITTGWLHPSIN 422 (468)
Q Consensus 343 l~~Agl~~~dId~v~~h~~gt~~~D~~E~~al~~~f~~~~~~~v~s~k~~~Gh~~~AsG~~~l~~~~~~l~~~~~pp~~~ 422 (468)
|+++|++++|||++..|..+.+. .+.+.+.++-... .+...-..+||+.+|+-.+.+. ..++.+.+.
T Consensus 1 L~~~g~~~~did~~i~hq~~~~~-----~~~~~~~lgi~~~-~~~~~~~~~Gn~~sa~~~~~L~---~~~~~g~~~---- 67 (90)
T PF08541_consen 1 LERAGLSPDDIDHFIPHQASKKI-----LDSIAKRLGIPPE-RFPDNLAEYGNTGSASIPINLA---DALEEGRIK---- 67 (90)
T ss_dssp HHHTT--GGGESEEEE-SSSHHH-----HHHHHHHHTS-GG-GBE-THHHH-B-GGGHHHHHHH---HHHHTTSSC----
T ss_pred CccccCCHHHCCEEEeCCCCHHH-----HHHHHHHcCCcHH-HHHHHHhccCcchhhhHHHHHH---HHHHcCCCC----
Confidence 68999999999999999876543 2334555543212 2222337789999887665554 445555331
Q ss_pred CCCCCCCCCcccccccccccCccEEEEEcccccCeeeEEEEe
Q 012221 423 QFNPEPSVEFDTVANKKQQHEVNVAISNSFGFGGHNSVVAFS 464 (468)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~g~gG~n~~~vl~ 464 (468)
+-+.++.-++|.|.+-++++++
T Consensus 68 --------------------~Gd~vl~~~~G~G~~~~~~~~~ 89 (90)
T PF08541_consen 68 --------------------PGDRVLLVGFGAGFSWGAAVLR 89 (90)
T ss_dssp --------------------TTEEEEEEEEETTTEEEEEEEE
T ss_pred --------------------CCCEEEEEEEEhhheeEEEEEE
Confidence 2345666799999888888875
|
3.1.41 from EC, the enzyme responsible for initiating the chain of reactions of the fatty acid synthase in plants and bacteria. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0008610 lipid biosynthetic process; PDB: 3IL3_A 1ZOW_C 3GWE_B 3GWA_B 1UB7_B 3LED_B 2EBD_A 1HNJ_A 2EFT_B 1HN9_B .... |
| >KOG1393 consensus Hydroxymethylglutaryl-CoA synthase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.57 E-value=7.1 Score=38.40 Aligned_cols=59 Identities=20% Similarity=0.347 Sum_probs=42.3
Q ss_pred eeecccChHHHHHHHHHHHHHHhCCCC--EEEEEeeccccchhhhhHhhhccccccCCCCCCCCCCCCCCCCCCeeecce
Q 012221 213 YSISTACATSNYCFYAAANHIRRGEAD--LMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWDKDRDGFVMGEG 290 (468)
Q Consensus 213 ~~v~~acas~l~Al~~A~~~I~~G~~d--~~lvgG~e~~~~p~~~~~~~~~~~l~~~~~~~~~~~rpfd~~~~G~v~gEG 290 (468)
+...++|-+|..||..|..||.+..-| .+||+..|..+- +++.+|| .-|-|
T Consensus 118 iDttnACYGGtaALfnavnWiESssWDGr~aivV~gDIAvY-------------------~~G~aRp--------TGGAg 170 (462)
T KOG1393|consen 118 IDTTNACYGGTAALFNAVNWIESSSWDGRYAIVVCGDIAVY-------------------AKGNARP--------TGGAG 170 (462)
T ss_pred ccccccccccHHHHHHHhhhhhhcccCCceeEEEEeeEEEe-------------------cCCCCCC--------CCCcc
Confidence 456689999999999999999865433 455555564211 2466787 44678
Q ss_pred eEEEEecc
Q 012221 291 AGVLVMES 298 (468)
Q Consensus 291 aaavvL~~ 298 (468)
|.|+++.+
T Consensus 171 AVAmLIgP 178 (462)
T KOG1393|consen 171 AVAMLIGP 178 (462)
T ss_pred eEEEEEcC
Confidence 88999986
|
|
| >PRK08170 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=87.24 E-value=3.5 Score=42.19 Aligned_cols=100 Identities=10% Similarity=-0.010 Sum_probs=56.1
Q ss_pred EEEEEEEEcCCCCCCCCCC--CChHHHHHHHHHHHHHcCCCCCCcCEEEEccCCCccCCH-HHHHHHHHHhccCCCceee
Q 012221 311 AEYLGGAVNCDAYHMTDPR--ADGLGVSSCIESSLEDAGVSPEEVNYINAHATSTLAGDL-AEINAIKKVFKNTTGIKIN 387 (468)
Q Consensus 311 a~i~g~~~~~d~~~~~~~~--~~~~~~~~~i~~al~~Agl~~~dId~v~~h~~gt~~~D~-~E~~al~~~f~~~~~~~v~ 387 (468)
+.|.|.+..--+.+...+. ....-..++++++|+++||+++|||.|... +.+...+. .....+....+-...++..
T Consensus 5 v~Ivg~~rTp~g~~~g~~~~~~~~~L~~~A~~~Al~dAgl~~~dID~vi~g-~~~~~~~~~~~a~~v~~~lGl~~~~p~~ 83 (426)
T PRK08170 5 VYIVDGARTPFLKARGGPGPFSASDLAVAAGRALLNRQPFAPDDLDEVILG-CAMPSPDEANIARVVALRLGCGEKVPAW 83 (426)
T ss_pred EEEEecCCCCccCCCCCCCCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEE-eccCCCCcChHHHHHHHHhCcCCCceee
Confidence 3466766654443221111 123345678999999999999999988753 22222221 1112233333321122222
Q ss_pred ecccccCccccchhHHHHHHHHHHHhcCC
Q 012221 388 ATKSMIGHCLGAAGGLEAIATVKAITTGW 416 (468)
Q Consensus 388 s~k~~~Gh~~~AsG~~~l~~~~~~l~~~~ 416 (468)
.+. ..++||+..+..+..+++.|.
T Consensus 84 ~v~-----~~CaSg~~al~~A~~~I~sG~ 107 (426)
T PRK08170 84 TVQ-----RNCASGMQALDSAAANIALGR 107 (426)
T ss_pred ecc-----chhhHHHHHHHHHHHHHHCCC
Confidence 221 238889888999999998874
|
|
| >PRK12578 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=86.59 E-value=3.4 Score=41.72 Aligned_cols=96 Identities=16% Similarity=0.151 Sum_probs=56.6
Q ss_pred EEEEEEEcCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCcCEEEEccCCCccCC-HHHHHHHHHHhccCCCceeeecc
Q 012221 312 EYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAGVSPEEVNYINAHATSTLAGD-LAEINAIKKVFKNTTGIKINATK 390 (468)
Q Consensus 312 ~i~g~~~~~d~~~~~~~~~~~~~~~~~i~~al~~Agl~~~dId~v~~h~~gt~~~D-~~E~~al~~~f~~~~~~~v~s~k 390 (468)
.|.|++...-+.+... ....-..++++++|+++||+++|||.+... +.+..++ ......+...++-.....+ .+
T Consensus 4 ~IvG~g~t~~~~~~~~--~~~eLa~~A~~~AL~dAgi~~~dID~vi~g-~~~~~~~~~~~a~~v~~~lGl~~~~~~-~v- 78 (385)
T PRK12578 4 AVIGVGNSKFGRRDDV--SVQELAWESIKEALNDAGVSQTDIELVVVG-STAYRGIELYPAPIVAEYSGLTGKVPL-RV- 78 (385)
T ss_pred EEEeecccceeecCCC--CHHHHHHHHHHHHHHHcCCCHHHCCEEEEE-ecccccccCChHHHHHHHhCCCCCCee-EE-
Confidence 4777776543333211 122344678999999999999999998764 3222111 1222334444443111111 11
Q ss_pred cccCccccchhHHHHHHHHHHHhcCC
Q 012221 391 SMIGHCLGAAGGLEAIATVKAITTGW 416 (468)
Q Consensus 391 ~~~Gh~~~AsG~~~l~~~~~~l~~~~ 416 (468)
+..+++|+..+..+...++.|.
T Consensus 79 ----~~~casg~~al~~A~~~I~sG~ 100 (385)
T PRK12578 79 ----EAMCATGLAASLTAYTAVASGL 100 (385)
T ss_pred ----eccCHHHHHHHHHHHHHHHCCC
Confidence 3567888888999999998884
|
|
| >PRK06065 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=85.31 E-value=5.1 Score=40.53 Aligned_cols=98 Identities=11% Similarity=0.137 Sum_probs=56.2
Q ss_pred EEEEEEEEcCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCcCEEEEccCCCccCCHH-HHHHHHHHhccCCCceeeec
Q 012221 311 AEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAGVSPEEVNYINAHATSTLAGDLA-EINAIKKVFKNTTGIKINAT 389 (468)
Q Consensus 311 a~i~g~~~~~d~~~~~~~~~~~~~~~~~i~~al~~Agl~~~dId~v~~h~~gt~~~D~~-E~~al~~~f~~~~~~~v~s~ 389 (468)
+.|.|++...-+.+... ....-..++++++|+++||+++|||.+.+..+........ -...+....+.. ..+...
T Consensus 11 vaIvG~g~t~~~~~~~~--~~~~L~~~A~~~Al~dagl~~~dID~~i~~~~~~~~~~~~~~a~~l~~~lG~~-~~~~~~- 86 (392)
T PRK06065 11 VAVIGAGLTLFRRRLLE--TPQELAWEAASKALDEAGLELKDIDCVVIGSAPDAFDGVHMKGEYLSHGSGGI-RKPVSR- 86 (392)
T ss_pred eEEEEecccCCcCCCCC--CHHHHHHHHHHHHHHHcCCCHHHCCEEEEeccCCcccccccHHHHHHHHcCCC-CCCeEE-
Confidence 45788887664443211 1123346789999999999999999987642211111111 111233322221 112111
Q ss_pred ccccCccccchhHHHHHHHHHHHhcCC
Q 012221 390 KSMIGHCLGAAGGLEAIATVKAITTGW 416 (468)
Q Consensus 390 k~~~Gh~~~AsG~~~l~~~~~~l~~~~ 416 (468)
+ +..+++|...+..+..+++.|.
T Consensus 87 ---V-~~~gasG~~al~~A~~~I~sG~ 109 (392)
T PRK06065 87 ---V-YVGGATGVMTAIAGWYHVASGL 109 (392)
T ss_pred ---E-ecCchhHHHHHHHHHHHHhCCC
Confidence 1 3357889888888999999884
|
|
| >PRK07937 lipid-transfer protein; Provisional | Back alignment and domain information |
|---|
Probab=84.10 E-value=6.1 Score=39.31 Aligned_cols=46 Identities=9% Similarity=0.168 Sum_probs=32.0
Q ss_pred EEEEEEEEcCCCCCCCCCCCC-hHHHHHHHHHHHHHcCCCCCCcCEEE
Q 012221 311 AEYLGGAVNCDAYHMTDPRAD-GLGVSSCIESSLEDAGVSPEEVNYIN 357 (468)
Q Consensus 311 a~i~g~~~~~d~~~~~~~~~~-~~~~~~~i~~al~~Agl~~~dId~v~ 357 (468)
+.|.|++...-+.+... ... ..-..+++++||++|||+++|||.+.
T Consensus 4 vaIvG~g~t~~~~~~~~-~~~~~el~~eA~~~Al~DAgl~~~dID~~~ 50 (352)
T PRK07937 4 VAVVGFAQAPHVRRTDG-TTNGVEMLMPCFAELYAELGITKSDIGFWC 50 (352)
T ss_pred EEEEEeeccccccCCCC-CCcHHHHHHHHHHHHHHHcCCCHHHCCEEE
Confidence 44788877654432211 112 34557899999999999999999884
|
|
| >PRK05790 putative acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=83.87 E-value=6.7 Score=39.69 Aligned_cols=100 Identities=16% Similarity=0.021 Sum_probs=53.9
Q ss_pred EEEEEEEEcCCCCCCC--CCCCChHHHHHHHHHHHHHcCCCCCCcCEEEEccCCCccC-CHHHHHHHHHHhccCCCceee
Q 012221 311 AEYLGGAVNCDAYHMT--DPRADGLGVSSCIESSLEDAGVSPEEVNYINAHATSTLAG-DLAEINAIKKVFKNTTGIKIN 387 (468)
Q Consensus 311 a~i~g~~~~~d~~~~~--~~~~~~~~~~~~i~~al~~Agl~~~dId~v~~h~~gt~~~-D~~E~~al~~~f~~~~~~~v~ 387 (468)
+.|.|++..--+.+.. .......-..+++++||+++||+++|||.|... +.+..+ .......+....+-....+..
T Consensus 4 v~IvG~~~tp~~r~~g~~~~~~~~~La~~A~~~AL~dAgl~~~dID~vi~g-~~~~~~~~~~~~~~~~~~~gl~~~~~~~ 82 (393)
T PRK05790 4 VVIVSAARTPIGKFGGALKDVSAVELGAIVIKAALERAGVPPEQVDEVIMG-QVLQAGAGQNPARQAALKAGLPVEVPAL 82 (393)
T ss_pred eEEEeeecCCccCCCCCCCCCCHHHHHHHHHHHHHHHcCCCHHHCCeEEEE-EecCCCCCCcHHHHHHHHcCCCCCCcee
Confidence 4577777655443211 011123345678999999999999999988642 211111 111222122111211011111
Q ss_pred ecccccCccccchhHHHHHHHHHHHhcCC
Q 012221 388 ATKSMIGHCLGAAGGLEAIATVKAITTGW 416 (468)
Q Consensus 388 s~k~~~Gh~~~AsG~~~l~~~~~~l~~~~ 416 (468)
.=+..+++|+..+..+..+++.|.
T Consensus 83 -----~v~~~Casg~~al~~A~~~I~sG~ 106 (393)
T PRK05790 83 -----TINKVCGSGLKAVALAAQAIRAGD 106 (393)
T ss_pred -----eecccchHHHHHHHHHHHHHHcCC
Confidence 112367888888888888888874
|
|
| >PRK06158 thiolase; Provisional | Back alignment and domain information |
|---|
Probab=82.58 E-value=6.3 Score=39.75 Aligned_cols=94 Identities=12% Similarity=-0.007 Sum_probs=56.5
Q ss_pred EEEEEEEEcCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCcCEEEEccCCCccCCHHHHHHHHHHhccCCCceeeecc
Q 012221 311 AEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAGVSPEEVNYINAHATSTLAGDLAEINAIKKVFKNTTGIKINATK 390 (468)
Q Consensus 311 a~i~g~~~~~d~~~~~~~~~~~~~~~~~i~~al~~Agl~~~dId~v~~h~~gt~~~D~~E~~al~~~f~~~~~~~v~s~k 390 (468)
+.|.|++....+.+.. .....-..+++++||++|||+++|||.+..... . +......+.+..+-. ..++
T Consensus 10 vaIvG~g~t~~~~~~~--~t~~eL~~eA~~~Al~dAgl~~~dID~iv~~~~-~---~~~~~~~la~~lGl~-~~~~---- 78 (384)
T PRK06158 10 TAIVGAATAGLGEAPG--LSAMELLAQAAHRALADAGLTMADVDGLFTASP-D---DALWGLSVAEYLGIR-PRFV---- 78 (384)
T ss_pred EEEEEeeeccceeCCC--CCHHHHHHHHHHHHHHHcCCCHHHCCEEEEecC-C---CCCcHHHHHHHcCCC-Ceee----
Confidence 4588888765443311 112234567899999999999999999876432 1 111112344444431 1221
Q ss_pred cccCccccchhHHHHHHHHHHHhcCC
Q 012221 391 SMIGHCLGAAGGLEAIATVKAITTGW 416 (468)
Q Consensus 391 ~~~Gh~~~AsG~~~l~~~~~~l~~~~ 416 (468)
..-+..+++|+..+..+...++.|.
T Consensus 79 -~~~~~g~~s~~~al~~A~~~I~sG~ 103 (384)
T PRK06158 79 -DGTMIGGSSFLAHLLPAALALEAGL 103 (384)
T ss_pred -ccccCccHHHHHHHHHHHHHHHcCC
Confidence 1124567788888888888888873
|
|
| >PLN02644 acetyl-CoA C-acetyltransferase | Back alignment and domain information |
|---|
Probab=82.36 E-value=9 Score=38.77 Aligned_cols=99 Identities=18% Similarity=0.071 Sum_probs=54.5
Q ss_pred EEEEEEEEcCCCCCCC--CCCCChHHHHHHHHHHHHHcCCCCCCcCEEEEcc-CCCccCCHHHHHHHHHHhccCCCceee
Q 012221 311 AEYLGGAVNCDAYHMT--DPRADGLGVSSCIESSLEDAGVSPEEVNYINAHA-TSTLAGDLAEINAIKKVFKNTTGIKIN 387 (468)
Q Consensus 311 a~i~g~~~~~d~~~~~--~~~~~~~~~~~~i~~al~~Agl~~~dId~v~~h~-~gt~~~D~~E~~al~~~f~~~~~~~v~ 387 (468)
+.|.|++..--+.+.. .......-..++++++|+++||+++|||.|..-. .....+- .....+....+-...++..
T Consensus 3 v~IvG~~~Tp~g~~~~~~~~~~~~~L~~~a~~~al~dAgl~~~~ID~vv~g~~~~~~~~~-~~~~~~~~~~Gl~~~~p~~ 81 (394)
T PLN02644 3 VCIVGVARTPIGGFLGSLSSLSATELGSIAIQAALERAGVDPALVQEVFFGNVLSANLGQ-APARQAALGAGLPPSTICT 81 (394)
T ss_pred EEEEeeccCCccCCCCccCCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEEecCcCCcCC-cHHHHHHHhcCCCCCCceE
Confidence 3466766554333211 0111233457789999999999999999987521 1111111 1111122222221112222
Q ss_pred ecccccCccccchhHHHHHHHHHHHhcC
Q 012221 388 ATKSMIGHCLGAAGGLEAIATVKAITTG 415 (468)
Q Consensus 388 s~k~~~Gh~~~AsG~~~l~~~~~~l~~~ 415 (468)
.+ +..++||+..+..+..+++.|
T Consensus 82 ~v-----~~~caSg~~av~~Aa~~I~sG 104 (394)
T PLN02644 82 TV-----NKVCASGMKAVMLAAQSIQLG 104 (394)
T ss_pred EE-----eccchHHHHHHHHHHHHHHcC
Confidence 21 346899998899999988877
|
|
| >TIGR01930 AcCoA-C-Actrans acetyl-CoA acetyltransferases | Back alignment and domain information |
|---|
Probab=80.77 E-value=5.3 Score=40.33 Aligned_cols=77 Identities=16% Similarity=0.087 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHcCCCCCCcCEEEEccCCCccCC-HHHHHHHHHHhccCCCceeeecccccCccccchhHHHHHHHHHHH
Q 012221 334 GVSSCIESSLEDAGVSPEEVNYINAHATSTLAGD-LAEINAIKKVFKNTTGIKINATKSMIGHCLGAAGGLEAIATVKAI 412 (468)
Q Consensus 334 ~~~~~i~~al~~Agl~~~dId~v~~h~~gt~~~D-~~E~~al~~~f~~~~~~~v~s~k~~~Gh~~~AsG~~~l~~~~~~l 412 (468)
-..+++++||+++||+++|||.+... +.++..+ ......+....+-....+...+ ...+++|+..+..+...+
T Consensus 24 La~~A~~~Al~dAgl~~~dID~vv~g-~~~~~~~~~~~a~~va~~lGl~~~~~~~~v-----~~~Casg~~al~~A~~~I 97 (386)
T TIGR01930 24 LGAAVIKELLERNPLDPELIDDVIFG-NVLQAGEQQNIARQAALLAGLPESVPAYTV-----NRQCASGLQAVILAAQLI 97 (386)
T ss_pred HHHHHHHHHHHHcCCCHHHCCEEEEE-eccCCCCCChHHHHHHHHcCCCCCceeeee-----cchhhHHHHHHHHHHHHH
Confidence 35678999999999999999998753 3322211 2222223333332111222222 145778888888888888
Q ss_pred hcCC
Q 012221 413 TTGW 416 (468)
Q Consensus 413 ~~~~ 416 (468)
+.|.
T Consensus 98 ~sG~ 101 (386)
T TIGR01930 98 RAGE 101 (386)
T ss_pred HCCC
Confidence 8874
|
This model represents a large family of enzymes which catalyze the thiolysis of a linear fatty acid CoA (or acetoacetyl-CoA) using a second CoA molecule to produce acetyl-CoA and a CoA-ester product two carbons shorter (or, alternatively, the condensation of two molecules of acetyl-CoA to produce acetoacetyl-CoA and CoA). This enzyme is also known as "thiolase", "3-ketoacyl-CoA thiolase", "beta-ketothiolase" and "Fatty oxidation complex beta subunit". When catalyzing the degradative reaction on fatty acids the corresponding EC number is 2.3.1.16. The condensation reaction corresponds to 2.3.1.9. Note that the enzymes which catalyze the condensation are generally not involved in fatty acid biosynthesis, which is carried out by a decarboxylating condensation of acetyl and malonyl esters of acyl carrier proteins. Rather, this activity may produce acetoacetyl-CoA for pathways such as IPP biosynthesis in the absence of sufficient fatt |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 468 | ||||
| 1j3n_A | 408 | Crystal Structure Of 3-Oxoacyl-(Acyl-Carrier Protei | 1e-101 | ||
| 1e5m_A | 416 | Beta Ketoacyl Acyl Carrier Protein Synthase Ii (Kas | 6e-99 | ||
| 2gqd_A | 437 | The Crystal Structure Of B-Ketoacyl-Acp Synthase Ii | 2e-94 | ||
| 2gfw_A | 427 | Structure Of Wild Type E. Coli Fabf (Kasii) Length | 9e-92 | ||
| 1b3n_A | 412 | Beta-Ketoacyl Carrier Protein Synthase As A Drug Ta | 1e-91 | ||
| 2gfy_A | 427 | Structure Of E. Coli Fabf(K335a) Mutant With Covale | 5e-91 | ||
| 3hnz_A | 427 | Structure Of E. Coli Fabf(C163a) In Complex With Pl | 1e-90 | ||
| 2gfv_A | 427 | Structure Of E. Coli Fabf (Kasii) C163q Mutant Leng | 2e-90 | ||
| 1ox0_A | 430 | The Crystal Structure Of Beta-Ketoacyl-[acyl Carrie | 1e-79 | ||
| 2rjt_A | 428 | Crystal Structure Analysis Of A Surface Entropy Red | 7e-79 | ||
| 3kzu_A | 428 | Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protei | 7e-79 | ||
| 3o04_A | 413 | Crystal Structure Of The Beta-Keto-Acyl Carrier Pro | 8e-79 | ||
| 2alm_A | 431 | Crystal Structure Analysis Of A Mutant Beta-Ketoacy | 2e-78 | ||
| 3e60_A | 424 | Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protei | 3e-73 | ||
| 1w0i_A | 431 | Arabidopsis Thaliana Mitochondrial Kas Length = 431 | 4e-73 | ||
| 4ddo_A | 451 | Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Protei | 2e-72 | ||
| 4f32_A | 451 | Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Protei | 3e-71 | ||
| 2iwy_A | 438 | Human Mitochondrial Beta-ketoacyl Acp Synthase Leng | 2e-70 | ||
| 2c9h_A | 444 | Structure Of Mitochondrial Beta-Ketoacyl Synthase L | 4e-69 | ||
| 2wgd_A | 416 | Crystal Structure Of Kasa Of Mycobacterium Tubercul | 2e-60 | ||
| 2wgf_A | 416 | Crystal Structure Of Mycobacterium Tuberculosis C17 | 5e-59 | ||
| 3lrf_A | 428 | Crystal Structure Of Beta-Ketoacyl Synthase From Br | 5e-56 | ||
| 2gp6_A | 434 | X-Ray Crystal Structure Of Mycobacterium Tuberculos | 5e-56 | ||
| 3u0f_A | 411 | The Structure Of Beta-Ketoacyl Synthase From Brucel | 6e-56 | ||
| 1dd8_A | 406 | Crystal Structure Of Beta-Ketoacyl-[acyl Carrier Pr | 8e-55 | ||
| 1fj4_A | 406 | The Structure Of Beta-Ketoacyl-[acyl Carrier Protei | 3e-54 | ||
| 2byw_A | 418 | Structure Of Escherichia Coli Beta-Ketoacyl (Acyl C | 4e-54 | ||
| 1h4f_A | 406 | E. Coli Beta-Ketoacyl [acyl Carrier Protein] Syntha | 6e-54 | ||
| 2byz_A | 418 | Structure Of E. Coli Kas I H298q Mutant In Complex | 2e-53 | ||
| 2byy_A | 418 | E. Coli Kas I H298e Mutation Length = 418 | 3e-53 | ||
| 1tqy_A | 424 | The Actinorhodin KetosynthaseCHAIN LENGTH FACTOR Le | 7e-50 | ||
| 3oyt_A | 410 | 1.84 Angstrom Resolution Crystal Structure Of 3-Oxo | 1e-49 | ||
| 1ek4_A | 418 | Beta-Ketoacyl [acyl Carrier Protein] Synthase I In | 2e-49 | ||
| 1f91_A | 406 | Beta-Ketoacyl-[acyl-Carrier-Protein] Synthase I In | 2e-49 | ||
| 2vb7_C | 406 | Beta-Ketoacyl-Acp Synthase I (Kas) From E. Coli, Ap | 6e-49 | ||
| 4ewg_A | 412 | Crystal Structure Of A Beta-Ketoacyl Synthase From | 8e-46 | ||
| 1tqy_B | 415 | The Actinorhodin KetosynthaseCHAIN LENGTH FACTOR Le | 5e-29 | ||
| 2hg4_A | 917 | Structure Of The Ketosynthase-acyltransferase Didom | 1e-24 | ||
| 2qo3_A | 915 | Crystal Structure Of [ks3][at3] Didomain From Modul | 5e-20 | ||
| 3hhd_A | 965 | Structure Of The Human Fatty Acid Synthase Ks-Mat D | 5e-16 | ||
| 2vz8_A | 2512 | Crystal Structure Of Mammalian Fatty Acid Synthase | 2e-15 | ||
| 3zen_D | 3089 | Cryo-em Structure Of The Mycobacterial Fatty Acid S | 4e-11 | ||
| 2uv9_A | 1878 | Crystal Structure Of Fatty Acid Synthase From Therm | 3e-04 |
| >pdb|1J3N|A Chain A, Crystal Structure Of 3-Oxoacyl-(Acyl-Carrier Protein) Synthase Ii From Thermus Thermophilus Hb8 Length = 408 | Back alignment and structure |
|
| >pdb|1E5M|A Chain A, Beta Ketoacyl Acyl Carrier Protein Synthase Ii (Kasii) From Synechocystis Sp Length = 416 | Back alignment and structure |
|
| >pdb|2GQD|A Chain A, The Crystal Structure Of B-Ketoacyl-Acp Synthase Ii (Fabf) From Staphylococcus Aureus Length = 437 | Back alignment and structure |
|
| >pdb|2GFW|A Chain A, Structure Of Wild Type E. Coli Fabf (Kasii) Length = 427 | Back alignment and structure |
|
| >pdb|1B3N|A Chain A, Beta-Ketoacyl Carrier Protein Synthase As A Drug Target, Implications From The Crystal Structure Of A Complex With The Inhibitor Cerulenin. Length = 412 | Back alignment and structure |
|
| >pdb|2GFY|A Chain A, Structure Of E. Coli Fabf(K335a) Mutant With Covalently Linked Dodecanoic Acid Length = 427 | Back alignment and structure |
|
| >pdb|3HNZ|A Chain A, Structure Of E. Coli Fabf(C163a) In Complex With Platensimycin Length = 427 | Back alignment and structure |
|
| >pdb|2GFV|A Chain A, Structure Of E. Coli Fabf (Kasii) C163q Mutant Length = 427 | Back alignment and structure |
|
| >pdb|1OX0|A Chain A, The Crystal Structure Of Beta-Ketoacyl-[acyl Carrier Protein] Synthase Ii From Streptococcus Pneumoniae Length = 430 | Back alignment and structure |
|
| >pdb|2RJT|A Chain A, Crystal Structure Analysis Of A Surface Entropy Reduction Mutant Of S. Pneumoniae Fabf Length = 428 | Back alignment and structure |
|
| >pdb|3KZU|A Chain A, Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protein) Synthase Ii From Brucella Melitensis Length = 428 | Back alignment and structure |
|
| >pdb|3O04|A Chain A, Crystal Structure Of The Beta-Keto-Acyl Carrier Protein Synthase Ii (Lmo2201) From Listeria Monocytogenes Length = 413 | Back alignment and structure |
|
| >pdb|2ALM|A Chain A, Crystal Structure Analysis Of A Mutant Beta-Ketoacyl-[acyl Carrier Protein] Synthase Ii From Streptococcus Pneumoniae Length = 431 | Back alignment and structure |
|
| >pdb|3E60|A Chain A, Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protein) Synthase Ii From Bartonella Henselae Length = 424 | Back alignment and structure |
|
| >pdb|1W0I|A Chain A, Arabidopsis Thaliana Mitochondrial Kas Length = 431 | Back alignment and structure |
|
| >pdb|4DDO|A Chain A, Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Protein] Synthase Ii From Burkholderia Vietnamiensis Length = 451 | Back alignment and structure |
|
| >pdb|4F32|A Chain A, Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Protein] Synthase Ii From Burkholderia Vietnamiensis In Complex With Platencin Length = 451 | Back alignment and structure |
|
| >pdb|2IWY|A Chain A, Human Mitochondrial Beta-ketoacyl Acp Synthase Length = 438 | Back alignment and structure |
|
| >pdb|2C9H|A Chain A, Structure Of Mitochondrial Beta-Ketoacyl Synthase Length = 444 | Back alignment and structure |
|
| >pdb|2WGD|A Chain A, Crystal Structure Of Kasa Of Mycobacterium Tuberculosis Length = 416 | Back alignment and structure |
|
| >pdb|2WGF|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa Variant Length = 416 | Back alignment and structure |
|
| >pdb|3LRF|A Chain A, Crystal Structure Of Beta-Ketoacyl Synthase From Brucella Melitensis Length = 428 | Back alignment and structure |
|
| >pdb|2GP6|A Chain A, X-Ray Crystal Structure Of Mycobacterium Tuberculosis Beta- Ketoacyl Acyl Carrier Protein Synthase Ii (Mtkasb) Length = 434 | Back alignment and structure |
|
| >pdb|3U0F|A Chain A, The Structure Of Beta-Ketoacyl Synthase From Brucella Melitensis Bound To The Fragment 7-Hydroxycoumarin Length = 411 | Back alignment and structure |
|
| >pdb|1DD8|A Chain A, Crystal Structure Of Beta-Ketoacyl-[acyl Carrier Protein] Synthase I From Escherichia Coli Length = 406 | Back alignment and structure |
|
| >pdb|1FJ4|A Chain A, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein] Synthase I In Complex With Thiolactomycin, Implications For Drug Design Length = 406 | Back alignment and structure |
|
| >pdb|2BYW|A Chain A, Structure Of Escherichia Coli Beta-Ketoacyl (Acyl Carrier Protein) Synthase I Lys328ala Mutant Length = 418 | Back alignment and structure |
|
| >pdb|1H4F|A Chain A, E. Coli Beta-Ketoacyl [acyl Carrier Protein] Synthase I K328r Length = 406 | Back alignment and structure |
|
| >pdb|2BYZ|A Chain A, Structure Of E. Coli Kas I H298q Mutant In Complex With C12 Fatty Acid Length = 418 | Back alignment and structure |
|
| >pdb|2BYY|A Chain A, E. Coli Kas I H298e Mutation Length = 418 | Back alignment and structure |
|
| >pdb|1TQY|A Chain A, The Actinorhodin KetosynthaseCHAIN LENGTH FACTOR Length = 424 | Back alignment and structure |
|
| >pdb|3OYT|A Chain A, 1.84 Angstrom Resolution Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protein) Synthase I (Fabb) From Yersinia Pestis Co92 Length = 410 | Back alignment and structure |
|
| >pdb|1EK4|A Chain A, Beta-Ketoacyl [acyl Carrier Protein] Synthase I In Complex With Dodecanoic Acid To 1.85 Resolution Length = 418 | Back alignment and structure |
|
| >pdb|1F91|A Chain A, Beta-Ketoacyl-[acyl-Carrier-Protein] Synthase I In Complex With C10 Fatty Acid Substrate Length = 406 | Back alignment and structure |
|
| >pdb|2VB7|C Chain C, Beta-Ketoacyl-Acp Synthase I (Kas) From E. Coli, Apo Structure After Soak In Peg Solution Length = 406 | Back alignment and structure |
|
| >pdb|4EWG|A Chain A, Crystal Structure Of A Beta-Ketoacyl Synthase From Burkholderia Phymatum Stm815 Length = 412 | Back alignment and structure |
|
| >pdb|1TQY|B Chain B, The Actinorhodin KetosynthaseCHAIN LENGTH FACTOR Length = 415 | Back alignment and structure |
|
| >pdb|2HG4|A Chain A, Structure Of The Ketosynthase-acyltransferase Didomain Of Module 5 From Debs. Length = 917 | Back alignment and structure |
|
| >pdb|2QO3|A Chain A, Crystal Structure Of [ks3][at3] Didomain From Module 3 Of 6- Deoxyerthronolide B Synthase Length = 915 | Back alignment and structure |
|
| >pdb|3HHD|A Chain A, Structure Of The Human Fatty Acid Synthase Ks-Mat Didomain As A Framework For Inhibitor Design. Length = 965 | Back alignment and structure |
|
| >pdb|2VZ8|A Chain A, Crystal Structure Of Mammalian Fatty Acid Synthase Length = 2512 | Back alignment and structure |
|
| >pdb|3ZEN|D Chain D, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase Length = 3089 | Back alignment and structure |
|
| >pdb|2UV9|A Chain A, Crystal Structure Of Fatty Acid Synthase From Thermomyces Lanuginosus At 3.1 Angstrom Resolution. This File Contains The Alpha Subunits Of The Fatty Acid Synthase. The Entire Crystal Structure Consists Of One Heterododecameric Fatty Acid Synthase And Is Described In Remark 400 Length = 1878 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1ox0_A Beta ketoacyl-acyl carrier protein synthase; transferase; 1.30A {Streptococcus pneumoniae} SCOP: c.95.1.1 c.95.1.1 PDB: 1oxh_A 2alm_A 2rjt_A Length = 430 | Back alignment and structure |
|---|
Score = 598 bits (1544), Expect = 0.0
Identities = 175/425 (41%), Positives = 254/425 (59%), Gaps = 6/425 (1%)
Query: 43 STKSAPKREKDPKKRVVITGMGLVSVFGNDVDAYYNKLLDGESGITMIDRFDASKFPTRF 102
S+ P+ RVV+TG G+ S GN + ++N L G+ GI I +FD S F
Sbjct: 10 SSGLVPRGSHMKLNRVVVTGYGVTSPIGNTPEEFWNSLATGKIGIGGITKFDHSDFDVHN 69
Query: 103 GGQIRGFSAEGYIDGKNDRRLDDCLRYCIVAGKKALEDADLGADISKKIDKERAGVLVGT 162
+I+ F + Y K+ R D+ Y + A ++A+ A+L + ++++R GV+V +
Sbjct: 70 AAEIQDFPFDKYFVKKDTNRFDNYSLYALYAAQEAVNHANLDVE---ALNRDRFGVIVAS 126
Query: 163 GMGGLTVFSDGVQALIEKGHRKITPFFIPYAITNMGSALLAIDLGFMGPNYSISTACATS 222
G+GG+ D V L EKG +++ P +P A+ NM S +A+ G G SI+TAC++S
Sbjct: 127 GIGGIKEIEDQVLRLHEKGPKRVKPMTLPKALPNMASGNVAMRFGANGVCKSINTACSSS 186
Query: 223 NYCFYAAANHIRRGEADLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWDKDR 282
N A I+ G D+ML GGTEA+I P + GF A ALS +DP AS P+DKDR
Sbjct: 187 NDAIGDAFRSIKFGFQDVMLVGGTEASITPFAIAGFQALTALS-TTEDPTRASIPFDKDR 245
Query: 283 DGFVMGEGAGVLVMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESS 342
+GFVMGEG+G+LV+ESLEHA KRGA I+AE +G CDAYHMT P +G G I+ +
Sbjct: 246 NGFVMGEGSGMLVLESLEHAEKRGATILAEVVGYGNTCDAYHMTSPHPEGQGAIKAIKLA 305
Query: 343 LEDAGVSPEEVNYINAHATSTLAGDLAEINAIKKVFKNTTGIKINATKSMIGHCLGAAGG 402
LE+A +SPE+V Y+NAH TST A + E AI V + +++TKS GH LGAAG
Sbjct: 306 LEEAEISPEQVAYVNAHGTSTPANEKGESGAIVAVLGKE--VPVSSTKSFTGHLLGAAGA 363
Query: 403 LEAIATVKAITTGWLHPSINQFNPEPSVEFDTVANKKQQHEVNVAISNSFGFGGHNSVVA 462
+EAI T++A+ ++ + +E + V + + E+ AISN+FGFGGHN+V+A
Sbjct: 364 VEAIVTIEAMRHNFVPMTAGTSEVSDYIEANVVYGQGLEKEIPYAISNTFGFGGHNAVLA 423
Query: 463 FSAFK 467
F ++
Sbjct: 424 FKRWE 428
|
| >1e5m_A KAS II, beta ketoacyl acyl carrier protein synthase II; condensing enzyme, biosynthetic role, carbon-carbon bond formation; 1.54A {Synechocystis SP} SCOP: c.95.1.1 c.95.1.1 Length = 416 | Back alignment and structure |
|---|
Score = 597 bits (1543), Expect = 0.0
Identities = 195/414 (47%), Positives = 268/414 (64%), Gaps = 4/414 (0%)
Query: 55 KKRVVITGMGLVSVFGNDVDAYYNKLLDGESGITMIDRFDASKFPTRFGGQIRGFSAEGY 114
KKRVV+TG+G ++ GN + Y+ L++G +GI I RFDAS RFGG+++ F A +
Sbjct: 6 KKRVVVTGLGAITPIGNTLQDYWQGLMEGRNGIGPITRFDASDQACRFGGEVKDFDATQF 65
Query: 115 IDGKNDRRLDDCLRYCIVAGKKALEDADLGADISKKIDKERAGVLVGTGMGGLTVFSDGV 174
+D K +R+D + + A ++A+ DA L + +++ + GVL+GTG+GGL V D
Sbjct: 66 LDRKEAKRMDRFCHFAVCASQQAINDAKLVIN---ELNADEIGVLIGTGIGGLKVLEDQQ 122
Query: 175 QALIEKGHRKITPFFIPYAITNMGSALLAIDLGFMGPNYSISTACATSNYCFYAAANHIR 234
L++KG + +PF IP I NM S L AI+LG GPN TACA + A ++
Sbjct: 123 TILLDKGPSRCSPFMIPMMIANMASGLTAINLGAKGPNNCTVTACAAGSNAIGDAFRLVQ 182
Query: 235 RGEADLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWDKDRDGFVMGEGAGVL 294
G A M+ GGTEAAI P+ GF + RALS RNDDP ASRP+DKDRDGFVMGEG+G+L
Sbjct: 183 NGYAKAMICGGTEAAITPLSYAGFASARALSFRNDDPLHASRPFDKDRDGFVMGEGSGIL 242
Query: 295 VMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAGVSPEEVN 354
++E LE A+ RGA I E +G A+ CDAYH+T P DG G + I +L+D+G+ PE V+
Sbjct: 243 ILEELESALARGAKIYGEMVGYAMTCDAYHITAPVPDGRGATRAIAWALKDSGLKPEMVS 302
Query: 355 YINAHATSTLAGDLAEINAIKKVFKN-TTGIKINATKSMIGHCLGAAGGLEAIATVKAIT 413
YINAH TST A D+ E AIK+ N I +++TKSM GH LG +GG+EA+ATV AI
Sbjct: 303 YINAHGTSTPANDVTETRAIKQALGNHAYNIAVSSTKSMTGHLLGGSGGIEAVATVMAIA 362
Query: 414 TGWLHPSINQFNPEPSVEFDTVANKKQQHEVNVAISNSFGFGGHNSVVAFSAFK 467
+ P+IN NP+P + D V + + V+VA+SNSFGFGGHN +AF ++
Sbjct: 363 EDKVPPTINLENPDPECDLDYVPGQSRALIVDVALSNSFGFGGHNVTLAFKKYQ 416
|
| >3o04_A LMO2201 protein, beta-keto-acyl carrier protein synthase II; csgid, structural genomics; 1.85A {Listeria monocytogenes} Length = 413 | Back alignment and structure |
|---|
Score = 589 bits (1521), Expect = 0.0
Identities = 170/414 (41%), Positives = 253/414 (61%), Gaps = 5/414 (1%)
Query: 55 KKRVVITGMGLVSVFGNDVDAYYNKLLDGESGITMIDRFDASKFPTRFGGQIRGFSAEGY 114
K+RVV+TG+G V+ GND + + G +G+ + R + FP + +++ F E Y
Sbjct: 3 KRRVVVTGIGAVTPIGNDAETSWENAKKGVNGVAKMTRLNPDDFPVKIAAELKDFDVEKY 62
Query: 115 IDGKNDRRLDDCLRYCIVAGKKALEDADLGADISKKIDKERAGVLVGTGMGGLTVFSDGV 174
++ K R++D Y I + + A++D+ L D + R GV +G+G+GG+ F
Sbjct: 63 LEKKEARKMDRFTHYAIASAEMAVQDSGLVID---DSNANRVGVWIGSGIGGMETFETQY 119
Query: 175 QALIEKGHRKITPFFIPYAITNMGSALLAIDLGFMGPNYSISTACATSNYCFYAAANHIR 234
+ + +GHR+++PFF+P I +MGS ++I G G N + TACAT+ A I
Sbjct: 120 EIFLNRGHRRVSPFFVPMMIPDMGSGQVSIRFGAKGINSTTVTACATATNSIGDAFKVIE 179
Query: 235 RGEADLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWDKDRDGFVMGEGAGVL 294
RG+AD M+ GG EA I + L GF A +ALS N DP+TA RP+DKDRDGF++GEGAG++
Sbjct: 180 RGDADAMITGGAEAPITKMSLAGFTANKALS-LNPDPETACRPFDKDRDGFIIGEGAGIV 238
Query: 295 VMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAGVSPEEVN 354
++E EHA RGA I AE +G DAYH+T P +G G + ++ +++DAG++P++V+
Sbjct: 239 ILEEYEHAKARGAKIYAEIVGYGATGDAYHITAPAPNGEGAARAMKMAIDDAGLTPDKVD 298
Query: 355 YINAHATSTLAGDLAEINAIKKVFKN-TTGIKINATKSMIGHCLGAAGGLEAIATVKAIT 413
YINAH TST D E AIK VF + I++TKSM GH LGA+GG+EAI + I
Sbjct: 299 YINAHGTSTPYNDEYETQAIKTVFGEHAKKLAISSTKSMTGHTLGASGGIEAIFALLTIR 358
Query: 414 TGWLHPSINQFNPEPSVEFDTVANKKQQHEVNVAISNSFGFGGHNSVVAFSAFK 467
+ P+I+ N + + D V N+ ++ VNV ISNSFGFGGHN+ + F +
Sbjct: 359 DNIIAPTIHLKNQDEVCDLDYVPNEAREANVNVVISNSFGFGGHNATLVFKRIE 412
|
| >2gqd_A 3-oxoacyl-[acyl-carrier-protein] synthase 2; duplicated babababb fold, transferase; 2.30A {Staphylococcus aureus} Length = 437 | Back alignment and structure |
|---|
Score = 590 bits (1524), Expect = 0.0
Identities = 185/414 (44%), Positives = 263/414 (63%), Gaps = 5/414 (1%)
Query: 55 KKRVVITGMGLVSVFGNDVDAYYNKLLDGESGITMIDRFDASKFPTRFGGQIRGFSAEGY 114
KRVVITGMG +S GNDV + L G +GI I R D + G+++ F+ E +
Sbjct: 27 NKRVVITGMGALSPIGNDVKTTWENALKGVNGIDKITRIDTEPYSVHLAGELKNFNIEDH 86
Query: 115 IDGKNDRRLDDCLRYCIVAGKKALEDADLGADISKKIDKERAGVLVGTGMGGLTVFSDGV 174
ID K RR+D +Y IVA ++A++DA L + + +R GV +G+G+GG+ F
Sbjct: 87 IDKKEARRMDRFTQYAIVAAREAVKDAQLDIN---ENTADRIGVWIGSGIGGMETFEIAH 143
Query: 175 QALIEKGHRKITPFFIPYAITNMGSALLAIDLGFMGPNYSISTACATSNYCFYAAANHIR 234
+ L++KG R+++PFF+P I +M + ++IDLG GPN + TACAT A ++
Sbjct: 144 KQLMDKGPRRVSPFFVPMLIPDMATGQVSIDLGAKGPNGATVTACATGTNSIGEAFKIVQ 203
Query: 235 RGEADLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWDKDRDGFVMGEGAGVL 294
RG+AD M+ GGTEA I + + GF A RALS NDD +TA RP+ + RDGFVMGEGAG+L
Sbjct: 204 RGDADAMITGGTEAPITHMAIAGFSASRALS-TNDDIETACRPFQEGRDGFVMGEGAGIL 262
Query: 295 VMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAGVSPEEVN 354
V+ESLE A RGA I AE +G DAYH+T P +G G S ++++++DAG+ P++V
Sbjct: 263 VIESLESAQARGANIYAEIVGYGTTGDAYHITAPAPEGEGGSRAMQAAMDDAGIEPKDVQ 322
Query: 355 YINAHATSTLAGDLAEINAIKKVFKN-TTGIKINATKSMIGHCLGAAGGLEAIATVKAIT 413
Y+NAH TST GDL E+ AIK F +K+++TKSM GH LGA GG+EAI + +I
Sbjct: 323 YLNAHGTSTPVGDLNEVKAIKNTFGEAAKHLKVSSTKSMTGHLLGATGGIEAIFSALSIK 382
Query: 414 TGWLHPSINQFNPEPSVEFDTVANKKQQHEVNVAISNSFGFGGHNSVVAFSAFK 467
+ P+I+ P+P + D V N+ Q ++ A+SNS GFGGHN+V+ F F+
Sbjct: 383 DSKVAPTIHAVTPDPECDLDIVPNEAQDLDITYAMSNSLGFGGHNAVLVFKKFE 436
|
| >4ddo_A 3-oxoacyl-[acyl-carrier-protein] synthase 2; ssgcid, struct genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia vietnamiensis} PDB: 4f32_A* Length = 451 | Back alignment and structure |
|---|
Score = 588 bits (1518), Expect = 0.0
Identities = 166/438 (37%), Positives = 250/438 (57%), Gaps = 12/438 (2%)
Query: 40 TASSTKSAPKREKDPKKRVVITGMGLVSVFGNDVDAYYNKLLDGESGITMIDRFDASKFP 99
+ ++ + RVV+TG+G+VS G + + +L+ G SG+ + A +
Sbjct: 8 HMGTLEAQTQGPGSMTLRVVVTGIGIVSPLGCGKELVWQRLIGGGSGLRRLGDDIAGELS 67
Query: 100 TRFGGQIR--------GFSAEGYIDGKNDRRLDDCLRYCIVAGKKALEDADLGADISKKI 151
+ GG ++ GF E + K R++D ++ +VA +AL +A +
Sbjct: 68 AKVGGTVQDVAEDPEGGFDPERSVPHKELRKMDRFIQMAMVAADEALAEAGW--APEAEQ 125
Query: 152 DKERAGVLVGTGMGGLTVFSDGVQALIEKGHRKITPFFIPYAITNMGSALLAIDLGFMGP 211
+ER +V +G+GG ++ V+ +G R+++PF IP+ ++N+ + ++I F GP
Sbjct: 126 QRERTATVVASGIGGFPGLAEAVRIGETRGVRRLSPFTIPFFLSNLAAGQISIKHRFRGP 185
Query: 212 NYSISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAIIPIGLGGFVACRALSQR-NDD 270
TACA S A IR GEAD++LAGG EAA + LGGF A RALS +++
Sbjct: 186 LGCPVTACAASVQAIGDAMRMIRTGEADVVLAGGAEAAFDKVSLGGFAAARALSTGFSEE 245
Query: 271 PQTASRPWDKDRDGFVMGEGAGVLVMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRA 330
P ASRP+D+DRDGFVMGEGA ++V+ESL+HA+ RGA IAE +G DAYHMT
Sbjct: 246 PVRASRPFDRDRDGFVMGEGAAMVVVESLDHALARGARPIAEIIGYGTTADAYHMTAGPD 305
Query: 331 DGLGVSSCIESSLEDAGVSPEEVNYINAHATSTLAGDLAEINAIKKVFKNTTGIKINATK 390
DG G ++ +L V+PE+V+Y+NAHATST GD EI A+K VF G I++TK
Sbjct: 306 DGSGAMRAMKLALRMGDVAPEQVDYVNAHATSTPVGDAGEIEALKTVFGVGAGPAISSTK 365
Query: 391 SMIGHCLGAAGGLEAIATVKAITTGWLHPSINQFNPEPSVE-FDTVANKKQQHEVNVAIS 449
S GH LGAAG +EA ++ A+ G L ++N +P+P+ + D + + V +A+S
Sbjct: 366 SATGHLLGAAGAIEAAFSILALRDGVLPGTLNLEHPDPAADGLDLIGPAARHVPVEIALS 425
Query: 450 NSFGFGGHNSVVAFSAFK 467
N FGFGG N+ V F +
Sbjct: 426 NGFGFGGVNASVLFRRYP 443
|
| >3ho9_A 3-oxoacyl-[acyl-carrier-protein] synthase 2; FABF, platensimycin, platencin A1, KAS2, acyltransferase, fatty acid biosynthesis; HET: N3A; 1.90A {Escherichia coli} PDB: 3hnz_A* 3ho2_A* 3i8p_A* 3g11_A* 2gfx_A* 3g0y_A* 2gfv_A* 2gfw_A 2gfy_A* 1kas_A 1b3n_A Length = 427 | Back alignment and structure |
|---|
Score = 587 bits (1515), Expect = 0.0
Identities = 183/411 (44%), Positives = 268/411 (65%), Gaps = 5/411 (1%)
Query: 55 KKRVVITGMGLVSVFGNDVDAYYNKLLDGESGITMIDRFDASKFPTRFGGQIRGFSAEGY 114
K+RVV+TG+G++S GN V++ + LL G+SGI++ID FD S + T+F G ++ F+ E
Sbjct: 17 KRRVVVTGLGMLSPVGNTVESTWKALLAGQSGISLIDHFDTSAYATKFAGLVKDFNCEDI 76
Query: 115 IDGKNDRRLDDCLRYCIVAGKKALEDADLGADISKKIDKERAGVLVGTGMGGLTVFSDGV 174
I K R++D ++Y IVAG +A++D+ L + + R G +G+G+GGL + +
Sbjct: 77 ISRKEQRKMDAFIQYGIVAGVQAMQDSGLEIT---EENATRIGAAIGSGIGGLGLIEENH 133
Query: 175 QALIEKGHRKITPFFIPYAITNMGSALLAIDLGFMGPNYSISTACATSNYCFYAAANHIR 234
+L+ G RKI+PFF+P I NM + L I G GP+ SI+TA + + AA I
Sbjct: 134 TSLMNGGPRKISPFFVPSTIVNMVAGHLTIMYGLRGPSISIATAATSGVHNIGHAARIIA 193
Query: 235 RGEADLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWDKDRDGFVMGEGAGVL 294
G+AD+M+AGG E A P+G+GGF A RALS RND+PQ ASRPWDK+RDGFV+G+GAG+L
Sbjct: 194 YGDADVMVAGGAEKASTPLGVGGFGAARALSTRNDNPQAASRPWDKERDGFVLGDGAGML 253
Query: 295 VMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAGVSPEEVN 354
V+E EHA KRGA I AE +G ++ DAYHMT P +G G + + ++L DAG+ ++
Sbjct: 254 VLEEYEHAKKRGAKIYAELVGFGMSSDAYHMTSPPENGAGAALAMANALRDAGIEASQIG 313
Query: 355 YINAHATSTLAGDLAEINAIKKVFKN-TTGIKINATKSMIGHCLGAAGGLEAIATVKAIT 413
Y+NAH TST AGD AE A+K +F + + +++TKSM GH LGAAG +E+I ++ A+
Sbjct: 314 YVNAHGTSTPAGDKAEAQAVKTIFGEAASRVLVSSTKSMTGHLLGAAGAVESIYSILALR 373
Query: 414 TGWLHPSINQFNPEPSVEFDTVANK-KQQHEVNVAISNSFGFGGHNSVVAF 463
+ P+IN NP+ + D V ++ +Q + + NSFGFGG N + F
Sbjct: 374 DQAVPPTINLDNPDEGCDLDFVPHEARQVSGMEYTLCNSFGFGGTNGSLIF 424
|
| >2wge_A 3-oxoacyl-[acyl-carrier-protein] synthase 1; beta ketoacyl synthase I thiolactomycin, cytoplasm, transferase, acyltransferase; HET: TLM; 1.80A {Mycobacterium tuberculosis} PDB: 2wgd_A* 2wgg_A* 2wgf_A* Length = 416 | Back alignment and structure |
|---|
Score = 584 bits (1508), Expect = 0.0
Identities = 141/423 (33%), Positives = 229/423 (54%), Gaps = 10/423 (2%)
Query: 46 SAPKREKDPKKRVVITGMGLVSVFGNDVDAYYNKLLDGESGITMIDRFDASKF--PTRFG 103
S P VV+T + + D+++ + LL GESGI ++ +K+ + G
Sbjct: 2 SQPSTANGGFPSVVVTAVTATTSISPDIESTWKGLLAGESGIHALEDEFVTKWDLAVKIG 61
Query: 104 GQIRGFSAEGYIDGKNDRRLDDCLRYCIVAGKKALEDADLGADISKKIDKERAGVLVGTG 163
G ++ + ++ + RR+ R + G + E A ++D +R V+VGTG
Sbjct: 62 GHLKDP-VDSHMGRLDMRRMSYVQRMGKLLGGQLWESAGS-----PEVDPDRFAVVVGTG 115
Query: 164 MGGLTVFSDGVQALIEKGHRKITPFFIPYAITNMGSALLAIDLGFMGPNYSISTACATSN 223
+GG + + G RK++P + + N +A++ + LG + +AC++ +
Sbjct: 116 LGGAERIVESYDLMNAGGPRKVSPLAVQMIMPNGAAAVIGLQLGARAGVMTPVSACSSGS 175
Query: 224 YCFYAAANHIRRGEADLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWDKDRD 283
A I G+AD+ + GG E I + + F RA+S RND+P+ ASRP+DKDRD
Sbjct: 176 EAIAHAWRQIVMGDADVAVCGGVEGPIEALPIAAFSMMRAMSTRNDEPERASRPFDKDRD 235
Query: 284 GFVMGEGAGVLVMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSL 343
GFV GE ++++E+ EHA RGA +A LG + DA+HM P ADG+ + SL
Sbjct: 236 GFVFGEAGALMLIETEEHAKARGAKPLARLLGAGITSDAFHMVAPAADGVRAGRAMTRSL 295
Query: 344 EDAGVSPEEVNYINAHATSTLAGDLAEINAIKKVFKNTTGIKINATKSMIGHCLGAAGGL 403
E AG+SP +++++NAH T+T GD AE NAI+ + + A KS +GH +GA G L
Sbjct: 296 ELAGLSPADIDHVNAHGTATPIGDAAEANAIRVAGCDQ--AAVYAPKSALGHSIGAVGAL 353
Query: 404 EAIATVKAITTGWLHPSINQFNPEPSVEFDTVANKKQQHEVNVAISNSFGFGGHNSVVAF 463
E++ TV + G + P++N P+P ++ D VA + + + A++NSFGFGGHN +AF
Sbjct: 354 ESVLTVLTLRDGVIPPTLNYETPDPEIDLDVVAGEPRYGDYRYAVNNSFGFGGHNVALAF 413
Query: 464 SAF 466
+
Sbjct: 414 GRY 416
|
| >3kzu_A 3-oxoacyl-(acyl-carrier-protein) synthase II; seattle structural genomics center for infectious disease, ssgcid, acyltransferase; 1.75A {Brucella melitensis} PDB: 3e60_A Length = 428 | Back alignment and structure |
|---|
Score = 584 bits (1509), Expect = 0.0
Identities = 175/427 (40%), Positives = 259/427 (60%), Gaps = 12/427 (2%)
Query: 49 KREKDPKKRVVITGMGLVSVFGNDVDAYYNKLLDGESGITMIDRFDASKFPTRFGGQI-- 106
+RVVITG+GLVS + V+ + +LL GESG + F+ + +I
Sbjct: 3 HHHHHHMRRVVITGLGLVSPLASGVEETWKRLLAGESGARRVTEFEVDDLACQIACRIPV 62
Query: 107 -----RGFSAEGYIDGKNDRRLDDCLRYCIVAGKKALEDADLGADISKKIDKERAGVLVG 161
F+ + ++D K R++D + Y + A +AL+DA D+ R GVL+G
Sbjct: 63 GDGTNGTFNPDLHMDPKEQRKVDPFIVYAVGAADQALDDAGW--HPENDEDQVRTGVLIG 120
Query: 162 TGMGGLTVFSDGVQALIEKGHRKITPFFIPYAITNMGSALLAIDLGFMGPNYSISTACAT 221
+G+GG+ + L +KG R+I+PFFIP + N+ S ++I GPN+S+ TACAT
Sbjct: 121 SGIGGIEGIVEAGYTLRDKGPRRISPFFIPGRLINLASGHVSIKHKLRGPNHSVVTACAT 180
Query: 222 SNYCFYAAANHIRRGEADLMLAGGTEAAIIPIGLGGFVACRALS-QRNDDPQTASRPWDK 280
+ AA I G+AD+M+AGGTE+ + I L GF AC+ALS +RNDDP ASRP+D+
Sbjct: 181 GTHAIGDAARLIAFGDADVMVAGGTESPVSRISLAGFAACKALSTERNDDPTAASRPYDE 240
Query: 281 DRDGFVMGEGAGVLVMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIE 340
DRDGFVMGEGAG++V+E LEHA+ RGA I AE +G ++ DA+H+T P G G C+
Sbjct: 241 DRDGFVMGEGAGIVVLEELEHALARGAKIYAEVIGYGMSGDAFHITAPTESGEGAQRCMV 300
Query: 341 SSLEDAGVSPEEVNYINAHATSTLAGDLAEINAIKKVFKN-TTGIKINATKSMIGHCLGA 399
++L+ AG+ P+E++YINAH TST+ D E+ A+++V I +++TKS IGH LGA
Sbjct: 301 AALKRAGIVPDEIDYINAHGTSTM-ADTIELGAVERVVGEAAAKISMSSTKSSIGHLLGA 359
Query: 400 AGGLEAIATVKAITTGWLHPSINQFNPEPSVEFDTVANKKQQHEVNVAISNSFGFGGHNS 459
AG EA+ + AI ++N NP D V +K ++ +++VA+SNSFGFGG N+
Sbjct: 360 AGAAEAVFSTLAIRDNIAPATLNLDNPAAQTRIDLVPHKPRERKIDVALSNSFGFGGTNA 419
Query: 460 VVAFSAF 466
+ +
Sbjct: 420 SLVLRRY 426
|
| >2iwz_A 3-oxoacyl-[acyl-carrier-protein] synthase; mitochondria, mitochondrion, lipid synthesis, fatty acid SYN fatty acid biosynthesis; 1.65A {Homo sapiens} PDB: 2iwy_A 2c9h_A Length = 438 | Back alignment and structure |
|---|
Score = 584 bits (1508), Expect = 0.0
Identities = 160/428 (37%), Positives = 239/428 (55%), Gaps = 13/428 (3%)
Query: 49 KREKDPKKRVVITGMGLVSVFGNDVDAYYNKLLDGESGITMIDRFDASKFPTRFGGQIR- 107
+ +RVVITG+GLV+ G +++L+ GESGI + + P +
Sbjct: 14 EGRSRLHRRVVITGIGLVTPLGVGTHLVWDRLIGGESGIVSLVGEEYKSIPCSVAAYVPR 73
Query: 108 -----GFSAEGYIDGKNDRRLDDCLRYCIVAGKKALEDADLGADISKKIDKERAGVLVGT 162
F+ + ++ + + + I A + A++D+ + D+ GV +G
Sbjct: 74 GSDEGQFNEQNFVSKSDIKSMSSPTIMAIGAAELAMKDSGW--HPQSEADQVATGVAIGM 131
Query: 163 GMGGLTVFSDGVQALIEKGHRKITPFFIPYAITNMGSALLAIDLGFMGPNYSISTACATS 222
GM L V S+ KG+ K++PFF+P + NM + ++I GPN+++STAC T
Sbjct: 132 GMIPLEVVSETALNFQTKGYNKVSPFFVPKILVNMAAGQVSIRYKLKGPNHAVSTACTTG 191
Query: 223 NYCFYAAANHIRRGEADLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWDKDR 282
+ + I G+AD+M+AGGT++ I P+ L GF RALS N DP+ A RP+ R
Sbjct: 192 AHAVGDSFRFIAHGDADVMVAGGTDSCISPLSLAGFSRARALS-TNSDPKLACRPFHPKR 250
Query: 283 DGFVMGEGAGVLVMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESS 342
DGFVMGEGA VLV+E EHA++R A I AE LG ++ DA H+T P +G G C+ ++
Sbjct: 251 DGFVMGEGAAVLVLEEYEHAVQRRARIYAEVLGYGLSGDAGHITAPDPEGEGALRCMAAA 310
Query: 343 LEDAGVSPEEVNYINAHATSTLAGDLAEINAIKKVFKN-TTGIKINATKSMIGHCLGAAG 401
L+DAGV PEE++YINAHATST GD AE AIK +FK+ + +++TK GH LGAAG
Sbjct: 311 LKDAGVQPEEISYINAHATSTPLGDAAENKAIKHLFKDHAYALAVSSTKGATGHLLGAAG 370
Query: 402 GLEAIATVKAITTGWLHPSINQFNPEPSVEFDTVANKKQQHEVN---VAISNSFGFGGHN 458
+EA T A L P++N EP + + V K Q+ + + ++NSFGFGG N
Sbjct: 371 AVEAAFTTLACYYQKLPPTLNLDCSEPEFDLNYVPLKAQEWKTEKRFIGLTNSFGFGGTN 430
Query: 459 SVVAFSAF 466
+ + +
Sbjct: 431 ATLCIAGL 438
|
| >4ewg_A Beta-ketoacyl synthase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, transferase; 2.25A {Burkholderia phymatum} Length = 412 | Back alignment and structure |
|---|
Score = 582 bits (1504), Expect = 0.0
Identities = 131/415 (31%), Positives = 193/415 (46%), Gaps = 9/415 (2%)
Query: 55 KKRVVITGMGLVSVFGNDVDAYYNKLLDGESGITMIDRFDA-SKFPTRFGGQIRGFSAEG 113
KRVVITGMG V+ G+ D L G + + + +D TR + GF+
Sbjct: 5 MKRVVITGMGGVTALGSRWDEIEAALKAGRNAVRRMPDWDYFESLHTRLAAPLPGFAQPA 64
Query: 114 YIDGKNDRRLDDCLRYCIVAGKKALEDADLGADISKKIDKERAGVLVGTGMGGLTVFSDG 173
K R + Y + A + AL DA + I R GV G+ G +
Sbjct: 65 DWPRKKTRSMGRVSMYAVRASELALADAGF--AGDESISDGRMGVAYGSSSGSVEPIRAF 122
Query: 174 VQALIEKGHRKITPFFIPYAITNMGSALLAIDLGFMGPNYSISTACATSNYCFYAAANHI 233
L +T + + + +++ G S+ACA+ + A +I
Sbjct: 123 GTMLESGSMTDVTSNSYVQMMPHTTAVNVSLFWDLKGRIVPTSSACASGSQAIGYAYENI 182
Query: 234 RRGEADLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWDKDRDGFVMGEGAGV 293
G+ LMLAGG E P + F A S RND+P RP+D RDG V+GEGA
Sbjct: 183 AMGKQTLMLAGGAEELSGP-AVAVFDTLYATSTRNDEPHLTPRPFDAKRDGLVVGEGAAT 241
Query: 294 LVMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAGVSPEEV 353
LV+E EHA RGA I AE +G N D HMT P ++ ++ +LEDA + +
Sbjct: 242 LVLEEYEHAKARGATIHAEIVGFGCNSDGAHMTQP--TASTMARAMQLALEDAKLDANAI 299
Query: 354 NYINAHATSTLAGDLAEINAIKKVFKNTTGIKINATKSMIGHCLGAAGGLEAIATVKAIT 413
Y+NAH TST GD+AE A + F + I++ KS +GH LGA G LEA T++ +
Sbjct: 300 AYVNAHGTSTDRGDVAESQATARTFGER--MPISSLKSYVGHTLGACGALEAWWTIEMMK 357
Query: 414 TGWLHPSINQFNPEPS-VEFDTVANKKQQHEVNVAISNSFGFGGHNSVVAFSAFK 467
W P++N +P+ D + + + + +SN+F FGG N+ + F +
Sbjct: 358 RNWYAPTLNLTEVDPACAPLDYIRGEARAIDAEYVMSNNFAFGGINTSLIFRRVR 412
|
| >1tqy_A Beta-ketoacyl synthase/acyl transferase; alpha-beta-alpha-beta-alpha, heterodimer, transferase; 2.00A {Streptomyces coelicolor} SCOP: c.95.1.1 c.95.1.1 Length = 424 | Back alignment and structure |
|---|
Score = 582 bits (1503), Expect = 0.0
Identities = 128/419 (30%), Positives = 202/419 (48%), Gaps = 10/419 (2%)
Query: 55 KKRVVITGMGLVSVFGNDVDAYYNKLLDGESGITMIDRFDASKFPTRFGGQIRGFSAEGY 114
K+RVVITG+G+ + GN ++ L G + I FD S + ++ +
Sbjct: 2 KRRVVITGVGVRAPGGNGTRQFWELLTSGRTATRRISFFDPSPYRSQVAAEADFDPVAEG 61
Query: 115 IDGKNDRRLDDCLRYCIVAGKKALEDADLGADISKKIDKERAGVLVGTGMGGLTVFSDGV 174
+ R+D ++ + ++A + L D +D R GV +G+ + T
Sbjct: 62 FGPRELDRMDRASQFAVACAREAFAASGLDPD---TLDPARVGVSLGSAVAAATSLEREY 118
Query: 175 QALIEKG------HRKITPFFIPYAITNMGSALLAIDLGFMGPNYSISTACATSNYCFYA 228
L + G ++ Y + ++ A +A +G GP +ST C +
Sbjct: 119 LLLSDSGRDWEVDAAWLSRHMFDYLVPSVMPAEVAWAVGAEGPVTMVSTGCTSGLDSVGN 178
Query: 229 AANHIRRGEADLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWDKDRDGFVMG 288
A I G AD+M AG + I PI + F A RA + RNDDP+ ASRP+D RDGFV+
Sbjct: 179 AVRAIEEGSADVMFAGAADTPITPIVVACFDAIRATTARNDDPEHASRPFDGTRDGFVLA 238
Query: 289 EGAGVLVMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAGV 348
EGA + V+E + A+ RGA I AE G A C+AYHMT +ADG ++ I +L+++
Sbjct: 239 EGAAMFVLEDYDSALARGARIHAEISGYATRCNAYHMTGLKADGREMAETIRVALDESRT 298
Query: 349 SPEEVNYINAHATSTLAGDLAEINAIKKVFKN-TTGIKINATKSMIGHCLGAAGGLEAIA 407
+++YINAH + T D E A K+ +++ KSM+GH LGA G LE A
Sbjct: 299 DATDIDYINAHGSGTRQNDRHETAAYKRALGEHARRTPVSSIKSMVGHSLGAIGSLEIAA 358
Query: 408 TVKAITTGWLHPSINQFNPEPSVEFDTVANKKQQHEVNVAISNSFGFGGHNSVVAFSAF 466
V A+ G + P+ N +P + D V + ++ ++ ++ GFGG S +
Sbjct: 359 CVLALEHGVVPPTANLRTSDPECDLDYVPLEARERKLRSVLTVGSGFGGFQSAMVLRDA 417
|
| >1j3n_A 3-oxoacyl-(acyl-carrier protein) synthase II; condensing enzymes, fatty acid elongation, acyl-carrier protein (ACP); HET: CIT; 2.00A {Thermus thermophilus} SCOP: c.95.1.1 c.95.1.1 Length = 408 | Back alignment and structure |
|---|
Score = 581 bits (1499), Expect = 0.0
Identities = 197/409 (48%), Positives = 277/409 (67%), Gaps = 6/409 (1%)
Query: 56 KRVVITGMGLVSVFGNDVDAYYNKLLDGESGITMIDRFDASKFPTRFGGQIRGFSAEGYI 115
+RVV+TG+G ++ G +A++ L G+SG+ I RFDAS P R ++ Y+
Sbjct: 2 RRVVVTGLGALTPIGVGQEAFHKAQLAGKSGVRPITRFDASALPVRIAAEV-DVDPGAYL 60
Query: 116 DGKNDRRLDDCLRYCIVAGKKALEDADLGADISKKIDKERAGVLVGTGMGGLTVFSDGVQ 175
D K RRLD ++Y ++A + ALEDA L + +D ER G LVGTG+GG+ + +
Sbjct: 61 DRKELRRLDRFVQYALIAAQLALEDAGLKPE---DLDPERVGTLVGTGIGGMETWEAQSR 117
Query: 176 ALIEKGHRKITPFFIPYAITNMGSALLAIDLGFMGPNYSISTACATSNYCFYAAANHIRR 235
+E+G +I+PFFIP I NM SA +A+ GF GP+ ++ TACAT +A I+
Sbjct: 118 VFLERGPNRISPFFIPMMIANMASAHIAMRYGFTGPSSTVVTACATGADALGSALRMIQL 177
Query: 236 GEADLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWDKDRDGFVMGEGAGVLV 295
GEADL+LAGGTEAAI P+ +G F RALS RN++P+ ASRP+ RDGFVMGEGAGVLV
Sbjct: 178 GEADLVLAGGTEAAITPMAIGAFAVMRALSTRNEEPEKASRPFTLSRDGFVMGEGAGVLV 237
Query: 296 MESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAGVSPEEVNY 355
+E+ EHA KRGA I AE +G + DA+H+T+P +G G + + +L+DAG++PE+V Y
Sbjct: 238 LEAYEHAKKRGARIYAELVGFGRSADAHHITEPHPEGKGAALAMARALKDAGIAPEQVGY 297
Query: 356 INAHATSTLAGDLAEINAIKKVFKN-TTGIKINATKSMIGHCLGAAGGLEAIATVKAITT 414
INAH TST GD AE+ AIK+VF + + +++TKSMIGH LGAAG +EAIATV+A+
Sbjct: 298 INAHGTSTPVGDRAEVLAIKRVFGDHAKRLMVSSTKSMIGHLLGAAGAVEAIATVQALYH 357
Query: 415 GWLHPSINQFNPEPSVEFDTVANKKQQHEVNVAISNSFGFGGHNSVVAF 463
G + P+IN +P+P ++ D V ++ +V+ A+SNSF FGGHN+V+AF
Sbjct: 358 GVIPPTINLEDPDPELDLDFVPE-PREAKVDYALSNSFAFGGHNAVLAF 405
|
| >2gp6_A 3-oxoacyl-[acyl-carrier-protein] synthase 2; thiolase fold, structural genomics, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} Length = 434 | Back alignment and structure |
|---|
Score = 573 bits (1479), Expect = 0.0
Identities = 134/415 (32%), Positives = 211/415 (50%), Gaps = 10/415 (2%)
Query: 55 KKRVVITGMGLVSVFGNDVDAYYNKLLDGESGITMIDRFDASKF--PTRFGGQIRGFSAE 112
VV+TG+ + + D + + LLD +SGI +D +F P R GG + +
Sbjct: 27 FPYVVVTGIAMTTALATDAETTWKLLLDRQSGIRTLDDPFVEEFDLPVRIGGHLLE-EFD 85
Query: 113 GYIDGKNDRRLDDCLRYCIVAGKKALEDADLGADISKKIDKERAGVLVGTGMGGLTVFSD 172
+ RR+ R V ++ E+A ++D R V +GTG+G
Sbjct: 86 HQLTRIELRRMGYLQRMSTVLSRRLWENAGS-----PEVDTNRLMVSIGTGLGSAEELVF 140
Query: 173 GVQALIEKGHRKITPFFIPYAITNMGSALLAIDLGFMGPNYSISTACATSNYCFYAAANH 232
+ +G + ++P + + N +A + ++ + +ACA+ A
Sbjct: 141 SYDDMRARGMKAVSPLTVQKYMPNGAAAAVGLERHAKAGVMTPVSACASGAEAIARAWQQ 200
Query: 233 IRRGEADLMLAGGTEAAIIPIGLGGFVACR-ALSQRNDDPQTASRPWDKDRDGFVMGEGA 291
I GEAD + GG E I + + GF R +S NDDP A RP+D+DRDGFV GEG
Sbjct: 201 IVLGEADAAICGGVETRIEAVPIAGFAQMRIVMSTNNDDPAGACRPFDRDRDGFVFGEGG 260
Query: 292 GVLVMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAGVSPE 351
+L++E+ EHA RGA I+A +G ++ D +HM P +G I +++ AG++P
Sbjct: 261 ALLLIETEEHAKARGANILARIMGASITSDGFHMVAPDPNGERAGHAITRAIQLAGLAPG 320
Query: 352 EVNYINAHATSTLAGDLAEINAIKKVFKNTTGIKINATKSMIGHCLGAAGGLEAIATVKA 411
+++++NAHAT T GDLAE AI + A KS +GH +GA G +E+I TV A
Sbjct: 321 DIDHVNAHATGTQVGDLAEGRAINNALGGNR-PAVYAPKSALGHSVGAVGAVESILTVLA 379
Query: 412 ITTGWLHPSINQFNPEPSVEFDTVANKKQQHEVNVAISNSFGFGGHNSVVAFSAF 466
+ + P++N N +P ++ D VA + + AI+NSFGFGGHN +AF +
Sbjct: 380 LRDQVIPPTLNLVNLDPEIDLDVVAGEPRPGNYRYAINNSFGFGGHNVAIAFGRY 434
|
| >1tqy_B Actinorhodin polyketide putative beta-ketoacyl SY; alpha-beta-alpha-beta-alpha, heterodimer, transferase; 2.00A {Streptomyces coelicolor} SCOP: c.95.1.1 c.95.1.1 Length = 415 | Back alignment and structure |
|---|
Score = 570 bits (1472), Expect = 0.0
Identities = 110/421 (26%), Positives = 179/421 (42%), Gaps = 10/421 (2%)
Query: 49 KREKDPKKRVVITGMGLVSVFGNDVDAYYNKLLDGESGITMIDRFDASKFPTRFGGQIRG 108
+ D K V+ITG+G+V+ G + Y++ +LDG G+ + RFD S++P GQI
Sbjct: 2 DYKDDDDKSVLITGVGVVAPNGLGLAPYWSAVLDGRHGLGPVTRFDVSRYPATLAGQIDD 61
Query: 109 FSAEGYIDGKNDRRLDDCLRYCIVAGKKALEDADLGADISKKIDKERAGVLVGTGMGGLT 168
F A +I G+ + D R + A AL+DA + + GV+ GG
Sbjct: 62 FHAPDHIPGRLLPQTDPSTRLALTAADWALQDAKADPE---SLTDYDMGVVTANACGGFD 118
Query: 169 VFSDGVQALIEKGHRKITPFFIPYAITNMGSALLAIDLGFMGPNYSISTACATSNYCFYA 228
+ L +G + ++ + + + ++I G GP+ ++ A
Sbjct: 119 FTHREFRKLWSEGPKSVSVYESFAWFYAVNTGQISIRHGMRGPSSALVAEQAGGLDALGH 178
Query: 229 AANHIRRGEADLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWDKDRDGFVMG 288
A IRRG L+++GG ++A+ P G +A +S D P A P+D+ G+V G
Sbjct: 179 ARRTIRRG-TPLVVSGGVDSALDPWGWVSQIASGRISTATD-PDRAYLPFDERAAGYVPG 236
Query: 289 EGAGVLVMESLEHAMKRGAPII-AEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAG 347
EG +LV+E A RG E G A D + G+ I +L DAG
Sbjct: 237 EGGAILVLEDSAAAEARGRHDAYGELAGCASTFDPAPGS---GRPAGLERAIRLALNDAG 293
Query: 348 VSPEEVNYINAHATSTLAGDLAEINAIKKVFKNTTGIKINATKSMIGHCLGAAGGLEAIA 407
PE+V+ + A D AE AI +VF G+ + K+ G G L+ +
Sbjct: 294 TGPEDVDVVFADGAGVPELDAAEARAIGRVFGRE-GVPVTVPKTTTGRLYSGGGPLDVVT 352
Query: 408 TVKAITTGWLHPSINQFNPEPSVEFDTVANKKQQHEVNVAISNSFGFGGHNSVVAFSAFK 467
+ ++ G + P+ + D V + + A+ + G G NS F
Sbjct: 353 ALMSLREGVIAPTAGVTSVPREYGIDLVLGEPRSTAPRTALVLARGRWGFNSAAVLRRFA 412
Query: 468 P 468
P
Sbjct: 413 P 413
|
| >2ix4_A 3-oxoacyl-[acyl-carrier-protein] synthase; beta-ketoacyl-(acyl carrier protein) synthase, lipid metabol condensing enzyme; 1.95A {Arabidopsis thaliana} SCOP: c.95.1.1 c.95.1.1 PDB: 1w0i_A Length = 431 | Back alignment and structure |
|---|
Score = 557 bits (1439), Expect = 0.0
Identities = 162/431 (37%), Positives = 246/431 (57%), Gaps = 24/431 (5%)
Query: 56 KRVVITGMGLVSVFGNDVDAYYNKLLDGESGITMIDRFDAS--------------KFPTR 101
+RVV+TG+G+V+ G V+ + +L+DGE GI + D + ++
Sbjct: 1 RRVVVTGLGMVTPLGRGVETTWRRLIDGECGIRGLTLDDLKMKSFDEETKLYTFDQLSSK 60
Query: 102 FGGQIRGFSAEGYIDGKND---RRLDDCLRYCIVAGKKALEDADLGADISKKIDKERAGV 158
+ S G D + + + + Y + A +AL DA +++ +KER GV
Sbjct: 61 VAAFVPYGSNPGEFDEALWLNSKAVANFIGYAVCAADEALRDA--EWLPTEEEEKERTGV 118
Query: 159 LVGTGMGGLTVFSDGVQALIEKGHRKITPFFIPYAITNMGSALLAIDLGFMGPNYSISTA 218
+G G+G + + Q + EK R+++PFFIP + NM S +++ GF GPN++ TA
Sbjct: 119 SIGGGIGSICDIVEAAQLICEKRLRRLSPFFIPKILVNMASGHVSMKYGFQGPNHAAVTA 178
Query: 219 CATSNYCFYAAANHIRRGEADLMLAGGTEAAIIPIGLGGFVACRALSQR-NDDPQTASRP 277
CAT + A I+ G+AD+M+AGGTE++I + + GF RALS + N PQ ASRP
Sbjct: 179 CATGAHSIGDATRMIQFGDADVMVAGGTESSIDALSVAGFSRSRALSTKFNSSPQEASRP 238
Query: 278 WDKDRDGFVMGEGAGVLVMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSS 337
+D DRDGFV+GEG+GV+V+E EHA +RGA I AE G ++ DA+H+T P DG G
Sbjct: 239 FDCDRDGFVIGEGSGVIVLEEYEHAKRRGAKIYAELCGYGMSGDAHHITQPPEDGKGAVL 298
Query: 338 CIESSLEDAGVSPEEVNYINAHATSTLAGDLAEINAIKKVFKN---TTGIKINATKSMIG 394
+ +L +G+ P +++Y+NAHATST GD E AIK VF + + ++TK G
Sbjct: 299 AMTRALRQSGLCPNQIDYVNAHATSTPIGDAVEARAIKTVFSEHATSGTLAFSSTKGATG 358
Query: 395 HCLGAAGGLEAIATVKAITTGWLHPSINQFNPEPSVEFDTVA-NKKQQHEVNVAISNSFG 453
H LGAAG +EAI ++ AI G ++N NP+P + + ++ V A+SNSFG
Sbjct: 359 HLLGAAGAVEAIFSILAIHHGVAPMTLNVKNPDPIFDKRFMPLTTSKKMLVRTAMSNSFG 418
Query: 454 FGGHNSVVAFS 464
FGG N+ + F+
Sbjct: 419 FGGTNASLLFA 429
|
| >3mqd_A Beta-ketoacyl synthase; ssgcid, ALS collaborative crystallography, beta-ketoacyl SYN brucella melitensis, fragments of LIFE; HET: 3MQ; 1.25A {Brucella melitensis biovar abortus} PDB: 3lrf_A* 3u0e_A* 3u0f_A* Length = 428 | Back alignment and structure |
|---|
Score = 543 bits (1401), Expect = 0.0
Identities = 148/427 (34%), Positives = 220/427 (51%), Gaps = 11/427 (2%)
Query: 43 STKSAPKREKDPKKRVVITGMGLVSVFGNDVDAYYNKLLDGESGITMIDRFDASKFPTRF 102
T A + +RVV+TGMG+VS G++ + L + +SGI+ + + F +
Sbjct: 10 GTLEAQTQGPGSMRRVVVTGMGIVSSIGSNTEEVTASLREAKSGISRAEEYAELGFRCQV 69
Query: 103 GGQIRGFSAEGYIDGKNDRRLDDCLRYCIVAGKKALEDADLGADISKKIDKERAGVLVGT 162
G E +D + R + +A +A+ DA L + ++ ER G+++G+
Sbjct: 70 HG-APDIDIESLVDRRAMRFHGRGTAWNHIAMDQAIADAGLTEE---EVSNERTGIIMGS 125
Query: 163 GMGGLTVFSDGVQALIEKGHRKITPFFIPYAITNMGSALLAIDLGFMGPNYSISTACATS 222
G D EKG +++ PF +P A+++ SA LA G NYSIS+ACATS
Sbjct: 126 GGPSTRTIVDSADITREKGPKRVGPFAVPKAMSSTASATLATFFKIKGINYSISSACATS 185
Query: 223 NYCFYAAANHIRRGEADLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWDKDR 282
N+C A I+ G+ D M AGG E + + S+ ND P TASR +DK+R
Sbjct: 186 NHCIGNAYEMIQYGKQDRMFAGGCEDLDWTLSVLFDAMGAMSSKYNDTPSTASRAYDKNR 245
Query: 283 DGFVMGEGAGVLVMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESS 342
DGFV+ GAGVLV+E LE A+ RGA I E +G D Y M P G G C++ +
Sbjct: 246 DGFVIAGGAGVLVLEDLETALARGAKIYGEIVGYGATSDGYDMVAP--SGEGAIRCMKMA 303
Query: 343 LEDAGVSPEEVNYINAHATSTLAGDLAEINAIKKVF-KNTTGIKINATKSMIGHCLGAAG 401
L +++YIN HATST AGD EI AI+++F I ATKS+ GH LGA G
Sbjct: 304 LSTV---TSKIDYINPHATSTPAGDAPEIEAIRQIFGAGDVCPPIAATKSLTGHSLGATG 360
Query: 402 GLEAIATVKAITTGWLHPSINQFNPEPSVE-FDTVANKKQQHEVNVAISNSFGFGGHNSV 460
EAI ++ + ++ S + +P+ V + ++N +SNSFGFGG N+
Sbjct: 361 VQEAIYSLLMMQNNFICESAHIEELDPAFADMPIVRKRIDNVQLNTVLSNSFGFGGTNAT 420
Query: 461 VAFSAFK 467
+ F ++
Sbjct: 421 LVFQRYQ 427
|
| >2vba_A 3-oxoacyl-[acyl-carrier-protein] synthase 1; cytoplasm, antibiotic, transferase, amino-thiazole, acyltransferase, lipid synthesis; HET: P4T; 1.36A {Escherichia coli} SCOP: c.95.1.1 c.95.1.1 PDB: 1fj4_A* 1g5x_A 2aq7_A* 1fj8_A* 2aqb_A 2bui_A 2buh_A 2vb7_A* 2vb8_A 2vb9_A* 1h4f_A 1dd8_A 2cdh_A 2bz4_A 2byz_A 2bz3_A* 2byy_A* 1f91_A* 2cf2_A 2byw_A ... Length = 406 | Back alignment and structure |
|---|
Score = 533 bits (1376), Expect = 0.0
Identities = 146/414 (35%), Positives = 215/414 (51%), Gaps = 12/414 (2%)
Query: 56 KRVVITGMGLVSVFGNDVDAYYNKLLDGESGITMIDRFDASKFPTRFGGQIRGFSAEGYI 115
KR VITG+G+VS GN+ L +G SGIT S + G ++ G I
Sbjct: 2 KRAVITGLGIVSSIGNNQQEVLASLREGRSGITFSQELKDSGMRSHVWGNVK-LDTTGLI 60
Query: 116 DGKNDRRLDDCLRYCIVAGKKALEDADLGADISKKIDKERAGVLVGTGMGGLTVFSDGVQ 175
D K R + D Y ++ ++A+ DA L + R G++ G+G G G
Sbjct: 61 DRKVVRFMSDASIYAFLSMEQAIADAGL--SPEAYQNNPRVGLIAGSGGGSPRFQVFGAD 118
Query: 176 AL-IEKGHRKITPFFIPYAITNMGSALLAIDLGFMGPNYSISTACATSNYCFYAAANHIR 234
A+ +G + + P+ + A+ + SA LA G NYSIS+ACATS +C A I+
Sbjct: 119 AMRGPRGLKAVGPYVVTKAMASGVSACLATPFKIHGVNYSISSACATSAHCIGNAVEQIQ 178
Query: 235 RGEADLMLAGGTEAAIIPIGLGGFVACRALSQR-NDDPQTASRPWDKDRDGFVMGEGAGV 293
G+ D++ AGG E + F A ALS + ND P+ ASR +D RDGFV+ G G+
Sbjct: 179 LGKQDIVFAGGGEELCWEMA-CEFDAMGALSTKYNDTPEKASRTYDAHRDGFVIAGGGGM 237
Query: 294 LVMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAGVSPEEV 353
+V+E LEHA+ RGA I AE +G D M P G G C++ ++ +
Sbjct: 238 VVVEELEHALARGAHIYAEIVGYGATSDGADMVAP--SGEGAVRCMKMAMHGVD---TPI 292
Query: 354 NYINAHATSTLAGDLAEINAIKKVFKNTTGIKINATKSMIGHCLGAAGGLEAIATVKAIT 413
+Y+N+H TST GD+ E+ AI++VF + + I+ATK+M GH LGAAG EAI ++ +
Sbjct: 293 DYLNSHGTSTPVGDVKELAAIREVFGDKS-PAISATKAMTGHSLGAAGVQEAIYSLLMLE 351
Query: 414 TGWLHPSINQFNPEPSVEFDTVANKKQQHEVNVAISNSFGFGGHNSVVAFSAFK 467
G++ PSIN + + + E+ +SNSFGFGG N+ + K
Sbjct: 352 HGFIAPSINIEELDEQAAGLNIVTETTDRELTTVMSNSFGFGGTNATLVMRKLK 405
|
| >2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 1688 | Back alignment and structure |
|---|
Score = 413 bits (1062), Expect = e-130
Identities = 86/469 (18%), Positives = 154/469 (32%), Gaps = 58/469 (12%)
Query: 36 VSFITASSTKSAPKREKDPKKRVVITGMGLVSVFGNDVDAYYNKLLDGESGITMIDRFDA 95
+ AS + + + K V I ++ + G T+ A
Sbjct: 932 LEPFEASKETAEQFKHQHGDK-VDIF----------EIPETGEYSVKLLKGATLYI-PKA 979
Query: 96 SKFPTRFGGQI-RGFSAEGY-IDGKNDRRLDDCLRYCIVAGKKALEDADL--GADISKKI 151
+F GQI G++A+ Y I ++D + +V+ +A + + ++ K +
Sbjct: 980 LRFDRLVAGQIPTGWNAKTYGISDDIISQVDPITLFVLVSVVEAFIASGITDPYEMYKYV 1039
Query: 152 DKERAGVLVGTGMGGLTVFSDGVQALIEKGHRKITPFFIPYAITNMGSALLAIDLGFMGP 211
G G+GMGG++ + + + I M + + + + GP
Sbjct: 1040 HVSEVGNCSGSGMGGVSALRGMFKDRFKDEPVQ-NDILQESFINTMSAWVNMLLISSSGP 1098
Query: 212 NYSISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAIIPIGLGGFVACRALSQRNDD- 270
+ ACATS I G+A + + GG + G F +A S ++
Sbjct: 1099 IKTPVGACATSVESVDIGVETILSGKARICIVGGYDD-FQEEGSFEFGNMKATSNTLEEF 1157
Query: 271 -----PQTASRPWDKDRDGFVMGEGAGVLVMESLEHAMKRGAPIIAEYLGGAVNCDAYHM 325
P SRP R+GF+ +GAG+ ++ + A+K G PI A D
Sbjct: 1158 EHGRTPAEMSRPATTTRNGFMEAQGAGIQIIMQADLALKMGVPIYGIVAMAATATDKIGR 1217
Query: 326 TDPRADGLGVSS---CIESSLEDAGV---------------------SPEEVNYINAHAT 361
+ P A G G+ + SS++ A E+ + A
Sbjct: 1218 SVP-APGKGILTTAREHHSSVKYASPNLNMKYRKRQLVTREAQIKDWVENELEALKLEAE 1276
Query: 362 STLAGDLAEINAIKKVF-KNTTGIKINATKSMIGHCLGAAGGLEAIATVKAITTGWLHPS 420
+ D E + N ++ A + G+ A T G
Sbjct: 1277 EIPSEDQNEFLLERTREIHNEAESQLRAAQQQWGNDFYKRDPRIAPLRGALATYGLTIDD 1336
Query: 421 INQFNPEPSVEFDTVANKKQQHEVNVAISNSFGFGG--HNSVVAFSAFK 467
+ + + T AN K + I+ G + V K
Sbjct: 1337 LGVASFHGT---STKANDKNESA---TINEMMKHLGRSEGNPVIGVFQK 1379
|
| >2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 1688 | Back alignment and structure |
|---|
Score = 199 bits (508), Expect = 7e-56
Identities = 52/350 (14%), Positives = 97/350 (27%), Gaps = 63/350 (18%)
Query: 136 KAL----EDADLGAD---ISKKIDKERAG-VLVGTGMGGLTVFSDGVQALIEKGHRKITP 187
KA E+ + G +S+ R G + G G+Q +++
Sbjct: 1148 KATSNTLEEFEHGRTPAEMSRPATTTRNGFME---AQGA------GIQIIMQADLAL--- 1195
Query: 188 FFIPYAITNMGSALLAIDLGFMGPNYSISTACATSNYCFYAAANHI-----RRGEADLML 242
MG + I +G
Sbjct: 1196 --------KMGVPIYGIVAM----------------AATATDKIGRSVPAPGKGILTTAR 1231
Query: 243 AGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWDKDRDGFVMGEGAGVLVMESLEHA 302
+ L R L R + W ++ + E + + E
Sbjct: 1232 EHHSSVKYASPNLNMKYRKRQLVTREAQIK----DWVENELEALKLEAEEIPSEDQNEFL 1287
Query: 303 MKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAGVSPEEVNYINAHATS 362
++R I E + + + +L G++ +++ + H TS
Sbjct: 1288 LERTREIHNEAESQLRAA-QQQWGNDFYKRDPRIAPLRGALATYGLTIDDLGVASFHGTS 1346
Query: 363 TLAGDLAEINAIKKVFKNTTG-----IKINATKSMIGHCLGAAGGLEAIATVKAITTGWL 417
T A D E I ++ K+ + K + GH GAAG ++ + +G +
Sbjct: 1347 TKANDKNESATINEMMKHLGRSEGNPVIGVFQKFLTGHPKGAAGAWMMNGALQILNSGII 1406
Query: 418 HPSINQFNPEPSVE----FDTVANKKQQHEVNVAISNSFGFGGHNSVVAF 463
+ N N + +E + + V SFGFG
Sbjct: 1407 PGNRNADNVDKILEQFEYVLYPSKTLKTDGVRAVSITSFGFGQKGGQAIV 1456
|
| >2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; 3.1A {Thermomyces lanuginosus} PDB: 2uvb_A* Length = 1878 | Back alignment and structure |
|---|
Score = 338 bits (869), Expect = e-104
Identities = 72/358 (20%), Positives = 124/358 (34%), Gaps = 25/358 (6%)
Query: 72 DVDAYYNKLLDGESGITMIDRFDASKFPTRFGGQI-RGFSAEGY-IDGKNDRRLDDCLRY 129
++ + G T + A +F GQI G+ A Y + +++D Y
Sbjct: 1131 EIPETGQYTVRLRKGAT-LLIPKALQFDRLVAGQIPTGWDARRYGVPEDIIQQVDPVTLY 1189
Query: 130 CIVAGKKALEDADL--GADISKKIDKERAGVLVGTGMGGLTVFSDGVQALIEKGHRKITP 187
+V+ +AL + + + K + G +G+G+GG + +
Sbjct: 1190 VLVSVAEALLSSGITDPYEFYKYVHLSEVGNCIGSGVGGTSALRGMYKDRYLDK-PVQKD 1248
Query: 188 FFIPYAITNMGSALLAIDLGFMGPNYSISTACATSNYCFYAAANHIRRGEADLMLAGG-- 245
+ M + + + L GP + ACAT+ + I +G+A + L GG
Sbjct: 1249 ILQESFVNTMAAWVNMLLLSSTGPIKTPVGACATAVESLDVGYDTIMQGKARVCLVGGFD 1308
Query: 246 ---TEAAIIPIGLGGFVACRALSQRNDDPQTASRPWDKDRDGFVMGEGAGVLVMESLEHA 302
E + +G + R +P SRP R+GF+ +G GV V+ + + A
Sbjct: 1309 DFQEEGSYEFANMGATSNAKEEFARGREPGEMSRPTSTTRNGFMESQGCGVQVIMTAQLA 1368
Query: 303 MKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAGVSPEEVNY------- 355
++ G PI + D + P A G GV + + ++ Y
Sbjct: 1369 LEMGVPIYGIVAMTSTATDKIGRSVP-APGQGVLTTAREKSGNFPSPLLDIKYRRRQLEL 1427
Query: 356 ----INAHATSTLAGDLAEINAIKKVFKNTTGIKINA--TKSMIGHCLGAAGGLEAIA 407
I S E+ AIK G + H A EA A
Sbjct: 1428 RRQQIKQWKESEYLYLQEEVAAIKSQRSEEDGPFDETAYLRERTEHIEREARRQEAEA 1485
|
| >2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; 3.1A {Thermomyces lanuginosus} PDB: 2uvb_A* Length = 1878 | Back alignment and structure |
|---|
Score = 157 bits (397), Expect = 3e-41
Identities = 31/182 (17%), Positives = 61/182 (33%), Gaps = 10/182 (5%)
Query: 290 GAGVLVMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAGVS 349
+ + +R I E + + + +L G++
Sbjct: 1455 SEEDGPFDETAYLRERTEHIEREARRQEAEAQTSFGNEFWRRD-SRIAPLRGALATWGLT 1513
Query: 350 PEEVNYINAHATSTLAGDLAEINAIKKVFKNTTG-----IKINATKSMIGHCLGAAGGLE 404
+++ + H TST+A D E + I + K+ + K + GH GAAG
Sbjct: 1514 IDDLGVASFHGTSTVANDKNESDVICQQLKHLGRTKGNAVLGIFQKYLTGHPKGAAGAWM 1573
Query: 405 AIATVKAITTGWLHPSINQFNPEPSVE----FDTVANKKQQHEVNVAISNSFGFGGHNSV 460
++ + TG + + N N + +E + + + SFGFG +
Sbjct: 1574 LNGCLQVLNTGIVPGNRNADNVDKVMEQFDYIVYPSRSIKTDGIKAFSVTSFGFGQKGAQ 1633
Query: 461 VA 462
Sbjct: 1634 AI 1635
|
| >2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_A* 3hmj_A* Length = 1887 | Back alignment and structure |
|---|
Score = 309 bits (794), Expect = 8e-94
Identities = 77/428 (17%), Positives = 139/428 (32%), Gaps = 42/428 (9%)
Query: 72 DVDAYYNKLLDGESGITMIDRFDASKFPTRFGGQI-RGFSAEGY-IDGKNDRRLDDCLRY 129
++ + G T+ A +F GQI G++A+ Y I ++D +
Sbjct: 1156 EIPETGEYSVKLLKGATLYI-PKALRFDRLVAGQIPTGWNAKTYGISDDIISQVDPITLF 1214
Query: 130 CIVAGKKALEDADL--GADISKKIDKERAGVLVGTGMGGLTVFSDGVQALIEKGHRKITP 187
+V+ +A + + ++ K + G G+GMGG++ + +
Sbjct: 1215 VLVSVVEAFIASGITDPYEMYKYVHVSEVGNCSGSGMGGVSALRGMFKDRFKDE-PVQND 1273
Query: 188 FFIPYAITNMGSALLAIDLGFMGPNYSISTACATSNYCFYAAANHIRRGEADLMLAGGTE 247
I M + + + + GP + ACATS I G+A + + GG +
Sbjct: 1274 ILQESFINTMSAWVNMLLISSSGPIKTPVGACATSVESVDIGVETILSGKARICIVGGYD 1333
Query: 248 AAIIPIGLGGFVACRALSQRNDD------PQTASRPWDKDRDGFVMGEGAGVLVMESLEH 301
G F +A S ++ P SRP R+GF+ +GAG+ ++ +
Sbjct: 1334 D-FQEEGSFEFGNMKATSNTLEEFEHGRTPAEMSRPATTTRNGFMEAQGAGIQIIMQADL 1392
Query: 302 AMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAGVS------------ 349
A+K G PI A D + P A G G+ + +
Sbjct: 1393 ALKMGVPIYGIVAMAATATDKIGRSVP-APGKGILTTAREHHSSVKYASPNLNMKYRKRQ 1451
Query: 350 ------------PEEVNYINAHATSTLAGDLAEINAIKKVF-KNTTGIKINATKSMIGHC 396
E+ + A + D E + N ++ A + G+
Sbjct: 1452 LVTREAQIKDWVENELEALKLEAEEIPSEDQNEFLLERTREIHNEAESQLRAAQQQWGND 1511
Query: 397 LGAAGGLEAIATVKAITTGWLHPSINQFNPEPSVEFDTVANKKQQHEVNVAISNSFGFGG 456
A T G + + + T AN K + + G
Sbjct: 1512 FYKRDPRIAPLRGALATYGLTIDDLGVASFHGT---STKANDKNESATINEMMKHLGRSE 1568
Query: 457 HNSVVAFS 464
N V+
Sbjct: 1569 GNPVIGVF 1576
|
| >2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_A* 3hmj_A* Length = 1887 | Back alignment and structure |
|---|
Score = 159 bits (404), Expect = 4e-42
Identities = 38/238 (15%), Positives = 72/238 (30%), Gaps = 14/238 (5%)
Query: 235 RGEADLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWDKDRDGFVMGEGAGVL 294
+G + L R L R + W ++ + E +
Sbjct: 1423 KGILTTAREHHSSVKYASPNLNMKYRKRQLVTREAQ----IKDWVENELEALKLEAEEIP 1478
Query: 295 VMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAGVSPEEVN 354
+ E ++R I E + + + +L G++ +++
Sbjct: 1479 SEDQNEFLLERTREIHNEAESQLRAA-QQQWGNDFYKRDPRIAPLRGALATYGLTIDDLG 1537
Query: 355 YINAHATSTLAGDLAEINAIKKVF-----KNTTGIKINATKSMIGHCLGAAGGLEAIATV 409
+ H TST A D E I ++ + K + GH GAAG +
Sbjct: 1538 VASFHGTSTKANDKNESATINEMMKHLGRSEGNPVIGVFQKFLTGHPKGAAGAWMMNGAL 1597
Query: 410 KAITTGWLHPSINQFNPEPSVE----FDTVANKKQQHEVNVAISNSFGFGGHNSVVAF 463
+ + +G + + N N + +E + + V SFGFG
Sbjct: 1598 QILNSGIIPGNRNADNVDKILEQFEYVLYPSKTLKTDGVRAVSITSFGFGQKGGQAIV 1655
|
| >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* Length = 2512 | Back alignment and structure |
|---|
Score = 156 bits (395), Expect = 6e-41
Identities = 80/323 (24%), Positives = 121/323 (37%), Gaps = 32/323 (9%)
Query: 154 ERAGV----LVGTGMGGLTVF----SDGVQALIEKGHRKITPFFIPYAITNMGSALLAID 205
G+ L GT G V+ S + + + + + M + L+
Sbjct: 91 VDGGINPASLRGTSTG---VWVGVSSSDASEALSRDPETLVGYSMIGCQRAMMANRLSFF 147
Query: 206 LGFMGPNYSISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAIIPIGLGGFVACRALS 265
F GP+ +I TAC++S +A IR GE + GG + P F+ LS
Sbjct: 148 FDFKGPSITIDTACSSSLLALQSAYQAIRGGECSAAVVGGLNVLLKPNSSLQFMKLGMLS 207
Query: 266 QRNDDPQTASRPWDKDRDGFVMGEGAGVLVMESLEHAMKRGAPIIAEYLGGAVNCDAYH- 324
R +D + G+ E +++ A +R + A L N D
Sbjct: 208 -----QDGTCRSFDAEGTGYCRAEAVVAVLLTKKSLA-RR---VYATILNAGTNTDGSKE 258
Query: 325 --MTDPRADGLGVSSCIESSLEDAGVSPEEVNYINAHATSTLAGDLAEINAIKKVF--KN 380
+T P G I S AG PE + YI AH T T GD E+N I
Sbjct: 259 QGVTFP--SGDVQEQLIRSLYAPAGPDPESLEYIEAHGTGTKVGDPQELNGIVNALCATR 316
Query: 381 TTGIKINATKSMIGHCLGAAGGLEAIATVKAITTGWLHPSINQFNPEPSVEFDT-----V 435
+ I +TKS +GH A+G I + ++ G P+++ P P + V
Sbjct: 317 REPLLIGSTKSNMGHPEPASGVAALIKVLLSLEHGVWAPNLHYHTPNPEIPALQDGRLQV 376
Query: 436 ANKKQQHEVNVAISNSFGFGGHN 458
++ NSFGFGG N
Sbjct: 377 VDRPLPIRGGNVGINSFGFGGSN 399
|
| >2hg4_A DEBS, 6-deoxyerythronolide B synthase; ketosynthase, acyltransferase, module 5, transferase; 2.73A {Saccharopolyspora erythraea} Length = 917 | Back alignment and structure |
|---|
Score = 118 bits (298), Expect = 2e-28
Identities = 95/329 (28%), Positives = 140/329 (42%), Gaps = 36/329 (10%)
Query: 154 ERAGVLVGTGMGGLT-VFSDGVQALIEKGHRKITPFFIPYAIT-NMGSAL---LAIDLGF 208
ERAG + G T VF+ + + Y T S +A LG
Sbjct: 129 ERAGHDPVSLRGSATGVFTGVGTVDYGPRPDEAPDEVLGYVGTGTASSVASGRVAYCLGL 188
Query: 209 MGPNYSISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAIIPIGLGGFVACRALSQRN 268
GP ++ TAC++ + A +RR E L LAGG P F + L+
Sbjct: 189 EGPAMTVDTACSSGLTALHLAMESLRRDECGLALAGGVTVMSSPGAFTEFRSQGGLA--- 245
Query: 269 DDPQTASRPWDKDRDGFVMGEGAGVLVMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDP 328
+P+ K DGF + EGAGVLV++ L A + G P++A G AVN D
Sbjct: 246 --ADGRCKPFSKAADGFGLAEGAGVLVLQRLSAARREGRPVLAVLRGSAVNQDG------ 297
Query: 329 RADGL----GVS--SCIESSLEDAGVSPEEVNYINAHATSTLAGDLAEINAIKKVF---- 378
++GL G + I +LE+AGV +V+Y+ AH T T GD E++A+ +
Sbjct: 298 ASNGLTAPSGPAQQRVIRRALENAGVRAGDVDYVEAHGTGTRLGDPIEVHALLSTYGAER 357
Query: 379 KNTTGIKINATKSMIGHCLGAAGGLEAIATVKAITTGWLHPSINQFNPEPSVEFDTVANK 438
+ I + KS IGH AAG + V A+ G + +++ P P +E+D A
Sbjct: 358 DPDDPLWIGSVKSNIGHTQAAAGVAGVMKAVLALRHGEMPRTLHFDEPSPQIEWDLGAVS 417
Query: 439 KQQHEVN---------VAISNSFGFGGHN 458
+ +S SFG G N
Sbjct: 418 VVSQARSWPAGERPRRAGVS-SFGISGTN 445
|
| >3hhd_A Fatty acid synthase; transferase, multienzyme, megasynthase, fatty acid synthesis, acetylation, cytoplasm, fatty acid biosynthesis, hydrolase; 2.15A {Homo sapiens} PDB: 2jfk_A* 2jfd_A Length = 965 | Back alignment and structure |
|---|
Score = 117 bits (296), Expect = 3e-28
Identities = 82/334 (24%), Positives = 131/334 (39%), Gaps = 54/334 (16%)
Query: 154 ERAGV----LVGTGMGGLTVF-----SDGVQALIEKGHRKITPFFIPYAIT-NMGSAL-- 201
G+ L GT G V+ S+ +AL + Y++ + +
Sbjct: 93 VDGGINPDSLRGTHTG---VWVGVSGSETSEALSRDPET-----LVGYSMVGCQRAMMAN 144
Query: 202 -LAIDLGFMGPNYSISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAIIPIGLGGFVA 260
L+ F GP+ ++ TAC++S A I G+ + GG + P F+
Sbjct: 145 RLSFFFDFRGPSIALDTACSSSLMALQNAYQAIHSGQCPAAIVGGINVLLKPNTSVQFLR 204
Query: 261 CRALSQRNDDPQTASRPWDKDRDGFVMGEGAGVLVMESLEHAMKRGAPIIAEYLGGAVNC 320
LS P+ + +D +G+ EG +++ A +R + A L N
Sbjct: 205 LGMLS-----PEGTCKAFDTAGNGYCRSEGVVAVLLTKKSLA-RR---VYATILNAGTNT 255
Query: 321 DAYHMTDPRADGL----GVS--SCIESSLEDAGVSPEEVNYINAHATSTLAGDLAEINAI 374
D + + G+ G I S + AGV+PE YI AH T T GD E+N I
Sbjct: 256 DGF-----KEQGVTFPSGDIQEQLIRSLYQSAGVAPESFEYIEAHGTGTKVGDPQELNGI 310
Query: 375 KKVF--KNTTGIKINATKSMIGHCLGAAG--GLEAIATVKAITTGWLHPSINQFNPEPSV 430
+ + I +TKS +GH A+G L + ++ G P+++ +P P +
Sbjct: 311 TRALCATRQEPLLIGSTKSNMGHPEPASGLAAL--AKVLLSLEHGLWAPNLHFHSPNPEI 368
Query: 431 EFD------TVANKKQQHEVNVAISNSFGFGGHN 458
V NV I+ SFGFGG N
Sbjct: 369 PALLDGRLQVVDQPLPVRGGNVGIN-SFGFGGSN 401
|
| >2qo3_A Eryaii erythromycin polyketide synthase modules 3; ketosynthase, acyltransferase, phosphopantetheine, transfera; 2.59A {Saccharopolyspora erythraea} Length = 915 | Back alignment and structure |
|---|
Score = 117 bits (295), Expect = 4e-28
Identities = 84/329 (25%), Positives = 136/329 (41%), Gaps = 37/329 (11%)
Query: 154 ERAGVLVGTGMGGLT-VFSDGVQALIEKGHRKITPFFIPYAIT-NMGSAL---LAIDLGF 208
E AG+ + G T VF GV Y++T + ++ +G
Sbjct: 108 ENAGIDPHSLRGTATGVFL-GVAKFGYGEDTAAAEDVEGYSVTGVAPAVASGRISYTMGL 166
Query: 209 MGPNYSISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAIIPIGLGGFVACRALSQRN 268
GP+ S+ TAC++S + A +R+GE+ + + GG P F RAL+
Sbjct: 167 EGPSISVDTACSSSLVALHLAVESLRKGESSMAVVGGAAVMATPGVFVDFSRQRALA--- 223
Query: 269 DDPQTASRPWDKDRDGFVMGEGAGVLVMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDP 328
S+ + DGF EG ++++E L A + G ++A G A+N D
Sbjct: 224 --ADGRSKAFGAGADGFGFSEGVTLVLLERLSEARRNGHEVLAVVRGSALNQDG------ 275
Query: 329 RADGL----GVS--SCIESSLEDAGVSPEEVNYINAHATSTLAGDLAEINAIKKVF---- 378
++GL G + I +LE G+ P +V+ + AH T T GD E NA+ +
Sbjct: 276 ASNGLSAPSGPAQRRVIRQALESCGLEPGDVDAVEAHGTGTALGDPIEANALLDTYGRDR 335
Query: 379 KNTTGIKINATKSMIGHCLGAAGGLEAIATVKAITTGWLHPSINQFNPEPSVEFDTVANK 438
+ + + KS IGH AAG + V A+ G L +++ P P V++ +
Sbjct: 336 DADRPLWLGSVKSNIGHTQAAAGVTGLLKVVLALRNGELPATLHVEEPTPHVDWSSGGVA 395
Query: 439 KQQHEVN---------VAISNSFGFGGHN 458
A+S +FG G N
Sbjct: 396 LLAGNQPWRRGERTRRAAVS-AFGISGTN 423
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 48.7 bits (115), Expect = 3e-06
Identities = 67/486 (13%), Positives = 124/486 (25%), Gaps = 176/486 (36%)
Query: 7 SSLHASPLNPLRSKSNF-----NLPNNARPTARRVSFITASSTKSAPKR---EKDPKKRV 58
S + P + L N+ + A+ ++ ++ E P K V
Sbjct: 96 SPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKY--NVSRLQPYLKLRQALLELRPAKNV 153
Query: 59 VITGMGLV--SVFGNDVDAYYNKLLDGESGITMIDRFDASKFPTRFGGQIRGFSAEGYID 116
+I G+ + DV L K + +I F +++
Sbjct: 154 LIDGVLGSGKTWVALDV------CLS-------------YKVQCKMDFKI--F----WLN 188
Query: 117 GKNDRRLDDCL----RYCIVAGKKALEDADLGADISKKIDKERAGVLVGTGMGGLTVFSD 172
KN + L + +D ++I +I +A L
Sbjct: 189 LKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQA---------ELRRL-- 237
Query: 173 GVQALIEKGHRKITPFFIPYAITNMGSALLAIDLGFMGPNYSISTACATSNYCFYAAANH 232
L K + LL + +
Sbjct: 238 ----LKSKPYEN---------------CLLVLL--------------------------N 252
Query: 233 IRRGEADLMLAGGTEAAIIPIGLGGF-VACRAL-SQRN-------DDPQTASRPWDKDRD 283
++ +A F ++C+ L + R T D
Sbjct: 253 VQNAKA----------------WNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSM 296
Query: 284 GFVMGEGAGVLV------MESLEHAMKRGAP----IIAEYLGGA---------VNCDAYH 324
E +L+ + L + P IIAE + VNCD
Sbjct: 297 TLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLT 356
Query: 325 MTDPRADGLGVSSCIESSLE------------DAGVSPEEVNYINAHATSTLAGDLAEIN 372
IESSL V P + I S + D+ + +
Sbjct: 357 TI------------IESSLNVLEPAEYRKMFDRLSVFPPSAH-IPTILLSLIWFDVIKSD 403
Query: 373 A--IKKVFKNTTGIKINATKSMIG-HCLGAAGGLEAIATVKAITTGWLHPS-INQFNPEP 428
+ + ++ +S I + LE ++ LH S ++ +N
Sbjct: 404 VMVVVNKLHKYSLVEKQPKESTISIPSI----YLELKVKLENEYA--LHRSIVDHYNIPK 457
Query: 429 SVEFDT 434
+ + D
Sbjct: 458 TFDSDD 463
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 468 | |||
| 3ho9_A | 427 | 3-oxoacyl-[acyl-carrier-protein] synthase 2; FABF, | 100.0 | |
| 1e5m_A | 416 | KAS II, beta ketoacyl acyl carrier protein synthas | 100.0 | |
| 2gqd_A | 437 | 3-oxoacyl-[acyl-carrier-protein] synthase 2; dupli | 100.0 | |
| 4ewg_A | 412 | Beta-ketoacyl synthase; ssgcid, structural genomic | 100.0 | |
| 3o04_A | 413 | LMO2201 protein, beta-keto-acyl carrier protein sy | 100.0 | |
| 3kzu_A | 428 | 3-oxoacyl-(acyl-carrier-protein) synthase II; seat | 100.0 | |
| 1j3n_A | 408 | 3-oxoacyl-(acyl-carrier protein) synthase II; cond | 100.0 | |
| 2iwz_A | 438 | 3-oxoacyl-[acyl-carrier-protein] synthase; mitocho | 100.0 | |
| 1ox0_A | 430 | Beta ketoacyl-acyl carrier protein synthase; trans | 100.0 | |
| 1tqy_A | 424 | Beta-ketoacyl synthase/acyl transferase; alpha-bet | 100.0 | |
| 1tqy_B | 415 | Actinorhodin polyketide putative beta-ketoacyl SY; | 100.0 | |
| 4ddo_A | 451 | 3-oxoacyl-[acyl-carrier-protein] synthase 2; ssgci | 100.0 | |
| 2wge_A | 416 | 3-oxoacyl-[acyl-carrier-protein] synthase 1; beta | 100.0 | |
| 2vba_A | 406 | 3-oxoacyl-[acyl-carrier-protein] synthase 1; cytop | 100.0 | |
| 2gp6_A | 434 | 3-oxoacyl-[acyl-carrier-protein] synthase 2; thiol | 100.0 | |
| 3mqd_A | 428 | Beta-ketoacyl synthase; ssgcid, ALS collaborative | 100.0 | |
| 2ix4_A | 431 | 3-oxoacyl-[acyl-carrier-protein] synthase; beta-ke | 100.0 | |
| 3hhd_A | 965 | Fatty acid synthase; transferase, multienzyme, meg | 100.0 | |
| 2hg4_A | 917 | DEBS, 6-deoxyerythronolide B synthase; ketosynthas | 100.0 | |
| 2qo3_A | 915 | Eryaii erythromycin polyketide synthase modules 3; | 100.0 | |
| 2vz8_A | 2512 | Fatty acid synthase; transferase, phosphopantethei | 100.0 | |
| 2pff_A | 1688 | Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl | 100.0 | |
| 2uv8_A | 1887 | Fatty acid synthase subunit alpha (FAS2); fatty ac | 100.0 | |
| 2uv9_A | 1878 | Fatty acid synthase alpha subunits; fungal, dehydr | 100.0 | |
| 3zen_D | 3089 | Fatty acid synthase; transferase, mycolic acid bio | 100.0 | |
| 1wl4_A | 397 | Acetyl-coenzyme A acetyltransferase 2; thiolase fo | 100.0 | |
| 1wdk_C | 390 | 3-ketoacyl-COA thiolase; alpha2BETA2 heterotetrame | 100.0 | |
| 1ulq_A | 401 | Putative acetyl-COA acetyltransferase; structural | 100.0 | |
| 2wu9_A | 442 | 3-ketoacyl-COA thiolase 2, peroxisomal; cysteine o | 100.0 | |
| 2vu1_A | 392 | Acetyl-COA acetyltransferase; acyltransferase, PHB | 100.0 | |
| 3ss6_A | 394 | Acetyl-COA acetyltransferase; structural genomics, | 100.0 | |
| 2iik_A | 418 | 3-ketoacyl-COA thiolase, peroxisomal; fatty acid m | 100.0 | |
| 1afw_A | 393 | 3-ketoacetyl-COA thiolase; fatty acid metabolism; | 100.0 | |
| 3goa_A | 387 | 3-ketoacyl-COA thiolase; metabolism, fatty acid, p | 100.0 | |
| 2ib8_A | 395 | Acetyl-COA acetyltransferase; thiolase fold, potas | 100.0 | |
| 4dd5_A | 396 | Acetyl-COA acetyltransferase; structural genomics, | 100.0 | |
| 4e1l_A | 395 | Acetoacetyl-COA thiolase 2; 3-layer(ABA) sandwich, | 100.0 | |
| 1ub7_A | 322 | 3-oxoacyl-[acyl-carrier protein] synthase; fatty a | 99.98 | |
| 3svk_A | 407 | Acetyl-COA acetyltransferase; ssgcid, NIH, niaid, | 99.97 | |
| 2ebd_A | 309 | 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, | 99.97 | |
| 1hnj_A | 317 | Beta-ketoacyl-acyl carrier protein synthase III; F | 99.96 | |
| 1mzj_A | 339 | Beta-ketoacylsynthase III; beta-ketosynthase, arom | 99.96 | |
| 1zow_A | 313 | 3-oxoacyl-[acyl-carrier-protein] synthase III; FAB | 99.96 | |
| 4egv_A | 520 | Acetyl-COA acetyltransferase; NEW SUB-family, thio | 99.95 | |
| 1u6e_A | 335 | 3-oxoacyl-[acyl-carrier-protein] synthase III; tra | 99.95 | |
| 2x3e_A | 331 | 3-oxoacyl-[acyl-carrier-protein] synthase 3; HED, | 99.94 | |
| 1u0m_A | 382 | Putative polyketide synthase; type III polyketide | 99.94 | |
| 2h84_A | 374 | Steely1; thiolase-fold, type III polyketide syntha | 99.93 | |
| 3tsy_A | 979 | Fusion protein 4-coumarate--COA ligase 1, resvera | 99.92 | |
| 1ted_A | 393 | PKS18; thiolase fold, substrate binding tunnel, tr | 99.9 | |
| 3s21_A | 345 | 3-oxoacyl-[ACP] synthase III; non-decarboxylative | 99.89 | |
| 4dfe_A | 333 | 3-oxoacyl-[acyl-carrier-protein] synthase 3; ssgci | 99.88 | |
| 2d3m_A | 406 | Pentaketide chromone synthase; chalcone synthase, | 99.84 | |
| 3led_A | 392 | 3-oxoacyl-acyl carrier protein synthase III; struc | 99.8 | |
| 1xpm_A | 396 | 3-hydroxy-3-methylglutaryl COA synthase; HMG-COA s | 99.79 | |
| 3a5r_A | 387 | Benzalacetone synthase; chalcone synthase, type II | 99.77 | |
| 3gwa_A | 365 | 3-oxoacyl-(acyl-carrier-protein) synthase III; str | 99.77 | |
| 3il3_A | 323 | 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, | 99.76 | |
| 3h78_A | 359 | PQS biosynthetic enzyme; PQSD, anthranilic acid, a | 99.75 | |
| 1xes_A | 413 | Dihydropinosylvin synthase; native structure, tran | 99.75 | |
| 1ee0_A | 402 | 2-pyrone synthase; polyketide synthase, thiolase f | 99.75 | |
| 3s3l_A | 357 | CERJ; acyltransferase, FABH homologue, KS III homo | 99.74 | |
| 1i88_A | 389 | CHS2, chalcone synthase 2; polyketide synthase, tr | 99.74 | |
| 4efi_A | 354 | 3-oxoacyl-(acyl-carrier protein) synthase; structu | 99.74 | |
| 3il6_A | 321 | 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, | 99.73 | |
| 3awk_A | 402 | Chalcone synthase-like polyketide synthase; type I | 99.72 | |
| 2f82_A | 450 | HMG-COA synthase; HMGS1, transferase; 2.10A {Brass | 99.71 | |
| 3ov2_A | 393 | Curcumin synthase; type III polyketide synthase, t | 99.71 | |
| 2p0u_A | 413 | Stilbenecarboxylate synthase 2; polyketide synthas | 99.69 | |
| 4ewp_A | 350 | 3-oxoacyl-[acyl-carrier-protein] synthase 3; trans | 99.68 | |
| 3oit_A | 387 | OS07G0271500 protein; type III polyketide synthase | 99.68 | |
| 3euo_A | 379 | Type III pentaketide synthase; alpha helix, acyltr | 99.63 | |
| 3e1h_A | 465 | PKSIIINC, putative uncharacterized protein; resorc | 99.62 | |
| 3v4n_A | 388 | HMG-COA synthase; hydroxymethylglutaryl-COA syntha | 99.57 | |
| 3lma_A | 347 | Stage V sporulation protein AD (spovad); NESG, str | 99.56 | |
| 3sqz_A | 425 | Putative hydroxymethylglutaryl-COA synthase; thiol | 99.53 | |
| 3v7i_A | 413 | Putative polyketide synthase; type III polyketide | 99.49 | |
| 2v4w_A | 460 | Hydroxymethylglutaryl-COA synthase, mitochondrial; | 99.48 | |
| 2p8u_A | 478 | Hydroxymethylglutaryl-COA synthase, cytoplasmic; h | 99.47 | |
| 2wya_A | 460 | Hydroxymethylglutaryl-COA synthase, mitochondrial; | 99.13 | |
| 4e1l_A | 395 | Acetoacetyl-COA thiolase 2; 3-layer(ABA) sandwich, | 84.15 | |
| 4dd5_A | 396 | Acetyl-COA acetyltransferase; structural genomics, | 83.98 | |
| 4dfe_A | 333 | 3-oxoacyl-[acyl-carrier-protein] synthase 3; ssgci | 80.58 |
| >3ho9_A 3-oxoacyl-[acyl-carrier-protein] synthase 2; FABF, platensimycin, platencin A1, KAS2, acyltransferase, fatty acid biosynthesis; HET: N3A; 1.90A {Escherichia coli} PDB: 3hnz_A* 3ho2_A* 3i8p_A* 3g11_A* 2gfx_A* 3g0y_A* 2gfv_A* 2gfw_A 2gfy_A* 1kas_A 1b3n_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-84 Score=657.86 Aligned_cols=416 Identities=44% Similarity=0.759 Sum_probs=393.1
Q ss_pred CCCCCCCCCcEEEEeeceeccCCCCHHHHHHHHHcCCCCccccCCCCCCCCCCccccccCCCCCCCCCCccccccCCHHH
Q 012221 48 PKREKDPKKRVVITGMGLVSVFGNDVDAYYNKLLDGESGITMIDRFDASKFPTRFGGQIRGFSAEGYIDGKNDRRLDDCL 127 (468)
Q Consensus 48 ~~~~~~~~~~V~ItG~g~~~p~g~~~~~~~~~L~~G~~~i~~~~~~~~~~~~~~~~g~v~~~d~~~~i~~~~~~~~d~~~ 127 (468)
+..++..+++|||||||+++|+|.+.++||++|++|+++++++++|+...++.++++++++||++++|+++++++|||++
T Consensus 10 ~~~~~~~~~~v~I~G~g~~~p~g~~~~~~w~~l~~g~~~i~~~~~~~~~~~~~~~~~~v~~fd~~~~i~~~~~~~~d~~~ 89 (427)
T 3ho9_A 10 HGSACVSKRRVVVTGLGMLSPVGNTVESTWKALLAGQSGISLIDHFDTSAYATKFAGLVKDFNCEDIISRKEQRKMDAFI 89 (427)
T ss_dssp -------CCCEEEEEEEEEBTTBSSHHHHHHHHHTTCCCEEECCSSCCTTCSCCEEECCSSCCCTTTSCHHHHTTSCHHH
T ss_pred ccCCCCCCCCEEEEeeeEECCCCCCHHHHHHHHHcCCCceeeCCccccccCccceeeEcCCCChhhcCCHHHHhhCCHHH
Confidence 34445567899999999999999999999999999999999999999988999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCccccccccccceEEEeecCCCccchHHHHHHHHHhCCCCcCCcCcchhhhhhhHHHHhhhhC
Q 012221 128 RYCIVAGKKALEDADLGADISKKIDKERAGVLVGTGMGGLTVFSDGVQALIEKGHRKITPFFIPYAITNMGSALLAIDLG 207 (468)
Q Consensus 128 ~l~l~a~~~AL~dAgl~~~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~ia~~lg 207 (468)
+|+++++++||+|||+ ++++++..++||++|++.+++...+..+..+...+...++|+.+++.+.|.++++|++.||
T Consensus 90 ~l~l~aa~~AL~dAGl---~~~~i~~~~~gv~vg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~is~~lg 166 (427)
T 3ho9_A 90 QYGIVAGVQAMQDSGL---EITEENATRIGAAIGSGIGGLGLIEENHTSLMNGGPRKISPFFVPSTIVNMVAGHLTIMYG 166 (427)
T ss_dssp HHHHHHHHHHHHHHTC---CCCTTTGGGEEEEEECSSCCHHHHHHHHHHHHHHCGGGSCTTHHHHHSTTHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHCCC---CcccccccceEEEEccccccHHHHHHHHHHHHhcCccccCcceeccccchHHHHHHHHHhC
Confidence 9999999999999999 6677889999999999999998888888899999999999999999999999999999999
Q ss_pred CCCcceeecccChHHHHHHHHHHHHHHhCCCCEEEEEeeccccchhhhhHhhhccccccCCCCCCCCCCCCCCCCCCeee
Q 012221 208 FMGPNYSISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWDKDRDGFVM 287 (468)
Q Consensus 208 l~Gp~~~v~~acas~l~Al~~A~~~I~~G~~d~~lvgG~e~~~~p~~~~~~~~~~~l~~~~~~~~~~~rpfd~~~~G~v~ 287 (468)
++||+++|+++|+|++.||++|+++|++|+||++||||+|.+.+|..+..|...+.++.+++.|++.|+|||.+++|+++
T Consensus 167 l~Gp~~~v~taCsS~l~Al~~A~~~I~~G~~d~aLvgG~e~~~~p~~~~~~~~~~~ls~~~~~~~~~~~pfd~~~~G~v~ 246 (427)
T 3ho9_A 167 LRGPSISIATAATSGVHNIGHAARIIAYGDADVMVAGGAEKASTPLGVGGFGAARALSTRNDNPQAASRPWDKERDGFVL 246 (427)
T ss_dssp CCSCEECCCCGGGHHHHHHHHHHHHHHHTSCSEEEEEEEECCCSHHHHHHHHHTTCBCCCTTCHHHHCCTTBTTCCSBCB
T ss_pred CCCCeecccchhHHHHHHHHHHHHHHHcCCCCEEEEeeecccCCHHHHHHHHhccCcccCCCCCCcccCCccCCCCCcee
Confidence 99999999999999999999999999999999999999999889999999999999998777778889999999999999
Q ss_pred cceeEEEEecchhHHHhcCCceEEEEEEEEEcCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCcCEEEEccCCCccCC
Q 012221 288 GEGAGVLVMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAGVSPEEVNYINAHATSTLAGD 367 (468)
Q Consensus 288 gEGaaavvL~~~~~A~~~g~~i~a~i~g~~~~~d~~~~~~~~~~~~~~~~~i~~al~~Agl~~~dId~v~~h~~gt~~~D 367 (468)
||||+++||+++++|+++|+++|++|+|++.++|+++++.|.+.+.++.++++++|++||++|+||||||+|||||+.+|
T Consensus 247 geGAaavvL~~~~~A~~~g~~i~a~i~g~~~~~dg~~~~~p~~~~~~~~~ai~~al~~Agl~~~dId~ve~HgtgT~~~d 326 (427)
T 3ho9_A 247 GDGAGMLVLEEYEHAKKRGAKIYAELVGFGMSSDAYHMTSPPENGAGAALAMANALRDAGIEASQIGYVNAHGTSTPAGD 326 (427)
T ss_dssp BCEEEEEEEEEHHHHHHTTCCCCEEEEEEEEEECCSBTTBCCTTCHHHHHHHHHHHHHHTCCGGGCCEEECCCCSCHHHH
T ss_pred eeeEEEEEEccHHHHHHCCCcEEEEEEEEeecCCCCCcCCCCCCHHHHHHHHHHHHHHcCCCHHHccEEEecCCcCCCcC
Confidence 99999999999999999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcc-CCCceeeecccccCccccchhHHHHHHHHHHHhcCCcCCCCCCCCCCCCCCccccccccccc-Ccc
Q 012221 368 LAEINAIKKVFKN-TTGIKINATKSMIGHCLGAAGGLEAIATVKAITTGWLHPSINQFNPEPSVEFDTVANKKQQH-EVN 445 (468)
Q Consensus 368 ~~E~~al~~~f~~-~~~~~v~s~k~~~Gh~~~AsG~~~l~~~~~~l~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~-~~~ 445 (468)
..|..++.++|+. ..+++++++|+++||+++|||++++++++++|++++|||++|+++|+|.+++++++...+++ +.+
T Consensus 327 ~~e~~a~~~~~g~~~~~~~v~s~k~~~GH~~gAsG~~~~i~~~~~l~~~~ipp~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (427)
T 3ho9_A 327 KAEAQAVKTIFGEAASRVLVSSTKSMTGHLLGAAGAVESIYSILALRDQAVPPTINLDNPDEGCDLDFVPHEARQVSGME 406 (427)
T ss_dssp HHHHHHHHHHHGGGGGTSEEECTHHHHCBCGGGHHHHHHHHHHHHHHHTEECCBTTCSSBCTTCCCBCCBSSCEECSSCC
T ss_pred HHHHHHHHHHhcccCCCeEEecchHhhccCHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCccccccccccCCCCC
Confidence 9999999999986 35799999999999999999999999999999999999999999999999999998877777 789
Q ss_pred EEEEEcccccCeeeEEEEeec
Q 012221 446 VAISNSFGFGGHNSVVAFSAF 466 (468)
Q Consensus 446 ~~l~~s~g~gG~n~~~vl~~~ 466 (468)
++++|||||||+|+|+||+++
T Consensus 407 ~a~~~sfGfgG~na~~vl~~~ 427 (427)
T 3ho9_A 407 YTLCNSFGFGGTNGSLIFKKI 427 (427)
T ss_dssp EEEEEEEETTTEEEEEEEECC
T ss_pred EEEEeCccCCceeEEEEEEeC
Confidence 999999999999999999985
|
| >1e5m_A KAS II, beta ketoacyl acyl carrier protein synthase II; condensing enzyme, biosynthetic role, carbon-carbon bond formation; 1.54A {Synechocystis SP} SCOP: c.95.1.1 c.95.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-83 Score=652.13 Aligned_cols=410 Identities=48% Similarity=0.819 Sum_probs=390.3
Q ss_pred CCcEEEEeeceeccCCCCHHHHHHHHHcCCCCccccCCCCCCCCCCccccccCCCCCCCCCCccccccCCHHHHHHHHHH
Q 012221 55 KKRVVITGMGLVSVFGNDVDAYYNKLLDGESGITMIDRFDASKFPTRFGGQIRGFSAEGYIDGKNDRRLDDCLRYCIVAG 134 (468)
Q Consensus 55 ~~~V~ItG~g~~~p~g~~~~~~~~~L~~G~~~i~~~~~~~~~~~~~~~~g~v~~~d~~~~i~~~~~~~~d~~~~l~l~a~ 134 (468)
|++|+|||||+++|.|.+.++||++|++|+++++++++|+...++.++++++++||++++++++++++|||+++|+++++
T Consensus 6 m~~v~I~G~g~~~p~g~~~~~~w~~l~~g~~~i~~~~~~~~~~~~~~~~~~i~~fd~~~~~~~~~~~~~d~~~~l~l~aa 85 (416)
T 1e5m_A 6 KKRVVVTGLGAITPIGNTLQDYWQGLMEGRNGIGPITRFDASDQACRFGGEVKDFDATQFLDRKEAKRMDRFCHFAVCAS 85 (416)
T ss_dssp CCCEEEEEEEEEBTTBSSHHHHHHHHHTTCCCEEECCSSCCTTSSCCEEECCCSCCGGGTSCHHHHHTSCHHHHHHHHHH
T ss_pred CCCEEEEeeeEECCCCCCHHHHHHHHHcCCCeEeeCCccccccCccceeEEeCCCCccccCCHHHHHhcCHHHHHHHHHH
Confidence 47899999999999999999999999999999999999998889999999999999998899999999999999999999
Q ss_pred HHHHHHcCCCCccccccccccceEEEeecCCCccchHHHHHHHHHhCCCCcCCcCcchhhhhhhHHHHhhhhCCCCccee
Q 012221 135 KKALEDADLGADISKKIDKERAGVLVGTGMGGLTVFSDGVQALIEKGHRKITPFFIPYAITNMGSALLAIDLGFMGPNYS 214 (468)
Q Consensus 135 ~~AL~dAgl~~~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~ia~~lgl~Gp~~~ 214 (468)
++||+|||+ ++++++..++||++|++.+++...++++..+...+...++|+.+++.+.+.++.++++.||++||+++
T Consensus 86 ~~Al~dAg~---~~~~i~~~~~gv~~g~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~ia~~lgl~gp~~~ 162 (416)
T 1e5m_A 86 QQAINDAKL---VINELNADEIGVLIGTGIGGLKVLEDQQTILLDKGPSRCSPFMIPMMIANMASGLTAINLGAKGPNNC 162 (416)
T ss_dssp HHHHHHHTC---CCCTTTGGGEEEEEECSSCSHHHHHHHHHHHHHHCGGGSCTTHHHHHSTTHHHHHHHHHHTCCSCEEC
T ss_pred HHHHHHcCC---ChhhcCccceEEEEeecCCcHHHHHHHHHHHHhcCcccCChhHhhhhhhHHHHHHHHHHhCCCCceeC
Confidence 999999999 66778889999999999998888888888888888888999999999999999999999999999999
Q ss_pred ecccChHHHHHHHHHHHHHHhCCCCEEEEEeeccccchhhhhHhhhccccccCCCCCCCCCCCCCCCCCCeeecceeEEE
Q 012221 215 ISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWDKDRDGFVMGEGAGVL 294 (468)
Q Consensus 215 v~~acas~l~Al~~A~~~I~~G~~d~~lvgG~e~~~~p~~~~~~~~~~~l~~~~~~~~~~~rpfd~~~~G~v~gEGaaav 294 (468)
|+++|+|++.||++|+++|++|+||++||||+|..++|..+.+|..++.++.++++|++.|||||.+++|+++||||+++
T Consensus 163 v~~aCsS~l~Al~~A~~~I~~G~~d~~LvgG~e~~~~~~~~~~~~~~~~ls~~~~~p~~~~rpfd~~~~G~v~geGaaav 242 (416)
T 1e5m_A 163 TVTACAAGSNAIGDAFRLVQNGYAKAMICGGTEAAITPLSYAGFASARALSFRNDDPLHASRPFDKDRDGFVMGEGSGIL 242 (416)
T ss_dssp CCCGGGHHHHHHHHHHHHHHTTSCSEEEEEEEECCCSHHHHHHHHHTTCBCCCTTCGGGTCCTTBTTCCSBCBBCEEEEE
T ss_pred ccchhHHHHHHHHHHHHHHHcCCCCEEEEeeecccCCHHHHHHHHHcCCccCCCCCCccccccCccCCCCceeeeeEEEE
Confidence 99999999999999999999999999999999988899999999999999887777889999999999999999999999
Q ss_pred EecchhHHHhcCCceEEEEEEEEEcCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCcCEEEEccCCCccCCHHHHHHH
Q 012221 295 VMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAGVSPEEVNYINAHATSTLAGDLAEINAI 374 (468)
Q Consensus 295 vL~~~~~A~~~g~~i~a~i~g~~~~~d~~~~~~~~~~~~~~~~~i~~al~~Agl~~~dId~v~~h~~gt~~~D~~E~~al 374 (468)
||+++++|+++|+++|++|+|++.++|+++++.|.+++.++.++|+++|+++|++|+||||||+|+|||+.+|.+|.++|
T Consensus 243 vL~~~~~A~~~g~~i~a~I~g~~~~~d~~~~~~p~~~~~~~~~ai~~al~~agl~~~dId~ve~Hgtgt~~~D~~E~~al 322 (416)
T 1e5m_A 243 ILEELESALARGAKIYGEMVGYAMTCDAYHITAPVPDGRGATRAIAWALKDSGLKPEMVSYINAHGTSTPANDVTETRAI 322 (416)
T ss_dssp EEEEHHHHHHTTCCCCEEEEEEEEEECCSCSSSCCTTCHHHHHHHHHHHHHHTCCGGGCCEEECCCCSCHHHHHHHHHHH
T ss_pred EECcHHHHHHCCCeEEEEEEEEEEccCCCCCCCCCCCHHHHHHHHHHHHHHcCCCHhHCCEEEEECCCCcCcCHHHHHHH
Confidence 99999999999999999999999999999999998899999999999999999999999999999999999999999999
Q ss_pred HHHhccC-CCceeeecccccCccccchhHHHHHHHHHHHhcCCcCCCCCCCCCCCCCCcccccccccccCccEEEEEccc
Q 012221 375 KKVFKNT-TGIKINATKSMIGHCLGAAGGLEAIATVKAITTGWLHPSINQFNPEPSVEFDTVANKKQQHEVNVAISNSFG 453 (468)
Q Consensus 375 ~~~f~~~-~~~~v~s~k~~~Gh~~~AsG~~~l~~~~~~l~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~g 453 (468)
.++|+.. .+++|+++|+++||+++|||++++++++++|++++||||+|+++|+|.+++++++.+.+.++.+++++||||
T Consensus 323 ~~~~g~~~~~~~v~s~k~~~GH~~gAaG~~~~i~~~~~l~~~~ipp~~~~~~~~p~~~~~~v~~~~~~~~~~~a~~~sfG 402 (416)
T 1e5m_A 323 KQALGNHAYNIAVSSTKSMTGHLLGGSGGIEAVATVMAIAEDKVPPTINLENPDPECDLDYVPGQSRALIVDVALSNSFG 402 (416)
T ss_dssp HHHHGGGGGGSEEECTHHHHCBCGGGHHHHHHHHHHHHHHHTEECCBTTCSSBCTTCCSCCCBSSCEECCCSEEEEEEEE
T ss_pred HHHHcccCCCCeeeCcchhhcccHHHHHHHHHHHHHHHHhcCCcCCCCCCCCCCCCCCccccCCccccCCCCEEEEcccc
Confidence 9999862 468999999999999999999999999999999999999999999999999999887777889999999999
Q ss_pred ccCeeeEEEEeecC
Q 012221 454 FGGHNSVVAFSAFK 467 (468)
Q Consensus 454 ~gG~n~~~vl~~~~ 467 (468)
|||+|+|+||++|+
T Consensus 403 fGG~n~~~vl~~~~ 416 (416)
T 1e5m_A 403 FGGHNVTLAFKKYQ 416 (416)
T ss_dssp TTTEEEEEEEECCC
T ss_pred CCCeeEEEEEEeCC
Confidence 99999999999874
|
| >2gqd_A 3-oxoacyl-[acyl-carrier-protein] synthase 2; duplicated babababb fold, transferase; 2.30A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.9e-83 Score=649.29 Aligned_cols=412 Identities=45% Similarity=0.777 Sum_probs=388.7
Q ss_pred CCCCCcEEEEeeceeccCCCCHHHHHHHHHcCCCCccccCCCCCCCCCCccccccCCCCCCCCCCccccccCCHHHHHHH
Q 012221 52 KDPKKRVVITGMGLVSVFGNDVDAYYNKLLDGESGITMIDRFDASKFPTRFGGQIRGFSAEGYIDGKNDRRLDDCLRYCI 131 (468)
Q Consensus 52 ~~~~~~V~ItG~g~~~p~g~~~~~~~~~L~~G~~~i~~~~~~~~~~~~~~~~g~v~~~d~~~~i~~~~~~~~d~~~~l~l 131 (468)
|.++++|+|||||+++|+|.+.++||++|++|+++++++++|+...++.++++++++||++++++++++++|||+++|++
T Consensus 24 m~~~~~vaI~G~g~~~P~g~~~~~~w~~l~~g~~~i~~~~~~~~~~~~~~~~~~i~~fd~~~~~~~~~~~~~d~~~~l~l 103 (437)
T 2gqd_A 24 MSQNKRVVITGMGALSPIGNDVKTTWENALKGVNGIDKITRIDTEPYSVHLAGELKNFNIEDHIDKKEARRMDRFTQYAI 103 (437)
T ss_dssp ---CCCEEEEEEEEEBTTBSSHHHHHHHHHTTCCCEEECCSSCCTTSSCCEEECCSSCCGGGTSCSTTTTTSCHHHHHHH
T ss_pred ccCCCCEEEEEeeEECCCCCCHHHHHHHHHcCCCceeeCCccccccCccceeEEeCCCChhcCCCHHHHHhcCHHHHHHH
Confidence 44568999999999999999999999999999999999999998888999999999999988899999999999999999
Q ss_pred HHHHHHHHHcCCCCccccccccccceEEEeecCCCccchHHHHHHHHHhCCCCcCCcCcchhhhhhhHHHHhhhhCCCCc
Q 012221 132 VAGKKALEDADLGADISKKIDKERAGVLVGTGMGGLTVFSDGVQALIEKGHRKITPFFIPYAITNMGSALLAIDLGFMGP 211 (468)
Q Consensus 132 ~a~~~AL~dAgl~~~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~ia~~lgl~Gp 211 (468)
+++++||+|||+ ++++++..++|||+|++.+++...++.+..+...+.+.++|+.+++.+.+.++.++++.||++||
T Consensus 104 ~aa~~AL~dAGl---~~~~i~~~~~gv~vg~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~ia~~lgl~gp 180 (437)
T 2gqd_A 104 VAAREAVKDAQL---DINENTADRIGVWIGSGIGGMETFEIAHKQLMDKGPRRVSPFFVPMLIPDMATGQVSIDLGAKGP 180 (437)
T ss_dssp HHHHHHHHHHTC---CCCTTTGGGEEEEEECSSCCHHHHHHHHHHHHHHCGGGSCTTHHHHHSTTHHHHHHHHHHTCCSS
T ss_pred HHHHHHHHHcCC---CccccCCcceEEEEeecCCcHHHHHHHHHHHHhcCcccCChHHhhhcchhHHHHHHHHHhCCCCc
Confidence 999999999999 66778889999999999998888888888888888889999999999999999999999999999
Q ss_pred ceeecccChHHHHHHHHHHHHHHhCCCCEEEEEeeccccchhhhhHhhhccccccCCCCCCCCCCCCCCCCCCeeeccee
Q 012221 212 NYSISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWDKDRDGFVMGEGA 291 (468)
Q Consensus 212 ~~~v~~acas~l~Al~~A~~~I~~G~~d~~lvgG~e~~~~p~~~~~~~~~~~l~~~~~~~~~~~rpfd~~~~G~v~gEGa 291 (468)
+++|+++|+|++.||++|+++|++|+||++||||+|..++|..+..|..++.++. +++|++.|+|||.+++|+++|||+
T Consensus 181 ~~~v~~aCsS~l~Al~~A~~~I~~G~~d~aLvgG~e~~~~~~~~~~~~~~~~ls~-~~~p~~~~~pfd~~~~G~v~geGa 259 (437)
T 2gqd_A 181 NGATVTACATGTNSIGEAFKIVQRGDADAMITGGTEAPITHMAIAGFSASRALST-NDDIETACRPFQEGRDGFVMGEGA 259 (437)
T ss_dssp EECBCCGGGHHHHHHHHHHHHHHTTSCSEEEEEEEECCCSHHHHHHHHHTTCBCC-CCCTTTSSCTTCTTCCSBCBBCEE
T ss_pred eEEecCCccHHHHHHHHHHHHHHcCCCCEEEEeeeccccCHHHHHHHHhccCccC-CCCCccccCCCCCCCCCceeeceE
Confidence 9999999999999999999999999999999999999889999999999999886 445888999999999999999999
Q ss_pred EEEEecchhHHHhcCCceEEEEEEEEEcCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCcCEEEEccCCCccCCHHHH
Q 012221 292 GVLVMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAGVSPEEVNYINAHATSTLAGDLAEI 371 (468)
Q Consensus 292 aavvL~~~~~A~~~g~~i~a~i~g~~~~~d~~~~~~~~~~~~~~~~~i~~al~~Agl~~~dId~v~~h~~gt~~~D~~E~ 371 (468)
+++||+++++|+++|+++|++|+|++.++|+++++.|.+++.++.++|+++|+++|++|+||||||+|+|||+.+|.+|+
T Consensus 260 aavvL~~~~~A~~~g~~i~a~I~g~~~~~dg~~~~~p~~~~~~~~~ai~~Al~~Agl~p~dId~ve~HgtgT~~~D~~E~ 339 (437)
T 2gqd_A 260 GILVIESLESAQARGANIYAEIVGYGTTGDAYHITAPAPEGEGGSRAMQAAMDDAGIEPKDVQYLNAHGTSTPVGDLNEV 339 (437)
T ss_dssp EEEEEEEHHHHHHHTCCCCEEEEEEEEEECCSCSSSCCGGGHHHHHHHHHHHHHHTCCGGGCCEEECCCCSCHHHHHHHH
T ss_pred EEEEECcHHHHHhCCCceEEEEEEEEecCCCCCCCCCCCCHHHHHHHHHHHHHHcCCCHhhCCEEEEECCCCcCcCHHHH
Confidence 99999999999999999999999999999999999998899999999999999999999999999999999999999999
Q ss_pred HHHHHHhcc-CCCceeeecccccCccccchhHHHHHHHHHHHhcCCcCCCCCCCCCCCCCCcccccccccccCccEEEEE
Q 012221 372 NAIKKVFKN-TTGIKINATKSMIGHCLGAAGGLEAIATVKAITTGWLHPSINQFNPEPSVEFDTVANKKQQHEVNVAISN 450 (468)
Q Consensus 372 ~al~~~f~~-~~~~~v~s~k~~~Gh~~~AsG~~~l~~~~~~l~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 450 (468)
++|.++|+. ..+++|+++|+++||+++|+|++++++++++|+++.+|||+|+++|+|.+++++++.+.+.++.+++++|
T Consensus 340 ~al~~~fg~~~~~~~v~s~k~~~GH~~gAaG~~~li~~~l~l~~~~ipp~~~~~~~~p~~~~~~v~~~~~~~~~~~a~~~ 419 (437)
T 2gqd_A 340 KAIKNTFGEAAKHLKVSSTKSMTGHLLGATGGIEAIFSALSIKDSKVAPTIHAVTPDPECDLDIVPNEAQDLDITYAMSN 419 (437)
T ss_dssp HHHHHHHGGGGTSCEEECTHHHHCBCGGGHHHHHHHHHHHHHHHTEECCBTTCCSCCSSCCSBCCBSSCEECCCSEEEEE
T ss_pred HHHHHHHhccCCCceeecchhhhcCChhhhhHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcccCCCccccCCCCEEEEc
Confidence 999999986 3469999999999999999999999999999999999999999999999999999887777889999999
Q ss_pred cccccCeeeEEEEeecC
Q 012221 451 SFGFGGHNSVVAFSAFK 467 (468)
Q Consensus 451 s~g~gG~n~~~vl~~~~ 467 (468)
||||||+|+|+||++++
T Consensus 420 sfGfGG~na~~vl~~~~ 436 (437)
T 2gqd_A 420 SLGFGGHNAVLVFKKFE 436 (437)
T ss_dssp EECGGGEEEEEEEECCC
T ss_pred cCcCCCeeEEEEEEecc
Confidence 99999999999999985
|
| >4ewg_A Beta-ketoacyl synthase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, transferase; 2.25A {Burkholderia phymatum} | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-83 Score=646.45 Aligned_cols=406 Identities=32% Similarity=0.488 Sum_probs=386.9
Q ss_pred CCcEEEEeeceeccCCCCHHHHHHHHHcCCCCccccCCCCCC-CCCCccccccCCCCCCCCCCccccccCCHHHHHHHHH
Q 012221 55 KKRVVITGMGLVSVFGNDVDAYYNKLLDGESGITMIDRFDAS-KFPTRFGGQIRGFSAEGYIDGKNDRRLDDCLRYCIVA 133 (468)
Q Consensus 55 ~~~V~ItG~g~~~p~g~~~~~~~~~L~~G~~~i~~~~~~~~~-~~~~~~~g~v~~~d~~~~i~~~~~~~~d~~~~l~l~a 133 (468)
|++|||||||+++|+|.+.++||++|++|+++++++++|+.. .++.++++.+++||+.+++++++.++||++++|++++
T Consensus 5 m~~v~ItG~g~~~p~g~~~~~~w~~l~~g~~~i~~~~~~~~~~~~~~~~~~~v~~fd~~~~i~~~~~~~~d~~~~l~l~a 84 (412)
T 4ewg_A 5 MKRVVITGMGGVTALGSRWDEIEAALKAGRNAVRRMPDWDYFESLHTRLAAPLPGFAQPADWPRKKTRSMGRVSMYAVRA 84 (412)
T ss_dssp CCCEEEEEEEEEBTTBSSHHHHHHHHHHTCCCCEECGGGGGSSSCCCCEEBCCSCCCCCTTSCHHHHTTCCHHHHHHHHH
T ss_pred CCEEEEEeeEEECCCcCCHHHHHHHHHcCCCceeeCCccccccCCccceeeecCCCChhhhCCHHHHhhCCHHHHHHHHH
Confidence 578999999999999999999999999999999999998876 6888999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCCccccccccccceEEEeecCCCccchHHHHHHHHHhCCCCcCCcCcchhhhhhhHHHHhhhhCCCCcce
Q 012221 134 GKKALEDADLGADISKKIDKERAGVLVGTGMGGLTVFSDGVQALIEKGHRKITPFFIPYAITNMGSALLAIDLGFMGPNY 213 (468)
Q Consensus 134 ~~~AL~dAgl~~~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~ia~~lgl~Gp~~ 213 (468)
+++||+|||+. ++++++..++||++|++.+++...+++++.+...+...++|+.++..+.+.+++++++.||++||++
T Consensus 85 a~~Al~dAGl~--~~~~i~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lgl~gp~~ 162 (412)
T 4ewg_A 85 SELALADAGFA--GDESISDGRMGVAYGSSSGSVEPIRAFGTMLESGSMTDVTSNSYVQMMPHTTAVNVSLFWDLKGRIV 162 (412)
T ss_dssp HHHHHHHHTCT--TCGGGGTTTEEEEEECSCCCHHHHHHHHHHHHHCCCTTCCTTHHHHHSTTHHHHHHHHHTTCCSCEE
T ss_pred HHHHHHhcCCC--CccccCccceEEEEeccCCchHHHHHHHHHHHhcCcccCChhhhhhhcccHHHHHHHHHhCCCCCcc
Confidence 99999999992 2356788999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecccChHHHHHHHHHHHHHHhCCCCEEEEEeeccccchhhhhHhhhccccccCCCCCCCCCCCCCCCCCCeeecceeEE
Q 012221 214 SISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWDKDRDGFVMGEGAGV 293 (468)
Q Consensus 214 ~v~~acas~l~Al~~A~~~I~~G~~d~~lvgG~e~~~~p~~~~~~~~~~~l~~~~~~~~~~~rpfd~~~~G~v~gEGaaa 293 (468)
+|+++|+|++.||++|+++|++|+||++||||+|. +++..+..|...+.++...+.|+..|||||.+++|+++||||++
T Consensus 163 ~v~~aCsS~l~Al~~A~~~I~~G~~d~~LvgG~e~-~s~~~~~~~~~~~~l~~~~~~p~~~~rpfd~~~~G~~~geGAaa 241 (412)
T 4ewg_A 163 PTSSACASGSQAIGYAYENIAMGKQTLMLAGGAEE-LSGPAVAVFDTLYATSTRNDEPHLTPRPFDAKRDGLVVGEGAAT 241 (412)
T ss_dssp ECCCGGGHHHHHHHHHHHHHHTTSCSEEEEEEEEC-CCHHHHHHHHTTTCBCCCTTCGGGCCCTTBTTCCCBCBBCEEEE
T ss_pred cccchhHHHHHHHHHHHHHHHcCCCCEEEEecccc-CCHHHHHHHHHhhccccCCCCCCCCCCCCCCCCCCCceECeEEE
Confidence 99999999999999999999999999999999999 89999999999999998888889999999999999999999999
Q ss_pred EEecchhHHHhcCCceEEEEEEEEEcCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCcCEEEEccCCCccCCHHHHHH
Q 012221 294 LVMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAGVSPEEVNYINAHATSTLAGDLAEINA 373 (468)
Q Consensus 294 vvL~~~~~A~~~g~~i~a~i~g~~~~~d~~~~~~~~~~~~~~~~~i~~al~~Agl~~~dId~v~~h~~gt~~~D~~E~~a 373 (468)
|||+++++|+++|+++|++|+|++.++|+++++.| ++.++.++|+++|++||++|+||||||+|||||+.+|.+|..+
T Consensus 242 vvL~~~~~A~~~g~~i~a~i~g~~~~~dg~~~~~p--~~~~~~~ai~~Al~~Agl~~~dId~ve~Hgtgt~~~D~~E~~a 319 (412)
T 4ewg_A 242 LVLEEYEHAKARGATIHAEIVGFGCNSDGAHMTQP--TASTMARAMQLALEDAKLDANAIAYVNAHGTSTDRGDVAESQA 319 (412)
T ss_dssp EEEEEHHHHHHTTCCCCEEEEEEEEEECSSCSSSC--CHHHHHHHHHHHHHHTTCCGGGEEEEECCCCCCHHHHHHHHHH
T ss_pred EEEccHHHHhhCCCcEEEEEEEEEEcCCCCCCCCC--CHHHHHHHHHHHHHHcCCCHHHCCEEEccCCCCccccHHHHHH
Confidence 99999999999999999999999999999998877 6788999999999999999999999999999999999999999
Q ss_pred HHHHhccCCCceeeecccccCccccchhHHHHHHHHHHHhcCCcCCCCCCCCCCCCC-CcccccccccccCccEEEEEcc
Q 012221 374 IKKVFKNTTGIKINATKSMIGHCLGAAGGLEAIATVKAITTGWLHPSINQFNPEPSV-EFDTVANKKQQHEVNVAISNSF 452 (468)
Q Consensus 374 l~~~f~~~~~~~v~s~k~~~Gh~~~AsG~~~l~~~~~~l~~~~~pp~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~s~ 452 (468)
+.++|+. .++|++.|+++||++||||++++++++++|++++|||++|+++|+|.+ ++++++.+.+.++.+++++|||
T Consensus 320 l~~~~~~--~~~v~s~K~~~GH~~gAsG~~~~~~~~~~l~~~~ipp~~~~~~~~p~~~~~~~v~~~~~~~~~~~~~~~sf 397 (412)
T 4ewg_A 320 TARTFGE--RMPISSLKSYVGHTLGACGALEAWWTIEMMKRNWYAPTLNLTEVDPACAPLDYIRGEARAIDAEYVMSNNF 397 (412)
T ss_dssp HHHHHCT--TCEEECTHHHHCBCGGGHHHHHHHHHHHHHHHTEECCCTTCCSBCTTSCCCEECCSSCEECCCSEEEEEEE
T ss_pred HHHHcCC--CCeeeCccccccccHHHHHHHHHHHHHHHHhcCCcCCCCCCCCCCCcccccccccCcccCCCCCEEEEeee
Confidence 9999986 489999999999999999999999999999999999999999999999 8999888777888999999999
Q ss_pred cccCeeeEEEEeecC
Q 012221 453 GFGGHNSVVAFSAFK 467 (468)
Q Consensus 453 g~gG~n~~~vl~~~~ 467 (468)
||||+|+|+||++++
T Consensus 398 gfGG~na~~vl~~~~ 412 (412)
T 4ewg_A 398 AFGGINTSLIFRRVR 412 (412)
T ss_dssp EGGGEEEEEEEECCC
T ss_pred cCCcceEEEEEeeCC
Confidence 999999999999874
|
| >3o04_A LMO2201 protein, beta-keto-acyl carrier protein synthase II; csgid, structural genomics; 1.85A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-82 Score=644.70 Aligned_cols=409 Identities=41% Similarity=0.757 Sum_probs=392.8
Q ss_pred CCcEEEEeeceeccCCCCHHHHHHHHHcCCCCccccCCCCCCCCCCccccccCCCCCCCCCCccccccCCHHHHHHHHHH
Q 012221 55 KKRVVITGMGLVSVFGNDVDAYYNKLLDGESGITMIDRFDASKFPTRFGGQIRGFSAEGYIDGKNDRRLDDCLRYCIVAG 134 (468)
Q Consensus 55 ~~~V~ItG~g~~~p~g~~~~~~~~~L~~G~~~i~~~~~~~~~~~~~~~~g~v~~~d~~~~i~~~~~~~~d~~~~l~l~a~ 134 (468)
+++|+|||||+++|.|.+.++||++|++|+++++++++|+...++.++++.+++||+++|++++++++|||+++|+++++
T Consensus 3 ~~~v~ItG~g~~~P~g~~~~~~w~~l~~g~~~i~~~~~~~~~~~~~~~~~~v~~fd~~~~i~~~~~~~~d~~~~l~l~Aa 82 (413)
T 3o04_A 3 KRRVVVTGIGAVTPIGNDAETSWENAKKGVNGVAKMTRLNPDDFPVKIAAELKDFDVEKYLEKKEARKMDRFTHYAIASA 82 (413)
T ss_dssp CCCEEEEEEEEEBTTBSSHHHHHHHHHTTCCCEEECCSSCGGGSSCCEEECCSSCCGGGTSCHHHHTTSCHHHHHHHHHH
T ss_pred CCCEEEEEeEEECCCCCCHHHHHHHHHcCCCceeeCCccccccCccccccccCCCChhhccCHHHHhhCCHHHHHHHHHH
Confidence 57899999999999999999999999999999999999998888899999999999999999999999999999999999
Q ss_pred HHHHHHcCCCCccccccccccceEEEeecCCCccchHHHHHHHHHhCCCCcCCcCcchhhhhhhHHHHhhhhCCCCccee
Q 012221 135 KKALEDADLGADISKKIDKERAGVLVGTGMGGLTVFSDGVQALIEKGHRKITPFFIPYAITNMGSALLAIDLGFMGPNYS 214 (468)
Q Consensus 135 ~~AL~dAgl~~~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~ia~~lgl~Gp~~~ 214 (468)
++||+|||+ +++++++.++||++|++.++...++..+..+...+...++|+.+++.+.|.++++|++.||++||+++
T Consensus 83 ~~AL~dAGl---~~~~id~~~~gv~vgt~~g~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~ia~~lgl~gp~~~ 159 (413)
T 3o04_A 83 EMAVQDSGL---VIDDSNANRVGVWIGSGIGGMETFETQYEIFLNRGHRRVSPFFVPMMIPDMGSGQVSIRFGAKGINST 159 (413)
T ss_dssp HHHHHHHTC---CCCTTTGGGEEEEEECSSCCHHHHHHHHHHHHHHCTTTSCTTHHHHHSTTHHHHHHHHHHTCCSCEEC
T ss_pred HHHHHHcCC---ChhHcCccceEEEEccccCcHHHHHHHHHHHHhcCCCccCchhhhcccccHHHHHHHHHhCCCCccee
Confidence 999999999 66788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecccChHHHHHHHHHHHHHHhCCCCEEEEEeeccccchhhhhHhhhccccccCCCCCCCCCCCCCCCCCCeeecceeEEE
Q 012221 215 ISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWDKDRDGFVMGEGAGVL 294 (468)
Q Consensus 215 v~~acas~l~Al~~A~~~I~~G~~d~~lvgG~e~~~~p~~~~~~~~~~~l~~~~~~~~~~~rpfd~~~~G~v~gEGaaav 294 (468)
|+++|+|++.||++|+++|++|+||++||||+|..+++..+..|...+.++. ..+|++.|+|||.+++|+++||||+++
T Consensus 160 v~~aCss~~~Al~~A~~~I~~G~~d~~lvgG~e~~~~~~~~~~~~~~~~ls~-~~~p~~~~~pfd~~~~g~~~gdGAaav 238 (413)
T 3o04_A 160 TVTACATATNSIGDAFKVIERGDADAMITGGAEAPITKMSLAGFTANKALSL-NPDPETACRPFDKDRDGFIIGEGAGIV 238 (413)
T ss_dssp CCCGGGHHHHHHHHHHHHHHTTSCSEEEEEEEECCCSHHHHHHHHHTTCBCC-CCCTTTSCCTTBTTCCSBCBBCEEEEE
T ss_pred ecchhHHHHHHHHHHHHHHHcCCCCEEEEeEEcccCCHHHHHHHHhcccccC-CCCCCCCcCCCcCCCCCceEeccEEEE
Confidence 9999999999999999999999999999999999999999999999999985 455788999999999999999999999
Q ss_pred EecchhHHHhcCCceEEEEEEEEEcCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCcCEEEEccCCCccCCHHHHHHH
Q 012221 295 VMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAGVSPEEVNYINAHATSTLAGDLAEINAI 374 (468)
Q Consensus 295 vL~~~~~A~~~g~~i~a~i~g~~~~~d~~~~~~~~~~~~~~~~~i~~al~~Agl~~~dId~v~~h~~gt~~~D~~E~~al 374 (468)
||+++++|+++|+++|++|+|++.++|+++.+.|.+.+.++.++++++|+++|++|+||||||+|||||+.+|.+|.++|
T Consensus 239 vL~~~~~A~~~g~~i~a~i~g~~~~~dg~~~~~~~~~~~~~~~a~~~al~~agl~~~dId~ve~HgtgT~~~d~~e~~al 318 (413)
T 3o04_A 239 ILEEYEHAKARGAKIYAEIVGYGATGDAYHITAPAPNGEGAARAMKMAIDDAGLTPDKVDYINAHGTSTPYNDEYETQAI 318 (413)
T ss_dssp EEEEHHHHHHHTCCCCEEEEEEEEEECCSCSSSCCGGGHHHHHHHHHHHHHHTCCGGGCCEEECCCCCCHHHHHHHHHHH
T ss_pred EEeeHHHHHhCCCeEEEEEEEEEEcCCCCCCCCCCCCHHHHHHHHHHHHHHcCCCHHHcCEEEEeCCcCcccCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcc-CCCceeeecccccCccccchhHHHHHHHHHHHhcCCcCCCCCCCCCCCCCCcccccccccccCccEEEEEccc
Q 012221 375 KKVFKN-TTGIKINATKSMIGHCLGAAGGLEAIATVKAITTGWLHPSINQFNPEPSVEFDTVANKKQQHEVNVAISNSFG 453 (468)
Q Consensus 375 ~~~f~~-~~~~~v~s~k~~~Gh~~~AsG~~~l~~~~~~l~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~g 453 (468)
.++|+. ..+++|+++|+++||++||||++++++++++|+++++||++|+++|+|.+++++++.+.+..+.+++++||||
T Consensus 319 ~~~~~~~~~~~~v~s~k~~~GH~~gAsG~~~~~~~~~~l~~~~ipp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sfg 398 (413)
T 3o04_A 319 KTVFGEHAKKLAISSTKSMTGHTLGASGGIEAIFALLTIRDNIIAPTIHLKNQDEVCDLDYVPNEAREANVNVVISNSFG 398 (413)
T ss_dssp HHHHGGGTTTSEEECTHHHHCBCGGGHHHHHHHHHHHHHHHTEECCBTTCCSBCSSCCSCCCBSSCEECCCCEEEEEEEE
T ss_pred HHHhcccCCCCceecccccccccHHHHHHHHHHHHHHHHHhCCcCCCCCCCCCCCCCCcccCCCcccCCCCCEEEEeCcc
Confidence 999986 3569999999999999999999999999999999999999999999999999999888777889999999999
Q ss_pred ccCeeeEEEEeecC
Q 012221 454 FGGHNSVVAFSAFK 467 (468)
Q Consensus 454 ~gG~n~~~vl~~~~ 467 (468)
|||+|+|+||++++
T Consensus 399 fgG~na~~vl~~~~ 412 (413)
T 3o04_A 399 FGGHNATLVFKRIE 412 (413)
T ss_dssp TTTEEEEEEEECCC
T ss_pred CCceEEEEEEEeCC
Confidence 99999999999986
|
| >3kzu_A 3-oxoacyl-(acyl-carrier-protein) synthase II; seattle structural genomics center for infectious disease, ssgcid, acyltransferase; 1.75A {Brucella melitensis} PDB: 3e60_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-82 Score=644.71 Aligned_cols=411 Identities=42% Similarity=0.724 Sum_probs=390.7
Q ss_pred CCCcEEEEeeceeccCCCCHHHHHHHHHcCCCCccccCCCCCCCCCCccccccC-------CCCCCCCCCccccccCCHH
Q 012221 54 PKKRVVITGMGLVSVFGNDVDAYYNKLLDGESGITMIDRFDASKFPTRFGGQIR-------GFSAEGYIDGKNDRRLDDC 126 (468)
Q Consensus 54 ~~~~V~ItG~g~~~p~g~~~~~~~~~L~~G~~~i~~~~~~~~~~~~~~~~g~v~-------~~d~~~~i~~~~~~~~d~~ 126 (468)
-++||||||||+++|+|.++++||++|++|+++|+++++|+...++.+++++++ +||+.++|+++++++|||+
T Consensus 8 ~~~~~viTG~G~vsp~g~~~~~~w~~L~~G~s~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~~~~i~~~~~~~~d~~ 87 (428)
T 3kzu_A 8 HMRRVVITGLGLVSPLASGVEETWKRLLAGESGARRVTEFEVDDLACQIACRIPVGDGTNGTFNPDLHMDPKEQRKVDPF 87 (428)
T ss_dssp -CCCEEEEEEEEECSSCBSHHHHHHHHHTTCCCEEECCSSCCTTSSCCEEECCCBSSSSTTCBCGGGTSCHHHHTTSCHH
T ss_pred cccceEEEeceEECCCcCCHHHHHHHHHcCCCeeeeCCccccccCcCceeeEecccccccccCChhhcCCHHHHHhCCHH
Confidence 378999999999999999999999999999999999999999888888999887 7999999999999999999
Q ss_pred HHHHHHHHHHHHHHcCCCCccccc-cccccceEEEeecCCCccchHHHHHHHHHhCCCCcCCcCcchhhhhhhHHHHhhh
Q 012221 127 LRYCIVAGKKALEDADLGADISKK-IDKERAGVLVGTGMGGLTVFSDGVQALIEKGHRKITPFFIPYAITNMGSALLAID 205 (468)
Q Consensus 127 ~~l~l~a~~~AL~dAgl~~~~~~~-~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~ia~~ 205 (468)
++|+++++++||+|||+ ++++ ++..++||++|++.+++....+++..+...+...++|+.+++.+.+..+++|++.
T Consensus 88 ~~l~l~aa~~AL~dAGl---~~~~~id~~~~gv~vg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~is~~ 164 (428)
T 3kzu_A 88 IVYAVGAADQALDDAGW---HPENDEDQVRTGVLIGSGIGGIEGIVEAGYTLRDKGPRRISPFFIPGRLINLASGHVSIK 164 (428)
T ss_dssp HHHHHHHHHHHHHHHTC---CCCSHHHHHTEEEEEECSSCSHHHHHHHHHHHHHTCGGGSCTTTTTTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCC---ChhhhccccceEEEEcccCCcchhHHHHHHHHHhcCccccCchhcccchhhhHHHHHHHH
Confidence 99999999999999999 5556 7888999999999999988888888898889999999999999999999999999
Q ss_pred hCCCCcceeecccChHHHHHHHHHHHHHHhCCCCEEEEEeeccccchhhhhHhhhccccccC-CCCCCCCCCCCCCCCCC
Q 012221 206 LGFMGPNYSISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAIIPIGLGGFVACRALSQR-NDDPQTASRPWDKDRDG 284 (468)
Q Consensus 206 lgl~Gp~~~v~~acas~l~Al~~A~~~I~~G~~d~~lvgG~e~~~~p~~~~~~~~~~~l~~~-~~~~~~~~rpfd~~~~G 284 (468)
||++||+++|+++|+|++.||++|+++|++|+||++||||+|..++|..+..|...+.++.. .+.|...|+|||.+++|
T Consensus 165 lgl~Gp~~~v~taCsS~l~Al~~A~~~I~~G~~d~aLvgG~e~~~~~~~~~~~~~~~~ls~~~~~~~~~~~~pfd~~~~G 244 (428)
T 3kzu_A 165 HKLRGPNHSVVTACATGTHAIGDAARLIAFGDADVMVAGGTESPVSRISLAGFAACKALSTERNDDPTAASRPYDEDRDG 244 (428)
T ss_dssp HTCCSCEECBCCGGGHHHHHHHHHHHHHHTTSCSEEEEEEEECCCSHHHHHHHHHTTCBCCSCTTSGGGTCCTTBTTCCS
T ss_pred cCCCCceeeecCccHHHHHHHHHHHHHHHCCCCCEEEEeeecCcCCHHHHHHHHHccccccCccCCcccccCCcccCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999865 55667899999999999
Q ss_pred eeecceeEEEEecchhHHHhcCCceEEEEEEEEEcCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCcCEEEEccCCCc
Q 012221 285 FVMGEGAGVLVMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAGVSPEEVNYINAHATSTL 364 (468)
Q Consensus 285 ~v~gEGaaavvL~~~~~A~~~g~~i~a~i~g~~~~~d~~~~~~~~~~~~~~~~~i~~al~~Agl~~~dId~v~~h~~gt~ 364 (468)
+++||||+++||+++++|+++|+++|++|+|++.++|+++++.|.+.+.++.++++++|+++|++|+||||||+|||||
T Consensus 245 ~v~gdGAaavvL~~~~~A~~~g~~i~a~i~g~~~~~dg~~~~~p~~~~~~~~~ai~~al~~Agl~~~dId~ve~HgtgT- 323 (428)
T 3kzu_A 245 FVMGEGAGIVVLEELEHALARGAKIYAEVIGYGMSGDAFHITAPTESGEGAQRCMVAALKRAGIVPDEIDYINAHGTST- 323 (428)
T ss_dssp BCBBCEEEEEEEEEHHHHHHHTCCCCEEEEEEEEEECCSCSSSCCTTCHHHHHHHHHHHHHHTCCGGGCCEEECCCCSS-
T ss_pred eeecCceEEEEEccHHHHHhCCCceEEEEEEEEEccCCCCCCCCCCCHHHHHHHHHHHHHHcCCCHHHeeEEEecCCcc-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHhcc-CCCceeeecccccCccccchhHHHHHHHHHHHhcCCcCCCCCCCCCCCCCCcccccccccccC
Q 012221 365 AGDLAEINAIKKVFKN-TTGIKINATKSMIGHCLGAAGGLEAIATVKAITTGWLHPSINQFNPEPSVEFDTVANKKQQHE 443 (468)
Q Consensus 365 ~~D~~E~~al~~~f~~-~~~~~v~s~k~~~Gh~~~AsG~~~l~~~~~~l~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~ 443 (468)
.+|..|++++.++|+. ..+++++++|+++||++||+|++++++++++|++++||||+|+++|+|.+++++++...+.++
T Consensus 324 ~~d~~e~~al~~~~g~~~~~~~v~s~k~~~GH~~gAsG~~~~i~~~~~l~~~~ipp~~~~~~~~~~~~~~~~~~~~~~~~ 403 (428)
T 3kzu_A 324 MADTIELGAVERVVGEAAAKISMSSTKSSIGHLLGAAGAAEAVFSTLAIRDNIAPATLNLDNPAAQTRIDLVPHKPRERK 403 (428)
T ss_dssp TTHHHHHHHHHHHHGGGGGGCEEECTHHHHCBCGGGHHHHHHHHHHHHHHHTEECCBTTCSSBSSCCSSBCCBSSCEECC
T ss_pred hhhHHHHHHHHHHhccCCCceeeCCchhhhCCCchhhHHHHHHHHHHHhccCccCCCCCCCCCCCCCCcccCCCCCcCCC
Confidence 9999999999999986 346899999999999999999999999999999999999999999999999999988888888
Q ss_pred ccEEEEEcccccCeeeEEEEeecCC
Q 012221 444 VNVAISNSFGFGGHNSVVAFSAFKP 468 (468)
Q Consensus 444 ~~~~l~~s~g~gG~n~~~vl~~~~~ 468 (468)
.+++++|||||||+|+|+||++|+.
T Consensus 404 ~~~a~~~sfGfgG~na~~vl~~~~a 428 (428)
T 3kzu_A 404 IDVALSNSFGFGGTNASLVLRRYTA 428 (428)
T ss_dssp CSEEEEEEEETTTEEEEEEEECCCC
T ss_pred CCEEEEeCcccChhhEEEEEeecCC
Confidence 9999999999999999999999863
|
| >1j3n_A 3-oxoacyl-(acyl-carrier protein) synthase II; condensing enzymes, fatty acid elongation, acyl-carrier protein (ACP); HET: CIT; 2.00A {Thermus thermophilus} SCOP: c.95.1.1 c.95.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-82 Score=642.30 Aligned_cols=406 Identities=49% Similarity=0.817 Sum_probs=387.1
Q ss_pred CcEEEEeeceeccCCCCHHHHHHHHHcCCCCccccCCCCCCCCCCccccccCCCCCCCCCCccccccCCHHHHHHHHHHH
Q 012221 56 KRVVITGMGLVSVFGNDVDAYYNKLLDGESGITMIDRFDASKFPTRFGGQIRGFSAEGYIDGKNDRRLDDCLRYCIVAGK 135 (468)
Q Consensus 56 ~~V~ItG~g~~~p~g~~~~~~~~~L~~G~~~i~~~~~~~~~~~~~~~~g~v~~~d~~~~i~~~~~~~~d~~~~l~l~a~~ 135 (468)
++|+|||||+++|+|.+.++||++|++|+++++++++|+...++.++++++ +||+++++++++.++||++++|++++++
T Consensus 2 ~~v~I~G~g~~~p~g~~~~~~w~~l~~g~~~~~~~~~~~~~~~~~~~~~~~-~fd~~~~~~~~~~~~~d~~~~l~~~aa~ 80 (408)
T 1j3n_A 2 RRVVVTGLGALTPIGVGQEAFHKAQLAGKSGVRPITRFDASALPVRIAAEV-DVDPGAYLDRKELRRLDRFVQYALIAAQ 80 (408)
T ss_dssp CCEEEEEEEEEETTEESHHHHHHHHHHTCCCEEECCSSCCTTSSCCEEECC-CCCGGGTSCHHHHTTSCHHHHHHHHHHH
T ss_pred CCEEEEEeEEECCCCCCHHHHHHHHHcCCCeeeeccccCcccCccceEEEE-ccChhhcCCHHHHHhcCHHHHHHHHHHH
Confidence 689999999999999999999999999999999999999888889999999 8999988999999999999999999999
Q ss_pred HHHHHcCCCCccccccccccceEEEeecCCCccchHHHHHHHHHhCCCCcCCcCcchhhhhhhHHHHhhhhCCCCcceee
Q 012221 136 KALEDADLGADISKKIDKERAGVLVGTGMGGLTVFSDGVQALIEKGHRKITPFFIPYAITNMGSALLAIDLGFMGPNYSI 215 (468)
Q Consensus 136 ~AL~dAgl~~~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~ia~~lgl~Gp~~~v 215 (468)
+||+|||+ ++++++..++||++|++.+++..+++++..+...+...++|+.+++.+.|.++.++++.||++||+++|
T Consensus 81 ~AL~dAGl---~~~~id~~~~gv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lgl~gp~~~v 157 (408)
T 1j3n_A 81 LALEDAGL---KPEDLDPERVGTLVGTGIGGMETWEAQSRVFLERGPNRISPFFIPMMIANMASAHIAMRYGFTGPSSTV 157 (408)
T ss_dssp HHHHHHTC---CGGGSCGGGEEEEEECSSCCHHHHHHHHHHHHHHCGGGSCTTHHHHHSTTHHHHHHHHHHTCCSCBCCB
T ss_pred HHHHHcCC---CccccCCCceEEEEEecCCcHHHHHHHHHHHHhcCcccCChhhhhhhhhhHHHHHHHHHhCCCCceeCc
Confidence 99999999 667888899999999999988888888888888888899999999999999999999999999999999
Q ss_pred cccChHHHHHHHHHHHHHHhCCCCEEEEEeeccccchhhhhHhhhccccccCCCCCCCCCCCCCCCCCCeeecceeEEEE
Q 012221 216 STACATSNYCFYAAANHIRRGEADLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWDKDRDGFVMGEGAGVLV 295 (468)
Q Consensus 216 ~~acas~l~Al~~A~~~I~~G~~d~~lvgG~e~~~~p~~~~~~~~~~~l~~~~~~~~~~~rpfd~~~~G~v~gEGaaavv 295 (468)
+++|+|++.||++|+++|++|+||++||||+|..++|..+..|...+.++.+++.|+..|||||.+++|+++|||++++|
T Consensus 158 ~~aCsS~l~Al~~A~~~I~~G~~d~aLvgG~e~~~~~~~~~~~~~~~~ls~~~~~p~~~~~pfd~~~dg~v~geGaaavv 237 (408)
T 1j3n_A 158 VTACATGADALGSALRMIQLGEADLVLAGGTEAAITPMAIGAFAVMRALSTRNEEPEKASRPFTLSRDGFVMGEGAGVLV 237 (408)
T ss_dssp CCGGGHHHHHHHHHHHHHHTTSCSEEEEEEEECCCSHHHHHHHHHTTCBCCCTTCHHHHCCTTBTTCCCBCBBCEEEEEE
T ss_pred cCchHHHHHHHHHHHHHHHcCCCCEEEEeeecccCCHHHHHHHHhcccccCCCCCCCcCcccCcCCCCceEEeeeEEEEE
Confidence 99999999999999999999999999999999989999999999999999877778889999999999999999999999
Q ss_pred ecchhHHHhcCCceEEEEEEEEEcCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCcCEEEEccCCCccCCHHHHHHHH
Q 012221 296 MESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAGVSPEEVNYINAHATSTLAGDLAEINAIK 375 (468)
Q Consensus 296 L~~~~~A~~~g~~i~a~i~g~~~~~d~~~~~~~~~~~~~~~~~i~~al~~Agl~~~dId~v~~h~~gt~~~D~~E~~al~ 375 (468)
|+++++|+++|+++|++|+|++.++|+++++.|.+.+.++.++|+++|+++|++|+||||||+|++||+.+|++|..++.
T Consensus 238 L~~~~~A~~~g~~i~a~i~g~~~~~d~~~~~~p~~~~~~~~~ai~~al~~Agl~~~dId~ve~Hgtgt~~gD~~E~~al~ 317 (408)
T 1j3n_A 238 LEAYEHAKKRGARIYAELVGFGRSADAHHITEPHPEGKGAALAMARALKDAGIAPEQVGYINAHGTSTPVGDRAEVLAIK 317 (408)
T ss_dssp EEEHHHHHHTTCCCCEEEEEEEEEECCSCSSCCCTTCHHHHHHHHHHHHHHTCCGGGCCEEECCCCSCHHHHHHHHHHHH
T ss_pred EeeHHHHHhCCCcEEEEEEEEEEcCCCCCCCCCCCCHHHHHHHHHHHHHHcCCCHHHcCEEEEeCCcCcccCHHHHHHHH
Confidence 99999999999999999999999999999999988999999999999999999999999999999999999999999999
Q ss_pred HHhcc-CCCceeeecccccCccccchhHHHHHHHHHHHhcCCcCCCCCCCCCCCCCCcccccccccccCccEEEEEcccc
Q 012221 376 KVFKN-TTGIKINATKSMIGHCLGAAGGLEAIATVKAITTGWLHPSINQFNPEPSVEFDTVANKKQQHEVNVAISNSFGF 454 (468)
Q Consensus 376 ~~f~~-~~~~~v~s~k~~~Gh~~~AsG~~~l~~~~~~l~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~g~ 454 (468)
++|+. ..+++++++|+++||+++|||++++++++++|++++||||+|+++|+|.+++++++ +.++++.+++++|||||
T Consensus 318 ~~~g~~~~~~~v~s~k~~~GH~~~AsG~~~li~~~l~l~~~~ipp~~~~~~~~~~~~~~~v~-~~~~~~~~~a~~~sfGf 396 (408)
T 1j3n_A 318 RVFGDHAKRLMVSSTKSMIGHLLGAAGAVEAIATVQALYHGVIPPTINLEDPDPELDLDFVP-EPREAKVDYALSNSFAF 396 (408)
T ss_dssp HHHHHHHTTCEEECTHHHHCBCGGGHHHHHHHHHHHHHHHTEECCCTTTTSBCTTSCSBCCS-SCEECCCSEEEEEEECT
T ss_pred HHhcCcCCCceEECchhhhccCHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcccCC-CCcCCCCCEEEEecccC
Confidence 99985 34699999999999999999999999999999999999999999999999999888 66677889999999999
Q ss_pred cCeeeEEEEeec
Q 012221 455 GGHNSVVAFSAF 466 (468)
Q Consensus 455 gG~n~~~vl~~~ 466 (468)
||+|+|+||+++
T Consensus 397 GG~na~~vl~~~ 408 (408)
T 1j3n_A 397 GGHNAVLAFKRV 408 (408)
T ss_dssp TSEEEEEEEECC
T ss_pred CcceEEEEEecC
Confidence 999999999975
|
| >2iwz_A 3-oxoacyl-[acyl-carrier-protein] synthase; mitochondria, mitochondrion, lipid synthesis, fatty acid SYN fatty acid biosynthesis; 1.65A {Homo sapiens} PDB: 2iwy_A 2c9h_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-82 Score=643.00 Aligned_cols=408 Identities=39% Similarity=0.633 Sum_probs=384.2
Q ss_pred CCcEEEEeeceeccCCCCHHHHHHHHHcCCCCccccCCCCCCCCCCccccccCC------CCCCCCCCccccccCCHHHH
Q 012221 55 KKRVVITGMGLVSVFGNDVDAYYNKLLDGESGITMIDRFDASKFPTRFGGQIRG------FSAEGYIDGKNDRRLDDCLR 128 (468)
Q Consensus 55 ~~~V~ItG~g~~~p~g~~~~~~~~~L~~G~~~i~~~~~~~~~~~~~~~~g~v~~------~d~~~~i~~~~~~~~d~~~~ 128 (468)
.++|+|||||+++|+|.+.++||++|.+|+++++++++|+...++.++++++++ ||++++++++++++|||+++
T Consensus 20 ~~~v~ItG~g~~~p~g~~~~~~w~~l~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~~~~~~~~~~~~~d~~~~ 99 (438)
T 2iwz_A 20 HRRVVITGIGLVTPLGVGTHLVWDRLIGGESGIVSLVGEEYKSIPCSVAAYVPRGSDEGQFNEQNFVSKSDIKSMSSPTI 99 (438)
T ss_dssp ECCEEEEEEEEEETTEESHHHHHHHHHTTCCCEEECCSGGGTTSSCCEEECCCBSSSTTSBCGGGTSCHHHHTTSCHHHH
T ss_pred CCCEEEEeeeEECCCCCCHHHHHHHHHcCCCccccCCchhcccCccceeeeeccccccccCChhhcCCHHHHHhcCHHHH
Confidence 468999999999999999999999999999999999999888888899999987 99988899999999999999
Q ss_pred HHHHHHHHHHHHcCCCCccc-cccccccceEEEeecCCCccchHHHHHHHHHhCCCCcCCcCcchhhhhhhHHHHhhhhC
Q 012221 129 YCIVAGKKALEDADLGADIS-KKIDKERAGVLVGTGMGGLTVFSDGVQALIEKGHRKITPFFIPYAITNMGSALLAIDLG 207 (468)
Q Consensus 129 l~l~a~~~AL~dAgl~~~~~-~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~ia~~lg 207 (468)
|+++++++||+|||+ ++ ++++..++||++|++.+++..+++++..+...+...++|+.+++.+.+.++.++++.||
T Consensus 100 l~l~aa~~AL~dAGl---~~~~~i~~~~~gv~vg~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~ia~~lg 176 (438)
T 2iwz_A 100 MAIGAAELAMKDSGW---HPQSEADQVATGVAIGMGMIPLEVVSETALNFQTKGYNKVSPFFVPKILVNMAAGQVSIRYK 176 (438)
T ss_dssp HHHHHHHHHHHHHTC---CCCSHHHHHTEEEEEEESCCCHHHHHHHHHHHHHHCGGGSCTTHHHHTCTTHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCC---CCcccccCcceEEEEecccCcHHHHHHHHHHHHhcCCcccChhhhhhhhhhHHHHHHHHHhC
Confidence 999999999999999 55 56778899999999999888888888888888888899999999999999999999999
Q ss_pred CCCcceeecccChHHHHHHHHHHHHHHhCCCCEEEEEeeccccchhhhhHhhhccccccCCCCCCCCCCCCCCCCCCeee
Q 012221 208 FMGPNYSISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWDKDRDGFVM 287 (468)
Q Consensus 208 l~Gp~~~v~~acas~l~Al~~A~~~I~~G~~d~~lvgG~e~~~~p~~~~~~~~~~~l~~~~~~~~~~~rpfd~~~~G~v~ 287 (468)
++||+++|+++|+|++.||++|+++|++|+||+|||||+|..++|..+..|..++.++.. .+|++.|||||.+++|+++
T Consensus 177 l~gp~~~v~taCsS~l~Al~~A~~~I~~G~~d~aLvgG~e~~~~p~~~~~~~~~~~ls~~-~~p~~~~~pfd~~~~G~~~ 255 (438)
T 2iwz_A 177 LKGPNHAVSTACTTGAHAVGDSFRFIAHGDADVMVAGGTDSCISPLSLAGFSRARALSTN-SDPKLACRPFHPKRDGFVM 255 (438)
T ss_dssp CCSCEECBCCGGGHHHHHHHHHHHHHHHTSCSEEEEEEEECCCSHHHHHHHHHTTCBCCC-SCTTTSCCTTCTTCCSBCB
T ss_pred CCCceeeecCchhHHHHHHHHHHHHHHcCCCCEEEEEeeehhcCHHHHHHHHhcCCcCCC-CCCCcccccCCCCCCCEEe
Confidence 999999999999999999999999999999999999999988899999999999988764 3477899999999999999
Q ss_pred cceeEEEEecchhHHHhcCCceEEEEEEEEEcCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCcCEEEEccCCCccCC
Q 012221 288 GEGAGVLVMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAGVSPEEVNYINAHATSTLAGD 367 (468)
Q Consensus 288 gEGaaavvL~~~~~A~~~g~~i~a~i~g~~~~~d~~~~~~~~~~~~~~~~~i~~al~~Agl~~~dId~v~~h~~gt~~~D 367 (468)
||||+++||+++++|+++|+++|++|+|++.++|+++++.|++++.++.++|+++|+++|++|+||||||+|+|||+.+|
T Consensus 256 geGAaavvL~~~~~A~~~g~~i~a~I~g~~~~~d~~~~t~p~~~~~~~~~ai~~Al~~Agl~p~dId~ve~HgtgT~~gD 335 (438)
T 2iwz_A 256 GEGAAVLVLEEYEHAVQRRARIYAEVLGYGLSGDAGHITAPDPEGEGALRCMAAALKDAGVQPEEISYINAHATSTPLGD 335 (438)
T ss_dssp BCEEEEEEEEEHHHHHHTTCCCCEEEEEEEEEECCSCSSSCCTTCHHHHHHHHHHHHHHTCCGGGCCEEECCCCSCHHHH
T ss_pred eceEEEEEeccHHHHHhCCCceEEEEecceecCCCCCCCCCCCCHHHHHHHHHHHHHHcCCCHHHcCEEEecCCCCcccC
Confidence 99999999999999999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcc-CCCceeeecccccCccccchhHHHHHHHHHHHhcCCcCCCCCCCCCCCCCCcccccccccccC---
Q 012221 368 LAEINAIKKVFKN-TTGIKINATKSMIGHCLGAAGGLEAIATVKAITTGWLHPSINQFNPEPSVEFDTVANKKQQHE--- 443 (468)
Q Consensus 368 ~~E~~al~~~f~~-~~~~~v~s~k~~~Gh~~~AsG~~~l~~~~~~l~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~--- 443 (468)
.+|.++|.++|+. ..+++|+++|+++||+++|||++++++++++|+++.||||+|+++|+|.+++++++.+.++++
T Consensus 336 ~~E~~al~~~fg~~~~~~~v~s~K~~~GH~~gAaG~~~li~~~l~l~~~~ipp~~~~~~~~p~~~~~~v~~~~~~~~~~~ 415 (438)
T 2iwz_A 336 AAENKAIKHLFKDHAYALAVSSTKGATGHLLGAAGAVEAAFTTLACYYQKLPPTLNLDCSEPEFDLNYVPLKAQEWKTEK 415 (438)
T ss_dssp HHHHHHHHHHHGGGGGTSEEECCHHHHCBCGGGHHHHHHHHHHHHHHHTEECCBTTCSCCCTTCCSBCCBSSCEECCCSS
T ss_pred HHHHHHHHHHHhccCCCcceecchhhhcCCHHHHHHHHHHHHHHHHhcCccCCCCCCCCCCCCCCccccCCCcccCCCCC
Confidence 9999999999986 346899999999999999999999999999999999999999999999999999887777676
Q ss_pred ccEEEEEcccccCeeeEEEEeec
Q 012221 444 VNVAISNSFGFGGHNSVVAFSAF 466 (468)
Q Consensus 444 ~~~~l~~s~g~gG~n~~~vl~~~ 466 (468)
.+++++|||||||+|+|+||+++
T Consensus 416 ~~~a~~~sfGfGG~na~~vl~~~ 438 (438)
T 2iwz_A 416 RFIGLTNSFGFGGTNATLCIAGL 438 (438)
T ss_dssp SCEEEEEEEETTTEEEEEEEECC
T ss_pred ccEEEEecCcCCCeeEEEEEeeC
Confidence 89999999999999999999975
|
| >1ox0_A Beta ketoacyl-acyl carrier protein synthase; transferase; 1.30A {Streptococcus pneumoniae} SCOP: c.95.1.1 c.95.1.1 PDB: 1oxh_A 2alm_A 2rjt_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-81 Score=639.22 Aligned_cols=414 Identities=42% Similarity=0.688 Sum_probs=390.3
Q ss_pred CCCCCCCCCcEEEEeeceeccCCCCHHHHHHHHHcCCCCccccCCCCCCCCCCccccccCCCCCCCCCCccccccCCHHH
Q 012221 48 PKREKDPKKRVVITGMGLVSVFGNDVDAYYNKLLDGESGITMIDRFDASKFPTRFGGQIRGFSAEGYIDGKNDRRLDDCL 127 (468)
Q Consensus 48 ~~~~~~~~~~V~ItG~g~~~p~g~~~~~~~~~L~~G~~~i~~~~~~~~~~~~~~~~g~v~~~d~~~~i~~~~~~~~d~~~ 127 (468)
|+..+..|++|+|||||+++|.|.+.++||++|.+|+++++++++|+...++.++++++++||++++++++++++|||++
T Consensus 15 ~~~~~m~m~~v~ItG~g~~~P~g~~~~~~w~~l~~g~~~i~~~~~~~~~~~~~~~~~~v~~fd~~~~~~~~~~~~~d~~~ 94 (430)
T 1ox0_A 15 PRGSHMKLNRVVVTGYGVTSPIGNTPEEFWNSLATGKIGIGGITKFDHSDFDVHNAAEIQDFPFDKYFVKKDTNRFDNYS 94 (430)
T ss_dssp CCCSSCCCCCEEEEEEEEEBTTBSSHHHHHHHHHHTCCCEEECCSSCCTTSSCCEEECCSSCCHHHHCCGGGGGTCCHHH
T ss_pred CCcccccCCCEEEEEEEEECCCcCCHHHHHHHHHcCCCeeeeCCcccccCCccceeeeccCCChhhcCCHHHHHhcCHHH
Confidence 44455446899999999999999999999999999999999999999888899999999999998889999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCccccccccccceEEEeecCCCccchHHHHHHHHHhCCCCcCCcCcchhhhhhhHHHHhhhhC
Q 012221 128 RYCIVAGKKALEDADLGADISKKIDKERAGVLVGTGMGGLTVFSDGVQALIEKGHRKITPFFIPYAITNMGSALLAIDLG 207 (468)
Q Consensus 128 ~l~l~a~~~AL~dAgl~~~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~ia~~lg 207 (468)
+|+++++++||+|||+ ++++++..++||++|++.+++....+++..+...+.+.++|+.+++.+.|.++++|++.||
T Consensus 95 ~l~l~aa~~AL~dAG~---~~~~i~~~~~gv~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~is~~lg 171 (430)
T 1ox0_A 95 LYALYAAQEAVNHANL---DVEALNRDRFGVIVASGIGGIKEIEDQVLRLHEKGPKRVKPMTLPKALPNMASGNVAMRFG 171 (430)
T ss_dssp HHHHHHHHHHHHHTTC---CTTTSCGGGEEEEEECSSCSHHHHHHHHHHHHHHCGGGSCTTHHHHHSTTHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCC---ChhhcCccceEEEEEecCCcHHHHHHHHHHHHhcCcccCChhhhhccchhHHHHHHHHHhc
Confidence 9999999999999999 6677888999999999998888778888888888888999999999999999999999999
Q ss_pred CCCcceeecccChHHHHHHHHHHHHHHhCCCCEEEEEeeccccchhhhhHhhhccccccCCCCCCCCCCCCCCCCCCeee
Q 012221 208 FMGPNYSISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWDKDRDGFVM 287 (468)
Q Consensus 208 l~Gp~~~v~~acas~l~Al~~A~~~I~~G~~d~~lvgG~e~~~~p~~~~~~~~~~~l~~~~~~~~~~~rpfd~~~~G~v~ 287 (468)
++||+++|+++|+|++.||++|+++|++|+||++||||+|..++|..+..|..++.++. ++.|+..|+|||.+++|+++
T Consensus 172 l~Gp~~~v~~aCsS~l~Al~~A~~~I~~G~~d~aLvgG~e~~~~p~~~~~~~~~~~ls~-~~~p~~~~~pFd~~~~g~~~ 250 (430)
T 1ox0_A 172 ANGVCKSINTACSSSNDAIGDAFRSIKFGFQDVMLVGGTEASITPFAIAGFQALTALST-TEDPTRASIPFDKDRNGFVM 250 (430)
T ss_dssp CCSCEECCCCGGGHHHHHHHHHHHHHHTTSCSEEEEEEEECCCSHHHHHHHHHTTCBCC-CSSTTSSSCTTBTTCCSBCB
T ss_pred CCCceEeecCchHHHHHHHHHHHHHHHcCCCCEEEEeeeccccCHHHHHHHHhCCCccC-CCCCCCCCCCCCCCCCCccc
Confidence 99999999999999999999999999999999999999999889988889999888875 44578899999999999999
Q ss_pred cceeEEEEecchhHHHhcCCceEEEEEEEEEcCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCcCEEEEccCCCccCC
Q 012221 288 GEGAGVLVMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAGVSPEEVNYINAHATSTLAGD 367 (468)
Q Consensus 288 gEGaaavvL~~~~~A~~~g~~i~a~i~g~~~~~d~~~~~~~~~~~~~~~~~i~~al~~Agl~~~dId~v~~h~~gt~~~D 367 (468)
||||+++||+++++|+++|+++|++|+|++.++|+++++.|.+.+.++.++|+++|+++|++|+||||||+|++||+.+|
T Consensus 251 geGAaavvL~~~~~A~~~g~~i~a~I~g~~~~~dg~~~~~p~~~~~~~~~ai~~al~~Agl~~~dId~ve~Hgtgt~~~D 330 (430)
T 1ox0_A 251 GEGSGMLVLESLEHAEKRGATILAEVVGYGNTCDAYHMTSPHPEGQGAIKAIKLALEEAEISPEQVAYVNAHGTSTPANE 330 (430)
T ss_dssp CCEEEEEEEEEHHHHHHTTCCCCEEEEEEEEEECCSCSSSCCTTCHHHHHHHHHHHHHHTCCGGGCCCEECCCCSCHHHH
T ss_pred cceEEEEEECcHHHHHhCCCceEEEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHHhCcCHHHcCEEEEeCCcCcccC
Confidence 99999999999999999999999999999999999999999888999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccCCCceeeecccccCccccchhHHHHHHHHHHHhcCCcCCCCCCCCCCCCCCcccccccccccCccEE
Q 012221 368 LAEINAIKKVFKNTTGIKINATKSMIGHCLGAAGGLEAIATVKAITTGWLHPSINQFNPEPSVEFDTVANKKQQHEVNVA 447 (468)
Q Consensus 368 ~~E~~al~~~f~~~~~~~v~s~k~~~Gh~~~AsG~~~l~~~~~~l~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (468)
..|..++.++|+. .++|++.|+++||+++|+|++++++++++|+++.+|||+|+++|+|.+++++++.+.+.++.+++
T Consensus 331 ~~E~~al~~~~g~--~~~v~s~k~~~GH~~gAaG~~~~i~~~~~l~~~~ipp~~~~~~~~p~~~~~~v~~~~~~~~~~~a 408 (430)
T 1ox0_A 331 KGESGAIVAVLGK--EVPVSSTKSFTGHLLGAAGAVEAIVTIEAMRHNFVPMTAGTSEVSDYIEANVVYGQGLEKEIPYA 408 (430)
T ss_dssp HHHHHHHHHHHCS--SSEEECTHHHHCBCGGGHHHHHHHHHHHHHHHTEECCBSSCCSBCTTCCSEECBSSCEECCCSEE
T ss_pred HHHHHHHHHHhCC--CceecccccccccchhhHHHHHHHHHHHHHhcCccCCCCCCCCCCCCCCcccCCCCCcCCCCCEE
Confidence 9999999999987 68999999999999999999999999999999999999999999999999988877777788999
Q ss_pred EEEcccccCeeeEEEEeecC
Q 012221 448 ISNSFGFGGHNSVVAFSAFK 467 (468)
Q Consensus 448 l~~s~g~gG~n~~~vl~~~~ 467 (468)
++|||||||+|+|+||++++
T Consensus 409 ~~~sfGfGG~na~~vl~~~~ 428 (430)
T 1ox0_A 409 ISNTFGFGGHNAVLAFKRWE 428 (430)
T ss_dssp EEEEEETTTEEEEEEEECCC
T ss_pred EEeCccCCCceEEEEEeecC
Confidence 99999999999999999985
|
| >1tqy_A Beta-ketoacyl synthase/acyl transferase; alpha-beta-alpha-beta-alpha, heterodimer, transferase; 2.00A {Streptomyces coelicolor} SCOP: c.95.1.1 c.95.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-82 Score=645.19 Aligned_cols=410 Identities=30% Similarity=0.508 Sum_probs=383.6
Q ss_pred CCcEEEEeeceeccCCCCHHHHHHHHHcCCCCccccCCCCCCCCCCccccccCCCCCCCC-CCccccccCCHHHHHHHHH
Q 012221 55 KKRVVITGMGLVSVFGNDVDAYYNKLLDGESGITMIDRFDASKFPTRFGGQIRGFSAEGY-IDGKNDRRLDDCLRYCIVA 133 (468)
Q Consensus 55 ~~~V~ItG~g~~~p~g~~~~~~~~~L~~G~~~i~~~~~~~~~~~~~~~~g~v~~~d~~~~-i~~~~~~~~d~~~~l~l~a 133 (468)
+++|+|||||+++|+|.+.++||++|++|+++++++++|+...++.++++++ +||+.+| +++++.++|||+++|++++
T Consensus 2 ~~~vaI~G~g~~~p~g~~~~~~w~~l~~g~~~i~~~~~~~~~~~~~~~~~~~-~fd~~~~~i~~~~~~~~d~~~~l~l~a 80 (424)
T 1tqy_A 2 KRRVVITGVGVRAPGGNGTRQFWELLTSGRTATRRISFFDPSPYRSQVAAEA-DFDPVAEGFGPRELDRMDRASQFAVAC 80 (424)
T ss_dssp -CCEEEEEEEEEETTEESHHHHHHHHHHTCCCEEECCSSCCTTSSCCEEECC-CCCHHHHTCCHHHHHHSCHHHHHHHHH
T ss_pred CCCEEEEeeEEECCCCCCHHHHHHHHHcCCCceeeCCCcccccCCcceeEEe-ccCHhhcCCCHHHHHhcCHHHHHHHHH
Confidence 4689999999999999999999999999999999999999888888899998 8998887 9999999999999999999
Q ss_pred HHHHHHHcCCCCccccccccccceEEEeecCCCccchHHHHHHHH--HhCCCCcCCcCcchhhhhhhHH----HHhhhhC
Q 012221 134 GKKALEDADLGADISKKIDKERAGVLVGTGMGGLTVFSDGVQALI--EKGHRKITPFFIPYAITNMGSA----LLAIDLG 207 (468)
Q Consensus 134 ~~~AL~dAgl~~~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~n~~a~----~ia~~lg 207 (468)
+++||+|||+ ++++++..++||++|++.+++...++.+..+. ..+.+.++|+.++..+.+..++ ++++.||
T Consensus 81 a~~AL~dAG~---~~~~i~~~~~gv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ia~~lg 157 (424)
T 1tqy_A 81 AREAFAASGL---DPDTLDPARVGVSLGSAVAAATSLEREYLLLSDSGRDWEVDAAWLSRHMFDYLVPSVMPAEVAWAVG 157 (424)
T ss_dssp HHHHHHHHTC---CTTTCCGGGEEEEEECSSTTHHHHHHHHHHHHTTTTCSSCCGGGCCTTTHHHHSTTHHHHHHHHHHT
T ss_pred HHHHHHHCCC---CchhcCCCceEEEEEeCCccHHHHHHHHHHHhhhccCccccChhhhcccccccccchhHhHHHHhcC
Confidence 9999999999 66778889999999999988887777777766 4566778888888877777666 9999999
Q ss_pred CCCcceeecccChHHHHHHHHHHHHHHhCCCCEEEEEeeccccchhhhhHhhhccccccCCCCCCCCCCCCCCCCCCeee
Q 012221 208 FMGPNYSISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWDKDRDGFVM 287 (468)
Q Consensus 208 l~Gp~~~v~~acas~l~Al~~A~~~I~~G~~d~~lvgG~e~~~~p~~~~~~~~~~~l~~~~~~~~~~~rpfd~~~~G~v~ 287 (468)
++||+++|+++|+|++.||++|+++|++|+||++||||+|..++|..+..|..++.++.++.+|++.|||||.+++|+++
T Consensus 158 l~gp~~~v~~aCsS~l~Al~~A~~~I~~G~~d~aLvgG~e~~~~~~~~~~~~~~~~ls~~~~~p~~~~rpfd~~~~G~v~ 237 (424)
T 1tqy_A 158 AEGPVTMVSTGCTSGLDSVGNAVRAIEEGSADVMFAGAADTPITPIVVACFDAIRATTARNDDPEHASRPFDGTRDGFVL 237 (424)
T ss_dssp CCSCEEEECCGGGHHHHHHHHHHHHHHHTSCSEEEEEEEECCCSHHHHHHHHHTTCBCCCCSCGGGCCCTTBTTCCCBCE
T ss_pred CCCceEeecCcccHHHHHHHHHHHHHHCCCCCEEEEeeecccCCHHHHHHHHhhccccCCCCCCCCCccCCCCCCCceee
Confidence 99999999999999999999999999999999999999999889999999999999988777788999999999999999
Q ss_pred cceeEEEEecchhHHHhcCCceEEEEEEEEEcCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCcCEEEEccCCCccCC
Q 012221 288 GEGAGVLVMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAGVSPEEVNYINAHATSTLAGD 367 (468)
Q Consensus 288 gEGaaavvL~~~~~A~~~g~~i~a~i~g~~~~~d~~~~~~~~~~~~~~~~~i~~al~~Agl~~~dId~v~~h~~gt~~~D 367 (468)
|||++++||+++++|+++|+++|++|+|++.++|+++++.|.+++.++.++|+++|+++|++|+||||||+|+|||+.+|
T Consensus 238 geGaaavvL~~~~~A~~~g~~i~a~I~g~~~~~dg~~~~~p~~~g~~~~~ai~~al~~agl~~~dId~ve~Hgtgt~~gD 317 (424)
T 1tqy_A 238 AEGAAMFVLEDYDSALARGARIHAEISGYATRCNAYHMTGLKADGREMAETIRVALDESRTDATDIDYINAHGSGTRQND 317 (424)
T ss_dssp ECEEEEEEEEEHHHHHHTTCCCCEEEEEEEEEECSSCSSCCCTTCHHHHHHHHHHHHHHTCCGGGCCEEECCCCCCHHHH
T ss_pred ecceeEEEeccHHHHHhCCCcEEEEEeeeEEcCCCCCCCCCCCCHHHHHHHHHHHHHHcCCCHHHCCEEEecCccCcCcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcc-CCCceeeecccccCccccchhHHHHHHHHHHHhcCCcCCCCCCCCCCCCCCcccccccccccCccE
Q 012221 368 LAEINAIKKVFKN-TTGIKINATKSMIGHCLGAAGGLEAIATVKAITTGWLHPSINQFNPEPSVEFDTVANKKQQHEVNV 446 (468)
Q Consensus 368 ~~E~~al~~~f~~-~~~~~v~s~k~~~Gh~~~AsG~~~l~~~~~~l~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (468)
.+|.++|.++|+. ..+++|++.|+++||+++|+|++++++++++|+++.+||++|+++|+|.+++++++.+.+.++.++
T Consensus 318 ~~E~~al~~~f~~~~~~~~v~s~k~~~GH~~~AaG~~~l~~~~l~l~~~~ipp~~~~~~~~p~~~~~~v~~~~~~~~~~~ 397 (424)
T 1tqy_A 318 RHETAAYKRALGEHARRTPVSSIKSMVGHSLGAIGSLEIAACVLALEHGVVPPTANLRTSDPECDLDYVPLEARERKLRS 397 (424)
T ss_dssp HHHHHHHHHHTGGGGGGSCEECTHHHHCBCTTTHHHHHHHHHHHHHHHCEECCBTTCCSBBTTBCSCCCBSSCEECCCSE
T ss_pred HHHHHHHHHHhcccCCCCeeeccccccccChhhhHHHHHHHHHHHHHcCCcCCCCCCCCCCCCCCcccCCCcccCCCCCE
Confidence 9999999999986 346899999999999999999999999999999999999999999999999999988888888999
Q ss_pred EEEEcccccCeeeEEEEeecCC
Q 012221 447 AISNSFGFGGHNSVVAFSAFKP 468 (468)
Q Consensus 447 ~l~~s~g~gG~n~~~vl~~~~~ 468 (468)
+++|||||||+|+|+||++++|
T Consensus 398 a~~~sfG~GG~n~~~vl~~~~~ 419 (424)
T 1tqy_A 398 VLTVGSGFGGFQSAMVLRDAET 419 (424)
T ss_dssp EEEEEEETTTEEEEEEEECHHH
T ss_pred EEEccccCCceEEEEEEccCCc
Confidence 9999999999999999998753
|
| >1tqy_B Actinorhodin polyketide putative beta-ketoacyl SY; alpha-beta-alpha-beta-alpha, heterodimer, transferase; 2.00A {Streptomyces coelicolor} SCOP: c.95.1.1 c.95.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=8.4e-82 Score=639.48 Aligned_cols=406 Identities=27% Similarity=0.430 Sum_probs=382.3
Q ss_pred CCCcEEEEeeceeccCCCCHHHHHHHHHcCCCCccccCCCCCCCCCCccccccCCCCCCCCCCccccccCCHHHHHHHHH
Q 012221 54 PKKRVVITGMGLVSVFGNDVDAYYNKLLDGESGITMIDRFDASKFPTRFGGQIRGFSAEGYIDGKNDRRLDDCLRYCIVA 133 (468)
Q Consensus 54 ~~~~V~ItG~g~~~p~g~~~~~~~~~L~~G~~~i~~~~~~~~~~~~~~~~g~v~~~d~~~~i~~~~~~~~d~~~~l~l~a 133 (468)
..++|+|||||+++|+|.+.++||++|++|+++++++++|+...++.+++++|++||+++++++++.++||++++|++++
T Consensus 7 ~~~~v~I~G~g~~~p~g~~~~~~w~~l~~g~~~i~~~~~~~~~~~~~~~~~~v~~fd~~~~~~~~~~~~~d~~~~l~l~a 86 (415)
T 1tqy_B 7 DDKSVLITGVGVVAPNGLGLAPYWSAVLDGRHGLGPVTRFDVSRYPATLAGQIDDFHAPDHIPGRLLPQTDPSTRLALTA 86 (415)
T ss_dssp ---CEEEEEEEEEETTEESHHHHHHHHHTTCCCEEECTTTTGGGSSCCEEECCCSCCHHHHSCTTTGGGCCHHHHHHHHH
T ss_pred CCCCEEEEeeEEECCCCCCHHHHHHHHHcCCCcEEECCcccccCCCcceEEEeCCCCchhcCCHHHHHhcCHHHHHHHHH
Confidence 35789999999999999999999999999999999999998888888999999999998889999999999999999999
Q ss_pred HHHHHHHcCCCCccccccccccceEEEeecCCCccchHHHHHHHHHhCCCCcCCcCcchhhhhhhHHHHhhhhCCCCcce
Q 012221 134 GKKALEDADLGADISKKIDKERAGVLVGTGMGGLTVFSDGVQALIEKGHRKITPFFIPYAITNMGSALLAIDLGFMGPNY 213 (468)
Q Consensus 134 ~~~AL~dAgl~~~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~ia~~lgl~Gp~~ 213 (468)
+++||+|||+ ++++++..++||++|++.+++...+++++.+...+...++|+.+++.+.+.++.++++.||++||++
T Consensus 87 a~~AL~dAGl---~~~~id~~~~gv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lgl~gp~~ 163 (415)
T 1tqy_B 87 ADWALQDAKA---DPESLTDYDMGVVTANACGGFDFTHREFRKLWSEGPKSVSVYESFAWFYAVNTGQISIRHGMRGPSS 163 (415)
T ss_dssp HHHHHHHTTC---CGGGSCGGGEEEEEECSSCSHHHHHHHHHHHHHTCGGGSCTTHHHHSSTTHHHHHHHHHHTCCSSCE
T ss_pred HHHHHHHcCC---CccccCCCCEEEEEeeCCccHHHHHHHHHHHHhcCcccCChhhhhcccchHHHHHHHHHhCCCCceE
Confidence 9999999999 6678888999999999999998888888888888888999999999999999999999999999999
Q ss_pred eecccChHHHHHHHHHHHHHHhCCCCEEEEEeeccccchhhhhHhhhccccccCCCCCCCCCCCCCCCCCCeeecceeEE
Q 012221 214 SISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWDKDRDGFVMGEGAGV 293 (468)
Q Consensus 214 ~v~~acas~l~Al~~A~~~I~~G~~d~~lvgG~e~~~~p~~~~~~~~~~~l~~~~~~~~~~~rpfd~~~~G~v~gEGaaa 293 (468)
+|+++|+|++.||++|+++|++| ||++||||+|..+++..+..|..++.|+. +++|++.|+|||.+++|+++|||+++
T Consensus 164 ~v~~aCsS~l~Al~~A~~~I~~G-~d~~LvgG~e~~~~~~~~~~~~~~~~ls~-~~~~~~~~~pfd~~~~G~~~geGaaa 241 (415)
T 1tqy_B 164 ALVAEQAGGLDALGHARRTIRRG-TPLVVSGGVDSALDPWGWVSQIASGRIST-ATDPDRAYLPFDERAAGYVPGEGGAI 241 (415)
T ss_dssp EEECGGGHHHHHHHHHHHHHHHT-CSEEEEEEEECCCSHHHHHHHHTTSCBCC-CSCGGGSCCTTSTTCCCBCBBCEEEE
T ss_pred eecCCccHHHHHHHHHHHHHHcC-CCEEEEeeecCcCCHHHHHHHHhccCccC-CCCCCCCcCCCCCCCCCcceeeeEEE
Confidence 99999999999999999999999 99999999999899999999999999986 55567899999999999999999999
Q ss_pred EEecchhHHHhcCC-ceEEEEEEEEEcCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCcCEEEEccCCCccCCHHHHH
Q 012221 294 LVMESLEHAMKRGA-PIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAGVSPEEVNYINAHATSTLAGDLAEIN 372 (468)
Q Consensus 294 vvL~~~~~A~~~g~-~i~a~i~g~~~~~d~~~~~~~~~~~~~~~~~i~~al~~Agl~~~dId~v~~h~~gt~~~D~~E~~ 372 (468)
+||+++++|+++|+ ++|++|+|++.++|+++++.|++ ++.++|+++|+++|++|+||||||+|||||+.+|.+|..
T Consensus 242 vvL~~~~~A~~~g~~~i~a~I~g~~~~~dg~~~~~p~~---~~~~ai~~al~~Agl~~~dId~ve~Hgtgt~~~D~~E~~ 318 (415)
T 1tqy_B 242 LVLEDSAAAEARGRHDAYGELAGCASTFDPAPGSGRPA---GLERAIRLALNDAGTGPEDVDVVFADGAGVPELDAAEAR 318 (415)
T ss_dssp EEEEEHHHHHHHTCCCCSEEEEEEEEEECCCTTCCCCC---SHHHHHHHHHHHHTCCGGGCCEEECCCCCSHHHHHHHHH
T ss_pred EEECcHHHHHHCCCCceEEEEEEEEEccCCCCCCCCCH---HHHHHHHHHHHHcCCCHhHCCEEEEeCCCCcCcCHHHHH
Confidence 99999999999999 99999999999999999888876 678999999999999999999999999999999999999
Q ss_pred HHHHHhccCCCceeeecccccCccccchhHHHHHHHHHHHhcCCcCCCCCCCCCCCCCCcccccccccccCccEEEEEcc
Q 012221 373 AIKKVFKNTTGIKINATKSMIGHCLGAAGGLEAIATVKAITTGWLHPSINQFNPEPSVEFDTVANKKQQHEVNVAISNSF 452 (468)
Q Consensus 373 al~~~f~~~~~~~v~s~k~~~Gh~~~AsG~~~l~~~~~~l~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~ 452 (468)
+++++|+.. .++|++.|+++||++||+|++++++++++|+++.+||++|+++|+|.+++++++.+.+++..+++++|||
T Consensus 319 al~~~~g~~-~~~v~s~K~~~GH~~gAaG~~~~~~~~~~l~~~~ipp~~~~~~~~p~~~~~~v~~~~~~~~~~~a~~~sf 397 (415)
T 1tqy_B 319 AIGRVFGRE-GVPVTVPKTTTGRLYSGGGPLDVVTALMSLREGVIAPTAGVTSVPREYGIDLVLGEPRSTAPRTALVLAR 397 (415)
T ss_dssp HHHHHHCTT-CSEEECGGGGTCBCGGGHHHHHHHHHHHHHHHTSBCCBCSCCCCCGGGCCEECBSSCBCCCCSEEEEEEE
T ss_pred HHHHHhCCC-CceEeccchhhccChHHHHHHHHHHHHHHHhcCCcCCCCCCCCCCCCCCccccCCCCccCCCCEEEEecC
Confidence 999999763 5999999999999999999999999999999999999999999999999998887777788999999999
Q ss_pred cccCeeeEEEEeecCC
Q 012221 453 GFGGHNSVVAFSAFKP 468 (468)
Q Consensus 453 g~gG~n~~~vl~~~~~ 468 (468)
||||+|+|+||++++|
T Consensus 398 GfgG~n~~~vl~~~~~ 413 (415)
T 1tqy_B 398 GRWGFNSAAVLRRFAP 413 (415)
T ss_dssp ETTTEEEEEEEEEC--
T ss_pred cCCCeEEEEEEecCCC
Confidence 9999999999999865
|
| >4ddo_A 3-oxoacyl-[acyl-carrier-protein] synthase 2; ssgcid, struct genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia vietnamiensis} PDB: 4f32_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-81 Score=642.90 Aligned_cols=414 Identities=40% Similarity=0.665 Sum_probs=390.2
Q ss_pred CCCCCcEEEEeeceeccCCCCHHHHHHHHHcCCCCccccCCCCCCCCCCccccccC--------CCCCCCCCCccccccC
Q 012221 52 KDPKKRVVITGMGLVSVFGNDVDAYYNKLLDGESGITMIDRFDASKFPTRFGGQIR--------GFSAEGYIDGKNDRRL 123 (468)
Q Consensus 52 ~~~~~~V~ItG~g~~~p~g~~~~~~~~~L~~G~~~i~~~~~~~~~~~~~~~~g~v~--------~~d~~~~i~~~~~~~~ 123 (468)
..|+++|+|||||+++|+|.+.++||++|++|+++++++++|+...++.+++|+++ +||+.++++++++++|
T Consensus 20 ~~m~~~v~ItG~g~~~P~g~~~~~~w~~l~~g~s~i~~~~~~~~~~~~~~~~g~v~~~~~~~~~~fd~~~~i~~~~~~~~ 99 (451)
T 4ddo_A 20 GSMTLRVVVTGIGIVSPLGCGKELVWQRLIGGGSGLRRLGDDIAGELSAKVGGTVQDVAEDPEGGFDPERSVPHKELRKM 99 (451)
T ss_dssp ----CCEEEEEEEEEETTEESHHHHHHHHHTTCCCEEECCHHHHTTSSCCEEECCCCTTTCTTTCCCGGGTSCHHHHTTS
T ss_pred ccCCCCEEEEEeEEECCCCCCHHHHHHHHHcCCCeeeeCCccccccccCccceEccccccccccccchhhhCCHHHHhhC
Confidence 44568999999999999999999999999999999999999888888889999987 7999988999999999
Q ss_pred CHHHHHHHHHHHHHHHHcCCCCcccccc-ccccceEEEeecCCCccchHHHHHHHHHhCCCCcCCcCcchhhhhhhHHHH
Q 012221 124 DDCLRYCIVAGKKALEDADLGADISKKI-DKERAGVLVGTGMGGLTVFSDGVQALIEKGHRKITPFFIPYAITNMGSALL 202 (468)
Q Consensus 124 d~~~~l~l~a~~~AL~dAgl~~~~~~~~-~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~i 202 (468)
|++++|+++++++||+|||+ +++++ +..++||++|++.++....++++..+...+...++|+.++..+.|.++++|
T Consensus 100 d~~~~L~l~Aa~~AL~dAGl---~~~~i~d~~~~gv~vgt~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i 176 (451)
T 4ddo_A 100 DRFIQMAMVAADEALAEAGW---APEAEQQRERTATVVASGIGGFPGLAEAVRIGETRGVRRLSPFTIPFFLSNLAAGQI 176 (451)
T ss_dssp CHHHHHHHHHHHHHHHHHTC---CCCSHHHHTTEEEEEECSSCSHHHHHHHHHHHHHTCGGGCCTTHHHHHCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCC---ChhhcccccceEEEEeecCCchHHHHHHHHHHHhcCccccCcchhhccccchHHHHH
Confidence 99999999999999999999 66677 888999999999999988888988888888889999999999999999999
Q ss_pred hhhhCCCCcceeecccChHHHHHHHHHHHHHHhCCCCEEEEEeeccccchhhhhHhhhccccccC-CCCCCCCCCCCCCC
Q 012221 203 AIDLGFMGPNYSISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAIIPIGLGGFVACRALSQR-NDDPQTASRPWDKD 281 (468)
Q Consensus 203 a~~lgl~Gp~~~v~~acas~l~Al~~A~~~I~~G~~d~~lvgG~e~~~~p~~~~~~~~~~~l~~~-~~~~~~~~rpfd~~ 281 (468)
++.||++||+++|+++|+|++.||++|+++|++|+||++||||+|..+++..+..|...+.++.. +++|.+.|+|||.+
T Consensus 177 a~~lgl~Gp~~~v~~aCsS~l~Al~~A~~~I~~G~~d~vLvgG~e~~~~~~~~~~~~~~~~ls~~~~~~~~~~~~pfd~~ 256 (451)
T 4ddo_A 177 SIKHRFRGPLGCPVTACAASVQAIGDAMRMIRTGEADVVLAGGAEAAFDKVSLGGFAAARALSTGFSEEPVRASRPFDRD 256 (451)
T ss_dssp HHHHTCCSCEECCCCGGGHHHHHHHHHHHHHHHTSCSEEEEEEEECCCSHHHHHHHHHTTCBCCSCTTSGGGSCCTTBTT
T ss_pred HHHhcCCCceeeecCccHHHHHHHHHHHHHHHCCCCCEEEEeccccccCHHHHHHHHHHhhhccCCCcCccccccccccC
Confidence 99999999999999999999999999999999999999999999999999999999999998875 55677899999999
Q ss_pred CCCeeecceeEEEEecchhHHHhcCCceEEEEEEEEEcCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCcCEEEEccC
Q 012221 282 RDGFVMGEGAGVLVMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAGVSPEEVNYINAHAT 361 (468)
Q Consensus 282 ~~G~v~gEGaaavvL~~~~~A~~~g~~i~a~i~g~~~~~d~~~~~~~~~~~~~~~~~i~~al~~Agl~~~dId~v~~h~~ 361 (468)
++|+++||||+++||+++++|+++|++++++|+|++.++|+++++.+.+++.++.++++++|+++|++|+||||||+|+|
T Consensus 257 ~~g~v~gdGAaavvL~~~~~A~~~g~~i~a~i~g~~~~~d~~~~~~~~~~~~~~~~ai~~al~~Agl~~~dId~ve~Hgt 336 (451)
T 4ddo_A 257 RDGFVMGEGAAMVVVESLDHALARGARPIAEIIGYGTTADAYHMTAGPDDGSGAMRAMKLALRMGDVAPEQVDYVNAHAT 336 (451)
T ss_dssp CCSBCBBCEEEEEEEEEHHHHHHTTCCCSEEEEEEEEEECCSCSSCCCTTCHHHHHHHHHHHHHHTCCGGGCCEEECCCC
T ss_pred CCCcEEeceEEEEEEeeHHHHHhCCCceEEEEEEEEEecCCCccCCCCCCHHHHHHHHHHHHHHcCCCHHHcCEEEecCC
Confidence 99999999999999999999999999999999999999999999999889999999999999999999999999999999
Q ss_pred CCccCCHHHHHHHHHHhccCCCceeeecccccCccccchhHHHHHHHHHHHhcCCcCCCCCCCCCCCCC-Cccccccccc
Q 012221 362 STLAGDLAEINAIKKVFKNTTGIKINATKSMIGHCLGAAGGLEAIATVKAITTGWLHPSINQFNPEPSV-EFDTVANKKQ 440 (468)
Q Consensus 362 gt~~~D~~E~~al~~~f~~~~~~~v~s~k~~~Gh~~~AsG~~~l~~~~~~l~~~~~pp~~~~~~~~~~~-~~~~~~~~~~ 440 (468)
||+.+|.+|..++.++|+...+++|+++|+++||++||||++++++++++|++++|||++|+++|+|.+ ++++++...+
T Consensus 337 gt~~~d~~E~~al~~~~~~~~~~~v~s~k~~~GH~~gAaG~~~~i~~~~~l~~~~ipp~~~~~~~~~~~~~~~~~~~~~~ 416 (451)
T 4ddo_A 337 STPVGDAGEIEALKTVFGVGAGPAISSTKSATGHLLGAAGAIEAAFSILALRDGVLPGTLNLEHPDPAADGLDLIGPAAR 416 (451)
T ss_dssp SCHHHHHHHHHHHHHHHCSSSSCEEECTHHHHCBCGGGHHHHHHHHHHHHHHHTEECCCTTCSSBCGGGTTSEECCSSCE
T ss_pred cCcccCHHHHHHHHHHhCCCCCCcccCchhhhccCHHHHHHHHHHHHHHHHhcCCcCCCCCCCCCCcccccccccCCCCC
Confidence 999999999999999998766799999999999999999999999999999999999999999999999 7888888877
Q ss_pred ccCccEEEEEcccccCeeeEEEEeecCC
Q 012221 441 QHEVNVAISNSFGFGGHNSVVAFSAFKP 468 (468)
Q Consensus 441 ~~~~~~~l~~s~g~gG~n~~~vl~~~~~ 468 (468)
.++.+++++|||||||+|+|+||+++++
T Consensus 417 ~~~~~~a~~~sfgfgG~na~~vl~~~~~ 444 (451)
T 4ddo_A 417 HVPVEIALSNGFGFGGVNASVLFRRYPS 444 (451)
T ss_dssp ECCCSEEEEEEEETTTEEEEEEEEESCC
T ss_pred CCCcCEEEEeeEcCCCceEEEEEeeCCC
Confidence 7889999999999999999999999864
|
| >2wge_A 3-oxoacyl-[acyl-carrier-protein] synthase 1; beta ketoacyl synthase I thiolactomycin, cytoplasm, transferase, acyltransferase; HET: TLM; 1.80A {Mycobacterium tuberculosis} PDB: 2wgd_A* 2wgg_A* 2wgf_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-81 Score=633.00 Aligned_cols=406 Identities=34% Similarity=0.588 Sum_probs=382.2
Q ss_pred CCCCcEEEEeeceeccCCCCHHHHHHHHHcCCCCccccCCCC--CCCCCCccccccCCCCCCCCCCccccccCCHHHHHH
Q 012221 53 DPKKRVVITGMGLVSVFGNDVDAYYNKLLDGESGITMIDRFD--ASKFPTRFGGQIRGFSAEGYIDGKNDRRLDDCLRYC 130 (468)
Q Consensus 53 ~~~~~V~ItG~g~~~p~g~~~~~~~~~L~~G~~~i~~~~~~~--~~~~~~~~~g~v~~~d~~~~i~~~~~~~~d~~~~l~ 130 (468)
..+++|+|||||+++|+|.++++||++|++|+++++++++|+ ...++.++++++++ |+.++++++++++|||+++|+
T Consensus 9 ~~~~~vaI~G~g~~~p~g~~~~~~w~~l~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~-d~~~~~~~~~~~~~d~~~~l~ 87 (416)
T 2wge_A 9 GGFPSVVVTAVTATTSISPDIESTWKGLLAGESGIHALEDEFVTKWDLAVKIGGHLKD-PVDSHMGRLDMRRMSYVQRMG 87 (416)
T ss_dssp TSSCCEEEEEEEEEESSCSSHHHHHHHHHTTCCCCEECCCHHHHHHTCSCCEEBCCSS-CGGGGCCHHHHHHSCHHHHHH
T ss_pred CCCCcEEEEeeEEECCCCCCHHHHHHHHHcCCCEEEeCCccccccccCCccEEEEeCC-chhhhCCHHHHHhcCHHHHHH
Confidence 345689999999999999999999999999999999999887 55678889999988 887789999999999999999
Q ss_pred HHHHHHHHHHcCCCCccccccccccceEEEeecCCCccchHHHHHHHHHhCCCCcCCcCcchhhhhhhHHHHhhhhCCCC
Q 012221 131 IVAGKKALEDADLGADISKKIDKERAGVLVGTGMGGLTVFSDGVQALIEKGHRKITPFFIPYAITNMGSALLAIDLGFMG 210 (468)
Q Consensus 131 l~a~~~AL~dAgl~~~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~ia~~lgl~G 210 (468)
++++++||+|||+ ++++..++||++|++.+++...++++..+...+...++|+.+++.+.+..+.+|++.||++|
T Consensus 88 l~aa~~AL~dAG~-----~~~~~~~~gv~vg~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~ia~~lgl~g 162 (416)
T 2wge_A 88 KLLGGQLWESAGS-----PEVDPDRFAVVVGTGLGGAERIVESYDLMNAGGPRKVSPLAVQMIMPNGAAAVIGLQLGARA 162 (416)
T ss_dssp HHHHHHHHHHTTC-----CCCCGGGEEEEEECCSCCCTHHHHHHHHHHHHCGGGSCTTHHHHHSTTHHHHHHHHHHTCCS
T ss_pred HHHHHHHHHHcCC-----CccCCCceEEEEeecCCcHHHHHHHHHHHHhcCcccCCchhhccccchhHHHHHHHHhccCC
Confidence 9999999999998 35678899999999999998888888888888888999999999999999999999999999
Q ss_pred cceeecccChHHHHHHHHHHHHHHhCCCCEEEEEeeccccchhhhhHhhhccccccCCCCCCCCCCCCCCCCCCeeecce
Q 012221 211 PNYSISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWDKDRDGFVMGEG 290 (468)
Q Consensus 211 p~~~v~~acas~l~Al~~A~~~I~~G~~d~~lvgG~e~~~~p~~~~~~~~~~~l~~~~~~~~~~~rpfd~~~~G~v~gEG 290 (468)
|+++|+++|+|++.||++|+++|++|++|++||||+|....+..+..|...+.++..+++|+..|+|||.+++|+++|||
T Consensus 163 p~~~v~~aCsS~l~Al~~A~~~I~~G~~d~~LvgG~e~~~~~~~~~~~~~~~~l~~~~~~~~~~~~pfd~~~dg~v~geG 242 (416)
T 2wge_A 163 GVMTPVSACSSGSEAIAHAWRQIVMGDADVAVCGGVEGPIEALPIAAFSMMRAMSTRNDEPERASRPFDKDRDGFVFGEA 242 (416)
T ss_dssp CEECCCCGGGHHHHHHHHHHHHHHTTSCSEEEEEECCCCCCHHHHHHHHTTTCBCCCTTSGGGSCCTTBTTCCCBCBBCE
T ss_pred CcccccCchHHHHHHHHHHHHHHHcCCCCEEEEeeecCccchHHHHHHHhcchhhccccCCcccccccccCCCCccccCc
Confidence 99999999999999999999999999999999999999888888899999999988777788999999999999999999
Q ss_pred eEEEEecchhHHHhcCCceEEEEEEEEEcCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCcCEEEEccCCCccCCHHH
Q 012221 291 AGVLVMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAGVSPEEVNYINAHATSTLAGDLAE 370 (468)
Q Consensus 291 aaavvL~~~~~A~~~g~~i~a~i~g~~~~~d~~~~~~~~~~~~~~~~~i~~al~~Agl~~~dId~v~~h~~gt~~~D~~E 370 (468)
++++||+++++|+++|+++|++|+|++.++|+++++.|++.+.++.++++++|+++|++|+||||||+|||||+.+|.+|
T Consensus 243 aaavvL~~~~~A~~~g~~~~a~i~g~~~~~dg~~~~~p~~~~~~~~~ai~~al~~agl~~~dId~ve~HgtgT~~gD~~E 322 (416)
T 2wge_A 243 GALMLIETEEHAKARGAKPLARLLGAGITSDAFHMVAPAADGVRAGRAMTRSLELAGLSPADIDHVNAHGTATPIGDAAE 322 (416)
T ss_dssp EEEEEEEEHHHHHHTTCCCSEEEEEEEEEECCSCSSSCCTTCHHHHHHHHHHHHHHTCCGGGCCEEECCCCCCHHHHHHH
T ss_pred eEEEEECcHHHHHHCCCceEEEEEEEEEecCCCCccCCCCChHHHHHHHHHHHHHcCCCHHHCCEEEECCCCCcCCCHHH
Confidence 99999999999999999999999999999999999888888999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCCCceeeecccccCccccchhHHHHHHHHHHHhcCCcCCCCCCCCCCCCCCcccccccccccCccEEEEE
Q 012221 371 INAIKKVFKNTTGIKINATKSMIGHCLGAAGGLEAIATVKAITTGWLHPSINQFNPEPSVEFDTVANKKQQHEVNVAISN 450 (468)
Q Consensus 371 ~~al~~~f~~~~~~~v~s~k~~~Gh~~~AsG~~~l~~~~~~l~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 450 (468)
..+++.+ +. .++++++.|+++||++||+|++++++++++|+++++|||+|+++|+|.|++++++.+.+..+.|++++|
T Consensus 323 ~~al~~~-~~-~~~~v~s~k~~~GH~~gAsG~~~~i~~~l~l~~~~ipp~~~~~~~~p~~~~~~v~~~~~~~~~~~a~~~ 400 (416)
T 2wge_A 323 ANAIRVA-GC-DQAAVYAPKSALGHSIGAVGALESVLTVLTLRDGVIPPTLNYETPDPEIDLDVVAGEPRYGDYRYAVNN 400 (416)
T ss_dssp HHHHHHT-TC-TTSEEECTHHHHCBCGGGHHHHHHHHHHHHHHHTEECCCTTCCSBCTTTCCEECCSSCEECCCCEEEEE
T ss_pred HHHHHHh-cc-CCCCccCCcccccCcHHHHHHHHHHHHHHHHhcCCcCCCCCCCCCCCCCCcccCCCCCccCCCCEEEEe
Confidence 9999998 43 368999999999999999999999999999999999999999999999999998877767788999999
Q ss_pred cccccCeeeEEEEeec
Q 012221 451 SFGFGGHNSVVAFSAF 466 (468)
Q Consensus 451 s~g~gG~n~~~vl~~~ 466 (468)
||||||+|+|+||++|
T Consensus 401 sfGfGG~na~~vl~~~ 416 (416)
T 2wge_A 401 SFGFGGHNVALAFGRY 416 (416)
T ss_dssp EEETTTEEEEEEEECC
T ss_pred CcccCceeEEEEEEeC
Confidence 9999999999999985
|
| >2vba_A 3-oxoacyl-[acyl-carrier-protein] synthase 1; cytoplasm, antibiotic, transferase, amino-thiazole, acyltransferase, lipid synthesis; HET: P4T; 1.36A {Escherichia coli} SCOP: c.95.1.1 c.95.1.1 PDB: 1fj4_A* 1g5x_A 2aq7_A* 1fj8_A* 2aqb_A 2bui_A 2buh_A 2vb7_A* 2vb8_A 2vb9_A* 1h4f_A 1dd8_A 2cdh_A 2bz4_A 2byz_A 2bz3_A* 2byy_A* 1f91_A* 2cf2_A 2byw_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-81 Score=635.97 Aligned_cols=401 Identities=37% Similarity=0.601 Sum_probs=370.1
Q ss_pred CcEEEEeeceeccCCCCHHHHHHHHHcCCCCccccCCCCCCCCCCccccccCCCCCCCCCCccccccCCHHHHHHHHHHH
Q 012221 56 KRVVITGMGLVSVFGNDVDAYYNKLLDGESGITMIDRFDASKFPTRFGGQIRGFSAEGYIDGKNDRRLDDCLRYCIVAGK 135 (468)
Q Consensus 56 ~~V~ItG~g~~~p~g~~~~~~~~~L~~G~~~i~~~~~~~~~~~~~~~~g~v~~~d~~~~i~~~~~~~~d~~~~l~l~a~~ 135 (468)
++|+|||||+++|+|.+.++||++|++|+++++++++|+...++.+++++++ ||+++++++++.++|||+++|++++++
T Consensus 2 ~~v~ItG~g~~~p~g~~~~~~w~~l~~g~~~i~~~~~~~~~~~~~~~~~~v~-fd~~~~~~~~~~~~~d~~~~l~l~aa~ 80 (406)
T 2vba_A 2 KRAVITGLGIVSSIGNNQQEVLASLREGRSGITFSQELKDSGMRSHVWGNVK-LDTTGLIDRKVVRFMSDASIYAFLSME 80 (406)
T ss_dssp CCEEEEEEEEEBTTBSSHHHHHHHHHHTCCCEEECHHHHHTTCSCCEEECCC-CCCTTSSCHHHHTTCCHHHHHHHHHHH
T ss_pred CCEEEEeeEEECCCCCCHHHHHHHHHcCCCeEEeCCcccccCCccceEEEec-CChhhcCCHHHHHhcCHHHHHHHHHHH
Confidence 6899999999999999999999999999999999998887788888999998 999988999999999999999999999
Q ss_pred HHHHHcCCCCcccccccc-ccceEEEeecCCCccchHHHHHHHH-HhCCCCcCCcCcchhhhhhhHHHHhhhhCCCCcce
Q 012221 136 KALEDADLGADISKKIDK-ERAGVLVGTGMGGLTVFSDGVQALI-EKGHRKITPFFIPYAITNMGSALLAIDLGFMGPNY 213 (468)
Q Consensus 136 ~AL~dAgl~~~~~~~~~~-~~~gv~~g~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~n~~a~~ia~~lgl~Gp~~ 213 (468)
+||+|||+ ++++++. .++||++|++.+++...++++..+. ..+...++|+.+++.+.+.+++++++.||++||++
T Consensus 81 ~Al~dAg~---~~~~i~~~~~~gv~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~is~~lgl~Gp~~ 157 (406)
T 2vba_A 81 QAIADAGL---SPEAYQNNPRVGLIAGSGGGSPRFQVFGADAMRGPRGLKAVGPYVVTKAMASGVSACLATPFKIHGVNY 157 (406)
T ss_dssp HHHHHHTC---CHHHHTTCTTEEEEEECSSCCHHHHHHHHHHHTSTTTHHHHCTTHHHHHSTTHHHHHHHTTTTCCSCEE
T ss_pred HHHHHCCC---ChhHcCCCCCEEEEEEECCcchHHHHHHHHHHHhccCccccChhhhhhhhhHHHHHHHHHhccCCCcee
Confidence 99999999 6667777 8999999999998877777776665 44555678999999999999999999999999999
Q ss_pred eecccChHHHHHHHHHHHHHHhCCCCEEEEEeeccccchhhhhHhhhcccccc-CCCCCCCCCCCCCCCCCCeeecceeE
Q 012221 214 SISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAIIPIGLGGFVACRALSQ-RNDDPQTASRPWDKDRDGFVMGEGAG 292 (468)
Q Consensus 214 ~v~~acas~l~Al~~A~~~I~~G~~d~~lvgG~e~~~~p~~~~~~~~~~~l~~-~~~~~~~~~rpfd~~~~G~v~gEGaa 292 (468)
+|+++|+|++.||++|+++|++|+||++||||+|..+++..+. |..++.++. ++++|++.|||||.+++|+++|||++
T Consensus 158 ~v~taCsS~l~Al~~A~~~I~~G~~d~alvgG~e~~~~~~~~~-~~~~~~ls~~~~~~p~~~~~pfd~~~~G~v~gEGaa 236 (406)
T 2vba_A 158 SISSACATSAHCIGNAVEQIQLGKQDIVFAGGGEELCWEMACE-FDAMGALSTKYNDTPEKASRTYDAHRDGFVIAGGGG 236 (406)
T ss_dssp EEECGGGHHHHHHHHHHHHHHTTSCSEEEEEEEECCCHHHHHH-HHHTTCBCCSCTTSGGGSCCTTBTTCCSBCBBCEEE
T ss_pred eeccchhHHHHHHHHHHHHHHcCCCCEEEEeeeccccChHHHH-HhhccccccccCCCCccccCcCcCCCCceEeeceEE
Confidence 9999999999999999999999999999999999988887777 999998885 45557889999999999999999999
Q ss_pred EEEecchhHHHhcCCceEEEEEEEEEcCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCcCEEEEccCCCccCCHHHHH
Q 012221 293 VLVMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAGVSPEEVNYINAHATSTLAGDLAEIN 372 (468)
Q Consensus 293 avvL~~~~~A~~~g~~i~a~i~g~~~~~d~~~~~~~~~~~~~~~~~i~~al~~Agl~~~dId~v~~h~~gt~~~D~~E~~ 372 (468)
++|||++++|+++|++||++|+|++.++|+++++.|+ +.++.++|+++|+++| +||||||+|||||+.+|.+|.+
T Consensus 237 avvL~~~~~A~~~g~~i~a~I~g~~~~~dg~~~t~p~--~~~~~~ai~~al~~ag---~dId~ve~HgtgT~~gD~~E~~ 311 (406)
T 2vba_A 237 MVVVEELEHALARGAHIYAEIVGYGATSDGADMVAPS--GEGAVRCMKMAMHGVD---TPIDYLNSHGTSTPVGDVKELA 311 (406)
T ss_dssp EEEEEEHHHHHHTTCCCCEEEEEEEEEECCSCTTSCC--SHHHHHHHHHHHTTCC---SCCCEEECCCCSCHHHHHHHHH
T ss_pred EEEeCcHHHHHHCCCeEEEEEEEEEEcCCCCCCCCCC--HHHHHHHHHHHHhhCC---CCccEEEeeCccCcccCHHHHH
Confidence 9999999999999999999999999999999887765 7889999999999999 8999999999999999999999
Q ss_pred HHHHHhccCCCceeeecccccCccccchhHHHHHHHHHHHhcCCcCCCCCCCCCCCCCC-cccccccccccCccEEEEEc
Q 012221 373 AIKKVFKNTTGIKINATKSMIGHCLGAAGGLEAIATVKAITTGWLHPSINQFNPEPSVE-FDTVANKKQQHEVNVAISNS 451 (468)
Q Consensus 373 al~~~f~~~~~~~v~s~k~~~Gh~~~AsG~~~l~~~~~~l~~~~~pp~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~s 451 (468)
+|.++|+.. .++|++.|+++||+++|||++++++++++|+++.+|||+|+++|+|.++ ++++++..+. +.|++++||
T Consensus 312 al~~~fg~~-~~~v~s~K~~~GH~~gAaG~~~~i~~~l~l~~~~ipp~~~~~~~~~~~~~~~~v~~~~~~-~~~~a~~~s 389 (406)
T 2vba_A 312 AIREVFGDK-SPAISATKAMTGHSLGAAGVQEAIYSLLMLEHGFIAPSINIEELDEQAAGLNIVTETTDR-ELTTVMSNS 389 (406)
T ss_dssp HHHHHHTTC-CCEEECTHHHHCBCGGGHHHHHHHHHHHHHHHTEECCCCCCSSBCTTCTTSEECCSCEEC-CCCEEEEEE
T ss_pred HHHHHhCcC-CCceeCchhhhcccHHHHHHHHHHHHHHHHhcCccCCCCCCCCCCCCccccccCCcccCC-CCCEEEEcC
Confidence 999999863 4899999999999999999999999999999999999999999999998 8888766554 789999999
Q ss_pred ccccCeeeEEEEeecCC
Q 012221 452 FGFGGHNSVVAFSAFKP 468 (468)
Q Consensus 452 ~g~gG~n~~~vl~~~~~ 468 (468)
|||||+|+|+||+++++
T Consensus 390 fGfgG~na~~vl~~~~~ 406 (406)
T 2vba_A 390 FGFGGTNATLVMRKLKD 406 (406)
T ss_dssp EETTTEEEEEEEECC--
T ss_pred CCCCCeEEEEEEEeCCC
Confidence 99999999999999864
|
| >2gp6_A 3-oxoacyl-[acyl-carrier-protein] synthase 2; thiolase fold, structural genomics, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=100.00 E-value=9e-81 Score=633.03 Aligned_cols=406 Identities=33% Similarity=0.555 Sum_probs=382.7
Q ss_pred CCCcEEEEeeceeccCCCCHHHHHHHHHcCCCCccccCCCC--CCCCCCccccccCCCCCCCCCCccccccCCHHHHHHH
Q 012221 54 PKKRVVITGMGLVSVFGNDVDAYYNKLLDGESGITMIDRFD--ASKFPTRFGGQIRGFSAEGYIDGKNDRRLDDCLRYCI 131 (468)
Q Consensus 54 ~~~~V~ItG~g~~~p~g~~~~~~~~~L~~G~~~i~~~~~~~--~~~~~~~~~g~v~~~d~~~~i~~~~~~~~d~~~~l~l 131 (468)
.+++|+|||||+++|+|.++++||++|++|+++++++++|+ ...++.++++++++ |+.++++++++++|||+++|++
T Consensus 26 ~~~~vaI~G~g~~~p~g~~~~~~w~~l~~g~~~i~~~~~~~~~~~~~~~~~~~~v~~-d~~~~~~~~~~~~~d~~~~l~l 104 (434)
T 2gp6_A 26 AFPYVVVTGIAMTTALATDAETTWKLLLDRQSGIRTLDDPFVEEFDLPVRIGGHLLE-EFDHQLTRIELRRMGYLQRMST 104 (434)
T ss_dssp TSCCEEEEEEEEECSSCSSHHHHHHHHHTTCCCEEECCCHHHHHHCCSCCEEECCSC-CSTTSSCHHHHHTCCHHHHHHH
T ss_pred CCCCEEEEeeEEeCCCCCCHHHHHHHHHcCCCeeeeCCccccccccCccceeEEcCC-chhhhCCHHHHHhCCHHHHHHH
Confidence 35689999999999999999999999999999999999887 55678889999987 7777899999999999999999
Q ss_pred HHHHHHHHHcCCCCccccccccccceEEEeecCCCccchHHHHHHHHHhCCCCcCCcCcchhhhhhhHHHHhhhhCCCCc
Q 012221 132 VAGKKALEDADLGADISKKIDKERAGVLVGTGMGGLTVFSDGVQALIEKGHRKITPFFIPYAITNMGSALLAIDLGFMGP 211 (468)
Q Consensus 132 ~a~~~AL~dAgl~~~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~ia~~lgl~Gp 211 (468)
+++++||+|||+ ++++..++||++|++.+++....+++..+...+...++|+.+++.+.|.++++|++.||++||
T Consensus 105 ~aa~~ALedAG~-----~~~~~~~igv~vgt~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~is~~lgl~Gp 179 (434)
T 2gp6_A 105 VLSRRLWENAGS-----PEVDTNRLMVSIGTGLGSAEELVFSYDDMRARGMKAVSPLTVQKYMPNGAAAAVGLERHAKAG 179 (434)
T ss_dssp HHHHHHHHHTTC-----CCCCTTSEEEEEECSSCSCHHHHHHHHHHTTSCSSSSCTTHHHHHSTTHHHHHHHHHSCCCSC
T ss_pred HHHHHHHHhcCC-----CccCCCceEEEEccccccHHHHHHHHHHHHhcCccccChhhhhccchhhHHHHHhhhhcCCCC
Confidence 999999999998 346788999999999999888888888887788888999999999999999999999999999
Q ss_pred ceeecccChHHHHHHHHHHHHHHhCCCCEEEEEeeccccchhhhhHhhhcc-ccccCCCCCCCCCCCCCCCCCCeeecce
Q 012221 212 NYSISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAIIPIGLGGFVACR-ALSQRNDDPQTASRPWDKDRDGFVMGEG 290 (468)
Q Consensus 212 ~~~v~~acas~l~Al~~A~~~I~~G~~d~~lvgG~e~~~~p~~~~~~~~~~-~l~~~~~~~~~~~rpfd~~~~G~v~gEG 290 (468)
+++|+++|+|++.||++|+++|++|+||++||||+|....+..+..|..++ .++.++..|++.|+|||.+++|+++|||
T Consensus 180 ~~~v~~aCsS~l~Al~~A~~~I~~G~~d~aLvgG~e~~~~~~~~~~~~~~~~~ls~~~~~p~~~~~pfd~~~~g~v~gdG 259 (434)
T 2gp6_A 180 VMTPVSACASGAEAIARAWQQIVLGEADAAICGGVETRIEAVPIAGFAQMRIVMSTNNDDPAGACRPFDRDRDGFVFGEG 259 (434)
T ss_dssp EECEECGGGHHHHHHHHHHHHHHHTSCSEEEEEEECCCCCHHHHHHHHTTTSSCCCCTTCTTTSCCSSBTTCCCCCBBCC
T ss_pred eEEeCCCCcHHHHHHHHHHHHHHcCCCCEEEEeeeccccCHHHHHHHHHHHHHhcCCCCCCCCceecccccCCCcceecc
Confidence 999999999999999999999999999999999999988998899999998 7887777788999999999999999999
Q ss_pred eEEEEecchhHHHhcCCceEEEEEEEEEcCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCcCEEEEccCCCccCCHHH
Q 012221 291 AGVLVMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAGVSPEEVNYINAHATSTLAGDLAE 370 (468)
Q Consensus 291 aaavvL~~~~~A~~~g~~i~a~i~g~~~~~d~~~~~~~~~~~~~~~~~i~~al~~Agl~~~dId~v~~h~~gt~~~D~~E 370 (468)
++++||+++++|+++|+++|++|+|++.++|+++++.|++.+.++.++++++|+++|++|+||||||+|+++|+.+|.+|
T Consensus 260 AaavvL~~~~~A~~~g~~i~a~I~g~~~~~Dg~~~~~p~~~~~~~~~ai~~al~~Agl~~~dId~ve~Hgtgt~~~D~~E 339 (434)
T 2gp6_A 260 GALLLIETEEHAKARGANILARIMGASITSDGFHMVAPDPNGERAGHAITRAIQLAGLAPGDIDHVNAHATGTQVGDLAE 339 (434)
T ss_dssp EEEEEEEEHHHHHTTTCCCCEEEEEEEEEECCSCSSSCCTTCHHHHHHHHHHHHHTTCCTTTEEEEECCCCSCHHHHHHH
T ss_pred eEEEEeCcHHHHHHCCCceEEEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHHcCCCHHHcCEEEEeCCcCccchHHH
Confidence 99999999999999999999999999999999999989888999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCCCceeeecccccCccccchhHHHHHHHHHHHhcCCcCCCCCCCCCCCCCCcccccccccccCccEEEEE
Q 012221 371 INAIKKVFKNTTGIKINATKSMIGHCLGAAGGLEAIATVKAITTGWLHPSINQFNPEPSVEFDTVANKKQQHEVNVAISN 450 (468)
Q Consensus 371 ~~al~~~f~~~~~~~v~s~k~~~Gh~~~AsG~~~l~~~~~~l~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 450 (468)
.++|.++|+.. +++++++|+++||+++|+|++++++++++|+++.+|||+|+++|+|.|++++++.+.++++.|++++|
T Consensus 340 ~~al~~~fg~~-~~~v~s~k~~~GH~~gAaG~~~~i~~~~~l~~~~ipp~~~~~~~~p~~~~~~v~~~~~~~~~~~a~~~ 418 (434)
T 2gp6_A 340 GRAINNALGGN-RPAVYAPKSALGHSVGAVGAVESILTVLALRDQVIPPTLNLVNLDPEIDLDVVAGEPRPGNYRYAINN 418 (434)
T ss_dssp HHHHHHHHTTC-CCEECCTHHHHCBCTTTHHHHHHHHHHHHHHHSCCCCCSSCSSBCTTCCCEECCSSCCCSCCCEEEEE
T ss_pred HHHHHHHhccC-CCCcccchhhhcCchhhhHHHHHHHHHHHHhcCccCCCCCCCCCCCCCCccccCCCccCCCCCEEEEe
Confidence 99999999864 79999999999999999999999999999999999999999999999999999887777889999999
Q ss_pred cccccCeeeEEEEeec
Q 012221 451 SFGFGGHNSVVAFSAF 466 (468)
Q Consensus 451 s~g~gG~n~~~vl~~~ 466 (468)
||||||+|+|+||++|
T Consensus 419 sfGfGG~na~~vl~~~ 434 (434)
T 2gp6_A 419 SFGFGGHNVAIAFGRY 434 (434)
T ss_dssp EEETTTEEEEEEEECC
T ss_pred CCcCCCeeEEEEEEeC
Confidence 9999999999999985
|
| >3mqd_A Beta-ketoacyl synthase; ssgcid, ALS collaborative crystallography, beta-ketoacyl SYN brucella melitensis, fragments of LIFE; HET: 3MQ; 1.25A {Brucella melitensis biovar abortus} PDB: 3lrf_A* 3u0e_A* 3u0f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-81 Score=636.13 Aligned_cols=404 Identities=37% Similarity=0.586 Sum_probs=374.6
Q ss_pred CCCcEEEEeeceeccCCCCHHHHHHHHHcCCCCccccCCCCCCCCCCccccccCCCCCCCCCCccccccCCHHHHHHHHH
Q 012221 54 PKKRVVITGMGLVSVFGNDVDAYYNKLLDGESGITMIDRFDASKFPTRFGGQIRGFSAEGYIDGKNDRRLDDCLRYCIVA 133 (468)
Q Consensus 54 ~~~~V~ItG~g~~~p~g~~~~~~~~~L~~G~~~i~~~~~~~~~~~~~~~~g~v~~~d~~~~i~~~~~~~~d~~~~l~l~a 133 (468)
.+++|||||||+++|+|.+.++||++|++|+++++++++|+...++.+++|+ .+||++++++++++++||++++|++++
T Consensus 21 ~m~~V~ItG~g~~~p~g~~~~~~w~~l~~g~~~i~~~~~~~~~~~~~~~~g~-~~fd~~~~i~~~~~~~~d~~~~l~~~a 99 (428)
T 3mqd_A 21 SMRRVVVTGMGIVSSIGSNTEEVTASLREAKSGISRAEEYAELGFRCQVHGA-PDIDIESLVDRRAMRFHGRGTAWNHIA 99 (428)
T ss_dssp -CCCEEEEEEEEEBTTBSSHHHHHHHHHHTCCCEEECHHHHHTTCSCCEEEC-CCCCHHHHSCTGGGTTCCHHHHHHHHH
T ss_pred CCCCEEEEeeEEECCCcCCHHHHHHHHHcCCCcceeCCcccccCCCcccccc-cCCChhhcCCHHHHhhCCHHHHHHHHH
Confidence 3579999999999999999999999999999999999988877888888888 589998889999999999999999999
Q ss_pred HHHHHHHcCCCCccccccccccceEEEeecCCCccchHHHHHHHHHhCCCCcCCcCcchhhhhhhHHHHhhhhCCCCcce
Q 012221 134 GKKALEDADLGADISKKIDKERAGVLVGTGMGGLTVFSDGVQALIEKGHRKITPFFIPYAITNMGSALLAIDLGFMGPNY 213 (468)
Q Consensus 134 ~~~AL~dAgl~~~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~ia~~lgl~Gp~~ 213 (468)
+++||+|||+ ++++++..++||++|++.+++...+++...+...+...++|+.+++.+.+.++.++++.||++||++
T Consensus 100 a~~Al~dAGl---~~~~i~~~~~Gv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lgl~gp~~ 176 (428)
T 3mqd_A 100 MDQAIADAGL---TEEEVSNERTGIIMGSGGPSTRTIVDSADITREKGPKRVGPFAVPKAMSSTASATLATFFKIKGINY 176 (428)
T ss_dssp HHHHHHHHTC---CHHHHSSTTEEEEEEESSCCHHHHHHHHHHHHHHCGGGGCTTCHHHHSTTHHHHHHHHHTTCCSCEE
T ss_pred HHHHHHHcCC---ChhHccccceEEEEccCCCchHHHHHHHHHHHhcCccccCchhhccccccHHHHHHHHHcCCCCcee
Confidence 9999999999 6778889999999999988887777888888888889999999999999999999999999999999
Q ss_pred eecccChHHHHHHHHHHHHHHhCCCCEEEEEeeccccchhhhhHhhhccccccC-CCCCCCCCCCCCCCCCCeeecceeE
Q 012221 214 SISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAIIPIGLGGFVACRALSQR-NDDPQTASRPWDKDRDGFVMGEGAG 292 (468)
Q Consensus 214 ~v~~acas~l~Al~~A~~~I~~G~~d~~lvgG~e~~~~p~~~~~~~~~~~l~~~-~~~~~~~~rpfd~~~~G~v~gEGaa 292 (468)
+|+++|+||+.||++|+++|++|+||++||||+|. +++.....|..++.++.. .+.|++.|||||.+++|+++||||+
T Consensus 177 tv~~aCsSgl~Ai~~A~~~I~~G~~d~alvgG~e~-~s~~~~~~~~~~~~ls~~~~~~p~~~~rpfd~~~~G~v~gEGAa 255 (428)
T 3mqd_A 177 SISSACATSNHCIGNAYEMIQYGKQDRMFAGGCED-LDWTLSVLFDAMGAMSSKYNDTPSTASRAYDKNRDGFVIAGGAG 255 (428)
T ss_dssp CCCCGGGHHHHHHHHHHHHHHTTSCSEEEEEEEEC-CCHHHHHHHHHTTCBCCTTTTSGGGSCCTTBTTCCSBCBBCEEE
T ss_pred eecCccHHHHHHHHHHHHHHHcCCCCEEEEEeecc-cchHHHHHHHHhhhhcccccCCcccccCcccCCCCCcccccceE
Confidence 99999999999999999999999999999999998 566666678888888865 5668889999999999999999999
Q ss_pred EEEecchhHHHhcCCceEEEEEEEEEcCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCcCEEEEccCCCccCCHHHHH
Q 012221 293 VLVMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAGVSPEEVNYINAHATSTLAGDLAEIN 372 (468)
Q Consensus 293 avvL~~~~~A~~~g~~i~a~i~g~~~~~d~~~~~~~~~~~~~~~~~i~~al~~Agl~~~dId~v~~h~~gt~~~D~~E~~ 372 (468)
+|||+++++|+++|++||++|+|++.++|+++++.| ++.++.++|+++|+ |++ +||||||+|||||+.+|++|..
T Consensus 256 avvL~~~~~A~~~g~~i~a~I~g~~~~~dg~~~~~P--~~~~~~~ai~~Al~--gl~-~dId~ve~HgtgT~~~D~~E~~ 330 (428)
T 3mqd_A 256 VLVLEDLETALARGAKIYGEIVGYGATSDGYDMVAP--SGEGAIRCMKMALS--TVT-SKIDYINPHATSTPAGDAPEIE 330 (428)
T ss_dssp EEEEEEHHHHHHTTCCCCEEEEEEEEEECCSCSSSC--CSHHHHHHHHHHHT--TCC-SCCCEEECCCCSCHHHHHHHHH
T ss_pred EEEEccHHHHHhCCCcEEEEEEEEEEcCCCCCCCCC--CHHHHHHHHHHHHh--CCc-cccCEEEEeCCCCCCcCHHHHH
Confidence 999999999999999999999999999999988877 67888999999999 999 9999999999999999999999
Q ss_pred HHHHHhcc-CCCceeeecccccCccccchhHHHHHHHHHHHhcCCcCCCCCCCCCCCCCC-cccccccccccCccEEEEE
Q 012221 373 AIKKVFKN-TTGIKINATKSMIGHCLGAAGGLEAIATVKAITTGWLHPSINQFNPEPSVE-FDTVANKKQQHEVNVAISN 450 (468)
Q Consensus 373 al~~~f~~-~~~~~v~s~k~~~Gh~~~AsG~~~l~~~~~~l~~~~~pp~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~ 450 (468)
+|.++|+. ...++|++.|+++||++||||++++++++++|++++|||++|+++|+|.++ +++++...+..+.+++++|
T Consensus 331 al~~~~~~~~~~~~v~s~K~~~GH~~gAsG~~~~i~~~~~l~~~~ipp~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 410 (428)
T 3mqd_A 331 AIRQIFGAGDVCPPIAATKSLTGHSLGATGVQEAIYSLLMMQNNFICESAHIEELDPAFADMPIVRKRIDNVQLNTVLSN 410 (428)
T ss_dssp HHHHHHCSGGGSCCBCCTHHHHCBCGGGHHHHHHHHHHHHHHHTEECCCTTCSSBCGGGTTSCBCSSCEESCCCCEEEEE
T ss_pred HHHHHhcccCCCceeecchhhhcccHHHHHHHHHHHHHHHHHhCCcCCCCCCCCCCcccccCCccCCccccCCCCEEEEe
Confidence 99999984 234799999999999999999999999999999999999999999999996 7777665555678999999
Q ss_pred cccccCeeeEEEEeecC
Q 012221 451 SFGFGGHNSVVAFSAFK 467 (468)
Q Consensus 451 s~g~gG~n~~~vl~~~~ 467 (468)
||||||+|+|+||++|+
T Consensus 411 sfGfGG~Na~~vl~~~~ 427 (428)
T 3mqd_A 411 SFGFGGTNATLVFQRYQ 427 (428)
T ss_dssp EEETTTEEEEEEEECCC
T ss_pred cCcCCcceEEEEEeecC
Confidence 99999999999999985
|
| >2ix4_A 3-oxoacyl-[acyl-carrier-protein] synthase; beta-ketoacyl-(acyl carrier protein) synthase, lipid metabol condensing enzyme; 1.95A {Arabidopsis thaliana} SCOP: c.95.1.1 c.95.1.1 PDB: 1w0i_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-79 Score=624.27 Aligned_cols=405 Identities=40% Similarity=0.679 Sum_probs=374.4
Q ss_pred CcEEEEeeceeccCCCCHHHHHHHHHcCCCCccccCCCC--------------CCCCCCccccccC------CCCCCCCC
Q 012221 56 KRVVITGMGLVSVFGNDVDAYYNKLLDGESGITMIDRFD--------------ASKFPTRFGGQIR------GFSAEGYI 115 (468)
Q Consensus 56 ~~V~ItG~g~~~p~g~~~~~~~~~L~~G~~~i~~~~~~~--------------~~~~~~~~~g~v~------~~d~~~~i 115 (468)
++|||||||+++|+|.++++||++|++|+++++++++|+ ...++.+++++++ +||+++++
T Consensus 1 ~~vaI~G~g~~~p~g~~~~~~w~~l~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~fd~~~~~ 80 (431)
T 2ix4_A 1 RRVVVTGLGMVTPLGRGVETTWRRLIDGECGIRGLTLDDLKMKSFDEETKLYTFDQLSSKVAAFVPYGSNPGEFDEALWL 80 (431)
T ss_dssp CCEEEEEEEEEETTEESHHHHHHHHHTTCCCEEECCGGGGCCTTSCHHHHHHHHHTCSCCEEECCCBSSSTTSBCHHHHS
T ss_pred CcEEEEeeeEECCCCCCHHHHHHHHHcCCCeeeeCChhhhhccccccccccccccCcccceeEEeccccccccCChhhcC
Confidence 479999999999999999999999999999999999887 2356778889887 68887777
Q ss_pred CccccccCCHHHHHHHHHHHHHHHHcCC-CCccccccccccceEEEeecCCCccchHHHHHHHHHhCCCCcCCcCcchhh
Q 012221 116 DGKNDRRLDDCLRYCIVAGKKALEDADL-GADISKKIDKERAGVLVGTGMGGLTVFSDGVQALIEKGHRKITPFFIPYAI 194 (468)
Q Consensus 116 ~~~~~~~~d~~~~l~l~a~~~AL~dAgl-~~~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (468)
+++ +|||+++|+++++++||+|||+ .+ ++++..++||++|++.+++..+++++..+...+.+.++|+.+++.+
T Consensus 81 ~~~---~~d~~~~l~l~aa~~AL~dAG~~~~---~~i~~~~~gv~vg~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 154 (431)
T 2ix4_A 81 NSK---AVANFIGYAVCAADEALRDAEWLPT---EEEEKERTGVSIGGGIGSICDIVEAAQLICEKRLRRLSPFFIPKIL 154 (431)
T ss_dssp CST---TCCHHHHHHHHHHHHHHHHTTCCCC---SHHHHHTEEEEEEESSCCHHHHHHHHHHHHTTCGGGCCTTHHHHHC
T ss_pred Chh---hCCHHHHHHHHHHHHHHHHcCCCCc---cccCCCCEEEEEeeccccHHHHHHHHHHHHhcCcccCChhhhhcch
Confidence 776 8999999999999999999998 53 3567789999999999988877777777777777888999999999
Q ss_pred hhhhHHHHhhhhCCCCcceeecccChHHHHHHHHHHHHHHhCCCCEEEEEeeccccchhhhhHhhhccccccC-CCCCCC
Q 012221 195 TNMGSALLAIDLGFMGPNYSISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAIIPIGLGGFVACRALSQR-NDDPQT 273 (468)
Q Consensus 195 ~n~~a~~ia~~lgl~Gp~~~v~~acas~l~Al~~A~~~I~~G~~d~~lvgG~e~~~~p~~~~~~~~~~~l~~~-~~~~~~ 273 (468)
.+.++.+|++.||++||+++|+++|+|++.||++|+++|++|++|++||||+|.++++..+..|..++.++.+ +.+|++
T Consensus 155 ~~~~a~~ia~~lgl~gp~~~v~taCsS~l~Al~~A~~~I~~G~~d~aLvgG~e~~~~~~~~~~~~~~~~ls~~~~~~~~~ 234 (431)
T 2ix4_A 155 VNMASGHVSMKYGFQGPNHAAVTACATGAHSIGDATRMIQFGDADVMVAGGTESSIDALSVAGFSRSRALSTKFNSSPQE 234 (431)
T ss_dssp TTHHHHHHHHHHTCCSCEECBCCGGGHHHHHHHHHHHHHHHTSCSEEEEEEEECCCSHHHHHHHHHTTCBCCTTTTCGGG
T ss_pred hHHHHHHHHHHHCCCCceeCccChhHHHHHHHHHHHHHHHcCCCCEEEEeeeccccCHHHHHHHHhccccCccccCCccc
Confidence 9999999999999999999999999999999999999999999999999999998899888889998888854 456778
Q ss_pred CCCCCCCCCCCeeecceeEEEEecchhHHHhcCCceEEEEEEEEEcCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCc
Q 012221 274 ASRPWDKDRDGFVMGEGAGVLVMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAGVSPEEV 353 (468)
Q Consensus 274 ~~rpfd~~~~G~v~gEGaaavvL~~~~~A~~~g~~i~a~i~g~~~~~d~~~~~~~~~~~~~~~~~i~~al~~Agl~~~dI 353 (468)
.|+|||.+++|+++||||+++||+++++|+++|+++|++|+|++.++|+++++.|.+++.++.++++++|+++|++|+||
T Consensus 235 ~~~pfd~~~~g~~~gdGAaavvL~~~~~A~~~g~~i~a~i~g~~~~~dg~~~~~p~~~~~~~~~ai~~al~~agl~~~dI 314 (431)
T 2ix4_A 235 ASRPFDCDRDGFVIGEGSGVIVLEEYEHAKRRGAKIYAELCGYGMSGDAHHITQPPEDGKGAVLAMTRALRQSGLCPNQI 314 (431)
T ss_dssp SCCTTBTTCCSBCBBCEEEEEEEEEHHHHHHTTCCCCEEEEEEEEEECCSCSSCCCTTCHHHHHHHHHHHHHHTCCGGGC
T ss_pred ccccCCCCCCCceeecceEEEEEccHHHHHhCCCceEEEEeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHHcCCCHHHc
Confidence 99999999999999999999999999999999999999999999999999999888889999999999999999999999
Q ss_pred CEEEEccCCCccCCHHHHHHHHHHhcc---CCCceeeecccccCccccchhHHHHHHHHHHHhcCCcCCCCCCCCCCCCC
Q 012221 354 NYINAHATSTLAGDLAEINAIKKVFKN---TTGIKINATKSMIGHCLGAAGGLEAIATVKAITTGWLHPSINQFNPEPSV 430 (468)
Q Consensus 354 d~v~~h~~gt~~~D~~E~~al~~~f~~---~~~~~v~s~k~~~Gh~~~AsG~~~l~~~~~~l~~~~~pp~~~~~~~~~~~ 430 (468)
||||+|||||+++|.+|..++.++|+. ..+++|+++|+++||+++|||++++++++++|+++.|||++|+++|+|.+
T Consensus 315 d~ve~HgtgT~~~D~~E~~al~~~~~~~~~~~~~~v~s~k~~~GH~~gAsG~~~li~~~l~l~~~~ipp~~~~~~~~p~~ 394 (431)
T 2ix4_A 315 DYVNAHATSTPIGDAVEARAIKTVFSEHATSGTLAFSSTKGATGHLLGAAGAVEAIFSILAIHHGVAPMTLNVKNPDPIF 394 (431)
T ss_dssp CEEECCCCSCHHHHHHHHHHHHHHHTHHHHTSCSEEECTHHHHCBCGGGHHHHHHHHHHHHHHHTEECCCTTCSSBCTTC
T ss_pred CEEEEeCCcCcccCHHHHHHHHHHHcccccCCCceeecchhhhcccHHHHHHHHHHHHHHHHhcCCcCCCCCCCCCCCCC
Confidence 999999999999999999999999975 24689999999999999999999999999999999999999999999999
Q ss_pred Cccccccccccc-CccEEEEEcccccCeeeEEEEeec
Q 012221 431 EFDTVANKKQQH-EVNVAISNSFGFGGHNSVVAFSAF 466 (468)
Q Consensus 431 ~~~~~~~~~~~~-~~~~~l~~s~g~gG~n~~~vl~~~ 466 (468)
++++++.+.+++ +.|++++|||||||+|+|+||++|
T Consensus 395 ~~~~v~~~~~~~~~~~~a~~~sfGfGG~na~~il~~~ 431 (431)
T 2ix4_A 395 DKRFMPLTTSKKMLVRTAMSNSFGFGGTNASLLFASI 431 (431)
T ss_dssp CSSSCCCSSCEECCCSEEEEEEEETTTEEEEEEEECC
T ss_pred CcccCCccccccCCCCEEEEecccCCCeeEEEEEeeC
Confidence 999988777766 789999999999999999999985
|
| >3hhd_A Fatty acid synthase; transferase, multienzyme, megasynthase, fatty acid synthesis, acetylation, cytoplasm, fatty acid biosynthesis, hydrolase; 2.15A {Homo sapiens} PDB: 2jfk_A* 2jfd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-75 Score=640.67 Aligned_cols=394 Identities=24% Similarity=0.361 Sum_probs=352.9
Q ss_pred CCcEEEEeeceeccCCCCHHHHHHHHHcCCCCccccCC-CCCCCC-CCccccccCC---CCCCCC-CCccccccCCHHHH
Q 012221 55 KKRVVITGMGLVSVFGNDVDAYYNKLLDGESGITMIDR-FDASKF-PTRFGGQIRG---FSAEGY-IDGKNDRRLDDCLR 128 (468)
Q Consensus 55 ~~~V~ItG~g~~~p~g~~~~~~~~~L~~G~~~i~~~~~-~~~~~~-~~~~~g~v~~---~d~~~~-i~~~~~~~~d~~~~ 128 (468)
+++|+||||||++|+|.++++||++|.+|+++++++++ |+...+ .....|.+++ ||+.+| |++++++.|||+++
T Consensus 3 ~~~IaIvGmg~r~P~~~~~~~~W~~l~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~FD~~~f~i~~~ea~~mDp~~r 82 (965)
T 3hhd_A 3 GEEVVIAGMSGKLPESENLQEFWDNLIGGVDMVTDDDRRWKAGLYGLPRRSGKLKDLSRFDASFFGVHPKQAHTMDPQLR 82 (965)
T ss_dssp CCCEEEEEEEEEBTTBSSHHHHHHHHHTTCCCEECSSSSSCTTGGGCCSCEECCSCSSCCCTTTTTCCHHHHHTSCHHHH
T ss_pred CCCEEEEeeeEECCCCCCHHHHHHHHHcCCCcccCCCcccccccccCcccccccCChhhcChhhcCCCHHHHhhcCHHHH
Confidence 57899999999999999999999999999999998764 443211 1234455554 999988 99999999999999
Q ss_pred HHHHHHHHHHHHcCCCCccccccccccceEEEeecCCCccchHHHHHHHHHhCCCCcCCcCcchhhhhhhHHHHhhhhCC
Q 012221 129 YCIVAGKKALEDADLGADISKKIDKERAGVLVGTGMGGLTVFSDGVQALIEKGHRKITPFFIPYAITNMGSALLAIDLGF 208 (468)
Q Consensus 129 l~l~a~~~AL~dAgl~~~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~ia~~lgl 208 (468)
|+++++++||+|||+ +++++++.++|||+|++.+.+ ...+......+.++.+++...++++++|++.|||
T Consensus 83 L~leaa~eALedAGi---~~~~i~~~~~Gv~vG~~~~d~-------~~~~~~~~~~~~~~~~~g~~~~~~a~ris~~lgl 152 (965)
T 3hhd_A 83 LLLEVTYEAIVDGGI---NPDSLRGTHTGVWVGVSGSET-------SEALSRDPETLVGYSMVGCQRAMMANRLSFFFDF 152 (965)
T ss_dssp HHHHHHHHHHHHTTC---CGGGGTTSCCEEEEEECCCHH-------HHHHTSCTTTCCTHHHHHHSTTHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHcCC---ChHHcCCceeEEEEeccchhH-------HHHHhcCccccCcccccccccchHHHHHHHHhCC
Confidence 999999999999999 777899999999999875432 2334455677788888888999999999999999
Q ss_pred CCcceeecccChHHHHHHHHHHHHHHhCCCCEEEEEeeccccchhhhhHhhhccccccCCCCCCCCCCCCCCCCCCeeec
Q 012221 209 MGPNYSISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWDKDRDGFVMG 288 (468)
Q Consensus 209 ~Gp~~~v~~acas~l~Al~~A~~~I~~G~~d~~lvgG~e~~~~p~~~~~~~~~~~l~~~~~~~~~~~rpfd~~~~G~v~g 288 (468)
+||+++|+++|+||+.||++|+++|++|+||++||||+|.+++|..+..|...+.|+ |++.|+|||.+++|+++|
T Consensus 153 ~GPs~tvdtACSSsl~Al~~A~~~I~~G~~d~aLagGv~~~~~p~~~~~~~~~~~ls-----~~g~~~~Fd~~adG~~~g 227 (965)
T 3hhd_A 153 RGPSIALDTACSSSLMALQNAYQAIHSGQCPAAIVGGINVLLKPNTSVQFLRLGMLS-----PEGTCKAFDTAGNGYCRS 227 (965)
T ss_dssp CSCEEEEECGGGHHHHHHHHHHHHHHTTSCSEEEEEEEECCCCHHHHHHHHHHTCBC-----TTCCCCTTBTTCCSBCBB
T ss_pred CCCeeeecCchHHHHHHHHHHHHHHHcCCCCEEEEeeeccccCHHHHHHHHhccCcC-----CCCccccchhccCCcccc
Confidence 999999999999999999999999999999999999999999999999999999998 478899999999999999
Q ss_pred ceeEEEEecchhHHHhcCCceEEEEEEEEEcCCCCC-CCCCCCChHHHHHHHHHHHHHcCCCCCCcCEEEEccCCCccCC
Q 012221 289 EGAGVLVMESLEHAMKRGAPIIAEYLGGAVNCDAYH-MTDPRADGLGVSSCIESSLEDAGVSPEEVNYINAHATSTLAGD 367 (468)
Q Consensus 289 EGaaavvL~~~~~A~~~g~~i~a~i~g~~~~~d~~~-~~~~~~~~~~~~~~i~~al~~Agl~~~dId~v~~h~~gt~~~D 367 (468)
||+++||||++++|+ +||++|+|++.++|+.+ .....|++.++.++|+++|++||++|+||||||+|||||+.||
T Consensus 228 EGagavvL~~l~~A~----~i~a~I~g~~~n~dg~~~~~~t~P~~~~q~~~i~~Al~~Agl~p~dIdyvEaHgTgT~~gD 303 (965)
T 3hhd_A 228 EGVVAVLLTKKSLAR----RVYATILNAGTNTDGFKEQGVTFPSGDIQEQLIRSLYQSAGVAPESFEYIEAHGTGTKVGD 303 (965)
T ss_dssp CEEEEEEEEEGGGCS----SCSEEEEEEEEEECCCCTTCTTSCCHHHHHHHHHHHHHHTTCCGGGEEEEECCCCCCTTHH
T ss_pred ceEEEEEEecHHHcC----cccEEEEeeeccCCCCCCCCCcCCCHHHHHHHHHHHHHHhCCCHHHhccccccCCCCCCCC
Confidence 999999999999885 48999999999999976 3445568889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcc--CCCceeeecccccCccccchhHHHHHHHHHHHhcCCcCCCCCCCCCCCCCCc-c----ccccccc
Q 012221 368 LAEINAIKKVFKN--TTGIKINATKSMIGHCLGAAGGLEAIATVKAITTGWLHPSINQFNPEPSVEF-D----TVANKKQ 440 (468)
Q Consensus 368 ~~E~~al~~~f~~--~~~~~v~s~k~~~Gh~~~AsG~~~l~~~~~~l~~~~~pp~~~~~~~~~~~~~-~----~~~~~~~ 440 (468)
++|.++|.++|+. ..+++|+|+|+++||+++|||++++++++++|++++||||+|+++|+|.+++ . .++.+..
T Consensus 304 ~~E~~Al~~~f~~~~~~~~~vgs~Ks~iGH~~~AaG~~~lik~~l~l~~~~ipp~~~~~~~np~i~~~~~~~~~v~~~~~ 383 (965)
T 3hhd_A 304 PQELNGITRALCATRQEPLLIGSTKSNMGHPEPASGLAALAKVLLSLEHGLWAPNLHFHSPNPEIPALLDGRLQVVDQPL 383 (965)
T ss_dssp HHHHHHHHHHHCSSCSSCEEEECTHHHHCBCGGGHHHHHHHHHHHHHHHTEECCCSSCCSBCTTCHHHHHTSEEECCSCE
T ss_pred HHHHHHHHHHhcccCCCceeeeccccccccchhhhhHHHHHHHHHHHhcCCcCCccCCCCCCccCcccccCceeecCCCc
Confidence 9999999999975 3468999999999999999999999999999999999999999999999972 1 2555666
Q ss_pred ccCccEEEEEcccccCeeeEEEEeecC
Q 012221 441 QHEVNVAISNSFGFGGHNSVVAFSAFK 467 (468)
Q Consensus 441 ~~~~~~~l~~s~g~gG~n~~~vl~~~~ 467 (468)
+++.+++++|||||||+|+|+||++++
T Consensus 384 ~~~~~~a~v~sfG~gG~Nah~il~~~~ 410 (965)
T 3hhd_A 384 PVRGGNVGINSFGFGGSNVHIILRPNT 410 (965)
T ss_dssp ECCSCEEEEEEECTTSEEEEEEEEECC
T ss_pred cCCCCeEEEecccCCCceEEEEeccCC
Confidence 777789999999999999999999874
|
| >2hg4_A DEBS, 6-deoxyerythronolide B synthase; ketosynthase, acyltransferase, module 5, transferase; 2.73A {Saccharopolyspora erythraea} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-74 Score=631.72 Aligned_cols=397 Identities=27% Similarity=0.400 Sum_probs=356.6
Q ss_pred CCcEEEEeeceeccCC-CCHHHHHHHHHcCCCCccccC--C-CCCCCCCCccccccCC---CCCCCC-CCccccccCCHH
Q 012221 55 KKRVVITGMGLVSVFG-NDVDAYYNKLLDGESGITMID--R-FDASKFPTRFGGQIRG---FSAEGY-IDGKNDRRLDDC 126 (468)
Q Consensus 55 ~~~V~ItG~g~~~p~g-~~~~~~~~~L~~G~~~i~~~~--~-~~~~~~~~~~~g~v~~---~d~~~~-i~~~~~~~~d~~ 126 (468)
.++|+||||||++|+| .++++||++|.+|++++++++ | |+. ....+++|++++ ||+.+| |++++++.|||+
T Consensus 38 ~~~iaIvG~~~~~Pgg~~~~~~~w~~L~~g~~~i~~~p~~r~~~~-~~~~~~~~~l~~~~~fD~~~f~i~~~ea~~mdp~ 116 (917)
T 2hg4_A 38 GEPIAIVGMACRFPGDVDSPESFWEFVSGGGDAIAEAPADRGWEP-DPDARLGGMLAAAGDFDAGFFGISPREALAMDPQ 116 (917)
T ss_dssp HCCEEEEEEEEEBTTTBCSHHHHHHHHHTTCCCCEECCGGGCCCC-CSSCCEEBCCTTTTEECTGGGTCCHHHHHHSCHH
T ss_pred CCCEEEEeceEECCCCCCCHHHHHHHHHcCCCccccCCcccccCC-CCCcceeeEecCccccChhhcCCCHHHHHhcCHH
Confidence 3679999999999998 789999999999999999875 3 432 334678888864 888877 999999999999
Q ss_pred HHHHHHHHHHHHHHcCCCCccccccccccceEEEeecCCCccchHHHHHHHHHhCCCCcCCcCcchhhhhhhHHHHhhhh
Q 012221 127 LRYCIVAGKKALEDADLGADISKKIDKERAGVLVGTGMGGLTVFSDGVQALIEKGHRKITPFFIPYAITNMGSALLAIDL 206 (468)
Q Consensus 127 ~~l~l~a~~~AL~dAgl~~~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~ia~~l 206 (468)
++|+++++++||+|||+ ++.++++.++|||+|++..++.... ......+.++.+++...+.++++|++.|
T Consensus 117 ~rl~leaa~eALedAGi---~~~~i~~~~~gV~vG~~~~d~~~~~-------~~~~~~~~~~~~~g~~~~~~a~ris~~l 186 (917)
T 2hg4_A 117 QRIMLEISWEALERAGH---DPVSLRGSATGVFTGVGTVDYGPRP-------DEAPDEVLGYVGTGTASSVASGRVAYCL 186 (917)
T ss_dssp HHHHHHHHHHHHHHTTC---CGGGGTTSCEEEEEEECCCCCSCCT-------TSSCGGGGGGHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCC---ChHHcCCcceEEEEEeCCchhhhhh-------hcCccccCcccccccccchHHHHHHHhc
Confidence 99999999999999999 6778899999999999876654321 1234456777778888899999999999
Q ss_pred CCCCcceeecccChHHHHHHHHHHHHHHhCCCCEEEEEeeccccchhhhhHhhhccccccCCCCCCCCCCCCCCCCCCee
Q 012221 207 GFMGPNYSISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWDKDRDGFV 286 (468)
Q Consensus 207 gl~Gp~~~v~~acas~l~Al~~A~~~I~~G~~d~~lvgG~e~~~~p~~~~~~~~~~~l~~~~~~~~~~~rpfd~~~~G~v 286 (468)
|++||+++|+++|+|++.||++|+++|++|+||++||||+|...+|..+..|...+.|+ |++.|+|||.++||++
T Consensus 187 gl~Gps~tv~taCsSsl~Al~~A~~~I~~G~~d~aLvgGv~~~~~p~~~~~~~~~~~ls-----~~g~~~pFd~~adG~~ 261 (917)
T 2hg4_A 187 GLEGPAMTVDTACSSGLTALHLAMESLRRDECGLALAGGVTVMSSPGAFTEFRSQGGLA-----ADGRCKPFSKAADGFG 261 (917)
T ss_dssp TCCSCEEEEECGGGHHHHHHHHHHHHHHTTSCSEEEEEEEECCCSTHHHHHHTTSSCBC-----TTSCCCTTBTTCCCBC
T ss_pred CCCCCeEeecCCcHHHHHHHHHHHHHHHcCCCCEEEEeEeccccChhhhHhhhhccCcC-----CccccCcccccccCCC
Confidence 99999999999999999999999999999999999999999999998888899888888 4688999999999999
Q ss_pred ecceeEEEEecchhHHHhcCCceEEEEEEEEEcCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCcCEEEEccCCCccC
Q 012221 287 MGEGAGVLVMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAGVSPEEVNYINAHATSTLAG 366 (468)
Q Consensus 287 ~gEGaaavvL~~~~~A~~~g~~i~a~i~g~~~~~d~~~~~~~~~~~~~~~~~i~~al~~Agl~~~dId~v~~h~~gt~~~ 366 (468)
+|||+++|||+++++|+++|++||++|+|++.++|+.+...+.|++.++.++|+++|++||++|+||||||+|||||+++
T Consensus 262 ~gEGagavVL~~l~~A~~~g~~i~a~I~G~~~~~dg~~~~~~~P~~~~q~~ai~~Al~~Agl~p~dId~veaHgtgT~~g 341 (917)
T 2hg4_A 262 LAEGAGVLVLQRLSAARREGRPVLAVLRGSAVNQDGASNGLTAPSGPAQQRVIRRALENAGVRAGDVDYVEAHGTGTRLG 341 (917)
T ss_dssp BBCEEEEEEEEEHHHHHHTTCCCCEEEEEEEEEECCSCSSSSCCCHHHHHHHHHHHHHHHTCCGGGCCEEECCCCCCTTH
T ss_pred CcceEEEEEEeeHHHHHhCCCCeEEEEEEEEEecCCCccCCCCCCHHHHHHHHHHHHHHcCCCHHHCCEEeeccCCCccC
Confidence 99999999999999999999999999999999999998877788899999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHhcc----CCCceeeecccccCccccchhHHHHHHHHHHHhcCCcCCCCCCCCCCCCCCccc----cccc
Q 012221 367 DLAEINAIKKVFKN----TTGIKINATKSMIGHCLGAAGGLEAIATVKAITTGWLHPSINQFNPEPSVEFDT----VANK 438 (468)
Q Consensus 367 D~~E~~al~~~f~~----~~~~~v~s~k~~~Gh~~~AsG~~~l~~~~~~l~~~~~pp~~~~~~~~~~~~~~~----~~~~ 438 (468)
|++|.++|.++|+. ..+++++++|+++||+++|+|++++++++++|+++.|||++|+++|+|.++++. ++.+
T Consensus 342 D~~E~~al~~~fg~~~~~~~~~~vgs~K~~iGH~~~AaG~~~lik~vl~L~~~~ipp~~~~~~~~p~i~~~~~~~~v~~~ 421 (917)
T 2hg4_A 342 DPIEVHALLSTYGAERDPDDPLWIGSVKSNIGHTQAAAGVAGVMKAVLALRHGEMPRTLHFDEPSPQIEWDLGAVSVVSQ 421 (917)
T ss_dssp HHHHHHHHHTTTTTSSCTTSCCEEECTHHHHCBCGGGTTHHHHHHHHHHHHHTEECCCTTCCSBCTTSCC---CCEECCS
T ss_pred cHHHHHHHHHHhccccCCCCceeccCcccceecchhhhHHHHHHHHHHHHhcCCcCCCCCCCCCCccCCccccceeecCC
Confidence 99999999999975 346899999999999999999999999999999999999999999999998754 4444
Q ss_pred cccc----CccEEEEEcccccCeeeEEEEeecC
Q 012221 439 KQQH----EVNVAISNSFGFGGHNSVVAFSAFK 467 (468)
Q Consensus 439 ~~~~----~~~~~l~~s~g~gG~n~~~vl~~~~ 467 (468)
.++| .+|++++|||||||+|+|+||++++
T Consensus 422 ~~~w~~~~~~r~a~v~sfG~gG~Nah~vl~~~~ 454 (917)
T 2hg4_A 422 ARSWPAGERPRRAGVSSFGISGTNAHVIVEEAP 454 (917)
T ss_dssp CEECCCCSSCCEEEEEEECTTSEEEEEEEEECC
T ss_pred cccCCCCCCCCEEEEeeecCCCceEEEEeccCC
Confidence 4444 4689999999999999999999875
|
| >2qo3_A Eryaii erythromycin polyketide synthase modules 3; ketosynthase, acyltransferase, phosphopantetheine, transfera; 2.59A {Saccharopolyspora erythraea} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.4e-74 Score=626.51 Aligned_cols=397 Identities=24% Similarity=0.369 Sum_probs=355.5
Q ss_pred CCcEEEEeeceeccCC-CCHHHHHHHHHcCCCCccccC--C-CCCC-----------CCCCccccccCC---CCCCCC-C
Q 012221 55 KKRVVITGMGLVSVFG-NDVDAYYNKLLDGESGITMID--R-FDAS-----------KFPTRFGGQIRG---FSAEGY-I 115 (468)
Q Consensus 55 ~~~V~ItG~g~~~p~g-~~~~~~~~~L~~G~~~i~~~~--~-~~~~-----------~~~~~~~g~v~~---~d~~~~-i 115 (468)
.++|+||||||++|+| .++++||++|.+|++.+++++ + |+.. ..+.+++|++++ ||+.+| |
T Consensus 5 ~~~iaIvG~~~~~P~g~~~~~~~w~~L~~g~~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~FD~~~f~i 84 (915)
T 2qo3_A 5 SDPIAIVSMACRLPGGVNTPQRLWELLREGGETLSGFPTDRGWDLARLHHPDPDNPGTSYVDKGGFLDDAAGFDAEFFGV 84 (915)
T ss_dssp CCCEEEEEEEEECSTTCCSHHHHHHHHHTTCCCCEECCSSSCCCHHHHBCSCTTSTTCBSCCEEBCCSCSSEECHHHHTC
T ss_pred CCCEEEEeeEEECCCCCCCHHHHHHHHHcCCCcccCCCccccCChhhccCcccccCCCcccceeEEeCCccccCHhhcCC
Confidence 4679999999999999 899999999999999998875 3 5422 124567888865 888887 9
Q ss_pred CccccccCCHHHHHHHHHHHHHHHHcCCCCccccccccccceEEEeecCCCccchHHHHHHHHHhCCCCcCCcCcchhhh
Q 012221 116 DGKNDRRLDDCLRYCIVAGKKALEDADLGADISKKIDKERAGVLVGTGMGGLTVFSDGVQALIEKGHRKITPFFIPYAIT 195 (468)
Q Consensus 116 ~~~~~~~~d~~~~l~l~a~~~AL~dAgl~~~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (468)
++++++.|||+++|+++++++||+|||+ ++++++..++|||+|++.+++.... .....++++.+++...
T Consensus 85 ~~~ea~~mdp~~rL~leaa~eALedAGi---~~~~i~~~~~gV~vG~~~~~~~~~~--------~~~~~~~~~~~~g~~~ 153 (915)
T 2qo3_A 85 SPREAAAMDPQQRLLLETSWELVENAGI---DPHSLRGTATGVFLGVAKFGYGEDT--------AAAEDVEGYSVTGVAP 153 (915)
T ss_dssp CHHHHHTSCHHHHHHHHHHHHHHHHTTC---CGGGGTTBCCEEEEECCCCCTTTTC--------C---CTTCHHHHTTCH
T ss_pred CHHHHHhCCHHHHHHHHHHHHHHHHcCC---ChHHcCCcceEEEEEecCchHHhhh--------cccccccccccccccc
Confidence 9999999999999999999999999999 6778899999999999877654322 1133567777888888
Q ss_pred hhhHHHHhhhhCCCCcceeecccChHHHHHHHHHHHHHHhCCCCEEEEEeeccccchhhhhHhhhccccccCCCCCCCCC
Q 012221 196 NMGSALLAIDLGFMGPNYSISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTAS 275 (468)
Q Consensus 196 n~~a~~ia~~lgl~Gp~~~v~~acas~l~Al~~A~~~I~~G~~d~~lvgG~e~~~~p~~~~~~~~~~~l~~~~~~~~~~~ 275 (468)
+.++++|++.||++||+++|+++|+|++.||++|+++|++|+||++||||+|...+|..+..|..++.++. ++.|
T Consensus 154 ~~~a~ris~~lgl~Gps~tv~taCsSsl~Al~~A~~~I~~G~~d~aLvgGve~~~~p~~~~~~~~~~~ls~-----~g~~ 228 (915)
T 2qo3_A 154 AVASGRISYTMGLEGPSISVDTACSSSLVALHLAVESLRKGESSMAVVGGAAVMATPGVFVDFSRQRALAA-----DGRS 228 (915)
T ss_dssp HHHHHHHHHHHTBCSCEEEEECGGGHHHHHHHHHHHHHHTTSCSSEEEEEEECCSSTHHHHHHHTTTCBCS-----SCCC
T ss_pred cHHHHHHHHHhCCCCCEEEECCCCHHHHHHHHHHHHHHHcCCCCEEEEeEehhhcCHHHHHHHhhhcccCC-----CCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999998884 6889
Q ss_pred CCCCCCCCCeeecceeEEEEecchhHHHhcCCceEEEEEEEEEcCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCcCE
Q 012221 276 RPWDKDRDGFVMGEGAGVLVMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAGVSPEEVNY 355 (468)
Q Consensus 276 rpfd~~~~G~v~gEGaaavvL~~~~~A~~~g~~i~a~i~g~~~~~d~~~~~~~~~~~~~~~~~i~~al~~Agl~~~dId~ 355 (468)
+|||.+++|+++|||++++||+++++|+++|++||++|+|++.++|+.+...+.|++.++.++|+++|++||++|+||||
T Consensus 229 ~~Fd~~adG~v~gEGagavVL~~~~~A~~~g~~i~a~I~G~~~~~dg~~~~~~~p~~~~~~~~i~~Al~~Agl~p~dId~ 308 (915)
T 2qo3_A 229 KAFGAGADGFGFSEGVTLVLLERLSEARRNGHEVLAVVRGSALNQDGASNGLSAPSGPAQRRVIRQALESCGLEPGDVDA 308 (915)
T ss_dssp CTTBTTCCCBCBBCEEEEEEEEEHHHHHHTTCCCCEEEEEEEEEECCSCSSTTCCCHHHHHHHHHHHHHHTTCCGGGCCE
T ss_pred ccccCCCCceeecCceEEEEEeEhHHhhhCCCCeEEEEEEEEEecCCCccCCCCCCHHHHHHHHHHHHHHcCCCHHHCcE
Confidence 99999999999999999999999999999999999999999999999988878889999999999999999999999999
Q ss_pred EEEccCCCccCCHHHHHHHHHHhcc----CCCceeeecccccCccccchhHHHHHHHHHHHhcCCcCCCCCCCCCCCCCC
Q 012221 356 INAHATSTLAGDLAEINAIKKVFKN----TTGIKINATKSMIGHCLGAAGGLEAIATVKAITTGWLHPSINQFNPEPSVE 431 (468)
Q Consensus 356 v~~h~~gt~~~D~~E~~al~~~f~~----~~~~~v~s~k~~~Gh~~~AsG~~~l~~~~~~l~~~~~pp~~~~~~~~~~~~ 431 (468)
||+|||||+++|++|..+|.++|+. ..+++++++|+++||+++|+|++++++++++|+++.|||++|+++|+|.|+
T Consensus 309 ve~HgtgT~~gD~~E~~al~~~f~~~~~~~~~~~vgs~K~~iGH~~~AaG~~~lik~~l~L~~~~ipp~~~~~~~~p~~~ 388 (915)
T 2qo3_A 309 VEAHGTGTALGDPIEANALLDTYGRDRDADRPLWLGSVKSNIGHTQAAAGVTGLLKVVLALRNGELPATLHVEEPTPHVD 388 (915)
T ss_dssp EECCCCCCTTTHHHHHHHHHHHTSSSCCTTSCEEEECTHHHHCBCGGGHHHHHHHHHHHHHHHTEECCCSSCSSBCTTSC
T ss_pred EEecCCCCccCCHHHHHHHHHHhccccCCCCcccccCcccceeCCccccchHHHHHHHHHHhcCCCCCCCCCCCCCcccc
Confidence 9999999999999999999999985 246899999999999999999999999999999999999999999999998
Q ss_pred ccc----ccccccc----cCccEEEEEcccccCeeeEEEEeecC
Q 012221 432 FDT----VANKKQQ----HEVNVAISNSFGFGGHNSVVAFSAFK 467 (468)
Q Consensus 432 ~~~----~~~~~~~----~~~~~~l~~s~g~gG~n~~~vl~~~~ 467 (468)
++. ++.+.++ ..+|++++|||||||+|+|+||++++
T Consensus 389 ~~~~~~~~~~~~~~w~~~~~~r~a~v~sfG~gG~Nah~vl~~~~ 432 (915)
T 2qo3_A 389 WSSGGVALLAGNQPWRRGERTRRAAVSAFGISGTNAHVIVEEAP 432 (915)
T ss_dssp CSSSSEEECSSCEECCSSSSCCEEEEEEECTTSEEEEEEEEECC
T ss_pred cccCceeeecCCcccccCCCCcEEEEeeecCCCceEEEEEeecc
Confidence 752 2222222 34689999999999999999999875
|
| >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-74 Score=679.63 Aligned_cols=394 Identities=24% Similarity=0.358 Sum_probs=353.0
Q ss_pred CCcEEEEeeceeccCCCCHHHHHHHHHcCCCCccccC-CCCCCCCC-CccccccCC---CCCCCC-CCccccccCCHHHH
Q 012221 55 KKRVVITGMGLVSVFGNDVDAYYNKLLDGESGITMID-RFDASKFP-TRFGGQIRG---FSAEGY-IDGKNDRRLDDCLR 128 (468)
Q Consensus 55 ~~~V~ItG~g~~~p~g~~~~~~~~~L~~G~~~i~~~~-~~~~~~~~-~~~~g~v~~---~d~~~~-i~~~~~~~~d~~~~ 128 (468)
|++|+||||||++|+|.++++||++|.+|++++++.+ +|+...+. .+..|++++ ||+.+| |++++++.|||++|
T Consensus 1 m~~iaI~G~~~~~p~~~~~~~~w~~l~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~fd~~~f~i~~~ea~~~dpq~r 80 (2512)
T 2vz8_A 1 MEEVVIAGMSGKLPESENLEEFWANLIGGVDMVTADDRRWKAGLYGLPRRMGKLKDLSRFDASFFGVHSKQANTMDPQLR 80 (2512)
T ss_dssp CCCEEEEEEEEEBTTBSSHHHHHHHHHTTCCCEEECSSSSCTTGGGCCSEEECCSCSSCCCTTTTTCCHHHHHTSCHHHH
T ss_pred CCCEEEEeeeeeCCCCCCHHHHHHHHHcCCccccCCCcccccccccCcccceecCCcccCCHhhcCCCHHHHHhcCHHHH
Confidence 3689999999999999999999999999999999875 45543221 345666655 999988 99999999999999
Q ss_pred HHHHHHHHHHHHcCCCCccccccccccceEEEeecCCCccchHHHHHHHHHhCCCCcCCcCcchhhhhhhHHHHhhhhCC
Q 012221 129 YCIVAGKKALEDADLGADISKKIDKERAGVLVGTGMGGLTVFSDGVQALIEKGHRKITPFFIPYAITNMGSALLAIDLGF 208 (468)
Q Consensus 129 l~l~a~~~AL~dAgl~~~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~ia~~lgl 208 (468)
|+++++++||+|||+ ++..+++.++|||+|++.+++. ..+......+.++.+++...++++++|++.|||
T Consensus 81 l~l~~~~eAle~Ag~---~~~~~~~~~~gv~~G~~~~~~~-------~~~~~~~~~~~~~~~~g~~~~~~a~ris~~~~l 150 (2512)
T 2vz8_A 81 MLLEVTYEAIVDGGI---NPASLRGTSTGVWVGVSSSDAS-------EALSRDPETLVGYSMIGCQRAMMANRLSFFFDF 150 (2512)
T ss_dssp HHHHHHHHHHGGGTC---CGGGGTTCSCEEEEEECCCHHH-------HHTTSCTTTSCGGGGGGTSTTHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHCCC---ChhhcCCCCeEEEEEeccHHHH-------HHHhcCccccCcceecccchhHHHHHHHHHhCC
Confidence 999999999999999 6677888999999999765322 222344567788899999999999999999999
Q ss_pred CCcceeecccChHHHHHHHHHHHHHHhCCCCEEEEEeeccccchhhhhHhhhccccccCCCCCCCCCCCCCCCCCCeeec
Q 012221 209 MGPNYSISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWDKDRDGFVMG 288 (468)
Q Consensus 209 ~Gp~~~v~~acas~l~Al~~A~~~I~~G~~d~~lvgG~e~~~~p~~~~~~~~~~~l~~~~~~~~~~~rpfd~~~~G~v~g 288 (468)
+||+++|+++|+||++||++|+++|++|+||++||||++..++|..+..|.++++|+ |++.|||||.++|||++|
T Consensus 151 ~Gps~tv~tACsSsl~Al~~A~~~l~~g~~d~al~gG~~~~~~p~~~~~~~~~~~ls-----~~g~c~~Fd~~adG~~~g 225 (2512)
T 2vz8_A 151 KGPSITIDTACSSSLLALQSAYQAIRGGECSAAVVGGLNVLLKPNSSLQFMKLGMLS-----QDGTCRSFDAEGTGYCRA 225 (2512)
T ss_dssp CSCEEEEECTTSTHHHHHHHHHHHHHTSSCSEEEEEEEECCCCHHHHHHHHHTTCBC-----TTCSCCSSSTTCCCBCBB
T ss_pred CCCceeeccHhHHHHHHHHHHHHHHHcCCCCeeEEeEeccccCHHHHHHHccCCCCC-----CCCCCCCCCCCCCCccee
Confidence 999999999999999999999999999999999999999999999999999999999 478999999999999999
Q ss_pred ceeEEEEecchhHHHhcCCceEEEEEEEEEcCCCCC-CCCCCCChHHHHHHHHHHHHHcCCCCCCcCEEEEccCCCccCC
Q 012221 289 EGAGVLVMESLEHAMKRGAPIIAEYLGGAVNCDAYH-MTDPRADGLGVSSCIESSLEDAGVSPEEVNYINAHATSTLAGD 367 (468)
Q Consensus 289 EGaaavvL~~~~~A~~~g~~i~a~i~g~~~~~d~~~-~~~~~~~~~~~~~~i~~al~~Agl~~~dId~v~~h~~gt~~~D 367 (468)
||+++||||++++|+ +|||+|+|+++++||++ .....|++.++.++|++||++||++|+||+|||+|||||+.||
T Consensus 226 EG~~~~vLk~l~~A~----~i~a~i~g~~~n~dg~~~~~~t~P~~~~q~~~i~~al~~ag~~p~~i~yveaHGTgT~~gD 301 (2512)
T 2vz8_A 226 EAVVAVLLTKKSLAR----RVYATILNAGTNTDGSKEQGVTFPSGDVQEQLIRSLYAPAGPDPESLEYIEAHGTGTKVGD 301 (2512)
T ss_dssp CEEEEEEEEEGGGCS----CCSEEEEEEEEEECCCCTTCSSSCCHHHHHHHHHTTSGGGSSCTTSCCEEECCCCCCTTHH
T ss_pred eeEEEEEEEEHHHCC----cccEEEEEEEEcCCCCCCCCCCCCCHHHHHHHHHHHHHHcCCCHHHCCEEEeecCCCCCCC
Confidence 999999999999986 59999999999999974 3344568999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcc--CCCceeeecccccCccccchhHHHHHHHHHHHhcCCcCCCCCCCCCCCCCC-cc----ccccccc
Q 012221 368 LAEINAIKKVFKN--TTGIKINATKSMIGHCLGAAGGLEAIATVKAITTGWLHPSINQFNPEPSVE-FD----TVANKKQ 440 (468)
Q Consensus 368 ~~E~~al~~~f~~--~~~~~v~s~k~~~Gh~~~AsG~~~l~~~~~~l~~~~~pp~~~~~~~~~~~~-~~----~~~~~~~ 440 (468)
++|++||.++|+. ..+++|+|+|+++||+++|||+++++|++++|++|.||||+|+++|+|.++ +. .++.+..
T Consensus 302 ~~E~~al~~~f~~~~~~~~~igS~Ks~iGH~~~AaG~~~~ik~~l~l~~~~ipp~~~~~~~~p~~~~~~~~~~~~~~~~~ 381 (2512)
T 2vz8_A 302 PQELNGIVNALCATRREPLLIGSTKSNMGHPEPASGVAALIKVLLSLEHGVWAPNLHYHTPNPEIPALQDGRLQVVDRPL 381 (2512)
T ss_dssp HHHHHHHHHHHCSCSSSCCEEECHHHHHCBCGGGHHHHHHHHHHHHHTTTBCCCCSSCCSCCTTSSSSSSSSCEECCSCC
T ss_pred HHHHHHHHHHhcccCCCCceeecccccccccccccchhHHHHHHHHHHCCCcCCCCCCCCCCccccccccCceEecCCCc
Confidence 9999999999985 346899999999999999999999999999999999999999999999996 43 2455566
Q ss_pred ccCccEEEEEcccccCeeeEEEEeecC
Q 012221 441 QHEVNVAISNSFGFGGHNSVVAFSAFK 467 (468)
Q Consensus 441 ~~~~~~~l~~s~g~gG~n~~~vl~~~~ 467 (468)
+++.+++++|||||||+|+|+||++++
T Consensus 382 ~~~~~~a~vnsfG~gG~Nah~il~~~~ 408 (2512)
T 2vz8_A 382 PIRGGNVGINSFGFGGSNVHVILQPNS 408 (2512)
T ss_dssp BCCSCCEEEEEEETTTEEEEEEEEECC
T ss_pred cCCCCeEEEeccCCCCceeEEEEccCC
Confidence 677778999999999999999999874
|
| >2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-68 Score=581.87 Aligned_cols=388 Identities=23% Similarity=0.310 Sum_probs=340.1
Q ss_pred CCHHHHHHHHHcCCCCccccCCCCCCCCCCccccccC-CCCCCCC-CCccccccCCHHHHHHHHHHHHHHHHcCCCCccc
Q 012221 71 NDVDAYYNKLLDGESGITMIDRFDASKFPTRFGGQIR-GFSAEGY-IDGKNDRRLDDCLRYCIVAGKKALEDADLGADIS 148 (468)
Q Consensus 71 ~~~~~~~~~L~~G~~~i~~~~~~~~~~~~~~~~g~v~-~~d~~~~-i~~~~~~~~d~~~~l~l~a~~~AL~dAgl~~~~~ 148 (468)
.+.++||++|.+|++.+.+. ...++.+++|+|+ +||+.+| |+++++++|||+++|+++++++||++||+.. +
T Consensus 959 ~~~eefW~~L~~G~~~i~p~----~~~~~~~vaG~Ip~gFD~~~fGIs~~ea~~mDP~qrLaLeAa~EALedAGI~d--P 1032 (1688)
T 2pff_A 959 PETGEYSVKLLKGATLYIPK----ALRFDRLVAGQIPTGWNAKTYGISDDIISQVDPITLFVLVSVVEAFIASGITD--P 1032 (1688)
T ss_dssp CCCCSSSCCCCCCTTCCCCC----CCCEECCSSCSCCCCCCCCCSSCCTTTBTTBCSSTTHHHHHHHHHHTTTTCSS--G
T ss_pred CCHHHHHHHHHcCCCEEecC----CCCCCceEEEEECCCCChhhCCCCHHHHhccCHHHHHHHHHHHHHHHHcCCCC--h
Confidence 35789999999999999983 3456778899997 6999998 9999999999999999999999999999931 3
Q ss_pred cc----cccccceEEEeecCCCccchHHHHHHHHHhCCCCcCCcCcchhhhhhhHHHHhh-hhCCCCcceeecccChHHH
Q 012221 149 KK----IDKERAGVLVGTGMGGLTVFSDGVQALIEKGHRKITPFFIPYAITNMGSALLAI-DLGFMGPNYSISTACATSN 223 (468)
Q Consensus 149 ~~----~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~ia~-~lgl~Gp~~~v~~acas~l 223 (468)
.+ ++..++||++|++++++......+...+. ...+.++.++..+.|..++++++ .||++||+++|+++|+||+
T Consensus 1033 ~ei~~~i~~s~vGV~vGSg~Gg~~~l~~~~~~~~~--~~~v~~~~l~~~~~nt~Aa~Vs~~~LGl~GPs~TVdtACASSL 1110 (1688)
T 2pff_A 1033 YEMYKYVHVSEVGNCSGSGMGGVSALRGMFKDRFK--DEPVQNDILQESFINTMSAWVNMLLISSSGPIKTPVGACATSV 1110 (1688)
T ss_dssp GGGGGGTCCSCSCCCCCCCSCCCSSHHHHHHSSSS--CCCCCSTTHHHHCTHHHHHHHHHSSCCCCCCCCCCCCTTTTTH
T ss_pred HHhccccCCceEEEEecccCCCHHHHHHHHHHHHh--cCCCCcchhccccHHHHHHHHHHHHcCCcCCeEEecCCCchHH
Confidence 34 67889999999999998876665543221 23477888888899999999999 7999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCEEEEEeeccccchhhhhHhhhccccccC------CCCCCCCCCCCCCCCCCeeecceeEEEEec
Q 012221 224 YCFYAAANHIRRGEADLMLAGGTEAAIIPIGLGGFVACRALSQR------NDDPQTASRPWDKDRDGFVMGEGAGVLVME 297 (468)
Q Consensus 224 ~Al~~A~~~I~~G~~d~~lvgG~e~~~~p~~~~~~~~~~~l~~~------~~~~~~~~rpfd~~~~G~v~gEGaaavvL~ 297 (468)
.||+.|+++|++|+||++||||+|. +++..+..|..++.++.. ..+|++.|||||.+++||++||||+++||+
T Consensus 1111 ~AL~lA~~aIrsGeaDvaLVGGvE~-msp~~~~~Fa~mgaLS~~~~e~a~G~~Pd~~cRPFd~~rdGfv~GEGAGavVLe 1189 (1688)
T 2pff_A 1111 ESVDIGVETILSGKARICIVGGYDD-FQEEGSFEFGNMKATSNTLEEFEHGRTPAEMSRPATTTRNGFMEAQGAGIQIIM 1189 (1688)
T ss_dssp HHHHHHHHHHHTTTCSCBCCCCCCC-CCTTTTTTTTTTSCSCCTTTTTTSSCCSSSSCCSSSSSCCCCCCCSCCEEEEEE
T ss_pred HHHHHHHHHHHCCCCCEEEEeeecc-CCHHHHHHHHhccccccChhhhhcCCChhhccCcCccCCCCCccccceEEEEeC
Confidence 9999999999999999999999998 688888889999998853 345889999999999999999999999999
Q ss_pred chhHHHhcCCceEEEEEEEEEcCCCCCCCCCCCC------------------hH--------------------------
Q 012221 298 SLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRAD------------------GL-------------------------- 333 (468)
Q Consensus 298 ~~~~A~~~g~~i~a~i~g~~~~~d~~~~~~~~~~------------------~~-------------------------- 333 (468)
+++.|+++|++||++|+|+++++|+.+.+.|.|. ..
T Consensus 1190 sle~Al~~G~~IyAvI~GsavnsDg~~~SipAPg~GiLt~Ar~~~G~~taPSp~ld~~~R~rql~~~~~~i~~~~~~e~~ 1269 (1688)
T 2pff_A 1190 QADLALKMGVPIYGIVAMAATATDKIGRSVPAPGKGILTTAREHHSSVKYASPNLNMKYRKRQLVTREAQIKDWVENELE 1269 (1688)
T ss_dssp CSHHHHSSSCCCCCEECCCCCCCCCCCSSSCCCCSSSSSSSSSCCCCSSCSSCCSCTTCCHHHHSHHHHHHHHHHHHHHH
T ss_pred cHHHHHHCCCceEEEEEEEEEECCCCccCCCCCCCCccchhhhcccccCCCCcccChHHHHHHHHHHHHHHHHHHHhhHH
Confidence 9999999999999999999999998865433321 00
Q ss_pred -----------------HH-------------------------------HHHHHHHHHHcCCCCCCcCEEEEccCCCcc
Q 012221 334 -----------------GV-------------------------------SSCIESSLEDAGVSPEEVNYINAHATSTLA 365 (468)
Q Consensus 334 -----------------~~-------------------------------~~~i~~al~~Agl~~~dId~v~~h~~gt~~ 365 (468)
.+ .++|++||+++||+|+||||||+|||||+.
T Consensus 1270 ~l~~e~~~~g~~~~~~~aQer~~~i~~~~~r~~~~~~~~~Gn~f~~~d~~~~aIr~ALa~AGLtpdDIdyVEaHGTGT~l 1349 (1688)
T 2pff_A 1270 ALKLEAEEIPSEDQNEFLLERTREIHNEAESQLRAAQQQWGNDFYKRDPRIAPLRGALATYGLTIDDLGVASFHGTSTKA 1349 (1688)
T ss_dssp HHHHHSSSSCSSHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTSSSSSCTTCCSHHHHTTSSCSSTTCCCCCCCCCCSCSS
T ss_pred HHHHHHhhhcccchhhHHHHHHHHHHHHHHHHHHHHHhccCCceecchHHHHHHHHHHHHcCCCHHHeeEEEEeCCCCcc
Confidence 12 367999999999999999999999999999
Q ss_pred CCHHHHHHHHHHhcc-----CCCceeeecccccCccccchhHHHHHHHHHHHhcCCcCCCCCCCCCCCCCC-cccc--cc
Q 012221 366 GDLAEINAIKKVFKN-----TTGIKINATKSMIGHCLGAAGGLEAIATVKAITTGWLHPSINQFNPEPSVE-FDTV--AN 437 (468)
Q Consensus 366 ~D~~E~~al~~~f~~-----~~~~~v~s~k~~~Gh~~~AsG~~~l~~~~~~l~~~~~pp~~~~~~~~~~~~-~~~~--~~ 437 (468)
||++|.++|.++|+. ..++++++.|+++||+.||||++++++++++|++|.||||+|+++|+|.++ ++++ +.
T Consensus 1350 gD~iE~~AL~~af~~~gr~~g~pl~V~S~KsliGHp~GAAGa~~Lik~llaL~~G~IPptln~d~pdp~l~~~d~v~~p~ 1429 (1688)
T 2pff_A 1350 NDKNESATINEMMKHLGRSEGNPVIGVFQKFLTGHPKGAAGAWMMNGALQILNSGIIPGNRNADNVDKILEQFEYVLYPS 1429 (1688)
T ss_dssp SSTTTTTTTGGGTGGGCCCTTCCCCCCCCTTTTCCCSSTHHHHHHHHHHHHSTTCCCCCCSCCSCCCTTCCSSCCCCSCT
T ss_pred ccHHHHHHHHHHHhhhCcCCCCeEEEEeChhhhcchHHHhhHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCcCCceeecC
Confidence 999999999999975 235899999999999999999999999999999999999999999999994 6654 55
Q ss_pred ccccc-CccEEEEEcccccCeeeEEEEeecC
Q 012221 438 KKQQH-EVNVAISNSFGFGGHNSVVAFSAFK 467 (468)
Q Consensus 438 ~~~~~-~~~~~l~~s~g~gG~n~~~vl~~~~ 467 (468)
+.+++ .++++++|||||||+|+|+|+++++
T Consensus 1430 ~~~~~~~~r~AlVnSFGFGGtNAhvILe~p~ 1460 (1688)
T 2pff_A 1430 KTLKTDGVRAVSITSFGFGQKGGQAIVVHPD 1460 (1688)
T ss_dssp TCCSSSSSSCCCCCCCCSTTCCCCCCEECSS
T ss_pred ccccCCCCcEEEEeeECCCCeeEEEEEeCCC
Confidence 55444 6899999999999999999999864
|
| >2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_A* 3hmj_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-65 Score=577.79 Aligned_cols=395 Identities=23% Similarity=0.309 Sum_probs=345.3
Q ss_pred CcEEEEeeceeccCCCCHHHHHHHHHcCCCCccccCCCCCCCCCCccccccC-CCCCCCC-CCccccccCCHHHHHHHHH
Q 012221 56 KRVVITGMGLVSVFGNDVDAYYNKLLDGESGITMIDRFDASKFPTRFGGQIR-GFSAEGY-IDGKNDRRLDDCLRYCIVA 133 (468)
Q Consensus 56 ~~V~ItG~g~~~p~g~~~~~~~~~L~~G~~~i~~~~~~~~~~~~~~~~g~v~-~~d~~~~-i~~~~~~~~d~~~~l~l~a 133 (468)
.+|+|+++ .+.++||++|.+|++++.+.. ..++.+++|+|+ +||+.+| |+++++++|||+++|++++
T Consensus 1150 ~~~~I~~~-------~~~~~~w~~L~~G~~~i~p~~----~~~~~~~aG~i~~~FD~~~fgI~~~ea~~mDp~~~l~L~a 1218 (1887)
T 2uv8_A 1150 DKVDIFEI-------PETGEYSVKLLKGATLYIPKA----LRFDRLVAGQIPTGWNAKTYGISDDIISQVDPITLFVLVS 1218 (1887)
T ss_dssp GGEEEEEC-------TTTSCEEEEECTTCEEEEEEE----ECCSCCEEECCCTTCCTTTTTCCHHHHHHSCHHHHHHHHH
T ss_pred CceeEeec-------CchHHHHHHHHcCCceeeccc----CCCCccEEEEECCCCChhhcCCCHHHHHhcCHHHHHHHHH
Confidence 56878752 357899999999999998853 356778999997 7999998 9999999999999999999
Q ss_pred HHHHHHHcCCCCccccc----cccccceEEEeecCCCccchHHHHHHHHHhCCCCcCCcCcchhhhhhhHHHHhh-hhCC
Q 012221 134 GKKALEDADLGADISKK----IDKERAGVLVGTGMGGLTVFSDGVQALIEKGHRKITPFFIPYAITNMGSALLAI-DLGF 208 (468)
Q Consensus 134 ~~~AL~dAgl~~~~~~~----~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~ia~-~lgl 208 (468)
+++||++||+. ++.+ ++..++||++|++++++......+...+. ...+.++.++.++.|.+++++++ .||+
T Consensus 1219 a~eAL~dAGi~--dp~e~~~~i~~s~vGv~vGs~~gg~~~~~~~~~~~~~--~~~v~~~~~~~~~~n~~aa~is~~~lgl 1294 (1887)
T 2uv8_A 1219 VVEAFIASGIT--DPYEMYKYVHVSEVGNCSGSGMGGVSALRGMFKDRFK--DEPVQNDILQESFINTMSAWVNMLLISS 1294 (1887)
T ss_dssp HHHHHHHTTCS--SGGGHHHHSCGGGEEECCEESSCCHHHHHHHHTTTTT--TCCCCTTHHHHHSTTHHHHHHHHHTTCC
T ss_pred HHHHHHHcCCC--ChhhhhcccCCceeEEEeccCCccHHHHHHHHHHHHh--cCCCCcchhhcchhhHHHHHHHHHHcCC
Confidence 99999999993 1334 77889999999999987766555443322 23467778888889999999999 5999
Q ss_pred CCcceeecccChHHHHHHHHHHHHHHhCCCCEEEEEeeccccchhhhhHhhhccccccC------CCCCCCCCCCCCCCC
Q 012221 209 MGPNYSISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAIIPIGLGGFVACRALSQR------NDDPQTASRPWDKDR 282 (468)
Q Consensus 209 ~Gp~~~v~~acas~l~Al~~A~~~I~~G~~d~~lvgG~e~~~~p~~~~~~~~~~~l~~~------~~~~~~~~rpfd~~~ 282 (468)
+||+++|+++|+||+.||+.|++.|++|+||++||||+|. +++..+..|..++.++.. +.+|++.|||||..+
T Consensus 1295 ~GP~~tv~tACASsl~Al~~A~~~I~sG~advaLvGGvd~-~~~~~~~~f~~m~als~~~~e~~~g~~p~~~~RPfd~~r 1373 (1887)
T 2uv8_A 1295 SGPIKTPVGACATSVESVDIGVETILSGKARICIVGGYDD-FQEEGSFEFGNMKATSNTLEEFEHGRTPAEMSRPATTTR 1373 (1887)
T ss_dssp CSCCCCCCCGGGHHHHHHHHHHHHHHTTSCSEEEEEEEEC-CCHHHHHHHHHTTCBCCHHHHHHTTCCGGGSCCTTBTTC
T ss_pred ccceEEeecccccHHHHHHHHHHHHHcCCCCEEEEeeecc-CChHHHHHHHHhhhhccchhhhcccCCCccCcCCCcccC
Confidence 9999999999999999999999999999999999999998 789999999999999842 456889999999999
Q ss_pred CCeeecceeEEEEecchhHHHhcCCceEEEEEEEEEcCCCCCCCCCCCC------------------h------------
Q 012221 283 DGFVMGEGAGVLVMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRAD------------------G------------ 332 (468)
Q Consensus 283 ~G~v~gEGaaavvL~~~~~A~~~g~~i~a~i~g~~~~~d~~~~~~~~~~------------------~------------ 332 (468)
+||++|||++++||++++.|+++|++||++|+|+++++|+.+.+.|.|. .
T Consensus 1374 ~Gfv~gEGag~vVL~~~~~A~~~G~~I~avI~g~a~~~Dg~~~s~paPg~G~lt~ar~~~G~gt~ps~~ld~~~r~~ql~ 1453 (1887)
T 2uv8_A 1374 NGFMEAQGAGIQIIMQADLALKMGVPIYGIVAMAATATDKIGRSVPAPGKGILTTAREHHSSVKYASPNLNMKYRKRQLV 1453 (1887)
T ss_dssp CSBCBBCEEEEEEEEEHHHHHHHTCCCCEEEEEEEEECCCSCSCTTCCCSGGGGGGCCCCSCCSSCCGGGCHHHHHHHHH
T ss_pred CCcccccceEEEEEccHHHHHHCCCceEEEEeeeEEecCCccccCCCCCccccccccccccccCCCCcccchHHHHHHHH
Confidence 9999999999999999999999999999999999999999876544432 1
Q ss_pred -------------------------------HHH-------------------------------HHHHHHHHHHcCCCC
Q 012221 333 -------------------------------LGV-------------------------------SSCIESSLEDAGVSP 350 (468)
Q Consensus 333 -------------------------------~~~-------------------------------~~~i~~al~~Agl~~ 350 (468)
..+ ..+|++||+++||+|
T Consensus 1454 ~~~~~i~~~~~~~~~~l~~~~~~~g~~~~~~~~Qe~~~~i~~~~~~~~~~~~~~~~~~~~~~d~~~~air~ALa~AGl~p 1533 (1887)
T 2uv8_A 1454 TREAQIKDWVENELEALKLEAEEIPSEDQNEFLLERTREIHNEAESQLRAAQQQWGNDFYKRDPRIAPLRGALATYGLTI 1533 (1887)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTTTCSSSCHHHHHHHTTTCCG
T ss_pred HHHHHHHHHhhhhhhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHHHHHhhccchhhchHHHHHHHHHHHHcCCCH
Confidence 012 368999999999999
Q ss_pred CCcCEEEEccCCCccCCHHHHHHHHHHhcc-----CCCceeeecccccCccccchhHHHHHHHHHHHhcCCcCCCCCCCC
Q 012221 351 EEVNYINAHATSTLAGDLAEINAIKKVFKN-----TTGIKINATKSMIGHCLGAAGGLEAIATVKAITTGWLHPSINQFN 425 (468)
Q Consensus 351 ~dId~v~~h~~gt~~~D~~E~~al~~~f~~-----~~~~~v~s~k~~~Gh~~~AsG~~~l~~~~~~l~~~~~pp~~~~~~ 425 (468)
+||||||+|||||+.||++|.++|.++|+. ..++++++.|+++||+.||||++++++++++|++|.||||+|+++
T Consensus 1534 ~DId~veaHGTgT~~gD~~E~~Al~~~f~~~gr~~~~pl~v~s~KsliGH~~gAAGa~~li~~ll~L~~g~iPpt~n~d~ 1613 (1887)
T 2uv8_A 1534 DDLGVASFHGTSTKANDKNESATINEMMKHLGRSEGNPVIGVFQKFLTGHPKGAAGAWMMNGALQILNSGIIPGNRNADN 1613 (1887)
T ss_dssp GGEEEEECCCCSCHHHHHHHHHHHHHHHHHHTCCTTCCEEEECTHHHHCBCGGGHHHHHHHHHHHHHTTCEECCCTTCSS
T ss_pred HHceEEEecCCCCcccCHHHHHHHHHHHhhhccCCCCcEEEEecccceechHHHHhHHHHHHHHHHHHhCCcCCcCCCCC
Confidence 999999999999999999999999999964 235899999999999999999999999999999999999999999
Q ss_pred CCCCCC-cccc--ccccccc-CccEEEEEcccccCeeeEEEEeec
Q 012221 426 PEPSVE-FDTV--ANKKQQH-EVNVAISNSFGFGGHNSVVAFSAF 466 (468)
Q Consensus 426 ~~~~~~-~~~~--~~~~~~~-~~~~~l~~s~g~gG~n~~~vl~~~ 466 (468)
|+|.++ ++++ +.+..++ .++++++|||||||+|+|+|++++
T Consensus 1614 ~dp~l~~~~~l~~~~~~~~~~~~r~a~v~SFGFGG~NahvIle~p 1658 (1887)
T 2uv8_A 1614 VDKILEQFEYVLYPSKTLKTDGVRAVSITSFGFGQKGGQAIVVHP 1658 (1887)
T ss_dssp BCGGGGGCTTEECCSSCEECSCCCEEEEEEEETTTEEEEEEEECT
T ss_pred CCCccccccccccccccccCCCCCEEEEccCCCCCccEEEEEecC
Confidence 999994 6654 5554444 689999999999999999999976
|
| >2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; 3.1A {Thermomyces lanuginosus} PDB: 2uvb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.7e-66 Score=578.50 Aligned_cols=395 Identities=22% Similarity=0.300 Sum_probs=345.9
Q ss_pred CcEEEEeeceeccCCCCHHHHHHHHHcCCCCccccCCCCCCCCCCccccccC-CCCCCCC-CCccccccCCHHHHHHHHH
Q 012221 56 KRVVITGMGLVSVFGNDVDAYYNKLLDGESGITMIDRFDASKFPTRFGGQIR-GFSAEGY-IDGKNDRRLDDCLRYCIVA 133 (468)
Q Consensus 56 ~~V~ItG~g~~~p~g~~~~~~~~~L~~G~~~i~~~~~~~~~~~~~~~~g~v~-~~d~~~~-i~~~~~~~~d~~~~l~l~a 133 (468)
.+|.|+. ..+.++||++|.+|++++.+.. ..++.+++|+|+ +||+.+| |+++++++|||+++|++++
T Consensus 1125 ~~~~i~~-------~~~~~~~w~~L~~G~~~i~p~~----~~~~~~~aG~i~~~FD~~~fgI~~~ea~~mDp~~~l~L~a 1193 (1878)
T 2uv9_A 1125 DKVEIFE-------IPETGQYTVRLRKGATLLIPKA----LQFDRLVAGQIPTGWDARRYGVPEDIIQQVDPVTLYVLVS 1193 (1878)
T ss_dssp GGEEEEE-------CTTTSCEEEEECTTCEEEEEEE----ECCSCCEEEECCTTCCHHHHTCCHHHHHHSCHHHHHHHHH
T ss_pred CCeeEee-------CCChHHHHHHHHcCCCeeeecC----CCCcceEEEEeCCCCCHhhcCCCHHHHHhcCHHHHHHHHH
Confidence 5677763 3567899999999999998842 356678999997 7999988 9999999999999999999
Q ss_pred HHHHHHHcCCCCccccc----cccccceEEEeecCCCccchHHHHHHHHHhCCCCcCCcCcchhhhhhhHHHHhh-hhCC
Q 012221 134 GKKALEDADLGADISKK----IDKERAGVLVGTGMGGLTVFSDGVQALIEKGHRKITPFFIPYAITNMGSALLAI-DLGF 208 (468)
Q Consensus 134 ~~~AL~dAgl~~~~~~~----~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~ia~-~lgl 208 (468)
+++||++|||. ++.+ ++..++||++|++++++......+...+. ...+.++.++.++.|.+++++++ .||+
T Consensus 1194 a~eAL~~AGi~--~p~e~~~~i~~s~vGv~vGsg~gg~~~~~~~~~~~~~--~~~v~~~~~~~~~~n~~aa~vs~~~lg~ 1269 (1878)
T 2uv9_A 1194 VAEALLSSGIT--DPYEFYKYVHLSEVGNCIGSGVGGTSALRGMYKDRYL--DKPVQKDILQESFVNTMAAWVNMLLLSS 1269 (1878)
T ss_dssp HHHHHHTTTCS--SGGGHHHHSCGGGEEEEEEESSCCHHHHHHHHTTTTT--TCCCCSCTTGGGSHHHHHHHHHHHTCCC
T ss_pred HHHHHHHCCCC--ChhhhhcccCccceEEEEccCCccHHHHHHHHHHHHh--cCCCCchhhhcchHHHHHHHHHHHhcCC
Confidence 99999999993 1344 67899999999999998766555443322 23477888899999999999999 5999
Q ss_pred CCcceeecccChHHHHHHHHHHHHHHhCCCCEEEEEeeccccchhhhhHhhhccccccC------CCCCCCCCCCCCCCC
Q 012221 209 MGPNYSISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAIIPIGLGGFVACRALSQR------NDDPQTASRPWDKDR 282 (468)
Q Consensus 209 ~Gp~~~v~~acas~l~Al~~A~~~I~~G~~d~~lvgG~e~~~~p~~~~~~~~~~~l~~~------~~~~~~~~rpfd~~~ 282 (468)
+||+++++++|+|++.||+.|++.|++|+||++||||+|. +++.....|..++.++.. +.+|++.|||||..+
T Consensus 1270 ~GP~~tv~tACASsl~Al~~A~~~I~sG~advalvGGvd~-~~~~~~~~f~~m~als~~~de~a~g~~p~~~~RPfd~~r 1348 (1878)
T 2uv9_A 1270 TGPIKTPVGACATAVESLDVGYDTIMQGKARVCLVGGFDD-FQEEGSYEFANMGATSNAKEEFARGREPGEMSRPTSTTR 1348 (1878)
T ss_dssp CCCBCCBCCGGGHHHHHHHHHHHHHTTTSCSEEEEEEEEC-CCHHHHHHHHHHTCBCCHHHHHTTTCCTTSSCCSSBTTC
T ss_pred CCCeEEEcCcchHHHHHHHHHHHHHHcCCCCEEEEeeecc-CChHHHHHHHHhhhhccchhhhhcCCCcccCcCCCccCC
Confidence 9999999999999999999999999999999999999998 889999999999999852 456889999999999
Q ss_pred CCeeecceeEEEEecchhHHHhcCCceEEEEEEEEEcCCCCCCCCCCCC-h-----------------------------
Q 012221 283 DGFVMGEGAGVLVMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRAD-G----------------------------- 332 (468)
Q Consensus 283 ~G~v~gEGaaavvL~~~~~A~~~g~~i~a~i~g~~~~~d~~~~~~~~~~-~----------------------------- 332 (468)
+||+.|||++++||++++.|+++|++||++|+|+++++|+.+...|.|. +
T Consensus 1349 ~Gfv~gEGag~vVL~~~~~A~~~G~~I~avI~g~a~~~Dg~~~s~paPg~G~~t~ar~~~~~~ps~~~~~~~r~~~~~~~ 1428 (1878)
T 2uv9_A 1349 NGFMESQGCGVQVIMTAQLALEMGVPIYGIVAMTSTATDKIGRSVPAPGQGVLTTAREKSGNFPSPLLDIKYRRRQLELR 1428 (1878)
T ss_dssp CCBCBBCEEEEEEEEEHHHHHHHTCCCCEEEEEEEEECCCSCSCSSCCCSCGGGGGCCCCCSSCCGGGSHHHHHHHHHHH
T ss_pred CCCcccceeEEEEEeeHHHHHHCCCceEEEEEEEEEecCCCccCCCCCCcchhhhhhhccccCCCcccchHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999876555441 1
Q ss_pred -------------------------------------HHHH-------------------------------HHHHHHHH
Q 012221 333 -------------------------------------LGVS-------------------------------SCIESSLE 344 (468)
Q Consensus 333 -------------------------------------~~~~-------------------------------~~i~~al~ 344 (468)
..++ .+|++||+
T Consensus 1429 ~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~Q~~~~~i~~~~~~q~~~a~~~~g~~~~~~~~~~~~ir~ALa 1508 (1878)
T 2uv9_A 1429 RQQIKQWKESEYLYLQEEVAAIKSQRSEEDGPFDETAYLRERTEHIEREARRQEAEAQTSFGNEFWRRDSRIAPLRGALA 1508 (1878)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTTCCSSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTTTCTTSCHHHHHHH
T ss_pred HHHHHHhhhhhhhhhhHHHHhhhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHhhcccccccChHHHHHHHHHH
Confidence 0122 78999999
Q ss_pred HcCCCCCCcCEEEEccCCCccCCHHHHHHHHHHhcc-----CCCceeeecccccCccccchhHHHHHHHHHHHhcCCcCC
Q 012221 345 DAGVSPEEVNYINAHATSTLAGDLAEINAIKKVFKN-----TTGIKINATKSMIGHCLGAAGGLEAIATVKAITTGWLHP 419 (468)
Q Consensus 345 ~Agl~~~dId~v~~h~~gt~~~D~~E~~al~~~f~~-----~~~~~v~s~k~~~Gh~~~AsG~~~l~~~~~~l~~~~~pp 419 (468)
++||+++||||||+|||||+.||++|.++|.++|+. ..++++++.|+++||+.||||++++++++++|++|.|||
T Consensus 1509 ~aGl~~~DId~veaHGTgT~~gD~~E~~al~~~f~~~~r~~~~pl~v~s~KsliGH~~gAAGa~~li~~l~~L~~g~iPp 1588 (1878)
T 2uv9_A 1509 TWGLTIDDLGVASFHGTSTVANDKNESDVICQQLKHLGRTKGNAVLGIFQKYLTGHPKGAAGAWMLNGCLQVLNTGIVPG 1588 (1878)
T ss_dssp TTTCCGGGEEEEECCCCSCHHHHHHHHHHHHHHHHHHTCCTTCCEEEECTHHHHCBCTTCHHHHHHHHHHHHHTTCEECC
T ss_pred HcCCCHHHeeEEEEcCCCCcccCHHHHHHHHHHHhhcCCCCCCceeEEecccccCChHhHhhHHHHHHHHHHHhcCCCCC
Confidence 999999999999999999999999999999999974 235999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCC-Ccccc--cccccc-cCccEEEEEcccccCeeeEEEEeec
Q 012221 420 SINQFNPEPSV-EFDTV--ANKKQQ-HEVNVAISNSFGFGGHNSVVAFSAF 466 (468)
Q Consensus 420 ~~~~~~~~~~~-~~~~~--~~~~~~-~~~~~~l~~s~g~gG~n~~~vl~~~ 466 (468)
|+|+++|+|.| +++++ +.+..+ ..++++++|||||||+|+|+|++.+
T Consensus 1589 ~~n~d~~dp~i~~~~~v~~~~~~~~~~~~r~a~v~SFGFGG~NahvIle~p 1639 (1878)
T 2uv9_A 1589 NRNADNVDKVMEQFDYIVYPSRSIKTDGIKAFSVTSFGFGQKGAQAIGVHP 1639 (1878)
T ss_dssp CTTCCSBCGGGGGCTTEECCSSCEECSCCCEEEEEEEETTTEEEEEEEECT
T ss_pred CCCCCCCCCccccccccccccccccCCCCCEEEEccCCCCCeeEEEEEecC
Confidence 99999999999 46664 444333 3689999999999999999999975
|
| >3zen_D Fatty acid synthase; transferase, mycolic acid biosynthesis, multifunctional ENZY substrate channeling; HET: FMN; 7.50A {Mycobacterium smegmatis} PDB: 4b3y_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-62 Score=573.17 Aligned_cols=364 Identities=23% Similarity=0.336 Sum_probs=320.7
Q ss_pred CCCccccccC-CCCCCCC-CCccccccCCHHHHHHHHHHHHHHHHcCCCCcccccc----ccccceEEEeecCCCccchH
Q 012221 98 FPTRFGGQIR-GFSAEGY-IDGKNDRRLDDCLRYCIVAGKKALEDADLGADISKKI----DKERAGVLVGTGMGGLTVFS 171 (468)
Q Consensus 98 ~~~~~~g~v~-~~d~~~~-i~~~~~~~~d~~~~l~l~a~~~AL~dAgl~~~~~~~~----~~~~~gv~~g~~~g~~~~~~ 171 (468)
++.+++|+|+ +||+.+| |++++++.|||+++|+++++++||+|||+ ++.++ +..++||++|++.|+.....
T Consensus 2617 ~~~~~gG~i~d~FD~~~fgIs~rea~~mDp~~rL~l~aa~eALedAGi---~p~~l~~~~~~~~vGV~vG~~~gg~~~~~ 2693 (3089)
T 3zen_D 2617 LSRTVGAQIPTGFDPTVWGISPDMASSIDRVALWNIVATVDAFLSSGF---TPTELMRWVHPSQVASTQGTGMGGMTSMQ 2693 (3089)
T ss_dssp CSCCEEECCCTTCCTTTTTCCHHHHHHSCHHHHHHHHHHHHHHTTSCS---CGGGHHHHSCGGGEEEEEEESSCCHHHHH
T ss_pred ccceEEEEcCCCCChhhcCCCHHHHHhcCHHHHHHHHHHHHHHHHcCC---CHHHhhcccCcceeEEEEeecCccHHHHH
Confidence 5678899995 6999998 99999999999999999999999999999 44554 67899999999999988777
Q ss_pred HHHHHHHHhCCCCcCCcCcchhhhhhhHHHHhh-hhCCCCcceeecccChHHHHHHHHHHHHHHhCCCCEEEEEeecccc
Q 012221 172 DGVQALIEKGHRKITPFFIPYAITNMGSALLAI-DLGFMGPNYSISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAI 250 (468)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~ia~-~lgl~Gp~~~v~~acas~l~Al~~A~~~I~~G~~d~~lvgG~e~~~ 250 (468)
..+..++. +....++ .++..+.|..++++++ ++|++||+++|+++|+||+.||++|+++|++|+||++||||+|. +
T Consensus 2694 ~~~~~~~~-~~~~~~~-~~~~~~~~~~aa~is~~~lGl~GPs~tV~tACSSsl~Al~~A~~~IrsG~~d~aLaGGve~-l 2770 (3089)
T 3zen_D 2694 TMYHGNLL-GRAKPND-ILQEVLPNVVAAHVMQSYVGGYGAMVHPVGACATAAVSVEEGVDKIKLGKADLVIAGGFDD-L 2770 (3089)
T ss_dssp HHHHHHHT-TCCCCTT-HHHHTSTTHHHHHHHHHTTCCCSCEECCBCTTCHHHHHHHHHHHHHHTTSCSEEEEEEEEC-C
T ss_pred HHHHHHhc-CCCccch-hhccccccHHHHHHHHHHcCCCCCceeeccchhhHHHHHHHHHHHHHCCCCCeeEEeeecc-c
Confidence 77666554 3333333 4567778999999986 56999999999999999999999999999999999999999999 8
Q ss_pred chhhhhHhhhcccccc------CCCCCCCCCCCCCCCCCCeeecceeEEEEecchhHHHhcCCceEEEEEEEEEcCCCCC
Q 012221 251 IPIGLGGFVACRALSQ------RNDDPQTASRPWDKDRDGFVMGEGAGVLVMESLEHAMKRGAPIIAEYLGGAVNCDAYH 324 (468)
Q Consensus 251 ~p~~~~~~~~~~~l~~------~~~~~~~~~rpfd~~~~G~v~gEGaaavvL~~~~~A~~~g~~i~a~i~g~~~~~d~~~ 324 (468)
++..+..|..++.++. .+.+|++.|||||.+++|+++|||++++||+++++|+++|++||++|.|.+.++|+++
T Consensus 2771 s~~~~~~f~~~~als~~~~~~~~~~sp~~~crpFd~~~dG~v~GEGAgavVL~~~e~A~~~G~~I~avI~g~~~n~Dg~~ 2850 (3089)
T 3zen_D 2771 TLEAIIGFGDMAATADTEMMRAKGISDSKFSRANDRRRLGFLEAQGGGTILLARGDLALKMGLPVLAVVGYAQSFADGVH 2850 (3089)
T ss_dssp CHHHHHHHHHHTCBCCHHHHHHTTCCTTTSCCSSBTTCCCBCBBCEEEEEEEEEHHHHHHHTCCCCEEEEEEEEECCCCC
T ss_pred CHHHHHHHHHhhhhhcchhhhhccCCcccccCccccCCCCEEEeccceEEEEeeHHHHHhCCCceEEEEEEEEEecCCcc
Confidence 9999999999988763 4667899999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCCCh-------HHHHHHHHHHHHHcCCCCCCcCEEEEccCCCccCCHHHHH---HHHHHhccC--CCceeeecccc
Q 012221 325 MTDPRADG-------LGVSSCIESSLEDAGVSPEEVNYINAHATSTLAGDLAEIN---AIKKVFKNT--TGIKINATKSM 392 (468)
Q Consensus 325 ~~~~~~~~-------~~~~~~i~~al~~Agl~~~dId~v~~h~~gt~~~D~~E~~---al~~~f~~~--~~~~v~s~k~~ 392 (468)
...+.|.. .++.++|+++|+++|++|+||||||+|||||++||++|.. ++.++|+.. .+++|+++|++
T Consensus 2851 ~~~~aP~~g~~~a~~~~q~~ai~~AL~~AGl~p~DIdyVEaHGTGT~lgD~~E~~al~al~~~fg~~~~~~~~v~s~Ks~ 2930 (3089)
T 3zen_D 2851 TSIPAPGLGALGAARGGRESTLARSLAQLGVGADDIAVISKHDTSTLANDPNETELHERIADSMGRAPGNPLFIVSQKTL 2930 (3089)
T ss_dssp CCSSCCCCGGGGGSTTGGGSHHHHHHHTTTCCGGGEEEEECCCCCCTTHHHHHHHHHHHHHHHTTCCTTCCEEEECSHHH
T ss_pred cCccCCchhHHhHhhhhHHHHHHHHHHHcCCCHHHeeEEEEecCCcccccHHHHHHHHHHHHHhCccCCCcceecccccc
Confidence 87776642 3566799999999999999999999999999999999999 788888863 46999999999
Q ss_pred cCccccchhHHHHHHHHHHHhcCCcCCCCCCCCCCCCCCcc---cccccccc----cCccEEEEEcccccCeeeEEEEee
Q 012221 393 IGHCLGAAGGLEAIATVKAITTGWLHPSINQFNPEPSVEFD---TVANKKQQ----HEVNVAISNSFGFGGHNSVVAFSA 465 (468)
Q Consensus 393 ~Gh~~~AsG~~~l~~~~~~l~~~~~pp~~~~~~~~~~~~~~---~~~~~~~~----~~~~~~l~~s~g~gG~n~~~vl~~ 465 (468)
+||++||||++++++++++|++++||||+|+++|+|.|+.+ .++.+.++ .++|++++|||||||+|+|+||++
T Consensus 2931 iGH~~gAAG~~~lik~ll~L~~g~iPpt~~~~~~np~i~~~~~~~~~~~~~~w~~~~~~r~a~vnSfGfGG~NahvVle~ 3010 (3089)
T 3zen_D 2931 TGHAKGGAAVFQMMGLCQILRDGVIPPNRSLDCVDDELATSGHFVWVREPLDLRGKFPLKAGLVTSLGFGHVSGLVALVH 3010 (3089)
T ss_dssp HCBCSTTHHHHHHHHHHHHHHHCCBCCCTTCSSBCGGGGGCSSEEECSSCBCCCTTSCCCEEEEEEEETTTEEEEEEEEC
T ss_pred cCCchhhhhHHHHHHHHHHHhcCccCCCCCCCCCCCCccccCCeeecCCCccCCCCCCCCEEEEccccCCCCeEEEEEec
Confidence 99999999999999999999999999999999999998711 12333332 347999999999999999999998
Q ss_pred cC
Q 012221 466 FK 467 (468)
Q Consensus 466 ~~ 467 (468)
++
T Consensus 3011 ~~ 3012 (3089)
T 3zen_D 3011 PE 3012 (3089)
T ss_dssp GG
T ss_pred Cc
Confidence 74
|
| >1wl4_A Acetyl-coenzyme A acetyltransferase 2; thiolase fold; HET: COA; 1.55A {Homo sapiens} PDB: 1wl5_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.8e-38 Score=314.35 Aligned_cols=270 Identities=20% Similarity=0.279 Sum_probs=215.2
Q ss_pred HHHHHHHHHHHHHHHcCCCCccccccccccceEEEeecCCCccchHHHHHHHHHhCCCCcCCcCcchhhhhhhHHHHhhh
Q 012221 126 CLRYCIVAGKKALEDADLGADISKKIDKERAGVLVGTGMGGLTVFSDGVQALIEKGHRKITPFFIPYAITNMGSALLAID 205 (468)
Q Consensus 126 ~~~l~l~a~~~AL~dAgl~~~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~ia~~ 205 (468)
..+|+++++++||+|||+ ++++++ ++++|+..+... ...++.++++.
T Consensus 30 ~~~L~~~a~~~Al~dAGl---~~~~id----~v~~g~~~~~~~--------------------------~~~~a~~ia~~ 76 (397)
T 1wl4_A 30 VQDLGSTVIKEVLKRATV---APEDVS----EVIFGHVLAAGC--------------------------GQNPVRQASVG 76 (397)
T ss_dssp HHHHHHHHHHHHHHHHTC---CGGGCC----EEEEECSCCTTS--------------------------CSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCC---CHHHCC----EEEEEecCCCCC--------------------------CCHHHHHHHHH
Confidence 468999999999999999 556666 688887654321 12357889999
Q ss_pred hCC--CCcceeecccChHHHHHHHHHHHHHHhCCCCEEEEEeeccccc-hhhh--------------h-----H----h-
Q 012221 206 LGF--MGPNYSISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAII-PIGL--------------G-----G----F- 258 (468)
Q Consensus 206 lgl--~Gp~~~v~~acas~l~Al~~A~~~I~~G~~d~~lvgG~e~~~~-p~~~--------------~-----~----~- 258 (468)
+|+ +||+++|+++|+|++.||++|+++|++|++|++||||+|.+.. |... . + |
T Consensus 77 lgl~~~~p~~~v~~aCaSg~~Ai~~A~~~I~~G~~d~vlagG~e~~s~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 156 (397)
T 1wl4_A 77 AGIPYSVPAWSCQMICGSGLKAVCLAVQSIGIGDSSIVVAGGMENMSKAPHLAYLRTGVKIGEMPLTDSILCDGLTDAFH 156 (397)
T ss_dssp TTCCTTSCEEEECCGGGHHHHHHHHHHHHHHTTSCSEEEEEEEEESTTCCEECCCSSCCSSSCCCCEEHHHHHTTBCTTT
T ss_pred cCCCCCccEEEecCcChhHHHHHHHHHHHHHCCCCCEEEEEEEeecCCCccccccccccccCcccccchhccccccCccc
Confidence 999 8999999999999999999999999999999999999998542 2110 0 0 0
Q ss_pred -hhcccccc---------------------------------------------------CCCC-CCC--------CCCC
Q 012221 259 -VACRALSQ---------------------------------------------------RNDD-PQT--------ASRP 277 (468)
Q Consensus 259 -~~~~~l~~---------------------------------------------------~~~~-~~~--------~~rp 277 (468)
..++.+++ ..+. +.. .+||
T Consensus 157 ~~~~g~~a~~~~~~~g~tre~~~~~a~~s~~~A~~a~~~g~~~~ei~pv~~~~~~~~~~~~~d~~~r~~~t~e~~~~~rp 236 (397)
T 1wl4_A 157 NCHMGITAENVAKKWQVSREDQDKVAVLSQNRTENAQKAGHFDKEIVPVLVSTRKGLIEVKTDEFPRHGSNIEAMSKLKP 236 (397)
T ss_dssp CCBHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTTTTTTBCCEEEEETTEEEEECSCSCCCTTCCHHHHHTSCC
T ss_pred cchHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhHhcCCcccceeeeeeccCCCceeeccccccCCCCCHHHHhcCCC
Confidence 00111110 0111 111 5899
Q ss_pred -CCCCCCCee-------ecceeEEEEecchhHHHhcCCceEEEEEEEEEcCCCCCCCCCCCChHHHHHHHHHHHHHcCCC
Q 012221 278 -WDKDRDGFV-------MGEGAGVLVMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAGVS 349 (468)
Q Consensus 278 -fd~~~~G~v-------~gEGaaavvL~~~~~A~~~g~~i~a~i~g~~~~~d~~~~~~~~~~~~~~~~~i~~al~~Agl~ 349 (468)
||.+++|++ ++|||+++||++++.|+++|.+++++|+|++.+++ .|++.+.++..+++++|+++|++
T Consensus 237 vfd~~~~G~vt~~~~s~~~dGAaavvL~s~~~A~~~g~~~~a~i~g~~~~~~-----~p~~~~~~~~~a~~~al~~Agl~ 311 (397)
T 1wl4_A 237 YFLTDGTGTVTPANASGINDGAAAVVLMKKSEADKRGLTPLARIVSWSQVGV-----EPSIMGIGPIPAIKQAVTKAGWS 311 (397)
T ss_dssp SSCCSSCCCCCTTSBCCCEEEEEEEEEEEHHHHHHTTCCCSEEEEEEEEEEC-----CGGGGGGTHHHHHHHHHHHHTCC
T ss_pred ccCCCCCCCEechhcCCccchhheeeEecHHHHHHcCCCccEEEEEEEEeec-----ChhhccchHHHHHHHHHHHcCCC
Confidence 999999999 99999999999999999999999999999999873 45556677889999999999999
Q ss_pred CCCcCEEEEccCCCccCCHHHHHHHHHHhcc-CCCceeeecccccCccccchhHHHHHHHHHHHhcCCcCCCCCCCCCCC
Q 012221 350 PEEVNYINAHATSTLAGDLAEINAIKKVFKN-TTGIKINATKSMIGHCLGAAGGLEAIATVKAITTGWLHPSINQFNPEP 428 (468)
Q Consensus 350 ~~dId~v~~h~~gt~~~D~~E~~al~~~f~~-~~~~~v~s~k~~~Gh~~~AsG~~~l~~~~~~l~~~~~pp~~~~~~~~~ 428 (468)
++||||||.|..++ ....++.+.|+. ..+++++++|.++||++||+|+.++++++++|+++
T Consensus 312 ~~dId~ie~~d~f~-----~~~l~~~~~lg~~~~~vn~~gg~~~~GHp~gAsG~~~~~~~~~~L~~~------------- 373 (397)
T 1wl4_A 312 LEDVDIFEINEAFA-----AVSAAIVKELGLNPEKVNIEGGAIALGHPLGASGCRILVTLLHTLERM------------- 373 (397)
T ss_dssp GGGCCEEEECCSBH-----HHHHHHHHHHTCCGGGBSTTCCHHHHCCCHHHHHHHHHHHHHHHHHHH-------------
T ss_pred HHHCCEEEEecccH-----HHHHHHHHHcCCCCcCcCCCcCccccCCChhhhHHHHHHHHHHHHhhc-------------
Confidence 99999999884443 223457778875 34689999999999999999999999999999984
Q ss_pred CCCcccccccccccCccEEEEEcccccCeeeEEEEee
Q 012221 429 SVEFDTVANKKQQHEVNVAISNSFGFGGHNSVVAFSA 465 (468)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~l~~s~g~gG~n~~~vl~~ 465 (468)
..++++++..+.||.+.++||++
T Consensus 374 --------------~~~~gl~~~~~ggG~~~a~~~e~ 396 (397)
T 1wl4_A 374 --------------GRSRGVAALCIGGGMGIAMCVQR 396 (397)
T ss_dssp --------------TCCEEEEEEEETTTEEEEEEEEE
T ss_pred --------------CCCEEEEEEecccchheEEEEEe
Confidence 23578888777889999999987
|
| >1wdk_C 3-ketoacyl-COA thiolase; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: c.95.1.1 c.95.1.1 PDB: 1wdl_C* 1wdm_C* 2d3t_C* | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-37 Score=308.13 Aligned_cols=271 Identities=19% Similarity=0.228 Sum_probs=216.8
Q ss_pred HHHHHHHHHHHHHHHc-CCCCccccccccccceEEEeecCCCccchHHHHHHHHHhCCCCcCCcCcchhhhhhhHHHHhh
Q 012221 126 CLRYCIVAGKKALEDA-DLGADISKKIDKERAGVLVGTGMGGLTVFSDGVQALIEKGHRKITPFFIPYAITNMGSALLAI 204 (468)
Q Consensus 126 ~~~l~l~a~~~AL~dA-gl~~~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~ia~ 204 (468)
..+|+++++++||+|+ |+ ++++++ +|++|+..+... ..+.++.++++
T Consensus 30 ~~~L~~~a~~~AL~dA~gl---~~~~id----~v~~g~~~~~~~-------------------------~~~~~a~~ia~ 77 (390)
T 1wdk_C 30 AEDMSAHLISKVLERNSKV---DPGEVE----DVIWGCVNQTLE-------------------------QGWNIARMASL 77 (390)
T ss_dssp HHHHHHHHHHHHHHHCTTS---CGGGEE----EEEEECSSBSBT-------------------------TTTTHHHHHHT
T ss_pred HHHHHHHHHHHHHHhccCC---CHHHCC----EEEEEeeccccC-------------------------CCCcHHHHHHH
Confidence 5789999999999999 99 555665 789987644321 01346889999
Q ss_pred hhCC--CCcceeecccChHHHHHHHHHHHHHHhCCCCEEEEEeeccccc-hhhhhHh-h------------hccc-----
Q 012221 205 DLGF--MGPNYSISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAII-PIGLGGF-V------------ACRA----- 263 (468)
Q Consensus 205 ~lgl--~Gp~~~v~~acas~l~Al~~A~~~I~~G~~d~~lvgG~e~~~~-p~~~~~~-~------------~~~~----- 263 (468)
.||+ ++|+++|+++|+|++.||++|+++|++|++|++||||+|.+.. |.....| . .++.
T Consensus 78 ~lgl~~~~p~~~v~~aCaS~~~Al~~A~~~I~~G~~d~vlvgG~e~~s~~p~~~~~~~~~~~~~~~~~~~~~~g~~a~~~ 157 (390)
T 1wdk_C 78 MTQIPHTSAAQTVSRLCGSSMSALHTAAQAIMTGNGDVFVVGGVEHMGHVSMMHGVDPNPHMSLYAAKASGMMGLTAEML 157 (390)
T ss_dssp TSSSCTTSEEEEEECGGGHHHHHHHHHHHHHHTTSCSEEEEEEEEETTTSCTTTTBCCCGGGGGTSCGGGGSHHHHHHHH
T ss_pred HcCCCCCccEEEEcccchhHHHHHHHHHHHHHcCCCCEEEEeeeeccccCCcccccccCccccccCCcchhHHHHHHHHH
Confidence 9999 8999999999999999999999999999999999999997532 3211000 0 0111
Q ss_pred -----cccC----------------------CCC--C------CCCCCCCCCC---------------------CCCee-
Q 012221 264 -----LSQR----------------------NDD--P------QTASRPWDKD---------------------RDGFV- 286 (468)
Q Consensus 264 -----l~~~----------------------~~~--~------~~~~rpfd~~---------------------~~G~v- 286 (468)
++++ .++ | .+.++|||.+ ++|++
T Consensus 158 ~~~~g~s~e~~~~~a~~s~~~a~~a~~~g~~~~ei~p~~~~~~~~~~~~fd~d~~~r~~~t~e~~~~~~~i~~p~~G~vt 237 (390)
T 1wdk_C 158 GKMHGISREQQDAFAVRSHQLAHKATVEGKFKDEIIPMQGYDENGFLKIFDYDETIRPDTTLESLAALKPAFNPKGGTVT 237 (390)
T ss_dssp HHHHTCCHHHHHHHHHHHHHHHHHHHHTTTTTTTBCCEEEECTTCCEEEECSCTTCCTTCCHHHHHTSCCSSCTTTCCCC
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHHHhcCCcccceeeeeeccCCCcceeeccccccCCCCCHHHHhcCCCcccCCCCcEe
Confidence 1110 000 1 1122688888 79999
Q ss_pred ------ecceeEEEEecchhHHHhcCCceEEEEEEEEEcCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCcCEEEEcc
Q 012221 287 ------MGEGAGVLVMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAGVSPEEVNYINAHA 360 (468)
Q Consensus 287 ------~gEGaaavvL~~~~~A~~~g~~i~a~i~g~~~~~d~~~~~~~~~~~~~~~~~i~~al~~Agl~~~dId~v~~h~ 360 (468)
++||++++||++++.|+++|.+++++|+|++.+++ .|.+.+.++..+++++|+++|++|+||||||+|+
T Consensus 238 ~~~~~~~~dGAaavvL~s~~~A~~~g~~~~a~I~g~~~~~~-----~p~~~~~~~~~a~~~al~~Agl~~~dId~ve~~d 312 (390)
T 1wdk_C 238 AGTSSQITDGASCMIVMSAQRAKDLGLEPLAVIRSMAVAGV-----DPAIMGYGPVPATQKALKRAGLNMADIDFIELNE 312 (390)
T ss_dssp GGGBCCCEEEEEEEEEEEHHHHHHTTCCCSEEEEEEEEEEC-----CGGGGGGTHHHHHHHHHHHHTCCGGGCCEEEECC
T ss_pred chhcCcccchhheeEEecHHHHHHcCCCccEEEEEEEEecc-----ChhhcchhHHHHHHHHHHHcCCChhhCcEEEecc
Confidence 99999999999999999999999999999999874 3445566778999999999999999999999999
Q ss_pred CCCccCCHHHHHHHHHHhccC----CCceeeecccccCccccchhHHHHHHHHHHHhcCCcCCCCCCCCCCCCCCccccc
Q 012221 361 TSTLAGDLAEINAIKKVFKNT----TGIKINATKSMIGHCLGAAGGLEAIATVKAITTGWLHPSINQFNPEPSVEFDTVA 436 (468)
Q Consensus 361 ~gt~~~D~~E~~al~~~f~~~----~~~~v~s~k~~~Gh~~~AsG~~~l~~~~~~l~~~~~pp~~~~~~~~~~~~~~~~~ 436 (468)
+++ .|..++.+.|+.. .+++++++|.++||++||+|++++++++++|+++
T Consensus 313 ~f~-----~~~~~~~~~lg~~~~~~~~vn~~gg~~~~GHp~gasG~~~~~~~~~~L~~~--------------------- 366 (390)
T 1wdk_C 313 AFA-----AQALPVLKDLKVLDKMNEKVNLHGGAIALGHPFGCSGARISGTLLNVMKQN--------------------- 366 (390)
T ss_dssp SBH-----HHHHHHHHHTTCGGGHHHHBSTTCCHHHHCCCHHHHHHHHHHHHHHHHHHT---------------------
T ss_pred CCH-----HHHHHHHHHcCCCCCCCCcCCCCcCcccccCCcchhHHHHHHHHHHHHhhc---------------------
Confidence 987 4667777787752 3588999999999999999999999999999985
Q ss_pred ccccccCccEEEEEcccccCeeeEEEEee
Q 012221 437 NKKQQHEVNVAISNSFGFGGHNSVVAFSA 465 (468)
Q Consensus 437 ~~~~~~~~~~~l~~s~g~gG~n~~~vl~~ 465 (468)
+.+++++.+.+.||.+.++||++
T Consensus 367 ------~~~~gl~~~~~ggG~~~a~~~~~ 389 (390)
T 1wdk_C 367 ------GGTFGLSTMCIGLGQGIATVFER 389 (390)
T ss_dssp ------TCSEEEEEEEETTTEEEEEEEEC
T ss_pred ------CCCEEEEEecccchheEEEEEEe
Confidence 13577887777889999999986
|
| >1ulq_A Putative acetyl-COA acetyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 3.00A {Thermus thermophilus} SCOP: c.95.1.1 c.95.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-36 Score=304.52 Aligned_cols=270 Identities=19% Similarity=0.238 Sum_probs=214.0
Q ss_pred HHHHHHHHHHHHHHHcCCCCccccccccccceEEEeecCCCccchHHHHHHHHHhCCCCcCCcCcchhhhhhhHHHHhhh
Q 012221 126 CLRYCIVAGKKALEDADLGADISKKIDKERAGVLVGTGMGGLTVFSDGVQALIEKGHRKITPFFIPYAITNMGSALLAID 205 (468)
Q Consensus 126 ~~~l~l~a~~~AL~dAgl~~~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~ia~~ 205 (468)
..+|+++++++||+|+|+ ++++++ +|++|+..++.. ..+..+.+++..
T Consensus 26 ~~~L~~~Aa~~Al~dAgl---~~~~id----~v~~g~~~~~~~-------------------------~~~~~a~~va~~ 73 (401)
T 1ulq_A 26 PDDLLAHALSVLVDRSGV---PKEEVE----DVYAGCANQAGE-------------------------DNRNVARMALLL 73 (401)
T ss_dssp HHHHHHHHHHHHHHHHTC---CGGGCC----EEEEECSCCSST-------------------------TTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCC---CHHHCC----EEEEEecccCCC-------------------------CCChHHHHHHHH
Confidence 467999999999999999 556666 799987643221 013458899999
Q ss_pred hCC--CCcceeecccChHHHHHHHHHHHHHHhCCCCEEEEEeeccccc-hhhh------------------------hHh
Q 012221 206 LGF--MGPNYSISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAII-PIGL------------------------GGF 258 (468)
Q Consensus 206 lgl--~Gp~~~v~~acas~l~Al~~A~~~I~~G~~d~~lvgG~e~~~~-p~~~------------------------~~~ 258 (468)
+|+ ++|+++|+++|+|++.||++|+++|++|++|++||+|+|.+.. |... .++
T Consensus 74 lGl~~~~p~~~v~~aCas~~~Al~~A~~~I~~G~~d~vLv~G~e~~s~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 153 (401)
T 1ulq_A 74 AGFPVEVAGCTVNRLCGSGLEAVAQAARAIWAGEGKVYIGSGVESMSRAPYAVPKPERGFPTGNLVMYDTTLGWRFVNPK 153 (401)
T ss_dssp TTCCTTCEEEEEECGGGHHHHHHHHHHHHHHTTSCSEEEEEEEEESSSCCEEECCCCSSSCCSCEEEEETTSSCCSCCHH
T ss_pred hCCCCCccEeeccccchHHHHHHHHHHHHHHCCCCCEEEEEEEeecCCCcccccccccccccCcccccchhhhccccccc
Confidence 999 7899999999999999999999999999999999999997543 3210 111
Q ss_pred h--h-----cccc---------------------c-------------cCC--------------CCCCC----------
Q 012221 259 V--A-----CRAL---------------------S-------------QRN--------------DDPQT---------- 273 (468)
Q Consensus 259 ~--~-----~~~l---------------------~-------------~~~--------------~~~~~---------- 273 (468)
. . ++.+ + ++. .++++
T Consensus 154 ~p~~~~~~~~~~~a~~~~~~~g~sre~~~~~a~~s~~~A~~~~~ag~~~~ei~P~~~~~~~~~~~~~~d~~~r~~~t~e~ 233 (401)
T 1ulq_A 154 MQALYGTESMGETAENLAEMYGIRREEQDRFALLSHQKAVRAWEEGRFQDEVVPVPVKRGKEEILVEQDEGPRRDTSLEK 233 (401)
T ss_dssp HHHHSCCCCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHTTTTTTTBCCEEEEETTEEEEECSCSCCCTTCCHHH
T ss_pred cccccccchHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhcCCcccceeceeecCCCCceeeccccccCCCCCHHH
Confidence 1 0 0100 0 000 00111
Q ss_pred --CCCC-CCCCCCCee-------ecceeEEEEecchhHHHhcCCceEEEEEEEEEcCCCCCCCCCCCChHHHHHHHHHHH
Q 012221 274 --ASRP-WDKDRDGFV-------MGEGAGVLVMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSL 343 (468)
Q Consensus 274 --~~rp-fd~~~~G~v-------~gEGaaavvL~~~~~A~~~g~~i~a~i~g~~~~~d~~~~~~~~~~~~~~~~~i~~al 343 (468)
.+|| ||. +|++ ++|||++|||+++++|+++|.+++++|+|++.+++. |...+.+...+++++|
T Consensus 234 ~~~~rpif~~--~G~vt~~~~~~~~dGAaavvL~s~~~A~~~g~~~~a~i~g~~~~~~~-----p~~~~~~~~~a~~~al 306 (401)
T 1ulq_A 234 LAALRPVFRE--GGTVTAGNSSPLNDGAAAVLLVSDDYAKAHGLRPLARVRAIAVAGVP-----PRIMGIGPVPATRKAL 306 (401)
T ss_dssp HHHSCBSSST--TCSCBGGGBCCCEEEEEEEEEEEHHHHHHTTCCCSEEEEEEEEEECC-----GGGGGGTHHHHHHHHH
T ss_pred HhhCCCccCC--CCCeechhcCCccchheEEEEecHHHHHHcCCCceEEEEEEEEecCC-----ccccchhHHHHHHHHH
Confidence 3467 764 6877 799999999999999999999999999999999863 3334556789999999
Q ss_pred HHcCCCCCCcCEEEEccCCCccCCHHHHHHHHHHhc---cCCCceeeecccccCccccchhHHHHHHHHHHHhcCCcCCC
Q 012221 344 EDAGVSPEEVNYINAHATSTLAGDLAEINAIKKVFK---NTTGIKINATKSMIGHCLGAAGGLEAIATVKAITTGWLHPS 420 (468)
Q Consensus 344 ~~Agl~~~dId~v~~h~~gt~~~D~~E~~al~~~f~---~~~~~~v~s~k~~~Gh~~~AsG~~~l~~~~~~l~~~~~pp~ 420 (468)
+++|++++||||||+|++++. .|+..++. |+ +..++++++++..+||++||+|+.++++++++|+++
T Consensus 307 ~~Agl~~~dId~ie~heafa~----~~l~~~~~-lg~~~~~~~vn~~Gg~~a~GHp~gAsG~~~~~~~~~~L~~~----- 376 (401)
T 1ulq_A 307 ERAGLSFSDLGLIELNEAFAA----QALAVLRE-WSLSMEDQRLNPNGGAIALGHPLGASGARILTTLVHEMRRR----- 376 (401)
T ss_dssp HHTTCCGGGCSEEEECCSBHH----HHHHHHHH-HTCCTTCTTBSTTCCHHHHCCCHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHcCCCHHHcCEEEEecchHH----HHHHHHHH-cCCCCCCCccCCCCcccccCCCcchHHHHHHHHHHHHHhhc-----
Confidence 999999999999999998884 56666654 44 235788999999999999999999999999999986
Q ss_pred CCCCCCCCCCCcccccccccccCccEEEEEcccccCeeeEEEEeec
Q 012221 421 INQFNPEPSVEFDTVANKKQQHEVNVAISNSFGFGGHNSVVAFSAF 466 (468)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~g~gG~n~~~vl~~~ 466 (468)
+.++++++++++||+|+++||+++
T Consensus 377 ----------------------~~~~gl~~~~~ggG~~~a~v~~~~ 400 (401)
T 1ulq_A 377 ----------------------KVQFGLATMCIGVGQGIAVVVEGM 400 (401)
T ss_dssp ----------------------TCSEEEEEEEETTTEEEEEEEEEC
T ss_pred ----------------------CCCEEEEEeecCCcccEEEEEEeC
Confidence 246899999999999999999974
|
| >2wu9_A 3-ketoacyl-COA thiolase 2, peroxisomal; cysteine oxidation, fatty acid metabolism, oxylipin biosynthesis, plant lipid metabolism; 1.50A {Arabidopsis thaliana} PDB: 2c7y_A 2c7z_A 2wua_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-35 Score=298.31 Aligned_cols=272 Identities=18% Similarity=0.273 Sum_probs=213.0
Q ss_pred HHHHHHHHHHHHHHHcCCCCccccccccccceEEEeecCCCccchHHHHHHHHHhCCCCcCCcCcchhhhhhhHHHHhhh
Q 012221 126 CLRYCIVAGKKALEDADLGADISKKIDKERAGVLVGTGMGGLTVFSDGVQALIEKGHRKITPFFIPYAITNMGSALLAID 205 (468)
Q Consensus 126 ~~~l~l~a~~~AL~dAgl~~~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~ia~~ 205 (468)
..+|+++++++||+|||+ ++++++ +|++|+..++.. ..+..+.+++..
T Consensus 55 ~~~La~~Aa~~AL~dAGl---~~~~Id----~vi~g~~~~~~~-------------------------~~~~~a~~va~~ 102 (442)
T 2wu9_A 55 PDDLLAPVLRALIEKTNL---NPSEVG----DIVVGTVLAPGS-------------------------QRASECRMAAFY 102 (442)
T ss_dssp HHHHHHHHHHHHHHHHTC---CGGGCC----CEEEECCSSBHH-------------------------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCC---CHHHCC----EEEEEeecCccC-------------------------CCChHHHHHHHH
Confidence 468999999999999999 556666 689987643211 123457889999
Q ss_pred hCC--CCcceeecccChHHHHHHHHHHHHHHhCCCCEEEEEeeccccc-hh---------hhh-Hhh-----h-------
Q 012221 206 LGF--MGPNYSISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAII-PI---------GLG-GFV-----A------- 260 (468)
Q Consensus 206 lgl--~Gp~~~v~~acas~l~Al~~A~~~I~~G~~d~~lvgG~e~~~~-p~---------~~~-~~~-----~------- 260 (468)
+|+ ++|+++|+++|+|++.||++|+++|++|++|++||+|+|.+.. |. .+. .+. .
T Consensus 103 lGl~~~~p~~~v~~aCaSg~~Al~~A~~~I~sG~~d~vLvgG~e~~s~~p~~~~~~~~~~~~~~~~~~~~~~~mg~~A~~ 182 (442)
T 2wu9_A 103 AGFPETVAVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMTTNPMAWEGSVNPAVKKFAQAQNCLLPMGVTSEN 182 (442)
T ss_dssp TTCCTTSCEEEEECGGGHHHHHHHHHHHHHHTTSCSEEEEEEEEETTTSCCCCCSCCCGGGGGCHHHHHTTSCHHHHHHH
T ss_pred cCCCCCceEEEeCCcCHHHHHHHHHHHHHHHCCCCCEEEEEEEeecCCCccccccccchhhhhccccccchhHHHHHHHH
Confidence 999 7899999999999999999999999999999999999997533 21 000 000 0
Q ss_pred ----------------------------ccccccC---------C----------CCCCC------------CCCC-CCC
Q 012221 261 ----------------------------CRALSQR---------N----------DDPQT------------ASRP-WDK 280 (468)
Q Consensus 261 ----------------------------~~~l~~~---------~----------~~~~~------------~~rp-fd~ 280 (468)
.+.+... . .+.++ .+|| ||.
T Consensus 183 ~~~~~gisre~~~~~A~~s~~~A~~~p~ag~~~~ei~pv~~~~~~~~~~~~~~~~~~~De~~r~~~t~e~~~~~rpvfd~ 262 (442)
T 2wu9_A 183 VAQRFGVSRQEQDQAAVDSHRKAAAATAAGKFKDEIIPVKTKLVDPKTGDEKPITVSVDDGIRPTTTLASLGKLKPVFKK 262 (442)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHHHHHHHHTTTTTTTBCCEEEEEECTTTCCEEEEEECSCTTCCTTCCHHHHHTSCCSSCT
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHhChhcccccccccceeeccccccccccCceeeecccCcCCCCCHHHHhcCCCccCC
Confidence 0111110 0 00011 3456 764
Q ss_pred CCCCee-------ecceeEEEEecchhHHHhcCCceEEEEEEEEEcCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCc
Q 012221 281 DRDGFV-------MGEGAGVLVMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAGVSPEEV 353 (468)
Q Consensus 281 ~~~G~v-------~gEGaaavvL~~~~~A~~~g~~i~a~i~g~~~~~d~~~~~~~~~~~~~~~~~i~~al~~Agl~~~dI 353 (468)
+|++ ++||+++|||++++.|+++|.+++++|+|++.+++ .|...+.+...+++++|++||++++||
T Consensus 263 --~G~vt~~n~s~~~DGAaavvL~s~e~A~~~g~~~~a~I~g~~~~~~-----~p~~~~~~~~~A~~~Al~~AGl~~~DI 335 (442)
T 2wu9_A 263 --DGTTTAGNSSQVSDGAGAVLLMKRSVAMQKGLPVLGVFRTFAAVGV-----DPAIMGIGPAVAIPAAVKAAGLELDDI 335 (442)
T ss_dssp --TCCCCGGGBCCCEEEEEEEEEEEHHHHHHHTCCCCEEEEEEEEEEC-----CGGGGGGHHHHHHHHHHHHTTCCGGGC
T ss_pred --CCCeechhcCCCCCceEEEEEeeHHHHHHcCCCceEEEEEEEEecC-----CchhcchHHHHHHHHHHHHcCCCHHHC
Confidence 6887 69999999999999999999999999999999886 344456678899999999999999999
Q ss_pred CEEEEccCCCccCCHHHHHHHHHHhcc-CCCceeeecccccCccccchhHHHHHHHHHHHhcCCcCCCCCCCCCCCCCCc
Q 012221 354 NYINAHATSTLAGDLAEINAIKKVFKN-TTGIKINATKSMIGHCLGAAGGLEAIATVKAITTGWLHPSINQFNPEPSVEF 432 (468)
Q Consensus 354 d~v~~h~~gt~~~D~~E~~al~~~f~~-~~~~~v~s~k~~~Gh~~~AsG~~~l~~~~~~l~~~~~pp~~~~~~~~~~~~~ 432 (468)
||||+|+++|. .|+.+++. |+- ..++++++++..+||++||+|+.++++++++|+++. +
T Consensus 336 d~iE~h~aft~----~~l~~~~~-lG~~~~~vN~~GG~~a~GHp~GAsG~~~~~~~v~~Lr~~~--~------------- 395 (442)
T 2wu9_A 336 DLFEINEAFAS----QFVYCRNK-LGLDPEKINVNGGAMAIGHPLGATGARCVATLLHEMKRRG--K------------- 395 (442)
T ss_dssp CEEEECCSBHH----HHHHHHHH-HTCCGGGBSTTCCHHHHCCCHHHHHHHHHHHHHHHHHHHC--T-------------
T ss_pred CEEEEeCCChH----HHHHHHHH-hCCCCCCcCCCccHhhcCCchhHHHHHHHHHHHHHHhccC--C-------------
Confidence 99999999996 57777754 443 346788889889999999999999999999999863 0
Q ss_pred ccccccccccCccEEEE-EcccccCeeeEEEEeecC
Q 012221 433 DTVANKKQQHEVNVAIS-NSFGFGGHNSVVAFSAFK 467 (468)
Q Consensus 433 ~~~~~~~~~~~~~~~l~-~s~g~gG~n~~~vl~~~~ 467 (468)
+.+++++ +++| ||.|+++||++++
T Consensus 396 ----------~~~~glas~~~G-GG~~~a~v~~~~~ 420 (442)
T 2wu9_A 396 ----------DCRFGVVSMCIG-TGMGAAAVFERGD 420 (442)
T ss_dssp ----------TCCEEEEEEEET-TTEEEEEEEEECS
T ss_pred ----------CCCEEEEEeecc-cchheEEEEEecc
Confidence 3468884 6788 9999999999864
|
| >2vu1_A Acetyl-COA acetyltransferase; acyltransferase, PHB biosynthesis, thiolase FOL; HET: CSO OPI; 1.51A {Zoogloea ramigera} PDB: 1nl7_A* 1ou6_A* 2vu0_A* 1m4s_A* 2vu2_A* 2wkv_A* 2wku_A* 1m1t_A 1m3k_A 1m1o_A 1m3z_A* 2vtz_A* 2wl5_A* 2wkt_A* 2wl4_A* 1m4t_A* 2wl6_A 1qfl_A* 1dlv_A* 1dlu_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=7.9e-36 Score=299.76 Aligned_cols=268 Identities=19% Similarity=0.261 Sum_probs=209.9
Q ss_pred HHHHHHHHHHHHHHHcCCCCccccccccccceEEEeecCCCccchHHHHHHHHHhCCCCcCCcCcchhhhhhhHHHHhhh
Q 012221 126 CLRYCIVAGKKALEDADLGADISKKIDKERAGVLVGTGMGGLTVFSDGVQALIEKGHRKITPFFIPYAITNMGSALLAID 205 (468)
Q Consensus 126 ~~~l~l~a~~~AL~dAgl~~~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~ia~~ 205 (468)
..+|+++++++||+|+|+ ++++++ ++++|+..+... ....+.++++.
T Consensus 27 ~~~L~~~a~~~Al~dAgl---~~~~id----~~~~g~~~~~~~--------------------------~~~~a~~ia~~ 73 (392)
T 2vu1_A 27 AHELGATVISAVLERAGV---AAGEVN----EVILGQVLPAGE--------------------------GQNPARQAAMK 73 (392)
T ss_dssp HHHHHHHHHHHHHHHHTC---CGGGCC----EEEEECSCCTTS--------------------------CSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCC---CHHHCC----EEEEEecCCCCC--------------------------CcHHHHHHHHH
Confidence 568999999999999999 556666 577776543211 12357899999
Q ss_pred hCCC--CcceeecccChHHHHHHHHHHHHHHhCCCCEEEEEeeccccc-hhh----h-------hHhh------------
Q 012221 206 LGFM--GPNYSISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAII-PIG----L-------GGFV------------ 259 (468)
Q Consensus 206 lgl~--Gp~~~v~~acas~l~Al~~A~~~I~~G~~d~~lvgG~e~~~~-p~~----~-------~~~~------------ 259 (468)
+|++ +|+++|+++|+|++.||++|+++|++|++|++||||+|.+.. |.. . ..+.
T Consensus 74 lgl~~~~p~~~v~~aCaSgl~Al~~A~~~I~~G~~d~vlvgG~e~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (392)
T 2vu1_A 74 AGVPQEATAWGMNQLCGSGLRAVALGMQQIATGDASIIVAGGMESMSMAPHCAHLRGGVKMGDFKMIDTMIKDGLTDAFY 153 (392)
T ss_dssp TTCCTTSEEEEEECGGGHHHHHHHHHHHHHHTTSCSCEEEEEEEESTTCCEEECCTTCCCSSCEEEEEHHHHHHTBCTTT
T ss_pred cCCCCCceEEEecccchHHHHHHHHHHHHHHCCCCCEEEEEEEeccCCCccccccccccccCcccccchhhhcccccccc
Confidence 9998 999999999999999999999999999999999999997432 220 0 0000
Q ss_pred --hcccc----------cc----------------------CCCC--C-----CCCCCCCCCC-----------------
Q 012221 260 --ACRAL----------SQ----------------------RNDD--P-----QTASRPWDKD----------------- 281 (468)
Q Consensus 260 --~~~~l----------~~----------------------~~~~--~-----~~~~rpfd~~----------------- 281 (468)
.++.+ ++ ..++ | ...|+|||.+
T Consensus 154 ~~~~~~~a~~~~~~~g~s~e~~~~~a~~s~~~A~~~~~ag~~~~ei~p~~~~~~~~~~~f~~d~~~r~~~t~e~~~~~~~ 233 (392)
T 2vu1_A 154 GYHMGTTAENVAKQWQLSRDEQDAFAVASQNKAEAAQKDGRFKDEIVPFIVKGRKGDITVDADEYIRHGATLDSMAKLRP 233 (392)
T ss_dssp CCBHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHTTTTTTBCCEEECCTTCCEEECSCSSCCTTCCHHHHHTCCC
T ss_pred cchHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhHhcCCccceeeeeeeccCCCceeeccccccCCCCCHHHHhcCCC
Confidence 01111 10 0000 1 0126788887
Q ss_pred ---CCCee-------ecceeEEEEecchhHHHhcCCceEEEEEEEEEcCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCC
Q 012221 282 ---RDGFV-------MGEGAGVLVMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAGVSPE 351 (468)
Q Consensus 282 ---~~G~v-------~gEGaaavvL~~~~~A~~~g~~i~a~i~g~~~~~d~~~~~~~~~~~~~~~~~i~~al~~Agl~~~ 351 (468)
++|++ ++||++++||++++.|+++|.+++++|+|++.+++ .|.+.+.++..+++++|+++|++|+
T Consensus 234 v~~~~g~vt~~~~~~~~dGAaavvL~s~~~A~~~g~~~~a~i~g~~~~~~-----~p~~~~~~~~~a~~~al~~agl~~~ 308 (392)
T 2vu1_A 234 AFDKEGTVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGV-----DPKVMGTGPIPASRKALERAGWKIG 308 (392)
T ss_dssp SSCTTCCCCSSSBCCCEEEEEEEEEEEHHHHHHHTCCCSEEEEEEEEEEC-----CGGGGGGTHHHHHHHHHHHHTCCGG
T ss_pred ccCCCCCeeCcccCCccChhheeeEecHHHHHhcCCCccEEEEEEEEeec-----ChhhcchhHHHHHHHHHHHcCCCHH
Confidence 78999 99999999999999999999999999999999873 3455566778999999999999999
Q ss_pred CcCEEEEccCCCccCCHHHHHH--HHHHhcc-CCCceeeecccccCccccchhHHHHHHHHHHHhcCCcCCCCCCCCCCC
Q 012221 352 EVNYINAHATSTLAGDLAEINA--IKKVFKN-TTGIKINATKSMIGHCLGAAGGLEAIATVKAITTGWLHPSINQFNPEP 428 (468)
Q Consensus 352 dId~v~~h~~gt~~~D~~E~~a--l~~~f~~-~~~~~v~s~k~~~Gh~~~AsG~~~l~~~~~~l~~~~~pp~~~~~~~~~ 428 (468)
||||||+| |.+|..+ +.+.|+. ..+++++++|.++||++||+|+.++++++++|+++
T Consensus 309 dId~ie~~-------d~f~~~~l~~~~~lg~~~~~vn~~gg~~~~GHp~gAsG~~~~~~~~~~L~~~------------- 368 (392)
T 2vu1_A 309 DLDLVEAN-------EAFAAQACAVNKDLGWDPSIVNVNGGAIAIGHPIGASGARILNTLLFEMKRR------------- 368 (392)
T ss_dssp GCSEEEEC-------CSBHHHHHHHHHHHCCCGGGBSTTCCHHHHCCCGGGHHHHHHHHHHHHHHHH-------------
T ss_pred HcCEEEec-------cccHHHHHHHHHHcCCCcccCCCCccHhhhCCChhhHHHHHHHHHHHHHhcc-------------
Confidence 99999998 5566665 4667765 34689999999999999999999999999999884
Q ss_pred CCCcccccccccccCccEEEEEcccccCeeeEEEEee
Q 012221 429 SVEFDTVANKKQQHEVNVAISNSFGFGGHNSVVAFSA 465 (468)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~l~~s~g~gG~n~~~vl~~ 465 (468)
..++++++..+-||++.++||++
T Consensus 369 --------------~~~~gl~~~~~ggG~~~a~~~e~ 391 (392)
T 2vu1_A 369 --------------GARKGLATLCIGGGMGVAMCIES 391 (392)
T ss_dssp --------------TCSEEEEEEEETTTEEEEEEEEC
T ss_pred --------------CCCEEEEEEecccchheEEEEEe
Confidence 13577776544488999999986
|
| >3ss6_A Acetyl-COA acetyltransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha beta; HET: CSO; 1.70A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.7e-34 Score=284.60 Aligned_cols=271 Identities=21% Similarity=0.306 Sum_probs=213.4
Q ss_pred HHHHHHHHHHHHHHHcCCCCccccccccccceEEEeecCCCccchHHHHHHHHHhCCCCcCCcCcchhhhhhhHHHHhhh
Q 012221 126 CLRYCIVAGKKALEDADLGADISKKIDKERAGVLVGTGMGGLTVFSDGVQALIEKGHRKITPFFIPYAITNMGSALLAID 205 (468)
Q Consensus 126 ~~~l~l~a~~~AL~dAgl~~~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~ia~~ 205 (468)
...|+++++++||+|+|+ +++++| ++++|+..... .....+.+++..
T Consensus 29 ~~~L~~~A~~~Al~~agl---~~~~Id----~v~~g~~~~~~--------------------------~~~~~a~~i~~~ 75 (394)
T 3ss6_A 29 PVELAVPVLQEAVKRGGV---EPHEVD----EVILGHCIQRT--------------------------DEANTARTAALA 75 (394)
T ss_dssp HHHHHHHHHHHHHHHTTC---CGGGCC----EEEEECSSCCG--------------------------GGCSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCC---CHhHCC----EEEEEEccCCC--------------------------ccchHHHHHHHH
Confidence 467999999999999999 667777 68888753221 112246788899
Q ss_pred hCC--CCcceeecccChHHHHHHHHHHHHHHhCCCCEEEEEeeccccchhhhh---------------------------
Q 012221 206 LGF--MGPNYSISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAIIPIGLG--------------------------- 256 (468)
Q Consensus 206 lgl--~Gp~~~v~~acas~l~Al~~A~~~I~~G~~d~~lvgG~e~~~~p~~~~--------------------------- 256 (468)
+|+ ++|+++|+++|+|++.||+.|+++|++|++|.+||+|+|.+.......
T Consensus 76 lGl~~~~p~~~v~~aCss~~~al~~A~~~I~~G~~~~vlv~G~e~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (394)
T 3ss6_A 76 AGFPDTVTGYTIQRQCSSGMQAIMSAAMQIQLGVSEVVVAGGVEAMSSSPYALKQHRWGQRLQHGEIRDTVWEVLEDPIH 155 (394)
T ss_dssp TTCCTTCEEEEEECGGGHHHHHHHHHHHHHHHTSCSEEEEEEEEECTTCCEEESSTTTCCCSSCCCCEEHHHHHTBCTTT
T ss_pred cCCCCCceEEEecCcchHHHHHHHHHHHHHhCCCCCEEEEEEEhhccCCcccccccccccccCCcccccccccccccccc
Confidence 999 579999999999999999999999999999999999999754311100
Q ss_pred ----Hhhh------------------------------cccccc---------C----CCCCCCCCCC------------
Q 012221 257 ----GFVA------------------------------CRALSQ---------R----NDDPQTASRP------------ 277 (468)
Q Consensus 257 ----~~~~------------------------------~~~l~~---------~----~~~~~~~~rp------------ 277 (468)
+... .+.+.. + ..+|++.+|+
T Consensus 156 ~~~~g~~a~~~~~~~g~tre~~~~~a~~s~~~A~~a~~ag~f~~ei~p~~~~~~~~~~~~~~d~~~R~~~t~e~~~~~~p 235 (394)
T 3ss6_A 156 HIMMGETAENLVEQYEITREEQDEVALRSHTLALKAIESGYFDDQIVPITIKERRKEVVFSKDEHPRADITAEKLAGLKP 235 (394)
T ss_dssp CCBHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHTTTTTTBCCEEEECSSCEEEECSCCCCCTTCCHHHHHTCCB
T ss_pred cchHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhHhcCCccceeEeEEeccCCCceeecccccccCCCCHHHHhhCCC
Confidence 0000 000000 0 0123444553
Q ss_pred -CCC-----CCCCeeecceeEEEEecchhHHHhcCCceEEEEEEEEEcCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCC
Q 012221 278 -WDK-----DRDGFVMGEGAGVLVMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAGVSPE 351 (468)
Q Consensus 278 -fd~-----~~~G~v~gEGaaavvL~~~~~A~~~g~~i~a~i~g~~~~~d~~~~~~~~~~~~~~~~~i~~al~~Agl~~~ 351 (468)
|+. ..|+..++||++++||++++.|+++|.+++++|+|++.++ ..|.+.+.++..+++++|+++|++|+
T Consensus 236 vf~~~g~~t~~~~~~~~dGaaavvL~~~~~A~~~g~~~~a~I~g~~~~~-----~~p~~~~~~~~~a~~~al~~agl~~~ 310 (394)
T 3ss6_A 236 AFRKDGSVTAGNASGLNDGSAVLVLMSEEKAKEKGLQPLARIVGYSVAG-----VDPKIMGIGPAPAIRKGLEKVDWSLE 310 (394)
T ss_dssp SSSTTCCCBSTTBCCCEEEEEEEEEEEHHHHHHHTCCCSEEEEEEEEEE-----CCGGGGGGTHHHHHHHHHHHHTCCGG
T ss_pred ccCCCCceecCccCCcccceeEEEeccHHHHHHCCCCceEEEEEEEEec-----CCCccchHHHHHHHHHHHHHcCCCHH
Confidence 553 2567789999999999999999999999999999999986 34555566788999999999999999
Q ss_pred CcCEEEEccCCCccCCHHHHHHHHHHhcc-CCCceeeecccccCccccchhHHHHHHHHHHHhcCCcCCCCCCCCCCCCC
Q 012221 352 EVNYINAHATSTLAGDLAEINAIKKVFKN-TTGIKINATKSMIGHCLGAAGGLEAIATVKAITTGWLHPSINQFNPEPSV 430 (468)
Q Consensus 352 dId~v~~h~~gt~~~D~~E~~al~~~f~~-~~~~~v~s~k~~~Gh~~~AsG~~~l~~~~~~l~~~~~pp~~~~~~~~~~~ 430 (468)
||||||+|++++ +|..++.+.|+. ..+++++++|.++||+.||+|+.++++++++|+++
T Consensus 311 dId~ve~~d~fa-----~~~~~~~~~lg~~~~~v~~~gg~~~~GH~~gasG~~~~~~~~~~L~~~--------------- 370 (394)
T 3ss6_A 311 DADLLEINEAFA-----AQYLAVEKELDLDREKVNVNGSGVGLGHPIGCTGARITVSLIHELKRR--------------- 370 (394)
T ss_dssp GCSEEEECCSBH-----HHHHHHHHHHTCCGGGBSTTCCHHHHCCCHHHHHHHHHHHHHHHHHHH---------------
T ss_pred HcCEEEeCCchH-----HHHHHHHHHhCCCCCCCCCCcchHhhCCcHHHHHHHHHHHHHHHHHhc---------------
Confidence 999999997644 788888888875 34689999999999999999999999999999874
Q ss_pred CcccccccccccCccEEEEEcccccCeeeEEEEeec
Q 012221 431 EFDTVANKKQQHEVNVAISNSFGFGGHNSVVAFSAF 466 (468)
Q Consensus 431 ~~~~~~~~~~~~~~~~~l~~s~g~gG~n~~~vl~~~ 466 (468)
+.++++++..+-||...++||++.
T Consensus 371 ------------~~~~gl~~~c~ggG~g~a~~~e~~ 394 (394)
T 3ss6_A 371 ------------GLEKGIASLCVGGGIGVALFIEAL 394 (394)
T ss_dssp ------------TCCEEEEEEEETTTEEEEEEEEEC
T ss_pred ------------CCCEEEEEEccCcCceeEEEEEcC
Confidence 235788888888899999999873
|
| >2iik_A 3-ketoacyl-COA thiolase, peroxisomal; fatty acid metabolism, structural genomics, structural genom consortium, SGC, transferase; 2.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-34 Score=288.73 Aligned_cols=270 Identities=18% Similarity=0.233 Sum_probs=211.3
Q ss_pred HHHHHHHHHHHHHHHcCCCCccccccccccceEEEeecCCCccchHHHHHHHHHhCCCCcCCcCcchhhhhhhHHHHhhh
Q 012221 126 CLRYCIVAGKKALEDADLGADISKKIDKERAGVLVGTGMGGLTVFSDGVQALIEKGHRKITPFFIPYAITNMGSALLAID 205 (468)
Q Consensus 126 ~~~l~l~a~~~AL~dAgl~~~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~ia~~ 205 (468)
..+|+++++++||+|||+ +++++| +|++|+..++.. ....+..++..
T Consensus 55 ~~~L~~~Aa~~AL~dAgl---~~~~id----~v~~g~~~~~~~--------------------------~~~~a~~~a~~ 101 (418)
T 2iik_A 55 PDELLSAVMTAVLKDVNL---RPEQLG----DICVGNVLQPGA--------------------------GAIMARIAQFL 101 (418)
T ss_dssp HHHHHHHHHHHHHHHHTC---CGGGCC----CEEEECSSSBGG--------------------------GHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCC---CHHHCC----EEEEEecCCccc--------------------------cccHHHHHHHH
Confidence 578999999999999999 566676 689987643221 12345667788
Q ss_pred hCC--CCcceeecccChHHHHHHHHHHHHHHhCCCCEEEEEeeccccc-hh--------hh------------hHh---h
Q 012221 206 LGF--MGPNYSISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAII-PI--------GL------------GGF---V 259 (468)
Q Consensus 206 lgl--~Gp~~~v~~acas~l~Al~~A~~~I~~G~~d~~lvgG~e~~~~-p~--------~~------------~~~---~ 259 (468)
+|+ ++|+++|+++|+|++.||+.|+++|++|++|++||+|+|.+.. |. .+ .++ .
T Consensus 102 lGl~~~~p~~~v~~aCss~~~Al~~A~~~I~~G~~d~vLv~G~e~~s~~p~~~~~~~~~~~~~~~~~~~~~~~~g~~a~~ 181 (418)
T 2iik_A 102 SDIPETVPLSTVNRQCSSGLQAVASIAGGIRNGSYDIGMACGVESMSLADRGNPGNITSRLMEKEKARDCLIPMGITSEN 181 (418)
T ss_dssp TTCCTTSCEEEEECGGGHHHHHHHHHHHHHHTTSCSEEEEEEEEETTTCC-----CCCTTGGGCHHHHGGGSCHHHHHHH
T ss_pred cCCCCCceEEEeCCCCHHHHHHHHHHHHHHHCCCCCEEEEeccccCccCCccCCcccchhhhcccccccccccHHHHHHH
Confidence 999 7899999999999999999999999999999999999997543 11 00 000 0
Q ss_pred -------------------------h--ccccccC------------------CCCCCCCCCC-------------CCCC
Q 012221 260 -------------------------A--CRALSQR------------------NDDPQTASRP-------------WDKD 281 (468)
Q Consensus 260 -------------------------~--~~~l~~~------------------~~~~~~~~rp-------------fd~~ 281 (468)
. .+.+... ..++++.||| ||.+
T Consensus 182 ~a~~~gitre~~~~~a~~s~~~A~~a~~~g~~~~ei~pv~~~~~~~~~~~~~~~~~~d~~~rp~~t~e~l~~~~~vfd~~ 261 (418)
T 2iik_A 182 VAERFGISREKQDTFALASQQKAARAQSKGCFQAEIVPVTTTVHDDKGTKRSITVTQDEGIRPSTTMEGLAKLKPAFKKD 261 (418)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTTTTTBCCEEEEEECTTSCEEEEEECSCTTCCTTCCHHHHHHCCCSSSTT
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHhChhcCccccceeeeeeccccccCcccceeeecccCcCCCCCHHHHhhCCCcccCC
Confidence 0 0111100 0112567888 9987
Q ss_pred C-----CCeeecceeEEEEecchhHHHhcCCceEEEEEEEEEcCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCcCEE
Q 012221 282 R-----DGFVMGEGAGVLVMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAGVSPEEVNYI 356 (468)
Q Consensus 282 ~-----~G~v~gEGaaavvL~~~~~A~~~g~~i~a~i~g~~~~~d~~~~~~~~~~~~~~~~~i~~al~~Agl~~~dId~v 356 (468)
+ ||+.++|||+++||++++.|+++|.+|+++|+|++.+.. .|+..+.+...+++++|++||++++|||||
T Consensus 262 ~~~t~~d~~~~~DGAaavvL~s~~~A~~~g~~~~a~i~g~~~~~~-----~p~~~~~~~~~a~~~al~~Agl~~~dId~v 336 (418)
T 2iik_A 262 GSTTAGNSSQVSDGAAAILLARRSKAEELGLPILGVLRSYAVVGV-----PPDIMGIGPAYAIPVALQKAGLTVSDVDIF 336 (418)
T ss_dssp CCCCSTTBCCCEEEEEEEEEEEHHHHHHHTCCCCEEEEEEEEEEC-----CGGGGGGHHHHHHHHHHHHHTCCGGGEEEE
T ss_pred CceeeccccCCCCCceEEEEecHHHHHhcCCCceEEEEEEEeccC-----CchhcchhHHHHHHHHHHHcCCCHHHCCee
Confidence 5 999999999999999999999999999999999998762 345556678889999999999999999999
Q ss_pred EEccCCCccCCHHHHHHHHHHhccCCCceeeecc--cccCccccchhHHHHHHHHHHHhcCCcCCCCCCCCCCCCCCccc
Q 012221 357 NAHATSTLAGDLAEINAIKKVFKNTTGIKINATK--SMIGHCLGAAGGLEAIATVKAITTGWLHPSINQFNPEPSVEFDT 434 (468)
Q Consensus 357 ~~h~~gt~~~D~~E~~al~~~f~~~~~~~v~s~k--~~~Gh~~~AsG~~~l~~~~~~l~~~~~pp~~~~~~~~~~~~~~~ 434 (468)
|+|++++ ..|..|+++|.. . ..+|+..+ .++||++||+|+.++++++++|+++
T Consensus 337 E~h~af~-~~~~~~~~~lg~--~---~~~vN~~GG~~a~GHp~GAsG~~~~~~~~~~L~~~------------------- 391 (418)
T 2iik_A 337 EINEAFA-SQAAYCVEKLRL--P---PEKVNPLGGAVALGHPLGCTGARQVITLLNELKRR------------------- 391 (418)
T ss_dssp EECCSBH-HHHHHHHHHHTC--C---GGGBCTTCCHHHHCCCHHHHHHHHHHHHHHHHHHH-------------------
T ss_pred eeeccch-HHHHHHHHHcCC--C---ccccCCCCCeeeecCChhhhHHHHHHHHHHHHHhc-------------------
Confidence 9998766 568888887752 1 23455444 6799999999999999999999873
Q ss_pred ccccccccCcc-EEEEEcccccCeeeEEEEeec
Q 012221 435 VANKKQQHEVN-VAISNSFGFGGHNSVVAFSAF 466 (468)
Q Consensus 435 ~~~~~~~~~~~-~~l~~s~g~gG~n~~~vl~~~ 466 (468)
..+ +++++..+.||...++||+++
T Consensus 392 --------~~~~~gl~~~c~ggG~g~a~~~e~~ 416 (418)
T 2iik_A 392 --------GKRAYGVVSMCIGTGMGAAAVFEYP 416 (418)
T ss_dssp --------TSCEEEEEEEEETTTEEEEEEEEEC
T ss_pred --------CCCeeeEEEEeeccchhheEEEecc
Confidence 013 677787788899999999975
|
| >1afw_A 3-ketoacetyl-COA thiolase; fatty acid metabolism; 1.80A {Saccharomyces cerevisiae} SCOP: c.95.1.1 c.95.1.1 PDB: 1pxt_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-34 Score=286.83 Aligned_cols=246 Identities=16% Similarity=0.211 Sum_probs=191.9
Q ss_pred HHHHHHHHHHHHHHHcC----CCCccccccccccceEEEeecCCCccchHHHHHHHHHhCCCCcCCcCcchhhhhhhHHH
Q 012221 126 CLRYCIVAGKKALEDAD----LGADISKKIDKERAGVLVGTGMGGLTVFSDGVQALIEKGHRKITPFFIPYAITNMGSAL 201 (468)
Q Consensus 126 ~~~l~l~a~~~AL~dAg----l~~~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~ 201 (468)
..+|+++++++||+|+| + +++++| +|++|+..++. ..+..+.+
T Consensus 35 ~~~La~~Aa~~Al~~Ag~~~~l---~~~~id----~v~~g~~~~~~--------------------------~~~~~a~~ 81 (393)
T 1afw_A 35 TDYLLYNFLNEFIGRFPEPLRA---DLNLIE----EVACGNVLNVG--------------------------AGATEHRA 81 (393)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHT---CGGGCC----CEEEECSSSBG--------------------------GGHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCCCC---CHHHCC----EEEEEecCCCC--------------------------CCChHHHH
Confidence 46799999999999999 9 556666 68998764321 12446889
Q ss_pred HhhhhCC--CCcceeecccChHHHHHHHHHHHHHHhCCCCEEEEEeeccccc-hhh-----------h--hHh-----hh
Q 012221 202 LAIDLGF--MGPNYSISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAII-PIG-----------L--GGF-----VA 260 (468)
Q Consensus 202 ia~~lgl--~Gp~~~v~~acas~l~Al~~A~~~I~~G~~d~~lvgG~e~~~~-p~~-----------~--~~~-----~~ 260 (468)
++..+|+ ++|+++|+++|+|++.||++|+++|++|++|++||+|+|.+.. |.. + .++ ..
T Consensus 82 va~~lGl~~~~p~~~v~~aCasg~~Al~~A~~~I~~G~~d~vLv~G~e~~s~~p~~~~~~~~~~~~~~~~~g~~~~~~~~ 161 (393)
T 1afw_A 82 ACLASGIPYSTPFVALNRQCSSGLTAVNDIANKIKVGQIDIGLALGVESMTNNYKNVNPLGMISSEELQKNREAKKCLIP 161 (393)
T ss_dssp HHHHTTCCTTSCEEEEECGGGHHHHHHHHHHHHHHTTSCSEEEEEEEEEHHHHGGGSCTTCSCCCHHHHHCTTGGGGGSC
T ss_pred HHHHcCCCCCceEEEEcCcCHHHHHHHHHHHHHHHCCCCCEEEEEEEEecCCCcccccccccccchhhhhcccccccchh
Confidence 9999999 7899999999999999999999999999999999999997432 221 0 011 00
Q ss_pred cccccc-----C--------------------C--------------------CCCCC------------CCCC-CCCCC
Q 012221 261 CRALSQ-----R--------------------N--------------------DDPQT------------ASRP-WDKDR 282 (468)
Q Consensus 261 ~~~l~~-----~--------------------~--------------------~~~~~------------~~rp-fd~~~ 282 (468)
++.+++ . + .++++ .+|| ||.++
T Consensus 162 ~~~~a~~~~~~~g~sre~~~~~a~~s~~~A~~~~~ag~f~~ei~P~~~~~~~~~~~d~~~r~~~t~e~~~~~rpvf~~~~ 241 (393)
T 1afw_A 162 MGITNENVAANFKISRKDQDEFAANSYQKAYKAKNEGLFEDEILPIKLPDGSICQSDEGPRPNVTAESLSSIRPAFIKDR 241 (393)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTSSTTTBCCEECTTSCEECSCSSCCSCCCHHHHHHCCBSCC---
T ss_pred HHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhHhcCCccceeeeeeccCCceeccccccCCCCCHHHHhcCCCcccCCC
Confidence 111100 0 0 01122 2456 87554
Q ss_pred CCee-------ecceeEEEEecchhHHHhcCCceEEEEEEEEEcCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCcCE
Q 012221 283 DGFV-------MGEGAGVLVMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAGVSPEEVNY 355 (468)
Q Consensus 283 ~G~v-------~gEGaaavvL~~~~~A~~~g~~i~a~i~g~~~~~d~~~~~~~~~~~~~~~~~i~~al~~Agl~~~dId~ 355 (468)
|++ ++||++++||+++++|+++|.+++++|+|++.+++. |+..+.+...+++++|+++|++|+||||
T Consensus 242 -G~vt~~~~~~~~dGAaavvL~s~~~A~~~g~~~~a~i~g~~~~~~~-----p~~~~~~~~~a~~~al~~Agl~~~dId~ 315 (393)
T 1afw_A 242 -GTTTAGNASQVSDGVAGVLLARRSVANQLNLPVLGRYIDFQTVGVP-----PEIMGVGPAYAIPKVLEATGLQVQDIDI 315 (393)
T ss_dssp -CCCBTTTBCCBEEEEEEEEEEEHHHHHHTTCCCCEEEEEEEEEECC-----GGGGGGHHHHHHHHHHHHHTCCGGGCSE
T ss_pred -CCeechhcCcccchhheeeEecHHHHHHcCCCccEEEEEEEEeccC-----hhhcchhHHHHHHHHHHHcCCCHHHCCE
Confidence 776 899999999999999999999999999999999863 3445667889999999999999999999
Q ss_pred EEEccCCCccCCHHHHHHHHHHhcc-CCCceeeecccccCccccchhHHHHHHHHHHHhcC
Q 012221 356 INAHATSTLAGDLAEINAIKKVFKN-TTGIKINATKSMIGHCLGAAGGLEAIATVKAITTG 415 (468)
Q Consensus 356 v~~h~~gt~~~D~~E~~al~~~f~~-~~~~~v~s~k~~~Gh~~~AsG~~~l~~~~~~l~~~ 415 (468)
||+|+++|. .|+..++. |+. ..++++++++..+||++||+|+.++++++++|+++
T Consensus 316 ve~h~~ft~----~~l~~~~~-lg~~~~~vn~~Gg~~a~GHp~gAsG~~~~~~~~~~L~~~ 371 (393)
T 1afw_A 316 FEINEAFAA----QALYCIHK-LGIDLNKVNPRGGAIALGHPLGCTGARQVATILRELKKD 371 (393)
T ss_dssp EEECCSBHH----HHHHHHHH-HTCCGGGBSTTCCHHHHCBCTTTHHHHHHHHHHHHSCTT
T ss_pred EEEeccCHH----HHHHHHHH-hCCCCcCcCCCCChhhcCCchhhHHHHHHHHHHHHHhhc
Confidence 999999995 57666654 443 34688889999999999999999999999999885
|
| >3goa_A 3-ketoacyl-COA thiolase; metabolism, fatty acid, phospholipid, IDP01071, acyltransferase, cytoplasm, fatty acid metabolism; 1.70A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-33 Score=282.31 Aligned_cols=273 Identities=18% Similarity=0.183 Sum_probs=206.0
Q ss_pred HHHHHHHHHHHHHHHHc-CCCCccccccccccceEEEeecCCCccchHHHHHHHHHhCCCCcCCcCcchhhhhhhHHHHh
Q 012221 125 DCLRYCIVAGKKALEDA-DLGADISKKIDKERAGVLVGTGMGGLTVFSDGVQALIEKGHRKITPFFIPYAITNMGSALLA 203 (468)
Q Consensus 125 ~~~~l~l~a~~~AL~dA-gl~~~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~ia 203 (468)
+..+|+++++++||+|+ |+ +++++| ++++|+...... .....+.+++
T Consensus 26 ~~~~L~~~a~~~Al~~a~gi---~~~~Id----~v~~g~~~~~~~-------------------------~~~~~a~~~~ 73 (387)
T 3goa_A 26 RAEDLSAHLMRSLLARNPSL---TAATLD----DIYWGCVQQTLE-------------------------QGFNIARNAA 73 (387)
T ss_dssp CHHHHHHHHHHHHHHHCTTS---CGGGCC----EEEEECSCCSBT-------------------------TTTTHHHHHH
T ss_pred CHHHHHHHHHHHHHHhccCC---CHHHcC----EEEEEcccCCcc-------------------------cccHHHHHHH
Confidence 35789999999999999 99 667777 689987543211 0122467888
Q ss_pred hhhCC--CCcceeecccChHHHHHHHHHHHHHHhCCCCEEEEEeeccccchhhh--------------------------
Q 012221 204 IDLGF--MGPNYSISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAIIPIGL-------------------------- 255 (468)
Q Consensus 204 ~~lgl--~Gp~~~v~~acas~l~Al~~A~~~I~~G~~d~~lvgG~e~~~~p~~~-------------------------- 255 (468)
..+|+ ++|+++|+++|+|++.||++|+++|++|++|.+||+|+|.+......
T Consensus 74 ~~~Gl~~~~p~~~v~~aCss~l~Al~~A~~~I~sG~~d~vLv~G~e~~s~~~~~~~~~~~~~~~~~~~~~~~~~g~~a~~ 153 (387)
T 3goa_A 74 LLAEIPHSVPAVTVNRLCGSSMQALHDAARMIMTGDAQVCLVGGVEHMGHVPMSHGVDFHPGLSRNVAKAAGMMGLTAEM 153 (387)
T ss_dssp HHTTCCTTSCCEEEECGGGHHHHHHHHHHHHHHTTSCSEEEEEEEECTTTSCTTTTBCCCTTCC-------CCCHHHHHH
T ss_pred HHcCCCCCCcEeEecCcchHHHHHHHHHHHHHhCCCCCEEEEEEEecCCCCccccccCcCcccccccccccccHHHHHHH
Confidence 88999 57999999999999999999999999999999999999975432110
Q ss_pred ------------hHhhh-----------ccccccC--------------CCCCCCCCCC-------------CCC-----
Q 012221 256 ------------GGFVA-----------CRALSQR--------------NDDPQTASRP-------------WDK----- 280 (468)
Q Consensus 256 ------------~~~~~-----------~~~l~~~--------------~~~~~~~~rp-------------fd~----- 280 (468)
..+.. .+.+... ..++++.+|| |+.
T Consensus 154 ~~~~~g~tre~~~~~a~~s~~~A~~a~~~g~f~~ei~p~~~~~~~~~~~~~~~d~~~r~~~t~e~l~~~~p~f~~~~g~~ 233 (387)
T 3goa_A 154 LSRLHGISREMQDQFAARSHARAWAATQSGAFKTEIIPTGGHDADGVLKQFNYDEVIRPETTVEALSTLRPAFDPVSGTV 233 (387)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTTTTTBCCEEEECTTSCEEEECSCTTCCTTCCHHHHTTSCCSSCTTTCCC
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHhHhcCCcccceeeeeeccccCcccccccccccCCCCCHHHHhcCCCcccCCCCce
Confidence 00000 0011000 0012333333 553
Q ss_pred -CCCCeeecceeEEEEecchhHHHhcCCceEEEEEEEEEcCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCcCEEEEc
Q 012221 281 -DRDGFVMGEGAGVLVMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAGVSPEEVNYINAH 359 (468)
Q Consensus 281 -~~~G~v~gEGaaavvL~~~~~A~~~g~~i~a~i~g~~~~~d~~~~~~~~~~~~~~~~~i~~al~~Agl~~~dId~v~~h 359 (468)
..|+..++||++++||++++.|+++|++++++|+|++.+++.. .+.+.+...+++++|+++|++|+||||||+|
T Consensus 234 t~~~~~~~~dGaaavvL~s~~~A~~~g~~~~a~i~g~~~~~~~~-----~~~~~~~~~a~~~al~~agl~~~did~ve~h 308 (387)
T 3goa_A 234 TAGTSSALSDGAAAMLVMSESRARELGLKPRARIRSMAVVGCDP-----SIMGYGPVPASKLALKKAGLSASDIDVFEMN 308 (387)
T ss_dssp CGGGBCCCEEEEEEEEEEEHHHHHHTTCCCCEEEEEEEEEECCT-----TSTTCTHHHHHHHHHHHHTCCGGGCSEEEEC
T ss_pred ecccCCCcCccEEEEEEecHHHHHHcCCCccEEEEEEEEcCCCC-----CcchHHHHHHHHHHHHHcCCCHHHcCEEEEe
Confidence 2567789999999999999999999999999999999998743 3334456889999999999999999999999
Q ss_pred cCCCccCCHHHHHHHHHHhcc----CCCceeeecccccCccccchhHHHHHHHHHHHhcCCcCCCCCCCCCCCCCCcccc
Q 012221 360 ATSTLAGDLAEINAIKKVFKN----TTGIKINATKSMIGHCLGAAGGLEAIATVKAITTGWLHPSINQFNPEPSVEFDTV 435 (468)
Q Consensus 360 ~~gt~~~D~~E~~al~~~f~~----~~~~~v~s~k~~~Gh~~~AsG~~~l~~~~~~l~~~~~pp~~~~~~~~~~~~~~~~ 435 (468)
++++. .+...++. ++- ..+++++++|..+||++||+|+.++++++++|+++
T Consensus 309 ~~f~~----~~~~~~~~-lg~~~~~~~~vn~~gg~~~~GH~~gasG~~~~~~~~~~L~~~-------------------- 363 (387)
T 3goa_A 309 EAFAA----QILPCIKD-LGLMEQIDEKINLNGGAIALGHPLGCSGARISTTLINLMERK-------------------- 363 (387)
T ss_dssp CSBHH----HHHHHHHH-TTCGGGHHHHBSTTCCHHHHCCCHHHHHHHHHHHHHHHHHHT--------------------
T ss_pred CcchH----HHHHHHHH-hCCCcCCCccCCCCCchhcccCCHHHHHHHHHHHHHHHHHhc--------------------
Confidence 99885 34443333 332 24578999999999999999999999999999973
Q ss_pred cccccccCccEEEEEcccccCeeeEEEEeec
Q 012221 436 ANKKQQHEVNVAISNSFGFGGHNSVVAFSAF 466 (468)
Q Consensus 436 ~~~~~~~~~~~~l~~s~g~gG~n~~~vl~~~ 466 (468)
..++++++..+-||+..++||++.
T Consensus 364 -------~~~~gl~~~c~ggG~g~a~~~e~~ 387 (387)
T 3goa_A 364 -------DAQFGLATMCIGLGQGIATVFERV 387 (387)
T ss_dssp -------TCSEEEEEEEETTTEEEEEEEECC
T ss_pred -------CCCEEEEEeccCcCceEEEEEEeC
Confidence 235777766666789999999863
|
| >2ib8_A Acetyl-COA acetyltransferase; thiolase fold, potassium ION, chloride, beta-alpha-beta-ALPH alpha-beta-BETA topology; HET: MES; 1.85A {Homo sapiens} PDB: 2ib7_A* 2ib9_A* 2ibu_A* 2ibw_A* 2iby_A* 2f2s_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-34 Score=286.47 Aligned_cols=243 Identities=18% Similarity=0.277 Sum_probs=189.2
Q ss_pred HHHHHHHHHHHHHHHcCCCCccccccccccceEEEeecCCCccchHHHHHHHHHhCCCCcCCcCcchhhhhhhHHHHhhh
Q 012221 126 CLRYCIVAGKKALEDADLGADISKKIDKERAGVLVGTGMGGLTVFSDGVQALIEKGHRKITPFFIPYAITNMGSALLAID 205 (468)
Q Consensus 126 ~~~l~l~a~~~AL~dAgl~~~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~ia~~ 205 (468)
..+|+++++++||+|+|+ ++++++ ++++|+..+.. .....+.++++.
T Consensus 32 ~~~l~~~a~~~Al~dAgl---~~~~id----~~~~g~~~~~~--------------------------~~~~~a~~va~~ 78 (395)
T 2ib8_A 32 ATKLGSIAIQGAIEKAGI---PKEEVK----EAYMGNVLQGG--------------------------EGQAPTRQAVLG 78 (395)
T ss_dssp HHHHHHHHHHHHHHHHTC---CGGGCC----EEEEECSCCTT--------------------------SCSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCC---CHHHCC----EEEEEeccCCC--------------------------CCchHHHHHHHH
Confidence 467999999999999999 556666 57777653211 012247889999
Q ss_pred hCC--CCcceeecccChHHHHHHHHHHHHHHhCCCCEEEEEeeccccc-hhh------------------hhH-------
Q 012221 206 LGF--MGPNYSISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAII-PIG------------------LGG------- 257 (468)
Q Consensus 206 lgl--~Gp~~~v~~acas~l~Al~~A~~~I~~G~~d~~lvgG~e~~~~-p~~------------------~~~------- 257 (468)
+|+ +||+++|+++|+|++.||++|+++|++|++|++||||+|.... |.. +..
T Consensus 79 lgl~~~~p~~~v~~aCaS~~~Al~~A~~~I~~G~~d~vlvgG~e~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (395)
T 2ib8_A 79 AGLPISTPCTTINKVCASGMKAIMMASQSLMCGHQDVMVAGGMESMSNVPYVMNRGSTPYGGVKLEDLIVKDGLTDVYNK 158 (395)
T ss_dssp TTCCTTCCEEEEECGGGHHHHHHHHHHHHHHTTSCSEEEEEEEEEGGGCCEEECSSBCCTTCEEEEEHHHHHTTEETTTT
T ss_pred cCCCCCceEEEecccccHHHHHHHHHHHHHHCCCCCEEEEEeeecccCCccccccccccccccccccccccccccccccc
Confidence 999 8999999999999999999999999999999999999997433 110 000
Q ss_pred ----------hhhccccccC----------------------C-----------------CCCCCCCCC--CCC------
Q 012221 258 ----------FVACRALSQR----------------------N-----------------DDPQTASRP--WDK------ 280 (468)
Q Consensus 258 ----------~~~~~~l~~~----------------------~-----------------~~~~~~~rp--fd~------ 280 (468)
....+ +++. . .+.++.+|+ ||.
T Consensus 159 ~~m~~~a~~~~~~~g-~sre~~~~~A~~s~~~a~~a~~~~~f~~ei~p~~~~~~~~p~~~~~~D~~~r~~~~~~l~~l~~ 237 (395)
T 2ib8_A 159 IHMGSCAENTAKKLN-IARNEQDAYAINSYTRSKAAWEAGKFGNEVIPVTVTVKGQPDVVVKEDEEYKRVDFSKVPKLKT 237 (395)
T ss_dssp EEHHHHHHHHHHHHT-CCHHHHHHHHHHHHHHHHHHHHTTTTTTTBCCEEECCTTSCCEEECSCSGGGSCCTTTGGGSCC
T ss_pred chHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHhcccccCcccceeeeeecccCCcceeeccccccccCCHHHHhcCCc
Confidence 01110 0000 0 000111222 554
Q ss_pred ---CCCCee-------ecceeEEEEecchhHHHhcCCceEEEEEEEEEcCCCCCCCCCCCChHHHHHHHHHHHHHcCCCC
Q 012221 281 ---DRDGFV-------MGEGAGVLVMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAGVSP 350 (468)
Q Consensus 281 ---~~~G~v-------~gEGaaavvL~~~~~A~~~g~~i~a~i~g~~~~~d~~~~~~~~~~~~~~~~~i~~al~~Agl~~ 350 (468)
+++|++ ++||++++||++++.|+++|.+++++|+|++.++ +.|...+.++..+++++|+++|++|
T Consensus 238 ~f~~~~g~vt~~~~~~~~dGAaavvL~s~~~A~~~g~~~~a~I~g~~~~~-----~~p~~~~~~~~~a~~~al~~Agl~~ 312 (395)
T 2ib8_A 238 VFQKENGTVTAANASTLNDGAAALVLMTADAAKRLNVTPLARIVAFADAA-----VEPIDFPIAPVYAASMVLKDVGLKK 312 (395)
T ss_dssp TTCSSSCCCCTTTBCCCEEEEEEEEEEEHHHHHHTTCCCCEEEEEEEEEE-----CCGGGGGGHHHHHHHHHHHHHTCCG
T ss_pred cccCCCCCcccccCCccccceeEEEEecHHHHHhcCCCccEEEEEEEEec-----cChhhccccHHHHHHHHHHHcCCCH
Confidence 568999 9999999999999999999999999999999875 3444456678899999999999999
Q ss_pred CCcCEEEEccCCCccCCHHHHHHHHHH--hcc-CCCceeeecccccCccccchhHHHHHHHHHHHhc
Q 012221 351 EEVNYINAHATSTLAGDLAEINAIKKV--FKN-TTGIKINATKSMIGHCLGAAGGLEAIATVKAITT 414 (468)
Q Consensus 351 ~dId~v~~h~~gt~~~D~~E~~al~~~--f~~-~~~~~v~s~k~~~Gh~~~AsG~~~l~~~~~~l~~ 414 (468)
+||||||.| |.+|..+|..+ |+. ..+++++++|.++||++||+|+.++++++++|++
T Consensus 313 ~dId~ie~~-------D~f~~~~l~~~e~lg~~~~~vn~~gg~~~~GHp~gAsG~~~~~~~~~~L~~ 372 (395)
T 2ib8_A 313 EDIAMWEVN-------EAFSLVVLANIKMLEIDPQKVNINGGAVSLGHPIGMSGARIVGHLTHALKQ 372 (395)
T ss_dssp GGEEEEEEC-------CSBHHHHHHHHHHHTCCGGGBSTTCCHHHHCCCHHHHHHHHHHHHHHHSCT
T ss_pred HHcCEEEEc-------cccHHHHHHHHHHcCCCccccCCCcchhhcCCChhHHHHHHHHHHHHHHhh
Confidence 999999976 77777877777 664 3468999999999999999999999999999975
|
| >4dd5_A Acetyl-COA acetyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, thiolase; 1.25A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-33 Score=281.06 Aligned_cols=270 Identities=20% Similarity=0.301 Sum_probs=212.6
Q ss_pred HHHHHHHHHHHHHHHcCCCCccccccccccceEEEeecCCCccchHHHHHHHHHhCCCCcCCcCcchhhhhhhHHHHhhh
Q 012221 126 CLRYCIVAGKKALEDADLGADISKKIDKERAGVLVGTGMGGLTVFSDGVQALIEKGHRKITPFFIPYAITNMGSALLAID 205 (468)
Q Consensus 126 ~~~l~l~a~~~AL~dAgl~~~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~ia~~ 205 (468)
...|+++++++||+|+|+ +++++| ++++|+...... ....+.+++..
T Consensus 31 ~~~L~~~A~~~AL~~agl---~~~dId----~vi~g~~~~~~~--------------------------~~~~a~~v~~~ 77 (396)
T 4dd5_A 31 AVELGVTAAKEAIKRANI---TPDMID----ESLLGGVLTAGL--------------------------GQNIARQIALG 77 (396)
T ss_dssp HHHHHHHHHHHHHHHTTC---CGGGCC----EEEEECSCCTTS--------------------------CSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCC---CHHHCC----EEEEEeecCCCC--------------------------CchHHHHHHHH
Confidence 467999999999999999 667777 788887542211 12247789999
Q ss_pred hCC--CCcceeecccChHHHHHHHHHHHHHHhCCCCEEEEEeeccccchhhhh---------------------H-----
Q 012221 206 LGF--MGPNYSISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAIIPIGLG---------------------G----- 257 (468)
Q Consensus 206 lgl--~Gp~~~v~~acas~l~Al~~A~~~I~~G~~d~~lvgG~e~~~~p~~~~---------------------~----- 257 (468)
+|+ ++|+++|+++|+|++.||+.|+++|++|++|.+||+|+|.+....... +
T Consensus 78 lGl~~~~p~~~v~~aCss~~~al~~A~~~I~~G~~~~vLv~g~e~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (396)
T 4dd5_A 78 AGIPVEKPAMTINIVCGSGLRSVSMASQLIALGDADIMLVGGAENMSMSPYLVPSARYGARMGDAAFVDSMIKDGLSDIF 157 (396)
T ss_dssp TTCCTTSCEEEECCGGGHHHHHHHHHHHHHHHTSCSEEEEEEEEESTTCCEECTTTTTCCCSSCCCCEEHHHHHTSEETT
T ss_pred cCCCCCceEEEeccccHHHHHHHHHHHHHHhcCCCCEEEEEEEecccCCcccccccccccccCcccccchhhhccccccc
Confidence 999 579999999999999999999999999999999999999754311000 0
Q ss_pred -------------------------hh---h--------ccccccC-------------CCCCCCCCCC-----------
Q 012221 258 -------------------------FV---A--------CRALSQR-------------NDDPQTASRP----------- 277 (468)
Q Consensus 258 -------------------------~~---~--------~~~l~~~-------------~~~~~~~~rp----------- 277 (468)
+. . .+.+... ..+++..+|+
T Consensus 158 ~~~~~~~~a~~~~~~~g~tre~~~~~a~~s~~~a~~a~~~g~f~~ei~pv~~~~~~~~~~~~~d~~~r~~~t~e~l~~~~ 237 (396)
T 4dd5_A 158 NNYHMGITAENIAEQWNITREEQDELALASQNKAEKAQAEGKFDEEIVPVVIKGRKGDTVVDKDEYIKPGTTMEKLAKLR 237 (396)
T ss_dssp TTEEHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHTTTTTTTBCCEEEC----CEEECSCSCCCTTCCHHHHHHCC
T ss_pred ccchHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhHHcCCcccceeeeeeccCCCceeecCcccccCCCCHHHHhhCC
Confidence 00 0 0000000 0012233332
Q ss_pred --CCC-----CCCCeeecceeEEEEecchhHHHhcCCceEEEEEEEEEcCCCCCCCCCCCChHHHHHHHHHHHHHcCCCC
Q 012221 278 --WDK-----DRDGFVMGEGAGVLVMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAGVSP 350 (468)
Q Consensus 278 --fd~-----~~~G~v~gEGaaavvL~~~~~A~~~g~~i~a~i~g~~~~~d~~~~~~~~~~~~~~~~~i~~al~~Agl~~ 350 (468)
|+. ..|+..++||++++||++++.|+++|++++++|+|++.+++ .|.+.+.++..+++++|+++|++|
T Consensus 238 ~v~~p~g~~t~~~~~~~~dGaaavvL~s~~~A~~~g~~~~a~I~g~~~~~~-----~p~~~~~~~~~a~~~al~~Agl~~ 312 (396)
T 4dd5_A 238 PAFKKDGTVTAGNASGINDGAAMLVVMAKEKAEELGIEPLATIVSYGTAGV-----DPKIMGYGPVPATKKALEAANMTI 312 (396)
T ss_dssp BSSSTTCSCBTTTBCCCEEEEEEEEEEEHHHHHHHTCCCSEEEEEEEEEEC-----CGGGGGGTHHHHHHHHHHHHTCCG
T ss_pred CccCCCCCeecCCCCCcCcceeEEEEeeHHHHHHCCCCceEEEEEEEEecC-----CCCcccHHHHHHHHHHHHHcCCCH
Confidence 332 24667789999999999999999999999999999999874 455566678999999999999999
Q ss_pred CCcCEEEEccCCCccCCHHHHHHHHHHhcc-CCCceeeecccccCccccchhHHHHHHHHHHHhcCCcCCCCCCCCCCCC
Q 012221 351 EEVNYINAHATSTLAGDLAEINAIKKVFKN-TTGIKINATKSMIGHCLGAAGGLEAIATVKAITTGWLHPSINQFNPEPS 429 (468)
Q Consensus 351 ~dId~v~~h~~gt~~~D~~E~~al~~~f~~-~~~~~v~s~k~~~Gh~~~AsG~~~l~~~~~~l~~~~~pp~~~~~~~~~~ 429 (468)
+||||||+|++++ +|..++.+.|+. ..+++++++|+++||++||+|+.++++++++|+++
T Consensus 313 ~dId~ve~~d~f~-----~~~~~~~~~lg~~~~~~n~~gg~~~~GH~~gasG~~~~~~~~~~L~~~-------------- 373 (396)
T 4dd5_A 313 EDIDLVEANEAFA-----AQSVAVIRDLNIDMNKVNVNGGAIAIGHPIGCSGARILTTLLYEMKRR-------------- 373 (396)
T ss_dssp GGCSEEEECCSBH-----HHHHHHHHHHTCCTTSBSTTCCHHHHCCCHHHHHHHHHHHHHHHHHHH--------------
T ss_pred HHcCEEEecChHH-----HHHHHHHHHhCCCCCccCCCCchhhccCcHHHHHHHHHHHHHHHHHhc--------------
Confidence 9999999997754 777888888875 45789999999999999999999999999999984
Q ss_pred CCcccccccccccCccEEEEEcccccCeeeEEEEee
Q 012221 430 VEFDTVANKKQQHEVNVAISNSFGFGGHNSVVAFSA 465 (468)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~l~~s~g~gG~n~~~vl~~ 465 (468)
..++++++..+.||+..++||++
T Consensus 374 -------------~~~~gl~~~c~ggG~g~a~~~e~ 396 (396)
T 4dd5_A 374 -------------DAKTGLATLCIGGGMGTTLIVKR 396 (396)
T ss_dssp -------------TCSEEEEEEEETTTEEEEEEEEC
T ss_pred -------------CCCeEEEEEcccCCceeEEEEeC
Confidence 24689999999999999999985
|
| >4e1l_A Acetoacetyl-COA thiolase 2; 3-layer(ABA) sandwich, transferase; 2.00A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-32 Score=271.75 Aligned_cols=270 Identities=22% Similarity=0.325 Sum_probs=210.2
Q ss_pred HHHHHHHHHHHHHHHcCCCCccccccccccceEEEeecCCCccchHHHHHHHHHhCCCCcCCcCcchhhhhhhHHHHhhh
Q 012221 126 CLRYCIVAGKKALEDADLGADISKKIDKERAGVLVGTGMGGLTVFSDGVQALIEKGHRKITPFFIPYAITNMGSALLAID 205 (468)
Q Consensus 126 ~~~l~l~a~~~AL~dAgl~~~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~ia~~ 205 (468)
...|+++++++||+|+|+ +++++| ++++|+..... .....+.+++..
T Consensus 29 ~~~L~~~a~~~Al~~agi---~~~~Id----~v~~g~~~~~~--------------------------~~~~~a~~~~~~ 75 (395)
T 4e1l_A 29 AVQLGTIAVKEAISRVGL---NLSEID----EVIIGNVLQTG--------------------------LGQNVARQIAIN 75 (395)
T ss_dssp HHHHHHHHHHHHHHHTTC---CGGGCC----EEEEECCCCSS--------------------------TTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCC---CHHHCC----EEEEEeccCCC--------------------------CcchHHHHHHHH
Confidence 467999999999999999 667777 78888753211 011247788999
Q ss_pred hCC--CCcceeecccChHHHHHHHHHHHHHHhCCCCEEEEEeeccccchhhhh---------------------------
Q 012221 206 LGF--MGPNYSISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAIIPIGLG--------------------------- 256 (468)
Q Consensus 206 lgl--~Gp~~~v~~acas~l~Al~~A~~~I~~G~~d~~lvgG~e~~~~p~~~~--------------------------- 256 (468)
+|+ ++|+++|+++|+|++.||+.|+++|++|++|.+||+|+|.+.......
T Consensus 76 lGl~~~~p~~~v~~~Css~~~al~~A~~~I~~G~~~~vlv~g~e~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (395)
T 4e1l_A 76 AGIPNSVPSYTVNKLCGSGLKSVQLAAQSITSGENDVVIAGGTENMSQAPYIVPTARFGSKMGNITMVDSMLTDGLIDAF 155 (395)
T ss_dssp TTCCTTSCEEEECCGGGHHHHHHHHHHHHHHTTSCSEEEEEEEEETTTHHHHSBHHHHEEESCCC------CCTTEEEET
T ss_pred cCCCCCceEEEccccchHHHHHHHHHHHHHhCCCCCEEEEEEEecccCCcccccccccccccCccccchhhccccccccc
Confidence 999 679999999999999999999999999999999999999754421100
Q ss_pred -----Hhhh----------------------c--------ccccc----------C----CCCCCCCCCC----------
Q 012221 257 -----GFVA----------------------C--------RALSQ----------R----NDDPQTASRP---------- 277 (468)
Q Consensus 257 -----~~~~----------------------~--------~~l~~----------~----~~~~~~~~rp---------- 277 (468)
+... . +.+.. + ..++++.+|+
T Consensus 156 ~~~~~g~~a~~~~~~~g~tre~~~~~a~~s~~~a~~a~~~g~~~~ei~pv~~~~~~g~~~~~~~d~~~r~~~t~e~l~~~ 235 (395)
T 4e1l_A 156 NQYHMGITAENIATKFEFTREMQDKLALESQNKAENAIKNNRFKEEIVPVDVLIRRGKIETIDKDEYPKLGMTFEGLSKL 235 (395)
T ss_dssp THHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHTTTTTTTBCCEEEEEETTEEEEECSCSCCCTTCCHHHHHHC
T ss_pred ccchHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHcCCcccceeeeEeccCCCcceEECCccccCCCCCHHHHhhC
Confidence 0000 0 00000 0 0122333332
Q ss_pred ---CCC-----CCCCeeecceeEEEEecchhHHHhcCCceEEEEEEEEEcCCCCCCCCCCCChHHHHHHHHHHHHHcCCC
Q 012221 278 ---WDK-----DRDGFVMGEGAGVLVMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAGVS 349 (468)
Q Consensus 278 ---fd~-----~~~G~v~gEGaaavvL~~~~~A~~~g~~i~a~i~g~~~~~d~~~~~~~~~~~~~~~~~i~~al~~Agl~ 349 (468)
|+. ..|+..++||++++||++++.|+++|.+++++|+|++.+++ .|.+.+.++..+++++|+++|++
T Consensus 236 ~~v~~~~g~~t~~~~~~~~dGaaavvL~s~~~A~~~g~~~~a~i~g~~~~~~-----~p~~~~~~~~~ai~~al~~agl~ 310 (395)
T 4e1l_A 236 KPAFKKDGTVTAGNASGINDGAAMLILMSQQKADELGIRPLAKIKSYASAGV-----EPEVMGTGPIPATRKALKKAGLS 310 (395)
T ss_dssp CBSSSTTCSCBTTSBCCCEEEEEEEEEEEHHHHHHHTCCCSEEEEEEEEEEC-----CGGGTTCTHHHHHHHHHHHTTCC
T ss_pred CCccCCCCCeeCCcCCCccceEEEEEEecHHHHHHCCCCeEEEEEEEEEccC-----CCCcchHHHHHHHHHHHHHcCCC
Confidence 432 24677789999999999999999999999999999999874 34444556788999999999999
Q ss_pred CCCcCEEEEccCCCccCCHHHHHHHHHHhcc-CCCceeeecccccCccccchhHHHHHHHHHHHhcCCcCCCCCCCCCCC
Q 012221 350 PEEVNYINAHATSTLAGDLAEINAIKKVFKN-TTGIKINATKSMIGHCLGAAGGLEAIATVKAITTGWLHPSINQFNPEP 428 (468)
Q Consensus 350 ~~dId~v~~h~~gt~~~D~~E~~al~~~f~~-~~~~~v~s~k~~~Gh~~~AsG~~~l~~~~~~l~~~~~pp~~~~~~~~~ 428 (468)
|+||||||+|+.++ +|..++.+.|+. ..+++++++|.++||++||+|+.++++++++|+++
T Consensus 311 ~~dId~ve~~d~fa-----~~~~~~~~~lg~~~~~v~~~gg~~~~Gh~~gasG~~~~~~~~~~L~~~------------- 372 (395)
T 4e1l_A 311 INDIDLIEANEAFA-----AQALAVKNELQIDSSKLNVNGGAIALGHPIGASGARILVTLIYEMQKR------------- 372 (395)
T ss_dssp GGGCSEEEECCSBH-----HHHHHHHHHHTCCGGGBSTTCCHHHHCCCTTTHHHHHHHHHHHHHHHH-------------
T ss_pred HHHcCEEEecChhH-----HHHHHHHHHhCCCCCCCCcCCchhhcCCcHHHHHHHHHHHHHHHHHhc-------------
Confidence 99999999996643 788888888875 34689999999999999999999999999999884
Q ss_pred CCCcccccccccccCccEEEEEcccccCeeeEEEEee
Q 012221 429 SVEFDTVANKKQQHEVNVAISNSFGFGGHNSVVAFSA 465 (468)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~l~~s~g~gG~n~~~vl~~ 465 (468)
..++++++..+-||...++||++
T Consensus 373 --------------~~~~gl~~~c~ggG~g~a~~~e~ 395 (395)
T 4e1l_A 373 --------------KVETGLATLCIGGGQGISMVVSR 395 (395)
T ss_dssp --------------TCSEEEEEEESSTTEEEEEEEEC
T ss_pred --------------CCCEEEEEEccCCCceEEEEEeC
Confidence 23578888888889999999974
|
| >1ub7_A 3-oxoacyl-[acyl-carrier protein] synthase; fatty acid synthesis, beta-ketoacyl-ACP synthase III, FABH; 2.30A {Thermus thermophilus} SCOP: c.95.1.2 c.95.1.2 | Back alignment and structure |
|---|
Probab=99.98 E-value=3e-32 Score=267.11 Aligned_cols=294 Identities=18% Similarity=0.199 Sum_probs=208.4
Q ss_pred EEEEeeceeccCC-CCHHHHHHHHHcCCCCccccCCCCCCCCCCccccccCCCCCCCCCCccc-cccCCHHHHHHHHHHH
Q 012221 58 VVITGMGLVSVFG-NDVDAYYNKLLDGESGITMIDRFDASKFPTRFGGQIRGFSAEGYIDGKN-DRRLDDCLRYCIVAGK 135 (468)
Q Consensus 58 V~ItG~g~~~p~g-~~~~~~~~~L~~G~~~i~~~~~~~~~~~~~~~~g~v~~~d~~~~i~~~~-~~~~d~~~~l~l~a~~ 135 (468)
+.|+|+|...|.. .+.+++++.+. .+ +.|-... .+ |..+. ...-++..+|+++|++
T Consensus 2 ~~I~~~g~~~P~~~~~~~~~~~~~~--~~-----~~~i~~~---------~G------i~~r~~~~~~~~~~~la~~a~~ 59 (322)
T 1ub7_A 2 SGILALGAYVPERVMTNADFEAYLD--TS-----DEWIVTR---------TG------IKERRVAAEDEYTSDLAFKAVE 59 (322)
T ss_dssp CEEEEEEEECCSEEEEHHHHHTTSS--CC-----HHHHHHH---------TC------CCEEEECCTTCCHHHHHHHHHH
T ss_pred cEEEEEEEECCCceecHHHHHHHhC--CC-----HHHHHHh---------cC------ceEEeecCCCCCHHHHHHHHHH
Confidence 5799999999988 56777765321 11 0110000 00 11111 1113467899999999
Q ss_pred HHHHHcCCCCccccccccccceEEEeecCCCccchHHHHHHHHHhCCCCcCCcCcchhhhhhhHHHHhhhhCCCCcceee
Q 012221 136 KALEDADLGADISKKIDKERAGVLVGTGMGGLTVFSDGVQALIEKGHRKITPFFIPYAITNMGSALLAIDLGFMGPNYSI 215 (468)
Q Consensus 136 ~AL~dAgl~~~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~ia~~lgl~Gp~~~v 215 (468)
+||+++|+ ++++++ +|++|+..... .. ...+.+++..+|+++|+++|
T Consensus 60 ~al~~ag~---~~~~id----~vi~~~~~~~~---------------------~~-----~~~a~~v~~~lgl~~~~~~v 106 (322)
T 1ub7_A 60 DLLRRHPG---ALEGVD----AVIVATNTPDA---------------------LF-----PDTAALVQARFGLKAFAYDL 106 (322)
T ss_dssp HHHHHSTT---TTTTEE----EEEEECSSCSE---------------------EE-----SCHHHHHHHHTTCCCEEEEE
T ss_pred HHHHHcCC---CHHHCC----EEEEEcCCCCC---------------------CC-----CcHHHHHHHHhCCCCEEEee
Confidence 99999999 445554 68888753211 01 12478899999999999999
Q ss_pred cccChHHHHHHHHHHHHHHhCCCCEEEEEeeccccchhhhhHhhhccccccCCCCCCCCCCCCCCCCCCeeecceeEEEE
Q 012221 216 STACATSNYCFYAAANHIRRGEADLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWDKDRDGFVMGEGAGVLV 295 (468)
Q Consensus 216 ~~acas~l~Al~~A~~~I~~G~~d~~lvgG~e~~~~p~~~~~~~~~~~l~~~~~~~~~~~rpfd~~~~G~v~gEGaaavv 295 (468)
+++|+|++.||..|+++|++|++|.+||+|+|. .++. ..|+| +++|+++||||+++|
T Consensus 107 ~~aCas~~~al~~A~~~i~~g~~~~vlv~g~e~-~s~~---------------------~~~~d-~~~~~~~GdGA~A~v 163 (322)
T 1ub7_A 107 LAGCPGWIYALAQAHALVEAGLAQKVLAVGAEA-LSKI---------------------IDWND-RATAVLFGDGGGAAV 163 (322)
T ss_dssp ECSTTHHHHHHHHHHHHHHTTSCSEEEEEEEEC-GGGT---------------------SCTTC-HHHHTTBCCEEEEEE
T ss_pred CccchHHHHHHHHHHHHHHcCCCCEEEEEEech-hccc---------------------cChhh-cccceeeccccEEEE
Confidence 999999999999999999999999999999997 3331 12344 567999999999999
Q ss_pred ecchhHHHhcCCceEEEE-EEEEEcCCCCCCCC-----CCC---------Ch--------HHHHHHHHHHHHHcCCCCCC
Q 012221 296 MESLEHAMKRGAPIIAEY-LGGAVNCDAYHMTD-----PRA---------DG--------LGVSSCIESSLEDAGVSPEE 352 (468)
Q Consensus 296 L~~~~~A~~~g~~i~a~i-~g~~~~~d~~~~~~-----~~~---------~~--------~~~~~~i~~al~~Agl~~~d 352 (468)
|++.+. +.++++.+ .+.+...+..++.. |.. ++ ..+.++++++|+++|++++|
T Consensus 164 L~~~~~----~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~al~~agl~~~d 239 (322)
T 1ub7_A 164 VGKVRE----GYGFRSFVLGADGTGAKELYHACVAPRLPDGTSMKNRLYMNGREVFKFAVRVMNTATLEAIEKAGLTPED 239 (322)
T ss_dssp EECCCT----TCEEEEEEEEECGGGCTTEEEESSCSBCTTSCBCCSSCEECHHHHHHHHHHHHHHHHHHHHHHHTCCGGG
T ss_pred EEecCC----CCceeEEEEEEecCCCCeEEeCCCCCCCCccccccceEEecCHHHHHHHHHHHHHHHHHHHHHcCCCHHH
Confidence 998653 34566554 22222222222111 222 33 57888999999999999999
Q ss_pred cCEEEEccCCCccCCHHHHHHHHHHhccCCCceeeecccccCccccchhHHHHHHHHHHHhcCCcCCCCCCCCCCCCCCc
Q 012221 353 VNYINAHATSTLAGDLAEINAIKKVFKNTTGIKINATKSMIGHCLGAAGGLEAIATVKAITTGWLHPSINQFNPEPSVEF 432 (468)
Q Consensus 353 Id~v~~h~~gt~~~D~~E~~al~~~f~~~~~~~v~s~k~~~Gh~~~AsG~~~l~~~~~~l~~~~~pp~~~~~~~~~~~~~ 432 (468)
||||++|+++++..| ++.+.|+.. .-.+.+.|..+||+.+|++.+.+.++ ++++.+.
T Consensus 240 id~~~~H~~~~~~~d-----~~~~~lg~~-~~~~~~~~~~~Gh~~~As~~~~l~~~---l~~g~~~-------------- 296 (322)
T 1ub7_A 240 IRLFVPHQANLRIID-----AARERLGLP-WERVAVNVDRYGNTSTASIPLALKEA---VDAGRIR-------------- 296 (322)
T ss_dssp CSEEEECCSCHHHHH-----HHHHTTTCC-GGGBCCCHHHHCBCGGGHHHHHHHHH---HHHTSSC--------------
T ss_pred CCEEEEcCCCHHHHH-----HHHHHcCCC-HHHHHHHHHhhCcHHHHHHHHHHHHH---HHhCCCC--------------
Confidence 999999999998765 356667642 11244779999999999999977654 5556541
Q ss_pred ccccccccccCccEEEEEcccccCeeeEEEEeec
Q 012221 433 DTVANKKQQHEVNVAISNSFGFGGHNSVVAFSAF 466 (468)
Q Consensus 433 ~~~~~~~~~~~~~~~l~~s~g~gG~n~~~vl~~~ 466 (468)
+.+.+++++||+|++|+++||+.+
T Consensus 297 ----------~g~~~l~~~~G~G~~~~~~vl~~~ 320 (322)
T 1ub7_A 297 ----------EGDHVLLVSFGAGLTWAAAVLTWG 320 (322)
T ss_dssp ----------TTCEEEEEEEETTTEEEEEEEECC
T ss_pred ----------CCCEEEEEEEChhheeEEEEEEeC
Confidence 235789999999999999999764
|
| >3svk_A Acetyl-COA acetyltransferase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.20A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.7e-31 Score=266.10 Aligned_cols=272 Identities=17% Similarity=0.184 Sum_probs=198.5
Q ss_pred HHHHHHHHHHHHHHH-cCCCCccccccccccceEEEeecCCCccchHHHHHHHHHhCCCCcCCcCcchhhhhhhHHHHhh
Q 012221 126 CLRYCIVAGKKALED-ADLGADISKKIDKERAGVLVGTGMGGLTVFSDGVQALIEKGHRKITPFFIPYAITNMGSALLAI 204 (468)
Q Consensus 126 ~~~l~l~a~~~AL~d-Agl~~~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~ia~ 204 (468)
...|+.+++++||+| +|+ +++++| +|++|+...... .....+.+++.
T Consensus 32 ~~~L~~~A~~~AL~~~AGl---~~~dId----~vi~g~~~~~~~-------------------------~~~~~a~~va~ 79 (407)
T 3svk_A 32 PLNLVVGLVDELRRRYPDL---DETLIS----DMILGVVSPVGD-------------------------QGGDIARTAVL 79 (407)
T ss_dssp HHHHHHHHHHHHHHHSTTC---CGGGEE----EEEEECC---------------------------------CHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhcCc---CHHHCC----EEEEEecCcccc-------------------------ccCcHHHHHHH
Confidence 577999999999999 999 667777 688887432100 01224678899
Q ss_pred hhCC--CCcceeecccChHHHHHHHHHHHHHHhCCCCEEEEEeeccccch-hh-------------------hhHhh---
Q 012221 205 DLGF--MGPNYSISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAIIP-IG-------------------LGGFV--- 259 (468)
Q Consensus 205 ~lgl--~Gp~~~v~~acas~l~Al~~A~~~I~~G~~d~~lvgG~e~~~~p-~~-------------------~~~~~--- 259 (468)
.+|+ ++|+++|+++|+|++.||+.|+++|++|++|++||+|+|.+... .. ..++.
T Consensus 80 ~lGlp~~~pa~~v~~~Css~~~Al~~A~~~I~sG~~d~vLv~G~e~~s~~p~~~~~~~~~~~~~~~~~~~~~~~g~~Ae~ 159 (407)
T 3svk_A 80 AAGLPETTGGVQLNRFCASGLEAVNTAAQKVRSGWDDLVLAGGVESMSRVPMGSDGGAWATDPETNYRIGFVPQGIGADL 159 (407)
T ss_dssp HTTCCTTCEEEEEC---CBSCCHHHHHHHHHHHTSCCEEEEEEEECC-----------CCCCTTTCCCCCCHHHHHHHHH
T ss_pred HcCCCCCCceEEecCcChhHHHHHHHHHHHHHcCCCCEEEEEEEcccccCcccccccccccCchhhccccccCHHHHHHH
Confidence 9999 67999999999999999999999999999999999999975431 00 00000
Q ss_pred ---------------------------hcccccc--------C---CCCCCCCCCC-------------CCCC-------
Q 012221 260 ---------------------------ACRALSQ--------R---NDDPQTASRP-------------WDKD------- 281 (468)
Q Consensus 260 ---------------------------~~~~l~~--------~---~~~~~~~~rp-------------fd~~------- 281 (468)
..+.+.. . ..+|+..+|+ |+..
T Consensus 160 ~a~~~~i~re~~d~~a~~s~~~A~~A~~~g~~~~ei~pv~~~~g~~~~~pd~~~r~~~t~e~l~~~~~vf~~~g~v~~~~ 239 (407)
T 3svk_A 160 IATLEGFSREDVDAYALRSQQKAAAAWSGGYFAKSVVPVRDQNGLVILDHDEHMRPDTTMEGLAKLKTAFDGVGEMGGFD 239 (407)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHHHHHHHHTTTTTTTBCCEECTTSCEEECSCTTCCTTCCHHHHHTSCBSCC---------
T ss_pred HHHHhCcCHHHHHHHHHHHHHHHHHHHHcCCcccceeeeecCCCceeeCCccccCCCCCHHHHhhCCCeecCCCcccccc
Confidence 0000000 0 0123444443 4421
Q ss_pred -------------------CCCeeecceeEEEEecchhHHHhcCCceEEEEEEEEEcCCCCCCCCCCCChHHHHHHHHHH
Q 012221 282 -------------------RDGFVMGEGAGVLVMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESS 342 (468)
Q Consensus 282 -------------------~~G~v~gEGaaavvL~~~~~A~~~g~~i~a~i~g~~~~~d~~~~~~~~~~~~~~~~~i~~a 342 (468)
.|+..++||++++||++++.|+++|.+++++|.|++.+.+... ..+.+...+++++
T Consensus 240 ~~~~~~~~~~~~i~~~~t~~~~s~~~DGAaavvL~s~~~A~~~g~~~~a~i~g~~~~~~~p~-----~~~~~~~~a~~~a 314 (407)
T 3svk_A 240 DVALQKYHWVEKINHVHTGGNSSGIVDGAALVLVGSEKAGKSQGLTPRARIVATATSGSDPV-----IMLTGPTPATRKV 314 (407)
T ss_dssp ----CTTTTCSSCCCCCBTTTBCCBEEEEEEEEEECHHHHHHTTCCCCEEEEEEEEC-----------CCCTHHHHHHHH
T ss_pred ccccccccccccccccccccccCcccCceeEEEEeeHHHHHHcCCCCcEEEEEEEEeccCCc-----cccHHHHHHHHHH
Confidence 4666799999999999999999999999999999999876432 2233457899999
Q ss_pred HHHcCCCCCCcCEEEEccCCCccCCHHHHHHHHHHhcc-CCCceeeecccccCccccchhHHHHHHHHHHHhcCCcCCCC
Q 012221 343 LEDAGVSPEEVNYINAHATSTLAGDLAEINAIKKVFKN-TTGIKINATKSMIGHCLGAAGGLEAIATVKAITTGWLHPSI 421 (468)
Q Consensus 343 l~~Agl~~~dId~v~~h~~gt~~~D~~E~~al~~~f~~-~~~~~v~s~k~~~Gh~~~AsG~~~l~~~~~~l~~~~~pp~~ 421 (468)
|+++|++++||||||+|++++. .|+..++ .|+- ..+++++++|..+||++||+|+.++++++++|+++
T Consensus 315 l~~Agl~~~dId~~e~hdaf~~----~~l~~~~-~lg~~~~~vn~~Gg~~~~GHp~gasG~~~~~~~~~~L~~~------ 383 (407)
T 3svk_A 315 LDRAGLTIDDIDLFELNEAFAS----VVLKFQK-DLNIPDEKLNVNGGAIAMGHPLGATGAMITGTMVDELERR------ 383 (407)
T ss_dssp HHHHTCCGGGCSEEEECCSBHH----HHHHHHH-HHTCCGGGBSTTCCHHHHCBCGGGHHHHHHHHHHHHHHHH------
T ss_pred HHHcCCCHHHCCEEEEeChhHH----HHHHHHH-HhCCCCCCCCCCCcHhheeCcHHHHHHHHHHHHHHHHHhc------
Confidence 9999999999999999998875 3544443 3443 34789999999999999999999999999999873
Q ss_pred CCCCCCCCCCcccccccccccCccEEEEEcccccCeeeEEEEeec
Q 012221 422 NQFNPEPSVEFDTVANKKQQHEVNVAISNSFGFGGHNSVVAFSAF 466 (468)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~g~gG~n~~~vl~~~ 466 (468)
..++++++..+-||...++||++.
T Consensus 384 ---------------------~~~~gl~~~c~ggG~g~a~~~e~~ 407 (407)
T 3svk_A 384 ---------------------NARRALITLCIGGGMGVATIIERV 407 (407)
T ss_dssp ---------------------TCCEEEEEEECSSSCEEEEEEEEC
T ss_pred ---------------------CCCEEEEEeeccCcceEEEEEEcC
Confidence 246888888899999999999873
|
| >2ebd_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, aquifex VF5, lipid metabolism, structural genomics; 2.10A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.97 E-value=4.2e-30 Score=250.32 Aligned_cols=289 Identities=21% Similarity=0.263 Sum_probs=205.7
Q ss_pred cEEEEeeceeccCC-CCHHHHHHHHHcCCCCccccCCCCCCCCCCccccccCCCCCCCCCCccccccCCHHHHHHHHHHH
Q 012221 57 RVVITGMGLVSVFG-NDVDAYYNKLLDGESGITMIDRFDASKFPTRFGGQIRGFSAEGYIDGKNDRRLDDCLRYCIVAGK 135 (468)
Q Consensus 57 ~V~ItG~g~~~p~g-~~~~~~~~~L~~G~~~i~~~~~~~~~~~~~~~~g~v~~~d~~~~i~~~~~~~~d~~~~l~l~a~~ 135 (468)
++.|+|+|...|.. .+.+++++.+. .+ +.|-. ...+ |..+.....++..+|+++|++
T Consensus 2 ~~~I~~~g~~~P~~~~~~~~~~~~~~--~~-----~~~i~---------~~~G------i~~r~~~~~~~~~~l~~~a~~ 59 (309)
T 2ebd_A 2 GTKIIGTGVYLPKNVLTNFDLEKIVD--TS-----DEWIT---------TRTG------IKERRIAKEETITYMATQAAK 59 (309)
T ss_dssp CEEEEEEEEECCSEEEEHHHHHTTSS--CC-----HHHHH---------HHHC------CCEEEECSSCCHHHHHHHHHH
T ss_pred ceEEEEEEEECCCceEcHHHHHHHcC--CC-----HHHHH---------HHhC------ceeeeecCCCCHHHHHHHHHH
Confidence 58999999999998 46777664321 11 00000 0000 111111111568899999999
Q ss_pred HHHHHcCCCCccccccccccceEEEeecCCCccchHHHHHHHHHhCCCCcCCcCcchhhhhhhHHHHhhhhCCCC-ccee
Q 012221 136 KALEDADLGADISKKIDKERAGVLVGTGMGGLTVFSDGVQALIEKGHRKITPFFIPYAITNMGSALLAIDLGFMG-PNYS 214 (468)
Q Consensus 136 ~AL~dAgl~~~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~ia~~lgl~G-p~~~ 214 (468)
+||+++|+ ++++++ +|++|+..+.. .. ++ .+.+++..+|+++ |+++
T Consensus 60 ~al~~ag~---~~~~id----~v~~~~~~~~~---------------------~~----~~-~a~~v~~~lgl~~~~~~~ 106 (309)
T 2ebd_A 60 EALREANL---SPEELD----LIILATLTPQK---------------------RF----PS-TACLVQAQLKAKGVYAFD 106 (309)
T ss_dssp HHHHHHTC---CGGGCS----EEEEECSSCSS---------------------SS----SC-HHHHHHHHHTCTTCEEEE
T ss_pred HHHHHcCC---CHHHCC----EEEEEcCCCCC---------------------CC----Cc-HHHHHHHHhCCCCceEEe
Confidence 99999999 556666 79998764321 11 11 5789999999999 9999
Q ss_pred ecccChHHHHHHHHHHHHHHhCCCCEEEEEeeccccchhhhhHhhhccccccCCCCCCCCCCCCCCCCCCeeecceeEEE
Q 012221 215 ISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWDKDRDGFVMGEGAGVL 294 (468)
Q Consensus 215 v~~acas~l~Al~~A~~~I~~G~~d~~lvgG~e~~~~p~~~~~~~~~~~l~~~~~~~~~~~rpfd~~~~G~v~gEGaaav 294 (468)
++++|+|++.||+.|+++|++|++|.+||+|+|.+ ++. .. |+...+|+++||||+++
T Consensus 107 v~~~C~s~~~al~~A~~~i~~g~~~~vlv~g~e~~-s~~---------------------~~-~~~~~~~~~~gdGaaA~ 163 (309)
T 2ebd_A 107 ISAACSGFIYALDIADSFIKSGKAKNVLVIGAEKL-SEA---------------------VD-WEDRSTCVLFGDGAGAV 163 (309)
T ss_dssp EECGGGHHHHHHHHHHHHHHTTSCSEEEEEEEEEG-GGT---------------------CC-TTCTTTTTTBCEEEEEE
T ss_pred cCccchHHHHHHHHHHHHHHCCCCCEEEEEEeccc-ccc---------------------cC-ccchhhccccccccEEE
Confidence 99999999999999999999999999999999973 221 01 23356799999999999
Q ss_pred EecchhHHHhcCCceEEEEEEEEEcCCCC---CCCCC-----CCChH--------HHHHHHHHHHHHcCCCCCCcCEEEE
Q 012221 295 VMESLEHAMKRGAPIIAEYLGGAVNCDAY---HMTDP-----RADGL--------GVSSCIESSLEDAGVSPEEVNYINA 358 (468)
Q Consensus 295 vL~~~~~A~~~g~~i~a~i~g~~~~~d~~---~~~~~-----~~~~~--------~~~~~i~~al~~Agl~~~dId~v~~ 358 (468)
||++.+.+ ..+++.+ ..+|+. ++..| ..++. .+.++++++|+++|++++|||||++
T Consensus 164 vL~~~~~~----~~i~~~~----~~~~g~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~i~~al~~agl~~~did~~~~ 235 (309)
T 2ebd_A 164 VVTRSEDK----SDILATR----MYAEGSLEELLHADNCGYIRMKGRELFKVAVRSMEEVCREVLEKAGVKPEEVSLVIP 235 (309)
T ss_dssp EEEECSSS----CEEEEEE----EEECGGGGGGEEECTTCCEEECHHHHHHHHHHHHHHHHHHHHHHHTCCGGGCSEEEE
T ss_pred EEEecCCC----CceeEEE----EEecCCccceeEeCCCCeEEEccHHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEE
Confidence 99987643 2344443 333432 22223 33444 6788999999999999999999999
Q ss_pred ccCCCccCCHHHHHHHHHHhccCCCceeeecccccCccccchhHHHHHHHHHHHhcCCcCCCCCCCCCCCCCCccccccc
Q 012221 359 HATSTLAGDLAEINAIKKVFKNTTGIKINATKSMIGHCLGAAGGLEAIATVKAITTGWLHPSINQFNPEPSVEFDTVANK 438 (468)
Q Consensus 359 h~~gt~~~D~~E~~al~~~f~~~~~~~v~s~k~~~Gh~~~AsG~~~l~~~~~~l~~~~~pp~~~~~~~~~~~~~~~~~~~ 438 (468)
|+++++..| ++.+.|+.. .-.+.+.|..+||+.+|++++.+.+++. ++.+.
T Consensus 236 H~~~~~~~~-----~~~~~lg~~-~~~~~~~~~~~Gh~~~As~~~~L~~~~~---~g~~~-------------------- 286 (309)
T 2ebd_A 236 HQANVRIIN-----ALAEKLNIP-KEKVFVNIQKYGNTSAASIPIALHEAIK---EGKVK-------------------- 286 (309)
T ss_dssp CCSCHHHHH-----HHHHHTTCC-GGGBCCCHHHHCBCGGGHHHHHHHHHHH---TTCCC--------------------
T ss_pred cCCCHHHHH-----HHHHHhCCC-HHHhhhhHhhhcchHHHHHHHHHHHHHH---cCCCC--------------------
Confidence 999998654 456677652 1123467899999999999999887743 33221
Q ss_pred ccccCccEEEEEcccccCeeeEEEEe
Q 012221 439 KQQHEVNVAISNSFGFGGHNSVVAFS 464 (468)
Q Consensus 439 ~~~~~~~~~l~~s~g~gG~n~~~vl~ 464 (468)
+.+.++..+||.|.+..+++++
T Consensus 287 ----~G~~~l~~~~G~G~~~~~~~l~ 308 (309)
T 2ebd_A 287 ----RGDLILMTAMGGGLTWGAVLLR 308 (309)
T ss_dssp ----TTCEEEEEEEETTTEEEEEEEE
T ss_pred ----CCCEEEEEEEchhhhhEEEEEE
Confidence 1246778899999999999885
|
| >1hnj_A Beta-ketoacyl-acyl carrier protein synthase III; FABH, transferase; HET: MLC; 1.46A {Escherichia coli} SCOP: c.95.1.2 c.95.1.2 PDB: 1hn9_A* 1hnh_A* 1hnd_A* 1hnk_A 1mzs_A* 2eft_A* 2gyo_A* 3il9_A 1ebl_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=7.6e-30 Score=249.41 Aligned_cols=292 Identities=16% Similarity=0.187 Sum_probs=207.0
Q ss_pred cEEEEeeceeccCC-CCHHHHHHHHHcCCCCccccCCCCCCCCCCccccccCCCCCCCCCCccc-cccCCHHHHHHHHHH
Q 012221 57 RVVITGMGLVSVFG-NDVDAYYNKLLDGESGITMIDRFDASKFPTRFGGQIRGFSAEGYIDGKN-DRRLDDCLRYCIVAG 134 (468)
Q Consensus 57 ~V~ItG~g~~~p~g-~~~~~~~~~L~~G~~~i~~~~~~~~~~~~~~~~g~v~~~d~~~~i~~~~-~~~~d~~~~l~l~a~ 134 (468)
++.|+|+|...|.. .+.+++++.+. .+ +.|-. ...+ |..+. ....++..+|+++|+
T Consensus 2 ~~~I~~~g~~~P~~~~~~~~~~~~~~--~~-----~~~i~---------~~~G------i~~r~~~~~~~~~~~l~~~a~ 59 (317)
T 1hnj_A 2 YTKIIGTGSYLPEQVRTNADLEKMVD--TS-----DEWIV---------TRTG------IRERHIAAPNETVSTMGFEAA 59 (317)
T ss_dssp EEEEEEEEEECCSEEEEHHHHHTTSS--CC-----HHHHH---------HHHC------CCEEEECCTTCCHHHHHHHHH
T ss_pred CcEEEEEEEeCCCceecHHHHHHHhC--CC-----HHHHH---------HHhC------ceEEEecCCCCCHHHHHHHHH
Confidence 58999999999998 56777765321 11 11100 0000 11121 113456889999999
Q ss_pred HHHHHHcCCCCccccccccccceEEEeecCCCccchHHHHHHHHHhCCCCcCCcCcchhhhhhhHHHHhhhhCCC-Ccce
Q 012221 135 KKALEDADLGADISKKIDKERAGVLVGTGMGGLTVFSDGVQALIEKGHRKITPFFIPYAITNMGSALLAIDLGFM-GPNY 213 (468)
Q Consensus 135 ~~AL~dAgl~~~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~ia~~lgl~-Gp~~ 213 (468)
++||+++|+ ++++++ +|++|+..... . ....+.+++..||++ +|++
T Consensus 60 ~~al~~ag~---~~~~id----~vi~g~~~~~~---------------------~-----~~~~a~~v~~~lgl~~~~~~ 106 (317)
T 1hnj_A 60 TRAIEMAGI---EKDQIG----LIVVATTSATH---------------------A-----FPSAACQIQSMLGIKGCPAF 106 (317)
T ss_dssp HHHHHHHTC---CGGGCC----EEEEECSCCSC---------------------S-----SSCHHHHHHHHHTCCSSCEE
T ss_pred HHHHHHcCC---CHHHCC----EEEEEcCCCCC---------------------C-----CCcHHHHHHHHhCCCCCeEE
Confidence 999999999 555665 68888753210 0 123578999999998 8999
Q ss_pred eecccChHHHHHHHHHHHHHHhCCCCEEEEEeeccccchhhhhHhhhccccccCCCCCCCCCCCCCCCCCCeeecceeEE
Q 012221 214 SISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWDKDRDGFVMGEGAGV 293 (468)
Q Consensus 214 ~v~~acas~l~Al~~A~~~I~~G~~d~~lvgG~e~~~~p~~~~~~~~~~~l~~~~~~~~~~~rpfd~~~~G~v~gEGaaa 293 (468)
+|+++|+|++.||+.|+++|++|++|.+||+|+|. .++.. . |+...+|+++||||++
T Consensus 107 ~v~~aCas~~~al~~A~~~i~~g~~~~vlv~g~e~-~s~~~---------------------~-~~d~~~~~~~GdGA~A 163 (317)
T 1hnj_A 107 DVAAACAGFTYALSVADQYVKSGAVKYALVVGSDV-LARTC---------------------D-PTDRGTIIIFGDGAGA 163 (317)
T ss_dssp EECCGGGHHHHHHHHHHHHHHTTSCSEEEEEEEEC-HHHHS---------------------C-TTCHHHHTTBCCEEEE
T ss_pred eeCcccHHHHHHHHHHHHHHHCCCCCEEEEEEech-hcccC---------------------C-chhcccceeeccccEE
Confidence 99999999999999999999999999999999997 22210 0 2223458999999999
Q ss_pred EEecchhHHHhcCCceEEEEEEE-EEcCCCCCCCCC-----------CCChH--------HHHHHHHHHHHHcCCCCCCc
Q 012221 294 LVMESLEHAMKRGAPIIAEYLGG-AVNCDAYHMTDP-----------RADGL--------GVSSCIESSLEDAGVSPEEV 353 (468)
Q Consensus 294 vvL~~~~~A~~~g~~i~a~i~g~-~~~~d~~~~~~~-----------~~~~~--------~~~~~i~~al~~Agl~~~dI 353 (468)
+||++.+. ..+++.+.+. +...+..+...+ ..++. .+.++|+++|+++|++++||
T Consensus 164 ~vL~~~~~-----~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~aL~~agl~~~di 238 (317)
T 1hnj_A 164 AVLAASEE-----PGIISTHLHADGSYGELLTLPNADRVNPENSIHLTMAGNEVFKVAVTELAHIVDETLAANNLDRSQL 238 (317)
T ss_dssp EEEEEESS-----CSEEEEEEEECGGGGGGEECCCCCSSCTTSCCSCEECHHHHHHHHHHHHHHHHHHHHHHTTCCGGGC
T ss_pred EEEEecCC-----CceeeEEEEEcCCCCCeEEECCCCCCCCCCCceEEecCHHHHHHHHHHHHHHHHHHHHHcCCCHHHC
Confidence 99998652 3577776552 222222222221 13455 67889999999999999999
Q ss_pred CEEEEccCCCccCCHHHHHHHHHHhccCCCceeeecccccCccccchhHHHHHHHHHHHhcCCcCCCCCCCCCCCCCCcc
Q 012221 354 NYINAHATSTLAGDLAEINAIKKVFKNTTGIKINATKSMIGHCLGAAGGLEAIATVKAITTGWLHPSINQFNPEPSVEFD 433 (468)
Q Consensus 354 d~v~~h~~gt~~~D~~E~~al~~~f~~~~~~~v~s~k~~~Gh~~~AsG~~~l~~~~~~l~~~~~pp~~~~~~~~~~~~~~ 433 (468)
|||++|+++++..| ++.+.|+.. .-.+.+.|+.+||+.+|++.+.|..+ ++.+.+.
T Consensus 239 d~v~~H~~~~~~~d-----~i~~~lg~~-~~~~~~~~~~~Gn~~~As~~~~L~~~---~~~~~~~--------------- 294 (317)
T 1hnj_A 239 DWLVPHQANLRIIS-----ATAKKLGMS-MDNVVVTLDRHGNTSAASVPCALDEA---VRDGRIK--------------- 294 (317)
T ss_dssp CEEEECCSCHHHHH-----HHHHHTTCC-GGGBCCCHHHHCBCGGGHHHHHHHHH---HHTTCSC---------------
T ss_pred CEEEEcCCCHHHHH-----HHHHHcCCC-HHHhHhhHhhhCcHHHHHHHHHHHHH---HHhCCCC---------------
Confidence 99999999998765 466777652 22345789999999999999887655 3444331
Q ss_pred cccccccccCccEEEEEcccccCeeeEEEEe
Q 012221 434 TVANKKQQHEVNVAISNSFGFGGHNSVVAFS 464 (468)
Q Consensus 434 ~~~~~~~~~~~~~~l~~s~g~gG~n~~~vl~ 464 (468)
+-+.++..+||.|.+..+++|+
T Consensus 295 ---------~G~~vll~~~G~G~t~~~~~l~ 316 (317)
T 1hnj_A 295 ---------PGQLVLLEAFGGGFTWGSALVR 316 (317)
T ss_dssp ---------TTCEEEEEEEETTTEEEEEEEE
T ss_pred ---------CCCEEEEEEEchhheeEEEEEE
Confidence 1235677899999888888875
|
| >1mzj_A Beta-ketoacylsynthase III; beta-ketosynthase, aromatic polyketide, biosynthetic engineering, catalytic triad, transferase; HET: COA; 2.10A {Streptomyces SP} SCOP: c.95.1.2 c.95.1.2 | Back alignment and structure |
|---|
Probab=99.96 E-value=1e-29 Score=250.67 Aligned_cols=300 Identities=19% Similarity=0.184 Sum_probs=207.3
Q ss_pred CCCCCcEEEEeeceeccCC-CCHHHHHHHHHcCCCCccccCCCCCCCCCCccccccCCCCCCCCCCcccc-ccCCHHHHH
Q 012221 52 KDPKKRVVITGMGLVSVFG-NDVDAYYNKLLDGESGITMIDRFDASKFPTRFGGQIRGFSAEGYIDGKND-RRLDDCLRY 129 (468)
Q Consensus 52 ~~~~~~V~ItG~g~~~p~g-~~~~~~~~~L~~G~~~i~~~~~~~~~~~~~~~~g~v~~~d~~~~i~~~~~-~~~d~~~~l 129 (468)
.+.+++++|+|+|+.+|.. .+.+++|+.+.. + ++|-.. ..+ |..+.. ...++..+|
T Consensus 6 ~~~~~~~~I~gig~~~P~~~~~~~~~~~~~~~--~-----~~~i~~---------~~G------i~~R~~~~~~~~~~~l 63 (339)
T 1mzj_A 6 VPERRFSRVLGVGSYRPRREVSNKEVCTWIDS--T-----EEWIET---------RTG------IRSRRIAEPDETIQVM 63 (339)
T ss_dssp CCCCCEEEEEEEEEECCSCEEEHHHHTTTSSC--C-----HHHHHH---------HHC------CSEEECCCTTCCHHHH
T ss_pred cCccCceEEEEEEEeCCCccccHHHHHHHhCC--C-----HHHHHH---------hcC------ceEEEEeCCCCCHHHH
Confidence 3445689999999999998 567777754321 0 111000 000 111111 123568899
Q ss_pred HHHHHHHHHHHcCCCCccccccccccceEEEeecCCCccchHHHHHHHHHhCCCCcCCcCcchhhhhhhHHHHhhhhCCC
Q 012221 130 CIVAGKKALEDADLGADISKKIDKERAGVLVGTGMGGLTVFSDGVQALIEKGHRKITPFFIPYAITNMGSALLAIDLGFM 209 (468)
Q Consensus 130 ~l~a~~~AL~dAgl~~~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~ia~~lgl~ 209 (468)
+++|+++||+++|+ ++++++ +|++|+..+.. ..+ ..+.+++..||++
T Consensus 64 a~~Aa~~al~~ag~---~~~~id----~vi~gt~~~~~---------------------~~p-----~~a~~v~~~lgl~ 110 (339)
T 1mzj_A 64 GVAASRRALEHAGV---DPAEID----LVVVSTMTNFV---------------------HTP-----PLSVAIAHELGAD 110 (339)
T ss_dssp HHHHHHHHHHHHTC---CGGGCC----EEEEECSCCCC---------------------CSS-----CHHHHHHHHHTCT
T ss_pred HHHHHHHHHHHcCC---CHHHCC----EEEEEecCCCC---------------------CCC-----hHHHHHHHHhCCC
Confidence 99999999999999 556666 78888764321 011 1478899999998
Q ss_pred -CcceeecccChHHHHHHHHHHHHHHhCCCCEEEEEeeccccchhhhhHhhhccccccCCCCCCCCCCCCCCCCCCeeec
Q 012221 210 -GPNYSISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWDKDRDGFVMG 288 (468)
Q Consensus 210 -Gp~~~v~~acas~l~Al~~A~~~I~~G~~d~~lvgG~e~~~~p~~~~~~~~~~~l~~~~~~~~~~~rpfd~~~~G~v~g 288 (468)
+|+++|+++|+|++.||+.|+++|++|++|.+||+|+|. .++. +. ++...+|+++|
T Consensus 111 ~~~~~~v~~aCas~~~Al~~A~~~i~~G~~~~vLv~g~e~-~s~~----------~~------------~~d~~~~~~~G 167 (339)
T 1mzj_A 111 NAGGFDLSAACAGFCHALSIAADAVESGGSRHVLVVATER-MTDV----------ID------------LADRSLSFLFG 167 (339)
T ss_dssp TCEEEEEECGGGHHHHHHHHHHHHHHHSSCSCEEEEEEEE-GGGG----------SC------------SSCTTTTTTBC
T ss_pred CccEEEccccchHHHHHHHHHHHHHHCCCCCEEEEEEEcc-cccc----------cC------------ccccccceEec
Confidence 699999999999999999999999999999999999997 3332 00 12246799999
Q ss_pred ceeEEEEecchhHHHhcCCceEEEE-EEEEEcCCCCCCC--CCC-------------CCh--------HHHHHHHHHHHH
Q 012221 289 EGAGVLVMESLEHAMKRGAPIIAEY-LGGAVNCDAYHMT--DPR-------------ADG--------LGVSSCIESSLE 344 (468)
Q Consensus 289 EGaaavvL~~~~~A~~~g~~i~a~i-~g~~~~~d~~~~~--~~~-------------~~~--------~~~~~~i~~al~ 344 (468)
|||+++||++.+. .++++.. .+.+...+..++. .|. .++ ..+.++++++|+
T Consensus 168 dGA~A~vL~~~~~-----~~i~~~~~~~~g~~~~~~~~~g~~p~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~i~~aL~ 242 (339)
T 1mzj_A 168 DGAGAAVVGPSDV-----PGIGPVVRGIDGTGLGSLHMSSSWDQYVEDPSVGRPALVMDGKRVFRWAVADVVPAAREALE 242 (339)
T ss_dssp EEEEEEEEEEESS-----CCBCCCEEEECGGGGGGEEESCCHHHHTTCSSSCSCCEEECHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCceEEEEEecCC-----CCeEEEEEEEcCCCCCeEEecCCCCCcccccccccceEEeeCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999997642 3444432 2222222222111 011 123 567889999999
Q ss_pred HcCCCCCCcCEEEEccCCCccCCHHHHHHHHHHhccCCCceeeecccccCccccchhHHHHHHHHHHHhcCCcCCCCCCC
Q 012221 345 DAGVSPEEVNYINAHATSTLAGDLAEINAIKKVFKNTTGIKINATKSMIGHCLGAAGGLEAIATVKAITTGWLHPSINQF 424 (468)
Q Consensus 345 ~Agl~~~dId~v~~h~~gt~~~D~~E~~al~~~f~~~~~~~v~s~k~~~Gh~~~AsG~~~l~~~~~~l~~~~~pp~~~~~ 424 (468)
++|++++|||||++|+++++.+|. +.+.++-...-.+......+||+.+|++.+.|.+++ +.+.+.
T Consensus 243 ~agl~~~did~v~~H~~~~~~~d~-----i~~~lg~~~~~~~~~~~~~~Gn~~sAs~~~~L~~~~---~~g~~~------ 308 (339)
T 1mzj_A 243 VAGLTVGDLVAFVPHQANLRIIDV-----LVDRLGVPEHVVVSRDAEDTGNTSSASVALALDRLV---RSGAVP------ 308 (339)
T ss_dssp TTTCCGGGCSEEEECCSCHHHHHH-----HHHHHTCCTTSEECCTHHHHCBCTTHHHHHHHHHHH---HHTSSC------
T ss_pred HcCCCHHHCCEEEECCCCHHHHHH-----HHHHhCCCccceeeehhhhcCchHHHHHHHHHHHHH---HcCCCC------
Confidence 999999999999999999998774 455666422202224457899999999988776553 444331
Q ss_pred CCCCCCCcccccccccccCccEEEEEcccccCeeeEEEEeec
Q 012221 425 NPEPSVEFDTVANKKQQHEVNVAISNSFGFGGHNSVVAFSAF 466 (468)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~l~~s~g~gG~n~~~vl~~~ 466 (468)
+-+.++..+||.|.+..+++|+-.
T Consensus 309 ------------------~G~~vll~~~G~G~t~~~~~l~~~ 332 (339)
T 1mzj_A 309 ------------------GGGPALMIGFGAGLSYAGQALLLP 332 (339)
T ss_dssp ------------------TTCEEEEEEEETTTEEEEEEEECC
T ss_pred ------------------CCCEEEEEEEchhheeEEEEEEeC
Confidence 124677889999999999999753
|
| >1zow_A 3-oxoacyl-[acyl-carrier-protein] synthase III; FABH, fatty acid biosynthesis, transferase; 2.00A {Staphylococcus aureus subsp} PDB: 3il7_A | Back alignment and structure |
|---|
Probab=99.96 E-value=4.1e-29 Score=243.81 Aligned_cols=292 Identities=18% Similarity=0.261 Sum_probs=201.9
Q ss_pred cEEEEeeceeccCC-CCHHHHHHHHHcCCCCccccCCCCCCCCCCccccccCCCCCCCCCCccc-cccCCHHHHHHHHHH
Q 012221 57 RVVITGMGLVSVFG-NDVDAYYNKLLDGESGITMIDRFDASKFPTRFGGQIRGFSAEGYIDGKN-DRRLDDCLRYCIVAG 134 (468)
Q Consensus 57 ~V~ItG~g~~~p~g-~~~~~~~~~L~~G~~~i~~~~~~~~~~~~~~~~g~v~~~d~~~~i~~~~-~~~~d~~~~l~l~a~ 134 (468)
++.|+|+|...|.. .+.+++++.+ +.+ +.|-. ...+ |..+. ...-.+..+|+++|+
T Consensus 2 ~~~I~~~g~~~P~~~~~~~~~~~~~--~~~-----~~~i~---------~~~g------i~~r~~~~~~~~~~~l~~~a~ 59 (313)
T 1zow_A 2 NVGIKGFGAYAPEKIIDNAYFEQFL--DTS-----DEWIS---------KMTG------IKERHWADDDQDTSDLAYEAS 59 (313)
T ss_dssp CEEEEEEEEECCSCEEEGGGGGGTS--SCC-----HHHHH---------HHHC------CSEEECCCTTCCHHHHHHHHH
T ss_pred ceEEEEEEEECCCccccHHHHHHhc--CCC-----HHHHH---------HhhC------ceEEEecCCCCCHHHHHHHHH
Confidence 48999999999987 4666665432 111 00000 0000 11111 111235789999999
Q ss_pred HHHHHHcCCCCccccccccccceEEEeecCCCccchHHHHHHHHHhCCCCcCCcCcchhhhhhhHHHHhhhhCCC-Ccce
Q 012221 135 KKALEDADLGADISKKIDKERAGVLVGTGMGGLTVFSDGVQALIEKGHRKITPFFIPYAITNMGSALLAIDLGFM-GPNY 213 (468)
Q Consensus 135 ~~AL~dAgl~~~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~ia~~lgl~-Gp~~ 213 (468)
++||+++|+ ++++++ +|++|+..++. ..+ ..+.+++..+|++ +|++
T Consensus 60 ~~al~~ag~---~~~~id----~vi~~~~~~~~---------------------~~~-----~~a~~v~~~lgl~~~~~~ 106 (313)
T 1zow_A 60 VKAIADAGI---QPEDID----MIIVATATGDM---------------------PFP-----TVANMLQERLGTGKVASM 106 (313)
T ss_dssp HHHHHHHTC---CGGGCC----EEEEECSSCSC---------------------SSS-----CHHHHHHHHHTCCSCCEE
T ss_pred HHHHHHcCC---CHHHCC----EEEEEcCCCCC---------------------CCC-----cHHHHHHHHhCCCCCcEE
Confidence 999999999 556665 78888764321 111 2378899999998 5999
Q ss_pred eecccChHHHHHHHHHHHHHHhCCCCEEEEEeeccccchhhhhHhhhccccccCCCCCCCCCCCCCCCCCCeeecceeEE
Q 012221 214 SISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWDKDRDGFVMGEGAGV 293 (468)
Q Consensus 214 ~v~~acas~l~Al~~A~~~I~~G~~d~~lvgG~e~~~~p~~~~~~~~~~~l~~~~~~~~~~~rpfd~~~~G~v~gEGaaa 293 (468)
+|+++|+|++.||..|+++|++|++|.+||+|+|.+ ++. .+|+|. .+|+++||||++
T Consensus 107 ~v~~aCas~~~al~~A~~~i~~g~~~~vLv~g~e~~-s~~---------------------~~~~d~-~~~~~~gdGa~A 163 (313)
T 1zow_A 107 DQLAACSGFMYSMITAKQYVQSGDYHNILVVGADKL-SKI---------------------TDLTDR-STAVLFGDGAGA 163 (313)
T ss_dssp EEECGGGHHHHHHHHHHHHHHTTSCSCEEEEEEEEG-GGT---------------------CCTTCH-HHHTTBCEEEEE
T ss_pred EECCcCHHHHHHHHHHHHHHHCCCCCEEEEEEEccc-ccc---------------------cCcccc-cceeeeccceEE
Confidence 999999999999999999999999999999999973 221 134442 368999999999
Q ss_pred EEecchhHHHhcCCceEEE-EEEEEEcCCCCCCCCC----CCCh--------HHHHHHHHHHHHHcCCCCCCcCEEEEcc
Q 012221 294 LVMESLEHAMKRGAPIIAE-YLGGAVNCDAYHMTDP----RADG--------LGVSSCIESSLEDAGVSPEEVNYINAHA 360 (468)
Q Consensus 294 vvL~~~~~A~~~g~~i~a~-i~g~~~~~d~~~~~~~----~~~~--------~~~~~~i~~al~~Agl~~~dId~v~~h~ 360 (468)
+||++.+. +.++++. +.+.+...+..+...| ..++ ..+.++++++|+++|++++|||||++|+
T Consensus 164 ~vl~~~~~----~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~al~~agl~~~did~~~~H~ 239 (313)
T 1zow_A 164 VIIGEVSE----GRGIISYEMGSDGTGGKHLYLDKDTGKLKMNGREVFKFAVRIMGDASTRVVEKANLTSDDIDLFIPHQ 239 (313)
T ss_dssp EEEEECST----TCEEEEEEEEECGGGGGGEEECTTTCCEEECHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCSEEEECC
T ss_pred EEEEecCC----CCceeEEEEEEcCCCcCeEEecCCCCeeEeccHHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEcC
Confidence 99998653 2344442 2222222222222211 1123 3678899999999999999999999999
Q ss_pred CCCccCCHHHHHHHHHHhccC-CCceeeecccccCccccchhHHHHHHHHHHHhcCCcCCCCCCCCCCCCCCcccccccc
Q 012221 361 TSTLAGDLAEINAIKKVFKNT-TGIKINATKSMIGHCLGAAGGLEAIATVKAITTGWLHPSINQFNPEPSVEFDTVANKK 439 (468)
Q Consensus 361 ~gt~~~D~~E~~al~~~f~~~-~~~~v~s~k~~~Gh~~~AsG~~~l~~~~~~l~~~~~pp~~~~~~~~~~~~~~~~~~~~ 439 (468)
++++..|.+ .+.|+.. .+++ ..|..+||+.+|++++.+.+++ +++.+
T Consensus 240 ~~~~~~d~~-----~~~lg~~~~~~~--~~~~~~Gh~~~as~~~~L~~~~---~~~~~---------------------- 287 (313)
T 1zow_A 240 ANIRIMESA-----RERLGISKDKMS--VSVNKYGNTSAASIPLSIDQEL---KNGKL---------------------- 287 (313)
T ss_dssp SCHHHHHHH-----HHHHTCCGGGBC--CCHHHHCBCGGGHHHHHHHHHH---HTTCC----------------------
T ss_pred CCHHHHHHH-----HHHhCCCHHHHH--HhHhhhCchHHHHHHHHHHHHH---HcCCC----------------------
Confidence 999887764 4555541 2233 4689999999999999887654 33422
Q ss_pred cccCccEEEEEcccccCeeeEEEEe
Q 012221 440 QQHEVNVAISNSFGFGGHNSVVAFS 464 (468)
Q Consensus 440 ~~~~~~~~l~~s~g~gG~n~~~vl~ 464 (468)
.+.+.+++.+||.|.+..+++|+
T Consensus 288 --~~g~~vl~~~~G~G~t~~~~~l~ 310 (313)
T 1zow_A 288 --KDDDTIVLVGFGGGLTWGAMTIK 310 (313)
T ss_dssp --CTTCEEEEEEEETTTEEEEEEEE
T ss_pred --CCCCEEEEEEEchhhhheEEEEE
Confidence 12356788999999999999986
|
| >4egv_A Acetyl-COA acetyltransferase; NEW SUB-family, thiolase fold; 2.71A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.4e-28 Score=253.87 Aligned_cols=307 Identities=13% Similarity=0.057 Sum_probs=203.9
Q ss_pred HHHHHHHHHHHHHHcCCCCccccccccccceEEEeecCCCccchHHHHHHHHHhCCCCcCCcCcchhhhhhhHHHHhhhh
Q 012221 127 LRYCIVAGKKALEDADLGADISKKIDKERAGVLVGTGMGGLTVFSDGVQALIEKGHRKITPFFIPYAITNMGSALLAIDL 206 (468)
Q Consensus 127 ~~l~l~a~~~AL~dAgl~~~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~ia~~l 206 (468)
..|+.+|+++||+|||+ ++++++..-.|++++...... .+...........+..++..+
T Consensus 43 ~dL~a~Ai~~AL~dAGl---~p~~Vd~vI~g~~~~~~~~~~------------------~~~~~~~g~~~~~~~~va~~l 101 (520)
T 4egv_A 43 VELATEAAKAALHDCGA---DADTVARAIDTVAGTRQFEIS------------------GPASAPLGVSSNYPRSVARNI 101 (520)
T ss_dssp HHHHHHHHHHHHHHTSS---CHHHHHHHCCEEEECCC--------------------------------CCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCc---CHHHcceEEEEEeeccccccc------------------chhhhhhccccCHHHHHHHHc
Confidence 45889999999999999 666776544565554321100 000011122334467788899
Q ss_pred CCCC-cceeecccChHHHHHHHHHHHHHHhCCCCEEEEEeeccccchhhhhHhh--------------------------
Q 012221 207 GFMG-PNYSISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAIIPIGLGGFV-------------------------- 259 (468)
Q Consensus 207 gl~G-p~~~v~~acas~l~Al~~A~~~I~~G~~d~~lvgG~e~~~~p~~~~~~~-------------------------- 259 (468)
|+.+ +.++++.+|+|++.+|++|++.|++|++|++|+||+|++.+...+....
T Consensus 102 Gl~~~~~~~~~~~caSg~~av~~AA~aI~aG~advvlAgG~EsMS~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 181 (520)
T 4egv_A 102 GADPAHAVLEVIGGQSPQHLATEFGGKIAAGENDVVLIFGSENTSTLRHFSKAENKPDHSETVDGQLEDRGYGYDGIFDE 181 (520)
T ss_dssp TCCCSEEEECCSSTTHHHHHHHHHHHHHHTTSCSEEEEEEEECCC----------------------------------C
T ss_pred CCCCceEEEecCCCHHHHHHHHHHHHHHHcCCCCEEEEEEEEeccccccccccccccCccccccccccccccccchhHHH
Confidence 9987 7788999999999999999999999999999999999853221100000
Q ss_pred -----------------hcc-----cccc-----------------CCCCCCCCC--------------------CCCCC
Q 012221 260 -----------------ACR-----ALSQ-----------------RNDDPQTAS--------------------RPWDK 280 (468)
Q Consensus 260 -----------------~~~-----~l~~-----------------~~~~~~~~~--------------------rpfd~ 280 (468)
... .... ...+|+... .|+..
T Consensus 182 ~~~~~g~~~~~~~~~~~~s~~~a~~g~~~~~f~~eia~v~v~~~~~a~~np~a~~r~~~t~E~l~~l~p~~r~i~~p~~t 261 (520)
T 4egv_A 182 YTIRHGLIGAPVQYGLLENARRARLGLSVADYRLAMAELFAPFSKVAAKNPYSSAPTERSVEELLTVTASNRMIVDPYPR 261 (520)
T ss_dssp TTGGGTCCSHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHCTTSSSCCCCCHHHHHSCCSSSCEEETTEEG
T ss_pred HHHHhCCCcHHHHHHHHHHHHHHHHccccchhhhheeEEEEecccccccCccccccCCCCHHHhcccCcccccccCCccc
Confidence 000 0000 000111111 11212
Q ss_pred CCCCeeecceeEEEEecchhHHHhcCCceEEEEEEEEEcCCCCC--CCCCC-CChHHHHHHHHHHHHHcCCCCCCcCEEE
Q 012221 281 DRDGFVMGEGAGVLVMESLEHAMKRGAPIIAEYLGGAVNCDAYH--MTDPR-ADGLGVSSCIESSLEDAGVSPEEVNYIN 357 (468)
Q Consensus 281 ~~~G~v~gEGaaavvL~~~~~A~~~g~~i~a~i~g~~~~~d~~~--~~~~~-~~~~~~~~~i~~al~~Agl~~~dId~v~ 357 (468)
-.|...++|||+++||.+++.|++.|.+++++|.+++....... ...++ ..+.+...+++++|+++|++++|||++|
T Consensus 262 a~nas~isDGAAAvVL~S~e~A~~lGl~p~a~I~~~a~a~~~~~~~~~~~~~~~~~~~~~a~~~al~~agl~~~did~~E 341 (520)
T 4egv_A 262 LMVARDQVNQGAALLMMSVESARKLGVPEEKWVYLRGHADMKEPKLLERADIGASPASVTAVNEALRVAGIGLDDVAAFD 341 (520)
T ss_dssp GGCC--CCCEEEEEEEEEHHHHHHHTCCGGGCEEEEEEEEEECCCGGGCSCTTCCHHHHHHHHHHHHHHTCCGGGEEEEE
T ss_pred ccccCCCCcceEEEEEeeHHHHHHcCCCCceEEEEEEEeccCCcccccccccccChHHHHHHHHHHHHhCCCHHHCCEEE
Confidence 23556689999999999999999999999888888776543221 12222 1356788999999999999999999999
Q ss_pred EccCCCccCCHHHHHHHHHHhcc----CCCceeeecccccCccccchhHHHHHHHHHHHhcCCcCCCCCCCCCCCCCCcc
Q 012221 358 AHATSTLAGDLAEINAIKKVFKN----TTGIKINATKSMIGHCLGAAGGLEAIATVKAITTGWLHPSINQFNPEPSVEFD 433 (468)
Q Consensus 358 ~h~~gt~~~D~~E~~al~~~f~~----~~~~~v~s~k~~~Gh~~~AsG~~~l~~~~~~l~~~~~pp~~~~~~~~~~~~~~ 433 (468)
+|..++ ++..+..+.++- ..++++++++.++||+++++|+..+++++++||++..+..++ .+++.+++.
T Consensus 342 ~~dAF~-----~~~l~~~~~lG~~~~~~~~~n~~Gg~~~~Ghp~~a~g~~~~~~~v~~lr~~~~~~~L~--~~~gg~~~~ 414 (520)
T 4egv_A 342 LYSCFP-----FPVFNICDGTGLATDDPRGLTLTGGLPFFGGLGNNYSMHGIAEAVNEMRDKPGQFALV--GANGGIASK 414 (520)
T ss_dssp ECCSSS-----HHHHHHHHHHCCCTTCTTCSCSSCCHHHHCSCSSSHHHHHHHHHHHHHHHSTTCEEEE--EEEETTTTE
T ss_pred EeCCcH-----HHHHHHHHHhCCCCCCCCCcCCCcccccCCChHHHHHHHHHHHHHHHHhcCCCCceEE--eCCCCeeee
Confidence 998776 444444445542 457899999999999999999999999999999998877665 467777654
Q ss_pred c----ccccccccC----ccEEEEEcccccCeeeEEEEeec
Q 012221 434 T----VANKKQQHE----VNVAISNSFGFGGHNSVVAFSAF 466 (468)
Q Consensus 434 ~----~~~~~~~~~----~~~~l~~s~g~gG~n~~~vl~~~ 466 (468)
. +..+..+|+ ++++.+++ +|+|+++++.
T Consensus 415 ~~~~~l~~~~~~w~~~~~~~~~~~~~-----~~~~~~~~~~ 450 (520)
T 4egv_A 415 YSVGIYSTEPADWVADNSAQLQAEHD-----AQPKVAITEK 450 (520)
T ss_dssp EEEEEEESSCCCCCCCCHHHHHHHHH-----TSCCCCBCSS
T ss_pred eeEEEEcCCCCCCCCCCCCccccccc-----CCCCcccccC
Confidence 3 222222332 34454444 7788887764
|
| >1u6e_A 3-oxoacyl-[acyl-carrier-protein] synthase III; transferase; 1.85A {Mycobacterium tuberculosis} SCOP: c.95.1.2 c.95.1.2 PDB: 1u6s_A* 1m1m_A 1hzp_A* 2qnx_A* 2qnz_A* 2qo1_A* 2qx1_A* 2qo0_A* 2qny_A* 2ahb_A 2aj9_A | Back alignment and structure |
|---|
Probab=99.95 E-value=1.2e-27 Score=235.68 Aligned_cols=296 Identities=22% Similarity=0.288 Sum_probs=200.6
Q ss_pred CCcEEEEeeceeccCC-CCHHHHHHHHHcCCCCccccCCCCCCCCCCccccccCCCCCCCCCCcccc-ccCCHHHHHHHH
Q 012221 55 KKRVVITGMGLVSVFG-NDVDAYYNKLLDGESGITMIDRFDASKFPTRFGGQIRGFSAEGYIDGKND-RRLDDCLRYCIV 132 (468)
Q Consensus 55 ~~~V~ItG~g~~~p~g-~~~~~~~~~L~~G~~~i~~~~~~~~~~~~~~~~g~v~~~d~~~~i~~~~~-~~~d~~~~l~l~ 132 (468)
|.++.|+|+|+..|.. .+.+++|+.+. .+ ++|.... .-|..+.. ...++..+|+++
T Consensus 10 m~~~~I~g~g~~~P~~~~~~~~~~~~~~--~~-----~~~i~~~---------------~gi~~r~~~~~~~~~~~la~~ 67 (335)
T 1u6e_A 10 ARSVGLLSVGAYRPERVVTNDEICQHID--SS-----DEWIYTR---------------TGIKTRRFAADDESAASMATE 67 (335)
T ss_dssp CSCEEEEEEEEECCSEEEEHHHHTTSSS--CC-----HHHHHHH---------------HCCSEEEECCTTCCHHHHHHH
T ss_pred CCceEEEEEEEECCCceecHHHHHHHhC--CC-----HHHHHHh---------------cCCceEeecCCCCCHHHHHHH
Confidence 5679999999999998 56777775331 11 1110000 00222221 123568899999
Q ss_pred HHHHHHHHcCCCCccccccccccceEEEeecCCCccchHHHHHHHHHhCCCCcCCcCcchhhhhhhHHHHhhhhCCC-Cc
Q 012221 133 AGKKALEDADLGADISKKIDKERAGVLVGTGMGGLTVFSDGVQALIEKGHRKITPFFIPYAITNMGSALLAIDLGFM-GP 211 (468)
Q Consensus 133 a~~~AL~dAgl~~~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~ia~~lgl~-Gp 211 (468)
|+++||+++|+ ++++++ +|++|+..+.+ .. ...+.+++..||++ +|
T Consensus 68 A~~~al~~ag~---~~~~id----~vi~~t~~~~~---------------------~~-----~~~a~~v~~~lgl~~~~ 114 (335)
T 1u6e_A 68 ACRRALSNAGL---SAADID----GVIVTTNTHFL---------------------QT-----PPAAPMVAASLGAKGIL 114 (335)
T ss_dssp HHHHHHHHHTC---CGGGCC----EEEEECSCCCC---------------------SS-----SCHHHHHHHHHTCTTSE
T ss_pred HHHHHHHHcCC---CHHHCC----EEEEEcCCCCC---------------------CC-----ChHHHHHHHHhCCCCCc
Confidence 99999999999 556666 78888764321 11 12477899999998 59
Q ss_pred ceeecccChHHHHHHHHHHHHHHhCCCCEEEEEeeccccchhhhhHhhhccccccCCCCCCCCCCCCCCCCCCeeeccee
Q 012221 212 NYSISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWDKDRDGFVMGEGA 291 (468)
Q Consensus 212 ~~~v~~acas~l~Al~~A~~~I~~G~~d~~lvgG~e~~~~p~~~~~~~~~~~l~~~~~~~~~~~rpfd~~~~G~v~gEGa 291 (468)
+++|+++|+|++.||..|+++|++|++|.+||+|+|... + ..+|+| ..+++++||||
T Consensus 115 ~~~v~~aC~s~~~al~~A~~~i~~g~~~~vLv~g~e~~s-~---------------------~~~~~d-~~~~~~~gDGA 171 (335)
T 1u6e_A 115 GFDLSAGAAGFGYALGAAADMIRGGGAATMLVVGTEKLS-P---------------------TIDMYD-RGNCFIFADGA 171 (335)
T ss_dssp EEEEECGGGHHHHHHHHHHHHHHHTSCSSEEEEEEEECG-G---------------------GCCTTC-TTTTTTBCEEE
T ss_pred EeeeccccHHHHHHHHHHHHHHHcCCCCEEEEEEEcccc-c---------------------ccCccc-cccceEecccc
Confidence 999999999999999999999999999999999999732 1 023444 35799999999
Q ss_pred EEEEecchhHHHhcCCceEEEEEEE-EEcCCCCCCC--------CC-------CCCh--------HHHHHHHHHHHHHcC
Q 012221 292 GVLVMESLEHAMKRGAPIIAEYLGG-AVNCDAYHMT--------DP-------RADG--------LGVSSCIESSLEDAG 347 (468)
Q Consensus 292 aavvL~~~~~A~~~g~~i~a~i~g~-~~~~d~~~~~--------~~-------~~~~--------~~~~~~i~~al~~Ag 347 (468)
+++||++.+. ++ ++..+.+. +...+..+.. .| ..++ ..+.++++++|+++|
T Consensus 172 ~A~vl~~~~~---~~--i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~al~~ag 246 (335)
T 1u6e_A 172 AAVVVGETPF---QG--IGPTVAGSDGEQADAIRQDIDWITFAQNPSGPRPFVRLEGPAVFRWAAFKMGDVGRRAMDAAG 246 (335)
T ss_dssp EEEEEEECSS---CC--BCCCEEEECGGGGGGEEESSCHHHHHTSTTSCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EEEEEEecCC---CC--eeEEEEEEcCCcccceeecCCccCcCCCccCccceEEEcCHHHHHHHHHHHHHHHHHHHHHcC
Confidence 9999998653 22 33333332 1111111000 00 1123 366789999999999
Q ss_pred CCCCCcCEEEEccCCCccCCHHHHHHHHHHhccCCCceeeecccccCccccchhHHHHHHHHHHHhcCCcCCCCCCCCCC
Q 012221 348 VSPEEVNYINAHATSTLAGDLAEINAIKKVFKNTTGIKINATKSMIGHCLGAAGGLEAIATVKAITTGWLHPSINQFNPE 427 (468)
Q Consensus 348 l~~~dId~v~~h~~gt~~~D~~E~~al~~~f~~~~~~~v~s~k~~~Gh~~~AsG~~~l~~~~~~l~~~~~pp~~~~~~~~ 427 (468)
++++|||||++|+++++..|. +.+.|+-...-.+...+..+||+.+|+..+.+..+ ++.+.+
T Consensus 247 l~~~dId~~~~H~~~~~~~~~-----~~~~lg~~~~~~~~~~~~~~Gnt~sAs~~~~L~~~---~~~~~~---------- 308 (335)
T 1u6e_A 247 VRPDQIDVFVPHQANSRINEL-----LVKNLQLRPDAVVANDIEHTGNTSAASIPLAMAEL---LTTGAA---------- 308 (335)
T ss_dssp CCGGGCCEEEECCSCHHHHHH-----HHHHHTCCTTCEECCTHHHHCBCGGGHHHHHHHHH---HHHTSS----------
T ss_pred CCHHHCCEEEECCCCHHHHHH-----HHHHcCCCchhhhhhhhhhhCcHHHHHHHHHHHHH---HHcCCC----------
Confidence 999999999999999988665 34455542221333446889999999865422222 222211
Q ss_pred CCCCcccccccccccCccEEEEEcccccCeeeEEEEee
Q 012221 428 PSVEFDTVANKKQQHEVNVAISNSFGFGGHNSVVAFSA 465 (468)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~l~~s~g~gG~n~~~vl~~ 465 (468)
.+.+.+++++||+|+++.++||+-
T Consensus 309 --------------~~g~~~l~~~~G~G~t~~~~vl~~ 332 (335)
T 1u6e_A 309 --------------KPGDLALLIGYGAGLSYAAQVVRM 332 (335)
T ss_dssp --------------CTTCEEEEEEEETTTEEEEEEEEC
T ss_pred --------------CCCCEEEEEEEehhheeEEEEEEe
Confidence 123578889999999999999975
|
| >2x3e_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; HED, transferase, acyltransferase, lipid synthesis, multifun enzyme; 1.81A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.94 E-value=2e-26 Score=226.36 Aligned_cols=289 Identities=19% Similarity=0.242 Sum_probs=202.0
Q ss_pred cEEEEeeceeccCC-CCHHHHHHHHHcCCCCccccCCCCCCCCCCccccccCCCCCCCCCCccccccCCHHHHHHHHHHH
Q 012221 57 RVVITGMGLVSVFG-NDVDAYYNKLLDGESGITMIDRFDASKFPTRFGGQIRGFSAEGYIDGKNDRRLDDCLRYCIVAGK 135 (468)
Q Consensus 57 ~V~ItG~g~~~p~g-~~~~~~~~~L~~G~~~i~~~~~~~~~~~~~~~~g~v~~~d~~~~i~~~~~~~~d~~~~l~l~a~~ 135 (468)
++.|+|+|+..|.. .+.+++++.+.. + ++|-.. . .+ |..+.....++..+|+++|++
T Consensus 5 ~~~I~g~g~~~P~~~~~~~~~~~~~~~--~-----~~~i~~-----~----~G------i~~R~~~~~~~~~~la~~Aa~ 62 (331)
T 2x3e_A 5 AAVVCGLGSYLPEAVLSNDMLAAELDT--S-----DAWISS-----R----TG------VRQRHIAGDLGSGDLALRAAS 62 (331)
T ss_dssp EEEEEEEEEECCSCEEEHHHHHHHTTC--C-----HHHHHH-----H----HC------CCEEECCTTCCHHHHHHHHHH
T ss_pred eeEEEEEEEECCCcEecHHHHHHHhCC--C-----HHHHHH-----h----hC------ceEEEecCCCCHHHHHHHHHH
Confidence 69999999999998 577888876421 1 111000 0 00 111111111568899999999
Q ss_pred HHHHHcCCCCccccccccccceEEEeecCCCccchHHHHHHHHHhCCCCcCCcCcchhhhhhhHHHHhhhhCCC-Cccee
Q 012221 136 KALEDADLGADISKKIDKERAGVLVGTGMGGLTVFSDGVQALIEKGHRKITPFFIPYAITNMGSALLAIDLGFM-GPNYS 214 (468)
Q Consensus 136 ~AL~dAgl~~~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~ia~~lgl~-Gp~~~ 214 (468)
+||+++|+ ++++ .|++++..+.. ..+ ..+.+++..||++ +|+++
T Consensus 63 ~al~~ag~-----~~id----~vi~~t~~~~~---------------------~~p-----~~a~~v~~~lgl~~~~~~~ 107 (331)
T 2x3e_A 63 AALASAGL-----ERVD----AVVLATSTGDF---------------------CCP-----ATAPRVAARLGLVGALAFD 107 (331)
T ss_dssp HHHHHHTC-----SCCS----EEEEECSSCSE---------------------EES-----CSHHHHHHHTTCTTSEEEE
T ss_pred HHHHhCCc-----ccCC----EEEEEeCCCCC---------------------CCC-----hHHHHHHHHhCCCCCcEEE
Confidence 99999998 2344 67878754211 011 2478899999998 79999
Q ss_pred ecccChHHHHHHHHHHHHHHhCCCCEEEEEeeccccchhhhhHhhhccccccCCCCCCCCCCCCCCCCCCeeecceeEEE
Q 012221 215 ISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWDKDRDGFVMGEGAGVL 294 (468)
Q Consensus 215 v~~acas~l~Al~~A~~~I~~G~~d~~lvgG~e~~~~p~~~~~~~~~~~l~~~~~~~~~~~rpfd~~~~G~v~gEGaaav 294 (468)
|+++|+|++.||..|+++|++|++|.+||+|+|. .++.. . |+...+|+++||||+++
T Consensus 108 v~~aCas~~~Al~~A~~~i~~g~~~~vLv~g~e~-~s~~~----------~------------~~d~~~~~~~GdGA~A~ 164 (331)
T 2x3e_A 108 LSAAATGFVYGLASVGSLISAGLADSALLVGVDT-FSHTL----------D------------PADRSTRALFGDGAGAV 164 (331)
T ss_dssp EECGGGHHHHHHHHHHHHHHTTSCSEEEEEEEEC-GGGGS----------C------------TTCHHHHHHBCCEEEEE
T ss_pred EcCcChHHHHHHHHHHHHHHcCCCCEEEEEEeec-cccCC----------C------------ccccccceeeccccEEE
Confidence 9999999999999999999999999999999997 33321 0 12234689999999999
Q ss_pred EecchhHHHhcCCceEEEEEEEEEcCCCC---CCCCCC----------------CCh--------HHHHHHHHHHHHHcC
Q 012221 295 VMESLEHAMKRGAPIIAEYLGGAVNCDAY---HMTDPR----------------ADG--------LGVSSCIESSLEDAG 347 (468)
Q Consensus 295 vL~~~~~A~~~g~~i~a~i~g~~~~~d~~---~~~~~~----------------~~~--------~~~~~~i~~al~~Ag 347 (468)
||++.+.| ++.++++.. ...|+. .+..|. .++ ..+.++++++|+++|
T Consensus 165 vL~~~~~a--~~~~i~~~~----~~~dg~~~~~~~~p~~~~~~p~~~~~~~~~~~~g~~v~~~~~~~~~~~i~~aL~~ag 238 (331)
T 2x3e_A 165 VLRAGDAE--EEGALLAFD----LGSDGHQFDLLMTPAVSRAERSSGQASNYFRMDGKAVFGQAVTQMSDSVRRVLDRVG 238 (331)
T ss_dssp EEEEECTT--STTBEEEEE----EEECGGGTTSEEEECCCHHHHHHTCCCCCCEECHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EEEecCCC--CCCceEEEE----EEEcCCCCCeEEecCCCCCCCCccCcCceEEecCHHHHHHHHHHHHHHHHHHHHHcC
Confidence 99987654 344555433 333332 111111 123 567889999999999
Q ss_pred CCCCCcCEEEEccCCCccCCHHHHHHHHHHhcc-CCCceeeecccccCccccchhHHHHHHHHHHHhcCCcCCCCCCCCC
Q 012221 348 VSPEEVNYINAHATSTLAGDLAEINAIKKVFKN-TTGIKINATKSMIGHCLGAAGGLEAIATVKAITTGWLHPSINQFNP 426 (468)
Q Consensus 348 l~~~dId~v~~h~~gt~~~D~~E~~al~~~f~~-~~~~~v~s~k~~~Gh~~~AsG~~~l~~~~~~l~~~~~pp~~~~~~~ 426 (468)
++++|||||++|+++++..|. +.+.++- .++++. .+..+||+.+|+..+.+..+ ++++.+
T Consensus 239 l~~~did~~~~H~~~~~~~d~-----~~~~lg~~~~~~~~--~~~~~Gnt~sAs~~~~L~~~---~~~~~~--------- 299 (331)
T 2x3e_A 239 WQASDLHHLVPHQANTRILAA-----VADQLDLPVERVVS--NIAEVGNTVAASIPLALAHG---LRQGIL--------- 299 (331)
T ss_dssp CCGGGCSEEEECCCCHHHHHH-----HHHHHTCCGGGBCC--CHHHHCBCGGGHHHHHHHHH---HHTTCS---------
T ss_pred CCHHHCCEEEEcCCCHHHHHH-----HHHHcCCCHHHHhh--hHhhhCcHHHHHHHHHHHHH---HHhCCC---------
Confidence 999999999999999988765 4455554 123332 45789999999988766544 344432
Q ss_pred CCCCCcccccccccccCccEEEEEcccccCeeeEEEEee
Q 012221 427 EPSVEFDTVANKKQQHEVNVAISNSFGFGGHNSVVAFSA 465 (468)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~l~~s~g~gG~n~~~vl~~ 465 (468)
.+-+.++..+||.|.+..+++|+-
T Consensus 300 ---------------~~G~~vll~~~G~G~~~~~~~l~~ 323 (331)
T 2x3e_A 300 ---------------RDGGNMVLTGFGAGLTWGSVALRW 323 (331)
T ss_dssp ---------------CTTCEEEEEEEETTTEEEEEEEEC
T ss_pred ---------------CCCCEEEEEEEeHHhhheeeEEEE
Confidence 112467889999999999999964
|
| >1u0m_A Putative polyketide synthase; type III polyketide synthase, PKS, bacterial, thiolase fold, beta-alpha-beta-alpha fold, catalytic triad; HET: 15P; 2.22A {Streptomyces coelicolor} SCOP: c.95.1.2 c.95.1.2 | Back alignment and structure |
|---|
Probab=99.94 E-value=6e-27 Score=234.42 Aligned_cols=311 Identities=14% Similarity=0.105 Sum_probs=208.8
Q ss_pred EEEEeeceeccCC-CCHHHHHHHHHcCCCCccccCCC-----CCCCCCCcc-ccccCCCCCCCCCCccccccCCHHHHHH
Q 012221 58 VVITGMGLVSVFG-NDVDAYYNKLLDGESGITMIDRF-----DASKFPTRF-GGQIRGFSAEGYIDGKNDRRLDDCLRYC 130 (468)
Q Consensus 58 V~ItG~g~~~p~g-~~~~~~~~~L~~G~~~i~~~~~~-----~~~~~~~~~-~g~v~~~d~~~~i~~~~~~~~d~~~~l~ 130 (468)
+.|+|+|+..|.. .+.+++|+.+......... ++| ...++..++ ....+.|+..+.+++++....++..+|+
T Consensus 10 ~~I~gig~~~P~~~v~~~~l~~~~~~~~~~~~~-~~~~~~i~~~~GI~~R~~~~~~~~~~~~~~~~~r~~~~~~~~~~la 88 (382)
T 1u0m_A 10 ATLCRPSVSVPEHVITMEETLELARRRHTDHPQ-LPLALRLIENTGVRTRHIVQPIEDTLEHPGFEDRNKVYEREAKSRV 88 (382)
T ss_dssp CEECCCEEECCSEEEEHHHHHHHHHHHHTTCTT-HHHHHHHHHHTCCCEEEESSCHHHHTSCCCHHHHHHHHHHHHHHHH
T ss_pred eEEEEEEEeCCCcccCHHHHHHHHHHhccChhh-HHHHHHHHHhcCCCcceeecChhhhccCCChhHHHHHHHHHHHHHH
Confidence 7999999999997 6889999877543100000 000 111222221 1111112222223344444456678999
Q ss_pred HHHHHHHHHHcCCCCccccccccccceEEEeecCCCccchHHHHHHHHHhCCCCcCCcCcchhhhhhhHHHHhhhhCCCC
Q 012221 131 IVAGKKALEDADLGADISKKIDKERAGVLVGTGMGGLTVFSDGVQALIEKGHRKITPFFIPYAITNMGSALLAIDLGFMG 210 (468)
Q Consensus 131 l~a~~~AL~dAgl~~~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~ia~~lgl~G 210 (468)
++|+++||+++|+ ++++++ .|++++..+ +.++ ..+.+++..||+++
T Consensus 89 ~~Aa~~aL~~agl---~~~~id----~vi~~t~~~----------------------~~~p-----~~a~~v~~~lGl~~ 134 (382)
T 1u0m_A 89 PAVIQRALDDAEL---LATDID----VIIYVSCTG----------------------FMMP-----SLTAWLINEMGFDS 134 (382)
T ss_dssp HHHHHHHHHHHTC---CGGGCS----EEEEECSSS----------------------CCSS-----CHHHHHHHHTTCCT
T ss_pred HHHHHHHHHHhCC---CHHHCC----EEEEEecCC----------------------CCCC-----cHHHHHHHHhCCCC
Confidence 9999999999999 555665 567776421 1111 24778999999998
Q ss_pred --cceee-cccChHHHHHHHHHHHHHHhCCCCEEEEEeeccccchhhhhHhhhccccccCCCCCCCCCCCCCCCCC----
Q 012221 211 --PNYSI-STACATSNYCFYAAANHIRRGEADLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWDKDRD---- 283 (468)
Q Consensus 211 --p~~~v-~~acas~l~Al~~A~~~I~~G~~d~~lvgG~e~~~~p~~~~~~~~~~~l~~~~~~~~~~~rpfd~~~~---- 283 (468)
|+++| +++|+|++.||..|+++|++|.+|.+||+|+|.. ++. .+|+|.+++
T Consensus 135 ~~~~~~v~~~aCss~~~Al~~A~~~i~~g~~~~vLv~g~e~~-s~~---------------------~~~~d~~~~~~~~ 192 (382)
T 1u0m_A 135 TTRQIPIAQLGCAAGGAAINRAHDFCTAYPEANALIVACEFC-SLC---------------------YQPTDLGVGSLLC 192 (382)
T ss_dssp TCEEEEECSCGGGHHHHHHHHHHHHHHHSTTCEEEEEEEEEG-GGG---------------------CCTTCCSHHHHHH
T ss_pred CcceEEccCCcCHHHHHHHHHHHHHHHcCCCCEEEEEEEecc-chh---------------------cCcccCCHHHhhc
Confidence 88999 8999999999999999999999999999999973 221 134444333
Q ss_pred CeeecceeEEEEecchhHHHhcCCceEEEEEEEEE--cCCCCC------------C----CCCCCChHHHHHHHHHHHHH
Q 012221 284 GFVMGEGAGVLVMESLEHAMKRGAPIIAEYLGGAV--NCDAYH------------M----TDPRADGLGVSSCIESSLED 345 (468)
Q Consensus 284 G~v~gEGaaavvL~~~~~A~~~g~~i~a~i~g~~~--~~d~~~------------~----~~~~~~~~~~~~~i~~al~~ 345 (468)
++++||||+++||++.+. +| .+|.++.. ..++.+ + ..+......+. +++++|++
T Consensus 193 ~~lfGDGA~A~vL~~~~~---~g----~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~v~~~~~~~~~-~i~~aL~~ 264 (382)
T 1u0m_A 193 NGLFGDGIAAAVVRGRGG---TG----VRLERNGSYLIPKTEDWIMYDVKATGFHFLLDKRVPATMEPLAP-ALKELAGE 264 (382)
T ss_dssp HHHBCEEEEEEEEETTTC---SE----EEEEEEEEEECSSCTTTEEEEEETTEEEEEECTTTGGGHHHHHH-HHHHHHHT
T ss_pred cchhcCCcEEEEEeccCC---CC----cEEEEeeeEecCChHHhcCceecCCceEEEeCcHHHHHHHHHHH-HHHHHHHH
Confidence 899999999999997653 33 34555443 333321 0 11222346677 99999999
Q ss_pred cCCCCCCcCEEEEccCCCccCCHHHHHHHHHHhcc-CCCcee-eecccccCccccchhHHHHHHHHHHHhcCCcCCCCCC
Q 012221 346 AGVSPEEVNYINAHATSTLAGDLAEINAIKKVFKN-TTGIKI-NATKSMIGHCLGAAGGLEAIATVKAITTGWLHPSINQ 423 (468)
Q Consensus 346 Agl~~~dId~v~~h~~gt~~~D~~E~~al~~~f~~-~~~~~v-~s~k~~~Gh~~~AsG~~~l~~~~~~l~~~~~pp~~~~ 423 (468)
+|++++|||||++|+++++..|. +.+.++- ..++++ ...+..+||+.+|+..+.|..++ +.+.+.
T Consensus 265 agl~~~dId~v~~H~~~~~i~d~-----~~~~lgl~~~k~~~s~~~~~~~Gnt~sAsi~~~L~~~~---~~g~~~----- 331 (382)
T 1u0m_A 265 HGWDASDLDFYIVHAGGPRILDD-----LSTFLEVDPHAFRFSRATLTEYGNIASAVVLDALRRLF---DEGGVE----- 331 (382)
T ss_dssp TSCCSSCCSCCEEECSHHHHHHH-----HHHHSCSCGGGGHHHHHHHHHTCBCTTHHHHHHHHHHH---HSCCCC-----
T ss_pred cCCCHHHCCEEEECCCCHHHHHH-----HHHHcCCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHH---HhcCCC-----
Confidence 99999999999999999987664 3444543 223333 25678899999999877766554 444321
Q ss_pred CCCCCCCCcccccccccccCccEEEEEcccccCeeeEEEEee
Q 012221 424 FNPEPSVEFDTVANKKQQHEVNVAISNSFGFGGHNSVVAFSA 465 (468)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~l~~s~g~gG~n~~~vl~~ 465 (468)
+-+.++..+||.|.+..+++|+-
T Consensus 332 -------------------~Gd~vll~~~G~G~t~~~~vl~~ 354 (382)
T 1u0m_A 332 -------------------EGARGLLAGFGPGITAEMSLGCW 354 (382)
T ss_dssp -------------------SSCCCEEEEEETTTEEEEEEEEE
T ss_pred -------------------CCCEEEEEEEcccceeEEEEEEE
Confidence 11345668999999988888864
|
| >2h84_A Steely1; thiolase-fold, type III polyketide synthase, PKS, chalcone-S synthase superfamily, type I PKS; HET: P6G; 2.90A {Dictyostelium discoideum} | Back alignment and structure |
|---|
Probab=99.93 E-value=5e-26 Score=227.35 Aligned_cols=318 Identities=14% Similarity=0.074 Sum_probs=209.6
Q ss_pred CcEEEEeeceeccCC-CCHHHHHHHHHcCCCCccccCCC-----CCCCCCCcccc-ccCCCCCCCC-CCccccccC----
Q 012221 56 KRVVITGMGLVSVFG-NDVDAYYNKLLDGESGITMIDRF-----DASKFPTRFGG-QIRGFSAEGY-IDGKNDRRL---- 123 (468)
Q Consensus 56 ~~V~ItG~g~~~p~g-~~~~~~~~~L~~G~~~i~~~~~~-----~~~~~~~~~~g-~v~~~d~~~~-i~~~~~~~~---- 123 (468)
++|.|+|+|+..|.. .+.+++|+.+....+.-.+..+| ...++..++.. .-..|++.++ ++..+...+
T Consensus 12 ~~v~I~g~g~~~P~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~Gi~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (374)
T 2h84_A 12 NNSFVLGIGISVPGEPISQQSLKDSISNDFSDKAETNEKVKRIFEQSQIKTRHLVRDYTKPENSIKFRHLETITDVNNQF 91 (374)
T ss_dssp CCCEEEEEEEECSSSCEEHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCCCEECCSSCTTSGGGCGGGGGGCCHHHHHHHH
T ss_pred CCeEEEEEEEeCCCcccCHHHHHHHHHHhhccChHHHHHHHHHHHhCCcCcceeecCccccccccccCChHHHHHHHHHH
Confidence 469999999999998 67899998875422110000000 11122111110 0012344433 344454445
Q ss_pred -CHHHHHHHHHHHHHHHHcCCCCccccccccccceEEEeecCCCccchHHHHHHHHHhCCCCcCCcCcchhhhhhhHHHH
Q 012221 124 -DDCLRYCIVAGKKALEDADLGADISKKIDKERAGVLVGTGMGGLTVFSDGVQALIEKGHRKITPFFIPYAITNMGSALL 202 (468)
Q Consensus 124 -d~~~~l~l~a~~~AL~dAgl~~~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~i 202 (468)
++..+|+++|+++||+++|+ ++++++ ++++++..+ +..+ ..+.++
T Consensus 92 ~~~~~~la~~Aa~~al~~ag~---~~~~id----~vi~~t~~~----------------------~~~p-----~~a~~v 137 (374)
T 2h84_A 92 KKVVPDLAQQACLRALKDWGG---DKGDIT----HIVSVTSTG----------------------IIIP-----DVNFKL 137 (374)
T ss_dssp HHHHHHHHHHHHHHHHHHHCS---CGGGCC----EEEEEESSC----------------------CCSS-----CHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCC---CHHHCC----EEEEEeeCC----------------------CCCC-----cHHHHH
Confidence 78899999999999999999 566666 677787531 1111 247789
Q ss_pred hhhhCCCC--cceeec-ccChHHHHHHHHHHHHHHhCCCCEEEEEeeccccchhhhhHhhhccccccCCCCCCCCCCCCC
Q 012221 203 AIDLGFMG--PNYSIS-TACATSNYCFYAAANHIRRGEADLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWD 279 (468)
Q Consensus 203 a~~lgl~G--p~~~v~-~acas~l~Al~~A~~~I~~G~~d~~lvgG~e~~~~p~~~~~~~~~~~l~~~~~~~~~~~rpfd 279 (468)
+..||+++ |++.|. ++|+|++.||..|+++|++|.+|.|||+|+|.. ++.. ..|.|
T Consensus 138 ~~~lGl~~~~~~~~v~~~aCss~~~al~~A~~~i~~g~~~~vLv~g~e~~-s~~~--------------------~~~~d 196 (374)
T 2h84_A 138 IDLLGLNKDVERVSLNLMGCLAGLSSLRTAASLAKASPRNRILVVCTEVC-SLHF--------------------SNTDG 196 (374)
T ss_dssp HHHHTCCTTCEEEEEESCGGGHHHHHHHHHHHHHTTCTTCEEEEEEEECC-GGGC--------------------CCSSS
T ss_pred HHHcCcCCCCceEEecCCcCHHHHHHHHHHHHHHHcCCCCEEEEEEEEec-chhh--------------------cCCCC
Confidence 99999998 889996 899999999999999999999999999999973 2210 01112
Q ss_pred CC--CCCeeecceeEEEEecchhHHHhcCCceEEEEEEEEEcC--CCC------------CC----CCCCCChHHHHHHH
Q 012221 280 KD--RDGFVMGEGAGVLVMESLEHAMKRGAPIIAEYLGGAVNC--DAY------------HM----TDPRADGLGVSSCI 339 (468)
Q Consensus 280 ~~--~~G~v~gEGaaavvL~~~~~A~~~g~~i~a~i~g~~~~~--d~~------------~~----~~~~~~~~~~~~~i 339 (468)
.+ .+++++||||+|+||++.+.+..++ ++ +|.+.+... ++. ++ ..+......+.+++
T Consensus 197 r~~~~~~~lfGDGA~A~vL~~~~~~~~~~--~~-~l~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~v~~~~~~~~~~~i 273 (374)
T 2h84_A 197 GDQMVASSIFADGSAAYIIGCNPRIEETP--LY-EVMCSINRSFPNTENAMVWDLEKEGWNLGLDASIPIVIGSGIEAFV 273 (374)
T ss_dssp HHHHHHHHHBCCEEEEEEEESSCCTTCCC--CE-EEEEEEEEECSSCTTSEEEEEETTEEEEEECTTHHHHHHHHHHHHH
T ss_pred HHHHhhhhhhccCcEEEEEecCCCcccCC--ce-eEEeeeeEEeCCCcccceeEEecCcEEEEeCchHHHHHHHHHHHHH
Confidence 11 1488999999999999877653232 44 677665431 111 00 00001124677899
Q ss_pred HHHHHHcC------CCCCCcCEEEEccCCCccCCHHHHHHHHHHhcc-CCCceee-ecccccCccccchhHHHHHHHHHH
Q 012221 340 ESSLEDAG------VSPEEVNYINAHATSTLAGDLAEINAIKKVFKN-TTGIKIN-ATKSMIGHCLGAAGGLEAIATVKA 411 (468)
Q Consensus 340 ~~al~~Ag------l~~~dId~v~~h~~gt~~~D~~E~~al~~~f~~-~~~~~v~-s~k~~~Gh~~~AsG~~~l~~~~~~ 411 (468)
+++|+++| ++++||||| +|+++++..|.++ +.++- ..+++++ .....+||+.+|+-.+.|..++
T Consensus 274 ~~~L~~ag~~~~~~l~~~did~~-~H~~~~~i~d~~~-----~~lgl~~~k~~~s~~~~~~~Gnt~sasi~~~L~~~~-- 345 (374)
T 2h84_A 274 DTLLDKAKLQTSTAISAKDCEFL-IHTGGKSILMNIE-----NSLGIDPKQTKNTWDVYHAYGNMSSASVIFVMDHAR-- 345 (374)
T ss_dssp HHHHHHHTTTSCSCCCSSSSEEE-ECCCCHHHHHHHH-----HHTTCCGGGGHHHHHHHHHHCBCTTHHHHHHHHHHH--
T ss_pred HHHHHhcCCccccCCChhhcCEe-ECCCCHHHHHHHH-----HHcCCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHH--
Confidence 99999999 999999999 9999998766443 44543 2233332 4567789999888766665543
Q ss_pred HhcCCcCCCCCCCCCCCCCCcccccccccccCccEEEEEcccccCeeeEEEEeec
Q 012221 412 ITTGWLHPSINQFNPEPSVEFDTVANKKQQHEVNVAISNSFGFGGHNSVVAFSAF 466 (468)
Q Consensus 412 l~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~g~gG~n~~~vl~~~ 466 (468)
+.+. +-+.++..+||.|-+-.+++|+..
T Consensus 346 -~~~~--------------------------~Gd~vll~~~G~G~t~~~~ll~~~ 373 (374)
T 2h84_A 346 -KSKS--------------------------LPTYSISLAFGPGLAFEGCFLKNV 373 (374)
T ss_dssp -TCSC--------------------------CCSEEEEEEEETTTEEEEEEEEEC
T ss_pred -hhcC--------------------------CCCeEEEEEeccchhhhhhhheec
Confidence 3321 123566789999888888888753
|
| >3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana} | Back alignment and structure |
|---|
Probab=99.92 E-value=5.7e-26 Score=254.01 Aligned_cols=330 Identities=14% Similarity=0.075 Sum_probs=220.3
Q ss_pred CCCcEEEEeeceeccCC-CCHHHHHH------------HH------HcCCCCccccCCCCCCCCCCccccccCCCCCCCC
Q 012221 54 PKKRVVITGMGLVSVFG-NDVDAYYN------------KL------LDGESGITMIDRFDASKFPTRFGGQIRGFSAEGY 114 (468)
Q Consensus 54 ~~~~V~ItG~g~~~p~g-~~~~~~~~------------~L------~~G~~~i~~~~~~~~~~~~~~~~g~v~~~d~~~~ 114 (468)
++.++.|+|+|.++|.+ .+.+++++ .+ ..++++|++...++...+... ++++..+
T Consensus 600 ~~~~~~I~g~g~~~P~~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~sGI~~r~~~~~~~~~~~------~~~~~~~ 673 (979)
T 3tsy_A 600 AKGPATILAIGTATPDHCVYQSDYADYYFKVTKSEHMTALKKKFNRICDKSMIKKRYIHLTEEMLEE------HPNIGAY 673 (979)
T ss_dssp CCSCEEEEEEEEECCSCEEEHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCCCEEECSCCHHHHHH------CHHHHSS
T ss_pred ccCCceeecccCCCCCCccCHHHHHHHHHHhccccchHHHHHHHHHHHHhcCcceeeEecChhhhhc------Ccccccc
Confidence 34689999999999998 34444444 44 345556655433322211111 1222222
Q ss_pred CC----ccccccCCHHHHHHHHHHHHHHHHcCCCCccccccccccceEEEeecCCCccchHHHHHHHHHhCCCCcCCcCc
Q 012221 115 ID----GKNDRRLDDCLRYCIVAGKKALEDADLGADISKKIDKERAGVLVGTGMGGLTVFSDGVQALIEKGHRKITPFFI 190 (468)
Q Consensus 115 i~----~~~~~~~d~~~~l~l~a~~~AL~dAgl~~~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (468)
+. .++.+.++....|+++|+++||++||+ +++++| .+++++..+ +.+
T Consensus 674 ~~~~~~~r~~~~~~~~~~la~~Aa~~AL~~agl---~~~dId----~ii~~t~~~----------------------~~~ 724 (979)
T 3tsy_A 674 MAPSLNIRQEIITAEVPKLGKEAALKALKEWGQ---PKSKIT----HLVFCTTSG----------------------VEM 724 (979)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCS---CGGGCC----EEEEEESSC----------------------CCS
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCC---CHHHCC----EEEEEeeCC----------------------CCC
Confidence 33 333344445677999999999999999 566666 477776321 111
Q ss_pred chhhhhhhHHHHhhhhCCCCcc---eeecccChHHHHHHHHHHHHHHhCCCCEEEEEeeccccchhhhhHhhhccccccC
Q 012221 191 PYAITNMGSALLAIDLGFMGPN---YSISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAIIPIGLGGFVACRALSQR 267 (468)
Q Consensus 191 ~~~~~n~~a~~ia~~lgl~Gp~---~~v~~acas~l~Al~~A~~~I~~G~~d~~lvgG~e~~~~p~~~~~~~~~~~l~~~ 267 (468)
...+..++..||++++. +.++++|++++.||..|.++|++|.++.|||+|+|...... .
T Consensus 725 -----p~~a~~v~~~lGl~~~~~~~~~v~~aCsg~~~Al~~A~~~i~sG~~~~vLvvg~e~~~~~~-----------~-- 786 (979)
T 3tsy_A 725 -----PGADYKLANLLGLEPSVRRVMLYHQGCYAGGTVLRTAKDLAENNAGARVLVVCSEITVVTF-----------R-- 786 (979)
T ss_dssp -----SCHHHHHHHHHTCCTTCEEEEEESCCTTHHHHHHHHHHHHHHTSTTCEEEEEEEECTTTTC-----------C--
T ss_pred -----CcHHHHHHHHcCCCcccEEEeeeccccHhHHHHHHHHHHHHHhCCCCEEEEEEEEecchhe-----------e--
Confidence 13588899999999754 89999999999999999999999999999999999721110 0
Q ss_pred CCCCCCCCCCCCCCCCCeeecceeEEEEecchhHHHhcCCceEEEEEEEEEcCCCCCCCCCCCC----------------
Q 012221 268 NDDPQTASRPWDKDRDGFVMGEGAGVLVMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRAD---------------- 331 (468)
Q Consensus 268 ~~~~~~~~rpfd~~~~G~v~gEGaaavvL~~~~~A~~~g~~i~a~i~g~~~~~d~~~~~~~~~~---------------- 331 (468)
....+.++...+++++||||+|+||++.+.+..++..++....+.....+..+...+...
T Consensus 787 ----~~~~~~~~~~~~~~lfGDGA~A~vL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 862 (979)
T 3tsy_A 787 ----GPSEDALDSLVGQALFGDGSAAVIVGSDPDISIERPLFQLVSAAQTFIPNSAGAIAGNLREVGLTFHLWPNVPTLI 862 (979)
T ss_dssp ----CCCSSCHHHHHHHHHBCCEEEEEEEESSCCSSSCCCCEEEEEEEEEECTTCTTSEEEEEETTEEEEEECTTHHHHH
T ss_pred ----CCCccCHHHHhhhhhccCceEEEEEecCCCccccCcceEEEeeeeEEecCchhheEEEEecCceEEEEchHHHHHH
Confidence 001112222234678999999999999887766778888888777776655443322111
Q ss_pred hHHHHHHHHHHHHHcCCCCCCcCEEEEccCCCccCCHHHHHHHHHHhcc-CCCceee-ecccccCccccchhHHHHHHHH
Q 012221 332 GLGVSSCIESSLEDAGVSPEEVNYINAHATSTLAGDLAEINAIKKVFKN-TTGIKIN-ATKSMIGHCLGAAGGLEAIATV 409 (468)
Q Consensus 332 ~~~~~~~i~~al~~Agl~~~dId~v~~h~~gt~~~D~~E~~al~~~f~~-~~~~~v~-s~k~~~Gh~~~AsG~~~l~~~~ 409 (468)
...+.++++++|+++|++++||||+++|..+++..|.+| +.++- .+++..+ .....+||+.+||=.+.|..++
T Consensus 863 ~~~~~~~~~~al~~agl~~~did~~~~Hq~~~~i~~~~~-----~~lgl~~~k~~~~~~~l~~~GNtssasi~~~L~~~~ 937 (979)
T 3tsy_A 863 SENVEKCLTQAFDPLGISDWNSLFWIAHPGGPAILDAVE-----AKLNLDKKKLEATRHVLSEYGNMSSACVLFILDEMR 937 (979)
T ss_dssp HHHHHHHHHHHHGGGTCCCGGGSEEEECCSCHHHHHHHH-----HHHTCCTTTTHHHHHHHHHHCBCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCCCCcccceEEECCCChHHHHHHH-----HHcCCChHHHHHHHHHHHHcCCcchhhHHHHHHHHH
Confidence 123678999999999999999999999999987766544 33332 2222221 2245679999999888887776
Q ss_pred HHHhcCCcCCCCCCCCCCCCCCcccccccccccCccEEEEEcccccCeeeEEEEee
Q 012221 410 KAITTGWLHPSINQFNPEPSVEFDTVANKKQQHEVNVAISNSFGFGGHNSVVAFSA 465 (468)
Q Consensus 410 ~~l~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~g~gG~n~~~vl~~ 465 (468)
..++.|-. + .........+..+||.|-+-.+++++-
T Consensus 938 ~~~~~G~~-----------------v---~~g~~~~~~ll~~~G~G~t~~~~~l~~ 973 (979)
T 3tsy_A 938 KKSLKGER-----------------A---TTGEGLDWGVLFGFGPGLTIETVVLHS 973 (979)
T ss_dssp HHHHHTTC-----------------S---BTTTTCSEEEEEEECGGGEEEEEEEEC
T ss_pred hhhccccc-----------------c---cCCCCcceeEEEEeCCchHHHHHHHHh
Confidence 65555411 0 011123456778999998888888874
|
| >1ted_A PKS18; thiolase fold, substrate binding tunnel, transferase; HET: MYR; 2.25A {Mycobacterium tuberculosis} SCOP: c.95.1.2 PDB: 1tee_A | Back alignment and structure |
|---|
Probab=99.90 E-value=2.8e-23 Score=208.53 Aligned_cols=253 Identities=14% Similarity=0.109 Sum_probs=178.6
Q ss_pred HHHHHHHHHHHHHHHHcCCCCccccccccccceEEEeecCCCccchHHHHHHHHHhCCCCcCCcCcchhhhhhhHHHHhh
Q 012221 125 DCLRYCIVAGKKALEDADLGADISKKIDKERAGVLVGTGMGGLTVFSDGVQALIEKGHRKITPFFIPYAITNMGSALLAI 204 (468)
Q Consensus 125 ~~~~l~l~a~~~AL~dAgl~~~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~ia~ 204 (468)
....|+++|+++||+++|+ ++++++ .+++++..+ +.. ...+.+++.
T Consensus 112 ~~~~la~~Aa~~aL~~agl---~~~~Id----~vi~~t~~~----------------------~~~-----p~~a~~v~~ 157 (393)
T 1ted_A 112 HAVPLAVDVSKRALAGLPY---RAAEIG----LLVLATSTG----------------------FIA-----PGVDVAIVK 157 (393)
T ss_dssp HHHHHHHHHHHHHHTTCCC---CGGGEE----EEEEEESSC----------------------CCS-----SCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCC---CHHHCC----EEEEEEeCC----------------------Ccc-----ChHHHHHHH
Confidence 5678999999999999999 555555 466676421 111 124678999
Q ss_pred hhCCCCc--ceee-cccChHHHHHHHHHHHHHHhCCCCEEEEEeeccccchhhhhHhhhccccccCCCCCCCCCCCCCCC
Q 012221 205 DLGFMGP--NYSI-STACATSNYCFYAAANHIRRGEADLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWDKD 281 (468)
Q Consensus 205 ~lgl~Gp--~~~v-~~acas~l~Al~~A~~~I~~G~~d~~lvgG~e~~~~p~~~~~~~~~~~l~~~~~~~~~~~rpfd~~ 281 (468)
.||++++ .+.+ +++|+|++.||..|+++|++|.+|.+||+|+|.+. +. + . |+.+
T Consensus 158 ~lGl~~~~~~~~v~~~aCas~~~Al~~A~~~i~~G~~~~vLv~g~e~~s-~~----------~-----------~-~~~~ 214 (393)
T 1ted_A 158 ELGLSPSISRVVVNFMGCAAAMNALGTATNYVRAHPAMKALVVCIELCS-VN----------A-----------V-FADD 214 (393)
T ss_dssp HHTCCTTCEEEEEESCGGGHHHHHHHHHHHHHHHSTTCEEEEEEEEECG-GG----------C-----------C-CCSS
T ss_pred HcCcCCCcceeEeccchhHHHHHHHHHHHHHHHcCCCCEEEEEEEEecc-cc----------C-----------C-CCCC
Confidence 9999885 5777 89999999999999999999999999999999732 21 0 0 2333
Q ss_pred CC----CeeecceeEEEEecchhHHHhcCCceEEEEEEEEEc--CCCCCCC----------------CCCCChHHHHHHH
Q 012221 282 RD----GFVMGEGAGVLVMESLEHAMKRGAPIIAEYLGGAVN--CDAYHMT----------------DPRADGLGVSSCI 339 (468)
Q Consensus 282 ~~----G~v~gEGaaavvL~~~~~A~~~g~~i~a~i~g~~~~--~d~~~~~----------------~~~~~~~~~~~~i 339 (468)
++ ++++||||+|+||++.+.+..++. .+++|.+++.. .|+.... .+......+.+++
T Consensus 215 r~~~~~~~lfGDGA~A~vL~~~~~~~~~~~-~~~~i~~~~~~~~~d~~~~~~~~~~~~g~~~~~g~~v~~~~~~~~~~~i 293 (393)
T 1ted_A 215 INDVVIHSLFGDGCAALVIGASQVQEKLEP-GKVVVRSSFSQLLDNTEDGIVLGVNHNGITCELSENLPGYIFSGVAPVV 293 (393)
T ss_dssp HHHHHHHHHBCEEEEEEEEEEECTTSCCCT-TCEEEEEEEEEECTTCTTSEEEEEETTEEEEEECTTHHHHHHHHHHHHH
T ss_pred HHHhhhhhhhcCccEEEEEecCCCccccCc-ceeeeeccceEEcCCchhhccceecCCCeEEecCchHHHHHHHHHHHHH
Confidence 43 899999999999998765433343 45678887554 5543210 0111234677899
Q ss_pred HHHHHHcCCCCCCcCEEEEccCCCccCCHHHHHHHHHHhcc-CCCcee-eecccccCccccchhHHHHHHHHHHHhcCCc
Q 012221 340 ESSLEDAGVSPEEVNYINAHATSTLAGDLAEINAIKKVFKN-TTGIKI-NATKSMIGHCLGAAGGLEAIATVKAITTGWL 417 (468)
Q Consensus 340 ~~al~~Agl~~~dId~v~~h~~gt~~~D~~E~~al~~~f~~-~~~~~v-~s~k~~~Gh~~~AsG~~~l~~~~~~l~~~~~ 417 (468)
+++|+++|++++|||||+.|+++++..|.+| +.++- .+++.+ ......+||+.+|+-.+.|..+ ++.+.+
T Consensus 294 ~~aL~~agl~~~dId~~~~H~~~~~i~d~~~-----~~lgl~~~k~~~s~~~~~~~GNt~sAsi~~~L~~~---~~~g~~ 365 (393)
T 1ted_A 294 TEMLWDNGLQISDIDLWAIHPGGPKIIEQSV-----RSLGISAELAAQSWDVLARFGNMLSVSLIFVLETM---VQQAES 365 (393)
T ss_dssp HHHHHHTTCCGGGCSCEEECCSCHHHHHHHH-----HHHTCCGGGGHHHHHHHHHHCBCTHHHHHHHHHHH---HHSCSS
T ss_pred HHHHHHcCCCHhHCCEEEECCCcHHHHHHHH-----HHcCCCHHHHHHHHHHHHhhCCchHhHHHHHHHHH---HhcCcc
Confidence 9999999999999999999999998876544 33443 123332 2456778998888866544333 344422
Q ss_pred CCCCCCCCCCCCCCcccccccccccCccEEEEEcccccCeeeEEEEeec
Q 012221 418 HPSINQFNPEPSVEFDTVANKKQQHEVNVAISNSFGFGGHNSVVAFSAF 466 (468)
Q Consensus 418 pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~g~gG~n~~~vl~~~ 466 (468)
.++-+.++..+||.|.+..+++|+..
T Consensus 366 -----------------------~~~Gd~vll~~~G~G~t~~~~~l~~~ 391 (393)
T 1ted_A 366 -----------------------AKAISTGVAFAFGPGVTVEGMLFDII 391 (393)
T ss_dssp -----------------------SSSSEEEEEEEEETTTEEEEEEEEEC
T ss_pred -----------------------CCCCCeEEEEEeccchhhhhhheeec
Confidence 01234677789999999999998754
|
| >3s21_A 3-oxoacyl-[ACP] synthase III; non-decarboxylative claisen condensation reaction, transfera; HET: CER; 1.70A {Xanthomonas campestris PV} PDB: 3s23_A* 3row_A 3s1z_A 3s20_A* 3fk5_A | Back alignment and structure |
|---|
Probab=99.89 E-value=1.1e-21 Score=193.42 Aligned_cols=311 Identities=18% Similarity=0.156 Sum_probs=202.6
Q ss_pred CCcEEEEeeceeccCC-CCHHHHHHHHHc-----CCCCccccCCCCCCCCCCccccccCCCCCCCCCCccccccCCHHHH
Q 012221 55 KKRVVITGMGLVSVFG-NDVDAYYNKLLD-----GESGITMIDRFDASKFPTRFGGQIRGFSAEGYIDGKNDRRLDDCLR 128 (468)
Q Consensus 55 ~~~V~ItG~g~~~p~g-~~~~~~~~~L~~-----G~~~i~~~~~~~~~~~~~~~~g~v~~~d~~~~i~~~~~~~~d~~~~ 128 (468)
.+.|.|+|+|...|.- .+.+++.+.+.. +.+. ..+. ...+...++ +..+ -.....
T Consensus 10 ~~~v~I~~~g~~lP~~~v~n~~l~~~~~~~~~~~~~~~-~~i~--~~tGi~~R~-----------~~~~-----~~~~~~ 70 (345)
T 3s21_A 10 FQNVSIAGLAHIDAPHTLTSKEINERLQPTYDRLGIKT-DVLG--DVAGIHARR-----------LWDQ-----DVQASD 70 (345)
T ss_dssp CSSEEEEEEEEEECSEEEEHHHHHHHHHHHHHHHTCCC-CHHH--HTTCCSEEE-----------ECSS-----CCCHHH
T ss_pred ecceEEEEEEEeCCCcEEcHHHHHHHHhhcccccCCCH-HHHH--HhhCceeEE-----------ECCC-----CCCHHH
Confidence 3579999999999997 678888776531 2110 0000 011111111 0001 123678
Q ss_pred HHHHHHHHHHHHcCCCCccccccccccceEEEeecCCCccchHHHHHHHHHhCCCCcCCcCcchhhhhhhHHHHhhhhCC
Q 012221 129 YCIVAGKKALEDADLGADISKKIDKERAGVLVGTGMGGLTVFSDGVQALIEKGHRKITPFFIPYAITNMGSALLAIDLGF 208 (468)
Q Consensus 129 l~l~a~~~AL~dAgl~~~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~ia~~lgl 208 (468)
|+.+|+++||+++|+ ++++++ .|++++...+. .. ...+.+++..||+
T Consensus 71 La~~Aa~~al~~ag~---~~~~Id----~vi~~t~~~~~---------------------~~-----p~~a~~v~~~lGl 117 (345)
T 3s21_A 71 AATQAARKALIDANI---GIEKIG----LLINTSVSRDY---------------------LE-----PSTASIVSGNLGV 117 (345)
T ss_dssp HHHHHHHHHHHHHTC---CGGGCC----EEEECCSCCSC---------------------SS-----SCHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHcCC---CHHHCC----EEEEEeCCCCC---------------------CC-----ChHHHHHHHHhCC
Confidence 999999999999999 666776 57887653211 11 1337788999999
Q ss_pred C--CcceeecccChHHHHHHHHHHHHHHhCCCCEEEEEeeccccchhhhhHhhhccccccCCCCCCCCCCCCCCCCCCee
Q 012221 209 M--GPNYSISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWDKDRDGFV 286 (468)
Q Consensus 209 ~--Gp~~~v~~acas~l~Al~~A~~~I~~G~~d~~lvgG~e~~~~p~~~~~~~~~~~l~~~~~~~~~~~rpfd~~~~G~v 286 (468)
+ .|.+.|+++|+|++.||..|+++|++|.++.+||+|+|.+..... +...+.++ +...|++|+....+++
T Consensus 118 ~~~~~~~~v~~aC~s~~~al~~A~~~i~~g~~~~vLvvg~e~~s~~~~---~~~~~~~~-----~~~~~~~f~~~~~~~~ 189 (345)
T 3s21_A 118 SDHCMTFDVANACLAFINGMDIAARMLERGEIDYALVVDGETANLVYE---KTLERMTS-----PDVTEEEFRNELAALT 189 (345)
T ss_dssp CTTCEEEECCCGGGHHHHHHHHHHHHHHHTSCSEEEEEEEECCHHHHH---HHHHHHTC-----TTCCHHHHHHHHGGGG
T ss_pred CCCceEEeECCcCHHHHHHHHHHHHHHHCCCCCEEEEEEEcccchhhc---cccccccC-----Cccchhhhhhhcccee
Confidence 6 699999999999999999999999999999999999998543321 11122222 2345778888888999
Q ss_pred ecceeEEEEecchhHHHhcCCceEEEEEEEEEcCCCCCCC--C-----CCCChH--------HHHHHHHHHHHHcCCCCC
Q 012221 287 MGEGAGVLVMESLEHAMKRGAPIIAEYLGGAVNCDAYHMT--D-----PRADGL--------GVSSCIESSLEDAGVSPE 351 (468)
Q Consensus 287 ~gEGaaavvL~~~~~A~~~g~~i~a~i~g~~~~~d~~~~~--~-----~~~~~~--------~~~~~i~~al~~Agl~~~ 351 (468)
+||||+++||++.+... .+. .|.+.....++.+.. . ...+++ .+.++++++|+++|++++
T Consensus 190 ~GdGA~A~vl~~~~~~~-~~~----~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~i~~~l~~~gl~~~ 264 (345)
T 3s21_A 190 LGCGAAAMVMARSELVP-DAP----RYKGGVTRSATEWNKLCRGNLDRMVTDTRLLLIEGIKLAQKTFVAAKQVLGWAVE 264 (345)
T ss_dssp BCCEEEEEEEEEGGGST-TSC----EEEEEEEEECGGGTTC-----------CHHHHHHHHHHHHHHHHHHHHHHCCCGG
T ss_pred eccceeEEEEecCCCCC-CCc----ceeeeccccCcchhhhccccCcceEEcHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 99999999999865321 122 344544444332111 1 111222 345678899999999999
Q ss_pred CcCEEEEccCCCccCCHHHHHHHHHHhcc-CCCceeeecccccCccccchhHHHHHHHHHHHhcCCcCCCCCCCCCCCCC
Q 012221 352 EVNYINAHATSTLAGDLAEINAIKKVFKN-TTGIKINATKSMIGHCLGAAGGLEAIATVKAITTGWLHPSINQFNPEPSV 430 (468)
Q Consensus 352 dId~v~~h~~gt~~~D~~E~~al~~~f~~-~~~~~v~s~k~~~Gh~~~AsG~~~l~~~~~~l~~~~~pp~~~~~~~~~~~ 430 (468)
|||++..|..+.... +.+.+.++- .+++. ..-..+||+.+|+-.+.|..++ +.+.+.
T Consensus 265 did~~v~Hq~~~~i~-----~~~~~~lgl~~ek~~--~~l~~~GNt~sasi~~~L~~~~---~~g~~~------------ 322 (345)
T 3s21_A 265 ELDQFVIHQVSRPHT-----AAFVKSFGIDPAKVM--TIFGEHGNIGPASVPIVLSKLK---ELGRLK------------ 322 (345)
T ss_dssp GCSEEEECCSCHHHH-----HHHHHHHTCCGGGBC--CCHHHHCBCGGGHHHHHHHHHH---HHTCCC------------
T ss_pred HCCEEEeCCCCHHHH-----HHHHHHcCcCHHHce--eeHhhcCchHHHHHHHHHHHHH---HcCCCC------------
Confidence 999999998877653 344444443 12222 2335679999998776665543 444331
Q ss_pred CcccccccccccCccEEEEEcccccCeeeEEEEe
Q 012221 431 EFDTVANKKQQHEVNVAISNSFGFGGHNSVVAFS 464 (468)
Q Consensus 431 ~~~~~~~~~~~~~~~~~l~~s~g~gG~n~~~vl~ 464 (468)
+-+.++..+||.|-+-.+++|+
T Consensus 323 ------------~Gd~vll~~~G~G~t~~~~~l~ 344 (345)
T 3s21_A 323 ------------KGDRIALLGIGSGLNCSMAEVV 344 (345)
T ss_dssp ------------TTCEEEEEEEETTTEEEEEEEE
T ss_pred ------------CCCEEEEEEEChhhhheEEEEE
Confidence 1135666799999888888875
|
| >4dfe_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; ssgcid, seattle structural genomics center for infectious DI transferase; 2.35A {Burkholderia xenovorans} | Back alignment and structure |
|---|
Probab=99.88 E-value=1e-21 Score=192.87 Aligned_cols=293 Identities=18% Similarity=0.272 Sum_probs=192.1
Q ss_pred cEEEEeeceeccCC-CCHHHHHHHHHcCCCCccccCCCCCCCCCCccccccCCCCCCCCCCccccccCCHHHHHHHHHHH
Q 012221 57 RVVITGMGLVSVFG-NDVDAYYNKLLDGESGITMIDRFDASKFPTRFGGQIRGFSAEGYIDGKNDRRLDDCLRYCIVAGK 135 (468)
Q Consensus 57 ~V~ItG~g~~~p~g-~~~~~~~~~L~~G~~~i~~~~~~~~~~~~~~~~g~v~~~d~~~~i~~~~~~~~d~~~~l~l~a~~ 135 (468)
+|.|+|+|...|.. .+.+++|+.+... ++...+.|-.... ++... .....-.+...|+.+|++
T Consensus 11 ~v~I~g~g~~lP~~~v~~~~l~~~l~~~--~~~~~~~~i~~rt---------gi~~r-----~~~~~~~~~~~la~~Aa~ 74 (333)
T 4dfe_A 11 YSRVLGTGSYLPPNRVTNQDLAKRLAEQ--GIETSDEWIVART---------GIHAR-----YFAEPDVTTSDLAFIASQ 74 (333)
T ss_dssp EEEEEEEEEECCSEEEEHHHHHHHHC-----CCCCHHHHHHHH---------CCSEE-----EECCTTCCHHHHHHHHHH
T ss_pred ceEEEEEEEECCCcEEcHHHHHHHhccc--cCCCCHHHhHHhc---------CceEE-----EEcCCCCCHHHHHHHHHH
Confidence 79999999999997 6899999987431 1111011100000 00000 000011347889999999
Q ss_pred HHHHHcCCCCccccccccccceEEEeecCCCccchHHHHHHHHHhCCCCcCCcCcchhhhhhhHHHHhhhhCC--CCcce
Q 012221 136 KALEDADLGADISKKIDKERAGVLVGTGMGGLTVFSDGVQALIEKGHRKITPFFIPYAITNMGSALLAIDLGF--MGPNY 213 (468)
Q Consensus 136 ~AL~dAgl~~~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~ia~~lgl--~Gp~~ 213 (468)
+||+++|+ ++++++ .|++++..+... . ...+.+++..+|+ +.|++
T Consensus 75 ~al~~ag~---~~~~Id----~vi~~t~~~~~~---------------------~-----p~~a~~v~~~lgl~~~~~~~ 121 (333)
T 4dfe_A 75 RAIEAADI---DPQSID----LIIVATSTPDFV---------------------F-----PSTACLLQNKLGIRNHGAAF 121 (333)
T ss_dssp HHHHHHTC---CGGGCC----EEEEECSSCSSS---------------------B-----SCHHHHHHHHTTCCSCCEEE
T ss_pred HHHHHcCC---CHHHCC----EEEEEeCCCCCC---------------------C-----CcHHHHHHHHhCCCCCCcEE
Confidence 99999999 666776 688887532211 1 1237788999999 56999
Q ss_pred eecccChHHHHHHHHHHHHHHhCCCCEEEEEeeccccchhhhhHhhhccccccCCCCCCCCCCCCCCCCCCeeecceeEE
Q 012221 214 SISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWDKDRDGFVMGEGAGV 293 (468)
Q Consensus 214 ~v~~acas~l~Al~~A~~~I~~G~~d~~lvgG~e~~~~p~~~~~~~~~~~l~~~~~~~~~~~rpfd~~~~G~v~gEGaaa 293 (468)
+|+.+|+|++.||..|+++|++|.++.+||+|+|.+.... -|+.+..++++||||+|
T Consensus 122 ~v~~~C~s~~~al~~A~~~i~~g~~~~vLvvg~e~~s~~~-----------------------~~~d~~~~~lfGDGA~A 178 (333)
T 4dfe_A 122 DVQAVCSGFAYAVATADSFIRSGQHRTALVIGAETFSRIL-----------------------DFKDRTTCVLFGDGAGA 178 (333)
T ss_dssp EEECGGGHHHHHHHHHHHHHHTTSCSEEEEEEEEEGGGGC-----------------------CTTCTTTTTTBCEEEEE
T ss_pred EeCcccHHHHHHHHHHHHHHHcCCCCEEEEEEeecccccc-----------------------CcccccceeeeccccEE
Confidence 9999999999999999999999999999999999732211 02223467899999999
Q ss_pred EEecchhHHHhcCCceEEEEEEEEEcCCCCC---CCCC--------------CCCh--------HHHHHHHHHHHHHcCC
Q 012221 294 LVMESLEHAMKRGAPIIAEYLGGAVNCDAYH---MTDP--------------RADG--------LGVSSCIESSLEDAGV 348 (468)
Q Consensus 294 vvL~~~~~A~~~g~~i~a~i~g~~~~~d~~~---~~~~--------------~~~~--------~~~~~~i~~al~~Agl 348 (468)
+||++.+ +..++ ++....++.. ...| ..++ ..+.++++++|+++|+
T Consensus 179 ~vl~~~~-----~~~i~----~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~i~~~l~~~gl 249 (333)
T 4dfe_A 179 VILQASD-----EPGVL----ASALHADGSHSNILCTPGNVNGGVVSGSAFLHMDGQAVFKLAVNVLEKVAVEALEKANL 249 (333)
T ss_dssp EEEEEES-----SCSEE----EEEEEECGGGGGGEEBCEEEETTEEEECCSCEECHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred EEEEEcC-----CCCeE----EEEEEEccCCcCeEEECCCCCCcccccCcceeeccHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 9999754 12232 2222222210 0000 1112 4567789999999999
Q ss_pred CCCCcCEEEEccCCCccCCHHHHHHHHHHhcc-CCCceeeecccccCccccchhHHHHHHHHHHHhcCCcCCCCCCCCCC
Q 012221 349 SPEEVNYINAHATSTLAGDLAEINAIKKVFKN-TTGIKINATKSMIGHCLGAAGGLEAIATVKAITTGWLHPSINQFNPE 427 (468)
Q Consensus 349 ~~~dId~v~~h~~gt~~~D~~E~~al~~~f~~-~~~~~v~s~k~~~Gh~~~AsG~~~l~~~~~~l~~~~~pp~~~~~~~~ 427 (468)
+++||||+..|..+.+.. +++.+.++- .+++.. ....+||+.+|+=.+.|..+ ++.+.+.
T Consensus 250 ~~~did~~~~Hq~~~~i~-----~~~~~~lgl~~~~~~~--~l~~~GNt~sasi~~~L~~~---~~~g~~~--------- 310 (333)
T 4dfe_A 250 SAEQIDWLIPHQANIRIM-----QSTCRKLGLPQERMIV--TVGEHGNTSAASIPLALDVA---VRDGRIK--------- 310 (333)
T ss_dssp CGGGCSEEEECCSCHHHH-----HHHHHHTTCCGGGBCC--CHHHHCBCGGGHHHHHHHHH---HHTTCSC---------
T ss_pred CHHHCCEEEEcCCCHHHH-----HHHHHHhCCCHHHhhh--hHHhcCchHHHHHHHHHHHH---HHcCCCC---------
Confidence 999999999998887653 344455543 122222 45568999988765555443 4444331
Q ss_pred CCCCcccccccccccCccEEEEEcccccCeeeEEEEe
Q 012221 428 PSVEFDTVANKKQQHEVNVAISNSFGFGGHNSVVAFS 464 (468)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~l~~s~g~gG~n~~~vl~ 464 (468)
+-+.++..+||.|-+-.+++++
T Consensus 311 ---------------~Gd~vll~~~G~G~t~~~~ll~ 332 (333)
T 4dfe_A 311 ---------------RGQNVLIEGVGGGFTWGASVIR 332 (333)
T ss_dssp ---------------TTCEEEEEEEETTTEEEEEEEE
T ss_pred ---------------CCCEEEEEEEchhheeEEEEEE
Confidence 1234566789999888888875
|
| >3led_A 3-oxoacyl-acyl carrier protein synthase III; structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.45A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.80 E-value=4.4e-18 Score=169.83 Aligned_cols=247 Identities=17% Similarity=0.167 Sum_probs=161.9
Q ss_pred CHHHHHHHHHHHHHHHHcCCCCccccccccccceEEEeecCCCccchHHHHHHHHHhCCCCcCCcCcchhhhhhhHHHHh
Q 012221 124 DDCLRYCIVAGKKALEDADLGADISKKIDKERAGVLVGTGMGGLTVFSDGVQALIEKGHRKITPFFIPYAITNMGSALLA 203 (468)
Q Consensus 124 d~~~~l~l~a~~~AL~dAgl~~~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~ia 203 (468)
.....|+.+|+++||+++|+ +++++| .|++++..... .++ ..+.+++
T Consensus 115 ~~~~~La~~Aa~~AL~~agi---~~~dId----~vi~~t~t~~~---------------------~~p-----~~a~~v~ 161 (392)
T 3led_A 115 SILAEMAVTAAEQAIERWGK---PRERIG----AVLCACSNMQR---------------------AYP-----AMAIEVQ 161 (392)
T ss_dssp CHHHHHHHHHHHHHHHHHCS---CGGGEE----EEEEESSCCSC---------------------SBS-----CHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHcCC---CHHHCC----EEEEEecCCCC---------------------Ccc-----HHHHHHH
Confidence 34678999999999999999 566666 57777653211 111 2477888
Q ss_pred hhhCCCCcceeecccChHHHHHHHHHHHHHHhCCCCEEEEEeeccccchhhhhHhhhccccccCCCCCCCCCCCCCCCCC
Q 012221 204 IDLGFMGPNYSISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWDKDRD 283 (468)
Q Consensus 204 ~~lgl~Gp~~~v~~acas~l~Al~~A~~~I~~G~~d~~lvgG~e~~~~p~~~~~~~~~~~l~~~~~~~~~~~rpfd~~~~ 283 (468)
..+|++.+.+.|+.+|++++.||..|.++|++|.++.+||+|+|.+ +.. + .+.| ...
T Consensus 162 ~~LGl~~~~~dv~~aC~g~~~aL~~A~~~i~~g~~~~vLvvg~E~~-S~~----------~-----------d~~d-r~t 218 (392)
T 3led_A 162 NALGLGGFAFDMNVACSSATFGLKTAADFVGGGSVDAVLMVNPEIC-SGH----------L-----------NFRD-RDS 218 (392)
T ss_dssp HHTTCCSEEEEEECGGGHHHHHHHHHHHHHHTTSCSEEEEEEEEEG-GGG----------C-----------CTTC-TTT
T ss_pred HHhCCCCeEEEECCccHHHHHHHHHHHHHHHCCCCCEEEEEeehhc-CCc----------C-----------CcCc-ccC
Confidence 8999988999999999999999999999999999999999999972 221 0 1111 234
Q ss_pred CeeecceeEEEEecchhHHHhcCCceEEEEEEEEEcCCCCCCC----------C----------CCCChH--------HH
Q 012221 284 GFVMGEGAGVLVMESLEHAMKRGAPIIAEYLGGAVNCDAYHMT----------D----------PRADGL--------GV 335 (468)
Q Consensus 284 G~v~gEGaaavvL~~~~~A~~~g~~i~a~i~g~~~~~d~~~~~----------~----------~~~~~~--------~~ 335 (468)
.+++||||+|+||++.+... .+ ..|.+....+++.... . ...++. .+
T Consensus 219 ~~lFGDGA~A~vl~~~~~~~-~~----~~i~~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~v~~~a~~~~ 293 (392)
T 3led_A 219 HFIFGDVATAAIVERADDAQ-GG----WSILGTKLKTQFSNNIRNNAGFLNRAWPEGRDKADKLFVQQGRKVFKEVVPLV 293 (392)
T ss_dssp TTTBCEEEEEEEEEEGGGCC-SS----EEEEEEEEEECCCSSEEBCCSGGGGGSGGGTTSGGGSCEECHHHHHHHHHHHH
T ss_pred CcccccccEEEEEEecCCCC-CC----CeEEEEEEEEccccccccCCCcccCCCccccccccceEEechHHHHHHHHHHH
Confidence 67899999999998754210 11 2344444333321100 0 001222 34
Q ss_pred HHHHHHHHHHcCCCCCCcCEEEEccCCCccCCHHHHHHHHHH-hcc-CCCceeeecccccCccccchhHHHHHHHHHHHh
Q 012221 336 SSCIESSLEDAGVSPEEVNYINAHATSTLAGDLAEINAIKKV-FKN-TTGIKINATKSMIGHCLGAAGGLEAIATVKAIT 413 (468)
Q Consensus 336 ~~~i~~al~~Agl~~~dId~v~~h~~gt~~~D~~E~~al~~~-f~~-~~~~~v~s~k~~~Gh~~~AsG~~~l~~~~~~l~ 413 (468)
..+++++|+++|++++|||++..|..+... .+++.+. ++- ...-.+...-..+||+.+|+=.+.|-. +
T Consensus 294 ~~~i~~~L~~~gl~~~dId~~v~Hqan~~i-----~~~~~~~llgl~~~~~k~~~~l~~~GNtssAsipl~L~~----~- 363 (392)
T 3led_A 294 SEMIIEHAREIGIDPHGLKRMWLHQANINM-----NEIIGRKVLGRDPTRDENVIILDDYANTSSAGSIIAFHK----H- 363 (392)
T ss_dssp HHHHHHHHHHTTCCGGGCSEEEECSSCHHH-----HHHHHHHHHTSCCCTTTBCCCHHHHCBCGGGHHHHHHHH----C-
T ss_pred HHHHHHHHHHcCCCHHHCcEEEEcCCCHHH-----HHHHHHHhcCCCCCHHHHHHHHhhhCccHHHHHHHHHHH----H-
Confidence 457899999999999999999999776654 2333333 341 111112223456799887765444332 2
Q ss_pred cCCcCCCCCCCCCCCCCCcccccccccccCccEEEEEcccccCeeeEEEEee
Q 012221 414 TGWLHPSINQFNPEPSVEFDTVANKKQQHEVNVAISNSFGFGGHNSVVAFSA 465 (468)
Q Consensus 414 ~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~g~gG~n~~~vl~~ 465 (468)
.+.+ .+-..++..+||.|-+-.+++|+.
T Consensus 364 ~~~~------------------------~~Gd~vll~gfG~G~t~~~~ll~~ 391 (392)
T 3led_A 364 QDDM------------------------AQGDLGLICSFGAGYSAGTVFVQK 391 (392)
T ss_dssp CTTC------------------------CTTCEEEEEEEETTTEEEEEEEEE
T ss_pred hCCC------------------------CCCCEEEEEEEChhhEeEEEEEEE
Confidence 2211 112356678999998988999875
|
| >1xpm_A 3-hydroxy-3-methylglutaryl COA synthase; HMG-COA synthase, HMGS, coenzyme A, thiolase fold, condensing enzyme; HET: HMG CAA; 1.60A {Staphylococcus aureus subsp} SCOP: c.95.1.2 c.95.1.2 PDB: 1xpl_A* 1xpk_A* 1tvz_A 1txt_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=4.7e-19 Score=177.62 Aligned_cols=265 Identities=15% Similarity=0.090 Sum_probs=170.3
Q ss_pred cEEEEeeceeccCC-CCHHHHHHHHHcCCCCccccCCCCCCCCCCccccccCCCCCCCCCCccccccCCHHHHHHHHHHH
Q 012221 57 RVVITGMGLVSVFG-NDVDAYYNKLLDGESGITMIDRFDASKFPTRFGGQIRGFSAEGYIDGKNDRRLDDCLRYCIVAGK 135 (468)
Q Consensus 57 ~V~ItG~g~~~p~g-~~~~~~~~~L~~G~~~i~~~~~~~~~~~~~~~~g~v~~~d~~~~i~~~~~~~~d~~~~l~l~a~~ 135 (468)
.|.|.|+|...|.- .+.+++.+.+ |.+. ..+. ...+...+. +.++ -.+...|++.|++
T Consensus 2 ~v~I~~ig~y~P~~~v~~~~l~~~~--~~~~-~~i~--~~~Gi~~r~-----------~~~~-----~e~~~~la~~Aa~ 60 (396)
T 1xpm_A 2 AIGIDKINFYVPKYYVDMAKLAEAR--QVDP-NKFL--IGIGQTEMA-----------VSPV-----NQDIVSMGANAAK 60 (396)
T ss_dssp CEEEEEEEEECCSEEEEHHHHHHHT--TSCH-HHHH--TTTCCSEEE-----------ECCT-----TCCHHHHHHHHHH
T ss_pred ceEEEEEEEeCCCeEecHHHHHHHh--CCCH-HHHh--hhcCceEEE-----------eCCC-----CCCHHHHHHHHHH
Confidence 48899999999987 5677766543 2210 0000 001111000 0001 1235789999999
Q ss_pred HHHHHcCCCCccccccccccceEEEeecCCCccchHHHHHHHHHhCCCCcCCcCcchhhhhhhHHHHhhhhCCCC--cce
Q 012221 136 KALEDADLGADISKKIDKERAGVLVGTGMGGLTVFSDGVQALIEKGHRKITPFFIPYAITNMGSALLAIDLGFMG--PNY 213 (468)
Q Consensus 136 ~AL~dAgl~~~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~ia~~lgl~G--p~~ 213 (468)
+||++ + ++++++ .+++|+..+.. .. ...+..++..||+++ +++
T Consensus 61 ~aL~~--~---~~~~Id----~li~~t~~~~~---------------------~~-----p~~a~~v~~~lGl~~~~~~~ 105 (396)
T 1xpm_A 61 DIITD--E---DKKKIG----MVIVATESAVD---------------------AA-----KAAAVQIHNLLGIQPFARCF 105 (396)
T ss_dssp TTCCH--H---HHHHEE----EEEEECSSCSB---------------------SS-----SCHHHHHHHHTTCCSSCEEE
T ss_pred HHHhc--C---CHHHCC----EEEEEeCCCCC---------------------CC-----CCHHHHHHHHhCCCCCceEE
Confidence 99987 4 444444 35667653210 11 124778899999974 999
Q ss_pred eecccChHHHHHHHHHHHHHHhCCCCEEEEEeeccccchhhhhHhhhccccccCCCCCCCCCCCCCCCCCCeeecceeEE
Q 012221 214 SISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWDKDRDGFVMGEGAGV 293 (468)
Q Consensus 214 ~v~~acas~l~Al~~A~~~I~~G~~d~~lvgG~e~~~~p~~~~~~~~~~~l~~~~~~~~~~~rpfd~~~~G~v~gEGaaa 293 (468)
.|..+|+|++.||..|.++|++|.++.+||+|+|. +... ++ .++++++||||+|
T Consensus 106 ~v~~aC~sg~~Al~~A~~~I~sg~~~~vLvvg~e~--s~~~-----------------------~~-~~~~~~~GdGA~A 159 (396)
T 1xpm_A 106 EMKEACYAATPAIQLAKDYLATRPNEKVLVIATDT--ARYG-----------------------LN-SGGEPTQGAGAVA 159 (396)
T ss_dssp EEESTTTTHHHHHHHHHHHHTTCTTCEEEEEEEEE--ECCC-----------------------TT-CSSGGGCEEEEEE
T ss_pred EeccccHHHHHHHHHHHHHHHcCCCCEEEEEeehh--hccc-----------------------cC-CCCCcccccceEE
Confidence 99999999999999999999999999999999995 2211 11 1368899999999
Q ss_pred EEecchhHHHhcCCceEEEEEEEEEcC-CCCCCCCCCC------ChHH--------HHHHHHHHHHHcCCCCCCcCEEEE
Q 012221 294 LVMESLEHAMKRGAPIIAEYLGGAVNC-DAYHMTDPRA------DGLG--------VSSCIESSLEDAGVSPEEVNYINA 358 (468)
Q Consensus 294 vvL~~~~~A~~~g~~i~a~i~g~~~~~-d~~~~~~~~~------~~~~--------~~~~i~~al~~Agl~~~dId~v~~ 358 (468)
+||++. ..+++...+.+... +..+...|.+ ++.. +.++++++|+++|++++|||||..
T Consensus 160 ~vl~~~-------~~i~~~~~~~g~~~~d~~~~~~p~~~~~~~~~G~~~~~~~~~~~~~~~~~~L~~agl~~~did~~~~ 232 (396)
T 1xpm_A 160 MVIAHN-------PSILALNEDAVAYTEDVYDFWRPTGHKYPLVDGALSKDAYIRSFQQSWNEYAKRQGKSLADFASLCF 232 (396)
T ss_dssp EEEEES-------CSSEEECSCCEEEECCCCSEECBTTCSSCEECHHHHHHHHHHHHHHHHHHHHHHHTCCGGGCSEEEE
T ss_pred EEeccC-------CceEEEEeccccccceEEEeeccCCCCCeEEEcHHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEe
Confidence 999863 24566555544333 4443333322 4544 678899999999999999999999
Q ss_pred ccCCCccCCHHHHHHHHHHhcc-CCCc--ee---eecccccCccccchhHHHHHHHHH
Q 012221 359 HATSTLAGDLAEINAIKKVFKN-TTGI--KI---NATKSMIGHCLGAAGGLEAIATVK 410 (468)
Q Consensus 359 h~~gt~~~D~~E~~al~~~f~~-~~~~--~v---~s~k~~~Gh~~~AsG~~~l~~~~~ 410 (468)
|+++++..|......+....+- .+.+ ++ ......+||+.+||-.+.|..++.
T Consensus 233 H~~~~~~~~~~~~~l~~~~~~~~~e~~~~~~~~s~~~~~~~GN~~saSi~l~L~~~l~ 290 (396)
T 1xpm_A 233 HVPFTKMGKKALESIIDNADETTQERLRSGYEDAVDYNRYVGNIYTGSLYLSLISLLE 290 (396)
T ss_dssp CCSSHHHHHHHHHTTGGGSCHHHHHHHHHHHHHHTTGGGGTCCCGGGHHHHHHHHHHH
T ss_pred cCCchHHHHHHHHHHHhhcccCCHHHHHHHhhhhhhhhhhcCchHHHHHHHHHHHHHH
Confidence 9999987776542221110000 0000 01 122367899999987777766543
|
| >3a5r_A Benzalacetone synthase; chalcone synthase, type III polyketide synthase, transferase, acyltransferase; HET: HC4; 1.60A {Rheum palmatum} PDB: 3a5q_A* 3a5s_A | Back alignment and structure |
|---|
Probab=99.77 E-value=2.1e-18 Score=172.61 Aligned_cols=327 Identities=13% Similarity=0.080 Sum_probs=199.4
Q ss_pred CCcEEEEeeceeccCC-CCHHHHHHHHHcCC-C-Cccc---cCCC--CCCCCCCcccc--------ccCCCCCCCC-CCc
Q 012221 55 KKRVVITGMGLVSVFG-NDVDAYYNKLLDGE-S-GITM---IDRF--DASKFPTRFGG--------QIRGFSAEGY-IDG 117 (468)
Q Consensus 55 ~~~V~ItG~g~~~p~g-~~~~~~~~~L~~G~-~-~i~~---~~~~--~~~~~~~~~~g--------~v~~~d~~~~-i~~ 117 (468)
..++.|+|+|...|.- .+.+++++.+.... + ...+ ..+| ...+...++.. ....||..+. +..
T Consensus 10 ~~~~~I~gig~~~P~~~v~n~~l~~~~~~~~~~~~~~~~~~~~~~i~~~tGI~~R~~~~~~~~~~~~p~~~~~~~~~~~~ 89 (387)
T 3a5r_A 10 KKLATVMAIGTANPPNCYYQADFPDFYFRVTNSDHLINLKQKFKRLCENSRIEKRYLHVTEEILKENPNIAAYEATSLNV 89 (387)
T ss_dssp -CCEEEEEEEEECCSCEEETTTHHHHHHHHTTCTTCHHHHHHHHHHHHTTTCCEEECSCCHHHHHHCHHHHSSSSSCHHH
T ss_pred CCCcEEEEeeecCCCcccCHHHHHHHHHHhcccccchhhHHHHHHHHHhCCCCceEEecChhhhccCcccccccCCCHHH
Confidence 3469999999999997 45666666552211 0 0000 0000 11122222110 0001222211 334
Q ss_pred cccccCCHHHHHHHHHHHHHHHHcCCCCccccccccccceEEEeecCCCccchHHHHHHHHHhCCCCcCCcCcchhhhhh
Q 012221 118 KNDRRLDDCLRYCIVAGKKALEDADLGADISKKIDKERAGVLVGTGMGGLTVFSDGVQALIEKGHRKITPFFIPYAITNM 197 (468)
Q Consensus 118 ~~~~~~d~~~~l~l~a~~~AL~dAgl~~~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ 197 (468)
++...+.....|+.+|+++||+++|+ ++++++ .+++++..+. . ...
T Consensus 90 r~~~~~~~~~~La~~Aa~~aL~~ag~---~~~~Id----~li~~t~~~~----------------------~-----~p~ 135 (387)
T 3a5r_A 90 RHKMQVKGVAELGKEAALKAIKEWGQ---PKSKIT----HLIVCCLAGV----------------------D-----MPG 135 (387)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCS---CGGGCC----EEEEEESSCC----------------------E-----ESC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCC---CHHHCC----EEEEEecCCC----------------------C-----CCc
Confidence 44445567889999999999999999 556666 5777765320 0 112
Q ss_pred hHHHHhhhhCCCCc---ceeecccChHHHHHHHHHHHHHHhCCCCEEEEEeeccccchhhhhHhhhccccccCCCCCCCC
Q 012221 198 GSALLAIDLGFMGP---NYSISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTA 274 (468)
Q Consensus 198 ~a~~ia~~lgl~Gp---~~~v~~acas~l~Al~~A~~~I~~G~~d~~lvgG~e~~~~p~~~~~~~~~~~l~~~~~~~~~~ 274 (468)
.+.+++..||+++. .+.++.+|+|++.||..|.++|++|.++.|||+|+|.+ +.. +
T Consensus 136 ~a~~v~~~lGl~~~~~~~~~v~~aC~s~~~al~~A~~~i~~g~~~~vLvvg~e~~-s~~----------~---------- 194 (387)
T 3a5r_A 136 ADYQLTKLLDLDPSVKRFMFYHLGCYAGGTVLRLAKDIAENNKGARVLIVCSEMT-TTC----------F---------- 194 (387)
T ss_dssp HHHHHHHHTTCCTTCEEEEEESCCTTHHHHHHHHHHHHHHHSTTCEEEEEEEECC-TTT----------C----------
T ss_pred HHHHHHHHcCcCCCcceeeeEccccHHHHHHHHHHHHHHHhCCCCEEEEEEEecc-chh----------h----------
Confidence 47789999999875 78999999999999999999999999999999999973 210 0
Q ss_pred CCCCC----CCCCCeeecceeEEEEecchhHHHhcC-CceEEEEEEEEEcC--CCCCC------------C-C---CCCC
Q 012221 275 SRPWD----KDRDGFVMGEGAGVLVMESLEHAMKRG-APIIAEYLGGAVNC--DAYHM------------T-D---PRAD 331 (468)
Q Consensus 275 ~rpfd----~~~~G~v~gEGaaavvL~~~~~A~~~g-~~i~a~i~g~~~~~--d~~~~------------~-~---~~~~ 331 (468)
..|+| ....++++||||+|+||++.+.. + .....++.+.+... +.... . . +...
T Consensus 195 ~~~~d~~~~~~~~~~lfGDGA~A~vl~~~~~~---~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~~v~~~~ 271 (387)
T 3a5r_A 195 RGPSETHLDSMIGQAILGDGAAAVIVGADPDL---TVERPIFELVSTAQTIVPESHGAIEGHLLESGLSFHLYKTVPTLI 271 (387)
T ss_dssp CCCCSSCCSSTTHHHHBCCEEEEEEEESSCCT---TTCCCCEEEEEEEEEECTTCTTSEEEEEETTEEEEEECTTHHHHH
T ss_pred cCCCccchhhccccceeccceeEEEEecCCCc---cccCCceEEEeeeEEEeCCChHhcCceEcCCCeEEEecchHHHHH
Confidence 12222 22357899999999999875431 2 11113444433321 11000 0 0 0001
Q ss_pred hHHHHHHHHHHHHHcCCC-CCCcCEEEEccCCCccCCHHHHHHHHHHhcc-CCCceee-ecccccCccccchhHHHHHHH
Q 012221 332 GLGVSSCIESSLEDAGVS-PEEVNYINAHATSTLAGDLAEINAIKKVFKN-TTGIKIN-ATKSMIGHCLGAAGGLEAIAT 408 (468)
Q Consensus 332 ~~~~~~~i~~al~~Agl~-~~dId~v~~h~~gt~~~D~~E~~al~~~f~~-~~~~~v~-s~k~~~Gh~~~AsG~~~l~~~ 408 (468)
...+..+++++|+++|++ .+|| ++..|..+....|. +.+.++- .+++..+ .....+||+.+|+-.+.|..+
T Consensus 272 ~~~~~~~i~~~L~~~gl~d~~di-~~v~Hq~~~~i~~~-----~~~~lgl~~ek~~~s~~~l~~~GNtssAsi~~~L~~~ 345 (387)
T 3a5r_A 272 SNNIKTCLSDAFTPLNISDWNSL-FWIAHPGGPAILDQ-----VTAKVGLEKEKLKVTRQVLKDYGNMSSATVFFIMDEM 345 (387)
T ss_dssp HHHHHHHHHHHHGGGTCCCGGGS-EEEECCSCHHHHHH-----HHHHHTCCGGGGHHHHHHHHHHCBCGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCChhhe-eEEECCCCHHHHHH-----HHHHcCCChHHhHHHHHHHHhcCCcchhHHHHHHHHH
Confidence 234567899999999998 8889 89999887765333 4444443 1223322 346778999999988777766
Q ss_pred HHHH-hcCCcCCCCCCCCCCCCCCcccccccccccCccEEEEEcccccCeeeEEEEeec
Q 012221 409 VKAI-TTGWLHPSINQFNPEPSVEFDTVANKKQQHEVNVAISNSFGFGGHNSVVAFSAF 466 (468)
Q Consensus 409 ~~~l-~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~g~gG~n~~~vl~~~ 466 (468)
+..= +.|.+. +. .....++..+||.|-+-.+++|+-.
T Consensus 346 ~~~g~~~G~~~-----------------~G----~~~d~vll~~fG~G~t~~~~ll~~~ 383 (387)
T 3a5r_A 346 RKKSLENGQAT-----------------TG----EGLEWGVLFGFGPGITVETVVLRSV 383 (387)
T ss_dssp HHHHHHTTCSB-----------------TT----TTCSEEEEEEEETTTEEEEEEEEEC
T ss_pred HHhccccCCCC-----------------CC----CCcceEEEEEecCcceeeehhheec
Confidence 6443 222110 00 0114567789999988888888754
|
| >3gwa_A 3-oxoacyl-(acyl-carrier-protein) synthase III; structural genomics, synthetase; 1.60A {Burkholderia pseudomallei} PDB: 3gwe_A | Back alignment and structure |
|---|
Probab=99.77 E-value=3.7e-17 Score=162.02 Aligned_cols=297 Identities=15% Similarity=0.131 Sum_probs=185.1
Q ss_pred CCcEEEEeeceeccCC-CCHHHHHHHHHcCCCCccccCCCCCCCCCCccccccCCCCCCCCCCccccccCCHHHHHHHHH
Q 012221 55 KKRVVITGMGLVSVFG-NDVDAYYNKLLDGESGITMIDRFDASKFPTRFGGQIRGFSAEGYIDGKNDRRLDDCLRYCIVA 133 (468)
Q Consensus 55 ~~~V~ItG~g~~~p~g-~~~~~~~~~L~~G~~~i~~~~~~~~~~~~~~~~g~v~~~d~~~~i~~~~~~~~d~~~~l~l~a 133 (468)
.+.|.|+|+|...|.- .+.+++.+.+. +.+ ...+. ...++..+. +..+ -.....|+.+|
T Consensus 28 ~~~v~I~gig~~lP~~~v~n~~l~~~~~-~~~-~~~i~--~~tGI~~R~-----------~a~~-----~~~~~~La~~A 87 (365)
T 3gwa_A 28 PPRAAIADIAGHLPEQVLTNDVLAQLYP-DWP-AEKIL--AKTGIRERR-----------IAAP-----RETAADLAYEA 87 (365)
T ss_dssp -CEEEEEEEEEECCSEEEEHHHHHHHCT-TCC-HHHHH--HHHCCCEEE-----------ECCT-----TCCHHHHHHHH
T ss_pred eccEEEEEEEEeCCCcEEcHHHHHHHcc-CCC-HHHHH--HhcCccEEE-----------ECCC-----CCCHHHHHHHH
Confidence 3579999999999997 67788776541 111 00000 001111111 0011 12357899999
Q ss_pred HHHHHHHcCCCCccccccccccceEEEeecCCCccchHHHHHHHHHhCCCCcCCcCcchhhhhhhHHHHhhhhCCC--Cc
Q 012221 134 GKKALEDADLGADISKKIDKERAGVLVGTGMGGLTVFSDGVQALIEKGHRKITPFFIPYAITNMGSALLAIDLGFM--GP 211 (468)
Q Consensus 134 ~~~AL~dAgl~~~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~ia~~lgl~--Gp 211 (468)
+++||+++|+ ++++++ .|++++..+.. ..+ ..+.+++..+|++ .+
T Consensus 88 a~~aL~~ag~---~~~~Id----~vi~~t~~~~~---------------------~~p-----~~a~~v~~~lGl~~~~~ 134 (365)
T 3gwa_A 88 ARKLFAQGAV---GADQVD----FVILCTQAPDY---------------------VLP-----TSACMLQHRLGIPTHAG 134 (365)
T ss_dssp HHHHHHTTSC---CGGGCC----EEEEEESSCSC---------------------SBS-----CHHHHHHHHTTCCTTSE
T ss_pred HHHHHHHcCC---CHHHCC----EEEEEeCCCCC---------------------CCC-----cHHHHHHHHcCCCCCce
Confidence 9999999999 666776 67887753211 111 2367888899997 58
Q ss_pred ceeecccChHHHHHHHHHHHHHHhCCCCEEEEEeeccccchhhhhHhhhccccccCCCCCCCCCCCCCCCCCCeeeccee
Q 012221 212 NYSISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWDKDRDGFVMGEGA 291 (468)
Q Consensus 212 ~~~v~~acas~l~Al~~A~~~I~~G~~d~~lvgG~e~~~~p~~~~~~~~~~~l~~~~~~~~~~~rpfd~~~~G~v~gEGa 291 (468)
.+.|+.+|+|++.||..|.++|++|.++.+||+|+|.+..... +.| .....++||||
T Consensus 135 ~~~v~~~C~s~~~Al~~A~~~i~~g~~~~vLvvg~e~~s~~~~----------------------~~d-r~~~~lfGDGA 191 (365)
T 3gwa_A 135 ALDVNLGCSGYVYGLSLAKGLVETGAARCVLLLTADTYSKYLH----------------------PLD-KSVRTLFGDGA 191 (365)
T ss_dssp EEEEECSTTHHHHHHHHHHHHHHTTSCSEEEEEEEECGGGGSC----------------------TTC-HHHHTTBCCEE
T ss_pred EEEecccChHHHHHHHHHHHHHHcCCCCEEEEEEEchhhccCC----------------------ccc-cccccccccee
Confidence 9999999999999999999999999999999999998332210 001 11245899999
Q ss_pred EEEEecchhHHHhcCCceEEEEEEEEEc--------CCCCCCC-CC-------------------CCCh--------HHH
Q 012221 292 GVLVMESLEHAMKRGAPIIAEYLGGAVN--------CDAYHMT-DP-------------------RADG--------LGV 335 (468)
Q Consensus 292 aavvL~~~~~A~~~g~~i~a~i~g~~~~--------~d~~~~~-~~-------------------~~~~--------~~~ 335 (468)
+|+||++.+.. ...++....+.... ..+.... .+ ..++ ..+
T Consensus 192 aA~vl~~~~~~---~~~i~~~~~~s~g~~~~~~~~~~gg~~~p~~~~~~~~~~~~~~~~~~~~~~~m~g~~v~~~~~~~~ 268 (365)
T 3gwa_A 192 SATAVIAEHGE---LERIGPFVFGTDGRGAPNLIVKAGLFREPKSADSAREHEDASGNVRTDEHLYMNGAEVMAFSLAEV 268 (365)
T ss_dssp EEEEEEEECSS---SCSEEEEEEEECGGGGGGEEECSSSSSSCCCTGGGCCEECTTSCEECTTSEEECHHHHHHHHHHHH
T ss_pred EEEEEEecCCC---CCceEEEEEEEcCCCCCeEEecCCCcCCCCcccccccccccccccccccceEeccHHHHHHHHHHH
Confidence 99999875421 11132222111100 0010000 00 0011 344
Q ss_pred HHHHHHHHHHcCCCCCCcCEEEEccCCCccCCHHHHHHHHHHhcc-CCCceeeecccccCccccchhHHHHHHHHHHHhc
Q 012221 336 SSCIESSLEDAGVSPEEVNYINAHATSTLAGDLAEINAIKKVFKN-TTGIKINATKSMIGHCLGAAGGLEAIATVKAITT 414 (468)
Q Consensus 336 ~~~i~~al~~Agl~~~dId~v~~h~~gt~~~D~~E~~al~~~f~~-~~~~~v~s~k~~~Gh~~~AsG~~~l~~~~~~l~~ 414 (468)
.++++++|+++|++++|||++..|..+... .+.+.+.++- .+++. ..-..+||+.+|+=.+.|.. .++.
T Consensus 269 ~~~i~~~L~~~gl~~~did~~v~Hq~n~~i-----~~~~~~~Lgl~~ek~~--~~l~~~GNtssAsipl~L~~---~~~~ 338 (365)
T 3gwa_A 269 PRAADRLLALAGEPRENIDCFVLHQANRFM-----LDALRKKMKIPEHKFP--VLMEHCGNTVSSTLPLALET---MRAN 338 (365)
T ss_dssp HHHHHHHHHHHTCCGGGCSEEEECCCCHHH-----HHHHHHHHTCCGGGSC--CCCTTTCBCGGGHHHHHHHH---HHHT
T ss_pred HHHHHHHHHHcCCCHHHCCEEEEcCCCHHH-----HHHHHHHhCCCHHHHH--HHHhcccchHHHHHHHHHHH---HHHc
Confidence 567899999999999999999999876654 3444555543 12222 23457899988875544433 3455
Q ss_pred CCcCCCCCCCCCCCCCCcccccccccccCccEEEEEcccccCeeeEEEEe
Q 012221 415 GWLHPSINQFNPEPSVEFDTVANKKQQHEVNVAISNSFGFGGHNSVVAFS 464 (468)
Q Consensus 415 ~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~g~gG~n~~~vl~ 464 (468)
+.+. +-..++..+||.|-+-.++|++
T Consensus 339 g~~~------------------------~Gd~vll~~fG~G~t~~~~ll~ 364 (365)
T 3gwa_A 339 GTLA------------------------RGMRLMLLGFGVGYSWAGCLVN 364 (365)
T ss_dssp TCCC------------------------TTCEEEEEEEETTTEEEEEEEE
T ss_pred CCCC------------------------CCCEEEEEEEehhheeEEEEEE
Confidence 5331 1235666799999888888875
|
| >3il3_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, fatty acid biosynthesis, antibiotic, acyltransferase, cytoplasm, lipid synthesis; 2.70A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.4e-16 Score=155.30 Aligned_cols=240 Identities=18% Similarity=0.237 Sum_probs=162.2
Q ss_pred HHHHHHHHHHHHHHHcCCCCccccccccccceEEEeecCCCccchHHHHHHHHHhCCCCcCCcCcchhhhhhhHHHHhhh
Q 012221 126 CLRYCIVAGKKALEDADLGADISKKIDKERAGVLVGTGMGGLTVFSDGVQALIEKGHRKITPFFIPYAITNMGSALLAID 205 (468)
Q Consensus 126 ~~~l~l~a~~~AL~dAgl~~~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~ia~~ 205 (468)
...|+.+|+++||+++|+ ++++++ .|++++..+.. .. + ..+.+++..
T Consensus 58 ~~~La~~Aa~~aL~~ag~---~~~~Id----~vi~~t~~~~~---------------------~~----p-~~a~~v~~~ 104 (323)
T 3il3_A 58 VATMGFEAAKNAIEAAQI---NPQDIE----LIIVATTSHSH---------------------AY----P-SAACQVQGL 104 (323)
T ss_dssp HHHHHHHHHHHHHHHHCC---CGGGCC----EEEEECSCCSC---------------------SS----S-CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCC---CHHHCC----EEEEEeCCCCC---------------------CC----c-cHHHHHHHH
Confidence 578999999999999999 666776 68888753211 11 1 237788889
Q ss_pred hCCC-CcceeecccChHHHHHHHHHHHHHHhCCCCEEEEEeeccccchhhhhHhhhccccccCCCCCCCCCCCCCCCCCC
Q 012221 206 LGFM-GPNYSISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWDKDRDG 284 (468)
Q Consensus 206 lgl~-Gp~~~v~~acas~l~Al~~A~~~I~~G~~d~~lvgG~e~~~~p~~~~~~~~~~~l~~~~~~~~~~~rpfd~~~~G 284 (468)
+|++ .|.+.|+.+|+|++.||..|.++|++|.++.+||+|+|.+... + + +......
T Consensus 105 lGl~~~~~~~v~~~C~s~~~al~~A~~~i~~g~~~~vLvvg~e~~s~~-----------~-----------~-~~d~~~~ 161 (323)
T 3il3_A 105 LNIDDAISFDLAAACTGFVYALSVADQFIRAGKVKKALVIGSDLNSRK-----------L-----------D-ETDRSTV 161 (323)
T ss_dssp TTCSSCEEEEECCGGGHHHHHHHHHHHHHHTTSCSEEEEEEEEEGGGS-----------C-----------C-TTCTTTT
T ss_pred hCCCCccEEEECCccHHHHHHHHHHHHHHHCCCCCEEEEEEeeccccc-----------c-----------C-ccccccc
Confidence 9996 4899999999999999999999999999999999999973211 0 0 1112246
Q ss_pred eeecceeEEEEecchhHHHhcCCceEEEEEEEEEcCCCCC---CCCC------------CCCh--------HHHHHHHHH
Q 012221 285 FVMGEGAGVLVMESLEHAMKRGAPIIAEYLGGAVNCDAYH---MTDP------------RADG--------LGVSSCIES 341 (468)
Q Consensus 285 ~v~gEGaaavvL~~~~~A~~~g~~i~a~i~g~~~~~d~~~---~~~~------------~~~~--------~~~~~~i~~ 341 (468)
+++||||+|+||++.+ +..+ .++...+++.. +..| ..++ ..+.+++++
T Consensus 162 ~lfGDGA~A~vl~~~~-----~~~i----~~~~~~s~g~~~~~~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~i~~ 232 (323)
T 3il3_A 162 VLFGDGAGAVILEASE-----QEGI----ISTHLHASADKNNALVLAQPERGIEKSGYIEMQGNETFKLAVRELSNVVEE 232 (323)
T ss_dssp TTBCEEEEEEEEEEES-----SCCE----EEEEEEECCCCSCSEECCCCCTTCSSCSCCEECHHHHHHHHHHHHHHHHHH
T ss_pred cccccceEEEEEEEcC-----CCCe----EEEEEEEcCCCcceEEECCCCCCCCCCCcEEEcCHHHHHHHHHHHHHHHHH
Confidence 7899999999998754 2223 23322222211 0001 0112 234567899
Q ss_pred HHHHcCCCCCCcCEEEEccCCCccCCHHHHHHHHHHhcc-CCCceeeecccccCccccchhHHHHHHHHHHHhcCCcCCC
Q 012221 342 SLEDAGVSPEEVNYINAHATSTLAGDLAEINAIKKVFKN-TTGIKINATKSMIGHCLGAAGGLEAIATVKAITTGWLHPS 420 (468)
Q Consensus 342 al~~Agl~~~dId~v~~h~~gt~~~D~~E~~al~~~f~~-~~~~~v~s~k~~~Gh~~~AsG~~~l~~~~~~l~~~~~pp~ 420 (468)
+|+++|++++|||++..|..+... .+.+.+.++- .+++.. .-..+||+.+|+=.+.|..+ ++.+.+.
T Consensus 233 ~l~~~gl~~~did~~v~Hq~~~~i-----~~~~~~~lgl~~ek~~~--~l~~~GNt~sasi~~~L~~~---~~~g~~~-- 300 (323)
T 3il3_A 233 TLLANNLDKKDLDWLVPHQANLRI-----ITATAKKLEMDMSQVVV--TLDKYANNSAATVPVALDEA---IRDGRIQ-- 300 (323)
T ss_dssp HHHTTTCCTTTCCEEEECCSCHHH-----HHHHHHHTTCCGGGBCC--CHHHHCBCGGGHHHHHHHHH---HHTTSSC--
T ss_pred HHHHcCCCHHHCCEEEEcCCCHHH-----HHHHHHHcCcCHHHhhc--cHhhcCchHHHHHHHHHHHH---HHcCCCC--
Confidence 999999999999999999877653 3444555543 122222 23456999888766555443 4454331
Q ss_pred CCCCCCCCCCCcccccccccccCccEEEEEcccccCeeeEEEEe
Q 012221 421 INQFNPEPSVEFDTVANKKQQHEVNVAISNSFGFGGHNSVVAFS 464 (468)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~g~gG~n~~~vl~ 464 (468)
+-+.++..+||.|-+-.++|++
T Consensus 301 ----------------------~Gd~vll~~~G~G~t~~~~~l~ 322 (323)
T 3il3_A 301 ----------------------RGQLLLLEAFGGGWTWGSALVR 322 (323)
T ss_dssp ----------------------TTCEEEEEEEETTTEEEEEEEE
T ss_pred ----------------------CCCEEEEEEEehhheeEEEEEE
Confidence 1234666799999998888875
|
| >3h78_A PQS biosynthetic enzyme; PQSD, anthranilic acid, anthraniloyl-COA, transferase; HET: BE2; 1.70A {Pseudomonas aeruginosa PAO1} PDB: 3h76_A 3h77_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=4.1e-17 Score=161.17 Aligned_cols=290 Identities=16% Similarity=0.208 Sum_probs=182.3
Q ss_pred CCcEEEEeeceeccCC-CCHHHHHHHHHcCCCCccccCCCC--CCCCCCccccccCCCCCCCCCCccccccCCHHHHHHH
Q 012221 55 KKRVVITGMGLVSVFG-NDVDAYYNKLLDGESGITMIDRFD--ASKFPTRFGGQIRGFSAEGYIDGKNDRRLDDCLRYCI 131 (468)
Q Consensus 55 ~~~V~ItG~g~~~p~g-~~~~~~~~~L~~G~~~i~~~~~~~--~~~~~~~~~g~v~~~d~~~~i~~~~~~~~d~~~~l~l 131 (468)
.+++.|+|+|...|.- .+.+++.+.+ +.+ +.|- ..+...+. +..+ -.....|+.
T Consensus 23 ~~~~~I~~~g~~~P~~~v~~~~l~~~~--~~~-----~~~i~~~tGi~~R~-----------~a~~-----~~~~~~La~ 79 (359)
T 3h78_A 23 QGNPILAGLGFSLPKRQVSNHDLVGRI--NTS-----DEFIVERTGVRTRY-----------HVEP-----EQAVSALMV 79 (359)
T ss_dssp -CCCEEEEEEEECCSEEEEHHHHTTTS--SCC-----HHHHHHHHCCCEEE-----------ECCT-----TCCTHHHHH
T ss_pred CCCcEEEEEEEECCCceEcHHHHHHHh--CCC-----HHHHHHhcCceEEE-----------EcCC-----CCCHHHHHH
Confidence 4679999999999997 4666664432 111 0000 00111000 0001 012568999
Q ss_pred HHHHHHHHHcCCCCccccccccccceEEEeecCCCccchHHHHHHHHHhCCCCcCCcCcchhhhhhhHHHHhhhhCCCC-
Q 012221 132 VAGKKALEDADLGADISKKIDKERAGVLVGTGMGGLTVFSDGVQALIEKGHRKITPFFIPYAITNMGSALLAIDLGFMG- 210 (468)
Q Consensus 132 ~a~~~AL~dAgl~~~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~ia~~lgl~G- 210 (468)
+|+++||+++|+ +++++| .|++++..+.. ..+ ..+.+++..+|++.
T Consensus 80 ~Aa~~aL~~agl---~~~dId----~vi~~t~~~~~---------------------~~p-----~~a~~v~~~lGl~~~ 126 (359)
T 3h78_A 80 PAARQAIEAAGL---LPEDID----LLLVNTLSPDH---------------------HDP-----SQACLIQPLLGLRHI 126 (359)
T ss_dssp HHHHHHHHHTTC---CGGGCC----EEEEECSSCSS---------------------SBS-----CHHHHHHHHHTCCSC
T ss_pred HHHHHHHHhcCC---CHHHCC----EEEEEeCCCCC---------------------CCC-----cHHHHHHHHcCCCCC
Confidence 999999999999 666776 68888753211 111 23778888999975
Q ss_pred cceeecccChHHHHHHHHHHHHHHhCCCCEEEEEeeccccchhhhhHhhhccccccCCCCCCCCCCCCCC-CCCCeeecc
Q 012221 211 PNYSISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWDK-DRDGFVMGE 289 (468)
Q Consensus 211 p~~~v~~acas~l~Al~~A~~~I~~G~~d~~lvgG~e~~~~p~~~~~~~~~~~l~~~~~~~~~~~rpfd~-~~~G~v~gE 289 (468)
|.+.|+.+|+|++.||..|.++|++|.++.+||+|+|.+.... ++-|. ....+++||
T Consensus 127 ~~~~v~~aC~s~~~Al~~A~~~i~sG~~~~vLvvg~e~~S~~~----------------------~~~d~~~~t~~lfGD 184 (359)
T 3h78_A 127 PVLDIRAQASGLLYGLQMARGQILAGLARHVLVVCGEVLSKRM----------------------DCSDRGRNLSILLGD 184 (359)
T ss_dssp CEEEEECGGGHHHHHHHHHHHHHHTTSCSEEEEEEEEECGGGC----------------------CCSTTTHHHHTTBCE
T ss_pred cEEEECCHhHHHHHHHHHHHHHHHCCCcCEEEEEEEchhcccC----------------------Ccccccccccceecc
Confidence 8899999999999999999999999999999999999732111 00010 113467999
Q ss_pred eeEEEEecchhHHHhcCCceEEEEEEEEEcCCCC-----------CCCCC--------------CCCh--------HHHH
Q 012221 290 GAGVLVMESLEHAMKRGAPIIAEYLGGAVNCDAY-----------HMTDP--------------RADG--------LGVS 336 (468)
Q Consensus 290 GaaavvL~~~~~A~~~g~~i~a~i~g~~~~~d~~-----------~~~~~--------------~~~~--------~~~~ 336 (468)
||+|+||++.+. .+..++. +....++. ....+ ..++ ..+.
T Consensus 185 GAaA~vl~~~~~---~~~~i~~----~~~~s~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~g~~v~~~~~~~~~ 257 (359)
T 3h78_A 185 GAGAVVVSAGES---LEDGLLD----LRLGADGNYFDLLMTAAPGSASPTFLDENVLREGGGEFLMRGRPMFEHASQTLV 257 (359)
T ss_dssp EEEEEEEECCSC---SSSEEEE----EEEEECGGGGGGEEBCCSSTTSSSTTCHHHHHTTTTSCEECHHHHHHHHHHHHH
T ss_pred eeEEEEEEecCC---CCCceEE----EEEEEccCccceEEeCCCCCccCCccccccccccCCceEeccHHHHHHHHHHHH
Confidence 999999987532 1223332 22222211 00000 0022 2345
Q ss_pred HHHHHHHHHcCCCCCCcCEEEEccCCCccCCHHHHHHHHHHhcc-CCCceeeecccccCccccchhHHHHHHHHHHHhcC
Q 012221 337 SCIESSLEDAGVSPEEVNYINAHATSTLAGDLAEINAIKKVFKN-TTGIKINATKSMIGHCLGAAGGLEAIATVKAITTG 415 (468)
Q Consensus 337 ~~i~~al~~Agl~~~dId~v~~h~~gt~~~D~~E~~al~~~f~~-~~~~~v~s~k~~~Gh~~~AsG~~~l~~~~~~l~~~ 415 (468)
++++++|+++|++++|||++..|..+... .+.+.+.++- .+++.. .-..+||+.+|+=.+.|..++..
T Consensus 258 ~~i~~~L~~~gl~~~did~~v~Hq~n~~i-----~~~~~~~lgl~~ek~~~--~l~~~GNt~sAsi~l~L~~~~~~---- 326 (359)
T 3h78_A 258 RIAGEMLAAHELTLDDIDHVICHQPNLRI-----LDAVQEQLGIPQHKFAV--TVDRLGNMASASTPVTLAMFWPD---- 326 (359)
T ss_dssp HHHHHHHHHTTCCGGGCSEEEECCSCHHH-----HHHHHHHHTCCGGGBCC--CHHHHCBCGGGHHHHHHHHHGGG----
T ss_pred HHHHHHHHHcCCCHHHCCEEEECCCCHHH-----HHHHHHHhCcCHHHhhh--hhhcccchHHHHHHHHHHHHHHh----
Confidence 67899999999999999999999877654 3444555543 122322 23466999988866655544322
Q ss_pred CcCCCCCCCCCCCCCCcccccccccccCccEEEEEcccccCeeeEEEEee
Q 012221 416 WLHPSINQFNPEPSVEFDTVANKKQQHEVNVAISNSFGFGGHNSVVAFSA 465 (468)
Q Consensus 416 ~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~g~gG~n~~~vl~~ 465 (468)
+. +-+.++..+||.|-+-.+++|+-
T Consensus 327 -l~------------------------~Gd~vll~~fG~G~t~~~~ll~~ 351 (359)
T 3h78_A 327 -IQ------------------------PGQRVLVLTYGSGATWGAALYRK 351 (359)
T ss_dssp -SC------------------------TTCEEEEEEEETTTEEEEEEEEC
T ss_pred -CC------------------------CCCEEEEEEEchhhhheeeeEEe
Confidence 10 11345667899998888888874
|
| >1xes_A Dihydropinosylvin synthase; native structure, transferase; HET: 3IO; 1.70A {Pinus sylvestris} PDB: 1xet_A* 1u0u_A | Back alignment and structure |
|---|
Probab=99.75 E-value=1.3e-17 Score=167.99 Aligned_cols=331 Identities=14% Similarity=0.092 Sum_probs=201.5
Q ss_pred CCcEEEEeeceeccCC-CCHHHHHHHHHc-CCC-Ccccc---CCC--CCCCCCCccccc---cCCCCCCC-------CCC
Q 012221 55 KKRVVITGMGLVSVFG-NDVDAYYNKLLD-GES-GITMI---DRF--DASKFPTRFGGQ---IRGFSAEG-------YID 116 (468)
Q Consensus 55 ~~~V~ItG~g~~~p~g-~~~~~~~~~L~~-G~~-~i~~~---~~~--~~~~~~~~~~g~---v~~~d~~~-------~i~ 116 (468)
+.++.|+|+|...|.- .+.+++++.+.. ..+ ...++ .+| ...+...++... +.+.++++ .+.
T Consensus 36 ~~~~~I~gig~~lP~~~v~n~el~~~~~~~~~~~~~~~~~~~~~~i~~~tGI~~R~~a~~~~~~~~~p~~~~~~~~~~~~ 115 (413)
T 1xes_A 36 DGFASILAIGTANPPNAVDQSTYPDFYFRITGNEHNTELKDKFKRICERSAIKQRYMYLTEEILKKNPDVCAFVEVPSLD 115 (413)
T ss_dssp CSCEEEEEEEEECCSCEEEGGGHHHHHHHHTTCTTCHHHHHHHHHHHHTSCCCEEECSCCHHHHHTCHHHHSSSSSCCHH
T ss_pred CCCeEEEEEeecCCCCccCHHHHHHHHHHhccccchhhhHHHHHHHHhhcCcCceEEeeChhhhccCccccccccCCCHH
Confidence 3469999999999997 566777766532 101 00000 000 111222221100 00011110 012
Q ss_pred ccccccCCHHHHHHHHHHHHHHHHcCCCCccccccccccceEEEeecCCCccchHHHHHHHHHhCCCCcCCcCcchhhhh
Q 012221 117 GKNDRRLDDCLRYCIVAGKKALEDADLGADISKKIDKERAGVLVGTGMGGLTVFSDGVQALIEKGHRKITPFFIPYAITN 196 (468)
Q Consensus 117 ~~~~~~~d~~~~l~l~a~~~AL~dAgl~~~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n 196 (468)
.+..+.++....|+.+|+++||+++|+ ++++++ .+++++..+ ..+ .
T Consensus 116 ~r~~~~~~~~~~La~~Aa~~AL~~agl---~~~~Id----~li~~t~~~----------------------~~~-----p 161 (413)
T 1xes_A 116 ARQAMLAMEVPRLAKEAAEKAIQEWGQ---SKSGIT----HLIFCSTTT----------------------PDL-----P 161 (413)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCS---CGGGCC----EEEEEESCC----------------------CEE-----S
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHcCC---CHHHCC----EEEEEEeCC----------------------Ccc-----c
Confidence 233344467889999999999999999 556666 577787532 111 1
Q ss_pred hhHHHHhhhhCCCCc---ceeecccChHHHHHHHHHHHHHHhCCCCEEEEEeeccccchhhhhHhhhccccccCCCCCCC
Q 012221 197 MGSALLAIDLGFMGP---NYSISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQT 273 (468)
Q Consensus 197 ~~a~~ia~~lgl~Gp---~~~v~~acas~l~Al~~A~~~I~~G~~d~~lvgG~e~~~~p~~~~~~~~~~~l~~~~~~~~~ 273 (468)
..+.+++..||+++. .+.+..+|+|++.||..|.++|++|.+|.|||+|+|.+...+ .. |.
T Consensus 162 ~~a~~v~~~lGl~~~~~~~~~v~~aCas~~~AL~~A~~~i~~G~~~~vLvvg~E~~s~~~-----------~~----~~- 225 (413)
T 1xes_A 162 GADFEVAKLLGLHPSVKRVGVFQHGCFAGGTVLRMAKDLAENNRGARVLVICSETTAVTF-----------RG----PS- 225 (413)
T ss_dssp CHHHHHHHHHTCCTTCEEEEEESCCTTHHHHHHHHHHHHHHTSTTCCEEEEEEECTTTTC-----------CC----CC-
T ss_pred hHHHHHHHHcCcCCccchhceecCccHHHHHHHHHHHHHHHcCCCCEEEEEEehhhhhhh-----------cC----CC-
Confidence 236788999999875 789999999999999999999999999999999999732110 00 11
Q ss_pred CCCCCCCCCCCeeecceeEEEEecchhHHHhcCC-ceEEEEEEEEEcC--CCCCC------------C-CC---CCChHH
Q 012221 274 ASRPWDKDRDGFVMGEGAGVLVMESLEHAMKRGA-PIIAEYLGGAVNC--DAYHM------------T-DP---RADGLG 334 (468)
Q Consensus 274 ~~rpfd~~~~G~v~gEGaaavvL~~~~~A~~~g~-~i~a~i~g~~~~~--d~~~~------------~-~~---~~~~~~ 334 (468)
.++|+....++++||||+|+||++.+.. +. ....++.+.+... +.... . .. ......
T Consensus 226 -d~~~~~~~~~~lfGDGA~A~vl~~~~~~---~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~~v~~~~~~~ 301 (413)
T 1xes_A 226 -ETHLDSLVGQALFGDGASALIVGADPIP---QVEKACFEIVWTAQTVVPNSEGAIGGKVREVGLTFQLKGAVPDLISAN 301 (413)
T ss_dssp -TTCHHHHHHHHHBCCEEEEEEEESSCCT---TTSCCSEEEEEEEEEECTTCTTTEEEEEETTEEEEEECTTHHHHHHHH
T ss_pred -ccchhhcccceeEecccEEEEEecCCCc---cccCCceEEEeeeeEEcCCChhhcCcEEecCceEEEecccHHHHHHHH
Confidence 1345445678999999999999875431 21 1113444443321 11000 0 00 011245
Q ss_pred HHHHHHHHHHHcCCC-CCCcCEEEEccCCCccCCHHHHHHHHHHhcc-CCCceee-ecccccCccccchhHHHHHHHHHH
Q 012221 335 VSSCIESSLEDAGVS-PEEVNYINAHATSTLAGDLAEINAIKKVFKN-TTGIKIN-ATKSMIGHCLGAAGGLEAIATVKA 411 (468)
Q Consensus 335 ~~~~i~~al~~Agl~-~~dId~v~~h~~gt~~~D~~E~~al~~~f~~-~~~~~v~-s~k~~~Gh~~~AsG~~~l~~~~~~ 411 (468)
+.++++++|+++|++ .+|| ++..|..+....| ++.+.++- .+++..+ .....+||+.+|+-.+.|..++..
T Consensus 302 ~~~~i~~~L~~~gl~d~~di-~~v~Hq~~~~i~~-----~~~~~Lgl~~ek~~~s~~~l~~~GNtssAsi~~~L~~~~~~ 375 (413)
T 1xes_A 302 IENCMVEAFSQFKISDWNKL-FWVVHPGGRAILD-----RVEAKLNLDPTKLIPTRHVMSEYGNMSSACVHFILDQTRKA 375 (413)
T ss_dssp HHHHHHHHHGGGTCCCGGGS-EEEECCSCHHHHH-----HHHHHTTCCTTTTHHHHHHHHHHCBCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCccce-eEEECCCCHHHHH-----HHHHHcCCChHHhHHHHHHHHhcCcCchhhHHHHHHHHHHh
Confidence 667899999999998 8888 8999988765433 34455543 2233332 345678999999988877776644
Q ss_pred Hh-cCCcCCCCCCCCCCCCCCcccccccccccCccEEEEEcccccCeeeEEEEeec
Q 012221 412 IT-TGWLHPSINQFNPEPSVEFDTVANKKQQHEVNVAISNSFGFGGHNSVVAFSAF 466 (468)
Q Consensus 412 l~-~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~g~gG~n~~~vl~~~ 466 (468)
-+ .|.+. +. .....++..+||.|-+-.+++|+..
T Consensus 376 g~~~G~~~-----------------~G----~~~d~vll~~fG~G~t~~~~ll~~~ 410 (413)
T 1xes_A 376 SLQNGCST-----------------TG----EGLEMGVLFGFGPGLTIETVVLKSV 410 (413)
T ss_dssp HHHTTCSB-----------------TT----TTCSEEEEEEEETTTEEEEEEEEEC
T ss_pred ccccCCCC-----------------CC----CCcceEEEEEecCCcEEeEEEEEec
Confidence 32 22110 00 0114567789999988888888754
|
| >3s3l_A CERJ; acyltransferase, FABH homologue, KS III homologue, dimethyl transfer, transferase; 2.00A {Streptomyces tendae} PDB: 3t5y_A* 3t6s_A* 3t8e_A 3t5y_B* | Back alignment and structure |
|---|
Probab=99.74 E-value=7.1e-17 Score=159.44 Aligned_cols=245 Identities=15% Similarity=0.090 Sum_probs=161.7
Q ss_pred HHHHHHHHHHHHHHHHcCCCCccccccccccceEEEeecCCCccchHHHHHHHHHhCCCCcCCcCcchhhhhhhHHHHhh
Q 012221 125 DCLRYCIVAGKKALEDADLGADISKKIDKERAGVLVGTGMGGLTVFSDGVQALIEKGHRKITPFFIPYAITNMGSALLAI 204 (468)
Q Consensus 125 ~~~~l~l~a~~~AL~dAgl~~~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~ia~ 204 (468)
....|+.+|+++||+++|+ ++++++ .|++++.... .|.. . ..+.+++.
T Consensus 53 ~~~~La~~Aa~~aL~~ag~---~~~dId----~vi~~t~~~~-------------------~~d~----~--~~a~~v~~ 100 (357)
T 3s3l_A 53 APPRMAARAARAALGRGDV---DPADVS----LVLHSSLWFQ-------------------GIDL----W--PAASYVAH 100 (357)
T ss_dssp SHHHHHHHHHHHHHHHTTC---CGGGEE----EEEEECSSCC-------------------SSSS----S--CHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCC---CHHHCC----EEEEEeccCC-------------------Cccc----c--cHHHHHHH
Confidence 3678999999999999999 556666 5777764200 0110 0 13677888
Q ss_pred hhCCCC-cceeecccChHHHHHHHHHHHHHHhCCCC--EEEEEeeccccchhhhhHhhhccccccCCCCCCCCCCCCCCC
Q 012221 205 DLGFMG-PNYSISTACATSNYCFYAAANHIRRGEAD--LMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWDKD 281 (468)
Q Consensus 205 ~lgl~G-p~~~v~~acas~l~Al~~A~~~I~~G~~d--~~lvgG~e~~~~p~~~~~~~~~~~l~~~~~~~~~~~rpfd~~ 281 (468)
.+|++. +.+.|+.+|++++.||..|.++|++|.++ .+||+|+|.+..+. ...|+.
T Consensus 101 ~lG~~~~~~~~v~~aC~~~~~al~~A~~~i~sg~~~~~~vLvvg~e~~s~~~---------------------~~~~~~- 158 (357)
T 3s3l_A 101 EAVGRHVPAFGLAQRCNGGMGAIELAGAYLGSGIGAGHAALLTTGDRFAGPR---------------------IDRWNS- 158 (357)
T ss_dssp HHTCSSSCEEEEECGGGHHHHHHHHHHHHHHTTSSSSSEEEEEEEECCCTTT---------------------CCTTTS-
T ss_pred HhCCCCCcEEEEcCccHHHHHHHHHHHHHHHcCCCCCCEEEEEEEecccccc---------------------cccccc-
Confidence 899975 88999999999999999999999999999 99999999732111 011222
Q ss_pred CCCeeecceeEEEEecchhHHHhcCCceEEEEEEEEEcCCCCC---------CCCC--------CCCh------------
Q 012221 282 RDGFVMGEGAGVLVMESLEHAMKRGAPIIAEYLGGAVNCDAYH---------MTDP--------RADG------------ 332 (468)
Q Consensus 282 ~~G~v~gEGaaavvL~~~~~A~~~g~~i~a~i~g~~~~~d~~~---------~~~~--------~~~~------------ 332 (468)
+.++++||||+|+||++.+. + ..|.++...+++.. ...+ ..++
T Consensus 159 ~~~~lfGDGA~A~vl~~~~~----~----~~i~~~~~~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~ 230 (357)
T 3s3l_A 159 VDVTMYGDGAAALVLSTRDG----F----ARVLSTATGVDNSLEILARGDEPFAPHPVEPSPVADLGTRTVRGAELADLP 230 (357)
T ss_dssp SSSCCBCCEEEEEEEESSCC----S----EEEEEEEEEECGGGGGGGTTTCCCCSSCCSSCCCCCHHHHHHHHHHHHCCT
T ss_pred cCCcccccccEEEEEecCCC----C----CeEEEEEEEEccChhhhcccCCCCCCCccCcCCccccccchhhhhcccchh
Confidence 25789999999999987431 1 23445444444321 0000 0011
Q ss_pred -------HHHHHHHHHHHHHcCCCCCCcCEEEE-ccCCCccCCHHHHHHHHHHhcc-CCCceeeecccccCccccchhHH
Q 012221 333 -------LGVSSCIESSLEDAGVSPEEVNYINA-HATSTLAGDLAEINAIKKVFKN-TTGIKINATKSMIGHCLGAAGGL 403 (468)
Q Consensus 333 -------~~~~~~i~~al~~Agl~~~dId~v~~-h~~gt~~~D~~E~~al~~~f~~-~~~~~v~s~k~~~Gh~~~AsG~~ 403 (468)
..+.++++++|+++|++++|||++.. |..... .+.+ .+.++- .+++.. .....+||+.+|+=.+
T Consensus 231 ~~~~~~~~~~~~~i~~~L~~~gl~~~did~~v~~hq~~~~-~~~~-----~~~lgl~~ek~~~-~~~~~~GNt~aAsipl 303 (357)
T 3s3l_A 231 DLTHRYIDLLVAAKTQALEDAGTAIEDIAHAVIPVSRRGT-GHEL-----HDLLGLPDERTSW-AYGRTTGHVGAGDQYA 303 (357)
T ss_dssp THHHHHHHHHHHHHHHHHHHTTCCGGGCSEEECCSCCCCS-SCCH-----HHHHTSCGGGBTH-HHHHHHCBCTTCHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEecCcChHH-HHHH-----HHHcCCCHHHhHH-HhccccccchHhHHHH
Confidence 13555789999999999999999996 877765 4433 233332 112221 2223469988887655
Q ss_pred HHHHHHHHHhcCCcCCCCCCCCCCCCCCcccccccccccCccEEEEEcccccCeeeEEEEee
Q 012221 404 EAIATVKAITTGWLHPSINQFNPEPSVEFDTVANKKQQHEVNVAISNSFGFGGHNSVVAFSA 465 (468)
Q Consensus 404 ~l~~~~~~l~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~g~gG~n~~~vl~~ 465 (468)
.|..+ ++.+.+- +-..++..+||.|-+-.+++|+-
T Consensus 304 ~L~~~---~~~g~l~------------------------~Gd~vll~~fG~G~t~~a~ll~~ 338 (357)
T 3s3l_A 304 GLAHL---VENALVQ------------------------PGDRVLLFGGGAGYTCTAAVVEI 338 (357)
T ss_dssp HHHHH---HHTTCCC------------------------TTCEEEEECCBTTTEEEEEEEEE
T ss_pred HHHHH---HHcCCCC------------------------CCCEEEEEEEchhhhheeeeEEe
Confidence 55443 4444331 12356668999998888888875
|
| >4efi_A 3-oxoacyl-(acyl-carrier protein) synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.35A {Burkholderia xenovorans} | Back alignment and structure |
|---|
Probab=99.74 E-value=8e-17 Score=159.04 Aligned_cols=241 Identities=16% Similarity=0.161 Sum_probs=161.3
Q ss_pred HHHHHHHHHHHHHHHcCCCCccccccccccceEEEeecCCCccchHHHHHHHHHhCCCCcCCcCcchhhhhhhHHHHhhh
Q 012221 126 CLRYCIVAGKKALEDADLGADISKKIDKERAGVLVGTGMGGLTVFSDGVQALIEKGHRKITPFFIPYAITNMGSALLAID 205 (468)
Q Consensus 126 ~~~l~l~a~~~AL~dAgl~~~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~ia~~ 205 (468)
...|+.+|+++||+++|+ ++++++ .+++++..+.. .. ...+.+++..
T Consensus 66 ~~~La~~Aa~~aL~~agi---~~~~Id----~vi~~t~~~~~---------------------~~-----p~~a~~v~~~ 112 (354)
T 4efi_A 66 AGDLCRKAGEKLLAGLGW---QADSID----ALIFVSQTPNY---------------------RL-----PATAFVLQAE 112 (354)
T ss_dssp HHHHHHHHHHHHHHHHTC---CGGGCC----EEEEECSSCSC---------------------SS-----SCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCC---CHHHCC----EEEEEeCCCCC---------------------CC-----CcHHHHHHHH
Confidence 578999999999999999 666776 68888753321 11 1237788899
Q ss_pred hCCC--CcceeecccChHHHHHHHHHHHHHHhCCCCEEEEEeeccccchhhhhHhhhccccccCCCCCCCCCCCCCCCCC
Q 012221 206 LGFM--GPNYSISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWDKDRD 283 (468)
Q Consensus 206 lgl~--Gp~~~v~~acas~l~Al~~A~~~I~~G~~d~~lvgG~e~~~~p~~~~~~~~~~~l~~~~~~~~~~~rpfd~~~~ 283 (468)
+|+. .+.+.|+.+|+|++.||..|.++|++|.++.+||+|+|.+.... . ++....
T Consensus 113 lGl~~~~~~~~v~~aC~s~~~al~~A~~~i~~g~~~~vLvvg~e~~s~~~----------------------~-~~d~~~ 169 (354)
T 4efi_A 113 LDLPASCLALDINLGCSGYPQALWLGMNLIQTGAAKRVLLAVGDTISKMI----------------------D-PTDRST 169 (354)
T ss_dssp TTCCTTSEEEEECCCTTHHHHHHHHHHHHHHTTSCSEEEEEEEECGGGGC----------------------C-TTCHHH
T ss_pred cCcCCCccEEeeCcccHHHHHHHHHHHHHHHCCCCCEEEEEEechhcccC----------------------C-cccccc
Confidence 9993 58999999999999999999999999999999999999732110 0 111123
Q ss_pred CeeecceeEEEEecchhHHHhcCCceEEEEEEEEEcCCCC-----CC----CCC-----------------CCCh-----
Q 012221 284 GFVMGEGAGVLVMESLEHAMKRGAPIIAEYLGGAVNCDAY-----HM----TDP-----------------RADG----- 332 (468)
Q Consensus 284 G~v~gEGaaavvL~~~~~A~~~g~~i~a~i~g~~~~~d~~-----~~----~~~-----------------~~~~----- 332 (468)
..++||||+|+||++.+. ..++ .+...+++. .. ..| ..++
T Consensus 170 ~~lfGDGA~A~vl~~~~~-----~~~~----~~~~~s~g~~~~~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~g~~v~~ 240 (354)
T 4efi_A 170 SLLFGDAGTMTALETSNG-----DAAA----HFIIGADGKGARNLIVPSGGFKPYDAAADERMAGKSPECLFMDGGEIFN 240 (354)
T ss_dssp HTTBCCEEEEEEEEECCS-----CCEE----EEEEEECGGGGGGEECCSSSSSCCCGGGCGGGTTCCTTSCEECHHHHHH
T ss_pred ccccccceeEEEEeecCC-----CCce----EEEEEEcCCCcceEEecCCCCCCCccccccccccccccceEEccHHHHH
Confidence 568999999999987542 1122 222211211 00 001 0112
Q ss_pred ---HHHHHHHHHHHHHcCCCCCCcCEEEEccCCCccCCHHHHHHHHHHhcc-CCCceeeecccccCccccchhHHHHHHH
Q 012221 333 ---LGVSSCIESSLEDAGVSPEEVNYINAHATSTLAGDLAEINAIKKVFKN-TTGIKINATKSMIGHCLGAAGGLEAIAT 408 (468)
Q Consensus 333 ---~~~~~~i~~al~~Agl~~~dId~v~~h~~gt~~~D~~E~~al~~~f~~-~~~~~v~s~k~~~Gh~~~AsG~~~l~~~ 408 (468)
..+.++++++|+++|++++|||++..|..+... .+++.+.++- .+++. ..-..+||+.+|+=.+.|..+
T Consensus 241 ~~~~~~~~~i~~~l~~~gl~~~did~~v~Hq~~~~i-----~~~~~~~Lgl~~ek~~--~~l~~~GNt~sasi~~~L~~~ 313 (354)
T 4efi_A 241 FTLNAVPKLVSRTLDIAGRDKDSYDAFLFHQANLFM-----LKHLAKKAGLPAERVP--VNIGEYGNTSCASIPLLITTE 313 (354)
T ss_dssp HHHHHHHHHHHHHHHHHTCCGGGCSEEEECCCCHHH-----HHHHHHHTTCCGGGSC--CCHHHHCBCGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHCCEEEeCCCCHHH-----HHHHHHHhCcCHHHHH--HHHhhhCcHHHHHHHHHHHHH
Confidence 344567899999999999999999999877654 3445555543 11222 233667999988866655544
Q ss_pred HHHHhcCCcCCCCCCCCCCCCCCcccccccccccCccEEEEEcccccCeeeEEEEee
Q 012221 409 VKAITTGWLHPSINQFNPEPSVEFDTVANKKQQHEVNVAISNSFGFGGHNSVVAFSA 465 (468)
Q Consensus 409 ~~~l~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~g~gG~n~~~vl~~ 465 (468)
+. .+.+ .+-+.++..+||.|-+-.+++++-
T Consensus 314 ~~---~g~~------------------------~~Gd~vll~~fG~G~t~~~~ll~~ 343 (354)
T 4efi_A 314 LK---DRLK------------------------EETLQLGMFGFGVGYSWASAALAV 343 (354)
T ss_dssp SH---HHHH------------------------HSCEEEEEEEEETTTEEEEEEEEE
T ss_pred HH---hCCC------------------------CCCCEEEEEEEchhhhheeeEEEE
Confidence 32 2221 112346668999999988888875
|
| >3il6_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, fatty acid biosynthesis, antibiotic, acyltransferase, cytoplasm, lipid synthesis; HET: B83; 2.50A {Enterococcus faecalis} PDB: 3il5_A* 3il4_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=1.5e-15 Score=147.93 Aligned_cols=288 Identities=17% Similarity=0.211 Sum_probs=178.5
Q ss_pred CCcEEEEeeceeccCC-CCHHHHHHHHHcCCCCccccCCCCC--CCCCCccccccCCCCCCCCCCccccccCCHHHHHHH
Q 012221 55 KKRVVITGMGLVSVFG-NDVDAYYNKLLDGESGITMIDRFDA--SKFPTRFGGQIRGFSAEGYIDGKNDRRLDDCLRYCI 131 (468)
Q Consensus 55 ~~~V~ItG~g~~~p~g-~~~~~~~~~L~~G~~~i~~~~~~~~--~~~~~~~~g~v~~~d~~~~i~~~~~~~~d~~~~l~l 131 (468)
.++|.|+|+|...|.- .+.+++.+.+ +.+ +.|-. .+...+ .+..+ +....|+.
T Consensus 2 ~~~~~I~~~g~~lP~~~v~n~~~~~~~--~~~-----~~~i~~~~Gi~~R-----------~~a~~------~e~~~La~ 57 (321)
T 3il6_A 2 KNYARISCTSRYVPENCVTNHQLSEMM--DTS-----AAWIHSRTGISER-----------RIVTQ------ENTSDLCH 57 (321)
T ss_dssp CCEEEEEEEEEECCSCEEEHHHHHHHT--TSC-----HHHHHHHHSCSEE-----------ECCSS------CCHHHHHH
T ss_pred CCcEEEEEEEEECCCcEEcHHHHHHHh--CCC-----hhhhhhhcCceEE-----------EECCC------CCHHHHHH
Confidence 4579999999999997 5777776653 211 11100 011111 01111 11678999
Q ss_pred HHHHHHHHHcCCCCccccccccccceEEEeecCCCccchHHHHHHHHHhCCCCcCCcCcchhhhhhhHHHHhhhhCCC-C
Q 012221 132 VAGKKALEDADLGADISKKIDKERAGVLVGTGMGGLTVFSDGVQALIEKGHRKITPFFIPYAITNMGSALLAIDLGFM-G 210 (468)
Q Consensus 132 ~a~~~AL~dAgl~~~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~ia~~lgl~-G 210 (468)
+|+++||+++|+ ++++++ .+++++...+. ..+ ..+.+++..+|++ .
T Consensus 58 ~Aa~~aL~~ag~---~~~~Id----~li~~t~~~~~---------------------~~p-----~~a~~v~~~lGl~~~ 104 (321)
T 3il6_A 58 QVAKQLLEKSGK---QASEID----FILVATVTPDF---------------------NMP-----SVACQVQGAIGATEA 104 (321)
T ss_dssp HHHHHHHHHHTC---CGGGCC----EEEEECSSCSC---------------------SSS-----CHHHHHHHHTTCTTC
T ss_pred HHHHHHHHHcCC---CHHHCC----EEEEEeCCCCc---------------------CCC-----cHHHHHHHHcCCCCc
Confidence 999999999999 666676 68888753211 111 2477888999997 4
Q ss_pred cceeecccChHHHHHHHHHHHHHHhCCCCEEEEEeeccccchhhhhHhhhccccccCCCCCCCCCCCCCCCCCCeeecce
Q 012221 211 PNYSISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWDKDRDGFVMGEG 290 (468)
Q Consensus 211 p~~~v~~acas~l~Al~~A~~~I~~G~~d~~lvgG~e~~~~p~~~~~~~~~~~l~~~~~~~~~~~rpfd~~~~G~v~gEG 290 (468)
|.+.|+.+|+|++.||..|+++|++|.++.+||+|+|.+ +.. + . |......+++|||
T Consensus 105 ~~~~v~~aC~s~~~al~~A~~~i~~g~~~~vLvvg~e~~-s~~----------~-----------~-~~dr~~~~lfGDG 161 (321)
T 3il6_A 105 FAFDISAACSGFVYALSMAEKLVLSGRYQTGLVIGGETF-SKM----------L-----------D-WTDRSTAVLFGDG 161 (321)
T ss_dssp EEEEECCGGGHHHHHHHHHHHHHHTSSCCCEEEEEEECG-GGG----------S-----------C-TTCTTTGGGBCCE
T ss_pred eEEEeCcccHHHHHHHHHHHHHHHCCCCCEEEEEEEccc-ccc----------C-----------C-ccccccceeeccc
Confidence 899999999999999999999999999999999999973 221 0 0 1112345789999
Q ss_pred eEEEEecchhHHHhcCCceEEEEEEEEEcCCC------------CCCC-C---------CCCChHHH----HHHHHHHHH
Q 012221 291 AGVLVMESLEHAMKRGAPIIAEYLGGAVNCDA------------YHMT-D---------PRADGLGV----SSCIESSLE 344 (468)
Q Consensus 291 aaavvL~~~~~A~~~g~~i~a~i~g~~~~~d~------------~~~~-~---------~~~~~~~~----~~~i~~al~ 344 (468)
|+|+||++.+. ..++. +...+++ .... . ...++..+ .+.+.++++
T Consensus 162 A~A~vl~~~~~-----~~i~~----~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~i~ 232 (321)
T 3il6_A 162 AAGVLIEAAET-----PHFLN----EKLQADGQRWTALTSGYTINESPFYQGHKQASKTLQMEGRSIFDFAIKDVSQNIL 232 (321)
T ss_dssp EEEEEEEEESS-----CCEEE----EEEEECGGGGGGEECCCCCCCSTTCCCCCCCCCSCEECHHHHHHHHHHHHHHHHH
T ss_pred cEEEEEEEcCC-----CCEEE----EEEEEcCCCCCeEEeCCCCCCCCCCccccccccceeechHHHHHHHHHHHHHHHH
Confidence 99999987542 12332 2222211 0000 0 01122221 123334444
Q ss_pred HcCCCCCCcCEEEEccCCCccCCHHHHHHHHHHhcc-CCCceeeecccccCccccchhHHHHHHHHHHHhcCCcCCCCCC
Q 012221 345 DAGVSPEEVNYINAHATSTLAGDLAEINAIKKVFKN-TTGIKINATKSMIGHCLGAAGGLEAIATVKAITTGWLHPSINQ 423 (468)
Q Consensus 345 ~Agl~~~dId~v~~h~~gt~~~D~~E~~al~~~f~~-~~~~~v~s~k~~~Gh~~~AsG~~~l~~~~~~l~~~~~pp~~~~ 423 (468)
++ +.++|||++..|..+... .+.+.+.++- .+++. ..-..+||+.+|+=.+.|.. .++.+.+.|-
T Consensus 233 ~~-l~~~did~~v~Hq~~~~i-----~~~~~~~lgl~~ek~~--~~l~~~GNt~sasi~~~L~~---~~~~g~~~~G--- 298 (321)
T 3il6_A 233 SL-VTDETVDYLLLHQANVRI-----IDKIARKTKISREKFL--TNMDKYGNTSAASIPILLDE---AVENGTLILG--- 298 (321)
T ss_dssp TT-CCGGGCSEEEECCSCHHH-----HHHHHHHHTCCGGGBC--CCGGGTCBCGGGHHHHHHHH---HHHTTSSCTT---
T ss_pred HH-cCcccCCEEEEcCCCHHH-----HHHHHHHcCcCHHHhh--hhHhhcccHHHHHHHHHHHH---HHHhCCCCCC---
Confidence 33 338999999999776653 3445555543 12232 24567899988875555443 3455543210
Q ss_pred CCCCCCCCcccccccccccCccEEEEEcccccCeeeEEEEe
Q 012221 424 FNPEPSVEFDTVANKKQQHEVNVAISNSFGFGGHNSVVAFS 464 (468)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~l~~s~g~gG~n~~~vl~ 464 (468)
..+..+..+||.|-+-.+++++
T Consensus 299 -------------------~~d~vll~~fG~G~t~~~~~l~ 320 (321)
T 3il6_A 299 -------------------SQQRVVLTGFGGGLTWGSLLLT 320 (321)
T ss_dssp -------------------SCCEEEEEEEETTTEEEEEEEE
T ss_pred -------------------CCCEEEEEEEehhheeEEEEEE
Confidence 0135667899999998888875
|
| >2f82_A HMG-COA synthase; HMGS1, transferase; 2.10A {Brassica juncea} PDB: 2f9a_A* 2fa0_A* 2fa3_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=9.5e-16 Score=155.89 Aligned_cols=227 Identities=15% Similarity=0.102 Sum_probs=148.1
Q ss_pred cEEEEeeceeccCC-CCHHHHHHHHHcCCCCccccCCCCCCCCCCccccccCCCCCCCCCCccccccCCHHHHHHHHHHH
Q 012221 57 RVVITGMGLVSVFG-NDVDAYYNKLLDGESGITMIDRFDASKFPTRFGGQIRGFSAEGYIDGKNDRRLDDCLRYCIVAGK 135 (468)
Q Consensus 57 ~V~ItG~g~~~p~g-~~~~~~~~~L~~G~~~i~~~~~~~~~~~~~~~~g~v~~~d~~~~i~~~~~~~~d~~~~l~l~a~~ 135 (468)
.|.|.|+|...|.- .+.+++.+.+ |.+ +.|-..+...+... + ..+ -.....|++.|++
T Consensus 3 ~v~I~~ig~y~P~~~v~~~~l~~~~--g~~-----~~~~~~g~G~~~~~----~-----~~~-----~e~~~~La~~Aa~ 61 (450)
T 2f82_A 3 NVGILAMDIYFPPTCVQQEALEAHD--GAS-----KGKYTIGLGQDCLA----F-----CTE-----LEDVISMSFNAVT 61 (450)
T ss_dssp SCEEEEEEEECCSEEEEHHHHHHHT--TCC-----TTTTTTTSCCCEEE----C-----CCT-----TCCHHHHHHHHHH
T ss_pred ceEEEEEEEECCCeeccHHHHHHHh--CCC-----HHHhhhhhCceeee----e-----CCC-----CCCHHHHHHHHHH
Confidence 58999999999987 5677776542 221 11111111000000 0 001 1235789999999
Q ss_pred HHHHHcCCCCccccccccccceEEEeecCCCccchHHHHHHHHHhCCCCcCCcCcchhhhhhhHHHHhhhhCC---C-Cc
Q 012221 136 KALEDADLGADISKKIDKERAGVLVGTGMGGLTVFSDGVQALIEKGHRKITPFFIPYAITNMGSALLAIDLGF---M-GP 211 (468)
Q Consensus 136 ~AL~dAgl~~~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~ia~~lgl---~-Gp 211 (468)
+||+++|+ ++++++ .|++|+..+... ....+..++..||+ + .+
T Consensus 62 ~aL~~agi---~~~~Id----~li~~t~t~~~~--------------------------~p~~a~~v~~~lgl~g~~~~~ 108 (450)
T 2f82_A 62 SLLEKYKI---DPKQIG----RLEVGSETVIDK--------------------------SKSIKTFLMQLFEKCGNTDVE 108 (450)
T ss_dssp HHHHHTTC---CGGGEE----EEEEECCCCSCS--------------------------SSCHHHHHTHHHHTTTCCCCB
T ss_pred HHHHHcCc---CHHHCC----EEEEEecCCCCC--------------------------CCcHHHHHHHHhCCcCCCCce
Confidence 99999999 555554 466676532110 11347778888888 3 48
Q ss_pred ceeecccChHHHHHHHHHHHHHHhCCC--CEEEEEeeccccchhhhhHhhhccccccCCCCCCCCCCCCCCCCCCeeecc
Q 012221 212 NYSISTACATSNYCFYAAANHIRRGEA--DLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWDKDRDGFVMGE 289 (468)
Q Consensus 212 ~~~v~~acas~l~Al~~A~~~I~~G~~--d~~lvgG~e~~~~p~~~~~~~~~~~l~~~~~~~~~~~rpfd~~~~G~v~gE 289 (468)
.+.+..+|+|++.||..|.++|++|.+ +.+||+|+|... |+....+.++||
T Consensus 109 ~~~v~~aC~gg~~AL~~A~~~I~sg~~~~~~vLVvg~e~~~---------------------------~~~~~~~~~fGD 161 (450)
T 2f82_A 109 GVDSTNACYGGTAALLNCVNWVESNSWDGRYGLVICTDSAV---------------------------YAEGPARPTGGA 161 (450)
T ss_dssp CCEECSGGGHHHHHHHHHHHHHHSTTCCSCEEEEEEEEEEC---------------------------CSSSTTGGGCEE
T ss_pred EEEhhhhhHHHHHHHHHHHHHHHcCCCcCCeEEEEEeeecc---------------------------ccCCCCCccccc
Confidence 899999999999999999999999998 999999999631 111235678999
Q ss_pred eeEEEEecchhHHHhcCCceEEEEEEEEEcCCCCCCC-------CCCCChH--------HHHHHHHHHHH------HcCC
Q 012221 290 GAGVLVMESLEHAMKRGAPIIAEYLGGAVNCDAYHMT-------DPRADGL--------GVSSCIESSLE------DAGV 348 (468)
Q Consensus 290 GaaavvL~~~~~A~~~g~~i~a~i~g~~~~~d~~~~~-------~~~~~~~--------~~~~~i~~al~------~Agl 348 (468)
||+|+||++.+. . .+.....|..... .++.. .|..++. .+..+++++|+ ++|+
T Consensus 162 GA~A~ll~~~~~----~-~~~~~~~g~~~~~-~~d~~~p~~~~~~~~~~G~~~~~~~~~~l~~~~~~~l~~~~~~~~agl 235 (450)
T 2f82_A 162 AAIAMLIGPDAP----I-VFESKLRGSHMAH-VYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKHLCNKFEKLEGKEF 235 (450)
T ss_dssp EEEEEEEESSCS----E-EEEEEEEEEEECC-CCSEECCCTTCSCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCC
T ss_pred ceEEEEeccCCc----e-EEEeccceeehhh-ccceeeeCCCCCceeecCccHHHHHHHHHHHHHHHHHHHhhhccccCC
Confidence 999999986532 1 1222223433322 11111 1223443 34567888886 8999
Q ss_pred CCCCcCEEEEccCCCccCCHHH
Q 012221 349 SPEEVNYINAHATSTLAGDLAE 370 (468)
Q Consensus 349 ~~~dId~v~~h~~gt~~~D~~E 370 (468)
+++||||+..|..+++..+.+.
T Consensus 236 ~~~did~~v~Hq~~~~i~~~~~ 257 (450)
T 2f82_A 236 SINDADYFVFHSPYNKLVQKSF 257 (450)
T ss_dssp CGGGCSEEEECCSSHHHHHHHH
T ss_pred ChhhcCEEEecCChHHHHHHHH
Confidence 9999999999999998776654
|
| >3ov2_A Curcumin synthase; type III polyketide synthase, transferase; 2.32A {Curcuma longa} PDB: 3ov3_A | Back alignment and structure |
|---|
Probab=99.71 E-value=2.2e-16 Score=157.84 Aligned_cols=331 Identities=15% Similarity=0.139 Sum_probs=195.2
Q ss_pred CCcEEEEeeceeccCC-CCHHHHHHHHH--cCCCCccc----cCC-CCCCCCCCcccccc-------CCCC-CC-CCCCc
Q 012221 55 KKRVVITGMGLVSVFG-NDVDAYYNKLL--DGESGITM----IDR-FDASKFPTRFGGQI-------RGFS-AE-GYIDG 117 (468)
Q Consensus 55 ~~~V~ItG~g~~~p~g-~~~~~~~~~L~--~G~~~i~~----~~~-~~~~~~~~~~~g~v-------~~~d-~~-~~i~~ 117 (468)
+.++.|+|+|...|.- .+.+++++.+. ...+.... +.+ +...+...|+...- ++|. .. ..+..
T Consensus 14 ~~~~~I~~ig~~~P~~~v~n~e~~~~~~~~~~~~~~~~~~~~~~~i~~~tGI~~R~~~~~~e~~~~~~~~~~~~~p~~~~ 93 (393)
T 3ov2_A 14 QGPATIMAIGTATPPNLYEQSTFPDFYFRVTNSDDKQELKKKFRRMCEKTMVKKRYLHLTEEILKERPKLCSYKEASFDD 93 (393)
T ss_dssp SSCCEEEEEEEECCSCEEEGGGHHHHHHHHTTCTTCHHHHHHHHHHHHHTCCCEEECSCCHHHHHHSGGGGSSSSCCHHH
T ss_pred CCCeEEEEEEeeCCCcccCHHHHHHHHHHhhcccchHHHHHHHHHHHHhcCCceEEeecChhhhccCcccccCCCCCHHH
Confidence 4569999999999998 57777877652 11111100 000 01112222211100 0000 00 00122
Q ss_pred cccccCCHHHHHHHHHHHHHHHHcCCCCccccccccccceEEEeecCCCccchHHHHHHHHHhCCCCcCCcCcchhhhhh
Q 012221 118 KNDRRLDDCLRYCIVAGKKALEDADLGADISKKIDKERAGVLVGTGMGGLTVFSDGVQALIEKGHRKITPFFIPYAITNM 197 (468)
Q Consensus 118 ~~~~~~d~~~~l~l~a~~~AL~dAgl~~~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ 197 (468)
+....++....|+.+|+++||+++|+ +++++| .|++++..+ +.. ..
T Consensus 94 r~~~~~~~~~~La~~Aa~~aL~~ag~---~~~dId----~vi~~t~t~----------------------~~~-----p~ 139 (393)
T 3ov2_A 94 RQDIVVEEIPRLAKEAAEKAIKEWGR---PKSEIT----HLVFCSISG----------------------IDM-----PG 139 (393)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTS---CGGGCC----EEEEEESSC----------------------CCB-----SC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCC---CHHHCC----EEEEEEeCC----------------------CCC-----CC
Confidence 22233445788999999999999999 666776 578887532 111 12
Q ss_pred hHHHHhhhhCCCCc---ceeecccChHHHHHHHHHHHHHHhCCCCEEEEEeeccccchhhhhHhhhccccccCCCCCCCC
Q 012221 198 GSALLAIDLGFMGP---NYSISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTA 274 (468)
Q Consensus 198 ~a~~ia~~lgl~Gp---~~~v~~acas~l~Al~~A~~~I~~G~~d~~lvgG~e~~~~p~~~~~~~~~~~l~~~~~~~~~~ 274 (468)
.+.+++..||+++. .+.+..+|++++.||..|.++|++|.++.+||+|+|.+...+ .. |.+
T Consensus 140 ~a~~v~~~LGl~~~~~~~~~v~~~C~g~~~al~~A~~~i~sg~~~~vLvvg~E~~s~~~----------~~-----~~d- 203 (393)
T 3ov2_A 140 ADYRLATLLGLPLTVNRLMIYSQACHMGAAMLRIAKDLAENNRGARVLVVACEITVLSF----------RG-----PNE- 203 (393)
T ss_dssp HHHHHHHHHTCCTTSEEEEEESCCTTHHHHHHHHHHHHHHHSTTCEEEEEEEECGGGTC----------CC-----CCT-
T ss_pred HHHHHHHHcCCCCCcceeeEEcCccHHHHHHHHHHHHHHHcCCCCEEEEEEEeccchhc----------cC-----Ccc-
Confidence 47788999999874 689999999999999999999999999999999999731110 00 000
Q ss_pred CCCCCCCCCCeeecceeEEEEecchhHHHhcCCceEEEEEEEEE-cC-CCC------------CCCCCCCCh-----HHH
Q 012221 275 SRPWDKDRDGFVMGEGAGVLVMESLEHAMKRGAPIIAEYLGGAV-NC-DAY------------HMTDPRADG-----LGV 335 (468)
Q Consensus 275 ~rpfd~~~~G~v~gEGaaavvL~~~~~A~~~g~~i~a~i~g~~~-~~-d~~------------~~~~~~~~~-----~~~ 335 (468)
+.++.....+++||||+|+||++.+... .....+ ++...+. .. +.. .+.. ...- ..+
T Consensus 204 -~~~~~~~~~~lFGDGAaA~vl~~~~~~~-~~~~~~-~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~-~~~v~~~~~~~~ 279 (393)
T 3ov2_A 204 -GDFEALAGQAGFGDGAGAVVVGADPLEG-IEKPIY-EIAAAMQETVAESQGAVGGHLRAFGWTFYF-LNQLPAIIADNL 279 (393)
T ss_dssp -TCHHHHHHHHHBCCEEEEEEEESSCCTT-TCCCSE-EEEEEEEEECTTCTTSEEEEEETTEEEEEE-CTTHHHHHHTTS
T ss_pred -cchhhhcccccccCccEEEEEEecCCCc-ccCcee-EEEecCcEEecCCcccCceeeeCCceEEEE-CcHHHHHHHHHH
Confidence 0011012467899999999998754311 011222 2322221 11 100 0000 1111 123
Q ss_pred HHHHHHHHHHcCCCC-CCcCEEEEccCCCccCCHHHHHHHHHHhcc-CCCceee-ecccccCccccchhHHHHHHHHHH-
Q 012221 336 SSCIESSLEDAGVSP-EEVNYINAHATSTLAGDLAEINAIKKVFKN-TTGIKIN-ATKSMIGHCLGAAGGLEAIATVKA- 411 (468)
Q Consensus 336 ~~~i~~al~~Agl~~-~dId~v~~h~~gt~~~D~~E~~al~~~f~~-~~~~~v~-s~k~~~Gh~~~AsG~~~l~~~~~~- 411 (468)
..+++++|+++|+++ +|| ++..|..+... ++++.+.++- .+++..+ ..-..+||+.+|+=.+.|-.++..
T Consensus 280 ~~~i~~~L~~~gl~~~~di-~~v~Hq~n~~i-----~~~v~~~Lgl~~ek~~~s~~~l~~~GNtssAsip~~L~~~~~~~ 353 (393)
T 3ov2_A 280 GRSLERALAPLGVREWNDV-FWVAHPGNWAI-----IDAIEAKLQLSPDKLSTARHVFTEYGNMQSATVYFVMDELRKRS 353 (393)
T ss_dssp HHHHHHHHGGGTCCSGGGS-EEEECCCCHHH-----HHHHHHHHTCCTTTTHHHHHHHHHHCBCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCcccCc-EEEECCCChHH-----HHHHHHHcCCCHHHHHHHHHHHHHhCChHHhHHHHHHHHHHHhh
Confidence 467999999999997 888 89999776554 3444555543 2223221 234567999998877766665543
Q ss_pred HhcCCcCCCCCCCCCCCCCCcccccccccccCccEEEEEcccccCeeeEEEEeec
Q 012221 412 ITTGWLHPSINQFNPEPSVEFDTVANKKQQHEVNVAISNSFGFGGHNSVVAFSAF 466 (468)
Q Consensus 412 l~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~g~gG~n~~~vl~~~ 466 (468)
++.|.+. + ......++..+||-|-+-.+++|+..
T Consensus 354 ~~~g~~~-----------------~----G~~~d~vll~~fG~G~t~~~~ll~~~ 387 (393)
T 3ov2_A 354 AVEGRST-----------------T----GDGLQWGVLLGFGPGLSIETVVLRSM 387 (393)
T ss_dssp HHTTCSB-----------------T----TTTCSEEEEEEEETTTEEEEEEEEEC
T ss_pred hhcCCcC-----------------C----CCCCCeEEEEEECccceeeeeeeEEc
Confidence 2334331 0 00124567789999999999999875
|
| >4ewp_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; transferase; 2.20A {Micrococcus luteus nctc 2665} | Back alignment and structure |
|---|
Probab=99.68 E-value=2.5e-15 Score=148.39 Aligned_cols=246 Identities=24% Similarity=0.311 Sum_probs=157.0
Q ss_pred HHHHHHHHHHHHHHHcCCCCccccccccccceEEEeecCCCccchHHHHHHHHHhCCCCcCCcCcchhhhhhhHHHHhhh
Q 012221 126 CLRYCIVAGKKALEDADLGADISKKIDKERAGVLVGTGMGGLTVFSDGVQALIEKGHRKITPFFIPYAITNMGSALLAID 205 (468)
Q Consensus 126 ~~~l~l~a~~~AL~dAgl~~~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~ia~~ 205 (468)
...|+.+|+++||+++|+ +++++| .+++++..+.. .. ...+.+|...
T Consensus 62 ~~~la~~Aa~~aL~~ag~---~~~dId----~li~~t~t~~~---------------------~~-----P~~a~~v~~~ 108 (350)
T 4ewp_A 62 VPVMAVGAAREALERAGL---QGSDLD----AVIVSTVTFPH---------------------AT-----PSAAALVAHE 108 (350)
T ss_dssp HHHHHHHHHHHHHHHTTC---CGGGCS----EEEEECSCCSC---------------------SS-----SCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCC---CHHHCC----EEEEEeccCCC---------------------CC-----CchHHHHHHH
Confidence 567999999999999999 666666 56777653211 11 1237788889
Q ss_pred hCCCC-cceeecccChHHHHHHHHHHHHHHhCCCCEEEEEeeccccchhhhhHhhhccccccCCCCCCCCCCCCCCCCCC
Q 012221 206 LGFMG-PNYSISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWDKDRDG 284 (468)
Q Consensus 206 lgl~G-p~~~v~~acas~l~Al~~A~~~I~~G~~d~~lvgG~e~~~~p~~~~~~~~~~~l~~~~~~~~~~~rpfd~~~~G 284 (468)
||++. +++.|..+|++++.||..|..+|++|..+.+||+++|.+ +.. + .+ ......
T Consensus 109 LGl~~~~a~di~~~C~g~~~aL~~A~~~i~~g~~~~~Lvv~~E~~-s~~----------~-----------d~-~~~~~~ 165 (350)
T 4ewp_A 109 IGATPAPAYDVSAACAGYCYGVAQADALVRSGTARHVLVVGVERL-SDV----------V-----------DP-TDRSIS 165 (350)
T ss_dssp TTCTTSCEEEEECGGGHHHHHHHHHHHHHHTTSCSEEEEEEEEEG-GGG----------C-----------CT-TCTTTG
T ss_pred hCCCCceEEEeecchhhHHHHHHHhhhhhhCCCccceeEeeeeec-eec----------c-----------cc-cccccc
Confidence 99976 788899999999999999999999999999999999972 211 1 11 122346
Q ss_pred eeecceeEEEEecchhHHHhcCCceEEEEEEEE--------Ec----------------CCCCCCC------C--CCCCh
Q 012221 285 FVMGEGAGVLVMESLEHAMKRGAPIIAEYLGGA--------VN----------------CDAYHMT------D--PRADG 332 (468)
Q Consensus 285 ~v~gEGaaavvL~~~~~A~~~g~~i~a~i~g~~--------~~----------------~d~~~~~------~--~~~~~ 332 (468)
+++||||+|+||+..+.. .+.....+.. .. .+..... . ...++
T Consensus 166 ~lfgDGA~A~vl~~~~~~-----~~~~~~~~sdg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 240 (350)
T 4ewp_A 166 FLLGDGAGAVIVAASDEP-----GISPSVWGSDGERWSTISMTHSQLELRDAVEHARTTGDASAITGAEGMLWPTLRQDG 240 (350)
T ss_dssp GGBCEEEEEEEEEEESSC-----CBCCCEEEECGGGTTSEEESSCHHHHHHHHHHHHHHSCCTTTTTCSSCSSCCEEECH
T ss_pred cccccchheeeeecccCC-----CccceeeeecccccceeeecCCccccCcccccccccCCccccccccccccceeEehh
Confidence 789999999999865421 1111111110 00 0000000 0 01122
Q ss_pred H--------HHHHHHHHHHHHcCCCCCCcCEEEEccCCCccCCHHHHHHHHHHhccCCCceeeecccccCccccchhHHH
Q 012221 333 L--------GVSSCIESSLEDAGVSPEEVNYINAHATSTLAGDLAEINAIKKVFKNTTGIKINATKSMIGHCLGAAGGLE 404 (468)
Q Consensus 333 ~--------~~~~~i~~al~~Agl~~~dId~v~~h~~gt~~~D~~E~~al~~~f~~~~~~~v~s~k~~~Gh~~~AsG~~~ 404 (468)
. .+.++++++|+++|++++|||++..|..+... .+++.+.++-...-.+...-..+||+.+||=.+.
T Consensus 241 ~~v~~~a~~~~~~~i~~~L~~~gl~~~did~~v~Hq~~~~i-----~~~~~~~Lgl~~~~~~~~~l~~~GNtssasi~~~ 315 (350)
T 4ewp_A 241 PSVFRWAVWSMAKVAREALDAAGVEPEDLAAFIPHQANMRI-----IDEFAKQLKLPESVVVARDIADAGNTSAASIPLA 315 (350)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHTCCGGGEEEEEECCSCHHH-----HHHHHHHTTCCTTSEECCTHHHHCBCGGGHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHhhcCChhHhceEEecCCCHHH-----HHHHHHHcCcChHhEEecccccccchHHHHHHHH
Confidence 2 24567999999999999999999999776654 3345555543211122223345799888775544
Q ss_pred HHHHHHHHhcCCcCCCCCCCCCCCCCCcccccccccccCccEEEEEcccccCeeeEEEEe
Q 012221 405 AIATVKAITTGWLHPSINQFNPEPSVEFDTVANKKQQHEVNVAISNSFGFGGHNSVVAFS 464 (468)
Q Consensus 405 l~~~~~~l~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~g~gG~n~~~vl~ 464 (468)
|.. .++++.+. +-..++..+||-|=+-.++|++
T Consensus 316 L~~---~~~~g~~~------------------------~Gd~vll~~fG~G~t~~~~vlr 348 (350)
T 4ewp_A 316 MHR---LLEENPEL------------------------SGGLALQIGFGAGLVYGAQVVR 348 (350)
T ss_dssp HHH---HHHHCGGG------------------------TTSEEEEEEEETTTEEEEEEEE
T ss_pred HHH---HHHhCCCC------------------------CcCEEEEEEEchhhEeEEEEEE
Confidence 433 34444331 1234556789977666777775
|
| >3oit_A OS07G0271500 protein; type III polyketide synthases, transferase; 2.00A {Oryza sativa} PDB: 3ale_A | Back alignment and structure |
|---|
Probab=99.68 E-value=8.1e-16 Score=153.37 Aligned_cols=330 Identities=14% Similarity=0.117 Sum_probs=187.0
Q ss_pred CCcEEEEeeceeccCC-CCHHHHHHHHHc--CCCCcccc----CC-CCCCCCCCcccccc-------CCCC-CC-CCCCc
Q 012221 55 KKRVVITGMGLVSVFG-NDVDAYYNKLLD--GESGITMI----DR-FDASKFPTRFGGQI-------RGFS-AE-GYIDG 117 (468)
Q Consensus 55 ~~~V~ItG~g~~~p~g-~~~~~~~~~L~~--G~~~i~~~----~~-~~~~~~~~~~~g~v-------~~~d-~~-~~i~~ 117 (468)
+.++.|+|+|...|.- .+.+++++.+.. ..+....+ .+ +...+...|+...- ++|. .. ..+..
T Consensus 8 ~~~~~I~~ig~~~P~~~v~n~e~~~~~~~~~~~~~~~~~~~~~~~i~~~tGI~~R~~~~~~e~~~~~~~~~~~~~p~~~~ 87 (387)
T 3oit_A 8 DGLAAVLAIGTANPPNCVTQEEIPDFYFRVTNSDHLTALKDKFKRICQEMGVQRRYLHHTEEMLSAHPEFVDRDAPSLDA 87 (387)
T ss_dssp SSCCEEEEEEEECCSEEEETTTHHHHHHHHTTCTTCHHHHHHHHHHHHTSSCCEEEESCCHHHHHHCGGGTCTTSCCHHH
T ss_pred CCCeEEEEEEeeCCCceecHHHHHHHHHHHhCccchHHHHHHHHHHHHhcCcceeeeecCHHHhccCccccccCCCCHHH
Confidence 4579999999999997 455666665521 11110000 00 01122222221100 0000 00 00122
Q ss_pred cccccCCHHHHHHHHHHHHHHHHcCCCCccccccccccceEEEeecCCCccchHHHHHHHHHhCCCCcCCcCcchhhhhh
Q 012221 118 KNDRRLDDCLRYCIVAGKKALEDADLGADISKKIDKERAGVLVGTGMGGLTVFSDGVQALIEKGHRKITPFFIPYAITNM 197 (468)
Q Consensus 118 ~~~~~~d~~~~l~l~a~~~AL~dAgl~~~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ 197 (468)
+....++....|+.+|+++||+++|+ ++++++ .|++++..+ +.. ..
T Consensus 88 r~~~~~~~~~~La~~Aa~~AL~~ag~---~~~dId----~li~~t~t~----------------------~~~-----p~ 133 (387)
T 3oit_A 88 RLDIAADAVPELAAEAAKKAIAEWGR---PAADIT----HLVVTTNSG----------------------AHV-----PG 133 (387)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTS---CGGGCC----EEEEEESSC----------------------CEE-----SC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCC---CHHHCC----EEEEEeeCC----------------------CCc-----cc
Confidence 23333446789999999999999999 666776 678887532 111 12
Q ss_pred hHHHHhhhhCCCCc---ceeecccChHHHHHHHHHHHHHHhCCCCEEEEEeeccccchhhhhHhhhccccccCCCCCCCC
Q 012221 198 GSALLAIDLGFMGP---NYSISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTA 274 (468)
Q Consensus 198 ~a~~ia~~lgl~Gp---~~~v~~acas~l~Al~~A~~~I~~G~~d~~lvgG~e~~~~p~~~~~~~~~~~l~~~~~~~~~~ 274 (468)
.+.+++..||+++. .+.+..+|++++.||..|.++|++|.++.+||+|+|.+...+ . +|.+
T Consensus 134 ~a~~v~~~LGl~~~~~~~~~~~~~C~~~~~al~~A~~~i~sg~~~~vLvvg~E~~s~~~-----------~----~~~d- 197 (387)
T 3oit_A 134 VDFRLVPLLGLRPSVRRTMLHLNGCFAGCAALRLAKDLAENSRGARVLVVAAELTLMYF-----------T----GPDE- 197 (387)
T ss_dssp HHHHHHHHHTCCTTCEEEEEECCGGGHHHHHHHHHHHHHHSSTTCEEEEEEEECGGGTC-----------C----CCCS-
T ss_pred HHHHHHHHhCCCCCcceeeEECchhHHHHHHHHHHHHHHhcCCCCEEEEEEEeccchhc-----------c----Cccc-
Confidence 47788999999873 689999999999999999999999999999999999732110 0 0000
Q ss_pred CCCCCCCCCCeeecceeEEEEecchhHHHhcCCceEEEEEEEEEcCC--CCC-----CCC------CCCC-----hHHHH
Q 012221 275 SRPWDKDRDGFVMGEGAGVLVMESLEHAMKRGAPIIAEYLGGAVNCD--AYH-----MTD------PRAD-----GLGVS 336 (468)
Q Consensus 275 ~rpfd~~~~G~v~gEGaaavvL~~~~~A~~~g~~i~a~i~g~~~~~d--~~~-----~~~------~~~~-----~~~~~ 336 (468)
+.++.....+++||||+|+||++.+. .......++.+.+.... ... +.. .... ...+.
T Consensus 198 -~~~~~~~~~~lFGDGAaA~vl~~~~~---~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~~v~~~~~~~~~ 273 (387)
T 3oit_A 198 -GCFRTLLVQGLFGDGAAAVIVGADAD---DVERPLFEIVSAAQTIIPESDHALNMRFTERRLDGVLGRQVPGLIGDNVE 273 (387)
T ss_dssp -SSCHHHHHHHHBCCEEEEEEEESSCC---SSCCCCEEEEEEEEEECTTCTTSEEEEECSSSEEEEECTTHHHHHHHHHH
T ss_pred -cchHhhhcccccccceEEEEEecCCC---cccCCceEEEecccEEeCCChhhccceeecCCeEEEECcHHHHHHHHHHH
Confidence 00111123678999999999987541 11112234444332211 100 000 0011 23456
Q ss_pred HHHHHHHHHc----CCCCCCcC--EEEEccCCCccCCHHHHHHHHHHhcc-CCCceee-ecccccCccccchhHHHHHHH
Q 012221 337 SCIESSLEDA----GVSPEEVN--YINAHATSTLAGDLAEINAIKKVFKN-TTGIKIN-ATKSMIGHCLGAAGGLEAIAT 408 (468)
Q Consensus 337 ~~i~~al~~A----gl~~~dId--~v~~h~~gt~~~D~~E~~al~~~f~~-~~~~~v~-s~k~~~Gh~~~AsG~~~l~~~ 408 (468)
.+++++|+++ |++ |+| ++..|..+.... +++.+.++- .+++..+ ..-..+||+.+|+=.+.|-.+
T Consensus 274 ~~~~~~L~~~~~~~gl~--d~d~~~~v~Hq~n~~il-----~~v~~~Lgl~~ek~~~s~~~l~~~GNtssAsip~~L~~~ 346 (387)
T 3oit_A 274 RCLLDMFGPLLGGDGGG--GWNDLFWAVHPGSSTIM-----DQVDAALGLEPGKLAASRRVLSDYGNMSGATVIFALDEL 346 (387)
T ss_dssp HHHHHHTGGGCC--------GGGSEEEECCCCHHHH-----HHHHHHHTCCTTTTHHHHHHHHHHCBCGGGHHHHHHHHH
T ss_pred HHHHHHHHhhcccCCCC--cccccEEEECCCCHHHH-----HHHHHHcCCCHHHHHHHHHHHHHhCchHHhHHHHHHHHH
Confidence 6788889999 887 666 999997776553 344444443 2223221 234567998888766555443
Q ss_pred HHHHhcCCcCCCCCCCCCCCCCCcccccccccccCccEEEEEcccccCeeeEEEEeecC
Q 012221 409 VKAITTGWLHPSINQFNPEPSVEFDTVANKKQQHEVNVAISNSFGFGGHNSVVAFSAFK 467 (468)
Q Consensus 409 ~~~l~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~g~gG~n~~~vl~~~~ 467 (468)
. + +.+.+ .. .......++..+||-|-+-.+++|+..+
T Consensus 347 ~---~-~~~~~-----------------G~-~g~~~d~vll~~fG~G~t~~~~ll~~~~ 383 (387)
T 3oit_A 347 R---R-QRKEA-----------------AA-AGEWPELGVMMAFGPGMTVDAMLLHATS 383 (387)
T ss_dssp H---H-C----------------------------CCEEEEEEEETTTEEEEEEEEECC
T ss_pred H---H-hhhcc-----------------CC-CCCCCCEEEEEEecccceeeeeeeEecc
Confidence 2 2 22210 00 0001245677899999999999998753
|
| >3e1h_A PKSIIINC, putative uncharacterized protein; resorcinolic lipid synthase, type III PKS, acyltransferase, transferase; 2.58A {Neurospora crassa} | Back alignment and structure |
|---|
Probab=99.62 E-value=2.5e-14 Score=144.94 Aligned_cols=262 Identities=15% Similarity=0.129 Sum_probs=158.7
Q ss_pred HHHHHHHHHHHHHHHcCCCCccccccccccceEEEeecCCCccchHHHHHHHHHhCCCCcCCcCcchhhhhhhHHHHhhh
Q 012221 126 CLRYCIVAGKKALEDADLGADISKKIDKERAGVLVGTGMGGLTVFSDGVQALIEKGHRKITPFFIPYAITNMGSALLAID 205 (468)
Q Consensus 126 ~~~l~l~a~~~AL~dAgl~~~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~ia~~ 205 (468)
...|+.+|+++||+++|+ ++++++ .|++++.. +. .. ...+.++...
T Consensus 110 a~~La~~Aa~~AL~~agi---~~~dId----~li~~t~t-~~---------------------~~-----P~~a~~v~~~ 155 (465)
T 3e1h_A 110 GVPLAVEASRKAMAEARL---VPAQIT----HMVSTTCT-DS---------------------AN-----PGYDHYVAKE 155 (465)
T ss_dssp THHHHHHHHHHHHHHHTC---CGGGCC----EEEEECSS-CC---------------------CS-----SCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCC---CHHHCC----EEEEEeeC-CC---------------------CC-----CcHHHHHHHH
Confidence 358999999999999999 666776 57777653 11 11 1237788899
Q ss_pred hCCCC-c-ceee-cccChHHHHHHHHHHHHHHh----CCCCEEEEEeeccccchhhhhHhhhccccccCCCCCCCCCCCC
Q 012221 206 LGFMG-P-NYSI-STACATSNYCFYAAANHIRR----GEADLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPW 278 (468)
Q Consensus 206 lgl~G-p-~~~v-~~acas~l~Al~~A~~~I~~----G~~d~~lvgG~e~~~~p~~~~~~~~~~~l~~~~~~~~~~~rpf 278 (468)
||++. + .+.| ..+|++++.||..|.++|++ |.++.|||+|+|.+ +...-........ ..
T Consensus 156 LGl~~~~~~~dv~~~~Csgg~~AL~~A~~~i~a~~~~G~~~~vLVvg~E~~-S~~~~~~~~~~~~-------------~~ 221 (465)
T 3e1h_A 156 LGLSDRLEKVLLHGIGCSGGLAALRTAANLCLGHTARGKPARILVLALEVS-TTMVRSELESIDA-------------LQ 221 (465)
T ss_dssp HTCCTTCEEEEECSCGGGHHHHHHHHHHHHHHHHHHTTCCCEEEEEEEECC-GGGHHHHHHHHHH-------------HT
T ss_pred hCCCCCeeEEEecCCcchHHHHHHHHHHHHHhcccccCCCCEEEEEEEeec-chhcCcccccccc-------------cc
Confidence 99987 4 5788 79999999999999999997 99999999999983 3322111100000 01
Q ss_pred CCCCCCeeecceeEEEEecchhHHHhcCCceEEEEEEEEEcCCCC--CC-------------CCCC---CChHHHHHHHH
Q 012221 279 DKDRDGFVMGEGAGVLVMESLEHAMKRGAPIIAEYLGGAVNCDAY--HM-------------TDPR---ADGLGVSSCIE 340 (468)
Q Consensus 279 d~~~~G~v~gEGaaavvL~~~~~A~~~g~~i~a~i~g~~~~~d~~--~~-------------~~~~---~~~~~~~~~i~ 340 (468)
+.....+++||||+|+||++.+... .....+..+.++....... .. ..+. .-...+..+++
T Consensus 222 ~d~~t~~LFGDGAaAvVl~~~~~~~-~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~g~~~~~g~~V~~~a~~~v~~~i~ 300 (465)
T 3e1h_A 222 ETRIGIALFSDCASAVILSNGIGEA-PGKPAIYDLLGWENRVIPDSEHDLGFDVDPMGWKVVLSPRVPVLAKASLQPTYA 300 (465)
T ss_dssp CCCCHHHHBCCEEEEEEEECCTTCC-TTCCCSEEEEEEEEEECTTCTTTEEEEEETTEEEEEECTTHHHHHHHHHHHHHH
T ss_pred cccccccccccceeEEEEEccCCCc-cccccceeeccceEEEecCCccccCccccCCCceEecChHHHHHHHHHHHHHHH
Confidence 1123457899999999998753211 0012223455543322111 00 0000 01235566788
Q ss_pred HHHHH-------cCCCCCCcCEEEEccCCCccCCHHHHHHHHHHhccC-CCceee-ecccccCccccchhHHHHHHHHHH
Q 012221 341 SSLED-------AGVSPEEVNYINAHATSTLAGDLAEINAIKKVFKNT-TGIKIN-ATKSMIGHCLGAAGGLEAIATVKA 411 (468)
Q Consensus 341 ~al~~-------Agl~~~dId~v~~h~~gt~~~D~~E~~al~~~f~~~-~~~~v~-s~k~~~Gh~~~AsG~~~l~~~~~~ 411 (468)
++|++ +|++++||||+ .|.-+... ++++.+.++-. .++..+ ..-..+||+.+|+=.+.|-. .
T Consensus 301 ~~L~~~g~~L~~agl~~~DId~~-~Hqan~rI-----l~~v~~~Lgl~~ek~~~s~~~l~~yGNtsSASip~aL~~---~ 371 (465)
T 3e1h_A 301 DLLSSLQDQLPSSYQKPADFDWA-MHPGGATI-----LSGAESAMGLTPEHMRASYDRYINHGNSSSATIFSVLNR---L 371 (465)
T ss_dssp HHHHHHGGGSCTTSCSGGGSEEE-ECCSSHHH-----HHHHHHHHTCCGGGGHHHHHHHHHHCBCGGGHHHHHHHH---H
T ss_pred HHHHhccccccccCCCHHHceEE-ecCCChHH-----HHHHHHHhCcCHHHhHHHHHHHhcceechHhHHHHHHHH---H
Confidence 88887 67999999998 99766554 34444444431 112111 11234599887764444333 2
Q ss_pred Hhc--CCcCCCCCCCCCCCCCCcccccccccccCccEEEEEcccccCeeeEEEEee
Q 012221 412 ITT--GWLHPSINQFNPEPSVEFDTVANKKQQHEVNVAISNSFGFGGHNSVVAFSA 465 (468)
Q Consensus 412 l~~--~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~g~gG~n~~~vl~~ 465 (468)
++. +.+.| .. + ....++..+||-|=+-.+++|+.
T Consensus 372 ~~~~~g~l~~-----------------Gg-~--~~d~vll~gfG~Glt~~~~llr~ 407 (465)
T 3e1h_A 372 REKDMDALAP-----------------GG-K--VKEYVVGCAFGPGINVEMCMLKR 407 (465)
T ss_dssp TSTTTTSCSS-----------------SS-C--CCSEEEEEEEETTTEEEEEEEEE
T ss_pred HHhcccccCC-----------------CC-C--CCCEEEEEEEhHHHhhhheeeEE
Confidence 333 22210 00 0 11456667999887878888875
|
| >3v4n_A HMG-COA synthase; hydroxymethylglutaryl-COA synthase, nitrosylation, transfera inhibitor complex; HET: BTB; 1.60A {Enterococcus faecalis} PDB: 3v4x_A* 1x9e_A 1ysl_B* 1ysl_A* 2hdb_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=3.8e-14 Score=141.08 Aligned_cols=262 Identities=16% Similarity=0.111 Sum_probs=158.3
Q ss_pred cEEEEeeceeccCC-CCHHHHHHHHHcCCCCccccCCCCCCCCCCccccccCCCCCCCCCCccccccCCHHHHHHHHHHH
Q 012221 57 RVVITGMGLVSVFG-NDVDAYYNKLLDGESGITMIDRFDASKFPTRFGGQIRGFSAEGYIDGKNDRRLDDCLRYCIVAGK 135 (468)
Q Consensus 57 ~V~ItG~g~~~p~g-~~~~~~~~~L~~G~~~i~~~~~~~~~~~~~~~~g~v~~~d~~~~i~~~~~~~~d~~~~l~l~a~~ 135 (468)
.|.|.|+|...|.- .+.+++.+.+ |.+. ..+. ...+...+. +..+. .....|+.+|++
T Consensus 7 ~v~I~~~g~y~P~~~v~~~~l~~~~--g~~~-~~~~--~~~Gi~~r~-----------~~~~~-----e~~~~La~~Aa~ 65 (388)
T 3v4n_A 7 TIGIDKISFFVPPYYIDMTALAEAR--NVDP-GKFH--IGIGQDQMA-----------VNPIS-----QDIVTFAANAAE 65 (388)
T ss_dssp CEEEEEEEEECCSEEEEHHHHHHHT--TSCT-HHHH--TTTCCCEEE-----------CCCTT-----CCHHHHHHHHHH
T ss_pred eEEEEEEEEECCCeEEcHHHHHHHh--CCCH-HHHH--HHhCceEEE-----------ECCCC-----CCHHHHHHHHHH
Confidence 69999999999996 6777776553 2210 0000 000110000 00111 135789999999
Q ss_pred HHHHHcCCCCccccccccccceEEEeecCCCccchHHHHHHHHHhCCCCcCCcCcchhhhhhhHHHHhhhhCCCC--cce
Q 012221 136 KALEDADLGADISKKIDKERAGVLVGTGMGGLTVFSDGVQALIEKGHRKITPFFIPYAITNMGSALLAIDLGFMG--PNY 213 (468)
Q Consensus 136 ~AL~dAgl~~~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~ia~~lgl~G--p~~ 213 (468)
+||+++| +++++ .|++++..+... . ...+..++..||+++ +.+
T Consensus 66 ~aL~~a~-----~~~Id----~li~~t~t~~~~---------------------~-----ps~a~~v~~~LGl~~~~~~~ 110 (388)
T 3v4n_A 66 AILTKED-----KEAID----MVIVGTESSIDE---------------------S-----KAAAVVLHRLMGIQPFARSF 110 (388)
T ss_dssp TTCCHHH-----HHHEE----EEEEECSSCSBS---------------------S-----SCHHHHHHHHTTCCSSCEEE
T ss_pred HHHHhCC-----cccCC----EEEEEeccCCCc---------------------C-----ccHHHHHHHHcCCCCCceEe
Confidence 9999985 24555 577776532211 1 123778888999975 788
Q ss_pred eecccChHHHHHHHHHHHHHHhCCCCEEEEEeeccccchhhhhHhhhccccccCCCCCCCCCCCCCCCCCCeeecceeEE
Q 012221 214 SISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWDKDRDGFVMGEGAGV 293 (468)
Q Consensus 214 ~v~~acas~l~Al~~A~~~I~~G~~d~~lvgG~e~~~~p~~~~~~~~~~~l~~~~~~~~~~~rpfd~~~~G~v~gEGaaa 293 (468)
.+..+|++++.||..|..+|++|.++.+||+|+|..... ++ ..+..++||||+|
T Consensus 111 dv~~aC~gg~~AL~~A~~~i~sg~~~~vLVvg~e~~s~~-------------------------~~-~~~~~lfGDGA~A 164 (388)
T 3v4n_A 111 EIKEAXYGATAGLQLAKNHVALHPDKKVLVVAADIAKYG-------------------------LN-SGGEPTQGAGAVA 164 (388)
T ss_dssp EEESGGGHHHHHHHHHHHHHHHCTTCEEEEEEEEEECCC-------------------------TT-CTTGGGCEEEEEE
T ss_pred ehhhhhhHHHHHHHHHHHHHhcCCCCEEEEEEehhhccc-------------------------CC-CCCCCccccceeE
Confidence 999999999999999999999999999999999972110 11 1224789999999
Q ss_pred EEecchhHHHhcCCceEEEEEE-EEEcCCCCCCCCCC------CCh--------HHHHHHHHHHHHHcCCCCCCcCEEEE
Q 012221 294 LVMESLEHAMKRGAPIIAEYLG-GAVNCDAYHMTDPR------ADG--------LGVSSCIESSLEDAGVSPEEVNYINA 358 (468)
Q Consensus 294 vvL~~~~~A~~~g~~i~a~i~g-~~~~~d~~~~~~~~------~~~--------~~~~~~i~~al~~Agl~~~dId~v~~ 358 (468)
+||++.+ .++..-.+ .+...+......|. .++ ..+..+++++|+++|++++|||++..
T Consensus 165 ~ll~~~~-------~il~~~~~~~~~~~~~~df~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~g~~~~did~~v~ 237 (388)
T 3v4n_A 165 MLVSSEP-------RILALKEDNVMLTQDIYDFWRPTGHPYPMVDGPLSNETYIQSFAQVWDEHKKRTGLDFADYDALAF 237 (388)
T ss_dssp EEEEESC-------SSEEECSCCEEEECCCCSEECBTTCSSCEECHHHHHHHHHHHHHHHHHHHHHHHCCCGGGCSEEEE
T ss_pred EEeecCC-------CceEEeccccccchhccccccCCCCCCceeccHhHHHHHHHHHHHHHHHHHHHhCCCHHHCCEEEe
Confidence 9998742 22211111 11111211111111 122 35566799999999999999999999
Q ss_pred ccCCCccCCHHH---H----HHHHHHhcc-CCCceeeecccccCccccchhHHHHHHHH
Q 012221 359 HATSTLAGDLAE---I----NAIKKVFKN-TTGIKINATKSMIGHCLGAAGGLEAIATV 409 (468)
Q Consensus 359 h~~gt~~~D~~E---~----~al~~~f~~-~~~~~v~s~k~~~Gh~~~AsG~~~l~~~~ 409 (468)
|...++..-..- + +.+.+.++. ..+ ....-..+||+.+||=.+.|..++
T Consensus 238 Hqp~~k~~~ka~~ril~~~~~~~~~~l~~~~e~--~~~~~~~~GN~~sASi~l~L~~~l 294 (388)
T 3v4n_A 238 HIPYTKMGKKALLAKISDQTEAEQERILARYEE--SIIYSRRVGNLYTGSLYLGLISLL 294 (388)
T ss_dssp CCSSHHHHHHHHHHHSTTSCHHHHHHHHHHHHH--HTTTGGGTCCCGGGHHHHHHHHHH
T ss_pred CCCcchHHHHHHHHHHhcccHHHHHHhCCCHHH--HhhHHHhcCchHHHHHHHHHHHHH
Confidence 985543211100 0 112222221 001 122446679999888666555544
|
| >3lma_A Stage V sporulation protein AD (spovad); NESG, structural genomics, PSI-2, protein structure initiative; 1.99A {Bacillus licheniformis} PDB: 3lm6_A | Back alignment and structure |
|---|
Probab=99.56 E-value=4.8e-13 Score=128.25 Aligned_cols=187 Identities=22% Similarity=0.264 Sum_probs=118.9
Q ss_pred HHHHHHHHHHHHHHHcCCCCccccccccccceEEEeecCCCccchHHHHHHHHHhCCCCcCCcCcchhhhhhhHHHHhhh
Q 012221 126 CLRYCIVAGKKALEDADLGADISKKIDKERAGVLVGTGMGGLTVFSDGVQALIEKGHRKITPFFIPYAITNMGSALLAID 205 (468)
Q Consensus 126 ~~~l~l~a~~~AL~dAgl~~~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~ia~~ 205 (468)
...|+.+|+++||++||+ +++++| .+++|+... .. ..+..++..
T Consensus 55 ~sdLa~~Aa~~AL~~AGi---~~~DID----~II~gt~t~----------------------q~-------~~A~~va~~ 98 (347)
T 3lma_A 55 ERKLMEDAVQSALSKQNL---KKEDID----IFLAGDLLN----------------------QN-------VTANYVARH 98 (347)
T ss_dssp HHHHHHHHHHHHHHTTTC---CGGGCS----EEEEEESSS----------------------SS-------TTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCC---CHHHCC----EEEEEeCCC----------------------ch-------hHHHHHHHH
Confidence 467999999999999999 667777 577776421 00 024455556
Q ss_pred hCCCCcceeecccChHHHHHHHHHHHHHHhCCCCEEEEEeeccccchhhhhHhhhccccccCCCCCCCCCCCCCCCCCCe
Q 012221 206 LGFMGPNYSISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWDKDRDGF 285 (468)
Q Consensus 206 lgl~Gp~~~v~~acas~l~Al~~A~~~I~~G~~d~~lvgG~e~~~~p~~~~~~~~~~~l~~~~~~~~~~~rpfd~~~~G~ 285 (468)
+++ |.+.|+.+|+|++.||..|..+|++|.++.|||+|+|.+.+......|.. . -+..+|... .
T Consensus 99 Lgi--pafdV~~ACsg~~~AL~~Aa~~I~sG~~~~VLVVGaE~~S~aerq~r~p~-----e-----~g~q~p~ta----~ 162 (347)
T 3lma_A 99 LKI--PFLCLFGACSTSMESIAISSALIDGGFAKRALAATSSHNATAERQFRYPT-----E-----YGGQKPGTA----T 162 (347)
T ss_dssp HCC--CEEEBCCSTTHHHHHHHHHHHHHHTTSCSEEEEEEEECGGGTTCCC-----------------------------
T ss_pred hCC--CEEEecChhHHHHHHHHHHHHHHhcCCCCEEEEEEeccccchhhhccCcc-----h-----hcccCCchh----c
Confidence 644 89999999999999999999999999999999999998432211100000 0 011233322 2
Q ss_pred eecceeEEEEecchhHHHhcCCceEEEEEEEEEc--CCCCCCCCCCCCh----HHHHHHHHHHHHHcCCCCCCcCEEEEc
Q 012221 286 VMGEGAGVLVMESLEHAMKRGAPIIAEYLGGAVN--CDAYHMTDPRADG----LGVSSCIESSLEDAGVSPEEVNYINAH 359 (468)
Q Consensus 286 v~gEGaaavvL~~~~~A~~~g~~i~a~i~g~~~~--~d~~~~~~~~~~~----~~~~~~i~~al~~Agl~~~dId~v~~h 359 (468)
..++||+|+||++.. ..+ .|.+.... .| +...+|...+ .....+|++.|+++|++|+|+|+|..+
T Consensus 163 ~t~dGAGA~VL~~~g------~~p--~I~~~t~Gkvvd-~g~~d~~nmg~amaPaA~~ti~~~l~d~g~~~~d~D~ivtg 233 (347)
T 3lma_A 163 STVTGSGAVVLSQQP------GGI--KITSATVGRVID-LGITDSQDMGSAMAPAAADTIKQHLEDLGRTPDDYDLILTG 233 (347)
T ss_dssp -CCCEEEEEEEESSC------CSE--EEEEEECCCCBC-CSCCCTTCHHHHHHHHHHHHHHHHHHHHTCCGGGCSEEEEE
T ss_pred EEccceeEEEEEecC------CCC--ceeeeeeeeeec-cCCCCCCCccccchHHHHHHHHHHHHHhCCCHHHcCEEecC
Confidence 456899999998642 222 24443221 12 2233333333 344567899999999999999999975
Q ss_pred cCCCccCCHHHHHH--HHHHhcc
Q 012221 360 ATSTLAGDLAEINA--IKKVFKN 380 (468)
Q Consensus 360 ~~gt~~~D~~E~~a--l~~~f~~ 380 (468)
|.-++.. +.+++..
T Consensus 234 -------dL~q~g~~il~~l~~~ 249 (347)
T 3lma_A 234 -------DLSGVGSPILKDLLKE 249 (347)
T ss_dssp -------SCHHHHHHHHHHHHHH
T ss_pred -------ChHHHHHHHHHHHHHH
Confidence 4444333 5566543
|
| >3v7i_A Putative polyketide synthase; type III polyketide synthase, acyltransferase, transferase,; 2.90A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=99.49 E-value=4.6e-12 Score=126.70 Aligned_cols=241 Identities=13% Similarity=-0.007 Sum_probs=156.0
Q ss_pred HHHHHHHHHHHHHHHHcCCCCccccccccccceEEEeecCCCccchHHHHHHHHHhCCCCcCCcCcchhhhhhhHHHHhh
Q 012221 125 DCLRYCIVAGKKALEDADLGADISKKIDKERAGVLVGTGMGGLTVFSDGVQALIEKGHRKITPFFIPYAITNMGSALLAI 204 (468)
Q Consensus 125 ~~~~l~l~a~~~AL~dAgl~~~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~ia~ 204 (468)
....|+.+|+++||+++|+ ++++++ .|++++..+. .. ...+.+++.
T Consensus 136 ~~~~La~~Aa~~AL~~agi---~~~dId----~li~~t~t~~----------------------~~-----P~~a~~v~~ 181 (413)
T 3v7i_A 136 AVQAYGERAARGALQIAGL---DVADVD----CLITSNSTTP----------------------AL-----PGLDVALAN 181 (413)
T ss_dssp HHHHHHHHHHHHHHHHHTC---CGGGCC----EEEEECCSSC----------------------CS-----SCHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhCc---CHHHCC----EEEEEccCCC----------------------Cc-----CHHHHHHHH
Confidence 4668999999999999999 666776 6888875321 11 123678889
Q ss_pred hhCCCC--cceee-cccChHHHHHHHHHHHHHHhCCCCEEEEEeeccccchhhhhHhhhccccccCCCCCCCCCCCCCCC
Q 012221 205 DLGFMG--PNYSI-STACATSNYCFYAAANHIRRGEADLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWDKD 281 (468)
Q Consensus 205 ~lgl~G--p~~~v-~~acas~l~Al~~A~~~I~~G~~d~~lvgG~e~~~~p~~~~~~~~~~~l~~~~~~~~~~~rpfd~~ 281 (468)
.+|++. +.+.+ ..+|++++.||..|.++|++|.++.|||+|+|.+.... + ++..
T Consensus 182 ~LGl~~~~~~~~v~~~~Cagg~~AL~~A~~~i~ag~~~~vLvvg~E~~S~~~----------------------~-~~d~ 238 (413)
T 3v7i_A 182 RLPLRGDTMLLPATQWACVAGTRSLALAADLVAADPDRVVLVVISEALSTTY----------------------Q-PADD 238 (413)
T ss_dssp HTTCCTTCEEEEESSCGGGHHHHHHHHHHHHHHHCTTCEEEEEEEECGGGGC----------------------C-SSCC
T ss_pred HhCCCCCceEEEeeCCccHHHHHHHHHHHHHHhcCCCCEEEEEEEecccccc----------------------C-cccc
Confidence 999986 34677 99999999999999999999999999999999732110 1 1111
Q ss_pred CC-----CeeecceeEEEEecchhHHHhcCCceEEEEEEEEEcCCCCCC-------------CCCCC----ChHHHHHHH
Q 012221 282 RD-----GFVMGEGAGVLVMESLEHAMKRGAPIIAEYLGGAVNCDAYHM-------------TDPRA----DGLGVSSCI 339 (468)
Q Consensus 282 ~~-----G~v~gEGaaavvL~~~~~A~~~g~~i~a~i~g~~~~~d~~~~-------------~~~~~----~~~~~~~~i 339 (468)
.. ..++||||+|+||++.+.. ....++.+.......... ...+. ....+..++
T Consensus 239 ~~~~lv~~~LFGDGAaAvvl~~~~~~-----~~~~~l~~~~~~~~p~~~~~~~~~~~~~g~~~~m~~~v~~~v~~~~~~i 313 (413)
T 3v7i_A 239 TLESLIVRLLFADTAVAAVVTGRPRP-----ESVLRLDAAWHHTLPGTRDLHRLETRADGTHFVMDRRGPRAVQETVTAM 313 (413)
T ss_dssp STTHHHHHHHBCCEEEEEEEESSCCT-----TEEEEEEEEEEEECTTCTTSEEEEEETTEEEEEECTTHHHHHHHHHHHH
T ss_pred chhhhhcceeeccccEEEEEEecCCC-----CCCEEEEccccEEeCCCccccCccccCCceEEEECcHHHHHHHHHHHHH
Confidence 11 5689999999999875421 122244444322111000 00000 112355678
Q ss_pred HHHHH------HcCCCCCCcCEEEEccCCCccCCHHHHHHHHHHhc--c-CCCce-eeecccccCccccchhHHHHHHHH
Q 012221 340 ESSLE------DAGVSPEEVNYINAHATSTLAGDLAEINAIKKVFK--N-TTGIK-INATKSMIGHCLGAAGGLEAIATV 409 (468)
Q Consensus 340 ~~al~------~Agl~~~dId~v~~h~~gt~~~D~~E~~al~~~f~--~-~~~~~-v~s~k~~~Gh~~~AsG~~~l~~~~ 409 (468)
+++|+ ++|++ ||++..|..+... ++++.+.++ - .+++. ....-. +||+.+|+=.+.|-.++
T Consensus 314 ~~~L~~~~~~~~~gl~---id~~v~Hq~~~~i-----l~~v~~~Lg~~l~~ek~~~s~~~l~-~GNtssAsi~~~L~~~~ 384 (413)
T 3v7i_A 314 WEWLRVRYEDDPSSWH---PDVLLAHPGGTRV-----LEYMEQTMPDEWPSGLLSYSRDSYT-SGNRGGAAVFDILRRAH 384 (413)
T ss_dssp HHHHHHHTSSSCTTCC---CCEEEEECSSHHH-----HHHHHHHSCSSCCSCSTHHHHHHHT-TCBCGGGHHHHHHHHHH
T ss_pred HHHHhhccccccCCCc---eeEEEECCCChHH-----HHHHHHHhCCCCCHHHhhccceEec-eeChHHHHHHHHHHHHH
Confidence 89999 89987 9999999776654 445556666 2 22221 022334 89988887665555544
Q ss_pred HHHhcCCcCCCCCCCCCCCCCCcccccccccccCccEEEEEcccccCeeeEEEEe
Q 012221 410 KAITTGWLHPSINQFNPEPSVEFDTVANKKQQHEVNVAISNSFGFGGHNSVVAFS 464 (468)
Q Consensus 410 ~~l~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~g~gG~n~~~vl~ 464 (468)
+ +.+. +-..++..+||-|=+-.+++++
T Consensus 385 ---~-~~~~------------------------~Gd~vll~~fG~Glt~~~~ll~ 411 (413)
T 3v7i_A 385 ---D-AGQK------------------------TGSRAVLYAAAPGLTATALEGE 411 (413)
T ss_dssp ---H-HCCC------------------------TTCEEEEEEEETTTEEEEEEEE
T ss_pred ---h-CCCC------------------------CCCEEEEEEECHHHhHhhhheE
Confidence 2 2221 1135666799988777777775
|
| >2p8u_A Hydroxymethylglutaryl-COA synthase, cytoplasmic; hydromethylglutaryl COA, mevalonate pathway, structural GENO structural genomics consortium, SGC; HET: COA; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.5e-12 Score=132.97 Aligned_cols=225 Identities=16% Similarity=0.133 Sum_probs=137.4
Q ss_pred cEEEEeeceeccCC-CCHHHHHHHHHcCCCCccccCCCCCCCCCCccccccCCCCCCCCCCccccccCCHHHHHHHHHHH
Q 012221 57 RVVITGMGLVSVFG-NDVDAYYNKLLDGESGITMIDRFDASKFPTRFGGQIRGFSAEGYIDGKNDRRLDDCLRYCIVAGK 135 (468)
Q Consensus 57 ~V~ItG~g~~~p~g-~~~~~~~~~L~~G~~~i~~~~~~~~~~~~~~~~g~v~~~d~~~~i~~~~~~~~d~~~~l~l~a~~ 135 (468)
.|.|.|+|..+|.- .+.+++.+.+ |.+ +.|-..+. | .....+..+ -.....|+.+|++
T Consensus 24 ~vgI~aig~y~P~~~v~~~el~~~~--g~~-----~~~~~~~~-----G----i~~r~~~~~-----~e~~~~La~~Aa~ 82 (478)
T 2p8u_A 24 DVGIVALEIYFPSQYVDQAELEKYD--GVD-----AGKYTIGL-----G----QAKMGFCTD-----REDINSLCMTVVQ 82 (478)
T ss_dssp CCEEEEEEEECCSEEEEHHHHHHHH--TCC-----TTCCCCCC-----C----CCEEECCCT-----TCCHHHHHHHHHH
T ss_pred ceEEEEEEEECCCeEecHHHHHHHh--CCC-----hhHheccc-----C----ceEEEeCCC-----CCCHHHHHHHHHH
Confidence 58999999999996 6777776653 222 11100010 0 000000011 1235789999999
Q ss_pred HHHHHcCCCCccccccccccceEEEeecCCCccchHHHHHHHHHhCCCCcCCcCcchhhhhhhHHHHhhh---hCCCC-c
Q 012221 136 KALEDADLGADISKKIDKERAGVLVGTGMGGLTVFSDGVQALIEKGHRKITPFFIPYAITNMGSALLAID---LGFMG-P 211 (468)
Q Consensus 136 ~AL~dAgl~~~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~ia~~---lgl~G-p 211 (468)
+||+++|+ ++++++ .+++++..+... ....+..+... +|++. +
T Consensus 83 ~aL~~agi---~~~dId----~li~~T~t~~~~--------------------------~ps~a~~v~~~L~~lG~~~~~ 129 (478)
T 2p8u_A 83 NLMERNNL---SYDCIG----RLEVGTETIIDK--------------------------SKSVKTNLMQLFEESGNTDIE 129 (478)
T ss_dssp HHHHHTTC---CGGGEE----EEEEECSCCSCS--------------------------SSCHHHHHGGGTTTTTCCCCB
T ss_pred HHHHHcCC---CHHHCC----EEEEEccCCccc--------------------------CccHHHHHHHHHhhcCCCCce
Confidence 99999999 555555 466776532210 01125556643 44444 7
Q ss_pred ceeecccChHHHHHHHHHHHHHHhCC--CCEEEEEeeccccchhhhhHhhhccccccCCCCCCCCCCCCCCCCCCeeecc
Q 012221 212 NYSISTACATSNYCFYAAANHIRRGE--ADLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWDKDRDGFVMGE 289 (468)
Q Consensus 212 ~~~v~~acas~l~Al~~A~~~I~~G~--~d~~lvgG~e~~~~p~~~~~~~~~~~l~~~~~~~~~~~rpfd~~~~G~v~gE 289 (468)
.+.+..+|++++.||..|..+|++|. .+.+||+|+|.. . |.......+.||
T Consensus 130 ~~dv~~aC~gg~~AL~~A~~~i~sg~~~~~~aLVV~~Eia----------------~-----------~~~~~~~~~fGd 182 (478)
T 2p8u_A 130 GIDTTNACYGGTAAVFNAVNWIESSSWDGRYALVVAGDIA----------------V-----------YATGNARPTGGV 182 (478)
T ss_dssp CCEEESGGGHHHHHHHHHHHHHTSTTCCSCEEEEEEEEEE----------------C-----------CCSSTTGGGCEE
T ss_pred EEEEcchhHHHHHHHHHHHHHHHcCCccCCEEEEEEeeee----------------c-----------ccCCCCCCcccc
Confidence 78899999999999999999999999 999999999941 0 111123468999
Q ss_pred eeEEEEecchhHHHhcCCceEEE-EEEEEEcCCCCCCCCC-------CCChHHH--------H---HHHHHHHH------
Q 012221 290 GAGVLVMESLEHAMKRGAPIIAE-YLGGAVNCDAYHMTDP-------RADGLGV--------S---SCIESSLE------ 344 (468)
Q Consensus 290 GaaavvL~~~~~A~~~g~~i~a~-i~g~~~~~d~~~~~~~-------~~~~~~~--------~---~~i~~al~------ 344 (468)
||+|+||++.+. + ++.. +.|..+ .+.+....| ..++... . ..+++.++
T Consensus 183 GA~A~Ll~~~~~----~--~l~~~~~gs~~-~~~~d~~~p~~~~~~~~~dG~~s~~~y~~a~~~~~~~~~~~l~~~~~~~ 255 (478)
T 2p8u_A 183 GAVALLIGPNAP----L--IFERGLRGTHM-QHAYDFYKPDMLSEYPIVDGKLSIQCYLSALDRCYSVYCKKIHAQWQKE 255 (478)
T ss_dssp EEEEEEEESSCS----E--EECTTCCEEEE-CCCCSEECCCTTCSSCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeEEEEEecCCC----c--eEeeccceecc-cchhheeeecCCCcceEEcCcchHHHHHHHHHHHHHHHHHHHhhhcccc
Confidence 999999986421 0 1000 012211 122222122 1223211 1 24566666
Q ss_pred --HcCCCCCCcCEEEEccCCCccCCHH
Q 012221 345 --DAGVSPEEVNYINAHATSTLAGDLA 369 (468)
Q Consensus 345 --~Agl~~~dId~v~~h~~gt~~~D~~ 369 (468)
+++++++|||++..|..+.+..+.+
T Consensus 256 ~~~~g~~~~did~~v~H~~~~ki~~~~ 282 (478)
T 2p8u_A 256 GNDKDFTLNDFGFMIFHSPYCKLVQKS 282 (478)
T ss_dssp TCCCCCCGGGCSEEEECCSSHHHHHHH
T ss_pred ccccCCChHHcCEEEecCCcHHHHHHH
Confidence 6799999999999999888765544
|
| >2wya_A Hydroxymethylglutaryl-COA synthase, mitochondrial; steroid biosynthesis, cholesterol biosynthesis, mitochondrion, phosphoprotein; HET: HMG; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.13 E-value=8.3e-10 Score=112.46 Aligned_cols=224 Identities=16% Similarity=0.111 Sum_probs=132.1
Q ss_pred CCCcEEEEeeceeccCC-CCHHHHHHHHHcCCCCccccCCCCCCCCCCccccccCCCCCCCCCCccccccCCHHHHHHHH
Q 012221 54 PKKRVVITGMGLVSVFG-NDVDAYYNKLLDGESGITMIDRFDASKFPTRFGGQIRGFSAEGYIDGKNDRRLDDCLRYCIV 132 (468)
Q Consensus 54 ~~~~V~ItG~g~~~p~g-~~~~~~~~~L~~G~~~i~~~~~~~~~~~~~~~~g~v~~~d~~~~i~~~~~~~~d~~~~l~l~ 132 (468)
|.+.|-|.|+|...|.- .+.+++.+.. |.+ +.|-..+. | .....+.++. .....|++.
T Consensus 2 m~~~VgI~~~g~y~P~~~v~~~~l~~~~--~~~-----~~~i~~~~-----G----i~~r~~~~~~-----E~~~~ma~~ 60 (460)
T 2wya_A 2 MPKDVGILALEVYFPAQYVDQTDLEKYN--NVE-----AGKYTVGL-----G----QTRMGFCSVQ-----EDINSLCLT 60 (460)
T ss_dssp CCSSCEEEEEEEECCSEEEEHHHHHHHT--TCC-----TTCCCCCC-----C----CCEEECCCTT-----CCHHHHHHH
T ss_pred CCCceEEEEEEEECCCeEEcHHHHHHHh--CCC-----HHHHHHhh-----C----cEEEEECCCC-----CCHHHHHHH
Confidence 45679999999999998 5777775532 211 11111111 0 0000001111 124679999
Q ss_pred HHHHHHHHcCCCCccccccccccceEEEeecCCCccchHHHHHHHHHhCCCCcCCcCcchhhhhhhHHHHhhhhCCCC--
Q 012221 133 AGKKALEDADLGADISKKIDKERAGVLVGTGMGGLTVFSDGVQALIEKGHRKITPFFIPYAITNMGSALLAIDLGFMG-- 210 (468)
Q Consensus 133 a~~~AL~dAgl~~~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~ia~~lgl~G-- 210 (468)
|+++||+++|+ ++++++ -++++|..+.. ..+ ..+..+...||+.|
T Consensus 61 Aa~~al~~a~i---~~~~Id----~ii~aT~t~~~---------------------~~p-----s~a~~v~~~l~~~g~~ 107 (460)
T 2wya_A 61 VVQRLMERIQL---PWDSVG----RLEVGTETIID---------------------KSK-----AVKTVLMELFQDSGNT 107 (460)
T ss_dssp HHHHHHHHHTC---CGGGEE----EEEEECSCCSC---------------------SSS-----CHHHHHGGGTGGGTCC
T ss_pred HHHHHHHHcCC---CHHHCC----EEEEEeCCCCC---------------------CCC-----chHHHHHHHHhccCCC
Confidence 99999999999 555555 47777743211 111 12667777787655
Q ss_pred --cceeecccChHHHHHHHHHHHHHHhCCCCEEEEEeeccccchhhhhHhhhccccccCCCCCCCCCCCCCCCCCCeeec
Q 012221 211 --PNYSISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWDKDRDGFVMG 288 (468)
Q Consensus 211 --p~~~v~~acas~l~Al~~A~~~I~~G~~d~~lvgG~e~~~~p~~~~~~~~~~~l~~~~~~~~~~~rpfd~~~~G~v~g 288 (468)
.++.+..+|+++..||..|..+|++|..+.+++..+...+ +. |.........|
T Consensus 108 ~~~a~D~~~aC~g~~~al~~A~~~i~~g~~~~~lvvv~~s~~--------------~~-----------~~d~~~~~~~G 162 (460)
T 2wya_A 108 DIEGIDTTNACYGGTASLFNAANWMESSSWDGRYAMVVCGDI--------------AV-----------YPSGNARPTGG 162 (460)
T ss_dssp CCBCCEEESGGGHHHHHHHHHHHHHTSTTCCSCEEEEEEEEE--------------EC-----------CCSSTTGGGCE
T ss_pred CeeEechhhhhhhHHHHHHHHHHHHHhccccceEEEEEeccc--------------cc-----------cccccccccCc
Confidence 4577899999999999999999999987644333332211 11 12223445779
Q ss_pred ceeEEEEecchhHHHhcCCceEEEE---EEEEEcCCCCC-------CCCCCCChH-------------------HHHHHH
Q 012221 289 EGAGVLVMESLEHAMKRGAPIIAEY---LGGAVNCDAYH-------MTDPRADGL-------------------GVSSCI 339 (468)
Q Consensus 289 EGaaavvL~~~~~A~~~g~~i~a~i---~g~~~~~d~~~-------~~~~~~~~~-------------------~~~~~i 339 (468)
+||++++++..+. + ..+ .+... .+... ...|..++. ....++
T Consensus 163 dGA~A~l~~~~~~-------~-~~~~~~~~~~~-~~~~df~~p~~~s~~~~~dg~~s~~~~~~~g~~v~~~~~~~~~~~~ 233 (460)
T 2wya_A 163 AGAVAMLIGPKAP-------L-ALERGLRGTHM-ENVYDFYKPNLASEYPIVDGKLSIQCYLRALDRCYTSYRKKIQNQW 233 (460)
T ss_dssp EEEEEEEEESSCS-------E-EECTTCCEEEE-CCCCSEECCCTTCSCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHhhhcccCCc-------c-eeecccccccc-cchhhhhccCCCCCCcccCCccchHHHHHhhHHHHHHHHHHHHHHH
Confidence 9999999986432 1 111 11111 11111 111222221 122335
Q ss_pred HHHHHHcCCCCCCcCEEEEccCCCcc
Q 012221 340 ESSLEDAGVSPEEVNYINAHATSTLA 365 (468)
Q Consensus 340 ~~al~~Agl~~~dId~v~~h~~gt~~ 365 (468)
++++++++++++|+|++..|....+.
T Consensus 234 ~~~l~~~~~~~~d~d~~v~Hqp~~r~ 259 (460)
T 2wya_A 234 KQAGSDRPFTLDDLQYMIFHTPFCKM 259 (460)
T ss_dssp HHTTCCCCCCGGGCSEEEECCSSHHH
T ss_pred HHHHHHcCCCHHHHhhhhhcccchHH
Confidence 55667789999999999999877654
|
| >4e1l_A Acetoacetyl-COA thiolase 2; 3-layer(ABA) sandwich, transferase; 2.00A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=84.15 E-value=5.3 Score=38.93 Aligned_cols=100 Identities=9% Similarity=-0.010 Sum_probs=57.5
Q ss_pred EEEEEEEEcCCCCCC-CCCCC-ChHHHHHHHHHHHHHcCCCCCCcCEEEEccCCCccC-CHHHHHHHHHHhccCCCceee
Q 012221 311 AEYLGGAVNCDAYHM-TDPRA-DGLGVSSCIESSLEDAGVSPEEVNYINAHATSTLAG-DLAEINAIKKVFKNTTGIKIN 387 (468)
Q Consensus 311 a~i~g~~~~~d~~~~-~~~~~-~~~~~~~~i~~al~~Agl~~~dId~v~~h~~gt~~~-D~~E~~al~~~f~~~~~~~v~ 387 (468)
+.|.|.+...-+... ..++. ...-..++++++|+++|++++|||.+..- +.+... ...-..-+...++-....+..
T Consensus 7 v~Ivg~~rT~~g~~~~~~~~~~~~~L~~~a~~~Al~~agi~~~~Id~v~~g-~~~~~~~~~~~a~~~~~~lGl~~~~p~~ 85 (395)
T 4e1l_A 7 VVIVSAVRTPIGSFGGVFKNTSAVQLGTIAVKEAISRVGLNLSEIDEVIIG-NVLQTGLGQNVARQIAINAGIPNSVPSY 85 (395)
T ss_dssp EEEEEEEECCCEETTSTTTTSCHHHHHHHHHHHHHHHTTCCGGGCCEEEEE-CCCCSSTTCCHHHHHHHHTTCCTTSCEE
T ss_pred EEEEECccCCccccCCCcCCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEE-eccCCCCcchHHHHHHHHcCCCCCceEE
Confidence 457777665433321 11121 22345678999999999999999987753 222211 112223334444331122221
Q ss_pred ecccccCccccchhHHHHHHHHHHHhcCC
Q 012221 388 ATKSMIGHCLGAAGGLEAIATVKAITTGW 416 (468)
Q Consensus 388 s~k~~~Gh~~~AsG~~~l~~~~~~l~~~~ 416 (468)
.+ +..+++|+..+..+...++.|.
T Consensus 86 ~v-----~~~Css~~~al~~A~~~I~~G~ 109 (395)
T 4e1l_A 86 TV-----NKLCGSGLKSVQLAAQSITSGE 109 (395)
T ss_dssp EE-----CCGGGHHHHHHHHHHHHHHTTS
T ss_pred Ec-----cccchHHHHHHHHHHHHHhCCC
Confidence 11 4567888889999999998874
|
| >4dd5_A Acetyl-COA acetyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, thiolase; 1.25A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=83.98 E-value=5.3 Score=39.03 Aligned_cols=100 Identities=8% Similarity=-0.105 Sum_probs=57.7
Q ss_pred EEEEEEEEcCCCCC-CCCCCCC-hHHHHHHHHHHHHHcCCCCCCcCEEEEccCCCcc-CCHHHHHHHHHHhccCCCceee
Q 012221 311 AEYLGGAVNCDAYH-MTDPRAD-GLGVSSCIESSLEDAGVSPEEVNYINAHATSTLA-GDLAEINAIKKVFKNTTGIKIN 387 (468)
Q Consensus 311 a~i~g~~~~~d~~~-~~~~~~~-~~~~~~~i~~al~~Agl~~~dId~v~~h~~gt~~-~D~~E~~al~~~f~~~~~~~v~ 387 (468)
+.|.|.+...-+.+ ...++.. ..-..++++++|+++|++++|||.|..- +.+.. ....-..-+...++-....+..
T Consensus 9 v~Ivg~~rT~~~~~~~~~~~~~~~~L~~~A~~~AL~~agl~~~dId~vi~g-~~~~~~~~~~~a~~v~~~lGl~~~~p~~ 87 (396)
T 4dd5_A 9 VVIASAARTAVGSFGGAFKSVSAVELGVTAAKEAIKRANITPDMIDESLLG-GVLTAGLGQNIARQIALGAGIPVEKPAM 87 (396)
T ss_dssp EEEEEEEECCCEETTSTTTTSCHHHHHHHHHHHHHHHTTCCGGGCCEEEEE-CSCCTTSCSCHHHHHHHHTTCCTTSCEE
T ss_pred EEEEEcccCCeeecCCCCCCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEE-eecCCCCCchHHHHHHHHcCCCCCceEE
Confidence 45777776543332 1122222 2345678999999999999999998763 22221 1122233344444432122222
Q ss_pred ecccccCccccchhHHHHHHHHHHHhcCC
Q 012221 388 ATKSMIGHCLGAAGGLEAIATVKAITTGW 416 (468)
Q Consensus 388 s~k~~~Gh~~~AsG~~~l~~~~~~l~~~~ 416 (468)
.+ +..+++|+..+..+...++.|.
T Consensus 88 ~v-----~~aCss~~~al~~A~~~I~~G~ 111 (396)
T 4dd5_A 88 TI-----NIVCGSGLRSVSMASQLIALGD 111 (396)
T ss_dssp EE-----CCGGGHHHHHHHHHHHHHHHTS
T ss_pred Ee-----ccccHHHHHHHHHHHHHHhcCC
Confidence 21 3467788888888888888773
|
| >4dfe_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; ssgcid, seattle structural genomics center for infectious DI transferase; 2.35A {Burkholderia xenovorans} | Back alignment and structure |
|---|
Probab=80.58 E-value=4.1 Score=38.73 Aligned_cols=77 Identities=12% Similarity=0.014 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHcCCCCCCcCEEEEccCCCc-cCCHHHHHHHHHHhccCCCceeeecccccCccccchhHHHHHHHHHH
Q 012221 333 LGVSSCIESSLEDAGVSPEEVNYINAHATSTL-AGDLAEINAIKKVFKNTTGIKINATKSMIGHCLGAAGGLEAIATVKA 411 (468)
Q Consensus 333 ~~~~~~i~~al~~Agl~~~dId~v~~h~~gt~-~~D~~E~~al~~~f~~~~~~~v~s~k~~~Gh~~~AsG~~~l~~~~~~ 411 (468)
.-..++++++|+++|++++|||.|... +.++ ...+.-..-+...++-...++...+ +...++|+..+..+...
T Consensus 67 ~la~~Aa~~al~~ag~~~~~Id~vi~~-t~~~~~~~p~~a~~v~~~lgl~~~~~~~~v-----~~~C~s~~~al~~A~~~ 140 (333)
T 4dfe_A 67 DLAFIASQRAIEAADIDPQSIDLIIVA-TSTPDFVFPSTACLLQNKLGIRNHGAAFDV-----QAVCSGFAYAVATADSF 140 (333)
T ss_dssp HHHHHHHHHHHHHHTCCGGGCCEEEEE-CSSCSSSBSCHHHHHHHHTTCCSCCEEEEE-----ECGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHCCEEEEE-eCCCCCCCCcHHHHHHHHhCCCCCCcEEEe-----CcccHHHHHHHHHHHHH
Confidence 345678999999999999999987653 3332 1112223345555543222332222 24667778888888888
Q ss_pred HhcC
Q 012221 412 ITTG 415 (468)
Q Consensus 412 l~~~ 415 (468)
++.|
T Consensus 141 i~~g 144 (333)
T 4dfe_A 141 IRSG 144 (333)
T ss_dssp HHTT
T ss_pred HHcC
Confidence 8876
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 468 | ||||
| d1j3na1 | 249 | c.95.1.1 (A:1-249) Beta-ketoacyl-ACP synthase II { | 2e-77 | |
| d2gfva1 | 250 | c.95.1.1 (A:2-251) Beta-ketoacyl-ACP synthase II { | 3e-74 | |
| d1e5ma1 | 250 | c.95.1.1 (A:6-255) Beta-ketoacyl-ACP synthase II { | 1e-66 | |
| d1ox0a1 | 256 | c.95.1.1 (A:-5-251) Beta-ketoacyl-ACP synthase II | 3e-62 | |
| d2vbaa1 | 253 | c.95.1.1 (A:1-253) Beta-ketoacyl-ACP synthase I {E | 1e-58 | |
| d2ix4a1 | 270 | c.95.1.1 (A:31-300) Beta-ketoacyl-ACP synthase II | 2e-55 | |
| d1tqya2 | 205 | c.95.1.1 (A:219-423) Actinorhodin polyketide putat | 1e-45 | |
| d1tqyb2 | 194 | c.95.1.1 (B:210-403) Actinorhodin polyketide putat | 3e-37 | |
| d1tqya1 | 216 | c.95.1.1 (A:3-218) Actinorhodin polyketide putativ | 2e-36 | |
| d2ix4a2 | 161 | c.95.1.1 (A:301-461) Beta-ketoacyl-ACP synthase II | 3e-36 | |
| d1e5ma2 | 161 | c.95.1.1 (A:256-416) Beta-ketoacyl-ACP synthase II | 1e-35 | |
| d1tqyb1 | 208 | c.95.1.1 (B:2-209) Actinorhodin polyketide putativ | 7e-34 | |
| d1ox0a2 | 158 | c.95.1.1 (A:252-409) Beta-ketoacyl-ACP synthase II | 3e-32 | |
| d2gfva2 | 161 | c.95.1.1 (A:252-412) Beta-ketoacyl-ACP synthase II | 4e-32 | |
| d1j3na2 | 159 | c.95.1.1 (A:250-408) Beta-ketoacyl-ACP synthase II | 7e-32 | |
| d2vbaa2 | 151 | c.95.1.1 (A:254-404) Beta-ketoacyl-ACP synthase I | 7e-30 |
| >d1j3na1 c.95.1.1 (A:1-249) Beta-ketoacyl-ACP synthase II {Thermus thermophilus [TaxId: 274]} Length = 249 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Beta-ketoacyl-ACP synthase II species: Thermus thermophilus [TaxId: 274]
Score = 240 bits (613), Expect = 2e-77
Identities = 121/252 (48%), Positives = 165/252 (65%), Gaps = 4/252 (1%)
Query: 56 KRVVITGMGLVSVFGNDVDAYYNKLLDGESGITMIDRFDASKFPTRFGGQIRGFSAEGYI 115
+RVV+TG+G ++ G +A++ L G+SG+ I RFDAS P R ++ Y+
Sbjct: 2 RRVVVTGLGALTPIGVGQEAFHKAQLAGKSGVRPITRFDASALPVRIAAEVD-VDPGAYL 60
Query: 116 DGKNDRRLDDCLRYCIVAGKKALEDADLGADISKKIDKERAGVLVGTGMGGLTVFSDGVQ 175
D K RRLD ++Y ++A + ALEDA L + +D ER G LVGTG+GG+ + +
Sbjct: 61 DRKELRRLDRFVQYALIAAQLALEDAGLKPE---DLDPERVGTLVGTGIGGMETWEAQSR 117
Query: 176 ALIEKGHRKITPFFIPYAITNMGSALLAIDLGFMGPNYSISTACATSNYCFYAAANHIRR 235
+E+G +I+PFFIP I NM SA +A+ GF GP+ ++ TACAT +A I+
Sbjct: 118 VFLERGPNRISPFFIPMMIANMASAHIAMRYGFTGPSSTVVTACATGADALGSALRMIQL 177
Query: 236 GEADLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWDKDRDGFVMGEGAGVLV 295
GEADL+LAGGTEAAI P+ +G F RALS RN++P+ ASRP+ RDGFVMGEGAGVLV
Sbjct: 178 GEADLVLAGGTEAAITPMAIGAFAVMRALSTRNEEPEKASRPFTLSRDGFVMGEGAGVLV 237
Query: 296 MESLEHAMKRGA 307
+E+ EHA KRGA
Sbjct: 238 LEAYEHAKKRGA 249
|
| >d2gfva1 c.95.1.1 (A:2-251) Beta-ketoacyl-ACP synthase II {Escherichia coli [TaxId: 562]} Length = 250 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Beta-ketoacyl-ACP synthase II species: Escherichia coli [TaxId: 562]
Score = 231 bits (590), Expect = 3e-74
Identities = 120/253 (47%), Positives = 171/253 (67%), Gaps = 3/253 (1%)
Query: 55 KKRVVITGMGLVSVFGNDVDAYYNKLLDGESGITMIDRFDASKFPTRFGGQIRGFSAEGY 114
K+RVV+TG+G++S GN V++ + LL G+SGI++ID FD S + T+F G ++ F+ E
Sbjct: 1 KRRVVVTGLGMLSPVGNTVESTWKALLAGQSGISLIDHFDTSAYATKFAGLVKDFNCEDI 60
Query: 115 IDGKNDRRLDDCLRYCIVAGKKALEDADLGADISKKIDKERAGVLVGTGMGGLTVFSDGV 174
I K R++D ++Y IVAG +A++D+ L + + R G +G+G+GGL + +
Sbjct: 61 ISRKEQRKMDAFIQYGIVAGVQAMQDSGLEIT---EENATRIGAAIGSGIGGLGLIEENH 117
Query: 175 QALIEKGHRKITPFFIPYAITNMGSALLAIDLGFMGPNYSISTACATSNYCFYAAANHIR 234
+L+ G RKI+PFF+P I NM + L I G GP+ SI+TA + + AA I
Sbjct: 118 TSLMNGGPRKISPFFVPSTIVNMVAGHLTIMYGLRGPSISIATAQTSGVHNIGHAARIIA 177
Query: 235 RGEADLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWDKDRDGFVMGEGAGVL 294
G+AD+M+AGG E A P+G+GGF A RALS RND+PQ ASRPWDK+RDGFV+G+GAG+L
Sbjct: 178 YGDADVMVAGGAEKASTPLGVGGFGAARALSTRNDNPQAASRPWDKERDGFVLGDGAGML 237
Query: 295 VMESLEHAMKRGA 307
V+E EHA KRGA
Sbjct: 238 VLEEYEHAKKRGA 250
|
| >d1e5ma1 c.95.1.1 (A:6-255) Beta-ketoacyl-ACP synthase II {Synechocystis sp. [TaxId: 1143]} Length = 250 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Beta-ketoacyl-ACP synthase II species: Synechocystis sp. [TaxId: 1143]
Score = 212 bits (539), Expect = 1e-66
Identities = 118/253 (46%), Positives = 163/253 (64%), Gaps = 3/253 (1%)
Query: 55 KKRVVITGMGLVSVFGNDVDAYYNKLLDGESGITMIDRFDASKFPTRFGGQIRGFSAEGY 114
KKRVV+TG+G ++ GN + Y+ L++G +GI I RFDAS RFGG+++ F A +
Sbjct: 1 KKRVVVTGLGAITPIGNTLQDYWQGLMEGRNGIGPITRFDASDQACRFGGEVKDFDATQF 60
Query: 115 IDGKNDRRLDDCLRYCIVAGKKALEDADLGADISKKIDKERAGVLVGTGMGGLTVFSDGV 174
+D K +R+D + + A ++A+ DA L + +++ + GVL+GTG+GGL V D
Sbjct: 61 LDRKEAKRMDRFCHFAVCASQQAINDAKLVIN---ELNADEIGVLIGTGIGGLKVLEDQQ 117
Query: 175 QALIEKGHRKITPFFIPYAITNMGSALLAIDLGFMGPNYSISTACATSNYCFYAAANHIR 234
L++KG + +PF IP I NM S L AI+LG GPN TACA + A ++
Sbjct: 118 TILLDKGPSRCSPFMIPMMIANMASGLTAINLGAKGPNNCTVTACAAGSNAIGDAFRLVQ 177
Query: 235 RGEADLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWDKDRDGFVMGEGAGVL 294
G A M+ GGTEAAI P+ GF + RALS RNDDP ASRP+DKDRDGFVMGEG+G+L
Sbjct: 178 NGYAKAMICGGTEAAITPLSYAGFASARALSFRNDDPLHASRPFDKDRDGFVMGEGSGIL 237
Query: 295 VMESLEHAMKRGA 307
++E LE A+ RGA
Sbjct: 238 ILEELESALARGA 250
|
| >d1ox0a1 c.95.1.1 (A:-5-251) Beta-ketoacyl-ACP synthase II {Streptococcus pneumoniae [TaxId: 1313]} Length = 256 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Beta-ketoacyl-ACP synthase II species: Streptococcus pneumoniae [TaxId: 1313]
Score = 200 bits (510), Expect = 3e-62
Identities = 108/260 (41%), Positives = 155/260 (59%), Gaps = 4/260 (1%)
Query: 48 PKREKDPKKRVVITGMGLVSVFGNDVDAYYNKLLDGESGITMIDRFDASKFPTRFGGQIR 107
P+ RVV+TG G+ S GN + ++N L G+ GI I +FD S F +I+
Sbjct: 1 PRGSHMKLNRVVVTGYGVTSPIGNTPEEFWNSLATGKIGIGGITKFDHSDFDVHNAAEIQ 60
Query: 108 GFSAEGYIDGKNDRRLDDCLRYCIVAGKKALEDADLGADISKKIDKERAGVLVGTGMGGL 167
F + Y K+ R D+ Y + A ++A+ A+L + ++++R GV+V +G+GG+
Sbjct: 61 DFPFDKYFVKKDTNRFDNYSLYALYAAQEAVNHANLDVE---ALNRDRFGVIVASGIGGI 117
Query: 168 TVFSDGVQALIEKGHRKITPFFIPYAITNMGSALLAIDLGFMGPNYSISTACATSNYCFY 227
D V L EKG +++ P +P A+ NM S +A+ G G SI+TAC++SN
Sbjct: 118 KEIEDQVLRLHEKGPKRVKPMTLPKALPNMASGNVAMRFGANGVCKSINTACSSSNDAIG 177
Query: 228 AAANHIRRGEADLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWDKDRDGFVM 287
A I+ G D+ML GGTEA+I P + GF A ALS +DP AS P+DKDR+GFVM
Sbjct: 178 DAFRSIKFGFQDVMLVGGTEASITPFAIAGFQALTALS-TTEDPTRASIPFDKDRNGFVM 236
Query: 288 GEGAGVLVMESLEHAMKRGA 307
GEG+G+LV+ESLEHA KRGA
Sbjct: 237 GEGSGMLVLESLEHAEKRGA 256
|
| >d2vbaa1 c.95.1.1 (A:1-253) Beta-ketoacyl-ACP synthase I {Escherichia coli [TaxId: 562]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Beta-ketoacyl-ACP synthase I species: Escherichia coli [TaxId: 562]
Score = 191 bits (486), Expect = 1e-58
Identities = 87/255 (34%), Positives = 128/255 (50%), Gaps = 4/255 (1%)
Query: 56 KRVVITGMGLVSVFGNDVDAYYNKLLDGESGITMIDRFDASKFPTRFGGQIRGFSAEGYI 115
KR VITG+G+VS GN+ L +G SGIT S + G ++ G I
Sbjct: 2 KRAVITGLGIVSSIGNNQQEVLASLREGRSGITFSQELKDSGMRSHVWGNVK-LDTTGLI 60
Query: 116 DGKNDRRLDDCLRYCIVAGKKALEDADLGADISKKIDKERAGVLVGTGMGGLTVFSDGVQ 175
D K R + D Y ++ ++A+ DA + R G++ G+G G G
Sbjct: 61 DRKVVRFMSDASIYAFLSMEQAIADAG--LSPEAYQNNPRVGLIAGSGGGSPRFQVFGAD 118
Query: 176 ALI-EKGHRKITPFFIPYAITNMGSALLAIDLGFMGPNYSISTACATSNYCFYAAANHIR 234
A+ +G + + P+ + A+ + SA LA G NYSIS+ACATS +C A I+
Sbjct: 119 AMRGPRGLKAVGPYVVTKAMASGVSACLATPFKIHGVNYSISSACATSAHCIGNAVEQIQ 178
Query: 235 RGEADLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWDKDRDGFVMGEGAGVL 294
G+ D++ AGG E + ++ ND P+ ASR +D RDGFV+ G G++
Sbjct: 179 LGKQDIVFAGGGEELCWEMACEFDAMGALSTKYNDTPEKASRTYDAHRDGFVIAGGGGMV 238
Query: 295 VMESLEHAMKRGAPI 309
V+E LEHA+ RGA I
Sbjct: 239 VVEELEHALARGAHI 253
|
| >d2ix4a1 c.95.1.1 (A:31-300) Beta-ketoacyl-ACP synthase II {Thale cress (Arabidopsis thaliana), mitochondrial isoform [TaxId: 3702]} Length = 270 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Beta-ketoacyl-ACP synthase II species: Thale cress (Arabidopsis thaliana), mitochondrial isoform [TaxId: 3702]
Score = 183 bits (465), Expect = 2e-55
Identities = 104/272 (38%), Positives = 157/272 (57%), Gaps = 20/272 (7%)
Query: 56 KRVVITGMGLVSVFGNDVDAYYNKLLDGESGITMI--DRFDASKF--------PTRFGGQ 105
+RVV+TG+G+V+ G V+ + +L+DGE GI + D F + +
Sbjct: 1 RRVVVTGLGMVTPLGRGVETTWRRLIDGECGIRGLTLDDLKMKSFDEETKLYTFDQLSSK 60
Query: 106 IRGFSAEGYIDGKNDRRL-------DDCLRYCIVAGKKALEDADLGADISKKIDKERAGV 158
+ F G G+ D L + + Y + A +AL DA+ +++ +KER GV
Sbjct: 61 VAAFVPYGSNPGEFDEALWLNSKAVANFIGYAVCAADEALRDAEWLP--TEEEEKERTGV 118
Query: 159 LVGTGMGGLTVFSDGVQALIEKGHRKITPFFIPYAITNMGSALLAIDLGFMGPNYSISTA 218
+G G+G + + Q + EK R+++PFFIP + NM S +++ GF GPN++ TA
Sbjct: 119 SIGGGIGSICDIVEAAQLICEKRLRRLSPFFIPKILVNMASGHVSMKYGFQGPNHAAVTA 178
Query: 219 CATSNYCFYAAANHIRRGEADLMLAGGTEAAIIPIGLGGFVACRALSQR-NDDPQTASRP 277
CAT + A I+ G+AD+M+AGGTE++I + + GF RALS + N PQ ASRP
Sbjct: 179 CATGAHSIGDATRMIQFGDADVMVAGGTESSIDALSVAGFSRSRALSTKFNSSPQEASRP 238
Query: 278 WDKDRDGFVMGEGAGVLVMESLEHAMKRGAPI 309
+D DRDGFV+GEG+GV+V+E EHA +RGA I
Sbjct: 239 FDCDRDGFVIGEGSGVIVLEEYEHAKRRGAKI 270
|
| >d1tqya2 c.95.1.1 (A:219-423) Actinorhodin polyketide putative beta-ketoacyl synthase 1, KasA {Streptomyces coelicolor [TaxId: 1902]} Length = 205 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Actinorhodin polyketide putative beta-ketoacyl synthase 1, KasA species: Streptomyces coelicolor [TaxId: 1902]
Score = 155 bits (393), Expect = 1e-45
Identities = 73/201 (36%), Positives = 113/201 (56%), Gaps = 1/201 (0%)
Query: 269 DDPQTASRPWDKDRDGFVMGEGAGVLVMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDP 328
DDP+ ASRP+D RDGFV+ EGA + V+E + A+ RGA I AE G A C+AYHMT
Sbjct: 1 DDPEHASRPFDGTRDGFVLAEGAAMFVLEDYDSALARGARIHAEISGYATRCNAYHMTGL 60
Query: 329 RADGLGVSSCIESSLEDAGVSPEEVNYINAHATSTLAGDLAEINAIKKVF-KNTTGIKIN 387
+ADG ++ I +L+++ +++YINAH + T D E A K+ ++ ++
Sbjct: 61 KADGREMAETIRVALDESRTDATDIDYINAHGSGTRQNDRHETAAYKRALGEHARRTPVS 120
Query: 388 ATKSMIGHCLGAAGGLEAIATVKAITTGWLHPSINQFNPEPSVEFDTVANKKQQHEVNVA 447
+ KSM+GH LGA G LE A V A+ G + P+ N +P + D V + ++ ++
Sbjct: 121 SIKSMVGHSLGAIGSLEIAACVLALEHGVVPPTANLRTSDPECDLDYVPLEARERKLRSV 180
Query: 448 ISNSFGFGGHNSVVAFSAFKP 468
++ GFGG S + +
Sbjct: 181 LTVGSGFGGFQSAMVLRDAET 201
|
| >d1tqyb2 c.95.1.1 (B:210-403) Actinorhodin polyketide putative beta-ketoacyl synthase 2, KasB {Streptomyces coelicolor [TaxId: 1902]} Length = 194 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Actinorhodin polyketide putative beta-ketoacyl synthase 2, KasB species: Streptomyces coelicolor [TaxId: 1902]
Score = 133 bits (334), Expect = 3e-37
Identities = 48/197 (24%), Positives = 75/197 (38%), Gaps = 3/197 (1%)
Query: 270 DPQTASRPWDKDRDGFVMGEGAGVLVMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPR 329
DP A P+D+ G+V GEG +LV+E A RG L +
Sbjct: 1 DPDRAYLPFDERAAGYVPGEGGAILVLEDSAAAEARGRHDAYGELA--GCASTFDPAPGS 58
Query: 330 ADGLGVSSCIESSLEDAGVSPEEVNYINAHATSTLAGDLAEINAIKKVFKNTTGIKINAT 389
G+ I +L DAG PE+V+ + A D AE AI +VF + +
Sbjct: 59 GRPAGLERAIRLALNDAGTGPEDVDVVFADGAGVPELDAAEARAIGRVFGREG-VPVTVP 117
Query: 390 KSMIGHCLGAAGGLEAIATVKAITTGWLHPSINQFNPEPSVEFDTVANKKQQHEVNVAIS 449
K+ G G L+ + + ++ G + P+ + D V + + A+
Sbjct: 118 KTTTGRLYSGGGPLDVVTALMSLREGVIAPTAGVTSVPREYGIDLVLGEPRSTAPRTALV 177
Query: 450 NSFGFGGHNSVVAFSAF 466
+ G G NS F
Sbjct: 178 LARGRWGFNSAAVLRRF 194
|
| >d1tqya1 c.95.1.1 (A:3-218) Actinorhodin polyketide putative beta-ketoacyl synthase 1, KasA {Streptomyces coelicolor [TaxId: 1902]} Length = 216 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Actinorhodin polyketide putative beta-ketoacyl synthase 1, KasA species: Streptomyces coelicolor [TaxId: 1902]
Score = 131 bits (330), Expect = 2e-36
Identities = 49/216 (22%), Positives = 86/216 (39%), Gaps = 3/216 (1%)
Query: 56 KRVVITGMGLVSVFGNDVDAYYNKLLDGESGITMIDRFDASKFPTRFGGQIRGFSAEGYI 115
+RVVITG+G+ + GN ++ L G + I FD S + ++ +
Sbjct: 1 RRVVITGVGVRAPGGNGTRQFWELLTSGRTATRRISFFDPSPYRSQVAAEADFDPVAEGF 60
Query: 116 DGKNDRRLDDCLRYCIVAGKKALEDADLGADI---SKKIDKERAGVLVGTGMGGLTVFSD 172
+ R+D ++ + ++A + L D ++ + V T + +
Sbjct: 61 GPRELDRMDRASQFAVACAREAFAASGLDPDTLDPARVGVSLGSAVAAATSLEREYLLLS 120
Query: 173 GVQALIEKGHRKITPFFIPYAITNMGSALLAIDLGFMGPNYSISTACATSNYCFYAAANH 232
E ++ Y + ++ A +A +G GP +ST C + A
Sbjct: 121 DSGRDWEVDAAWLSRHMFDYLVPSVMPAEVAWAVGAEGPVTMVSTGCTSGLDSVGNAVRA 180
Query: 233 IRRGEADLMLAGGTEAAIIPIGLGGFVACRALSQRN 268
I G AD+M AG + I PI + F A RA + RN
Sbjct: 181 IEEGSADVMFAGAADTPITPIVVACFDAIRATTARN 216
|
| >d2ix4a2 c.95.1.1 (A:301-461) Beta-ketoacyl-ACP synthase II {Thale cress (Arabidopsis thaliana), mitochondrial isoform [TaxId: 3702]} Length = 161 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Beta-ketoacyl-ACP synthase II species: Thale cress (Arabidopsis thaliana), mitochondrial isoform [TaxId: 3702]
Score = 129 bits (324), Expect = 3e-36
Identities = 61/159 (38%), Positives = 90/159 (56%), Gaps = 4/159 (2%)
Query: 311 AEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAGVSPEEVNYINAHATSTLAGDLAE 370
AE G ++ DA+H+T P DG G + +L +G+ P +++Y+NAHATST GD E
Sbjct: 2 AELCGYGMSGDAHHITQPPEDGKGAVLAMTRALRQSGLCPNQIDYVNAHATSTPIGDAVE 61
Query: 371 INAIKKVFKNTTGIK---INATKSMIGHCLGAAGGLEAIATVKAITTGWLHPSINQFNPE 427
AIK VF ++TK GH LGAAG +EAI ++ AI G ++N NP+
Sbjct: 62 ARAIKTVFSEHATSGTLAFSSTKGATGHLLGAAGAVEAIFSILAIHHGVAPMTLNVKNPD 121
Query: 428 PSVEFDTVA-NKKQQHEVNVAISNSFGFGGHNSVVAFSA 465
P + + ++ V A+SNSFGFGG N+ + F++
Sbjct: 122 PIFDKRFMPLTTSKKMLVRTAMSNSFGFGGTNASLLFAS 160
|
| >d1e5ma2 c.95.1.1 (A:256-416) Beta-ketoacyl-ACP synthase II {Synechocystis sp. [TaxId: 1143]} Length = 161 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Beta-ketoacyl-ACP synthase II species: Synechocystis sp. [TaxId: 1143]
Score = 127 bits (320), Expect = 1e-35
Identities = 76/160 (47%), Positives = 105/160 (65%), Gaps = 1/160 (0%)
Query: 309 IIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAGVSPEEVNYINAHATSTLAGDL 368
I E +G A+ CDAYH+T P DG G + I +L+D+G+ PE V+YINAH TST A D+
Sbjct: 2 IYGEMVGYAMTCDAYHITAPVPDGRGATRAIAWALKDSGLKPEMVSYINAHGTSTPANDV 61
Query: 369 AEINAIKKVF-KNTTGIKINATKSMIGHCLGAAGGLEAIATVKAITTGWLHPSINQFNPE 427
E AIK+ + I +++TKSM GH LG +GG+EA+ATV AI + P+IN NP+
Sbjct: 62 TETRAIKQALGNHAYNIAVSSTKSMTGHLLGGSGGIEAVATVMAIAEDKVPPTINLENPD 121
Query: 428 PSVEFDTVANKKQQHEVNVAISNSFGFGGHNSVVAFSAFK 467
P + D V + + V+VA+SNSFGFGGHN +AF ++
Sbjct: 122 PECDLDYVPGQSRALIVDVALSNSFGFGGHNVTLAFKKYQ 161
|
| >d1tqyb1 c.95.1.1 (B:2-209) Actinorhodin polyketide putative beta-ketoacyl synthase 2, KasB {Streptomyces coelicolor [TaxId: 1902]} Length = 208 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Actinorhodin polyketide putative beta-ketoacyl synthase 2, KasB species: Streptomyces coelicolor [TaxId: 1902]
Score = 124 bits (311), Expect = 7e-34
Identities = 55/208 (26%), Positives = 96/208 (46%), Gaps = 4/208 (1%)
Query: 58 VVITGMGLVSVFGNDVDAYYNKLLDGESGITMIDRFDASKFPTRFGGQIRGFSAEGYIDG 117
V+ITG+G+V+ G + Y++ +LDG G+ + RFD S++P GQI F A +I G
Sbjct: 2 VLITGVGVVAPNGLGLAPYWSAVLDGRHGLGPVTRFDVSRYPATLAGQIDDFHAPDHIPG 61
Query: 118 KNDRRLDDCLRYCIVAGKKALEDADLGADISKKIDKERAGVLVGTGMGGLTVFSDGVQAL 177
+ + D R + A AL+DA + + GV+ GG + L
Sbjct: 62 RLLPQTDPSTRLALTAADWALQDAKADPES---LTDYDMGVVTANACGGFDFTHREFRKL 118
Query: 178 IEKGHRKITPFFIPYAITNMGSALLAIDLGFMGPNYSISTACATSNYCFYAAANHIRRGE 237
+G + ++ + + + ++I G GP+ ++ A A IRRG
Sbjct: 119 WSEGPKSVSVYESFAWFYAVNTGQISIRHGMRGPSSALVAEQAGGLDALGHARRTIRRG- 177
Query: 238 ADLMLAGGTEAAIIPIGLGGFVACRALS 265
L+++GG ++A+ P G +A +S
Sbjct: 178 TPLVVSGGVDSALDPWGWVSQIASGRIS 205
|
| >d1ox0a2 c.95.1.1 (A:252-409) Beta-ketoacyl-ACP synthase II {Streptococcus pneumoniae [TaxId: 1313]} Length = 158 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Beta-ketoacyl-ACP synthase II species: Streptococcus pneumoniae [TaxId: 1313]
Score = 118 bits (296), Expect = 3e-32
Identities = 66/159 (41%), Positives = 97/159 (61%), Gaps = 2/159 (1%)
Query: 309 IIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAGVSPEEVNYINAHATSTLAGDL 368
I+AE +G CDAYHMT P +G G I+ +LE+A +SPE+V Y+NAH TST A +
Sbjct: 2 ILAEVVGYGNTCDAYHMTSPHPEGQGAIKAIKLALEEAEISPEQVAYVNAHGTSTPANEK 61
Query: 369 AEINAIKKVFKNTTGIKINATKSMIGHCLGAAGGLEAIATVKAITTGWLHPSINQFNPEP 428
E AI V + +++TKS GH LGAAG +EAI T++A+ ++ +
Sbjct: 62 GESGAIVAVLGKE--VPVSSTKSFTGHLLGAAGAVEAIVTIEAMRHNFVPMTAGTSEVSD 119
Query: 429 SVEFDTVANKKQQHEVNVAISNSFGFGGHNSVVAFSAFK 467
+E + V + + E+ AISN+FGFGGHN+V+AF ++
Sbjct: 120 YIEANVVYGQGLEKEIPYAISNTFGFGGHNAVLAFKRWE 158
|
| >d2gfva2 c.95.1.1 (A:252-412) Beta-ketoacyl-ACP synthase II {Escherichia coli [TaxId: 562]} Length = 161 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Beta-ketoacyl-ACP synthase II species: Escherichia coli [TaxId: 562]
Score = 118 bits (296), Expect = 4e-32
Identities = 63/158 (39%), Positives = 97/158 (61%), Gaps = 2/158 (1%)
Query: 309 IIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAGVSPEEVNYINAHATSTLAGDL 368
I AE +G ++ DAYHMT P +G G + + ++L DAG+ ++ Y+NAH TST AGD
Sbjct: 2 IYAELVGFGMSSDAYHMTSPPENGAGAALAMANALRDAGIEASQIGYVNAHGTSTPAGDK 61
Query: 369 AEINAIKKVFKNT-TGIKINATKSMIGHCLGAAGGLEAIATVKAITTGWLHPSINQFNPE 427
AE A+K +F + + +++TKSM GH LGAAG +E+I ++ A+ + P+IN NP+
Sbjct: 62 AEAQAVKTIFGEAASRVLVSSTKSMTGHLLGAAGAVESIYSILALRDQAVPPTINLDNPD 121
Query: 428 PSVEFDTVANK-KQQHEVNVAISNSFGFGGHNSVVAFS 464
+ D V ++ +Q + + NSFGFGG N + F
Sbjct: 122 EGCDLDFVPHEARQVSGMEYTLCNSFGFGGTNGSLIFK 159
|
| >d1j3na2 c.95.1.1 (A:250-408) Beta-ketoacyl-ACP synthase II {Thermus thermophilus [TaxId: 274]} Length = 159 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Beta-ketoacyl-ACP synthase II species: Thermus thermophilus [TaxId: 274]
Score = 117 bits (294), Expect = 7e-32
Identities = 76/157 (48%), Positives = 113/157 (71%), Gaps = 2/157 (1%)
Query: 309 IIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAGVSPEEVNYINAHATSTLAGDL 368
I AE +G + DA+H+T+P +G G + + +L+DAG++PE+V YINAH TST GD
Sbjct: 2 IYAELVGFGRSADAHHITEPHPEGKGAALAMARALKDAGIAPEQVGYINAHGTSTPVGDR 61
Query: 369 AEINAIKKVF-KNTTGIKINATKSMIGHCLGAAGGLEAIATVKAITTGWLHPSINQFNPE 427
AE+ AIK+VF + + +++TKSMIGH LGAAG +EAIATV+A+ G + P+IN +P+
Sbjct: 62 AEVLAIKRVFGDHAKRLMVSSTKSMIGHLLGAAGAVEAIATVQALYHGVIPPTINLEDPD 121
Query: 428 PSVEFDTVANKKQQHEVNVAISNSFGFGGHNSVVAFS 464
P ++ D V + ++ +V+ A+SNSF FGGHN+V+AF
Sbjct: 122 PELDLDFVP-EPREAKVDYALSNSFAFGGHNAVLAFK 157
|
| >d2vbaa2 c.95.1.1 (A:254-404) Beta-ketoacyl-ACP synthase I {Escherichia coli [TaxId: 562]} Length = 151 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Beta-ketoacyl-ACP synthase I species: Escherichia coli [TaxId: 562]
Score = 111 bits (279), Expect = 7e-30
Identities = 50/154 (32%), Positives = 77/154 (50%), Gaps = 6/154 (3%)
Query: 311 AEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAGVSPEEVNYINAHATSTLAGDLAE 370
AE +G D M P +G + ++Y+N+H TST GD+ E
Sbjct: 2 AEIVGYGATSDGADMVAPSGEGA-----VRCMKMAMHGVDTPIDYLNSHGTSTPVGDVKE 56
Query: 371 INAIKKVFKNTTGIKINATKSMIGHCLGAAGGLEAIATVKAITTGWLHPSINQFNPEPSV 430
+ AI++VF + + I+ATK+M GH LGAAG EAI ++ + G++ PSIN +
Sbjct: 57 LAAIREVFGDKS-PAISATKAMTGHSLGAAGVQEAIYSLLMLEHGFIAPSINIEELDEQA 115
Query: 431 EFDTVANKKQQHEVNVAISNSFGFGGHNSVVAFS 464
+ + E+ +SNSFGFGG N+ +
Sbjct: 116 AGLNIVTETTDRELTTVMSNSFGFGGTNATLVMR 149
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 468 | |||
| d2gfva1 | 250 | Beta-ketoacyl-ACP synthase II {Escherichia coli [T | 100.0 | |
| d1ox0a1 | 256 | Beta-ketoacyl-ACP synthase II {Streptococcus pneum | 100.0 | |
| d1j3na1 | 249 | Beta-ketoacyl-ACP synthase II {Thermus thermophilu | 100.0 | |
| d1e5ma1 | 250 | Beta-ketoacyl-ACP synthase II {Synechocystis sp. [ | 100.0 | |
| d1tqya2 | 205 | Actinorhodin polyketide putative beta-ketoacyl syn | 100.0 | |
| d1tqyb2 | 194 | Actinorhodin polyketide putative beta-ketoacyl syn | 100.0 | |
| d2vbaa1 | 253 | Beta-ketoacyl-ACP synthase I {Escherichia coli [Ta | 100.0 | |
| d2ix4a1 | 270 | Beta-ketoacyl-ACP synthase II {Thale cress (Arabid | 100.0 | |
| d1ox0a2 | 158 | Beta-ketoacyl-ACP synthase II {Streptococcus pneum | 100.0 | |
| d1e5ma2 | 161 | Beta-ketoacyl-ACP synthase II {Synechocystis sp. [ | 100.0 | |
| d1tqyb1 | 208 | Actinorhodin polyketide putative beta-ketoacyl syn | 100.0 | |
| d2gfva2 | 161 | Beta-ketoacyl-ACP synthase II {Escherichia coli [T | 100.0 | |
| d1j3na2 | 159 | Beta-ketoacyl-ACP synthase II {Thermus thermophilu | 100.0 | |
| d2ix4a2 | 161 | Beta-ketoacyl-ACP synthase II {Thale cress (Arabid | 100.0 | |
| d1tqya1 | 216 | Actinorhodin polyketide putative beta-ketoacyl syn | 100.0 | |
| d2vbaa2 | 151 | Beta-ketoacyl-ACP synthase I {Escherichia coli [Ta | 100.0 | |
| d1teda_ | 372 | Polyketide synthase PKS18 {Mycobacterium tuberculo | 99.59 | |
| d1m3ka1 | 268 | Biosynthetic thiolase {Zoogloea ramigera [TaxId: 3 | 99.43 | |
| d1ulqa1 | 273 | Beta-ketoadipyl CoA thiolase {Thermus thermophilus | 99.37 | |
| d1wdkc1 | 262 | Fatty oxidation complex beta subunit (3-ketoacyl-C | 99.37 | |
| d1afwa2 | 124 | Thiolase {Baker's yeast (Saccharomyces cerevisiae) | 99.36 | |
| d1afwa1 | 269 | Thiolase {Baker's yeast (Saccharomyces cerevisiae) | 99.31 | |
| d1ulqa2 | 125 | Beta-ketoadipyl CoA thiolase {Thermus thermophilus | 99.28 | |
| d1wdkc2 | 128 | Fatty oxidation complex beta subunit (3-ketoacyl-C | 99.28 | |
| d1u6ea1 | 184 | Ketoacyl-ACP synthase III (FabH) {Mycobacterium tu | 99.28 | |
| d1m3ka2 | 124 | Biosynthetic thiolase {Zoogloea ramigera [TaxId: 3 | 99.26 | |
| d1mzja1 | 181 | Priming beta-ketosynthase from the r1128 polyketid | 99.24 | |
| d1ub7a1 | 172 | Ketoacyl-ACP synthase III (FabH) {Thermus thermoph | 99.24 | |
| d1hnja1 | 174 | Ketoacyl-ACP synthase III (FabH) {Escherichia coli | 99.23 | |
| d1u0ma1 | 200 | Putative polyketide synthase SCO1206 {Streptomyces | 98.92 | |
| d1bi5a1 | 235 | Chalcone synthase {Alfalfa (Medicago sativa) [TaxI | 98.81 | |
| d1xpma1 | 166 | 3-hydroxy-3-methylglutaryl CoA synthase MvaS {Stap | 98.79 | |
| d1u6ea2 | 148 | Ketoacyl-ACP synthase III (FabH) {Mycobacterium tu | 97.27 | |
| d1ub7a2 | 149 | Ketoacyl-ACP synthase III (FabH) {Thermus thermoph | 96.75 | |
| d1mzja2 | 153 | Priming beta-ketosynthase from the r1128 polyketid | 96.43 | |
| d1hnja2 | 143 | Ketoacyl-ACP synthase III (FabH) {Escherichia coli | 96.41 | |
| d1u0ma2 | 148 | Putative polyketide synthase SCO1206 {Streptomyces | 94.46 | |
| d1ee0a2 | 160 | Pyrone synthase (PyS, chalcone synthase 2) {Gerber | 93.05 | |
| d1bi5a2 | 154 | Chalcone synthase {Alfalfa (Medicago sativa) [TaxI | 92.94 | |
| d1u0ua2 | 156 | Dihydropinosylvin synthase {Scots pine (Pinus sylv | 90.68 | |
| d1u0ma1 | 200 | Putative polyketide synthase SCO1206 {Streptomyces | 86.08 | |
| d1ub7a1 | 172 | Ketoacyl-ACP synthase III (FabH) {Thermus thermoph | 83.45 |
| >d2gfva1 c.95.1.1 (A:2-251) Beta-ketoacyl-ACP synthase II {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Beta-ketoacyl-ACP synthase II species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=6.6e-52 Score=389.73 Aligned_cols=250 Identities=48% Similarity=0.843 Sum_probs=239.8
Q ss_pred CCcEEEEeeceeccCCCCHHHHHHHHHcCCCCccccCCCCCCCCCCccccccCCCCCCCCCCccccccCCHHHHHHHHHH
Q 012221 55 KKRVVITGMGLVSVFGNDVDAYYNKLLDGESGITMIDRFDASKFPTRFGGQIRGFSAEGYIDGKNDRRLDDCLRYCIVAG 134 (468)
Q Consensus 55 ~~~V~ItG~g~~~p~g~~~~~~~~~L~~G~~~i~~~~~~~~~~~~~~~~g~v~~~d~~~~i~~~~~~~~d~~~~l~l~a~ 134 (468)
++||||||||+++|+|.++++||++|++|+++|+++++|+...++.++++.+++|+.++.+.+++.++||++++|++.++
T Consensus 1 ~rrVaItG~G~vtp~G~~~~~~w~~L~~G~s~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~l~aa 80 (250)
T d2gfva1 1 KRRVVVTGLGMLSPVGNTVESTWKALLAGQSGISLIDHFDTSAYATKFAGLVKDFNCEDIISRKEQRKMDAFIQYGIVAG 80 (250)
T ss_dssp CCCEEEEEEEEEBTTBSSHHHHHHHHHTTCCCEEECCSSCCTTCSCCEEECCTTCCCTTTSCHHHHTTSCHHHHHHHHHH
T ss_pred CCeEEEECCeeECCCcCCHHHHHHHHHcCCCeeecCCcccccccCCccceecccchhhhhhhhHHHhhcCHHHHHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999988899999999999999999999
Q ss_pred HHHHHHcCCCCccccccccccceEEEeecCCCccchHHHHHHHHHhCCCCcCCcCcchhhhhhhHHHHhhhhCCCCccee
Q 012221 135 KKALEDADLGADISKKIDKERAGVLVGTGMGGLTVFSDGVQALIEKGHRKITPFFIPYAITNMGSALLAIDLGFMGPNYS 214 (468)
Q Consensus 135 ~~AL~dAgl~~~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~ia~~lgl~Gp~~~ 214 (468)
++||+|||+ ...+.+..++||++|++.++....+..+..+.......++|..+++.+.|.++++|++.||++||+++
T Consensus 81 ~~Al~dAg~---~~~~~~~~~~gv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~~gl~Gp~~t 157 (250)
T d2gfva1 81 VQAMQDSGL---EITEENATRIGAAIGSGIGGLGLIEENHTSLMNGGPRKISPFFVPSTIVNMVAGHLTIMYGLRGPSIS 157 (250)
T ss_dssp HHHHHHHTC---CCCTTTGGGEEEEEECSSCCHHHHHHHHHHHHHHCGGGSCTTHHHHHSTTHHHHHHHHHTTCCSCEEC
T ss_pred HHHHHhcCC---CccccCccceEEEEeeccCCcchhhhhHHHHhhccccccccchhhhhhhhHHHHHHHHHhCCCCCccc
Confidence 999999999 55677888999999999999888888888898898999999999999999999999999999999999
Q ss_pred ecccChHHHHHHHHHHHHHHhCCCCEEEEEeeccccchhhhhHhhhccccccCCCCCCCCCCCCCCCCCCeeecceeEEE
Q 012221 215 ISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWDKDRDGFVMGEGAGVL 294 (468)
Q Consensus 215 v~~acas~l~Al~~A~~~I~~G~~d~~lvgG~e~~~~p~~~~~~~~~~~l~~~~~~~~~~~rpfd~~~~G~v~gEGaaav 294 (468)
|+++|+||+.||.+|+++|++|++|++||||+|..++|..+..|..++.|+..+++|++.|||||+++||+++|||+++|
T Consensus 158 v~~aCaSg~~Ai~~A~~~i~~G~~d~~lvgg~d~~~~~~~~~~f~~~~~ls~~~~~p~~~~rPFD~~rdG~v~gEGaa~l 237 (250)
T d2gfva1 158 IATAQTSGVHNIGHAARIIAYGDADVMVAGGAEKASTPLGVGGFGAARALSTRNDNPQAASRPWDKERDGFVLGDGAGML 237 (250)
T ss_dssp CCCGGGHHHHHHHHHHHHHHHTSCSEEEEEEEECCCSHHHHHHHHHTTCBCCCTTCHHHHCCTTBTTCCSBCBBCEEEEE
T ss_pred cccccchhhhhhHHHHHHHHcCCcchhhcccchhhcCcHHHHHHHhcccccCCCCCCCCccCCCCCCCCCEeeeeEEEEE
Confidence 99999999999999999999999999999999998999999999999999998888889999999999999999999999
Q ss_pred EecchhHHHhcCC
Q 012221 295 VMESLEHAMKRGA 307 (468)
Q Consensus 295 vL~~~~~A~~~g~ 307 (468)
|||++++|++||+
T Consensus 238 VLE~~~~A~~rGA 250 (250)
T d2gfva1 238 VLEEYEHAKKRGA 250 (250)
T ss_dssp EEEEHHHHHHHTC
T ss_pred EECcHHHHHHCcC
Confidence 9999999999985
|
| >d1j3na1 c.95.1.1 (A:1-249) Beta-ketoacyl-ACP synthase II {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Beta-ketoacyl-ACP synthase II species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=6.7e-51 Score=382.48 Aligned_cols=249 Identities=49% Similarity=0.837 Sum_probs=235.0
Q ss_pred CCcEEEEeeceeccCCCCHHHHHHHHHcCCCCccccCCCCCCCCCCccccccCCCCCCCCCCccccccCCHHHHHHHHHH
Q 012221 55 KKRVVITGMGLVSVFGNDVDAYYNKLLDGESGITMIDRFDASKFPTRFGGQIRGFSAEGYIDGKNDRRLDDCLRYCIVAG 134 (468)
Q Consensus 55 ~~~V~ItG~g~~~p~g~~~~~~~~~L~~G~~~i~~~~~~~~~~~~~~~~g~v~~~d~~~~i~~~~~~~~d~~~~l~l~a~ 134 (468)
|+||||||||+++|.|.++++||++|.+|+++|+++++|+...++.++.+.+ ++.+..++++++.++||+++++++.++
T Consensus 1 M~rVaItG~G~vsp~g~~~~e~w~~l~~G~s~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~l~aa 79 (249)
T d1j3na1 1 MRRVVVTGLGALTPIGVGQEAFHKAQLAGKSGVRPITRFDASALPVRIAAEV-DVDPGAYLDRKELRRLDRFVQYALIAA 79 (249)
T ss_dssp CCCEEEEEEEEEETTEESHHHHHHHHHHTCCCEEECCSSCCTTSSCCEEECC-CCCGGGTSCHHHHTTSCHHHHHHHHHH
T ss_pred CCcEEEECCEeECCCcCCHHHHHHHHHcCCCccccCCccccccCCccccccc-cccccccccHHHHhhCCHHHHHHHHHH
Confidence 5789999999999999999999999999999999999999888888877765 466666788999999999999999999
Q ss_pred HHHHHHcCCCCccccccccccceEEEeecCCCccchHHHHHHHHHhCCCCcCCcCcchhhhhhhHHHHhhhhCCCCccee
Q 012221 135 KKALEDADLGADISKKIDKERAGVLVGTGMGGLTVFSDGVQALIEKGHRKITPFFIPYAITNMGSALLAIDLGFMGPNYS 214 (468)
Q Consensus 135 ~~AL~dAgl~~~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~ia~~lgl~Gp~~~ 214 (468)
++||+|||+ .+++++..|+||++|++.++......+.....+.+.+.++|+.++..+.|.++++|++.||++||+++
T Consensus 80 ~~Al~dAGl---~~~~~~~~~~gv~~Gs~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~is~~~gl~Gp~~t 156 (249)
T d1j3na1 80 QLALEDAGL---KPEDLDPERVGTLVGTGIGGMETWEAQSRVFLERGPNRISPFFIPMMIANMASAHIAMRYGFTGPSST 156 (249)
T ss_dssp HHHHHHHTC---CGGGSCGGGEEEEEECSSCCHHHHHHHHHHHHHHCGGGSCTTHHHHHSTTHHHHHHHHHHTCCSCBCC
T ss_pred HHHHHHcCC---ChhHcCCccEEEEEEECCCcccccccccccccccCccccChhhhccccchhhhhhhHhhcCCCCCccc
Confidence 999999999 66778889999999999999998888888888899999999999999999999999999999999999
Q ss_pred ecccChHHHHHHHHHHHHHHhCCCCEEEEEeeccccchhhhhHhhhccccccCCCCCCCCCCCCCCCCCCeeecceeEEE
Q 012221 215 ISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWDKDRDGFVMGEGAGVL 294 (468)
Q Consensus 215 v~~acas~l~Al~~A~~~I~~G~~d~~lvgG~e~~~~p~~~~~~~~~~~l~~~~~~~~~~~rpfd~~~~G~v~gEGaaav 294 (468)
|+++|+|++.||++|+++|++|++|+|||||+|...+|..+..|...+.|+..++.|++.|||||.++||+++||||+++
T Consensus 157 v~~aCaSsl~Ai~~A~~~i~~G~~d~alvgg~d~~~~p~~~~~f~~~~~ls~~~~~p~~~~rPFd~~~dG~v~gEGa~~l 236 (249)
T d1j3na1 157 VVTACATGADALGSALRMIQLGEADLVLAGGTEAAITPMAIGAFAVMRALSTRNEEPEKASRPFTLSRDGFVMGEGAGVL 236 (249)
T ss_dssp BCCGGGHHHHHHHHHHHHHHTTSCSEEEEEEEECCCSHHHHHHHHHTTCBCCCTTCHHHHCCTTBTTCCCBCBBCEEEEE
T ss_pred cccccchHHHHHHHHHHHHHcCCCCeeeecchHhhhCcHHHHHHHhCCcccCCCCCCCCCCCCccCCCCCEeeEeEEEEE
Confidence 99999999999999999999999999999999998999999999999999988888889999999999999999999999
Q ss_pred EecchhHHHhcCC
Q 012221 295 VMESLEHAMKRGA 307 (468)
Q Consensus 295 vL~~~~~A~~~g~ 307 (468)
|||++++|++||+
T Consensus 237 vLe~~~~A~~rGA 249 (249)
T d1j3na1 237 VLEAYEHAKKRGA 249 (249)
T ss_dssp EEEEHHHHHHTTC
T ss_pred EEccHHHHHHCcC
Confidence 9999999999985
|
| >d1e5ma1 c.95.1.1 (A:6-255) Beta-ketoacyl-ACP synthase II {Synechocystis sp. [TaxId: 1143]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Beta-ketoacyl-ACP synthase II species: Synechocystis sp. [TaxId: 1143]
Probab=100.00 E-value=2.7e-49 Score=372.20 Aligned_cols=250 Identities=47% Similarity=0.846 Sum_probs=239.4
Q ss_pred CCcEEEEeeceeccCCCCHHHHHHHHHcCCCCccccCCCCCCCCCCccccccCCCCCCCCCCccccccCCHHHHHHHHHH
Q 012221 55 KKRVVITGMGLVSVFGNDVDAYYNKLLDGESGITMIDRFDASKFPTRFGGQIRGFSAEGYIDGKNDRRLDDCLRYCIVAG 134 (468)
Q Consensus 55 ~~~V~ItG~g~~~p~g~~~~~~~~~L~~G~~~i~~~~~~~~~~~~~~~~g~v~~~d~~~~i~~~~~~~~d~~~~l~l~a~ 134 (468)
++||||||||+++|+|.++++||++|++|+++|+++++|+...++..+.+.+++++..+.+++++.++||+++++++.++
T Consensus 1 ~~rVaItG~G~v~p~G~~~~~~w~~L~~G~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~d~~~~~~~~a~ 80 (250)
T d1e5ma1 1 KKRVVVTGLGAITPIGNTLQDYWQGLMEGRNGIGPITRFDASDQACRFGGEVKDFDATQFLDRKEAKRMDRFCHFAVCAS 80 (250)
T ss_dssp CCCEEEEEEEEEBTTBSSHHHHHHHHHTTCCCEEECCSSCCTTSSCCEEECCCSCCGGGTSCHHHHHTSCHHHHHHHHHH
T ss_pred CCeEEEECCeeECCCCCCHHHHHHHHHcCCCeeccCCccccccccccccceeeecccccccchhhhhhcCcHHHHHHHHH
Confidence 57999999999999999999999999999999999999999999999999999888888899999999999999999999
Q ss_pred HHHHHHcCCCCccccccccccceEEEeecCCCccchHHHHHHHHHhCCCCcCCcCcchhhhhhhHHHHhhhhCCCCccee
Q 012221 135 KKALEDADLGADISKKIDKERAGVLVGTGMGGLTVFSDGVQALIEKGHRKITPFFIPYAITNMGSALLAIDLGFMGPNYS 214 (468)
Q Consensus 135 ~~AL~dAgl~~~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~ia~~lgl~Gp~~~ 214 (468)
.+||++||+ ....+...+++|++|++.+....+......+..++....++..+...+.+.++.++++.||++||+++
T Consensus 81 ~~Al~~Agl---~~~~~~~~~~~v~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~is~~~gl~Gp~~t 157 (250)
T d1e5ma1 81 QQAINDAKL---VINELNADEIGVLIGTGIGGLKVLEDQQTILLDKGPSRCSPFMIPMMIANMASGLTAINLGAKGPNNC 157 (250)
T ss_dssp HHHHHHHTC---CCCTTTGGGEEEEEECSSCSHHHHHHHHHHHHHHCGGGSCTTHHHHHSTTHHHHHHHHHHTCCSCEEC
T ss_pred HHHHHHcCC---ChHhhcCCcceEEEEEeeccccchhhhhHHHhhcCccccCcccchhhhcchhhhhHHHhccCCCCCcc
Confidence 999999999 66677889999999999999988888888888898889999999999999999999999999999999
Q ss_pred ecccChHHHHHHHHHHHHHHhCCCCEEEEEeeccccchhhhhHhhhccccccCCCCCCCCCCCCCCCCCCeeecceeEEE
Q 012221 215 ISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWDKDRDGFVMGEGAGVL 294 (468)
Q Consensus 215 v~~acas~l~Al~~A~~~I~~G~~d~~lvgG~e~~~~p~~~~~~~~~~~l~~~~~~~~~~~rpfd~~~~G~v~gEGaaav 294 (468)
|+++|+||+.||++|+++|++|++|++||||+|..++|..+..|.+++.|+..+++|++.|||||+++||+++|||+++|
T Consensus 158 v~~ACsS~l~Ai~~A~~~i~~G~~d~~lvGg~~~~~~~~~~~~f~~~~~ls~~~~~p~~~~rPFD~~~dG~~~gEGa~~~ 237 (250)
T d1e5ma1 158 TVTACAAGSNAIGDAFRLVQNGYAKAMICGGTEAAITPLSYAGFASARALSFRNDDPLHASRPFDKDRDGFVMGEGSGIL 237 (250)
T ss_dssp CCCGGGHHHHHHHHHHHHHHTTSCSEEEEEEEECCCSHHHHHHHHHTTCBCCCTTCGGGTCCTTBTTCCSBCBBCEEEEE
T ss_pred ccccchhhhhhhHHHhhcccCCcccccccccchhhcCcHHHHHHHhcCCccCCCCCCCCccCCCCCCCCCEeeEeeEEEE
Confidence 99999999999999999999999999999999998999999999999999998888999999999999999999999999
Q ss_pred EecchhHHHhcCC
Q 012221 295 VMESLEHAMKRGA 307 (468)
Q Consensus 295 vL~~~~~A~~~g~ 307 (468)
|||++++|++||+
T Consensus 238 vLe~l~~A~~rGA 250 (250)
T d1e5ma1 238 ILEELESALARGA 250 (250)
T ss_dssp EEEEHHHHHHTTC
T ss_pred EEeeHHHHHHCcC
Confidence 9999999999985
|
| >d1tqya2 c.95.1.1 (A:219-423) Actinorhodin polyketide putative beta-ketoacyl synthase 1, KasA {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Actinorhodin polyketide putative beta-ketoacyl synthase 1, KasA species: Streptomyces coelicolor [TaxId: 1902]
Probab=100.00 E-value=1e-49 Score=361.16 Aligned_cols=199 Identities=37% Similarity=0.628 Sum_probs=191.0
Q ss_pred CCCCCCCCCCCCCCCCeeecceeEEEEecchhHHHhcCCceEEEEEEEEEcCCCCCCCCCCCChHHHHHHHHHHHHHcCC
Q 012221 269 DDPQTASRPWDKDRDGFVMGEGAGVLVMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAGV 348 (468)
Q Consensus 269 ~~~~~~~rpfd~~~~G~v~gEGaaavvL~~~~~A~~~g~~i~a~i~g~~~~~d~~~~~~~~~~~~~~~~~i~~al~~Agl 348 (468)
++|++.|||||.++|||++|||++++|||++++|+++|++||++|+|++.++|+.+.+.+.+++..+.++++++|+++++
T Consensus 1 ~~P~~~~rpFD~~adG~v~gEGa~~~vL~~~~~A~~~g~~i~a~i~g~~~~~dg~~~~~~~~~~~~~~~~~~~al~~a~i 80 (205)
T d1tqya2 1 DDPEHASRPFDGTRDGFVLAEGAAMFVLEDYDSALARGARIHAEISGYATRCNAYHMTGLKADGREMAETIRVALDESRT 80 (205)
T ss_dssp SCGGGCCCTTBTTCCCBCEECEEEEEEEEEHHHHHHTTCCCCEEEEEEEEEECSSCSSCCCTTCHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCCccCCCCCEeeEeeEEEEEEeEHHHHHHCCCceEEEEEeeEccccccccCcccccccccchhhhhHHhhhcC
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcCEEEEccCCCccCCHHHHHHHHHHhcc-CCCceeeecccccCccccchhHHHHHHHHHHHhcCCcCCCCCCCCCC
Q 012221 349 SPEEVNYINAHATSTLAGDLAEINAIKKVFKN-TTGIKINATKSMIGHCLGAAGGLEAIATVKAITTGWLHPSINQFNPE 427 (468)
Q Consensus 349 ~~~dId~v~~h~~gt~~~D~~E~~al~~~f~~-~~~~~v~s~k~~~Gh~~~AsG~~~l~~~~~~l~~~~~pp~~~~~~~~ 427 (468)
+|+||+|||+|||||+.+|.+|+++|+++|+. ..+++|+++|+++||+++|||++++++++++|++++|||++|+++++
T Consensus 81 ~~~~i~~ie~hgtGt~~~D~~E~~ai~~~~~~~~~~~~v~s~K~~~GH~~~AsG~~~li~~~~~l~~g~ipp~~~~~~~~ 160 (205)
T d1tqya2 81 DATDIDYINAHGSGTRQNDRHETAAYKRALGEHARRTPVSSIKSMVGHSLGAIGSLEIAACVLALEHGVVPPTANLRTSD 160 (205)
T ss_dssp CGGGCCEEECCCCCCHHHHHHHHHHHHHHTGGGGGGSCEECTHHHHCBCTTTHHHHHHHHHHHHHHHCEECCBTTCCSBB
T ss_pred CccceeeeeccccccccCchhHHHHHHHhhccccCCceeeeecccccccccccchhHHHHHHHHHhCCeEcccCCCCCCC
Confidence 99999999999999999999999999999986 34689999999999999999999999999999999999999999999
Q ss_pred CCCCcccccccccccCccEEEEEcccccCeeeEEEEeecC
Q 012221 428 PSVEFDTVANKKQQHEVNVAISNSFGFGGHNSVVAFSAFK 467 (468)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~l~~s~g~gG~n~~~vl~~~~ 467 (468)
|+++++.++.+.+.++.+++++|+|||||+|+|+||++++
T Consensus 161 p~~~~~~v~~~~~~~~~~~a~~~s~GfGG~na~~vl~~~~ 200 (205)
T d1tqya2 161 PECDLDYVPLEARERKLRSVLTVGSGFGGFQSAMVLRDAE 200 (205)
T ss_dssp TTBCSCCCBSSCEECCCSEEEEEEEETTTEEEEEEEECHH
T ss_pred CCCCcccCCCCCcCCCCCEEEEeCCCCCceeEEEEEeeCC
Confidence 9999999988888888999999999999999999999874
|
| >d1tqyb2 c.95.1.1 (B:210-403) Actinorhodin polyketide putative beta-ketoacyl synthase 2, KasB {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Actinorhodin polyketide putative beta-ketoacyl synthase 2, KasB species: Streptomyces coelicolor [TaxId: 1902]
Probab=100.00 E-value=3.2e-48 Score=347.74 Aligned_cols=193 Identities=27% Similarity=0.422 Sum_probs=179.9
Q ss_pred CCCCCCCCCCCCCCCeeecceeEEEEecchhHHHhcCC-ceEEEEEEEEEcCCCCCCCCCCCChHHHHHHHHHHHHHcCC
Q 012221 270 DPQTASRPWDKDRDGFVMGEGAGVLVMESLEHAMKRGA-PIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAGV 348 (468)
Q Consensus 270 ~~~~~~rpfd~~~~G~v~gEGaaavvL~~~~~A~~~g~-~i~a~i~g~~~~~d~~~~~~~~~~~~~~~~~i~~al~~Agl 348 (468)
+|+..|||||.+++||++|||++++|||++++|++||+ +||++|.|+++++|+.+.. +.+. +++++|+++|+++++
T Consensus 1 ~p~~~~rPFD~~a~G~~~gEGa~~~vLe~~~~A~~rg~~~i~a~i~g~~~~~d~~~~~-~~~~--g~~~~i~~aL~~a~i 77 (194)
T d1tqyb2 1 DPDRAYLPFDERAAGYVPGEGGAILVLEDSAAAEARGRHDAYGELAGCASTFDPAPGS-GRPA--GLERAIRLALNDAGT 77 (194)
T ss_dssp CGGGSCCTTSTTCCCBCBBCEEEEEEEEEHHHHHHHTCCCCSEEEEEEEEEECCCTTC-CCCC--SHHHHHHHHHHHHTC
T ss_pred CCCCCcCcccCCCCCEeeEeeEEEEEEeEHHHHHhcCCceeeeeeecccccccccccc-cchh--hhhhhhhhhcccccc
Confidence 47889999999999999999999999999999999997 6999999999999987643 3334 467899999999999
Q ss_pred CCCCcCEEEEccCCCccCCHHHHHHHHHHhccCCCceeeecccccCccccchhHHHHHHHHHHHhcCCcCCCCCCCCCCC
Q 012221 349 SPEEVNYINAHATSTLAGDLAEINAIKKVFKNTTGIKINATKSMIGHCLGAAGGLEAIATVKAITTGWLHPSINQFNPEP 428 (468)
Q Consensus 349 ~~~dId~v~~h~~gt~~~D~~E~~al~~~f~~~~~~~v~s~k~~~Gh~~~AsG~~~l~~~~~~l~~~~~pp~~~~~~~~~ 428 (468)
+|+||+|||+|||||+.+|.+|+++|.++|+. ..++|+++|+++||+++|||++++++++++|++++|||++|++++++
T Consensus 78 ~~~di~~v~ahgtGt~~~D~~E~~al~~~f~~-~~~~v~s~K~~~GH~~~AsG~~~li~~~~~l~~g~ipp~~~~~~~~~ 156 (194)
T d1tqyb2 78 GPEDVDVVFADGAGVPELDAAEARAIGRVFGR-EGVPVTVPKTTTGRLYSGGGPLDVVTALMSLREGVIAPTAGVTSVPR 156 (194)
T ss_dssp CGGGCCEEECCCCCSHHHHHHHHHHHHHHHCT-TCSEEECGGGGTCBCGGGHHHHHHHHHHHHHHHTSBCCBCSCCCCCG
T ss_pred cccceeeeeccccCcccccHHHhhhhhhhhhc-cccccccccccccccccccccceehhhhhhhhhceeccccCCCCCCc
Confidence 99999999999999999999999999999986 46899999999999999999999999999999999999999999999
Q ss_pred CCCcccccccccccCccEEEEEcccccCeeeEEEEeec
Q 012221 429 SVEFDTVANKKQQHEVNVAISNSFGFGGHNSVVAFSAF 466 (468)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~l~~s~g~gG~n~~~vl~~~ 466 (468)
+++++.++.+.+.++.+++++|+|||||+|+|+||++|
T Consensus 157 ~~~~~~v~~~~~~~~~~~a~v~s~GfgG~na~~vl~~~ 194 (194)
T d1tqyb2 157 EYGIDLVLGEPRSTAPRTALVLARGRWGFNSAAVLRRF 194 (194)
T ss_dssp GGCCEECBSSCBCCCCSEEEEEEEETTTEEEEEEEEEC
T ss_pred ccCccccCCCCccCCCCEEEEECcCCCceeEEEEEeeC
Confidence 99998888777778899999999999999999999997
|
| >d2vbaa1 c.95.1.1 (A:1-253) Beta-ketoacyl-ACP synthase I {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Beta-ketoacyl-ACP synthase I species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.1e-44 Score=341.09 Aligned_cols=251 Identities=37% Similarity=0.562 Sum_probs=216.8
Q ss_pred CCcEEEEeeceeccCCCCHHHHHHHHHcCCCCccccCCCCCCCCCCccccccCCCCCCCCCCccccccCCHHHHHHHHHH
Q 012221 55 KKRVVITGMGLVSVFGNDVDAYYNKLLDGESGITMIDRFDASKFPTRFGGQIRGFSAEGYIDGKNDRRLDDCLRYCIVAG 134 (468)
Q Consensus 55 ~~~V~ItG~g~~~p~g~~~~~~~~~L~~G~~~i~~~~~~~~~~~~~~~~g~v~~~d~~~~i~~~~~~~~d~~~~l~l~a~ 134 (468)
|+||||||||+++|+|.++++||++|++|+++|+++++|+...++....+.+..+ ...+++.+..+.+++..++.+.+.
T Consensus 1 m~RVvITG~G~i~p~G~~~~~~w~~L~~G~sgi~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 79 (253)
T d2vbaa1 1 MKRAVITGLGIVSSIGNNQQEVLASLREGRSGITFSQELKDSGMRSHVWGNVKLD-TTGLIDRKVVRFMSDASIYAFLSM 79 (253)
T ss_dssp CCCEEEEEEEEEBTTBSSHHHHHHHHHHTCCCEEECHHHHHTTCSCCEEECCCCC-CTTSSCHHHHTTCCHHHHHHHHHH
T ss_pred CCcEEEEccEEECCCCCCHHHHHHHHHcCCCccccCCccccccCccccccccccc-ccccccchhhccchhhhhhhhHHH
Confidence 5789999999999999999999999999999999999888777877777776544 444578888999999999999999
Q ss_pred HHHHHHcCCCCccccccccccceEEEeecCCCccchHHHHHHHH-HhCCCCcCCcCcchhhhhhhHHHHhhhhCCCCcce
Q 012221 135 KKALEDADLGADISKKIDKERAGVLVGTGMGGLTVFSDGVQALI-EKGHRKITPFFIPYAITNMGSALLAIDLGFMGPNY 213 (468)
Q Consensus 135 ~~AL~dAgl~~~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~n~~a~~ia~~lgl~Gp~~ 213 (468)
.+|++++++..+ ...+..++|+++|+..++..........+. .++.+.++|+.++..+.|.++++|++.||++||++
T Consensus 80 ~~a~~~~~l~~~--~~~~~~r~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~is~~~g~~Gp~~ 157 (253)
T d2vbaa1 80 EQAIADAGLSPE--AYQNNPRVGLIAGSGGGSPRFQVFGADAMRGPRGLKAVGPYVVTKAMASGVSACLATPFKIHGVNY 157 (253)
T ss_dssp HHHHHHHTCCHH--HHTTCTTEEEEEECSSCCHHHHHHHHHHHTSTTTHHHHCTTHHHHHSTTHHHHHHHTTTTCCSCEE
T ss_pred HHHHHHhhccch--hccCCCCEEEEeccccccccccccccccccccCCccccCchhhhccccccccceeccccCccccee
Confidence 999999999321 224567899999999888766555444332 23455778889999999999999999999999999
Q ss_pred eecccChHHHHHHHHHHHHHHhCCCCEEEEEeeccccchhhhhHhhhccccccC-CCCCCCCCCCCCCCCCCeeecceeE
Q 012221 214 SISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAIIPIGLGGFVACRALSQR-NDDPQTASRPWDKDRDGFVMGEGAG 292 (468)
Q Consensus 214 ~v~~acas~l~Al~~A~~~I~~G~~d~~lvgG~e~~~~p~~~~~~~~~~~l~~~-~~~~~~~~rpfd~~~~G~v~gEGaa 292 (468)
+|+++|+||+.||++|+++|++|++|++||||+|.. .+..+..|.+++.++.. +++|++.|||||.+++|+++|||++
T Consensus 158 ~i~taCaSsl~Ai~~A~~~i~~G~~d~alvgg~~~~-~~~~~~~~~~~~~ls~~~~~~P~~~~rPFD~~~~G~v~gEGa~ 236 (253)
T d2vbaa1 158 SISSACATSAHCIGNAVEQIQLGKQDIVFAGGGEEL-CWEMACEFDAMGALSTKYNDTPEKASRTYDAHRDGFVIAGGGG 236 (253)
T ss_dssp EEECGGGHHHHHHHHHHHHHHTTSCSEEEEEEEECC-CHHHHHHHHHTTCBCCSCTTSGGGSCCTTBTTCCSBCBBCEEE
T ss_pred eeeccchhHHHHHHHHHHhcchhccceeeecchhhh-hcchhhhHHHHHHHhcCCCCCCCCCCCCCCCCCCCEeeeeEEE
Confidence 999999999999999999999999999999999984 44456678888877754 6678999999999999999999999
Q ss_pred EEEecchhHHHhcCCce
Q 012221 293 VLVMESLEHAMKRGAPI 309 (468)
Q Consensus 293 avvL~~~~~A~~~g~~i 309 (468)
+||||++++|++||++|
T Consensus 237 ~lvLe~le~A~~rGa~I 253 (253)
T d2vbaa1 237 MVVVEELEHALARGAHI 253 (253)
T ss_dssp EEEEEEHHHHHHTTCCC
T ss_pred EEEEccHHHHHHccCcC
Confidence 99999999999999986
|
| >d2ix4a1 c.95.1.1 (A:31-300) Beta-ketoacyl-ACP synthase II {Thale cress (Arabidopsis thaliana), mitochondrial isoform [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Beta-ketoacyl-ACP synthase II species: Thale cress (Arabidopsis thaliana), mitochondrial isoform [TaxId: 3702]
Probab=100.00 E-value=4.4e-42 Score=326.22 Aligned_cols=252 Identities=40% Similarity=0.693 Sum_probs=210.8
Q ss_pred CcEEEEeeceeccCCCCHHHHHHHHHcCCCCccccCCCCCC--C------------CCCccccccCCCCCCCCCC---cc
Q 012221 56 KRVVITGMGLVSVFGNDVDAYYNKLLDGESGITMIDRFDAS--K------------FPTRFGGQIRGFSAEGYID---GK 118 (468)
Q Consensus 56 ~~V~ItG~g~~~p~g~~~~~~~~~L~~G~~~i~~~~~~~~~--~------------~~~~~~g~v~~~d~~~~i~---~~ 118 (468)
+||||||||+++|+|.++++||++|.+|+++|++++.++.. . .+.++.++++.+.....+. .+
T Consensus 1 rRVvITG~G~vsP~G~~~ee~w~~L~~G~s~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (270)
T d2ix4a1 1 RRVVVTGLGMVTPLGRGVETTWRRLIDGECGIRGLTLDDLKMKSFDEETKLYTFDQLSSKVAAFVPYGSNPGEFDEALWL 80 (270)
T ss_dssp CCEEEEEEEEEETTEESHHHHHHHHHTTCCCEEECCGGGGCCTTSCHHHHHHHHHTCSCCEEECCCBSSSTTSBCHHHHS
T ss_pred CeEEEECceeECCCcCCHHHHHHHHHcCCCeeccCChhhcccccccccccccccccccceeeeecccccCchhhhHHHhh
Confidence 58999999999999999999999999999999988654332 2 2345566665533322222 23
Q ss_pred ccccCCHHHHHHHHHHHHHHHHcCCCCccccccccccceEEEeecCCCccchHHHHHHHHHhCCCCcCCcCcchhhhhhh
Q 012221 119 NDRRLDDCLRYCIVAGKKALEDADLGADISKKIDKERAGVLVGTGMGGLTVFSDGVQALIEKGHRKITPFFIPYAITNMG 198 (468)
Q Consensus 119 ~~~~~d~~~~l~l~a~~~AL~dAgl~~~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~ 198 (468)
...+++.....++.+..+|++++++.. .......+.++.++...+.....................|+.+++.+.|.+
T Consensus 81 ~~~~~~~~~~~a~~a~~~A~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (270)
T d2ix4a1 81 NSKAVANFIGYAVCAADEALRDAEWLP--TEEEEKERTGVSIGGGIGSICDIVEAAQLICEKRLRRLSPFFIPKILVNMA 158 (270)
T ss_dssp CSTTCCHHHHHHHHHHHHHHHHTTCCC--CSHHHHHTEEEEEEESSCCHHHHHHHHHHHHTTCGGGCCTTHHHHHCTTHH
T ss_pred hhhhhhhhHHHHHHHHHHHHHHhhhcc--ccccccccceEEeeccccccccchhhcchhhhccccccCcccCcccccchh
Confidence 455678888889999999999998732 123334567777777776666666666666666778889999999999999
Q ss_pred HHHHhhhhCCCCcceeecccChHHHHHHHHHHHHHHhCCCCEEEEEeeccccchhhhhHhhhccccccC-CCCCCCCCCC
Q 012221 199 SALLAIDLGFMGPNYSISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAIIPIGLGGFVACRALSQR-NDDPQTASRP 277 (468)
Q Consensus 199 a~~ia~~lgl~Gp~~~v~~acas~l~Al~~A~~~I~~G~~d~~lvgG~e~~~~p~~~~~~~~~~~l~~~-~~~~~~~~rp 277 (468)
+++|++.||++||+++|+++|+|++.||++|+++|++|+||+|||||+|..++|..+..|..++.|+.. +++|++.|||
T Consensus 159 a~~is~~~~l~Gp~~~v~~aCaSsl~Ai~~A~~~l~~G~~d~aivgg~~~~~~p~~~~~~~~~~~ls~~~~~~p~~~~rP 238 (270)
T d2ix4a1 159 SGHVSMKYGFQGPNHAAVTACATGAHSIGDATRMIQFGDADVMVAGGTESSIDALSVAGFSRSRALSTKFNSSPQEASRP 238 (270)
T ss_dssp HHHHHHHHTCCSCEECBCCGGGHHHHHHHHHHHHHHHTSCSEEEEEEEECCCSHHHHHHHHHTTCBCCTTTTCGGGSCCT
T ss_pred HHHHHHHhCCCCCCcccccccchhhHHHHHHHHHHHcCCCCeeccccchhhhhhhhHHHHHhcccccCCCCCCCCCccCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999865 5678899999
Q ss_pred CCCCCCCeeecceeEEEEecchhHHHhcCCce
Q 012221 278 WDKDRDGFVMGEGAGVLVMESLEHAMKRGAPI 309 (468)
Q Consensus 278 fd~~~~G~v~gEGaaavvL~~~~~A~~~g~~i 309 (468)
||++++|+++|||++++|||++++|++||++|
T Consensus 239 FD~~a~G~v~gEGaa~~vLe~l~~A~~rG~~I 270 (270)
T d2ix4a1 239 FDCDRDGFVIGEGSGVIVLEEYEHAKRRGAKI 270 (270)
T ss_dssp TBTTCCSBCBBCEEEEEEEEEHHHHHHTTCCC
T ss_pred CCCCCCCEeeEeeEEEEEEeeHHHHHHccCCC
Confidence 99999999999999999999999999999986
|
| >d1ox0a2 c.95.1.1 (A:252-409) Beta-ketoacyl-ACP synthase II {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Beta-ketoacyl-ACP synthase II species: Streptococcus pneumoniae [TaxId: 1313]
Probab=100.00 E-value=2.9e-41 Score=291.92 Aligned_cols=158 Identities=42% Similarity=0.673 Sum_probs=153.1
Q ss_pred ceEEEEEEEEEcCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCcCEEEEccCCCccCCHHHHHHHHHHhccCCCceee
Q 012221 308 PIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAGVSPEEVNYINAHATSTLAGDLAEINAIKKVFKNTTGIKIN 387 (468)
Q Consensus 308 ~i~a~i~g~~~~~d~~~~~~~~~~~~~~~~~i~~al~~Agl~~~dId~v~~h~~gt~~~D~~E~~al~~~f~~~~~~~v~ 387 (468)
+||++|+|++.++|+++++.|+|++.++.++|+++|+++++.|+||||||+|||||+.+|..|..+|+++|++ .++|+
T Consensus 1 tIyaei~G~~~~~Dg~~~~~p~p~g~~~~~~~~~al~~a~l~p~~i~~v~aHgtgT~~~D~~E~~ai~~~fg~--~~~v~ 78 (158)
T d1ox0a2 1 TILAEVVGYGNTCDAYHMTSPHPEGQGAIKAIKLALEEAEISPEQVAYVNAHGTSTPANEKGESGAIVAVLGK--EVPVS 78 (158)
T ss_dssp CCCEEEEEEEEEECCSCSSSCCTTCHHHHHHHHHHHHHHTCCGGGCCCEECCCCSCHHHHHHHHHHHHHHHCS--SSEEE
T ss_pred CEEEEEEEEEEcCCCCCCcCCCCCHHHHHHHHHHhhccccccceeeeEEeeeccccccchhHHHHHHHHhcCC--cccCc
Confidence 5899999999999999999999999999999999999999999999999999999999999999999999986 68999
Q ss_pred ecccccCccccchhHHHHHHHHHHHhcCCcCCCCCCCCCCCCCCcccccccccccCccEEEEEcccccCeeeEEEEeecC
Q 012221 388 ATKSMIGHCLGAAGGLEAIATVKAITTGWLHPSINQFNPEPSVEFDTVANKKQQHEVNVAISNSFGFGGHNSVVAFSAFK 467 (468)
Q Consensus 388 s~k~~~Gh~~~AsG~~~l~~~~~~l~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~g~gG~n~~~vl~~~~ 467 (468)
+.|+++||+++|||++++++++++|+++++||++|+++++|+++++.++.+.+.++.+++++|||||||+|+|+||+||+
T Consensus 79 s~Ks~iGH~~~asG~~~l~~~l~~l~~g~iPp~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~nsfGfGG~Na~lvl~~~~ 158 (158)
T d1ox0a2 79 STKSFTGHLLGAAGAVEAIVTIEAMRHNFVPMTAGTSEVSDYIEANVVYGQGLEKEIPYAISNTFGFGGHNAVLAFKRWE 158 (158)
T ss_dssp CTHHHHCBCGGGHHHHHHHHHHHHHHHTEECCBSSCCSBCTTCCSEECBSSCEECCCSEEEEEEEETTTEEEEEEEECCC
T ss_pred CcccccccchhhhhhhhhcccccccccceeccccCCCCCCcccCcccccCccccCCCCEEEEeCcCCCcEeEEEEEEecC
Confidence 99999999999999999999999999999999999999999999999888888888999999999999999999999985
|
| >d1e5ma2 c.95.1.1 (A:256-416) Beta-ketoacyl-ACP synthase II {Synechocystis sp. [TaxId: 1143]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Beta-ketoacyl-ACP synthase II species: Synechocystis sp. [TaxId: 1143]
Probab=100.00 E-value=3.3e-41 Score=292.73 Aligned_cols=160 Identities=48% Similarity=0.779 Sum_probs=153.9
Q ss_pred ceEEEEEEEEEcCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCcCEEEEccCCCccCCHHHHHHHHHHhcc-CCCcee
Q 012221 308 PIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAGVSPEEVNYINAHATSTLAGDLAEINAIKKVFKN-TTGIKI 386 (468)
Q Consensus 308 ~i~a~i~g~~~~~d~~~~~~~~~~~~~~~~~i~~al~~Agl~~~dId~v~~h~~gt~~~D~~E~~al~~~f~~-~~~~~v 386 (468)
+||++|+|+++++|+++.+.|.|++.++.++|++||++|+++|+||+|||+|||||+.+|.+|..+|+++|++ ..+++|
T Consensus 1 rIya~i~G~~~~~Dg~~~~~~~p~g~~~~~~i~~Al~~a~i~~~~i~~v~~HgtGT~~~D~~E~~al~~vf~~~~~~~~v 80 (161)
T d1e5ma2 1 KIYGEMVGYAMTCDAYHITAPVPDGRGATRAIAWALKDSGLKPEMVSYINAHGTSTPANDVTETRAIKQALGNHAYNIAV 80 (161)
T ss_dssp CCCEEEEEEEEEECCSCSSSCCTTCHHHHHHHHHHHHHHTCCGGGCCEEECCCCSCHHHHHHHHHHHHHHHGGGGGGSEE
T ss_pred CEEEEEeeEEEeCCCCCCCCCCcCHHHHHHHHHHHHHHcCCChhhcceEEEeccCCcccchHHhhhhhhccccCCCcceE
Confidence 5899999999999999999999999999999999999999999999999999999999999999999999986 346899
Q ss_pred eecccccCccccchhHHHHHHHHHHHhcCCcCCCCCCCCCCCCCCcccccccccccCccEEEEEcccccCeeeEEEEeec
Q 012221 387 NATKSMIGHCLGAAGGLEAIATVKAITTGWLHPSINQFNPEPSVEFDTVANKKQQHEVNVAISNSFGFGGHNSVVAFSAF 466 (468)
Q Consensus 387 ~s~k~~~Gh~~~AsG~~~l~~~~~~l~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~g~gG~n~~~vl~~~ 466 (468)
++.|+++||+++|||++++++++++|++++|||++|+++|+|.+++..++.+.+.++.+++++|||||||+|+|+||++|
T Consensus 81 ~s~K~~~GH~~~AsG~~~l~~~l~~~~~g~ipp~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~nsfGfGG~Na~lvl~~y 160 (161)
T d1e5ma2 81 SSTKSMTGHLLGGSGGIEAVATVMAIAEDKVPPTINLENPDPECDLDYVPGQSRALIVDVALSNSFGFGGHNVTLAFKKY 160 (161)
T ss_dssp ECTHHHHCBCGGGHHHHHHHHHHHHHHHTEECCBTTCSSBCTTCCSCCCBSSCEECCCSEEEEEEEETTTEEEEEEEECC
T ss_pred EecccccccccccchhhHHHHhHHhcccCeeCCccCCCCCCCCCCcccCcCcccCCCCCEEEEeCcCcCcEeEEEEEeee
Confidence 99999999999999999999999999999999999999999999998888888888899999999999999999999998
Q ss_pred C
Q 012221 467 K 467 (468)
Q Consensus 467 ~ 467 (468)
+
T Consensus 161 ~ 161 (161)
T d1e5ma2 161 Q 161 (161)
T ss_dssp C
T ss_pred C
Confidence 5
|
| >d1tqyb1 c.95.1.1 (B:2-209) Actinorhodin polyketide putative beta-ketoacyl synthase 2, KasB {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Actinorhodin polyketide putative beta-ketoacyl synthase 2, KasB species: Streptomyces coelicolor [TaxId: 1902]
Probab=100.00 E-value=2.4e-39 Score=295.21 Aligned_cols=205 Identities=27% Similarity=0.442 Sum_probs=197.4
Q ss_pred EEEEeeceeccCCCCHHHHHHHHHcCCCCccccCCCCCCCCCCccccccCCCCCCCCCCccccccCCHHHHHHHHHHHHH
Q 012221 58 VVITGMGLVSVFGNDVDAYYNKLLDGESGITMIDRFDASKFPTRFGGQIRGFSAEGYIDGKNDRRLDDCLRYCIVAGKKA 137 (468)
Q Consensus 58 V~ItG~g~~~p~g~~~~~~~~~L~~G~~~i~~~~~~~~~~~~~~~~g~v~~~d~~~~i~~~~~~~~d~~~~l~l~a~~~A 137 (468)
|||||||+++|+|.++++||++|++|+++++++++|+...++..+.+++++|++..++++++.+.|||+++|++.++++|
T Consensus 2 VvITG~G~vsp~g~~~~~~w~~L~~G~sgi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~A 81 (208)
T d1tqyb1 2 VLITGVGVVAPNGLGLAPYWSAVLDGRHGLGPVTRFDVSRYPATLAGQIDDFHAPDHIPGRLLPQTDPSTRLALTAADWA 81 (208)
T ss_dssp EEEEEEEEEETTEESHHHHHHHHHTTCCCEEECTTTTGGGSSCCEEECCCSCCHHHHSCTTTGGGCCHHHHHHHHHHHHH
T ss_pred EEEEcceeECCCcCCHHHHHHHHHcCCCceecCcccCchhcccccccccccccccccCChhHhhcccccccccccccccc
Confidence 99999999999999999999999999999999999999999999999999999888899999999999999999999999
Q ss_pred HHHcCCCCccccccccccceEEEeecCCCccchHHHHHHHHHhCCCCcCCcCcchhhhhhhHHHHhhhhCCCCcceeecc
Q 012221 138 LEDADLGADISKKIDKERAGVLVGTGMGGLTVFSDGVQALIEKGHRKITPFFIPYAITNMGSALLAIDLGFMGPNYSIST 217 (468)
Q Consensus 138 L~dAgl~~~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~ia~~lgl~Gp~~~v~~ 217 (468)
|+|||+ ++.+++..++|+++|++.++....++.++.+.....+.+.|+.++..+.|+.+++|++.||++||+++|++
T Consensus 82 l~~Ag~---~~~~~~~~~~g~~~g~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~ia~~~gl~Gp~~tv~t 158 (208)
T d1tqyb1 82 LQDAKA---DPESLTDYDMGVVTANACGGFDFTHREFRKLWSEGPKSVSVYESFAWFYAVNTGQISIRHGMRGPSSALVA 158 (208)
T ss_dssp HHHTTC---CGGGSCGGGEEEEEECSSCSHHHHHHHHHHHHHTCGGGSCTTHHHHSSTTHHHHHHHHHHTCCSSCEEEEC
T ss_pred chhhhc---ccccccccccccccccccccccccchhhhhhccccccccccccccccccccccchhhhcccccceeeeccc
Confidence 999999 66778889999999999999999999999999999899999999999999999999999999999999999
Q ss_pred cChHHHHHHHHHHHHHHhCCCCEEEEEeeccccchhhhhHhhhcccccc
Q 012221 218 ACATSNYCFYAAANHIRRGEADLMLAGGTEAAIIPIGLGGFVACRALSQ 266 (468)
Q Consensus 218 acas~l~Al~~A~~~I~~G~~d~~lvgG~e~~~~p~~~~~~~~~~~l~~ 266 (468)
+|+|++.||++|+++|++| +|+|||||+|..++|+.+.+|.+++.|+.
T Consensus 159 ACaS~l~Ai~~A~~~I~~G-~d~~lvGG~d~~l~p~~~~~f~~~~~lSt 206 (208)
T d1tqyb1 159 EQAGGLDALGHARRTIRRG-TPLVVSGGVDSALDPWGWVSQIASGRIST 206 (208)
T ss_dssp GGGHHHHHHHHHHHHHHHT-CSEEEEEEEECCCSHHHHHHHHTTSCBCC
T ss_pred cccHHHHHHHHHHHHHHcC-CCEEEECccccccCHHHHHHHHHcCCCCC
Confidence 9999999999999999999 99999999999999999999999999985
|
| >d2gfva2 c.95.1.1 (A:252-412) Beta-ketoacyl-ACP synthase II {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Beta-ketoacyl-ACP synthase II species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2.9e-39 Score=280.80 Aligned_cols=159 Identities=39% Similarity=0.665 Sum_probs=148.2
Q ss_pred ceEEEEEEEEEcCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCcCEEEEccCCCccCCHHHHHHHHHHhcc-CCCcee
Q 012221 308 PIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAGVSPEEVNYINAHATSTLAGDLAEINAIKKVFKN-TTGIKI 386 (468)
Q Consensus 308 ~i~a~i~g~~~~~d~~~~~~~~~~~~~~~~~i~~al~~Agl~~~dId~v~~h~~gt~~~D~~E~~al~~~f~~-~~~~~v 386 (468)
+||++|+|+++++|+.+.+.|+|++.++.++|+++|++++++|+||+|||+|||||+.+|.+|..+|+++|++ ..+++|
T Consensus 1 rIya~I~G~~~~~Dg~~~~~~~p~g~~~~~~~~~al~~a~i~p~~i~~ie~HgtGT~~gD~~E~~Al~~~f~~~~~~~~i 80 (161)
T d2gfva2 1 KIYAELVGFGMSSDAYHMTSPPENGAGAALAMANALRDAGIEASQIGYVNAHGTSTPAGDKAEAQAVKTIFGEAASRVLV 80 (161)
T ss_dssp CCCEEEEEEEEEECCSCSSSCCTTCHHHHHHHHHHHHHHTCCGGGCCEEECCCCSCHHHHHHHHHHHHHHHGGGGTTSEE
T ss_pred CEEEEEeeEEEeCCCCCCCCCCCCHHHHHHHHHHhHhhcccCcceEEEEEeecccCcccHHHHHHHHHHHhcccccccee
Confidence 5899999999999999999999999999999999999999999999999999999999999999999999987 356899
Q ss_pred eecccccCccccchhHHHHHHHHHHHhcCCcCCCCCCCCCCCCCCccccccccc-ccCccEEEEEcccccCeeeEEEEee
Q 012221 387 NATKSMIGHCLGAAGGLEAIATVKAITTGWLHPSINQFNPEPSVEFDTVANKKQ-QHEVNVAISNSFGFGGHNSVVAFSA 465 (468)
Q Consensus 387 ~s~k~~~Gh~~~AsG~~~l~~~~~~l~~~~~pp~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~s~g~gG~n~~~vl~~ 465 (468)
++.|+++||+++|||++++++++++|++++|||++|+.+|++.+.+.......+ ..+.+++++|||||||+|+|+||++
T Consensus 81 ~s~Ks~~GH~~~AsG~~~li~~ll~l~~~~ipp~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~vnsfGfgG~Na~lil~~ 160 (161)
T d2gfva2 81 SSTKSMTGHLLGAAGAVESIYSILALRDQAVPPTINLDNPDEGCDLDFVPHEARQVSGMEYTLCNSFGFGGTNGSLIFKK 160 (161)
T ss_dssp ECTHHHHCBCGGGHHHHHHHHHHHHHHSCEECCBTTCSSBCTTCCSBCCBSSCEECSSCCEEEEEEEEGGGEEEEEEEEC
T ss_pred ccccccccccHHHHHHHHHHHHHHHhcCCEecccccccccccccccccccccCccCCCCcEEEEeCcCccceeEEEEEEE
Confidence 999999999999999999999999999999999999999999988776555543 3457999999999999999999997
Q ss_pred c
Q 012221 466 F 466 (468)
Q Consensus 466 ~ 466 (468)
.
T Consensus 161 ~ 161 (161)
T d2gfva2 161 I 161 (161)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >d1j3na2 c.95.1.1 (A:250-408) Beta-ketoacyl-ACP synthase II {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Beta-ketoacyl-ACP synthase II species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=3.8e-39 Score=279.33 Aligned_cols=158 Identities=48% Similarity=0.778 Sum_probs=149.1
Q ss_pred ceEEEEEEEEEcCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCcCEEEEccCCCccCCHHHHHHHHHHhcc-CCCcee
Q 012221 308 PIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAGVSPEEVNYINAHATSTLAGDLAEINAIKKVFKN-TTGIKI 386 (468)
Q Consensus 308 ~i~a~i~g~~~~~d~~~~~~~~~~~~~~~~~i~~al~~Agl~~~dId~v~~h~~gt~~~D~~E~~al~~~f~~-~~~~~v 386 (468)
+||++|+|+++++|+.+.+.|+|++.++.++++++|+++|++|+||||||+|||||+.+|.+|+.+|+++|+. ..+++|
T Consensus 1 rIya~I~G~~~~~Dg~~~~~~~p~g~~~~~~~~~al~~agi~p~~I~~ie~HgtGT~~gD~~E~~Al~~~f~~~~~~~~i 80 (159)
T d1j3na2 1 RIYAELVGFGRSADAHHITEPHPEGKGAALAMARALKDAGIAPEQVGYINAHGTSTPVGDRAEVLAIKRVFGDHAKRLMV 80 (159)
T ss_dssp CCCEEEEEEEEEECCSCSSCCCTTCHHHHHHHHHHHHHHTCCGGGCCEEECCCCSCHHHHHHHHHHHHHHHHHHHTTCEE
T ss_pred CEEEEEeEEEEeCCCCCCCCCCcCHHHHHHHhhccHhhcCCCHHHcCeEeccccCCccchHHHHHHHHHHHHhcCCCceE
Confidence 5899999999999999999999999999999999999999999999999999999999999999999999976 346899
Q ss_pred eecccccCccccchhHHHHHHHHHHHhcCCcCCCCCCCCCCCCCCcccccccccccCccEEEEEcccccCeeeEEEEeec
Q 012221 387 NATKSMIGHCLGAAGGLEAIATVKAITTGWLHPSINQFNPEPSVEFDTVANKKQQHEVNVAISNSFGFGGHNSVVAFSAF 466 (468)
Q Consensus 387 ~s~k~~~Gh~~~AsG~~~l~~~~~~l~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~g~gG~n~~~vl~~~ 466 (468)
++.|+++||+++|||++++++++++|++++|||++|++++++++++..+++. +..+.+++++|||||||+|+|+||+|.
T Consensus 81 ~s~K~~~GH~~~asG~~~li~~~~~l~~~~ipp~~~~~~~~~~~~~~~~~~~-~~~~~~~a~v~sfGfgG~Na~~vl~kv 159 (159)
T d1j3na2 81 SSTKSMIGHLLGAAGAVEAIATVQALYHGVIPPTINLEDPDPELDLDFVPEP-REAKVDYALSNSFAFGGHNAVLAFKRV 159 (159)
T ss_dssp ECTHHHHCBCGGGHHHHHHHHHHHHHHHTEECCCTTTTSBCTTSCSBCCSSC-EECCCSEEEEEEECTTSEEEEEEEECC
T ss_pred ecccccccccccccccchhhhhhhHhhCCEeccccccccccceeeeeccCcc-cCCCCCEEEEeCCCCCceeEEEEEEEC
Confidence 9999999999999999999999999999999999999999999998877654 456789999999999999999999974
|
| >d2ix4a2 c.95.1.1 (A:301-461) Beta-ketoacyl-ACP synthase II {Thale cress (Arabidopsis thaliana), mitochondrial isoform [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Beta-ketoacyl-ACP synthase II species: Thale cress (Arabidopsis thaliana), mitochondrial isoform [TaxId: 3702]
Probab=100.00 E-value=5.4e-39 Score=278.89 Aligned_cols=157 Identities=39% Similarity=0.606 Sum_probs=147.0
Q ss_pred EEEEEEEEEcCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCcCEEEEccCCCccCCHHHHHHHHHHhcc---CCCcee
Q 012221 310 IAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAGVSPEEVNYINAHATSTLAGDLAEINAIKKVFKN---TTGIKI 386 (468)
Q Consensus 310 ~a~i~g~~~~~d~~~~~~~~~~~~~~~~~i~~al~~Agl~~~dId~v~~h~~gt~~~D~~E~~al~~~f~~---~~~~~v 386 (468)
|++|+|+++++|+++++.|+++++++.++|+++|++++++|+||+|||+|||||+.+|.+|+.+++++|+. ..+++|
T Consensus 1 Y~~i~G~~~~~Dg~~~t~p~~~g~~~~~~~~~al~~a~~~~~di~yveaHGtGT~~gD~~E~~al~~~~~~~~~~~~~~i 80 (161)
T d2ix4a2 1 YAELCGYGMSGDAHHITQPPEDGKGAVLAMTRALRQSGLCPNQIDYVNAHATSTPIGDAVEARAIKTVFSEHATSGTLAF 80 (161)
T ss_dssp CEEEEEEEEEECCSCSSCCCTTCHHHHHHHHHHHHHHTCCGGGCCEEECCCCSCHHHHHHHHHHHHHHHTHHHHTSCSEE
T ss_pred CeEEEEEEEcCCCCCCcCCChhHHHHHHHHHHHHHhcCCCccccCEEEEeccCCCCCcHHHHhhhHhhhcccccccceee
Confidence 79999999999999999999999999999999999999999999999999999999999999999999986 356899
Q ss_pred eecccccCccccchhHHHHHHHHHHHhcCCcCCCCCCCCCCCCCCcccccc-cccccCccEEEEEcccccCeeeEEEEee
Q 012221 387 NATKSMIGHCLGAAGGLEAIATVKAITTGWLHPSINQFNPEPSVEFDTVAN-KKQQHEVNVAISNSFGFGGHNSVVAFSA 465 (468)
Q Consensus 387 ~s~k~~~Gh~~~AsG~~~l~~~~~~l~~~~~pp~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~s~g~gG~n~~~vl~~ 465 (468)
++.|+++||+++|||++++++++++|+++++||++|+++|+|.++...++. ..++...|++++|||||||+|+|+||++
T Consensus 81 ~s~K~~~GH~~~AsG~~~li~~~l~l~~~~ipp~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~nsfGfgG~Na~lvl~~ 160 (161)
T d2ix4a2 81 SSTKGATGHLLGAAGAVEAIFSILAIHHGVAPMTLNVKNPDPIFDKRFMPLTTSKKMLVRTAMSNSFGFGGTNASLLFAS 160 (161)
T ss_dssp ECTHHHHCBCGGGHHHHHHHHHHHHHHHTEECCCTTCSSBCTTCCSSSCCCSSCEECCCSEEEEEEEETTTEEEEEEEEC
T ss_pred eccccccCCccchHHHHHHHHHHHHHhcCCCCCccCCCCCCcccCcccCccccCCCCCcCEEEEeCCcccceeEEEEEEe
Confidence 999999999999999999999999999999999999999999998777653 3445678999999999999999999997
Q ss_pred c
Q 012221 466 F 466 (468)
Q Consensus 466 ~ 466 (468)
.
T Consensus 161 ~ 161 (161)
T d2ix4a2 161 I 161 (161)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >d1tqya1 c.95.1.1 (A:3-218) Actinorhodin polyketide putative beta-ketoacyl synthase 1, KasA {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Actinorhodin polyketide putative beta-ketoacyl synthase 1, KasA species: Streptomyces coelicolor [TaxId: 1902]
Probab=100.00 E-value=2e-37 Score=284.14 Aligned_cols=209 Identities=25% Similarity=0.398 Sum_probs=187.7
Q ss_pred CcEEEEeeceeccCCCCHHHHHHHHHcCCCCccccCCCCCCCCCCccccccCCCCCCCCCCccccccCCHHHHHHHHHHH
Q 012221 56 KRVVITGMGLVSVFGNDVDAYYNKLLDGESGITMIDRFDASKFPTRFGGQIRGFSAEGYIDGKNDRRLDDCLRYCIVAGK 135 (468)
Q Consensus 56 ~~V~ItG~g~~~p~g~~~~~~~~~L~~G~~~i~~~~~~~~~~~~~~~~g~v~~~d~~~~i~~~~~~~~d~~~~l~l~a~~ 135 (468)
|||||||||+++|+|.++++||++|++|+++|+++++|+...+...+...++.+...+.+++++.+.|++.++|++.+++
T Consensus 1 rRVvItG~G~v~p~G~~~~~~w~~L~~G~s~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~aa~ 80 (216)
T d1tqya1 1 RRVVITGVGVRAPGGNGTRQFWELLTSGRTATRRISFFDPSPYRSQVAAEADFDPVAEGFGPRELDRMDRASQFAVACAR 80 (216)
T ss_dssp CCEEEEEEEEEETTEESHHHHHHHHHHTCCCEEECCSSCCTTSSCCEEECCCCCHHHHTCCHHHHHHSCHHHHHHHHHHH
T ss_pred CeEEEEeceeECCCCCCHHHHHHHHHcCCCEeecCCccCCCcccccccccccccccccccChhhhcccCcchhhHHHHHH
Confidence 68999999999999999999999999999999999999887776666655554444456899999999999999999999
Q ss_pred HHHHHcCCCCccccccccccceEEEeecCCCccchHHHHHHHHHhCC------CCcCCcCcchhhhhhhHHHHhhhhCCC
Q 012221 136 KALEDADLGADISKKIDKERAGVLVGTGMGGLTVFSDGVQALIEKGH------RKITPFFIPYAITNMGSALLAIDLGFM 209 (468)
Q Consensus 136 ~AL~dAgl~~~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~n~~a~~ia~~lgl~ 209 (468)
+||+|||+ ++.+++..+++++++++.++.......+..+...+. ..+.++.++..+.|.++.++++.||++
T Consensus 81 ~Al~dAg~---~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~~g~~ 157 (216)
T d1tqya1 81 EAFAASGL---DPDTLDPARVGVSLGSAVAAATSLEREYLLLSDSGRDWEVDAAWLSRHMFDYLVPSVMPAEVAWAVGAE 157 (216)
T ss_dssp HHHHHHTC---CTTTCCGGGEEEEEECSSTTHHHHHHHHHHHHTTTTCSSCCGGGCCTTTHHHHSTTHHHHHHHHHHTCC
T ss_pred HHHHHhcC---CccccccccccccccccccccchhhHHHhhhhhcccccccchhhcccccccccCchHHHHHHHHhcCcc
Confidence 99999999 666778889999999999999888888887776543 345667778888999999999999999
Q ss_pred CcceeecccChHHHHHHHHHHHHHHhCCCCEEEEEeeccccchhhhhHhhhccccccC
Q 012221 210 GPNYSISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAIIPIGLGGFVACRALSQR 267 (468)
Q Consensus 210 Gp~~~v~~acas~l~Al~~A~~~I~~G~~d~~lvgG~e~~~~p~~~~~~~~~~~l~~~ 267 (468)
||+++++++|+|++.||.+|+++|++|++|+|||||+|..++|..+.+|.+++.|+.+
T Consensus 158 Gp~~tv~~ACaS~~~Ai~~A~~~i~~G~~d~~ivGG~d~~l~p~~~~~F~~~~alS~~ 215 (216)
T d1tqya1 158 GPVTMVSTGCTSGLDSVGNAVRAIEEGSADVMFAGAADTPITPIVVACFDAIRATTAR 215 (216)
T ss_dssp SCEEEECCGGGHHHHHHHHHHHHHHHTSCSEEEEEEEECCCSHHHHHHHHHTTCBCCC
T ss_pred ccceeeccccchHHHHHHHHHHHHHcCCCCEEEEeeeccccCHHHHHHHHHCCCCCcC
Confidence 9999999999999999999999999999999999999999999999999999999964
|
| >d2vbaa2 c.95.1.1 (A:254-404) Beta-ketoacyl-ACP synthase I {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Beta-ketoacyl-ACP synthase I species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.2e-36 Score=260.52 Aligned_cols=151 Identities=34% Similarity=0.582 Sum_probs=138.9
Q ss_pred EEEEEEEEEcCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCcCEEEEccCCCccCCHHHHHHHHHHhccCCCceeeec
Q 012221 310 IAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAGVSPEEVNYINAHATSTLAGDLAEINAIKKVFKNTTGIKINAT 389 (468)
Q Consensus 310 ~a~i~g~~~~~d~~~~~~~~~~~~~~~~~i~~al~~Agl~~~dId~v~~h~~gt~~~D~~E~~al~~~f~~~~~~~v~s~ 389 (468)
|++|+|++.++|+++++.| ++.++.++|+++|+++ ++||||||+|||||+++|.+|+.||+++|++ ..++|++.
T Consensus 1 Yaei~G~g~~~Dg~~~taP--~~~~~~~~~~~al~~a---~~~I~~v~aHgtGT~~gD~~E~~Al~~vfg~-~~~~v~s~ 74 (151)
T d2vbaa2 1 YAEIVGYGATSDGADMVAP--SGEGAVRCMKMAMHGV---DTPIDYLNSHGTSTPVGDVKELAAIREVFGD-KSPAISAT 74 (151)
T ss_dssp CEEEEEEEEEECCSCTTSC--CSHHHHHHHHHHHTTC---CSCCCEEECCCCSCHHHHHHHHHHHHHHHTT-CCCEEECT
T ss_pred CEEEEEEEEecCCCCCCCc--CHHHHHHHHHHhhhcC---cccceeEEEeccCCccccHHHHHHHHHHhCC-CCcccccc
Confidence 7999999999999988876 5677899999999876 6799999999999999999999999999987 46889999
Q ss_pred ccccCccccchhHHHHHHHHHHHhcCCcCCCCCCCCCCCCCCcccccccccccCccEEEEEcccccCeeeEEEEeec
Q 012221 390 KSMIGHCLGAAGGLEAIATVKAITTGWLHPSINQFNPEPSVEFDTVANKKQQHEVNVAISNSFGFGGHNSVVAFSAF 466 (468)
Q Consensus 390 k~~~Gh~~~AsG~~~l~~~~~~l~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~g~gG~n~~~vl~~~ 466 (468)
|+++||+++|||++++++++++|+++++||++|++++++++....++.+...++.+++++|||||||+|+|+||+|.
T Consensus 75 K~~~GH~~~asG~~~l~~~~~~l~~~~ipp~~~~~~~~~~~~~~~v~~~~~~~~~~~a~~nsfGfGG~Na~~vl~~v 151 (151)
T d2vbaa2 75 KAMTGHSLGAAGVQEAIYSLLMLEHGFIAPSINIEELDEQAAGLNIVTETTDRELTTVMSNSFGFGGTNATLVMRKL 151 (151)
T ss_dssp HHHHCBCGGGHHHHHHHHHHHHHHHTEECCCCCCSSBCTTCTTSEECCSCEECCCCEEEEEEEETTTEEEEEEEECC
T ss_pred hhhccccccchhhhhhhHHHHHHHcCCcccccCccccccccccccccCcCcCCCCCEEEEeCCcccceeEEEEEEEC
Confidence 99999999999999999999999999999999999999988766666666778889999999999999999999974
|
| >d1teda_ c.95.1.2 (A:) Polyketide synthase PKS18 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Chalcone synthase-like domain: Polyketide synthase PKS18 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.59 E-value=1e-14 Score=142.73 Aligned_cols=325 Identities=14% Similarity=0.113 Sum_probs=182.1
Q ss_pred CcEEEEeeceeccCC-CCHHHHHHHHHcCCCCc---cccCC-CCCCCCCCccccccCCCCCC----CCCCccccccC---
Q 012221 56 KRVVITGMGLVSVFG-NDVDAYYNKLLDGESGI---TMIDR-FDASKFPTRFGGQIRGFSAE----GYIDGKNDRRL--- 123 (468)
Q Consensus 56 ~~V~ItG~g~~~p~g-~~~~~~~~~L~~G~~~i---~~~~~-~~~~~~~~~~~g~v~~~d~~----~~i~~~~~~~~--- 123 (468)
...+|+|+|...|.- .+.+|+++.+..-.... ..+.+ +...+...|+... ++.+.. ....+...+++
T Consensus 10 ~~a~I~g~g~~~P~~~v~n~e~~~~~~~~~~~~~~~~~~~ri~~~tGI~~R~~~~-~~~~~~~~~~~~~~~~~~~r~~~~ 88 (372)
T d1teda_ 10 TVAVIEGLATGTPRRVVNQSDAADRVAELFLDPGQRERIPRVYQKSRITTRRMAV-DPLDAKFDVFRREPATIRDRMHLF 88 (372)
T ss_dssp CEEEEEEEEEECCSCEEEHHHHHHHHHTC----CCTTHHHHHHHTSCCSEEECSS-CTTSTTHHHHTTCSSCHHHHHHHH
T ss_pred ceEEEEEEEEeCCCeEEcHHHHHHHHHhhcCChHHHHHHHHHHHccCCcccceec-cccccchhhhhhcCCCHHHHHHHH
Confidence 357899999999987 67788888775321110 00100 1112333322110 111110 00111111121
Q ss_pred -CHHHHHHHHHHHHHHHHcCCCCccccccccccceEEEeecCCCccchHHHHHHHHHhCCCCcCCcCcchhhhhhhHHHH
Q 012221 124 -DDCLRYCIVAGKKALEDADLGADISKKIDKERAGVLVGTGMGGLTVFSDGVQALIEKGHRKITPFFIPYAITNMGSALL 202 (468)
Q Consensus 124 -d~~~~l~l~a~~~AL~dAgl~~~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~i 202 (468)
.....|+.+|+++||+++|+ +++++| -++++++. ++ .. ...+.+|
T Consensus 89 ~e~~~~la~~Aa~~aL~~ag~---~~~dId----~lI~~t~t-~~---------------------~~-----P~~a~~v 134 (372)
T d1teda_ 89 YEHAVPLAVDVSKRALAGLPY---RAAEIG----LLVLATST-GF---------------------IA-----PGVDVAI 134 (372)
T ss_dssp HHHHHHHHHHHHHHHHTTCCC---CGGGEE----EEEEEESS-CC---------------------CS-----SCHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHcCC---CHHHCC----EEEEeccC-CC---------------------CC-----chHHHHH
Confidence 23557999999999999999 556665 35555532 11 11 1347789
Q ss_pred hhhhCCCCcc--eeec-ccChHHHHHHHHHHHHHHhCCCCEEEEEeeccccchhhhhHhhhccccccCCCCCCCCCCCCC
Q 012221 203 AIDLGFMGPN--YSIS-TACATSNYCFYAAANHIRRGEADLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWD 279 (468)
Q Consensus 203 a~~lgl~Gp~--~~v~-~acas~l~Al~~A~~~I~~G~~d~~lvgG~e~~~~p~~~~~~~~~~~l~~~~~~~~~~~rpfd 279 (468)
...||++... +.+. .+|++++.||..|..+|++|..+.+||+++|.+.... .. .+ . ++
T Consensus 135 ~~~LGl~~~~~~~~~~~~gC~g~~~aL~~A~~~l~sg~~~~~LVV~~E~~s~~~-----------~~-~d------~-~~ 195 (372)
T d1teda_ 135 VKELGLSPSISRVVVNFMGCAAAMNALGTATNYVRAHPAMKALVVCIELCSVNA-----------VF-AD------D-IN 195 (372)
T ss_dssp HHHHTCCTTCEEEEEESCGGGHHHHHHHHHHHHHHHSTTCEEEEEEEEECGGGC-----------CC-CS------S-HH
T ss_pred HhhhccCCceeEeeccccCccHHHHHHHHHHHHHhcCCCccceeeeehhhcccc-----------cC-CC------c-ch
Confidence 9999997643 3343 5899999999999999999999999999999521110 00 00 0 00
Q ss_pred CCCCCeeecceeEEEEecchhHHHhcCCceEEEEEEEEEc-CCCC-C----------CC-CCCC-----ChHHHHHHHHH
Q 012221 280 KDRDGFVMGEGAGVLVMESLEHAMKRGAPIIAEYLGGAVN-CDAY-H----------MT-DPRA-----DGLGVSSCIES 341 (468)
Q Consensus 280 ~~~~G~v~gEGaaavvL~~~~~A~~~g~~i~a~i~g~~~~-~d~~-~----------~~-~~~~-----~~~~~~~~i~~ 341 (468)
.....+++||||+|+||++.+...... .....+.+.... .... . .. .... ....+..++++
T Consensus 196 ~~~~~~lfGDGAaA~ll~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 274 (372)
T d1teda_ 196 DVVIHSLFGDGCAALVIGASQVQEKLE-PGKVVVRSSFSQLLDNTEDGIVLGVNHNGITCELSENLPGYIFSGVAPVVTE 274 (372)
T ss_dssp HHHHHHHBCEEEEEEEEEEECTTSCCC-TTCEEEEEEEEEECTTCTTSEEEEEETTEEEEEECTTHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhcccceeEEeccCCcccccC-CceeEEecccccccCCCccccccCCCCCcceeechHHHHHHHHHHHHHHHHH
Confidence 011234789999999998754322111 112333333221 1100 0 00 0001 13456778999
Q ss_pred HHHHcCCCCCCcCEEEEccCCCccCCHHHHHHHHHHhccC-CCcee-eecccccCccccchhHHHHHHHHHHHhcCCcCC
Q 012221 342 SLEDAGVSPEEVNYINAHATSTLAGDLAEINAIKKVFKNT-TGIKI-NATKSMIGHCLGAAGGLEAIATVKAITTGWLHP 419 (468)
Q Consensus 342 al~~Agl~~~dId~v~~h~~gt~~~D~~E~~al~~~f~~~-~~~~v-~s~k~~~Gh~~~AsG~~~l~~~~~~l~~~~~pp 419 (468)
+|+++|++++|||++..|..+....| .+.+.++-. +.+.. ...-..+||+.+||=.+. .-..++++.+.
T Consensus 275 ~L~~~gl~~~did~~i~Hq~~~~i~~-----~i~~~Lgl~~ek~~~s~~~l~~~GN~~sasip~~---L~~~l~~g~~~- 345 (372)
T d1teda_ 275 MLWDNGLQISDIDLWAIHPGGPKIIE-----QSVRSLGISAELAAQSWDVLARFGNMLSVSLIFV---LETMVQQAESA- 345 (372)
T ss_dssp HHHHTTCCGGGCSCEEECCSCHHHHH-----HHHHHHTCCGGGGHHHHHHHHHHCBCTHHHHHHH---HHHHHHSCSSS-
T ss_pred HHHhcCCCHHHhhhhhccCccHHHHH-----HHHHHcCCCHHHhhhhHHHHhccCCcHHHHHHHH---HHHHHHhCCCC-
Confidence 99999999999999999987765433 344444431 12211 112244699876553322 22344554321
Q ss_pred CCCCCCCCCCCCcccccccccccCccEEEEEcccccCeeeEEEEeec
Q 012221 420 SINQFNPEPSVEFDTVANKKQQHEVNVAISNSFGFGGHNSVVAFSAF 466 (468)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~g~gG~n~~~vl~~~ 466 (468)
...+.++..+||.|=+-..++|+..
T Consensus 346 ----------------------~g~d~vll~~fG~G~s~~~~ll~~~ 370 (372)
T d1teda_ 346 ----------------------KAISTGVAFAFGPGVTVEGMLFDII 370 (372)
T ss_dssp ----------------------SSSEEEEEEEEETTTEEEEEEEEEC
T ss_pred ----------------------CCCCEEEEEEEcHHHhHHHHhheee
Confidence 1224666779998767778888764
|
| >d1m3ka1 c.95.1.1 (A:1-268) Biosynthetic thiolase {Zoogloea ramigera [TaxId: 350]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Biosynthetic thiolase species: Zoogloea ramigera [TaxId: 350]
Probab=99.43 E-value=1.1e-12 Score=121.30 Aligned_cols=91 Identities=15% Similarity=0.229 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHHHHHcCCCCccccccccccceEEEeecCCCccchHHHHHHHHHhCCCCcCCcCcchhhhhhhHHHHhhh
Q 012221 126 CLRYCIVAGKKALEDADLGADISKKIDKERAGVLVGTGMGGLTVFSDGVQALIEKGHRKITPFFIPYAITNMGSALLAID 205 (468)
Q Consensus 126 ~~~l~l~a~~~AL~dAgl~~~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~ia~~ 205 (468)
...|+..+++++|+++|+ +++++| .|++|+....... ..++.+++..
T Consensus 27 ~~dL~~~~~~~~l~~~~i---~~~~Id----~vi~G~~~~~~~~--------------------------~n~ar~~al~ 73 (268)
T d1m3ka1 27 AHELGATVISAVLERAGV---AAGEVN----EVILGQVLPAGEG--------------------------QNPARQAAMK 73 (268)
T ss_dssp HHHHHHHHHHHHHHHHTC---CGGGCC----EEEEECSCCTTSC--------------------------SCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCC---CHHHCc----EEEEeeccccCcc--------------------------hHHHhHHHHH
Confidence 357899999999999999 677787 6899976421111 1135556666
Q ss_pred hCCC--CcceeecccChHHHHHHHHHHHHHHhCCCCEEEEEeeccc
Q 012221 206 LGFM--GPNYSISTACATSNYCFYAAANHIRRGEADLMLAGGTEAA 249 (468)
Q Consensus 206 lgl~--Gp~~~v~~acas~l~Al~~A~~~I~~G~~d~~lvgG~e~~ 249 (468)
.|+. -|.++|+..|+||+.||.+|++.|++|++|++|+||+|++
T Consensus 74 aglp~~vpa~tv~~~C~Sg~~Ai~~Aa~~I~~G~~dvvlagG~Esm 119 (268)
T d1m3ka1 74 AGVPQEATAWGMNQLAGSGLRAVALGMQQIATGDASIIVAGGMESM 119 (268)
T ss_dssp TTCCTTSEEEEEECGGGHHHHHHHHHHHHHHTTSCSCEEEEEEEES
T ss_pred hCCcccccceeecccCcccchHHHHHHHHHhCCCceEEeecccccc
Confidence 7774 3889999999999999999999999999999999999984
|
| >d1ulqa1 c.95.1.1 (A:3-275) Beta-ketoadipyl CoA thiolase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Beta-ketoadipyl CoA thiolase species: Thermus thermophilus [TaxId: 274]
Probab=99.37 E-value=4.9e-12 Score=117.43 Aligned_cols=91 Identities=14% Similarity=0.159 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHHHHHcCCCCccccccccccceEEEeecCCCccchHHHHHHHHHhCCCCcCCcCcchhhhhhhHHHHhhh
Q 012221 126 CLRYCIVAGKKALEDADLGADISKKIDKERAGVLVGTGMGGLTVFSDGVQALIEKGHRKITPFFIPYAITNMGSALLAID 205 (468)
Q Consensus 126 ~~~l~l~a~~~AL~dAgl~~~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~ia~~ 205 (468)
...|+..+++++|+++|+ +++++| .|++|+....... ...++..++..
T Consensus 24 ~~dL~~~a~~~al~~~~i---~~~~Id----~vi~G~v~~~g~~-------------------------~~n~aR~~al~ 71 (273)
T d1ulqa1 24 PDDLLAHALSVLVDRSGV---PKEEVE----DVYAGCANQAGED-------------------------NRNVARMALLL 71 (273)
T ss_dssp HHHHHHHHHHHHHHHHTC---CGGGCC----EEEEECSCCSSTT-------------------------TTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCC---CHHHCC----EEEEEeccccccc-------------------------cccHHHHHHHH
Confidence 356889999999999999 677787 6999975432110 11235556666
Q ss_pred hCCC--CcceeecccChHHHHHHHHHHHHHHhCCCCEEEEEeecc
Q 012221 206 LGFM--GPNYSISTACATSNYCFYAAANHIRRGEADLMLAGGTEA 248 (468)
Q Consensus 206 lgl~--Gp~~~v~~acas~l~Al~~A~~~I~~G~~d~~lvgG~e~ 248 (468)
.|+. -|.++|+..|+||+.||.+|++.|++|+.|++|+||+|+
T Consensus 72 aGlp~~vp~~tVn~~CaSg~~Ai~~a~~~I~~G~~d~~lagG~Es 116 (273)
T d1ulqa1 72 AGFPVEVAGCTVNRLCGSGLEAVAQAARAIWAGEGKVYIGSGVES 116 (273)
T ss_dssp TTCCTTCEEEEEECGGGHHHHHHHHHHHHHHTTSCSEEEEEEEEE
T ss_pred cCCCCccceEEEecccchHHHHHHHHHHHHhcCCCccceeeeccc
Confidence 6773 388999999999999999999999999999999999997
|
| >d1wdkc1 c.95.1.1 (C:2-263) Fatty oxidation complex beta subunit (3-ketoacyl-CoA thiolase) {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Fatty oxidation complex beta subunit (3-ketoacyl-CoA thiolase) species: Pseudomonas fragi [TaxId: 296]
Probab=99.37 E-value=4.9e-12 Score=116.32 Aligned_cols=91 Identities=19% Similarity=0.204 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHHHHH-cCCCCccccccccccceEEEeecCCCccchHHHHHHHHHhCCCCcCCcCcchhhhhhhHHHHhh
Q 012221 126 CLRYCIVAGKKALED-ADLGADISKKIDKERAGVLVGTGMGGLTVFSDGVQALIEKGHRKITPFFIPYAITNMGSALLAI 204 (468)
Q Consensus 126 ~~~l~l~a~~~AL~d-Agl~~~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~ia~ 204 (468)
...|+..+++++|++ +|+ +++++| .|++|+....... ...++..++.
T Consensus 30 ~~dL~~~~i~~~l~r~agi---~~~~Id----~vi~G~v~~~~~~-------------------------g~n~aR~~al 77 (262)
T d1wdkc1 30 AEDMSAHLISKVLERNSKV---DPGEVE----DVIWGCVNQTLEQ-------------------------GWNIARMASL 77 (262)
T ss_dssp HHHHHHHHHHHHHHHCTTS---CGGGEE----EEEEECSSBSBTT-------------------------TTTHHHHHHT
T ss_pred HHHHHHHHHHHHHHhcCCC---CHHHee----EEEEEeecccccc-------------------------cccchhhhHh
Confidence 357888999999995 899 667777 6888875432110 0112555566
Q ss_pred hhCCC--CcceeecccChHHHHHHHHHHHHHHhCCCCEEEEEeecc
Q 012221 205 DLGFM--GPNYSISTACATSNYCFYAAANHIRRGEADLMLAGGTEA 248 (468)
Q Consensus 205 ~lgl~--Gp~~~v~~acas~l~Al~~A~~~I~~G~~d~~lvgG~e~ 248 (468)
..|+. -|.++|+..|+||+.||..|++.|++|++|++|+||+|+
T Consensus 78 ~ag~p~~vp~~tV~~~C~Sgl~Ai~~aa~~I~sG~~dvvlAgGvEs 123 (262)
T d1wdkc1 78 MTQIPHTSAAQTVSRLCGSSMSALHTAAQAIMTGNGDVFVVGGVEH 123 (262)
T ss_dssp TSSSCTTSEEEEEECGGGHHHHHHHHHHHHHHTTSCSEEEEEEEEE
T ss_pred hhhcccccchhhccccccHHHHHHHHHHHHHHhhcCCceeeecccc
Confidence 56653 389999999999999999999999999999999999997
|
| >d1afwa2 c.95.1.1 (A:294-417) Thiolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Thiolase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.36 E-value=8.3e-13 Score=105.26 Aligned_cols=121 Identities=13% Similarity=0.237 Sum_probs=96.6
Q ss_pred CCceEEEEEEEEEcCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCcCEEEEccCCCccCCHHHHHHHHHHhcc-CCCc
Q 012221 306 GAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAGVSPEEVNYINAHATSTLAGDLAEINAIKKVFKN-TTGI 384 (468)
Q Consensus 306 g~~i~a~i~g~~~~~d~~~~~~~~~~~~~~~~~i~~al~~Agl~~~dId~v~~h~~gt~~~D~~E~~al~~~f~~-~~~~ 384 (468)
|.+++|+|.+++... ..|...+.+...+++++|+++|++.+|||+||.|..+.. -..+..+.++- .+++
T Consensus 2 gl~plAri~~~a~~g-----~~P~~m~~gPv~Ai~klL~r~gl~~~Did~~EinEAFA~-----q~l~~~~~l~id~~kv 71 (124)
T d1afwa2 2 NLPVLGRYIDFQTVG-----VPPEIMGVGPAYAIPKVLEATGLQVQDIDIFEINEAFAA-----QALYCIHKLGIDLNKV 71 (124)
T ss_dssp TCCCCEEEEEEEEEE-----CCGGGGGGHHHHHHHHHHHHHTCCGGGCSEEEECCSBHH-----HHHHHHHHHTCCGGGB
T ss_pred CCcEEEEEEEEEEEe-----cCHHHhhhChHHHHHHHHHHcCCCcccCcEEEeccchhH-----HHHHHHHHcCCChhhc
Confidence 678999999999876 456667778899999999999999999999999966653 22333444443 4578
Q ss_pred eeeecccccCccccchhHHHHHHHHHHHhcCCcCCCCCCCCCCCCCCcccccccccccCccEEEEEcccccCeeeEEEEe
Q 012221 385 KINATKSMIGHCLGAAGGLEAIATVKAITTGWLHPSINQFNPEPSVEFDTVANKKQQHEVNVAISNSFGFGGHNSVVAFS 464 (468)
Q Consensus 385 ~v~s~k~~~Gh~~~AsG~~~l~~~~~~l~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~g~gG~n~~~vl~ 464 (468)
++++..-.+|||.||||.+.++.++.+|+++ ++++++...-||...++|++
T Consensus 72 N~~GGaiAlGHP~GaSGarlv~~l~~~L~~~-----------------------------~~glas~C~ggG~G~a~~ie 122 (124)
T d1afwa2 72 NPRGGAIALGHPLGCTGARQVATILRELKKD-----------------------------QIGVVSMCIGTGMGAAAIFI 122 (124)
T ss_dssp STTCCHHHHCBCTTTHHHHHHHHHHHHSCTT-----------------------------CEEEEEEEETTTEEEEEEEE
T ss_pred cccCccceecCCcCCchHHHHHHHHHHhccC-----------------------------CEEEEEEcccCCcEEEEEEE
Confidence 9999999999999999999999999999653 24566665667888888887
Q ss_pred e
Q 012221 465 A 465 (468)
Q Consensus 465 ~ 465 (468)
+
T Consensus 123 r 123 (124)
T d1afwa2 123 K 123 (124)
T ss_dssp E
T ss_pred e
Confidence 6
|
| >d1afwa1 c.95.1.1 (A:25-293) Thiolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Thiolase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.31 E-value=2.6e-11 Score=111.74 Aligned_cols=90 Identities=17% Similarity=0.124 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHHHHHc----CCCCccccccccccceEEEeecCCCccchHHHHHHHHHhCCCCcCCcCcchhhhhhhHHH
Q 012221 126 CLRYCIVAGKKALEDA----DLGADISKKIDKERAGVLVGTGMGGLTVFSDGVQALIEKGHRKITPFFIPYAITNMGSAL 201 (468)
Q Consensus 126 ~~~l~l~a~~~AL~dA----gl~~~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~ 201 (468)
...|+..+++++|+++ |+ +++++| .|++|+...... ...++..
T Consensus 35 ~~~L~~~~i~~~l~r~~~~~~i---dp~~Id----~vi~G~v~~~g~--------------------------~~~~aR~ 81 (269)
T d1afwa1 35 TDYLLYNFLNEFIGRFPEPLRA---DLNLIE----EVACGNVLNVGA--------------------------GATEHRA 81 (269)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHT---CGGGCC----CEEEECSSSBGG--------------------------GHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCccccC---ChhhcC----EEEecccccccc--------------------------ccccchh
Confidence 3567788888898754 57 556666 588887532111 1123556
Q ss_pred HhhhhCC--CCcceeecccChHHHHHHHHHHHHHHhCCCCEEEEEeecc
Q 012221 202 LAIDLGF--MGPNYSISTACATSNYCFYAAANHIRRGEADLMLAGGTEA 248 (468)
Q Consensus 202 ia~~lgl--~Gp~~~v~~acas~l~Al~~A~~~I~~G~~d~~lvgG~e~ 248 (468)
++..-|+ .-|.++|+..|+||+.||..|++.|++|+.|++|+||+|+
T Consensus 82 ~al~aglp~~vpa~tVnr~CaSg~~Ai~~Aa~~I~~G~~divlagG~Es 130 (269)
T d1afwa1 82 ACLASGIPYSTPFVALNRQCSSGLTAVNDIANKIKVGQIDIGLALGVES 130 (269)
T ss_dssp HHHHTTCCTTSCEEEEECGGGHHHHHHHHHHHHHHTTSCSEEEEEEEEE
T ss_pred hhhhccccccccchhccccchHHHHHHHHHHHHHhhccccceeeeeccc
Confidence 6666676 4599999999999999999999999999999999999998
|
| >d1ulqa2 c.95.1.1 (A:276-400) Beta-ketoadipyl CoA thiolase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Beta-ketoadipyl CoA thiolase species: Thermus thermophilus [TaxId: 274]
Probab=99.28 E-value=6e-12 Score=100.20 Aligned_cols=122 Identities=20% Similarity=0.249 Sum_probs=95.4
Q ss_pred ceEEEEEEEEEcCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCcCEEEEccCCCccCCHHHHHHHHHHhc---cCCCc
Q 012221 308 PIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAGVSPEEVNYINAHATSTLAGDLAEINAIKKVFK---NTTGI 384 (468)
Q Consensus 308 ~i~a~i~g~~~~~d~~~~~~~~~~~~~~~~~i~~al~~Agl~~~dId~v~~h~~gt~~~D~~E~~al~~~f~---~~~~~ 384 (468)
||+|+|.+++... ..|...+.+...+++++|+++|++++|||++|.|-.+.. ...+..+.++ +.+.+
T Consensus 1 KPlA~i~~~~~~g-----~~P~~~~~~P~~A~~~~L~r~gl~~~Did~~EinEAFAa-----q~l~~~~~~~l~~d~~kv 70 (125)
T d1ulqa2 1 RPLARVRAIAVAG-----VPPRIMGIGPVPATRKALERAGLSFSDLGLIELNEAFAA-----QALAVLREWSLSMEDQRL 70 (125)
T ss_dssp CCSEEEEEEEEEE-----CCGGGGGGTHHHHHHHHHHHTTCCGGGCSEEEECCSBHH-----HHHHHHHHHTCCTTCTTB
T ss_pred CCeEEEEEEEEEe-----cCHHHHhhccHHHHHhHhhccCcCccccchheeccccch-----hHHHHHHHhhccCchhhc
Confidence 4679999998876 455556667789999999999999999999999855442 2222233322 24578
Q ss_pred eeeecccccCccccchhHHHHHHHHHHHhcCCcCCCCCCCCCCCCCCcccccccccccCccEEEEEcccccCeeeEEEEe
Q 012221 385 KINATKSMIGHCLGAAGGLEAIATVKAITTGWLHPSINQFNPEPSVEFDTVANKKQQHEVNVAISNSFGFGGHNSVVAFS 464 (468)
Q Consensus 385 ~v~s~k~~~Gh~~~AsG~~~l~~~~~~l~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~g~gG~n~~~vl~ 464 (468)
++++..-.+|||+||||.+.++.++.+|+++ +.++++++.-.-||...++++|
T Consensus 71 N~~GGaIAlGHP~GASGari~~tl~~~L~~~---------------------------~~~~G~as~C~gGG~g~A~~iE 123 (125)
T d1ulqa2 71 NPNGGAIALGHPLGASGARILTTLVHEMRRR---------------------------KVQFGLATMCIGVGQGIAVVVE 123 (125)
T ss_dssp STTCCHHHHCCCHHHHHHHHHHHHHHHHHHT---------------------------TCSEEEEEEEETTTEEEEEEEE
T ss_pred CCCCCcccccCCccccchhHHHHHHHHHHhc---------------------------CCCEEEEEecccccceeEEEEE
Confidence 9999999999999999999999999999874 2356777777778899999998
Q ss_pred ec
Q 012221 465 AF 466 (468)
Q Consensus 465 ~~ 466 (468)
+.
T Consensus 124 ~i 125 (125)
T d1ulqa2 124 GM 125 (125)
T ss_dssp EC
T ss_pred eC
Confidence 73
|
| >d1wdkc2 c.95.1.1 (C:264-391) Fatty oxidation complex beta subunit (3-ketoacyl-CoA thiolase) {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Fatty oxidation complex beta subunit (3-ketoacyl-CoA thiolase) species: Pseudomonas fragi [TaxId: 296]
Probab=99.28 E-value=2.4e-12 Score=103.12 Aligned_cols=124 Identities=17% Similarity=0.233 Sum_probs=96.5
Q ss_pred CCceEEEEEEEEEcCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCcCEEEEccCCCccCCHHHHHHHHHHhcc----C
Q 012221 306 GAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAGVSPEEVNYINAHATSTLAGDLAEINAIKKVFKN----T 381 (468)
Q Consensus 306 g~~i~a~i~g~~~~~d~~~~~~~~~~~~~~~~~i~~al~~Agl~~~dId~v~~h~~gt~~~D~~E~~al~~~f~~----~ 381 (468)
|.+++++|++++... ..|...+.+...+++++|++++++.+|||++|.|-.+.. ...+..+.++. .
T Consensus 1 Gl~pla~i~~~~~~g-----~dP~~mg~~p~~A~~klL~ragl~~~did~~EinEAFA~-----q~l~~~~~~~~~~~~~ 70 (128)
T d1wdkc2 1 GLEPLAVIRSMAVAG-----VDPAIMGYGPVPATQKALKRAGLNMADIDFIELNEAFAA-----QALPVLKDLKVLDKMN 70 (128)
T ss_dssp TCCCSEEEEEEEEEE-----CCGGGGGGTHHHHHHHHHHHHTCCGGGCCEEEECCSBHH-----HHHHHHHHTTCGGGHH
T ss_pred CCCEEEEEEEEEEEe-----cCHHHhccCcHHHHHHHhhhcCccccccceEEeecccch-----hhhhhhhhcccccCCc
Confidence 567899999999876 456666777889999999999999999999999855431 12222222221 2
Q ss_pred CCceeeecccccCccccchhHHHHHHHHHHHhcCCcCCCCCCCCCCCCCCcccccccccccCccEEEEEcccccCeeeEE
Q 012221 382 TGIKINATKSMIGHCLGAAGGLEAIATVKAITTGWLHPSINQFNPEPSVEFDTVANKKQQHEVNVAISNSFGFGGHNSVV 461 (468)
Q Consensus 382 ~~~~v~s~k~~~Gh~~~AsG~~~l~~~~~~l~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~g~gG~n~~~ 461 (468)
+++++++..-.+|||+||||.+.++.++.+|+++ +.++++++.-.-||...++
T Consensus 71 ekvN~~GGaiAlGHP~GASGaRlv~~l~~~L~~~---------------------------~~~~Glas~C~gGG~g~A~ 123 (128)
T d1wdkc2 71 EKVNLHGGAIALGHPFGCSGARISGTLLNVMKQN---------------------------GGTFGLSTMCIGLGQGIAT 123 (128)
T ss_dssp HHBSTTCCHHHHCCCHHHHHHHHHHHHHHHHHHT---------------------------TCSEEEEEEEETTTEEEEE
T ss_pred ceecCCCCcccccccccccchhHHHHHHHHHHhc---------------------------CCCEEEEEecccccceeEE
Confidence 4688999999999999999999999999999874 1356777777778899999
Q ss_pred EEeec
Q 012221 462 AFSAF 466 (468)
Q Consensus 462 vl~~~ 466 (468)
++++.
T Consensus 124 ~iErv 128 (128)
T d1wdkc2 124 VFERV 128 (128)
T ss_dssp EEECC
T ss_pred EEEeC
Confidence 99863
|
| >d1m3ka2 c.95.1.1 (A:269-392) Biosynthetic thiolase {Zoogloea ramigera [TaxId: 350]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Biosynthetic thiolase species: Zoogloea ramigera [TaxId: 350]
Probab=99.26 E-value=7.1e-12 Score=99.66 Aligned_cols=122 Identities=17% Similarity=0.217 Sum_probs=98.1
Q ss_pred ceEEEEEEEEEcCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCcCEEEEccCCCccCCHHHHHHHHHHhcc-CCCcee
Q 012221 308 PIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAGVSPEEVNYINAHATSTLAGDLAEINAIKKVFKN-TTGIKI 386 (468)
Q Consensus 308 ~i~a~i~g~~~~~d~~~~~~~~~~~~~~~~~i~~al~~Agl~~~dId~v~~h~~gt~~~D~~E~~al~~~f~~-~~~~~v 386 (468)
+|+++|.+++... ..|...+.+...+++++|+++|++.+|||+||.|-.+.. -..+..+.++- .+.+++
T Consensus 2 ~Plari~~~a~~g-----~dP~~mg~~Pv~A~~~lL~r~gl~~~Did~~EinEAFA~-----q~la~~~~l~id~~kvN~ 71 (124)
T d1m3ka2 2 QPLGRIVSWATVG-----VDPKVMGTGPIPASRKALERAGWKIGDLDLVEANEAFAA-----QACAVNKDLGWDPSIVNV 71 (124)
T ss_dssp CCSEEEEEEEEEE-----CCGGGGGGTHHHHHHHHHHHHTCCGGGCSEEEECCSBHH-----HHHHHHHHHCCCGGGBST
T ss_pred CcEEEEEEEEEEe-----cChHHhccchHHHHHHHHHHcCCChhcccHHHhcccchh-----heeeehHhhCCChhhcCC
Confidence 5789999998876 456666778889999999999999999999999966543 23344444543 457899
Q ss_pred eecccccCccccchhHHHHHHHHHHHhcCCcCCCCCCCCCCCCCCcccccccccccCccEEEEEcccccCeeeEEEEeec
Q 012221 387 NATKSMIGHCLGAAGGLEAIATVKAITTGWLHPSINQFNPEPSVEFDTVANKKQQHEVNVAISNSFGFGGHNSVVAFSAF 466 (468)
Q Consensus 387 ~s~k~~~Gh~~~AsG~~~l~~~~~~l~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~g~gG~n~~~vl~~~ 466 (468)
++..-.+|||+||||.+.++.++.+|+++ +.++++++.-.-||...++++++.
T Consensus 72 ~GGaiAlGHP~GaSGarl~~tl~~~L~~~---------------------------~~~~Glas~C~gGG~g~A~liE~v 124 (124)
T d1m3ka2 72 NGGAIAIGHPIGASGARILNTLLFEMKRR---------------------------GARKGLATLCIGGGMGVAMCIESL 124 (124)
T ss_dssp TCCHHHHCCCTTTHHHHHHHHHHHHHHHH---------------------------TCSEEEEEEEETTTEEEEEEEECC
T ss_pred CCCccccccCcCccchhHHHHHHHHHHhc---------------------------CCCEEEEEecccccceeEEEEEeC
Confidence 99999999999999999999999999873 235777777777889999999863
|
| >d1mzja1 c.95.1.2 (A:3-183) Priming beta-ketosynthase from the r1128 polyketide biosynthetic pathway {Streptomyces sp. r1128 [TaxId: 140437]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Chalcone synthase-like domain: Priming beta-ketosynthase from the r1128 polyketide biosynthetic pathway species: Streptomyces sp. r1128 [TaxId: 140437]
Probab=99.24 E-value=3.9e-11 Score=104.21 Aligned_cols=119 Identities=26% Similarity=0.316 Sum_probs=88.7
Q ss_pred HHHHHHHHHHHHHHHcCCCCccccccccccceEEEeecCCCccchHHHHHHHHHhCCCCcCCcCcchhhhhhhHHHHhhh
Q 012221 126 CLRYCIVAGKKALEDADLGADISKKIDKERAGVLVGTGMGGLTVFSDGVQALIEKGHRKITPFFIPYAITNMGSALLAID 205 (468)
Q Consensus 126 ~~~l~l~a~~~AL~dAgl~~~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~ia~~ 205 (468)
...|+.+|+++||+++|+ +++++| .+++++..+... ....+..+...
T Consensus 58 ~~~ma~~Aa~~aL~~a~~---~~~dId----~li~~s~~~~~~--------------------------~p~~a~~v~~~ 104 (181)
T d1mzja1 58 IQVMGVAASRRALEHAGV---DPAEID----LVVVSTMTNFVH--------------------------TPPLSVAIAHE 104 (181)
T ss_dssp HHHHHHHHHHHHHHHHTC---CGGGCC----EEEEECSCCCCC--------------------------SSCHHHHHHHH
T ss_pred HHHHhHHHHHhhhhhccC---ChhHCe----EEEEeccCCccc--------------------------cccHHHHHHHh
Confidence 578999999999999999 556666 466665432111 11235667777
Q ss_pred hCCCC-cceeecccChHHHHHHHHHHHHHHhCCCCEEEEEeeccccchhhhhHhhhccccccCCCCCCCCCCCCCCCCCC
Q 012221 206 LGFMG-PNYSISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWDKDRDG 284 (468)
Q Consensus 206 lgl~G-p~~~v~~acas~l~Al~~A~~~I~~G~~d~~lvgG~e~~~~p~~~~~~~~~~~l~~~~~~~~~~~rpfd~~~~G 284 (468)
++.+. .++.++.+|++++.||..|..+|++|.++.+|+.++|.. ++. +. ++.....
T Consensus 105 l~~~~~~~~Dv~~~C~g~~~aL~~A~~~i~~~~~~~~LvV~~e~~-s~~----------~~------------~~d~~~~ 161 (181)
T d1mzja1 105 LGADNAGGFDLSAACAGFCHALSIAADAVESGGSRHVLVVATERM-TDV----------ID------------LADRSLS 161 (181)
T ss_dssp HTCTTCEEEEEECGGGHHHHHHHHHHHHHHHSSCSCEEEEEEEEG-GGG----------SC------------SSCTTTT
T ss_pred hcCCCccceeHHhhhccHHHHHHHHhCHhhcCCCceeEEeeeccc-ccc----------CC------------CCCcceE
Confidence 88854 788999999999999999999999999999999999962 211 11 1222345
Q ss_pred eeecceeEEEEecchh
Q 012221 285 FVMGEGAGVLVMESLE 300 (468)
Q Consensus 285 ~v~gEGaaavvL~~~~ 300 (468)
+++||||+|+||++.+
T Consensus 162 ~lfGDGAaA~ll~~~~ 177 (181)
T d1mzja1 162 FLFGDGAGAAVVGPSD 177 (181)
T ss_dssp TTBCEEEEEEEEEEES
T ss_pred EEeeeeeEEEEEEeCC
Confidence 6899999999998643
|
| >d1ub7a1 c.95.1.2 (A:2-173) Ketoacyl-ACP synthase III (FabH) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Chalcone synthase-like domain: Ketoacyl-ACP synthase III (FabH) species: Thermus thermophilus [TaxId: 274]
Probab=99.24 E-value=7.6e-12 Score=107.90 Aligned_cols=119 Identities=22% Similarity=0.335 Sum_probs=89.3
Q ss_pred HHHHHHHHHHHHHHHcCCCCccccccccccceEEEeecCCCccchHHHHHHHHHhCCCCcCCcCcchhhhhhhHHHHhhh
Q 012221 126 CLRYCIVAGKKALEDADLGADISKKIDKERAGVLVGTGMGGLTVFSDGVQALIEKGHRKITPFFIPYAITNMGSALLAID 205 (468)
Q Consensus 126 ~~~l~l~a~~~AL~dAgl~~~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~ia~~ 205 (468)
...|+..|+++||+++|+ +++++| -|++++..+.+ .....+..+...
T Consensus 49 ~~~ma~~Aa~~aL~~agi---~~~dId----lli~~s~t~~~--------------------------~~p~~a~~v~~~ 95 (172)
T d1ub7a1 49 TSDLAFKAVEDLLRRHPG---ALEGVD----AVIVATNTPDA--------------------------LFPDTAALVQAR 95 (172)
T ss_dssp HHHHHHHHHHHHHHHSTT---TTTTEE----EEEEECSSCSE--------------------------EESCHHHHHHHH
T ss_pred ccHHHHHHHHHHHhhcCc---ccccce----EEEEecccccc--------------------------cccchHHHHHHH
Confidence 568999999999999999 555665 35555532211 122236677888
Q ss_pred hCCCCcceeecccChHHHHHHHHHHHHHHhCCCCEEEEEeeccccchhhhhHhhhccccccCCCCCCCCCCCCCCCCCCe
Q 012221 206 LGFMGPNYSISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWDKDRDGF 285 (468)
Q Consensus 206 lgl~Gp~~~v~~acas~l~Al~~A~~~I~~G~~d~~lvgG~e~~~~p~~~~~~~~~~~l~~~~~~~~~~~rpfd~~~~G~ 285 (468)
||.+.+++.|..+|++++.+|..|..++++|.++.+|++++|.. +.. +. |+.....+
T Consensus 96 Lg~~~~~~di~~~C~g~~~al~~a~~~~~~~~~~~~Lvv~~e~~-S~~----------~~------------~~d~~~~~ 152 (172)
T d1ub7a1 96 FGLKAFAYDLLAGCPGWIYALAQAHALVEAGLAQKVLAVGAEAL-SKI----------ID------------WNDRATAV 152 (172)
T ss_dssp TTCCCEEEEEECSTTHHHHHHHHHHHHHHTTSCSEEEEEEEECG-GGT----------SC------------TTCHHHHT
T ss_pred hccCccceeehhccccHHHHHHHHhhhhhcCCcceeEEeccccc-ccc----------cC------------CCCcCeEE
Confidence 99888999999999999999999999999999999999999962 111 00 12223355
Q ss_pred eecceeEEEEecchh
Q 012221 286 VMGEGAGVLVMESLE 300 (468)
Q Consensus 286 v~gEGaaavvL~~~~ 300 (468)
++||||+|+||++.+
T Consensus 153 lfGDgAaA~ll~~~~ 167 (172)
T d1ub7a1 153 LFGDGGGAAVVGKVR 167 (172)
T ss_dssp TBCCEEEEEEEECCC
T ss_pred EecceeEEEEEEEcC
Confidence 789999999998754
|
| >d1hnja1 c.95.1.2 (A:1-174) Ketoacyl-ACP synthase III (FabH) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Chalcone synthase-like domain: Ketoacyl-ACP synthase III (FabH) species: Escherichia coli [TaxId: 562]
Probab=99.23 E-value=4.6e-12 Score=109.55 Aligned_cols=120 Identities=21% Similarity=0.317 Sum_probs=90.5
Q ss_pred HHHHHHHHHHHHHHHHcCCCCccccccccccceEEEeecCCCccchHHHHHHHHHhCCCCcCCcCcchhhhhhhHHHHhh
Q 012221 125 DCLRYCIVAGKKALEDADLGADISKKIDKERAGVLVGTGMGGLTVFSDGVQALIEKGHRKITPFFIPYAITNMGSALLAI 204 (468)
Q Consensus 125 ~~~~l~l~a~~~AL~dAgl~~~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~ia~ 204 (468)
....|+.+|+++||+++|+ .++++| -+++++..+.. .....+..+..
T Consensus 50 ~~~~la~~Aa~~al~~a~~---~~~~Id----~li~~s~~~~~--------------------------~~P~~a~~v~~ 96 (174)
T d1hnja1 50 TVSTMGFEAATRAIEMAGI---EKDQIG----LIVVATTSATH--------------------------AFPSAACQIQS 96 (174)
T ss_dssp CHHHHHHHHHHHHHHHHTC---CGGGCC----EEEEECSCCSC--------------------------SSSCHHHHHHH
T ss_pred cchHHHHHHHHHhhhhccc---cccccc----EEEEecCCccc--------------------------cccchhhhhhh
Confidence 3567999999999999999 566666 46666643221 11223778888
Q ss_pred hhCCCC-cceeecccChHHHHHHHHHHHHHHhCCCCEEEEEeeccccchhhhhHhhhccccccCCCCCCCCCCCCCCCCC
Q 012221 205 DLGFMG-PNYSISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWDKDRD 283 (468)
Q Consensus 205 ~lgl~G-p~~~v~~acas~l~Al~~A~~~I~~G~~d~~lvgG~e~~~~p~~~~~~~~~~~l~~~~~~~~~~~rpfd~~~~ 283 (468)
.||++. +++.|..+|++++.||..|..+|++|.++.+|+.++|.. +.. +. +.....
T Consensus 97 ~Lgl~~~~~~di~~~C~g~~~al~~A~~~i~sg~~~~~Lvv~~e~~-S~~----------~~------------~~d~~~ 153 (174)
T d1hnja1 97 MLGIKGCPAFDVAAACAGFTYALSVADQYVKSGAVKYALVVGSDVL-ART----------CD------------PTDRGT 153 (174)
T ss_dssp HHTCCSSCEEEECCGGGHHHHHHHHHHHHHHTTSCSEEEEEEEECH-HHH----------SC------------TTCHHH
T ss_pred ccCCCchhhhhhhhhhccHHHHHHHHHHHHhcCCcceeEEEeeehh-hcc----------cC------------CCCCCe
Confidence 899986 888999999999999999999999999999999999962 221 11 111122
Q ss_pred CeeecceeEEEEecchh
Q 012221 284 GFVMGEGAGVLVMESLE 300 (468)
Q Consensus 284 G~v~gEGaaavvL~~~~ 300 (468)
.+++||||+|+||++.+
T Consensus 154 ~~lfGDgA~A~vl~~~~ 170 (174)
T d1hnja1 154 IIIFGDGAGAAVLAASE 170 (174)
T ss_dssp HTTBCCEEEEEEEEEES
T ss_pred EEEeceeeEEEEEEeCC
Confidence 35789999999999754
|
| >d1u0ma1 c.95.1.2 (A:2-201) Putative polyketide synthase SCO1206 {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Chalcone synthase-like domain: Putative polyketide synthase SCO1206 species: Streptomyces coelicolor [TaxId: 1902]
Probab=98.92 E-value=1.8e-09 Score=94.99 Aligned_cols=117 Identities=21% Similarity=0.245 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHHHHHcCCCCccccccccccceEEEeecCCCccchHHHHHHHHHhCCCCcCCcCcchhhhhhhHHHHhhh
Q 012221 126 CLRYCIVAGKKALEDADLGADISKKIDKERAGVLVGTGMGGLTVFSDGVQALIEKGHRKITPFFIPYAITNMGSALLAID 205 (468)
Q Consensus 126 ~~~l~l~a~~~AL~dAgl~~~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~ia~~ 205 (468)
...|+..|+++||+++|+ +++++| .+++.++.+ +.. + ..+..+...
T Consensus 75 a~~la~~Aa~~aL~~ag~---~~~dId----~lI~~s~t~----------------------~~~----P-~~aa~v~~~ 120 (200)
T d1u0ma1 75 AKSRVPAVIQRALDDAEL---LATDID----VIIYVSCTG----------------------FMM----P-SLTAWLINE 120 (200)
T ss_dssp HHHHHHHHHHHHHHHHTC---CGGGCS----EEEEECSSS----------------------CCS----S-CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCC---Chhhhh----eEEEeccCC----------------------CCc----c-hhHHHHHHH
Confidence 457999999999999999 666666 455555321 111 1 236678888
Q ss_pred hCCCCc--ceee-cccChHHHHHHHHHHHHHHhCCCCEEEEEeeccccchhhhhHhhhccccccCCCCCCCCCCCCCCCC
Q 012221 206 LGFMGP--NYSI-STACATSNYCFYAAANHIRRGEADLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWDKDR 282 (468)
Q Consensus 206 lgl~Gp--~~~v-~~acas~l~Al~~A~~~I~~G~~d~~lvgG~e~~~~p~~~~~~~~~~~l~~~~~~~~~~~rpfd~~~ 282 (468)
+|++.. .+.+ ..+|++++.+|..|..+|++|..+.+||.++|.+. .. .+|-|.+.
T Consensus 121 lg~~~~~~~~~i~~~gC~g~~~al~~A~~~l~~~~~~~vLvv~~e~~S-~~---------------------~~~~d~~~ 178 (200)
T d1u0ma1 121 MGFDSTTRQIPIAQLGCAAGGAAINRAHDFCTAYPEANALIVACEFCS-LC---------------------YQPTDLGV 178 (200)
T ss_dssp TTCCTTCEEEEECSCGGGHHHHHHHHHHHHHHHSTTCEEEEEEEEEGG-GG---------------------CCTTCCSH
T ss_pred HhcCCCeeEeccccchhhHHHHHHHHHHHHHHhCCCCEEEEEEEeccc-cc---------------------cCCCCCCh
Confidence 998763 4455 57999999999999999999999999999999621 10 11111111
Q ss_pred ----CCeeecceeEEEEecc
Q 012221 283 ----DGFVMGEGAGVLVMES 298 (468)
Q Consensus 283 ----~G~v~gEGaaavvL~~ 298 (468)
...++||||+|+||..
T Consensus 179 ~~~~~~~lFgDGAaA~ll~~ 198 (200)
T d1u0ma1 179 GSLLCNGLFGDGIAAAVVRG 198 (200)
T ss_dssp HHHHHHHHBCEEEEEEEEET
T ss_pred hhhhcccccccccEEEEEec
Confidence 1246899999999975
|
| >d1bi5a1 c.95.1.2 (A:1-235) Chalcone synthase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Chalcone synthase-like domain: Chalcone synthase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.81 E-value=2.4e-08 Score=89.81 Aligned_cols=89 Identities=20% Similarity=0.171 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHHHHHcCCCCccccccccccceEEEeecCCCccchHHHHHHHHHhCCCCcCCcCcchhhhhhhHHHHhhh
Q 012221 126 CLRYCIVAGKKALEDADLGADISKKIDKERAGVLVGTGMGGLTVFSDGVQALIEKGHRKITPFFIPYAITNMGSALLAID 205 (468)
Q Consensus 126 ~~~l~l~a~~~AL~dAgl~~~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~ia~~ 205 (468)
...|+..|+++||+++|+ +++++| .|++.++.+.. .+ . ....+...
T Consensus 102 ~~~la~~Aa~~aL~~a~~---~~~dId----~lI~~t~t~~~----------------------~p----~-~~a~~~~~ 147 (235)
T d1bi5a1 102 VPRLGKEAAVKAIKEWGQ---PKSKIT----HLIVCTTSGVD----------------------MP----G-ADYQLTKL 147 (235)
T ss_dssp HHHHHHHHHHHHHHHHCS---CGGGCC----EEEEEESSCCC----------------------SS----C-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCC---ChhHCc----EEEEecccCCc----------------------cC----c-cHHHHHHH
Confidence 457999999999999999 666666 56666653211 11 1 13345555
Q ss_pred hCCCCcc--e-eecccChHHHHHHHHHHHHHHhCCCCEEEEEeecc
Q 012221 206 LGFMGPN--Y-SISTACATSNYCFYAAANHIRRGEADLMLAGGTEA 248 (468)
Q Consensus 206 lgl~Gp~--~-~v~~acas~l~Al~~A~~~I~~G~~d~~lvgG~e~ 248 (468)
+++.... + .+..+|++++.+|..|..+|++|..+.+||+++|.
T Consensus 148 l~~~~~~~~~~~~~~~C~g~~~al~~A~~~i~~~~~~~vLvV~~E~ 193 (235)
T d1bi5a1 148 LGLRPYVKRYMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEV 193 (235)
T ss_dssp HTCCTTCEEEEEESCCTTHHHHHHHHHHHHHHTSTTCEEEEEEEEC
T ss_pred HhcCCCceEEeeecCccchHHHHHHHHHHHHHcCCCCeEEEEEeee
Confidence 6665433 3 34778999999999999999999999999999996
|
| >d1xpma1 c.95.1.2 (A:2-167) 3-hydroxy-3-methylglutaryl CoA synthase MvaS {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Chalcone synthase-like domain: 3-hydroxy-3-methylglutaryl CoA synthase MvaS species: Staphylococcus aureus [TaxId: 1280]
Probab=98.79 E-value=8.8e-09 Score=87.80 Aligned_cols=160 Identities=16% Similarity=0.086 Sum_probs=100.9
Q ss_pred EEEEeeceeccCC-CCHHHHHHHHHcCCCCccccCCCCCCCCCCccccccCCCCCCCCCCccccccCCHHHHHHHHHHHH
Q 012221 58 VVITGMGLVSVFG-NDVDAYYNKLLDGESGITMIDRFDASKFPTRFGGQIRGFSAEGYIDGKNDRRLDDCLRYCIVAGKK 136 (468)
Q Consensus 58 V~ItG~g~~~p~g-~~~~~~~~~L~~G~~~i~~~~~~~~~~~~~~~~g~v~~~d~~~~i~~~~~~~~d~~~~l~l~a~~~ 136 (468)
|-|.|+|..+|.- .+.+++.+.. |.+. ..+. +..+...+ .+..+.| ....|++.|+++
T Consensus 2 VgI~~~~~ylP~~~v~~~e~~~~~--g~~~-~~i~--~~~Gi~~r-----------~~~~~~E-----~~~~ma~~Aa~~ 60 (166)
T d1xpma1 2 IGIDKINFYVPKYYVDMAKLAEAR--QVDP-NKFL--IGIGQTEM-----------AVSPVNQ-----DIVSMGANAAKD 60 (166)
T ss_dssp EEEEEEEEECCSEEEEHHHHHHHT--TSCH-HHHH--TTTCCSEE-----------EECCTTC-----CHHHHHHHHHHT
T ss_pred eeEeEEEEECCCeEEcHHHHHHHh--CCCH-HHHH--HhcCcEEE-----------EeCCCcc-----CHHHHHHHHHHh
Confidence 7899999999998 5777766542 3221 0000 01111111 0111111 245688889888
Q ss_pred HHHHcCCCCccccccccccceEEEeecCCCccchHHHHHHHHHhCCCCcCCcCcchhhhhhhHHHHhhhhCCCC--ccee
Q 012221 137 ALEDADLGADISKKIDKERAGVLVGTGMGGLTVFSDGVQALIEKGHRKITPFFIPYAITNMGSALLAIDLGFMG--PNYS 214 (468)
Q Consensus 137 AL~dAgl~~~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~ia~~lgl~G--p~~~ 214 (468)
+|++.+. +++| -+++++..+. ......+..+...+|++. .++.
T Consensus 61 al~~~~~-----~~id----~li~~t~~~~--------------------------~~~p~~a~~v~~~lg~~~~~~~~d 105 (166)
T d1xpma1 61 IITDEDK-----KKIG----MVIVATESAV--------------------------DAAKAAAVQIHNLLGIQPFARCFE 105 (166)
T ss_dssp TCCHHHH-----HHEE----EEEEECSSCS--------------------------BSSSCHHHHHHHHTTCCSSCEEEE
T ss_pred hhccccC-----CCCC----eEEEeccccc--------------------------cccchhHHHHHHhhccccceEEee
Confidence 8876532 3333 2444443221 112233677788888865 6688
Q ss_pred ecccChHHHHHHHHHHHHHHhCCCCEEEEEeeccccchhhhhHhhhccccccCCCCCCCCCCCCCCCCCCeeecceeEEE
Q 012221 215 ISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWDKDRDGFVMGEGAGVL 294 (468)
Q Consensus 215 v~~acas~l~Al~~A~~~I~~G~~d~~lvgG~e~~~~p~~~~~~~~~~~l~~~~~~~~~~~rpfd~~~~G~v~gEGaaav 294 (468)
+..+|++++.||..|..+|++|....+||.+.|... . .++ ..+-+.+||||+|+
T Consensus 106 v~~~C~g~~~al~~A~~~i~~~~~~~alvV~sd~~~-~------------------------~~~-~~~~~~fGDGA~A~ 159 (166)
T d1xpma1 106 MKEACYAATPAIQLAKDYLATRPNEKVLVIATDTAR-Y------------------------GLN-SGGEPTQGAGAVAM 159 (166)
T ss_dssp EESTTTTHHHHHHHHHHHHTTCTTCEEEEEEEEEEC-C------------------------CTT-CSSGGGCEEEEEEE
T ss_pred ecccHHHHHHHHHHHhhHHhcCCCCeEEEEEEceEe-c------------------------cCC-CCCCccCCCeeEEE
Confidence 999999999999999999999999999999998511 0 001 11235789999999
Q ss_pred Eecch
Q 012221 295 VMESL 299 (468)
Q Consensus 295 vL~~~ 299 (468)
||++.
T Consensus 160 ll~~~ 164 (166)
T d1xpma1 160 VIAHN 164 (166)
T ss_dssp EEEES
T ss_pred EEecC
Confidence 99864
|
| >d1u6ea2 c.95.1.2 (A:175-317) Ketoacyl-ACP synthase III (FabH) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Chalcone synthase-like domain: Ketoacyl-ACP synthase III (FabH) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.27 E-value=0.001 Score=54.17 Aligned_cols=98 Identities=15% Similarity=0.202 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHHcCCCCCCcCEEEEccCCCccCCHHHHHHHHHHhccC-CCceeeecccccCccccchhHHHHHHHHHHH
Q 012221 334 GVSSCIESSLEDAGVSPEEVNYINAHATSTLAGDLAEINAIKKVFKNT-TGIKINATKSMIGHCLGAAGGLEAIATVKAI 412 (468)
Q Consensus 334 ~~~~~i~~al~~Agl~~~dId~v~~h~~gt~~~D~~E~~al~~~f~~~-~~~~v~s~k~~~Gh~~~AsG~~~l~~~~~~l 412 (468)
.+.++++++|+++|++++|||++..|..+... .+++.+.++-. ++.. ...-..+||+.+|+=.+.+.. ++
T Consensus 49 ~v~~~i~~~L~~~gl~~~dId~~i~Hqa~~~i-----~~~v~~~lgl~~ek~~-~~~~~~~GNt~sasip~~L~~---a~ 119 (148)
T d1u6ea2 49 KMGDVGRRAMDAAGVRPDQIDVFVPHQANSRI-----NELLVKNLQLRPDAVV-ANDIEHTGNTSAASIPLAMAE---LL 119 (148)
T ss_dssp HHHHHHHHHHHHHTCCGGGCCEEEECCSCHHH-----HHHHHHHHTCCTTCEE-CCTHHHHCBCGGGHHHHHHHH---HH
T ss_pred HHHHHHHHHHHHcCCCcccccEEEeccccHHH-----HHHHHHhcCCCchhhh-hhhHHhhCCCccchHHHHHHH---HH
Confidence 45568999999999999999999999776543 45566666542 2222 234556799888875555443 45
Q ss_pred hcCCcCCCCCCCCCCCCCCcccccccccccCccEEEEEcccccCeeeEEEEe
Q 012221 413 TTGWLHPSINQFNPEPSVEFDTVANKKQQHEVNVAISNSFGFGGHNSVVAFS 464 (468)
Q Consensus 413 ~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~g~gG~n~~~vl~ 464 (468)
+.+.+. +-...+..+||.|=+-+++|++
T Consensus 120 ~~g~i~------------------------~Gd~vll~gfG~G~s~~a~llr 147 (148)
T d1u6ea2 120 TTGAAK------------------------PGDLALLIGYGAGLSYAAQVVR 147 (148)
T ss_dssp HHTSSC------------------------TTCEEEEEEEETTTEEEEEEEE
T ss_pred HcCCCC------------------------CCCEEEEEEEchhhhheEEEEe
Confidence 555431 1235566789987677777765
|
| >d1ub7a2 c.95.1.2 (A:174-322) Ketoacyl-ACP synthase III (FabH) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Chalcone synthase-like domain: Ketoacyl-ACP synthase III (FabH) species: Thermus thermophilus [TaxId: 274]
Probab=96.75 E-value=0.0038 Score=50.71 Aligned_cols=96 Identities=19% Similarity=0.272 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHcCCCCCCcCEEEEccCCCccCCHHHHHHHHHHhcc-CCCceeeecccccCccccchhHHHHHHHHHHHh
Q 012221 335 VSSCIESSLEDAGVSPEEVNYINAHATSTLAGDLAEINAIKKVFKN-TTGIKINATKSMIGHCLGAAGGLEAIATVKAIT 413 (468)
Q Consensus 335 ~~~~i~~al~~Agl~~~dId~v~~h~~gt~~~D~~E~~al~~~f~~-~~~~~v~s~k~~~Gh~~~AsG~~~l~~~~~~l~ 413 (468)
+..+|+++|+++|++++|||++..|..+... .+.+.+.++- .+..+ ..-..+||+.+|+=.+.+ ...++
T Consensus 49 vp~~i~~~L~~~g~~~~dId~~i~Hqa~~~~-----~~~i~~~lgi~~~k~~--~~~~~~Gn~~sasip~~L---~~~~~ 118 (149)
T d1ub7a2 49 MNTATLEAIEKAGLTPEDIRLFVPHQANLRI-----IDAARERLGLPWERVA--VNVDRYGNTSTASIPLAL---KEAVD 118 (149)
T ss_dssp HHHHHHHHHHHHTCCGGGCSEEEECCSCHHH-----HHHHHHTTTCCGGGBC--CCHHHHCBCGGGHHHHHH---HHHHH
T ss_pred HHHHHHHHHHhhccccccccEEEeeccchHH-----HHHHHhhccchhhHHH--HHHHHhcCCcchhHHHHH---HHHHH
Confidence 4568999999999999999999999766543 3344444442 11222 223457998887754433 34455
Q ss_pred cCCcCCCCCCCCCCCCCCcccccccccccCccEEEEEcccccCeeeEEEEe
Q 012221 414 TGWLHPSINQFNPEPSVEFDTVANKKQQHEVNVAISNSFGFGGHNSVVAFS 464 (468)
Q Consensus 414 ~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~g~gG~n~~~vl~ 464 (468)
.+.+. +-...+..+||.|-+-.++|++
T Consensus 119 ~~~~~------------------------~Gd~vll~g~G~G~s~ga~llr 145 (149)
T d1ub7a2 119 AGRIR------------------------EGDHVLLVSFGAGLTWAAAVLT 145 (149)
T ss_dssp HTSSC------------------------TTCEEEEEEEETTTEEEEEEEE
T ss_pred cCCCC------------------------CCCEEEEEEEchHhhhEEEEEE
Confidence 55331 2235566799988777777775
|
| >d1mzja2 c.95.1.2 (A:184-336) Priming beta-ketosynthase from the r1128 polyketide biosynthetic pathway {Streptomyces sp. r1128 [TaxId: 140437]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Chalcone synthase-like domain: Priming beta-ketosynthase from the r1128 polyketide biosynthetic pathway species: Streptomyces sp. r1128 [TaxId: 140437]
Probab=96.43 E-value=0.012 Score=47.77 Aligned_cols=101 Identities=16% Similarity=0.135 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHHcCCCCCCcCEEEEccCCCccCCHHHHHHHHHHhccCCCceeeecccccCccccchhHHHHHHHHHHHh
Q 012221 334 GVSSCIESSLEDAGVSPEEVNYINAHATSTLAGDLAEINAIKKVFKNTTGIKINATKSMIGHCLGAAGGLEAIATVKAIT 413 (468)
Q Consensus 334 ~~~~~i~~al~~Agl~~~dId~v~~h~~gt~~~D~~E~~al~~~f~~~~~~~v~s~k~~~Gh~~~AsG~~~l~~~~~~l~ 413 (468)
.+.++++++|+++|++++|||++..|..+.. -.+.+.+.++-...-.+...-..+||+.+||=.+. ....++
T Consensus 49 ~vp~~i~~~L~~~gl~~~dId~~i~Hq~~~~-----~~~~v~~~lgi~~ek~~~~~~~~~GNt~Sasip~~---L~~~~~ 120 (153)
T d1mzja2 49 DVVPAAREALEVAGLTVGDLVAFVPHQANLR-----IIDVLVDRLGVPEHVVVSRDAEDTGNTSSASVALA---LDRLVR 120 (153)
T ss_dssp HHHHHHHHHHHTTTCCGGGCSEEEECCSCHH-----HHHHHHHHHTCCTTSEECCTHHHHCBCTTHHHHHH---HHHHHH
T ss_pred HHHHHHHHHHHHhCCCcccCCEEEEcCCcHH-----HHHHHHHHhCCCchhcchhhhhhcCCcccchHHHH---HHHHHH
Confidence 5566899999999999999999999977654 34455555554211122223355799776643222 233455
Q ss_pred cCCcCCCCCCCCCCCCCCcccccccccccCccEEEEEcccccCeeeEEEEeec
Q 012221 414 TGWLHPSINQFNPEPSVEFDTVANKKQQHEVNVAISNSFGFGGHNSVVAFSAF 466 (468)
Q Consensus 414 ~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~g~gG~n~~~vl~~~ 466 (468)
.+.+. +-...+..+||.|=+-+..+|.-+
T Consensus 121 ~~~~~------------------------~Gd~ill~~fG~G~s~~~~~l~~~ 149 (153)
T d1mzja2 121 SGAVP------------------------GGGPALMIGFGAGLSYAGQALLLP 149 (153)
T ss_dssp HTSSC------------------------TTCEEEEEEEETTTEEEEEEEECC
T ss_pred cCCCC------------------------CCCEEEEEEEchhhhhhEEEEEec
Confidence 54331 123455568887655556666554
|
| >d1hnja2 c.95.1.2 (A:175-317) Ketoacyl-ACP synthase III (FabH) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Chalcone synthase-like domain: Ketoacyl-ACP synthase III (FabH) species: Escherichia coli [TaxId: 562]
Probab=96.41 E-value=0.0087 Score=48.08 Aligned_cols=97 Identities=13% Similarity=0.183 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHcCCCCCCcCEEEEccCCCccCCHHHHHHHHHHhccC-CCceeeecccccCccccchhHHHHHHHHHHH
Q 012221 334 GVSSCIESSLEDAGVSPEEVNYINAHATSTLAGDLAEINAIKKVFKNT-TGIKINATKSMIGHCLGAAGGLEAIATVKAI 412 (468)
Q Consensus 334 ~~~~~i~~al~~Agl~~~dId~v~~h~~gt~~~D~~E~~al~~~f~~~-~~~~v~s~k~~~Gh~~~AsG~~~l~~~~~~l 412 (468)
.+.++++++|+++|++++|||++..|..+... .+.+.+.++-. ++++ ..-..+||+.+|+=.+.+- ..+
T Consensus 45 ~~~~~i~~~L~~~g~~~~dId~~i~Hq~~~~~-----~~~~~~~l~l~~~k~~--~~~~~~GN~~sasip~~L~---~~~ 114 (143)
T d1hnja2 45 ELAHIVDETLAANNLDRSQLDWLVPHQANLRI-----ISATAKKLGMSMDNVV--VTLDRHGNTSAASVPCALD---EAV 114 (143)
T ss_dssp HHHHHHHHHHHHTTCCGGGCCEEEECCSCHHH-----HHHHHHHTTCCGGGBC--CCHHHHCBCGGGHHHHHHH---HHH
T ss_pred hhhHHHHHHHHHhhhcccccceEEeccCchHH-----HHHHHHhCccchhhhh--hhhhhhcccccchHHHHHH---HHH
Confidence 34668999999999999999999999876654 33444555431 2222 2344679988776554433 345
Q ss_pred hcCCcCCCCCCCCCCCCCCcccccccccccCccEEEEEcccccCeeeEEEEe
Q 012221 413 TTGWLHPSINQFNPEPSVEFDTVANKKQQHEVNVAISNSFGFGGHNSVVAFS 464 (468)
Q Consensus 413 ~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~g~gG~n~~~vl~ 464 (468)
+.+.+ .+-...+..+||.|=+-++++++
T Consensus 115 ~~~~~------------------------~~Gd~vll~g~G~G~s~g~~llr 142 (143)
T d1hnja2 115 RDGRI------------------------KPGQLVLLEAFGGGFTWGSALVR 142 (143)
T ss_dssp HTTCS------------------------CTTCEEEEEEEETTTEEEEEEEE
T ss_pred HhCCC------------------------CCCCEEEEEEEehhhhhEEEEEE
Confidence 55433 12235566789988676777764
|
| >d1u0ma2 c.95.1.2 (A:202-349) Putative polyketide synthase SCO1206 {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Chalcone synthase-like domain: Putative polyketide synthase SCO1206 species: Streptomyces coelicolor [TaxId: 1902]
Probab=94.46 E-value=0.041 Score=44.16 Aligned_cols=77 Identities=12% Similarity=0.167 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHcCCCCCCcCEEEEccCCCccCCHHHHHHHHHHhcc-CCCcee-eecccccCccccchhHHHHHHHHH
Q 012221 333 LGVSSCIESSLEDAGVSPEEVNYINAHATSTLAGDLAEINAIKKVFKN-TTGIKI-NATKSMIGHCLGAAGGLEAIATVK 410 (468)
Q Consensus 333 ~~~~~~i~~al~~Agl~~~dId~v~~h~~gt~~~D~~E~~al~~~f~~-~~~~~v-~s~k~~~Gh~~~AsG~~~l~~~~~ 410 (468)
..+..+++++|+++|++++|||++..|..+... ++.+.+.++- .+.+.. ...-..+||+.+|+=. +..-.
T Consensus 43 ~~~~~~i~~~l~~~g~~~~did~~~~Hq~~~~i-----~~~i~~~Lgl~~~k~~~s~~~l~~~GN~~sasi~---~~L~~ 114 (148)
T d1u0ma2 43 EPLAPALKELAGEHGWDASDLDFYIVHAGGPRI-----LDDLSTFLEVDPHAFRFSRATLTEYGNIASAVVL---DALRR 114 (148)
T ss_dssp HHHHHHHHHHHHTTSCCSSCCSCCEEECSHHHH-----HHHHHHHSCSCGGGGHHHHHHHHHTCBCTTHHHH---HHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHCCEEEECCCCHHH-----HHHHHHHhCCChhhhhHHHHHHHhcCCCCcchHH---HHHHH
Confidence 456788999999999999999999999776644 4445555542 112211 1123456998877622 22234
Q ss_pred HHhcCCc
Q 012221 411 AITTGWL 417 (468)
Q Consensus 411 ~l~~~~~ 417 (468)
.++++.+
T Consensus 115 ~~~~~~~ 121 (148)
T d1u0ma2 115 LFDEGGV 121 (148)
T ss_dssp HHHSCCC
T ss_pred HHHcCCC
Confidence 4455543
|
| >d1ee0a2 c.95.1.2 (A:236-395) Pyrone synthase (PyS, chalcone synthase 2) {Gerbera hybrid cultivar [TaxId: 18101]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Chalcone synthase-like domain: Pyrone synthase (PyS, chalcone synthase 2) species: Gerbera hybrid cultivar [TaxId: 18101]
Probab=93.05 E-value=0.33 Score=39.06 Aligned_cols=110 Identities=11% Similarity=0.119 Sum_probs=69.3
Q ss_pred hHHHHHHHHHHHHHcCCCCCCcCEEEEccCCCccCCHHHHHHHHHHhcc-CCCceee-ecccccCccccchhHHHHHHHH
Q 012221 332 GLGVSSCIESSLEDAGVSPEEVNYINAHATSTLAGDLAEINAIKKVFKN-TTGIKIN-ATKSMIGHCLGAAGGLEAIATV 409 (468)
Q Consensus 332 ~~~~~~~i~~al~~Agl~~~dId~v~~h~~gt~~~D~~E~~al~~~f~~-~~~~~v~-s~k~~~Gh~~~AsG~~~l~~~~ 409 (468)
...+...+++.|++++++.+|||++.+|--|.... +++.+.++- .+.+..+ .+-..+|++.+||=..-+-.+.
T Consensus 46 ~~~v~~~v~~~l~~~gl~~~di~~~v~Hqgg~~Il-----d~i~~~L~L~~~~l~~s~~vl~~yGNtSSaSI~~vL~~~~ 120 (160)
T d1ee0a2 46 AKNIENAAEKALSPLGITDWNSVFWMVHPGGRAIL-----DQVERKLNLKEDKLRASRHVLSEYGNLISACVLFIIDEVR 120 (160)
T ss_dssp HHHHHHHHHHHHGGGTCCCGGGSEEEECCSSHHHH-----HHHHHHTTCCTTTTHHHHHHHHHHCBCGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccCCccccceEeecCCcHHHH-----HHHHHHcCCCHHHHHHHHHHHHHhCCCccchHHHHHHHHH
Confidence 35667789999999999999999999997776553 444455542 2223221 3344568988777554444433
Q ss_pred HHHhcCCcCCCCCCCCCCCCCCcccccccccccCccEEEEEcccccCeeeEEEEeec
Q 012221 410 KAITTGWLHPSINQFNPEPSVEFDTVANKKQQHEVNVAISNSFGFGGHNSVVAFSAF 466 (468)
Q Consensus 410 ~~l~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~g~gG~n~~~vl~~~ 466 (468)
..-.. .+ .........+++..+||-|=+-..++|++.
T Consensus 121 ~~~~~---~~-----------------~~~~g~~~d~~ll~afG~Glt~~~~llr~~ 157 (160)
T d1ee0a2 121 KRSMA---EG-----------------KSTTGEGLDCGVLFGFGPGMTVETVVLRSV 157 (160)
T ss_dssp HHHHH---TT-----------------CSBTBTTBSEEEEEEEETTTEEEEEEEEEC
T ss_pred hhhhh---cC-----------------CCCcCCCcCEEEEEEEChHHHHHHHHHeec
Confidence 22211 10 011112335677789999888888998875
|
| >d1bi5a2 c.95.1.2 (A:236-389) Chalcone synthase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Chalcone synthase-like domain: Chalcone synthase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=92.94 E-value=0.33 Score=38.84 Aligned_cols=109 Identities=14% Similarity=0.094 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHHHcCCCCCCcCEEEEccCCCccCCHHHHHHHHHHhcc-CCCceee-ecccccCccccchhHHHHHHHHH
Q 012221 333 LGVSSCIESSLEDAGVSPEEVNYINAHATSTLAGDLAEINAIKKVFKN-TTGIKIN-ATKSMIGHCLGAAGGLEAIATVK 410 (468)
Q Consensus 333 ~~~~~~i~~al~~Agl~~~dId~v~~h~~gt~~~D~~E~~al~~~f~~-~~~~~v~-s~k~~~Gh~~~AsG~~~l~~~~~ 410 (468)
..+...+++.|+++|++.+|||++..|.-|.... +++.+.++- ...+..+ .+-..+|++-+||=..-+-.+..
T Consensus 42 ~~i~~~~~~~l~~~gl~~~di~~~v~Hqgg~~Il-----d~v~~~L~L~~~~~~~s~~vl~~yGN~SSasi~~vL~~~~~ 116 (154)
T d1bi5a2 42 KNITKALVEAFEPLGISDYNSIFWIAHPGGPAIL-----DQVEQKLALKPEKMNATREVLSEYGNMSSACVLFILDEMRK 116 (154)
T ss_dssp HHHHHHHHHHHGGGTCCCTTSSEEEECCSSHHHH-----HHHHHHHTCCGGGGHHHHHHHHHHCBCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCccccceEeeccccHHHH-----HHHHHHhCCCHHHHHHhHHHHHhcCCCCcccHHHHHHHHHH
Confidence 4667789999999999999999999997776554 444555543 1222221 22445688887764444433333
Q ss_pred HHhcCCcCCCCCCCCCCCCCCcccccccccccCccEEEEEcccccCeeeEEEEeec
Q 012221 411 AITTGWLHPSINQFNPEPSVEFDTVANKKQQHEVNVAISNSFGFGGHNSVVAFSAF 466 (468)
Q Consensus 411 ~l~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~g~gG~n~~~vl~~~ 466 (468)
.-+.. +. .........++..+||-|=+-..++|++.
T Consensus 117 ~~~~~---~~-----------------~~~g~~~~~~~~~aFG~Glt~~~~llr~~ 152 (154)
T d1bi5a2 117 KSTQN---GL-----------------KTTGEGLEWGVLFGFGPGLTIETVVLRSV 152 (154)
T ss_dssp HHHHT---TC-----------------SBTTTTCSEEEEEEEETTTEEEEEEEEEC
T ss_pred hhhcc---CC-----------------cccCCCcCEEEEEEEchHHhHHHHHHhcC
Confidence 32211 00 01112235667789999888888888875
|
| >d1u0ua2 c.95.1.2 (A:238-393) Dihydropinosylvin synthase {Scots pine (Pinus sylvestris) [TaxId: 3349]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Chalcone synthase-like domain: Dihydropinosylvin synthase species: Scots pine (Pinus sylvestris) [TaxId: 3349]
Probab=90.68 E-value=0.73 Score=36.76 Aligned_cols=110 Identities=15% Similarity=0.115 Sum_probs=68.0
Q ss_pred hHHHHHHHHHHHHHcCCCCCCcCEEEEccCCCccCCHHHHHHHHHHhcc-CCCceee-ecccccCccccchhHHHHHHHH
Q 012221 332 GLGVSSCIESSLEDAGVSPEEVNYINAHATSTLAGDLAEINAIKKVFKN-TTGIKIN-ATKSMIGHCLGAAGGLEAIATV 409 (468)
Q Consensus 332 ~~~~~~~i~~al~~Agl~~~dId~v~~h~~gt~~~D~~E~~al~~~f~~-~~~~~v~-s~k~~~Gh~~~AsG~~~l~~~~ 409 (468)
...+...++++|++++++.+|||++..|.-|....|. +.+.++- ...+..+ .+-..+|++.+||=..-+-.+.
T Consensus 42 ~~~i~~~~~~~l~~~~~~~~did~~i~Hqgg~~Ild~-----v~~~L~L~~~k~~~s~~~l~~~GN~sSasip~~L~~~~ 116 (156)
T d1u0ua2 42 SANIENCMVEAFSQFKISDWNKLFWVVHPGGRAILDR-----VEAKLNLDPTKLIPTRHVMSEYGNMSSACVHFILDQTR 116 (156)
T ss_dssp HHHHHHHHHHHHGGGTCCCGGGSEEEECCSCHHHHHH-----HHHHHTCCTTTTHHHHHHHHHHCBCGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCChhhCceEeecCCcHHHHHH-----HHHHhCCCcccchhhHHHHhhcCCCCcccHHHHHHHHH
Confidence 3466778999999999999999999999777765444 4444442 1222221 2234668877776444333332
Q ss_pred HHHh-cCCcCCCCCCCCCCCCCCcccccccccccCccEEEEEcccccCeeeEEEEeecC
Q 012221 410 KAIT-TGWLHPSINQFNPEPSVEFDTVANKKQQHEVNVAISNSFGFGGHNSVVAFSAFK 467 (468)
Q Consensus 410 ~~l~-~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~g~gG~n~~~vl~~~~ 467 (468)
..-. .+.. ........++..+||-|=+-..++|++.+
T Consensus 117 ~~~~~~~~~---------------------~~~~~~~~~~~~gfG~Glt~~~~llr~~~ 154 (156)
T d1u0ua2 117 KASLQNGCS---------------------TTGEGLEMGVLFGFGPGLTIETVVLKSVP 154 (156)
T ss_dssp HHHHHHTCS---------------------BSBTTBSEEEEEEEETTTEEEEEEEEECB
T ss_pred HhhhhccCC---------------------CcCCCCCEEEEEEECHHHhHHHHHHeeCc
Confidence 2221 1110 11122456777899998888888888764
|
| >d1u0ma1 c.95.1.2 (A:2-201) Putative polyketide synthase SCO1206 {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Chalcone synthase-like domain: Putative polyketide synthase SCO1206 species: Streptomyces coelicolor [TaxId: 1902]
Probab=86.08 E-value=0.93 Score=37.73 Aligned_cols=76 Identities=17% Similarity=0.039 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHcCCCCCCcCEEEEccCCCccCCHHHHHHHHHHhccCCCceeeecccccCccccchhHHHHHHHHHHHhc
Q 012221 335 VSSCIESSLEDAGVSPEEVNYINAHATSTLAGDLAEINAIKKVFKNTTGIKINATKSMIGHCLGAAGGLEAIATVKAITT 414 (468)
Q Consensus 335 ~~~~i~~al~~Agl~~~dId~v~~h~~gt~~~D~~E~~al~~~f~~~~~~~v~s~k~~~Gh~~~AsG~~~l~~~~~~l~~ 414 (468)
..++++++|+++|++|+|||+|... +.|...-+.=..-+...++....+... .+.+...++++..+-.+.-.|+.
T Consensus 79 a~~Aa~~aL~~ag~~~~dId~lI~~-s~t~~~~P~~aa~v~~~lg~~~~~~~~----~i~~~gC~g~~~al~~A~~~l~~ 153 (200)
T d1u0ma1 79 VPAVIQRALDDAELLATDIDVIIYV-SCTGFMMPSLTAWLINEMGFDSTTRQI----PIAQLGCAAGGAAINRAHDFCTA 153 (200)
T ss_dssp HHHHHHHHHHHHTCCGGGCSEEEEE-CSSSCCSSCHHHHHHHHTTCCTTCEEE----EECSCGGGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCChhhhheEEEe-ccCCCCcchhHHHHHHHHhcCCCeeEe----ccccchhhHHHHHHHHHHHHHHh
Confidence 4568999999999999999998754 334322221112233333322222211 11233445555555555566666
Q ss_pred C
Q 012221 415 G 415 (468)
Q Consensus 415 ~ 415 (468)
+
T Consensus 154 ~ 154 (200)
T d1u0ma1 154 Y 154 (200)
T ss_dssp S
T ss_pred C
Confidence 5
|
| >d1ub7a1 c.95.1.2 (A:2-173) Ketoacyl-ACP synthase III (FabH) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Chalcone synthase-like domain: Ketoacyl-ACP synthase III (FabH) species: Thermus thermophilus [TaxId: 274]
Probab=83.45 E-value=0.81 Score=37.07 Aligned_cols=75 Identities=15% Similarity=0.030 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHcCCCCCCcCEEEEccCCCccCCHHHHHHHHHHhccCCCceeeecccccCccccchhHHHHHHHHH-H
Q 012221 333 LGVSSCIESSLEDAGVSPEEVNYINAHATSTLAGDLAEINAIKKVFKNTTGIKINATKSMIGHCLGAAGGLEAIATVK-A 411 (468)
Q Consensus 333 ~~~~~~i~~al~~Agl~~~dId~v~~h~~gt~~~D~~E~~al~~~f~~~~~~~v~s~k~~~Gh~~~AsG~~~l~~~~~-~ 411 (468)
.-..++.+++|+++|++|+|||+|....+.-....+.-...+...++. +.. .+....+++|.+..+..+. .
T Consensus 51 ~ma~~Aa~~aL~~agi~~~dIdlli~~s~t~~~~~p~~a~~v~~~Lg~--~~~------~~di~~~C~g~~~al~~a~~~ 122 (172)
T d1ub7a1 51 DLAFKAVEDLLRRHPGALEGVDAVIVATNTPDALFPDTAALVQARFGL--KAF------AYDLLAGCPGWIYALAQAHAL 122 (172)
T ss_dssp HHHHHHHHHHHHHSTTTTTTEEEEEEECSSCSEEESCHHHHHHHHTTC--CCE------EEEEECSTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCcccccceEEEEecccccccccchHHHHHHHhcc--Ccc------ceeehhccccHHHHHHHHhhh
Confidence 345668999999999999999998866432222233344445555553 222 2233345555554444443 4
Q ss_pred HhcC
Q 012221 412 ITTG 415 (468)
Q Consensus 412 l~~~ 415 (468)
++.+
T Consensus 123 ~~~~ 126 (172)
T d1ub7a1 123 VEAG 126 (172)
T ss_dssp HHTT
T ss_pred hhcC
Confidence 4443
|