Citrus Sinensis ID: 012253
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 467 | 2.2.26 [Sep-21-2011] | |||||||
| P54873 | 461 | Hydroxymethylglutaryl-CoA | yes | no | 0.974 | 0.986 | 0.798 | 0.0 | |
| P54872 | 482 | Hydroxymethylglutaryl-CoA | yes | no | 0.950 | 0.921 | 0.511 | 1e-134 | |
| P54961 | 453 | Hydroxymethylglutaryl-CoA | N/A | no | 0.940 | 0.969 | 0.515 | 1e-129 | |
| P54869 | 508 | Hydroxymethylglutaryl-CoA | yes | no | 0.961 | 0.883 | 0.515 | 1e-129 | |
| P54868 | 508 | Hydroxymethylglutaryl-CoA | yes | no | 0.963 | 0.885 | 0.511 | 1e-129 | |
| P22791 | 508 | Hydroxymethylglutaryl-CoA | yes | no | 0.963 | 0.885 | 0.511 | 1e-128 | |
| Q5R7Z9 | 520 | Hydroxymethylglutaryl-CoA | no | no | 0.985 | 0.884 | 0.502 | 1e-128 | |
| Q01581 | 520 | Hydroxymethylglutaryl-CoA | no | no | 0.985 | 0.884 | 0.502 | 1e-128 | |
| O02734 | 508 | Hydroxymethylglutaryl-CoA | no | no | 0.959 | 0.881 | 0.509 | 1e-127 | |
| Q8JZK9 | 520 | Hydroxymethylglutaryl-CoA | no | no | 0.972 | 0.873 | 0.505 | 1e-127 |
| >sp|P54873|HMCS_ARATH Hydroxymethylglutaryl-CoA synthase OS=Arabidopsis thaliana GN=HMGS PE=1 SV=2 | Back alignment and function desciption |
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Score = 778 bits (2010), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 365/457 (79%), Positives = 402/457 (87%), Gaps = 2/457 (0%)
Query: 7 KNVGILALDIYFPPTCVLQEALEVHDGVSKGKYTVGLGQDCMAFCSEVEDVISMSLTVVT 66
KNVGILA+DIYFPPTCV QEALE HDG SKGKYT+GLGQDC+AFC+E+EDVISMS VT
Sbjct: 3 KNVGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQDCLAFCTELEDVISMSFNAVT 62
Query: 67 SLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTA 126
SL EKYKIDP QIGRLEVGSETVIDKSKSIKTFLMQ+FEK GNTD+EGVDSTNACYGGTA
Sbjct: 63 SLFEKYKIDPNQIGRLEVGSETVIDKSKSIKTFLMQLFEKCGNTDVEGVDSTNACYGGTA 122
Query: 127 ALFNCVNWVESASWDGRYGLVVCTDSAVYAEGPARPTGGAAAVAMLIGPDAPIAFESKLR 186
AL NCVNWVES SWDGRYGLV+CTDSAVYAEGPARPTGGAAA+AMLIGPDAPI FESKLR
Sbjct: 123 ALLNCVNWVESNSWDGRYGLVICTDSAVYAEGPARPTGGAAAIAMLIGPDAPIVFESKLR 182
Query: 187 GSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKYFCQKFEKLEGRQFSMLDVD 246
SHM+H YDFYKPNLASEYPVVDGKLSQTCYLMALDSCYK+ C KFEK+EG++FS+ D D
Sbjct: 183 ASHMAHVYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKHLCNKFEKIEGKEFSINDAD 242
Query: 247 YFVFHSPYNKLVQKSFARLFFNDFLRNASSVDEIAKEKLAPYSTLSDVESYQSRDLEKAS 306
Y VFHSPYNKLVQKSFARL +NDFLRNASS+DE AKEK PYS+L+ ESYQSRDLEK S
Sbjct: 243 YIVFHSPYNKLVQKSFARLLYNDFLRNASSIDEAAKEKFTPYSSLTLDESYQSRDLEKVS 302
Query: 307 QQVAKQLYDLKVQPSTLIPKQVGNMYTASLYAAFASLLHEKHSSLEGKRVIMFSYGSGLT 366
QQ+AK YD KVQP+TLIPK+VGNMYTASLYAAFASL+H+KH+ L GKRV+MFSYGSG T
Sbjct: 303 QQIAKPFYDAKVQPTTLIPKEVGNMYTASLYAAFASLIHKKHNDLAGKRVVMFSYGSGST 362
Query: 367 ATMFSLQLQEGHRPFSLSNIVKVMDVPGKLKLRHEFPPEKFVDIMKLMEHRYGAKDFVTS 426
ATMFSL+L + PFS+SNI VMDV GKLK RHE+ PEKFV+ MKLMEHRYGAKDFVT+
Sbjct: 363 ATMFSLRLNDNKPPFSISNIASVMDVGGKLKARHEYAPEKFVETMKLMEHRYGAKDFVTT 422
Query: 427 KDS--SLLSPGTCYLTEVDSMFRRFYAKKENTSNAAT 461
K+ LL+PGT YL EVDS++RRFY KK + A
Sbjct: 423 KEGIIDLLAPGTYYLKEVDSLYRRFYGKKGEDGSVAN 459
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This enzyme condenses acetyl-CoA with acetoacetyl-CoA to form HMG-CoA, which is the substrate for HMG-CoA reductase. Devoided of acetoacetyl-CoA thiolase (AACT) activity. Required for the development of both tapetosomes and elaioplasts in tapetal cells and for pollen viability during pollen tube elongation. Arabidopsis thaliana (taxid: 3702) EC: 2EC: .EC: 3EC: .EC: 3EC: .EC: 1EC: 0 |
| >sp|P54872|HMCSA_DICDI Hydroxymethylglutaryl-CoA synthase A OS=Dictyostelium discoideum GN=hgsA PE=1 SV=2 | Back alignment and function description |
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Score = 478 bits (1229), Expect = e-134, Method: Compositional matrix adjust.
Identities = 231/452 (51%), Positives = 312/452 (69%), Gaps = 8/452 (1%)
Query: 6 PKNVGILALDIYFPPTCVLQEALEVHDGVSKGKYTVGLGQDCMAFCSEVEDVISMSLTVV 65
P+N+GI +++YFP T V QE LE DGVS+GKYT+GLGQ MAFC + ED+ S+SL V
Sbjct: 4 PENIGIHGIEVYFPSTYVAQEDLEKFDGVSQGKYTLGLGQTNMAFCGDREDIYSLSLNAV 63
Query: 66 TSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGT 125
+L++K+ +DP IGRLEVG+ETVIDKSKS+KT LM +F K+GNT I+G+D+ NACYGGT
Sbjct: 64 NNLMDKFNVDPNSIGRLEVGTETVIDKSKSVKTVLMDLFAKHGNTSIDGIDTINACYGGT 123
Query: 126 AALFNCVNWVESASWDGRYGLVVCTDSAVYAEGPARPTGGAAAVAMLIGPDAPIAFESKL 185
+AL N + W+ES+ WDGR +VV D AVY +GPARPTGGA VAMLIGP+API FES L
Sbjct: 124 SALHNALQWMESSYWDGRNAIVVAGDIAVYEKGPARPTGGAGVVAMLIGPNAPITFESGL 183
Query: 186 RGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKYFCQKFEKLEGRQFSMLDV 245
RG HM + YDFYKP++ SEYP VDGKLS +CY A+D+CY + + FEK G+ FS+ V
Sbjct: 184 RGVHMENVYDFYKPDMDSEYPRVDGKLSISCYFRAIDNCYNRYAKAFEKKYGKSFSLDQV 243
Query: 246 DYFVFHSPYNKLVQKSFARLFFNDFLRNASSVDEIAKEKLAPYSTLSDVESYQSRDLEKA 305
D+ +FHSPYNKLVQKSF R+ +NDFL N ++ L Y + ++Y LEKA
Sbjct: 244 DFALFHSPYNKLVQKSFGRMLYNDFLNNP---NDSRYASLEAYKNVKPEDTYFDSVLEKA 300
Query: 306 SQQVAKQLYDLKVQPSTLIPKQVGNMYTASLYAAFASLLHEKHSSLEGKRVIMFSYGSGL 365
+ K Y KV P+TL+ KQ+GN Y S Y+ SLL EK + L GKRV+ FSYGSGL
Sbjct: 301 LSAITKNDYATKVAPTTLLAKQLGNTYCGSTYSGLLSLLDEKSNDLVGKRVLTFSYGSGL 360
Query: 366 TATMFSLQLQEGHRPFSLSNIVKVMDVPGKLKLRHEFPPEKFVDIMKLMEHRYGAKDFVT 425
A+ FS ++++ +++IV+ +D+ +L R PE F + + L E R+ K++V
Sbjct: 361 AASAFSFKVEK-----PINHIVEKVDLKNRLAKRVRVEPEIFTEKLSLRETRHNLKNYVP 415
Query: 426 SKDSSLLSPGTCYLTEVDSMFRRFYAKKENTS 457
S +++ + PG+ YL+ VD+ R Y + +TS
Sbjct: 416 SDETTNMFPGSFYLSSVDNAGIRKYDRTYSTS 447
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Condenses acetyl-CoA with acetoacetyl-CoA to form HMG-CoA, which is the substrate for HMG-CoA reductase. Dictyostelium discoideum (taxid: 44689) EC: 2 EC: . EC: 3 EC: . EC: 3 EC: . EC: 1 EC: 0 |
| >sp|P54961|HMCS1_BLAGE Hydroxymethylglutaryl-CoA synthase 1 OS=Blattella germanica GN=HMGCS-1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 463 bits (1192), Expect = e-129, Method: Compositional matrix adjust.
Identities = 235/456 (51%), Positives = 312/456 (68%), Gaps = 17/456 (3%)
Query: 6 PKNVGILALDIYFPPTCVLQEALEVHDGVSKGKYTVGLGQDCMAFCSEVEDVISMSLTVV 65
P +VGI+AL++ FP V Q LEV+D VS GKYTVGLGQ M FC++ ED+ S+ LTVV
Sbjct: 3 PSDVGIVALELIFPSQYVDQVDLEVYDNVSAGKYTVGLGQARMGFCTDREDINSLCLTVV 62
Query: 66 TSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGT 125
+ L+E++ I +QIGRLEVG+ET++DKSKS+KT LMQ+F+ NTDIEGVD+ NACYGGT
Sbjct: 63 SRLMERWSIPYSQIGRLEVGTETLLDKSKSVKTVLMQLFKD--NTDIEGVDTVNACYGGT 120
Query: 126 AALFNCVNWVESASWDGRYGLVVCTDSAVYAEGPARPTGGAAAVAMLIGPDAPIAFESKL 185
+ALFN ++WVES+SWDGRY LVV D AVYA+G ARPTGGA AVAML+G +AP+ F+ +
Sbjct: 121 SALFNAISWVESSSWDGRYALVVAGDIAVYAKGSARPTGGAGAVAMLVGANAPLVFDRGV 180
Query: 186 RGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKYFCQKFEKLEGRQFSMLDV 245
R SHM HAYDFYKP+L+S YP VDGKLS CYL ALD CY+ +C K +K G +F + +
Sbjct: 181 RSSHMQHAYDFYKPDLSSLYPTVDGKLSIQCYLSALDHCYQLYCSKIQKQLGEKFDIERL 240
Query: 246 DYFVFHSPYNKLVQKSFARLFFNDFLRNASSVDEIAKEKLAPYSTLSDV------ESYQS 299
D +FH+PY KLVQKS ARL NDF+R + +E+ YS+L + ++Y
Sbjct: 241 DAVLFHAPYCKLVQKSLARLVLNDFVRASE------EERTTKYSSLEALKGVKLEDTYFD 294
Query: 300 RDLEKASQQVAKQLYDLKVQPSTLIPKQVGNMYTASLYAAFASLLHEKHSS-LEGKRVIM 358
R++EKA +K +++ K +PS L+ QVGNMYT SLY SLL K + L GKRV +
Sbjct: 295 REVEKAVMTYSKNMFEEKTKPSLLLANQVGNMYTPSLYGGLVSLLVSKSAQELAGKRVAL 354
Query: 359 FSYGSGLTATMFSLQL-QEGHRPFSLSNIVKVMD-VPGKLKLRHEFPPEKFVDIMKLMEH 416
FSYGSGL ++MFSL++ + SL +V + + +L LRH+ PE+F M+ EH
Sbjct: 355 FSYGSGLASSMFSLRISSDASAKSSLQRLVSNLSHIKPQLDLRHKVSPEEFAQTMETREH 414
Query: 417 RYGAKDFVTSKDSSLLSPGTCYLTEVDSMFRRFYAK 452
+ + +L PGT YL VDS++RR Y +
Sbjct: 415 NHHKAPYTPEGSIDVLFPGTWYLESVDSLYRRSYKQ 450
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This enzyme condenses acetyl-CoA with acetoacetyl-CoA to form HMG-CoA, which is the substrate for HMG-CoA reductase. Blattella germanica (taxid: 6973) EC: 2 EC: . EC: 3 EC: . EC: 3 EC: . EC: 1 EC: 0 |
| >sp|P54869|HMCS2_MOUSE Hydroxymethylglutaryl-CoA synthase, mitochondrial OS=Mus musculus GN=Hmgcs2 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 461 bits (1185), Expect = e-129, Method: Compositional matrix adjust.
Identities = 236/458 (51%), Positives = 303/458 (66%), Gaps = 9/458 (1%)
Query: 3 SWHPKNVGILALDIYFPPTCVLQEALEVHDGVSKGKYTVGLGQDCMAFCSEVEDVISMSL 62
+W PK+VGILAL++YFP V Q LE + V GKYTVGLGQ M FCS ED+ S+ L
Sbjct: 49 TW-PKDVGILALEVYFPAQYVDQTDLEKFNNVEAGKYTVGLGQTRMGFCSVQEDINSLCL 107
Query: 63 TVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACY 122
TVV L+E+ K+ +GRLEVG+ET+IDKSK++KT LM++F+ GNTDIEG+D+TNACY
Sbjct: 108 TVVQRLMERTKLPWDAVGRLEVGTETIIDKSKAVKTVLMELFQDSGNTDIEGIDTTNACY 167
Query: 123 GGTAALFNCVNWVESASWDGRYGLVVCTDSAVYAEGPARPTGGAAAVAMLIGPDAPIAFE 182
GGTA+LFN NW+ES+ WDGRY LVVC D AVY G ARPTGGA AVAMLIGP AP+ E
Sbjct: 168 GGTASLFNAANWMESSYWDGRYALVVCGDIAVYPSGNARPTGGAGAVAMLIGPKAPLVLE 227
Query: 183 SKLRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKYFCQKFEKL-----EG 237
LRG+HM +AYDFYKPNLASEYP+VDGKLS CYL ALD CY + +K +
Sbjct: 228 QGLRGTHMENAYDFYKPNLASEYPLVDGKLSIQCYLRALDRCYAAYRKKIQNQWKQAGNN 287
Query: 238 RQFSMLDVDYFVFHSPYNKLVQKSFARLFFNDFLRNASSVDEIAKEKLAPYSTLSDVESY 297
+ F++ DV Y +FH+P+ K+VQKS ARL FNDFL ++S + L + L E+Y
Sbjct: 288 QPFTLDDVQYMIFHTPFCKMVQKSLARLMFNDFLSSSSDKQNNLYKGLEAFRGLKLEETY 347
Query: 298 QSRDLEKASQQVAKQLYDLKVQPSTLIPKQVGNMYTASLYAAFASLL-HEKHSSLEGKRV 356
++D++KA + + +++ K + S + GNMYT+SLY ASLL H L G R+
Sbjct: 348 TNKDVDKALLKASLDMFNQKTKASLYLSTNNGNMYTSSLYGCLASLLSHHSAQELAGSRI 407
Query: 357 IMFSYGSGLTATMFSLQLQEGHRPFS-LSNIV-KVMDVPGKLKLRHEFPPEKFVDIMKLM 414
FSYGSGL A+ FS ++ + P S L +V V D+P +L R PE+F +IM
Sbjct: 408 GAFSYGSGLAASFFSFRVSKDASPGSPLEKLVSSVSDLPKRLDSRRRMSPEEFTEIMNQR 467
Query: 415 EHRYGAKDFVTSKDSSLLSPGTCYLTEVDSMFRRFYAK 452
E Y +F D+S L PGT YL VD M RR YA+
Sbjct: 468 EQFYHKVNFSPPGDTSNLFPGTWYLERVDEMHRRKYAR 505
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This enzyme condenses acetyl-CoA with acetoacetyl-CoA to form HMG-CoA, which is the substrate for HMG-CoA reductase. Mus musculus (taxid: 10090) EC: 2 EC: . EC: 3 EC: . EC: 3 EC: . EC: 1 EC: 0 |
| >sp|P54868|HMCS2_HUMAN Hydroxymethylglutaryl-CoA synthase, mitochondrial OS=Homo sapiens GN=HMGCS2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 460 bits (1184), Expect = e-129, Method: Compositional matrix adjust.
Identities = 235/459 (51%), Positives = 306/459 (66%), Gaps = 9/459 (1%)
Query: 3 SWHPKNVGILALDIYFPPTCVLQEALEVHDGVSKGKYTVGLGQDCMAFCSEVEDVISMSL 62
+W PK+VGILAL++YFP V Q LE ++ V GKYTVGLGQ M FCS ED+ S+ L
Sbjct: 49 TW-PKDVGILALEVYFPAQYVDQTDLEKYNNVEAGKYTVGLGQTRMGFCSVQEDINSLCL 107
Query: 63 TVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACY 122
TVV L+E+ ++ +GRLEVG+ET+IDKSK++KT LM++F+ GNTDIEG+D+TNACY
Sbjct: 108 TVVQRLMERIQLPWDSVGRLEVGTETIIDKSKAVKTVLMELFQDSGNTDIEGIDTTNACY 167
Query: 123 GGTAALFNCVNWVESASWDGRYGLVVCTDSAVYAEGPARPTGGAAAVAMLIGPDAPIAFE 182
GGTA+LFN NW+ES+SWDGRY +VVC D AVY G ARPTGGA AVAMLIGP AP+A E
Sbjct: 168 GGTASLFNAANWMESSSWDGRYAMVVCGDIAVYPSGNARPTGGAGAVAMLIGPKAPLALE 227
Query: 183 SKLRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKYFCQKFE---KLEG-- 237
LRG+HM + YDFYKPNLASEYP+VDGKLS CYL ALD CY + +K + K G
Sbjct: 228 RGLRGTHMENVYDFYKPNLASEYPIVDGKLSIQCYLRALDRCYTSYRKKIQNQWKQAGSD 287
Query: 238 RQFSMLDVDYFVFHSPYNKLVQKSFARLFFNDFLRNASSVDEIAKEKLAPYSTLSDVESY 297
R F++ D+ Y +FH+P+ K+VQKS ARL FNDFL +S + L + L ++Y
Sbjct: 288 RPFTLDDLQYMIFHTPFCKMVQKSLARLMFNDFLSASSDTQTSLYKGLEAFGGLKLEDTY 347
Query: 298 QSRDLEKASQQVAKQLYDLKVQPSTLIPKQVGNMYTASLYAAFASLL-HEKHSSLEGKRV 356
++DL+KA + ++ ++D K + S + GNMYT+SLY ASLL H L G R+
Sbjct: 348 TNKDLDKALLKASQDMFDKKTKASLYLSTHNGNMYTSSLYGCLASLLSHHSAQELAGSRI 407
Query: 357 IMFSYGSGLTATMFSLQLQEGHRPFS-LSNIV-KVMDVPGKLKLRHEFPPEKFVDIMKLM 414
FSYGSGL A+ FS ++ + P S L +V D+P +L R PE+F +IM
Sbjct: 408 GAFSYGSGLAASFFSFRVSQDAAPGSPLDKLVSSTSDLPKRLASRKCVSPEEFTEIMNQR 467
Query: 415 EHRYGAKDFVTSKDSSLLSPGTCYLTEVDSMFRRFYAKK 453
E Y +F D++ L PGT YL VD RR YA++
Sbjct: 468 EQFYHKVNFSPPGDTNSLFPGTWYLERVDEQHRRKYARR 506
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This enzyme condenses acetyl-CoA with acetoacetyl-CoA to form HMG-CoA, which is the substrate for HMG-CoA reductase. Homo sapiens (taxid: 9606) EC: 2 EC: . EC: 3 EC: . EC: 3 EC: . EC: 1 EC: 0 |
| >sp|P22791|HMCS2_RAT Hydroxymethylglutaryl-CoA synthase, mitochondrial OS=Rattus norvegicus GN=Hmgcs2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 459 bits (1182), Expect = e-128, Method: Compositional matrix adjust.
Identities = 235/459 (51%), Positives = 303/459 (66%), Gaps = 9/459 (1%)
Query: 3 SWHPKNVGILALDIYFPPTCVLQEALEVHDGVSKGKYTVGLGQDCMAFCSEVEDVISMSL 62
+W PK+VGILAL++YFP V Q LE + V GKYTVGLGQ M FCS ED+ S+ L
Sbjct: 49 TW-PKDVGILALEVYFPAQYVDQTDLEKFNNVEAGKYTVGLGQTRMGFCSVQEDINSLCL 107
Query: 63 TVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACY 122
TVV L+E+ K+ +GRLEVG+ET+IDKSK++KT LM++F+ GNTDIEG+D+TNACY
Sbjct: 108 TVVQRLMERTKLPWDAVGRLEVGTETIIDKSKAVKTVLMELFQDSGNTDIEGIDTTNACY 167
Query: 123 GGTAALFNCVNWVESASWDGRYGLVVCTDSAVYAEGPARPTGGAAAVAMLIGPDAPIAFE 182
GGTA+LFN NW+ES+ WDGRY LVVC D AVY G RPTGGA AVAMLIGP AP+ E
Sbjct: 168 GGTASLFNAANWMESSYWDGRYALVVCGDIAVYPSGNPRPTGGAGAVAMLIGPKAPLVLE 227
Query: 183 SKLRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKYFCQKFEKL-----EG 237
LRG+HM +AYDFYKPNLASEYP+VDGKLS CYL ALD CY + +K +
Sbjct: 228 QGLRGTHMENAYDFYKPNLASEYPLVDGKLSIQCYLRALDRCYAAYRRKIQNQWKQAGNN 287
Query: 238 RQFSMLDVDYFVFHSPYNKLVQKSFARLFFNDFLRNASSVDEIAKEKLAPYSTLSDVESY 297
+ F++ DV Y +FH+P+ K+VQKS ARL FNDFL ++S + L + L E+Y
Sbjct: 288 QPFTLDDVQYMIFHTPFCKMVQKSLARLMFNDFLSSSSDKQNNLYKGLEAFKGLKLEETY 347
Query: 298 QSRDLEKASQQVAKQLYDLKVQPSTLIPKQVGNMYTASLYAAFASLL-HEKHSSLEGKRV 356
++D++KA + + +++ K + S + GNMYT+SLY ASLL H L G R+
Sbjct: 348 TNKDVDKALLKASLDMFNKKTKASLYLSTNNGNMYTSSLYGCLASLLSHHSAQELAGSRI 407
Query: 357 IMFSYGSGLTATMFSLQLQEGHRPFS-LSNIV-KVMDVPGKLKLRHEFPPEKFVDIMKLM 414
FSYGSGL A+ FS ++ + P S L +V V D+P +L R PE+F +IM
Sbjct: 408 GAFSYGSGLAASFFSFRVSKDASPGSPLEKLVSSVSDLPKRLDSRRRMSPEEFTEIMNQR 467
Query: 415 EHRYGAKDFVTSKDSSLLSPGTCYLTEVDSMFRRFYAKK 453
E Y +F D+S L PGT YL VD M RR YA++
Sbjct: 468 EQFYHKVNFSPPGDTSNLFPGTWYLERVDEMHRRKYARR 506
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This enzyme condenses acetyl-CoA with acetoacetyl-CoA to form HMG-CoA, which is the substrate for HMG-CoA reductase. Rattus norvegicus (taxid: 10116) EC: 2 EC: . EC: 3 EC: . EC: 3 EC: . EC: 1 EC: 0 |
| >sp|Q5R7Z9|HMCS1_PONAB Hydroxymethylglutaryl-CoA synthase, cytoplasmic OS=Pongo abelii GN=HMGCS1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 458 bits (1179), Expect = e-128, Method: Compositional matrix adjust.
Identities = 236/470 (50%), Positives = 314/470 (66%), Gaps = 10/470 (2%)
Query: 4 WHPKNVGILALDIYFPPTCVLQEALEVHDGVSKGKYTVGLGQDCMAFCSEVEDVISMSLT 63
W PK+VGI+AL+IYFP V Q LE +DGV+ GKYT+GLGQ M FC++ ED+ S+ +T
Sbjct: 13 W-PKDVGIVALEIYFPSQYVDQAELEKYDGVAAGKYTIGLGQAKMGFCTDREDINSLCMT 71
Query: 64 VVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYG 123
VV +L+E+ + IGRLEVG+ET+IDKSKS+KT LMQ+FE+ GNTDIEG+D+TNACYG
Sbjct: 72 VVQNLMERNNLSYDCIGRLEVGTETIIDKSKSVKTNLMQLFEESGNTDIEGIDTTNACYG 131
Query: 124 GTAALFNCVNWVESASWDGRYGLVVCTDSAVYAEGPARPTGGAAAVAMLIGPDAPIAFES 183
GTAA+FN VNW+ES+SWDGRY LVV D AVYA G ARPTGG AVA+LIGP+AP+ FE
Sbjct: 132 GTAAVFNAVNWIESSSWDGRYALVVAGDIAVYATGNARPTGGVGAVALLIGPNAPLIFER 191
Query: 184 KLRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKYFCQKFE---KLEG--R 238
LRG+HM HAYDFYKP++ SEYP+VDGKLS CYL ALD CY +C+K + EG +
Sbjct: 192 GLRGTHMQHAYDFYKPDMLSEYPIVDGKLSIQCYLSALDRCYSVYCKKIRAQWQKEGNDK 251
Query: 239 QFSMLDVDYFVFHSPYNKLVQKSFARLFFNDFLRNASSVDEIAKEKLAPYSTLSDVESYQ 298
F++ D + +FHSPY KLVQKS AR+ NDFL + + L + + ++Y
Sbjct: 252 DFTLNDFGFMIFHSPYCKLVQKSLARMLLNDFLNDQNRDKNSIYSGLEAFGDVKLEDTYF 311
Query: 299 SRDLEKASQQVAKQLYDLKVQPSTLIPKQVGNMYTASLYAAFASLLHE-KHSSLEGKRVI 357
RD+EKA + + +L+ K + S L+ Q GNMYT+S+Y + AS+L + L GKR+
Sbjct: 312 DRDVEKAFMKASSELFSQKTKASLLVSNQNGNMYTSSVYGSLASVLAQYSPQQLAGKRIG 371
Query: 358 MFSYGSGLTATMFSLQLQEGHRPFS-LSNIVKVM-DVPGKLKLRHEFPPEKFVDIMKLME 415
+FSYGSGL AT++SL++ + P S L I + D+ +L R P+ F + MKL E
Sbjct: 372 VFSYGSGLAATLYSLKVTQDATPGSALDKITASLCDLKSRLDSRTGVAPDVFAENMKLRE 431
Query: 416 HRYGAKDFVTSKDSSLLSPGTCYLTEVDSMFRRFYAKKENTSNAATCENG 465
+ +++ L GT YL VD RR YA++ T N T + G
Sbjct: 432 DTHHLVNYIPQGSIDSLFEGTWYLVRVDEKHRRTYARRP-TPNDDTLDEG 480
|
This enzyme condenses acetyl-CoA with acetoacetyl-CoA to form HMG-CoA, which is the substrate for HMG-CoA reductase. Pongo abelii (taxid: 9601) EC: 2 EC: . EC: 3 EC: . EC: 3 EC: . EC: 1 EC: 0 |
| >sp|Q01581|HMCS1_HUMAN Hydroxymethylglutaryl-CoA synthase, cytoplasmic OS=Homo sapiens GN=HMGCS1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 457 bits (1177), Expect = e-128, Method: Compositional matrix adjust.
Identities = 236/470 (50%), Positives = 313/470 (66%), Gaps = 10/470 (2%)
Query: 4 WHPKNVGILALDIYFPPTCVLQEALEVHDGVSKGKYTVGLGQDCMAFCSEVEDVISMSLT 63
W PK+VGI+AL+IYFP V Q LE +DGV GKYT+GLGQ M FC++ ED+ S+ +T
Sbjct: 13 W-PKDVGIVALEIYFPSQYVDQAELEKYDGVDAGKYTIGLGQAKMGFCTDREDINSLCMT 71
Query: 64 VVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYG 123
VV +L+E+ + IGRLEVG+ET+IDKSKS+KT LMQ+FE+ GNTDIEG+D+TNACYG
Sbjct: 72 VVQNLMERNNLSYDCIGRLEVGTETIIDKSKSVKTNLMQLFEESGNTDIEGIDTTNACYG 131
Query: 124 GTAALFNCVNWVESASWDGRYGLVVCTDSAVYAEGPARPTGGAAAVAMLIGPDAPIAFES 183
GTAA+FN VNW+ES+SWDGRY LVV D AVYA G ARPTGG AVA+LIGP+AP+ FE
Sbjct: 132 GTAAVFNAVNWIESSSWDGRYALVVAGDIAVYATGNARPTGGVGAVALLIGPNAPLIFER 191
Query: 184 KLRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKYFCQKFE---KLEG--R 238
LRG+HM HAYDFYKP++ SEYP+VDGKLS CYL ALD CY +C+K + EG +
Sbjct: 192 GLRGTHMQHAYDFYKPDMLSEYPIVDGKLSIQCYLSALDRCYSVYCKKIHAQWQKEGNDK 251
Query: 239 QFSMLDVDYFVFHSPYNKLVQKSFARLFFNDFLRNASSVDEIAKEKLAPYSTLSDVESYQ 298
F++ D + +FHSPY KLVQKS AR+ NDFL + + L + + ++Y
Sbjct: 252 DFTLNDFGFMIFHSPYCKLVQKSLARMLLNDFLNDQNRDKNSIYSGLEAFGDVKLEDTYF 311
Query: 299 SRDLEKASQQVAKQLYDLKVQPSTLIPKQVGNMYTASLYAAFASLLHE-KHSSLEGKRVI 357
RD+EKA + + +L+ K + S L+ Q GNMYT+S+Y + AS+L + L GKR+
Sbjct: 312 DRDVEKAFMKASSELFSQKTKASLLVSNQNGNMYTSSVYGSLASVLAQYSPQQLAGKRIG 371
Query: 358 MFSYGSGLTATMFSLQLQEGHRPFS-LSNIVKVM-DVPGKLKLRHEFPPEKFVDIMKLME 415
+FSYGSGL AT++SL++ + P S L I + D+ +L R P+ F + MKL E
Sbjct: 372 VFSYGSGLAATLYSLKVTQDATPGSALDKITASLCDLKSRLDSRTGVAPDVFAENMKLRE 431
Query: 416 HRYGAKDFVTSKDSSLLSPGTCYLTEVDSMFRRFYAKKENTSNAATCENG 465
+ +++ L GT YL VD RR YA++ T N T + G
Sbjct: 432 DTHHLVNYIPQGSIDSLFEGTWYLVRVDEKHRRTYARRP-TPNDDTLDEG 480
|
This enzyme condenses acetyl-CoA with acetoacetyl-CoA to form HMG-CoA, which is the substrate for HMG-CoA reductase. Homo sapiens (taxid: 9606) EC: 2 EC: . EC: 3 EC: . EC: 3 EC: . EC: 1 EC: 0 |
| >sp|O02734|HMCS2_PIG Hydroxymethylglutaryl-CoA synthase, mitochondrial OS=Sus scrofa GN=HMGCS2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 457 bits (1175), Expect = e-127, Method: Compositional matrix adjust.
Identities = 234/459 (50%), Positives = 306/459 (66%), Gaps = 11/459 (2%)
Query: 3 SWHPKNVGILALDIYFPPTCVLQEALEVHDGVSKGKYTVGLGQDCMAFCSEVEDVISMSL 62
+W PK+VGILAL++YFP V Q LE D V G+YTVGLGQ M FCS ED+ S+ L
Sbjct: 49 TW-PKDVGILALEVYFPAQYVDQTDLEKFDNVEAGRYTVGLGQTHMGFCSVQEDINSLCL 107
Query: 63 TVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACY 122
TVV L+E+ ++ +G LEVG+ET+IDKSKS+KT LM++F+ GNTDIEG+D+TNACY
Sbjct: 108 TVVQRLMERTQLPWDSVGWLEVGTETIIDKSKSVKTVLMELFQDSGNTDIEGIDTTNACY 167
Query: 123 GGTAALFNCVNWVESASWDGRYGLVVCTDSAVYAEGPARPTGGAAAVAMLIGPDAPIAFE 182
GGTA+LFN NWVES++WDGRY +VVC D AVY G +RPTGGA AVAML+GP+AP+A E
Sbjct: 168 GGTASLFNAANWVESSAWDGRYAVVVCGDIAVYPRGNSRPTGGAGAVAMLVGPEAPLALE 227
Query: 183 SKLRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKYFCQKFEK------LE 236
LRG+HM +AYDFYKPN SEYP+VDGKLS CYL ALD CY + QK EK +E
Sbjct: 228 RGLRGTHMENAYDFYKPNATSEYPLVDGKLSIQCYLRALDRCYTLYRQKIEKQWKQAGIE 287
Query: 237 GRQFSMLDVDYFVFHSPYNKLVQKSFARLFFNDFLRNASSVDEIAKEKLAPYSTLSDVES 296
R F++ D+ + +FH+P+ KLVQKS ARL F+DFL S + L + ++
Sbjct: 288 -RHFTLDDLQFMIFHTPFCKLVQKSLARLMFSDFLLADSDTQSSLYKGLEAFRGQKLEDT 346
Query: 297 YQSRDLEKASQQVAKQLYDLKVQPSTLIPKQVGNMYTASLYAAFASLLHE-KHSSLEGKR 355
Y ++D+EKA Q+ + L++ K +PS + GNMYT+SLY ASLL + L G R
Sbjct: 347 YANKDIEKAFQKASLDLFNKKTKPSLYLSLHNGNMYTSSLYGCLASLLSQCSAQDLAGSR 406
Query: 356 VIMFSYGSGLTATMFSLQLQEGHRPFS-LSNIV-KVMDVPGKLKLRHEFPPEKFVDIMKL 413
+ FSYGSGL A+ +SL++ + P S L +V V D+P +L R PE+F +IM
Sbjct: 407 IGAFSYGSGLAASFYSLRVSQDASPGSPLEKLVSSVSDLPERLASRKRVSPEEFTEIMNQ 466
Query: 414 MEHRYGAKDFVTSKDSSLLSPGTCYLTEVDSMFRRFYAK 452
E Y +F D + L PGT YL VD ++RR YA+
Sbjct: 467 REQYYHKVNFTPPGDPNSLFPGTWYLERVDELYRRKYAR 505
|
This enzyme condenses acetyl-CoA with acetoacetyl-CoA to form HMG-CoA, which is the substrate for HMG-CoA reductase. Sus scrofa (taxid: 9823) EC: 2 EC: . EC: 3 EC: . EC: 3 EC: . EC: 1 EC: 0 |
| >sp|Q8JZK9|HMCS1_MOUSE Hydroxymethylglutaryl-CoA synthase, cytoplasmic OS=Mus musculus GN=Hmgcs1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 454 bits (1168), Expect = e-127, Method: Compositional matrix adjust.
Identities = 234/463 (50%), Positives = 312/463 (67%), Gaps = 9/463 (1%)
Query: 4 WHPKNVGILALDIYFPPTCVLQEALEVHDGVSKGKYTVGLGQDCMAFCSEVEDVISMSLT 63
W PK+VGI+AL+IYFP V Q LE +DGV GKYT+GLGQ M FC++ ED+ S+ LT
Sbjct: 13 W-PKDVGIVALEIYFPSQYVDQAELEKYDGVDAGKYTIGLGQARMGFCTDREDINSLCLT 71
Query: 64 VVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYG 123
VV L+E++ + IGRLEVG+ET+IDKSKS+K+ LMQ+FE+ GNTDIEG+D+TNACYG
Sbjct: 72 VVQKLMERHSLSYDCIGRLEVGTETIIDKSKSVKSNLMQLFEESGNTDIEGIDTTNACYG 131
Query: 124 GTAALFNCVNWVESASWDGRYGLVVCTDSAVYAEGPARPTGGAAAVAMLIGPDAPIAFES 183
GTAA+FN VNWVES+SWDGRY LVV D A+YA G ARPTGG AVA+LIGP+AP+ F+
Sbjct: 132 GTAAVFNAVNWVESSSWDGRYALVVAGDIAIYATGNARPTGGVGAVALLIGPNAPLIFDR 191
Query: 184 KLRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKYFCQKFE---KLEG--R 238
LRG+HM HAYDFYKP++ SEYPVVDGKLS CYL ALD CY + +K + EG +
Sbjct: 192 GLRGTHMQHAYDFYKPDMLSEYPVVDGKLSIQCYLSALDRCYSVYRKKIRAQWQKEGKDK 251
Query: 239 QFSMLDVDYFVFHSPYNKLVQKSFARLFFNDFLRNASSVDEIAKEKLAPYSTLSDVESYQ 298
F++ D + +FHSPY KLVQKS AR+F NDFL + + L + + ++Y
Sbjct: 252 DFTLNDFGFMIFHSPYCKLVQKSLARMFLNDFLNDQNRDKNSIYSGLEAFGDVKLEDTYF 311
Query: 299 SRDLEKASQQVAKQLYDLKVQPSTLIPKQVGNMYTASLYAAFASLLHE-KHSSLEGKRVI 357
RD+EKA + + +L++ K + S L+ Q GNMYT+S+Y + AS+L + L GKRV
Sbjct: 312 DRDVEKAFMKASSELFNQKTKASLLVSNQNGNMYTSSVYGSLASVLAQYSPQQLAGKRVG 371
Query: 358 MFSYGSGLTATMFSLQLQEGHRPFS-LSNIVKVM-DVPGKLKLRHEFPPEKFVDIMKLME 415
+FSYGSGL AT++SL++ + P S L I + D+ +L R P+ F + MKL E
Sbjct: 372 VFSYGSGLAATLYSLKVTQDATPGSALDKITASLCDLKSRLDSRTCVAPDVFAENMKLRE 431
Query: 416 HRYGAKDFVTSKDSSLLSPGTCYLTEVDSMFRRFYAKKENTSN 458
+ +++ L GT YL VD RR YA++ T++
Sbjct: 432 DTHHLANYIPQCSIDSLFEGTWYLVRVDEKHRRTYARRPFTND 474
|
This enzyme condenses acetyl-CoA with acetoacetyl-CoA to form HMG-CoA, which is the substrate for HMG-CoA reductase. Mus musculus (taxid: 10090) EC: 2 EC: . EC: 3 EC: . EC: 3 EC: . EC: 1 EC: 0 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 467 | ||||||
| 225426749 | 464 | PREDICTED: hydroxymethylglutaryl-CoA syn | 0.978 | 0.984 | 0.856 | 0.0 | |
| 356497206 | 471 | PREDICTED: hydroxymethylglutaryl-CoA syn | 0.982 | 0.974 | 0.845 | 0.0 | |
| 356539911 | 475 | PREDICTED: hydroxymethylglutaryl-CoA syn | 0.982 | 0.966 | 0.845 | 0.0 | |
| 42795470 | 464 | HMG-CoA synthase 2 [Hevea brasiliensis] | 0.976 | 0.982 | 0.851 | 0.0 | |
| 164604966 | 464 | hydroxymethylglutaryl-CoA synthase [Heve | 0.976 | 0.982 | 0.849 | 0.0 | |
| 255537251 | 464 | hydroxymethylglutaryl-CoA synthase, puta | 0.976 | 0.982 | 0.849 | 0.0 | |
| 378587536 | 467 | 3-hydroxy-3-methylglutaryl-CoA synthase | 0.978 | 0.978 | 0.834 | 0.0 | |
| 16417956 | 464 | hydroxymethylglutaryl coenzyme A synthas | 0.976 | 0.982 | 0.845 | 0.0 | |
| 357481763 | 471 | Hydroxymethylglutaryl-CoA synthase [Medi | 0.985 | 0.976 | 0.836 | 0.0 | |
| 356563228 | 460 | PREDICTED: hydroxymethylglutaryl-CoA syn | 0.978 | 0.993 | 0.847 | 0.0 |
| >gi|225426749|ref|XP_002282434.1| PREDICTED: hydroxymethylglutaryl-CoA synthase [Vitis vinifera] gi|297742614|emb|CBI34763.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 828 bits (2138), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 394/460 (85%), Positives = 421/460 (91%), Gaps = 3/460 (0%)
Query: 7 KNVGILALDIYFPPTCVLQEALEVHDGVSKGKYTVGLGQDCMAFCSEVEDVISMSLTVVT 66
KNVGILA+DIYFPPTCV QEALEVHDG SKGKYT+GLGQDCMAFCSEVEDVISMSLTVVT
Sbjct: 3 KNVGILAMDIYFPPTCVQQEALEVHDGASKGKYTIGLGQDCMAFCSEVEDVISMSLTVVT 62
Query: 67 SLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTA 126
SLLEKY IDP QIGRLEVGSETVIDKSKSIKTFLMQIFE+ GN DIEGVDS+NACYGGTA
Sbjct: 63 SLLEKYGIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEECGNNDIEGVDSSNACYGGTA 122
Query: 127 ALFNCVNWVESASWDGRYGLVVCTDSAVYAEGPARPTGGAAAVAMLIGPDAPIAFESKLR 186
ALFNCVNWVES+SWDGRYGLVVCTDSAVYAEGPARPTGGAAA+AML+GPDAPIAFESKLR
Sbjct: 123 ALFNCVNWVESSSWDGRYGLVVCTDSAVYAEGPARPTGGAAAIAMLVGPDAPIAFESKLR 182
Query: 187 GSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKYFCQKFEKLEGRQFSMLDVD 246
GSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYK C K+EKLEG+QFS+ D D
Sbjct: 183 GSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKLLCSKYEKLEGKQFSIADAD 242
Query: 247 YFVFHSPYNKLVQKSFARLFFNDFLRNASSVDEIAKEKLAPYSTLSDVESYQSRDLEKAS 306
YFVFHSPYNKLVQKSFARL FND +RNASSVDE K+KL P+S+LS ESYQ+RDLEKAS
Sbjct: 243 YFVFHSPYNKLVQKSFARLVFNDVVRNASSVDEAGKQKLEPFSSLSGDESYQNRDLEKAS 302
Query: 307 QQVAKQLYDLKVQPSTLIPKQVGNMYTASLYAAFASLLHEKHSSLEGKRVIMFSYGSGLT 366
QQVAK LYD KVQPSTL+PKQVGNMYTASLYAAF S+LH KHS L GKRV+MFSYGSGLT
Sbjct: 303 QQVAKPLYDAKVQPSTLLPKQVGNMYTASLYAAFVSVLHNKHSELSGKRVVMFSYGSGLT 362
Query: 367 ATMFSLQLQEGHRPFSLSNIVKVMDVPGKLKLRHEFPPEKFVDIMKLMEHRYGAKDFVTS 426
ATMFS QL++G PFSLSNI VMDV GKLK RHEFPPEKFV+I+KLMEHRYGAKDFVTS
Sbjct: 363 ATMFSFQLRDGQHPFSLSNIATVMDVAGKLKARHEFPPEKFVEILKLMEHRYGAKDFVTS 422
Query: 427 KDSSLLSPGTCYLTEVDSMFRRFYAKKENTSNAATCENGA 466
KD SLL PGT YLTEVDSM+RRFY+KK + + TCENG+
Sbjct: 423 KDCSLLPPGTHYLTEVDSMYRRFYSKK---AGSCTCENGS 459
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356497206|ref|XP_003517453.1| PREDICTED: hydroxymethylglutaryl-CoA synthase-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 824 bits (2128), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 388/459 (84%), Positives = 421/459 (91%)
Query: 7 KNVGILALDIYFPPTCVLQEALEVHDGVSKGKYTVGLGQDCMAFCSEVEDVISMSLTVVT 66
KNVGILA+DIYFPP CV QEALE HDG SKGKYT+GLGQDCM+FC+EVEDVISMSLTVVT
Sbjct: 3 KNVGILAIDIYFPPACVQQEALETHDGASKGKYTIGLGQDCMSFCTEVEDVISMSLTVVT 62
Query: 67 SLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTA 126
SLLEKY IDP QIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTA
Sbjct: 63 SLLEKYGIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTA 122
Query: 127 ALFNCVNWVESASWDGRYGLVVCTDSAVYAEGPARPTGGAAAVAMLIGPDAPIAFESKLR 186
ALFNCVNWVES SWDGRYGLVVCTDSAVYAEGPARPTGGAAA+AMLIGPDAPI+FESKLR
Sbjct: 123 ALFNCVNWVESNSWDGRYGLVVCTDSAVYAEGPARPTGGAAAIAMLIGPDAPISFESKLR 182
Query: 187 GSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKYFCQKFEKLEGRQFSMLDVD 246
GSHMSH YDFYKPNLASEYPVVDGKLSQTCYLMA+DSCYK FC KF+K +G+QFS+ D +
Sbjct: 183 GSHMSHVYDFYKPNLASEYPVVDGKLSQTCYLMAVDSCYKNFCHKFQKFQGKQFSLFDAE 242
Query: 247 YFVFHSPYNKLVQKSFARLFFNDFLRNASSVDEIAKEKLAPYSTLSDVESYQSRDLEKAS 306
YFVFHSPYNKLVQKSFARLFFNDFL N+SS DE+AKEKL P++TLS ESYQSRDLEKAS
Sbjct: 243 YFVFHSPYNKLVQKSFARLFFNDFLMNSSSADEVAKEKLGPFATLSGDESYQSRDLEKAS 302
Query: 307 QQVAKQLYDLKVQPSTLIPKQVGNMYTASLYAAFASLLHEKHSSLEGKRVIMFSYGSGLT 366
Q +AK LYD KVQP+TLIPKQVGNMYTASLYAAFASL+H KHS+L GKRVI+FSYGSGLT
Sbjct: 303 QLLAKPLYDQKVQPTTLIPKQVGNMYTASLYAAFASLIHNKHSTLAGKRVILFSYGSGLT 362
Query: 367 ATMFSLQLQEGHRPFSLSNIVKVMDVPGKLKLRHEFPPEKFVDIMKLMEHRYGAKDFVTS 426
ATMFSLQL++ PFSLSN+ +VM+V GKLK RHEFPPE+FV+ +KLMEHRYGAK+FVTS
Sbjct: 363 ATMFSLQLRDSQHPFSLSNMARVMNVDGKLKSRHEFPPEEFVENLKLMEHRYGAKEFVTS 422
Query: 427 KDSSLLSPGTCYLTEVDSMFRRFYAKKENTSNAATCENG 465
KDSSLLSPGT YLTEVDSM+RRFY+KK S+ ENG
Sbjct: 423 KDSSLLSPGTFYLTEVDSMYRRFYSKKTKESSLTHAENG 461
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356539911|ref|XP_003538436.1| PREDICTED: hydroxymethylglutaryl-CoA synthase-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 822 bits (2122), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 388/459 (84%), Positives = 421/459 (91%)
Query: 7 KNVGILALDIYFPPTCVLQEALEVHDGVSKGKYTVGLGQDCMAFCSEVEDVISMSLTVVT 66
KNVGILA+DIYFPP CV QEALE HDG SKGKYT+GLGQDCM+FC+EVEDVISMSLTVVT
Sbjct: 3 KNVGILAIDIYFPPACVQQEALETHDGASKGKYTIGLGQDCMSFCTEVEDVISMSLTVVT 62
Query: 67 SLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTA 126
SLLEKY+IDP +GRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTA
Sbjct: 63 SLLEKYEIDPKLVGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTA 122
Query: 127 ALFNCVNWVESASWDGRYGLVVCTDSAVYAEGPARPTGGAAAVAMLIGPDAPIAFESKLR 186
ALFNCVNWVES SWDGRYGLVVCTDSAVYAEGPARPTGGAAA+AMLIGPDAPI+FESKLR
Sbjct: 123 ALFNCVNWVESNSWDGRYGLVVCTDSAVYAEGPARPTGGAAAIAMLIGPDAPISFESKLR 182
Query: 187 GSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKYFCQKFEKLEGRQFSMLDVD 246
GSHMSH YDFYKPNLASEYPVVDGKLSQTCYLMA+DSCYK FC K+EK EG+QFS+ D +
Sbjct: 183 GSHMSHVYDFYKPNLASEYPVVDGKLSQTCYLMAVDSCYKNFCHKYEKFEGKQFSLSDAE 242
Query: 247 YFVFHSPYNKLVQKSFARLFFNDFLRNASSVDEIAKEKLAPYSTLSDVESYQSRDLEKAS 306
YFVFHSPYNKLVQKSFARL FNDFL N+SSVDE+AKEKL P++TLS ESYQSRDLEKAS
Sbjct: 243 YFVFHSPYNKLVQKSFARLVFNDFLMNSSSVDEVAKEKLGPFATLSGDESYQSRDLEKAS 302
Query: 307 QQVAKQLYDLKVQPSTLIPKQVGNMYTASLYAAFASLLHEKHSSLEGKRVIMFSYGSGLT 366
QQVAK LYD KVQP+TLIPKQVGNMYTASLYAAFASL+H K+S+L GKRVI+FSYGSGLT
Sbjct: 303 QQVAKPLYDQKVQPTTLIPKQVGNMYTASLYAAFASLIHNKNSTLAGKRVILFSYGSGLT 362
Query: 367 ATMFSLQLQEGHRPFSLSNIVKVMDVPGKLKLRHEFPPEKFVDIMKLMEHRYGAKDFVTS 426
ATMFSLQL++ PFSLSNI +VMDV GKLK RHEFPPE+FV+ +KLMEHRYG K+FVTS
Sbjct: 363 ATMFSLQLRDSQHPFSLSNIARVMDVDGKLKSRHEFPPEEFVENLKLMEHRYGGKEFVTS 422
Query: 427 KDSSLLSPGTCYLTEVDSMFRRFYAKKENTSNAATCENG 465
KD+SLLSPGT YLTEVDSM+RRFY+KK S+ ENG
Sbjct: 423 KDTSLLSPGTFYLTEVDSMYRRFYSKKTKESSLTPAENG 461
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|42795470|gb|AAS46245.1| HMG-CoA synthase 2 [Hevea brasiliensis] | Back alignment and taxonomy information |
|---|
Score = 821 bits (2121), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 391/459 (85%), Positives = 418/459 (91%), Gaps = 3/459 (0%)
Query: 7 KNVGILALDIYFPPTCVLQEALEVHDGVSKGKYTVGLGQDCMAFCSEVEDVISMSLTVVT 66
KNVGILA+DIYFPPT V QEALE HDG SKGKYT+GLGQDCMAFC+EVEDVISMSLT VT
Sbjct: 3 KNVGILAMDIYFPPTYVQQEALEAHDGASKGKYTIGLGQDCMAFCTEVEDVISMSLTAVT 62
Query: 67 SLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTA 126
SLLEKY IDP QIGRLEVGSETVIDKSKSIKTFLMQIFEK+GNTDIEGVDS NACYGGTA
Sbjct: 63 SLLEKYNIDPNQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSANACYGGTA 122
Query: 127 ALFNCVNWVESASWDGRYGLVVCTDSAVYAEGPARPTGGAAAVAMLIGPDAPIAFESKLR 186
ALFNCVNWVES SWDGRYGLVVCTDSAVYAEGPARPTGGAAA+AMLIGP+APIAFESK R
Sbjct: 123 ALFNCVNWVESNSWDGRYGLVVCTDSAVYAEGPARPTGGAAAIAMLIGPEAPIAFESKFR 182
Query: 187 GSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKYFCQKFEKLEGRQFSMLDVD 246
GSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYK+FC K+EKLEG+QFS+ D +
Sbjct: 183 GSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKHFCAKYEKLEGKQFSISDAE 242
Query: 247 YFVFHSPYNKLVQKSFARLFFNDFLRNASSVDEIAKEKLAPYSTLSDVESYQSRDLEKAS 306
YFVFHSPYNKLVQKSFARL FNDF+RNASS+D+ AKEKLAP+STLS ESYQ+RDLEK S
Sbjct: 243 YFVFHSPYNKLVQKSFARLVFNDFVRNASSIDDAAKEKLAPFSTLSGDESYQNRDLEKVS 302
Query: 307 QQVAKQLYDLKVQPSTLIPKQVGNMYTASLYAAFASLLHEKHSSLEGKRVIMFSYGSGLT 366
QQVAK LYD KVQP+TLIPKQVGNMYTASLYAAFASLLH KH+ L GKRVI+FSYGSGLT
Sbjct: 303 QQVAKPLYDAKVQPTTLIPKQVGNMYTASLYAAFASLLHNKHTELAGKRVILFSYGSGLT 362
Query: 367 ATMFSLQLQEGHRPFSLSNIVKVMDVPGKLKLRHEFPPEKFVDIMKLMEHRYGAKDFVTS 426
ATMFSL+L EG PFSLSNI VM+V GKLK RHEFPPEKF IMKLMEHRYGAKDFVTS
Sbjct: 363 ATMFSLRLHEGQHPFSLSNIATVMNVAGKLKTRHEFPPEKFAVIMKLMEHRYGAKDFVTS 422
Query: 427 KDSSLLSPGTCYLTEVDSMFRRFYAKKENTSNAATCENG 465
KD S+L+PGT YLTEVD+M+RRFYA+K + T ENG
Sbjct: 423 KDCSILAPGTYYLTEVDTMYRRFYAQK---AVGDTVENG 458
|
Source: Hevea brasiliensis Species: Hevea brasiliensis Genus: Hevea Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|164604966|dbj|BAF98279.1| hydroxymethylglutaryl-CoA synthase [Hevea brasiliensis] | Back alignment and taxonomy information |
|---|
Score = 820 bits (2118), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 390/459 (84%), Positives = 419/459 (91%), Gaps = 3/459 (0%)
Query: 7 KNVGILALDIYFPPTCVLQEALEVHDGVSKGKYTVGLGQDCMAFCSEVEDVISMSLTVVT 66
KNVGILA+DIYFPPT V QEALE HDG SKGKYT+GLGQDCM FC+EVEDVISMSLT VT
Sbjct: 3 KNVGILAMDIYFPPTYVQQEALEAHDGASKGKYTIGLGQDCMPFCTEVEDVISMSLTAVT 62
Query: 67 SLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTA 126
SLL+KY IDP QIGRLEVGSETVIDKSKSIKTFLMQIFEK+GNTDIEGVDSTNACYGGTA
Sbjct: 63 SLLDKYNIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTA 122
Query: 127 ALFNCVNWVESASWDGRYGLVVCTDSAVYAEGPARPTGGAAAVAMLIGPDAPIAFESKLR 186
ALFNCVNWVES+SWDGRYGLVVCTDSAVYAEGPARPTGGAAA+AMLIGP+APIAFESK R
Sbjct: 123 ALFNCVNWVESSSWDGRYGLVVCTDSAVYAEGPARPTGGAAAIAMLIGPEAPIAFESKFR 182
Query: 187 GSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKYFCQKFEKLEGRQFSMLDVD 246
GSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYK+FC K+EKLEG+QFS+ D +
Sbjct: 183 GSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKHFCAKYEKLEGKQFSISDAE 242
Query: 247 YFVFHSPYNKLVQKSFARLFFNDFLRNASSVDEIAKEKLAPYSTLSDVESYQSRDLEKAS 306
YFVFHSPYNKLVQKSFARL FNDF+RNASS+D+ AKEKLAP+STLS ESYQ+RDLEK S
Sbjct: 243 YFVFHSPYNKLVQKSFARLVFNDFVRNASSIDDAAKEKLAPFSTLSGDESYQNRDLEKVS 302
Query: 307 QQVAKQLYDLKVQPSTLIPKQVGNMYTASLYAAFASLLHEKHSSLEGKRVIMFSYGSGLT 366
QQVAK LYD KVQP+TLIPKQVGNMYTASLYAAFASLLH KH+ L GKRVI+FSYGSGLT
Sbjct: 303 QQVAKPLYDAKVQPTTLIPKQVGNMYTASLYAAFASLLHNKHTELAGKRVILFSYGSGLT 362
Query: 367 ATMFSLQLQEGHRPFSLSNIVKVMDVPGKLKLRHEFPPEKFVDIMKLMEHRYGAKDFVTS 426
ATMFSL+L EG PFSLSNI VM+V GKLK RHEFPPEKF IMKLMEHRYGAKDFVTS
Sbjct: 363 ATMFSLRLHEGQHPFSLSNIATVMNVAGKLKTRHEFPPEKFAVIMKLMEHRYGAKDFVTS 422
Query: 427 KDSSLLSPGTCYLTEVDSMFRRFYAKKENTSNAATCENG 465
KD S+L+PGT YLTEVD+M+RRFYA+K + T ENG
Sbjct: 423 KDCSILAPGTYYLTEVDTMYRRFYAQK---AVGDTVENG 458
|
Source: Hevea brasiliensis Species: Hevea brasiliensis Genus: Hevea Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255537251|ref|XP_002509692.1| hydroxymethylglutaryl-CoA synthase, putative [Ricinus communis] gi|223549591|gb|EEF51079.1| hydroxymethylglutaryl-CoA synthase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 818 bits (2112), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 390/459 (84%), Positives = 418/459 (91%), Gaps = 3/459 (0%)
Query: 7 KNVGILALDIYFPPTCVLQEALEVHDGVSKGKYTVGLGQDCMAFCSEVEDVISMSLTVVT 66
KNVGILALDIYFPPTCV QEALE HDG SKGKYT+GLGQDCM FC+EVEDVISMSLT VT
Sbjct: 3 KNVGILALDIYFPPTCVQQEALEAHDGASKGKYTIGLGQDCMGFCTEVEDVISMSLTAVT 62
Query: 67 SLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTA 126
SLL+ Y IDP QIGRLEVGSETVIDKSKSIKTFLMQIFEK+GNTDIEGVDS+NACYGGTA
Sbjct: 63 SLLDNYNIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKHGNTDIEGVDSSNACYGGTA 122
Query: 127 ALFNCVNWVESASWDGRYGLVVCTDSAVYAEGPARPTGGAAAVAMLIGPDAPIAFESKLR 186
ALFNCVNWVES+SWDGRYGLVVCTDSAVYAEGPARPTGGAAA+AMLIGPDAPIAFESK R
Sbjct: 123 ALFNCVNWVESSSWDGRYGLVVCTDSAVYAEGPARPTGGAAAIAMLIGPDAPIAFESKYR 182
Query: 187 GSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKYFCQKFEKLEGRQFSMLDVD 246
GSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYK+FC K+EK EG+QFS+ D +
Sbjct: 183 GSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKHFCAKYEKFEGKQFSISDAE 242
Query: 247 YFVFHSPYNKLVQKSFARLFFNDFLRNASSVDEIAKEKLAPYSTLSDVESYQSRDLEKAS 306
YFVFHSPYNKLVQKSFARL FNDF+RNASS+DE AKEKLAP+STL+ ESYQ+RDLEK S
Sbjct: 243 YFVFHSPYNKLVQKSFARLVFNDFVRNASSIDEAAKEKLAPFSTLTGDESYQNRDLEKVS 302
Query: 307 QQVAKQLYDLKVQPSTLIPKQVGNMYTASLYAAFASLLHEKHSSLEGKRVIMFSYGSGLT 366
QQVAK LYD KVQP+TLIPKQVGNMYTASLYAAFASLLH K+S L GKRVI+FSYGSGLT
Sbjct: 303 QQVAKPLYDAKVQPTTLIPKQVGNMYTASLYAAFASLLHNKNSKLAGKRVILFSYGSGLT 362
Query: 367 ATMFSLQLQEGHRPFSLSNIVKVMDVPGKLKLRHEFPPEKFVDIMKLMEHRYGAKDFVTS 426
ATMFSL+L EG PFSLSNI VM+V KLK RHEF PEKFV+ MKLMEHRYGAKDFVTS
Sbjct: 363 ATMFSLRLHEGQHPFSLSNIATVMNVTDKLKSRHEFSPEKFVETMKLMEHRYGAKDFVTS 422
Query: 427 KDSSLLSPGTCYLTEVDSMFRRFYAKKENTSNAATCENG 465
+D SLL+PGT YLTEVD+M+RRFYAKK + TCENG
Sbjct: 423 QDCSLLAPGTYYLTEVDTMYRRFYAKKLVDN---TCENG 458
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|378587536|gb|AFC34137.1| 3-hydroxy-3-methylglutaryl-CoA synthase [Camellia sinensis] | Back alignment and taxonomy information |
|---|
Score = 817 bits (2110), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 384/460 (83%), Positives = 421/460 (91%), Gaps = 3/460 (0%)
Query: 7 KNVGILALDIYFPPTCVLQEALEVHDGVSKGKYTVGLGQDCMAFCSEVEDVISMSLTVVT 66
KNVGILA++IYFPPTCV QEALE HDGVSKGKYT+GLGQDC+AFC+EVEDVISMSLT VT
Sbjct: 6 KNVGILAVEIYFPPTCVQQEALEAHDGVSKGKYTIGLGQDCLAFCTEVEDVISMSLTAVT 65
Query: 67 SLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTA 126
SLLEKY IDP QIGRLEVGSETVIDKSKSIKTFLMQIFE+ GNTDIEGVDSTNACYGGTA
Sbjct: 66 SLLEKYGIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEETGNTDIEGVDSTNACYGGTA 125
Query: 127 ALFNCVNWVESASWDGRYGLVVCTDSAVYAEGPARPTGGAAAVAMLIGPDAPIAFESKLR 186
AL NCVNWVES+SWDGRYGLVVCTDSAVYAEGPARPTGGAAA+AMLIGPDAPIAFESK+R
Sbjct: 126 ALLNCVNWVESSSWDGRYGLVVCTDSAVYAEGPARPTGGAAAIAMLIGPDAPIAFESKIR 185
Query: 187 GSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKYFCQKFEKLEGRQFSMLDVD 246
GSHMSH YDFY+PNLASEYPVVDGKLSQTCYLMA+DSCY C K+EK EG+QFS+ D D
Sbjct: 186 GSHMSHVYDFYRPNLASEYPVVDGKLSQTCYLMAVDSCYNRLCNKYEKFEGKQFSVNDAD 245
Query: 247 YFVFHSPYNKLVQKSFARLFFNDFLRNASSVDEIAKEKLAPYSTLSDVESYQSRDLEKAS 306
YFVFHSPYNKLVQKSFARL FNDFLRNASS++E AKEKLAP+STL+ ESYQSRDLEKA+
Sbjct: 246 YFVFHSPYNKLVQKSFARLLFNDFLRNASSINEAAKEKLAPFSTLTGDESYQSRDLEKAT 305
Query: 307 QQVAKQLYDLKVQPSTLIPKQVGNMYTASLYAAFASLLHEKHSSLEGKRVIMFSYGSGLT 366
QQVAK LYD KVQP+TL+PKQVGNMYTASLYAAFASL+H+KHSSL G+R++MFSYGSGLT
Sbjct: 306 QQVAKALYDAKVQPTTLVPKQVGNMYTASLYAAFASLIHKKHSSLVGQRIVMFSYGSGLT 365
Query: 367 ATMFSLQLQEGHRPFSLSNIVKVMDVPGKLKLRHEFPPEKFVDIMKLMEHRYGAKDFVTS 426
ATMFS +++E PFSLSNI VM+V KLK RHEFPPEKFV+ MK+MEHRYGAKDFVTS
Sbjct: 366 ATMFSFRVRECQHPFSLSNIAAVMNVDKKLKSRHEFPPEKFVETMKVMEHRYGAKDFVTS 425
Query: 427 KDSSLLSPGTCYLTEVDSMFRRFYAKKENTSNAATCENGA 466
KD SLL+PGT YLTEVDSM+RRFYAKK +T+ CENG+
Sbjct: 426 KDCSLLAPGTYYLTEVDSMYRRFYAKKASTT---ACENGS 462
|
Source: Camellia sinensis Species: Camellia sinensis Genus: Camellia Family: Theaceae Order: Ericales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|16417956|gb|AAL18930.1|AF429389_1 hydroxymethylglutaryl coenzyme A synthase [Hevea brasiliensis] | Back alignment and taxonomy information |
|---|
Score = 816 bits (2109), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 388/459 (84%), Positives = 417/459 (90%), Gaps = 3/459 (0%)
Query: 7 KNVGILALDIYFPPTCVLQEALEVHDGVSKGKYTVGLGQDCMAFCSEVEDVISMSLTVVT 66
KNVGILA+DIYFPPT V QEALE HDG SKGKYT+GLGQDCMAFC+EVEDVISMSLT VT
Sbjct: 3 KNVGILAVDIYFPPTFVQQEALEAHDGASKGKYTIGLGQDCMAFCTEVEDVISMSLTAVT 62
Query: 67 SLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTA 126
SLL+KY IDP QIGRLEVGSETVIDKSKSIKTFLMQIFEK+GNTDIEGVDSTNACYGGTA
Sbjct: 63 SLLDKYNIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTA 122
Query: 127 ALFNCVNWVESASWDGRYGLVVCTDSAVYAEGPARPTGGAAAVAMLIGPDAPIAFESKLR 186
ALFNCVNWVES+SWDGRYGLVVCTDSAVYAEGPARPTGGAAA+A+L+GPDAPIAFESK R
Sbjct: 123 ALFNCVNWVESSSWDGRYGLVVCTDSAVYAEGPARPTGGAAAIAILVGPDAPIAFESKFR 182
Query: 187 GSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKYFCQKFEKLEGRQFSMLDVD 246
GSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYK+FC K+EK EG+QFS+ D +
Sbjct: 183 GSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKHFCAKYEKFEGKQFSISDAE 242
Query: 247 YFVFHSPYNKLVQKSFARLFFNDFLRNASSVDEIAKEKLAPYSTLSDVESYQSRDLEKAS 306
YFVFHSPYNKLVQKSFARL FNDF+RNASS+DE AKEKLAP+S LS ESYQ+RDLEK S
Sbjct: 243 YFVFHSPYNKLVQKSFARLVFNDFVRNASSIDETAKEKLAPFSNLSGDESYQNRDLEKVS 302
Query: 307 QQVAKQLYDLKVQPSTLIPKQVGNMYTASLYAAFASLLHEKHSSLEGKRVIMFSYGSGLT 366
QQVAK LYD KV+P+TLIPKQVGNMYTASLYAAFASLLH KH+ L GKRV +FSYGSGLT
Sbjct: 303 QQVAKPLYDAKVKPTTLIPKQVGNMYTASLYAAFASLLHSKHTELAGKRVTLFSYGSGLT 362
Query: 367 ATMFSLQLQEGHRPFSLSNIVKVMDVPGKLKLRHEFPPEKFVDIMKLMEHRYGAKDFVTS 426
ATMFSL+L EG PFSLSNI VM+V GKLK RHE PPEKFVDIMKLMEHRYGAKDFVTS
Sbjct: 363 ATMFSLRLHEGQHPFSLSNIASVMNVAGKLKARHELPPEKFVDIMKLMEHRYGAKDFVTS 422
Query: 427 KDSSLLSPGTCYLTEVDSMFRRFYAKKENTSNAATCENG 465
KD SLL+ GT YLTEVDS++RRFYA+K + T ENG
Sbjct: 423 KDCSLLASGTYYLTEVDSLYRRFYAQK---AVGNTVENG 458
|
Source: Hevea brasiliensis Species: Hevea brasiliensis Genus: Hevea Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357481763|ref|XP_003611167.1| Hydroxymethylglutaryl-CoA synthase [Medicago truncatula] gi|355512502|gb|AES94125.1| Hydroxymethylglutaryl-CoA synthase [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 816 bits (2109), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 385/460 (83%), Positives = 420/460 (91%)
Query: 8 NVGILALDIYFPPTCVLQEALEVHDGVSKGKYTVGLGQDCMAFCSEVEDVISMSLTVVTS 67
NVGILALDIYFPP CV QEALE HDG SKGKYT+GLGQDCM+FCS+VEDVISMSLTVV++
Sbjct: 8 NVGILALDIYFPPNCVQQEALEAHDGASKGKYTIGLGQDCMSFCSDVEDVISMSLTVVST 67
Query: 68 LLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAA 127
LL+KY+IDP QIGRLEVGSETVIDKSKSIK+FLMQIFEKYGNTDIEGVDSTNACYGGTAA
Sbjct: 68 LLQKYEIDPKQIGRLEVGSETVIDKSKSIKSFLMQIFEKYGNTDIEGVDSTNACYGGTAA 127
Query: 128 LFNCVNWVESASWDGRYGLVVCTDSAVYAEGPARPTGGAAAVAMLIGPDAPIAFESKLRG 187
LFNCVNWVES SWDGRYGLVVCTDSAVYAEGPARPTGGAAA+AMLIGPDAPI+FESKLRG
Sbjct: 128 LFNCVNWVESNSWDGRYGLVVCTDSAVYAEGPARPTGGAAAIAMLIGPDAPISFESKLRG 187
Query: 188 SHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKYFCQKFEKLEGRQFSMLDVDY 247
SHM+H YDFYKP+LASEYPVVDGKLSQTCYLMALD+C+K FCQK+EK EG+QFS+ D DY
Sbjct: 188 SHMAHVYDFYKPDLASEYPVVDGKLSQTCYLMALDTCFKNFCQKYEKHEGKQFSLSDADY 247
Query: 248 FVFHSPYNKLVQKSFARLFFNDFLRNASSVDEIAKEKLAPYSTLSDVESYQSRDLEKASQ 307
FVFHSPYNKLVQKSFARL F+DFLRN SS DE+ EKL P++TLSD ESYQSRDLEKASQ
Sbjct: 248 FVFHSPYNKLVQKSFARLVFSDFLRNPSSKDEVTNEKLGPFTTLSDDESYQSRDLEKASQ 307
Query: 308 QVAKQLYDLKVQPSTLIPKQVGNMYTASLYAAFASLLHEKHSSLEGKRVIMFSYGSGLTA 367
QVAK LYD KVQPSTLIPKQVGNMYTAS+YAAFASLLH K+SSLEGKRVI+FSYGSGLTA
Sbjct: 308 QVAKPLYDEKVQPSTLIPKQVGNMYTASIYAAFASLLHNKNSSLEGKRVILFSYGSGLTA 367
Query: 368 TMFSLQLQEGHRPFSLSNIVKVMDVPGKLKLRHEFPPEKFVDIMKLMEHRYGAKDFVTSK 427
TMFSLQL+E PFSLSNI +VMDV KLK RHEFPP+KF++ +KLMEHRYGAKD+VTSK
Sbjct: 368 TMFSLQLRETKHPFSLSNIARVMDVAEKLKSRHEFPPQKFIETLKLMEHRYGAKDYVTSK 427
Query: 428 DSSLLSPGTCYLTEVDSMFRRFYAKKENTSNAATCENGAS 467
DSSLL+PGT YLTEVD+M+RRFY K + SN NG S
Sbjct: 428 DSSLLAPGTFYLTEVDTMYRRFYTTKSSESNLTPAVNGLS 467
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356563228|ref|XP_003549866.1| PREDICTED: hydroxymethylglutaryl-CoA synthase-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 815 bits (2105), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 389/459 (84%), Positives = 418/459 (91%), Gaps = 2/459 (0%)
Query: 7 KNVGILALDIYFPPTCVLQEALEVHDGVSKGKYTVGLGQDCMAFCSEVEDVISMSLTVVT 66
KNVGILA+DIYFPPTC+ QE LE HDG SKGKYT+GLGQDCMAFC+EVEDVISMSLTVV+
Sbjct: 3 KNVGILAIDIYFPPTCIQQELLEAHDGASKGKYTIGLGQDCMAFCTEVEDVISMSLTVVS 62
Query: 67 SLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTA 126
SLLEKY IDP QIGRLEVGSETVIDKSKSIKTF+MQIFEKYGNTDIEGVDSTNACYGGTA
Sbjct: 63 SLLEKYAIDPKQIGRLEVGSETVIDKSKSIKTFIMQIFEKYGNTDIEGVDSTNACYGGTA 122
Query: 127 ALFNCVNWVESASWDGRYGLVVCTDSAVYAEGPARPTGGAAAVAMLIGPDAPIAFESKLR 186
ALFNCVNWVES+SWDGRYGLVVCTDSAVYAEGPARPTGGAAAVAMLIGPDAPI+FESKLR
Sbjct: 123 ALFNCVNWVESSSWDGRYGLVVCTDSAVYAEGPARPTGGAAAVAMLIGPDAPISFESKLR 182
Query: 187 GSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKYFCQKFEKLEGRQFSMLDVD 246
GSHM+HAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCY + K+EK EG+QFS+ D +
Sbjct: 183 GSHMAHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYNHLSHKYEKQEGKQFSISDAE 242
Query: 247 YFVFHSPYNKLVQKSFARLFFNDFLRNASSVDEIAKEKLAPYSTLSDVESYQSRDLEKAS 306
YFVFHSPYNKLVQKSFARL FNDFL+NAS VDE AKEKL P++TLS ESYQSRDLEKAS
Sbjct: 243 YFVFHSPYNKLVQKSFARLVFNDFLKNASFVDEAAKEKLEPFATLSGDESYQSRDLEKAS 302
Query: 307 QQVAKQLYDLKVQPSTLIPKQVGNMYTASLYAAFASLLHEKHSSLEGKRVIMFSYGSGLT 366
QQVAK YD KVQP+TLIPKQVGNMYTASLYAAF SL+H KHS+L+GKRVI+FSYGSGLT
Sbjct: 303 QQVAKPQYDAKVQPTTLIPKQVGNMYTASLYAAFISLIHNKHSTLDGKRVILFSYGSGLT 362
Query: 367 ATMFSLQLQEGHRPFSLSNIVKVMDVPGKLKLRHEFPPEKFVDIMKLMEHRYGAKDFVTS 426
+TMFSL L+EG PFSLSNI K+MDV GKLK RHEFPPEKFV+ MKLMEHRYG K+FVTS
Sbjct: 363 STMFSLLLREGQHPFSLSNIDKMMDVAGKLKSRHEFPPEKFVETMKLMEHRYGGKEFVTS 422
Query: 427 KDSSLLSPGTCYLTEVDSMFRRFYAKKENTSNAATCENG 465
KD+SLLSPGT YLTEVDSM+RRFYAKK TS NG
Sbjct: 423 KDTSLLSPGTFYLTEVDSMYRRFYAKK--TSENGLVTNG 459
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 467 | ||||||
| TAIR|locus:2137015 | 461 | HMGS "HYDROXYMETHYLGLUTARYL-CO | 0.972 | 0.984 | 0.800 | 1.3e-201 | |
| DICTYBASE|DDB_G0288461 | 482 | hgsA "hydroxymethylglutaryl-Co | 0.950 | 0.921 | 0.515 | 2.8e-121 | |
| ZFIN|ZDB-GENE-040426-1042 | 519 | hmgcs1 "3-hydroxy-3-methylglut | 0.957 | 0.861 | 0.527 | 1.6e-118 | |
| UNIPROTKB|F1SMG8 | 548 | HMGCS1 "Uncharacterized protei | 0.985 | 0.839 | 0.502 | 6.9e-118 | |
| UNIPROTKB|Q01581 | 520 | HMGCS1 "Hydroxymethylglutaryl- | 0.985 | 0.884 | 0.502 | 8.8e-118 | |
| UNIPROTKB|F1M9Q5 | 474 | Hmgcs2 "Hydroxymethylglutaryl- | 0.963 | 0.949 | 0.518 | 1.4e-117 | |
| UNIPROTKB|P54868 | 508 | HMGCS2 "Hydroxymethylglutaryl- | 0.963 | 0.885 | 0.511 | 2.3e-117 | |
| UNIPROTKB|F6RJG0 | 565 | HMGCS1 "Uncharacterized protei | 0.985 | 0.814 | 0.504 | 3e-117 | |
| MGI|MGI:101939 | 508 | Hmgcs2 "3-hydroxy-3-methylglut | 0.961 | 0.883 | 0.519 | 3e-117 | |
| RGD|2804 | 508 | Hmgcs2 "3-hydroxy-3-methylglut | 0.963 | 0.885 | 0.516 | 4.9e-117 |
| TAIR|locus:2137015 HMGS "HYDROXYMETHYLGLUTARYL-COA SYNTHASE" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1951 (691.8 bits), Expect = 1.3e-201, P = 1.3e-201
Identities = 365/456 (80%), Positives = 402/456 (88%)
Query: 7 KNVGILALDIYFPPTCVLQEALEVHDGVSKGKYTVGLGQDCMAFCSEVEDVISMSLTVVT 66
KNVGILA+DIYFPPTCV QEALE HDG SKGKYT+GLGQDC+AFC+E+EDVISMS VT
Sbjct: 3 KNVGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQDCLAFCTELEDVISMSFNAVT 62
Query: 67 SLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTA 126
SL EKYKIDP QIGRLEVGSETVIDKSKSIKTFLMQ+FEK GNTD+EGVDSTNACYGGTA
Sbjct: 63 SLFEKYKIDPNQIGRLEVGSETVIDKSKSIKTFLMQLFEKCGNTDVEGVDSTNACYGGTA 122
Query: 127 ALFNCVNWVESASWDGRYGLVVCTDSAVYAEGPARPTGGAAAVAMLIGPDAPIAFESKLR 186
AL NCVNWVES SWDGRYGLV+CTDSAVYAEGPARPTGGAAA+AMLIGPDAPI FESKLR
Sbjct: 123 ALLNCVNWVESNSWDGRYGLVICTDSAVYAEGPARPTGGAAAIAMLIGPDAPIVFESKLR 182
Query: 187 GSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKYFCQKFEKLEGRQFSMLDVD 246
SHM+H YDFYKPNLASEYPVVDGKLSQTCYLMALDSCYK+ C KFEK+EG++FS+ D D
Sbjct: 183 ASHMAHVYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKHLCNKFEKIEGKEFSINDAD 242
Query: 247 YFVFHSPYNKLVQKSFARLFFNDFLRNASSVDEIAKEKLAPYSTLSDVESYQSRDLEKAS 306
Y VFHSPYNKLVQKSFARL +NDFLRNASS+DE AKEK PYS+L+ ESYQSRDLEK S
Sbjct: 243 YIVFHSPYNKLVQKSFARLLYNDFLRNASSIDEAAKEKFTPYSSLTLDESYQSRDLEKVS 302
Query: 307 QQVAKQLYDLKVQPSTLIPKQVGNMYTASLYAAFASLLHEKHSSLEGKRVIMFSYGSGLT 366
QQ+AK YD KVQP+TLIPK+VGNMYTASLYAAFASL+H+KH+ L GKRV+MFSYGSG T
Sbjct: 303 QQIAKPFYDAKVQPTTLIPKEVGNMYTASLYAAFASLIHKKHNDLAGKRVVMFSYGSGST 362
Query: 367 ATMFSLQLQEGHRPFSLSNIVKVMDVPGKLKLRHEFPPEKFVDIMKLMEHRYGAKDFVTS 426
ATMFSL+L + PFS+SNI VMDV GKLK RHE+ PEKFV+ MKLMEHRYGAKDFVT+
Sbjct: 363 ATMFSLRLNDNKPPFSISNIASVMDVGGKLKARHEYAPEKFVETMKLMEHRYGAKDFVTT 422
Query: 427 KDS--SLLSPGTCYLTEVDSMFRRFYAKKENTSNAA 460
K+ LL+PGT YL EVDS++RRFY KK + A
Sbjct: 423 KEGIIDLLAPGTYYLKEVDSLYRRFYGKKGEDGSVA 458
|
|
| DICTYBASE|DDB_G0288461 hgsA "hydroxymethylglutaryl-CoA synthase" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 1193 (425.0 bits), Expect = 2.8e-121, P = 2.8e-121
Identities = 233/452 (51%), Positives = 313/452 (69%)
Query: 6 PKNVGILALDIYFPPTCVLQEALEVHDGVSKGKYTVGLGQDCMAFCSEVEDVISMSLTVV 65
P+N+GI +++YFP T V QE LE DGVS+GKYT+GLGQ MAFC + ED+ S+SL V
Sbjct: 4 PENIGIHGIEVYFPSTYVAQEDLEKFDGVSQGKYTLGLGQTNMAFCGDREDIYSLSLNAV 63
Query: 66 TSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGT 125
+L++K+ +DP IGRLEVG+ETVIDKSKS+KT LM +F K+GNT I+G+D+ NACYGGT
Sbjct: 64 NNLMDKFNVDPNSIGRLEVGTETVIDKSKSVKTVLMDLFAKHGNTSIDGIDTINACYGGT 123
Query: 126 AALFNCVNWVESASWDGRYGLVVCTDSAVYAEGPARPTGGAAAVAMLIGPDAPIAFESKL 185
+AL N + W+ES+ WDGR +VV D AVY +GPARPTGGA VAMLIGP+API FES L
Sbjct: 124 SALHNALQWMESSYWDGRNAIVVAGDIAVYEKGPARPTGGAGVVAMLIGPNAPITFESGL 183
Query: 186 RGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKYFCQKFEKLEGRQFSMLDV 245
RG HM + YDFYKP++ SEYP VDGKLS +CY A+D+CY + + FEK G+ FS+ V
Sbjct: 184 RGVHMENVYDFYKPDMDSEYPRVDGKLSISCYFRAIDNCYNRYAKAFEKKYGKSFSLDQV 243
Query: 246 DYFVFHSPYNKLVQKSFARLFFNDFLRNASSVDEIAKEKLAPYSTLSDVESYQSRDLEKA 305
D+ +FHSPYNKLVQKSF R+ +NDFL N + A L Y + ++Y LEKA
Sbjct: 244 DFALFHSPYNKLVQKSFGRMLYNDFLNNPND-SRYAS--LEAYKNVKPEDTYFDSVLEKA 300
Query: 306 SQQVAKQLYDLKVQPSTLIPKQVGNMYTASLYAAFASLLHEKHSSLEGKRVIMFSYGSGL 365
+ K Y KV P+TL+ KQ+GN Y S Y+ SLL EK + L GKRV+ FSYGSGL
Sbjct: 301 LSAITKNDYATKVAPTTLLAKQLGNTYCGSTYSGLLSLLDEKSNDLVGKRVLTFSYGSGL 360
Query: 366 TATMFSLQLQEGHRPFSLSNIVKVMDVPGKLKLRHEFPPEKFVDIMKLMEHRYGAKDFVT 425
A+ FS +++ +P +++IV+ +D+ +L R PE F + + L E R+ K++V
Sbjct: 361 AASAFSFKVE---KP--INHIVEKVDLKNRLAKRVRVEPEIFTEKLSLRETRHNLKNYVP 415
Query: 426 SKDSSLLSPGTCYLTEVDSMFRRFYAKKENTS 457
S +++ + PG+ YL+ VD+ R Y + +TS
Sbjct: 416 SDETTNMFPGSFYLSSVDNAGIRKYDRTYSTS 447
|
|
| ZFIN|ZDB-GENE-040426-1042 hmgcs1 "3-hydroxy-3-methylglutaryl-Coenzyme A synthase 1 (soluble)" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 1167 (415.9 bits), Expect = 1.6e-118, P = 1.6e-118
Identities = 243/461 (52%), Positives = 312/461 (67%)
Query: 4 WHPKNVGILALDIYFPPTCVLQEALEVHDGVSKGKYTVGLGQDCMAFCSEVEDVISMSLT 63
W PK+VGI+A+++Y P V Q LE +DGV GKYTVGLGQ M FCS+ ED+ S+ LT
Sbjct: 13 W-PKDVGIIAMEVYVPSQYVDQAELEEYDGVGAGKYTVGLGQARMGFCSDREDINSLCLT 71
Query: 64 VVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYG 123
VV L+E+ + +GRLEVG+ET+IDKSKS KT LMQ+FE+ GNTD+EGVD+TNACYG
Sbjct: 72 VVQRLMERNGLSYESVGRLEVGTETIIDKSKSTKTVLMQLFEESGNTDVEGVDTTNACYG 131
Query: 124 GTAALFNCVNWVESASWDGRYGLVVCTDSAVYAEGPARPTGGAAAVAMLIGPDAPIAFES 183
GTAALFN VNWVES+SWDGRY LVV D AVYA G ARPTGGA AVAML+GP+AP+AFE
Sbjct: 132 GTAALFNAVNWVESSSWDGRYALVVAGDIAVYATGSARPTGGAGAVAMLVGPNAPLAFER 191
Query: 184 KLRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKYFCQKF------EKLEG 237
LRG+HM HAYDFYKP++ SEYPVVDGKLS CYL ALD CY + K E EG
Sbjct: 192 GLRGTHMQHAYDFYKPDMVSEYPVVDGKLSIQCYLSALDQCYSVYKNKIHARWQREGTEG 251
Query: 238 RQFSMLDVDYFVFHSPYNKLVQKSFARLFFNDFLRNAS-SVDEIAKEKLAPYSTLSDVES 296
R S+ D + VFHSPY KLVQKS ARL NDFL + S +++ L + + ++
Sbjct: 252 R-CSLEDFGFMVFHSPYCKLVQKSLARLMLNDFLCHPSPNMESGPFSGLEAFRDVKIEDT 310
Query: 297 YQSRDLEKASQQVAKQLYDLKVQPSTLIPKQVGNMYTASLYAAFASLLHEKHS--SLEGK 354
Y RD+EKA + + +L+D K + S LI Q GNMYT S+Y AS+L + H+ L G+
Sbjct: 311 YFDRDVEKAFMKASSELFDDKTKASLLISNQNGNMYTPSVYGCLASVLAQ-HTPQQLAGQ 369
Query: 355 RVIMFSYGSGLTATMFSLQL-QEGHRPFSLSNIVKVM-DVPGKLKLRHEFPPEKFVDIMK 412
R+ +FSYGSG AT++S+++ Q+G +L +V + D+P +L R + P F + MK
Sbjct: 370 RIGVFSYGSGFAATLYSIKVTQDGTPGSALDKLVSSLCDLPARLDSRQKVSPGVFAETMK 429
Query: 413 LMEHRYGAKDFVTSKDSSLLSPGTCYLTEVDSMFRRFYAKK 453
L E + +++ L PGT YLT VD RR YA++
Sbjct: 430 LREETHHLANYIPQGSVDELFPGTWYLTRVDEKHRRQYARR 470
|
|
| UNIPROTKB|F1SMG8 HMGCS1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 1161 (413.8 bits), Expect = 6.9e-118, P = 6.9e-118
Identities = 236/470 (50%), Positives = 316/470 (67%)
Query: 4 WHPKNVGILALDIYFPPTCVLQEALEVHDGVSKGKYTVGLGQDCMAFCSEVEDVISMSLT 63
W PK+VGI+AL+IYFP V Q LE +DGV+ G+YT+GLGQ M FC++ ED+ S+ +T
Sbjct: 41 W-PKDVGIVALEIYFPSQYVDQAELEKYDGVAAGRYTIGLGQAKMGFCTDREDINSLCMT 99
Query: 64 VVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYG 123
VV +L+E+ + IGRLEVG+ET+IDKSKS+KT LMQ+FE+ GNTDIEG+D+ NACYG
Sbjct: 100 VVQNLMERNSLSYDCIGRLEVGTETIIDKSKSVKTNLMQLFEESGNTDIEGIDTINACYG 159
Query: 124 GTAALFNCVNWVESASWDGRYGLVVCTDSAVYAEGPARPTGGAAAVAMLIGPDAPIAFES 183
GTAA+FN VNW+ES+SWDGRY LVV D AVYA G ARPTGG A+A+LIGP+AP+ FE
Sbjct: 160 GTAAVFNAVNWIESSSWDGRYALVVAGDIAVYAAGNARPTGGVGAIALLIGPNAPLIFER 219
Query: 184 KLRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKYFCQKFE---KLEG--R 238
LRG+HM HAYDFYKP++ SEYP+VDGKLS CYL ALD CY + +K + EG +
Sbjct: 220 GLRGTHMQHAYDFYKPDMLSEYPIVDGKLSIECYLSALDRCYSVYRKKIHARWQKEGNDK 279
Query: 239 QFSMLDVDYFVFHSPYNKLVQKSFARLFFNDFLRNASSVDEIAKEKLAPYSTLSDVESYQ 298
F++ D + VFHSPY KLVQKS AR+ NDFL + + L + + ++Y
Sbjct: 280 DFTLNDFGFMVFHSPYCKLVQKSLARMLLNDFLNDQNRDKNSIYSGLEAFGDVKLEDTYF 339
Query: 299 SRDLEKASQQVAKQLYDLKVQPSTLIPKQVGNMYTASLYAAFASLLHE-KHSSLEGKRVI 357
RD+EKA + + +L++ K + S L+ Q GNMYT+SLY AS+L + L GKR+
Sbjct: 340 DRDVEKAFMKASSELFNQKTKASLLVSNQNGNMYTSSLYGCLASVLAQYSPQELAGKRIG 399
Query: 358 MFSYGSGLTATMFSLQLQEGHRPFS-LSNIV-KVMDVPGKLKLRHEFPPEKFVDIMKLME 415
MFSYGSGL AT++SL++ + P S L I+ + D+ +L R P+ F DIMKL E
Sbjct: 400 MFSYGSGLAATLYSLKVTQDATPGSALDKIIASLCDLKSRLDSRTCIAPDVFNDIMKLRE 459
Query: 416 HRYGAKDFVTSKDSSLLSPGTCYLTEVDSMFRRFYAKKENTSNAATCENG 465
+ + +++ L GT YL VD RR YA++ + N +T + G
Sbjct: 460 DTHHSVNYIPQSSIDSLFEGTWYLVRVDEKHRRTYARRPSR-NESTLDEG 508
|
|
| UNIPROTKB|Q01581 HMGCS1 "Hydroxymethylglutaryl-CoA synthase, cytoplasmic" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 1160 (413.4 bits), Expect = 8.8e-118, P = 8.8e-118
Identities = 236/470 (50%), Positives = 313/470 (66%)
Query: 4 WHPKNVGILALDIYFPPTCVLQEALEVHDGVSKGKYTVGLGQDCMAFCSEVEDVISMSLT 63
W PK+VGI+AL+IYFP V Q LE +DGV GKYT+GLGQ M FC++ ED+ S+ +T
Sbjct: 13 W-PKDVGIVALEIYFPSQYVDQAELEKYDGVDAGKYTIGLGQAKMGFCTDREDINSLCMT 71
Query: 64 VVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYG 123
VV +L+E+ + IGRLEVG+ET+IDKSKS+KT LMQ+FE+ GNTDIEG+D+TNACYG
Sbjct: 72 VVQNLMERNNLSYDCIGRLEVGTETIIDKSKSVKTNLMQLFEESGNTDIEGIDTTNACYG 131
Query: 124 GTAALFNCVNWVESASWDGRYGLVVCTDSAVYAEGPARPTGGAAAVAMLIGPDAPIAFES 183
GTAA+FN VNW+ES+SWDGRY LVV D AVYA G ARPTGG AVA+LIGP+AP+ FE
Sbjct: 132 GTAAVFNAVNWIESSSWDGRYALVVAGDIAVYATGNARPTGGVGAVALLIGPNAPLIFER 191
Query: 184 KLRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKYFCQKFE---KLEG--R 238
LRG+HM HAYDFYKP++ SEYP+VDGKLS CYL ALD CY +C+K + EG +
Sbjct: 192 GLRGTHMQHAYDFYKPDMLSEYPIVDGKLSIQCYLSALDRCYSVYCKKIHAQWQKEGNDK 251
Query: 239 QFSMLDVDYFVFHSPYNKLVQKSFARLFFNDFLRNASSVDEIAKEKLAPYSTLSDVESYQ 298
F++ D + +FHSPY KLVQKS AR+ NDFL + + L + + ++Y
Sbjct: 252 DFTLNDFGFMIFHSPYCKLVQKSLARMLLNDFLNDQNRDKNSIYSGLEAFGDVKLEDTYF 311
Query: 299 SRDLEKASQQVAKQLYDLKVQPSTLIPKQVGNMYTASLYAAFASLLHE-KHSSLEGKRVI 357
RD+EKA + + +L+ K + S L+ Q GNMYT+S+Y + AS+L + L GKR+
Sbjct: 312 DRDVEKAFMKASSELFSQKTKASLLVSNQNGNMYTSSVYGSLASVLAQYSPQQLAGKRIG 371
Query: 358 MFSYGSGLTATMFSLQLQEGHRPFS-LSNIV-KVMDVPGKLKLRHEFPPEKFVDIMKLME 415
+FSYGSGL AT++SL++ + P S L I + D+ +L R P+ F + MKL E
Sbjct: 372 VFSYGSGLAATLYSLKVTQDATPGSALDKITASLCDLKSRLDSRTGVAPDVFAENMKLRE 431
Query: 416 HRYGAKDFVTSKDSSLLSPGTCYLTEVDSMFRRFYAKKENTSNAATCENG 465
+ +++ L GT YL VD RR YA++ T N T + G
Sbjct: 432 DTHHLVNYIPQGSIDSLFEGTWYLVRVDEKHRRTYARRP-TPNDDTLDEG 480
|
|
| UNIPROTKB|F1M9Q5 Hmgcs2 "Hydroxymethylglutaryl-CoA synthase, mitochondrial" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 1158 (412.7 bits), Expect = 1.4e-117, P = 1.4e-117
Identities = 238/459 (51%), Positives = 305/459 (66%)
Query: 3 SWHPKNVGILALDIYFPPTCVLQEALEVHDGVSKGKYTVGLGQDCMAFCSEVEDVISMSL 62
+W PK+VGILAL++YFP V Q LE + V GKYTVGLGQ M FCS ED+ S+ L
Sbjct: 15 TW-PKDVGILALEVYFPAQYVDQTDLEKFNNVEAGKYTVGLGQTRMGFCSVQEDINSLCL 73
Query: 63 TVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACY 122
TVV L+E+ K+ +GRLEVG+ET+IDKSK++KT LM++F+ GNTDIEG+D+TNACY
Sbjct: 74 TVVQRLMERTKLPWDAVGRLEVGTETIIDKSKAVKTVLMELFQDSGNTDIEGIDTTNACY 133
Query: 123 GGTAALFNCVNWVESASWDGRYGLVVCTDSAVYAEGPARPTGGAAAVAMLIGPDAPIAFE 182
GGTA+LFN NW+ES+ WDGRY LVVC D AVY G ARPTGGA AVAMLIGP AP+ E
Sbjct: 134 GGTASLFNAANWMESSYWDGRYALVVCGDIAVYPSGNARPTGGAGAVAMLIGPKAPLVLE 193
Query: 183 SKLRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKYFCQKFE---KLEGRQ 239
LRG+HM +AYDFYKPNLASEYP+VDGKLS CYL ALD CY + +K + K G
Sbjct: 194 QGLRGTHMENAYDFYKPNLASEYPLVDGKLSIQCYLRALDRCYAAYRRKIQNQWKQAGNN 253
Query: 240 --FSMLDVDYFVFHSPYNKLVQKSFARLFFNDFLRNASSVDEIAKEKLAPYSTLSDVESY 297
F++ DV Y +FH+P+ K+VQKS ARL FNDFL ++S + L + L E+Y
Sbjct: 254 QPFTLDDVQYMIFHTPFCKMVQKSLARLMFNDFLSSSSDKQNNLYKGLEAFKGLKLEETY 313
Query: 298 QSRDLEKASQQVAKQLYDLKVQPSTLIPKQVGNMYTASLYAAFASLL-HEKHSSLEGKRV 356
++D++KA + + +++ K + S + GNMYT+SLY ASLL H L G R+
Sbjct: 314 TNKDVDKALLKASLDMFNKKTKASLYLSTNNGNMYTSSLYGCLASLLSHHSAQELAGSRI 373
Query: 357 IMFSYGSGLTATMFSLQLQEGHRPFS-LSNIVK-VMDVPGKLKLRHEFPPEKFVDIMKLM 414
FSYGSGL A+ FS ++ + P S L +V V D+P +L R PE+F +IM
Sbjct: 374 GAFSYGSGLAASFFSFRVSKDASPGSPLEKLVSSVSDLPKRLDSRRRMSPEEFTEIMNQR 433
Query: 415 EHRYGAKDFVTSKDSSLLSPGTCYLTEVDSMFRRFYAKK 453
E Y +F D+S L PGT YL VD M RR YA++
Sbjct: 434 EQFYHKVNFSPPGDTSNLFPGTWYLERVDEMHRRKYARR 472
|
|
| UNIPROTKB|P54868 HMGCS2 "Hydroxymethylglutaryl-CoA synthase, mitochondrial" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 1156 (412.0 bits), Expect = 2.3e-117, P = 2.3e-117
Identities = 235/459 (51%), Positives = 306/459 (66%)
Query: 3 SWHPKNVGILALDIYFPPTCVLQEALEVHDGVSKGKYTVGLGQDCMAFCSEVEDVISMSL 62
+W PK+VGILAL++YFP V Q LE ++ V GKYTVGLGQ M FCS ED+ S+ L
Sbjct: 49 TW-PKDVGILALEVYFPAQYVDQTDLEKYNNVEAGKYTVGLGQTRMGFCSVQEDINSLCL 107
Query: 63 TVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACY 122
TVV L+E+ ++ +GRLEVG+ET+IDKSK++KT LM++F+ GNTDIEG+D+TNACY
Sbjct: 108 TVVQRLMERIQLPWDSVGRLEVGTETIIDKSKAVKTVLMELFQDSGNTDIEGIDTTNACY 167
Query: 123 GGTAALFNCVNWVESASWDGRYGLVVCTDSAVYAEGPARPTGGAAAVAMLIGPDAPIAFE 182
GGTA+LFN NW+ES+SWDGRY +VVC D AVY G ARPTGGA AVAMLIGP AP+A E
Sbjct: 168 GGTASLFNAANWMESSSWDGRYAMVVCGDIAVYPSGNARPTGGAGAVAMLIGPKAPLALE 227
Query: 183 SKLRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKYFCQKFE---KLEG-- 237
LRG+HM + YDFYKPNLASEYP+VDGKLS CYL ALD CY + +K + K G
Sbjct: 228 RGLRGTHMENVYDFYKPNLASEYPIVDGKLSIQCYLRALDRCYTSYRKKIQNQWKQAGSD 287
Query: 238 RQFSMLDVDYFVFHSPYNKLVQKSFARLFFNDFLRNASSVDEIAKEKLAPYSTLSDVESY 297
R F++ D+ Y +FH+P+ K+VQKS ARL FNDFL +S + L + L ++Y
Sbjct: 288 RPFTLDDLQYMIFHTPFCKMVQKSLARLMFNDFLSASSDTQTSLYKGLEAFGGLKLEDTY 347
Query: 298 QSRDLEKASQQVAKQLYDLKVQPSTLIPKQVGNMYTASLYAAFASLL-HEKHSSLEGKRV 356
++DL+KA + ++ ++D K + S + GNMYT+SLY ASLL H L G R+
Sbjct: 348 TNKDLDKALLKASQDMFDKKTKASLYLSTHNGNMYTSSLYGCLASLLSHHSAQELAGSRI 407
Query: 357 IMFSYGSGLTATMFSLQLQEGHRPFS-LSNIVK-VMDVPGKLKLRHEFPPEKFVDIMKLM 414
FSYGSGL A+ FS ++ + P S L +V D+P +L R PE+F +IM
Sbjct: 408 GAFSYGSGLAASFFSFRVSQDAAPGSPLDKLVSSTSDLPKRLASRKCVSPEEFTEIMNQR 467
Query: 415 EHRYGAKDFVTSKDSSLLSPGTCYLTEVDSMFRRFYAKK 453
E Y +F D++ L PGT YL VD RR YA++
Sbjct: 468 EQFYHKVNFSPPGDTNSLFPGTWYLERVDEQHRRKYARR 506
|
|
| UNIPROTKB|F6RJG0 HMGCS1 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 1155 (411.6 bits), Expect = 3.0e-117, P = 3.0e-117
Identities = 237/470 (50%), Positives = 313/470 (66%)
Query: 4 WHPKNVGILALDIYFPPTCVLQEALEVHDGVSKGKYTVGLGQDCMAFCSEVEDVISMSLT 63
W PK+VGI+AL+IYFP V Q LE +DGV GKYT+GLGQ M FC++ ED+ S+ +T
Sbjct: 58 W-PKDVGIVALEIYFPSQYVDQAELEKYDGVDAGKYTIGLGQAKMGFCTDREDINSLCMT 116
Query: 64 VVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYG 123
VV +L+E+ + IGRLEVG+ET+IDKSKS+KT LMQ+FE+ GNTDIEG+D+TNACYG
Sbjct: 117 VVQNLMERNSLSYDCIGRLEVGTETIIDKSKSVKTNLMQLFEESGNTDIEGIDTTNACYG 176
Query: 124 GTAALFNCVNWVESASWDGRYGLVVCTDSAVYAEGPARPTGGAAAVAMLIGPDAPIAFES 183
GTAA+FN VNW+ES+SWDGRY LVV D AVYA G ARPTGG AVAMLIGP+AP+ FE
Sbjct: 177 GTAAVFNAVNWIESSSWDGRYALVVAGDIAVYATGNARPTGGVGAVAMLIGPNAPLIFER 236
Query: 184 KLRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKYFCQKFE---KLEG--R 238
LRG+HM HAYDFYKP++ SEYP+VDGKLS CYL ALD CY + +K + EG R
Sbjct: 237 GLRGTHMQHAYDFYKPDMLSEYPIVDGKLSIQCYLSALDRCYSVYRKKIRARWQKEGNDR 296
Query: 239 QFSMLDVDYFVFHSPYNKLVQKSFARLFFNDFLRNASSVDEIAKEKLAPYSTLSDVESYQ 298
F++ D + +FHSPY KLVQKS AR+ NDFL + + L + + ++Y
Sbjct: 297 DFTLNDFGFMIFHSPYCKLVQKSLARMLLNDFLNDQNRDKNSIYSGLEAFGDVKLEDTYF 356
Query: 299 SRDLEKASQQVAKQLYDLKVQPSTLIPKQVGNMYTASLYAAFASLLHE-KHSSLEGKRVI 357
RD+EKA + + +L++ K + S L+ Q GNMYT+S+Y + AS+L + L GKR+
Sbjct: 357 DRDVEKAFMKASSELFNQKTKASLLVSNQNGNMYTSSVYGSLASVLAQYSPQQLAGKRIG 416
Query: 358 MFSYGSGLTATMFSLQLQEGHRPFS-LSNIV-KVMDVPGKLKLRHEFPPEKFVDIMKLME 415
+FSYGSGL AT++SL++ + P S L IV + D+ +L R P+ F + MKL E
Sbjct: 417 VFSYGSGLAATLYSLKVTQDATPGSALDKIVASICDLKSRLDSRTCVAPDIFAENMKLRE 476
Query: 416 HRYGAKDFVTSKDSSLLSPGTCYLTEVDSMFRRFYAKKENTSNAATCENG 465
+ +++ L GT YL VD RR YA++ + N T G
Sbjct: 477 DTHHLANYIPQSSIDSLFEGTWYLVRVDEKHRRTYARRPSL-NDDTLNEG 525
|
|
| MGI|MGI:101939 Hmgcs2 "3-hydroxy-3-methylglutaryl-Coenzyme A synthase 2" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 1155 (411.6 bits), Expect = 3.0e-117, P = 3.0e-117
Identities = 238/458 (51%), Positives = 304/458 (66%)
Query: 3 SWHPKNVGILALDIYFPPTCVLQEALEVHDGVSKGKYTVGLGQDCMAFCSEVEDVISMSL 62
+W PK+VGILAL++YFP V Q LE + V GKYTVGLGQ M FCS ED+ S+ L
Sbjct: 49 TW-PKDVGILALEVYFPAQYVDQTDLEKFNNVEAGKYTVGLGQTRMGFCSVQEDINSLCL 107
Query: 63 TVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACY 122
TVV L+E+ K+ +GRLEVG+ET+IDKSK++KT LM++F+ GNTDIEG+D+TNACY
Sbjct: 108 TVVQRLMERTKLPWDAVGRLEVGTETIIDKSKAVKTVLMELFQDSGNTDIEGIDTTNACY 167
Query: 123 GGTAALFNCVNWVESASWDGRYGLVVCTDSAVYAEGPARPTGGAAAVAMLIGPDAPIAFE 182
GGTA+LFN NW+ES+ WDGRY LVVC D AVY G ARPTGGA AVAMLIGP AP+ E
Sbjct: 168 GGTASLFNAANWMESSYWDGRYALVVCGDIAVYPSGNARPTGGAGAVAMLIGPKAPLVLE 227
Query: 183 SKLRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKYFCQKFE---KLEGRQ 239
LRG+HM +AYDFYKPNLASEYP+VDGKLS CYL ALD CY + +K + K G
Sbjct: 228 QGLRGTHMENAYDFYKPNLASEYPLVDGKLSIQCYLRALDRCYAAYRKKIQNQWKQAGNN 287
Query: 240 --FSMLDVDYFVFHSPYNKLVQKSFARLFFNDFLRNASSVDEIAKEKLAPYSTLSDVESY 297
F++ DV Y +FH+P+ K+VQKS ARL FNDFL ++S + L + L E+Y
Sbjct: 288 QPFTLDDVQYMIFHTPFCKMVQKSLARLMFNDFLSSSSDKQNNLYKGLEAFRGLKLEETY 347
Query: 298 QSRDLEKASQQVAKQLYDLKVQPSTLIPKQVGNMYTASLYAAFASLL-HEKHSSLEGKRV 356
++D++KA + + +++ K + S + GNMYT+SLY ASLL H L G R+
Sbjct: 348 TNKDVDKALLKASLDMFNQKTKASLYLSTNNGNMYTSSLYGCLASLLSHHSAQELAGSRI 407
Query: 357 IMFSYGSGLTATMFSLQLQEGHRPFS-LSNIVK-VMDVPGKLKLRHEFPPEKFVDIMKLM 414
FSYGSGL A+ FS ++ + P S L +V V D+P +L R PE+F +IM
Sbjct: 408 GAFSYGSGLAASFFSFRVSKDASPGSPLEKLVSSVSDLPKRLDSRRRMSPEEFTEIMNQR 467
Query: 415 EHRYGAKDFVTSKDSSLLSPGTCYLTEVDSMFRRFYAK 452
E Y +F D+S L PGT YL VD M RR YA+
Sbjct: 468 EQFYHKVNFSPPGDTSNLFPGTWYLERVDEMHRRKYAR 505
|
|
| RGD|2804 Hmgcs2 "3-hydroxy-3-methylglutaryl-CoA synthase 2 (mitochondrial)" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 1153 (410.9 bits), Expect = 4.9e-117, P = 4.9e-117
Identities = 237/459 (51%), Positives = 304/459 (66%)
Query: 3 SWHPKNVGILALDIYFPPTCVLQEALEVHDGVSKGKYTVGLGQDCMAFCSEVEDVISMSL 62
+W PK+VGILAL++YFP V Q LE + V GKYTVGLGQ M FCS ED+ S+ L
Sbjct: 49 TW-PKDVGILALEVYFPAQYVDQTDLEKFNNVEAGKYTVGLGQTRMGFCSVQEDINSLCL 107
Query: 63 TVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACY 122
TVV L+E+ K+ +GRLEVG+ET+IDKSK++KT LM++F+ GNTDIEG+D+TNACY
Sbjct: 108 TVVQRLMERTKLPWDAVGRLEVGTETIIDKSKAVKTVLMELFQDSGNTDIEGIDTTNACY 167
Query: 123 GGTAALFNCVNWVESASWDGRYGLVVCTDSAVYAEGPARPTGGAAAVAMLIGPDAPIAFE 182
GGTA+LFN NW+ES+ WDGRY LVVC D AVY G RPTGGA AVAMLIGP AP+ E
Sbjct: 168 GGTASLFNAANWMESSYWDGRYALVVCGDIAVYPSGNPRPTGGAGAVAMLIGPKAPLVLE 227
Query: 183 SKLRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKYFCQKFE---KLEGRQ 239
LRG+HM +AYDFYKPNLASEYP+VDGKLS CYL ALD CY + +K + K G
Sbjct: 228 QGLRGTHMENAYDFYKPNLASEYPLVDGKLSIQCYLRALDRCYAAYRRKIQNQWKQAGNN 287
Query: 240 --FSMLDVDYFVFHSPYNKLVQKSFARLFFNDFLRNASSVDEIAKEKLAPYSTLSDVESY 297
F++ DV Y +FH+P+ K+VQKS ARL FNDFL ++S + L + L E+Y
Sbjct: 288 QPFTLDDVQYMIFHTPFCKMVQKSLARLMFNDFLSSSSDKQNNLYKGLEAFKGLKLEETY 347
Query: 298 QSRDLEKASQQVAKQLYDLKVQPSTLIPKQVGNMYTASLYAAFASLL-HEKHSSLEGKRV 356
++D++KA + + +++ K + S + GNMYT+SLY ASLL H L G R+
Sbjct: 348 TNKDVDKALLKASLDMFNKKTKASLYLSTNNGNMYTSSLYGCLASLLSHHSAQELAGSRI 407
Query: 357 IMFSYGSGLTATMFSLQLQEGHRPFS-LSNIVK-VMDVPGKLKLRHEFPPEKFVDIMKLM 414
FSYGSGL A+ FS ++ + P S L +V V D+P +L R PE+F +IM
Sbjct: 408 GAFSYGSGLAASFFSFRVSKDASPGSPLEKLVSSVSDLPKRLDSRRRMSPEEFTEIMNQR 467
Query: 415 EHRYGAKDFVTSKDSSLLSPGTCYLTEVDSMFRRFYAKK 453
E Y +F D+S L PGT YL VD M RR YA++
Sbjct: 468 EQFYHKVNFSPPGDTSNLFPGTWYLERVDEMHRRKYARR 506
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| P22791 | HMCS2_RAT | 2, ., 3, ., 3, ., 1, 0 | 0.5119 | 0.9635 | 0.8858 | yes | no |
| P54873 | HMCS_ARATH | 2, ., 3, ., 3, ., 1, 0 | 0.7986 | 0.9743 | 0.9869 | yes | no |
| P54872 | HMCSA_DICDI | 2, ., 3, ., 3, ., 1, 0 | 0.5110 | 0.9507 | 0.9211 | yes | no |
| P54874 | HMCS_SCHPO | 2, ., 3, ., 3, ., 1, 0 | 0.4593 | 0.9443 | 0.9865 | yes | no |
| P54871 | HMCS_CAEEL | 2, ., 3, ., 3, ., 1, 0 | 0.3784 | 0.9421 | 0.9523 | yes | no |
| P54839 | HMCS_YEAST | 2, ., 3, ., 3, ., 1, 0 | 0.4814 | 0.9379 | 0.8920 | yes | no |
| P54961 | HMCS1_BLAGE | 2, ., 3, ., 3, ., 1, 0 | 0.5153 | 0.9400 | 0.9690 | N/A | no |
| P54869 | HMCS2_MOUSE | 2, ., 3, ., 3, ., 1, 0 | 0.5152 | 0.9614 | 0.8838 | yes | no |
| P54868 | HMCS2_HUMAN | 2, ., 3, ., 3, ., 1, 0 | 0.5119 | 0.9635 | 0.8858 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 2.3.3 | 0.983 |
| 3rd Layer | 2.3.3.10 | 0.979 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 467 | |||
| PLN02577 | 459 | PLN02577, PLN02577, hydroxymethylglutaryl-CoA synt | 0.0 | |
| TIGR01833 | 457 | TIGR01833, HMG-CoA-S_euk, 3-hydroxy-3-methylglutar | 0.0 | |
| pfam08540 | 282 | pfam08540, HMG_CoA_synt_C, Hydroxymethylglutaryl-c | 1e-141 | |
| COG3425 | 377 | COG3425, PksG, 3-hydroxy-3-methylglutaryl CoA synt | 1e-100 | |
| pfam01154 | 171 | pfam01154, HMG_CoA_synt_N, Hydroxymethylglutaryl-c | 1e-93 | |
| cd00827 | 324 | cd00827, init_cond_enzymes, "initiating" condensin | 4e-84 | |
| TIGR01835 | 379 | TIGR01835, HMG-CoA-S_prok, 3-hydroxy-3-methylgluta | 1e-50 | |
| PRK04262 | 347 | PRK04262, PRK04262, hypothetical protein; Provisio | 1e-13 | |
| TIGR00748 | 345 | TIGR00748, HMG_CoA_syn_Arc, hydroxymethylglutaryl- | 9e-13 | |
| COG0332 | 323 | COG0332, FabH, 3-oxoacyl-[acyl-carrier-protein] | 3e-04 | |
| cd00830 | 320 | cd00830, KAS_III, Ketoacyl-acyl carrier protein sy | 0.001 |
| >gnl|CDD|178189 PLN02577, PLN02577, hydroxymethylglutaryl-CoA synthase | Back alignment and domain information |
|---|
Score = 911 bits (2356), Expect = 0.0
Identities = 375/458 (81%), Positives = 408/458 (89%), Gaps = 1/458 (0%)
Query: 6 PKNVGILALDIYFPPTCVLQEALEVHDGVSKGKYTVGLGQDCMAFCSEVEDVISMSLTVV 65
PKNVGILA+++YFPPTCV QEALE HDGVSKGKYT+GLGQDCMAFC++VEDVISMSLTVV
Sbjct: 2 PKNVGILAMEVYFPPTCVQQEALEAHDGVSKGKYTIGLGQDCMAFCTDVEDVISMSLTVV 61
Query: 66 TSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGT 125
SLLEKY IDP QIGRLEVGSETVIDKSKSIKTFLMQ+FE+ GNTDIEGVDSTNACYGGT
Sbjct: 62 KSLLEKYNIDPKQIGRLEVGSETVIDKSKSIKTFLMQLFEESGNTDIEGVDSTNACYGGT 121
Query: 126 AALFNCVNWVESASWDGRYGLVVCTDSAVYAEGPARPTGGAAAVAMLIGPDAPIAFESKL 185
AAL NCVNWVES+SWDGRYGLVV DSAVYAEGPARPTGGA AVAML+GP+API FESK
Sbjct: 122 AALLNCVNWVESSSWDGRYGLVVAADSAVYAEGPARPTGGAGAVAMLVGPNAPIVFESKY 181
Query: 186 RGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKYFCQKFEKLEGRQFSMLDV 245
RGSHM+H YDFYKP+LASEYPVVDGKLSQTCYLMALDSCYK FC+K+EKLEG+QFS+ D
Sbjct: 182 RGSHMAHVYDFYKPDLASEYPVVDGKLSQTCYLMALDSCYKRFCEKYEKLEGKQFSISDA 241
Query: 246 DYFVFHSPYNKLVQKSFARLFFNDFLRNASSVDEIAKEKLAPYSTLSDVESYQSRDLEKA 305
DYFVFH+PYNKLVQKSFARL +NDF RNASSVDE AKEKLAP++ LS ESYQ+RDLEK
Sbjct: 242 DYFVFHAPYNKLVQKSFARLVYNDFQRNASSVDEDAKEKLAPFAGLSSDESYQNRDLEKV 301
Query: 306 SQQVAKQLYDLKVQPSTLIPKQVGNMYTASLYAAFASLLHEKHSSLEGKRVIMFSYGSGL 365
SQQVAK LYD KVQP+TLIPKQVGNMYTASLYAA ASL+H KHS L GKR++MFSYGSGL
Sbjct: 302 SQQVAKPLYDAKVQPTTLIPKQVGNMYTASLYAALASLVHNKHSELAGKRILMFSYGSGL 361
Query: 366 TATMFSLQLQEGHRPFSLSNIVKVMDVPGKLKLRHEFPPEKFVDIMKLMEHRYGAKDFVT 425
TATMFSL+L EG PFSLSNI KVMDV KLK RHE PEKFV+ +KLMEHRYGAKDFV
Sbjct: 362 TATMFSLRLHEGQHPFSLSNIAKVMDVSEKLKSRHEVSPEKFVETLKLMEHRYGAKDFVP 421
Query: 426 SKDSSLLSPGTCYLTEVDSMFRRFYAKK-ENTSNAATC 462
SKD SLL+PGT YLTEVDS++RRFY +K N S A
Sbjct: 422 SKDVSLLAPGTYYLTEVDSLYRRFYDRKALNGSIANGH 459
|
Length = 459 |
| >gnl|CDD|233591 TIGR01833, HMG-CoA-S_euk, 3-hydroxy-3-methylglutaryl-CoA-synthase, eukaryotic clade | Back alignment and domain information |
|---|
Score = 728 bits (1881), Expect = 0.0
Identities = 276/456 (60%), Positives = 331/456 (72%), Gaps = 8/456 (1%)
Query: 6 PKNVGILALDIYFPPTCVLQEALEVHDGVSKGKYTVGLGQDCMAFCSEVEDVISMSLTVV 65
PK+VGILAL+IYFP V Q LE +DGVS GKYT+GLGQ M FC++ ED+ S+ LTVV
Sbjct: 2 PKDVGILALEIYFPSQYVDQAELEKYDGVSAGKYTIGLGQTKMGFCTDREDINSLCLTVV 61
Query: 66 TSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGT 125
+ L+E+Y ID QIGRLEVG+ET+IDKSKS+KT LMQ+FE+ GNTD+EG+D+TNACYGGT
Sbjct: 62 SKLMERYNIDYDQIGRLEVGTETIIDKSKSVKTVLMQLFEESGNTDVEGIDTTNACYGGT 121
Query: 126 AALFNCVNWVESASWDGRYGLVVCTDSAVYAEGPARPTGGAAAVAMLIGPDAPIAFESKL 185
AALFN +NW+ES+SWDGRY LVV D AVYA+G ARPTGGA AVAMLIGP+API FE L
Sbjct: 122 AALFNAINWIESSSWDGRYALVVAGDIAVYAKGNARPTGGAGAVAMLIGPNAPIVFERGL 181
Query: 186 RGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKYFCQKFEKLEG-----RQF 240
RGSHM HAYDFYKP+LASEYPVVDGKLS CYL ALD CYK +C+K EK G R+F
Sbjct: 182 RGSHMQHAYDFYKPDLASEYPVVDGKLSIQCYLSALDRCYKSYCKKIEKQWGKSGSDRKF 241
Query: 241 SMLDVDYFVFHSPYNKLVQKSFARLFFNDFLRNASSVDEIAKEKLAPYSTLSDVESYQSR 300
++ D DY +FHSPY KLVQKS ARL +NDFLRN SS D E L S L ++Y R
Sbjct: 242 TLDDFDYMIFHSPYCKLVQKSLARLLYNDFLRNPSSTDTSLYEGLEALSGLKLEDTYTDR 301
Query: 301 DLEKASQQVAKQLYDLKVQPSTLIPKQVGNMYTASLYAAFASLLHEKHSS-LEGKRVIMF 359
DLEKA + +K+L+D K +PS L+P QVGNMYTASLY ASLL K + L GKRV MF
Sbjct: 302 DLEKAFMKASKELFDKKTKPSLLVPTQVGNMYTASLYGCLASLLSSKSAQELAGKRVGMF 361
Query: 360 SYGSGLTATMFSLQLQEGHRPFSLSN--IVKVMDVPGKLKLRHEFPPEKFVDIMKLMEHR 417
SYGSGL A+MFSL++ + P S + I + D+ +L RH PE+F + M+L E
Sbjct: 362 SYGSGLAASMFSLRVSQDASPGSALDKLIASLSDLKNRLDSRHCVAPEEFEETMELREQA 421
Query: 418 YGAKDFVTSKDSSLLSPGTCYLTEVDSMFRRFYAKK 453
+ K+F L PGT YL VDS RR YA+K
Sbjct: 422 HHKKNFTPQGSIDSLFPGTWYLERVDSKHRRSYARK 457
|
Hydroxymethylglutaryl(HMG)-CoA synthase is the first step of isopentenyl pyrophosphate (IPP) biosynthesis via the mevalonate pathway. This pathway is found mainly in eukaryotes, but also in archaea and some bacteria. This model is specific for eukaryotes. Length = 457 |
| >gnl|CDD|219892 pfam08540, HMG_CoA_synt_C, Hydroxymethylglutaryl-coenzyme A synthase C terminal | Back alignment and domain information |
|---|
Score = 404 bits (1041), Expect = e-141
Identities = 156/282 (55%), Positives = 187/282 (66%), Gaps = 7/282 (2%)
Query: 179 IAFESKLRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKYFCQKFEKLE-- 236
I F+ LRGSHM HAYDFYKP+L SEYPVVDGKLS CYL ALDSCYK +C+K EK
Sbjct: 1 IVFDRGLRGSHMEHAYDFYKPDLTSEYPVVDGKLSLQCYLKALDSCYKNYCKKIEKQTKD 60
Query: 237 -GRQFSMLDVDYFVFHSPYNKLVQKSFARLFFNDFLRNASS-VDEIAKEKLAPYSTLSDV 294
G +F + D DY +FHSPY KLVQKS ARL +NDFLRN SS EKL L
Sbjct: 61 GGTKFGLDDFDYVIFHSPYCKLVQKSLARLLYNDFLRNPSSDKGNGVYEKLEALGGLKLE 120
Query: 295 ESYQSRDLEKASQQVAKQLYDLKVQPSTLIPKQVGNMYTASLYAAFASLL-HEKHSSLEG 353
+SY RDLEKA Q++K L+ K +PS L+P QVGNMYTASLYAA ASLL H L G
Sbjct: 121 DSYTDRDLEKAFMQLSKPLFKKKTKPSLLLPTQVGNMYTASLYAALASLLSHVSADELAG 180
Query: 354 KRVIMFSYGSGLTATMFSLQLQEGHRPFSL--SNIVKVMDVPGKLKLRHEFPPEKFVDIM 411
KR+ MFSYGSGL A++FSL++ + P S+ I KV+D+ KL RH PE+F + M
Sbjct: 181 KRIGMFSYGSGLAASLFSLRVSQDVSPGSILQKLITKVLDLKNKLDSRHCVSPEEFEETM 240
Query: 412 KLMEHRYGAKDFVTSKDSSLLSPGTCYLTEVDSMFRRFYAKK 453
+L E + K+F L PGT YLT VDS++RR YA+K
Sbjct: 241 ELREQAHHKKNFTPQGSIDSLFPGTYYLTNVDSLYRRSYARK 282
|
Length = 282 |
| >gnl|CDD|225959 COG3425, PksG, 3-hydroxy-3-methylglutaryl CoA synthase [Lipid metabolism] | Back alignment and domain information |
|---|
Score = 304 bits (780), Expect = e-100
Identities = 130/445 (29%), Positives = 196/445 (44%), Gaps = 73/445 (16%)
Query: 8 NVGILALDIYFPPTCVLQEALEVHDGVSKGKYTVGLGQDCMAFCSEVEDVISMSLTVVTS 67
+GI+ + Y P + E L GV K GLG + + ED ++M++ +
Sbjct: 2 MIGIVGIGAYIPRYRIKLEELARAWGVDPEKIKKGLGVEEKSVPPWDEDAVTMAVEAARN 61
Query: 68 LLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAA 127
L++ IDP++IG + VGSE+ D K T + + N D ACY GTAA
Sbjct: 62 ALKRADIDPSKIGAVIVGSESGPDAVKPTATIVAEALG--LNPSARAADVEFACYAGTAA 119
Query: 128 LFNCVNWVESASWDGRYGLVVCTDSAVYAEG-PARPTGGAAAVAMLIGPDAPIAFESKLR 186
L + WVES YGLV+ D+A YA G T GA AVA LIG + PI E +
Sbjct: 120 LQAAIGWVESGMIS--YGLVIGADTAQYAPGDALEYTAGAGAVAFLIGKNPPIVAEFEGT 177
Query: 187 GSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKYFCQKF-EKLEGRQFSMLDV 245
GS+ + DF++P+ YP VDG+ S+ Y +++ K + +K + D
Sbjct: 178 GSYTTDTPDFWRPDG-QPYPYVDGRFSEPAYFKHVENAAKGYMEKTGLSPD-------DF 229
Query: 246 DYFVFHSPYNKLVQKSFARLFFNDFLRNASSVDEIAKEKLAPYSTLSDVESYQSRDLEKA 305
DY VFH P K +K+ L F KE+
Sbjct: 230 DYIVFHQPNGKFPKKAAKSLGF--------------KEE--------------------- 254
Query: 306 SQQVAKQLYDLKVQPSTLIPKQVGNMYTASLYAAFASLLHEKHSSLEGKRVIMFSYGSGL 365
+V+P + P+++GN YT SL ASLL ++ L G R+++FSYGSG
Sbjct: 255 -----------QVKPGLVYPQRIGNTYTGSLLLGLASLL--DNAKLPGDRILLFSYGSGA 301
Query: 366 TATMFSLQLQEGHRPFSLSNIVKVMDVPGKLKLRHEFPPEKFVDIMKLMEHRYGAKDFVT 425
+ FS+ + +G + K + L+ R+ ++D + R +
Sbjct: 302 GSEAFSITVTDG-----IEERRKKLAPTVLLEQRNR---LSYIDYELYFKRRKKIRLG-- 351
Query: 426 SKDSSLLSPGTCYLTEVDSMFRRFY 450
KD+ G YL E+D FRR+
Sbjct: 352 -KDNEFYDSGDYYLEEIDDHFRRYR 375
|
Length = 377 |
| >gnl|CDD|110176 pfam01154, HMG_CoA_synt_N, Hydroxymethylglutaryl-coenzyme A synthase N terminal | Back alignment and domain information |
|---|
Score = 280 bits (718), Expect = 1e-93
Identities = 116/171 (67%), Positives = 141/171 (82%)
Query: 8 NVGILALDIYFPPTCVLQEALEVHDGVSKGKYTVGLGQDCMAFCSEVEDVISMSLTVVTS 67
+VGI+AL+IYFP V Q LE +DGVS GKYT+GLGQ M FC++ ED+ S+ LTVV
Sbjct: 1 DVGIVALEIYFPSQYVDQAELEKYDGVSAGKYTIGLGQTKMGFCTDREDINSLCLTVVQK 60
Query: 68 LLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAA 127
L+E+ +D IGRLEVG+ET+IDKSKS+KT LMQ+FE+ GNTDIEG+D+TNACYGGTAA
Sbjct: 61 LMERNNLDYDCIGRLEVGTETIIDKSKSVKTVLMQLFEESGNTDIEGIDTTNACYGGTAA 120
Query: 128 LFNCVNWVESASWDGRYGLVVCTDSAVYAEGPARPTGGAAAVAMLIGPDAP 178
LFN +NW+ES+SWDGRY LVV D A+YA+G ARPTGGA AVAMLIGP+AP
Sbjct: 121 LFNALNWIESSSWDGRYALVVAGDIAIYAKGNARPTGGAGAVAMLIGPNAP 171
|
Length = 171 |
| >gnl|CDD|238423 cd00827, init_cond_enzymes, "initiating" condensing enzymes are a subclass of decarboxylating condensing enzymes, including beta-ketoacyl [ACP] synthase, type III and polyketide synthases, type III, which include chalcone synthase and related enzymes | Back alignment and domain information |
|---|
Score = 261 bits (669), Expect = 4e-84
Identities = 122/371 (32%), Positives = 164/371 (44%), Gaps = 53/371 (14%)
Query: 8 NVGILALDIYFPPTCVLQEALEVHDGVSKGKYTVGLGQDCMAFCSEVEDVISMSLTVVTS 67
+VGI A+ Y P V E L GV GKYT G+GQ MA EDV +M++
Sbjct: 1 DVGIEAIGAYLPRYRVDNEELAEGLGVDPGKYTTGIGQRHMAGD--DEDVPTMAVEAARR 58
Query: 68 LLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAA 127
LE+ IDP IG L V +E+ IDK KS T+L ++ G T+ E D ACYGGTAA
Sbjct: 59 ALERAGIDPDDIGLLIVATESPIDKGKSAATYLAELL---GLTNAEAFDLKQACYGGTAA 115
Query: 128 LFNCVNWVESASWDGRYGLVVCTDSAVYAE---GPARPTGGAAAVAMLIGPDAPIAFESK 184
L N VES W RY LVV +D A Y PT G A AML+ + I +
Sbjct: 116 LQLAANLVESGPW--RYALVVASDIASYLLDEGSALEPTLGDGAAAMLVSRNPGILA-AG 172
Query: 185 LRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKYFCQKFEKLEGRQFSMLD 244
+ +H + + S YPV+DG + C L + + +
Sbjct: 173 IVSTHSTSDPGYDF----SPYPVMDGGYPKPCKL--------AYAIRLTAEPAGRA---- 216
Query: 245 VDYFVFHSPYNKLVQKSFARLFFNDFLRNASSVDEIAKEKLAPYSTLSDVESYQSRDLEK 304
+ H K+V+K+ R ++ + +Q K
Sbjct: 217 -VFEAAHKLIAKVVRKALDRAGLSE--------------------DIDYFVPHQPNGK-K 254
Query: 305 ASQQVAKQLYD--LKVQPSTLI-PKQVGNMYTASLYAAFASLLHEKHSSLEGKRVIMFSY 361
+ VAK+L K + I ++VGNMY AS+ ASLL E G RV++FSY
Sbjct: 255 ILEAVAKKLGGPPEKASQTRWILLRRVGNMYAASILLGLASLL-ESGKLKAGDRVLLFSY 313
Query: 362 GSGLTATMFSL 372
GSG TA F L
Sbjct: 314 GSGFTAEAFVL 324
|
They are characterized by the utlization of CoA substrate primers, as well as the nature of their active site residues. Length = 324 |
| >gnl|CDD|213655 TIGR01835, HMG-CoA-S_prok, 3-hydroxy-3-methylglutaryl CoA synthase, prokaryotic clade | Back alignment and domain information |
|---|
Score = 176 bits (447), Expect = 1e-50
Identities = 100/372 (26%), Positives = 160/372 (43%), Gaps = 51/372 (13%)
Query: 9 VGILALDIYFPPTCVLQEALEVHDGVSKGKYTVGLGQDCMAFCSEVEDVISMSLTVVTSL 68
+GI + + P + AL GV K+ +G+GQ MA ED+++M+ + +
Sbjct: 1 IGIDKISFFTPQNYLDMTALAEARGVDPEKFHIGIGQKKMAVPPIDEDIVTMAASAAKPI 60
Query: 69 LEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAAL 128
L++ D +I + G+E+ ID+SK+ ++ + + ACYG TAAL
Sbjct: 61 LDRN--DKQKIDMVIFGTESGIDQSKAAAVYVHGLLGLQPFC--RSFELKQACYGATAAL 116
Query: 129 FNCVNWVESASWDGRYGLVVCTDSAVYA-EGPARPTGGAAAVAMLIGPDAPIAFESKLRG 187
V + R LV+ +D A Y E P PT GA AVAML+ D + ++
Sbjct: 117 QMAKGHVALSP--DRKVLVIASDIAKYGLESPGEPTQGAGAVAMLVSADPKLLAINEDSV 174
Query: 188 SHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKYFCQKFEKLEGRQFSMLDVDY 247
+ DF++PN S +VDG+ S YL A ++ + + ++ S+ D
Sbjct: 175 LYTDDIMDFWRPN-YSTTALVDGQYSNEQYLNAFENAWNDYAKR------TGLSLADFAA 227
Query: 248 FVFHSPYNKLVQKSFARLFFNDFLRNASSVDEIAKEKLAPYSTLSDVESYQSRDLEKASQ 307
F FH P+ K+ K+ + L + ++ A
Sbjct: 228 FCFHVPFTKMGLKALRHI-------------------------LKKNYEDEDESVQNAYL 262
Query: 308 QVAKQLYDLKVQPSTLIPKQVGNMYTASLYAAFASLLHEKHSSLEGKRVIMFSYGSGLTA 367
+ S + ++VGN+YT SLY ASLL G ++ +FSYGSG A
Sbjct: 263 E------------SIIYNREVGNLYTGSLYLGLASLLENAFEDTTGDKIGLFSYGSGAVA 310
Query: 368 TMFSLQLQEGHR 379
FS L G+R
Sbjct: 311 EFFSGTLVAGYR 322
|
This clade of hydroxymethylglutaryl-CoA (HMG-CoA) synthases is found in a limited spectrum of mostly gram-positive bacteria which make isopentenyl pyrophosphate (IPP) via the mevalonate pathway. This pathway is found primarily in eukaryotes and archaea, but the bacterial homologs are distinct, having aparrently diverged after being laterally transferred from an early eukaryote. HMG-CoA synthase is the first step in the pathway and joins acetyl-CoA with acetoacetyl-CoA with the release of one molecule of CoA. The Borellia sequence may have resulted from a separate lateral transfer event. Length = 379 |
| >gnl|CDD|235266 PRK04262, PRK04262, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 71.5 bits (176), Expect = 1e-13
Identities = 86/327 (26%), Positives = 130/327 (39%), Gaps = 70/327 (21%)
Query: 55 EDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNT-DIE 113
ED ++++ + L++ IDP +IG + VGSE+ K T + E G T D+
Sbjct: 49 EDTATIAVEAARNALKRAGIDPKEIGAVYVGSESHPYAVKPTATI---VAEALGATPDLT 105
Query: 114 GVDSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDSAVYAEGPA-RPTGGAAAVAML 172
D AC GTAAL + V+S +Y L + D+A A G A T A A +
Sbjct: 106 AADLEFACKAGTAALQAAMGLVKSGM--IKYALAIGADTAQGAPGDALEYTAAAGGAAFI 163
Query: 173 IGPDAPIA-FESKLRGSHMSHAYDFYKPNLASEYPVVDGKL-SQTCYLMALDSCYKYFCQ 230
IG + IA E+ S+ + DF++ YP G+ + Y + S K
Sbjct: 164 IGKEEVIAEIEATY--SYTTDTPDFWRRE-GEPYPRHGGRFTGEPAYFKHIISAAK---G 217
Query: 231 KFEKLEGRQFSMLDVDYFVFHSPYNKLVQKSFARLFFNDFLRNASSVDEIAKEKLAPYST 290
EKL G + S D DY VFH P K + L F KE++ P
Sbjct: 218 LMEKL-GLKPS--DYDYAVFHQPNGKFPLRVAKMLGFT-------------KEQVKP--- 258
Query: 291 LSDVESYQSRDLEKASQQVAKQLYDLKVQPSTLIPKQVGNMYTASLYAAFASLL-HEKHS 349
L+ +GN Y+ S A++L K
Sbjct: 259 -------------------------------GLLTPYIGNTYSGSALLGLAAVLDVAK-- 285
Query: 350 SLEGKRVIMFSYGSGLTATMFSLQLQE 376
G R+++ S+GSG + FS+ + +
Sbjct: 286 --PGDRILVVSFGSGAGSDAFSITVTD 310
|
Length = 347 |
| >gnl|CDD|129831 TIGR00748, HMG_CoA_syn_Arc, hydroxymethylglutaryl-CoA synthase, putative | Back alignment and domain information |
|---|
Score = 68.8 bits (168), Expect = 9e-13
Identities = 81/325 (24%), Positives = 129/325 (39%), Gaps = 66/325 (20%)
Query: 55 EDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNT-DIE 113
ED ++ + + L++ KIDP IG + VGSE+ ++K + E G T D+
Sbjct: 48 EDTATIGVEAARNALKRAKIDPKDIGAVYVGSES---HPYAVKPTATIVAEAIGATPDLT 104
Query: 114 GVDSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDSAVYAEGPA-RPTGGAAAVAML 172
D AC GTA + C+ V S +YGL + D+A A G A T GA A +
Sbjct: 105 AADLEFACKAGTAGIQACMGLVASGM--IKYGLAIGADTAQGAPGDALEYTAGAGGAAYI 162
Query: 173 IGPDAPIAFESKLRGSHMSHAYDFYKPNLASEYPVVDGKLS-QTCYLMALDSCYKYFCQK 231
IG +A + S+ + DF++ YP G+ + + Y + + K +K
Sbjct: 163 IGEKNTVA-YFEGTYSYTTDTPDFWRRE-GEPYPRHGGRFTGEPAYFHHVVTAAKGLMEK 220
Query: 232 FEKLEGRQFSMLDVDYFVFHSPYNKLVQKSFARLFFNDFLRNASSVDEIAKEKLAPYSTL 291
+ D DY VFH P K F A+ + KE
Sbjct: 221 L------GLTPEDFDYAVFHQPNGK-------------FYLVAARMLGFPKE-------- 253
Query: 292 SDVESYQSRDLEKASQQVAKQLYDLKVQPSTLIPKQVGNMYTASLYAAFASLLHEKHSSL 351
+V+P L P+ +GN Y+ + +++L
Sbjct: 254 -------------------------QVKPGLLTPR-IGNTYSGATPVGLSAVLDIAEP-- 285
Query: 352 EGKRVIMFSYGSGLTATMFSLQLQE 376
G R++ SYGSG + FS+ +Q+
Sbjct: 286 -GDRILAVSYGSGAGSDAFSIVVQD 309
|
This family of archaeal proteins shows considerable homology and identical active site residues to the bacterial hydroxymethylglutaryl-CoA synthase (HMG-CoA synthase, modeled by TIGR01835) which is the second step in the mevalonate pathway of IPP biosynthesis. An enzyme from Pseudomonas fluorescens involved in the biosynthesis of the polyketide diacetyl-phloroglucinol is more closely related, but lacks the active site residues. In each of the genomes containing a member of this family there is no other recognized HMG-CoA synthase, although other elements of the mevalonate pathway are in evidence. The only archaeon currently sequenced which lacks a homolog in this pathway is Halobacterium, which _does_ contain a separate HMG-CoA synthase. Thus, although there is no experimental evidence supporting this name, the bioinformatics-based conclusion appears to be sound [Fatty acid and phospholipid metabolism, Biosynthesis]. Length = 345 |
| >gnl|CDD|223409 COG0332, FabH, 3-oxoacyl-[acyl-carrier-protein] | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 3e-04
Identities = 74/375 (19%), Positives = 110/375 (29%), Gaps = 79/375 (21%)
Query: 8 NVGILALDIYFPPTCVLQEALEVHDGVSKGKYTVGLGQDCMAFCSEVEDVISMSLTVVTS 67
N IL + Y P V LE S G ++ E +++
Sbjct: 3 NAKILGIGSYLPERVVTNADLEKRVDTSDEWIETRTGIRERRIAADDETTSDLAVEAARK 62
Query: 68 LLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAA 127
LE I P I + V + T S L+Q + G D AC G A
Sbjct: 63 ALEDAGISPDDIDLIIVATSTPDHLFPSTAC-LVQ--ARLGLGGAPAFDLQAACSGFLYA 119
Query: 128 LFNCVNWVESASWDGRYGLVVCTDSAVYAEGPA-RPTG---GAAAVAMLIGPDAP----I 179
L + S + LVV ++ R T G A A+++ +
Sbjct: 120 LSVADGLIRSGG--YKNVLVVGAETLSRILDWTDRDTCVLFGDGAGAVVLEATEDDNGIL 177
Query: 180 AFESKLRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKYFCQKFEK----- 234
+ GS Y + + G L + +K+ + K
Sbjct: 178 DTDLGSDGSQGDLLYLPGGGSATPKEESGGGLLVMDGREV-----FKFAVRAMPKAIEEV 232
Query: 235 LEGRQFSMLDVDYFVFHSPYNKLVQKSFARLFFNDFLRNASSVDEIAKEKLAPYSTLSDV 294
LE + D+D+FV H N ++ IAK+ P
Sbjct: 233 LEKAGLTPEDIDWFVPHQA-------------------NLRIIEAIAKKLGIP------- 266
Query: 295 ESYQSRDLEKASQQVAKQLYDLKVQPSTLIPKQVGNMYTASLYAAFASLLHE---KHSSL 351
EK V K GN AS+ A L E K
Sbjct: 267 -------EEKVVVTVDK----------------YGNTSAASIPLALDEALREGRIK---- 299
Query: 352 EGKRVIMFSYGSGLT 366
G V++ ++G GLT
Sbjct: 300 PGDLVLLEAFGGGLT 314
|
Length = 323 |
| >gnl|CDD|238426 cd00830, KAS_III, Ketoacyl-acyl carrier protein synthase III (KASIII) initiates the elongation in type II fatty acid synthase systems | Back alignment and domain information |
|---|
Score = 40.2 bits (95), Expect = 0.001
Identities = 57/331 (17%), Positives = 99/331 (29%), Gaps = 73/331 (22%)
Query: 50 FCSEVEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGN 109
E +++ LE ID I + V + T + + Q + G
Sbjct: 43 IADPGETTSDLAVEAAKKALEDAGIDADDIDLIIVATSTPDYLFPATACLV-Q--ARLGA 99
Query: 110 TDIEGVDSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTD--SAV--YAEGPARPTGG 165
+ D AC G L + S + LVV + S + + + G
Sbjct: 100 KNAAAFDINAACSGFLYGLSTAAGLIRSGG--AKNVLVVGAETLSRILDWTDRSTAVLFG 157
Query: 166 AAAVAMLIGPDAP----IAFESKLRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMAL 221
A A+++ + GS S A P S P D + +M
Sbjct: 158 DGAGAVVLEATEEDPGILDSVL---GSDGSGADLLTIPAGGSRSPFEDAEGGDPYLVMDG 214
Query: 222 DSCYKYFCQKFEK-----LEGRQFSMLDVDYFVFHSPYNKLVQKSFARLFFNDFLRNASS 276
+K+ + + LE + D+D+FV H N
Sbjct: 215 REVFKFAVRLMPESIEEALEKAGLTPDDIDWFVPHQA-------------------NLRI 255
Query: 277 VDEIAKE-KLAPYSTLSDVESYQSRDLEKASQQVAKQLYDLKVQPSTLIPKQVGNMYTAS 335
++ +AK L + +++ Y GN AS
Sbjct: 256 IEAVAKRLGLPEEKVVVNLDRY-------------------------------GNTSAAS 284
Query: 336 LYAAFASLLHEKHSSLEGKRVIMFSYGSGLT 366
+ A + E +G V++ +G+GLT
Sbjct: 285 IPLALDEAIEEGKLK-KGDLVLLLGFGAGLT 314
|
It is found in bacteria and plants. Elongation of fatty acids in the type II systems occurs by Claisen condensation of malonyl-acyl carrier protein (ACP) with acyl-ACP. KASIII initiates this process by specifically using acetyl-CoA over acyl-CoA. Length = 320 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 467 | |||
| KOG1393 | 462 | consensus Hydroxymethylglutaryl-CoA synthase [Lipi | 100.0 | |
| PLN02577 | 459 | hydroxymethylglutaryl-CoA synthase | 100.0 | |
| TIGR01833 | 454 | HMG-CoA-S_euk 3-hydroxy-3-methylglutaryl-CoA-synth | 100.0 | |
| COG3425 | 377 | PksG 3-hydroxy-3-methylglutaryl CoA synthase [Lipi | 100.0 | |
| TIGR01835 | 379 | HMG-CoA-S_prok 3-hydroxy-3-methylglutaryl CoA synt | 100.0 | |
| PF08540 | 282 | HMG_CoA_synt_C: Hydroxymethylglutaryl-coenzyme A s | 100.0 | |
| COG0332 | 323 | FabH 3-oxoacyl-[acyl-carrier-protein] | 100.0 | |
| TIGR00748 | 345 | HMG_CoA_syn_Arc hydroxymethylglutaryl-CoA synthase | 100.0 | |
| PRK04262 | 347 | hypothetical protein; Provisional | 100.0 | |
| PF01154 | 174 | HMG_CoA_synt_N: Hydroxymethylglutaryl-coenzyme A s | 100.0 | |
| PRK05963 | 326 | 3-oxoacyl-(acyl carrier protein) synthase II; Revi | 100.0 | |
| PRK12880 | 353 | 3-oxoacyl-(acyl carrier protein) synthase III; Rev | 100.0 | |
| PRK12879 | 325 | 3-oxoacyl-(acyl carrier protein) synthase III; Rev | 100.0 | |
| PRK09258 | 338 | 3-oxoacyl-(acyl carrier protein) synthase III; Rev | 100.0 | |
| CHL00203 | 326 | fabH 3-oxoacyl-acyl-carrier-protein synthase 3; Pr | 100.0 | |
| PRK07204 | 329 | 3-oxoacyl-(acyl carrier protein) synthase III; Rev | 100.0 | |
| PLN02326 | 379 | 3-oxoacyl-[acyl-carrier-protein] synthase III | 100.0 | |
| TIGR00747 | 318 | fabH 3-oxoacyl-(acyl-carrier-protein) synthase III | 100.0 | |
| PRK06840 | 339 | hypothetical protein; Validated | 100.0 | |
| cd00830 | 320 | KAS_III Ketoacyl-acyl carrier protein synthase III | 100.0 | |
| cd00831 | 361 | CHS_like Chalcone and stilbene synthases; plant-sp | 100.0 | |
| PLN03169 | 391 | chalcone synthase family protein; Provisional | 100.0 | |
| PRK09352 | 319 | 3-oxoacyl-(acyl carrier protein) synthase III; Rev | 100.0 | |
| PRK06816 | 378 | 3-oxoacyl-(acyl carrier protein) synthase III; Rev | 100.0 | |
| cd00827 | 324 | init_cond_enzymes "initiating" condensing enzymes | 100.0 | |
| PLN03171 | 399 | chalcone synthase-like protein; Provisional | 100.0 | |
| PLN03172 | 393 | chalcone synthase family protein; Provisional | 100.0 | |
| PLN03168 | 389 | chalcone synthase; Provisional | 100.0 | |
| PLN03170 | 401 | chalcone synthase; Provisional | 100.0 | |
| PLN03173 | 391 | chalcone synthase; Provisional | 100.0 | |
| PRK07515 | 372 | 3-oxoacyl-(acyl carrier protein) synthase III; Rev | 100.0 | |
| PLN02377 | 502 | 3-ketoacyl-CoA synthase | 100.0 | |
| PLN02854 | 521 | 3-ketoacyl-CoA synthase | 100.0 | |
| PLN02932 | 478 | 3-ketoacyl-CoA synthase | 100.0 | |
| PLN02192 | 511 | 3-ketoacyl-CoA synthase | 100.0 | |
| COG3424 | 356 | BcsA Predicted naringenin-chalcone synthase [Secon | 100.0 | |
| PLN00415 | 466 | 3-ketoacyl-CoA synthase | 100.0 | |
| cd00327 | 254 | cond_enzymes Condensing enzymes; Family of enzymes | 99.94 | |
| cd00825 | 332 | decarbox_cond_enzymes decarboxylating condensing e | 99.9 | |
| PF00195 | 226 | Chal_sti_synt_N: Chalcone and stilbene synthases, | 99.89 | |
| PF08392 | 290 | FAE1_CUT1_RppA: FAE1/Type III polyketide synthase- | 99.75 | |
| PRK06147 | 348 | 3-oxoacyl-(acyl carrier protein) synthase; Validat | 99.71 | |
| PF08541 | 90 | ACP_syn_III_C: 3-Oxoacyl-[acyl-carrier-protein (AC | 99.68 | |
| TIGR02845 | 327 | spore_V_AD stage V sporulation protein AD. Bacillu | 99.63 | |
| PRK08304 | 337 | stage V sporulation protein AD; Validated | 99.55 | |
| cd00834 | 406 | KAS_I_II Beta-ketoacyl-acyl carrier protein (ACP) | 99.44 | |
| cd00829 | 375 | SCP-x_thiolase Thiolase domain associated with ste | 99.37 | |
| smart00825 | 424 | PKS_KS Beta-ketoacyl synthase. The structure of be | 99.36 | |
| PRK06064 | 389 | acetyl-CoA acetyltransferase; Provisional | 99.35 | |
| PRK12404 | 334 | stage V sporulation protein AD; Provisional | 99.28 | |
| cd00751 | 386 | thiolase Thiolase are ubiquitous enzymes that cata | 99.27 | |
| TIGR01930 | 386 | AcCoA-C-Actrans acetyl-CoA acetyltransferases. Thi | 99.23 | |
| PRK12578 | 385 | acetyl-CoA acetyltransferase; Provisional | 99.21 | |
| PRK08313 | 386 | acetyl-CoA acetyltransferase; Provisional | 99.19 | |
| PF08545 | 80 | ACP_syn_III: 3-Oxoacyl-[acyl-carrier-protein (ACP) | 99.18 | |
| PRK05656 | 393 | acetyl-CoA acetyltransferase; Provisional | 99.18 | |
| PRK06501 | 425 | 3-oxoacyl-(acyl carrier protein) synthase II; Revi | 99.18 | |
| PF02797 | 151 | Chal_sti_synt_C: Chalcone and stilbene synthases, | 99.18 | |
| cd00833 | 421 | PKS polyketide synthases (PKSs) polymerize simple | 99.18 | |
| PRK08235 | 393 | acetyl-CoA acetyltransferase; Provisional | 99.15 | |
| PRK09051 | 394 | beta-ketothiolase; Provisional | 99.12 | |
| cd00828 | 407 | elong_cond_enzymes "elongating" condensing enzymes | 99.11 | |
| PRK06059 | 399 | lipid-transfer protein; Provisional | 99.11 | |
| PRK06205 | 404 | acetyl-CoA acetyltransferase; Provisional | 99.11 | |
| PRK07108 | 392 | acetyl-CoA acetyltransferase; Provisional | 99.1 | |
| TIGR03150 | 407 | fabF beta-ketoacyl-acyl-carrier-protein synthase I | 99.1 | |
| PRK05790 | 393 | putative acyltransferase; Provisional | 99.08 | |
| PRK09052 | 399 | acetyl-CoA acetyltransferase; Provisional | 99.08 | |
| PRK08170 | 426 | acetyl-CoA acetyltransferase; Provisional | 99.05 | |
| PRK08242 | 402 | acetyl-CoA acetyltransferase; Validated | 99.05 | |
| PRK06065 | 392 | acetyl-CoA acetyltransferase; Provisional | 99.02 | |
| cd00826 | 393 | nondecarbox_cond_enzymes nondecarboxylating conden | 98.99 | |
| PRK06954 | 397 | acetyl-CoA acetyltransferase; Provisional | 98.97 | |
| PRK06158 | 384 | thiolase; Provisional | 98.95 | |
| PRK07103 | 410 | polyketide beta-ketoacyl:acyl carrier protein synt | 98.95 | |
| PRK06289 | 403 | acetyl-CoA acetyltransferase; Provisional | 98.92 | |
| PRK07516 | 389 | acetyl-CoA acetyltransferase; Provisional | 98.92 | |
| PF00108 | 264 | Thiolase_N: Thiolase, N-terminal domain; InterPro: | 98.9 | |
| PRK07314 | 411 | 3-oxoacyl-(acyl carrier protein) synthase II; Revi | 98.87 | |
| PRK05952 | 381 | 3-oxoacyl-(acyl carrier protein) synthase II; Revi | 98.87 | |
| PRK08722 | 414 | 3-oxoacyl-(acyl carrier protein) synthase II; Revi | 98.85 | |
| PLN02287 | 452 | 3-ketoacyl-CoA thiolase | 98.83 | |
| PRK06333 | 424 | 3-oxoacyl-(acyl carrier protein) synthase II; Revi | 98.82 | |
| PRK07851 | 406 | acetyl-CoA acetyltransferase; Provisional | 98.81 | |
| PRK07661 | 391 | acetyl-CoA acetyltransferase; Provisional | 98.8 | |
| PLN02836 | 437 | 3-oxoacyl-[acyl-carrier-protein] synthase | 98.8 | |
| PRK09185 | 392 | 3-oxoacyl-(acyl carrier protein) synthase I; Revie | 98.8 | |
| PTZ00050 | 421 | 3-oxoacyl-acyl carrier protein synthase; Provision | 98.8 | |
| PRK08439 | 406 | 3-oxoacyl-(acyl carrier protein) synthase II; Revi | 98.78 | |
| PRK06445 | 394 | acetyl-CoA acetyltransferase; Provisional | 98.76 | |
| PRK08256 | 391 | lipid-transfer protein; Provisional | 98.76 | |
| PRK06157 | 398 | acetyl-CoA acetyltransferase; Validated | 98.75 | |
| PRK08963 | 428 | fadI 3-ketoacyl-CoA thiolase; Reviewed | 98.71 | |
| PRK09116 | 405 | 3-oxoacyl-(acyl carrier protein) synthase II; Revi | 98.69 | |
| PRK06366 | 388 | acetyl-CoA acetyltransferase; Provisional | 98.68 | |
| cd00832 | 399 | CLF Chain-length factor (CLF) is a factor required | 98.68 | |
| PRK06365 | 430 | acetyl-CoA acetyltransferase; Provisional | 98.65 | |
| PRK08131 | 401 | acetyl-CoA acetyltransferase; Provisional | 98.63 | |
| PLN02644 | 394 | acetyl-CoA C-acetyltransferase | 98.62 | |
| PRK07850 | 387 | acetyl-CoA acetyltransferase; Provisional | 98.6 | |
| PRK13359 | 400 | beta-ketoadipyl CoA thiolase; Provisional | 98.58 | |
| PRK06633 | 392 | acetyl-CoA acetyltransferase; Provisional | 98.58 | |
| TIGR02446 | 430 | FadI fatty oxidation complex, beta subunit FadI. T | 98.57 | |
| PRK09050 | 401 | beta-ketoadipyl CoA thiolase; Validated | 98.57 | |
| PTZ00455 | 438 | 3-ketoacyl-CoA thiolase; Provisional | 98.55 | |
| PRK07967 | 406 | 3-oxoacyl-(acyl carrier protein) synthase I; Revie | 98.55 | |
| PLN02787 | 540 | 3-oxoacyl-[acyl-carrier-protein] synthase II | 98.54 | |
| TIGR02430 | 400 | pcaF beta-ketoadipyl CoA thiolase. Members of this | 98.52 | |
| PRK06504 | 390 | acetyl-CoA acetyltransferase; Provisional | 98.5 | |
| PRK06519 | 398 | 3-oxoacyl-(acyl carrier protein) synthase II; Revi | 98.47 | |
| PRK08142 | 388 | acetyl-CoA acetyltransferase; Provisional | 98.46 | |
| PRK07801 | 382 | acetyl-CoA acetyltransferase; Provisional | 98.46 | |
| PRK08947 | 387 | fadA 3-ketoacyl-CoA thiolase; Reviewed | 98.45 | |
| PRK07910 | 418 | 3-oxoacyl-(acyl carrier protein) synthase II; Revi | 98.45 | |
| PRK14691 | 342 | 3-oxoacyl-(acyl carrier protein) synthase II; Prov | 98.44 | |
| PRK09268 | 427 | acetyl-CoA acetyltransferase; Provisional | 98.44 | |
| TIGR02445 | 385 | fadA fatty oxidation complex, beta subunit FadA. T | 98.36 | |
| PRK08257 | 498 | acetyl-CoA acetyltransferase; Validated | 98.34 | |
| PRK07855 | 386 | lipid-transfer protein; Provisional | 98.33 | |
| PRK06066 | 385 | acetyl-CoA acetyltransferase; Provisional | 98.27 | |
| PF00109 | 254 | ketoacyl-synt: Beta-ketoacyl synthase, N-terminal | 98.24 | |
| PF07451 | 329 | SpoVAD: Stage V sporulation protein AD (SpoVAD); I | 98.16 | |
| PRK06025 | 417 | acetyl-CoA acetyltransferase; Provisional | 98.15 | |
| PRK06690 | 361 | acetyl-CoA acetyltransferase; Provisional | 97.99 | |
| TIGR02813 | 2582 | omega_3_PfaA polyketide-type polyunsaturated fatty | 97.98 | |
| PRK07937 | 352 | lipid-transfer protein; Provisional | 97.97 | |
| KOG1406 | 408 | consensus Peroxisomal 3-ketoacyl-CoA-thiolase P-44 | 97.79 | |
| COG0304 | 412 | FabB 3-oxoacyl-(acyl-carrier-protein) synthase [Li | 97.7 | |
| COG0183 | 392 | PaaJ Acetyl-CoA acetyltransferase [Lipid metabolis | 97.2 | |
| COG3321 | 1061 | Polyketide synthase modules and related proteins [ | 96.82 | |
| PF13723 | 218 | Ketoacyl-synt_2: Beta-ketoacyl synthase, N-termina | 96.13 | |
| KOG1391 | 396 | consensus Acetyl-CoA acetyltransferase [Lipid tran | 96.1 | |
| KOG1394 | 440 | consensus 3-oxoacyl-(acyl-carrier-protein) synthas | 95.81 | |
| KOG1390 | 396 | consensus Acetyl-CoA acetyltransferase [Lipid tran | 95.6 | |
| PRK06025 | 417 | acetyl-CoA acetyltransferase; Provisional | 95.36 | |
| KOG1392 | 465 | consensus Acetyl-CoA acetyltransferase [Lipid tran | 94.96 | |
| PRK07850 | 387 | acetyl-CoA acetyltransferase; Provisional | 94.18 | |
| PRK13359 | 400 | beta-ketoadipyl CoA thiolase; Provisional | 93.47 | |
| PF08541 | 90 | ACP_syn_III_C: 3-Oxoacyl-[acyl-carrier-protein (AC | 93.46 | |
| TIGR02430 | 400 | pcaF beta-ketoadipyl CoA thiolase. Members of this | 93.05 | |
| PRK06205 | 404 | acetyl-CoA acetyltransferase; Provisional | 92.82 | |
| cd00751 | 386 | thiolase Thiolase are ubiquitous enzymes that cata | 92.66 | |
| KOG1202 | 2376 | consensus Animal-type fatty acid synthase and rela | 92.54 | |
| KOG1389 | 435 | consensus 3-oxoacyl CoA thiolase [Lipid transport | 92.5 | |
| PRK08242 | 402 | acetyl-CoA acetyltransferase; Validated | 92.38 | |
| PRK06366 | 388 | acetyl-CoA acetyltransferase; Provisional | 92.13 | |
| PRK09051 | 394 | beta-ketothiolase; Provisional | 91.67 | |
| PRK09050 | 401 | beta-ketoadipyl CoA thiolase; Validated | 91.64 | |
| PRK06147 | 348 | 3-oxoacyl-(acyl carrier protein) synthase; Validat | 91.16 | |
| PRK07661 | 391 | acetyl-CoA acetyltransferase; Provisional | 91.08 | |
| PRK08963 | 428 | fadI 3-ketoacyl-CoA thiolase; Reviewed | 90.96 | |
| PRK09052 | 399 | acetyl-CoA acetyltransferase; Provisional | 90.74 | |
| PRK05790 | 393 | putative acyltransferase; Provisional | 90.56 | |
| TIGR02445 | 385 | fadA fatty oxidation complex, beta subunit FadA. T | 90.48 | |
| TIGR01930 | 386 | AcCoA-C-Actrans acetyl-CoA acetyltransferases. Thi | 90.28 | |
| PF02803 | 123 | Thiolase_C: Thiolase, C-terminal domain; InterPro: | 90.15 | |
| PRK05656 | 393 | acetyl-CoA acetyltransferase; Provisional | 90.05 | |
| TIGR00748 | 345 | HMG_CoA_syn_Arc hydroxymethylglutaryl-CoA synthase | 89.48 | |
| PLN02644 | 394 | acetyl-CoA C-acetyltransferase | 89.34 | |
| PRK08235 | 393 | acetyl-CoA acetyltransferase; Provisional | 88.17 | |
| PLN02287 | 452 | 3-ketoacyl-CoA thiolase | 87.9 | |
| PRK06690 | 361 | acetyl-CoA acetyltransferase; Provisional | 87.85 | |
| PRK07851 | 406 | acetyl-CoA acetyltransferase; Provisional | 87.62 | |
| PRK08256 | 391 | lipid-transfer protein; Provisional | 86.72 | |
| PRK06816 | 378 | 3-oxoacyl-(acyl carrier protein) synthase III; Rev | 86.62 | |
| PRK06504 | 390 | acetyl-CoA acetyltransferase; Provisional | 86.08 | |
| PRK08947 | 387 | fadA 3-ketoacyl-CoA thiolase; Reviewed | 85.25 | |
| PRK06445 | 394 | acetyl-CoA acetyltransferase; Provisional | 85.2 | |
| PRK07108 | 392 | acetyl-CoA acetyltransferase; Provisional | 85.05 | |
| PRK12879 | 325 | 3-oxoacyl-(acyl carrier protein) synthase III; Rev | 84.53 | |
| CHL00203 | 326 | fabH 3-oxoacyl-acyl-carrier-protein synthase 3; Pr | 84.25 | |
| PRK07204 | 329 | 3-oxoacyl-(acyl carrier protein) synthase III; Rev | 84.25 | |
| cd00327 | 254 | cond_enzymes Condensing enzymes; Family of enzymes | 84.21 | |
| PRK06633 | 392 | acetyl-CoA acetyltransferase; Provisional | 83.75 | |
| PRK09268 | 427 | acetyl-CoA acetyltransferase; Provisional | 83.71 | |
| PRK08257 | 498 | acetyl-CoA acetyltransferase; Validated | 83.66 | |
| cd00825 | 332 | decarbox_cond_enzymes decarboxylating condensing e | 83.12 | |
| PRK09258 | 338 | 3-oxoacyl-(acyl carrier protein) synthase III; Rev | 82.9 | |
| PRK06954 | 397 | acetyl-CoA acetyltransferase; Provisional | 82.18 | |
| PRK07910 | 418 | 3-oxoacyl-(acyl carrier protein) synthase II; Revi | 81.23 | |
| PRK06840 | 339 | hypothetical protein; Validated | 81.23 | |
| COG3425 | 377 | PksG 3-hydroxy-3-methylglutaryl CoA synthase [Lipi | 80.57 | |
| PRK04262 | 347 | hypothetical protein; Provisional | 80.44 | |
| PRK07515 | 372 | 3-oxoacyl-(acyl carrier protein) synthase III; Rev | 80.14 |
| >KOG1393 consensus Hydroxymethylglutaryl-CoA synthase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-105 Score=774.35 Aligned_cols=454 Identities=58% Similarity=0.932 Sum_probs=421.2
Q ss_pred CCCCCceeEEeEEEEecCCceeehhHHhhhhCCCcCeeEEeccceEeeccCCCCCHHHHHHHHHHHHHHHcCCCcCCcCE
Q 012253 2 TSWHPKNVGILALDIYFPPTCVLQEALEVHDGVSKGKYTVGLGQDCMAFCSEVEDVISMSLTVVTSLLEKYKIDPTQIGR 81 (467)
Q Consensus 2 ~~~~~~~vgI~ai~~y~P~~~v~~~el~~~~g~~~~k~~~Gig~r~~av~~~~Ed~~~ma~~Aa~~aL~~agi~~~~Id~ 81 (467)
++.+|.+|||.+|.+|+|.++|+|+||+++.|++.+||++|+||.+|+||.+.||+.+|+.+++++++++.+++++.|++
T Consensus 5 ~~~~p~dvGI~aieiyfP~~yV~Q~elEk~d~vs~gKytIGLGq~~MgfcsdrEDi~Sl~ltvvs~Lmery~i~~~~IGR 84 (462)
T KOG1393|consen 5 ASNWPKDVGIIAIEIYFPSQYVDQEELEKFDGVSAGKYTIGLGQTQMGFCSDREDIISLSLTVVSRLMERYNIDPDSIGR 84 (462)
T ss_pred cccCccccceeEEEEEcCccccChhhHhhcCCccccceEeccCcceecccCchhhhhhhhHHHHHHHHHHhCCChhhcce
Confidence 45568899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeccCCCCCCcHHHHHHHHhcccCCCCeeEEeeCCcChHHHHHHHHHHHHHHhCCCCCCEEEEEEeecccccCCCCC
Q 012253 82 LEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDSAVYAEGPAR 161 (467)
Q Consensus 82 Li~~Tes~~~~~ps~a~~v~~~Lgl~G~~~~~~~di~~aC~gg~~AL~~A~~~l~a~~~~~~~aLVV~sD~~~y~~~~~~ 161 (467)
|.|||||.+|.+||+++.|+++|+.+|+.+++++|..||||||++||.+|++||++..||||.|||||+|++.|..++++
T Consensus 85 LEVGTETiiDKSKSVKt~LMqLF~~sgNtdIEGiDttnACYGGtaALfnavnWiESssWDGr~aivV~gDIAvY~~G~aR 164 (462)
T KOG1393|consen 85 LEVGTETIIDKSKSVKTVLMQLFEESGNTDIEGIDTTNACYGGTAALFNAVNWIESSSWDGRYAIVVCGDIAVYAKGNAR 164 (462)
T ss_pred EEecceeccccchHHHHHHHHHhhhcCCCccccccccccccccHHHHHHHhhhhhhcccCCceeEEEEeeEEEecCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccceeEEEecCCCCceeecccccccccCcccccccCCCCCCceecCcchHHHHHHHHHHHHHHHHHHHHhh--hcCC
Q 012253 162 PTGGAAAVAMLIGPDAPIAFESKLRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKYFCQKFEKL--EGRQ 239 (467)
Q Consensus 162 ~t~GdGAvA~Ll~~~~~~~~~~~~~~~~~~~~~df~~p~~~~~~~~vdG~~s~~~y~~a~~~~~~~~~~~~~~~--~~~~ 239 (467)
||+|+|||||||+|++++.|+++++++||++.||||+|+..++||+|||++|++||+.|++.||..|++++... ...+
T Consensus 165 pTGGAgAVAmLIgPnApi~ferglr~thM~hayDFyKPdl~SEyPvVDGklSi~cYl~Ald~cY~~~~kK~~~~~~~~~~ 244 (462)
T KOG1393|consen 165 PTGGAGAVAMLIGPNAPIIFERGLRATHMQHAYDFYKPDLLSEYPVVDGKLSIQCYLSALDRCYTVYRKKIAAQWQKSGS 244 (462)
T ss_pred CCCCcceEEEEEcCCCceEecccchhhhhhhhhhccCCCCCCcCceecCeehHHHHHHHHHHHHHHHHHHHHHHhccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988532 1124
Q ss_pred CCccccceeccCCchHHHHHHHHHhhhhhhhccccCchhhHHhhhcCCCCCCCcchhhhhhhHHHHHHHHHHHHhhhhcC
Q 012253 240 FSMLDVDYFVFHSPYNKLVQKSFARLFFNDFLRNASSVDEIAKEKLAPYSTLSDVESYQSRDLEKASQQVAKQLYDLKVQ 319 (467)
Q Consensus 240 ~~~~d~d~~i~H~p~~k~~~k~~~~l~~~~~~~~~~~~~~~~~~~l~~~~g~~~e~~~~~~~~~k~~~~~~~~~~~~~~~ 319 (467)
..+++||+++||.|++||++|.+.+|+|+||..++....+.. .++ ..+..+++|+||++||++++++++.|.+|+.
T Consensus 245 ~~l~~fdy~ifHsP~cKlvqKs~arl~ynDf~~~~~~~~~~~--~~~--~~~~l~~s~~dr~~ek~~~~~s~~~~~~Kt~ 320 (462)
T KOG1393|consen 245 DNLNSFDYIIFHSPYCKLVQKSLARLLYNDFLLNPSQLPESA--GLE--STLKLDESYTDRDLEKAFIKISKPIFKKKTK 320 (462)
T ss_pred cccccCCeEEEeCchhhhHHHHHHHhhhhhhhhccccccccc--ccc--ccccccccccchHHHHHHHHHhHHHHHhhcc
Confidence 557899999999999999999999999999998766432111 111 4688899999999999999999999999999
Q ss_pred CCcccccccCccccchHHHHHHHHHhhcC-cCCCCCEEEEEEeccccceeeEEEEEecCCCCcchhhhhhcCChHHHhcc
Q 012253 320 PSTLIPKQVGNMYTASLYAAFASLLHEKH-SSLEGKRVIMFSYGSGLTATMFSLQLQEGHRPFSLSNIVKVMDVPGKLKL 398 (467)
Q Consensus 320 ~s~~~~~~~GN~~taS~~l~L~~~l~~~~-~~~~G~~ill~syGsG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 398 (467)
||+.+++++|||||+|+|.+|+++|.... ....|+||+|||||||+++++|++++..+.++ ..+.+....++.+||++
T Consensus 321 ~sl~~~~~~GNmYTaSly~~l~sll~~~~~d~l~Gkrig~FSYGSGlAAs~fs~~v~~da~p-~~k~~~~~~d~~~rL~~ 399 (462)
T KOG1393|consen 321 PSLLAPRRNGNMYTASLYASLASLLSAVPADELAGKRIGMFSYGSGLAASMFSLRVTQDATP-LDKIIASLTDLKKRLDS 399 (462)
T ss_pred ceeEeeccCCccccHHHHHHHHHHHhccchhhhhccEEEEEeecCcchhheEEEEecCCCCc-hhhhhHhhhhHHHHhhh
Confidence 99999999999999999999999999732 23689999999999999999999999974444 23345567799999999
Q ss_pred cccCChHHHHHHHHHHHHhcCCCCCccCCCCCCcCCCcEEEEeeCCCCceEEeeecCCCCcc
Q 012253 399 RHEFPPEKFVDIMKLMEHRYGAKDFVTSKDSSLLSPGTCYLTEVDSMFRRFYAKKENTSNAA 460 (467)
Q Consensus 399 r~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~R~Y~~~~~~~~~~ 460 (467)
|+.++|+||++.|++||+.|++++|.|.+++++++||+|||++||++|||.|.+++.+.|+.
T Consensus 400 R~~~tPe~F~e~melre~~~~~~n~~p~gs~~~Lf~gtyYL~~vd~~~RRsY~~~~~~n~~~ 461 (462)
T KOG1393|consen 400 RKCVTPEEFTEIMELREDTHHKVNFVPQGSIESLFPGTYYLKRVDELHRRSYTLKPEPNNVT 461 (462)
T ss_pred ccccCHHHHHHHHHhhhhhcccccCCCCCchhhcCCCceehhhhhHHhhhccccCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999888764
|
|
| >PLN02577 hydroxymethylglutaryl-CoA synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-97 Score=767.88 Aligned_cols=452 Identities=82% Similarity=1.288 Sum_probs=412.2
Q ss_pred CCceeEEeEEEEecCCceeehhHHhhhhCCCcCeeEEeccceEeeccCCCCCHHHHHHHHHHHHHHHcCCCcCCcCEEEE
Q 012253 5 HPKNVGILALDIYFPPTCVLQEALEVHDGVSKGKYTVGLGQDCMAFCSEVEDVISMSLTVVTSLLEKYKIDPTQIGRLEV 84 (467)
Q Consensus 5 ~~~~vgI~ai~~y~P~~~v~~~el~~~~g~~~~k~~~Gig~r~~av~~~~Ed~~~ma~~Aa~~aL~~agi~~~~Id~Li~ 84 (467)
+|++|||.++++|+|+++|+++||++.+|.+++|+++||++|+|++++++||+++||++||++||+++|++|++||+||+
T Consensus 1 ~~~~vgI~gig~Y~P~~~v~n~eLa~~~g~~~~~~~~GI~~r~~ava~~~Ed~~tmA~~AA~~aL~~agid~~~Idlliv 80 (459)
T PLN02577 1 MPKNVGILAMEVYFPPTCVQQEALEAHDGVSKGKYTIGLGQDCMAFCTDVEDVISMSLTVVKSLLEKYNIDPKQIGRLEV 80 (459)
T ss_pred CCCccEEEEEEEeCCCeEEcHHHHHHHhCCCHHHHhhccceeEeccCCCCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEE
Confidence 37899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeccCCCCCCcHHHHHHHHhcccCCCCeeEEeeCCcChHHHHHHHHHHHHHHhCCCCCCEEEEEEeecccccCCCCCCcc
Q 012253 85 GSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDSAVYAEGPARPTG 164 (467)
Q Consensus 85 ~Tes~~~~~ps~a~~v~~~Lgl~G~~~~~~~di~~aC~gg~~AL~~A~~~l~a~~~~~~~aLVV~sD~~~y~~~~~~~t~ 164 (467)
+|+|+++.+|++|++|+++++++|+++|++||+++||+||++||++|.+||+++.+|+++||||++|+++|..++.++|+
T Consensus 81 aTeT~~d~~ps~A~~v~~ll~~LG~~~~~afDi~~AC~G~~~AL~~A~~~i~sg~~~~~~aLVV~aD~a~~~~~~~e~t~ 160 (459)
T PLN02577 81 GSETVIDKSKSIKTFLMQLFEESGNTDIEGVDSTNACYGGTAALLNCVNWVESSSWDGRYGLVVAADSAVYAEGPARPTG 160 (459)
T ss_pred EcCCCCCCCCchHHHHHHHHHHhCCCCcEEeehhhhhHHHHHHHHHHHHHHHcCCCCCCeEEEEEechhhccCCCCCCCC
Confidence 99999999999999999888877789999999999999999999999999999977789999999999998877889999
Q ss_pred ccceeEEEecCCCCceeecccccccccCcccccccCCCCCCceecCcchHHHHHHHHHHHHHHHHHHHHhhhcCCCCccc
Q 012253 165 GAAAVAMLIGPDAPIAFESKLRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKYFCQKFEKLEGRQFSMLD 244 (467)
Q Consensus 165 GdGAvA~Ll~~~~~~~~~~~~~~~~~~~~~df~~p~~~~~~~~vdG~~s~~~y~~a~~~~~~~~~~~~~~~~~~~~~~~d 244 (467)
||||+||||+++|++.++....++++.+++|||||...++||.|||++|+.+|++++..+++.|+++.....+.+++++|
T Consensus 161 GdGA~A~lv~~~~~~~l~~~~~g~~~~~~~Df~rP~~~~~~~~vdG~~s~~~yl~~~~~~~~~~~~k~~~~~~~g~~~~d 240 (459)
T PLN02577 161 GAGAVAMLVGPNAPIVFESKYRGSHMAHVYDFYKPDLASEYPVVDGKLSQTCYLMALDSCYKRFCEKYEKLEGKQFSISD 240 (459)
T ss_pred CcceEEEEEccCCCceeecccccccCcccchhcccCCCCCceEEcchHHHHHHHHHHHHHHHHHHHHhhcccccCCCHHH
Confidence 99999999999887777776788999999999999987789999999999999999999999999887533345788999
Q ss_pred cceeccCCchHHHHHHHHHhhhhhhhccccCchhhHHhhhcCCCCCCCcchhhhhhhHHHHHHHHHHHHhhhhcCCCccc
Q 012253 245 VDYFVFHSPYNKLVQKSFARLFFNDFLRNASSVDEIAKEKLAPYSTLSDVESYQSRDLEKASQQVAKQLYDLKVQPSTLI 324 (467)
Q Consensus 245 ~d~~i~H~p~~k~~~k~~~~l~~~~~~~~~~~~~~~~~~~l~~~~g~~~e~~~~~~~~~k~~~~~~~~~~~~~~~~s~~~ 324 (467)
||++||||||+||++|++++|+++||.+....+.+..++.+.++.+++.+++|.||+++|++..++++.|.+|++||+.+
T Consensus 241 ~d~~vfHqP~~km~~ka~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kv~ps~~~ 320 (459)
T PLN02577 241 ADYFVFHAPYNKLVQKSFARLVYNDFQRNASSVDEDAKEKLAPFAGLSSDESYQNRDLEKVSQQVAKPLYDAKVQPTTLI 320 (459)
T ss_pred cCEEEecCCccchhHHHHHHHhhhhhhhccccccchhhhccccccccchhhccccchHHHHHHHhhHHHHHHhhccHhHH
Confidence 99999999999999999999999988754321111223445556688899999999999999999999999999999999
Q ss_pred ccccCccccchHHHHHHHHHhhcCcCCCCCEEEEEEeccccceeeEEEEEecCCCCcchhhhhhcCChHHHhcccccCCh
Q 012253 325 PKQVGNMYTASLYAAFASLLHEKHSSLEGKRVIMFSYGSGLTATMFSLQLQEGHRPFSLSNIVKVMDVPGKLKLRHEFPP 404 (467)
Q Consensus 325 ~~~~GN~~taS~~l~L~~~l~~~~~~~~G~~ill~syGsG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~r~~~~~ 404 (467)
++++|||||||+|++|+++|++....++|+||+|||||||+++++|+++++++..++.+++++.+.+++++|++|++||+
T Consensus 321 ~~~vGN~YTaSlyl~L~SlL~~~~~~~~G~rIg~fSYGSG~~se~fs~~v~~~~~~~~~~~~~~~~~~~~~L~~R~~ls~ 400 (459)
T PLN02577 321 PKQVGNMYTASLYAALASLVHNKHSELAGKRILMFSYGSGLTATMFSLRLHEGQHPFSLSNIAKVMDVSEKLKSRHEVSP 400 (459)
T ss_pred HHhcCcccchHHHHHHHHHHhhccccCCCCEEEEEeecCCccceeEEEEEeCCCccccHHHHHHhccHHHHHhCCccCCH
Confidence 99999999999999999999874335699999999999999999999999995333445788888999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCccCCCCCCcCCCcEEEEeeCCCCceEEeeecCC
Q 012253 405 EKFVDIMKLMEHRYGAKDFVTSKDSSLLSPGTCYLTEVDSMFRRFYAKKENT 456 (467)
Q Consensus 405 ~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~R~Y~~~~~~ 456 (467)
+||+++++.|+..|+..+|.|..+.+.+++|+|||++|+++|||+|++++..
T Consensus 401 ~ey~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~i~~~~~R~Y~~~~~~ 452 (459)
T PLN02577 401 EKFVETLKLMEHRYGAKDFVPSKDVSLLAPGTYYLTEVDSLYRRFYDRKALN 452 (459)
T ss_pred HHHHHHHHHHHhhccCcCCCcCCcccccCCCceEEeEEcCCcEEEEEecCCC
Confidence 9999999999999999999999988888999999999999999999997543
|
|
| >TIGR01833 HMG-CoA-S_euk 3-hydroxy-3-methylglutaryl-CoA-synthase, eukaryotic clade | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-96 Score=757.08 Aligned_cols=446 Identities=62% Similarity=0.984 Sum_probs=406.2
Q ss_pred eeEEeEEEEecCCceeehhHHhhhhCCCcCeeEEeccceEeeccCCCCCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEec
Q 012253 8 NVGILALDIYFPPTCVLQEALEVHDGVSKGKYTVGLGQDCMAFCSEVEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSE 87 (467)
Q Consensus 8 ~vgI~ai~~y~P~~~v~~~el~~~~g~~~~k~~~Gig~r~~av~~~~Ed~~~ma~~Aa~~aL~~agi~~~~Id~Li~~Te 87 (467)
+|||.+|++|+|+++|++++|++.+|++++||++||++++|+|++++||+++||++||+++|++++++|++||+||++|+
T Consensus 1 ~vgI~~ig~y~P~~~v~~~eLa~~~g~~~~k~~~GI~~rr~av~~~~Ed~~tma~~AA~~lL~~a~id~~~Id~Liv~Te 80 (454)
T TIGR01833 1 DVGILALEIYFPSQYVDQAELEKYDGVSAGKYTIGLGQTKMGFCTDREDINSLCLTVVSKLMERYNIDYNQIGRLEVGTE 80 (454)
T ss_pred CcEEEEEEEeCCCeEEcHHHHHHhcCCCHHHheechhheecccCCCCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEECC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCcHHHHHHHHhcccCCCCeeEEeeCCcChHHHHHHHHHHHHHHhCCCCCCEEEEEEeecccccCCCCCCccccc
Q 012253 88 TVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDSAVYAEGPARPTGGAA 167 (467)
Q Consensus 88 s~~~~~ps~a~~v~~~Lgl~G~~~~~~~di~~aC~gg~~AL~~A~~~l~a~~~~~~~aLVV~sD~~~y~~~~~~~t~GdG 167 (467)
|+++.+|+++++||++|+++|+++|++||+++||+|+++||++|.+||+++.+|+++||||++|+++|.+.+.++|+|||
T Consensus 81 S~~d~sps~a~~v~~lL~~lG~~~~~~fDi~~AC~G~t~AL~~A~~~i~s~~~~~~~aLVV~sDia~y~~~~~~~t~GaG 160 (454)
T TIGR01833 81 TIIDKSKSVKTVLMQLFEESGNTDVEGIDTTNACYGGTAALFNAINWIESSSWDGRYALVVAGDIAVYAKGNARPTGGAG 160 (454)
T ss_pred CCCCCCCchHHHHHHHHHhcCCCCceEEeccccchhHHHHHHHHHHHHHcCCcCCCeEEEEEeccccccCCCeeeccccc
Confidence 99999999999999999988889999999999999999999999999999977789999999999999998889999999
Q ss_pred eeEEEecCCCCceeecccccccccCcccccccCCCCCCceecCcchHHHHHHHHHHHHHHHHHHHHhh-h----cCCCCc
Q 012253 168 AVAMLIGPDAPIAFESKLRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKYFCQKFEKL-E----GRQFSM 242 (467)
Q Consensus 168 AvA~Ll~~~~~~~~~~~~~~~~~~~~~df~~p~~~~~~~~vdG~~s~~~y~~a~~~~~~~~~~~~~~~-~----~~~~~~ 242 (467)
|+||||+++|+++++++..++|+.+++|||||...++||.|||++|+.||+++++.+|..|.++.... . +.+..+
T Consensus 161 AvAmLv~~~~~~~~~~~~~~~~~~~~~DF~rP~~~~~~p~vdg~~S~~~Yl~a~~~~y~~y~~~~~~a~~~~~~~~~~~~ 240 (454)
T TIGR01833 161 AVAMLIGPNAPIVFERGLRGSHMQHAYDFYKPDLASEYPVVDGKLSIQCYLSALDRCYKSYCKKIEKQWGKSGGDRKFTL 240 (454)
T ss_pred eEEEEeccCccceecCccceEEEeecccccCCCCCCcccccCCccCHHHHHHHHHHHHHHHHHHHHHhhhhhccccCCCH
Confidence 99999999998888876688999999999999876779999999999999999999999998876421 1 125778
Q ss_pred cccceeccCCchHHHHHHHHHhhhhhhhccccCchhhHHhhhcCCCCCCCcchhhhhhhHHHHHHHHHHHHhhhhcCCCc
Q 012253 243 LDVDYFVFHSPYNKLVQKSFARLFFNDFLRNASSVDEIAKEKLAPYSTLSDVESYQSRDLEKASQQVAKQLYDLKVQPST 322 (467)
Q Consensus 243 ~d~d~~i~H~p~~k~~~k~~~~l~~~~~~~~~~~~~~~~~~~l~~~~g~~~e~~~~~~~~~k~~~~~~~~~~~~~~~~s~ 322 (467)
+|||++|||+||+||++|++++|+++++...+..+....++++.++..++.+++|+|++++|.|.+++++.|.+|+.||+
T Consensus 241 ~dfd~~~fH~P~~km~~ka~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kv~ps~ 320 (454)
T TIGR01833 241 NDFDYMVFHSPYCKLVQKSLARLLYNDFLRNPSSIDTALYEGLEALSTLKLEDTYFDRDLEKAFMKASKELFDKKTKPSL 320 (454)
T ss_pred hHcCEEeccCCcccHHHHHHHHHHHhhhhhccccccchhhcccchhhccccccccchhhHHHHHHhhhhhhHHHhhcchh
Confidence 99999999999999999999999988887554222222355666677899999999999999999999999999999999
Q ss_pred ccccccCccccchHHHHHHHHHhhcCc-CCCCCEEEEEEeccccceeeEEEEEecCCCCc-c-hhhhhhcCChHHHhccc
Q 012253 323 LIPKQVGNMYTASLYAAFASLLHEKHS-SLEGKRVIMFSYGSGLTATMFSLQLQEGHRPF-S-LSNIVKVMDVPGKLKLR 399 (467)
Q Consensus 323 ~~~~~~GN~~taS~~l~L~~~l~~~~~-~~~G~~ill~syGsG~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~L~~r 399 (467)
.+++++|||||||+|++|+++|++... .+.|+||+|||||||+++++|+++++++..++ . ++.+....++.++|++|
T Consensus 321 ~~~~~vGN~YtaSlyl~L~Sll~~~~~~~~~g~ri~~fSYGSG~~se~fs~~v~~~~~~~~~~~~~~~~~~~~~~~L~~R 400 (454)
T TIGR01833 321 LVPNQVGNMYTASLYGCLASLLSSKSAQELAGKRVGMFSYGSGLAASMFSLRVSQDASPGSALDKLIASLSDLKNKLDSR 400 (454)
T ss_pred HHHHhcCchhhhHHHHHHHHHHhhCCccccCCCEEEEEeccCCcceeeEEEEEeCCccccchHHHHHHHHhhHHHHHhcC
Confidence 999999999999999999999987432 56899999999999999999999999932211 0 55555666999999999
Q ss_pred ccCChHHHHHHHHHHHHhcCCCCCccCCCCCCcCCCcEEEEeeCCCCceEEeee
Q 012253 400 HEFPPEKFVDIMKLMEHRYGAKDFVTSKDSSLLSPGTCYLTEVDSMFRRFYAKK 453 (467)
Q Consensus 400 ~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~R~Y~~~ 453 (467)
+++|++||+++++.|++.|+.++|.|.++.+.++||+|||++|+++|||+|+++
T Consensus 401 ~~~s~~ey~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~i~~~~~R~Y~~~ 454 (454)
T TIGR01833 401 HCVAPEEFEETMELREQAHHKKNFTPQGSIDLLFPGTWYLERVDSKHRRSYARK 454 (454)
T ss_pred ccCCHHHHHHHHHhhhhhcccccccccccccccCCCcEEEeeecCCceEEeccC
Confidence 999999999999999999999999999999889999999999999999999875
|
Hydroxymethylglutaryl(HMG)-CoA synthase is the first step of isopentenyl pyrophosphate (IPP) biosynthesis via the mevalonate pathway. This pathway is found mainly in eukaryotes, but also in archaea and some bacteria. This model is specific for eukaryotes. |
| >COG3425 PksG 3-hydroxy-3-methylglutaryl CoA synthase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-82 Score=624.01 Aligned_cols=375 Identities=34% Similarity=0.515 Sum_probs=348.6
Q ss_pred ceeEEeEEEEecCCceeehhHHhhhhCCCcCeeEEeccceEeeccCCCCCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEe
Q 012253 7 KNVGILALDIYFPPTCVLQEALEVHDGVSKGKYTVGLGQDCMAFCSEVEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGS 86 (467)
Q Consensus 7 ~~vgI~ai~~y~P~~~v~~~el~~~~g~~~~k~~~Gig~r~~av~~~~Ed~~~ma~~Aa~~aL~~agi~~~~Id~Li~~T 86 (467)
|+|||.++++|+|.++|+++||++.+|.+++|+++|+|+..|+|++.+||++|||++||+++|+++++||++|++|+|||
T Consensus 1 ~~iGI~~~g~y~p~~~i~~~ela~~~g~d~~k~~~gl~~~e~sv~~~~ED~vTmaveAA~~~l~r~~~D~~~Ig~v~vgT 80 (377)
T COG3425 1 MMIGIVGIGAYIPRYRIKLEELARAWGVDPEKIKKGLGVEEKSVPPWDEDAVTMAVEAARNALKRADIDPSKIGAVIVGS 80 (377)
T ss_pred CccccceEEEeccceEeeHHHHHhhcCCChHHhhhccccccccCCCCchhHHHHHHHHHHHHHhccCCCHHHCceEEEec
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCcHHHHHHHHhcccCCCCeeEEeeCCcChHHHHHHHHHHHHHHhCCCCCCEEEEEEeecccccCC-CCCCccc
Q 012253 87 ETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDSAVYAEG-PARPTGG 165 (467)
Q Consensus 87 es~~~~~ps~a~~v~~~Lgl~G~~~~~~~di~~aC~gg~~AL~~A~~~l~a~~~~~~~aLVV~sD~~~y~~~-~~~~t~G 165 (467)
||++|.+|++|++|+++||+ +++++++|+++||++||+||++|.+||.++.+ +++|||++|++.|.++ ..|+|+|
T Consensus 81 ES~~d~~K~~at~v~~~lg~--~~~~~~~d~~~AC~agT~aL~~a~~~v~s~~~--~~~LvI~sD~a~~~~~~~~E~t~G 156 (377)
T COG3425 81 ESGPDAVKPTATIVAEALGL--NPSARAADVEFACYAGTAALQAAIGWVESGMI--SYGLVIGADTAQYAPGDALEYTAG 156 (377)
T ss_pred CCCcccccchHHHHHHHhCC--CCceehhhHHHHHHHHHHHHHHHHHHHHcCCc--cceEEEeehhhccCCCcccCccCC
Confidence 99999999999999999999 89999999999999999999999999999976 8999999999999998 5699999
Q ss_pred cceeEEEecCCCCceeecccccccccCcccccccCCCCCCceecCcchHHHHHHHHHHHHHHHHHHHHhhhcCCCCcccc
Q 012253 166 AAAVAMLIGPDAPIAFESKLRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKYFCQKFEKLEGRQFSMLDV 245 (467)
Q Consensus 166 dGAvA~Ll~~~~~~~~~~~~~~~~~~~~~df~~p~~~~~~~~vdG~~s~~~y~~a~~~~~~~~~~~~~~~~~~~~~~~d~ 245 (467)
+|||||||++++++..+....++++.+.+|||||... .||.+||++|..+|.+++..+++.|.++. +++++||
T Consensus 157 AGavA~lIg~n~~~~a~~~~~~syt~d~~DFwRp~~~-~yp~~dg~~s~~~Y~~~~~~a~~~~~~k~------gls~~df 229 (377)
T COG3425 157 AGAVAFLIGKNPPIVAEFEGTGSYTTDTPDFWRPDGQ-PYPYVDGRFSEPAYFKHVENAAKGYMEKT------GLSPDDF 229 (377)
T ss_pred CceEEEEEccCCCeEEEecCceEEecCCCcccccCCC-cccccCceecHHHHHHHHHHHHHHHHHHh------CCChhhh
Confidence 9999999999987766666899999999999999955 89999999999999999999999999887 5889999
Q ss_pred ceeccCCchHHHHHHHHHhhhhhhhccccCchhhHHhhhcCCCCCCCcchhhhhhhHHHHHHHHHHHHhhhhcCCCcccc
Q 012253 246 DYFVFHSPYNKLVQKSFARLFFNDFLRNASSVDEIAKEKLAPYSTLSDVESYQSRDLEKASQQVAKQLYDLKVQPSTLIP 325 (467)
Q Consensus 246 d~~i~H~p~~k~~~k~~~~l~~~~~~~~~~~~~~~~~~~l~~~~g~~~e~~~~~~~~~k~~~~~~~~~~~~~~~~s~~~~ 325 (467)
|++|||+||+||++|+++.+++ + .+++.|++.++
T Consensus 230 dy~vfH~P~~k~~~ka~k~l~~------------------------~----------------------~e~v~~~l~~~ 263 (377)
T COG3425 230 DYIVFHQPNGKFPKKAAKSLGF------------------------K----------------------EEQVKPGLVYP 263 (377)
T ss_pred CeEEecCCCCchHHHHHHHhCc------------------------c----------------------HhhcCccchhh
Confidence 9999999999999999998842 1 25788999999
Q ss_pred cccCccccchHHHHHHHHHhhcCcCCCCCEEEEEEeccccceeeEEEEEecCCCCcchhhhhhcCChHHHhcccccCChH
Q 012253 326 KQVGNMYTASLYAAFASLLHEKHSSLEGKRVIMFSYGSGLTATMFSLQLQEGHRPFSLSNIVKVMDVPGKLKLRHEFPPE 405 (467)
Q Consensus 326 ~~~GN~~taS~~l~L~~~l~~~~~~~~G~~ill~syGsG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~r~~~~~~ 405 (467)
+++||+||||+|++|+++|++. + ++|+||+++|||||+.+++|++++++ ++++++++..+..+|.+|+++|+.
T Consensus 264 ~~vGN~YtgS~~L~Las~L~~a-~-~~G~rIl~~SYGSGa~s~~fs~~v~~-----~~~~~~~~~~~~~~l~~R~~ls~~ 336 (377)
T COG3425 264 QRIGNTYTGSLLLGLASLLDNA-K-LPGDRILLFSYGSGAGSEAFSITVTD-----GIEERRKKLAPTVLLEQRNRLSYI 336 (377)
T ss_pred hhcCcccchhHHHHHHHHHhhc-C-CCCCEEEEEeeCCCcceeEEEEEecc-----cHHHHhhhcchHHHHHhhccCCHH
Confidence 9999999999999999999995 3 79999999999999999999999999 899999899999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCccCCCCCCcCCCcEEEEeeCCCCceEEee
Q 012253 406 KFVDIMKLMEHRYGAKDFVTSKDSSLLSPGTCYLTEVDSMFRRFYAK 452 (467)
Q Consensus 406 ~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~R~Y~~ 452 (467)
+|+.+++.|...+..+++.+ ...+.|||..|++ +.|.|.+
T Consensus 337 dYe~~~~~~~~~~~~~~~~~------~~~~~~~l~~i~~-~~R~y~~ 376 (377)
T COG3425 337 DYELYFKRRKKIRLGKDNEF------YDSGDYYLEEIDD-HFRRYRY 376 (377)
T ss_pred HHHHHHhhhccccccccccc------ccCCceEEeeccC-CceeEee
Confidence 99999998776665544444 4568899999999 6666754
|
|
| >TIGR01835 HMG-CoA-S_prok 3-hydroxy-3-methylglutaryl CoA synthase, prokaryotic clade | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-71 Score=570.92 Aligned_cols=377 Identities=28% Similarity=0.440 Sum_probs=330.6
Q ss_pred eEEeEEEEecCCceeehhHHhhhhCCCcCeeEEeccceEeeccCCCCCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEecc
Q 012253 9 VGILALDIYFPPTCVLQEALEVHDGVSKGKYTVGLGQDCMAFCSEVEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSET 88 (467)
Q Consensus 9 vgI~ai~~y~P~~~v~~~el~~~~g~~~~k~~~Gig~r~~av~~~~Ed~~~ma~~Aa~~aL~~agi~~~~Id~Li~~Tes 88 (467)
|||.+|++|+|+++|++++|++.+|++++||..|+|++++++++++||+++||++|+++||+++ +|++||+|+++|+|
T Consensus 1 iGI~~i~~y~P~~~v~~~ela~~~g~~~~~~~~g~G~~~~~~~~~~ed~~~la~~Aa~~aL~~a--~~~~Id~li~~t~s 78 (379)
T TIGR01835 1 IGIDKISFFTPQNYLDMTALAEARGVDPEKFHIGIGQKKMAVPPIDEDIVTMAASAAKPILDRN--DKQKIDMVIFGTES 78 (379)
T ss_pred CCEeEEEEECCCEEeeHHHHHHHhCCCHHHHHhhcCceEEeeCCCCCCHHHHHHHHHHHHHHhC--CHhhCCEEEEEeCC
Confidence 6999999999999999999999999999999999999999999999999999999999999998 89999999999999
Q ss_pred CCCCCCcHHHHHHHHhcccCCCCeeEEeeCCcChHHHHHHHHHHHHHHhCCCCCCEEEEEEeecccccCC-CCCCccccc
Q 012253 89 VIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDSAVYAEG-PARPTGGAA 167 (467)
Q Consensus 89 ~~~~~ps~a~~v~~~Lgl~G~~~~~~~di~~aC~gg~~AL~~A~~~l~a~~~~~~~aLVV~sD~~~y~~~-~~~~t~GdG 167 (467)
+++.+|+++++|+++||+ +++|+++|+++||+|++.||++|.+||+++. .++||||++|+++|... +.++|||||
T Consensus 79 ~~~~~~s~a~~v~~~Lgl--~~~~~~~dv~~aC~gg~~aL~~A~~~i~s~~--~~~aLVv~~D~a~~~~~~~~~~~~GdG 154 (379)
T TIGR01835 79 GIDQSKAAAVYVHGLLGL--QPFCRSFELKQACYGATAALQMAKGHVALSP--DRKVLVIASDIAKYGLESPGEPTQGAG 154 (379)
T ss_pred CCCCCCCHHHHHHHHhCC--CCCceEEEeccccHHHHHHHHHHHHHHHcCC--CCeEEEEEeehhhcccCCCCCccccCc
Confidence 999999999999999998 5689999999999999999999999999995 49999999999988754 458999999
Q ss_pred eeEEEecCCCCc-eeecccccccccCcccccccCCCCCCceecCcchHHHHHHHHHHHHHHHHHHHHhhhcCCCCccccc
Q 012253 168 AVAMLIGPDAPI-AFESKLRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKYFCQKFEKLEGRQFSMLDVD 246 (467)
Q Consensus 168 AvA~Ll~~~~~~-~~~~~~~~~~~~~~~df~~p~~~~~~~~vdG~~s~~~y~~a~~~~~~~~~~~~~~~~~~~~~~~d~d 246 (467)
|+||||++++++ .++. ....++.+.+|||+|.. ..+|.++|+++..+|++.+.++++.++++. +++++|||
T Consensus 155 A~A~Ll~~~~~i~~~~~-~~~~~t~~~~df~~p~~-~~~~~v~g~~s~~~y~~~~~~~~~~~l~~~------g~~~~did 226 (379)
T TIGR01835 155 AVAMLVSADPKLLAINE-DSVLYTDDIMDFWRPNY-STTALVDGQYSNEQYLNAFENAWNDYAKRT------GLSLADFA 226 (379)
T ss_pred cEEEEEecCCCeeEEec-cceeeecCCCCccCCCC-CCceeECcHHHHHHHHHHHHHHHHHHHHHh------CCCHHHcC
Confidence 999999998764 3433 24467888899999974 568999999999999999999999998765 58899999
Q ss_pred eeccCCchHHHHHHHHHhhhhhhhccccCchhhHHhhhcCCCCCCCcchhhhhhhHHHHHHHHHHHHhhhhcCCCccccc
Q 012253 247 YFVFHSPYNKLVQKSFARLFFNDFLRNASSVDEIAKEKLAPYSTLSDVESYQSRDLEKASQQVAKQLYDLKVQPSTLIPK 326 (467)
Q Consensus 247 ~~i~H~p~~k~~~k~~~~l~~~~~~~~~~~~~~~~~~~l~~~~g~~~e~~~~~~~~~k~~~~~~~~~~~~~~~~s~~~~~ 326 (467)
+++|||||.+|+.|++++++ +++ +++.+ +.+.+.+++|+.+.+
T Consensus 227 ~~i~H~p~~~~~~k~~~~~l-~~~-------------------~~~~~-----------------~~~~~~~~~s~~~~~ 269 (379)
T TIGR01835 227 AFCFHVPFTKMGLKALRHIL-KKN-------------------YEDED-----------------ESVQNAYLESIIYNR 269 (379)
T ss_pred EEEECCCCCcHHHHHHHHHH-hhc-------------------ccccH-----------------HHHHHHhhhhhhhhh
Confidence 99999999999999988874 110 23321 122344566788889
Q ss_pred ccCccccchHHHHHHHHHhhcCcCCCCCEEEEEEeccccceeeEEEEEecCCCCcchhhhhhcCChHHHhcccccCChHH
Q 012253 327 QVGNMYTASLYAAFASLLHEKHSSLEGKRVIMFSYGSGLTATMFSLQLQEGHRPFSLSNIVKVMDVPGKLKLRHEFPPEK 406 (467)
Q Consensus 327 ~~GN~~taS~~l~L~~~l~~~~~~~~G~~ill~syGsG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~r~~~~~~~ 406 (467)
++|||||||+|++|++++++.+++++||+|+|+|||||+++++|++++.+ ++++...+.++.++|++|+.++++|
T Consensus 270 ~~GN~~sas~~l~L~~~l~~~~~~~~Gd~ill~s~GsG~~ae~~~~~~~~-----~~~~~~~~~~~~~~l~~r~~~~~~~ 344 (379)
T TIGR01835 270 EVGNLYTGSLYLGLASLLENAFEDTTGDKIGLFSYGSGAVAEFFSGTLVA-----GYRDHLKKERHLALLKNRTNLSYAE 344 (379)
T ss_pred hcCchHhHHHHHHHHHHHHhcccCCCCCEEEEEEecCCcceeeEEEEEcc-----cHHHHHhcccHHHHHhCCccCCHHH
Confidence 99999999999999999998325789999999999999999999999998 8988888889999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCccCCCCCCcCCCcEEEEeeCCCCceEE
Q 012253 407 FVDIMKLMEHRYGAKDFVTSKDSSLLSPGTCYLTEVDSMFRRFY 450 (467)
Q Consensus 407 y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~R~Y 450 (467)
|+++++.+.. +..+.....+|+|||++|++ |+|+|
T Consensus 345 y~~~~~~~~~--------~~~~~~~~~~~~~~l~~~~~-~~r~y 379 (379)
T TIGR01835 345 YEALFEETLP--------TDGDQPGEDRGFFRLAGIND-HKRIY 379 (379)
T ss_pred HHHHHHhccC--------CCCCcccCCCCcEEEEEecc-cEeeC
Confidence 9999987543 11113345688999999999 78888
|
This clade of hydroxymethylglutaryl-CoA (HMG-CoA) synthases is found in a limited spectrum of mostly gram-positive bacteria which make isopentenyl pyrophosphate (IPP) via the mevalonate pathway. This pathway is found primarily in eukaryotes and archaea, but the bacterial homologs are distinct, having aparrently diverged after being laterally transferred from an early eukaryote. HMG-CoA synthase is the first step in the pathway and joins acetyl-CoA with acetoacetyl-CoA with the release of one molecule of CoA. The Borellia sequence may have resulted from a separate lateral transfer event. |
| >PF08540 HMG_CoA_synt_C: Hydroxymethylglutaryl-coenzyme A synthase C terminal; InterPro: IPR013746 Synonym(s): 3-hydroxy-3-methylglutaryl-coenzyme A synthase, HMG-CoA synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-61 Score=467.49 Aligned_cols=270 Identities=55% Similarity=0.866 Sum_probs=225.5
Q ss_pred ceeecccccccccCcccccccCCCCCCceecCcchHHHHHHHHHHHHHHHHHHHHhhh---cCCCCccccceeccCCchH
Q 012253 179 IAFESKLRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKYFCQKFEKLE---GRQFSMLDVDYFVFHSPYN 255 (467)
Q Consensus 179 ~~~~~~~~~~~~~~~~df~~p~~~~~~~~vdG~~s~~~y~~a~~~~~~~~~~~~~~~~---~~~~~~~d~d~~i~H~p~~ 255 (467)
++|++++.++||.|+||||||+..++||+|||++|++||+++++.||+.|+++..+.. ..+..+++||+++||.||+
T Consensus 1 iv~d~~~~~~~m~~~yDFyKP~~~seyP~VDG~~S~~~Yl~ald~~y~~y~~k~~~~~~~~~~~~~l~~~d~~~fH~Py~ 80 (282)
T PF08540_consen 1 IVFDRGLRGSHMEHVYDFYKPDLSSEYPVVDGKLSIQCYLDALDKCYKRYKEKVEKLANRGNKGTSLDDFDYVCFHSPYC 80 (282)
T ss_dssp EEEETTEEEEEE----SEE-BTTT-SS-EE-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSST--GGG-SEEEE--SSH
T ss_pred CcccCCCceeehhhchhccCCCCCCCCcEEchHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCccccceEEEecCch
Confidence 4678889999999999999999899999999999999999999999999999874321 3468899999999999999
Q ss_pred HHHHHHHHhhhhhhhccccCch-hhHHhhhcCCCCCCCcchhhhhhhHHHHHHHHHHHHhhhhcCCCcccccccCccccc
Q 012253 256 KLVQKSFARLFFNDFLRNASSV-DEIAKEKLAPYSTLSDVESYQSRDLEKASQQVAKQLYDLKVQPSTLIPKQVGNMYTA 334 (467)
Q Consensus 256 k~~~k~~~~l~~~~~~~~~~~~-~~~~~~~l~~~~g~~~e~~~~~~~~~k~~~~~~~~~~~~~~~~s~~~~~~~GN~~ta 334 (467)
||++|++.+|+++|+..++..+ .....+++.++.+++.+++|+||+++|++.+.+++.|++|++||+.+++++||||||
T Consensus 81 klv~Ka~~rl~~~D~~~~~~~~~~~~~~~~l~~~~~~~~~~s~~dr~lek~~~~~s~~~~~~kv~psl~~~~~vGN~YTa 160 (282)
T PF08540_consen 81 KLVQKAFARLLYNDFLRNPSSEEFEEIDAELAPFRDLPLEESYFDRDLEKAFMKASKEDFERKVEPSLLYSRQVGNMYTA 160 (282)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCHHHHHHHCCHGGGTT--GGGHCTHHHHHHHHHHHHHHHHHHHCHHHTHHHHHHB--GGG
T ss_pred HHHHHHHHHHHHhhhhhccccccccccchhhhhhccCCcccccccHHHHHHHHHHHHHHHHHHHhHHHHHHHHcCceehH
Confidence 9999999999999998776642 233455667777899999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHh-hcCcCCCCCEEEEEEeccccceeeEEEEEecCCCCcchhh-------hhhcCChHHHhcccccCChHH
Q 012253 335 SLYAAFASLLH-EKHSSLEGKRVIMFSYGSGLTATMFSLQLQEGHRPFSLSN-------IVKVMDVPGKLKLRHEFPPEK 406 (467)
Q Consensus 335 S~~l~L~~~l~-~~~~~~~G~~ill~syGsG~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~L~~r~~~~~~~ 406 (467)
|+|++|+++|. .....+.|+||+|||||||+++++|++++++ +++. +.+.+++.+||++|+++|++|
T Consensus 161 Sly~~L~SlL~~~~~~~l~GkrI~~FSYGSG~~s~~fs~~v~~-----~~~~~~~~~~~i~~~~dl~~rL~~R~~~s~ee 235 (282)
T PF08540_consen 161 SLYLGLASLLSSAEADDLAGKRIGMFSYGSGLASEFFSGRVQP-----GAEEGSLLNRLIAKALDLKERLDARTKLSPEE 235 (282)
T ss_dssp HHHHHHHHHHHHHHSCHHTT-EEEEEEEETTTEEEEEEEEE-T-----TGGGTSHHHHHHHHHHCHHHHHHTSEEE-HHH
T ss_pred HHHHHHHHHhhccCccccCCCEEEEEEecCCcceeEEEEEEeC-----CccccchhhhHHHhhhhHHHHHhcCcCCCHHH
Confidence 99999999993 2234568999999999999999999999999 5655 677789999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCccCCCCCCcCCCcEEEEeeCCCCceEEeee
Q 012253 407 FVDIMKLMEHRYGAKDFVTSKDSSLLSPGTCYLTEVDSMFRRFYAKK 453 (467)
Q Consensus 407 y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~R~Y~~~ 453 (467)
|++++++|++.|+..+|.|.++.+.++||+|||++||++|||+|++|
T Consensus 236 ye~~~~~re~~~~~~~y~p~~~~~~l~~GtyyL~~VD~~~RR~Y~rk 282 (282)
T PF08540_consen 236 YEEILKLREKTYGAKDYTPSGDISSLFPGTYYLTRVDDKHRRTYARK 282 (282)
T ss_dssp HHHHHHHHHHHTTHTSBETTSTGGGSGTTSEEEEEEETTSEEEEEE-
T ss_pred HHHHHHhhhhhccccCCCCCCcccccCCCCEEEcccCCcceEEeccC
Confidence 99999999999999999999999999999999999999999999986
|
Hydroxymethylglutaryl-CoA synthase (2.3.3.10 from EC) catalyses the condensation of acetyl-CoA with acetoacetyl-CoA to produce HMG-CoA and CoA, the second reaction in the mevalonate-dependent isoprenoid biosynthesis pathway. HMG-CoA synthase contains an important catalytic cysteine residue that acts as a nucleophile in the first step of the reaction: the acetylation of the enzyme by acetyl-CoA (its first substrate) to produce an acetyl-enzyme thioester, releasing the reduced coenzyme A. The subsequent nucleophilic attack on acetoacetyl-CoA (its second substrate) leads to the formation of HMG-CoA []. HMG-CoA synthase occurs in eukaryotes, archaea and certain bacteria []. In vertebrates, there are two isozymes located in different subcellular compartments: a cytosolic form that is the starting point of the mevalonate pathway (leads to cholesterol and other sterolic and isoprenoid compounds), and a mitochondrial form responsible for ketone body biosynthesis. HMG-CoA is also found in other eukaryotes such as insects, plants and fungi []. In bacteria, isoprenoid precursors are generally synthesised via an alternative, non-mevalonate pathway, however a number of Gram-positive pathogens utilise a mevalonate pathway involving HMG-CoA synthase that is parallel to that found in eukaryotes [, ]. This entry represents the C-terminal domain of HMG-CoA synthase enzymes from both eukaryotes and prokaryotes.; GO: 0004421 hydroxymethylglutaryl-CoA synthase activity, 0008299 isoprenoid biosynthetic process; PDB: 1TXT_D 1TVZ_A 1X9E_B 2HDB_B 3V4X_A 3V4N_C 2P8U_A 2FA0_A 2F9A_A 2F82_A .... |
| >COG0332 FabH 3-oxoacyl-[acyl-carrier-protein] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-51 Score=406.80 Aligned_cols=306 Identities=21% Similarity=0.236 Sum_probs=255.8
Q ss_pred ceeEEeEEEEecCCceeehhHHhhhhCCCcCeeE--EeccceEeeccCCCCCHHHHHHHHHHHHHHHcCCCcCCcCEEEE
Q 012253 7 KNVGILALDIYFPPTCVLQEALEVHDGVSKGKYT--VGLGQDCMAFCSEVEDVISMSLTVVTSLLEKYKIDPTQIGRLEV 84 (467)
Q Consensus 7 ~~vgI~ai~~y~P~~~v~~~el~~~~g~~~~k~~--~Gig~r~~av~~~~Ed~~~ma~~Aa~~aL~~agi~~~~Id~Li~ 84 (467)
++++|.++|.|+|++.++++|+++..+.+.+|+. +|+.+|++ +.++|...+||++||++||+++|++|+|||+||+
T Consensus 2 ~~a~i~g~G~~lP~~~vtn~d~e~~~~tsdewI~~rtGir~R~~--a~~~e~~s~la~~Aa~~AL~~Agi~~~dIDlII~ 79 (323)
T COG0332 2 MNAKILGIGSYLPERVVTNADLEKRVDTSDEWIETRTGIRERRI--AADDETTSDLAVEAARKALEDAGISPDDIDLIIV 79 (323)
T ss_pred CcceEEEEEeecCCcccChHHHHhccCCCcceeeeecCCceeee--cCCCccHHHHHHHHHHHHHHHcCCCHHHCCEEEE
Confidence 5789999999999999999999999999999994 68888875 4779999999999999999999999999999999
Q ss_pred EeccCCCCCCcHHHHHHHHhcccCCCCeeEEeeCCcChHHHHHHHHHHHHHHhCCCCCCEEEEEEeecc-cccCCCCC--
Q 012253 85 GSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDSA-VYAEGPAR-- 161 (467)
Q Consensus 85 ~Tes~~~~~ps~a~~v~~~Lgl~G~~~~~~~di~~aC~gg~~AL~~A~~~l~a~~~~~~~aLVV~sD~~-~y~~~~~~-- 161 (467)
+|.||++..|++|+.||+.||+ .++.+||++.+|+|+++||++|..+|++|.+ |+||||++|++ ++.++.+|
T Consensus 80 aT~tpd~~~Ps~A~~vq~~LG~---~~~~afDl~aaCsgf~yaL~~A~~~i~sG~~--k~vLVVg~e~~S~~ld~~dR~t 154 (323)
T COG0332 80 ATSTPDHLFPSTACLVQARLGL---GGAPAFDLQAACSGFLYALSVADGLIRSGGY--KNVLVVGAETLSRILDWTDRDT 154 (323)
T ss_pred EcCCcccCCChHHHHHHHHhCC---CCcceeechhhhHHHHHHHHHHHHHHHcCCC--CEEEEEehhHhhccCCHhhccc
Confidence 9999999999999999999998 6699999999999999999999999999987 99999999999 66666554
Q ss_pred -CccccceeEEEecCCC-CceeecccccccccCcccccccCCC---------CCCceecCcchHHHHHHHHHHHHHHHHH
Q 012253 162 -PTGGAAAVAMLIGPDA-PIAFESKLRGSHMSHAYDFYKPNLA---------SEYPVVDGKLSQTCYLMALDSCYKYFCQ 230 (467)
Q Consensus 162 -~t~GdGAvA~Ll~~~~-~~~~~~~~~~~~~~~~~df~~p~~~---------~~~~~vdG~~s~~~y~~a~~~~~~~~~~ 230 (467)
..|||||+|+||++.+ ...+.....++......-.+.|... ..+..++|+.. |..++....+.+.+
T Consensus 155 ~vlFgDGAgAvvl~~~~~~~~i~~~~l~sdg~~~~~l~~~~~~~~~~~~~~~~~~~~m~Gr~v---fk~av~~~~~~~~~ 231 (323)
T COG0332 155 CVLFGDGAGAVVLEATEDDNGILDTDLGSDGSQGDLLYLPGGGSATPKEESGGGLLVMDGREV---FKFAVRAMPKAIEE 231 (323)
T ss_pred eEEEcCCceEEEEecCCCCcCeeeeeeeccccCCCeeeccCCCCccccccccccceeeccHHH---HHHHHHHHHHHHHH
Confidence 5689999999999986 3222111111111111111222211 13457888876 66666665555555
Q ss_pred HHHhhhcCCCCccccceeccCCchHHHHHHHHHhhhhhhhccccCchhhHHhhhcCCCCCCCcchhhhhhhHHHHHHHHH
Q 012253 231 KFEKLEGRQFSMLDVDYFVFHSPYNKLVQKSFARLFFNDFLRNASSVDEIAKEKLAPYSTLSDVESYQSRDLEKASQQVA 310 (467)
Q Consensus 231 ~~~~~~~~~~~~~d~d~~i~H~p~~k~~~k~~~~l~~~~~~~~~~~~~~~~~~~l~~~~g~~~e~~~~~~~~~k~~~~~~ 310 (467)
.+ +++++..+|||||++||+|.+|.+++.++| ++|++ |++.++
T Consensus 232 ~L---~~~~l~~~dId~~vpHQan~ri~~~i~~~l------------------------~~~~~---------k~~~~~- 274 (323)
T COG0332 232 VL---EKAGLTPEDIDWFVPHQANLRIIEAIAKKL------------------------GIPEE---------KVVVTV- 274 (323)
T ss_pred HH---HHcCCCHHHCCEEccccccHHHHHHHHHHc------------------------CCCHH---------HHhhHH-
Confidence 54 566899999999999999999999999988 67666 444555
Q ss_pred HHHhhhhcCCCcccccccCccccchHHHHHHHHHhhcCcCCCCCEEEEEEeccccceeeEEEEEe
Q 012253 311 KQLYDLKVQPSTLIPKQVGNMYTASLYAAFASLLHEKHSSLEGKRVIMFSYGSGLTATMFSLQLQ 375 (467)
Q Consensus 311 ~~~~~~~~~~s~~~~~~~GN~~taS~~l~L~~~l~~~~~~~~G~~ill~syGsG~~~~~~~~~~~ 375 (467)
+++||+++||+|++|++++++ +++++||+|+|.+||+|++|+++.++|.
T Consensus 275 ---------------~~yGNtsaAsiplaL~~~~~~-g~ik~Gd~ill~~fG~Gltwg~~~~r~~ 323 (323)
T COG0332 275 ---------------DKYGNTSAASIPLALDEALRE-GRIKPGDLVLLEAFGGGLTWGAALVRWG 323 (323)
T ss_pred ---------------HHhcccccchHHHHHHHHhhh-CCCCCCCEEEEEeecCcceeeeEEEEeC
Confidence 899999999999999999999 8999999999999999999999999884
|
|
| >TIGR00748 HMG_CoA_syn_Arc hydroxymethylglutaryl-CoA synthase, putative | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-51 Score=415.64 Aligned_cols=336 Identities=25% Similarity=0.379 Sum_probs=271.4
Q ss_pred eeEEeEEEEecCCceeehhHHhhhhCCCcCeeEEeccceEeeccCCCCCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEec
Q 012253 8 NVGILALDIYFPPTCVLQEALEVHDGVSKGKYTVGLGQDCMAFCSEVEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSE 87 (467)
Q Consensus 8 ~vgI~ai~~y~P~~~v~~~el~~~~g~~~~k~~~Gig~r~~av~~~~Ed~~~ma~~Aa~~aL~~agi~~~~Id~Li~~Te 87 (467)
+++|.+++.|+|+++|+++++++..+.+++++..++|.+++++++++|++.+|+++|+++||+++|+++++||.|+++|+
T Consensus 1 ~~~I~g~g~~lP~~~v~n~~l~~~~~~~~~~i~~~~Gi~~r~v~~~~~~~~~la~~Aa~~aL~~agl~~~dID~li~~s~ 80 (345)
T TIGR00748 1 MAGIVGYGAYIPMYRIKVEEIARVWGKDPESISNGLPVEEKAVPGLDEDTATIGVEAARNALKRAKIDPKDIGAVYVGSE 80 (345)
T ss_pred CccEEEEEEeCCCeeecHHHHHHHhCCCHhHeeeccceeeeecCCCCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEEec
Confidence 47999999999999999999999999999998665666666677899999999999999999999999999999999999
Q ss_pred cCCCCCCcHHHHHHHHhcccCCCCeeEEeeCCcChHHHHHHHHHHHHHHhCCCCCCEEEEEEeecccccCCC-CCCcccc
Q 012253 88 TVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDSAVYAEGP-ARPTGGA 166 (467)
Q Consensus 88 s~~~~~ps~a~~v~~~Lgl~G~~~~~~~di~~aC~gg~~AL~~A~~~l~a~~~~~~~aLVV~sD~~~y~~~~-~~~t~Gd 166 (467)
++++..|+.+..|++.||+ .+++.++|+.++|+|++.||++|..+|++|.. ++||||++|.......+ .+.++||
T Consensus 81 ~~~~~~p~~a~~v~~~LGl--~~~~~~~dv~~aC~g~~~al~~A~~~i~sg~~--~~vLVv~~d~~~~~~~~~~~~~~GD 156 (345)
T TIGR00748 81 SHPYAVKPTATIVAEAIGA--TPDLTAADLEFACKAGTAGIQACMGLVASGMI--KYGLAIGADTAQGAPGDALEYTAGA 156 (345)
T ss_pred CCCccccchHHHHHHHcCC--CCCceEEEHHHhHHHHHHHHHHHHHHHHcCCC--CEEEEEEEeecccCCCccCcccCCC
Confidence 9998889999999999998 55788999999999999999999999999965 99999999998543332 3578899
Q ss_pred ceeEEEecCCCCc-eeecccccccccCcccccccCCCCCCceecCcchH-HHHHHHHHHHHHHHHHHHHhhhcCCCCccc
Q 012253 167 AAVAMLIGPDAPI-AFESKLRGSHMSHAYDFYKPNLASEYPVVDGKLSQ-TCYLMALDSCYKYFCQKFEKLEGRQFSMLD 244 (467)
Q Consensus 167 GAvA~Ll~~~~~~-~~~~~~~~~~~~~~~df~~p~~~~~~~~vdG~~s~-~~y~~a~~~~~~~~~~~~~~~~~~~~~~~d 244 (467)
||+|+||++.+.. .+.. . ..+..+..|+|++. +..++...+++.. ..+.+....+++.++ +++++.++|
T Consensus 157 GAaA~vl~~~~~~~~~~~-~-~~~~~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~L------~~~gl~~~d 227 (345)
T TIGR00748 157 GGAAYIIGEKNTVAYFEG-T-YSYTTDTPDFWRRE-GEPYPRHGGRFTGEPAYFHHVVTAAKGLM------EKLGLTPED 227 (345)
T ss_pred ceEEEEEccCCcceEeec-c-cceecccccccccC-CCcCCCcCCeecChHHHHHHHHHHHHHHH------HHcCCCHHH
Confidence 9999999977642 2221 1 12233345777763 2233433333322 123333334444444 445799999
Q ss_pred cceeccCCchHHHHHHHHHhhhhhhhccccCchhhHHhhhcCCCCCCCcchhhhhhhHHHHHHHHHHHHhhhhcCCCccc
Q 012253 245 VDYFVFHSPYNKLVQKSFARLFFNDFLRNASSVDEIAKEKLAPYSTLSDVESYQSRDLEKASQQVAKQLYDLKVQPSTLI 324 (467)
Q Consensus 245 ~d~~i~H~p~~k~~~k~~~~l~~~~~~~~~~~~~~~~~~~l~~~~g~~~e~~~~~~~~~k~~~~~~~~~~~~~~~~s~~~ 324 (467)
||+|++|||+.+|++.+.++| |+++++.. .+. .
T Consensus 228 id~~i~Hq~~~~~~~~~~~~l------------------------gl~~ek~~----------------------~~~-~ 260 (345)
T TIGR00748 228 FDYAVFHQPNGKFYLVAARML------------------------GFPKEQVK----------------------PGL-L 260 (345)
T ss_pred cCEEEeCCCChHHHHHHHHHc------------------------CCCHHHee----------------------ccc-c
Confidence 999999999999999998887 77776532 111 1
Q ss_pred ccccCccccchHHHHHHHHHhhcCcCCCCCEEEEEEeccccceeeEEEEEecCCCCcchhhhhh-cCChHHHhcccccCC
Q 012253 325 PKQVGNMYTASLYAAFASLLHEKHSSLEGKRVIMFSYGSGLTATMFSLQLQEGHRPFSLSNIVK-VMDVPGKLKLRHEFP 403 (467)
Q Consensus 325 ~~~~GN~~taS~~l~L~~~l~~~~~~~~G~~ill~syGsG~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~L~~r~~~~ 403 (467)
.+++|||+|||+|++|.++++. +++|++|+|++||+|++|++++++|++ .++..++ +-++.+.|++|+.++
T Consensus 261 ~~~~GNt~sAsipl~L~~~~~~---~~~Gd~vll~~~G~G~s~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~ 332 (345)
T TIGR00748 261 TPRIGNTYSGATPVGLSAVLDI---AEPGDRILAVSYGSGAGSDAFSIVVQD-----AIEEKRDLAPKVADYIKRKKYID 332 (345)
T ss_pred ccccCchhhhHHHHHHHHHHHh---cCCCCEEEEEEecCCcceeEEEEEEch-----hHHHHhhhhhhHHHHHhcCccCC
Confidence 3799999999999999999864 689999999999999999999999998 7877763 337999999999999
Q ss_pred hHHHHHHH
Q 012253 404 PEKFVDIM 411 (467)
Q Consensus 404 ~~~y~~~~ 411 (467)
+++|+++.
T Consensus 333 ~~~y~~~~ 340 (345)
T TIGR00748 333 YALYAKFR 340 (345)
T ss_pred HHHHHHHh
Confidence 99999874
|
Thus, although there is no experimental evidence supporting this name, the bioinformatics-based conclusion appears to be sound. |
| >PRK04262 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-51 Score=416.09 Aligned_cols=337 Identities=25% Similarity=0.372 Sum_probs=271.8
Q ss_pred ceeEEeEEEEecCCceeehhHHhhhhCCCcCeeEEeccceEeeccCCCCCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEe
Q 012253 7 KNVGILALDIYFPPTCVLQEALEVHDGVSKGKYTVGLGQDCMAFCSEVEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGS 86 (467)
Q Consensus 7 ~~vgI~ai~~y~P~~~v~~~el~~~~g~~~~k~~~Gig~r~~av~~~~Ed~~~ma~~Aa~~aL~~agi~~~~Id~Li~~T 86 (467)
|+|+|.+++.|+|+++|+++++++..|.+++|+...+|.++++++++++++.+|+++|+++||+++|+++++||+|+++|
T Consensus 1 ~~v~I~~~g~ylP~~~v~~~el~~~~~~~~~~i~~~~Gi~~R~~~~~~~~~~~la~~Aa~~aL~~ag~~~~dId~li~~s 80 (347)
T PRK04262 1 MMVGIVGYGAYIPRYRIKVEEIARVWGDDPEAIKRGLGVEEKSVPGPDEDTATIAVEAARNALKRAGIDPKEIGAVYVGS 80 (347)
T ss_pred CceeEEEEEEeCCCEEecHHHHHHHhCcCHHHHhhccCeeeeecCCCCcCHHHHHHHHHHHHHHHcCCCHHHCCEEEEEe
Confidence 57999999999999999999999999999888753344444457788999999999999999999999999999999999
Q ss_pred ccCCCCCCcHHHHHHHHhcccCCCCeeEEeeCCcChHHHHHHHHHHHHHHhCCCCCCEEEEEEeecccccCCC-CCCccc
Q 012253 87 ETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDSAVYAEGP-ARPTGG 165 (467)
Q Consensus 87 es~~~~~ps~a~~v~~~Lgl~G~~~~~~~di~~aC~gg~~AL~~A~~~l~a~~~~~~~aLVV~sD~~~y~~~~-~~~t~G 165 (467)
+++++..|+.+.+|++.||+ .+++.++|+.++|+|++.||+.|..+|++|.. ++||||++|...+...+ .+.++|
T Consensus 81 ~~~~~~~p~~a~~v~~~Lgl--~~~~~~~dv~~~C~~~~~aL~~A~~~i~sg~~--~~aLVv~~e~~~~~~~~~~~~~~G 156 (347)
T PRK04262 81 ESHPYAVKPTATIVAEALGA--TPDLTAADLEFACKAGTAALQAAMGLVKSGMI--KYALAIGADTAQGAPGDALEYTAA 156 (347)
T ss_pred cCCCcccccHHHHHHHHcCC--CCCceEEEHHHhHHHHHHHHHHHHHHHHcCCC--CEEEEEEEeeeccCCCCCCCCcCC
Confidence 99998889999999999998 45688999999999999999999999999954 99999999997543322 256789
Q ss_pred cceeEEEecCCCCc-eeecccccccccCcccccccCCCCCCceecCcchH-HHHHHHHHHHHHHHHHHHHhhhcCCCCcc
Q 012253 166 AAAVAMLIGPDAPI-AFESKLRGSHMSHAYDFYKPNLASEYPVVDGKLSQ-TCYLMALDSCYKYFCQKFEKLEGRQFSML 243 (467)
Q Consensus 166 dGAvA~Ll~~~~~~-~~~~~~~~~~~~~~~df~~p~~~~~~~~vdG~~s~-~~y~~a~~~~~~~~~~~~~~~~~~~~~~~ 243 (467)
|||+|+||++++.. .+.. ..++..+..|+|++. +..++.....++. ..|.+.+..+++.++++. +++++
T Consensus 157 DGA~A~ll~~~~~~~~i~~--~~~~~~d~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~------gl~~~ 227 (347)
T PRK04262 157 AGGAAFIIGKEEVIAEIEA--TYSYTTDTPDFWRRE-GEPYPRHGGRFTGEPAYFKHIISAAKGLMEKL------GLKPS 227 (347)
T ss_pred CCcEEEEEecCcccceeec--cccccccchhhcCCC-CCcCCCcCceecchHHHHHHHHHHHHHHHHHh------CcCHH
Confidence 99999999986542 2221 112334556788754 2222322222222 145566666666665544 69999
Q ss_pred ccceeccCCchHHHHHHHHHhhhhhhhccccCchhhHHhhhcCCCCCCCcchhhhhhhHHHHHHHHHHHHhhhhcCCCcc
Q 012253 244 DVDYFVFHSPYNKLVQKSFARLFFNDFLRNASSVDEIAKEKLAPYSTLSDVESYQSRDLEKASQQVAKQLYDLKVQPSTL 323 (467)
Q Consensus 244 d~d~~i~H~p~~k~~~k~~~~l~~~~~~~~~~~~~~~~~~~l~~~~g~~~e~~~~~~~~~k~~~~~~~~~~~~~~~~s~~ 323 (467)
|||+|+|||++.+|++.+.++| ++|+++.+ .+.
T Consensus 228 dId~~v~Hq~n~~~~~~~~~~L------------------------gl~~ek~~----------------------~~~- 260 (347)
T PRK04262 228 DYDYAVFHQPNGKFPLRVAKML------------------------GFTKEQVK----------------------PGL- 260 (347)
T ss_pred HhceeecCCCchHHHHHHHHHc------------------------CCCHHHhh----------------------ccc-
Confidence 9999999999999999999888 77776532 112
Q ss_pred cccccCccccchHHHHHHHHHhhcCcCCCCCEEEEEEeccccceeeEEEEEecCCCCcchhhhh-hcCChHHHhcccccC
Q 012253 324 IPKQVGNMYTASLYAAFASLLHEKHSSLEGKRVIMFSYGSGLTATMFSLQLQEGHRPFSLSNIV-KVMDVPGKLKLRHEF 402 (467)
Q Consensus 324 ~~~~~GN~~taS~~l~L~~~l~~~~~~~~G~~ill~syGsG~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~L~~r~~~ 402 (467)
+.+++|||+|||+|++|.++++. +++|++|+|++||+|+++++++++|++ .++..+ ...++.+.|++|+.+
T Consensus 261 ~~~~~GNt~sAsi~~~L~~~~~~---~~~Gd~vll~~~G~G~~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~~~~ 332 (347)
T PRK04262 261 LTPYIGNTYSGSALLGLAAVLDV---AKPGDRILVVSFGSGAGSDAFSITVTD-----AIEEKRDLAPTVEDYLERKKYI 332 (347)
T ss_pred hhhhhCChHHHHHHHHHHHHHHh---CCCCCEEEEEecCCCcceeeEEEEech-----hHHHhhhccccHHHHHhCCccC
Confidence 23899999999999999999874 579999999999999999999999998 677664 334799999999999
Q ss_pred ChHHHHHHH
Q 012253 403 PPEKFVDIM 411 (467)
Q Consensus 403 ~~~~y~~~~ 411 (467)
++++|+++.
T Consensus 333 ~~~~y~~~~ 341 (347)
T PRK04262 333 DYAVYAKYR 341 (347)
T ss_pred CHHHHHHHh
Confidence 999999874
|
|
| >PF01154 HMG_CoA_synt_N: Hydroxymethylglutaryl-coenzyme A synthase N terminal; InterPro: IPR013528 Synonym(s): 3-hydroxy-3-methylglutaryl-coenzyme A synthase, HMG-CoA synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-51 Score=368.60 Aligned_cols=174 Identities=54% Similarity=0.876 Sum_probs=153.2
Q ss_pred CCceeEEeEEEEecCCceeehhHHhhhhCCCcCeeEEeccceEeeccCCCCCHHHHHHHHHHHHHHHcCCCcCCcCEEEE
Q 012253 5 HPKNVGILALDIYFPPTCVLQEALEVHDGVSKGKYTVGLGQDCMAFCSEVEDVISMSLTVVTSLLEKYKIDPTQIGRLEV 84 (467)
Q Consensus 5 ~~~~vgI~ai~~y~P~~~v~~~el~~~~g~~~~k~~~Gig~r~~av~~~~Ed~~~ma~~Aa~~aL~~agi~~~~Id~Li~ 84 (467)
||++|||++|++|+|+++|+++||++++|++++||++||||++|+|++++||+++||++|++++|++.+++|++|++|+|
T Consensus 1 ~p~~VGI~~i~~y~p~~~v~~~~La~~~g~d~~K~~~glgq~~~av~~~~ED~vTmA~nAa~~ll~~~~id~~~Ig~l~v 80 (174)
T PF01154_consen 1 RPQNVGIDAIEFYIPRYYVDQEELAEARGVDPGKYTIGLGQEKMAVPPPDEDIVTMAANAAKPLLDRYNIDPDDIGRLIV 80 (174)
T ss_dssp --SSEEEEEEEEE-ESEEEEHHHHHHHTTS-TCHHHTTT--SEEEE--TTS-HHHHHHHHHHTTHHHHT-HHHHEEEEEE
T ss_pred CCccccEeEEEEecCceEecHHHHHHHhCCCHHHhhhhcCeeEEEeCCCcccHHHHHHHHHHHHHHHcCCCHHHccEEEE
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeccCCCCCCcHHHHHHHHhcccCCCCeeEEeeCCcChHHHHHHHHHHHHHHhCCCCCCEEEEEEeecccccCCCCCCcc
Q 012253 85 GSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDSAVYAEGPARPTG 164 (467)
Q Consensus 85 ~Tes~~~~~ps~a~~v~~~Lgl~G~~~~~~~di~~aC~gg~~AL~~A~~~l~a~~~~~~~aLVV~sD~~~y~~~~~~~t~ 164 (467)
||||++|++||++++||++||++|+++|++||++|||||||+||++|.+||+++.+||+++|||++|+++|..++.|+|+
T Consensus 81 gTES~vD~sKs~~t~v~~ll~~s~~~~~~~~e~k~ACygGTaAL~~a~~~v~s~~~~g~~aLVVasDiA~y~~g~~e~Tq 160 (174)
T PF01154_consen 81 GTESGVDKSKSISTYVHQLLGLSGNPDCRGVEMKQACYGGTAALQNAVNWVASSPWDGRKALVVASDIARYDLGSAEPTQ 160 (174)
T ss_dssp E-SS-SBSSS-HHHHHHHHTTTTT-SSSEEEEEESGGGHHHHHHHHHHHHHCSTTSTTEEEEEEEEEEE--STTTTGGG-
T ss_pred eccccccccccHHHHHHHHhCcCCCCceeeeehhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccccccCCCCccccc
Confidence 99999999999999999999998889999999999999999999999999999988999999999999999998889999
Q ss_pred ccceeEEEecCCCC
Q 012253 165 GAAAVAMLIGPDAP 178 (467)
Q Consensus 165 GdGAvA~Ll~~~~~ 178 (467)
|+|||||||++++|
T Consensus 161 GAGAVAmLi~~nap 174 (174)
T PF01154_consen 161 GAGAVAMLIGPNAP 174 (174)
T ss_dssp EEEEEEEEEECS-S
T ss_pred cceeEEEEecCCCC
Confidence 99999999999865
|
Hydroxymethylglutaryl-CoA synthase (2.3.3.10 from EC) catalyses the condensation of acetyl-CoA with acetoacetyl-CoA to produce HMG-CoA and CoA, the second reaction in the mevalonate-dependent isoprenoid biosynthesis pathway. HMG-CoA synthase contains an important catalytic cysteine residue that acts as a nucleophile in the first step of the reaction: the acetylation of the enzyme by acetyl-CoA (its first substrate) to produce an acetyl-enzyme thioester, releasing the reduced coenzyme A. The subsequent nucleophilic attack on acetoacetyl-CoA (its second substrate) leads to the formation of HMG-CoA []. HMG-CoA synthase occurs in eukaryotes, archaea and certain bacteria []. In vertebrates, there are two isozymes located in different subcellular compartments: a cytosolic form that is the starting point of the mevalonate pathway (leads to cholesterol and other sterolic and isoprenoid compounds), and a mitochondrial form responsible for ketone body biosynthesis. HMG-CoA is also found in other eukaryotes such as insects, plants and fungi []. In bacteria, isoprenoid precursors are generally synthesised via an alternative, non-mevalonate pathway, however a number of Gram-positive pathogens utilise a mevalonate pathway involving HMG-CoA synthase that is parallel to that found in eukaryotes [, ]. This entry represents the N-terminal domain of HMG-CoA synthase enzymes from both eukaryotes and prokaryotes.; GO: 0004421 hydroxymethylglutaryl-CoA synthase activity, 0008299 isoprenoid biosynthetic process; PDB: 1X9E_B 2HDB_B 2WYA_C 2P8U_A 3V4X_A 3V4N_C 3LEH_A 1TXT_D 1TVZ_A 2FA0_A .... |
| >PRK05963 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-47 Score=383.19 Aligned_cols=304 Identities=17% Similarity=0.198 Sum_probs=240.3
Q ss_pred eeEEeEEEEecCCceeehhHHhhhhCCCcCeeEEeccceEeeccCCCCCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEec
Q 012253 8 NVGILALDIYFPPTCVLQEALEVHDGVSKGKYTVGLGQDCMAFCSEVEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSE 87 (467)
Q Consensus 8 ~vgI~ai~~y~P~~~v~~~el~~~~g~~~~k~~~Gig~r~~av~~~~Ed~~~ma~~Aa~~aL~~agi~~~~Id~Li~~Te 87 (467)
.++|.+++.|+|+++|+++|+++..|.+++++...+|.+++.++.++|++.+||++||++||+++|++|++||+||++|+
T Consensus 3 ~~~I~~~g~~lP~~~v~~~~~~~~~~~~~~~i~~~~Gi~~r~~~~~~e~~~~la~~Aa~~aL~~ag~~~~~Id~li~~t~ 82 (326)
T PRK05963 3 SSRIAGFGHAVPDRRVENAEIEAQLGLETGWIERRTGIRCRRWAAPDETLSDLAASAGDMALSDAGIERSDIALTLLATS 82 (326)
T ss_pred ccEEEEEEEECCCCeecHHHHHHHcCCCHHHhhhccCCeEEEEcCCCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEECC
Confidence 58999999999999999999999999988888544455555567889999999999999999999999999999999999
Q ss_pred cCCCCCCcHHHHHHHHhcccCCCCeeEEeeCCcChHHHHHHHHHHHHHHhCCCCCCEEEEEEeeccc-ccCC---CCCCc
Q 012253 88 TVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDSAV-YAEG---PARPT 163 (467)
Q Consensus 88 s~~~~~ps~a~~v~~~Lgl~G~~~~~~~di~~aC~gg~~AL~~A~~~l~a~~~~~~~aLVV~sD~~~-y~~~---~~~~t 163 (467)
++++..|+.+.+|+++||+ +++.+||++++|+|++.||++|.++|+++ . ++||||++|... ..+. .....
T Consensus 83 ~~d~~~p~~a~~v~~~Lg~---~~~~~~di~~~C~g~~~aL~~A~~~l~~~--~-~~aLVv~~d~~s~~~~~~~~~~~~l 156 (326)
T PRK05963 83 TPDHLLPPSAPLLAHRLGL---QNSGAIDLAGACAGFLYALVLADGFVRAQ--G-KPVLVVAANILSRRINMAERASAVL 156 (326)
T ss_pred CCCCCCCcHHHHHHHHhCC---CCCceeeccchhhHHHHHHHHHHHHHHcC--C-CeEEEEEechhhccCCccccCceEE
Confidence 9988899999999999998 56889999999999999999999999987 3 899999999872 2222 12356
Q ss_pred cccceeEEEecCCCC--ceeecccccccccCccccc-ccCCCCC-------------CceecCcchHHHHHHHHHHHHHH
Q 012253 164 GGAAAVAMLIGPDAP--IAFESKLRGSHMSHAYDFY-KPNLASE-------------YPVVDGKLSQTCYLMALDSCYKY 227 (467)
Q Consensus 164 ~GdGAvA~Ll~~~~~--~~~~~~~~~~~~~~~~df~-~p~~~~~-------------~~~vdG~~s~~~y~~a~~~~~~~ 227 (467)
|||||+|+||++++. ..+......+.. +.+|++ .|..+.. +...+|+.....+.+.+.++++.
T Consensus 157 fGDgA~A~ll~~~~~~~~~~l~~~~~t~~-~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (326)
T PRK05963 157 FADAAGAVVLAPSAKANSGVLGSQLISDG-SHYDLIKIPAGGSARPFAPERDASEFLMTMQDGRAVFTEAVRMMSGASQN 235 (326)
T ss_pred EeecceEEEEEecCCCCCceEEEEEEEcC-CCCCeEEeCCCCcCCCCcccccccccceEecCCHHHHHHHHHHHHHHHHH
Confidence 899999999998653 111111111111 123322 2321111 12236666655555555555554
Q ss_pred HHHHHHhhhcCCCCccccceeccCCchHHHHHHHHHhhhhhhhccccCchhhHHhhhcCCCCCCCcchhhhhhhHHHHHH
Q 012253 228 FCQKFEKLEGRQFSMLDVDYFVFHSPYNKLVQKSFARLFFNDFLRNASSVDEIAKEKLAPYSTLSDVESYQSRDLEKASQ 307 (467)
Q Consensus 228 ~~~~~~~~~~~~~~~~d~d~~i~H~p~~k~~~k~~~~l~~~~~~~~~~~~~~~~~~~l~~~~g~~~e~~~~~~~~~k~~~ 307 (467)
+++ +++++++|||+|+|||++.++++++.++| ++++++. ..
T Consensus 236 ~L~------~~gl~~~did~~~~h~~~~~~~~~~~~~l------------------------~l~~~k~---------~~ 276 (326)
T PRK05963 236 VLA------SAAMTPQDIDRFFPHQANARIVDKVCETI------------------------GIPRAKA---------AS 276 (326)
T ss_pred HHH------HcCCCHHHCCEEEeCCCCHHHHHHHHHHc------------------------CCCHHHh---------hh
Confidence 443 45799999999999999999999998888 7887653 22
Q ss_pred HHHHHHhhhhcCCCcccccccCccccchHHHHHHHHHhhcCcCCCCCEEEEEEeccccceeeEEEEE
Q 012253 308 QVAKQLYDLKVQPSTLIPKQVGNMYTASLYAAFASLLHEKHSSLEGKRVIMFSYGSGLTATMFSLQL 374 (467)
Q Consensus 308 ~~~~~~~~~~~~~s~~~~~~~GN~~taS~~l~L~~~l~~~~~~~~G~~ill~syGsG~~~~~~~~~~ 374 (467)
++ +++||++|||+|++|..++++ +++++||+|+++++|+|+++++.+++|
T Consensus 277 ~l----------------~~~Gn~~sas~~~~L~~~~~~-~~~~~Gd~vll~~~G~G~~~~~~ll~~ 326 (326)
T PRK05963 277 TL----------------ETYGNSSAATIPLSLSLANLE-QPLREGERLLFAAAGAGMTGGAVVMRV 326 (326)
T ss_pred hH----------------HhhCcHHHHHHHHHHHHHHHh-CCCCCCCEEEEEEEehhhhheeeEEeC
Confidence 33 799999999999999999988 788899999999999999999999886
|
|
| >PRK12880 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-45 Score=371.78 Aligned_cols=305 Identities=20% Similarity=0.225 Sum_probs=234.8
Q ss_pred CCCCceeEEeEEEEecCCceeehhHH-hhhhCCCc---Cee--EEeccceEeeccCCCCCHHHHHHHHHHHHHHHcCCCc
Q 012253 3 SWHPKNVGILALDIYFPPTCVLQEAL-EVHDGVSK---GKY--TVGLGQDCMAFCSEVEDVISMSLTVVTSLLEKYKIDP 76 (467)
Q Consensus 3 ~~~~~~vgI~ai~~y~P~~~v~~~el-~~~~g~~~---~k~--~~Gig~r~~av~~~~Ed~~~ma~~Aa~~aL~~agi~~ 76 (467)
..+.++++|.++++|+|+++|+++++ .+..+.+. +++ .+||..|+ ++.++|++.+||++|+++||+++|+++
T Consensus 2 ~~~~~~~~I~~~g~~lP~~~v~~~~~~~~~~~~~~~~~~~i~~~~Gi~~R~--~~~~~e~~~~la~~Aa~~aL~~a~~~~ 79 (353)
T PRK12880 2 KTRFDKAKISGICVSVPEHKICIDDELESVFSNDIKTLKRMKKVIGLNTRY--ICDENTCVSDLGKHAANTLLQGLNIDK 79 (353)
T ss_pred cccccccEEEEEEEECCCeEecHHHHHHHhcCcchhhhhhhhhccCceEEE--eCCCCCCHHHHHHHHHHHHHHHcCCCH
Confidence 45678899999999999999999975 44443221 233 25666666 556789999999999999999999999
Q ss_pred CCcCEEEEEeccCCCCCCcHHHHHHHHhcccCCCCeeEEeeCCcChHHHHHHHHHHHHHHhCCCCCCEEEEEEeecc-cc
Q 012253 77 TQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDSA-VY 155 (467)
Q Consensus 77 ~~Id~Li~~Tes~~~~~ps~a~~v~~~Lgl~G~~~~~~~di~~aC~gg~~AL~~A~~~l~a~~~~~~~aLVV~sD~~-~y 155 (467)
+|||+||++|+|+++..|+++++|+++||+ ++++.+||+++||+|++.||++|.+|+++| +.+ ||||++|.+ ++
T Consensus 80 ~dId~lI~~t~t~d~~~P~~a~~v~~~Lg~--~~~~~~~di~~~C~g~~~aL~~A~~~i~~~--~~~-~LVv~~e~~S~~ 154 (353)
T PRK12880 80 NSLDALIVVTQSPDFFMPSTACYLHQLLNL--SSKTIAFDLGQACAGYLYGLFVAHSLIQSG--LGK-ILLICGDTLSKF 154 (353)
T ss_pred HHCCEEEEEcCCCCCCCCcHHHHHHHHhCC--CCCceEEehhhhhHHHHHHHHHHHHHHHcC--CCC-EEEEEehhhhcc
Confidence 999999999999999999999999999998 568999999999999999999999999999 448 999999987 33
Q ss_pred cCC---CCCCccccceeEEEecCCCC--ceeecccccccccCcccccccCCC----------------------CCCcee
Q 012253 156 AEG---PARPTGGAAAVAMLIGPDAP--IAFESKLRGSHMSHAYDFYKPNLA----------------------SEYPVV 208 (467)
Q Consensus 156 ~~~---~~~~t~GdGAvA~Ll~~~~~--~~~~~~~~~~~~~~~~df~~p~~~----------------------~~~~~v 208 (467)
.++ ...++|||||+|+||++++. ..+.....+.+.. ....|..+ ..+..+
T Consensus 155 ~~~~d~~~~~lFGDGAaA~vl~~~~~~~~~~~~~~~~~~~~---~~~~p~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (353)
T PRK12880 155 IHPKNMNLAPIFGDGVSATLIEKTDFNEAFFELGSDGKYFD---KLIIPKGAMRIPKADIFNDDSLMQTEEFRQLENLYM 231 (353)
T ss_pred CCcccCCceeeecccceEEEEEecCCCCceEEEEecCCCCC---eEEecCCCcCCCccccccccccccccccccCceEEE
Confidence 333 23578999999999987542 1111001111111 01111100 112357
Q ss_pred cCcchHHHHHHHHHHHHHHHHHHHHhhhcCCCCccccceeccCCchHHHHHHHHHhhhhhhhccccCchhhHHhhhcCCC
Q 012253 209 DGKLSQTCYLMALDSCYKYFCQKFEKLEGRQFSMLDVDYFVFHSPYNKLVQKSFARLFFNDFLRNASSVDEIAKEKLAPY 288 (467)
Q Consensus 209 dG~~s~~~y~~a~~~~~~~~~~~~~~~~~~~~~~~d~d~~i~H~p~~k~~~k~~~~l~~~~~~~~~~~~~~~~~~~l~~~ 288 (467)
+|+.....+.+.+..+++.+++ ++|++.+|||+|++||++.+|++.+.++|
T Consensus 232 ~g~~v~~~~~~~~~~~i~~~L~------~~gl~~~did~~v~HQ~~~~i~~~i~~~L----------------------- 282 (353)
T PRK12880 232 DGANIFNMALECEPKSFKEILE------FSKVDEKDIAFHLFHQSNAYLVDCIKEEL----------------------- 282 (353)
T ss_pred cCHHHHHHHHHHHHHHHHHHHH------HcCCCHHHCCEEEECCCCHHHHHHHHHHh-----------------------
Confidence 7887755555555555555554 44799999999999999999999999988
Q ss_pred CCCCcchhhhhhhHHHHHHHHHHHHhhhhcCCCcccccccCccccchHHHHHHHHHhhcCcCCCCCEEEEEEecccccee
Q 012253 289 STLSDVESYQSRDLEKASQQVAKQLYDLKVQPSTLIPKQVGNMYTASLYAAFASLLHEKHSSLEGKRVIMFSYGSGLTAT 368 (467)
Q Consensus 289 ~g~~~e~~~~~~~~~k~~~~~~~~~~~~~~~~s~~~~~~~GN~~taS~~l~L~~~l~~~~~~~~G~~ill~syGsG~~~~ 368 (467)
++++++.. . .+.+++|||+|||+|++|..+++. +++ +++|.++|+|++|+
T Consensus 283 -gl~~ek~~---------~---------------~~l~~~GNtssasip~~L~~~~~~-~~~----~~ll~~~G~G~s~g 332 (353)
T PRK12880 283 -KLNDDKVP---------N---------------FIMEKYANLSACSLPALLCELDTP-KEF----KASLSAFGAGLSWG 332 (353)
T ss_pred -CCCHHHhh---------h---------------hhHHhhCCHHHHHHHHHHHHHHHc-CCc----EEEEEEEchhhhhe
Confidence 78877531 1 123799999999999999999876 443 59999999999999
Q ss_pred eEEEEEec
Q 012253 369 MFSLQLQE 376 (467)
Q Consensus 369 ~~~~~~~~ 376 (467)
+.+++|.+
T Consensus 333 ~~ll~~~~ 340 (353)
T PRK12880 333 SAVLNFKD 340 (353)
T ss_pred EeEEEECC
Confidence 99999976
|
|
| >PRK12879 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-44 Score=362.98 Aligned_cols=306 Identities=16% Similarity=0.204 Sum_probs=238.7
Q ss_pred ceeEEeEEEEecCCceeehhHHhhhhCCCcCee--EEeccceEeeccCCCCCHHHHHHHHHHHHHHHcCCCcCCcCEEEE
Q 012253 7 KNVGILALDIYFPPTCVLQEALEVHDGVSKGKY--TVGLGQDCMAFCSEVEDVISMSLTVVTSLLEKYKIDPTQIGRLEV 84 (467)
Q Consensus 7 ~~vgI~ai~~y~P~~~v~~~el~~~~g~~~~k~--~~Gig~r~~av~~~~Ed~~~ma~~Aa~~aL~~agi~~~~Id~Li~ 84 (467)
++++|.++++|+|+++++++|+++..+.+.+++ ++|+.+|+ ++.++|+..+|+++|++++|+++|+++++||.||+
T Consensus 3 ~~~~I~~ig~~~P~~~v~~~e~~~~~~~~~~~i~~~~Gi~~r~--~~~~~~~~~~la~~A~~~al~~ag~~~~~Id~li~ 80 (325)
T PRK12879 3 SYARITGIGTYVPPRVLTNDDLETFIDTSDEWIVQRTGIKERR--IAHVEEYTSDLAIKAAERALARAGLDAEDIDLIIV 80 (325)
T ss_pred CCCEEEEEEEECCCcEEcHHHHHHhcCCCHHHhhhccCceEEE--ECCCCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEE
Confidence 579999999999999999999999988766665 35666666 55788999999999999999999999999999999
Q ss_pred EeccCCCCCCcHHHHHHHHhcccCCCCeeEEeeCCcChHHHHHHHHHHHHHHhCCCCCCEEEEEEeecc-cccCCC---C
Q 012253 85 GSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDSA-VYAEGP---A 160 (467)
Q Consensus 85 ~Tes~~~~~ps~a~~v~~~Lgl~G~~~~~~~di~~aC~gg~~AL~~A~~~l~a~~~~~~~aLVV~sD~~-~y~~~~---~ 160 (467)
+|+++++..|+.+.+|++.||+ +++.+++++++|+|++.||.+|.++|++|.. ++||||++|.+ .+.+.. .
T Consensus 81 ~~~~~~~~~~~~a~~l~~~lg~---~~~~~~~v~~~C~~~~~al~~A~~~l~~g~~--~~~Lvv~~e~~s~~~~~~~~~~ 155 (325)
T PRK12879 81 ATTTPDYLFPSTASQVQARLGI---PNAAAFDINAACAGFLYGLETANGLITSGLY--KKVLVIGAERLSKVTDYTDRTT 155 (325)
T ss_pred EcCCCCCCCChHHHHHHHHhCC---CCCcEEEECccchHHHHHHHHHHHHHHcCCC--CEEEEEEehhhcCcCCccccCc
Confidence 9999888899999999999998 4588999999999999999999999999954 99999999987 332222 2
Q ss_pred CCccccceeEEEecCCCC-ceeecccccccccCcccccccCCCC----------CCceecCcchHHHHHHHHHHHHHHHH
Q 012253 161 RPTGGAAAVAMLIGPDAP-IAFESKLRGSHMSHAYDFYKPNLAS----------EYPVVDGKLSQTCYLMALDSCYKYFC 229 (467)
Q Consensus 161 ~~t~GdGAvA~Ll~~~~~-~~~~~~~~~~~~~~~~df~~p~~~~----------~~~~vdG~~s~~~y~~a~~~~~~~~~ 229 (467)
..++||||+|+||++++. ..+.....++.......++.|..+. .+..++|+.......+.+..+++.++
T Consensus 156 ~~~~GDgAaA~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L 235 (325)
T PRK12879 156 CILFGDGAGAVVLEATENEPGFIDYVLGTDGDGGDILYRTGLGTTMDRDALSGDGYIVQNGREVFKWAVRTMPKGARQVL 235 (325)
T ss_pred eEEEeecceEEEEEecCCCCCeEEEEEEEcCCCCCeEEEcCCCCCCCccccccCccEEEcCHHHHHHHHHHHHHHHHHHH
Confidence 356899999999998763 2221111111111111222222211 12345665442222333334444444
Q ss_pred HHHHhhhcCCCCccccceeccCCchHHHHHHHHHhhhhhhhccccCchhhHHhhhcCCCCCCCcchhhhhhhHHHHHHHH
Q 012253 230 QKFEKLEGRQFSMLDVDYFVFHSPYNKLVQKSFARLFFNDFLRNASSVDEIAKEKLAPYSTLSDVESYQSRDLEKASQQV 309 (467)
Q Consensus 230 ~~~~~~~~~~~~~~d~d~~i~H~p~~k~~~k~~~~l~~~~~~~~~~~~~~~~~~~l~~~~g~~~e~~~~~~~~~k~~~~~ 309 (467)
+++++.++|||+|++||++.++++...++| |+++++.+ .++
T Consensus 236 ------~~~g~~~~did~~~~h~~~~~~~~~~~~~l------------------------g~~~~~~~---------~~~ 276 (325)
T PRK12879 236 ------EKAGLTKDDIDWVIPHQANLRIIESLCEKL------------------------GIPMEKTL---------VSV 276 (325)
T ss_pred ------HHcCCCHHHCCEEEECCCCHHHHHHHHHHc------------------------CCCHHHhh---------hhH
Confidence 345799999999999999999999888877 77776532 122
Q ss_pred HHHHhhhhcCCCcccccccCccccchHHHHHHHHHhhcCcCCCCCEEEEEEeccccceeeEEEEEe
Q 012253 310 AKQLYDLKVQPSTLIPKQVGNMYTASLYAAFASLLHEKHSSLEGKRVIMFSYGSGLTATMFSLQLQ 375 (467)
Q Consensus 310 ~~~~~~~~~~~s~~~~~~~GN~~taS~~l~L~~~l~~~~~~~~G~~ill~syGsG~~~~~~~~~~~ 375 (467)
+++||++|+|+|++|.+++++ +.+++|++|+|++||+|+++++++++|+
T Consensus 277 ----------------~~~Gn~~sas~~~~L~~~~~~-g~~~~Gd~vll~~~G~G~~~~~~l~~~~ 325 (325)
T PRK12879 277 ----------------EYYGNTSAATIPLALDLALEQ-GKIKPGDTLLLYGFGAGLTWAALLVKWG 325 (325)
T ss_pred ----------------hhhCchHHHHHHHHHHHHHHc-CCCCCCCEEEEEEEchhhhhEEEEEEeC
Confidence 799999999999999999998 7889999999999999999999999984
|
|
| >PRK09258 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-44 Score=366.45 Aligned_cols=308 Identities=20% Similarity=0.216 Sum_probs=242.6
Q ss_pred CCceeEEeEEEEecCCceeehhHHhhhh-------CCCcCeeE--EeccceEeeccCCCCCHHHHHHHHHHHHHHHcCCC
Q 012253 5 HPKNVGILALDIYFPPTCVLQEALEVHD-------GVSKGKYT--VGLGQDCMAFCSEVEDVISMSLTVVTSLLEKYKID 75 (467)
Q Consensus 5 ~~~~vgI~ai~~y~P~~~v~~~el~~~~-------g~~~~k~~--~Gig~r~~av~~~~Ed~~~ma~~Aa~~aL~~agi~ 75 (467)
+..+|+|.+++.|+|+++++++++++.. +.+++++. +|+.+|+ +.++++++.+|+++|+++||+++|++
T Consensus 2 ~~~~v~I~~~g~~lP~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~Gi~~R~--~~~~~~~~~~la~~Aa~~aL~~ag~~ 79 (338)
T PRK09258 2 KYSNVAILSLAYELAPVVVTSSEIEERLAPLYERLRLPPGQLEALTGIRERR--WWPEGTQLSDGAIAAGRKALAEAGID 79 (338)
T ss_pred cccceEEEEEEecCCCccCcHHHHHHHhhhcccccCCChhHhhhhcCceeEe--cCCCCCCHHHHHHHHHHHHHHHcCCC
Confidence 4577999999999999999999999863 34555563 5666666 45778999999999999999999999
Q ss_pred cCCcCEEEEEeccCCCCCCcHHHHHHHHhcccCCCCeeEEeeCCcChHHHHHHHHHHHHHHhCCCCCCEEEEEEeeccc-
Q 012253 76 PTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDSAV- 154 (467)
Q Consensus 76 ~~~Id~Li~~Tes~~~~~ps~a~~v~~~Lgl~G~~~~~~~di~~aC~gg~~AL~~A~~~l~a~~~~~~~aLVV~sD~~~- 154 (467)
+++||+|+++|+++++..|+++.+|++.||+ ++++.++|+.++|+|++.||++|.++|++|.. ++||||++|.+.
T Consensus 80 ~~~Id~li~~s~~~~~~~p~~a~~v~~~lgl--~~~~~~~~v~~~C~~~~~al~~A~~~i~~g~~--~~~Lvv~~e~~s~ 155 (338)
T PRK09258 80 PSDIGLLINTSVCRDYLEPATACRVHHNLGL--PKSCANFDVSNACLGFLNGMLDAANMIELGQI--DYALVVSGESARE 155 (338)
T ss_pred HHHCCEEEEEcCCCCCCCChHHHHHHHHcCC--CCCCceeehhhhhHHHHHHHHHHHHHHHcCCC--CEEEEEEecccch
Confidence 9999999999999988899999999999998 55789999999999999999999999999954 999999999872
Q ss_pred ccCC-------CC-----------CCccccceeEEEecCCCCceeecccccccccCcccccccC-CCCCCceecCcchHH
Q 012253 155 YAEG-------PA-----------RPTGGAAAVAMLIGPDAPIAFESKLRGSHMSHAYDFYKPN-LASEYPVVDGKLSQT 215 (467)
Q Consensus 155 y~~~-------~~-----------~~t~GdGAvA~Ll~~~~~~~~~~~~~~~~~~~~~df~~p~-~~~~~~~vdG~~s~~ 215 (467)
+.+. +. ..++||||+|+||++++...-...+.+..+....+++... .+..+..++++....
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~GDGA~A~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (338)
T PRK09258 156 IVEATIDRLLAPETTREDFAQSFATLTLGSGAAAAVLTRGSLHPRGHRLLGGVTRAATEHHELCQGGRDGMRTDAVGLLK 235 (338)
T ss_pred hccchhhhhccCccchhhhhhccceEEecccceEEEEecCCCCCCcceeeeeeeecCCCcccccccCccceEEcHHHHHH
Confidence 1110 11 2468999999999986421000011122221112222111 112345678887776
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCCCccccceeccCCchHHHHHHHHHhhhhhhhccccCchhhHHhhhcCCCCCCCcch
Q 012253 216 CYLMALDSCYKYFCQKFEKLEGRQFSMLDVDYFVFHSPYNKLVQKSFARLFFNDFLRNASSVDEIAKEKLAPYSTLSDVE 295 (467)
Q Consensus 216 ~y~~a~~~~~~~~~~~~~~~~~~~~~~~d~d~~i~H~p~~k~~~k~~~~l~~~~~~~~~~~~~~~~~~~l~~~~g~~~e~ 295 (467)
.+...+..+++.++++ ++++++|||+|++||++.++++.+.++| ++|+++
T Consensus 236 ~~~~~~~~~~~~~L~~------~g~~~~did~~i~H~~~~~~~~~~~~~l------------------------gl~~~k 285 (338)
T PRK09258 236 EGVELAVDTWEAFLAQ------LGWAVEQVDRVICHQVGAAHTRAILKAL------------------------GIDPEK 285 (338)
T ss_pred HHHHHHHHHHHHHHHH------cCCCHHHCCEEecCCCCHHHHHHHHHHh------------------------CCCHHH
Confidence 6766666666666544 4689999999999999999999998887 787775
Q ss_pred hhhhhhHHHHHHHHHHHHhhhhcCCCcccccccCccccchHHHHHHHHHhhcCcCCCCCEEEEEEeccccceeeEEEEE
Q 012253 296 SYQSRDLEKASQQVAKQLYDLKVQPSTLIPKQVGNMYTASLYAAFASLLHEKHSSLEGKRVIMFSYGSGLTATMFSLQL 374 (467)
Q Consensus 296 ~~~~~~~~k~~~~~~~~~~~~~~~~s~~~~~~~GN~~taS~~l~L~~~l~~~~~~~~G~~ill~syGsG~~~~~~~~~~ 374 (467)
.+ .++ +++|||+++|+|++|++++++ +++++|++|++++||+|+++++++++|
T Consensus 286 ~~---------~~~----------------~~~GN~~sas~~~~L~~~~~~-g~~~~Gd~vll~~~G~G~s~~~~~~~~ 338 (338)
T PRK09258 286 VF---------TTF----------------PTLGNMGPASLPITLAMAAEE-GFLKPGDRVALLGIGSGLNCSMLEVKW 338 (338)
T ss_pred ce---------ehH----------------hhhCCcHHhHHHHHHHHHHHh-CCCCCCCEEEEEEechhHhhHhHeeeC
Confidence 42 122 699999999999999999988 788999999999999999999999886
|
|
| >CHL00203 fabH 3-oxoacyl-acyl-carrier-protein synthase 3; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-44 Score=359.81 Aligned_cols=304 Identities=20% Similarity=0.263 Sum_probs=235.3
Q ss_pred ceeEEeEEEEecCCceeehhHHhhhhCCCcCeeE--EeccceEeeccCCCCCHHHHHHHHHHHHHHHcCCCcCCcCEEEE
Q 012253 7 KNVGILALDIYFPPTCVLQEALEVHDGVSKGKYT--VGLGQDCMAFCSEVEDVISMSLTVVTSLLEKYKIDPTQIGRLEV 84 (467)
Q Consensus 7 ~~vgI~ai~~y~P~~~v~~~el~~~~g~~~~k~~--~Gig~r~~av~~~~Ed~~~ma~~Aa~~aL~~agi~~~~Id~Li~ 84 (467)
|.|+|.++++|+|+++|+++|+++..+.+..++. +|+..|+ ++.++++..+|+.+|++++|+++|++|++||.||+
T Consensus 1 ~~v~I~~~g~~lP~~~v~~~e~~~~~~~~~~~i~~~~gi~~r~--~~~~~~~~~~la~~A~~~aL~~ag~~~~dId~vi~ 78 (326)
T CHL00203 1 MGVHILSTGSSVPNFSVENQQFEDIIETSDHWISTRTGIKKRH--LAPSSTSLTKLAAEAANKALDKAHMDPLEIDLIIL 78 (326)
T ss_pred CccEEEEEEEECCCeEEcHHHHHHhcCCChhhEeeccCeEEEE--eCCCCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEE
Confidence 4689999999999999999999999987666664 5666655 55789999999999999999999999999999999
Q ss_pred EeccCCCCCCcHHHHHHHHhcccCCCCeeEEeeCCcChHHHHHHHHHHHHHHhCCCCCCEEEEEEeecc-cccCCC---C
Q 012253 85 GSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDSA-VYAEGP---A 160 (467)
Q Consensus 85 ~Tes~~~~~ps~a~~v~~~Lgl~G~~~~~~~di~~aC~gg~~AL~~A~~~l~a~~~~~~~aLVV~sD~~-~y~~~~---~ 160 (467)
+|+++.+.. +.+.+|++.||+ .++.++|+.++|+|++.||++|..+|++|.. +++|||++|.+ .+.+.. .
T Consensus 79 ~s~~~~~~~-~~~~~v~~~Lg~---~~~~~~~v~~~Casg~~al~~A~~~i~sg~~--~~~Lvv~~e~~s~~~~~~~~~~ 152 (326)
T CHL00203 79 ATSTPDDLF-GSASQLQAEIGA---TRAVAFDITAACSGFILALVTATQFIQNGSY--KNILVVGADTLSKWIDWSDRKT 152 (326)
T ss_pred EeCCCCCCC-chHHHHHHHhCC---CCCceeeecccchhHHHHHHHHHHHHHcCCC--CEEEEEEehhhhCcCCcccCCc
Confidence 998887654 567899999997 5688999999999999999999999999965 99999999997 332322 3
Q ss_pred CCccccceeEEEecCCCCc---eeecccccccccCcccc-c------------ccCCCCCCceecCcchHHHHHHHHHHH
Q 012253 161 RPTGGAAAVAMLIGPDAPI---AFESKLRGSHMSHAYDF-Y------------KPNLASEYPVVDGKLSQTCYLMALDSC 224 (467)
Q Consensus 161 ~~t~GdGAvA~Ll~~~~~~---~~~~~~~~~~~~~~~df-~------------~p~~~~~~~~vdG~~s~~~y~~a~~~~ 224 (467)
..+|||||+|+||++.+.. .+.....+.+... ..+ . .|.....+..++|+.. |..++...
T Consensus 153 ~~~fgDga~A~ll~~~~~~~~~~~~~~t~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~---~~~~~~~~ 228 (326)
T CHL00203 153 CILFGDGAGAAIIGASYENSILGFKLCTDGKLNSH-LQLMNKPVNNQSFGTTKLPQGQYQSISMNGKEV---YKFAVFQV 228 (326)
T ss_pred eEEEcceeeEEEEEEcCCCCeEEEEEEEcCCCcce-EEecCCCCCcccccccccccCCcceEEECCHHH---HHHHHHHH
Confidence 4678999999999986531 1111011111010 001 0 1111112334667655 33333333
Q ss_pred HHHHHHHHHhhhcCCCCccccceeccCCchHHHHHHHHHhhhhhhhccccCchhhHHhhhcCCCCCCCcchhhhhhhHHH
Q 012253 225 YKYFCQKFEKLEGRQFSMLDVDYFVFHSPYNKLVQKSFARLFFNDFLRNASSVDEIAKEKLAPYSTLSDVESYQSRDLEK 304 (467)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~d~d~~i~H~p~~k~~~k~~~~l~~~~~~~~~~~~~~~~~~~l~~~~g~~~e~~~~~~~~~k 304 (467)
.+.+.+.+ ++++++++|||+|++||++.++++.+.++| |+|+++..
T Consensus 229 ~~~i~~~L---~~~g~~~~did~~~~hq~~~~~~~~~~~~l------------------------gl~~~k~~------- 274 (326)
T CHL00203 229 PAVIIKCL---NALNISIDEVDWFILHQANKRILEAIANRL------------------------SVPNSKMI------- 274 (326)
T ss_pred HHHHHHHH---HHcCCCHHHCCEEEECCCCHHHHHHHHHHh------------------------CCCHHHhh-------
Confidence 33333322 456899999999999999999999998888 78877542
Q ss_pred HHHHHHHHHhhhhcCCCcccccccCccccchHHHHHHHHHhhcCcCCCCCEEEEEEeccccceeeEEEEEe
Q 012253 305 ASQQVAKQLYDLKVQPSTLIPKQVGNMYTASLYAAFASLLHEKHSSLEGKRVIMFSYGSGLTATMFSLQLQ 375 (467)
Q Consensus 305 ~~~~~~~~~~~~~~~~s~~~~~~~GN~~taS~~l~L~~~l~~~~~~~~G~~ill~syGsG~~~~~~~~~~~ 375 (467)
.++ +++||++|||++++|++++++ +++++|++|+|+++|+|+++++.+++|+
T Consensus 275 --~~l----------------~~~Gn~~sasi~~~L~~~~~~-g~~~~Gd~vll~~~G~G~s~~~~v~~~~ 326 (326)
T CHL00203 275 --TNL----------------EKYGNTSAASIPLALDEAIQN-NKIQPGQIIVLSGFGAGLTWGAIVLKWK 326 (326)
T ss_pred --hHH----------------HhhCcHHHHHHHHHHHHHHHh-CCCCCCCEEEEEEEchhhhheEEEEEeC
Confidence 233 799999999999999999998 7889999999999999999999999985
|
|
| >PRK07204 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-44 Score=361.08 Aligned_cols=304 Identities=14% Similarity=0.147 Sum_probs=237.0
Q ss_pred ceeEEeEEEEecCCceeehhHHhhhhCCCcCeeE--EeccceEeeccCCCCCHHHHHHHHHHHHHHHcCCCcCCcCEEEE
Q 012253 7 KNVGILALDIYFPPTCVLQEALEVHDGVSKGKYT--VGLGQDCMAFCSEVEDVISMSLTVVTSLLEKYKIDPTQIGRLEV 84 (467)
Q Consensus 7 ~~vgI~ai~~y~P~~~v~~~el~~~~g~~~~k~~--~Gig~r~~av~~~~Ed~~~ma~~Aa~~aL~~agi~~~~Id~Li~ 84 (467)
++++|.++++|+|+++++++++++..+.+.+++. +|+..|+ +.. +|++.+|+.+|++++|+++|++|+|||+||+
T Consensus 3 ~~~~I~~~g~~lP~~~v~~~~~~~~~~~~~~~i~~~~Gi~~R~--~~~-~~~~~~la~~Aa~~aL~~ag~~~~dId~li~ 79 (329)
T PRK07204 3 RYISIKGIGTYLPKRKVDSLELDKKLDLPEGWVLKKSGVKTRH--FVD-GETSSYMGAEAAKKAVEDAKLTLDDIDCIIC 79 (329)
T ss_pred CCcEEEEEEEeCCCceecHHHHHHhhCCCHhHhhhccCceEEe--ecC-CCCHHHHHHHHHHHHHHHcCCCHHHCCEEEE
Confidence 4589999999999999999999999998877774 4555555 445 8999999999999999999999999999999
Q ss_pred EeccCCCCCCcHHHHHHHHhcccCCC-CeeEEeeCCcChHHHHHHHHHHHHHHhCCCCCCEEEEEEeeccc-ccCCC---
Q 012253 85 GSETVIDKSKSIKTFLMQIFEKYGNT-DIEGVDSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDSAV-YAEGP--- 159 (467)
Q Consensus 85 ~Tes~~~~~ps~a~~v~~~Lgl~G~~-~~~~~di~~aC~gg~~AL~~A~~~l~a~~~~~~~aLVV~sD~~~-y~~~~--- 159 (467)
+|+++.+..|+.+.+|++.||+ .+ .+.++|++++|+|++.||.+|..++++|.. ++||||++|.+. +.+..
T Consensus 80 ~~~~~~~~~p~~a~~v~~~lgl--~~~~~~~~~v~~~C~~~~~al~~a~~~l~~g~~--~~~Lvv~~e~~s~~~~~~~~~ 155 (329)
T PRK07204 80 ASGTIQQAIPCTASLIQEQLGL--QHSGIPCFDINSTCLSFITALDTISYAIECGRY--KRVLIISSEISSVGLNWGQNE 155 (329)
T ss_pred ECCCCCCCCccHHHHHHHHhCC--CCCCceEEEccchhHHHHHHHHHHHHHHHCCCC--CEEEEEEeccccCCCCcccCc
Confidence 9999988889999999999998 33 479999999999999999999999999955 999999999973 22322
Q ss_pred CCCccccceeEEEecCCCC-ceeecccccccccCcccc---------------cccCCCCCCceecCcchHHHHHHHHHH
Q 012253 160 ARPTGGAAAVAMLIGPDAP-IAFESKLRGSHMSHAYDF---------------YKPNLASEYPVVDGKLSQTCYLMALDS 223 (467)
Q Consensus 160 ~~~t~GdGAvA~Ll~~~~~-~~~~~~~~~~~~~~~~df---------------~~p~~~~~~~~vdG~~s~~~y~~a~~~ 223 (467)
....|||||+|+||++++. ..+......++... .++ +.+.....+..++|+.......+.+..
T Consensus 156 ~~~lfGDGAaA~ll~~~~~~~~il~~~~~t~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (329)
T PRK07204 156 SCILFGDGAAAVVITKGDHSSRILASHMETYSSG-AHLSEIRGGGTMIHPREYSEERKEDFLFDMNGRAIFKLSSKYLMK 234 (329)
T ss_pred ceEEEecccEEEEEEEcCCCCcEEEEEEEEecCC-CCceEEecCCcCCCCcccccccccCceEEECCHHHHHHHHHHHHH
Confidence 2356899999999998753 11111011111110 011 111101112345666654444445555
Q ss_pred HHHHHHHHHHhhhcCCCCccccceeccCCchHHHHHHHHHhhhhhhhccccCchhhHHhhhcCCCCCCCcchhhhhhhHH
Q 012253 224 CYKYFCQKFEKLEGRQFSMLDVDYFVFHSPYNKLVQKSFARLFFNDFLRNASSVDEIAKEKLAPYSTLSDVESYQSRDLE 303 (467)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~d~d~~i~H~p~~k~~~k~~~~l~~~~~~~~~~~~~~~~~~~l~~~~g~~~e~~~~~~~~~ 303 (467)
+++.+++ +++++++|||+|++||++.++++.+.++| ++|+++.
T Consensus 235 ~i~~~L~------~~gl~~~did~~~~H~~~~~~~~~i~~~l------------------------~l~~e~~------- 277 (329)
T PRK07204 235 FIDKLLM------DAGYTLADIDLIVPHQASGPAMRLIRKKL------------------------GVDEERF------- 277 (329)
T ss_pred HHHHHHH------HcCCCHHHCCEEEeCCCCHHHHHHHHHHc------------------------CCCHHHh-------
Confidence 5555554 45799999999999999999999888877 7776643
Q ss_pred HHHHHHHHHHhhhhcCCCcccccccCccccchHHHHHHHHHhhcCcCCCCCEEEEEEeccccceeeEEEEE
Q 012253 304 KASQQVAKQLYDLKVQPSTLIPKQVGNMYTASLYAAFASLLHEKHSSLEGKRVIMFSYGSGLTATMFSLQL 374 (467)
Q Consensus 304 k~~~~~~~~~~~~~~~~s~~~~~~~GN~~taS~~l~L~~~l~~~~~~~~G~~ill~syGsG~~~~~~~~~~ 374 (467)
+.++ +++||++++|+|++|.+++++ +++++|++|+|+++|+|+++++.+++|
T Consensus 278 --~~~~----------------~~~Gn~~sas~~~~L~~~~~~-g~~~~Gd~vll~~~G~G~s~~~~ll~~ 329 (329)
T PRK07204 278 --VTIF----------------EDHGNMIAASIPVALFEAIKQ-KKVQRGNKILLLGTSAGLSIGGILLEY 329 (329)
T ss_pred --hhhH----------------hhhCcHHHHHHHHHHHHHHHc-CCCCCCCEEEEEEEchhhhheeeEEeC
Confidence 2233 799999999999999999998 788999999999999999999999875
|
|
| >PLN02326 3-oxoacyl-[acyl-carrier-protein] synthase III | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-43 Score=358.61 Aligned_cols=304 Identities=15% Similarity=0.187 Sum_probs=233.4
Q ss_pred ceeEEeEEEEecCCceeehhHHhhhhCCCcCeeE--EeccceEeeccCCCCCHHHHHHHHHHHHHHHcCCCcCCcCEEEE
Q 012253 7 KNVGILALDIYFPPTCVLQEALEVHDGVSKGKYT--VGLGQDCMAFCSEVEDVISMSLTVVTSLLEKYKIDPTQIGRLEV 84 (467)
Q Consensus 7 ~~vgI~ai~~y~P~~~v~~~el~~~~g~~~~k~~--~Gig~r~~av~~~~Ed~~~ma~~Aa~~aL~~agi~~~~Id~Li~ 84 (467)
++++|.+++.|+|+++++++|+.+..+.+++++. +|+.+|+ ++.++|++.+|+++|+++||+++|++++|||+||+
T Consensus 46 ~~~~I~g~g~~lP~~~v~n~el~~~~~~~~~~i~~~tGi~~R~--~~~~~~~~~~La~~Aa~~aL~~agi~~~dId~li~ 123 (379)
T PLN02326 46 SGSKLVGCGSAVPKLLITNDDLSKLVDTSDEWIATRTGIRNRR--VLSGDETLTSLAVEAAKKALEMAGVDPEDVDLVLL 123 (379)
T ss_pred CCcEEEEEEEECCCceecHHHHHHhcCCchhheecccCcceEe--ecCCCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEE
Confidence 6799999999999999999999999887777763 5776665 55788999999999999999999999999999999
Q ss_pred EeccCCCCCCcHHHHHHHHhcccCCCCeeEEeeCCcChHHHHHHHHHHHHHHhCCCCCCEEEEEEeecc-cccCCCC---
Q 012253 85 GSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDSA-VYAEGPA--- 160 (467)
Q Consensus 85 ~Tes~~~~~ps~a~~v~~~Lgl~G~~~~~~~di~~aC~gg~~AL~~A~~~l~a~~~~~~~aLVV~sD~~-~y~~~~~--- 160 (467)
+|+++++. ++.+.+|++.||+ +++.++|++++|+|++.||++|..+|++|.. ++||||++|.. ++.++.+
T Consensus 124 ~s~~~~~~-~~~a~~v~~~LG~---~~~~~~dv~~~Ca~~~~aL~~A~~~l~~g~~--~~vLVv~~e~~s~~~~~~d~~~ 197 (379)
T PLN02326 124 CTSSPDDL-FGSAPQVQAALGC---TNALAFDLTAACSGFVLGLVTAARFIRGGGY--KNVLVIGADALSRYVDWTDRGT 197 (379)
T ss_pred EeCCCCcc-CcHHHHHHHHhCC---CCCceeeccccchHHHHHHHHHHHHHHcCCC--CEEEEEEechhcCCCCccccCc
Confidence 99988874 4679999999997 5789999999999999999999999999954 99999999997 5544433
Q ss_pred CCccccceeEEEecCCCC----c-eeecccccccccCc----ccc-----cccC----------CCCCCceecCcchHHH
Q 012253 161 RPTGGAAAVAMLIGPDAP----I-AFESKLRGSHMSHA----YDF-----YKPN----------LASEYPVVDGKLSQTC 216 (467)
Q Consensus 161 ~~t~GdGAvA~Ll~~~~~----~-~~~~~~~~~~~~~~----~df-----~~p~----------~~~~~~~vdG~~s~~~ 216 (467)
..+|||||+|+||++.+. + .+.....+.+.... .+. ..|. .+..+..++|+..
T Consensus 198 ~~lfGDGAaAvlL~~~~~~~~~i~~~~~~t~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v--- 274 (379)
T PLN02326 198 CILFGDGAGAVVLQACDDDEDGLLGFDMHSDGNGHKHLHATFKGEDDDSSGGNTNGVGDFPPKKASYSCIQMNGKEV--- 274 (379)
T ss_pred eEEEcceeEEEEEEEcCCCCCceEEEEEEEcCCCCCeEEecCCCCcccccccccccccccccccccccceEecCHHH---
Confidence 347899999999998642 1 11100011110000 000 0000 0001133555544
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCCCccccceeccCCchHHHHHHHHHhhhhhhhccccCchhhHHhhhcCCCCCCCcchh
Q 012253 217 YLMALDSCYKYFCQKFEKLEGRQFSMLDVDYFVFHSPYNKLVQKSFARLFFNDFLRNASSVDEIAKEKLAPYSTLSDVES 296 (467)
Q Consensus 217 y~~a~~~~~~~~~~~~~~~~~~~~~~~d~d~~i~H~p~~k~~~k~~~~l~~~~~~~~~~~~~~~~~~~l~~~~g~~~e~~ 296 (467)
|..++....+.+.+.+ ++++++.+|||+|++||++.++++.+.++| |+++++.
T Consensus 275 ~~~~~~~~~~~i~~~L---~~~gl~~~dId~~v~Hq~n~~~~~~~~~~L------------------------gl~~ek~ 327 (379)
T PLN02326 275 FKFAVRCVPQVIESAL---QKAGLTAESIDWLLLHQANQRIIDAVAQRL------------------------GIPPEKV 327 (379)
T ss_pred HHHHHHHHHHHHHHHH---HHcCCCHHHCCEEEECCCCHHHHHHHHHHc------------------------CCCHHHe
Confidence 3333333322222222 456799999999999999999999988887 7887754
Q ss_pred hhhhhHHHHHHHHHHHHhhhhcCCCcccccccCccccchHHHHHHHHHhhcCcCCCCCEEEEEEeccccceeeEEEEE
Q 012253 297 YQSRDLEKASQQVAKQLYDLKVQPSTLIPKQVGNMYTASLYAAFASLLHEKHSSLEGKRVIMFSYGSGLTATMFSLQL 374 (467)
Q Consensus 297 ~~~~~~~k~~~~~~~~~~~~~~~~s~~~~~~~GN~~taS~~l~L~~~l~~~~~~~~G~~ill~syGsG~~~~~~~~~~ 374 (467)
. .+ .+++|||+|||+|++|++++++ +.+++||+|+|++||+|+++++.+++|
T Consensus 328 ~---------~~----------------l~~~GNt~sAsi~~~L~~~~~~-g~~~~Gd~vll~~~G~G~t~~~~ll~~ 379 (379)
T PLN02326 328 I---------SN----------------LANYGNTSAASIPLALDEAVRS-GKVKKGDVIATAGFGAGLTWGSAIVRW 379 (379)
T ss_pred e---------ec----------------HhhcCcHHHHHHHHHHHHHHHc-CCCCCCCEEEEEEEChhheeeEEEEEC
Confidence 2 11 2799999999999999999998 788999999999999999999999876
|
|
| >TIGR00747 fabH 3-oxoacyl-(acyl-carrier-protein) synthase III | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-42 Score=349.05 Aligned_cols=304 Identities=20% Similarity=0.235 Sum_probs=240.9
Q ss_pred ceeEEeEEEEecCCceeehhHHhhhhCCCcCeeE--EeccceEeeccCCCCCHHHHHHHHHHHHHHHcCCCcCCcCEEEE
Q 012253 7 KNVGILALDIYFPPTCVLQEALEVHDGVSKGKYT--VGLGQDCMAFCSEVEDVISMSLTVVTSLLEKYKIDPTQIGRLEV 84 (467)
Q Consensus 7 ~~vgI~ai~~y~P~~~v~~~el~~~~g~~~~k~~--~Gig~r~~av~~~~Ed~~~ma~~Aa~~aL~~agi~~~~Id~Li~ 84 (467)
|.++|.++++|+|+++++++++++..+.+..++. .|+.+|+ ++.+++++.+|+.+|++++|+++|++|++||.|++
T Consensus 1 ~~~~I~~i~~~~P~~~~~~~~~~~~~~~~~~~i~~~~gi~~r~--~~~~~~~~~~la~~A~~~al~~agl~~~~Id~~i~ 78 (318)
T TIGR00747 1 MYAGILGTGSYLPEKVLTNADLEKMVDTSDEWIVTRTGIKERR--IAADDETSSTMGFEAAKRAIENAGISKDDIDLIIV 78 (318)
T ss_pred CCCEEEEEEEECCCceecHHHHHHhcCCchHHeecccCceEEE--ECCCCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEE
Confidence 4699999999999999999999999887666553 4665555 66789999999999999999999999999999999
Q ss_pred EeccCCCCCCcHHHHHHHHhcccCCCCeeEEeeCCcChHHHHHHHHHHHHHHhCCCCCCEEEEEEeeccc-ccCCC---C
Q 012253 85 GSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDSAV-YAEGP---A 160 (467)
Q Consensus 85 ~Tes~~~~~ps~a~~v~~~Lgl~G~~~~~~~di~~aC~gg~~AL~~A~~~l~a~~~~~~~aLVV~sD~~~-y~~~~---~ 160 (467)
+++++.+..|+.+.+|++.||+ +++.++++.++|++++.||+.|.++|++|.. +++|||++|... ..++. .
T Consensus 79 ~~~~~~~~~~~~a~~l~~~lGl---~~~~~~~v~~~C~s~~~al~~A~~~i~~g~~--~~~Lvv~~e~~~~~~~~~~~~~ 153 (318)
T TIGR00747 79 ATTTPDHAFPSAACMVQAYLGI---KGIPAFDLSAACAGFIYALSVAKQYIESGKY--KTVLVVGAEKLSSTLDWTDRGT 153 (318)
T ss_pred ECCCCCCCCChHHHHHHHHhCC---CCCcEeehhhhhHHHHHHHHHHHHHHHcCCC--CEEEEEEehhhcCcCCcCCCCe
Confidence 9999888789999999999998 5688999999999999999999999999965 999999999872 22222 2
Q ss_pred CCccccceeEEEecCCCC-ceeecccccccccCccc-ccccC------CCCCCceecCcchHHHHHHHHHHHHHHHHHHH
Q 012253 161 RPTGGAAAVAMLIGPDAP-IAFESKLRGSHMSHAYD-FYKPN------LASEYPVVDGKLSQTCYLMALDSCYKYFCQKF 232 (467)
Q Consensus 161 ~~t~GdGAvA~Ll~~~~~-~~~~~~~~~~~~~~~~d-f~~p~------~~~~~~~vdG~~s~~~y~~a~~~~~~~~~~~~ 232 (467)
..++||||+|+||++++. ..+..-...+... ..| ++.|. ....+..+++......+.+.+.++++.+++
T Consensus 154 ~~~~GDGAaA~lL~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-- 230 (318)
T TIGR00747 154 CVLFGDGAGAVVLGESEDPGGIISTHLGADGT-QGEALYLPAGGRPTSGPSPFITMEGNEVFKHAVRKMGDVVEETLE-- 230 (318)
T ss_pred EEEEecceeEEEEeecCCCCcEEEEEEEEcCC-CcceEEECCCCcCCCCCCCceEECCHHHHHHHHHHHHHHHHHHHH--
Confidence 356899999999998763 2111101111111 112 22222 122345566766655566655555555554
Q ss_pred HhhhcCCCCccccceeccCCchHHHHHHHHHhhhhhhhccccCchhhHHhhhcCCCCCCCcchhhhhhhHHHHHHHHHHH
Q 012253 233 EKLEGRQFSMLDVDYFVFHSPYNKLVQKSFARLFFNDFLRNASSVDEIAKEKLAPYSTLSDVESYQSRDLEKASQQVAKQ 312 (467)
Q Consensus 233 ~~~~~~~~~~~d~d~~i~H~p~~k~~~k~~~~l~~~~~~~~~~~~~~~~~~~l~~~~g~~~e~~~~~~~~~k~~~~~~~~ 312 (467)
++++.++|||+|++|+++.++++++.+.| |+|+++.+ .++
T Consensus 231 ----~~g~~~~di~~~~~h~~~~~~~~~~~~~l------------------------gi~~~k~~---------~~~--- 270 (318)
T TIGR00747 231 ----ANGLDPEDIDWFVPHQANLRIIEALAKRL------------------------ELDMSQVV---------KTV--- 270 (318)
T ss_pred ----HcCCCHHHCCEEEECCCCHHHHHHHHHHc------------------------CCCHHHee---------ehH---
Confidence 44789999999999999999999998887 78877543 122
Q ss_pred HhhhhcCCCcccccccCccccchHHHHHHHHHhhcCcCCCCCEEEEEEeccccceeeEEEEE
Q 012253 313 LYDLKVQPSTLIPKQVGNMYTASLYAAFASLLHEKHSSLEGKRVIMFSYGSGLTATMFSLQL 374 (467)
Q Consensus 313 ~~~~~~~~s~~~~~~~GN~~taS~~l~L~~~l~~~~~~~~G~~ill~syGsG~~~~~~~~~~ 374 (467)
+++||+++||++++|++++++ +.+.+||+|++++||+|+++++.+++|
T Consensus 271 -------------~~~Gn~~sas~~~~L~~~~~~-~~~~~Gd~vll~~~G~G~t~~~~~l~~ 318 (318)
T TIGR00747 271 -------------HKYGNTSAASIPLALDELLRT-GRIKPGDLLLLVAFGGGLTWGAALVRF 318 (318)
T ss_pred -------------hhhCCHHHHHHHHHHHHHHHc-CCCCCCCEEEEEEEehhheeeEEEEEC
Confidence 689999999999999999998 788999999999999999999999986
|
Active site residues include Cys112, His244 and Asn274 of E. coli FabH. Cys-112 is the site of acyl group attachment. |
| >PRK06840 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-42 Score=351.19 Aligned_cols=307 Identities=16% Similarity=0.116 Sum_probs=232.4
Q ss_pred CceeEEeEEEEecCCceeehhHHhhhhCCCcCeeE--EeccceEeeccCCCCCHHHHHHHHHHHHHHHcCCCcCCcCEEE
Q 012253 6 PKNVGILALDIYFPPTCVLQEALEVHDGVSKGKYT--VGLGQDCMAFCSEVEDVISMSLTVVTSLLEKYKIDPTQIGRLE 83 (467)
Q Consensus 6 ~~~vgI~ai~~y~P~~~v~~~el~~~~g~~~~k~~--~Gig~r~~av~~~~Ed~~~ma~~Aa~~aL~~agi~~~~Id~Li 83 (467)
||+|+|.++++|+|+++|++++|++..|.+.+++. +|+.+|+ ++.++|+..+|+++|++++|+++|++|++||+||
T Consensus 2 ~~~v~I~~~~~~lP~~~v~~~~l~~~~g~~~~~~~~~~Gi~~r~--~~~~~~~~~~la~~Aa~~aL~~ag~~~~dId~li 79 (339)
T PRK06840 2 EMNVGIVGTGVYLPKDVMTAEEIAEKTGIPEEVVIEKFGIYEKP--VPGPEDHTSDMAIAAAKPALKQAGVDPAAIDVVI 79 (339)
T ss_pred CCceEEEEEEEeCCCcccCHHHHHHHhCCCHHHHhhhcCcceEe--eCCCCCCHHHHHHHHHHHHHHHcCCCHHHCCEEE
Confidence 57899999999999999999999999998877774 4555554 6688899999999999999999999999999999
Q ss_pred EEec-cCCCCCCcHHHHHHHHhcccCCCCeeEEeeCCcChHHHHHHHHHHHHHHh-CCCCCCEEEEEEeecc-cccCC--
Q 012253 84 VGSE-TVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAALFNCVNWVES-ASWDGRYGLVVCTDSA-VYAEG-- 158 (467)
Q Consensus 84 ~~Te-s~~~~~ps~a~~v~~~Lgl~G~~~~~~~di~~aC~gg~~AL~~A~~~l~a-~~~~~~~aLVV~sD~~-~y~~~-- 158 (467)
++++ ++++..|+.+++|++.||+ +++.++|+.++|+|++.||.+|.++|++ +.. +++|||++|.. .+.+.
T Consensus 80 ~~~~~~~~~~~p~~a~~l~~~lGl---~~~~~~~v~~~C~~~~~al~~A~~~l~~~g~~--~~~Lvv~~~~~s~~~~~~~ 154 (339)
T PRK06840 80 YIGSEHKDYPVWSSAPKIQHEIGA---KNAWAFDIMAVCASFPIALKVAKDLLYSDPSI--ENVLLVGGYRNSDLVDYDN 154 (339)
T ss_pred EeccCCCCCCCCchHHHHHHHhCC---CCcccccccccchHHHHHHHHHHHHHhcCCCc--cEEEEEeecccccccCcCC
Confidence 8765 4556689999999999998 5788999999999999999999999999 654 89999999986 32222
Q ss_pred -CCC--CccccceeEEEecCCCC-ceeecccccccccCcccccccCCCCC-------------CceecCcchHHHHHH--
Q 012253 159 -PAR--PTGGAAAVAMLIGPDAP-IAFESKLRGSHMSHAYDFYKPNLASE-------------YPVVDGKLSQTCYLM-- 219 (467)
Q Consensus 159 -~~~--~t~GdGAvA~Ll~~~~~-~~~~~~~~~~~~~~~~df~~p~~~~~-------------~~~vdG~~s~~~y~~-- 219 (467)
... .+|||||+|+||++++. ..+......+.......+..|..+.. +..+.+...+...+.
T Consensus 155 ~~~~~~~~~GDgAaA~ll~~~~~~~~il~~~~~t~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (339)
T PRK06840 155 PRTRFMFNFAAGGSAALLKKDAGKNRILGSAIITDGSFSEDVRVPAGGTKQPASPETVENRQHYLDVIDPESMKERLDEV 234 (339)
T ss_pred CCeeeeccCCCceeEEEEEecCCCCceEEEEEEEcCCccceEEecCCCcCCCCcccccccccceEEEcCcHHHHHHhHhh
Confidence 122 35799999999998764 22211011111111112222322211 111223322221111
Q ss_pred ---HHHHHHHHHHHHHHhhhcCCCCccccceeccCCchHHHHHHHHHhhhhhhhccccCchhhHHhhhcCCCCCCCcchh
Q 012253 220 ---ALDSCYKYFCQKFEKLEGRQFSMLDVDYFVFHSPYNKLVQKSFARLFFNDFLRNASSVDEIAKEKLAPYSTLSDVES 296 (467)
Q Consensus 220 ---a~~~~~~~~~~~~~~~~~~~~~~~d~d~~i~H~p~~k~~~k~~~~l~~~~~~~~~~~~~~~~~~~l~~~~g~~~e~~ 296 (467)
.+..+.+.++ .+++++++|||++++||++.++++...++| ++++++.
T Consensus 235 ~~~~~~~~i~~~L------~~~gl~~~did~~~~h~~~~~~~~~~~~~L------------------------gl~~~~~ 284 (339)
T PRK06840 235 SIPNFLKVIREAL------RKSGYTPKDIDYLAILHMKRSAHIALLEGL------------------------GLTEEQA 284 (339)
T ss_pred HHHHHHHHHHHHH------HHcCCCHHHCCEEEECCcCHHHHHHHHHHc------------------------CCCHHHe
Confidence 1223333333 456899999999999999999999888877 7777653
Q ss_pred hhhhhHHHHHHHHHHHHhhhhcCCCcccccccCccccchHHHHHHHHHhhcCcCCCCCEEEEEEeccccceeeEEEEEec
Q 012253 297 YQSRDLEKASQQVAKQLYDLKVQPSTLIPKQVGNMYTASLYAAFASLLHEKHSSLEGKRVIMFSYGSGLTATMFSLQLQE 376 (467)
Q Consensus 297 ~~~~~~~k~~~~~~~~~~~~~~~~s~~~~~~~GN~~taS~~l~L~~~l~~~~~~~~G~~ill~syGsG~~~~~~~~~~~~ 376 (467)
+ +.+++|||+|+|++++|.+++++ +++++|++|+|+++|+|+++++.+++|.+
T Consensus 285 ~--------------------------~~~~~Gn~~sas~~~~L~~~~~~-~~~~~Gd~ill~~~G~G~s~~~~~l~~~~ 337 (339)
T PRK06840 285 I--------------------------YLDEYGHLGQLDQILSLHLALEQ-GKLKDGDLVVLVSAGTGYTWAATVIRWGP 337 (339)
T ss_pred E--------------------------eHHhccchhhhhHHHHHHHHHHc-CCCCCCCEEEEEEEehhhheeEEEEEecC
Confidence 1 23799999999999999999987 77889999999999999999999999975
|
|
| >cd00830 KAS_III Ketoacyl-acyl carrier protein synthase III (KASIII) initiates the elongation in type II fatty acid synthase systems | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-42 Score=349.02 Aligned_cols=303 Identities=19% Similarity=0.210 Sum_probs=239.0
Q ss_pred eeEEeEEEEecCCceeehhHHhhhhCCCcCeeEEeccceEeeccCCCCCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEec
Q 012253 8 NVGILALDIYFPPTCVLQEALEVHDGVSKGKYTVGLGQDCMAFCSEVEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSE 87 (467)
Q Consensus 8 ~vgI~ai~~y~P~~~v~~~el~~~~g~~~~k~~~Gig~r~~av~~~~Ed~~~ma~~Aa~~aL~~agi~~~~Id~Li~~Te 87 (467)
+++|.+++.|+|+++++++|+.+..+.+.+++....|.+++.++.+++++.+|+++|++++|+++|+++++||.||++|+
T Consensus 1 ~~~I~~i~~~lP~~~~~~~~~~~~~~~~~~~~~~~~Gi~~r~~~~~~~~~~~la~~A~~~al~~ag~~~~~Id~li~~~~ 80 (320)
T cd00830 1 NARILGIGSYLPERVVTNDELEKRLDTSDEWIRTRTGIRERRIADPGETTSDLAVEAAKKALEDAGIDADDIDLIIVATS 80 (320)
T ss_pred CCEEEEEEEECCCcEEcHHHHHHHcCCCHHHhhhccCceEEeeCCCCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEEcC
Confidence 58999999999999999999999998887777433444444466788999999999999999999999999999999999
Q ss_pred cCCCCCCcHHHHHHHHhcccCCCCeeEEeeCCcChHHHHHHHHHHHHHHhCCCCCCEEEEEEeecc-cccCC---CCCCc
Q 012253 88 TVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDSA-VYAEG---PARPT 163 (467)
Q Consensus 88 s~~~~~ps~a~~v~~~Lgl~G~~~~~~~di~~aC~gg~~AL~~A~~~l~a~~~~~~~aLVV~sD~~-~y~~~---~~~~t 163 (467)
++.+..|+.+.+|++.||+ +++.++++.++|++++.||..|.++|++|.. ++||||++|.. ...+. ....+
T Consensus 81 ~~~~~~~~~~~~l~~~lg~---~~~~~~~v~~~C~s~~~al~~A~~~i~~g~~--~~vLvv~~e~~s~~~~~~~~~~~~~ 155 (320)
T cd00830 81 TPDYLFPATACLVQARLGA---KNAAAFDINAACSGFLYGLSTAAGLIRSGGA--KNVLVVGAETLSRILDWTDRSTAVL 155 (320)
T ss_pred CCCCCCCcHHHHHHHHhCC---CCCcEeeccccchHHHHHHHHHHHHHHcCCC--CEEEEEEehhhccccCcccCCceEE
Confidence 9988789999999999998 4789999999999999999999999999954 99999999997 22222 23567
Q ss_pred cccceeEEEecCCCC-ceeeccccccccc--Ccccc-----cccC----CCCCCceecCcchHHHHHHHHHHHHHHHHHH
Q 012253 164 GGAAAVAMLIGPDAP-IAFESKLRGSHMS--HAYDF-----YKPN----LASEYPVVDGKLSQTCYLMALDSCYKYFCQK 231 (467)
Q Consensus 164 ~GdGAvA~Ll~~~~~-~~~~~~~~~~~~~--~~~df-----~~p~----~~~~~~~vdG~~s~~~y~~a~~~~~~~~~~~ 231 (467)
+||||+|+||++.+. ..+......+... +...+ .+|. ....+..++++.....+.+.+..+++.++++
T Consensus 156 ~GDgAaA~ll~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~ 235 (320)
T cd00830 156 FGDGAGAVVLEATEEDPGILDSVLGSDGSGADLLTIPAGGSRSPFEDAEGGDPYLVMDGREVFKFAVRLMPESIEEALEK 235 (320)
T ss_pred EeccceEEEEEecCCCCcEEEEEEEEcCCCCCeEEeCCCCcCCccccccccCccEEEcChHHHHHHHHhhHHHHHHHHHH
Confidence 899999999998764 2211111111111 11111 1110 0112345677777666666666666666554
Q ss_pred HHhhhcCCCCccccceeccCCchHHHHHHHHHhhhhhhhccccCchhhHHhhhcCCCCCCCcchhhhhhhHHHHHHHHHH
Q 012253 232 FEKLEGRQFSMLDVDYFVFHSPYNKLVQKSFARLFFNDFLRNASSVDEIAKEKLAPYSTLSDVESYQSRDLEKASQQVAK 311 (467)
Q Consensus 232 ~~~~~~~~~~~~d~d~~i~H~p~~k~~~k~~~~l~~~~~~~~~~~~~~~~~~~l~~~~g~~~e~~~~~~~~~k~~~~~~~ 311 (467)
+++.++|||+|++||++.++++++.++| |+++++.+ .++
T Consensus 236 ------~g~~~~di~~~~~h~~~~~~~~~~~~~l------------------------gl~~~~~~---------~~~-- 274 (320)
T cd00830 236 ------AGLTPDDIDWFVPHQANLRIIEAVAKRL------------------------GLPEEKVV---------VNL-- 274 (320)
T ss_pred ------cCCCHHHCCEEEECCCCHHHHHHHHHHh------------------------CCCHHHhh---------hhH--
Confidence 4699999999999999999999988877 77776532 222
Q ss_pred HHhhhhcCCCcccccccCccccchHHHHHHHHHhhcCcCCCCCEEEEEEeccccceeeEE
Q 012253 312 QLYDLKVQPSTLIPKQVGNMYTASLYAAFASLLHEKHSSLEGKRVIMFSYGSGLTATMFS 371 (467)
Q Consensus 312 ~~~~~~~~~s~~~~~~~GN~~taS~~l~L~~~l~~~~~~~~G~~ill~syGsG~~~~~~~ 371 (467)
+++||++|+|+|++|.+++++ +++++|++|+|+++|+|+++++.+
T Consensus 275 --------------~~~Gn~~sas~~~~L~~~~~~-~~~~~G~~vll~~~G~G~~~~~~l 319 (320)
T cd00830 275 --------------DRYGNTSAASIPLALDEAIEE-GKLKKGDLVLLLGFGAGLTWGAAL 319 (320)
T ss_pred --------------HhhCcHHHHHHHHHHHHHHHc-CCCCCCCEEEEEEEchHHhhHHhh
Confidence 799999999999999999998 788899999999999999998764
|
It is found in bacteria and plants. Elongation of fatty acids in the type II systems occurs by Claisen condensation of malonyl-acyl carrier protein (ACP) with acyl-ACP. KASIII initiates this process by specifically using acetyl-CoA over acyl-CoA. |
| >cd00831 CHS_like Chalcone and stilbene synthases; plant-specific polyketide synthases (PKS) and related enzymes, also called type III PKSs | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-42 Score=351.96 Aligned_cols=305 Identities=19% Similarity=0.226 Sum_probs=229.8
Q ss_pred eEEeEEEEecCCceeehhHHhhhhCC--Cc----------Cee--EEeccceEeeccC-CC-------------------
Q 012253 9 VGILALDIYFPPTCVLQEALEVHDGV--SK----------GKY--TVGLGQDCMAFCS-EV------------------- 54 (467)
Q Consensus 9 vgI~ai~~y~P~~~v~~~el~~~~g~--~~----------~k~--~~Gig~r~~av~~-~~------------------- 54 (467)
+.|.+++.|+|++.++|+++.+..+. +. .++ .+||.+|++..+. ++
T Consensus 2 ~~I~~~~~~~P~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gI~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (361)
T cd00831 2 ATILAIGTAVPPHRVPQSELVDFYRRLFSSDHLPELKEKLKRLCAKTGIETRYLVLPGGEETYAPRPEMSPSLDERNDIA 81 (361)
T ss_pred cEEEEEEEeCCCCcCCHHHhhHHHHhcCChhhhHHHHHHHHHHHhhcceeEEEEEecCchhhcCCccccCCCcCcchhhH
Confidence 68999999999999999999998652 11 233 3799999987541 11
Q ss_pred -CCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHhcccCCCCeeEEeeC-CcChHHHHHHHHHH
Q 012253 55 -EDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDST-NACYGGTAALFNCV 132 (467)
Q Consensus 55 -Ed~~~ma~~Aa~~aL~~agi~~~~Id~Li~~Tes~~~~~ps~a~~v~~~Lgl~G~~~~~~~di~-~aC~gg~~AL~~A~ 132 (467)
|++.+||++|+++||+++|++|++||+||++|+++ +..|+++.+|+++||+ .+++.+||++ +||+|++.||++|.
T Consensus 82 ~~~~~~la~~Aa~~aL~~a~~~~~~Id~li~~s~~~-~~~P~~a~~i~~~lgl--~~~~~~~dv~~~~C~~~~~al~~A~ 158 (361)
T cd00831 82 LEEARELAEEAARGALDEAGLRPSDIDHLVVNTSTG-NPTPSLDAMLINRLGL--RPDVKRYNLGGMGCSAGAIALDLAK 158 (361)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHCCEEEEECCCC-CCCCCHHHHHHHHhCC--CcccchhccccccchhHHHHHHHHH
Confidence 36899999999999999999999999999999987 5699999999999998 5679999998 89999999999999
Q ss_pred HHHHhCCCCCCEEEEEEeecc-c-ccCCC------CCCccccceeEEEecCCCCcee--e--cccccccccCcccc----
Q 012253 133 NWVESASWDGRYGLVVCTDSA-V-YAEGP------ARPTGGAAAVAMLIGPDAPIAF--E--SKLRGSHMSHAYDF---- 196 (467)
Q Consensus 133 ~~l~a~~~~~~~aLVV~sD~~-~-y~~~~------~~~t~GdGAvA~Ll~~~~~~~~--~--~~~~~~~~~~~~df---- 196 (467)
++++++. .++||||++|.. . +.... ...+|||||+|+||++++.... . ....++++....+.
T Consensus 159 ~~~~~~~--~~~aLvv~~e~~s~~~~~~d~~~~~~~~~lfGDgaaA~ll~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 236 (361)
T cd00831 159 DLLEANP--GARVLVVSTELCSLWYRGPDHRSMLVGNALFGDGAAAVLLSNDPRDRRRERPLFELVRAASTLLPDSEDAM 236 (361)
T ss_pred HHHHHCC--CCEEEEEEeecccceeCCCCcHHHhhhhhhccCCceEEEEEcCCCcccccccceeeecccceeeecCCCce
Confidence 9999994 499999999997 2 22221 2467999999999998764210 0 01122222111111
Q ss_pred -cccCCCCCCceecCcchHHHHHHHHHHHHHHHHHHHHhhhcC--CCCccccceeccCCchHHHHHHHHHhhhhhhhccc
Q 012253 197 -YKPNLASEYPVVDGKLSQTCYLMALDSCYKYFCQKFEKLEGR--QFSMLDVDYFVFHSPYNKLVQKSFARLFFNDFLRN 273 (467)
Q Consensus 197 -~~p~~~~~~~~vdG~~s~~~y~~a~~~~~~~~~~~~~~~~~~--~~~~~d~d~~i~H~p~~k~~~k~~~~l~~~~~~~~ 273 (467)
|++.. ..+..+.++.....+...+..+++.++ +++ +++.+|||+|++||++.++++.+.++|
T Consensus 237 ~~~~~~-~~~~~~~~~~v~~~~~~~~~~~i~~~L------~~~~~g~~~~did~~~~H~~~~~i~~~v~~~l-------- 301 (361)
T cd00831 237 GWHLGE-EGLTFVLSRDVPRLVEKNLERVLRKLL------ARLGIGLFKLAFDHWCVHPGGRAVLDAVEKAL-------- 301 (361)
T ss_pred EEEEEc-ceEEEEeChhHHHHHHHHHHHHHHHHh------ccccCCCccccceEEEECCCChHHHHHHHHHc--------
Confidence 11110 112223333333334444444444443 445 788999999999999999999988877
Q ss_pred cCchhhHHhhhcCCCCCCCcchhhhhhhHHHHHHHHHHHHhhhhcCCCcccccccCccccchHHHHHHHHHhhcCcCCCC
Q 012253 274 ASSVDEIAKEKLAPYSTLSDVESYQSRDLEKASQQVAKQLYDLKVQPSTLIPKQVGNMYTASLYAAFASLLHEKHSSLEG 353 (467)
Q Consensus 274 ~~~~~~~~~~~l~~~~g~~~e~~~~~~~~~k~~~~~~~~~~~~~~~~s~~~~~~~GN~~taS~~l~L~~~l~~~~~~~~G 353 (467)
|+++++. .+|+.+.+++|||+|||+|++|.+++++ +++++|
T Consensus 302 ----------------gl~~~~~----------------------~~s~~~l~~~GN~~sasi~~~L~~~~~~-g~~~~G 342 (361)
T cd00831 302 ----------------GLSPEDL----------------------EASRMVLRRYGNMSSSSVLYVLAYMEAK-GRVKRG 342 (361)
T ss_pred ----------------CCCHHHH----------------------HHHHHHHHHhCCchhccHHHHHHHHHHh-CCCCCC
Confidence 7777643 1222334899999999999999999998 788899
Q ss_pred CEEEEEEeccccceeeEEE
Q 012253 354 KRVIMFSYGSGLTATMFSL 372 (467)
Q Consensus 354 ~~ill~syGsG~~~~~~~~ 372 (467)
++|+|++||+|++++++++
T Consensus 343 d~vll~~~G~G~s~~~~l~ 361 (361)
T cd00831 343 DRGLLIAFGPGFTCESAVW 361 (361)
T ss_pred CEEEEEEEcCCceeeeeeC
Confidence 9999999999999998763
|
PKS generate an array of different products, dependent on the nature of the starter molecule. They share a common chemical strategy, after the starter molecule is loaded onto the active site cysteine, a carboxylative condensation reation extends the polyketide chain. Plant-specific PKS are dimeric iterative PKSs, using coenzyme A esters to deliver substrate to the active site, but they differ in the choice of starter molecule and the number of condensation reactions. |
| >PLN03169 chalcone synthase family protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-42 Score=353.58 Aligned_cols=311 Identities=16% Similarity=0.163 Sum_probs=230.9
Q ss_pred CCceeEEeEEEEecCCceeehhHHhhhh----CCCcCe-------e--EEeccceEeeccCC------------------
Q 012253 5 HPKNVGILALDIYFPPTCVLQEALEVHD----GVSKGK-------Y--TVGLGQDCMAFCSE------------------ 53 (467)
Q Consensus 5 ~~~~vgI~ai~~y~P~~~v~~~el~~~~----g~~~~k-------~--~~Gig~r~~av~~~------------------ 53 (467)
+|..+.|.+|+.|+|++.++|+|+.+.. +.+..+ + ++||.+|+++...+
T Consensus 18 ~~~~~~I~gigt~~P~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~tGI~~R~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (391)
T PLN03169 18 NPGKATILALGKAFPSQLVPQEYLVDGYFRDTKCDDPALKEKLERLCKTTTVKTRYVVMSKEILDKYPELATEGTPTIKQ 97 (391)
T ss_pred CCCCeEEEEEEeeCCCeecCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCcceeeEeccccchhhCccccccCCCCHHH
Confidence 3567999999999999999999998852 212222 2 37999999764221
Q ss_pred -----CCCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHhcccCCCCe-eEEeeCCcChHHHHH
Q 012253 54 -----VEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDI-EGVDSTNACYGGTAA 127 (467)
Q Consensus 54 -----~Ed~~~ma~~Aa~~aL~~agi~~~~Id~Li~~Tes~~~~~ps~a~~v~~~Lgl~G~~~~-~~~di~~aC~gg~~A 127 (467)
+|++.+||++|+++||+++|++|+|||+||++|+| ++..|+++.+|+++||+ ++.+ +++|+..||+|+++|
T Consensus 98 r~~~~~e~~~~La~~Aa~~aL~~ag~~~~dId~lI~~t~t-~~~~P~~a~~l~~~LGl--~~~~~~~~d~~~gC~g~~~a 174 (391)
T PLN03169 98 RLDIANEAVTQMAVEASLACIKEWGRPVSDITHLVYVSSS-EARLPGGDLYLAKQLGL--SPDVQRVMLYFLGCSGGVAG 174 (391)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHCCEEEEECcC-CCCCCcHHHHHHHHhCc--CCcceeeecccChhHHHHHH
Confidence 56789999999999999999999999999999986 66799999999999998 5566 589999999999999
Q ss_pred HHHHHHHHHhCCCCCCEEEEEEeeccc--ccC-----C---CCCCccccceeEEEecCCCCc-----eeeccccccc---
Q 012253 128 LFNCVNWVESASWDGRYGLVVCTDSAV--YAE-----G---PARPTGGAAAVAMLIGPDAPI-----AFESKLRGSH--- 189 (467)
Q Consensus 128 L~~A~~~l~a~~~~~~~aLVV~sD~~~--y~~-----~---~~~~t~GdGAvA~Ll~~~~~~-----~~~~~~~~~~--- 189 (467)
|.+|.+|++++ +.++||||++|.+. +.. . ....+|||||+|+||++++.. .++....++.
T Consensus 175 L~~A~~~~~~~--~~~~vLvv~~e~~s~~~~~~~~~~~~d~~~~~lFGDGAaA~vl~~~~~~~~~~~~~~l~~~~~~~ip 252 (391)
T PLN03169 175 LRVAKDIAENN--PGSRVLLTTSETTILGFRPPSPDRPYDLVGAALFGDGAAAVIIGADPIPVSESPFFELHTAIQQFLP 252 (391)
T ss_pred HHHHHHHHHhC--CCCeEEEEEEEcChhhccCCCccchhhhhhhhhccCceEEEEEecCCCcccCCcceEEEeeeeeEcC
Confidence 99999999999 45999999999972 221 1 124679999999999986421 1111001110
Q ss_pred -ccCcccccccCCCCCCceecCcchHHHHHHHHHHHHHHHHHHHHhhhcCCCCccccc--eeccCCchHHHHHHHHHhhh
Q 012253 190 -MSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKYFCQKFEKLEGRQFSMLDVD--YFVFHSPYNKLVQKSFARLF 266 (467)
Q Consensus 190 -~~~~~df~~p~~~~~~~~vdG~~s~~~y~~a~~~~~~~~~~~~~~~~~~~~~~~d~d--~~i~H~p~~k~~~k~~~~l~ 266 (467)
+.+.+++... ...+..++|+.........+..+.+.++ ++++++.+|+| +|++||++.+|++.+.++|
T Consensus 253 ~~~~~~~~~~~--~~g~~~~~g~~v~~~~~~~~~~~i~~~L------~~~gl~~~did~~~~v~Hq~n~~il~~v~~~L- 323 (391)
T PLN03169 253 GTEKTIDGRLT--EEGINFKLGRELPQKIEDNIEGFCKKLM------KKAGLVEKDYNDLFWAVHPGGPAILNRLEKKL- 323 (391)
T ss_pred CCccccCceec--CCceEEEECcHHHHHHHHHHHHHHHHHH------HHcCCCCCCCCcceEEecCCCHHHHHHHHHHc-
Confidence 0000111000 0112335566654444444444444444 44578888899 9999999999999999888
Q ss_pred hhhhccccCchhhHHhhhcCCCCCCCcchhhhhhhHHHHHHHHHHHHhhhhcCCCcccccccCccccchHHHHHHHHHhh
Q 012253 267 FNDFLRNASSVDEIAKEKLAPYSTLSDVESYQSRDLEKASQQVAKQLYDLKVQPSTLIPKQVGNMYTASLYAAFASLLHE 346 (467)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~l~~~~g~~~e~~~~~~~~~k~~~~~~~~~~~~~~~~s~~~~~~~GN~~taS~~l~L~~~l~~ 346 (467)
|+++++.. .|+.+.+++|||+|||+|++|..++++
T Consensus 324 -----------------------gl~~ek~~----------------------~s~~~l~~~GNtsSasip~~L~~~~~~ 358 (391)
T PLN03169 324 -----------------------KLAPEKLE----------------------CSRRALMDYGNVSSNTIVYVLEYMREE 358 (391)
T ss_pred -----------------------CCCHHHHH----------------------HHHHHHHHhCCchHhHHHHHHHHHHHh
Confidence 78877531 122234899999999999999999876
Q ss_pred cCcCC---CCCEEEEEEeccccceeeEEEEEe
Q 012253 347 KHSSL---EGKRVIMFSYGSGLTATMFSLQLQ 375 (467)
Q Consensus 347 ~~~~~---~G~~ill~syGsG~~~~~~~~~~~ 375 (467)
++++ +|++++|++||+|+++++.+++|.
T Consensus 359 -~~~~~~~~gd~~ll~afG~G~s~~~~ll~~~ 389 (391)
T PLN03169 359 -LKKKGEEDEEWGLILAFGPGITFEGILARNL 389 (391)
T ss_pred -hcccCCCCCcEEEEEEEcccHhHHHHHHhhh
Confidence 5543 689999999999999999998863
|
|
| >PRK09352 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-41 Score=337.95 Aligned_cols=306 Identities=20% Similarity=0.213 Sum_probs=241.8
Q ss_pred ceeEEeEEEEecCCceeehhHHhhhhCCCcCee--EEeccceEeeccCCCCCHHHHHHHHHHHHHHHcCCCcCCcCEEEE
Q 012253 7 KNVGILALDIYFPPTCVLQEALEVHDGVSKGKY--TVGLGQDCMAFCSEVEDVISMSLTVVTSLLEKYKIDPTQIGRLEV 84 (467)
Q Consensus 7 ~~vgI~ai~~y~P~~~v~~~el~~~~g~~~~k~--~~Gig~r~~av~~~~Ed~~~ma~~Aa~~aL~~agi~~~~Id~Li~ 84 (467)
+.|+|.++++|+|+++++++++.+..+.+..++ ++|+..|+ ++.++++..+|+.+|++++|+++|+++++||.|++
T Consensus 2 ~~v~I~ai~~~lP~~~~~~~~~~~~~~~~~~~i~~~~gi~~r~--~~~~~~~~~~la~~A~~~al~~agl~~~~id~vi~ 79 (319)
T PRK09352 2 MYAKILGTGSYLPERVVTNDDLEKMVDTSDEWIVTRTGIKERR--IAAPDETTSDLATEAAKKALEAAGIDPEDIDLIIV 79 (319)
T ss_pred CceEEEEEEEECCCeEEcHHHHHHHcCCCHHHhhhhcCeEEEE--eCCCCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEE
Confidence 579999999999999999999999988766555 35676665 55788999999999999999999999999999999
Q ss_pred EeccCCCCCCcHHHHHHHHhcccCCCCeeEEeeCCcChHHHHHHHHHHHHHHhCCCCCCEEEEEEeeccc-ccCCCC---
Q 012253 85 GSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDSAV-YAEGPA--- 160 (467)
Q Consensus 85 ~Tes~~~~~ps~a~~v~~~Lgl~G~~~~~~~di~~aC~gg~~AL~~A~~~l~a~~~~~~~aLVV~sD~~~-y~~~~~--- 160 (467)
+|+++....|+.+.+|+..||+ .++.++++.++|++++.||..|..+|++|.. ++||||++|.+. ..+...
T Consensus 80 ~~~~~~~~~~~~~~~i~~~lG~---~~~~~~~v~~~Casg~~al~~A~~~i~~g~~--~~vLvv~~e~~s~~~~~~~~~~ 154 (319)
T PRK09352 80 ATTTPDYAFPSTACLVQARLGA---KNAAAFDLSAACSGFVYALSTADQFIRSGAY--KNVLVIGAEKLSRIVDWTDRST 154 (319)
T ss_pred EcCCCCCCCchHHHHHHHHhCC---CCCcEeeccccchhHHHHHHHHHHHHHcCCC--CEEEEEEehhhccccCcccCCc
Confidence 9999887789999999999997 6688999999999999999999999999955 999999999872 222222
Q ss_pred CCccccceeEEEecCCCCceeecccccccccCcccccccCCCC------CCceecCcchHHHHHHHHHHHHHHHHHHHHh
Q 012253 161 RPTGGAAAVAMLIGPDAPIAFESKLRGSHMSHAYDFYKPNLAS------EYPVVDGKLSQTCYLMALDSCYKYFCQKFEK 234 (467)
Q Consensus 161 ~~t~GdGAvA~Ll~~~~~~~~~~~~~~~~~~~~~df~~p~~~~------~~~~vdG~~s~~~y~~a~~~~~~~~~~~~~~ 234 (467)
...+||||+|+||++++.-.+..-...+.......+..|..+. .+..++|+.....+...+.++++.++++
T Consensus 155 ~~~~gDGaaA~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~--- 231 (319)
T PRK09352 155 CVLFGDGAGAVVLGASEEPGILSTHLGSDGSYGDLLYLPGGGSRGPASPGYLRMEGREVFKFAVRELAKVAREALEA--- 231 (319)
T ss_pred eEEEeccceEEEEEEcCCCCeEEEEEEEcCCCCCeEEeCCCCCCCCCCCCceEECCHHHHHHHHHHHHHHHHHHHHH---
Confidence 3478999999999987531111001111111111123343222 1345677766556666666666655544
Q ss_pred hhcCCCCccccceeccCCchHHHHHHHHHhhhhhhhccccCchhhHHhhhcCCCCCCCcchhhhhhhHHHHHHHHHHHHh
Q 012253 235 LEGRQFSMLDVDYFVFHSPYNKLVQKSFARLFFNDFLRNASSVDEIAKEKLAPYSTLSDVESYQSRDLEKASQQVAKQLY 314 (467)
Q Consensus 235 ~~~~~~~~~d~d~~i~H~p~~k~~~k~~~~l~~~~~~~~~~~~~~~~~~~l~~~~g~~~e~~~~~~~~~k~~~~~~~~~~ 314 (467)
++++++|||+|++|+++.++++...+.| ++|+++.. .++
T Consensus 232 ---~g~~~~di~~~~~h~~~~~~~~~~~~~l------------------------g~~~~~~~---------~~~----- 270 (319)
T PRK09352 232 ---AGLTPEDIDWLVPHQANLRIIDATAKKL------------------------GLPMEKVV---------VTV----- 270 (319)
T ss_pred ---cCCCHHHCCEEEECCCCHHHHHHHHHHh------------------------CCCHHHhh---------hhH-----
Confidence 4689999999999999999999988877 77776431 122
Q ss_pred hhhcCCCcccccccCccccchHHHHHHHHHhhcCcCCCCCEEEEEEeccccceeeEEEEEe
Q 012253 315 DLKVQPSTLIPKQVGNMYTASLYAAFASLLHEKHSSLEGKRVIMFSYGSGLTATMFSLQLQ 375 (467)
Q Consensus 315 ~~~~~~s~~~~~~~GN~~taS~~l~L~~~l~~~~~~~~G~~ill~syGsG~~~~~~~~~~~ 375 (467)
.++||++++|++++|++++++ +++++|++|+++|+|+|+++++++++|+
T Consensus 271 -----------~~~Gn~~~a~~~~~L~~~~~~-g~~~~Gd~vll~s~G~G~~~~~~ll~~~ 319 (319)
T PRK09352 271 -----------DKYGNTSAASIPLALDEAVRD-GRIKRGDLVLLEGFGGGLTWGAALVRWP 319 (319)
T ss_pred -----------HhhCCHHHHHHHHHHHHHHHc-CCCCCCCEEEEEEEchhheeEEEEEEeC
Confidence 689999999999999999998 7888999999999999999999999985
|
|
| >PRK06816 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-41 Score=345.64 Aligned_cols=315 Identities=18% Similarity=0.198 Sum_probs=232.3
Q ss_pred ceeEEeEEEEecCCceeehhHHhhhhCCCcC-------ee--EEeccceEeeccC---CCCCHHHHHHHHHHHHHHHcCC
Q 012253 7 KNVGILALDIYFPPTCVLQEALEVHDGVSKG-------KY--TVGLGQDCMAFCS---EVEDVISMSLTVVTSLLEKYKI 74 (467)
Q Consensus 7 ~~vgI~ai~~y~P~~~v~~~el~~~~g~~~~-------k~--~~Gig~r~~av~~---~~Ed~~~ma~~Aa~~aL~~agi 74 (467)
|+|+|.+++.|+|+++|++++++++.+..++ ++ .+||.+|+++.++ +.++..+|+++|+++||+++|+
T Consensus 1 ~~v~I~gig~~lP~~~v~n~~~~~~~~~~~~~~~~~~~~i~~~~Gi~~R~~~~~~~~~~~~~~~~La~~A~~~aL~~agi 80 (378)
T PRK06816 1 MNVYITSTGAFLPGEPVSNDEMEAYLGLINGKPSRARRIILRNNGIKTRHYALDPEGRPTHSNAQMAAEAIRDLLDDAGF 80 (378)
T ss_pred CCeEEEeeeecCCCCccCHHHHHHHHhhccCCcHHHHHHHHHhCCCceEEEEECCCCCCCCCHHHHHHHHHHHHHHHcCC
Confidence 5799999999999999999999988764322 33 3799999876543 2358899999999999999999
Q ss_pred CcCCcCEEEEEeccCCCCCCcHHHHHHHHhcccCCCCeeEEeeCCcChHHHHHHHHHHHHHHhCCCCCCEEEEEEeecc-
Q 012253 75 DPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDSA- 153 (467)
Q Consensus 75 ~~~~Id~Li~~Tes~~~~~ps~a~~v~~~Lgl~G~~~~~~~di~~aC~gg~~AL~~A~~~l~a~~~~~~~aLVV~sD~~- 153 (467)
+|+|||+||++|.+++...|+.+.+|++.||+ +++.++++.++|+|++.||+.|..+|++|.. ++||||++|.+
T Consensus 81 ~~~dId~li~~s~~~~~~~p~~a~~v~~~Lgl---~~~~~~~v~~~Cas~~~al~~A~~~i~sg~~--~~vLvv~~E~~s 155 (378)
T PRK06816 81 SLGDIELLACGTSQPDQLMPGHASMVHGELGA---PPIEVVSSAGVCAAGMMALKYAYLSVKAGES--RNAVATASELAS 155 (378)
T ss_pred CHHHCCEEEEEECCCCcCChHHHHHHHhhCCC---CCCceeeecCcCHHHHHHHHHHHHHHHCCCC--CEEEEEeEccch
Confidence 99999999999999887789999999999997 5578999999999999999999999999955 99999999997
Q ss_pred cccCC----------------CC--------CCccccceeEEEecCCCC---cee--ecccccccccCc-----------
Q 012253 154 VYAEG----------------PA--------RPTGGAAAVAMLIGPDAP---IAF--ESKLRGSHMSHA----------- 193 (467)
Q Consensus 154 ~y~~~----------------~~--------~~t~GdGAvA~Ll~~~~~---~~~--~~~~~~~~~~~~----------- 193 (467)
+..+. +. ..++||||+|+||++.+. +.+ .....+++..+.
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fGDGA~A~vl~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~g~~~~ 235 (378)
T PRK06816 156 RWFRASRFEAEEEKLAELEENPEIAFEKDFLRWMLSDGAGAVLLENKPRPDGLSLRIDWIDLRSYAGELPVCMYAGAEKN 235 (378)
T ss_pred hhhhhhhhhhHHHHhhcCcccCCCCCCCCCCCEeeecccEEEEEEecCCCCCceEEEEEEeeecccccCccceecCCccC
Confidence 22110 11 126899999999997653 111 110111121111
Q ss_pred ----ccccccCCCCCCceecCcchHHHHHHHHHHHHH-----HHHHHHHhhhcCCCCccccceeccCCchHHHHHHHHHh
Q 012253 194 ----YDFYKPNLASEYPVVDGKLSQTCYLMALDSCYK-----YFCQKFEKLEGRQFSMLDVDYFVFHSPYNKLVQKSFAR 264 (467)
Q Consensus 194 ----~df~~p~~~~~~~~vdG~~s~~~y~~a~~~~~~-----~~~~~~~~~~~~~~~~~d~d~~i~H~p~~k~~~k~~~~ 264 (467)
...|++.. .+.+..+|+..+..+...+.+.+. .+.+.+ ++++++++|||+|++||++.+|++.+.++
T Consensus 236 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L---~~~gl~~~DId~~v~Hq~n~~~~~~v~~~ 311 (378)
T PRK06816 236 EDGSLKGWSDYP-PEEAEAASALSLKQDVRLLNENIVVYTIKPLLELV---DKRNLDPDDIDYFLPHYSSEYFREKIVEL 311 (378)
T ss_pred CCCCccCcccCC-HHHHHhccCchHHhHHHHHHHHhHHHHHHHHHHHH---HHcCCChhhCCEEeeCcccHHHHHHHHHH
Confidence 01122110 011123344433333333332221 122222 56689999999999999999999999988
Q ss_pred hhhhhhccccCchhhHHhhhcCCCCCCCcchhhhhhhHHHHHHHHHHHHhhhhcCCCcccccccCccccchHHHHHHHHH
Q 012253 265 LFFNDFLRNASSVDEIAKEKLAPYSTLSDVESYQSRDLEKASQQVAKQLYDLKVQPSTLIPKQVGNMYTASLYAAFASLL 344 (467)
Q Consensus 265 l~~~~~~~~~~~~~~~~~~~l~~~~g~~~e~~~~~~~~~k~~~~~~~~~~~~~~~~s~~~~~~~GN~~taS~~l~L~~~l 344 (467)
|--. .+ |+|+++.+ .+ ..++||++|||+|++|++++
T Consensus 312 l~~~---------------~~----gl~~~k~~---------~~----------------~~~~GNt~sAsipi~L~~a~ 347 (378)
T PRK06816 312 LAKA---------------GF----MIPEEKWF---------TN----------------LATVGNTGSASIYIMLDELL 347 (378)
T ss_pred HHhc---------------cC----CCChhheE---------Ee----------------ccccccccchHHHHHHHHHH
Confidence 7100 01 67777543 12 27999999999999999999
Q ss_pred hhcCcCCCCCEEEEEEeccc-cceeeEEEEEe
Q 012253 345 HEKHSSLEGKRVIMFSYGSG-LTATMFSLQLQ 375 (467)
Q Consensus 345 ~~~~~~~~G~~ill~syGsG-~~~~~~~~~~~ 375 (467)
++ +++++||+|+++++||| +..++++++|+
T Consensus 348 ~~-g~~~~Gd~vl~~~~~s~~~~~~~~~~~~~ 378 (378)
T PRK06816 348 NS-GRLKPGQKILCFVPESGRFSTAFMLLTVV 378 (378)
T ss_pred Hc-CCCCCCCEEEEEEecccchhheeEEEEEC
Confidence 98 88999999999999987 99999999984
|
|
| >cd00827 init_cond_enzymes "initiating" condensing enzymes are a subclass of decarboxylating condensing enzymes, including beta-ketoacyl [ACP] synthase, type III and polyketide synthases, type III, which include chalcone synthase and related enzymes | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-39 Score=321.47 Aligned_cols=304 Identities=37% Similarity=0.510 Sum_probs=228.8
Q ss_pred eeEEeEEEEecCCceeehhHHhhhhCCCcCeeEEeccceEeeccCCCCCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEec
Q 012253 8 NVGILALDIYFPPTCVLQEALEVHDGVSKGKYTVGLGQDCMAFCSEVEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSE 87 (467)
Q Consensus 8 ~vgI~ai~~y~P~~~v~~~el~~~~g~~~~k~~~Gig~r~~av~~~~Ed~~~ma~~Aa~~aL~~agi~~~~Id~Li~~Te 87 (467)
.|+|.++++|+|+++++++++++..+.+.-...+|+.+|++. .++++..+|+++|++++|+++|+++++||.|+++++
T Consensus 1 ~v~I~~i~~~lP~~~v~~~~~~~~~~~~~~~~~~gi~~r~~~--~~~~~~~~l~~~a~~~aL~~ag~~~~~Id~li~~~~ 78 (324)
T cd00827 1 DVGIEAIGAYLPRYRVDNEELAEGLGVDPGKYTTGIGQRHMA--GDDEDVPTMAVEAARRALERAGIDPDDIGLLIVATE 78 (324)
T ss_pred CccEEEEEecCCceeecHHHHHHHhCCCcceeeeecceeEec--CCCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEEcC
Confidence 479999999999999999999999887633445789988865 457999999999999999999999999999999999
Q ss_pred cCCCCCCcHHHHHHHHhcccCCCCeeEEeeCCcChHHHHHHHHHHHHHHhCCCCCCEEEEEEeeccccc---CCCCCCcc
Q 012253 88 TVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDSAVYA---EGPARPTG 164 (467)
Q Consensus 88 s~~~~~ps~a~~v~~~Lgl~G~~~~~~~di~~aC~gg~~AL~~A~~~l~a~~~~~~~aLVV~sD~~~y~---~~~~~~t~ 164 (467)
++.+..|+.+.+|++.||+ +++.++++.++|++++.||..|..+|++|.. +++|||++|.+... ......++
T Consensus 79 ~~~~~~~~~~~~i~~~lg~---~~~~~~~v~~~C~s~~~al~~A~~~i~~g~~--~~vlvv~~e~~~~~~~~~~~~~~~~ 153 (324)
T cd00827 79 SPIDKGKSAATYLAELLGL---TNAEAFDLKQACYGGTAALQLAANLVESGPW--RYALVVASDIASYLLDEGSALEPTL 153 (324)
T ss_pred CCCCCCccHHHHHHHHcCC---CCCceeehhhhhHHHHHHHHHHHHHHHcCCC--CEEEEEEEHHhhhcccCCCCccccc
Confidence 9887789999999999998 4899999999999999999999999999955 99999999998322 23356789
Q ss_pred ccceeEEEecCCCC---ceeecccccccccC------cccccccCC----CCCCceecC--cchHHHHHHHHHHHHHHHH
Q 012253 165 GAAAVAMLIGPDAP---IAFESKLRGSHMSH------AYDFYKPNL----ASEYPVVDG--KLSQTCYLMALDSCYKYFC 229 (467)
Q Consensus 165 GdGAvA~Ll~~~~~---~~~~~~~~~~~~~~------~~df~~p~~----~~~~~~vdG--~~s~~~y~~a~~~~~~~~~ 229 (467)
||||+|+||++++. ..+......+.... ..++..+.. .......++ ......+...+..+.+..+
T Consensus 154 gdgaaA~ll~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 233 (324)
T cd00827 154 GDGAAAMLVSRNPGILAAGIVSTHSTSDPGYDFSPYPVMDGGYPKPCKLAYAIRLTAEPAGRAVFEAAHKLIAKVVRKAL 233 (324)
T ss_pred cCceEEEEEecCcccccCCceeeeeecccccccCccceeccCCCcchhhhhhcceeecCCccchHHHHhHHHHHHHHHHH
Confidence 99999999998864 22221111111110 111111100 000011233 2222233333444443333
Q ss_pred HHHHhhhcCCCCccccceeccCCchH-HHHHHHHHhhhhhhhccccCchhhHHhhhcCCCCCCCcchhhhhhhHHHHHHH
Q 012253 230 QKFEKLEGRQFSMLDVDYFVFHSPYN-KLVQKSFARLFFNDFLRNASSVDEIAKEKLAPYSTLSDVESYQSRDLEKASQQ 308 (467)
Q Consensus 230 ~~~~~~~~~~~~~~d~d~~i~H~p~~-k~~~k~~~~l~~~~~~~~~~~~~~~~~~~l~~~~g~~~e~~~~~~~~~k~~~~ 308 (467)
++.+++ +|+|+|++||++. ++++...++| +++.++...++.
T Consensus 234 ------~~~~~~-~~i~~~~~h~~~~~~~~~~~~~~l------------------------~~~~~~~~~~~~------- 275 (324)
T cd00827 234 ------DRAGLS-EDIDYFVPHQPNGKKILEAVAKKL------------------------GGPPEKASQTRW------- 275 (324)
T ss_pred ------HHcccc-cccceeeccCchHHHHHHHHHHHc------------------------cchHhhhccchh-------
Confidence 344677 8999999999999 9999988887 454443221100
Q ss_pred HHHHHhhhhcCCCcccccccCccccchHHHHHHHHHhhcCcCCCCCEEEEEEeccccceeeEE
Q 012253 309 VAKQLYDLKVQPSTLIPKQVGNMYTASLYAAFASLLHEKHSSLEGKRVIMFSYGSGLTATMFS 371 (467)
Q Consensus 309 ~~~~~~~~~~~~s~~~~~~~GN~~taS~~l~L~~~l~~~~~~~~G~~ill~syGsG~~~~~~~ 371 (467)
.+.+++||+++||+|++|.+++++ +++++|++|+++|+|+|+++++++
T Consensus 276 --------------~~~~~~Gn~~sa~~~~~L~~~~~~-~~~~~Gd~vl~~~~G~G~~~~~~~ 323 (324)
T cd00827 276 --------------ILLRRVGNMYAASILLGLASLLES-GKLKAGDRVLLFSYGSGFTAEAFV 323 (324)
T ss_pred --------------hHHHHhCchHHHHHHHHHHHHHhc-CCCCCCCEEEEEEeccchhheecc
Confidence 133899999999999999999998 778899999999999999998865
|
They are characterized by the utlization of CoA substrate primers, as well as the nature of their active site residues. |
| >PLN03171 chalcone synthase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-39 Score=334.71 Aligned_cols=311 Identities=18% Similarity=0.243 Sum_probs=224.4
Q ss_pred eeEEeEEEEecCCceeehhHHhhhh-C--CCcC---------ee--EEeccceEeeccCC--------------------
Q 012253 8 NVGILALDIYFPPTCVLQEALEVHD-G--VSKG---------KY--TVGLGQDCMAFCSE-------------------- 53 (467)
Q Consensus 8 ~vgI~ai~~y~P~~~v~~~el~~~~-g--~~~~---------k~--~~Gig~r~~av~~~-------------------- 53 (467)
.+.|.+++.|+|+++++|+++++.. . .+.+ ++ ++||.+|++...+.
T Consensus 22 ~~~I~gigt~~P~~~v~n~~~~~~~~~~~~~~~~~~~~~~~~~i~~~tGI~~R~~~~~~~~~~~~~~~~~~~~~~~~~r~ 101 (399)
T PLN03171 22 LAAVLAIGTANPANCVPQDEFPDFYFRATKSDHLTALKDKFKRICQELGVQKRYLHHTEELLSAHPEFLDHDAPSLDARL 101 (399)
T ss_pred CcEEEEEEeeCCCcccCHHHHHHHHHHHhcccccHHHHHHHHHHHHhcCCCceeEeccccccccCccccccCCCCHHHHH
Confidence 4789999999999999999999873 2 1222 23 47999998754310
Q ss_pred ---CCCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHhcccCCCCe-eEEeeCCcChHHHHHHH
Q 012253 54 ---VEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDI-EGVDSTNACYGGTAALF 129 (467)
Q Consensus 54 ---~Ed~~~ma~~Aa~~aL~~agi~~~~Id~Li~~Tes~~~~~ps~a~~v~~~Lgl~G~~~~-~~~di~~aC~gg~~AL~ 129 (467)
.|.+.+||++|+++||+++|++++|||+||++|+|+++ .|+++.+|+++||+ +..+ +++++.+||+|+++||+
T Consensus 102 ~~~~~~a~~la~~Aa~~aL~~ag~~~~dId~li~~t~t~~~-~P~~a~~v~~~LGl--~~~~~~~~~~~~gC~g~~~aL~ 178 (399)
T PLN03171 102 DIAADAVPELAAEAAKKAIAEWGRPAADITHLVVTTNSGAH-IPGVDFRLVPLLGL--RPSVRRTMLHLNGCFAGAAALR 178 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEEcCCCCC-CCchHHHHHHHhCC--CcccceeeccCCccHHHHHHHH
Confidence 04799999999999999999999999999999999986 89999999999998 4444 36788889999999999
Q ss_pred HHHHHHHhCCCCCCEEEEEEeecc-cccCCCC---------CCccccceeEEEecCCCC------ceeeccccccccc--
Q 012253 130 NCVNWVESASWDGRYGLVVCTDSA-VYAEGPA---------RPTGGAAAVAMLIGPDAP------IAFESKLRGSHMS-- 191 (467)
Q Consensus 130 ~A~~~l~a~~~~~~~aLVV~sD~~-~y~~~~~---------~~t~GdGAvA~Ll~~~~~------~~~~~~~~~~~~~-- 191 (467)
+|.+|++++. .++||||++|.+ ++-++++ ..+|||||+|+||++.+. +.+......+...
T Consensus 179 ~A~~li~~~~--~~~vLVv~~e~~s~~~~~~d~~~~~~~v~~~LFGDGAaA~vl~~~~~~~~~~~~~l~~~~~~~~p~~~ 256 (399)
T PLN03171 179 LAKDLAENNR--GARVLVVAAEITLLLFNGPDEGCFQTLLNQGLFGDGAAAVIVGADADAAERPLFEIVSAAQAIIPESD 256 (399)
T ss_pred HHHHHHHhCC--CCeEEEEEEeccccccCCCCcccHHhhhccccccCccEEEEEecCCCCCCCCceEEEEeeeEEecCCc
Confidence 9999999994 499999999997 3333322 247899999999998642 1121100000000
Q ss_pred CcccccccCCCCCCceecCcchHHHHHHHHHHHHHHHHHHH-Hhh--hcCCCCccccceeccCCchHHHHHHHHHhhhhh
Q 012253 192 HAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKYFCQKF-EKL--EGRQFSMLDVDYFVFHSPYNKLVQKSFARLFFN 268 (467)
Q Consensus 192 ~~~df~~p~~~~~~~~vdG~~s~~~y~~a~~~~~~~~~~~~-~~~--~~~~~~~~d~d~~i~H~p~~k~~~k~~~~l~~~ 268 (467)
+.+.+..+..+ ++++++.......+....+...++. ... ...++..+|++|+ +||++.+|++.+.++|
T Consensus 257 ~~~~~~~~~~g-----~~~~~~~~~vp~~i~~~l~~~l~~~l~~~~~~~~g~~~~di~~~-~Hq~~~~il~~v~~~L--- 327 (399)
T PLN03171 257 DAINMHFTEGG-----LDGNIGTRQVPGLIGDNIERCLLDAFAPLLGGDGGAEWNDLFWA-VHPGSSAILDQVDAAL--- 327 (399)
T ss_pred hheEEEEEcCC-----ceEEECchhHHHHHHHHHHHHHHHHHHhhcccccCCCcccceEE-EcCCcHHHHHHHHHHc---
Confidence 11111111111 2334443333334433333333221 000 1235778899887 5999999999999888
Q ss_pred hhccccCchhhHHhhhcCCCCCCCcchhhhhhhHHHHHHHHHHHHhhhhcCCCcccccccCccccchHHHHHHHHHhhcC
Q 012253 269 DFLRNASSVDEIAKEKLAPYSTLSDVESYQSRDLEKASQQVAKQLYDLKVQPSTLIPKQVGNMYTASLYAAFASLLHEKH 348 (467)
Q Consensus 269 ~~~~~~~~~~~~~~~~l~~~~g~~~e~~~~~~~~~k~~~~~~~~~~~~~~~~s~~~~~~~GN~~taS~~l~L~~~l~~~~ 348 (467)
|+++++.. .|+.+.+++|||+|+|++++|..++++ +
T Consensus 328 ---------------------gl~~ek~~----------------------~s~~~l~~yGNtssaSip~~L~~~~~~-~ 363 (399)
T PLN03171 328 ---------------------GLEPEKLA----------------------ASRRVLSDYGNMFGATVIFALDELRRQ-M 363 (399)
T ss_pred ---------------------CCCHHHhH----------------------HHHHHHHHhCcchhhhHHHHHHHHHhh-H
Confidence 78877532 111223899999999999999999987 4
Q ss_pred c--CCCC---CEEEEEEeccccceeeEEEEEec
Q 012253 349 S--SLEG---KRVIMFSYGSGLTATMFSLQLQE 376 (467)
Q Consensus 349 ~--~~~G---~~ill~syGsG~~~~~~~~~~~~ 376 (467)
+ +++| ++|+|++||+|++|++.+++|..
T Consensus 364 ~~~~~~G~~~d~vll~~fG~Glt~~~~ll~~~~ 396 (399)
T PLN03171 364 EEAAAAGAWPELGVMMAFGPGLTVDAMLLHASG 396 (399)
T ss_pred hhcCCCCCCcceEEEEEEcccHHHHHHHhhccc
Confidence 3 4677 99999999999999999999864
|
|
| >PLN03172 chalcone synthase family protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-38 Score=321.45 Aligned_cols=309 Identities=16% Similarity=0.219 Sum_probs=222.2
Q ss_pred eeEEeEEEEecCCceeehhHHhhhhC----C-C-c--C-ee-----EEeccceEeeccC---C-C---------------
Q 012253 8 NVGILALDIYFPPTCVLQEALEVHDG----V-S-K--G-KY-----TVGLGQDCMAFCS---E-V--------------- 54 (467)
Q Consensus 8 ~vgI~ai~~y~P~~~v~~~el~~~~g----~-~-~--~-k~-----~~Gig~r~~av~~---~-~--------------- 54 (467)
.+.|.+|+..+|++.++|+|+.++.. . + + . ++ ..||..|++.+.+ + .
T Consensus 16 ~~~I~~igta~P~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~i~~~sgI~~R~~~~~~~~~~~~~~~~~~~~p~~~~r~ 95 (393)
T PLN03172 16 PATILAIGKATPANCVSQADYPDYYFRITNSEHMTELKEKFKRMCDKSMIKKRYMHLTEEILKENPNMCAYMAPSLDARQ 95 (393)
T ss_pred CeEEEEEEecCCCccccHHHHHHHHHHHhcccCchHHHHHHHHHHHhcCCCceeEeccchhhhhCccccccCCCCHHHHH
Confidence 36799999999999999999887742 1 1 1 1 12 3799999886621 0 0
Q ss_pred ----CCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHhcccCCCCee-EEeeCCcChHHHHHHH
Q 012253 55 ----EDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIE-GVDSTNACYGGTAALF 129 (467)
Q Consensus 55 ----Ed~~~ma~~Aa~~aL~~agi~~~~Id~Li~~Tes~~~~~ps~a~~v~~~Lgl~G~~~~~-~~di~~aC~gg~~AL~ 129 (467)
+.+.+||++|+++||+++|++++|||+||++|+|+.+ .|+++.+|+++||+ ++.+. .++++.||+|++.||.
T Consensus 96 ~~~~~~a~~La~~Aa~~aL~~ag~~~~dId~ii~~t~t~~~-~P~~a~~l~~~LGl--~~~~~~~~~~~~gC~g~~~aL~ 172 (393)
T PLN03172 96 DMVVVEVPKLGKEAAAKAIKEWGQPKSKITHLVFCTTSGVD-MPGADYQLTKLLGL--KPSVKRFMMYQQGCFAGGTVLR 172 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEEccCCCc-CchHHHHHHHHhCC--CCCceEEeeeCCchHHHHHHHH
Confidence 1256999999999999999999999999999999976 89999999999998 56664 4788999999999999
Q ss_pred HHHHHHHhCCCCCCEEEEEEeeccc--ccCCC--------CCCccccceeEEEecCCCCceee-c--cccccc------c
Q 012253 130 NCVNWVESASWDGRYGLVVCTDSAV--YAEGP--------ARPTGGAAAVAMLIGPDAPIAFE-S--KLRGSH------M 190 (467)
Q Consensus 130 ~A~~~l~a~~~~~~~aLVV~sD~~~--y~~~~--------~~~t~GdGAvA~Ll~~~~~~~~~-~--~~~~~~------~ 190 (467)
+|.++++++ ++++||||++|++. +.+.. ....|||||+|+||++++.-.++ + .+.++. +
T Consensus 173 ~A~~~~~~~--~~~~vLVV~~E~~S~~~~~~~d~~~~~~v~~~LFGDGAaAvVl~~~~~~~~~~~~~~i~~~~~~~~~~t 250 (393)
T PLN03172 173 LAKDLAENN--AGSRVLVVCSEITAVTFRGPSDTHLDSLVGQALFGDGAAAVIIGADPDTKIERPLFEIVSAAQTILPDS 250 (393)
T ss_pred HHHHHHHcC--CCCeEEEEEEehhhhhhcccccccHHhhhccchhcCceEEEEEecCCCCcccCceeEEeeeccEEecCC
Confidence 999999999 55999999999983 32221 13679999999999986421100 0 011111 1
Q ss_pred cCccccc-ccCCCCCCceecCcchHHHHHHHHHHHHHHHHHHHHhhhcCCCCccccceeccCCchHHHHHHHHHhhhhhh
Q 012253 191 SHAYDFY-KPNLASEYPVVDGKLSQTCYLMALDSCYKYFCQKFEKLEGRQFSMLDVDYFVFHSPYNKLVQKSFARLFFND 269 (467)
Q Consensus 191 ~~~~df~-~p~~~~~~~~vdG~~s~~~y~~a~~~~~~~~~~~~~~~~~~~~~~~d~d~~i~H~p~~k~~~k~~~~l~~~~ 269 (467)
.+.+.+. +.. +.. . .++...+..+.....+.+.+.+ .++++...|+|+|++||++.++++.+.++|
T Consensus 251 ~~~~~~~i~~~-G~~-~----~l~~~vp~~~~~~i~~~~~~~L---~~~gl~~~di~~~~~Hqgg~~Il~~v~~~L---- 317 (393)
T PLN03172 251 DGAIDGHLREV-GLT-F----HLLKDVPGLISKNIEKSLVEAF---APIGINDWNSIFWIAHPGGPAILDQVEIKL---- 317 (393)
T ss_pred cccccceEEcC-CcE-E----EEechHHHHHHHHHHHHHHHHh---hhcCCCccccceEEecCCcHHHHHHHHHHc----
Confidence 1111111 111 110 0 1122222222222222222222 455788899999999999999999999988
Q ss_pred hccccCchhhHHhhhcCCCCCCCcchhhhhhhHHHHHHHHHHHHhhhhcCCCcccccccCccccchHHHHHHHHHhh---
Q 012253 270 FLRNASSVDEIAKEKLAPYSTLSDVESYQSRDLEKASQQVAKQLYDLKVQPSTLIPKQVGNMYTASLYAAFASLLHE--- 346 (467)
Q Consensus 270 ~~~~~~~~~~~~~~~l~~~~g~~~e~~~~~~~~~k~~~~~~~~~~~~~~~~s~~~~~~~GN~~taS~~l~L~~~l~~--- 346 (467)
++++++. .+|+.+.+++|||+|+|++++|..++++
T Consensus 318 --------------------gl~~~~~----------------------~~s~~vl~~yGNtSSaSv~~vL~~~~~~~~~ 355 (393)
T PLN03172 318 --------------------DLKEEKL----------------------RATRHVLSDYGNMSSACVLFILDEMRKKSIE 355 (393)
T ss_pred --------------------CCCHHHH----------------------HHHHHHHHHhCccHHhHHHHHHHHHHhhhhh
Confidence 6776643 2333445899999999999999998742
Q ss_pred cCcCCCC---CEEEEEEeccccceeeEEEEEec
Q 012253 347 KHSSLEG---KRVIMFSYGSGLTATMFSLQLQE 376 (467)
Q Consensus 347 ~~~~~~G---~~ill~syGsG~~~~~~~~~~~~ 376 (467)
.+++++| ++++|++||+|+++++++++|.+
T Consensus 356 ~g~~~~G~~~~~~ll~afGpG~t~~~~ll~~~~ 388 (393)
T PLN03172 356 EGKGSTGEGLEWGVLFGFGPGLTVETVVLHSVP 388 (393)
T ss_pred cCCCCCCCCcceEEEEEeCCcceeeeeeeEecc
Confidence 2455555 88999999999999999999964
|
|
| >PLN03168 chalcone synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-38 Score=323.76 Aligned_cols=308 Identities=16% Similarity=0.183 Sum_probs=219.3
Q ss_pred eeEEeEEEEecCCceeehhHHhhhhCC------Cc---Cee-----EEeccceEeeccCC--------------------
Q 012253 8 NVGILALDIYFPPTCVLQEALEVHDGV------SK---GKY-----TVGLGQDCMAFCSE-------------------- 53 (467)
Q Consensus 8 ~vgI~ai~~y~P~~~v~~~el~~~~g~------~~---~k~-----~~Gig~r~~av~~~-------------------- 53 (467)
.+.|.+|+...|+++++|+++.++... .+ .++ ..||..|++.++..
T Consensus 15 ~~~i~~i~ta~P~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~i~~~sgI~~R~~~~~~~~~~~~~~~~~~~~ps~~~r~ 94 (389)
T PLN03168 15 PACVLGIGTAVPPAEFLQSEYPDFFFNITNCGEKEALKAKFKRICDKSGIRKRHMFLTEEVLKANPGICTYMEPSLNVRH 94 (389)
T ss_pred CeEEEEEeccCCCcccCHHHHHHHHHHhccccCcHHHHHHHHHHHHhcCCCeeeeeccccchhhCcccccccCCCHHHHH
Confidence 377999999999999999998877421 11 123 37999999866321
Q ss_pred ---CCCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHhcccCCCCe-eEEeeCCcChHHHHHHH
Q 012253 54 ---VEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDI-EGVDSTNACYGGTAALF 129 (467)
Q Consensus 54 ---~Ed~~~ma~~Aa~~aL~~agi~~~~Id~Li~~Tes~~~~~ps~a~~v~~~Lgl~G~~~~-~~~di~~aC~gg~~AL~ 129 (467)
.+.+.+||++|+++||+++|++++|||+||++|+|+. ..|+++.+|+++||+ ++.+ +++|++.||+||++||.
T Consensus 95 ~~~~~~a~~La~~Aa~~AL~~ag~~~~dId~lI~~T~Tg~-~~Ps~a~~l~~~LGl--~~~~~r~~d~~~gC~g~~~aL~ 171 (389)
T PLN03168 95 DIVVVQVPKLAAEAAQKAIKEWGGRKSDITHIVFATTSGV-NMPGADHALAKLLGL--KPTVKRVMMYQTGCFGGASVLR 171 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEECCCCC-CCccHHHHHHHHhCc--CCcceeeeeeCCccHHHHHHHH
Confidence 0147899999999999999999999999999999995 489999999999998 4554 58999999999999999
Q ss_pred HHHHHHHhCCCCCCEEEEEEeecc--cccCC--C------CCCccccceeEEEecCCCCceeecccccccccCccccccc
Q 012253 130 NCVNWVESASWDGRYGLVVCTDSA--VYAEG--P------ARPTGGAAAVAMLIGPDAPIAFESKLRGSHMSHAYDFYKP 199 (467)
Q Consensus 130 ~A~~~l~a~~~~~~~aLVV~sD~~--~y~~~--~------~~~t~GdGAvA~Ll~~~~~~~~~~~~~~~~~~~~~df~~p 199 (467)
+|.++++++ +.++||||++|++ .+.+. . ...+|||||+|+||++++.-..+.+....+... ....|
T Consensus 172 ~A~~~i~~~--~~~~VLVV~~E~~S~~~~~~~~~~~~~~~~~~LFGDGAaAvvl~~~~~~~~~~~~~~~~~~~--~~~~p 247 (389)
T PLN03168 172 VAKDLAENN--KGARVLAVASEVTAVTYRAPSENHLDGLVGSALFGDGAGVYVVGSDPKPEVEKALFEVHWAG--ETILP 247 (389)
T ss_pred HHHHHHHhC--CCCEEEEEEEehhhhhccCcccccHHHHhccccccCccEEEEEecCCCCccCCcceEEEeee--eEEEc
Confidence 999999999 5599999999998 33221 1 246799999999999864210000111111110 00111
Q ss_pred CC-C--------CCCceecCcchHHHHHHHHHHHHHHHHHHHHhhhcCCCCccccceeccCCchHHHHHHHHHhhhhhhh
Q 012253 200 NL-A--------SEYPVVDGKLSQTCYLMALDSCYKYFCQKFEKLEGRQFSMLDVDYFVFHSPYNKLVQKSFARLFFNDF 270 (467)
Q Consensus 200 ~~-~--------~~~~~vdG~~s~~~y~~a~~~~~~~~~~~~~~~~~~~~~~~d~d~~i~H~p~~k~~~k~~~~l~~~~~ 270 (467)
.. + ..+..+..+.......+.+..+.+.+. ...+....|+++|++||++.++++.+.++|
T Consensus 248 ~s~~~~~~~~~~~g~~~~l~~~vp~~i~~~~~~~l~~~l------~~~~~~~~d~~~~v~Hqgg~~Il~~v~~~L----- 316 (389)
T PLN03168 248 ESDGAIDGHLTEAGLIFHLMKDVPGLISKNIEKFLNEAR------KCVGSPDWNEMFWAVHPGGPAILDQVEAKL----- 316 (389)
T ss_pred CCCCccCceEecCceEEEECHHHHHHHHHHHHHHHHHHH------HhcCCCccccceEEecCCcHHHHHHHHHHc-----
Confidence 10 0 001111111111122223333333332 233455567899999999999999999988
Q ss_pred ccccCchhhHHhhhcCCCCCCCcchhhhhhhHHHHHHHHHHHHhhhhcCCCcccccccCccccchHHHHHHHHHhhcCcC
Q 012253 271 LRNASSVDEIAKEKLAPYSTLSDVESYQSRDLEKASQQVAKQLYDLKVQPSTLIPKQVGNMYTASLYAAFASLLHEKHSS 350 (467)
Q Consensus 271 ~~~~~~~~~~~~~~l~~~~g~~~e~~~~~~~~~k~~~~~~~~~~~~~~~~s~~~~~~~GN~~taS~~l~L~~~l~~~~~~ 350 (467)
|+++++.. .|+.+.+++|||+|||+++.|..++++ ++
T Consensus 317 -------------------gl~~ek~~----------------------~s~~vl~~yGNtSSaSv~~vL~~~~~~--~~ 353 (389)
T PLN03168 317 -------------------KLTKDKMQ----------------------GSRDILSEFGNMSSASVLFVLDQIRQR--SV 353 (389)
T ss_pred -------------------CCCHHHHH----------------------HHHHHHHHhCccHhhhHHHHHHHHHHH--Hh
Confidence 78877542 222334899999999999999998764 22
Q ss_pred CC--------CCEEEEEEeccccceeeEEEEEec
Q 012253 351 LE--------GKRVIMFSYGSGLTATMFSLQLQE 376 (467)
Q Consensus 351 ~~--------G~~ill~syGsG~~~~~~~~~~~~ 376 (467)
++ |++++|++||+|+++++++++|..
T Consensus 354 ~~g~~~~~~g~~~~ll~afGpG~t~~~~llr~~~ 387 (389)
T PLN03168 354 KMGASTLGEGSEFGFFIGFGPGLTLEVLVLRAAA 387 (389)
T ss_pred hcCCCCCCCCccEEEEEEEcchhhhhhhhheecc
Confidence 23 289999999999999999999864
|
|
| >PLN03170 chalcone synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-38 Score=322.87 Aligned_cols=306 Identities=16% Similarity=0.223 Sum_probs=223.5
Q ss_pred eEEeEEEEecCCceeehhHHhhhhCC-----C-c--C-ee-----EEeccceEeeccCC----C----------------
Q 012253 9 VGILALDIYFPPTCVLQEALEVHDGV-----S-K--G-KY-----TVGLGQDCMAFCSE----V---------------- 54 (467)
Q Consensus 9 vgI~ai~~y~P~~~v~~~el~~~~g~-----~-~--~-k~-----~~Gig~r~~av~~~----~---------------- 54 (467)
..|.+|+..+|++.++|+++.++... + + . ++ ..||..|++.+.+. +
T Consensus 21 ~~i~~i~ta~P~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~i~~~sgI~~R~~~~~~~~~~~~~~~~~~~~p~~~~r~~ 100 (401)
T PLN03170 21 ATVLAIGTATPANCVHQADYPDYYFRITKSEHMTELKEKFKRMCDKSQIRKRYMHLTEEYLAENPNMCAYMAPSLDARQD 100 (401)
T ss_pred eEEEEEeecCCCccccHHHHHHHHHHHccccCchhHHHHHHHHHHhCCCCceeEeccccchhhCccccccCCCCHHHHHH
Confidence 67999999999999999998877421 1 1 1 22 37999998765210 0
Q ss_pred ---CCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHhcccCCCCe-eEEeeCCcChHHHHHHHH
Q 012253 55 ---EDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDI-EGVDSTNACYGGTAALFN 130 (467)
Q Consensus 55 ---Ed~~~ma~~Aa~~aL~~agi~~~~Id~Li~~Tes~~~~~ps~a~~v~~~Lgl~G~~~~-~~~di~~aC~gg~~AL~~ 130 (467)
+.+.+||++|+++||+++|++++|||+||++|+|+.+ .|+++.+|+++||+ .+.+ +++|++.||+|+++||.+
T Consensus 101 ~~~~~a~~La~~Aa~~AL~~ag~~~~dId~lI~~T~Tg~~-~Ps~a~~l~~~LGl--~~~~~r~~d~~~gC~G~~~aL~~ 177 (401)
T PLN03170 101 IVVVEVPKLGKAAAQKAIKEWGQPKSKITHLVFCTTSGVD-MPGADYQLTKMLGL--RPSVNRLMMYQQGCFAGGTVLRV 177 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEEccCCCC-CChHHHHHHHHhCc--CcccHHHHhhcChhHHHHHHHHH
Confidence 1257799999999999999999999999999999976 99999999999998 4555 589999999999999999
Q ss_pred HHHHHHhCCCCCCEEEEEEeecc--cccCCC--------CCCccccceeEEEecCCCCceeec---ccccccccCccccc
Q 012253 131 CVNWVESASWDGRYGLVVCTDSA--VYAEGP--------ARPTGGAAAVAMLIGPDAPIAFES---KLRGSHMSHAYDFY 197 (467)
Q Consensus 131 A~~~l~a~~~~~~~aLVV~sD~~--~y~~~~--------~~~t~GdGAvA~Ll~~~~~~~~~~---~~~~~~~~~~~df~ 197 (467)
|.++++++ +.++||||++|++ .+.+.. ....|||||+|+||++++.-.+.. .+.... ...
T Consensus 178 A~~l~~~~--~~~~vLVV~~E~~S~~~~~~~~~~~~~~~~~~LFGDGAaAvVl~~~~~~~~~~~~~~l~~~~-----~~~ 250 (401)
T PLN03170 178 AKDLAENN--RGARVLVVCSEITAVTFRGPSESHLDSMVGQALFGDGAAAVIVGADPDERVERPLFQLVSAS-----QTI 250 (401)
T ss_pred HHHHHHcC--CCCeEEEEEEehhhhccCCcccchhhhhhhhhhhhceeEEEEEecCCcccccCCceEEeecc-----ceE
Confidence 99999999 5599999999997 332211 136799999999999865311100 011110 011
Q ss_pred ccCCCC--CC-ceecC------cchHHHHHHHHHHHHHHHHHHHHhhhcCCCCccccceeccCCchHHHHHHHHHhhhhh
Q 012253 198 KPNLAS--EY-PVVDG------KLSQTCYLMALDSCYKYFCQKFEKLEGRQFSMLDVDYFVFHSPYNKLVQKSFARLFFN 268 (467)
Q Consensus 198 ~p~~~~--~~-~~vdG------~~s~~~y~~a~~~~~~~~~~~~~~~~~~~~~~~d~d~~i~H~p~~k~~~k~~~~l~~~ 268 (467)
.|.... .+ ...+| +.......+.+..+.+.++ .++++..+|+++|++||++.++++.+.++|
T Consensus 251 ~p~~~~~~~~~i~~~G~~~~l~~~vp~~~~~~i~~~v~~~L------~~~gl~~~di~~~v~Hqgg~~il~~v~~~L--- 321 (401)
T PLN03170 251 LPDSEGAIDGHLREVGLTFHLLKDVPGLISKNIERSLEEAF------KPLGITDYNSIFWVAHPGGPAILDQVEAKV--- 321 (401)
T ss_pred ecCCcccccceEEcCCeEEEEehHHHHHHHHHHHHHHHHHH------HhcCCCccccCeEEecCCcHHHHHHHHHHc---
Confidence 121000 00 01122 2222222333333333333 445788899999999999999999999888
Q ss_pred hhccccCchhhHHhhhcCCCCCCCcchhhhhhhHHHHHHHHHHHHhhhhcCCCcccccccCccccchHHHHHHHHHh---
Q 012253 269 DFLRNASSVDEIAKEKLAPYSTLSDVESYQSRDLEKASQQVAKQLYDLKVQPSTLIPKQVGNMYTASLYAAFASLLH--- 345 (467)
Q Consensus 269 ~~~~~~~~~~~~~~~~l~~~~g~~~e~~~~~~~~~k~~~~~~~~~~~~~~~~s~~~~~~~GN~~taS~~l~L~~~l~--- 345 (467)
|+++++. .+|+.+.+++|||+|+|++++|..+++
T Consensus 322 ---------------------gl~~~~~----------------------~~s~~~l~~~GNtsSasv~~vL~~~~~~~~ 358 (401)
T PLN03170 322 ---------------------GLEKERM----------------------RATRHVLSEYGNMSSACVLFILDEMRKRSA 358 (401)
T ss_pred ---------------------CCChHHH----------------------HHHHHHHHHhCccHHhHHHHHHHHHHHhHh
Confidence 7777643 223344589999999999999999984
Q ss_pred hcCcCCCC---CEEEEEEeccccceeeEEEEEec
Q 012253 346 EKHSSLEG---KRVIMFSYGSGLTATMFSLQLQE 376 (467)
Q Consensus 346 ~~~~~~~G---~~ill~syGsG~~~~~~~~~~~~ 376 (467)
+.+++++| ++++|++||+|+++++.+++|.+
T Consensus 359 ~~g~~~~G~~~~~~ll~afGpG~t~~~~ll~~~~ 392 (401)
T PLN03170 359 EDGQATTGEGFDWGVLFGFGPGLTVETVVLHSVP 392 (401)
T ss_pred hcCCCCCCCCccEEEEEEeCchHhHHhHHheecc
Confidence 22566677 89999999999999999999966
|
|
| >PLN03173 chalcone synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-37 Score=317.44 Aligned_cols=309 Identities=17% Similarity=0.214 Sum_probs=221.2
Q ss_pred eeEEeEEEEecCCceeehhHHhhhhC------CCcC---ee-----EEeccceEeeccCC----C---------------
Q 012253 8 NVGILALDIYFPPTCVLQEALEVHDG------VSKG---KY-----TVGLGQDCMAFCSE----V--------------- 54 (467)
Q Consensus 8 ~vgI~ai~~y~P~~~v~~~el~~~~g------~~~~---k~-----~~Gig~r~~av~~~----~--------------- 54 (467)
.+.|.+++...|++.++|+++.++.. ..+. ++ ..||..|++.+++. .
T Consensus 16 ~~~i~~i~ta~P~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~i~~~sgI~~R~~~~~~~~~~~~~~~~~~~~p~~~~r~ 95 (391)
T PLN03173 16 PATIMAIGTSTPPNCVDQSTYPDYYFRITNSEHKVELKEKFKRMCEKSMIKKRYMHLTEEILKENPSVCEYMAPSLDARQ 95 (391)
T ss_pred CeEEEEEEccCCCcccCHHHHHHHHHHHhccccchhHHHHHHHHHHhCCCCeeeEeccchhhhhCcccccccCCCHHHHH
Confidence 37799999999999999999887741 1121 12 37999998766311 0
Q ss_pred ----CCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHhcccCCCCe-eEEeeCCcChHHHHHHH
Q 012253 55 ----EDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDI-EGVDSTNACYGGTAALF 129 (467)
Q Consensus 55 ----Ed~~~ma~~Aa~~aL~~agi~~~~Id~Li~~Tes~~~~~ps~a~~v~~~Lgl~G~~~~-~~~di~~aC~gg~~AL~ 129 (467)
+.+.+||++|+++||+++|++++|||+||++|+|+.+ .|+++.+|+++||+ .+.+ +.++++.||+|++.||.
T Consensus 96 ~~~~~~a~~La~~Aa~~AL~~ag~~~~dId~li~~t~t~~~-~P~~a~~l~~~LGl--~~~~~~~~~~~~gC~g~~~aL~ 172 (391)
T PLN03173 96 DMVVVEVPKLGKEAAAKAIKEWGQPKSKITHLVFCTTSGVD-MPGADYQLTKLLGL--RSSVKRFMMYQQGCFAGGTVLR 172 (391)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEEccCCCc-ccHHHHHHHHHhCC--CccceeeehhcCccHHHHHHHH
Confidence 1257999999999999999999999999999999976 79999999999998 5556 46788999999999999
Q ss_pred HHHHHHHhCCCCCCEEEEEEeeccc--ccCCCC--------CCccccceeEEEecCCCCceeec---cccccc------c
Q 012253 130 NCVNWVESASWDGRYGLVVCTDSAV--YAEGPA--------RPTGGAAAVAMLIGPDAPIAFES---KLRGSH------M 190 (467)
Q Consensus 130 ~A~~~l~a~~~~~~~aLVV~sD~~~--y~~~~~--------~~t~GdGAvA~Ll~~~~~~~~~~---~~~~~~------~ 190 (467)
+|.++++++ ++++||||++|++. +.+..+ ...|||||+|+||++++...++. .+.++. +
T Consensus 173 ~A~~~~~~~--~~~~vLVV~~E~~S~~~~~~~d~~~~~~v~~~LFGDGAaAvvl~~~~~~~~~~~~~~l~~~~~~~~~~t 250 (391)
T PLN03173 173 LAKDLAENN--KGARVLVVCSEITAVTFRGPSDTHLDSLVGQALFGDGAAAIIIGSDPVLGVEKPLFELVSAAQTILPDS 250 (391)
T ss_pred HHHHHHHhC--CCCeEEEEEEehhhhhhCCccccchhhhhhhhhhcCceEEEEEeCCCCCCcCCcceEEEeeeeEEecCC
Confidence 999999999 56999999999973 433221 36789999999999754211110 011111 1
Q ss_pred cCccccc-ccCCCCCCceecCcchHHHHHHHHHHHHHHHHHHHHhhhcCCCCccccceeccCCchHHHHHHHHHhhhhhh
Q 012253 191 SHAYDFY-KPNLASEYPVVDGKLSQTCYLMALDSCYKYFCQKFEKLEGRQFSMLDVDYFVFHSPYNKLVQKSFARLFFND 269 (467)
Q Consensus 191 ~~~~df~-~p~~~~~~~~vdG~~s~~~y~~a~~~~~~~~~~~~~~~~~~~~~~~d~d~~i~H~p~~k~~~k~~~~l~~~~ 269 (467)
.+.+.+. ++. +.. ..+. +.....-.+.+..+.+.++ .+++++.+|+|+|++||++.++++.+.++|
T Consensus 251 ~~~~~~~i~~~-G~~-~~l~-~~vp~~~~~~~~~~i~~~L------~~~gl~~~di~~~v~Hqgg~~Il~~v~~~L---- 317 (391)
T PLN03173 251 DGAIDGHLREV-GLT-FHLL-KDVPGLISKNVEKSLTEAF------KPLGISDWNSLFWIAHPGGPAILDQVEAKL---- 317 (391)
T ss_pred ccceeeEEEcC-ceE-EEEe-cHHHHHHHHHHHHHHHHHH------HhcCCCccccCeEEECCCcHHHHHHHHHHc----
Confidence 1111111 111 100 0111 2221112222333333333 445788999999999999999999999888
Q ss_pred hccccCchhhHHhhhcCCCCCCCcchhhhhhhHHHHHHHHHHHHhhhhcCCCcccccccCccccchHHHHHHHHHhh---
Q 012253 270 FLRNASSVDEIAKEKLAPYSTLSDVESYQSRDLEKASQQVAKQLYDLKVQPSTLIPKQVGNMYTASLYAAFASLLHE--- 346 (467)
Q Consensus 270 ~~~~~~~~~~~~~~~l~~~~g~~~e~~~~~~~~~k~~~~~~~~~~~~~~~~s~~~~~~~GN~~taS~~l~L~~~l~~--- 346 (467)
|+++++. .+|+.+.+++|||+|+|++++|..++++
T Consensus 318 --------------------gL~~ekl----------------------~~s~~vl~~yGNtSSaSv~~vL~~~~~~~~~ 355 (391)
T PLN03173 318 --------------------ALKPEKL----------------------RATRHVLSEYGNMSSACVLFILDEMRKKSAE 355 (391)
T ss_pred --------------------CCChHHH----------------------HHHHHHHHHhCcchhhHHHHHHHHHHHhhhh
Confidence 7877753 2233344899999999999999999963
Q ss_pred cCcCC--CC-CEEEEEEeccccceeeEEEEEec
Q 012253 347 KHSSL--EG-KRVIMFSYGSGLTATMFSLQLQE 376 (467)
Q Consensus 347 ~~~~~--~G-~~ill~syGsG~~~~~~~~~~~~ 376 (467)
.+... +| ++++|++||+|+++++++++|..
T Consensus 356 ~~~~~~g~~~~~~l~~afGpG~t~e~~ll~~~~ 388 (391)
T PLN03173 356 DGLKSTGEGLEWGVLFGFGPGLTVETVVLHSVA 388 (391)
T ss_pred cCCCCCCCCcceEEEEEeCchHHHHHHHHhhcc
Confidence 12222 23 88999999999999999998854
|
|
| >PRK07515 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-36 Score=312.06 Aligned_cols=303 Identities=16% Similarity=0.129 Sum_probs=219.8
Q ss_pred eeEEeEEEEecCCceeehhHHhhhhCC------------------------CcCee--EEeccceEeeccC---------
Q 012253 8 NVGILALDIYFPPTCVLQEALEVHDGV------------------------SKGKY--TVGLGQDCMAFCS--------- 52 (467)
Q Consensus 8 ~vgI~ai~~y~P~~~v~~~el~~~~g~------------------------~~~k~--~~Gig~r~~av~~--------- 52 (467)
+|+|.+++.|+|++.|+|+|+++..+. +.+++ .+||..|+++...
T Consensus 2 ~~~I~~~g~~lP~~~v~n~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~Gi~~R~~~~~~~~~~~~~~~ 81 (372)
T PRK07515 2 NVVISGTGLYTPPESISNEELVASFNAYVERFNAENAAAIAAGEVEALQPSSSEFIEKASGIKSRYVMDKEGILDPDRMR 81 (372)
T ss_pred CcEEEEEEeecCCccccHHHHHHHHhhhhhhhcccchhhhccccccccCCCCHHHhhhccCCceEEEecccccCcccccC
Confidence 689999999999999999999876321 23344 3799888875321
Q ss_pred -------CC--CCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHhcccCCCCeeEEeeCCcChH
Q 012253 53 -------EV--EDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYG 123 (467)
Q Consensus 53 -------~~--Ed~~~ma~~Aa~~aL~~agi~~~~Id~Li~~Tes~~~~~ps~a~~v~~~Lgl~G~~~~~~~di~~aC~g 123 (467)
.. ....+|++.|+++||+++|+++++||.||++|.++.+..|+.+..|++.||+ + +.+++++.+|+|
T Consensus 82 ~~~~~r~~~~~~~~~~la~~Aa~~aL~~agl~~~~Id~li~~~~~~~~~~p~~a~~v~~~Lgl---~-~~~~~v~~aCas 157 (372)
T PRK07515 82 PRIPERSNDELSIQAEMGVAAARQALARAGRTAEDIDAVIVACSNMQRAYPAMAIEIQQALGI---E-GFAFDMNVACSS 157 (372)
T ss_pred cccccccccchhhHHHHHHHHHHHHHHHcCCCHHHCCEEEEECCCCCCCCcHHHHHHHHhcCC---C-CcEEEecchhHH
Confidence 01 1346899999999999999999999999999998888899999999999997 2 568999999999
Q ss_pred HHHHHHHHHHHHHhCCCCCCEEEEEEeecc-cccCC---CCCCccccceeEEEecCCCCce--eeccccccccc-Cccc-
Q 012253 124 GTAALFNCVNWVESASWDGRYGLVVCTDSA-VYAEG---PARPTGGAAAVAMLIGPDAPIA--FESKLRGSHMS-HAYD- 195 (467)
Q Consensus 124 g~~AL~~A~~~l~a~~~~~~~aLVV~sD~~-~y~~~---~~~~t~GdGAvA~Ll~~~~~~~--~~~~~~~~~~~-~~~d- 195 (467)
++.||..|.++|++|.. ++||||++|.+ .+.+. ....+|||||+|+||++.+.-. -.....++... +..+
T Consensus 158 g~~al~~A~~~i~~g~~--~~vLvv~~e~~s~~~~~~d~~~~~lfGDgAaA~vL~~~~~~~~~~~~~il~~~~~~~~~~~ 235 (372)
T PRK07515 158 ATFGIQTAANAIRSGSA--RRVLVVNPEICSGHLNFRDRDSHFIFGDVATAVIVERADTATSAGGFEILGTRLFTQFSNN 235 (372)
T ss_pred HHHHHHHHHHHHHcCCC--CEEEEEeeecccccccccCCCCCEEecCccEEEEEeeccccccCCCceEEEEEeecccccc
Confidence 99999999999999955 99999999997 33322 2346789999999999864210 00001111100 0001
Q ss_pred ------cc---ccC---CCCCCceecCcchHHHHHHHHHHHHHHHHHHHHhhhcCCCCccccceeccCCchHHHHHHHHH
Q 012253 196 ------FY---KPN---LASEYPVVDGKLSQTCYLMALDSCYKYFCQKFEKLEGRQFSMLDVDYFVFHSPYNKLVQKSFA 263 (467)
Q Consensus 196 ------f~---~p~---~~~~~~~vdG~~s~~~y~~a~~~~~~~~~~~~~~~~~~~~~~~d~d~~i~H~p~~k~~~k~~~ 263 (467)
+. .+. ....+..++|....+.+.+.+..+++..+ ++++++++|||+|++||++.+|.+.+.+
T Consensus 236 ~~~~~G~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~L------~~~gl~~~dId~~~~Hq~~~~~~d~~~~ 309 (372)
T PRK07515 236 IRNNFGFLNRADPEGIGARDKLFVQEGRKVFKEVCPMVAEHIVEHL------AENGLTPADVKRFWLHQANINMNQLIGK 309 (372)
T ss_pred eecCCCCCCCCCccccccccceEEeccHHHHHHHHHHHHHHHHHHH------HHcCCCHHHCCEEEECCCCHHHHHHHHH
Confidence 11 110 00112244666554434444444444333 4557999999999999999999999887
Q ss_pred hhhhhhhccccCchhhHHhhhcCCCCCC--CcchhhhhhhHHHHHHHHHHHHhhhhcCCCcccccccCccccchHHHHHH
Q 012253 264 RLFFNDFLRNASSVDEIAKEKLAPYSTL--SDVESYQSRDLEKASQQVAKQLYDLKVQPSTLIPKQVGNMYTASLYAAFA 341 (467)
Q Consensus 264 ~l~~~~~~~~~~~~~~~~~~~l~~~~g~--~~e~~~~~~~~~k~~~~~~~~~~~~~~~~s~~~~~~~GN~~taS~~l~L~ 341 (467)
+++ |+ +.++. ..+.+++|||+|||+|++|.
T Consensus 310 ~ll-----------------------g~~~~~~~~-------------------------~~~~~~~GNt~sasi~~~L~ 341 (372)
T PRK07515 310 KVL-----------------------GRDATPEEA-------------------------PVILDEYANTSSAGSIIAFH 341 (372)
T ss_pred Hhc-----------------------cCCCChhhc-------------------------eEeHHhcCCchhhHHHHHHH
Confidence 752 32 22221 12238999999999999999
Q ss_pred HHHhhcCcCCCCCEEEEEEeccccceeeEEEE
Q 012253 342 SLLHEKHSSLEGKRVIMFSYGSGLTATMFSLQ 373 (467)
Q Consensus 342 ~~l~~~~~~~~G~~ill~syGsG~~~~~~~~~ 373 (467)
.+++ ++++||+|+|++||+|+++++.+++
T Consensus 342 ~~~~---~~~~Gd~vll~~~G~G~~~~~~ll~ 370 (372)
T PRK07515 342 KHSD---DLAAGDLGVICSFGAGYSIGSVIVR 370 (372)
T ss_pred HHhc---cCCCCCEEEEEEecccHHHHHHHhc
Confidence 9853 4689999999999999999987765
|
|
| >PLN02377 3-ketoacyl-CoA synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-36 Score=312.87 Aligned_cols=317 Identities=17% Similarity=0.267 Sum_probs=224.0
Q ss_pred CCCceeEEeEEEEecCCc--eeehhHHhhhh---C-CCcCee--------EEeccceEeeccC------C-------CCC
Q 012253 4 WHPKNVGILALDIYFPPT--CVLQEALEVHD---G-VSKGKY--------TVGLGQDCMAFCS------E-------VED 56 (467)
Q Consensus 4 ~~~~~vgI~ai~~y~P~~--~v~~~el~~~~---g-~~~~k~--------~~Gig~r~~av~~------~-------~Ed 56 (467)
.||..|.+...++|.|+. +++.+.+.++. | .+++-+ +.|||++ ..+|+ + .|.
T Consensus 93 ~~~~~vylvd~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~ri~~~sgig~~-t~~p~~~~~~~~~~~~~~~~~e 171 (502)
T PLN02377 93 TRPRPVYLVDYSCYRAPDHLKAPFARFMEHSRLTGDFDDSSLEFQRKILERSGLGED-TYVPEAMHYIPPRPSMAAAREE 171 (502)
T ss_pred cCCCCEEEEeeeeecCCccccccHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCCc-cccCchhccCCccchHHHHHHH
Confidence 467889999999999975 68888777663 2 233221 4799884 33441 1 245
Q ss_pred HHHHHHHHHHHHHHHcCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHhcccCCCCeeEEeeC-CcChHHHHHHHHHHHHH
Q 012253 57 VISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDST-NACYGGTAALFNCVNWV 135 (467)
Q Consensus 57 ~~~ma~~Aa~~aL~~agi~~~~Id~Li~~Tes~~~~~ps~a~~v~~~Lgl~G~~~~~~~di~-~aC~gg~~AL~~A~~~l 135 (467)
+.+++..|+++||+++|++|+|||.||+ |+|++...|++++.|+++||+ .+++.+||++ .||+||+.||++|.+++
T Consensus 172 a~~l~~~A~~~aL~kaGi~p~dID~LVv-~cS~~~~~PSlaa~V~~~LGl--r~~v~afdL~gmGCsggl~aL~lA~~ll 248 (502)
T PLN02377 172 AEQVMFGALDNLFANTNVNPKDIGILVV-NCSLFNPTPSLSAMIVNKYKL--RGNIRSFNLGGMGCSAGVIAVDLAKDML 248 (502)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCCEEEE-ECCCCCCCCcHHHHHHHHhCC--CCCCeEEecccchhhHHHHHHHHHHHHH
Confidence 8999999999999999999999999988 899998899999999999998 6699999999 59999999999999999
Q ss_pred HhCCCCCCEEEEEEeecc-c-c--cCCCC----CCccccceeEEEecCCCCce----eec-cccccccc---Ccccc-cc
Q 012253 136 ESASWDGRYGLVVCTDSA-V-Y--AEGPA----RPTGGAAAVAMLIGPDAPIA----FES-KLRGSHMS---HAYDF-YK 198 (467)
Q Consensus 136 ~a~~~~~~~aLVV~sD~~-~-y--~~~~~----~~t~GdGAvA~Ll~~~~~~~----~~~-~~~~~~~~---~~~df-~~ 198 (467)
+++ ++++||||++|.. . + .+... ...|||||+|+||++.+.-. +.. +...++.. +.++. +.
T Consensus 249 ~~~--~~~~aLVVstE~~S~~~~~~d~~s~lv~n~LFgDGAaAvlLs~~~~~~~~a~~~l~~iv~t~~~~d~~~~~~i~~ 326 (502)
T PLN02377 249 QVH--RNTYAVVVSTENITQNWYFGNKKSMLIPNCLFRVGGSAVLLSNKSRDKRRSKYKLVHVVRTHRGADDKAFRCVYQ 326 (502)
T ss_pred HcC--CCCEEEEEEEeccccccCCCCCccccccceeeccccEEEEEecccccccccccccceEEEEEEEEcCCccceeee
Confidence 999 5599999999997 2 2 22212 26789999999999743100 000 11112211 11221 11
Q ss_pred c---CCCC------CCceecCc-----------chH----HHHHHHHHHHHHHHHHHHHhhhcCC-CCccccceeccCCc
Q 012253 199 P---NLAS------EYPVVDGK-----------LSQ----TCYLMALDSCYKYFCQKFEKLEGRQ-FSMLDVDYFVFHSP 253 (467)
Q Consensus 199 p---~~~~------~~~~vdG~-----------~s~----~~y~~a~~~~~~~~~~~~~~~~~~~-~~~~d~d~~i~H~p 253 (467)
| .++. +.+.+.|+ ... +.+..+.....+.+.+.+ +..+ ...+|||+||+||+
T Consensus 327 ~~d~~G~~g~~ls~dl~~v~g~~l~~~i~~lg~~vl~~se~~~~~a~~~~~~~~~~~l---~~~~p~~~~didhf~iHqg 403 (502)
T PLN02377 327 EQDDAGKTGVSLSKDLMAIAGEALKTNITTLGPLVLPISEQLLFFATLVVKKLFNKKM---KPYIPDFKLAFDHFCIHAG 403 (502)
T ss_pred ccccCCCCCCCCCcchhhHhhHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHH---hhccCCcHhhcCEEEECCC
Confidence 2 1111 12223322 110 111111111111122121 1111 34689999999999
Q ss_pred hHHHHHHHHHhhhhhhhccccCchhhHHhhhcCCCCCCCcchhhhhhhHHHHHHHHHHHHhhhhcCCCcccccccCcccc
Q 012253 254 YNKLVQKSFARLFFNDFLRNASSVDEIAKEKLAPYSTLSDVESYQSRDLEKASQQVAKQLYDLKVQPSTLIPKQVGNMYT 333 (467)
Q Consensus 254 ~~k~~~k~~~~l~~~~~~~~~~~~~~~~~~~l~~~~g~~~e~~~~~~~~~k~~~~~~~~~~~~~~~~s~~~~~~~GN~~t 333 (467)
+.++++.+.++| |+++++ +++...+ .+++|||+|
T Consensus 404 gr~IId~v~k~L------------------------gL~~~~------~e~sr~t----------------L~r~GNTSS 437 (502)
T PLN02377 404 GRAVIDELEKNL------------------------QLLPVH------VEASRMT----------------LHRFGNTSS 437 (502)
T ss_pred CHHHHHHHHHHc------------------------CCCccc------chHHHHH----------------HHhcCCchh
Confidence 999999999888 666532 1223333 389999999
Q ss_pred chHHHHHHHHHhhcCcCCCCCEEEEEEeccccceeeEEEEEec
Q 012253 334 ASLYAAFASLLHEKHSSLEGKRVIMFSYGSGLTATMFSLQLQE 376 (467)
Q Consensus 334 aS~~l~L~~~l~~~~~~~~G~~ill~syGsG~~~~~~~~~~~~ 376 (467)
+|+|+.|+.++++ +++++|++|++++||+|+++++.++++..
T Consensus 438 aSI~~aL~~~~~~-grik~Gd~VlliaFGsGf~~~s~v~~~~~ 479 (502)
T PLN02377 438 SSIWYELAYIEAK-GRMRKGNRVWQIAFGSGFKCNSAVWEALR 479 (502)
T ss_pred hHHHHHHHHHHHc-CCCCCCCeEEEEEEccccEeeeEEEEEec
Confidence 9999999999887 88999999999999999999999999876
|
|
| >PLN02854 3-ketoacyl-CoA synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-35 Score=306.27 Aligned_cols=315 Identities=18% Similarity=0.259 Sum_probs=221.9
Q ss_pred CCCceeEEeEEEEecCCc--eeehhHHhhhh---C-CCcCee--------EEeccceEeeccC------C-------CCC
Q 012253 4 WHPKNVGILALDIYFPPT--CVLQEALEVHD---G-VSKGKY--------TVGLGQDCMAFCS------E-------VED 56 (467)
Q Consensus 4 ~~~~~vgI~ai~~y~P~~--~v~~~el~~~~---g-~~~~k~--------~~Gig~r~~av~~------~-------~Ed 56 (467)
.||..|.+...++|-|+. +++.+.+.+.. | .+++.+ +.|+|++.+ +|+ + .+.
T Consensus 109 ~~~~~vylvd~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~sg~g~~ty-~P~~~~~~~~~~~~~~~r~e 187 (521)
T PLN02854 109 KRSKPVYLVDFACYKPEDERKISVDSFLTMTEENGSFEDETVQFQRRISTRSGLGDETY-LPRGITSRPPNLCMEEARAE 187 (521)
T ss_pred cCCCcEEEEeeeeecCCccccccHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCccc-cCccccCCCCcchHHHHHHH
Confidence 467889999999999975 68888776663 2 233321 479998754 322 1 133
Q ss_pred HHHHHHHHHHHHHHHcCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHhcccCCCCeeEEeeC-CcChHHHHHHHHHHHHH
Q 012253 57 VISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDST-NACYGGTAALFNCVNWV 135 (467)
Q Consensus 57 ~~~ma~~Aa~~aL~~agi~~~~Id~Li~~Tes~~~~~ps~a~~v~~~Lgl~G~~~~~~~di~-~aC~gg~~AL~~A~~~l 135 (467)
+....-.|+.+||+++|++|+|||.||+ ++|+++..|+++++|+++||+ .+++.+||++ .||+||+.||.+|.+++
T Consensus 188 a~~v~~~~~~~lL~kaGi~p~dID~LIv-~cS~~~p~PSlAa~I~n~LGl--r~~i~afdLsgmGCSggl~aL~lA~~lL 264 (521)
T PLN02854 188 AEAVMFGALDSLFSKTGVKPRDIGILIV-NCSLFNPTPSLSAMIVNHYKL--RTDIKSYNLGGMGCSAGLISIDLANDLL 264 (521)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCCEEEE-ECCCCCCCCCHHHHHHHHhCC--CCCceEEecccchhhhHHHHHHHHHHHH
Confidence 5566667899999999999999999998 488888899999999999998 5699999998 79999999999999999
Q ss_pred HhCCCCCCEEEEEEeeccc--ccCCCC------CCccccceeEEEecCCCCc------eeeccccccccc---Cccc-cc
Q 012253 136 ESASWDGRYGLVVCTDSAV--YAEGPA------RPTGGAAAVAMLIGPDAPI------AFESKLRGSHMS---HAYD-FY 197 (467)
Q Consensus 136 ~a~~~~~~~aLVV~sD~~~--y~~~~~------~~t~GdGAvA~Ll~~~~~~------~~~~~~~~~~~~---~~~d-f~ 197 (467)
+++ ++++||||++|... +..+++ ...|||||+|+||++.+.- .+. +...++.. +.++ .+
T Consensus 265 ~~~--~~~~aLVVstE~~S~~~y~g~Drs~lv~~~LFgDGAAAvlLs~~~~~~~~~k~~L~-~~v~t~~~ad~~~~~~i~ 341 (521)
T PLN02854 265 KAN--PNSYAVVVSTENITLNWYFGNDRSMLLCNCIFRMGGAAVLLSNKARDRKRSKYQLV-HTVRTHKGADDKNYNCVY 341 (521)
T ss_pred HhC--CCCeEEEEEEeeeecCCCCCCchhhhcceeeeccceeEEEEecccccccccchhee-eEEEEEEeeCCCccCeEE
Confidence 999 55999999999983 311122 3568999999999975410 110 01112211 1111 12
Q ss_pred ccC--CCC-------CC-----------ceecCcchHHHHHHHHHHHHHHHHHHHHhhhcCCCCc------cccceeccC
Q 012253 198 KPN--LAS-------EY-----------PVVDGKLSQTCYLMALDSCYKYFCQKFEKLEGRQFSM------LDVDYFVFH 251 (467)
Q Consensus 198 ~p~--~~~-------~~-----------~~vdG~~s~~~y~~a~~~~~~~~~~~~~~~~~~~~~~------~d~d~~i~H 251 (467)
.|. .|. +. ..+.|+..+. +.+.+.-......+++ .++++.. +||||||+|
T Consensus 342 ~~~d~~G~~g~~lsk~l~~va~~~l~~~i~~~g~~Vl~-~se~~~f~~~~i~~~L---~~~gl~~~~pd~~~didhf~iH 417 (521)
T PLN02854 342 QREDDKGTIGVSLARELMAVAGDALKTNITTLGPLVLP-LSEQFMFFVTLVRRKL---LKAKVKPYIPDFKLAFEHFCIH 417 (521)
T ss_pred eccCCCCcccccccccccchhhhhhhhhhhhccccccc-hHHHHHHHHHHHHHHH---HHcCCCccCCcccccCcEEEEC
Confidence 221 010 11 1123333211 1111110112222222 3345554 689999999
Q ss_pred CchHHHHHHHHHhhhhhhhccccCchhhHHhhhcCCCCCCCcchhhhhhhHHHHHHHHHHHHhhhhcCCCcccccccCcc
Q 012253 252 SPYNKLVQKSFARLFFNDFLRNASSVDEIAKEKLAPYSTLSDVESYQSRDLEKASQQVAKQLYDLKVQPSTLIPKQVGNM 331 (467)
Q Consensus 252 ~p~~k~~~k~~~~l~~~~~~~~~~~~~~~~~~~l~~~~g~~~e~~~~~~~~~k~~~~~~~~~~~~~~~~s~~~~~~~GN~ 331 (467)
|++.++++.+.++| |+++++ .+++.....++|||
T Consensus 418 qggr~IId~v~k~L------------------------gL~~~~----------------------~e~sr~tL~rfGNT 451 (521)
T PLN02854 418 AGGRAVLDELQKNL------------------------QLSDWH----------------------MEPSRMTLHRFGNT 451 (521)
T ss_pred CCCHHHHHHHHHHc------------------------CCCccc----------------------ccchHHHhhhcCCh
Confidence 99999999999988 665432 12233334899999
Q ss_pred ccchHHHHHHHHHhhcCcCCCCCEEEEEEeccccceeeEEEEEec
Q 012253 332 YTASLYAAFASLLHEKHSSLEGKRVIMFSYGSGLTATMFSLQLQE 376 (467)
Q Consensus 332 ~taS~~l~L~~~l~~~~~~~~G~~ill~syGsG~~~~~~~~~~~~ 376 (467)
+|+|+|+.|+.+.++ +++++||+|++++||+|++|++.+++|..
T Consensus 452 SSASI~~~L~~~~~k-Grik~GD~Vl~iaFGsGft~~sav~~~~~ 495 (521)
T PLN02854 452 SSSSLWYELAYTEAK-GRVSAGDRVWQIAFGSGFKCNSAVWKALR 495 (521)
T ss_pred HhhHHHHHHHHHHHc-CCCCCCCEEEEEEEchhhhhhheeeEEec
Confidence 999999999999887 88999999999999999999999999876
|
|
| >PLN02932 3-ketoacyl-CoA synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-35 Score=302.05 Aligned_cols=315 Identities=20% Similarity=0.286 Sum_probs=221.4
Q ss_pred CCCceeEEeEEEEecCCc--eeehhHHhhhh------C-CCcCe---e--------EEeccceEeeccCCC---------
Q 012253 4 WHPKNVGILALDIYFPPT--CVLQEALEVHD------G-VSKGK---Y--------TVGLGQDCMAFCSEV--------- 54 (467)
Q Consensus 4 ~~~~~vgI~ai~~y~P~~--~v~~~el~~~~------g-~~~~k---~--------~~Gig~r~~av~~~~--------- 54 (467)
.||..|.+...++|.|+. +++.+.+.++. | .+.+- + ++|||+|+. ++...
T Consensus 63 ~~~~~vyl~d~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~i~~rsGig~~t~-~p~~~~~~~~~~~~ 141 (478)
T PLN02932 63 TRPKPVYLVDFSCYLPPSHLKASIQTIMGHVRRVREAGAWKQESDYLMDFCEKILERSGLGQETY-IPEGLQCLPLQQNL 141 (478)
T ss_pred cCCCcEEEEeeeeecCcccccccHHHHHHHHHhhcccCCCCccchhHHHHHHHHHHHcCCCCcee-eccccccCCHHHHH
Confidence 468889999999999975 68888777653 2 22222 1 479999975 33221
Q ss_pred ----CCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHhcccCCCCeeEEeeC-CcChHHHHHHH
Q 012253 55 ----EDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDST-NACYGGTAALF 129 (467)
Q Consensus 55 ----Ed~~~ma~~Aa~~aL~~agi~~~~Id~Li~~Tes~~~~~ps~a~~v~~~Lgl~G~~~~~~~di~-~aC~gg~~AL~ 129 (467)
+.+.+|+.+|+++||+++|++|+|||.||++|+|+. ..|++++.|+++||+ ++++.+||++ .||+||+.||.
T Consensus 142 ~~~~~ea~~la~~Aa~~aL~~agi~p~dId~lIv~tst~~-~~Pslaa~V~~~lGl--r~~i~~fdL~gmGCSggl~aL~ 218 (478)
T PLN02932 142 AVSRKETEEVIIGAVDNLFRNTGISPSDIGILVVNSSTFN-PTPSLSSILVNKFKL--RDNIKSLNLGGMGCSAGVIAID 218 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEEccCCC-CCCcHHHHHHHHhCC--CCCceEEEeccchhhhHHHHHH
Confidence 248899999999999999999999999999999986 799999999999998 6799999999 79999999999
Q ss_pred HHHHHHHhCCCCCCEEEEEEeecc-ccc-CCC------CCCccccceeEEEecCCCC------ceeecccccccccC---
Q 012253 130 NCVNWVESASWDGRYGLVVCTDSA-VYA-EGP------ARPTGGAAAVAMLIGPDAP------IAFESKLRGSHMSH--- 192 (467)
Q Consensus 130 ~A~~~l~a~~~~~~~aLVV~sD~~-~y~-~~~------~~~t~GdGAvA~Ll~~~~~------~~~~~~~~~~~~~~--- 192 (467)
+|.++++++ ++++||||++|.. ..- .++ ....|||||+|+||++.+. ..+.. ...++...
T Consensus 219 lA~~ll~~~--~~~~aLVVstE~~S~~~~~~d~r~~l~t~~LFgDGAAAvlLs~~~~~~~~~~~~L~~-~v~t~~~ad~~ 295 (478)
T PLN02932 219 AAKSLLQVH--RNTYALVVSTENITQNLYLGNNKSMLVTNCLFRIGGAAILLSNRSRDRKRAKYELVH-TVRVHTGADDR 295 (478)
T ss_pred HHHHHHHcC--CCCeEEEEEEeecccccCCCcchhhhccceeecccceEEEEecccccccCcceEEEe-eeeeeeccCCC
Confidence 999999999 5599999999997 221 112 2467899999999998641 11211 11222111
Q ss_pred ccc-ccccC--CC------C-CCcee-----------cCcchH---HHHHHHHHHHHHHHHHHHHhhhcCCCC---cccc
Q 012253 193 AYD-FYKPN--LA------S-EYPVV-----------DGKLSQ---TCYLMALDSCYKYFCQKFEKLEGRQFS---MLDV 245 (467)
Q Consensus 193 ~~d-f~~p~--~~------~-~~~~v-----------dG~~s~---~~y~~a~~~~~~~~~~~~~~~~~~~~~---~~d~ 245 (467)
.++ .+.+. .| + +.|.+ +|.... +.+..++....+.+.+.. ..+.. .++|
T Consensus 296 ~~~~v~~~~d~~G~~g~~Lsk~lp~~~~~al~~ni~~~~p~v~p~~e~~~~~~~~~~~~~~k~~----~~~~~~~~~~~i 371 (478)
T PLN02932 296 SYECATQEEDEDGIVGVSLSKNLPMVAARTLKINIATLGPLVLPLSEKFHFFVRFVKKKFFNPK----LKHYIPDFKLAF 371 (478)
T ss_pred ccccceeecccCCcceeeECccchHHHHHHHhhhhhccccccccchhhhHHHHHHhHHHHHHHH----hhcCcHhHHhhh
Confidence 111 11221 00 0 11111 111110 111111211111111110 01122 2689
Q ss_pred ceeccCCchHHHHHHHHHhhhhhhhccccCchhhHHhhhcCCCCCCCcchhhhhhhHHHHHHHHHHHHhhhhcCCCcccc
Q 012253 246 DYFVFHSPYNKLVQKSFARLFFNDFLRNASSVDEIAKEKLAPYSTLSDVESYQSRDLEKASQQVAKQLYDLKVQPSTLIP 325 (467)
Q Consensus 246 d~~i~H~p~~k~~~k~~~~l~~~~~~~~~~~~~~~~~~~l~~~~g~~~e~~~~~~~~~k~~~~~~~~~~~~~~~~s~~~~ 325 (467)
|+||+||++.++++.+.++| |+++++ +|+..+++
T Consensus 372 d~f~iHqggr~IIdav~k~L------------------------gL~~~~------~e~s~~tL---------------- 405 (478)
T PLN02932 372 EHFCIHAGGRALIDEMEKNL------------------------HLTPLD------VEASRMTL---------------- 405 (478)
T ss_pred ceEEEccCCHHHHHHHHHHc------------------------CCChHH------HHHHHHHH----------------
Confidence 99999999999999999988 676642 23333344
Q ss_pred cccCccccchHHHHHHHHHhhcCcCCCCCEEEEEEeccccceeeEEEEEec
Q 012253 326 KQVGNMYTASLYAAFASLLHEKHSSLEGKRVIMFSYGSGLTATMFSLQLQE 376 (467)
Q Consensus 326 ~~~GN~~taS~~l~L~~~l~~~~~~~~G~~ill~syGsG~~~~~~~~~~~~ 376 (467)
+++|||+|+|+|+.|+.+..+ +++++||+|++++||+|++++..+++.-.
T Consensus 406 ~rfGNTSSaSI~~~L~~~ea~-grik~Gd~vl~iaFGsGf~~~s~vw~~~~ 455 (478)
T PLN02932 406 HRFGNTSSSSIWYELAYTEAK-GRMKKGDRIWQIALGSGFKCNSSVWVALR 455 (478)
T ss_pred HHhCChhhhHHHHHHHHHHHc-CCCCCCCEEEEEEEeccHHHHHHHHHHhc
Confidence 899999999999999999877 78899999999999999999988866543
|
|
| >PLN02192 3-ketoacyl-CoA synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-34 Score=298.09 Aligned_cols=303 Identities=17% Similarity=0.253 Sum_probs=217.1
Q ss_pred CCCceeEEeEEEEecCCc--eeehhHHhhhh---C-CCcCee--------EEeccceEeeccC------C-------CCC
Q 012253 4 WHPKNVGILALDIYFPPT--CVLQEALEVHD---G-VSKGKY--------TVGLGQDCMAFCS------E-------VED 56 (467)
Q Consensus 4 ~~~~~vgI~ai~~y~P~~--~v~~~el~~~~---g-~~~~k~--------~~Gig~r~~av~~------~-------~Ed 56 (467)
.||..|.+...++|.|+. +++.+.+.+.. | .+++-+ +.|+|++.+ +|+ + .+.
T Consensus 97 ~~~~~vylvd~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~sglg~~t~-~p~~~~~~~~~~~~~~~~~E 175 (511)
T PLN02192 97 TRPRPVYLVDFSCYKPDDSRKCTRKIFMDRSKLTGSFTEENLEFQRKILERSGLGESTY-LPEAVLNVPPNPCMAEARKE 175 (511)
T ss_pred cCCCcEEEEeeeeecCCccccccHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCccc-CChhhccCCCCccHHHHHHH
Confidence 467889999999999976 68888777663 2 233321 479998754 321 1 234
Q ss_pred HHHHHHHHHHHHHHHcCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHhcccCCCCeeEEeeC-CcChHHHHHHHHHHHHH
Q 012253 57 VISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDST-NACYGGTAALFNCVNWV 135 (467)
Q Consensus 57 ~~~ma~~Aa~~aL~~agi~~~~Id~Li~~Tes~~~~~ps~a~~v~~~Lgl~G~~~~~~~di~-~aC~gg~~AL~~A~~~l 135 (467)
+..+...|+++||+++|++|+|||.||++ +|++...|++++.|+++||+ .+++.+||++ .||+||+.||++|.+++
T Consensus 176 a~~~~~~Aa~~aL~kaGi~p~DIDiLIv~-~S~~~~~PSlaa~I~n~lGl--r~~i~afdLsgmGCSggl~aLdlA~~lL 252 (511)
T PLN02192 176 AETVMFGAIDQLLAKTSVKPKDIGILIVN-CSLFNPTPSLSAMVINHYKL--RGNILSYNLGGMGCSAGLISIDLAKHLL 252 (511)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCCEEEEE-CCCCCCCchHHHHHHHHhCC--CCCceEEEcccchhhhHHHHHHHHHHHH
Confidence 78889999999999999999999999987 56778899999999999998 5689999999 59999999999999999
Q ss_pred HhCCCCCCEEEEEEeeccc--ccCCCCC------CccccceeEEEecCCCC------ceeecccccccccCcccc----c
Q 012253 136 ESASWDGRYGLVVCTDSAV--YAEGPAR------PTGGAAAVAMLIGPDAP------IAFESKLRGSHMSHAYDF----Y 197 (467)
Q Consensus 136 ~a~~~~~~~aLVV~sD~~~--y~~~~~~------~t~GdGAvA~Ll~~~~~------~~~~~~~~~~~~~~~~df----~ 197 (467)
+++ ++++||||++|... +..++++ ..|||||+|+||++.+. ..+.. ...++.....+. +
T Consensus 253 ~a~--~~~~aLVVstE~~S~n~y~g~drs~lv~n~LFgDGAaAvLLs~~~~~~~~~k~~L~~-~vrt~~~~dd~~~~~v~ 329 (511)
T PLN02192 253 QVH--PNSYALVISMENITLNWYFGNDRSMLVSNCLFRMGGAAILLSNKRSDRRRSKYQLVH-TVRTHKGADDKCFACVT 329 (511)
T ss_pred HcC--CCCeEEEEEEEeccccCCCCCCHHHHhccccccccceEEEEeccccccccccceeee-eEEEEecCChhhcccee
Confidence 999 55999999999984 2112222 56899999999998431 11110 011221111111 1
Q ss_pred ccCCC---------CCCc-----------------------------eecCcchHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 012253 198 KPNLA---------SEYP-----------------------------VVDGKLSQTCYLMALDSCYKYFCQKFEKLEGRQ 239 (467)
Q Consensus 198 ~p~~~---------~~~~-----------------------------~vdG~~s~~~y~~a~~~~~~~~~~~~~~~~~~~ 239 (467)
.|... .+.+ .++|+.. |..+++. +...
T Consensus 330 ~~ed~~g~~g~~Lskdl~~vag~al~~ni~~l~p~vlp~~e~~~~~~~m~gr~v---fk~~~~~----~~p~-------- 394 (511)
T PLN02192 330 QEEDSAGKIGVSLSKDLMAVAGDALKTNITTLGPLVLPMSEQLLFFATLVGKKL---FKMKLKP----YIPD-------- 394 (511)
T ss_pred cccccccceeeEecchhhhhhhhhhhhhhhhcccccCccchhhceeEEEcChHH---HHHHhhh----ccHH--------
Confidence 11000 0000 0111111 1111111 1110
Q ss_pred CCccccceeccCCchHHHHHHHHHhhhhhhhccccCchhhHHhhhcCCCCCCCcchhhhhhhHHHHHHHHHHHHhhhhcC
Q 012253 240 FSMLDVDYFVFHSPYNKLVQKSFARLFFNDFLRNASSVDEIAKEKLAPYSTLSDVESYQSRDLEKASQQVAKQLYDLKVQ 319 (467)
Q Consensus 240 ~~~~d~d~~i~H~p~~k~~~k~~~~l~~~~~~~~~~~~~~~~~~~l~~~~g~~~e~~~~~~~~~k~~~~~~~~~~~~~~~ 319 (467)
...+||+||+||++.++++.+.++| |+++++ +|+...++
T Consensus 395 -~~~~Idhf~iHqggr~IId~v~k~L------------------------gL~~~~------~e~sr~tL---------- 433 (511)
T PLN02192 395 -FKLAFEHFCIHAGGRAVLDELEKNL------------------------QLSDWH------MEPSRMTL---------- 433 (511)
T ss_pred -HHHhhceEeeccCCHHHHHHHHHHc------------------------CCCchh------hhHHHHHH----------
Confidence 1247999999999999999999988 565531 22333333
Q ss_pred CCcccccccCccccchHHHHHHHHHhhcCcCCCCCEEEEEEeccccceeeEEEEEec
Q 012253 320 PSTLIPKQVGNMYTASLYAAFASLLHEKHSSLEGKRVIMFSYGSGLTATMFSLQLQE 376 (467)
Q Consensus 320 ~s~~~~~~~GN~~taS~~l~L~~~l~~~~~~~~G~~ill~syGsG~~~~~~~~~~~~ 376 (467)
.++|||+|+|+|+.|+.+.++ +++++||+|++++||+|+++++.+++|..
T Consensus 434 ------~rfGNTSSaSI~~aL~~~eak-grik~GDrVl~iaFGsGf~~~sav~~~~~ 483 (511)
T PLN02192 434 ------YRFGNTSSSSLWYELAYSEAK-GRIKKGDRTWQIAFGSGFKCNSAVWKALR 483 (511)
T ss_pred ------hHcCChHHhHHHHHHHHHHHc-CCCCCCCEEEEEEEcchHhhhhhheeeec
Confidence 899999999999999999887 88999999999999999999999999876
|
|
| >COG3424 BcsA Predicted naringenin-chalcone synthase [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-33 Score=263.74 Aligned_cols=306 Identities=17% Similarity=0.219 Sum_probs=227.1
Q ss_pred EEeEEEEecCCceeehhHHhhhh----CCCc-Ce----eE--EeccceEeeccCC---------------CCCHHHHHHH
Q 012253 10 GILALDIYFPPTCVLQEALEVHD----GVSK-GK----YT--VGLGQDCMAFCSE---------------VEDVISMSLT 63 (467)
Q Consensus 10 gI~ai~~y~P~~~v~~~el~~~~----g~~~-~k----~~--~Gig~r~~av~~~---------------~Ed~~~ma~~ 63 (467)
-|.+++.++|++.++|.|+...+ ..+. +. |. .+|..|+...|.+ -|.++.++++
T Consensus 3 ~i~sv~t~~Ppy~~~Qse~~d~f~~~~~~~~~~~I~r~l~~~~~i~~R~~v~Pl~~y~e~~~f~ekN~ifie~a~~l~v~ 82 (356)
T COG3424 3 VIASVATALPPYRYNQSEITDSFAELPFQEGREDIPRVLHANAQINRRHLVLPLDWYREPHGFGEKNEIFIEEAVPLGVD 82 (356)
T ss_pred eeeecccCCCccccchHHHHHHHHHhccccchHHHHHHHhhccccccceecccHhhccCCCChhhhhhhHHHHHHHHHHH
Confidence 58999999999999997766543 1111 11 11 2445454433221 1568999999
Q ss_pred HHHHHHHHcCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHhcccCCCCeeEEeeCC-cChHHHHHHHHHHHHHHhCCCCC
Q 012253 64 VVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTN-ACYGGTAALFNCVNWVESASWDG 142 (467)
Q Consensus 64 Aa~~aL~~agi~~~~Id~Li~~Tes~~~~~ps~a~~v~~~Lgl~G~~~~~~~di~~-aC~gg~~AL~~A~~~l~a~~~~~ 142 (467)
|+++||+..++.|+|||+|+++|+|+.- .|++.++|+++||+ ++++..+.+.. ||++|.+||..|.+|++++ |.
T Consensus 83 a~r~aL~~~~l~pedId~vv~vtsTG~~-~Ps~dari~~~Lgl--~p~~~Rvpv~glGCaaga~glara~~y~ra~--P~ 157 (356)
T COG3424 83 ALRRALDGSPLRPEDIDAVVTVTSTGLA-TPSLDARIVGELGL--SPDTRRVPVWGLGCAAGAAGLARARDYCRAA--PD 157 (356)
T ss_pred HHHHHhccCCCCHHHCcEEEEEeecccc-CCChhHHHHhhcCC--CCccceeeeecchhhhhhhHHHHHHHHHhhC--cc
Confidence 9999999999999999999999999984 89999999999999 79999999975 9999999999999999999 67
Q ss_pred CEEEEEEeecc--cccCC--C-----CCCccccceeEEEecCCCCc----eeecccccccccCccc------ccccCCCC
Q 012253 143 RYGLVVCTDSA--VYAEG--P-----ARPTGGAAAVAMLIGPDAPI----AFESKLRGSHMSHAYD------FYKPNLAS 203 (467)
Q Consensus 143 ~~aLVV~sD~~--~y~~~--~-----~~~t~GdGAvA~Ll~~~~~~----~~~~~~~~~~~~~~~d------f~~p~~~~ 203 (467)
.+|||||.|.| .|... + +...||||++|+|++.+.+. ...+.+.++.+.-..| |-.. ..
T Consensus 158 ~~vlvV~vELCSLt~~~~d~t~s~lVgtaLF~DG~AA~vv~gd~~~~~~~~~~p~i~~s~StL~~dse~~Mgwdv~--d~ 235 (356)
T COG3424 158 ANVLVVCVELCSLTYVFADDTKSNLVGTALFGDGAAAVVVSGDRRAEGKRPLRPDILDSFSTLYPDSEDIMGWDVG--DQ 235 (356)
T ss_pred ceEEEEEeeeeeeeeecCCCCcccceeeeeecCCeeEEEEeccccccccCCCCceecccccccCCccccccceeec--CC
Confidence 99999999999 33322 1 13578999999999987541 1122233333332111 1111 11
Q ss_pred CCceecCcchHHHHHHHHHHHHHHHHHHHHhhhcCCCCccccceeccCCchHHHHHHHHHhhhhhhhccccCchhhHHhh
Q 012253 204 EYPVVDGKLSQTCYLMALDSCYKYFCQKFEKLEGRQFSMLDVDYFVFHSPYNKLVQKSFARLFFNDFLRNASSVDEIAKE 283 (467)
Q Consensus 204 ~~~~vdG~~s~~~y~~a~~~~~~~~~~~~~~~~~~~~~~~d~d~~i~H~p~~k~~~k~~~~l~~~~~~~~~~~~~~~~~~ 283 (467)
.+..+-.+.....-...+......++. .++++.+||+.|+.|...+|++++..+.|
T Consensus 236 G~~~vlSrdlp~lIe~~l~~~V~~fL~------~~~ls~~dI~~w~~HPGG~KVida~~~sL------------------ 291 (356)
T COG3424 236 GLKVVLSRDLPNLIESYLAPNVTTFLA------THGLSIEDIEAWVVHPGGPKVIDAYEESL------------------ 291 (356)
T ss_pred cEEEEEcCchhHHHHHHhhhhHHHHHH------HcCCchhhhceeeeCCCCchHHHHHHHhc------------------
Confidence 122232222212122234444455544 34799999999999999999999998888
Q ss_pred hcCCCCCCCcchhhhhhhHHHHHHHHHHHHhhhhcCCCcccccccCccccchHHHHHHHHHhhcCcCCCCCEEEEEEecc
Q 012253 284 KLAPYSTLSDVESYQSRDLEKASQQVAKQLYDLKVQPSTLIPKQVGNMYTASLYAAFASLLHEKHSSLEGKRVIMFSYGS 363 (467)
Q Consensus 284 ~l~~~~g~~~e~~~~~~~~~k~~~~~~~~~~~~~~~~s~~~~~~~GN~~taS~~l~L~~~l~~~~~~~~G~~ill~syGs 363 (467)
|++++.. +.|+...+++|||+|||++..|...+++. .++|.+.+|+++|.
T Consensus 292 ------gls~e~l----------------------~~s~~~L~~~GNMSSatvLfVL~d~l~~~--~~~g~~Gl~~A~GP 341 (356)
T COG3424 292 ------GLSPEAL----------------------ELSWDVLREYGNMSSATVLFVLEDTLQKA--PKSGSRGLMFAMGP 341 (356)
T ss_pred ------CCCHHHH----------------------HHHHHHHHHhCCccchhhHHHHHHHHHhc--CCCCcceeeeecCC
Confidence 7777632 34556679999999999999999999983 57999999999999
Q ss_pred ccceeeEEEEEec
Q 012253 364 GLTATMFSLQLQE 376 (467)
Q Consensus 364 G~~~~~~~~~~~~ 376 (467)
|++++..+++|..
T Consensus 342 Gf~sElvL~~w~~ 354 (356)
T COG3424 342 GFCSELVLLDWEG 354 (356)
T ss_pred cceeeeeeEEeec
Confidence 9999999999975
|
|
| >PLN00415 3-ketoacyl-CoA synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-32 Score=279.79 Aligned_cols=320 Identities=18% Similarity=0.253 Sum_probs=216.9
Q ss_pred CCCceeEEeEEEEecCCc--eeehhHHhhhh---C-CCcCee--------EEeccceEee---------ccC--CCCCHH
Q 012253 4 WHPKNVGILALDIYFPPT--CVLQEALEVHD---G-VSKGKY--------TVGLGQDCMA---------FCS--EVEDVI 58 (467)
Q Consensus 4 ~~~~~vgI~ai~~y~P~~--~v~~~el~~~~---g-~~~~k~--------~~Gig~r~~a---------v~~--~~Ed~~ 58 (467)
.||..|.+...++|-|+. +++.+.+.+.. | .+++-+ +.|||++.+. .+. +.....
T Consensus 55 ~~~~~vylvd~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~s~~F~~~i~~rSGlg~et~~p~~~~~~~~~~~~~~~~~e~ 134 (466)
T PLN00415 55 TRSKPVYLVDFSCHQPTDSCKISSETFFNMAKGAQLYTEETIQFMTRILNRSGLGDDTYSPRCMLTSPPTPSMYEARHES 134 (466)
T ss_pred cCCCcEEEEeeeeecCCccccccHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCCeeeCCccccCCCCCChhhhHHHH
Confidence 467889999999999865 67777766552 2 222211 2466654321 111 234467
Q ss_pred HHHHH-HHHHHHHHcCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHhcccCCCCeeEEeeCC-cChHHHHHHHHHHHHHH
Q 012253 59 SMSLT-VVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTN-ACYGGTAALFNCVNWVE 136 (467)
Q Consensus 59 ~ma~~-Aa~~aL~~agi~~~~Id~Li~~Tes~~~~~ps~a~~v~~~Lgl~G~~~~~~~di~~-aC~gg~~AL~~A~~~l~ 136 (467)
+|++. |+++||+++|++|+|||.||+ ++|+....|+.++.|+++||+ .+++.+||+++ ||+||+.||.+|.++++
T Consensus 135 em~i~~A~~~aL~~aGi~p~dID~LIv-s~T~~~~~Pslaa~l~~~LGL--r~~v~~~dL~gmGCsggv~aL~lA~~ll~ 211 (466)
T PLN00415 135 ELVIFGALNSLFKKTGIEPREVGIFIV-NCSLFNPNPSLSSMIVNRYKL--KTDVKTYNLSGMGCSAGAISVDLATNLLK 211 (466)
T ss_pred HHHHHHHHHHHHHHcCCCHHHCCEEEE-ECcCCCCCchHHHHHHHHhCC--CCCceEEEeccccchHHHHHHHHHHHHHH
Confidence 77777 777889999999999999985 678887799999999999998 67999999997 99999999999999999
Q ss_pred hCCCCCCEEEEEEeecc--cccCCCC------CCccccceeEEEecCCCCc----eeec-ccccccccCcccccc-----
Q 012253 137 SASWDGRYGLVVCTDSA--VYAEGPA------RPTGGAAAVAMLIGPDAPI----AFES-KLRGSHMSHAYDFYK----- 198 (467)
Q Consensus 137 a~~~~~~~aLVV~sD~~--~y~~~~~------~~t~GdGAvA~Ll~~~~~~----~~~~-~~~~~~~~~~~df~~----- 198 (467)
++ ++++||||++|.+ .+.++++ ...|||||+|+||++++.. .++. ....+++.+..+-+.
T Consensus 212 a~--~~~~aLVVs~E~~S~~~~~~~dr~~lv~n~LFgDGAAAvlLs~~~~~~~~~~~~L~~~vrt~~~~~d~~~~~~~~~ 289 (466)
T PLN00415 212 AN--PNTYAVIVSTENMTLSMYRGNDRSMLVPNCLFRVGGAAVMLSNRSQDRVRSKYELTHIVRTHKGSSDKHYTCAEQK 289 (466)
T ss_pred hC--CCCEEEEEEEecccccccCCCcHhHhccceeecccceEEEEecCcccccCccceeeeEEEecCCCChhhhcceeee
Confidence 99 6699999999997 2213322 2578999999999986421 1110 122233322222222
Q ss_pred cCCCCCCc-eecCcchHHHHHHHHHHHHHHHHHHH--------------H-hhhcCCCC--ccc----cceeccCCchHH
Q 012253 199 PNLASEYP-VVDGKLSQTCYLMALDSCYKYFCQKF--------------E-KLEGRQFS--MLD----VDYFVFHSPYNK 256 (467)
Q Consensus 199 p~~~~~~~-~vdG~~s~~~y~~a~~~~~~~~~~~~--------------~-~~~~~~~~--~~d----~d~~i~H~p~~k 256 (467)
-+ ...+. ..-.+.....-.+++......+.... . +....... ..| +++||+|+++.+
T Consensus 290 ~d-~~G~~gv~Lsk~lp~va~~~l~~ni~~l~p~vlp~~e~~~~~~~~i~~~~~~~~~~~~~pd~~~~~~hf~iHpGGra 368 (466)
T PLN00415 290 ED-SKGIVGVALSKELTVVAGDTLKTNLTALGPLVLPLSEKLRFILFLVKSKLFRLKVSPYVPDFKLCFKHFCIHAGGRA 368 (466)
T ss_pred ec-CCCcceEEEChHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHhhhhhhccCCCCCCCccccceeEEecCCcHH
Confidence 11 00110 01111111222222222222211110 0 00000111 123 789999999999
Q ss_pred HHHHHHHhhhhhhhccccCchhhHHhhhcCCCCCCCcchhhhhhhHHHHHHHHHHHHhhhhcCCCcccccccCccccchH
Q 012253 257 LVQKSFARLFFNDFLRNASSVDEIAKEKLAPYSTLSDVESYQSRDLEKASQQVAKQLYDLKVQPSTLIPKQVGNMYTASL 336 (467)
Q Consensus 257 ~~~k~~~~l~~~~~~~~~~~~~~~~~~~l~~~~g~~~e~~~~~~~~~k~~~~~~~~~~~~~~~~s~~~~~~~GN~~taS~ 336 (467)
+++.+.+.| +++++ ++++|+.+.+++|||+|+|+
T Consensus 369 VLdave~~L------------------------gL~~~----------------------~le~Sr~vL~r~GN~SSsSV 402 (466)
T PLN00415 369 LLDAVEKGL------------------------GLSEF----------------------DLEPSRMTLHRFGNTSSSSL 402 (466)
T ss_pred HHHHHHHHc------------------------CCCHH----------------------HHHHHHHHHHHhCCchhhhH
Confidence 999998888 56554 33566777799999999999
Q ss_pred HHHHHHHHhhcCcCCCCCEEEEEEeccccceeeEEEEEec
Q 012253 337 YAAFASLLHEKHSSLEGKRVIMFSYGSGLTATMFSLQLQE 376 (467)
Q Consensus 337 ~l~L~~~l~~~~~~~~G~~ill~syGsG~~~~~~~~~~~~ 376 (467)
+..|..+..+ ++.++|+++++++||+|++++..++++-.
T Consensus 403 ~yvL~~~~~~-~~~~~Gdrvl~iaFGpGf~~es~v~~~~~ 441 (466)
T PLN00415 403 WYELAYVEAK-CRVKRGDRVWQLAFGSGFKCNSIVWRALR 441 (466)
T ss_pred HHHHHHHHhh-ccCCCCCEEEEEEEcCcchhhHhHHHHhc
Confidence 9999999876 67789999999999999999999988765
|
|
| >cd00327 cond_enzymes Condensing enzymes; Family of enzymes that catalyze a (decarboxylating or non-decarboxylating) Claisen-like condensation reaction | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.8e-26 Score=223.96 Aligned_cols=236 Identities=14% Similarity=0.089 Sum_probs=177.3
Q ss_pred HHHHHHHHHHHHHHHcCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHhcccCCCCeeEEeeCCcChHHHHHHHHHHHHHH
Q 012253 57 VISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAALFNCVNWVE 136 (467)
Q Consensus 57 ~~~ma~~Aa~~aL~~agi~~~~Id~Li~~Tes~~~~~ps~a~~v~~~Lgl~G~~~~~~~di~~aC~gg~~AL~~A~~~l~ 136 (467)
..+|+.+|++++|+++|++++|||.|+++|+++....|+.+.+|+..||+ ++..++++.++|++++.||..|.++|+
T Consensus 7 ~~~l~~~A~~~al~~ag~~~~~i~~li~~~~~~~~~~~~~a~~i~~~lg~---~~~~~~~i~~~C~s~~~al~~A~~~i~ 83 (254)
T cd00327 7 ASELGFEAAEQAIADAGLSKGPIVGVIVGTTGGSGEFSGAAGQLAYHLGI---SGGPAYSVNQACATGLTALALAVQQVQ 83 (254)
T ss_pred HHHHHHHHHHHHHHHcCCCCCCceEEEEEECCCCccccHHHHHHHHHhCC---CCCCcceeccHhHHHHHHHHHHHHHHH
Confidence 78999999999999999999999999999999987789999999999998 378899999999999999999999999
Q ss_pred hCCCCCCEEEEEEeecccccCCCCCCccccceeEEEecCCCCc-ee----ecccccccccCcccccccCCCCCCceecCc
Q 012253 137 SASWDGRYGLVVCTDSAVYAEGPARPTGGAAAVAMLIGPDAPI-AF----ESKLRGSHMSHAYDFYKPNLASEYPVVDGK 211 (467)
Q Consensus 137 a~~~~~~~aLVV~sD~~~y~~~~~~~t~GdGAvA~Ll~~~~~~-~~----~~~~~~~~~~~~~df~~p~~~~~~~~vdG~ 211 (467)
+|.. +++||+++|. ..+||||+|+||++.+.. .. .....+.........+. + .
T Consensus 84 ~g~~--~~~lv~~~e~---------~~~gdGAaa~vL~~~~~a~~~~~~~~~~i~~~~~~~~~~~~~-------~----~ 141 (254)
T cd00327 84 NGKA--DIVLAGGSEE---------FVFGDGAAAAVVESEEHALRRGAHPQAEIVSTAATFDGASMV-------P----A 141 (254)
T ss_pred CCCC--CEEEEEecce---------eeecceEEEEEECcHHHHHHCCCceEEEEEEEEEcCCCCCCC-------C----C
Confidence 9965 9999999998 678999999999986420 00 00011111111000000 0 0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhhhcCCCCccccceeccCCchHHHHHHHHHhhhhhhhccccCchhhHHhhhcCCCCCC
Q 012253 212 LSQTCYLMALDSCYKYFCQKFEKLEGRQFSMLDVDYFVFHSPYNKLVQKSFARLFFNDFLRNASSVDEIAKEKLAPYSTL 291 (467)
Q Consensus 212 ~s~~~y~~a~~~~~~~~~~~~~~~~~~~~~~~d~d~~i~H~p~~k~~~k~~~~l~~~~~~~~~~~~~~~~~~~l~~~~g~ 291 (467)
. +.+.+.++.+.++++ +++.++|+|++++|+++.++.....+.+.+..
T Consensus 142 ~----~~~~~~~~i~~~l~~------ag~~~~did~~~~h~~~~~~~~~~~~~~~~~~---------------------- 189 (254)
T cd00327 142 V----SGEGLARAARKALEG------AGLTPSDIDYVEAHGTGTPIGDAVELALGLDP---------------------- 189 (254)
T ss_pred C----ChHHHHHHHHHHHHH------cCCCHHHCCEEEccCCcCccccHHHHHHHHHH----------------------
Confidence 1 233344454444443 46889999999999999999988877763211
Q ss_pred CcchhhhhhhHHHHHHHHHHHHhhhhcCCCcccccccCccccchHHHHHHHHHhhcCcCC-------CCCEEEEEEeccc
Q 012253 292 SDVESYQSRDLEKASQQVAKQLYDLKVQPSTLIPKQVGNMYTASLYAAFASLLHEKHSSL-------EGKRVIMFSYGSG 364 (467)
Q Consensus 292 ~~e~~~~~~~~~k~~~~~~~~~~~~~~~~s~~~~~~~GN~~taS~~l~L~~~l~~~~~~~-------~G~~ill~syGsG 364 (467)
++. +--+......++||+++||.++.|..+++. .+.. +|++++++++|.|
T Consensus 190 --~~~--------------------~~~~~~~~~~~~G~~~~as~~~~l~~~~~~-~~~~~~~~~~~~~~~~l~~~~g~G 246 (254)
T cd00327 190 --DGV--------------------RSPAVSATLIMTGHPLGAAGLAILDELLLM-LEHEFIPPTPREPRTVLLLGFGLG 246 (254)
T ss_pred --hCC--------------------CCCceeccccccccchHHHHHHHHHHHHHH-HhCCCcCCCCCCcCEEEEeeEcCC
Confidence 100 000112233799999999999999999876 3333 8999999999999
Q ss_pred cceeeEEE
Q 012253 365 LTATMFSL 372 (467)
Q Consensus 365 ~~~~~~~~ 372 (467)
.+++++++
T Consensus 247 g~~~~~~l 254 (254)
T cd00327 247 GTNAAVVL 254 (254)
T ss_pred CcceEEEC
Confidence 99887653
|
Members are share strong structural similarity, and are involved in the synthesis and degradation of fatty acids, and the production of polyketides, a diverse group of natural products. |
| >cd00825 decarbox_cond_enzymes decarboxylating condensing enzymes; Family of enzymes that catalyze the formation of a new carbon-carbon bond by a decarboxylating Claisen-like condensation reaction | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.8e-23 Score=206.73 Aligned_cols=245 Identities=15% Similarity=0.100 Sum_probs=172.5
Q ss_pred HHHHHHHHHHHHHHHcCCC----cCCcCEEEEEeccCCCC---------------------CCcHHHHHHHHhcccCCCC
Q 012253 57 VISMSLTVVTSLLEKYKID----PTQIGRLEVGSETVIDK---------------------SKSIKTFLMQIFEKYGNTD 111 (467)
Q Consensus 57 ~~~ma~~Aa~~aL~~agi~----~~~Id~Li~~Tes~~~~---------------------~ps~a~~v~~~Lgl~G~~~ 111 (467)
..+|++.|++++|+++|++ +++||.||++|.++.+. .|+.+..|+..||+ +
T Consensus 11 ~~~l~~~aa~~aL~~Ag~~~~~~~~~i~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lgl----~ 86 (332)
T cd00825 11 VSILGFEAAERAIADAGLSREYQKNPIVGVVVGTGGGSPRFQVFGADAMRAVGPYVVTKAMFPGASGQIATPLGI----H 86 (332)
T ss_pred HHHHHHHHHHHHHHHcCCCccccCCCCEEEEEEeCCccHHHHhhhhccccccCcchhhcccchHHHHHHHHHhCC----C
Confidence 7899999999999999999 99999999999988764 68889999999997 3
Q ss_pred eeEEeeCCcChHHHHHHHHHHHHHHhCCCCCCEEEEEEeeccc--ccC--------------------CCCCCcccccee
Q 012253 112 IEGVDSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDSAV--YAE--------------------GPARPTGGAAAV 169 (467)
Q Consensus 112 ~~~~di~~aC~gg~~AL~~A~~~l~a~~~~~~~aLVV~sD~~~--y~~--------------------~~~~~t~GdGAv 169 (467)
..++++.++|++++.||+.|..+|++|.. +++||+++|... +.. .....++||||+
T Consensus 87 g~~~~v~~~cas~~~al~~A~~~i~~g~~--~~~Lv~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~gdGaa 164 (332)
T cd00825 87 GPAYDVSAACAGSLHALSLAADAVQNGKQ--DIVLAGGSEELAAPMDCEFDAMGALSTPEKASRTFDAAADGFVFGDGAG 164 (332)
T ss_pred CCccccccHhHHHHHHHHHHHHHHHcCCC--CEEEEeccccccCHHHHHHHhhccccCCCCCCCCCCCCCCCEEEEeeEE
Confidence 45788899999999999999999999966 999999999861 100 012346799999
Q ss_pred EEEecCCCCce-----eecccccccccCcccccccCCCCCCceecCcchHHHHHHHHHHHHHHHHHHHHhhhcCCCCccc
Q 012253 170 AMLIGPDAPIA-----FESKLRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKYFCQKFEKLEGRQFSMLD 244 (467)
Q Consensus 170 A~Ll~~~~~~~-----~~~~~~~~~~~~~~df~~p~~~~~~~~vdG~~s~~~y~~a~~~~~~~~~~~~~~~~~~~~~~~d 244 (467)
|+||++.+... ....+.++... .| +..... + .. ....+..+.+..++ .++++++|
T Consensus 165 A~vL~~~~~a~~~~~~~~~~i~~~~~~--~~---~~~~~~-~----~~----~~~~~~~~i~~al~------~agl~~~d 224 (332)
T cd00825 165 ALVVEELEHALARGAHIYAEIVGTAAT--ID---GAGMGA-F----AP----SAEGLARAAKEALA------VAGLTVWD 224 (332)
T ss_pred EEEECcHHHHHHCCCeEEEEEEEEEEc--cC---CCCCCC-C----Cc----CHHHHHHHHHHHHH------HcCCCHhH
Confidence 99999754210 00001111111 11 100000 0 00 12233334444433 34799999
Q ss_pred cceeccCCchHHHHHHHHHhhhhhhhccccCchhhHHhhhcCCCCCCCcchhhhhhhHHHHHHHHHHHHhhhhcCCCccc
Q 012253 245 VDYFVFHSPYNKLVQKSFARLFFNDFLRNASSVDEIAKEKLAPYSTLSDVESYQSRDLEKASQQVAKQLYDLKVQPSTLI 324 (467)
Q Consensus 245 ~d~~i~H~p~~k~~~k~~~~l~~~~~~~~~~~~~~~~~~~l~~~~g~~~e~~~~~~~~~k~~~~~~~~~~~~~~~~s~~~ 324 (467)
||++++|+++.++.++..+++....+ +. +-.+...+
T Consensus 225 id~~~~h~~~~~~~~~~e~~~~~~~~-------------------~~-------------------------~~~~~~~~ 260 (332)
T cd00825 225 IDYLVAHGTGTPIGDVKELKLLRSEF-------------------GD-------------------------KSPAVSAT 260 (332)
T ss_pred CCEEEccCCCCCCCCHHHHHHHHHHh-------------------CC-------------------------CCceeECC
Confidence 99999999999988877766632211 00 00111223
Q ss_pred ccccCccccchHHHHHHHHHhhcCcCC-------------------------CCCEEEEEEeccccceeeEEE
Q 012253 325 PKQVGNMYTASLYAAFASLLHEKHSSL-------------------------EGKRVIMFSYGSGLTATMFSL 372 (467)
Q Consensus 325 ~~~~GN~~taS~~l~L~~~l~~~~~~~-------------------------~G~~ill~syGsG~~~~~~~~ 372 (467)
..++||+++||.++.|..++.. .+.. +|++++++++|.|.+++++++
T Consensus 261 ~~~~G~~~aas~~~~l~~~~~~-~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~Gg~~~~~vl 332 (332)
T cd00825 261 KAMTGNLSSAAVVLAVDEAVLM-LEHGFIPPSIHIEELDEAGLNIVTETTPRELRTALLNGFGLGGTNATLVL 332 (332)
T ss_pred CcccccchhHhHHHHHHHHHHH-HhcCccCCCCCCCCCCcccCcccCCCCCCCCCEEEEeeecCCCeeEEEeC
Confidence 4799999999999999998875 3333 689999999999999887653
|
Members are involved in the synthesis of fatty acids and polyketides, a diverse group of natural products. Both pathways are an iterative series of additions of small carbon units, usually acetate, to a nascent acyl group. There are 2 classes of decarboxylating condensing enzymes, which can be distinguished by sequence similarity, type of active site residues and type of primer units (acetyl CoA or acyl carrier protein (ACP) linked units). |
| >PF00195 Chal_sti_synt_N: Chalcone and stilbene synthases, N-terminal domain; InterPro: IPR001099 Synonym(s): Chalcone synthase, Flavonone synthase, 6'-deoxychalcone synthase Naringenin-chalcone synthases (2 | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.3e-23 Score=195.35 Aligned_cols=167 Identities=22% Similarity=0.309 Sum_probs=132.0
Q ss_pred CceeEEeEEEEecCCceeehhHHhhhh----CCCc-----Cee-----EEeccceEeeccCC------------------
Q 012253 6 PKNVGILALDIYFPPTCVLQEALEVHD----GVSK-----GKY-----TVGLGQDCMAFCSE------------------ 53 (467)
Q Consensus 6 ~~~vgI~ai~~y~P~~~v~~~el~~~~----g~~~-----~k~-----~~Gig~r~~av~~~------------------ 53 (467)
+....|.+||..+|+++++|+|+.+.. +.+. +++ ..||..|++.++.+
T Consensus 12 ~g~A~Il~IgTA~P~~~~~Q~~~~e~~~~~~~~~~~~~~~~~l~ri~~~sgI~~R~~vl~~~~~~~~p~~~~~~~ps~~~ 91 (226)
T PF00195_consen 12 PGPAYILSIGTAVPPHRITQEEIAEFFFRITHSDDLPDLRRKLRRIFENSGIEKRHSVLPEEWLDEYPSFWDFADPSLAE 91 (226)
T ss_dssp SSSEEEEEEEEE-SSEEEEGCCHHHHHHHHTT-TTGHHHHHHHHHHHHHST-SEEEESS-HHHHHTSGGGHSSSSS-HHH
T ss_pred CCCeEEEEEEEeCCCceecHHHHHHHHHHHhcccchhHHHHHHHhhhhccccceeccccchhhhhcCcchhhccCccHHH
Confidence 467899999999999999999987752 3222 233 37999998765421
Q ss_pred -----CCCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHhcccCCCCeeEEeeCC-cChHHHHH
Q 012253 54 -----VEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTN-ACYGGTAA 127 (467)
Q Consensus 54 -----~Ed~~~ma~~Aa~~aL~~agi~~~~Id~Li~~Tes~~~~~ps~a~~v~~~Lgl~G~~~~~~~di~~-aC~gg~~A 127 (467)
.+.+..|+.+|++++|+++|++++||++||+.|+|+.. .|++..+|.++||| ++++..+.+.+ ||+||+.|
T Consensus 92 R~~~~~~~a~~L~~~Aa~~AL~~~g~~~~dIthlv~vs~TG~~-~PglD~~l~~~LgL--~~~v~R~~i~~~GC~gg~~~ 168 (226)
T PF00195_consen 92 RNALYAEEAPPLAEEAARKALAEAGLDPSDITHLVTVSCTGIA-APGLDARLINRLGL--RPDVQRTPIFGMGCAGGAAG 168 (226)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTS-GGGECEEEEEESSSSE-CS-HHHHHHHHHT----TTSEEEEEES-GGGHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCcccceEEEEecCCcC-CCchhHHHHhcCCC--CCCcEEEEEeccchhhHHHH
Confidence 14578999999999999999999999999999999974 89999999999999 89999999975 99999999
Q ss_pred HHHHHHHHHhCCCCCCEEEEEEeecc--cccCC-C-C------CCccccceeEEEecCCC
Q 012253 128 LFNCVNWVESASWDGRYGLVVCTDSA--VYAEG-P-A------RPTGGAAAVAMLIGPDA 177 (467)
Q Consensus 128 L~~A~~~l~a~~~~~~~aLVV~sD~~--~y~~~-~-~------~~t~GdGAvA~Ll~~~~ 177 (467)
|..|.++.+++ |+.+|||||+|++ .|... . . ...|||||+|+||+.+|
T Consensus 169 L~~A~~~~~~~--p~a~VLvv~vElcsl~~~~~~~~~~~~lv~~aLFgDGaAA~vv~~dP 226 (226)
T PF00195_consen 169 LRRAKDIARAN--PGARVLVVCVELCSLHFQAPNDDSLDNLVANALFGDGAAAVVVGADP 226 (226)
T ss_dssp HHHHHHHHHHS--TT-EEEEEEEEEGGGTHHHCCTTSHHHHHHHHHB-EEEEEEEEESS-
T ss_pred HHHHHHHHhCC--ccceEEEEEEEeeEEEEecCCcccHHHHhHHhhhcCCceEEEEccCC
Confidence 99999999999 8899999999999 34321 1 1 24689999999999875
|
3.1.74 from EC) and stilbene synthases (STS) (formerly known as resveratrol synthases) are related plant enzymes. CHS is an important enzyme in flavanoid biosynthesis and STS is a key enzyme in stilbene-type phyloalexin biosynthesis. Both enzymes catalyse the addition of three molecules of malonyl-CoA to a starter CoA ester (a typical example is 4-coumaroyl-CoA), producing either a chalcone (with CHS) or stilbene (with STS) []. These enzymes have a conserved cysteine residue, located in the central section of the protein sequence, which is essential for the catalytic activity of both enzymes and probably represents the binding site for the 4-coumaryl-CoA group [].; GO: 0016746 transferase activity, transferring acyl groups, 0009058 biosynthetic process; PDB: 3EUO_B 3EUT_C 3EUQ_D 3E1H_A 3AWK_A 3AWJ_A 2H84_A 3A5S_A 3A5Q_B 3A5R_A .... |
| >PF08392 FAE1_CUT1_RppA: FAE1/Type III polyketide synthase-like protein; InterPro: IPR013601 This domain is found in proteins that are described as 3-ketoacyl-CoA synthases, type III polyketide synthases, fatty acid elongases and fatty acid condensing enzymes, and are found in both prokaryotic and eukaryotic (mainly plant) species | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.5e-17 Score=161.25 Aligned_cols=170 Identities=21% Similarity=0.332 Sum_probs=138.2
Q ss_pred CCCCceeEEeEEEEecCCc--eeehhHHhhhhC----CCcC------ee--EEeccceEeeccC------CC-------C
Q 012253 3 SWHPKNVGILALDIYFPPT--CVLQEALEVHDG----VSKG------KY--TVGLGQDCMAFCS------EV-------E 55 (467)
Q Consensus 3 ~~~~~~vgI~ai~~y~P~~--~v~~~el~~~~g----~~~~------k~--~~Gig~r~~av~~------~~-------E 55 (467)
+.||..|.+...+.|-|+. +++.+.+.++.. .+++ |+ +.|||.+.. +|+ ++ +
T Consensus 3 ~~R~r~VYLvDfac~kP~~~~~v~~~~~~e~~~~~~~f~~~sl~F~~kIlerSGlG~eTy-~P~~~~~~p~~~s~~~a~~ 81 (290)
T PF08392_consen 3 MRRPRPVYLVDFACYKPPDELRVSREEFIEHARRCGRFDEESLDFQRKILERSGLGDETY-LPPALHEIPPDPSLAAARE 81 (290)
T ss_pred cCCCCCEEEEeeeecCCCcccccCHHHHHHHHHhcccCChhHHHHHHHHHHhcCCCcccc-CCcccccCCCcccHHHHHH
Confidence 4578899999999999975 688888887642 2332 12 479998865 222 11 2
Q ss_pred CHHHHHHHHHHHHHHHcCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHhcccCCCCeeEEeeCC-cChHHHHHHHHHHHH
Q 012253 56 DVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTN-ACYGGTAALFNCVNW 134 (467)
Q Consensus 56 d~~~ma~~Aa~~aL~~agi~~~~Id~Li~~Tes~~~~~ps~a~~v~~~Lgl~G~~~~~~~di~~-aC~gg~~AL~~A~~~ 134 (467)
.+..+...|++++|+++|++|+|||.||+.+++. ...||++++|.+++|+ .+++..+++.. ||++++.+|++|.++
T Consensus 82 Eae~v~f~av~~LL~ktgv~p~dIdiLVvncs~f-~ptPSLsamIvnr~~m--r~di~~~nLsGMGCsAgliai~lA~~l 158 (290)
T PF08392_consen 82 EAEMVIFGAVDDLLAKTGVKPSDIDILVVNCSLF-NPTPSLSAMIVNRYGM--RSDIKSYNLSGMGCSAGLIAIDLAKDL 158 (290)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHCCEEEEECcCC-CcCCcHHHHHHHHhCC--CcCeeeecccCCcchhhHHHHHHHHHH
Confidence 3567888999999999999999999999877664 6799999999999999 88999999985 999999999999999
Q ss_pred HHhCCCCCCEEEEEEeeccc--ccCCCC------CCccccceeEEEecCCCC
Q 012253 135 VESASWDGRYGLVVCTDSAV--YAEGPA------RPTGGAAAVAMLIGPDAP 178 (467)
Q Consensus 135 l~a~~~~~~~aLVV~sD~~~--y~~~~~------~~t~GdGAvA~Ll~~~~~ 178 (467)
++.+ |+.+||||++|... +-.+++ ...|++||+|+||+..+.
T Consensus 159 L~~~--p~~~ALVVstE~~s~~~Y~G~~rsmlv~NcLFr~GgAAvLLSn~~~ 208 (290)
T PF08392_consen 159 LQAH--PNSYALVVSTENISANWYRGNDRSMLVSNCLFRMGGAAVLLSNKPS 208 (290)
T ss_pred HHhC--CCcEEEEEEEeecccccccCCcHHHhhccccccCCceeEEeecCcc
Confidence 9999 77999999999982 223332 357899999999998864
|
The region contains the active site residues, as well as motifs involved in substrate binding []. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0006633 fatty acid biosynthetic process, 0016020 membrane |
| >PRK06147 3-oxoacyl-(acyl carrier protein) synthase; Validated | Back alignment and domain information |
|---|
Probab=99.71 E-value=9.9e-16 Score=155.95 Aligned_cols=297 Identities=15% Similarity=0.066 Sum_probs=186.2
Q ss_pred eeEEeEEEEecCCce------------eehhHHhhhhCCC-cCeeE--EeccceEeeccCCCCCHHHHHHHHHHHHHHHc
Q 012253 8 NVGILALDIYFPPTC------------VLQEALEVHDGVS-KGKYT--VGLGQDCMAFCSEVEDVISMSLTVVTSLLEKY 72 (467)
Q Consensus 8 ~vgI~ai~~y~P~~~------------v~~~el~~~~g~~-~~k~~--~Gig~r~~av~~~~Ed~~~ma~~Aa~~aL~~a 72 (467)
+|.|.+++...|--. +++.+.....+.+ .+++. +|+..++ + ...+....|+..|++++|+++
T Consensus 4 ~v~I~~~g~vs~lG~~~~~~~aa~ragi~~~~~~~~~~~~~~~~i~~~~~~~~~~--~-~~~~r~~~La~~Al~~aL~~a 80 (348)
T PRK06147 4 ALAIVGSGMVTAVGLDAPSSCAAIRARLDNFQETRFIDPPGGEWLIGAPVPLPPP--W-RGPERLAEMAAPAIAEALEGL 80 (348)
T ss_pred ceEEEecceeecCcCCHHHHHHHHHcccccccccccccCCCCCceEeecCcCCcc--c-CchHHHHHHHHHHHHHHHHhc
Confidence 489999998888654 2333333333333 45554 3454444 3 345688999999999999999
Q ss_pred C-CCcCCcCEEEEEec-----cCCCCCCcHHHHHHHHhcccCCCCeeEEeeCCcChHHHHHHHHHHHHHHhCCCCCCEEE
Q 012253 73 K-IDPTQIGRLEVGSE-----TVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAALFNCVNWVESASWDGRYGL 146 (467)
Q Consensus 73 g-i~~~~Id~Li~~Te-----s~~~~~ps~a~~v~~~Lgl~G~~~~~~~di~~aC~gg~~AL~~A~~~l~a~~~~~~~aL 146 (467)
+ +++++|+++++.++ ++.+..++.+..|++.||+ ..+..++++.++|.+++.||..|..+|++|.+ +.+|
T Consensus 81 ~~~~~~~i~lil~~~~~~~~~~~~~~~~~~~~~~~~~lG~--~~~~~~~~i~~~casg~~Al~~A~~~i~~G~~--~~~l 156 (348)
T PRK06147 81 PALDASEAPLLLCVAEEERPGRPPDLEERLLRELEARLGL--RLEPGSAVIARGRVSGAVALAQARRLIAAGGC--PRVL 156 (348)
T ss_pred ccccccCCcEEEEeCchhcCCCCcchHHHHHHHHHHHhCC--CCCCCcccccccchHHHHHHHHHHHHHHcCCC--CEEE
Confidence 9 79999999998655 3445566778899999997 34456899999999999999999999999976 9999
Q ss_pred EEEeecc-c------cc--------CCCCCCccccceeEEEecCCCCc-eeecccccccccCccccc-ccCCCCCCceec
Q 012253 147 VVCTDSA-V------YA--------EGPARPTGGAAAVAMLIGPDAPI-AFESKLRGSHMSHAYDFY-KPNLASEYPVVD 209 (467)
Q Consensus 147 VV~sD~~-~------y~--------~~~~~~t~GdGAvA~Ll~~~~~~-~~~~~~~~~~~~~~~df~-~p~~~~~~~~vd 209 (467)
|+++|.. . |. +...-..+|+||+|+||++.+.- .-.....+.......+.+ ... . -| .+
T Consensus 157 vgg~d~~~~~~~~~~~~~~~~l~~~~~~~G~v~GEGA~a~vLe~~~~A~~rga~i~a~g~~~~~~~~~~~~-~--~p-~~ 232 (348)
T PRK06147 157 VAGVDSLLTGPTLAHYEARDRLLTSQNSNGFIPGEAAAAVLLGRPAGGEAPGLPLLGLGLGREPAPVGESE-D--LP-LR 232 (348)
T ss_pred EEeeccccCHHHHHHHHHhhccCCCCCCCceeeeceEEEEEEccHhhhhcCCCceEEEEEeecCCCcccCC-C--CC-CC
Confidence 9999975 2 11 11123467999999999975421 000001110011111221 110 0 01 02
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHhhhcCCCCccccceeccCCchHHHHHHH----HHhhhhhhhccccCchhhHHhhhc
Q 012253 210 GKLSQTCYLMALDSCYKYFCQKFEKLEGRQFSMLDVDYFVFHSPYNKLVQKS----FARLFFNDFLRNASSVDEIAKEKL 285 (467)
Q Consensus 210 G~~s~~~y~~a~~~~~~~~~~~~~~~~~~~~~~~d~d~~i~H~p~~k~~~k~----~~~l~~~~~~~~~~~~~~~~~~~l 285 (467)
| +.+..+++..+ +.+++.++||||++.|....+...+. ..+++ .+ ...
T Consensus 233 g--------~gl~~ai~~AL------~~agl~~~dId~v~ah~~gt~~~d~~e~~A~~~~f-~~---~~~---------- 284 (348)
T PRK06147 233 G--------DGLTQAIRAAL------AEAGCGLEDMDYRIADLNGEQYRFKEAALAEMRLF-RV---RKE---------- 284 (348)
T ss_pred h--------HHHHHHHHHHH------HHcCCCHHHCCEEEcCCCCCccchHHHHHHHHHHh-hh---ccC----------
Confidence 2 22333333333 33478999999999998866553332 22221 00 000
Q ss_pred CCCCCCCcchhhhhhhHHHHHHHHHHHHhhhhcCCCcccccccCccccchHHHHHHHHHhh-cCcCCCCCEEEEEEeccc
Q 012253 286 APYSTLSDVESYQSRDLEKASQQVAKQLYDLKVQPSTLIPKQVGNMYTASLYAAFASLLHE-KHSSLEGKRVIMFSYGSG 364 (467)
Q Consensus 286 ~~~~g~~~e~~~~~~~~~k~~~~~~~~~~~~~~~~s~~~~~~~GN~~taS~~l~L~~~l~~-~~~~~~G~~ill~syGsG 364 (467)
.. |-......+||+++|+-.+.|+..+.. .....+|.+++++|-.-.
T Consensus 285 ----~~----------------------------~~~~~k~~~Gh~~aAaG~~~~~~a~~~~~~g~~~g~~~L~~s~~d~ 332 (348)
T PRK06147 285 ----FF----------------------------DLWHPAECIGEIGAAIGPALLGVALAASRKGYGPGPNVLCHLSDDD 332 (348)
T ss_pred ----CC----------------------------ceecchHhhcchHHHHHHHHHHHHHHHHHcCcCCCCcEEEEecCCC
Confidence 00 011122679999999988888764432 123468999999998765
Q ss_pred cceeeEEEEEe
Q 012253 365 LTATMFSLQLQ 375 (467)
Q Consensus 365 ~~~~~~~~~~~ 375 (467)
-.-++++++-+
T Consensus 333 g~r~a~~l~~~ 343 (348)
T PRK06147 333 GARAALVLEYR 343 (348)
T ss_pred CceEEEEEecc
Confidence 55566676644
|
|
| >PF08541 ACP_syn_III_C: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal ; InterPro: IPR013747 This domain is found on 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III 2 | Back alignment and domain information |
|---|
Probab=99.68 E-value=8.5e-17 Score=131.60 Aligned_cols=89 Identities=25% Similarity=0.331 Sum_probs=72.9
Q ss_pred hcCCCCccccceeccCCchHHHHHHHHHhhhhhhhccccCchhhHHhhhcCCCCCCCcchhhhhhhHHHHHHHHHHHHhh
Q 012253 236 EGRQFSMLDVDYFVFHSPYNKLVQKSFARLFFNDFLRNASSVDEIAKEKLAPYSTLSDVESYQSRDLEKASQQVAKQLYD 315 (467)
Q Consensus 236 ~~~~~~~~d~d~~i~H~p~~k~~~k~~~~l~~~~~~~~~~~~~~~~~~~l~~~~g~~~e~~~~~~~~~k~~~~~~~~~~~ 315 (467)
+++|++++|||++++||++.++.+...+.+ |+++++.+ .++
T Consensus 2 ~~~g~~~~did~~i~hq~~~~~~~~~~~~l------------------------gi~~~~~~---------~~~------ 42 (90)
T PF08541_consen 2 ERAGLSPDDIDHFIPHQASKKILDSIAKRL------------------------GIPPERFP---------DNL------ 42 (90)
T ss_dssp HHTT--GGGESEEEE-SSSHHHHHHHHHHH------------------------TS-GGGBE----------TH------
T ss_pred ccccCCHHHCCEEEeCCCCHHHHHHHHHHc------------------------CCcHHHHH---------HHH------
Confidence 456899999999999999999999988777 78877653 122
Q ss_pred hhcCCCcccccccCccccchHHHHHHHHHhhcCcCCCCCEEEEEEeccccceeeEEEEE
Q 012253 316 LKVQPSTLIPKQVGNMYTASLYAAFASLLHEKHSSLEGKRVIMFSYGSGLTATMFSLQL 374 (467)
Q Consensus 316 ~~~~~s~~~~~~~GN~~taS~~l~L~~~l~~~~~~~~G~~ill~syGsG~~~~~~~~~~ 374 (467)
+++||+++||+|++|++++++ +++++||+|+++++|+|+++++++++|
T Consensus 43 ----------~~~Gn~~sa~~~~~L~~~~~~-g~~~~Gd~vl~~~~G~G~~~~~~~~~~ 90 (90)
T PF08541_consen 43 ----------AEYGNTGSASIPINLADALEE-GRIKPGDRVLLVGFGAGFSWGAAVLRW 90 (90)
T ss_dssp ----------HHH-B-GGGHHHHHHHHHHHT-TSSCTTEEEEEEEEETTTEEEEEEEE-
T ss_pred ----------hccCcchhhhHHHHHHHHHHc-CCCCCCCEEEEEEEEhhheeEEEEEEC
Confidence 799999999999999999999 789999999999999999999999987
|
3.1.41 from EC, the enzyme responsible for initiating the chain of reactions of the fatty acid synthase in plants and bacteria. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0008610 lipid biosynthetic process; PDB: 3IL3_A 1ZOW_C 3GWE_B 3GWA_B 1UB7_B 3LED_B 2EBD_A 1HNJ_A 2EFT_B 1HN9_B .... |
| >TIGR02845 spore_V_AD stage V sporulation protein AD | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.1e-14 Score=141.21 Aligned_cols=182 Identities=13% Similarity=0.099 Sum_probs=124.0
Q ss_pred CCCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHhcccCCCCeeEEeeCCcChHHHHHHHHHHH
Q 012253 54 VEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAALFNCVN 133 (467)
Q Consensus 54 ~Ed~~~ma~~Aa~~aL~~agi~~~~Id~Li~~Tes~~~~~ps~a~~v~~~Lgl~G~~~~~~~di~~aC~gg~~AL~~A~~ 133 (467)
++...+|+.+|+++||+++|++++|||.|++|+. +. .+..++++++.||+ + .+++.+||++++.||.+|..
T Consensus 47 EkAe~eLa~eAa~~ALekAGL~~~DID~IIvGdl-~~--Q~~~As~vA~~LGI---P---~fdV~~ACSTf~~AL~lAa~ 117 (327)
T TIGR02845 47 EKAERKLMEDAVNLALKKANLKKDDVDFFLAGDL-LN--QIITANFVARDLGI---P---FLGLYGACSTSMETLALGAM 117 (327)
T ss_pred chhHHHHHHHHHHHHHHHcCCCHHHCCEEEEeCC-CC--cccHHHHHHHHhCC---C---EEEEeccCHHHHHHHHHHHH
Confidence 4577899999999999999999999999999973 32 34678899999986 3 49999999999999999999
Q ss_pred HHHhCCCCCCEEEEEEeecc-------ccc-CC--CCC---CccccceeEEEecCCCCceeecccccccccCcccccccC
Q 012253 134 WVESASWDGRYGLVVCTDSA-------VYA-EG--PAR---PTGGAAAVAMLIGPDAPIAFESKLRGSHMSHAYDFYKPN 200 (467)
Q Consensus 134 ~l~a~~~~~~~aLVV~sD~~-------~y~-~~--~~~---~t~GdGAvA~Ll~~~~~~~~~~~~~~~~~~~~~df~~p~ 200 (467)
+|++|.+ ++||||+|+.. +|. ++ ..+ ..+||||+|+||++.+. .+.+.+.-.-.+-|+-.-+
T Consensus 118 lI~SG~a--d~VLVV~Ssh~S~AErqfr~p~eyg~q~~~ta~~tgdGAGA~vl~~~~~---~~~i~~~t~gkv~d~g~~d 192 (327)
T TIGR02845 118 LVDGGFA--DRVLAATSSHYATAERQFRYPTEYGVQKPPTAQWTVTGAGAVLLASTGG---GPRITSATIGKVVDYGITD 192 (327)
T ss_pred HHhCCCC--CEEEEEEecccchhhhhcccccccccCCCCeeeEEEcccEEEEEeecCC---CCceEEEEEEEEEecCCCC
Confidence 9999977 99999998865 344 22 122 35799999999988742 0111111122233432211
Q ss_pred CCCCCceecCcchHHHHHHHHH-HHHHHHHHHHHhhhcCCCCccccceeccCCchHHHHHHHHHhhh
Q 012253 201 LASEYPVVDGKLSQTCYLMALD-SCYKYFCQKFEKLEGRQFSMLDVDYFVFHSPYNKLVQKSFARLF 266 (467)
Q Consensus 201 ~~~~~~~vdG~~s~~~y~~a~~-~~~~~~~~~~~~~~~~~~~~~d~d~~i~H~p~~k~~~k~~~~l~ 266 (467)
+. .| | .++. .+.+.+.+.+ .+.+..++|.|.++.-- -.++.++++..|+
T Consensus 193 ~~----nm-g--------aamapaa~dti~~h~---~d~~~~~~~yd~i~tgd-lg~vg~~i~~~ll 242 (327)
T TIGR02845 193 PL----DM-G--------AAMAPAAADTIEAHF---KDTGRSVDDYDLIVTGD-LARVGSEILRKLL 242 (327)
T ss_pred cc----cc-h--------hhhhHHHHHHHHHHH---HHcCCChhhccEEEecc-hHHHHHHHHHHHH
Confidence 10 01 1 1121 2222333333 34578899999988543 3455666666664
|
Bacillus and Clostridium species contain about 10 % dipicolinic acid (pyridine-2,6-dicarboxylic acid) by weight. This protein family, SpoVAD, belongs to the spoVA operon that is suggested to act in the transport of dipicolinic acid (DPA) from the mother cell, where DPA is synthesized, to the forespore, a process essential to sporulation. Members of this protein family are found, so far, in exactly those species believed capable of endospore formation. |
| >PRK08304 stage V sporulation protein AD; Validated | Back alignment and domain information |
|---|
Probab=99.55 E-value=4.1e-13 Score=132.43 Aligned_cols=182 Identities=14% Similarity=0.095 Sum_probs=123.5
Q ss_pred CCCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHhcccCCCCeeEEeeCCcChHHHHHHHHHHH
Q 012253 54 VEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAALFNCVN 133 (467)
Q Consensus 54 ~Ed~~~ma~~Aa~~aL~~agi~~~~Id~Li~~Tes~~~~~ps~a~~v~~~Lgl~G~~~~~~~di~~aC~gg~~AL~~A~~ 133 (467)
++...+|+.+|+++||+++|++++|||.||+|+.. . .+..++++++.||+ ..+++.+||+++..||.+|..
T Consensus 53 EkAeseLa~eAa~~ALekAGI~~~DID~lI~Gdll--~-Q~~sAs~vA~~LGI------Pa~dV~gACST~~~AL~lAa~ 123 (337)
T PRK08304 53 EKAERKMMEDAIQQALQKANLKKSDIDYLLAGDLL--N-QIISANFAARELGI------PFLGLYGACSTMMESLALGSM 123 (337)
T ss_pred cccHHHHHHHHHHHHHHHcCCCHHHCCEEEEECCC--C-CcchHHHHHHHhCC------cEEEEeccCHHHHHHHHHHHH
Confidence 55778999999999999999999999999999752 2 34678899999875 489999999999999999999
Q ss_pred HHHhCCCCCCEEEEEEeecc-------cccCCC--CC----CccccceeEEEecCCCCceeecccccccccCcccccccC
Q 012253 134 WVESASWDGRYGLVVCTDSA-------VYAEGP--AR----PTGGAAAVAMLIGPDAPIAFESKLRGSHMSHAYDFYKPN 200 (467)
Q Consensus 134 ~l~a~~~~~~~aLVV~sD~~-------~y~~~~--~~----~t~GdGAvA~Ll~~~~~~~~~~~~~~~~~~~~~df~~p~ 200 (467)
+|++|.+ ++||||+|+.. ||.... -+ ...++||.|+||++...- +.+.+.-.-.+-|+-.-+
T Consensus 124 lI~SG~a--d~VLVV~Ssh~s~aerqfr~P~eyg~qrp~taqwtvtGAGA~i~~~~~~~---~~i~~~t~Gkv~D~g~~d 198 (337)
T PRK08304 124 LIDGGFA--DRVLAATSSHFATAERQFRFPTEYGGQRPPTAQWTVTGAGAVLLSREGSG---PRITHATIGKVVDLGIKD 198 (337)
T ss_pred HHhcCCC--CEEEEEEcchhhhhhhhccCchhccccCCCcceEEeeccEEEEEecCCCC---ceEEEEeEEEEEecCCCC
Confidence 9999977 99999999976 333221 12 234999999999987520 111111112233432211
Q ss_pred CCCCCceecCcchHHHHHHHHH-HHHHHHHHHHHhhhcCCCCccccceeccCCchHHHHHHHHHhhh
Q 012253 201 LASEYPVVDGKLSQTCYLMALD-SCYKYFCQKFEKLEGRQFSMLDVDYFVFHSPYNKLVQKSFARLF 266 (467)
Q Consensus 201 ~~~~~~~vdG~~s~~~y~~a~~-~~~~~~~~~~~~~~~~~~~~~d~d~~i~H~p~~k~~~k~~~~l~ 266 (467)
.. .| | .++. .+.+.+.+.+ .+.+.+++|.|.++.-- -.++.++++..|+
T Consensus 199 ~~----nm-g--------aaMapAa~dti~~h~---~d~~~~~~~yDli~tGD-lg~vG~~i~~~ll 248 (337)
T PRK08304 199 PN----DM-G--------AAMAPAAADTIQQHF---KDTGRSPEDYDLIVTGD-LGRVGREILKELL 248 (337)
T ss_pred cc----cc-h--------hhhhHHHHHHHHHHH---HHcCCChhhccEEEEcc-hHHHHHHHHHHHH
Confidence 10 01 1 1121 2223333333 44578899999988542 3455556666664
|
|
| >cd00834 KAS_I_II Beta-ketoacyl-acyl carrier protein (ACP) synthase (KAS), type I and II | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.2e-11 Score=128.44 Aligned_cols=116 Identities=10% Similarity=0.056 Sum_probs=89.1
Q ss_pred CHHHHHHHHHHHHHHHcCCCcCCcCE----EEEEeccCCC--------------------------CCCcHHHHHHHHhc
Q 012253 56 DVISMSLTVVTSLLEKYKIDPTQIGR----LEVGSETVID--------------------------KSKSIKTFLMQIFE 105 (467)
Q Consensus 56 d~~~ma~~Aa~~aL~~agi~~~~Id~----Li~~Tes~~~--------------------------~~ps~a~~v~~~Lg 105 (467)
....|++.|++++|+++|+++++||. ++++|.++.. ..+..+.+|+..||
T Consensus 70 ~~~~l~~~aa~~AL~dAgl~~~~~~~~~~gv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lg 149 (406)
T cd00834 70 RFAQFALAAAEEALADAGLDPEELDPERIGVVIGSGIGGLATIEEAYRALLEKGPRRVSPFFVPMALPNMAAGQVAIRLG 149 (406)
T ss_pred HHHHHHHHHHHHHHHHcCCCcccCCccceEEEEccCCcchHHHHHHHHHHHhcCCcccChhHHhhhcccHHHHHHHHHhC
Confidence 35689999999999999999877664 6666655321 12457889999999
Q ss_pred ccCCCCeeEEeeCCcChHHHHHHHHHHHHHHhCCCCCCEEEEEEeeccc--c---------------------c-CC---
Q 012253 106 KYGNTDIEGVDSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDSAV--Y---------------------A-EG--- 158 (467)
Q Consensus 106 l~G~~~~~~~di~~aC~gg~~AL~~A~~~l~a~~~~~~~aLVV~sD~~~--y---------------------~-~~--- 158 (467)
+. ..++.+..+|++++.||..|..+|++|.. +.|||+++|... + . +.
T Consensus 150 l~----g~~~~v~~acas~~~Al~~A~~~i~~G~~--d~aLvgg~d~~~~p~~~~~~~~~~~l~~~~~~p~~~~~pf~~~ 223 (406)
T cd00834 150 LR----GPNYTVSTACASGAHAIGDAARLIRLGRA--DVVIAGGAEALITPLTLAGFAALRALSTRNDDPEKASRPFDKD 223 (406)
T ss_pred CC----CcccccchHHHHHHHHHHHHHHHHHcCCC--CEEEEcCcccccCHHHHHHHHhcCCcCCCCCCCccCCCCCCCC
Confidence 72 34678889999999999999999999977 999999999752 0 0 00
Q ss_pred CCCCccccceeEEEecCCC
Q 012253 159 PARPTGGAAAVAMLIGPDA 177 (467)
Q Consensus 159 ~~~~t~GdGAvA~Ll~~~~ 177 (467)
.+..+.||||+|+||++.+
T Consensus 224 ~~g~~~geGA~a~vL~~~~ 242 (406)
T cd00834 224 RDGFVLGEGAGVLVLESLE 242 (406)
T ss_pred CCCEeeeccEEEEEEecHH
Confidence 1124569999999998753
|
KASs are responsible for the elongation steps in fatty acid biosynthesis. KASIII catalyses the initial condensation and KAS I and II catalyze further elongation steps by Claisen condensation of malonyl-acyl carrier protein (ACP) with acyl-ACP. |
| >cd00829 SCP-x_thiolase Thiolase domain associated with sterol carrier protein (SCP)-x isoform and related proteins; SCP-2 has multiple roles in intracellular lipid circulation and metabolism | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.1e-10 Score=120.29 Aligned_cols=106 Identities=14% Similarity=0.130 Sum_probs=91.2
Q ss_pred eccceEeeccCCCCCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHhcccCCCCeeEEeeCCcC
Q 012253 42 GLGQDCMAFCSEVEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNAC 121 (467)
Q Consensus 42 Gig~r~~av~~~~Ed~~~ma~~Aa~~aL~~agi~~~~Id~Li~~Tes~~~~~ps~a~~v~~~Lgl~G~~~~~~~di~~aC 121 (467)
|+|+..+.- ..+.+..+|+++|++++|+++|+++++||.|++++..+....+..+..++..||+ +.+.++++.++|
T Consensus 2 G~g~t~~~~-~~~~~~~eL~~~A~~~Al~dagl~~~~Id~vi~g~~~~~~~~~~~a~~va~~lGl---~~~~~~~v~~~c 77 (375)
T cd00829 2 GVGMTPFGR-RSDRSPLELAAEAARAALDDAGLEPADIDAVVVGNAAGGRFQSFPGALIAEYLGL---LGKPATRVEAAG 77 (375)
T ss_pred eeeecCccc-CCCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEecccccccccchHHHHHHHcCC---CCcceeeEeCcc
Confidence 556555432 1367899999999999999999999999999999876665456788999999998 478899999999
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCEEEEEEeecc
Q 012253 122 YGGTAALFNCVNWVESASWDGRYGLVVCTDSA 153 (467)
Q Consensus 122 ~gg~~AL~~A~~~l~a~~~~~~~aLVV~sD~~ 153 (467)
.+++.+|..|...|++|.. +.|||+++|..
T Consensus 78 ~sg~~al~~Aa~~I~sG~~--~~vlv~g~e~~ 107 (375)
T cd00829 78 ASGSAAVRAAAAAIASGLA--DVVLVVGAEKM 107 (375)
T ss_pred HHHHHHHHHHHHHHHhCCC--CEEEEEEEeec
Confidence 9999999999999999966 99999999964
|
The N-terminal presequence in the SCP-x isoform represents a peroxisomal 3-ketacyl-Coa thiolase specific for branched-chain acyl CoAs, which is proteolytically cleaved from the sterol carrier protein. |
| >smart00825 PKS_KS Beta-ketoacyl synthase | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.9e-11 Score=126.42 Aligned_cols=114 Identities=18% Similarity=0.136 Sum_probs=90.8
Q ss_pred HHHHHHHHHHHHHHHcCCCcCCcC----EEEEEeccCCCC-------------------CCcHHHHHHHHhcccCCCCee
Q 012253 57 VISMSLTVVTSLLEKYKIDPTQIG----RLEVGSETVIDK-------------------SKSIKTFLMQIFEKYGNTDIE 113 (467)
Q Consensus 57 ~~~ma~~Aa~~aL~~agi~~~~Id----~Li~~Tes~~~~-------------------~ps~a~~v~~~Lgl~G~~~~~ 113 (467)
...|++.|++++|+++|+++++|| .|++|+.++.+. .+..+..|+..||+.| .
T Consensus 87 ~~~l~~~aa~~Al~dAGl~~~~id~~~~gv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~~lgl~g----~ 162 (424)
T smart00825 87 QQRLLLEVAWEALEDAGIDPESLRGSRTGVFVGAMSSDYAELLARDPEDIEGYAATGTARSFIANRISYFFDLRG----P 162 (424)
T ss_pred HHHHHHHHHHHHHHHcCCChhHcCCCCCEEEEEEcHHHHHHHHhhCccccchhhhccchhHHHHHHHHHHhCCCC----C
Confidence 346999999999999999999999 889998765432 3456778999999822 4
Q ss_pred EEeeCCcChHHHHHHHHHHHHHHhCCCCCCEEEEEEeeccc------------ccC-------C---CCCCccccceeEE
Q 012253 114 GVDSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDSAV------------YAE-------G---PARPTGGAAAVAM 171 (467)
Q Consensus 114 ~~di~~aC~gg~~AL~~A~~~l~a~~~~~~~aLVV~sD~~~------------y~~-------~---~~~~t~GdGAvA~ 171 (467)
++.+..+|++++.||..|.++|++|.. +.+||+++|... +.. . .+....||||+|+
T Consensus 163 ~~~v~~acasg~~Al~~A~~~I~~G~~--d~vlvgg~~~~~~~~~~~~~~~~~~l~~~~~~~pf~~~~~g~~~geGAaal 240 (424)
T smart00825 163 SVTVDTACSSSLVALHLACQSLRSGEC--DMALAGGVNLILSPDTFVGFSRAGMLSPDGRCKTFDADADGYVRGEGVGVV 240 (424)
T ss_pred ccccccHhHHHHHHHHHHHHHHHcCCC--CeeEEeeeeecCCHHHHHHHhhcCCCCCCCCCCCCCCCCCcccccceEEEE
Confidence 688889999999999999999999977 899999999641 000 0 1124569999999
Q ss_pred EecCC
Q 012253 172 LIGPD 176 (467)
Q Consensus 172 Ll~~~ 176 (467)
||++.
T Consensus 241 VLe~~ 245 (424)
T smart00825 241 VLKRL 245 (424)
T ss_pred EEccH
Confidence 99974
|
The structure of beta-ketoacyl synthase is similar to that of the thiolase family and also chalcone synthase. The active site of beta-ketoacyl synthase is located between the N and C-terminal domains. |
| >PRK06064 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.8e-10 Score=119.32 Aligned_cols=107 Identities=20% Similarity=0.150 Sum_probs=90.2
Q ss_pred EEeccceEeeccCCCCCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEeccCCCC--CCcHHHHHHHHhcccCCCCeeEEee
Q 012253 40 TVGLGQDCMAFCSEVEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDK--SKSIKTFLMQIFEKYGNTDIEGVDS 117 (467)
Q Consensus 40 ~~Gig~r~~av~~~~Ed~~~ma~~Aa~~aL~~agi~~~~Id~Li~~Tes~~~~--~ps~a~~v~~~Lgl~G~~~~~~~di 117 (467)
..|.++..+. ...+++..+|+++|++++|+++|+++++||.|++++.++... .+..+..++..||+ +.+.++++
T Consensus 6 IvG~~~tp~~-~~~~~~~~eLa~~a~~~Al~dagl~~~~Id~vi~g~~~~~~~~~~~~~a~~va~~lGl---~~~~~~~v 81 (389)
T PRK06064 6 IIGVGQTKFG-ELWDVSLRDLAVEAGLEALEDAGIDGKDIDAMYVGNMSAGLFVSQEHIAALIADYAGL---APIPATRV 81 (389)
T ss_pred EEEcccccce-ecCCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEEecccccccccccHHHHHHHHcCC---CCCCeeEE
Confidence 3466665542 134678999999999999999999999999999998766442 46678899999998 46778999
Q ss_pred CCcChHHHHHHHHHHHHHHhCCCCCCEEEEEEeec
Q 012253 118 TNACYGGTAALFNCVNWVESASWDGRYGLVVCTDS 152 (467)
Q Consensus 118 ~~aC~gg~~AL~~A~~~l~a~~~~~~~aLVV~sD~ 152 (467)
.++|.+++.||..|..+|++|.. +.+||+++|.
T Consensus 82 ~~aCasg~~ai~~A~~~I~sG~~--~~vLv~G~e~ 114 (389)
T PRK06064 82 EAACASGGAALRQAYLAVASGEA--DVVLAAGVEK 114 (389)
T ss_pred eCCcHHHHHHHHHHHHHHHCCCC--CEEEEEEEEe
Confidence 99999999999999999999977 9999999985
|
|
| >PRK12404 stage V sporulation protein AD; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=3e-10 Score=111.62 Aligned_cols=181 Identities=14% Similarity=0.111 Sum_probs=117.1
Q ss_pred CCCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHhcccCCCCeeEEeeCCcChHHHHHHHHHHH
Q 012253 54 VEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAALFNCVN 133 (467)
Q Consensus 54 ~Ed~~~ma~~Aa~~aL~~agi~~~~Id~Li~~Tes~~~~~ps~a~~v~~~Lgl~G~~~~~~~di~~aC~gg~~AL~~A~~ 133 (467)
++...+|+.+|+++||+++|++++|||.+++|+-+.. ..| ++++++.||+ + .+++.+||+++..||.+|..
T Consensus 51 EkAE~~L~~EA~~~AL~kAGI~~~DID~i~vGdL~nQ-~ip--ssfvar~LGI---P---~~gV~gACSTg~eAL~lAa~ 121 (334)
T PRK12404 51 EKAERKLLEEACSRAIEKAKLRKEDIQFFLAGDLMNQ-ITP--TSFAARTLGI---P---YLGLFGACSTSMEGLALAAL 121 (334)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEEecCCC-cCc--HHHHHHHhCC---C---ccceeecCHHHHHHHHHHHH
Confidence 4556789999999999999999999999999998832 234 4599999886 4 48999999999999999999
Q ss_pred HHHhCCCCCCEEEEEEeecc-------cccCCC--CC-Ccc---ccceeEEEecCCCC-ceeecccccccccCccccccc
Q 012253 134 WVESASWDGRYGLVVCTDSA-------VYAEGP--AR-PTG---GAAAVAMLIGPDAP-IAFESKLRGSHMSHAYDFYKP 199 (467)
Q Consensus 134 ~l~a~~~~~~~aLVV~sD~~-------~y~~~~--~~-~t~---GdGAvA~Ll~~~~~-~~~~~~~~~~~~~~~~df~~p 199 (467)
+|++|.+ ++|||++|-=. ||.... -+ ||. =-||.|+||++... ..+ .+.-.-.+-|+-.-
T Consensus 122 ~VaSG~A--d~VLavtsSH~~~aErqfR~P~eyG~Qrp~taqwTvTgaga~~l~~~~~~~~i----~~~T~Gkv~D~g~~ 195 (334)
T PRK12404 122 IVNSGGA--KYVLTGASSHNAAVEKQFRYPTEYGGQKPPTAQWTVTGAGAAILSKTGDGPRV----TSATIGRVVDMGLT 195 (334)
T ss_pred HHHcCCC--CEEEEEeCcccchhhhhccCcccccCcCCCcccEEEEceEEEEEecCCCCceE----EEEEEEEEEecCCC
Confidence 9999977 99999987432 555321 12 111 34566788887642 111 11112223343221
Q ss_pred CCCCCCceecCcchHHHHHHHHH-HHHHHHHHHHHhhhcCCCCccccceeccCCchHHHHHHHHHhhh
Q 012253 200 NLASEYPVVDGKLSQTCYLMALD-SCYKYFCQKFEKLEGRQFSMLDVDYFVFHSPYNKLVQKSFARLF 266 (467)
Q Consensus 200 ~~~~~~~~vdG~~s~~~y~~a~~-~~~~~~~~~~~~~~~~~~~~~d~d~~i~H~p~~k~~~k~~~~l~ 266 (467)
++. .| | .++. .+++.+.+.+ .+.+..++|.|.++.- --.++.++++..|+
T Consensus 196 d~~----nM-G--------aaMAPAA~dti~~h~---~d~~~~~~~yDlI~TG-DLg~vG~~i~~~ll 246 (334)
T PRK12404 196 DPF----NM-G--------GAMAPAAVDTIEAHL---RDRQIDASYYDLIVTG-DLGHVGREIAKDLL 246 (334)
T ss_pred Ccc----cc-h--------hhhhHHHHHHHHHHH---HHhCCChhhccEEEEc-chHHHHHHHHHHHH
Confidence 110 01 1 1111 2222233332 3446889999998854 33455666666665
|
|
| >cd00751 thiolase Thiolase are ubiquitous enzymes that catalyze the reversible thiolytic cleavage of 3-ketoacyl-CoA into acyl-CoA and acetyl-CoA, a 2-step reaction involving a covalent intermediate formed with a catalytic cysteine | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.7e-11 Score=126.69 Aligned_cols=96 Identities=11% Similarity=0.135 Sum_probs=87.1
Q ss_pred CCCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHhcccCCCCeeEEeeCCcChHHHHHHHHHHH
Q 012253 54 VEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAALFNCVN 133 (467)
Q Consensus 54 ~Ed~~~ma~~Aa~~aL~~agi~~~~Id~Li~~Tes~~~~~ps~a~~v~~~Lgl~G~~~~~~~di~~aC~gg~~AL~~A~~ 133 (467)
+++..+|+.+|++++|+++|++++|||.|+++|.++....|..+..++..||+ ..++.++++.++|.+++.||..|..
T Consensus 19 ~~~~~~La~~A~~~AL~dAgl~~~dID~vi~~~~~~~~~~~~~a~~v~~~lGl--~~~~~~~~v~~~c~s~~~al~~A~~ 96 (386)
T cd00751 19 DVSADDLGAAVIKALLERAGLDPEEVDDVIMGNVLQAGEGQNPARQAALLAGL--PESVPATTVNRVCGSGLQAVALAAQ 96 (386)
T ss_pred CCCHHHHHHHHHHHHHHhcCCCHHHCCEEEEEeccCCCCCChHHHHHHHHcCC--CCCCchhhhccccHHHHHHHHHHHH
Confidence 58899999999999999999999999999999887766577788889999998 3457899999999999999999999
Q ss_pred HHHhCCCCCCEEEEEEeecc
Q 012253 134 WVESASWDGRYGLVVCTDSA 153 (467)
Q Consensus 134 ~l~a~~~~~~~aLVV~sD~~ 153 (467)
+|++|.. +.|||+++|.+
T Consensus 97 ~I~sG~~--~~vLv~g~e~~ 114 (386)
T cd00751 97 SIAAGEA--DVVVAGGVESM 114 (386)
T ss_pred HHHCCCC--CeEEEeeeecc
Confidence 9999977 99999999975
|
They are found in prokaryotes and eukaryotes (cytosol, microbodies and mitochondria). There are 2 functional different classes: thiolase-I (3-ketoacyl-CoA thiolase) and thiolase-II (acetoacetyl-CoA thiolase). Thiolase-I can cleave longer fatty acid molecules and plays an important role in the beta-oxidative degradation of fatty acids. Thiolase-II has a high substrate specificity. Although it can cleave acetoacyl-CoA, its main function is the synthesis of acetoacyl-CoA from two molecules of acetyl-CoA, which gives it importance in several biosynthetic pathways. |
| >TIGR01930 AcCoA-C-Actrans acetyl-CoA acetyltransferases | Back alignment and domain information |
|---|
Probab=99.23 E-value=4.4e-11 Score=123.60 Aligned_cols=96 Identities=14% Similarity=0.172 Sum_probs=86.8
Q ss_pred CCCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHhcccCCCCeeEEeeCCcChHHHHHHHHHHH
Q 012253 54 VEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAALFNCVN 133 (467)
Q Consensus 54 ~Ed~~~ma~~Aa~~aL~~agi~~~~Id~Li~~Tes~~~~~ps~a~~v~~~Lgl~G~~~~~~~di~~aC~gg~~AL~~A~~ 133 (467)
+++..+|+.+|+++||+++|++++|||.|+++|.++....|..+..++..+|+ ..++.++++.++|.+++.||..|..
T Consensus 18 ~~t~~~La~~A~~~Al~dAgl~~~dID~vv~g~~~~~~~~~~~a~~va~~lGl--~~~~~~~~v~~~Casg~~al~~A~~ 95 (386)
T TIGR01930 18 DVSAEDLGAAVIKELLERNPLDPELIDDVIFGNVLQAGEQQNIARQAALLAGL--PESVPAYTVNRQCASGLQAVILAAQ 95 (386)
T ss_pred CCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEEeccCCCCCChHHHHHHHHcCC--CCCceeeeecchhhHHHHHHHHHHH
Confidence 58899999999999999999999999999999887665557778889999998 3458899999999999999999999
Q ss_pred HHHhCCCCCCEEEEEEeecc
Q 012253 134 WVESASWDGRYGLVVCTDSA 153 (467)
Q Consensus 134 ~l~a~~~~~~~aLVV~sD~~ 153 (467)
+|++|.. +++||+++|..
T Consensus 96 ~I~sG~~--~~vLv~g~e~~ 113 (386)
T TIGR01930 96 LIRAGEA--DVVVAGGVESM 113 (386)
T ss_pred HHHCCCC--CEEEEEEehhh
Confidence 9999976 99999999975
|
This model represents a large family of enzymes which catalyze the thiolysis of a linear fatty acid CoA (or acetoacetyl-CoA) using a second CoA molecule to produce acetyl-CoA and a CoA-ester product two carbons shorter (or, alternatively, the condensation of two molecules of acetyl-CoA to produce acetoacetyl-CoA and CoA). This enzyme is also known as "thiolase", "3-ketoacyl-CoA thiolase", "beta-ketothiolase" and "Fatty oxidation complex beta subunit". When catalyzing the degradative reaction on fatty acids the corresponding EC number is 2.3.1.16. The condensation reaction corresponds to 2.3.1.9. Note that the enzymes which catalyze the condensation are generally not involved in fatty acid biosynthesis, which is carried out by a decarboxylating condensation of acetyl and malonyl esters of acyl carrier proteins. Rather, this activity may produce acetoacetyl-CoA for pathways such as IPP biosynthesis in the absence of sufficient fatt |
| >PRK12578 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=9.3e-11 Score=121.21 Aligned_cols=108 Identities=17% Similarity=0.152 Sum_probs=91.2
Q ss_pred EEeccceEeeccCCCCCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHhcccCCCCeeEEeeCC
Q 012253 40 TVGLGQDCMAFCSEVEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTN 119 (467)
Q Consensus 40 ~~Gig~r~~av~~~~Ed~~~ma~~Aa~~aL~~agi~~~~Id~Li~~Tes~~~~~ps~a~~v~~~Lgl~G~~~~~~~di~~ 119 (467)
..|+|+..+.- ..+++..+|+++|++++|+++|+++++||.||+++.++....+..+..++..+|+ ++..++++.+
T Consensus 5 IvG~g~t~~~~-~~~~~~~eLa~~A~~~AL~dAgi~~~dID~vi~g~~~~~~~~~~~a~~v~~~lGl---~~~~~~~v~~ 80 (385)
T PRK12578 5 VIGVGNSKFGR-RDDVSVQELAWESIKEALNDAGVSQTDIELVVVGSTAYRGIELYPAPIVAEYSGL---TGKVPLRVEA 80 (385)
T ss_pred EEeecccceee-cCCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEEecccccccCChHHHHHHHhCC---CCCCeeEEec
Confidence 46888776532 3578899999999999999999999999999999877643333447889999998 4456799999
Q ss_pred cChHHHHHHHHHHHHHHhCCCCCCEEEEEEeecc
Q 012253 120 ACYGGTAALFNCVNWVESASWDGRYGLVVCTDSA 153 (467)
Q Consensus 120 aC~gg~~AL~~A~~~l~a~~~~~~~aLVV~sD~~ 153 (467)
+|.+++.||..|...|++|.. ++||||++|.+
T Consensus 81 ~casg~~al~~A~~~I~sG~~--~~vLvvg~e~~ 112 (385)
T PRK12578 81 MCATGLAASLTAYTAVASGLV--DMAIAVGVDKM 112 (385)
T ss_pred cCHHHHHHHHHHHHHHHCCCC--CEEEEEEEeec
Confidence 999999999999999999976 99999999974
|
|
| >PRK08313 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.1e-10 Score=120.64 Aligned_cols=109 Identities=16% Similarity=0.086 Sum_probs=89.2
Q ss_pred eEEeccceEeeccCCCCCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEeccCCCCC--CcHHHHHHHHhcccCCCCeeEEe
Q 012253 39 YTVGLGQDCMAFCSEVEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKS--KSIKTFLMQIFEKYGNTDIEGVD 116 (467)
Q Consensus 39 ~~~Gig~r~~av~~~~Ed~~~ma~~Aa~~aL~~agi~~~~Id~Li~~Tes~~~~~--ps~a~~v~~~Lgl~G~~~~~~~d 116 (467)
+..|+|+..+....++++..+|+++|++++|+++|++++|||.|+++| ++.... ...+..|++.||+ ....+++
T Consensus 6 ~IvG~g~t~~~~~~~~~s~~eL~~eAa~~Al~dAgl~~~dID~iv~~~-~~~~~~~~~~~~~~va~~LGl---~~~~~~~ 81 (386)
T PRK08313 6 AVLGTGQTKYVAKRQDVSMAGLVREAIDRALADAGLTWDDIDAVVVGK-APDFFEGVMMPELFLADALGA---TGKPLIR 81 (386)
T ss_pred EEEEeecCCcCccCCCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEec-cccccccccCchHHHHHhcCC---CCCceEE
Confidence 346888776522235678999999999999999999999999999987 443321 1234689999998 5567899
Q ss_pred eCCcChHHHHHHHHHHHHHHhCCCCCCEEEEEEeecc
Q 012253 117 STNACYGGTAALFNCVNWVESASWDGRYGLVVCTDSA 153 (467)
Q Consensus 117 i~~aC~gg~~AL~~A~~~l~a~~~~~~~aLVV~sD~~ 153 (467)
+.++|.++..+++.|...|++|.+ ++||||++|..
T Consensus 82 v~~~casg~~al~~A~~~I~sG~~--~~vLVvg~e~~ 116 (386)
T PRK08313 82 VHTAGSVGGSTAVVAASLVQSGVY--RRVLAVAWEKQ 116 (386)
T ss_pred EeccCHHHHHHHHHHHHHHHCCCC--CEEEEEEEEEc
Confidence 999999999999999999999977 99999999853
|
|
| >PF08545 ACP_syn_III: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III; InterPro: IPR013751 Fatty acid synthesis (FAS) is a vital aspect of cellular physiology which can occur by two distinct pathways | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.5e-11 Score=96.97 Aligned_cols=61 Identities=25% Similarity=0.218 Sum_probs=50.3
Q ss_pred EeeCCcChHHHHHHHHHHHHHHhCCCCCCEEEEEEeecc-cccCCC---CCCccccceeEEEecCCC
Q 012253 115 VDSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDSA-VYAEGP---ARPTGGAAAVAMLIGPDA 177 (467)
Q Consensus 115 ~di~~aC~gg~~AL~~A~~~l~a~~~~~~~aLVV~sD~~-~y~~~~---~~~t~GdGAvA~Ll~~~~ 177 (467)
||++++|.|++.||++|..+|+++.. ++||||++|.. .+.++. ..+++||||+|+||++++
T Consensus 1 fDi~~~C~g~~~al~~A~~~i~~g~~--~~~Lvv~~d~~s~~~~~~~~~~~~~~gDgAaA~vl~~~~ 65 (80)
T PF08545_consen 1 FDINQACAGFLYALDVAAALIASGRA--KNALVVGGDRLSRIVDRTDRQTAFIFGDGAAAVVLSRDE 65 (80)
T ss_dssp EEEE-GGGHHHHHHHHHHHHHHTTS---SEEEEEEEEEGGGGSHTTHHHHHTTB-EEEEEEEEEEES
T ss_pred CcccccchHHHHHHHHHHHHHhhccC--CEEEEEeeccccccccccccCcceeecchheEEEEEecC
Confidence 79999999999999999999999965 99999999998 434332 346899999999999963
|
The FAS I pathway, which generally only produces palmitate, is found in eukaryotes and is performed either by a single polypeptide which contains all the reaction centres needed to form a fatty acid, or by two polypeptides which interact to form a multifunctional complex. The FAS II pathway, which is capable of producing many different fatty acids, is found in mitochondria, bacteria, plants and parasites, and is performed by many distinct proteins, each of which catalyses a single step within the pathway. The large diversity of products generated by this pathway is possible because the acyl carrier protein (ACP) intermediates are diffusible entities that can be diverted into other biosynthetic pathways []. 3-Oxoacyl-[acyl carrier protein (ACP)] synthase III catalyses the first condensation step within the FAS II pathway, using acetyl-CoA as the primer and malonyl-ACP as the acceptor, as shown below. |
| >PRK05656 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.6e-10 Score=119.75 Aligned_cols=111 Identities=12% Similarity=0.124 Sum_probs=92.4
Q ss_pred EEeccceEeecc---CCCCCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHhcccCCCCeeEEe
Q 012253 40 TVGLGQDCMAFC---SEVEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVD 116 (467)
Q Consensus 40 ~~Gig~r~~av~---~~~Ed~~~ma~~Aa~~aL~~agi~~~~Id~Li~~Tes~~~~~ps~a~~v~~~Lgl~G~~~~~~~d 116 (467)
..|.++..+.-. ..+++..+|+.+|++++|+++|++|++||.||+|+.++....+..+..++..+|+ +..+.+++
T Consensus 6 Ivg~~rTpfgk~~g~~~~~~~~~La~~A~~~AL~~agl~~~dID~vi~g~~~~~~~~~~~a~~va~~lGl--~~~~p~~~ 83 (393)
T PRK05656 6 IVAATRTAIGSFQGSLANIPAVELGAAVIRRLLEQTGLDPAQVDEVILGQVLTAGAGQNPARQAAIKAGL--PHSVPAMT 83 (393)
T ss_pred EEEcccCCccCCCCccCCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEEEecCCCCCCcHHHHHHHHcCC--CCCcceEE
Confidence 345555543211 1357899999999999999999999999999999988654456678889999998 33488999
Q ss_pred eCCcChHHHHHHHHHHHHHHhCCCCCCEEEEEEeeccc
Q 012253 117 STNACYGGTAALFNCVNWVESASWDGRYGLVVCTDSAV 154 (467)
Q Consensus 117 i~~aC~gg~~AL~~A~~~l~a~~~~~~~aLVV~sD~~~ 154 (467)
+.++|.+|+.|+..|..+|++|.. +.+||+++|.+.
T Consensus 84 V~~~Casg~~ai~~A~~~I~sG~~--d~vLv~G~E~ms 119 (393)
T PRK05656 84 LNKVCGSGLKALHLAAQAIRCGDA--EVIIAGGQENMS 119 (393)
T ss_pred ecccchhHHHHHHHHHHHHHcCCC--CEEEEEEEhhhc
Confidence 999999999999999999999976 999999999873
|
|
| >PRK06501 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.1e-08 Score=107.23 Aligned_cols=227 Identities=12% Similarity=0.041 Sum_probs=131.3
Q ss_pred ceeEEeEEEEecCCceeehhHHhhhh--CCC---c------CeeEEeccce-EeeccC----CCCCHHHHHHHHHHHHHH
Q 012253 7 KNVGILALDIYFPPTCVLQEALEVHD--GVS---K------GKYTVGLGQD-CMAFCS----EVEDVISMSLTVVTSLLE 70 (467)
Q Consensus 7 ~~vgI~ai~~y~P~~~v~~~el~~~~--g~~---~------~k~~~Gig~r-~~av~~----~~Ed~~~ma~~Aa~~aL~ 70 (467)
+.|.|.++|+..|--. +.+++.+.. |.+ + ..+...++-. .+ +.. .......|++.|++++|+
T Consensus 11 ~~VvITG~G~vs~~G~-~~~~~~~~L~~G~s~i~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~aa~~Al~ 88 (425)
T PRK06501 11 PIVAVTGMGVVTSLGQ-GKADNWAALTAGESGIHTITRFPTEGLRTRIAGTVDF-LPESPFGASALSEALARLAAEEALA 88 (425)
T ss_pred cCEEEEeeeEECCCCC-CHHHHHHHHHcCCCceEcCCcccccCCCCceEEEEee-cccccccccCHHHHHHHHHHHHHHH
Confidence 4699999999998754 666655542 221 1 1111101000 00 000 011245688999999999
Q ss_pred HcCCCcCCcC------------------EEEEEeccC---------------CC-------CCCcHHHHHHHHhcccCCC
Q 012253 71 KYKIDPTQIG------------------RLEVGSETV---------------ID-------KSKSIKTFLMQIFEKYGNT 110 (467)
Q Consensus 71 ~agi~~~~Id------------------~Li~~Tes~---------------~~-------~~ps~a~~v~~~Lgl~G~~ 110 (467)
++|+++.+++ .|+.++... .. ..++++..|+..||+.
T Consensus 89 dAgl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~~~gl~--- 165 (425)
T PRK06501 89 QAGIGKGDFPGPLFLAAPPVELEWPARFALAAAVGDNDAPSYDRLLRAARGGRFDALHERFQFGSIADRLADRFGTR--- 165 (425)
T ss_pred HcCCCccccccceeeccccccCCCCceEEEEEecCCccHHHHHHHHhhcCcccCChhhhhhcccHHHHHHHHHhCCC---
Confidence 9998644321 122222211 11 2356888999999972
Q ss_pred CeeEEeeCCcChHHHHHHHHHHHHHHhCCCCCCEEEEEEeecc----------------cccCC-----------CCCCc
Q 012253 111 DIEGVDSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDSA----------------VYAEG-----------PARPT 163 (467)
Q Consensus 111 ~~~~~di~~aC~gg~~AL~~A~~~l~a~~~~~~~aLVV~sD~~----------------~y~~~-----------~~~~t 163 (467)
..++++..+|++++.||..|.++|++|.+ +.+||+++|.. ...+. .+..+
T Consensus 166 -G~~~~i~~aCaS~~~Al~~A~~~I~~G~~--d~vlvgG~d~~~~~~~~~~~~~~~~ls~~~~~~~~~~rpfd~~r~G~v 242 (425)
T PRK06501 166 -GLPISLSTACASGATAIQLGVEAIRRGET--DRALCIATDGSVSAEALIRFSLLSALSTQNDPPEKASKPFSKDRDGFV 242 (425)
T ss_pred -CCceeecCccHHHHHHHHHHHHHHHcCCC--CEEEEeeecccCCHHHHHHHHHhhccccCCCCCCcccCCCCCCCCCee
Confidence 34689999999999999999999999977 99999999941 11111 01245
Q ss_pred cccceeEEEecCCCC-----ceeecccccccccCcccccccCCCCCCceecCcchHHHHHHHHHHHHHHHHHHHHhhhcC
Q 012253 164 GGAAAVAMLIGPDAP-----IAFESKLRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKYFCQKFEKLEGR 238 (467)
Q Consensus 164 ~GdGAvA~Ll~~~~~-----~~~~~~~~~~~~~~~~df~~p~~~~~~~~vdG~~s~~~y~~a~~~~~~~~~~~~~~~~~~ 238 (467)
+|+||+|+||++... ..+...+.++.... ..+.... +..++. .+..+.++.+ +.+
T Consensus 243 ~GEGaaalVLe~~~~A~~rg~~i~a~i~g~~~~~-d~~~~~~-----~~~~~~--------~~~~ai~~AL------~~a 302 (425)
T PRK06501 243 MAEGAGALVLESLESAVARGAKILGIVAGCGEKA-DSFHRTR-----SSPDGS--------PAIGAIRAAL------ADA 302 (425)
T ss_pred eeccEEEEEECcHHHHHHCCCeEEEEEEEEEEcc-CCCCCCC-----CCCCHH--------HHHHHHHHHH------HHc
Confidence 699999999997531 00110011111110 1111110 111221 1222322222 334
Q ss_pred CCCccccceeccCCchHHHHHHH
Q 012253 239 QFSMLDVDYFVFHSPYNKLVQKS 261 (467)
Q Consensus 239 ~~~~~d~d~~i~H~p~~k~~~k~ 261 (467)
++.++|||++..|-.+.......
T Consensus 303 gi~p~dId~i~~Hgtgt~~~d~~ 325 (425)
T PRK06501 303 GLTPEQIDYINAHGTSTPENDKM 325 (425)
T ss_pred CCCHHHcCEEEecCccCcchHHH
Confidence 78999999999999887765544
|
|
| >PF02797 Chal_sti_synt_C: Chalcone and stilbene synthases, C-terminal domain; InterPro: IPR012328 Synonym(s): Chalcone synthase, Flavonone synthase, 6'-deoxychalcone synthase Naringenin-chalcone synthases (2 | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.1e-10 Score=104.29 Aligned_cols=105 Identities=18% Similarity=0.276 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCCccccceeccCCchHHHHHHHHHhhhhhhhccccCchhhHHhhhcCCCCCCCcchhhh
Q 012253 219 MALDSCYKYFCQKFEKLEGRQFSMLDVDYFVFHSPYNKLVQKSFARLFFNDFLRNASSVDEIAKEKLAPYSTLSDVESYQ 298 (467)
Q Consensus 219 ~a~~~~~~~~~~~~~~~~~~~~~~~d~d~~i~H~p~~k~~~k~~~~l~~~~~~~~~~~~~~~~~~~l~~~~g~~~e~~~~ 298 (467)
+.+...+..++++ .++...|..+|++|.+..|+++.+.+.| ++++++
T Consensus 40 ~~i~~~~~~~L~~------~g~~~~~~~~wavHPGG~~ILd~v~~~L------------------------~L~~~~--- 86 (151)
T PF02797_consen 40 DNIPPFVEDLLAR------HGLSDWDILFWAVHPGGRKILDAVEEAL------------------------GLSPEQ--- 86 (151)
T ss_dssp HHHHHHHHHHHHG------GTCCSGGGSEEEEE-SSHHHHHHHHHHH------------------------TS-GGG---
T ss_pred HHHHHHHHHHHhh------hcccccccceeeecCChHHHHHHHHHHc------------------------CCCHHH---
Confidence 3455555555443 3455456678999999999999999888 666653
Q ss_pred hhhHHHHHHHHHHHHhhhhcCCCcccccccCccccchHHHHHHHHHhh---cCcCC---CCCEEEEEEeccccceeeEEE
Q 012253 299 SRDLEKASQQVAKQLYDLKVQPSTLIPKQVGNMYTASLYAAFASLLHE---KHSSL---EGKRVIMFSYGSGLTATMFSL 372 (467)
Q Consensus 299 ~~~~~k~~~~~~~~~~~~~~~~s~~~~~~~GN~~taS~~l~L~~~l~~---~~~~~---~G~~ill~syGsG~~~~~~~~ 372 (467)
+++|+.+.+++|||+|++++..|..++++ .+... .++++++++||+|++.+++++
T Consensus 87 -------------------l~~Sr~vLr~yGNmSSaTVlfVL~~~~~~~~~~g~~~~~~g~~~gv~~afGPG~t~E~~lL 147 (151)
T PF02797_consen 87 -------------------LRASREVLREYGNMSSATVLFVLERMRRKSAEEGAPPPGEGGEWGVMLAFGPGLTIEGMLL 147 (151)
T ss_dssp -------------------GHHHHHHHHHH-B-GGGHHHHHHHHHHHHHHHTTTSBTTTTBSEEEEEEEETTTEEEEEEE
T ss_pred -------------------HHHHHHHHHhcCCCCCcchHHHHHHHHhhhhhhcccCCCCCCCeEEEEEECCcceEeeEEE
Confidence 45667778999999999999999999883 12222 248999999999999999999
Q ss_pred EEe
Q 012253 373 QLQ 375 (467)
Q Consensus 373 ~~~ 375 (467)
+-.
T Consensus 148 r~~ 150 (151)
T PF02797_consen 148 RSV 150 (151)
T ss_dssp EE-
T ss_pred eeC
Confidence 854
|
3.1.74 from EC) and stilbene synthases (STS) (formerly known as resveratrol synthases) are related plant enzymes. CHS is an important enzyme in flavanoid biosynthesis and STS is a key enzyme in stilbene-type phyloalexin biosynthesis. Both enzymes catalyze the addition of three molecules of malonyl-CoA to a starter CoA ester (a typical example is 4-coumaroyl-CoA), producing either a chalcone (with CHS) or stilbene (with STS) []. These enzymes have a conserved cysteine residue, located in the central section of the protein sequence, which is essential for the catalytic activity of both enzymes and probably represents the binding site for the 4-coumaryl-CoA group []. This domain of chalcone synthase is reported to be structurally similar to domains in thiolase and beta-ketoacyl synthase. The differences in activity are accounted for by differences in the N-terminal domain. ; GO: 0016746 transferase activity, transferring acyl groups; PDB: 3OV2_A 3OV3_B 1Z1F_A 1Z1E_A 3ALE_C 3OIT_A 2H84_A 1TEE_D 1TED_A 2P0U_A .... |
| >cd00833 PKS polyketide synthases (PKSs) polymerize simple fatty acids into a large variety of different products, called polyketides, by successive decarboxylating Claisen condensations | Back alignment and domain information |
|---|
Probab=99.18 E-value=4e-10 Score=117.56 Aligned_cols=114 Identities=14% Similarity=0.106 Sum_probs=89.3
Q ss_pred HHHHHHHHHHHHHHHcCCCcCCcCE----EEEEeccCCC-------------------CCCcHHHHHHHHhcccCCCCee
Q 012253 57 VISMSLTVVTSLLEKYKIDPTQIGR----LEVGSETVID-------------------KSKSIKTFLMQIFEKYGNTDIE 113 (467)
Q Consensus 57 ~~~ma~~Aa~~aL~~agi~~~~Id~----Li~~Tes~~~-------------------~~ps~a~~v~~~Lgl~G~~~~~ 113 (467)
...|++.|++++|+++|+++++++. +++||.++.+ ..+..+..|...||+. ..
T Consensus 87 ~~~l~~~aa~~AL~dAgl~~~~~~~~~~gv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~~~gl~----g~ 162 (421)
T cd00833 87 QQRLLLEVAWEALEDAGYSPESLAGSRTGVFVGASSSDYLELLARDPDEIDAYAATGTSRAFLANRISYFFDLR----GP 162 (421)
T ss_pred HHHHHHHHHHHHHHHcCCCchhcCCCCceEEeCcCHHHHHHHHhhcccccCcccccCcchHHHHHHHHHHcCCC----CC
Confidence 4789999999999999999888775 7778765431 1134677899999872 25
Q ss_pred EEeeCCcChHHHHHHHHHHHHHHhCCCCCCEEEEEEeeccc-------c------------cCC---CCCCccccceeEE
Q 012253 114 GVDSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDSAV-------Y------------AEG---PARPTGGAAAVAM 171 (467)
Q Consensus 114 ~~di~~aC~gg~~AL~~A~~~l~a~~~~~~~aLVV~sD~~~-------y------------~~~---~~~~t~GdGAvA~ 171 (467)
++.+..+|++++.||..|..+|++|.+ +.+||+++|... + .+. .+..+.||||+|+
T Consensus 163 ~~~v~~acas~~~Al~~A~~~I~~G~~--d~~lvgg~~~~~~~~~~~~~~~~~~l~~~~~~~pf~~~~~g~~~geGAaal 240 (421)
T cd00833 163 SLTVDTACSSSLVALHLACQSLRSGEC--DLALVGGVNLILSPDMFVGFSKAGMLSPDGRCRPFDADADGYVRGEGVGVV 240 (421)
T ss_pred ceeeccHhHHHHHHHHHHHHHHHcCCC--CeeEEeeeeccCCHHHHHHHhhCCCCCCCCCCCCCCCCCCCeeeeceEEEE
Confidence 788889999999999999999999977 999999999741 0 001 1234579999999
Q ss_pred EecCC
Q 012253 172 LIGPD 176 (467)
Q Consensus 172 Ll~~~ 176 (467)
||++.
T Consensus 241 vL~~~ 245 (421)
T cd00833 241 VLKRL 245 (421)
T ss_pred EEeeH
Confidence 99875
|
PKSs can be divided into 2 groups, modular type I PKSs consisting of one or more large multifunctional proteins and iterative type II PKSs, complexes of several monofunctional subunits. |
| >PRK08235 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.5e-10 Score=118.19 Aligned_cols=97 Identities=7% Similarity=0.036 Sum_probs=84.7
Q ss_pred CCCCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHhcccCCCCeeEEeeCCcChHHHHHHHHHH
Q 012253 53 EVEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAALFNCV 132 (467)
Q Consensus 53 ~~Ed~~~ma~~Aa~~aL~~agi~~~~Id~Li~~Tes~~~~~ps~a~~v~~~Lgl~G~~~~~~~di~~aC~gg~~AL~~A~ 132 (467)
.+++..+|+.+|++++|+++|++|++||.||+|+.++.......+..++..+|+ +.++.++++.++|.+|..||..|.
T Consensus 22 ~~~~~~eLa~~A~~~aL~~agl~~~dID~vi~g~~~~~~~~~~~~~~~~~~~Gl--~~~~p~~~V~~~CaSg~~Al~~A~ 99 (393)
T PRK08235 22 KDVKATELGGIAIKEALERANVSAEDVEEVIMGTVLQGGQGQIPSRQAARAAGI--PWEVQTETVNKVCASGLRAVTLAD 99 (393)
T ss_pred CCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEEecccCCCCCCHHHHHHHHcCC--CCCcceeehhhhhhHHHHHHHHHH
Confidence 367899999999999999999999999999999987632233455577888887 457899999999999999999999
Q ss_pred HHHHhCCCCCCEEEEEEeecc
Q 012253 133 NWVESASWDGRYGLVVCTDSA 153 (467)
Q Consensus 133 ~~l~a~~~~~~~aLVV~sD~~ 153 (467)
.+|++|.. +.+||+++|.+
T Consensus 100 ~~I~sG~~--d~vLvvG~E~m 118 (393)
T PRK08235 100 QIIRAGDA--SVIVAGGMESM 118 (393)
T ss_pred HHHHCCCC--CEEEEEeeecc
Confidence 99999976 99999999976
|
|
| >PRK09051 beta-ketothiolase; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=3.5e-10 Score=117.07 Aligned_cols=97 Identities=13% Similarity=0.141 Sum_probs=84.5
Q ss_pred CCCCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEeccCCCCC-CcHHHHHHHHhcccCCCCeeEEeeCCcChHHHHHHHHH
Q 012253 53 EVEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKS-KSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAALFNC 131 (467)
Q Consensus 53 ~~Ed~~~ma~~Aa~~aL~~agi~~~~Id~Li~~Tes~~~~~-ps~a~~v~~~Lgl~G~~~~~~~di~~aC~gg~~AL~~A 131 (467)
.+++..+|+.+|++++|+++|++|++||.||+|+.++.... +..+..+...+|+ +.++.++++.++|.+|+.|+..|
T Consensus 23 ~~~~~~eL~~~A~~~AL~~agi~~~dID~vi~g~~~~~~~~~~~~a~~~~~~~Gl--~~~~p~~~V~~aCaSg~~Al~~A 100 (394)
T PRK09051 23 KDVAPTDLGATVVREALARAGVDPDQVGHVVFGHVIPTEPRDMYLSRVAAINAGV--PQETPAFNVNRLCGSGLQAIVSA 100 (394)
T ss_pred CCCCHHHHHHHHHHHHHHHcCCCHHHcCEEEEeeeccccCCCccHHHHHHHHcCC--CCCCceEEecccchHHHHHHHHH
Confidence 36789999999999999999999999999999998875533 3455566666677 44688999999999999999999
Q ss_pred HHHHHhCCCCCCEEEEEEeecc
Q 012253 132 VNWVESASWDGRYGLVVCTDSA 153 (467)
Q Consensus 132 ~~~l~a~~~~~~~aLVV~sD~~ 153 (467)
..+|++|.+ +.+||+++|.+
T Consensus 101 ~~~I~sG~~--d~vLvvG~E~m 120 (394)
T PRK09051 101 AQAILLGDA--DVAIGGGAESM 120 (394)
T ss_pred HHHHHcCCC--CEEEEEeehhc
Confidence 999999977 99999999976
|
|
| >cd00828 elong_cond_enzymes "elongating" condensing enzymes are a subclass of decarboxylating condensing enzymes, including beta-ketoacyl [ACP] synthase, type I and II and polyketide synthases | Back alignment and domain information |
|---|
Probab=99.11 E-value=4.4e-09 Score=109.44 Aligned_cols=116 Identities=13% Similarity=0.045 Sum_probs=86.1
Q ss_pred CHHHHHHHHHHHHHHHcCCCcCC-cC----EEEEEeccCC----------------------CCC--CcHHHHHHHHhcc
Q 012253 56 DVISMSLTVVTSLLEKYKIDPTQ-IG----RLEVGSETVI----------------------DKS--KSIKTFLMQIFEK 106 (467)
Q Consensus 56 d~~~ma~~Aa~~aL~~agi~~~~-Id----~Li~~Tes~~----------------------~~~--ps~a~~v~~~Lgl 106 (467)
....|++.|++++|+++|+++++ ++ .++++|..+. ... ..++..|...||+
T Consensus 71 ~~~~l~~~aa~~Al~dAGl~~~~~~~~~~~gv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~is~~~gl 150 (407)
T cd00828 71 RTTLLALVATEEALADAGITDPYEVHPSEVGVVVGSGMGGLRFLRRGGKLDARAVNPYVSPKWMLSPNTVAGWVNILLLS 150 (407)
T ss_pred HHHHHHHHHHHHHHHhCCCCccccCCccCeEEEEeeccCCHHHHHHHHHHHhhccCCcccchhccccchHHHHHHHHhCc
Confidence 45689999999999999998765 33 3555654321 111 4567789999887
Q ss_pred cCCCCeeEEeeCCcChHHHHHHHHHHHHHHhCCCCCCEEEEEEeeccc------cc-----------------CCC---C
Q 012253 107 YGNTDIEGVDSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDSAV------YA-----------------EGP---A 160 (467)
Q Consensus 107 ~G~~~~~~~di~~aC~gg~~AL~~A~~~l~a~~~~~~~aLVV~sD~~~------y~-----------------~~~---~ 160 (467)
.+-.++.+..+|++++.||..|.++|++|.. +.+||+++|... |. +.. +
T Consensus 151 ---~~Gp~~tv~~aCaS~~~Al~~A~~~I~~G~~--d~~lvgg~d~~~~~~~~~f~~~~~ls~~~~~~~~~~~pfd~~~~ 225 (407)
T cd00828 151 ---SHGPIKTPVGACATALEALDLAVEAIRSGKA--DIVVVGGVEDPLEEGLSGFANMGALSTAEEEPEEMSRPFDETRD 225 (407)
T ss_pred ---CCCCCcCcccHHHHHHHHHHHHHHHHHcCCC--CEEEEccccccChHHHHHHHHcCCCCCCCCCCCcccCCCcCCCC
Confidence 2345678899999999999999999999977 999999999752 10 000 1
Q ss_pred CCccccceeEEEecCC
Q 012253 161 RPTGGAAAVAMLIGPD 176 (467)
Q Consensus 161 ~~t~GdGAvA~Ll~~~ 176 (467)
-...|+||+|+||++.
T Consensus 226 G~~~gEGAaalvLe~~ 241 (407)
T cd00828 226 GFVEAEGAGVLVLERA 241 (407)
T ss_pred cEEeecceEEEEEeeH
Confidence 1345999999999975
|
They are characterized by the utlization of acyl carrier protein (ACP) thioesters as primer substrates, as well as the nature of their active site residues. |
| >PRK06059 lipid-transfer protein; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=4.7e-10 Score=116.53 Aligned_cols=107 Identities=15% Similarity=0.095 Sum_probs=89.4
Q ss_pred EEeccceEeeccCCCCCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEeccCCCC-CCcHHHHHHHHhcccCCCCeeEEeeC
Q 012253 40 TVGLGQDCMAFCSEVEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDK-SKSIKTFLMQIFEKYGNTDIEGVDST 118 (467)
Q Consensus 40 ~~Gig~r~~av~~~~Ed~~~ma~~Aa~~aL~~agi~~~~Id~Li~~Tes~~~~-~ps~a~~v~~~Lgl~G~~~~~~~di~ 118 (467)
..|.+...+. ...++..+|+++|++++|+++|+++++||.|++++..+... .+..+.+|++.||+ ..+.++++.
T Consensus 8 Ivg~~~t~~~--r~~~~~~~La~~A~~~Al~dAgl~~~dId~vi~~~~~~~~~~~~~~a~~va~~lG~---~~~~~~~v~ 82 (399)
T PRK06059 8 ILGAGMHPWG--KWGRDFVEYGVVAARAALADAGLDWRDVQLVVGADTIRNGYPGFVAGATFAQALGW---NGAPVSSSY 82 (399)
T ss_pred EEEecccccC--CCCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEEeccCCccCCccHHHHHHHHhCC---CCCceeccc
Confidence 3466655543 23577899999999999999999999999999887665433 34567899999997 557789999
Q ss_pred CcChHHHHHHHHHHHHHHhCCCCCCEEEEEEeecc
Q 012253 119 NACYGGTAALFNCVNWVESASWDGRYGLVVCTDSA 153 (467)
Q Consensus 119 ~aC~gg~~AL~~A~~~l~a~~~~~~~aLVV~sD~~ 153 (467)
++|.+++.||..|..+|++|.. +.+|||++|..
T Consensus 83 ~~Casg~~al~~A~~~I~sG~~--~~vLvvg~e~~ 115 (399)
T PRK06059 83 AACASGSQALQSARAQILAGLC--DVALVVGADTT 115 (399)
T ss_pred chhHHHHHHHHHHHHHHHCCCC--CEEEEEEEccc
Confidence 9999999999999999999976 99999999975
|
|
| >PRK06205 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=3e-10 Score=118.07 Aligned_cols=96 Identities=17% Similarity=0.186 Sum_probs=88.6
Q ss_pred CCCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHhcccCCCCeeEEeeCCcChHHHHHHHHHHH
Q 012253 54 VEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAALFNCVN 133 (467)
Q Consensus 54 ~Ed~~~ma~~Aa~~aL~~agi~~~~Id~Li~~Tes~~~~~ps~a~~v~~~Lgl~G~~~~~~~di~~aC~gg~~AL~~A~~ 133 (467)
+++..+|+.+|++++|+++++++++||.|++|+.++....+.++..++..+|+ +.++.++++.++|.+|+.||..|..
T Consensus 23 ~~~~~eLa~~A~~~AL~~agl~~~dID~vv~g~~~~~~~~~~~a~~va~~~Gl--~~~~p~~~V~~~CaSg~~Al~~A~~ 100 (404)
T PRK06205 23 DVPAEELAATVIRALVERTGIDPARIDDVIFGQGYPNGEAPAIGRVAALDAGL--PVTVPGMQLDRRCGSGLQAVITAAM 100 (404)
T ss_pred CCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEEeccCCCCCChHHHHHHHHcCC--CCCCceeehhhhhhHHHHHHHHHHH
Confidence 57899999999999999999999999999999998877778888889999997 4468899999999999999999999
Q ss_pred HHHhCCCCCCEEEEEEeecc
Q 012253 134 WVESASWDGRYGLVVCTDSA 153 (467)
Q Consensus 134 ~l~a~~~~~~~aLVV~sD~~ 153 (467)
+|++|.+ +.+||+++|..
T Consensus 101 ~I~sG~~--d~vLv~G~E~m 118 (404)
T PRK06205 101 QVQTGAA--DVVIAGGAESM 118 (404)
T ss_pred HHHcCCC--CEEEEeeehhh
Confidence 9999977 99999999976
|
|
| >PRK07108 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=3.7e-10 Score=116.83 Aligned_cols=98 Identities=13% Similarity=0.148 Sum_probs=88.4
Q ss_pred CCCCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEeccCCCCCCc-HHHHHHHHhcccCCCCeeEEeeCCcChHHHHHHHHH
Q 012253 53 EVEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKS-IKTFLMQIFEKYGNTDIEGVDSTNACYGGTAALFNC 131 (467)
Q Consensus 53 ~~Ed~~~ma~~Aa~~aL~~agi~~~~Id~Li~~Tes~~~~~ps-~a~~v~~~Lgl~G~~~~~~~di~~aC~gg~~AL~~A 131 (467)
.++++.+|+..|++++|+++|++|++||.||+|+.++....++ ++..+...+|+ +.++.++++.++|.+|..||.+|
T Consensus 23 ~~~~~~dL~~~A~~~aL~~agi~~~~ID~vi~G~~~~~~~~~~~~a~~i~~~lGl--~~~~p~~~V~~aCaSg~~Al~~A 100 (392)
T PRK07108 23 NMTHGATLGGHVVQHAVERAKLDPAEVEDVIMGCANPEGATGANIARQIALRAGL--PVTVPGMTVNRFCSSGLQTIALA 100 (392)
T ss_pred CCCCHHHHHHHHHHHHHHHcCCCHHHCCcEEEEEeecccccccHHHHHHHHHcCC--CCCCceeeecchhhHHHHHHHHH
Confidence 4677899999999999999999999999999999887765555 78888888888 45699999999999999999999
Q ss_pred HHHHHhCCCCCCEEEEEEeeccc
Q 012253 132 VNWVESASWDGRYGLVVCTDSAV 154 (467)
Q Consensus 132 ~~~l~a~~~~~~~aLVV~sD~~~ 154 (467)
...|++|.+ +.+||++.|.+.
T Consensus 101 ~~~I~sG~~--d~vlagGvE~ms 121 (392)
T PRK07108 101 AQRVIAGEG--DVFVAGGVESIS 121 (392)
T ss_pred HHHHHCCCC--CEEEEEEEeccC
Confidence 999999976 999999999884
|
|
| >TIGR03150 fabF beta-ketoacyl-acyl-carrier-protein synthase II | Back alignment and domain information |
|---|
Probab=99.10 E-value=7.9e-09 Score=107.50 Aligned_cols=114 Identities=14% Similarity=0.101 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHHHHHcCCCcCCcCE----EEEEeccCCC-----------------CC---------CcHHHHHHHHhcc
Q 012253 57 VISMSLTVVTSLLEKYKIDPTQIGR----LEVGSETVID-----------------KS---------KSIKTFLMQIFEK 106 (467)
Q Consensus 57 ~~~ma~~Aa~~aL~~agi~~~~Id~----Li~~Tes~~~-----------------~~---------ps~a~~v~~~Lgl 106 (467)
...|++.|++++|+++|+++++||. ++++|..+.. .. -..+.+|...||+
T Consensus 71 ~~~l~~~aa~~Al~dAgl~~~~~~~~~~gv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~is~~~gl 150 (407)
T TIGR03150 71 FIQYALAAAKEAVEDSGLDIEEEDAERVGVIIGSGIGGLETIEEQHIVLLEKGPRRVSPFFIPMSIINMAAGQISIRYGA 150 (407)
T ss_pred HHHHHHHHHHHHHHhcCCCcccCCccceEEEEecCCCchHHHHHHHHHHHhcCccccChhhhhcccccHHHHHHHHHhCC
Confidence 3679999999999999999998886 7777643210 00 1245678888887
Q ss_pred cCCCCeeEEeeCCcChHHHHHHHHHHHHHHhCCCCCCEEEEEEeeccc----------------ccCCC-----------
Q 012253 107 YGNTDIEGVDSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDSAV----------------YAEGP----------- 159 (467)
Q Consensus 107 ~G~~~~~~~di~~aC~gg~~AL~~A~~~l~a~~~~~~~aLVV~sD~~~----------------y~~~~----------- 159 (467)
. ..++.+..+|++++.||..|..+|++|.. +.+||+++|... +...+
T Consensus 151 ~----g~~~~v~~acaSg~~Al~~A~~~I~~G~~--d~~lvgg~e~~~~~~~~~~~~~~~~ls~~~~~~~~~~~pfd~~~ 224 (407)
T TIGR03150 151 K----GPNHAVVTACATGTHAIGDAFRLIQRGDA--DVMIAGGAEAAITPLGIAGFAAMKALSTRNDDPEKASRPFDKDR 224 (407)
T ss_pred C----CcccccccHHHHHHHHHHHHHHHHhcCCC--CEEEEecccCcCCHHHHHHHHHhCcccCCCCCCCcCCCCCcCCC
Confidence 3 23566678999999999999999999976 999999999620 11100
Q ss_pred CCCccccceeEEEecCC
Q 012253 160 ARPTGGAAAVAMLIGPD 176 (467)
Q Consensus 160 ~~~t~GdGAvA~Ll~~~ 176 (467)
+..+.||||+|+||.+.
T Consensus 225 ~g~~~gEGAaalvL~~~ 241 (407)
T TIGR03150 225 DGFVMGEGAGVLVLEEL 241 (407)
T ss_pred CcEEEeceEEEEEEeeH
Confidence 12345999999999875
|
FabB sequences should fall well below the noise cutoff of this model. |
| >PRK05790 putative acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=7.7e-10 Score=114.71 Aligned_cols=110 Identities=10% Similarity=0.104 Sum_probs=88.2
Q ss_pred EEeccceEeeccC---CCCCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHhcccCCCCeeEEe
Q 012253 40 TVGLGQDCMAFCS---EVEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVD 116 (467)
Q Consensus 40 ~~Gig~r~~av~~---~~Ed~~~ma~~Aa~~aL~~agi~~~~Id~Li~~Tes~~~~~ps~a~~v~~~Lgl~G~~~~~~~d 116 (467)
..|.++..+.-.. .+++..+|+++|++++|+++|++++|||.|++++.++....+..+..++..+|+ ..++.+++
T Consensus 6 IvG~~~tp~~r~~g~~~~~~~~~La~~A~~~AL~dAgl~~~dID~vi~g~~~~~~~~~~~~~~~~~~~gl--~~~~~~~~ 83 (393)
T PRK05790 6 IVSAARTPIGKFGGALKDVSAVELGAIVIKAALERAGVPPEQVDEVIMGQVLQAGAGQNPARQAALKAGL--PVEVPALT 83 (393)
T ss_pred EEeeecCCccCCCCCCCCCCHHHHHHHHHHHHHHHcCCCHHHCCeEEEEEecCCCCCCcHHHHHHHHcCC--CCCCceee
Confidence 3466655543211 258899999999999999999999999999999876543334445556667776 33578999
Q ss_pred eCCcChHHHHHHHHHHHHHHhCCCCCCEEEEEEeecc
Q 012253 117 STNACYGGTAALFNCVNWVESASWDGRYGLVVCTDSA 153 (467)
Q Consensus 117 i~~aC~gg~~AL~~A~~~l~a~~~~~~~aLVV~sD~~ 153 (467)
+.++|.+++.||..|..+|++|.. +.+||+++|..
T Consensus 84 v~~~Casg~~al~~A~~~I~sG~~--d~vLv~G~e~~ 118 (393)
T PRK05790 84 INKVCGSGLKAVALAAQAIRAGDA--DIVVAGGQESM 118 (393)
T ss_pred ecccchHHHHHHHHHHHHHHcCCC--CEEEEEeeecc
Confidence 999999999999999999999977 99999999975
|
|
| >PRK09052 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=6.6e-10 Score=115.17 Aligned_cols=96 Identities=14% Similarity=0.099 Sum_probs=83.1
Q ss_pred CCCHHHHHHHHHHHHHHHc-CCCcCCcCEEEEEeccCCCCCCcHHHHHH-HHhcccCCCCeeEEeeCCcChHHHHHHHHH
Q 012253 54 VEDVISMSLTVVTSLLEKY-KIDPTQIGRLEVGSETVIDKSKSIKTFLM-QIFEKYGNTDIEGVDSTNACYGGTAALFNC 131 (467)
Q Consensus 54 ~Ed~~~ma~~Aa~~aL~~a-gi~~~~Id~Li~~Tes~~~~~ps~a~~v~-~~Lgl~G~~~~~~~di~~aC~gg~~AL~~A 131 (467)
+++..+|+.+|++++|+++ |+++++||.||+|+.++....+.....+. ..+|+ +..+.+++|.++|.+|+.|+..|
T Consensus 28 ~~s~~eLa~~A~~~AL~~a~gl~~~dID~vi~g~~~~~~~~~~~~ar~~~~~~Gl--~~~~p~~~V~~aCaSg~~Al~~A 105 (399)
T PRK09052 28 NTRPDDLLAHVLRSAVAQVPGLDPKLIEDAIVGCAMPEAEQGLNVARIGALLAGL--PNSVGGVTVNRFCASGLQAVAMA 105 (399)
T ss_pred CCCHHHHHHHHHHHHHHhccCcCHHHCCEEEEEecCCCCCCCchHHHHHHHHcCC--CCCCceeeecchhhHHHHHHHHH
Confidence 5789999999999999997 99999999999998887655555566654 44476 33588999999999999999999
Q ss_pred HHHHHhCCCCCCEEEEEEeecc
Q 012253 132 VNWVESASWDGRYGLVVCTDSA 153 (467)
Q Consensus 132 ~~~l~a~~~~~~~aLVV~sD~~ 153 (467)
..+|++|.+ +.+||+++|.+
T Consensus 106 ~~~I~sG~~--d~vLv~G~E~m 125 (399)
T PRK09052 106 ADRIRVGEA--DVMIAAGVESM 125 (399)
T ss_pred HHHHHCCCC--CEEEEEEEecc
Confidence 999999976 99999999976
|
|
| >PRK08170 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.2e-09 Score=114.20 Aligned_cols=96 Identities=10% Similarity=0.119 Sum_probs=85.7
Q ss_pred CCCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHhcccCCCCeeEEeeCCcChHHHHHHHHHHH
Q 012253 54 VEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAALFNCVN 133 (467)
Q Consensus 54 ~Ed~~~ma~~Aa~~aL~~agi~~~~Id~Li~~Tes~~~~~ps~a~~v~~~Lgl~G~~~~~~~di~~aC~gg~~AL~~A~~ 133 (467)
+.+..+|+.+|++++|+++|+++++||.||+++.++....+..+..++..+|+ ..++.++++.++|++++.||..|..
T Consensus 24 ~~~~~~L~~~A~~~Al~dAgl~~~dID~vi~g~~~~~~~~~~~a~~v~~~lGl--~~~~p~~~v~~~CaSg~~al~~A~~ 101 (426)
T PRK08170 24 PFSASDLAVAAGRALLNRQPFAPDDLDEVILGCAMPSPDEANIARVVALRLGC--GEKVPAWTVQRNCASGMQALDSAAA 101 (426)
T ss_pred CCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEEeccCCCCcChHHHHHHHHhCc--CCCceeeeccchhhHHHHHHHHHHH
Confidence 46899999999999999999999999999999877544456777889999998 4568899999999999999999999
Q ss_pred HHHhCCCCCCEEEEEEeecc
Q 012253 134 WVESASWDGRYGLVVCTDSA 153 (467)
Q Consensus 134 ~l~a~~~~~~~aLVV~sD~~ 153 (467)
.|++|.. +.+||+++|.+
T Consensus 102 ~I~sG~~--d~vLv~G~E~m 119 (426)
T PRK08170 102 NIALGRA--DLVLAGGVEAM 119 (426)
T ss_pred HHHCCCC--CEEEEEEEecc
Confidence 9999976 99999999975
|
|
| >PRK08242 acetyl-CoA acetyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.05 E-value=9.9e-10 Score=113.71 Aligned_cols=97 Identities=13% Similarity=0.141 Sum_probs=84.5
Q ss_pred CCCCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEeccCCCCC-CcHHHHHHHHhcccCCCCeeEEeeCCcChHHHHHHHHH
Q 012253 53 EVEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKS-KSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAALFNC 131 (467)
Q Consensus 53 ~~Ed~~~ma~~Aa~~aL~~agi~~~~Id~Li~~Tes~~~~~-ps~a~~v~~~Lgl~G~~~~~~~di~~aC~gg~~AL~~A 131 (467)
.+.++.+|+..|++++|++++++|++||.||+|+.++.... ...+......+|+ +.++.+++|+++|.+|+.||.+|
T Consensus 24 ~~~~~~dLa~~A~~~al~~agi~p~~ID~vi~G~~~~~~~~~~~~~r~a~~~~Gl--~~~~pa~~Vn~aCaSg~~Ai~~A 101 (402)
T PRK08242 24 HEVKPVRLAAGLLEALRDRNGLDTAAVDDVVLGCVTPVGDQGADIARTAVLAAGL--PETVPGVQINRFCASGLEAVNLA 101 (402)
T ss_pred CCCCHHHHHHHHHHHHHHHcCCCHHHcCEEEEEecCCCccccccHHHHHHHHcCC--CCCCCeEEEcchhhhHHHHHHHH
Confidence 35678999999999999999999999999999999875432 3355556677777 56799999999999999999999
Q ss_pred HHHHHhCCCCCCEEEEEEeecc
Q 012253 132 VNWVESASWDGRYGLVVCTDSA 153 (467)
Q Consensus 132 ~~~l~a~~~~~~~aLVV~sD~~ 153 (467)
..+|++|.. +.+||+++|.+
T Consensus 102 ~~~I~sG~~--d~vLv~G~E~m 121 (402)
T PRK08242 102 AAKVRSGWD--DLVIAGGVESM 121 (402)
T ss_pred HHHHHcCCC--CEEEEEEEEcc
Confidence 999999976 99999999987
|
|
| >PRK06065 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.9e-09 Score=111.49 Aligned_cols=107 Identities=12% Similarity=0.038 Sum_probs=89.8
Q ss_pred eEEeccceEeeccCCCCCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEeccCCC--CCCcHHHHHHHHhcccCCCCeeEEe
Q 012253 39 YTVGLGQDCMAFCSEVEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVID--KSKSIKTFLMQIFEKYGNTDIEGVD 116 (467)
Q Consensus 39 ~~~Gig~r~~av~~~~Ed~~~ma~~Aa~~aL~~agi~~~~Id~Li~~Tes~~~--~~ps~a~~v~~~Lgl~G~~~~~~~d 116 (467)
+..|+|+..+.- ..+++..+|+.+|++++|+++|++++|||.+++++. +.. ..+..+..+++.||+ ....+++
T Consensus 12 aIvG~g~t~~~~-~~~~~~~~L~~~A~~~Al~dagl~~~dID~~i~~~~-~~~~~~~~~~a~~l~~~lG~---~~~~~~~ 86 (392)
T PRK06065 12 AVIGAGLTLFRR-RLLETPQELAWEAASKALDEAGLELKDIDCVVIGSA-PDAFDGVHMKGEYLSHGSGG---IRKPVSR 86 (392)
T ss_pred EEEEecccCCcC-CCCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEecc-CCcccccccHHHHHHHHcCC---CCCCeEE
Confidence 457888877543 356889999999999999999999999999999863 222 245678889999987 3466889
Q ss_pred eCCcChHHHHHHHHHHHHHHhCCCCCCEEEEEEeec
Q 012253 117 STNACYGGTAALFNCVNWVESASWDGRYGLVVCTDS 152 (467)
Q Consensus 117 i~~aC~gg~~AL~~A~~~l~a~~~~~~~aLVV~sD~ 152 (467)
+.++|+++..||..|...|++|.. +.||||++|.
T Consensus 87 V~~~gasG~~al~~A~~~I~sG~a--d~vLVvg~e~ 120 (392)
T PRK06065 87 VYVGGATGVMTAIAGWYHVASGLC--QKVLAVAEEK 120 (392)
T ss_pred EecCchhHHHHHHHHHHHHhCCCC--CEEEEEEeec
Confidence 999999999999999999999977 9999999886
|
|
| >cd00826 nondecarbox_cond_enzymes nondecarboxylating condensing enzymes; In general, thiolases catalyze the reversible thiolytic cleavage of 3-ketoacyl-CoA into acyl-CoA and acetyl-CoA, a 2-step reaction involving a covalent intermediate formed with a catalytic cysteine | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.9e-09 Score=111.73 Aligned_cols=95 Identities=11% Similarity=0.056 Sum_probs=82.9
Q ss_pred CCCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEeccCCCCCCcHHH-HHHHHhcccCCCCeeEEeeCCcChHHHHHHHHHH
Q 012253 54 VEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKT-FLMQIFEKYGNTDIEGVDSTNACYGGTAALFNCV 132 (467)
Q Consensus 54 ~Ed~~~ma~~Aa~~aL~~agi~~~~Id~Li~~Tes~~~~~ps~a~-~v~~~Lgl~G~~~~~~~di~~aC~gg~~AL~~A~ 132 (467)
.+.+.+|+.+|++++|++++++|++||.||+++.++....+..+. .+++.+|+ .++.++++.++|++|+.||..|.
T Consensus 20 ~~~~~el~~~a~~~Al~~agl~p~dID~vi~g~~~~~~~g~~~~~~~~~~~lg~---~~~p~~~V~~~Casg~~al~~A~ 96 (393)
T cd00826 20 NDLAHEAGAKAIAAALEPAGVAAGAVEEACLGQVLGAGEGQNCAQQAAMHAGGL---QEAPAIGMNNLCGSGLRALALAM 96 (393)
T ss_pred CCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEEEccCCcccCcHHHHHHHHcCCC---CCCcEEEecchhHHHHHHHHHHH
Confidence 466799999999999999999999999999999887654445554 36777665 67889999999999999999999
Q ss_pred HHHHhCCCCCCEEEEEEeecc
Q 012253 133 NWVESASWDGRYGLVVCTDSA 153 (467)
Q Consensus 133 ~~l~a~~~~~~~aLVV~sD~~ 153 (467)
.+|++|.. +.+||+++|..
T Consensus 97 ~~I~sG~~--~~vlv~g~e~~ 115 (393)
T cd00826 97 QLIAGGDA--NCILAGGFEKM 115 (393)
T ss_pred HHHHCCCC--CEEEEEeeecc
Confidence 99999976 99999999986
|
There are 2 functional different classes: thiolase-I (3-ketoacyl-CoA thiolase) and thiolase-II (acetoacetyl-CoA thiolase). Thiolase-I can cleave longer fatty acid molecules and plays an important role in the beta-oxidative degradation of fatty acids. Thiolase-II has a high substrate specificity. Although it can cleave acetoacyl-CoA, its main function is the synthesis of acetoacyl-CoA from two molecules of acetyl-CoA, which gives it importance in several biosynthetic pathways. |
| >PRK06954 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=3.4e-09 Score=109.96 Aligned_cols=96 Identities=11% Similarity=0.115 Sum_probs=80.5
Q ss_pred CCCCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHhcccC-CCCeeEEeeCCcChHHHHHHHHH
Q 012253 53 EVEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYG-NTDIEGVDSTNACYGGTAALFNC 131 (467)
Q Consensus 53 ~~Ed~~~ma~~Aa~~aL~~agi~~~~Id~Li~~Tes~~~~~ps~a~~v~~~Lgl~G-~~~~~~~di~~aC~gg~~AL~~A 131 (467)
.+.++.+|+.+|++++|+++|++|++||.+|+|+..+... +.....+..+++ | +.++.++++.++|++|+.|+..|
T Consensus 27 ~~~~~~eL~~~a~~~aL~~Agi~~~dID~vi~G~~~~~~~--~~~~~~~~~l~a-g~~~~~p~~~V~~aCaSG~~Av~~A 103 (397)
T PRK06954 27 ASLTAPQLGAAAIAAAVERAGLKPEQIDEVVMGCVLPAGQ--GQAPARQAALGA-GLPLSVGCTTVNKMCGSGMRAAMFA 103 (397)
T ss_pred CCCCHHHHHHHHHHHHHHHcCCCHHHcCEEEEEecCCCcc--chHHHHHHHHcC-CCCCCccEeeccccchHHHHHHHHH
Confidence 3567899999999999999999999999999998776543 333334445554 3 33589999999999999999999
Q ss_pred HHHHHhCCCCCCEEEEEEeecc
Q 012253 132 VNWVESASWDGRYGLVVCTDSA 153 (467)
Q Consensus 132 ~~~l~a~~~~~~~aLVV~sD~~ 153 (467)
..+|++|.+ +.+||+++|.+
T Consensus 104 ~~~I~sG~~--d~vLv~G~E~m 123 (397)
T PRK06954 104 HDMLVAGSV--DVIVAGGMESM 123 (397)
T ss_pred HHHHHCCCC--CEEEEEeeecc
Confidence 999999976 99999999977
|
|
| >PRK06158 thiolase; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=4.2e-09 Score=108.86 Aligned_cols=101 Identities=10% Similarity=-0.034 Sum_probs=84.5
Q ss_pred eEEeccceEeeccCCCCCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHhcccCCCCeeEEeeC
Q 012253 39 YTVGLGQDCMAFCSEVEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDST 118 (467)
Q Consensus 39 ~~~Gig~r~~av~~~~Ed~~~ma~~Aa~~aL~~agi~~~~Id~Li~~Tes~~~~~ps~a~~v~~~Lgl~G~~~~~~~di~ 118 (467)
+..|+|+..+.- .++++..+|+.+|++++|+++|++++|||.|++++.. +..|+ ..|++.||+ +....+++.
T Consensus 11 aIvG~g~t~~~~-~~~~t~~eL~~eA~~~Al~dAgl~~~dID~iv~~~~~--~~~~~--~~la~~lGl---~~~~~~~~~ 82 (384)
T PRK06158 11 AIVGAATAGLGE-APGLSAMELLAQAAHRALADAGLTMADVDGLFTASPD--DALWG--LSVAEYLGI---RPRFVDGTM 82 (384)
T ss_pred EEEEeeecccee-CCCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEecCC--CCCcH--HHHHHHcCC---CCeeecccc
Confidence 456888876532 3578899999999999999999999999999998743 22343 579999998 556778888
Q ss_pred CcChHHHHHHHHHHHHHHhCCCCCCEEEEEE
Q 012253 119 NACYGGTAALFNCVNWVESASWDGRYGLVVC 149 (467)
Q Consensus 119 ~aC~gg~~AL~~A~~~l~a~~~~~~~aLVV~ 149 (467)
.+|.++..+|..|...|++|.+ ++|||+.
T Consensus 83 ~g~~s~~~al~~A~~~I~sG~~--d~vLV~~ 111 (384)
T PRK06158 83 IGGSSFLAHLLPAALALEAGLC--DVALICY 111 (384)
T ss_pred CccHHHHHHHHHHHHHHHcCCC--CEEEEee
Confidence 9999999999999999999977 9999983
|
|
| >PRK07103 polyketide beta-ketoacyl:acyl carrier protein synthase; Validated | Back alignment and domain information |
|---|
Probab=98.95 E-value=3.9e-08 Score=102.55 Aligned_cols=90 Identities=19% Similarity=0.176 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHHHHHcCCC---cCCcCEEEEEecc---------------CCCCCC---------cHHHHHHHHhcccCC
Q 012253 57 VISMSLTVVTSLLEKYKID---PTQIGRLEVGSET---------------VIDKSK---------SIKTFLMQIFEKYGN 109 (467)
Q Consensus 57 ~~~ma~~Aa~~aL~~agi~---~~~Id~Li~~Tes---------------~~~~~p---------s~a~~v~~~Lgl~G~ 109 (467)
...|++.|++++|+++|++ +++|+.++.++.. +....| ..+..|...||+.|
T Consensus 80 ~~~lal~Aa~eAl~dAgl~~~~~~riGvivG~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~ia~~lgl~G- 158 (410)
T PRK07103 80 SAQAALAAAREAWRDAALGPVDPDRIGLVVGGSNLQQREQALVHETYRDRPAFLRPSYGLSFMDTDLVGLCSEQFGIRG- 158 (410)
T ss_pred HHHHHHHHHHHHHHhcCcCCCCCCCEEEEEccCCcchHHHHHHHHHhccCccccChhhhhhhcchHHHHHHHHHhCCCC-
Confidence 5679999999999999986 4566665543321 111112 25567888998733
Q ss_pred CCeeEEeeCCcChHHHHHHHHHHHHHHhCCCCCCEEEEEEeec
Q 012253 110 TDIEGVDSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDS 152 (467)
Q Consensus 110 ~~~~~~di~~aC~gg~~AL~~A~~~l~a~~~~~~~aLVV~sD~ 152 (467)
.++.+..+|++++.||..|..+|++|.. +.+||+++|.
T Consensus 159 ---~~~tv~~acas~~~Al~~A~~~I~~G~~--d~~lv~g~~~ 196 (410)
T PRK07103 159 ---EGFTVGGASASGQLAVIQAARLVQSGSV--DACIAVGALM 196 (410)
T ss_pred ---CcccccchhHHHHHHHHHHHHHHHcCCC--CEEEEecccc
Confidence 3566889999999999999999999977 8999999874
|
|
| >PRK06289 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=6.1e-09 Score=108.36 Aligned_cols=94 Identities=17% Similarity=0.163 Sum_probs=76.5
Q ss_pred CCCCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEeccCCCCC-----CcHHHHHHHHhcccCCCCeeEEeeCCcChHHHHH
Q 012253 53 EVEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKS-----KSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAA 127 (467)
Q Consensus 53 ~~Ed~~~ma~~Aa~~aL~~agi~~~~Id~Li~~Tes~~~~~-----ps~a~~v~~~Lgl~G~~~~~~~di~~aC~gg~~A 127 (467)
.+++..+|+++|++++|+++|+++++||.+|++|++++... ++....+ ..++ ..+.++++.++|.+++.|
T Consensus 22 ~~~s~~eLa~eA~~~AL~dAgl~~~dID~vi~g~~~~~~~~~~~~~~~~~~~~--~~~~---~g~~~~~v~~~Casg~~a 96 (403)
T PRK06289 22 EGRDFADLTREVVDGTLAAAGVDADDIEVVHVGNFFGELFAGQGHLGAMPATV--HPAL---WGVPASRHEAACASGSVA 96 (403)
T ss_pred CCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEEeccccccccccccchHHHHH--hhcC---CCCceeecccccHHHHHH
Confidence 57889999999999999999999999999999988765322 1111211 2233 345689999999999999
Q ss_pred HHHHHHHHHhCCCCCCEEEEEEeecc
Q 012253 128 LFNCVNWVESASWDGRYGLVVCTDSA 153 (467)
Q Consensus 128 L~~A~~~l~a~~~~~~~aLVV~sD~~ 153 (467)
|..|..+|++|.+ ++||||++|..
T Consensus 97 l~~Aa~~I~sG~~--~~VLvvg~e~~ 120 (403)
T PRK06289 97 TLAAMADLRAGRY--DVALVVGVELM 120 (403)
T ss_pred HHHHHHHHHcCCC--CEEEEEEEEec
Confidence 9999999999977 99999998874
|
|
| >PRK07516 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=8e-09 Score=106.99 Aligned_cols=109 Identities=18% Similarity=0.152 Sum_probs=84.8
Q ss_pred eEEeccceEeeccCCCCCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEeccCCCC--CCcHHHHHHHHhcccCCCCeeEEe
Q 012253 39 YTVGLGQDCMAFCSEVEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDK--SKSIKTFLMQIFEKYGNTDIEGVD 116 (467)
Q Consensus 39 ~~~Gig~r~~av~~~~Ed~~~ma~~Aa~~aL~~agi~~~~Id~Li~~Tes~~~~--~ps~a~~v~~~Lgl~G~~~~~~~d 116 (467)
+..|.++..+.- ..+++..+|+++|++++|+++|+++++||.|++++..+... .+..+..+...+++ ..+.+++
T Consensus 5 ~Ivg~g~tpfgr-~~~~~~~eL~~eA~~~AL~dAgl~~~dId~vi~g~~~~~~~~~~~~~~~~~~~~~gl---~~~p~~~ 80 (389)
T PRK07516 5 SIVGWAHTPFGK-LDAETLESLIVRVAREALAHAGIAAGDVDGIFLGHFNAGFSPQDFPASLVLQADPAL---RFKPATR 80 (389)
T ss_pred EEEeCCcceeee-cCCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEEEecCCccccccchhHHHHHhcCC---CCCceee
Confidence 345677666543 34688999999999999999999999999999987643211 11122233334454 6678999
Q ss_pred eCCcChHHHHHHHHHHHHHHhCCCCCCEEEEEEeecc
Q 012253 117 STNACYGGTAALFNCVNWVESASWDGRYGLVVCTDSA 153 (467)
Q Consensus 117 i~~aC~gg~~AL~~A~~~l~a~~~~~~~aLVV~sD~~ 153 (467)
+.++|.+++.||..|..+|++|.+ +++||+++|..
T Consensus 81 v~~~CaSg~~Al~~A~~~I~sG~~--d~vLvvg~e~~ 115 (389)
T PRK07516 81 VENACATGSAAVYAALDAIEAGRA--RIVLVVGAEKM 115 (389)
T ss_pred eccccHHHHHHHHHHHHHHHCCCC--CEEEEEEehhh
Confidence 999999999999999999999977 99999999975
|
|
| >PF00108 Thiolase_N: Thiolase, N-terminal domain; InterPro: IPR020616 Two different types of thiolase [, , ] are found both in eukaryotes and in prokaryotes: acetoacetyl-CoA thiolase (2 | Back alignment and domain information |
|---|
Probab=98.90 E-value=7.3e-09 Score=101.58 Aligned_cols=97 Identities=18% Similarity=0.138 Sum_probs=84.2
Q ss_pred CCCCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHhcccCCCCeeEEeeCCcChHHHHHHHHHH
Q 012253 53 EVEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAALFNCV 132 (467)
Q Consensus 53 ~~Ed~~~ma~~Aa~~aL~~agi~~~~Id~Li~~Tes~~~~~ps~a~~v~~~Lgl~G~~~~~~~di~~aC~gg~~AL~~A~ 132 (467)
.+.++.+|+..|++.+|++++++|++||.|++|+..+....+.++..+.-..|+ +..+.++.+.++|.+|+.||..|.
T Consensus 22 ~~~~~~~L~~~a~~~al~~~~i~~~~Id~v~~G~~~~~~~g~~~ar~~~l~aGl--~~~vp~~~V~~~CaSG~~Av~~a~ 99 (264)
T PF00108_consen 22 ADVSPEDLAAEAVKAALERAGIDPEDIDAVIVGNVLQEGEGQNIARQAALAAGL--PESVPATTVNRACASGLQAVHLAA 99 (264)
T ss_dssp TTS-HHHHHHHHHHHHHHHHTSHGGGEEEEEEE-SSSCTTTCHHHHHHHHHTTS---TTSEEEEEE-GGGHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHhcccchhhhhhcCcccccccccchhhhhhhhhhccc--ccccceeeehhhhhHHHHHHHHhh
Confidence 367899999999999999999999999999999988866666777777778887 678999999999999999999999
Q ss_pred HHHHhCCCCCCEEEEEEeecc
Q 012253 133 NWVESASWDGRYGLVVCTDSA 153 (467)
Q Consensus 133 ~~l~a~~~~~~~aLVV~sD~~ 153 (467)
..|++|.. +.+|+++.|.+
T Consensus 100 ~~I~sG~~--dvvlagGvE~m 118 (264)
T PF00108_consen 100 MAIASGEA--DVVLAGGVESM 118 (264)
T ss_dssp HHHHTTS---SEEEEEEEEET
T ss_pred hhhcCCCc--cEEEEeccccc
Confidence 99999976 99999999998
|
3.1.9 from EC) and 3-ketoacyl-CoA thiolase (2.3.1.16 from EC). 3-ketoacyl-CoA thiolase (also called thiolase I) has a broad chain-length specificity for its substrates and is involved in degradative pathways such as fatty acid beta-oxidation. Acetoacetyl-CoA thiolase (also called thiolase II) is specific for the thiolysis of acetoacetyl-CoA and involved in biosynthetic pathways such as poly beta-hydroxybutyrate synthesis or steroid biogenesis. In eukaryotes, there are two forms of 3-ketoacyl-CoA thiolase: one located in the mitochondrion and the other in peroxisomes. There are two conserved cysteine residues important for thiolase activity. The first located in the N-terminal section of the enzymes is involved in the formation of an acyl-enzyme intermediate; the second located at the C-terminal extremity is the active site base involved in deprotonation in the condensation reaction. Mammalian nonspecific lipid-transfer protein (nsL-TP) (also known as sterol carrier protein 2) is a protein which seems to exist in two different forms: a 14 Kd protein (SCP-2) and a larger 58 Kd protein (SCP-x). The former is found in the cytoplasm or the mitochondria and is involved in lipid transport; the latter is found in peroxisomes. The C-terminal part of SCP-x is identical to SCP-2 while the N-terminal portion is evolutionary related to thiolases [].; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0008152 metabolic process; PDB: 1PXT_B 1AFW_B 1WL4_A 1WL5_A 4E1L_B 1WDK_D 1WDM_D 2D3T_D 1WDL_C 2WUA_B .... |
| >PRK07314 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.1e-07 Score=99.31 Aligned_cols=163 Identities=13% Similarity=0.103 Sum_probs=105.9
Q ss_pred ceeEEeEEEEecCCceeehhHHhhhh--CCCc----CeeE-EeccceEee-cc--------CCC-----CCHHHHHHHHH
Q 012253 7 KNVGILALDIYFPPTCVLQEALEVHD--GVSK----GKYT-VGLGQDCMA-FC--------SEV-----EDVISMSLTVV 65 (467)
Q Consensus 7 ~~vgI~ai~~y~P~~~v~~~el~~~~--g~~~----~k~~-~Gig~r~~a-v~--------~~~-----Ed~~~ma~~Aa 65 (467)
+.|-|.++++.+|-- .+.+++.+.. |.+. .+|. .+...+... ++ ++. .....|++.|+
T Consensus 2 ~~v~ItG~g~~~p~g-~~~~~~w~~l~~g~~~~~~~~~~~~~~~~~~~~g~i~~f~~~~~~~~~~~~~~~~~~~l~~~aa 80 (411)
T PRK07314 2 RRVVVTGLGAVSPLG-NDVESTWKNLLAGKSGIGPITHFDTSDLAVKIAGEVKDFNPDDYMSRKEARRMDRFIQYGIAAA 80 (411)
T ss_pred CcEEEEcceEECCCc-CCHHHHHHHHHhCCCcEEECCcccccCCCccEEEEeCCcChhhcCCHHHhhcCCHHHHHHHHHH
Confidence 469999999999975 4666655542 2210 1110 000000000 00 111 12467999999
Q ss_pred HHHHHHcCCCcCCcC----EEEEEeccCC---------------------C----CC-CcHHHHHHHHhcccCCCCeeEE
Q 012253 66 TSLLEKYKIDPTQIG----RLEVGSETVI---------------------D----KS-KSIKTFLMQIFEKYGNTDIEGV 115 (467)
Q Consensus 66 ~~aL~~agi~~~~Id----~Li~~Tes~~---------------------~----~~-ps~a~~v~~~Lgl~G~~~~~~~ 115 (467)
+++|+++|++++++| .++++|..+. . .. ...+.+|...||+.| .++
T Consensus 81 ~~Al~dAGl~~~~~~~~~~gv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~is~~~gl~G----p~~ 156 (411)
T PRK07314 81 KQAVEDAGLEITEENADRIGVIIGSGIGGLETIEEQHITLLEKGPRRVSPFFVPMAIINMAAGHVSIRYGAKG----PNH 156 (411)
T ss_pred HHHHHHcCCCcccCCcccEEEEEecCcCChHHHHHHHHHHHhcCccccChhhhhhhcchHHHHHHHHHhCCCC----ccc
Confidence 999999999998888 5777775321 0 01 125568889998733 345
Q ss_pred eeCCcChHHHHHHHHHHHHHHhCCCCCCEEEEEEeeccc-------c---------cCCC-----------CCCccccce
Q 012253 116 DSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDSAV-------Y---------AEGP-----------ARPTGGAAA 168 (467)
Q Consensus 116 di~~aC~gg~~AL~~A~~~l~a~~~~~~~aLVV~sD~~~-------y---------~~~~-----------~~~t~GdGA 168 (467)
-+..+|++++.||..|..+|++|.. +.|||.++|... | ...+ +....||||
T Consensus 157 tv~~acaSgl~Al~~A~~~I~~G~~--d~vlvgg~~~~~~~~~~~~~~~~~~ls~~~~~p~~~~~pfd~~~dG~~~geGA 234 (411)
T PRK07314 157 SIVTACATGAHAIGDAARLIAYGDA--DVMVAGGAEAAITPLGIAGFAAARALSTRNDDPERASRPFDKDRDGFVMGEGA 234 (411)
T ss_pred cchhhhHHHHHHHHHHHHHHhcCCC--CEEEEeeecccCCHHHHHHHHHhccccCCCCCCCcCcCCCcCCCCCEeEEceE
Confidence 5667999999999999999999977 899999998631 0 0000 113459999
Q ss_pred eEEEecCC
Q 012253 169 VAMLIGPD 176 (467)
Q Consensus 169 vA~Ll~~~ 176 (467)
+|+||.+.
T Consensus 235 aavvL~~~ 242 (411)
T PRK07314 235 GILVLEEL 242 (411)
T ss_pred EEEEEeeH
Confidence 99999874
|
|
| >PRK05952 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed | Back alignment and domain information |
|---|
Probab=98.87 E-value=5.1e-07 Score=93.14 Aligned_cols=223 Identities=16% Similarity=0.190 Sum_probs=128.5
Q ss_pred ceeEEeEEEEecCCceeehhHHhhhh--CCC---c-CeeE--EeccceEeeccCCCCCHHHHHHHHHHHHHHHcCCCc--
Q 012253 7 KNVGILALDIYFPPTCVLQEALEVHD--GVS---K-GKYT--VGLGQDCMAFCSEVEDVISMSLTVVTSLLEKYKIDP-- 76 (467)
Q Consensus 7 ~~vgI~ai~~y~P~~~v~~~el~~~~--g~~---~-~k~~--~Gig~r~~av~~~~Ed~~~ma~~Aa~~aL~~agi~~-- 76 (467)
+.|-|.++|+..|--. .+++.+.. |.+ + ..|. ...-..... ........++..|++++|+++|+++
T Consensus 2 ~rVvITG~G~vsp~G~--~~~~~~~l~~G~sgi~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~a~~~Al~dagl~~~~ 77 (381)
T PRK05952 2 MKVVVTGIGLVSALGD--LEQSWQRLLQGKSGIKLHQPFPELPPLPLGLIG--NQPSSLEDLTKTVVTAALKDAGLTPPL 77 (381)
T ss_pred CeEEEEeeEEECcccC--HHHHHHHHHcCCCCeEeCCcccccccccceeec--cccccccHHHHHHHHHHHHhcCCCCCC
Confidence 5799999999999886 55554442 221 1 0110 000000000 0011233467789999999999864
Q ss_pred CCcCEEEEEeccCC--------------------CCC--------C-cHHHHHHHHhcccCCCCeeEEeeCCcChHHHHH
Q 012253 77 TQIGRLEVGSETVI--------------------DKS--------K-SIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAA 127 (467)
Q Consensus 77 ~~Id~Li~~Tes~~--------------------~~~--------p-s~a~~v~~~Lgl~G~~~~~~~di~~aC~gg~~A 127 (467)
++++ +++||..+. +.. + .++..|...|++.| .++-+..+|++++.|
T Consensus 78 ~~~G-v~~Gt~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~ia~~~~~~G----p~~ti~~aCasg~~A 152 (381)
T PRK05952 78 TDCG-VVIGSSRGCQGQWEKLARQMYQGDDSPDEELDLENWLDTLPHQAAIAAARQIGTQG----PVLAPMAACATGLWA 152 (381)
T ss_pred CCEE-EEEeeCcchHHHHHHHHHHHhhcCCccccccCHHHHHHhcccHHHHHHHHHhCCCC----ccccccchhHHHHHH
Confidence 4444 556664331 001 1 24677888888844 356678999999999
Q ss_pred HHHHHHHHHhCCCCCCEEEEEEeecc--c-----cc------CC-----C---CCCccccceeEEEecCCCC-----cee
Q 012253 128 LFNCVNWVESASWDGRYGLVVCTDSA--V-----YA------EG-----P---ARPTGGAAAVAMLIGPDAP-----IAF 181 (467)
Q Consensus 128 L~~A~~~l~a~~~~~~~aLVV~sD~~--~-----y~------~~-----~---~~~t~GdGAvA~Ll~~~~~-----~~~ 181 (467)
|..|.++|++|.. +.+||.++|.. . +. .. + +-...|+||+++||++... ..+
T Consensus 153 i~~A~~~i~~G~~--d~~lvgg~d~~~~~~~~~~~~~~~~ls~~~~rPfd~~r~G~v~gEGaa~lvLe~~~~A~~rg~~i 230 (381)
T PRK05952 153 IAQGVELIQTGQC--QRVIAGAVEAPITPLTLAGFQQMGALAKTGAYPFDRQREGLVLGEGGAILVLESAELAQKRGAKI 230 (381)
T ss_pred HHHHHHHHHcCCC--CEEEEccccccCCHHHHHHHHhcCCcCCCCCCCCCCCCCCccccccEEEEEEeeHHHHHhCCCce
Confidence 9999999999976 89999999963 1 11 00 1 1134699999999987531 000
Q ss_pred eccccccccc-CcccccccCCCCCCceecCcchHHHHHHHHHHHHHHHHHHHHhhhcCCCCccccceeccCCchHHHHHH
Q 012253 182 ESKLRGSHMS-HAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKYFCQKFEKLEGRQFSMLDVDYFVFHSPYNKLVQK 260 (467)
Q Consensus 182 ~~~~~~~~~~-~~~df~~p~~~~~~~~vdG~~s~~~y~~a~~~~~~~~~~~~~~~~~~~~~~~d~d~~i~H~p~~k~~~k 260 (467)
...+.+.... +......| ..++.. -.+++. ..+ +++++.++|||++..|-...+..+.
T Consensus 231 ~a~I~g~~~~~d~~~~~~~-------~~~~~~----~~~ai~----~Al------~~agi~p~dId~i~~hgtgt~~~D~ 289 (381)
T PRK05952 231 YGQILGFGLTCDAYHMSAP-------EPDGKS----AIAAIQ----QCL------ARSGLTPEDIDYIHAHGTATRLNDQ 289 (381)
T ss_pred EEEEEEEEecCCCCCCCCC-------CCCHHH----HHHHHH----HHH------HHhCCCHHHeeEEEccCCCCCCCcH
Confidence 0012222211 11111111 122221 122333 222 2346889999999999988776544
Q ss_pred H
Q 012253 261 S 261 (467)
Q Consensus 261 ~ 261 (467)
.
T Consensus 290 ~ 290 (381)
T PRK05952 290 R 290 (381)
T ss_pred H
Confidence 3
|
|
| >PRK08722 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed | Back alignment and domain information |
|---|
Probab=98.85 E-value=3.4e-07 Score=95.61 Aligned_cols=227 Identities=15% Similarity=0.144 Sum_probs=133.0
Q ss_pred ceeEEeEEEEecCCceeehhHHhhhh--CCC---c-CeeE-EeccceEee-cc--------CCC-----CCHHHHHHHHH
Q 012253 7 KNVGILALDIYFPPTCVLQEALEVHD--GVS---K-GKYT-VGLGQDCMA-FC--------SEV-----EDVISMSLTVV 65 (467)
Q Consensus 7 ~~vgI~ai~~y~P~~~v~~~el~~~~--g~~---~-~k~~-~Gig~r~~a-v~--------~~~-----Ed~~~ma~~Aa 65 (467)
..|-|.++++..|-- .+.+++.+.. |.+ + .+|. ..+..+.-. +. +.. .....+++.|+
T Consensus 4 ~~VvItG~g~~~p~g-~~~~~~w~~L~~g~s~i~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~d~~~~~~l~a~ 82 (414)
T PRK08722 4 RRVVVTGMGMLSPVG-NTVESSWKALLAGQSGIVNIEHFDTTNFSTRFAGLVKDFNCEEYMSKKDARKMDLFIQYGIAAG 82 (414)
T ss_pred CCEEEEeeEEECCCC-CCHHHHHHHHHhCCCeeeecCccccccCCCceeEEcCCCChhHcCCHHHHhhcCHHHHHHHHHH
Confidence 579999999999987 4677766552 221 1 1110 000000000 00 000 11346889999
Q ss_pred HHHHHHcCCCcCCcC----EEEEEeccCCC-----------------CC--------C-cHHHHHHHHhcccCCCCeeEE
Q 012253 66 TSLLEKYKIDPTQIG----RLEVGSETVID-----------------KS--------K-SIKTFLMQIFEKYGNTDIEGV 115 (467)
Q Consensus 66 ~~aL~~agi~~~~Id----~Li~~Tes~~~-----------------~~--------p-s~a~~v~~~Lgl~G~~~~~~~ 115 (467)
+++|+++|+++.+.+ .+++||..+.. .. + .++.+|...+|+.| .++
T Consensus 83 ~~Al~dAGl~~~~~~~~r~Gv~vGt~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~is~~~gl~G----p~~ 158 (414)
T PRK08722 83 IQALDDSGLEVTEENAHRIGVAIGSGIGGLGLIEAGHQALVEKGPRKVSPFFVPSTIVNMIAGNLSIMRGLRG----PNI 158 (414)
T ss_pred HHHHHHcCCCccccCCCCEEEEEeeCCCcchhHHHHHHHHHhcCcccCCchhcccccccHHHHHHHHHhCCCC----Ccc
Confidence 999999999764433 36677653311 00 1 36778888988844 255
Q ss_pred eeCCcChHHHHHHHHHHHHHHhCCCCCCEEEEEEeeccc-------cc---------CCC---CC--------Cccccce
Q 012253 116 DSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDSAV-------YA---------EGP---AR--------PTGGAAA 168 (467)
Q Consensus 116 di~~aC~gg~~AL~~A~~~l~a~~~~~~~aLVV~sD~~~-------y~---------~~~---~~--------~t~GdGA 168 (467)
.+..||++++.||..|.++|++|.. +.+||.++|... |. +.+ .+ ...|+||
T Consensus 159 ti~~aCas~~~Al~~A~~~i~~G~~--d~~lvgg~d~~~~~~~~~~f~~~~~ls~~~~~p~~~~rpfd~~~~G~~~gEGa 236 (414)
T PRK08722 159 AISTACTTGLHNIGHAARMIAYGDA--DAMVAGGAEKASTPLGMAGFGAAKALSTRNDEPQKASRPWDKDRDGFVLGDGA 236 (414)
T ss_pred ccccccHHHHHHHHHHHHHHHcCCC--CEEEEecccccCCHHHHHHHHHcCCcccCCCCCccccCcCcCCCCceEeeceE
Confidence 6789999999999999999999977 999999999741 10 000 11 2349999
Q ss_pred eEEEecCCCCc-----eeecccccccc-cCcccccccCCCCCCceecCcchHHHHHHHHHHHHHHHHHHHHhhhcCCCCc
Q 012253 169 VAMLIGPDAPI-----AFESKLRGSHM-SHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKYFCQKFEKLEGRQFSM 242 (467)
Q Consensus 169 vA~Ll~~~~~~-----~~~~~~~~~~~-~~~~df~~p~~~~~~~~vdG~~s~~~y~~a~~~~~~~~~~~~~~~~~~~~~~ 242 (467)
+|+||.+.... .+.-.+.++.. .+...+..|. .+|.- -..++..++ ..+++++
T Consensus 237 aalvLe~~~~A~~~g~~i~a~i~g~~~~~d~~~~~~p~-------~~~~~----~~~a~~~Al----------~~agi~~ 295 (414)
T PRK08722 237 GMMVLEEYEHAKARGAKIYAELVGFGMSGDAYHMTSPS-------EDGSG----GALAMEAAM----------RDAGVTG 295 (414)
T ss_pred EEEEEccHHHHHHCCCeEEEEEEEEEEcCCCCCCCCCC-------cchHH----HHHHHHHHH----------HHcCCCH
Confidence 99999975310 00000122211 1222233332 12211 122233222 3347899
Q ss_pred cccceeccCCchHHHHHHH
Q 012253 243 LDVDYFVFHSPYNKLVQKS 261 (467)
Q Consensus 243 ~d~d~~i~H~p~~k~~~k~ 261 (467)
+|||++..|-.++...+..
T Consensus 296 ~did~ie~hgtgt~~~D~~ 314 (414)
T PRK08722 296 EQIGYVNAHGTSTPAGDVA 314 (414)
T ss_pred HHcCEEEccCccCCCCCHH
Confidence 9999999999887655443
|
|
| >PLN02287 3-ketoacyl-CoA thiolase | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.8e-08 Score=105.86 Aligned_cols=97 Identities=12% Similarity=0.173 Sum_probs=83.2
Q ss_pred CCCCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEeccCCCCCCcH-HHHHHHHhcccCCCCeeEEeeCCcChHHHHHHHHH
Q 012253 53 EVEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSI-KTFLMQIFEKYGNTDIEGVDSTNACYGGTAALFNC 131 (467)
Q Consensus 53 ~~Ed~~~ma~~Aa~~aL~~agi~~~~Id~Li~~Tes~~~~~ps~-a~~v~~~Lgl~G~~~~~~~di~~aC~gg~~AL~~A 131 (467)
.+.+..+|+.+|++++|+++|++++|||.+++|+.++....+.. +..+...+|+ +..+.++++.++|.+|..|+..|
T Consensus 67 ~~~s~~eLa~eA~~~AL~dAgl~~~dID~vv~G~~~~~~~~~~~~~r~~a~~~Gl--~~~~pa~~V~~~CaSG~~Ai~~A 144 (452)
T PLN02287 67 KDTYPDDLLAPVLKAVVEKTGLNPSEVGDIVVGTVLAPGSQRANECRMAAFYAGF--PETVPVRTVNRQCSSGLQAVADV 144 (452)
T ss_pred CCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEEeecCcccccchHHHHHHHHCCC--CCCcceEEEeccCchHHHHHHHH
Confidence 36789999999999999999999999999999988765544443 3456667787 44588999999999999999999
Q ss_pred HHHHHhCCCCCCEEEEEEeecc
Q 012253 132 VNWVESASWDGRYGLVVCTDSA 153 (467)
Q Consensus 132 ~~~l~a~~~~~~~aLVV~sD~~ 153 (467)
...|++|.+ +.|||++.|.+
T Consensus 145 a~~I~sG~~--dvvLv~GvE~m 164 (452)
T PLN02287 145 AAAIKAGFY--DIGIGAGVESM 164 (452)
T ss_pred HHHHHcCCC--CeEEEEeEEec
Confidence 999999976 99999999876
|
|
| >PRK06333 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed | Back alignment and domain information |
|---|
Probab=98.82 E-value=2.3e-07 Score=97.18 Aligned_cols=177 Identities=16% Similarity=0.104 Sum_probs=110.5
Q ss_pred HHHHHHHHHHHHHHHcCCCcCCc-C----EEEEEeccCCC---------------------CCC-----cHHHHHHHHhc
Q 012253 57 VISMSLTVVTSLLEKYKIDPTQI-G----RLEVGSETVID---------------------KSK-----SIKTFLMQIFE 105 (467)
Q Consensus 57 ~~~ma~~Aa~~aL~~agi~~~~I-d----~Li~~Tes~~~---------------------~~p-----s~a~~v~~~Lg 105 (467)
...|++.|++++|+++|++++++ + .+++||..+.. ..+ ..+.+|...||
T Consensus 82 ~~~l~~~aa~~Al~dAgl~~~~~~~~~~~Gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~is~~~g 161 (424)
T PRK06333 82 FILFAMAAAKEALAQAGWDPDTLEDRERTATIIGSGVGGFPAIAEAVRTLDSRGPRRLSPFTIPSFLTNMAAGHVSIRYG 161 (424)
T ss_pred HHHHHHHHHHHHHHhcCCCccccCCcccEEEEEecCcccHHHHHHHHHHHHhcCCcccChhHHhhhhhhHHHHHHHHHhC
Confidence 35789999999999999987766 3 56677754321 011 24567888888
Q ss_pred ccCCCCeeEEeeCCcChHHHHHHHHHHHHHHhCCCCCCEEEEEEeeccc-------------c----cCCC---------
Q 012253 106 KYGNTDIEGVDSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDSAV-------------Y----AEGP--------- 159 (467)
Q Consensus 106 l~G~~~~~~~di~~aC~gg~~AL~~A~~~l~a~~~~~~~aLVV~sD~~~-------------y----~~~~--------- 159 (467)
+.| .++-+..+|++++.||..|..+|++|.. +.+||+++|... + ...+
T Consensus 162 l~G----p~~~v~~aCaSg~~Al~~A~~~I~~G~~--d~alvgG~e~~~~~~~~~~f~~~~~l~~~~~~~p~~~~~Pfd~ 235 (424)
T PRK06333 162 FKG----PLGAPVTACAAGVQAIGDAARLIRSGEA--DVAVCGGTEAAIDRVSLAGFAAARALSTRFNDAPEQASRPFDR 235 (424)
T ss_pred CCC----CCccccchhHHHHHHHHHHHHHHHcCCC--CEEEEeeecccCCHHHHHHHHHcccccccCCCCCCcCCCCCCC
Confidence 833 2445679999999999999999999977 999999999730 1 1000
Q ss_pred --CCCccccceeEEEecCCCC-----ceeeccccccccc-CcccccccCCCCCCceecCcchHHHHHHHHHHHHHHHHHH
Q 012253 160 --ARPTGGAAAVAMLIGPDAP-----IAFESKLRGSHMS-HAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKYFCQK 231 (467)
Q Consensus 160 --~~~t~GdGAvA~Ll~~~~~-----~~~~~~~~~~~~~-~~~df~~p~~~~~~~~vdG~~s~~~y~~a~~~~~~~~~~~ 231 (467)
+..+.|+||+++||.+... ..+...+.|.... +...+..| ..+|.- ..+++..++
T Consensus 236 ~~~G~~~gEGaa~lvLe~~~~A~~rg~~i~a~i~G~~~~~d~~~~~~~-------~~~~~~----~~~a~~~Al------ 298 (424)
T PRK06333 236 DRDGFVMGEGAGILVIETLEHALARGAPPLAELVGYGTSADAYHMTAG-------PEDGEG----ARRAMLIAL------ 298 (424)
T ss_pred CCCCeEEecceEEEEEeeHHHHHHCCCeEEEEEEEEEEcCCCCCCCCC-------CCCcHH----HHHHHHHHH------
Confidence 1134599999999986421 0000012222221 11111111 122221 233333333
Q ss_pred HHhhhcCCCCccccceeccCCchHHHHHH
Q 012253 232 FEKLEGRQFSMLDVDYFVFHSPYNKLVQK 260 (467)
Q Consensus 232 ~~~~~~~~~~~~d~d~~i~H~p~~k~~~k 260 (467)
..+++.++|||++..|-.++...+.
T Consensus 299 ----~~Agi~p~dId~i~~hgtgt~~~D~ 323 (424)
T PRK06333 299 ----RQAGIPPEEVQHLNAHATSTPVGDL 323 (424)
T ss_pred ----HHcCCCHHHCCEEeccCCCCccchH
Confidence 2346889999999999988775443
|
|
| >PRK07851 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.81 E-value=3e-08 Score=103.15 Aligned_cols=109 Identities=11% Similarity=0.119 Sum_probs=87.7
Q ss_pred EEeccceEeeccC----CCCCHHHHHHHHHHHHHHHc-CCCcCCcCEEEEEeccCC-CCCCcHHHHHHHHhcccCCCCee
Q 012253 40 TVGLGQDCMAFCS----EVEDVISMSLTVVTSLLEKY-KIDPTQIGRLEVGSETVI-DKSKSIKTFLMQIFEKYGNTDIE 113 (467)
Q Consensus 40 ~~Gig~r~~av~~----~~Ed~~~ma~~Aa~~aL~~a-gi~~~~Id~Li~~Tes~~-~~~ps~a~~v~~~Lgl~G~~~~~ 113 (467)
..|.++..+.-.. .+.+..+|+.+|++++|+++ |++|++||.+++++..+. ...+..+..+...+|+ +++.
T Consensus 6 IvG~~~Tpfg~~~~g~~~~~~~~eL~~~A~~~AL~da~gl~~~dID~vv~g~~~~~~~~g~~~~~~~a~~lGl---~~~p 82 (406)
T PRK07851 6 IVSTARSPIGRAFKGSLKDMRPDDLAAQMVRAALDKVPALDPTDIDDLMLGCGLPGGEQGFNMARVVAVLLGY---DFLP 82 (406)
T ss_pred EEecCCCCcccCCCCccCCCCHHHHHHHHHHHHHHhccCCCHHHCCEEEEEcccccccccCCHHHHHHHHcCC---CCCC
Confidence 3466655433111 24678999999999999996 999999999999864432 2235567789999998 4578
Q ss_pred EEeeCCcChHHHHHHHHHHHHHHhCCCCCCEEEEEEeecc
Q 012253 114 GVDSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDSA 153 (467)
Q Consensus 114 ~~di~~aC~gg~~AL~~A~~~l~a~~~~~~~aLVV~sD~~ 153 (467)
++.+.++|++|..|+..|...|++|.+ +.|||++.|..
T Consensus 83 ~~~v~~~caSG~~av~~Aa~~I~sG~~--d~vLv~G~e~~ 120 (406)
T PRK07851 83 GTTVNRYCSSSLQTTRMAFHAIKAGEG--DVFISAGVETV 120 (406)
T ss_pred eeeeeccchhHHHHHHHHHHHHHCCCC--CEEEEeeEEec
Confidence 889999999999999999999999977 99999999986
|
|
| >PRK07661 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.80 E-value=2.5e-08 Score=103.24 Aligned_cols=96 Identities=9% Similarity=0.030 Sum_probs=83.8
Q ss_pred CCCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEeccCCCC-CCcHHHHHHHHhcccCCCCeeEEeeCCcChHHHHHHHHHH
Q 012253 54 VEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDK-SKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAALFNCV 132 (467)
Q Consensus 54 ~Ed~~~ma~~Aa~~aL~~agi~~~~Id~Li~~Tes~~~~-~ps~a~~v~~~Lgl~G~~~~~~~di~~aC~gg~~AL~~A~ 132 (467)
+.+..+|+.+|++++|+++|+.+++||.+++|+..+... .+.++.+++..+|+ +..+.++.+.++|.+|..|+..|.
T Consensus 24 ~~~~~eLa~~A~~~AL~~ag~~~~dID~vi~g~~~~~~~~g~~~a~~~~~~lGl--~~~~p~~~V~~aCaSG~~Al~~A~ 101 (391)
T PRK07661 24 TVRPDDLGALVVKETLKRAGNYEGPIDDLIIGCAMPEAEQGLNMARNIGALAGL--PYTVPAITINRYCSSGLQSIAYGA 101 (391)
T ss_pred CCCHHHHHHHHHHHHHHhcCCChhHCCEEEEEeccccccccchHHHHHHHHcCC--CCCcceeehhhhhhHHHHHHHHHH
Confidence 347899999999999999988889999999997765433 36677789999997 335889999999999999999999
Q ss_pred HHHHhCCCCCCEEEEEEeecc
Q 012253 133 NWVESASWDGRYGLVVCTDSA 153 (467)
Q Consensus 133 ~~l~a~~~~~~~aLVV~sD~~ 153 (467)
..|++|.. +.+||+++|.+
T Consensus 102 ~~I~sG~~--d~vLv~G~E~m 120 (391)
T PRK07661 102 ERIMLGHS--EAVIAGGAESM 120 (391)
T ss_pred HHHHcCCC--CEEEEEEEeec
Confidence 99999977 99999999976
|
|
| >PLN02836 3-oxoacyl-[acyl-carrier-protein] synthase | Back alignment and domain information |
|---|
Probab=98.80 E-value=2.5e-07 Score=97.31 Aligned_cols=177 Identities=16% Similarity=0.177 Sum_probs=109.3
Q ss_pred HHHHHHHHHHHHHHHcCCCcC-----CcCEEEEEeccCCC-----------------CC--------C-cHHHHHHHHhc
Q 012253 57 VISMSLTVVTSLLEKYKIDPT-----QIGRLEVGSETVID-----------------KS--------K-SIKTFLMQIFE 105 (467)
Q Consensus 57 ~~~ma~~Aa~~aL~~agi~~~-----~Id~Li~~Tes~~~-----------------~~--------p-s~a~~v~~~Lg 105 (467)
...|++.|+.++|+++|+++. +...+++||..+.. .. + .++.+|...||
T Consensus 93 ~~~~~~~aa~~Al~dAg~~~~~~~~~~~~Gv~~Gt~~g~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~n~~a~~is~~~g 172 (437)
T PLN02836 93 FIGYALCAADEALSDARWLPSEDEAKERTGVSIGGGIGSITDILEAAQLICEKRLRRLSPFFVPRILINMAAGHVSIRYG 172 (437)
T ss_pred HHHHHHHHHHHHHHHcCCCcccccCCcCEEEEEeeccCcHHHHHHHHHHHHhcCCCCCChhhhhhhcccHHHHHHHHHhC
Confidence 457899999999999998542 45667788753221 00 1 24567888888
Q ss_pred ccCCCCeeEEeeCCcChHHHHHHHHHHHHHHhCCCCCCEEEEEEeeccc-----------------ccCC------C---
Q 012253 106 KYGNTDIEGVDSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDSAV-----------------YAEG------P--- 159 (467)
Q Consensus 106 l~G~~~~~~~di~~aC~gg~~AL~~A~~~l~a~~~~~~~aLVV~sD~~~-----------------y~~~------~--- 159 (467)
+.| .++-+.++|++++.||..|..+|++|.. +.+||.++|... +... +
T Consensus 173 l~G----p~~tv~~acaSg~~Al~~A~~~I~~G~~--d~~lvgg~~~~~~~~~~~~~~~~~~l~~~~~~~p~~~~~pfd~ 246 (437)
T PLN02836 173 FQG----PNHAAVTACATGAHSIGDAFRMIQFGDA--DVMVAGGTESSIDALSIAGFSRSRALSTKFNSCPTEASRPFDC 246 (437)
T ss_pred CCC----ceeceeChhHHHHHHHHHHHHHHHcCCC--CEEEEccccccCCHHHHHHHHHhhhhhcccCCCcccccCCccc
Confidence 732 3666789999999999999999999977 899998888631 0100 0
Q ss_pred --CCCccccceeEEEecCCCCc-----eeeccccccccc-CcccccccCCCCCCceecCcchHHHHHHHHHHHHHHHHHH
Q 012253 160 --ARPTGGAAAVAMLIGPDAPI-----AFESKLRGSHMS-HAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKYFCQK 231 (467)
Q Consensus 160 --~~~t~GdGAvA~Ll~~~~~~-----~~~~~~~~~~~~-~~~df~~p~~~~~~~~vdG~~s~~~y~~a~~~~~~~~~~~ 231 (467)
+-.+.|+||+|+||++...- .+-..+.++... +...... |..++.. ...++..++
T Consensus 247 ~~~G~~~gEGaaalVLe~~~~A~~~g~~i~a~I~g~~~~~d~~~~~~-------p~~~~~~----~~~a~~~Al------ 309 (437)
T PLN02836 247 DRDGFVIGEGAGVLVLEELEHAKRRGAKIYAEVRGYGMSGDAHHITQ-------PHEDGRG----AVLAMTRAL------ 309 (437)
T ss_pred CCCCeeeecCEEEEEEeeHHHHHHCCCceEEEEEeeeecCCCCCCcC-------CCcchHH----HHHHHHHHH------
Confidence 12346999999999974210 000001122111 1111111 1122221 122333322
Q ss_pred HHhhhcCCCCccccceeccCCchHHHHHH
Q 012253 232 FEKLEGRQFSMLDVDYFVFHSPYNKLVQK 260 (467)
Q Consensus 232 ~~~~~~~~~~~~d~d~~i~H~p~~k~~~k 260 (467)
+.+++.++|||++..|-.+....+.
T Consensus 310 ----~~Agi~~~dId~ve~hgtgt~~~D~ 334 (437)
T PLN02836 310 ----QQSGLHPNQVDYVNAHATSTPLGDA 334 (437)
T ss_pred ----HHcCCCHhHcCEEEccCCcCcCcCH
Confidence 3357889999999999988865544
|
|
| >PRK09185 3-oxoacyl-(acyl carrier protein) synthase I; Reviewed | Back alignment and domain information |
|---|
Probab=98.80 E-value=4.5e-07 Score=94.04 Aligned_cols=136 Identities=19% Similarity=0.214 Sum_probs=86.0
Q ss_pred cHHHHHHHHhcccCCCCeeEEeeCCcChHHHHHHHHHHHHHHhCCCCCCEEEEEEeecc-cc------------------
Q 012253 95 SIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDSA-VY------------------ 155 (467)
Q Consensus 95 s~a~~v~~~Lgl~G~~~~~~~di~~aC~gg~~AL~~A~~~l~a~~~~~~~aLVV~sD~~-~y------------------ 155 (467)
..+.+|+..||+.| .++.+..||++++.||..|..+|++|.. +.|||+++|.. ..
T Consensus 138 ~~a~~ia~~lgl~G----p~~~i~~acas~~~Al~~A~~~I~~G~~--d~vlvgg~d~~~~~~~~~~~~~~~l~~~~~~P 211 (392)
T PRK09185 138 SLADFLRAYLGLSG----PAYTISTACSSSAKVFASARRLLEAGLC--DAAIVGGVDSLCRLTLNGFNSLESLSPQPCRP 211 (392)
T ss_pred HHHHHHHHHhCCCC----CcccccChhHHHHHHHHHHHHHHHcCCC--CEEEEeeccccChHHHHHHHhccccCCCccCC
Confidence 47788999999833 4677788999999999999999999977 99999999853 11
Q ss_pred -cCCCCCCccccceeEEEecCCCCceeeccccccccc-CcccccccCCCCCCceecCcchHHHHHHHHHHHHHHHHHHHH
Q 012253 156 -AEGPARPTGGAAAVAMLIGPDAPIAFESKLRGSHMS-HAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKYFCQKFE 233 (467)
Q Consensus 156 -~~~~~~~t~GdGAvA~Ll~~~~~~~~~~~~~~~~~~-~~~df~~p~~~~~~~~vdG~~s~~~y~~a~~~~~~~~~~~~~ 233 (467)
+......+.||||+++||++.....+. +.+.... +......| ..++.- ..+++.. .+
T Consensus 212 fd~~~~G~~~gEGaa~vVLe~~~~~~~~--I~g~g~~~d~~~~~~~-------~~~~~~----~~~a~~~----Al---- 270 (392)
T PRK09185 212 FSANRDGINIGEAAAFFLLEREDDAAVA--LLGVGESSDAHHMSAP-------HPEGLG----AILAMQQ----AL---- 270 (392)
T ss_pred CcCCCCccceeceEEEEEEEEcCCCcEE--EEEEEEeCCCCCCCCC-------CCCHHH----HHHHHHH----HH----
Confidence 001123567999999999987321111 1111111 11111111 112211 1122222 22
Q ss_pred hhhcCCCCccccceeccCCchHHHHH
Q 012253 234 KLEGRQFSMLDVDYFVFHSPYNKLVQ 259 (467)
Q Consensus 234 ~~~~~~~~~~d~d~~i~H~p~~k~~~ 259 (467)
+.+++.++|||++..|-.+.+..+
T Consensus 271 --~~Agl~~~dId~v~~hgtgt~~~D 294 (392)
T PRK09185 271 --ADAGLAPADIGYINLHGTATPLND 294 (392)
T ss_pred --HHcCCCHHHccEEEeCCCCCcCCC
Confidence 335799999999999998877544
|
|
| >PTZ00050 3-oxoacyl-acyl carrier protein synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.80 E-value=3.2e-07 Score=96.07 Aligned_cols=90 Identities=12% Similarity=0.188 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHHHHHcCCC-cCCcCE----EEEEeccCCCC--------------------------CCcHHHHHHHHhc
Q 012253 57 VISMSLTVVTSLLEKYKID-PTQIGR----LEVGSETVIDK--------------------------SKSIKTFLMQIFE 105 (467)
Q Consensus 57 ~~~ma~~Aa~~aL~~agi~-~~~Id~----Li~~Tes~~~~--------------------------~ps~a~~v~~~Lg 105 (467)
...|++.|++++|+++|++ +++++. +++++..+... .-.++.+|...||
T Consensus 77 ~~~l~~~aa~~Al~dAGl~~~~~~~~~~~Gv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~is~~~~ 156 (421)
T PTZ00050 77 ATHFAMAAAREALADAKLDILSEKDQERIGVNIGSGIGSLADLTDEMKTLYEKGHSRVSPYFIPKILGNMAAGLVAIKHK 156 (421)
T ss_pred HHHHHHHHHHHHHHHcCCCcccccCcccEEEEEccCcccHHHHHHHHHHHHhcCcCcCCHHHHHhhhhhHHHHHHHHHhC
Confidence 5789999999999999998 666553 44555432210 0124556777777
Q ss_pred ccCCCCeeEEeeCCcChHHHHHHHHHHHHHHhCCCCCCEEEEEEeec
Q 012253 106 KYGNTDIEGVDSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDS 152 (467)
Q Consensus 106 l~G~~~~~~~di~~aC~gg~~AL~~A~~~l~a~~~~~~~aLVV~sD~ 152 (467)
+.| .++.+..+|++++.||..|..+|++|.. +.+||.++|.
T Consensus 157 l~G----p~~ti~~aCaSg~~Al~~A~~~I~~G~~--d~~lvgG~e~ 197 (421)
T PTZ00050 157 LKG----PSGSAVTACATGAHCIGEAFRWIKYGEA--DIMICGGTEA 197 (421)
T ss_pred CCC----cccccccHhHHHHHHHHHHHHHHHcCCC--CEEEECcccc
Confidence 733 3456788999999999999999999977 8999999986
|
|
| >PRK08439 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed | Back alignment and domain information |
|---|
Probab=98.78 E-value=4e-07 Score=94.92 Aligned_cols=163 Identities=18% Similarity=0.183 Sum_probs=105.2
Q ss_pred ceeEEeEEEEecCCceeehhHHhhhh--CCC---c-Cee-----EEec-cc-eEe---eccCC-----CCCHHHHHHHHH
Q 012253 7 KNVGILALDIYFPPTCVLQEALEVHD--GVS---K-GKY-----TVGL-GQ-DCM---AFCSE-----VEDVISMSLTVV 65 (467)
Q Consensus 7 ~~vgI~ai~~y~P~~~v~~~el~~~~--g~~---~-~k~-----~~Gi-g~-r~~---av~~~-----~Ed~~~ma~~Aa 65 (467)
..|-|.+||+..|--. +.+++.+.. |.+ + ..| ...+ |+ ..+ .+.++ -.....|++.|+
T Consensus 2 ~~v~ItG~g~vsp~G~-~~~~~~~~L~~G~s~i~~~~~~~~~~~~~~~~g~i~~f~~~~~~~~~~~~~~~~~~~l~~~Aa 80 (406)
T PRK08439 2 KRVVVTGIGMINSLGL-NKESSFKAICNGECGIKKITLFDASDFPVQIAGEITDFDPTEVMDPKEVKKADRFIQLGLKAA 80 (406)
T ss_pred CCEEEEeeEEECCCcC-CHHHHHHHHHcCCCceEeCCCccccCCCCceeEEcCCcChhhcCCHHHHhhcCHHHHHHHHHH
Confidence 4699999999999874 666655442 321 0 111 0000 00 000 00010 012468999999
Q ss_pred HHHHHHcCCCcCCcC----EEEEEeccCCC-------------------------CCC-cHHHHHHHHhcccCCCCeeEE
Q 012253 66 TSLLEKYKIDPTQIG----RLEVGSETVID-------------------------KSK-SIKTFLMQIFEKYGNTDIEGV 115 (467)
Q Consensus 66 ~~aL~~agi~~~~Id----~Li~~Tes~~~-------------------------~~p-s~a~~v~~~Lgl~G~~~~~~~ 115 (467)
+++|+++|+++++++ .++++|..+.. ..+ ..+.+|...+|+.| .++
T Consensus 81 ~~AL~dAGl~~~~~~~~r~Gv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~is~~~gl~G----p~~ 156 (406)
T PRK08439 81 REAMKDAGFLPEELDAERFGVSSASGIGGLPNIEKNSIICFEKGPRKISPFFIPSALVNMLGGFISIEHGLKG----PNL 156 (406)
T ss_pred HHHHHHcCCCcccCCCCCEEEEEecCCccHHHHHHHHHHHHhcCccccCchhcccccccHHHHHHHHHhCCCC----Ccc
Confidence 999999999887776 35555532110 011 46778999999843 246
Q ss_pred eeCCcChHHHHHHHHHHHHHHhCCCCCCEEEEEEeecc--c-----cc---------CCC-----------CCCccccce
Q 012253 116 DSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDSA--V-----YA---------EGP-----------ARPTGGAAA 168 (467)
Q Consensus 116 di~~aC~gg~~AL~~A~~~l~a~~~~~~~aLVV~sD~~--~-----y~---------~~~-----------~~~t~GdGA 168 (467)
.+..+|++++.||..|.++|++|.. +.+||+++|.. . |. ..+ +-.+.|+||
T Consensus 157 ~~~~acas~~~Al~~A~~~i~~G~~--d~~lv~g~d~~l~~~~~~~f~~~~~ls~~~~~p~~~~rpfd~~~~G~v~gEGa 234 (406)
T PRK08439 157 SSVTACAAGTHAIIEAVKTIMLGGA--DKMLVVGAESAICPVGIGGFAAMKALSTRNDDPKKASRPFDKDRDGFVMGEGA 234 (406)
T ss_pred ccccHhHHHHHHHHHHHHHHHcCCC--CEEEEecchhccCHHHHHHHHHhCccccCCCCCccCcCCccCCCCcEEeeCce
Confidence 6779999999999999999999977 99999999963 0 10 000 113459999
Q ss_pred eEEEecCC
Q 012253 169 VAMLIGPD 176 (467)
Q Consensus 169 vA~Ll~~~ 176 (467)
+++||++.
T Consensus 235 ~~lvLe~~ 242 (406)
T PRK08439 235 GALVLEEY 242 (406)
T ss_pred EEEEEccH
Confidence 99999974
|
|
| >PRK06445 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.76 E-value=2.8e-08 Score=103.03 Aligned_cols=94 Identities=10% Similarity=0.117 Sum_probs=78.0
Q ss_pred CCCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEeccCCCCCC---cHHHHHHHHhcccCCCCeeEEeeCCcChHHHHHHHH
Q 012253 54 VEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSK---SIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAALFN 130 (467)
Q Consensus 54 ~Ed~~~ma~~Aa~~aL~~agi~~~~Id~Li~~Tes~~~~~p---s~a~~v~~~Lgl~G~~~~~~~di~~aC~gg~~AL~~ 130 (467)
+.+..+|+.+|++++|+++|++|++||.+++|+..+....+ +....+...+ ..++.++++.++|.+|..|+..
T Consensus 29 ~~~~~~L~~~a~~~AL~~agl~~~dID~vi~g~~~~~~~~~~~~~~~~~l~a~~----~~~~p~~~V~~~CaSg~~ai~~ 104 (394)
T PRK06445 29 NIRPEELAAMLINRLIEKTGIKPEEIDDIITGCALQVGENWLYGGRHPIFLARL----PYNIPAMAVDRQCASSLTTVSI 104 (394)
T ss_pred CCCHHHHHHHHHHHHHHHcCCCHHHCCeeEEEeecCCCcccccHHHHHHHHcCC----CCCCcchhhhhhhHHHHHHHHH
Confidence 46789999999999999999999999999999988754323 3333333332 2468899999999999999999
Q ss_pred HHHHHHhCCCCCCEEEEEEeecc
Q 012253 131 CVNWVESASWDGRYGLVVCTDSA 153 (467)
Q Consensus 131 A~~~l~a~~~~~~~aLVV~sD~~ 153 (467)
|...|++|.+ +.+||+++|..
T Consensus 105 A~~~I~sG~~--d~vLv~G~e~m 125 (394)
T PRK06445 105 GAMEIATGMA--DIVIAGGVEHM 125 (394)
T ss_pred HHHHHHcCCC--CEEEEeeeccc
Confidence 9999999977 99999999965
|
|
| >PRK08256 lipid-transfer protein; Provisional | Back alignment and domain information |
|---|
Probab=98.76 E-value=4e-08 Score=101.88 Aligned_cols=106 Identities=21% Similarity=0.133 Sum_probs=83.9
Q ss_pred EEeccceEeeccCCCCCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHhcccCCCCeeEEeeCC
Q 012253 40 TVGLGQDCMAFCSEVEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTN 119 (467)
Q Consensus 40 ~~Gig~r~~av~~~~Ed~~~ma~~Aa~~aL~~agi~~~~Id~Li~~Tes~~~~~ps~a~~v~~~Lgl~G~~~~~~~di~~ 119 (467)
..|.++..+.-.....+..+|++.|++++|+++|+++++||.+++++..+.... ...+...+|+ ..+.++++.+
T Consensus 5 IvG~~~t~~~~~~~~~~~~~La~~A~~~Al~dAGl~~~dID~~~~g~~~~~~~~---~~~~~~~lGl---~~~~~~~v~~ 78 (391)
T PRK08256 5 VAGVGMTPFEKPGASWDYPDMAAEAGRAALADAGIDYDAVQQAYVGYVYGDSTS---GQRALYEVGM---TGIPIVNVNN 78 (391)
T ss_pred EEeccccccccCCCCCCHHHHHHHHHHHHHHHcCCChHHCCeeEEEEEeCCcch---hHHHHHHcCC---CCCCCccccc
Confidence 346666654421224678999999999999999999999999999877654321 2245667787 4466788999
Q ss_pred cChHHHHHHHHHHHHHHhCCCCCCEEEEEEeecc
Q 012253 120 ACYGGTAALFNCVNWVESASWDGRYGLVVCTDSA 153 (467)
Q Consensus 120 aC~gg~~AL~~A~~~l~a~~~~~~~aLVV~sD~~ 153 (467)
+|.+++.||..|..+|++|.. +.+||+++|..
T Consensus 79 ~caSg~~ai~~A~~~I~sG~~--d~vLv~g~e~~ 110 (391)
T PRK08256 79 NCSTGSTALFLARQAVRSGAA--DCALALGFEQM 110 (391)
T ss_pred ccHHHHHHHHHHHHHHHCCCC--CEEEEEEEeec
Confidence 999999999999999999977 99999998864
|
|
| >PRK06157 acetyl-CoA acetyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.75 E-value=6.2e-08 Score=100.61 Aligned_cols=109 Identities=17% Similarity=0.145 Sum_probs=86.7
Q ss_pred eEEeccceEeeccCCCCCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHhcccCCCCeeEEeeC
Q 012253 39 YTVGLGQDCMAFCSEVEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDST 118 (467)
Q Consensus 39 ~~~Gig~r~~av~~~~Ed~~~ma~~Aa~~aL~~agi~~~~Id~Li~~Tes~~~~~ps~a~~v~~~Lgl~G~~~~~~~di~ 118 (467)
+..|.+...+.- ..+.+..+|+.+|++++|+++|++++|||.+++++.............+.+.+|+ +...++.+.
T Consensus 10 ~IvG~g~tp~~~-~~~~~~~~L~~ea~~~AL~dagl~~~dID~v~vg~~~~~~~~~~~~~~~a~~lGl---~~~~~~~v~ 85 (398)
T PRK06157 10 AILGMGCTKFGE-RWDAGAEDLMVEAFLEALADAGIEPKDIDAAWFGTHYDEIGSGKSGTPLSRALRL---PNIPVTRVE 85 (398)
T ss_pred EEEEeccccccc-cCCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEEeccccccccchhHHHHHHcCC---CCCCEEEEe
Confidence 345666554321 2356789999999999999999999999999998764432222334678899998 347788899
Q ss_pred CcChHHHHHHHHHHHHHHhCCCCCCEEEEEEeecc
Q 012253 119 NACYGGTAALFNCVNWVESASWDGRYGLVVCTDSA 153 (467)
Q Consensus 119 ~aC~gg~~AL~~A~~~l~a~~~~~~~aLVV~sD~~ 153 (467)
++|.+++.|++.|...|++|.. +.+||+++|.+
T Consensus 86 ~~c~sg~~ai~~A~~~I~sG~~--d~vlv~G~e~~ 118 (398)
T PRK06157 86 NFCATGSEAFRGAVYAVASGAY--DIALALGVEKL 118 (398)
T ss_pred cccHHHHHHHHHHHHHHHCCCC--CEEEEEEEeec
Confidence 9999999999999999999977 99999999975
|
|
| >PRK08963 fadI 3-ketoacyl-CoA thiolase; Reviewed | Back alignment and domain information |
|---|
Probab=98.71 E-value=6.9e-08 Score=101.17 Aligned_cols=97 Identities=20% Similarity=0.241 Sum_probs=83.4
Q ss_pred CCCCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHhcccCCCCeeEEeeCCcChHHHHHHHHHH
Q 012253 53 EVEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAALFNCV 132 (467)
Q Consensus 53 ~~Ed~~~ma~~Aa~~aL~~agi~~~~Id~Li~~Tes~~~~~ps~a~~v~~~Lgl~G~~~~~~~di~~aC~gg~~AL~~A~ 132 (467)
.+.++.+|+.+|++.+|+++|++|++||.+++|+..+....+.++-.+...+|+ +..+.++.+.++|++|+.|+..|.
T Consensus 25 ~~~~~~eL~~~a~~~al~~agl~~~~ID~vi~G~~~~~~~~~~~ar~~a~~aGl--~~~~P~~tV~~aCaSG~~Ai~~Aa 102 (428)
T PRK08963 25 HGIPAVDLGKMVVGELLARSEIDPELIEQLVFGQVVQMPEAPNIAREIVLGTGM--NVHTDAYSVSRACATSFQAVANVA 102 (428)
T ss_pred CCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEeccCCCCCccHHHHHHHHHCCC--CCCCcceeehhhhHHHHHHHHHHH
Confidence 356789999999999999999999999999999865433234456567888887 446889999999999999999999
Q ss_pred HHHHhCCCCCCEEEEEEeecc
Q 012253 133 NWVESASWDGRYGLVVCTDSA 153 (467)
Q Consensus 133 ~~l~a~~~~~~~aLVV~sD~~ 153 (467)
..|++|.. +.+||++.|.+
T Consensus 103 ~~I~sG~~--dvvLvgG~Esm 121 (428)
T PRK08963 103 ESIMAGTI--DIGIAGGADSS 121 (428)
T ss_pred HHHHCCCC--CEEEEeccccc
Confidence 99999976 99999999976
|
|
| >PRK09116 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed | Back alignment and domain information |
|---|
Probab=98.69 E-value=2e-06 Score=89.67 Aligned_cols=162 Identities=14% Similarity=0.101 Sum_probs=101.3
Q ss_pred ceeEEeEEEEecCCceeehhHHhhhh--CCCc----CeeE--EeccceEeeccC---------C----C-CCHHHHHHHH
Q 012253 7 KNVGILALDIYFPPTCVLQEALEVHD--GVSK----GKYT--VGLGQDCMAFCS---------E----V-EDVISMSLTV 64 (467)
Q Consensus 7 ~~vgI~ai~~y~P~~~v~~~el~~~~--g~~~----~k~~--~Gig~r~~av~~---------~----~-Ed~~~ma~~A 64 (467)
+.|-|.+||+..|-- .+.+++.+.. |.+. .++. .++..+.-...+ . . .....|++.|
T Consensus 2 ~~VvITG~g~vtp~G-~~~~~~~~~L~~g~s~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~r~~~~~~~~al~a 80 (405)
T PRK09116 2 RRVVVTGMGGVTALG-EDWQTIAARLKAGRNAVRRMPEWDRYDGLNTRLAAPIDDFELPAHYTRKKIRSMGRVSLMATRA 80 (405)
T ss_pred CCEEEEeeEEECCCC-CCHHHHHHHHHcCCCCEEeCCchhhccCCCCceEEEecCcChhHhcCHHHHhhCCHHHHHHHHH
Confidence 469999999999976 4666655542 2210 0000 011111000000 0 0 1235689999
Q ss_pred HHHHHHHcCCCc------CCcCEEEEEeccCCC-----------------C--------CC-cHHHHHHHHhcccCCCCe
Q 012253 65 VTSLLEKYKIDP------TQIGRLEVGSETVID-----------------K--------SK-SIKTFLMQIFEKYGNTDI 112 (467)
Q Consensus 65 a~~aL~~agi~~------~~Id~Li~~Tes~~~-----------------~--------~p-s~a~~v~~~Lgl~G~~~~ 112 (467)
++++|+++|++. +.+ .+++||..+.. . .| .++.+|...+++.|
T Consensus 81 a~~Al~dAGl~~~~~~~~~r~-Gv~~Gt~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~is~~~~~~G---- 155 (405)
T PRK09116 81 SELALEDAGLLGDPILTDGRM-GIAYGSSTGSTDPIGAFGTMLLEGSMSGITATTYVRMMPHTTAVNVGLFFGLKG---- 155 (405)
T ss_pred HHHHHHHcCCCCccccCCCcE-EEEEeecccchHHHHHHHHHHhhcCccccChhhhhhhcccHHHHHHHHHhCCCC----
Confidence 999999999842 223 45666643210 0 11 25678888998844
Q ss_pred eEEeeCCcChHHHHHHHHHHHHHHhCCCCCCEEEEEEeeccc------c------c---CCC---CC--------Ccccc
Q 012253 113 EGVDSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDSAV------Y------A---EGP---AR--------PTGGA 166 (467)
Q Consensus 113 ~~~di~~aC~gg~~AL~~A~~~l~a~~~~~~~aLVV~sD~~~------y------~---~~~---~~--------~t~Gd 166 (467)
..+-+..+|++++.||..|.++|++|.. +.+||.++|... + . ..+ .+ ...|+
T Consensus 156 p~~ti~~acas~~~Al~~A~~~I~~G~~--d~~lvgg~d~~~~~~~~~f~~l~~~~~~~~~~~~~~rPfd~~~~G~v~gE 233 (405)
T PRK09116 156 RVIPTSSACTSGSQGIGYAYEAIKYGYQ--TVMLAGGAEELCPTEAAVFDTLFATSTRNDAPELTPRPFDANRDGLVIGE 233 (405)
T ss_pred CcccccchhhhHHHHHHHHHHHHHcCCC--CEEEEecchhcChHHHHHHHHhhhhccCCCCCCCCCCCCcCCCCCEeeec
Confidence 2556788999999999999999999977 899999998631 0 0 000 11 23499
Q ss_pred ceeEEEecCC
Q 012253 167 AAVAMLIGPD 176 (467)
Q Consensus 167 GAvA~Ll~~~ 176 (467)
||+++||++.
T Consensus 234 Ga~~~vLe~~ 243 (405)
T PRK09116 234 GAGTLVLEEL 243 (405)
T ss_pred cEEEEEEccH
Confidence 9999999964
|
|
| >PRK06366 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.3e-07 Score=97.81 Aligned_cols=95 Identities=7% Similarity=0.050 Sum_probs=80.0
Q ss_pred CCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHhcccCCCCeeEEeeCCcChHHHHHHHHHHHH
Q 012253 55 EDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAALFNCVNW 134 (467)
Q Consensus 55 Ed~~~ma~~Aa~~aL~~agi~~~~Id~Li~~Tes~~~~~ps~a~~v~~~Lgl~G~~~~~~~di~~aC~gg~~AL~~A~~~ 134 (467)
.+..+|+.+|++++|+++|+++++||.+++++..+.......+..+...+|+ +..+.++.+.++|.+++.|+..|...
T Consensus 24 ~~~~~L~~~a~~~al~dagi~~~dID~vi~g~~~~~~~~~~~a~~~~~~~Gl--~~~~p~~~v~~~caSg~~av~~Aa~~ 101 (388)
T PRK06366 24 IKAPQLGGAAIKAVIDDAKLDPALVQEVIMGNVIQAGVGQNPAGQAAYHAGL--PFGVTKYTVNVVCASGMLAVESAARE 101 (388)
T ss_pred CCHHHHHHHHHHHHHHHcCCCHHHCCEEEEEecCCCCccCcHHHHHHHHCCC--CCCCcceeeechhhHHHHHHHHHHHH
Confidence 6789999999999999999999999999998764322123446678888888 44577888889999999999999999
Q ss_pred HHhCCCCCCEEEEEEeecc
Q 012253 135 VESASWDGRYGLVVCTDSA 153 (467)
Q Consensus 135 l~a~~~~~~~aLVV~sD~~ 153 (467)
|++|.. +.+||++.|.+
T Consensus 102 I~sG~~--d~vla~G~e~m 118 (388)
T PRK06366 102 IMLGER--DLVIAGGMENM 118 (388)
T ss_pred HhcCCC--CEEEEEeeEcc
Confidence 999977 89999888975
|
|
| >cd00832 CLF Chain-length factor (CLF) is a factor required for polyketide chain initiation of aromatic antibiotic-producing polyketide synthases (PKSs) of filamentous bacteria | Back alignment and domain information |
|---|
Probab=98.68 E-value=7.1e-07 Score=92.81 Aligned_cols=113 Identities=16% Similarity=0.107 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHHHHHcCCCcCCcC----EEEEEeccCCC----------------C-CC---------cHHHHHHHHhcc
Q 012253 57 VISMSLTVVTSLLEKYKIDPTQIG----RLEVGSETVID----------------K-SK---------SIKTFLMQIFEK 106 (467)
Q Consensus 57 ~~~ma~~Aa~~aL~~agi~~~~Id----~Li~~Tes~~~----------------~-~p---------s~a~~v~~~Lgl 106 (467)
...|++.|++++|+++|+++++++ .|++||..+.. . .| ..+.+|...+|+
T Consensus 71 ~~~~~l~aa~eAl~dAGl~~~~~~~~r~Gv~~Gt~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~is~~~gl 150 (399)
T cd00832 71 MTRLALAAADWALADAGVDPAALPPYDMGVVTASAAGGFEFGQRELQKLWSKGPRHVSAYQSFAWFYAVNTGQISIRHGM 150 (399)
T ss_pred HHHHHHHHHHHHHHHcCCCccccCCCceEEEEccCCccHHHHHHHHHHHHhcCccccChhhhhhhhhhHHHHHHHHHhCC
Confidence 357899999999999999876543 36677654321 0 01 245688888888
Q ss_pred cCCCCeeEEeeCCcChHHHHHHHHHHHHHHhCCCCCCEEEEEEeeccc-------c------c--CCC-----------C
Q 012253 107 YGNTDIEGVDSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDSAV-------Y------A--EGP-----------A 160 (467)
Q Consensus 107 ~G~~~~~~~di~~aC~gg~~AL~~A~~~l~a~~~~~~~aLVV~sD~~~-------y------~--~~~-----------~ 160 (467)
.| .++-+..+|++++.||..|.++|++| . +.+||.++|... + . ..+ +
T Consensus 151 ~G----p~~ti~~acaS~~~Al~~A~~~i~~G--~-d~~i~gg~d~~~~p~~~~~~~~~~~ls~~~~p~~~~rPFd~~~~ 223 (399)
T cd00832 151 RG----PSGVVVAEQAGGLDALAQARRLVRRG--T-PLVVSGGVDSALCPWGWVAQLSSGRLSTSDDPARAYLPFDAAAA 223 (399)
T ss_pred CC----CcccccchhHHHHHHHHHHHHHHHcC--C-CeEEEEeeccccCHHHHHHHHhccccCCCCCCCCCcCCCcCCCC
Confidence 43 24556789999999999999999999 6 789999998731 1 0 000 1
Q ss_pred CCccccceeEEEecCC
Q 012253 161 RPTGGAAAVAMLIGPD 176 (467)
Q Consensus 161 ~~t~GdGAvA~Ll~~~ 176 (467)
-.+.|+||+++||++.
T Consensus 224 G~~~gEGa~~lvLe~~ 239 (399)
T cd00832 224 GYVPGEGGAILVLEDA 239 (399)
T ss_pred CEeeeceEEEEEEeeH
Confidence 1345999999999875
|
CLFs have been shown to have decarboxylase activity towards malonyl-acyl carrier protein (ACP). CLFs are similar to other elongation ketosynthase domains, but their active site cysteine is replaced by a conserved glutamine. |
| >PRK06365 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.6e-07 Score=98.43 Aligned_cols=109 Identities=9% Similarity=-0.040 Sum_probs=85.1
Q ss_pred eEEeccceEeeccCCCCCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEeccCCCCCCcH-HHHHHHHhcccCCCCeeEEee
Q 012253 39 YTVGLGQDCMAFCSEVEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSI-KTFLMQIFEKYGNTDIEGVDS 117 (467)
Q Consensus 39 ~~~Gig~r~~av~~~~Ed~~~ma~~Aa~~aL~~agi~~~~Id~Li~~Tes~~~~~ps~-a~~v~~~Lgl~G~~~~~~~di 117 (467)
+..|++...+.-...+.+..+|+++|+++||+++|++++|||.+++++.+........ ...+...+|+ +.+.++.+
T Consensus 19 aIvG~g~Tpfgr~~~~~~~~eL~~eA~~~Al~dagl~~~dID~vv~~~~~~~~~g~~~~~~~~~~~lGl---~~~~~~~v 95 (430)
T PRK06365 19 YMVAAGVTKFDKASPYMDFRERVKKAFDYAMNDAGLTLADIDGSVASYFSDHFQRQLLAGIMVQDYLGL---VPKPSKRI 95 (430)
T ss_pred EEEEeeecCccccCCCCCHHHHHHHHHHHHHHHcCCCHHHcCEEEEecccccccccchhhHHHHHhcCC---CCCceEEE
Confidence 3467776654322235677899999999999999999999999888764433222222 3456788888 44778888
Q ss_pred CCcChHHHHHHHHHHHHHHhCCCCCCEEEEEEeec
Q 012253 118 TNACYGGTAALFNCVNWVESASWDGRYGLVVCTDS 152 (467)
Q Consensus 118 ~~aC~gg~~AL~~A~~~l~a~~~~~~~aLVV~sD~ 152 (467)
.++|+++..|+..|...|++|.+ +.|||+++|.
T Consensus 96 ~~~~aSg~~ai~~A~~~I~sG~~--~~vLv~G~e~ 128 (430)
T PRK06365 96 EGGGATGGLAFQAGYEEIASGRM--DCVAVYGFET 128 (430)
T ss_pred eCCcHHHHHHHHHHHHHHHcCCC--CEEEEEEeee
Confidence 99999999999999999999976 9999999885
|
|
| >PRK08131 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.8e-07 Score=97.19 Aligned_cols=96 Identities=17% Similarity=0.186 Sum_probs=82.8
Q ss_pred CCCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEeccCCCC-CCcHHHHHHHHhcccCCCCeeEEeeCCcChHHHHHHHHHH
Q 012253 54 VEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDK-SKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAALFNCV 132 (467)
Q Consensus 54 ~Ed~~~ma~~Aa~~aL~~agi~~~~Id~Li~~Tes~~~~-~ps~a~~v~~~Lgl~G~~~~~~~di~~aC~gg~~AL~~A~ 132 (467)
+.++.+|+.+|++++|+++|++|++||.+++|+..+.-. ...++..+...+|+ +..+.++.+.++|++|+.|+..|.
T Consensus 23 ~~~~~eL~~~a~~~al~~agi~~~~Id~v~~G~~~~~~~~~~~~ar~~~~~~Gl--p~~~p~~tV~~~CaSG~~Ai~~A~ 100 (401)
T PRK08131 23 SVRPDDLAATVIRRLLEKSGFPGDDIEDVILGCTNQAGEDSRNVARNALLLAGL--PVTVPGQTVNRLCASGLAAVIDAA 100 (401)
T ss_pred CCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEEeccccccccccHHHHHHHhcCC--CCCCceeeeechhhhHHHHHHHHH
Confidence 567899999999999999999999999999998743322 34556667778787 457899999999999999999999
Q ss_pred HHHHhCCCCCCEEEEEEeecc
Q 012253 133 NWVESASWDGRYGLVVCTDSA 153 (467)
Q Consensus 133 ~~l~a~~~~~~~aLVV~sD~~ 153 (467)
..|++|.. +.+||++.|.+
T Consensus 101 ~~I~sG~~--dvvlagG~Esm 119 (401)
T PRK08131 101 RAITCGEG--DLYLAGGVESM 119 (401)
T ss_pred HHHHCCCC--CEEEEEEecCC
Confidence 99999976 99999999976
|
|
| >PLN02644 acetyl-CoA C-acetyltransferase | Back alignment and domain information |
|---|
Probab=98.62 E-value=2.9e-07 Score=95.53 Aligned_cols=96 Identities=9% Similarity=0.047 Sum_probs=80.1
Q ss_pred CCCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHhcccCCCCeeEEeeCCcChHHHHHHHHHHH
Q 012253 54 VEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAALFNCVN 133 (467)
Q Consensus 54 ~Ed~~~ma~~Aa~~aL~~agi~~~~Id~Li~~Tes~~~~~ps~a~~v~~~Lgl~G~~~~~~~di~~aC~gg~~AL~~A~~ 133 (467)
+.+..+|+++|++++|+++|+++++||.+++++.......+..+..+...+|+ +.++.++.+.++|.+++.|+..|..
T Consensus 22 ~~~~~~L~~~a~~~al~dAgl~~~~ID~vv~g~~~~~~~~~~~~~~~~~~~Gl--~~~~p~~~v~~~caSg~~av~~Aa~ 99 (394)
T PLN02644 22 SLSATELGSIAIQAALERAGVDPALVQEVFFGNVLSANLGQAPARQAALGAGL--PPSTICTTVNKVCASGMKAVMLAAQ 99 (394)
T ss_pred CCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEEecCcCCcCCcHHHHHHHhcCC--CCCCceEEEeccchHHHHHHHHHHH
Confidence 46789999999999999999999999999998754322223344567788887 4567788888999999999999999
Q ss_pred HHHhCCCCCCEEEEEEeecc
Q 012253 134 WVESASWDGRYGLVVCTDSA 153 (467)
Q Consensus 134 ~l~a~~~~~~~aLVV~sD~~ 153 (467)
.|++|.. +.+||++.|..
T Consensus 100 ~I~sG~~--d~vlv~G~E~~ 117 (394)
T PLN02644 100 SIQLGIN--DVVVAGGMESM 117 (394)
T ss_pred HHHcCCC--CEEEEEeEEec
Confidence 9999977 99999998866
|
|
| >PRK07850 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.60 E-value=2.4e-07 Score=95.87 Aligned_cols=97 Identities=11% Similarity=0.102 Sum_probs=80.7
Q ss_pred CCCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEeccCCCCC-CcHHHHHHHHhcccCCCCeeEEeeCCcChHHHHHHHHHH
Q 012253 54 VEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKS-KSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAALFNCV 132 (467)
Q Consensus 54 ~Ed~~~ma~~Aa~~aL~~agi~~~~Id~Li~~Tes~~~~~-ps~a~~v~~~Lgl~G~~~~~~~di~~aC~gg~~AL~~A~ 132 (467)
+.++.+|+.+|++.+|++++++|++||.+++|........ ...+-.+...+|+ +.++.++.+.++|++|..|+..|.
T Consensus 23 ~~~~~eL~~~a~~~aL~~agi~~~~Id~v~~G~~~~~~~q~~~~ar~~~l~~Gl--~~~~p~~tV~~~CaSG~~A~~~A~ 100 (387)
T PRK07850 23 GLHAAELLGAVQRAVLDRAGIDPGDVEQVIGGCVTQAGEQSNNITRTAWLHAGL--PYHVGATTIDCQCGSAQQANHLVA 100 (387)
T ss_pred CCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEEeccccccccchHHHHHHHhCCC--CCCCceEEEecccccHHHHHHHHH
Confidence 4468999999999999999999999999999975432211 2244455666787 447999999999999999999999
Q ss_pred HHHHhCCCCCCEEEEEEeeccc
Q 012253 133 NWVESASWDGRYGLVVCTDSAV 154 (467)
Q Consensus 133 ~~l~a~~~~~~~aLVV~sD~~~ 154 (467)
..|++|.. +.+||++.|.+.
T Consensus 101 ~~I~sG~~--dvvla~G~E~mS 120 (387)
T PRK07850 101 GLIAAGAI--DVGIACGVEAMS 120 (387)
T ss_pred HHHHCCCC--CEEEEEeEecCC
Confidence 99999976 999999999883
|
|
| >PRK13359 beta-ketoadipyl CoA thiolase; Provisional | Back alignment and domain information |
|---|
Probab=98.58 E-value=2.9e-07 Score=95.49 Aligned_cols=96 Identities=11% Similarity=0.130 Sum_probs=84.0
Q ss_pred CCCHHHHHHHHHHHHHHH-cCCCcCCcCEEEEEeccCCCC-CCcHHHHHHHHhcccCCCCeeEEeeCCcChHHHHHHHHH
Q 012253 54 VEDVISMSLTVVTSLLEK-YKIDPTQIGRLEVGSETVIDK-SKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAALFNC 131 (467)
Q Consensus 54 ~Ed~~~ma~~Aa~~aL~~-agi~~~~Id~Li~~Tes~~~~-~ps~a~~v~~~Lgl~G~~~~~~~di~~aC~gg~~AL~~A 131 (467)
+.++.+|+..|++.+|++ ++++|++||.+|+|...+... .+.++-.+...+|+ +.++.++.|.++|++|+.|+.+|
T Consensus 23 ~~~~~~L~~~a~~~al~r~a~i~~~~Id~vi~G~~~~~~~~g~~~ar~~~l~~Gl--~~~vp~~tV~~~CaSG~~Av~~A 100 (400)
T PRK13359 23 SVRADDLGAVPLKALVERNPDVDWAAIDDVIYGCANQAGEDNRNVARMSLLLAGL--PHGVPGSTINRLCGSGMDAVGVA 100 (400)
T ss_pred CCCHHHHHHHHHHHHHHhccCCCHHHCCEEEEEeccccccccccHHHHHHHHcCC--CCCCceEEEeccchhHHHHHHHH
Confidence 346799999999999997 599999999999997654322 36678888889898 55799999999999999999999
Q ss_pred HHHHHhCCCCCCEEEEEEeecc
Q 012253 132 VNWVESASWDGRYGLVVCTDSA 153 (467)
Q Consensus 132 ~~~l~a~~~~~~~aLVV~sD~~ 153 (467)
...|++|.. +.+||++.|.+
T Consensus 101 ~~~I~sG~~--divlagGvEsm 120 (400)
T PRK13359 101 ARAIKSGEA--ALMIAGGVESM 120 (400)
T ss_pred HHHHHcCCC--CEEEEeeeecc
Confidence 999999976 99999999987
|
|
| >PRK06633 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.8e-07 Score=96.76 Aligned_cols=97 Identities=10% Similarity=0.140 Sum_probs=83.1
Q ss_pred CCCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHhcccCCCCeeEEeeCCcChHHHHHHHHHHH
Q 012253 54 VEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAALFNCVN 133 (467)
Q Consensus 54 ~Ed~~~ma~~Aa~~aL~~agi~~~~Id~Li~~Tes~~~~~ps~a~~v~~~Lgl~G~~~~~~~di~~aC~gg~~AL~~A~~ 133 (467)
+..+.+|+..|++.+|+++|++|++||.+++|...+.......+..+...+|+ +.++.++.+.++|.+|+.|+..|..
T Consensus 24 ~~~~~~L~~~a~~~al~~agi~~~~Id~vv~G~~~~~~~g~~~~r~~~~~~Gl--~~~~p~~~V~~~CaSG~~Ai~~A~~ 101 (392)
T PRK06633 24 TTPAPMLAAHLIKDILQNSKIDPALVNEVILGQVITGGSGQNPARQTLIHAGI--PKEVPGYTINKVCGSGLKSVALAAN 101 (392)
T ss_pred CCCHHHHHHHHHHHHHHHcCCCHHHcCEEEEEecCccccccHHHHHHHHHCCC--CCCccchhhcchhHHHHHHHHHHHH
Confidence 56799999999999999999999999999999765433234456667778887 4468999999999999999999999
Q ss_pred HHHhCCCCCCEEEEEEeeccc
Q 012253 134 WVESASWDGRYGLVVCTDSAV 154 (467)
Q Consensus 134 ~l~a~~~~~~~aLVV~sD~~~ 154 (467)
.|++|.. +.+||++.|.+.
T Consensus 102 ~I~sG~~--dvvla~G~E~ms 120 (392)
T PRK06633 102 SIMTGDN--EIVIAGGQENMS 120 (392)
T ss_pred HHHcCCC--CEEEEcccccCC
Confidence 9999976 899999999873
|
|
| >TIGR02446 FadI fatty oxidation complex, beta subunit FadI | Back alignment and domain information |
|---|
Probab=98.57 E-value=2.2e-07 Score=97.27 Aligned_cols=112 Identities=19% Similarity=0.170 Sum_probs=85.9
Q ss_pred eEEeccceEeecc---CCCCCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHhcccCCCCeeEE
Q 012253 39 YTVGLGQDCMAFC---SEVEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGV 115 (467)
Q Consensus 39 ~~~Gig~r~~av~---~~~Ed~~~ma~~Aa~~aL~~agi~~~~Id~Li~~Tes~~~~~ps~a~~v~~~Lgl~G~~~~~~~ 115 (467)
|..|.++..+.-. ..+.+..+|+..|++.+|++++++|++||.+++|+..+......++-.+.-..|+ +..+.++
T Consensus 10 ~Ivg~~rTpfgk~~g~~~~~~~~~L~~~a~~~al~~agl~~~~Id~vi~G~~~~~~~~~~~ar~~~l~aGl--~~~~p~~ 87 (430)
T TIGR02446 10 AIVAGLRTPFARQATAFHGIPAVDLGKMVVSELLARSEIDPKLIEQLVFGQVVQMPEAPNIAREIVLGTGM--NVHTDAY 87 (430)
T ss_pred EEEecccCccccCCCCcCCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEEeccCcCccchHHHHHHHhCCC--CCCCchh
Confidence 3445555544311 1356789999999999999999999999999999765432222233333333576 4478999
Q ss_pred eeCCcChHHHHHHHHHHHHHHhCCCCCCEEEEEEeeccc
Q 012253 116 DSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDSAV 154 (467)
Q Consensus 116 di~~aC~gg~~AL~~A~~~l~a~~~~~~~aLVV~sD~~~ 154 (467)
.+.++|++|+.|+..|...|++|.+ +.+||++.|.+.
T Consensus 88 ~V~~~CaSG~~A~~~a~~~I~sG~~--dvvla~G~E~mS 124 (430)
T TIGR02446 88 SVTRACATSFQSAVNVAESIMAGAI--DIGIAGGADSSS 124 (430)
T ss_pred hhhhhhhHHHHHHHHHHHHHHCCCC--CEEEEeeeEccc
Confidence 9999999999999999999999977 999999999883
|
This subunit of the FadJI complex has acetyl-CoA C-acyltransferase (EC 2.3.1.16) activity, and is also known as beta-ketothiolase and fatty oxidation complex, beta subunit, and YfcY. This protein is almost always located adjacent to FadJ (TIGR02440). The FadJI complex is needed for anaerobic beta-oxidation of short-chain fatty acids in E. coli. |
| >PRK09050 beta-ketoadipyl CoA thiolase; Validated | Back alignment and domain information |
|---|
Probab=98.57 E-value=2.8e-07 Score=95.72 Aligned_cols=97 Identities=8% Similarity=0.108 Sum_probs=84.0
Q ss_pred CCCHHHHHHHHHHHHHHH-cCCCcCCcCEEEEEeccCCCC-CCcHHHHHHHHhcccCCCCeeEEeeCCcChHHHHHHHHH
Q 012253 54 VEDVISMSLTVVTSLLEK-YKIDPTQIGRLEVGSETVIDK-SKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAALFNC 131 (467)
Q Consensus 54 ~Ed~~~ma~~Aa~~aL~~-agi~~~~Id~Li~~Tes~~~~-~ps~a~~v~~~Lgl~G~~~~~~~di~~aC~gg~~AL~~A 131 (467)
+.++.+|+..|++.+|++ ++++|++||.+++|+..+... .+..+-.+...+|+ +.++.++.+.++|++|..|+..|
T Consensus 23 ~~~~~~L~~~a~~~al~~~agi~~~~Id~v~~G~~~~~~~~~~~~ar~~~~~~Gl--~~~vP~~tV~~aCaSG~~Ai~~A 100 (401)
T PRK09050 23 SVRADDLGAVPLKALMARNPGVDWEAVDDVIYGCANQAGEDNRNVARMSALLAGL--PVSVPGTTINRLCGSGMDAVGTA 100 (401)
T ss_pred CCCHHHHHHHHHHHHHHhccCCCHHHCCEEEEEeccccccccchHHHHHHHHcCC--CCCCceEEEecccccHHHHHHHH
Confidence 567899999999999996 699999999999997654322 35567778899888 56799999999999999999999
Q ss_pred HHHHHhCCCCCCEEEEEEeeccc
Q 012253 132 VNWVESASWDGRYGLVVCTDSAV 154 (467)
Q Consensus 132 ~~~l~a~~~~~~~aLVV~sD~~~ 154 (467)
...|++|.. +.+||++.|.+.
T Consensus 101 ~~~I~sG~~--dvvlagGvEsmS 121 (401)
T PRK09050 101 ARAIKAGEA--ELMIAGGVESMS 121 (401)
T ss_pred HHHHHCCCC--CEEEEecccccc
Confidence 999999976 999999999873
|
|
| >PTZ00455 3-ketoacyl-CoA thiolase; Provisional | Back alignment and domain information |
|---|
Probab=98.55 E-value=4.7e-07 Score=94.97 Aligned_cols=98 Identities=13% Similarity=0.093 Sum_probs=80.2
Q ss_pred CCCHHHHHHHHHHHHHHHcCCCcCC--cCEEEEEeccCCC--CCCcHHHHHHHHhccc----CCCCeeEEeeCCcChHHH
Q 012253 54 VEDVISMSLTVVTSLLEKYKIDPTQ--IGRLEVGSETVID--KSKSIKTFLMQIFEKY----GNTDIEGVDSTNACYGGT 125 (467)
Q Consensus 54 ~Ed~~~ma~~Aa~~aL~~agi~~~~--Id~Li~~Tes~~~--~~ps~a~~v~~~Lgl~----G~~~~~~~di~~aC~gg~ 125 (467)
+.+..+|+.+|++++|+++|++++| ||.+++|+..... ..+.++..+...+|+. |-..+.++.+.++|.+|+
T Consensus 45 ~~s~~eL~~~a~~~al~~agl~~~d~~ID~vi~G~~~~~~~~~~~~~a~~~~~~~gl~~~~~gl~~~p~~~V~~~caSG~ 124 (438)
T PTZ00455 45 NKTLEELLATAIQGTLENTGLDGKAALVDKVVVGNFLGELFSSQGHLGPAAVGSLGQSGASNALLYKPAMRVEGACASGG 124 (438)
T ss_pred CCCHHHHHHHHHHHHHHHcCCCHHHCCcCEEEEEeccccccccccchHHHHHHhccCcccccccCCCceeEEECcCHHHH
Confidence 5678999999999999999999999 9999998764322 2344566666555542 225677889999999999
Q ss_pred HHHHHHHHHHHhCCCCCCEEEEEEeecc
Q 012253 126 AALFNCVNWVESASWDGRYGLVVCTDSA 153 (467)
Q Consensus 126 ~AL~~A~~~l~a~~~~~~~aLVV~sD~~ 153 (467)
.|+..|...|++|.. +.|||++.|.+
T Consensus 125 ~Ai~~A~~~I~sG~~--dvvlv~G~E~m 150 (438)
T PTZ00455 125 LAVQSAWEALLAGTS--DIALVVGVEVQ 150 (438)
T ss_pred HHHHHHHHHHHCCCC--CEEEEEEEeec
Confidence 999999999999977 99999999986
|
|
| >PRK07967 3-oxoacyl-(acyl carrier protein) synthase I; Reviewed | Back alignment and domain information |
|---|
Probab=98.55 E-value=2.5e-06 Score=88.78 Aligned_cols=163 Identities=13% Similarity=0.133 Sum_probs=102.6
Q ss_pred ceeEEeEEEEecCCceeehhHHhhhh--CC---Cc-CeeE-EeccceEee---cc-----C-----CCCCHHHHHHHHHH
Q 012253 7 KNVGILALDIYFPPTCVLQEALEVHD--GV---SK-GKYT-VGLGQDCMA---FC-----S-----EVEDVISMSLTVVT 66 (467)
Q Consensus 7 ~~vgI~ai~~y~P~~~v~~~el~~~~--g~---~~-~k~~-~Gig~r~~a---v~-----~-----~~Ed~~~ma~~Aa~ 66 (467)
..|-|.+||+..|-- .+.+++.+.. |. .+ ..|. .++..+... +. + .-.....|++.|++
T Consensus 2 ~rVvITG~G~vsp~G-~~~~~~w~~l~~G~sgi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~~~a~~aa~ 80 (406)
T PRK07967 2 RRVVITGLGIVSSIG-NNQQEVLASLREGRSGITFSPEFAEMGMRSQVWGNVKLDPTGLIDRKVMRFMGDASAYAYLAME 80 (406)
T ss_pred CcEEEEcceEECCCC-CCHHHHHHHHHcCCCceeECCcccccCCCCceEEEcCCChhhcCCHHHhhcCCHHHHHHHHHHH
Confidence 479999999999986 4666655542 22 11 1110 111111100 00 0 01124578999999
Q ss_pred HHHHHcCCCcCCcC----EEEEEeccCCC-----------------C---------CC-cHHHHHHHHhcccCCCCeeEE
Q 012253 67 SLLEKYKIDPTQIG----RLEVGSETVID-----------------K---------SK-SIKTFLMQIFEKYGNTDIEGV 115 (467)
Q Consensus 67 ~aL~~agi~~~~Id----~Li~~Tes~~~-----------------~---------~p-s~a~~v~~~Lgl~G~~~~~~~ 115 (467)
++|+++|+++.+++ .+++||..+.. . .+ ..+.+|...||+.| .++
T Consensus 81 ~Al~dAGl~~~~~~~~rvGv~~gs~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~is~~~~l~G----p~~ 156 (406)
T PRK07967 81 QAIADAGLSEEQVSNPRTGLIAGSGGGSTRNQVEAADAMRGPRGPKRVGPYAVTKAMASTVSACLATPFKIKG----VNY 156 (406)
T ss_pred HHHHHcCCCCccCCCCCEEEEEecCCccHHHHHHHHHHHHhccCcccCCchhhcccccchHHHHHHHHHCCCC----Ccc
Confidence 99999998754332 34555532211 0 11 25678899998843 245
Q ss_pred eeCCcChHHHHHHHHHHHHHHhCCCCCCEEEEEEeeccc------cc----------CCC---CC--------Cccccce
Q 012253 116 DSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDSAV------YA----------EGP---AR--------PTGGAAA 168 (467)
Q Consensus 116 di~~aC~gg~~AL~~A~~~l~a~~~~~~~aLVV~sD~~~------y~----------~~~---~~--------~t~GdGA 168 (467)
-+..+|++++.||..|.++|++|.. +.+||.++|... |. ..+ .+ ...|+||
T Consensus 157 tvs~aCas~~~Ai~~A~~~ir~G~~--d~~lvgg~d~~~~~~~~~f~~~~~ls~~~~~~p~~~~rPFd~~r~G~v~gEGa 234 (406)
T PRK07967 157 SISSACATSAHCIGNAVEQIQLGKQ--DIVFAGGGEELDWEMSCLFDAMGALSTKYNDTPEKASRAYDANRDGFVIAGGG 234 (406)
T ss_pred ccccHhHHHHHHHHHHHHHHHcCCC--CEEEEeeecccChHHHHHHHHhhhhccCCCCCCCcCCcCCcCCCCceeeeceE
Confidence 5789999999999999999999977 899999998631 10 000 01 2349999
Q ss_pred eEEEecCC
Q 012253 169 VAMLIGPD 176 (467)
Q Consensus 169 vA~Ll~~~ 176 (467)
+++||++.
T Consensus 235 a~lvLe~~ 242 (406)
T PRK07967 235 GVVVVEEL 242 (406)
T ss_pred EEEEEeeH
Confidence 99999864
|
|
| >PLN02787 3-oxoacyl-[acyl-carrier-protein] synthase II | Back alignment and domain information |
|---|
Probab=98.54 E-value=3e-06 Score=90.95 Aligned_cols=226 Identities=17% Similarity=0.203 Sum_probs=131.3
Q ss_pred ceeEEeEEEEecCCceeehhHHhhhh--CC---Cc-Ce-----eEEec-cc-eEee---ccCC----CCC-HHHHHHHHH
Q 012253 7 KNVGILALDIYFPPTCVLQEALEVHD--GV---SK-GK-----YTVGL-GQ-DCMA---FCSE----VED-VISMSLTVV 65 (467)
Q Consensus 7 ~~vgI~ai~~y~P~~~v~~~el~~~~--g~---~~-~k-----~~~Gi-g~-r~~a---v~~~----~Ed-~~~ma~~Aa 65 (467)
+.|-|.+||+..|-- .+.+++.+.. |. .+ +. |..-+ |. +.+. +.++ .-| ...|++.|+
T Consensus 129 ~rVvITG~G~vtp~G-~~~~~~w~~L~~G~s~i~~~~~f~~~~~~~~~ag~i~~f~~~~~l~~k~~r~md~~~~~al~Aa 207 (540)
T PLN02787 129 RRVVVTGMGVVSPLG-HDPDVFYNNLLEGVSGISEIERFDCSQFPTRIAGEIKSFSTDGWVAPKLSKRMDKFMLYLLTAG 207 (540)
T ss_pred CCEEEEeeEEECCCC-CCHHHHHHHHHcCCCcccccCccchhhCCccccccccccChhhcCCHHHHHhCCHHHHHHHHHH
Confidence 579999999999986 4666655542 22 11 11 11000 10 0000 0000 011 346889999
Q ss_pred HHHHHHcCCCcCC---cC----EEEEEeccCCCC----------------CC---------cHHHHHHHHhcccCCCCee
Q 012253 66 TSLLEKYKIDPTQ---IG----RLEVGSETVIDK----------------SK---------SIKTFLMQIFEKYGNTDIE 113 (467)
Q Consensus 66 ~~aL~~agi~~~~---Id----~Li~~Tes~~~~----------------~p---------s~a~~v~~~Lgl~G~~~~~ 113 (467)
+++|+++|++++. ++ .|++||..+... .| ..+.+|...||+.| .
T Consensus 208 ~eAL~dAGl~~~~~~~~~~~r~GV~vGt~~g~~~~~~~~~~~l~~~~~~~~p~~~~~~~~n~~a~~ia~~~gl~G----p 283 (540)
T PLN02787 208 KKALADGGITEDVMKELDKTKCGVLIGSAMGGMKVFNDAIEALRISYRKMNPFCVPFATTNMGSAMLAMDLGWMG----P 283 (540)
T ss_pred HHHHHHcCCCcccccccCCCceEEEEEeccchHHHHHHHHHHHhhccccCCcchhhhhcccHHHHHHHHHhCCCC----C
Confidence 9999999987642 21 467777543210 01 13567888888743 3
Q ss_pred EEeeCCcChHHHHHHHHHHHHHHhCCCCCCEEEEEEeecc--c-----c---------cCCC-----------CCCcccc
Q 012253 114 GVDSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDSA--V-----Y---------AEGP-----------ARPTGGA 166 (467)
Q Consensus 114 ~~di~~aC~gg~~AL~~A~~~l~a~~~~~~~aLVV~sD~~--~-----y---------~~~~-----------~~~t~Gd 166 (467)
.+.+..||++++.||..|.++|++|.. +.+||.++|.. . | .+.+ +-.+.|+
T Consensus 284 ~~tistACASs~~Ai~~A~~~Ir~G~a--D~aLvGG~d~~l~p~~~~~f~~~~aLS~~~~~p~~~~rPFD~~rdGfv~GE 361 (540)
T PLN02787 284 NYSISTACATSNFCILNAANHIIRGEA--DVMLCGGSDAAIIPIGLGGFVACRALSQRNDDPTKASRPWDMNRDGFVMGE 361 (540)
T ss_pred ccccccccccHHHHHHHHHHHHHcCCC--CEEEEeccccccCHHHHHHHHHHHHhhccCCCcccccCCcccCCCCccccc
Confidence 566789999999999999999999977 89999999963 0 0 0000 1134699
Q ss_pred ceeEEEecCCCC-----ceeecccccccc-cCcccccccCCCCCCceecCcchHHHHHHHHHHHHHHHHHHHHhhhcCCC
Q 012253 167 AAVAMLIGPDAP-----IAFESKLRGSHM-SHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKYFCQKFEKLEGRQF 240 (467)
Q Consensus 167 GAvA~Ll~~~~~-----~~~~~~~~~~~~-~~~~df~~p~~~~~~~~vdG~~s~~~y~~a~~~~~~~~~~~~~~~~~~~~ 240 (467)
||+++||++... -.+...+.|... .+.+....| ..+|.- ...+++.++ .++++
T Consensus 362 GAa~lVLE~~e~A~~rGa~IyA~I~G~g~s~Da~~~t~p-------~p~g~g----~~~am~~AL----------~~AGl 420 (540)
T PLN02787 362 GAGVLLLEELEHAKKRGANIYAEFLGGSFTCDAYHMTEP-------HPEGAG----VILCIEKAL----------AQSGV 420 (540)
T ss_pred ceEEEEEeeHHHHHHCCCeeEEEEEEEEEecCCCCCCCC-------CcCHHH----HHHHHHHHH----------HHcCC
Confidence 999999996421 001101122211 122222222 223422 123333322 33579
Q ss_pred CccccceeccCCchHHHHHH
Q 012253 241 SMLDVDYFVFHSPYNKLVQK 260 (467)
Q Consensus 241 ~~~d~d~~i~H~p~~k~~~k 260 (467)
.++||||+..|-..++..+.
T Consensus 421 ~p~dIdyInaHGTGT~~gD~ 440 (540)
T PLN02787 421 SKEDVNYINAHATSTKAGDL 440 (540)
T ss_pred CHHHCcEEEccCccCCCCCH
Confidence 99999999999987765443
|
|
| >TIGR02430 pcaF beta-ketoadipyl CoA thiolase | Back alignment and domain information |
|---|
Probab=98.52 E-value=6.7e-07 Score=92.82 Aligned_cols=97 Identities=10% Similarity=0.124 Sum_probs=83.5
Q ss_pred CCCHHHHHHHHHHHHHHH-cCCCcCCcCEEEEEeccCCCC-CCcHHHHHHHHhcccCCCCeeEEeeCCcChHHHHHHHHH
Q 012253 54 VEDVISMSLTVVTSLLEK-YKIDPTQIGRLEVGSETVIDK-SKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAALFNC 131 (467)
Q Consensus 54 ~Ed~~~ma~~Aa~~aL~~-agi~~~~Id~Li~~Tes~~~~-~ps~a~~v~~~Lgl~G~~~~~~~di~~aC~gg~~AL~~A 131 (467)
+.++.+|+..|++.+|++ ++++|++||.+++|+...... .+..+-.+...+|+ +.++.++.|.++|++|+.|+..|
T Consensus 22 ~~~~~~L~~~a~~~al~~~a~i~~~~Id~v~~G~~~~~~~~~~~~ar~~~~~~Gl--~~~~p~~~V~~~CaSG~~Ai~~a 99 (400)
T TIGR02430 22 SVRADDLAAVPIKALLARNPQLDWAAIDDVIYGCANQAGEDNRNVARMAALLAGL--PVSVPGTTVNRLCGSGLDAIGMA 99 (400)
T ss_pred CCCHHHHHHHHHHHHHHhccCCCHHHCCEEEEEeccccccccccHHHHHHHHcCC--CCCCceEEeechhhhHHHHHHHH
Confidence 567799999999999996 699999999999997653221 25567778999998 44699999999999999999999
Q ss_pred HHHHHhCCCCCCEEEEEEeeccc
Q 012253 132 VNWVESASWDGRYGLVVCTDSAV 154 (467)
Q Consensus 132 ~~~l~a~~~~~~~aLVV~sD~~~ 154 (467)
...|++|.. +.+||++.|.+.
T Consensus 100 ~~~I~sG~~--d~~la~G~E~ms 120 (400)
T TIGR02430 100 ARAIKAGEA--DLLIAGGVESMS 120 (400)
T ss_pred HHHHHCCCC--CEEEEecccccc
Confidence 999999976 999999999883
|
Members of this family are designated beta-ketoadipyl CoA thiolase, an enzyme that acts at the end of pathways for the degradation of protocatechuate (from benzoate and related compounds) and of phenylacetic acid. |
| >PRK06504 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.50 E-value=6.8e-07 Score=92.50 Aligned_cols=96 Identities=14% Similarity=0.172 Sum_probs=77.8
Q ss_pred CCCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEeccCCCC-CCcHHHHHHHHhcccCCCCeeEEeeCCcChHHHHHHHHHH
Q 012253 54 VEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDK-SKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAALFNCV 132 (467)
Q Consensus 54 ~Ed~~~ma~~Aa~~aL~~agi~~~~Id~Li~~Tes~~~~-~ps~a~~v~~~Lgl~G~~~~~~~di~~aC~gg~~AL~~A~ 132 (467)
+.++.+|+..|++.+|+++++++++||.+++|+..+... .+..+..+.-.-|+ +.++.++.+.++|++|..|+..|.
T Consensus 23 ~~~~~~L~~~a~~~al~~a~l~~~~Id~vi~G~~~~~~~~~~~~ar~~~l~~gl--~~~vP~~tV~~~CaSG~~Ai~~A~ 100 (390)
T PRK06504 23 GWHPADLAAQVLDALVDRSGADPALIEDVIMGCVSQVGEQATNVARNAVLASKL--PESVPGTSIDRQCGSSQQALHFAA 100 (390)
T ss_pred CCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEEeccccccccccHHHHHHHHcCC--CCCCceEEEechhhHHHHHHHHHH
Confidence 567899999999999999999999999999997653221 13333222222255 457889999999999999999999
Q ss_pred HHHHhCCCCCCEEEEEEeecc
Q 012253 133 NWVESASWDGRYGLVVCTDSA 153 (467)
Q Consensus 133 ~~l~a~~~~~~~aLVV~sD~~ 153 (467)
..|++|.+ +.+||++.|.+
T Consensus 101 ~~I~sG~~--dvvLagGvEsm 119 (390)
T PRK06504 101 QAVMSGTM--DIVIAAGVESM 119 (390)
T ss_pred HHHHCCCC--CEEEEeeeeec
Confidence 99999977 99999999987
|
|
| >PRK06519 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed | Back alignment and domain information |
|---|
Probab=98.47 E-value=4.1e-06 Score=86.95 Aligned_cols=166 Identities=13% Similarity=0.056 Sum_probs=105.2
Q ss_pred CCCceeEEeEEEEecCCceeehhHHhhhh--CCCcCee--------EEe-ccceEe-e-ccCC-----CCCHHHHHHHHH
Q 012253 4 WHPKNVGILALDIYFPPTCVLQEALEVHD--GVSKGKY--------TVG-LGQDCM-A-FCSE-----VEDVISMSLTVV 65 (467)
Q Consensus 4 ~~~~~vgI~ai~~y~P~~~v~~~el~~~~--g~~~~k~--------~~G-ig~r~~-a-v~~~-----~Ed~~~ma~~Aa 65 (467)
+.++.|-|.+||+..|-- .+.+++.+.. |.+...+ ..+ +++-.. . +... -.....|++.|+
T Consensus 3 ~~~~rVvITGiG~vsp~G-~~~e~~w~aL~~G~sg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~r~~~~a~~Aa 81 (398)
T PRK06519 3 MQPNDVVITGIGLVSSLG-EGLDAHWNALSAGRPQPNVDTETFAPYPVHPLPEIDWSQQIPKRGDQRQMETWQRLGTYAA 81 (398)
T ss_pred CCCCCEEEEcceEECCCC-CCHHHHHHHHHcCCCCCCCCcccccCcCcccccccChhhcCCchhhhhccCHHHHHHHHHH
Confidence 347889999999999876 3666655553 3321011 000 111000 0 1110 123567899999
Q ss_pred HHHHHHcCCCcC-----CcCEEEEEeccCCC-----------------------------CCC---------cHHHHHHH
Q 012253 66 TSLLEKYKIDPT-----QIGRLEVGSETVID-----------------------------KSK---------SIKTFLMQ 102 (467)
Q Consensus 66 ~~aL~~agi~~~-----~Id~Li~~Tes~~~-----------------------------~~p---------s~a~~v~~ 102 (467)
+++|+++|+++. +++ +++||..+.. ..| ..+..|..
T Consensus 82 ~~Al~dAGl~~~~~~~~r~G-vivGt~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~n~~a~~is~ 160 (398)
T PRK06519 82 GLALDDAGIKGNEELLSTMD-MIVAAGGGERDIAVDTAILNEARKRNDRGVLLNERLMTELRPTLFLAQLSNLLAGNISI 160 (398)
T ss_pred HHHHHHcCCCCCCCCccceE-EEEEeCCCchhHHHhhhhhhcccchhHHHHHHHhcCCCccChhhhhhhhhhHHHHHHHH
Confidence 999999998543 333 4555543321 011 25667888
Q ss_pred HhcccCCCCeeEEeeCCcChHHHHHHHHHHHHHHhCCCCCCEEEEEEeecc-c------cc------CC---C--C----
Q 012253 103 IFEKYGNTDIEGVDSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDSA-V------YA------EG---P--A---- 160 (467)
Q Consensus 103 ~Lgl~G~~~~~~~di~~aC~gg~~AL~~A~~~l~a~~~~~~~aLVV~sD~~-~------y~------~~---~--~---- 160 (467)
.+|+.| .++.+.++|++++.||..|..+|++|.. +.+||.++|.. . |. .. + +
T Consensus 161 ~~gl~G----p~~ti~~acaSg~~Ai~~A~~~I~~G~~--d~~lvGG~d~~~~~~~~~~~~~~~~ls~~~~~p~~d~~~~ 234 (398)
T PRK06519 161 VHKVTG----SSRTFMGEESAGVSAIEIAFARIASGQS--DHALVGGAYNAERPDMLLLYELGGLLLKGGWAPVWSRGGE 234 (398)
T ss_pred HhCCCC----ccccccCCccHHHHHHHHHHHHHHcCCC--CEEEEeeeccccCHHHHHHHHHcCccCCCCCCchhccCcc
Confidence 888844 3566789999999999999999999976 89999999863 1 11 00 0 1
Q ss_pred -C--CccccceeEEEecCCC
Q 012253 161 -R--PTGGAAAVAMLIGPDA 177 (467)
Q Consensus 161 -~--~t~GdGAvA~Ll~~~~ 177 (467)
+ ...|.||+++||++..
T Consensus 235 ~r~G~v~GEGAa~lvLE~~~ 254 (398)
T PRK06519 235 DGGGFILGSGGAFLVLESRE 254 (398)
T ss_pred CCCCeeeeceEEEEEEeeHH
Confidence 1 2349999999999753
|
|
| >PRK08142 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=9.6e-07 Score=91.33 Aligned_cols=104 Identities=8% Similarity=-0.019 Sum_probs=82.6
Q ss_pred eEEeccceEeeccCCCCCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHhcccCCCCeeEEeeC
Q 012253 39 YTVGLGQDCMAFCSEVEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDST 118 (467)
Q Consensus 39 ~~~Gig~r~~av~~~~Ed~~~ma~~Aa~~aL~~agi~~~~Id~Li~~Tes~~~~~ps~a~~v~~~Lgl~G~~~~~~~di~ 118 (467)
+..|+|+..+.. .++.+..+|+.+|++++|+++|++++|||.+++.+..+.. ....+.+.||+ .......+.
T Consensus 8 aIvG~g~t~~~~-~~~~~~~~L~~eA~~~Al~DAgl~~~dID~~~~~~~~~~~----~~~~~~~~lGl---~~~~~~~v~ 79 (388)
T PRK08142 8 YIVGAYEHPTRK-APDKSVAQLHAEVAKGALADAGLSLADVDGYFCAGDAPGL----GPASMVDYLGL---KLRHVDSTE 79 (388)
T ss_pred EEEEEeecccee-CCCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEcCCCCCc----cHHHHHHhCCC---CCeeecccc
Confidence 356888877643 3467789999999999999999999999998753222111 12458899998 345666778
Q ss_pred CcChHHHHHHHHHHHHHHhCCCCCCEEEEEEeec
Q 012253 119 NACYGGTAALFNCVNWVESASWDGRYGLVVCTDS 152 (467)
Q Consensus 119 ~aC~gg~~AL~~A~~~l~a~~~~~~~aLVV~sD~ 152 (467)
++|.++..++..|...|++|.+ +.||||+.|.
T Consensus 80 ~gg~s~~~a~~~A~~~I~sG~~--d~vLvvg~e~ 111 (388)
T PRK08142 80 TGGSSYLAHVGHAAQAIAAGKC--SVALITLAGR 111 (388)
T ss_pred CCcHHHHHHHHHHHHHHHcCCC--CEEEEEeeee
Confidence 8999999999999999999977 9999999875
|
|
| >PRK07801 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=1e-06 Score=91.15 Aligned_cols=110 Identities=13% Similarity=0.096 Sum_probs=79.9
Q ss_pred EEeccceEeeccCC---CCCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEeccC-CCCCCcHHHHHHHHhcccCCCCeeEE
Q 012253 40 TVGLGQDCMAFCSE---VEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETV-IDKSKSIKTFLMQIFEKYGNTDIEGV 115 (467)
Q Consensus 40 ~~Gig~r~~av~~~---~Ed~~~ma~~Aa~~aL~~agi~~~~Id~Li~~Tes~-~~~~ps~a~~v~~~Lgl~G~~~~~~~ 115 (467)
..|.++..+.--.. ..+..+|+.+|++++|+++|+++++||.+++++... ....+..+..+.-..|+ ...+.++
T Consensus 6 Ivg~~~Tpf~~~~~~~~~~~~~~L~~~a~~~al~dagl~~~~ID~vv~g~~~~~~~~~~~~~~~~~l~~gl--~~~~p~~ 83 (382)
T PRK07801 6 IVDAVRTPVGKRKGGLAGVHPADLGAHVLKGLVDRTGIDPAAVDDVIFGCVDTIGPQAGNIARTSWLAAGL--PEEVPGV 83 (382)
T ss_pred EEecccCCccCCCCccCCCCHHHHHHHHHHHHHHHcCCCHHHcCEEEEEeeccCCcccccHHHHHHHHcCC--CCCCcee
Confidence 34666555431111 257899999999999999999999999999985411 11112223322224555 3457788
Q ss_pred eeCCcChHHHHHHHHHHHHHHhCCCCCCEEEEEEeecc
Q 012253 116 DSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDSA 153 (467)
Q Consensus 116 di~~aC~gg~~AL~~A~~~l~a~~~~~~~aLVV~sD~~ 153 (467)
.+.++|.+++.|+..|...|++|.. +.+||++.|.+
T Consensus 84 ~v~~acaSg~~Av~~Aa~~I~sG~~--d~vLv~G~e~m 119 (382)
T PRK07801 84 TVDRQCGSSQQAIHFAAQAVMSGTQ--DLVVAGGVQNM 119 (382)
T ss_pred eecchhhhHHHHHHHHHHHHHCCCC--CEEEEcchhhh
Confidence 8899999999999999999999977 99999888854
|
|
| >PRK08947 fadA 3-ketoacyl-CoA thiolase; Reviewed | Back alignment and domain information |
|---|
Probab=98.45 E-value=7.9e-07 Score=92.02 Aligned_cols=96 Identities=15% Similarity=0.123 Sum_probs=81.1
Q ss_pred CCCHHHHHHHHHHHHHHH-cCCCcCCcCEEEEEeccCCCC-CCcHHHHHHHHhcccCCCCeeEEeeCCcChHHHHHHHHH
Q 012253 54 VEDVISMSLTVVTSLLEK-YKIDPTQIGRLEVGSETVIDK-SKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAALFNC 131 (467)
Q Consensus 54 ~Ed~~~ma~~Aa~~aL~~-agi~~~~Id~Li~~Tes~~~~-~ps~a~~v~~~Lgl~G~~~~~~~di~~aC~gg~~AL~~A 131 (467)
+.+..+|+..|++.+|++ ++++|++||.+++|+..+... ....+..+...+|+ +..+.++.+.++|.+|..|+..|
T Consensus 24 ~~~~~~L~~~~~~~al~~~agl~~~~Id~vi~g~~~~~~~~g~~~ar~~~~~~Gl--~~~~p~~~V~~~caSG~~Ai~~A 101 (387)
T PRK08947 24 NVRAEDLSAHLMRSLLARNPALDPAEIDDIIWGCVQQTLEQGFNIARNAALLAGI--PHSVPAVTVNRLCGSSMQALHDA 101 (387)
T ss_pred CCCHHHHHHHHHHHHHHhccCcChHHhCeEEEEeccccccccccHHHHHHHHcCC--CCCCcceeeechhHHHHHHHHHH
Confidence 566899999999999997 699999999999997653322 24455567777777 44688999999999999999999
Q ss_pred HHHHHhCCCCCCEEEEEEeecc
Q 012253 132 VNWVESASWDGRYGLVVCTDSA 153 (467)
Q Consensus 132 ~~~l~a~~~~~~~aLVV~sD~~ 153 (467)
...|++|.. +.+||++.|.+
T Consensus 102 ~~~I~sG~~--d~vlv~G~E~m 121 (387)
T PRK08947 102 ARAIMTGDG--DVFLIGGVEHM 121 (387)
T ss_pred HHHHHCCCC--CEEEEcccccc
Confidence 999999977 99999999976
|
|
| >PRK07910 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.6e-05 Score=83.28 Aligned_cols=161 Identities=13% Similarity=0.100 Sum_probs=98.9
Q ss_pred ceeEEeEEEEecCCceeehhHHhhhh--CC---Cc--C----e--eEEeccceEe--ec---cCC----CCC-HHHHHHH
Q 012253 7 KNVGILALDIYFPPTCVLQEALEVHD--GV---SK--G----K--YTVGLGQDCM--AF---CSE----VED-VISMSLT 63 (467)
Q Consensus 7 ~~vgI~ai~~y~P~~~v~~~el~~~~--g~---~~--~----k--~~~Gig~r~~--av---~~~----~Ed-~~~ma~~ 63 (467)
+.|-|.+|++..|-- .+.+++.+.. |. .+ . . +...++- .. .+ .++ .-| ..-|++.
T Consensus 12 ~~VvItGig~~sp~g-~~~~~~w~~L~~G~s~i~~~~~~~~~~~~~~~~~~g-~i~~~~d~~~~~~~~~~~d~~~~~~l~ 89 (418)
T PRK07910 12 PNVVVTGIAMTTALA-TDAETTWKLLLDGQSGIRTLDDPFVEEFDLPVRIGG-HLLEEFDHQLTRVELRRMSYLQRMSTV 89 (418)
T ss_pred CCEEEEeeEEECCCC-CCHHHHHHHHHcCCCeeEeCChhhhhccCCCcceEE-EeccCccccCCHHHHhhccHHHHHHHH
Confidence 569999999999875 4677765552 22 10 0 0 0000000 00 00 000 012 3458889
Q ss_pred HHHHHHHHcCC---CcCCcCEEEEEeccCCC-----------------CC--------C-cHHHHHHHHhcccCCCCeeE
Q 012253 64 VVTSLLEKYKI---DPTQIGRLEVGSETVID-----------------KS--------K-SIKTFLMQIFEKYGNTDIEG 114 (467)
Q Consensus 64 Aa~~aL~~agi---~~~~Id~Li~~Tes~~~-----------------~~--------p-s~a~~v~~~Lgl~G~~~~~~ 114 (467)
|++++|+++|+ +++.++. ++||..+.. .. + ..+.+|...+++.| ..
T Consensus 90 aa~~AledAg~~~~~~~r~Gv-~~G~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~is~~~~~~G----~~ 164 (418)
T PRK07910 90 LGRRVWENAGSPEVDTNRLMV-SIGTGLGSAEELVFAYDDMRARGLRAVSPLAVQMYMPNGPAAAVGLERHAKA----GV 164 (418)
T ss_pred HHHHHHHHcCCCCCCcccEEE-EEEEccCccHhHHHHHHHHHhcCcccCChhHHHHhccccHHHHHHHHhCCCC----Cc
Confidence 99999999986 4455554 455543211 00 1 24556777777633 24
Q ss_pred EeeCCcChHHHHHHHHHHHHHHhCCCCCCEEEEEEeecc--c-----c------cC-------CC--------CCCcccc
Q 012253 115 VDSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDSA--V-----Y------AE-------GP--------ARPTGGA 166 (467)
Q Consensus 115 ~di~~aC~gg~~AL~~A~~~l~a~~~~~~~aLVV~sD~~--~-----y------~~-------~~--------~~~t~Gd 166 (467)
+.+..||++++.||..|.++|++|.. +.+||.++|.. . | .. .. +-...|+
T Consensus 165 ~ti~taCaS~~~Al~~A~~~I~~G~~--d~aivgg~~~~~~~~~~~~f~~~~~~ls~~~~~~~~~~rPFd~~~~G~v~gE 242 (418)
T PRK07910 165 ITPVSACASGSEAIAQAWRQIVLGEA--DIAICGGVETRIEAVPIAGFAQMRIVMSTNNDDPAGACRPFDKDRDGFVFGE 242 (418)
T ss_pred ccccchhHHHHHHHHHHHHHHHcCCC--CEEEEccccccCCHHHHHHHHhcCCccccCCCCCCCCcCCCcCCCCCEeeec
Confidence 55679999999999999999999976 89999999873 1 1 00 00 0123599
Q ss_pred ceeEEEecCC
Q 012253 167 AAVAMLIGPD 176 (467)
Q Consensus 167 GAvA~Ll~~~ 176 (467)
||+++||.+.
T Consensus 243 Gaa~vvLe~~ 252 (418)
T PRK07910 243 GGALMVIETE 252 (418)
T ss_pred eEEEEEEeeH
Confidence 9999999875
|
|
| >PRK14691 3-oxoacyl-(acyl carrier protein) synthase II; Provisional | Back alignment and domain information |
|---|
Probab=98.44 E-value=1.1e-05 Score=82.08 Aligned_cols=113 Identities=13% Similarity=0.099 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHHHHHcCC--CcCCcCEEEEEeccCCC----------------C-CC---------cHHHHHHHHhcccC
Q 012253 57 VISMSLTVVTSLLEKYKI--DPTQIGRLEVGSETVID----------------K-SK---------SIKTFLMQIFEKYG 108 (467)
Q Consensus 57 ~~~ma~~Aa~~aL~~agi--~~~~Id~Li~~Tes~~~----------------~-~p---------s~a~~v~~~Lgl~G 108 (467)
...|+..|++++|+++|+ ++++++.+ +||..+.. . .| .++.+|...+|+.|
T Consensus 4 ~~~~~~~a~~~a~~~a~~~~~~~r~Gv~-~G~~~g~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~n~~a~~is~~~~l~G 82 (342)
T PRK14691 4 WWRYKWITFHPSLTHADNTEKQERTATI-IGAGIGGFPAIAHAVRTSDSRGPKRLSPFTVPSFLVNLAAGHVSIKHHFKG 82 (342)
T ss_pred HHHHHHHHHHHHHHhCCCCCCcccEEEE-EecCcccHHHHHHHHHHHHhcCccccChhHHhhhhhhHHHHHHHHHhCCCC
Confidence 457899999999999996 56666555 44433221 0 11 25677888888744
Q ss_pred CCCeeEEeeCCcChHHHHHHHHHHHHHHhCCCCCCEEEEEEeeccc-------c----------cCCC---CC-------
Q 012253 109 NTDIEGVDSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDSAV-------Y----------AEGP---AR------- 161 (467)
Q Consensus 109 ~~~~~~~di~~aC~gg~~AL~~A~~~l~a~~~~~~~aLVV~sD~~~-------y----------~~~~---~~------- 161 (467)
.++-+..+|++++.||..|.++|+.|.. +.+||.++|... | ...+ .+
T Consensus 83 ----p~~ti~~aCaSg~~Al~~A~~~I~~G~~--d~~ivgg~d~~~~~~~~~~f~~~~~ls~~~~~~p~~~~rPFd~~r~ 156 (342)
T PRK14691 83 ----PIGAPVTACAAGVQAIGDAVRMIRNNEA--DVALCGGAEAVIDTVSLAGFAAARALSTHFNSTPEKASRPFDTARD 156 (342)
T ss_pred ----CccccccHhHHHHHHHHHHHHHHHcCCC--CEEEEecccccCCHHHHHHHHHhhhhhcCCCCCCCcCCCCCCCCCC
Confidence 2456789999999999999999999977 899999998731 1 1001 01
Q ss_pred -CccccceeEEEecCC
Q 012253 162 -PTGGAAAVAMLIGPD 176 (467)
Q Consensus 162 -~t~GdGAvA~Ll~~~ 176 (467)
...||||+++||...
T Consensus 157 G~v~gEGAa~lvLes~ 172 (342)
T PRK14691 157 GFVMGEGAGLLIIEEL 172 (342)
T ss_pred CccccceEEEEEEeeH
Confidence 345999999999864
|
|
| >PRK09268 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.44 E-value=1.6e-06 Score=90.70 Aligned_cols=96 Identities=13% Similarity=0.135 Sum_probs=77.4
Q ss_pred CCCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHhcccCCCCeeEEeeCCcChHHHHHHHHHHH
Q 012253 54 VEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAALFNCVN 133 (467)
Q Consensus 54 ~Ed~~~ma~~Aa~~aL~~agi~~~~Id~Li~~Tes~~~~~ps~a~~v~~~Lgl~G~~~~~~~di~~aC~gg~~AL~~A~~ 133 (467)
+.+..+|+.+|++.+|+++++++++||.+++|+..+....+..+..+.-..|+ .....++.+.++|.+|+.|+..|..
T Consensus 28 ~~~~~eL~~~a~~~al~~agl~~~~Id~vv~G~~~~~~~~~~~~r~~~l~~gl--~~~~p~~~V~~~CaSG~~ai~~A~~ 105 (427)
T PRK09268 28 DASNQDMLTAALDGLVDRFGLQGERLGEVVAGAVLKHSRDFNLTRECVLGSAL--SPYTPAYDLQQACGTGLEAAILVAN 105 (427)
T ss_pred CCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEEecccCCccccHHHHHHHHcCC--CCCCceeeeechhhHHHHHHHHHHH
Confidence 46789999999999999999999999999999765422122234443333344 3557888999999999999999999
Q ss_pred HHHhCCCCCCEEEEEEeecc
Q 012253 134 WVESASWDGRYGLVVCTDSA 153 (467)
Q Consensus 134 ~l~a~~~~~~~aLVV~sD~~ 153 (467)
.|++|.. +.+||++.|.+
T Consensus 106 ~I~sG~~--d~vlvgG~E~m 123 (427)
T PRK09268 106 KIALGQI--DSGIAGGVDTT 123 (427)
T ss_pred HHHCCCC--CEEEEeeEEcc
Confidence 9999976 89999999976
|
|
| >TIGR02445 fadA fatty oxidation complex, beta subunit FadA | Back alignment and domain information |
|---|
Probab=98.36 E-value=1.2e-06 Score=90.62 Aligned_cols=96 Identities=15% Similarity=0.141 Sum_probs=78.1
Q ss_pred CCCHHHHHHHHHHHHHHH-cCCCcCCcCEEEEEeccCCCC-CCcHHHHHHHHhcccCCCCeeEEeeCCcChHHHHHHHHH
Q 012253 54 VEDVISMSLTVVTSLLEK-YKIDPTQIGRLEVGSETVIDK-SKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAALFNC 131 (467)
Q Consensus 54 ~Ed~~~ma~~Aa~~aL~~-agi~~~~Id~Li~~Tes~~~~-~ps~a~~v~~~Lgl~G~~~~~~~di~~aC~gg~~AL~~A 131 (467)
+.++.+|+..|++.+|++ ++++|++||.+++|+...... ...++..+.-..|+ +..+.++.+.++|++|..|+..|
T Consensus 22 ~~~~~~L~~~a~~~al~~~agl~~~~Id~v~~G~~~~~~~~g~~~ar~~~~~~g~--~~~~p~~tV~~~CaSG~~Ai~~A 99 (385)
T TIGR02445 22 NTRAEDLSAHLMSKLLARNPKVDPAEVEDIYWGCVQQTLEQGFNIARNAALLAQI--PHTSAAVTVNRLCGSSMQALHDA 99 (385)
T ss_pred CCCHHHHHHHHHHHHHHhccCCCHHHcCEEEEecccccccccchHHHHHHHHCCC--CCCcchhhhhhhhHHHHHHHHHH
Confidence 567889999999999997 599999999999997643221 22344444445565 45588899999999999999999
Q ss_pred HHHHHhCCCCCCEEEEEEeecc
Q 012253 132 VNWVESASWDGRYGLVVCTDSA 153 (467)
Q Consensus 132 ~~~l~a~~~~~~~aLVV~sD~~ 153 (467)
...|++|.. +.+||++.|.+
T Consensus 100 a~~I~sG~~--d~vlagG~E~m 119 (385)
T TIGR02445 100 ARAIMTGDA--DVCLVGGVEHM 119 (385)
T ss_pred HHHHHCCCC--CEEEEeeehhc
Confidence 999999976 89999999976
|
This subunit of the FadBA complex has acetyl-CoA C-acyltransferase (EC 2.3.1.16) activity, and is also known as beta-ketothiolase and fatty oxidation complex, beta subunit. This protein is almost always located adjacent to FadB (TIGR02437). The FadBA complex is the major complex active for beta-oxidation of fatty acids in E. coli. |
| >PRK08257 acetyl-CoA acetyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.34 E-value=3.9e-06 Score=89.49 Aligned_cols=108 Identities=11% Similarity=0.058 Sum_probs=84.5
Q ss_pred EEeccceEeeccCCCC--CHHHHHHHHHHHHHHHcCCC--cCCcCEEEEEeccCCCCCCcHHHHHHHHhcccCCCCeeEE
Q 012253 40 TVGLGQDCMAFCSEVE--DVISMSLTVVTSLLEKYKID--PTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGV 115 (467)
Q Consensus 40 ~~Gig~r~~av~~~~E--d~~~ma~~Aa~~aL~~agi~--~~~Id~Li~~Tes~~~~~ps~a~~v~~~Lgl~G~~~~~~~ 115 (467)
.+|+|+..+.-..++. +..+|+.+|++++|+++|++ +++||.|++++.... ........|.+.||+ .+ ....
T Consensus 8 IVGvG~t~~~~~~~~~~~s~~~L~~eA~~~Al~DAGl~~~~~dID~v~v~~~~~~-~~~~~~~~la~~lGl--~p-~~~~ 83 (498)
T PRK08257 8 IVGVGQVTERPDDPAYGLEPVDLMAAAARAAAADAGADAVLEAIDSVAVVNQLSW-RYRDPPGLLAERLGA--DP-ARTV 83 (498)
T ss_pred EEEeeecccccCCcccCCCHHHHHHHHHHHHHHhcCCCcCHHHCCEEEEeccccc-cccCHHHHHHHHcCC--CC-ccee
Confidence 4699987654212232 78999999999999999999 999999998755322 122345789999998 33 3345
Q ss_pred eeCCcChHHHHHHHHHHHHHHhCCCCCCEEEEEEeecc
Q 012253 116 DSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDSA 153 (467)
Q Consensus 116 di~~aC~gg~~AL~~A~~~l~a~~~~~~~aLVV~sD~~ 153 (467)
....+|.++..+|..|...|++|.+ +.|||+++|..
T Consensus 84 ~~~~GG~s~~~~v~~Aa~~IasG~a--dvVLv~G~E~~ 119 (498)
T PRK08257 84 YSPVGGNSPQRLVNEAALRIAAGEA--DVALVAGAEAQ 119 (498)
T ss_pred EecCCCHHHHHHHHHHHHHHHCCCC--CEEEEeeeeec
Confidence 5667899999999999999999977 99999999985
|
|
| >PRK07855 lipid-transfer protein; Provisional | Back alignment and domain information |
|---|
Probab=98.33 E-value=3.6e-06 Score=87.09 Aligned_cols=102 Identities=9% Similarity=-0.003 Sum_probs=80.1
Q ss_pred eEEeccceEeeccCCCCCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHhcccCCCCeeEEeeC
Q 012253 39 YTVGLGQDCMAFCSEVEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDST 118 (467)
Q Consensus 39 ~~~Gig~r~~av~~~~Ed~~~ma~~Aa~~aL~~agi~~~~Id~Li~~Tes~~~~~ps~a~~v~~~Lgl~G~~~~~~~di~ 118 (467)
+..|+|+..+.- .++.+..+|+.+|++++|+++|++++|||.+++.+.. ..+. ..|.+.||+ .+......+.
T Consensus 7 ~IvG~g~t~~~r-~~~~~~~~L~~eA~~~Al~DAgl~~~dID~~~~~~~~---~~~~--~~l~~~lGl--~~~~~~~~v~ 78 (386)
T PRK07855 7 AIVGIGATEFSK-NSGRSELRLACEAVLAALDDAGLAPSDVDGLVTFTMD---TNPE--IAVARALGI--GELKFFSRIH 78 (386)
T ss_pred EEEEeeeccccc-CCCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEecCc---cccH--HHHHHHCCC--CCCcceeeec
Confidence 346888766532 2456789999999999999999999999999875432 1222 568899998 3323445778
Q ss_pred CcChHHHHHHHHHHHHHHhCCCCCCEEEEEEe
Q 012253 119 NACYGGTAALFNCVNWVESASWDGRYGLVVCT 150 (467)
Q Consensus 119 ~aC~gg~~AL~~A~~~l~a~~~~~~~aLVV~s 150 (467)
++|.++..+|..|...|++|.+ +.|||+++
T Consensus 79 ~gg~sg~~~~~~A~~~I~sG~~--d~vLv~g~ 108 (386)
T PRK07855 79 YGGGAACATVQQAAMAVATGVA--DVVVCYRA 108 (386)
T ss_pred CCcHHHHHHHHHHHHHHHCCCC--CEEEEEee
Confidence 8999999999999999999977 99999977
|
|
| >PRK06066 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.27 E-value=6.4e-06 Score=85.01 Aligned_cols=105 Identities=12% Similarity=0.073 Sum_probs=76.9
Q ss_pred EEeccceEeeccCCCCCHHHHHHHHHHHHHHHcC-CCc-CCcCEEEEEeccCCCCCCcHHHHHHHHhcccCCCCeeEEee
Q 012253 40 TVGLGQDCMAFCSEVEDVISMSLTVVTSLLEKYK-IDP-TQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDS 117 (467)
Q Consensus 40 ~~Gig~r~~av~~~~Ed~~~ma~~Aa~~aL~~ag-i~~-~~Id~Li~~Tes~~~~~ps~a~~v~~~Lgl~G~~~~~~~di 117 (467)
..|+|+..+.-..++.+..+|+.+|++++|+++| +++ +|||.+++++........-....+.+.||+.+. ..+-+
T Consensus 8 IvG~g~t~~~~~~~~~s~~eL~~eA~~~Al~DAG~l~~~~dId~~~~~~~~~~~~~~~~~~~~~~~lg~~~~---~~~~v 84 (385)
T PRK06066 8 IVGIGWYGFRPTTPEVSFREMMFEAASRAYKDAGNINPRRDVDSFISCQEDFWEGIAIADEFAPDQIGGAMR---PTMTV 84 (385)
T ss_pred EEEeeecCCcCCCCCCCHHHHHHHHHHHHHHhcCCCCChhcCCEEEEecCcccCcccccchhHHHHcccCCC---CeEEE
Confidence 4688877754223468899999999999999999 997 799999886421111111122356688887322 22223
Q ss_pred CCcChHHHHHHHHHHHHHHhCCCCCCEEEEEEeec
Q 012253 118 TNACYGGTAALFNCVNWVESASWDGRYGLVVCTDS 152 (467)
Q Consensus 118 ~~aC~gg~~AL~~A~~~l~a~~~~~~~aLVV~sD~ 152 (467)
|.++..++..|...|++|.+ +.|||++.+.
T Consensus 85 ---~~sg~~a~~~A~~aV~sG~~--d~vLv~g~~~ 114 (385)
T PRK06066 85 ---AGDGLQGLAHAVMHINSGLA--NVVVVEAHSK 114 (385)
T ss_pred ---eCcHHHHHHHHHHHHHcCCC--CEEEEEEEee
Confidence 88999999999999999987 9999999874
|
|
| >PF00109 ketoacyl-synt: Beta-ketoacyl synthase, N-terminal domain; InterPro: IPR014030 Beta-ketoacyl-ACP synthase 2 | Back alignment and domain information |
|---|
Probab=98.24 E-value=6e-06 Score=80.06 Aligned_cols=113 Identities=23% Similarity=0.221 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHHHHHcCCCcCCc-----CEEEEEeccCCC---------------CC--------C-cHHHHHHHHhccc
Q 012253 57 VISMSLTVVTSLLEKYKIDPTQI-----GRLEVGSETVID---------------KS--------K-SIKTFLMQIFEKY 107 (467)
Q Consensus 57 ~~~ma~~Aa~~aL~~agi~~~~I-----d~Li~~Tes~~~---------------~~--------p-s~a~~v~~~Lgl~ 107 (467)
..-|++.|+.+||+++|+++.++ =.|++||..+.+ .. + ..+..|...||+.
T Consensus 87 ~~~~~l~aa~~Al~dAg~~~~~~~~~~r~gv~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~~gl~ 166 (254)
T PF00109_consen 87 QSRLALAAAREALEDAGLDPDDLDGERRVGVFVGSSSGDYEFYRALDEDGETPRDVSPWFVPNTLPNSAAGRIAILFGLR 166 (254)
T ss_dssp HHHHHHHHHHHHHHHHTSTGGGHTGGGTEEEEEEESSSHHHHHHHHHHHTTCGGGSHTTHHHHHSTTHHHHHHHHHHTB-
T ss_pred hhhHHHHHhhhhcccccccccccccccceeeccccccccccccccccccccccccccccccCcccccccccchhhhcCCC
Confidence 56899999999999999998543 235567766521 01 1 2567899999984
Q ss_pred CCCCeeEEeeCCcChHHHHHHHHHHHHHHhCCCCCCEEEEEEeecc-c------------ccCC-C--------CCCccc
Q 012253 108 GNTDIEGVDSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDSA-V------------YAEG-P--------ARPTGG 165 (467)
Q Consensus 108 G~~~~~~~di~~aC~gg~~AL~~A~~~l~a~~~~~~~aLVV~sD~~-~------------y~~~-~--------~~~t~G 165 (467)
| .++-+..+|++++.||..|.++|++|.. +.+||.++|.. . .... + +-...|
T Consensus 167 G----~~~tv~~acaSgl~Al~~A~~~I~~G~~--d~~lvgg~d~~~~~~~~~~~~~~~~~s~~~~~~pf~~~~~G~v~g 240 (254)
T PF00109_consen 167 G----PSYTVSTACASGLAALEAAYRAIRSGEA--DVALVGGVDAPLSPFILAGFSALGALSADGPCRPFDPFADGFVLG 240 (254)
T ss_dssp S----SEEEEE-GGGHHHHHHHHHHHHHHTTSS--SEEEEEEEE--SSHHHHHHHHHTTBB-TTSGGGSTBTTB-SB-BB
T ss_pred C----ccccccccccccccccchhccccccccc--cccccccccccccccccccccccccccccccccccCCCCCCEEEE
Confidence 3 2556789999999999999999999977 99999999943 0 1111 1 113569
Q ss_pred cceeEEEecC
Q 012253 166 AAAVAMLIGP 175 (467)
Q Consensus 166 dGAvA~Ll~~ 175 (467)
+||+++||.+
T Consensus 241 EGa~~~vLe~ 250 (254)
T PF00109_consen 241 EGAGALVLER 250 (254)
T ss_dssp -EEEEEEEEE
T ss_pred CceEEEEEEE
Confidence 9999999975
|
3.1.41 from EC (KAS) [] is the enzyme that catalyzes the condensation of malonyl-ACP with the growing fatty acid chain. It is found as a component of a number of enzymatic systems, including fatty acid synthetase (FAS), which catalyzes the formation of long-chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH; the multi-functional 6-methysalicylic acid synthase (MSAS) from Penicillium patulum [], which is involved in the biosynthesis of a polyketide antibiotic; polyketide antibiotic synthase enzyme systems; Emericella nidulans multifunctional protein Wa, which is involved in the biosynthesis of conidial green pigment; Rhizobium nodulation protein nodE, which probably acts as a beta-ketoacyl synthase in the synthesis of the nodulation Nod factor fatty acyl chain; and yeast mitochondrial protein CEM1. The condensation reaction is a two step process, first the acyl component of an activated acyl primer is transferred to a cysteine residue of the enzyme and is then condensed with an activated malonyl donor with the concomitant release of carbon dioxide. This entry represents the N-terminal domain of beta-ketoacyl-ACP synthases. ; PDB: 1J3N_B 3KZU_C 1W0I_A 2IX4_A 1F91_B 2BYZ_D 2AQB_C 2BZ3_C 1H4F_C 2VB9_B .... |
| >PF07451 SpoVAD: Stage V sporulation protein AD (SpoVAD); InterPro: IPR010894 This family contains the bacterial stage V sporulation protein AD (SpoVAD), which is approximately 340 residues long | Back alignment and domain information |
|---|
Probab=98.16 E-value=0.00033 Score=68.55 Aligned_cols=178 Identities=17% Similarity=0.095 Sum_probs=99.0
Q ss_pred HHHHHHHHHHHHHHHcCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHhcccCCCCeeEEeeCCcChHHHHHHHHHHHHHH
Q 012253 57 VISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAALFNCVNWVE 136 (467)
Q Consensus 57 ~~~ma~~Aa~~aL~~agi~~~~Id~Li~~Tes~~~~~ps~a~~v~~~Lgl~G~~~~~~~di~~aC~gg~~AL~~A~~~l~ 136 (467)
-..|-.+|++.+|+++++.++|||.++-|---..- -.+++.++.|++ | -+-+-.||+.+..+|.+|.-+|.
T Consensus 51 E~~m~~~A~~~al~Ka~l~~~dId~~~aGDLlnQ~---i~s~f~ar~l~i---P---f~GlygACST~~e~l~laa~~vd 121 (329)
T PF07451_consen 51 ESKMQKEAVELALKKAGLKKEDIDYLFAGDLLNQI---ISSSFAARDLGI---P---FLGLYGACSTMMESLALAAMLVD 121 (329)
T ss_dssp HHHHHHHHHHHHHHHTT--GGG-SEEEEEETTCCC---CHHHHHHHHHT--------EEEB--CCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCeEEEehhhhhhh---HHHHHHHHhcCC---C---ccchhhHHHHHHHHHHHHHHHHh
Confidence 36788899999999999999999999987543332 457899999886 3 66778999999999999999999
Q ss_pred hCCCCCCEEEEEEeecc-------cccCCC--CC-Ccc---ccceeEEEecCCCC-ceeecccccccccCcccccccCCC
Q 012253 137 SASWDGRYGLVVCTDSA-------VYAEGP--AR-PTG---GAAAVAMLIGPDAP-IAFESKLRGSHMSHAYDFYKPNLA 202 (467)
Q Consensus 137 a~~~~~~~aLVV~sD~~-------~y~~~~--~~-~t~---GdGAvA~Ll~~~~~-~~~~~~~~~~~~~~~~df~~p~~~ 202 (467)
+|.+ +++|+.+|-=. ||.... -+ +|. =-||.|+||++.+. ..+ ...-.-.+-|+-.-+.
T Consensus 122 gg~a--~~vla~tSSH~~tAERQfR~P~EyG~Qrp~tAqwTVTGaGa~il~~~~~~p~I----t~~T~GkVvD~G~~D~- 194 (329)
T PF07451_consen 122 GGFA--DYVLAATSSHFATAERQFRFPTEYGGQRPPTAQWTVTGAGAAILSKEGSGPRI----THATIGKVVDMGIKDP- 194 (329)
T ss_dssp TTS---SEEEEEEEE-CCHHHHHT---GGGT----TT--EE--EEEEEEEESS--SEEE----EEEE----B-SS---T-
T ss_pred CCCc--ceEEEEeccccchhhhhccCchhccCCCCCcccEEEeceEEEEEecCCCCcEE----EEEEEEEEEEcCCCCc-
Confidence 9977 89998876432 444321 12 111 45677889988753 222 1111122333321110
Q ss_pred CCCceecCcchHHHHHHHHH-HHHHHHHHHHHhhhcCCCCccccceeccCCchHHHHHHHHHhhh
Q 012253 203 SEYPVVDGKLSQTCYLMALD-SCYKYFCQKFEKLEGRQFSMLDVDYFVFHSPYNKLVQKSFARLF 266 (467)
Q Consensus 203 ~~~~~vdG~~s~~~y~~a~~-~~~~~~~~~~~~~~~~~~~~~d~d~~i~H~p~~k~~~k~~~~l~ 266 (467)
.. --.++. .+++.+.+.+ .+.+.+++|.|.++.-- -.+...+++..|+
T Consensus 195 ---------~n---MGaAMAPAA~dTI~~h~---~D~g~~p~dYDlIvTGD-Lg~vG~~il~~Ll 243 (329)
T PF07451_consen 195 ---------NN---MGAAMAPAAADTIEQHF---KDTGRSPDDYDLIVTGD-LGKVGRKILRDLL 243 (329)
T ss_dssp ---------T----HHHHHHHHHHHHHHHHH---HHCT--GGG-SEEEESS--HHHHHHHHHHHH
T ss_pred ---------cc---chhhHhHHHHHHHHHHH---HHhCCChhhcCeEEecc-hHHHHHHHHHHHH
Confidence 00 112332 2333344443 45678899999988643 3455566666664
|
This is one of six proteins encoded by the spoVA operon, which is transcribed exclusively in the forespore at about the time of dipicolinic acid (DPA) synthesis in the mother cell. The functions of the proteins encoded by the spoVA operon are unknown, but it has been suggested they are involved in DPA transport during sporulation [].; PDB: 3LMA_D 3LM6_A. |
| >PRK06025 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.15 E-value=1.3e-05 Score=83.09 Aligned_cols=96 Identities=13% Similarity=0.100 Sum_probs=84.8
Q ss_pred CCCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEeccCCCC-CCcHHHHHHHHhcccCCCCeeEEeeCCcChHHHHHHHHHH
Q 012253 54 VEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDK-SKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAALFNCV 132 (467)
Q Consensus 54 ~Ed~~~ma~~Aa~~aL~~agi~~~~Id~Li~~Tes~~~~-~ps~a~~v~~~Lgl~G~~~~~~~di~~aC~gg~~AL~~A~ 132 (467)
+-++.+|++.+.+.+|++++++|++||-||+|...+... ...++-...-..|+ +..+.++.++..|.+|+.|+.+|.
T Consensus 26 ~~~~~~L~~~~~~~~l~r~~i~~~~id~vi~G~~~~~g~~g~n~aR~~al~agl--p~~vp~~tvnr~C~Sgl~ai~~aa 103 (417)
T PRK06025 26 HLHPQHLAATVLKALAERNGLNTADVDDIIWSTSSQRGKQGGDLGRMAALDAGY--DIKASGVTLDRFCGGGITSVNLAA 103 (417)
T ss_pred CCCHHHHHHHHHHHHHHhcCCCHHHCCEEEEEcCCCcCcccCcHHHHHHHhCCC--CCCCCeeeeccccchHHHHHHHHH
Confidence 567999999999999999999999999999998765433 35677777777787 788999999999999999999999
Q ss_pred HHHHhCCCCCCEEEEEEeecc
Q 012253 133 NWVESASWDGRYGLVVCTDSA 153 (467)
Q Consensus 133 ~~l~a~~~~~~~aLVV~sD~~ 153 (467)
..|++|.. +.+|+.+.|.+
T Consensus 104 ~~I~~G~~--~~~laGG~Esm 122 (417)
T PRK06025 104 AQIMSGME--DLVIAGGTEMM 122 (417)
T ss_pred HHHHcCCC--CEEEEeeeecc
Confidence 99999965 89999999988
|
|
| >PRK06690 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.99 E-value=3.1e-05 Score=79.33 Aligned_cols=91 Identities=13% Similarity=0.173 Sum_probs=76.0
Q ss_pred CCCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHhcccCCCCeeEEeeCCcChHHHHHHHHHHH
Q 012253 54 VEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAALFNCVN 133 (467)
Q Consensus 54 ~Ed~~~ma~~Aa~~aL~~agi~~~~Id~Li~~Tes~~~~~ps~a~~v~~~Lgl~G~~~~~~~di~~aC~gg~~AL~~A~~ 133 (467)
+..+.+|+..|++.+++ |++ ++||.+++|...+.. ...+..+...+|+ +..+.++.+.++|.+|+.|+..|..
T Consensus 22 ~~~~~~L~~~a~~~~~~--gi~-~~Id~vi~G~~~~~~--~~~~r~~~~~~Gl--~~~~p~~tV~~~CaSG~~Ai~~a~~ 94 (361)
T PRK06690 22 DYEVQQLAAPLLTFLSK--GME-REIDDVILGNVVGPG--GNVARLSALEAGL--GLHIPGVTIDRQCGAGLEAIRTACH 94 (361)
T ss_pred CCCHHHHHHHHHHHHHc--cch-hhcCEEEEEecCCCc--chHHHHHHHHcCC--CCCCCceehhhhhhHHHHHHHHHHH
Confidence 35689999999999865 786 899999999775542 3344457778787 4478999999999999999999999
Q ss_pred HHHhCCCCCCEEEEEEeecc
Q 012253 134 WVESASWDGRYGLVVCTDSA 153 (467)
Q Consensus 134 ~l~a~~~~~~~aLVV~sD~~ 153 (467)
+|++|.. +.+||++.|.+
T Consensus 95 ~I~sG~~--d~~l~gG~E~m 112 (361)
T PRK06690 95 FIQGGAG--KCYIAGGVEST 112 (361)
T ss_pred HHHCCCC--CEEEEeccccc
Confidence 9999976 89999999987
|
|
| >TIGR02813 omega_3_PfaA polyketide-type polyunsaturated fatty acid synthase PfaA | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.00028 Score=87.55 Aligned_cols=137 Identities=15% Similarity=0.121 Sum_probs=85.2
Q ss_pred HHHHHHHHhcccCCCCeeEEeeCCcChHHHHHHHHHHHHHHhCCCCCCEEEEEEeecc----c---ccC-------C---
Q 012253 96 IKTFLMQIFEKYGNTDIEGVDSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDSA----V---YAE-------G--- 158 (467)
Q Consensus 96 ~a~~v~~~Lgl~G~~~~~~~di~~aC~gg~~AL~~A~~~l~a~~~~~~~aLVV~sD~~----~---y~~-------~--- 158 (467)
++.+|...|++.| .++-+..||++++.||..|+++|++|.. +.+||.++|.. . |.. +
T Consensus 185 ~A~RIS~~f~L~G----ps~tVdtACsSSL~Al~~A~~~L~~G~~--D~alvGGv~~~~~p~~~~~fs~~~~lS~~g~cr 258 (2582)
T TIGR02813 185 ISGRIANRFDLGG----MNCVVDAACAGSLAAIRMALSELLEGRS--EMMITGGVCTDNSPFMYMSFSKTPAFTTNEDIQ 258 (2582)
T ss_pred HHHHHHHHhCCCC----CcccccchhHHHHHHHHHHHHHHHcCCC--CEEEEecceeeCCHHHHHHHHhccCcCCCCCcc
Confidence 5778899999843 2566789999999999999999999976 89999888763 1 111 1
Q ss_pred --C---CCCccccceeEEEecCCCC-c----eeecccccccccCcc---cccccCCCCCCceecCcchHHHHHHHHHHHH
Q 012253 159 --P---ARPTGGAAAVAMLIGPDAP-I----AFESKLRGSHMSHAY---DFYKPNLASEYPVVDGKLSQTCYLMALDSCY 225 (467)
Q Consensus 159 --~---~~~t~GdGAvA~Ll~~~~~-~----~~~~~~~~~~~~~~~---df~~p~~~~~~~~vdG~~s~~~y~~a~~~~~ 225 (467)
+ +-...|.|++++||.+-.. . .+..-+.|+...+.. ..+.| ..+|+ .+++..++
T Consensus 259 pFD~~adG~v~GEGag~vvLkrL~dA~~dGd~IyAvI~G~g~~~DG~~~~itaP-------~~~gq------~~~i~~Al 325 (2582)
T TIGR02813 259 PFDIDSKGMMIGEGIGMMALKRLEDAERDGDRIYAVIKGVGASSDGKFKSIYAP-------RPEGQ------AKALKRAY 325 (2582)
T ss_pred CCCCCCCcccccceEEEEEeCcHHHHHhCCCcEEEEEEEEEEcCCCCCCCCcCC-------CHHHH------HHHHHHHH
Confidence 0 1234599999999987421 0 011112222222111 11222 22231 22333322
Q ss_pred HHHHHHHHhhhcCCCCccccceeccCCchHHHHHHH
Q 012253 226 KYFCQKFEKLEGRQFSMLDVDYFVFHSPYNKLVQKS 261 (467)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~d~d~~i~H~p~~k~~~k~ 261 (467)
..+|+.++||+|+-.|-..++..+.+
T Consensus 326 ----------~~Agi~p~~I~yIeaHGTGT~~gD~~ 351 (2582)
T TIGR02813 326 ----------DDAGFAPHTCGLIEAHGTGTAAGDVA 351 (2582)
T ss_pred ----------HHcCCCHHHCCEEEecCCCCCCCCHH
Confidence 34579999999999999887765543
|
Members of the seed for this alignment are involved in omega-3 polyunsaturated fatty acid biosynthesis, such as the protein PfaA from the eicosapentaenoic acid biosynthesis operon in Photobacterium profundum strain SS9. PfaA is encoded together with PfaB, PfaC, and PfaD, and the functions of the individual polypeptides have not yet been described. More distant homologs of PfaA, also included with the reach of this model, appear to be involved in polyketide-like biosynthetic mechanisms of polyunsaturated fatty acid biosynthesis, an alternative to the more familiar iterated mechanism of chain extension and desaturation, and in most cases are encoded near genes for homologs of PfaB, PfaC, and/or PfaD. |
| >PRK07937 lipid-transfer protein; Provisional | Back alignment and domain information |
|---|
Probab=97.97 E-value=4.8e-05 Score=77.71 Aligned_cols=107 Identities=14% Similarity=0.071 Sum_probs=71.2
Q ss_pred eEEeccceEeeccCCCCCH-HHHHHHHHHHHHHHcCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHhcccCCCCeeEEee
Q 012253 39 YTVGLGQDCMAFCSEVEDV-ISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDS 117 (467)
Q Consensus 39 ~~~Gig~r~~av~~~~Ed~-~~ma~~Aa~~aL~~agi~~~~Id~Li~~Tes~~~~~ps~a~~v~~~Lgl~G~~~~~~~di 117 (467)
+..|+|+..+...++..+. .+|+.+|++++|+++|++++|||.++.++.-...........+...+|+ .+.....-+
T Consensus 5 aIvG~g~t~~~~~~~~~~~~~el~~eA~~~Al~DAgl~~~dID~~~~~~~~~~~~~~~~~~~~~~~~G~--~~~~~~~~v 82 (352)
T PRK07937 5 AVVGFAQAPHVRRTDGTTNGVEMLMPCFAELYAELGITKSDIGFWCSGSSDYLAGRAFSFISAIDSIGA--VPPINESHV 82 (352)
T ss_pred EEEEeeccccccCCCCCCcHHHHHHHHHHHHHHHcCCCHHHCCEEEEEccccccccccchhhHHhhccC--CCCCceEEe
Confidence 3468888876432223344 8999999999999999999999988654321111111112334455665 232222222
Q ss_pred CCcChHHHHHHHHHHHHHHhCCCCCCEEEEEEeec
Q 012253 118 TNACYGGTAALFNCVNWVESASWDGRYGLVVCTDS 152 (467)
Q Consensus 118 ~~aC~gg~~AL~~A~~~l~a~~~~~~~aLVV~sD~ 152 (467)
. .+|..||..|...|++|.. +.|||++.+.
T Consensus 83 ~---~~g~~a~~~A~~aI~sG~~--d~VLv~g~~k 112 (352)
T PRK07937 83 E---MDAAWALYEAWVKLLTGEV--DTALVYGFGK 112 (352)
T ss_pred c---CcHHHHHHHHHHHHhcCCC--CEEEEEEecc
Confidence 2 3577899999999999987 9999999875
|
|
| >KOG1406 consensus Peroxisomal 3-ketoacyl-CoA-thiolase P-44/SCP2 [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.79 E-value=5.2e-05 Score=72.16 Aligned_cols=109 Identities=19% Similarity=0.151 Sum_probs=84.4
Q ss_pred CeeEEeccceEeeccC--CCCCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHhcccCCCCeeE
Q 012253 37 GKYTVGLGQDCMAFCS--EVEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEG 114 (467)
Q Consensus 37 ~k~~~Gig~r~~av~~--~~Ed~~~ma~~Aa~~aL~~agi~~~~Id~Li~~Tes~~~~~ps~a~~v~~~Lgl~G~~~~~~ 114 (467)
.-|..|+|..++--+. ++-|-.+|+.+|..++|+++++..++|+.-++|-..++-.. .-.-.-.+|+ ..++.
T Consensus 7 rvyvvgvgmtkf~kpg~~~~~dypd~a~ea~tkal~da~ikys~vqqa~vgyvfgdstc---gqraiyevgm---tgipi 80 (408)
T KOG1406|consen 7 RVYVVGVGMTKFEKPGRVADWDYPDFAKEAITKALQDAGIKYSEVQQAVVGYVFGDSTC---GQRAIYEVGM---TGIPI 80 (408)
T ss_pred eEEEEecceeeecCCCcccCCCCchHHHHHHHHHHHhcCCCHHHHHhhhheeeecCCcc---chHHHHhccc---cCcce
Confidence 4466788888754332 34577899999999999999999999887776654444221 1122236666 77889
Q ss_pred EeeCCcChHHHHHHHHHHHHHHhCCCCCCEEEEEEeecc
Q 012253 115 VDSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDSA 153 (467)
Q Consensus 115 ~di~~aC~gg~~AL~~A~~~l~a~~~~~~~aLVV~sD~~ 153 (467)
|.++|+|+.|-.||.+|...|++|.. ..||..+-|.+
T Consensus 81 ~nvnnncatgssalflakqiiesgn~--dcvlalgfekm 117 (408)
T KOG1406|consen 81 YNVNNNCATGSSALFLAKQIIESGNS--DCVLALGFEKM 117 (408)
T ss_pred eeccCccccCchHHHHHHHHHhcCCc--ceEEeechhhh
Confidence 99999999999999999999999976 89999998887
|
|
| >COG0304 FabB 3-oxoacyl-(acyl-carrier-protein) synthase [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00048 Score=71.51 Aligned_cols=180 Identities=17% Similarity=0.225 Sum_probs=111.7
Q ss_pred CHHHHHHHHHHHHHHHcCCC-cCCcC---EEEEEeccCCCC--------------------------CC-cHHHHHHHHh
Q 012253 56 DVISMSLTVVTSLLEKYKID-PTQIG---RLEVGSETVIDK--------------------------SK-SIKTFLMQIF 104 (467)
Q Consensus 56 d~~~ma~~Aa~~aL~~agi~-~~~Id---~Li~~Tes~~~~--------------------------~p-s~a~~v~~~L 104 (467)
....+++.|+.+||+++|++ ...++ .+++||..+... .+ ..+..|+..+
T Consensus 70 ~~~~~a~~Aa~eAl~dAgl~~~~~~~~r~gv~iGsg~gg~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~vs~~~ 149 (412)
T COG0304 70 RFSQLAVVAAVEALEDAGLDNELNVDMRVGVAIGSGIGGLEDIEFDLDALLLEGLRKRISPFLVPKMLPNLAAGNVAIVF 149 (412)
T ss_pred HHHHHHHHHHHHHHHHcCCCcccccCccEEEEEeccCCCcchhhhHHHHHHhcCCccCcCchhhhhhccchHHHHHHHHh
Confidence 46789999999999999997 33343 233444332110 01 2466788888
Q ss_pred cccCCCCeeEEeeCCcChHHHHHHHHHHHHHHhCCCCCCEEEEEEeeccc-------cc---------CCC---CC----
Q 012253 105 EKYGNTDIEGVDSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDSAV-------YA---------EGP---AR---- 161 (467)
Q Consensus 105 gl~G~~~~~~~di~~aC~gg~~AL~~A~~~l~a~~~~~~~aLVV~sD~~~-------y~---------~~~---~~---- 161 (467)
|+.|. .+-+..||+++..|+..|.++|+.|.. +.+|+.++|-.. |. +.+ .+
T Consensus 150 g~~G~----~~~~~tACatg~~AIg~A~~~I~~G~a--d~~iaGG~e~~i~~~~i~gF~am~Alst~nd~p~~asrPfd~ 223 (412)
T COG0304 150 GLKGP----NYTPVTACATGAHAIGDAVRLIRLGKA--DVVIAGGAEAAITPLGIAGFEAMRALSTRNDDPEKASRPFDK 223 (412)
T ss_pred CCCCC----cCChhhhHHhHHHHHHHHHHHHHcCCC--CEEEEcccccccCHHHHHHHHHHHHhccCCCCccccCCCCCC
Confidence 87543 445678999999999999999999976 899999997620 10 011 12
Q ss_pred ----CccccceeEEEecCCCC-c----eeeccccccccc-CcccccccCCCCCCceecCcchHHHHHHHHHHHHHHHHHH
Q 012253 162 ----PTGGAAAVAMLIGPDAP-I----AFESKLRGSHMS-HAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKYFCQK 231 (467)
Q Consensus 162 ----~t~GdGAvA~Ll~~~~~-~----~~~~~~~~~~~~-~~~df~~p~~~~~~~~vdG~~s~~~y~~a~~~~~~~~~~~ 231 (467)
...|.||+++||+.-.. . .+.-.+.|..+. +.++.-.|. | +|.-- .. +++..+
T Consensus 224 ~RdGfv~gEGag~lVLE~~ehA~aRGA~Iyaei~G~g~~~Da~h~t~P~-----p--~g~Ga----~~----am~~AL-- 286 (412)
T COG0304 224 NRDGFVIGEGAGALVLEELEHALARGAKIYAEIVGYGTTSDAYHITAPA-----P--DGEGA----IR----AMRAAL-- 286 (412)
T ss_pred CCCCEEEecceeEEEecChhhHHhCCCceEEEEEEEEecccccccCCCC-----C--CCchH----HH----HHHHHH--
Confidence 24599999999987541 0 111112232222 334444443 2 33221 12 222222
Q ss_pred HHhhhcCCCCccccceeccCCchHHHHHHHH
Q 012253 232 FEKLEGRQFSMLDVDYFVFHSPYNKLVQKSF 262 (467)
Q Consensus 232 ~~~~~~~~~~~~d~d~~i~H~p~~k~~~k~~ 262 (467)
..++++++||||+..|--.++.-++..
T Consensus 287 ----~~Agl~~~~idYinaHgTsT~~nD~~E 313 (412)
T COG0304 287 ----ADAGLTPEDIDYINAHGTSTPANDKAE 313 (412)
T ss_pred ----HHcCCCHhHCCEEeCCCccCCCccHHH
Confidence 345799999999999988776665543
|
|
| >COG0183 PaaJ Acetyl-CoA acetyltransferase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0013 Score=68.23 Aligned_cols=94 Identities=14% Similarity=0.145 Sum_probs=74.3
Q ss_pred CHHHHHHHHHHHHHHHc--CCCcCCcCEEEEEeccCCC-CCCcHHHHHHHHhcccCCCCeeEEeeCCcChHHHHHHHHHH
Q 012253 56 DVISMSLTVVTSLLEKY--KIDPTQIGRLEVGSETVID-KSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAALFNCV 132 (467)
Q Consensus 56 d~~~ma~~Aa~~aL~~a--gi~~~~Id~Li~~Tes~~~-~~ps~a~~v~~~Lgl~G~~~~~~~di~~aC~gg~~AL~~A~ 132 (467)
...++.....+..+++. ++++.+||-+++|+..+.. ....++..+....|+ +.++.++.+..+|.+|+.|+..|.
T Consensus 26 ~~e~l~~a~~~a~~~~~~~~vd~~~v~~~~~G~~~~~g~~~~~~ar~~a~~aGl--~~~~p~~~V~~~c~SG~~Av~~A~ 103 (392)
T COG0183 26 AAEALGAALIDAGLERAPADVDAADVDDVILGCVLQAGEQGQNIARQAALAAGL--PGSVPAVTVNRACASGLAAVRLAA 103 (392)
T ss_pred CHHHHHHHHHHHHhhhccccCCHHHhhhheeccccccccccccHHHHHHHHcCC--CCCCCceEEeccchhHHHHHHHHH
Confidence 34455555555555433 5777778888998766553 456788899999998 446899999999999999999999
Q ss_pred HHHHhCCCCCCEEEEEEeecc
Q 012253 133 NWVESASWDGRYGLVVCTDSA 153 (467)
Q Consensus 133 ~~l~a~~~~~~~aLVV~sD~~ 153 (467)
..|++|.. +.+|+++.|.+
T Consensus 104 ~~I~sG~~--dvvlagG~E~m 122 (392)
T COG0183 104 QAIASGEA--DVVLAGGVEKM 122 (392)
T ss_pred HHHHCCCC--CEEEEEeeeec
Confidence 99999966 99999999988
|
|
| >COG3321 Polyketide synthase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.017 Score=67.30 Aligned_cols=173 Identities=14% Similarity=0.138 Sum_probs=111.5
Q ss_pred HHHHHHHHHHHHcCCCcCCcC----EEEEEeccCCCCCCc-------------------HHHHHHHHhcccCCCCeeEEe
Q 012253 60 MSLTVVTSLLEKYKIDPTQIG----RLEVGSETVIDKSKS-------------------IKTFLMQIFEKYGNTDIEGVD 116 (467)
Q Consensus 60 ma~~Aa~~aL~~agi~~~~Id----~Li~~Tes~~~~~ps-------------------~a~~v~~~Lgl~G~~~~~~~d 116 (467)
|..+.+.++|+++|++|+.+. .|+.|..+.+|.... +++.|...|++.| .++.
T Consensus 94 llLe~aw~AlEdAG~~~~~l~g~~tgV~~g~~~~~y~~~~~~~~~~~~~~~~~g~~~~~~a~Risy~l~l~G----Ps~~ 169 (1061)
T COG3321 94 LLLEVAWEALEDAGIYPDSLRGSATGVFAGASVADYLLLLLADDEAEPEYAITGNSSSVAAGRISYVLGLSG----PSVT 169 (1061)
T ss_pred HHHHHHHHHHHHcCCCccccCCcceEEEEeeccCccccccccccccccceecccchhhHHHHHHHHHhcCCC----CCcc
Confidence 889999999999999999888 566676666554322 6778999999855 2567
Q ss_pred eCCcChHHHHHHHHHHHHHHhCCCCCCEEEEEEeecc-------cccCC-----CC----------CCccccceeEEEec
Q 012253 117 STNACYGGTAALFNCVNWVESASWDGRYGLVVCTDSA-------VYAEG-----PA----------RPTGGAAAVAMLIG 174 (467)
Q Consensus 117 i~~aC~gg~~AL~~A~~~l~a~~~~~~~aLVV~sD~~-------~y~~~-----~~----------~~t~GdGAvA~Ll~ 174 (467)
|..+|++.+.|+++|+..|++|.. ..||+-+..+. .|... .+ -...|.|+++++|.
T Consensus 170 vdtaCSSsLvAvhlA~~sL~~Ge~--d~alaGgv~l~~~p~~~~~~~~~g~ls~~g~c~~fd~~adG~v~geG~g~vvLK 247 (1061)
T COG3321 170 VDTACSSSLVAVHLACQSLRLGEC--DLALAGGVNLVLSPESSYLFSAGGMLSPDGRCKAFDADADGYVRGEGAGVVVLK 247 (1061)
T ss_pred ccchhhHHHHHHHHHHHHHHcCCC--CEEEecceEeccCCcceeeeecccCcCCCCcceecccCCCCEEEeeeEEEEEEE
Confidence 789999999999999999999965 77777766654 11111 11 12458999999998
Q ss_pred CCCC-c----eeecccccccccCc---ccccccCCCCCCceecCcchHHHHHHHHHHHHHHHHHHHHhhhcCCCCccccc
Q 012253 175 PDAP-I----AFESKLRGSHMSHA---YDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKYFCQKFEKLEGRQFSMLDVD 246 (467)
Q Consensus 175 ~~~~-~----~~~~~~~~~~~~~~---~df~~p~~~~~~~~vdG~~s~~~y~~a~~~~~~~~~~~~~~~~~~~~~~~d~d 246 (467)
+-.. . .+..-+.|+-..+. ..+..|+ .. ...+.+.+++ +.+++.+++|+
T Consensus 248 rl~~A~~dgd~IyavI~gsavn~dG~~~gltaP~-------~~------aQ~~v~~~al----------~~a~i~p~tv~ 304 (1061)
T COG3321 248 RLSDAERDGDRIYAVIRGSAVNQDGRSNGLTAPN-------LE------AQADVIREAL----------ADAGIDPATVQ 304 (1061)
T ss_pred EhHHHHhCCCeEEEEEEeeeeccCCCcCCCCCCC-------HH------HHHHHHHHHH----------HhcCCCcccCc
Confidence 7431 0 00001122221110 1222222 11 1222222222 44579999999
Q ss_pred eeccCCchHHHHHHH
Q 012253 247 YFVFHSPYNKLVQKS 261 (467)
Q Consensus 247 ~~i~H~p~~k~~~k~ 261 (467)
|+=-|...+.+.+-+
T Consensus 305 yvEaHgTGT~lGDpi 319 (1061)
T COG3321 305 YVEAHGTGTPLGDPI 319 (1061)
T ss_pred EEEecCCCCCCcCHH
Confidence 999999887765543
|
|
| >PF13723 Ketoacyl-synt_2: Beta-ketoacyl synthase, N-terminal domain | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.067 Score=50.86 Aligned_cols=116 Identities=16% Similarity=0.090 Sum_probs=80.6
Q ss_pred CHHHHHHHHHHHHHHHcCCCcCCcCEEEEEeccCCC---------------CCC-----cHHHHHHHHhcccCCCCeeEE
Q 012253 56 DVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVID---------------KSK-----SIKTFLMQIFEKYGNTDIEGV 115 (467)
Q Consensus 56 d~~~ma~~Aa~~aL~~agi~~~~Id~Li~~Tes~~~---------------~~p-----s~a~~v~~~Lgl~G~~~~~~~ 115 (467)
..+-|++.++..++.+. .++|.+||+|..|+- .+| |+-..+...+.+.-.......
T Consensus 33 ~~~rla~~~a~~~~~~~----~~~d~~VfaS~~Gel~~t~~ll~~l~~~~~lSPT~Fs~SVHNA~aG~~sI~~~~~~~~t 108 (218)
T PF13723_consen 33 RLSRLALEAALECLAED----EQPDAIVFASRHGELERTFKLLEALAEEEELSPTAFSQSVHNAAAGYWSIATKNTGPNT 108 (218)
T ss_pred HHHHHHHHHHHHHHhcc----CCCCcEEEEeCCCcHHHHHHHHHHHHhCCCcCccchhhhhhhHHHHHHHHHhCCCCceE
Confidence 58899999999998653 468899999977641 123 222233334443111334455
Q ss_pred eeCCcChHHHHHHHHHHHHHHhCCCCCCEEEEEEeecc---cccCCC-CCCccccceeEEEecCCCC
Q 012253 116 DSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDSA---VYAEGP-ARPTGGAAAVAMLIGPDAP 178 (467)
Q Consensus 116 di~~aC~gg~~AL~~A~~~l~a~~~~~~~aLVV~sD~~---~y~~~~-~~~t~GdGAvA~Ll~~~~~ 178 (467)
-+..+=.++..||.-|..++..| . +.||||+.|-. .|.... .+.....-|+|++|++...
T Consensus 109 al~a~~~sf~~aLleA~~~l~~~-~--~~VLlv~~De~~p~~y~~~~~~~~~~~~~A~al~L~~~~~ 172 (218)
T PF13723_consen 109 ALAAGEDSFEAALLEAAAQLAEG-A--EPVLLVCYDEPLPEPYQEFRPERDPPFPYALALVLSPGDS 172 (218)
T ss_pred EEecCcchHHHHHHHHHHHHHcC-C--CCEEEEEeCCCCChhhhhcccccCCCcCEEEEEEecCCCC
Confidence 56677789999999999999988 4 89999999987 454442 2344567789999998754
|
|
| >KOG1391 consensus Acetyl-CoA acetyltransferase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.0076 Score=57.55 Aligned_cols=96 Identities=11% Similarity=0.124 Sum_probs=76.0
Q ss_pred CCCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHhcc-cC-CCCeeEEeeCCcChHHHHHHHHH
Q 012253 54 VEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEK-YG-NTDIEGVDSTNACYGGTAALFNC 131 (467)
Q Consensus 54 ~Ed~~~ma~~Aa~~aL~~agi~~~~Id~Li~~Tes~~~~~ps~a~~v~~~Lgl-~G-~~~~~~~di~~aC~gg~~AL~~A 131 (467)
+-+..+|.+.|++.+|+.+++.++.+|.+|+|..- .+.+-.-||.+..|| .| +.+..++.++-=|.+|..++.++
T Consensus 25 g~~aTdL~~~AakAAL~aa~v~~e~VD~VI~GNV~---aSSsDgIYl~RHvGL~~GvP~e~pALtiNRLCGSGFQsiVNg 101 (396)
T KOG1391|consen 25 GLSATDLGVVAAKAALKAANVGAEAVDHVIMGNVL---ASSSDGIYLARHVGLRVGVPKETPALTINRLCGSGFQSIVNG 101 (396)
T ss_pred CcchhhHHHHHHHHHHhhcCCChhhcceEEEeeee---eccCCceEeeeccccccCCcCccCceeehhhhcccHHHHHhh
Confidence 45678999999999999999999999999987532 122345688888887 34 45778999999999999999999
Q ss_pred HHHHHhCCCCCCEEEEEEeeccc
Q 012253 132 VNWVESASWDGRYGLVVCTDSAV 154 (467)
Q Consensus 132 ~~~l~a~~~~~~~aLVV~sD~~~ 154 (467)
+.-|.-+.. +-+|--+.|.+.
T Consensus 102 aQ~I~vgea--~ivL~GGtEnMS 122 (396)
T KOG1391|consen 102 AQEICVGEA--EIVLCGGTENMS 122 (396)
T ss_pred HHHhhcCcc--eEEEecCccccc
Confidence 999998855 656655566653
|
|
| >KOG1394 consensus 3-oxoacyl-(acyl-carrier-protein) synthase (I and II) [Lipid transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.03 Score=56.05 Aligned_cols=228 Identities=18% Similarity=0.230 Sum_probs=131.9
Q ss_pred CceeEEeEEEEecCCceeehhHHhhhh----CCCc---CeeE----Eeccce-Eee----ccCCC----CCHHHHHHHHH
Q 012253 6 PKNVGILALDIYFPPTCVLQEALEVHD----GVSK---GKYT----VGLGQD-CMA----FCSEV----EDVISMSLTVV 65 (467)
Q Consensus 6 ~~~vgI~ai~~y~P~~~v~~~el~~~~----g~~~---~k~~----~Gig~r-~~a----v~~~~----Ed~~~ma~~Aa 65 (467)
...|-|.++|...|--.=...-|.... |+.. ..|. .-.|+- ++. |...+ -+...||+.|+
T Consensus 23 ~rRVVITGmG~VTplG~~v~~~w~~Ll~GesGI~~l~~~d~k~~p~~v~g~Ip~f~~e~~~s~~~~r~ms~~~~~al~aa 102 (440)
T KOG1394|consen 23 MRRVVITGMGAVTPLGNGVHTSWRNLLSGESGISSLEGPDYKSIPFTVAGKIPRFSVEDYVSKGDERRMSKFTKLALTAA 102 (440)
T ss_pred ceeEEEeccceeecCCCChHHHHHHhhccccCcccccccccccCcchheeeccccccccccchhhhhhhhHHHHHHHHHH
Confidence 367999999999987654444444332 2211 0110 000100 011 00111 13678999999
Q ss_pred HHHHHHcCCCcC---CcC----EEEEEeccCC---------------------CCCCc-----HHHHHHHHhcccCCCCe
Q 012253 66 TSLLEKYKIDPT---QIG----RLEVGSETVI---------------------DKSKS-----IKTFLMQIFEKYGNTDI 112 (467)
Q Consensus 66 ~~aL~~agi~~~---~Id----~Li~~Tes~~---------------------~~~ps-----~a~~v~~~Lgl~G~~~~ 112 (467)
.++|+++++.+. +.| .+.+||.-+. ++.|- .+.+|.-++|+-|+.+
T Consensus 103 ~eAL~da~~~~~~~~e~dk~~~GV~iGtgmg~l~~i~e~a~~~~~~g~rrvsPffVPkil~NM~ag~vsm~~gl~Gpnh- 181 (440)
T KOG1394|consen 103 EEALKDAGLLDVNLSEEDKEKTGVLIGTGMGDLEDIYETAQNLSEKGYRRVSPFFVPKILTNMAAGYVSMKYGLRGPNH- 181 (440)
T ss_pred HHHHHhcCCCCcccchhhhhhhceEeccccccHHHHHHHHHHHHHhcccccCccccchhhcccccchhhhhhcCcCCch-
Confidence 999999987665 222 3345554331 11221 3568888888855333
Q ss_pred eEEeeCCcChHHHHHHHHHHHHHHhCCCCCCEEEEEEeeccc-------c---------cCCC---CCC--------ccc
Q 012253 113 EGVDSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDSAV-------Y---------AEGP---ARP--------TGG 165 (467)
Q Consensus 113 ~~~di~~aC~gg~~AL~~A~~~l~a~~~~~~~aLVV~sD~~~-------y---------~~~~---~~~--------t~G 165 (467)
.++.||+.+..++-.|.++|+.|.+ +..|.=++|.+. | .+.+ .|| ..|
T Consensus 182 ---svSTACATg~h~igda~n~Ir~Gda--DvmlAGgsE~~I~PlslaGF~r~RALSt~nd~P~~aSRPfD~~RdGFVmG 256 (440)
T KOG1394|consen 182 ---SVSTACATGNHCIGDAFNFIRLGDA--DVMLAGGSEACINPLSLAGFSRARALSTRNDNPQKASRPFDKKRDGFVMG 256 (440)
T ss_pred ---hhHhhhhhccchHHHHHHHHHhCcc--ceeeccCcceeecchhhhhHHHHHHhhhcCCCccccCCCCccCCCceeec
Confidence 4578999999999999999999954 666666677651 0 1111 122 359
Q ss_pred cceeEEEecCC-------CCceeecccccc-cccCcccccccCCCCCCceecCcchHHHHHHHHHHHHHHHHHHHHhhhc
Q 012253 166 AAAVAMLIGPD-------APIAFESKLRGS-HMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKYFCQKFEKLEG 237 (467)
Q Consensus 166 dGAvA~Ll~~~-------~~~~~~~~~~~~-~~~~~~df~~p~~~~~~~~vdG~~s~~~y~~a~~~~~~~~~~~~~~~~~ 237 (467)
.||+.+|++.= +++.-+ +.|. .+.|.+....|. .||.-. ..+++.+. ..
T Consensus 257 EGagvlvlEelEHA~~RgA~I~AE--~lGygls~Da~HiT~P~-------~dG~Ga----~~am~raL----------~~ 313 (440)
T KOG1394|consen 257 EGAGVLVLEELEHAKKRGAPIYAE--VLGYGLSSDAYHITSPD-------PDGAGA----VLAMERAL----------KD 313 (440)
T ss_pred cceeEEehHhHHHHHHcCCceeHH--hhcCcccccccccCCCC-------CCcchH----HHHHHHHH----------HH
Confidence 99999988752 232111 2222 223444444553 355432 22333222 34
Q ss_pred CCCCccccceeccCCchHHHHHHHH
Q 012253 238 RQFSMLDVDYFVFHSPYNKLVQKSF 262 (467)
Q Consensus 238 ~~~~~~d~d~~i~H~p~~k~~~k~~ 262 (467)
+++.++||||+--|.-.+.+.+.+.
T Consensus 314 Agl~pe~i~YvNAHATST~~GD~aE 338 (440)
T KOG1394|consen 314 AGLSPEDIDYVNAHATSTPLGDAAE 338 (440)
T ss_pred cCCChhhcCeeecccccCcCchHHH
Confidence 5899999999999998887776553
|
|
| >KOG1390 consensus Acetyl-CoA acetyltransferase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.60 E-value=0.035 Score=54.78 Aligned_cols=96 Identities=8% Similarity=0.087 Sum_probs=73.3
Q ss_pred CCCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHhcccCCCCeeEEeeCCcChHHHHHHHHHHH
Q 012253 54 VEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAALFNCVN 133 (467)
Q Consensus 54 ~Ed~~~ma~~Aa~~aL~~agi~~~~Id~Li~~Tes~~~~~ps~a~~v~~~Lgl~G~~~~~~~di~~aC~gg~~AL~~A~~ 133 (467)
.-.+.+|+.-|.+.+|+++++++++++-+|+|..-.-..--..+-...---|| +..+.+..++--|++|+-|+.+|..
T Consensus 27 sl~A~~Lgsvaikaalera~v~~~~v~eVi~GnVl~AnlGQapaRQaalgAGl--p~sv~~tTvNkvCaSgmKAv~laaQ 104 (396)
T KOG1390|consen 27 SLTATELGSVAIKAALERAVVPPSDVAEVIFGNVLSANLGQAPARQAALGAGL--PYSVPATTVNKVCASGMKAVILAAQ 104 (396)
T ss_pred cCchhhHHHHHHHHHHHhcCCCHHHhhhhhhccccccccCcchHHHHHhhcCC--CcceeeEeehhhhhhhHHHHHHHHH
Confidence 35688999999999999999999999999998755433222223332222234 5578888888999999999999999
Q ss_pred HHHhCCCCCCEEEEEEeecc
Q 012253 134 WVESASWDGRYGLVVCTDSA 153 (467)
Q Consensus 134 ~l~a~~~~~~~aLVV~sD~~ 153 (467)
-|..|.. ..++..+.|.+
T Consensus 105 sI~~G~~--divVaGGmEsM 122 (396)
T KOG1390|consen 105 SIQTGHA--DIVVAGGMESM 122 (396)
T ss_pred HHhcCCc--cEEEecccchh
Confidence 9999954 67777777776
|
|
| >PRK06025 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=95.36 E-value=0.044 Score=57.19 Aligned_cols=84 Identities=13% Similarity=0.170 Sum_probs=52.3
Q ss_pred hcCCCCccccceeccCCchHHHHHHHHHhhhhhhhccccCchhhHHhhhcCCCCCCCcchhhhhhhHHHHHHHHHHHHhh
Q 012253 236 EGRQFSMLDVDYFVFHSPYNKLVQKSFARLFFNDFLRNASSVDEIAKEKLAPYSTLSDVESYQSRDLEKASQQVAKQLYD 315 (467)
Q Consensus 236 ~~~~~~~~d~d~~i~H~p~~k~~~k~~~~l~~~~~~~~~~~~~~~~~~~l~~~~g~~~e~~~~~~~~~k~~~~~~~~~~~ 315 (467)
+.++++++|||++-+|++|..+.....+.+ |++.++... +
T Consensus 326 ~~AGl~~~DID~~ei~eaFa~~~l~~~~~l------------------------g~~~~~vN~---------~------- 365 (417)
T PRK06025 326 AKAGLTKDDIDLWEINEAFAVVAEKFIRDL------------------------DLDRDKVNV---------N------- 365 (417)
T ss_pred HHcCCCHHHCcEEEEchHHHHHHHHHHHHc------------------------CCChhhccc---------c-------
Confidence 345799999999999999998877777666 444332110 0
Q ss_pred hhcCCCcccccccCccccchHHHHHHHHHhhcCcCCCCCEEEEEEeccccc
Q 012253 316 LKVQPSTLIPKQVGNMYTASLYAAFASLLHEKHSSLEGKRVIMFSYGSGLT 366 (467)
Q Consensus 316 ~~~~~s~~~~~~~GN~~taS~~l~L~~~l~~~~~~~~G~~ill~syGsG~~ 366 (467)
--.+.+..-+|+++...+...+..+.++ + .+.| .+.++ .|.|..
T Consensus 366 ---GG~ia~GHp~GaTGa~~v~~ll~qL~~~-g-~~~G-l~~~c-~~GG~g 409 (417)
T PRK06025 366 ---GGAIALGHPIGATGSILIGTVLDELERR-G-LKRG-LVTMC-AAGGMA 409 (417)
T ss_pred ---CCHHhcCCchhHHHHHHHHHHHHHHHHh-C-CCeE-EEEEE-eeccce
Confidence 0111234577888888888888887665 3 3445 33333 333443
|
|
| >KOG1392 consensus Acetyl-CoA acetyltransferase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.96 E-value=0.016 Score=56.14 Aligned_cols=89 Identities=16% Similarity=0.123 Sum_probs=70.5
Q ss_pred CHHHHHHHHHHHHHHHcCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHhcccCCCCeeEEeeCCcChHHHHHHHHHHHHH
Q 012253 56 DVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAALFNCVNWV 135 (467)
Q Consensus 56 d~~~ma~~Aa~~aL~~agi~~~~Id~Li~~Tes~~~~~ps~a~~v~~~Lgl~G~~~~~~~di~~aC~gg~~AL~~A~~~l 135 (467)
-+.+|+.+|...+|++..++.+.||.||+||.-.......++..-+-.-|. +..+.+-.+.-+|-+.-.|+.....+|
T Consensus 65 mphdlar~al~~ll~kt~lpke~~dyii~gtviqevktsniareaal~agf--sdktpahtvtmacissn~amttgmgli 142 (465)
T KOG1392|consen 65 MPHDLAREALKALLEKTKLPKEQLDYIICGTVIQEVKTSNIAREAALLAGF--SDKTPAHTVTMACISSNVAMTTGMGLI 142 (465)
T ss_pred chhHHHHHHHHHHHHhccCCHHHhceeeehhhHHHHhcchHHHHHHHhcCC--CCCCccceeeeehhccchhhhccceeE
Confidence 368999999999999999999999999999976665444455444444455 466778888899999999999999999
Q ss_pred HhCCCCCCEEEEEE
Q 012253 136 ESASWDGRYGLVVC 149 (467)
Q Consensus 136 ~a~~~~~~~aLVV~ 149 (467)
++|.+ .++|-+
T Consensus 143 atg~~---dvivag 153 (465)
T KOG1392|consen 143 ATGNA---DVIVAG 153 (465)
T ss_pred eeCCc---CEEEEc
Confidence 99965 455543
|
|
| >PRK07850 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=94.18 E-value=0.56 Score=48.69 Aligned_cols=126 Identities=16% Similarity=0.153 Sum_probs=69.4
Q ss_pred eeehhHHhhhhCCCcCeeEEeccceEeeccCCCCCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEeccCCCCCCcHHHHHH
Q 012253 22 CVLQEALEVHDGVSKGKYTVGLGQDCMAFCSEVEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLM 101 (467)
Q Consensus 22 ~v~~~el~~~~g~~~~k~~~Gig~r~~av~~~~Ed~~~ma~~Aa~~aL~~agi~~~~Id~Li~~Tes~~~~~ps~a~~v~ 101 (467)
.|..++.++..+.+|--...|.+... ..+ .....-...|++++|+++|++|+|||.+.+- + ..+...-...
T Consensus 252 vl~see~A~~l~~~p~~~i~g~~~~~---~~~-~~~~~~~~~a~~~al~~agl~~~did~~ei~----d-~F~~~~l~~~ 322 (387)
T PRK07850 252 LWMDEDRARALGLRPRARIVAQALVG---AEP-YYHLDGPVQATAKVLEKAGMKIGDIDLVEIN----E-AFASVVLSWA 322 (387)
T ss_pred EEecHHHHHHcCCCCcEEEEEEEEec---cCc-hhhcchHHHHHHHHHHHcCCCHHHcCeeeec----c-cchHHHHHHH
Confidence 35566777777765533323544221 111 1223445689999999999999999999983 2 2233333444
Q ss_pred HHhcccCCCCeeEEeeCC---------cChHHHHHHHHHHHHHHhCCCCCCEEEEEEeecccccCCCCCCccccceeEEE
Q 012253 102 QIFEKYGNTDIEGVDSTN---------ACYGGTAALFNCVNWVESASWDGRYGLVVCTDSAVYAEGPARPTGGAAAVAML 172 (467)
Q Consensus 102 ~~Lgl~G~~~~~~~di~~---------aC~gg~~AL~~A~~~l~a~~~~~~~aLVV~sD~~~y~~~~~~~t~GdGAvA~L 172 (467)
+.||+ .. .-+.+.. +|. |+..+..+...|+.. ++++.|+..+- .|..+.|||
T Consensus 323 e~lg~--~~--~pvN~~GG~la~Ghp~gat-G~~~v~e~~~qL~~~--~~~~g~~~~c~------------~gg~g~a~~ 383 (387)
T PRK07850 323 QVHEP--DM--DKVNVNGGAIALGHPVGST-GARLITTALHELERT--DKSTALITMCA------------GGALSTGTI 383 (387)
T ss_pred HHcCC--CC--CCcCCCCchhhcCCCcchh-HHHHHHHHHHHHHhc--CCCeEEEEEcc------------ccCceeEEE
Confidence 67665 11 1222222 333 333344444445544 45777765432 455667777
Q ss_pred ecC
Q 012253 173 IGP 175 (467)
Q Consensus 173 l~~ 175 (467)
|+.
T Consensus 384 ~e~ 386 (387)
T PRK07850 384 IER 386 (387)
T ss_pred EEe
Confidence 764
|
|
| >PRK13359 beta-ketoadipyl CoA thiolase; Provisional | Back alignment and domain information |
|---|
Probab=93.47 E-value=0.7 Score=48.18 Aligned_cols=127 Identities=15% Similarity=0.160 Sum_probs=69.5
Q ss_pred eeehhHHhhhhCCCc-CeeEEeccceEeeccCCCCCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEeccCCCCCCcHHHHH
Q 012253 22 CVLQEALEVHDGVSK-GKYTVGLGQDCMAFCSEVEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFL 100 (467)
Q Consensus 22 ~v~~~el~~~~g~~~-~k~~~Gig~r~~av~~~~Ed~~~ma~~Aa~~aL~~agi~~~~Id~Li~~Tes~~~~~ps~a~~v 100 (467)
.|..++.++.+|..+ .++ .|.+... . ++.... .-...|++++|+++|+.|+|||.+.+ . |......-..
T Consensus 263 vL~s~e~A~~~g~~~~a~I-~g~~~~~--~-~p~~~~-~~~~~A~~~al~~AGl~~~DID~iei----~-dafa~~~l~~ 332 (400)
T PRK13359 263 LLASEAAARRHGLKPRARV-LGIATAG--V-EPRVMG-IGPAPATQKLLARLGMTLDQFDVIEL----N-EAFASQGLAV 332 (400)
T ss_pred EEecHHHHHHCCCCccEEE-EEEEEec--C-CCCccc-hhHHHHHHHHHHHhCCCHHHcCcCcc----C-cHhHHHHHHH
Confidence 355566666667655 344 3555442 1 222222 23368999999999999999999983 2 2233344455
Q ss_pred HHHhcccCCCCeeEEeeCCc---------ChHHHHHHHHHHHHHHhCCCCCCEEEEEEeecccccCCCCCCccccceeEE
Q 012253 101 MQIFEKYGNTDIEGVDSTNA---------CYGGTAALFNCVNWVESASWDGRYGLVVCTDSAVYAEGPARPTGGAAAVAM 171 (467)
Q Consensus 101 ~~~Lgl~G~~~~~~~di~~a---------C~gg~~AL~~A~~~l~a~~~~~~~aLVV~sD~~~y~~~~~~~t~GdGAvA~ 171 (467)
.+.||+. .....+..+.+ ++|....+. +...|+.. ++++.|+..+- .|..+.||
T Consensus 333 ~e~lg~~--~~~~pvN~~GG~la~GHp~gasG~~~v~e-~~~qL~~~--~~~~g~~~~c~------------~gG~g~a~ 395 (400)
T PRK13359 333 LRELGLA--DDDARVNPNGGAIALGHPLGASGARLVTT-ALYQLERT--GGRFALCTMCI------------GVGQGIAI 395 (400)
T ss_pred HHHcCCC--CCCCCEECCCchhhcCCchhHHHHHHHHH-HHHHHhhc--CCCeEEEEEcc------------cCCceeEE
Confidence 6778762 11123333333 333333333 33334433 45777765443 45556777
Q ss_pred EecC
Q 012253 172 LIGP 175 (467)
Q Consensus 172 Ll~~ 175 (467)
||++
T Consensus 396 ~ie~ 399 (400)
T PRK13359 396 AIER 399 (400)
T ss_pred EEEe
Confidence 7764
|
|
| >PF08541 ACP_syn_III_C: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal ; InterPro: IPR013747 This domain is found on 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III 2 | Back alignment and domain information |
|---|
Probab=93.46 E-value=0.14 Score=41.16 Aligned_cols=73 Identities=18% Similarity=0.100 Sum_probs=42.9
Q ss_pred HHHcCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHhcccCCCCeeEEeeC---C-cChHHHHHHHHHHHHHHhCC-CCCC
Q 012253 69 LEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDST---N-ACYGGTAALFNCVNWVESAS-WDGR 143 (467)
Q Consensus 69 L~~agi~~~~Id~Li~~Tes~~~~~ps~a~~v~~~Lgl~G~~~~~~~di~---~-aC~gg~~AL~~A~~~l~a~~-~~~~ 143 (467)
|+++|++++|||.+++.. .++.....+.+.+|+ +++....++. | +|+.-..+|.. .++.+. .||+
T Consensus 1 L~~~g~~~~did~~i~hq-----~~~~~~~~~~~~lgi--~~~~~~~~~~~~Gn~~sa~~~~~L~~---~~~~g~~~~Gd 70 (90)
T PF08541_consen 1 LERAGLSPDDIDHFIPHQ-----ASKKILDSIAKRLGI--PPERFPDNLAEYGNTGSASIPINLAD---ALEEGRIKPGD 70 (90)
T ss_dssp HHHTT--GGGESEEEE-S-----SSHHHHHHHHHHHTS---GGGBE-THHHH-B-GGGHHHHHHHH---HHHTTSSCTTE
T ss_pred CccccCCHHHCCEEEeCC-----CCHHHHHHHHHHcCC--cHHHHHHHHhccCcchhhhHHHHHHH---HHHcCCCCCCC
Confidence 789999999999999854 234455568889998 4432222332 2 44444444444 444432 2678
Q ss_pred EEEEEEee
Q 012253 144 YGLVVCTD 151 (467)
Q Consensus 144 ~aLVV~sD 151 (467)
++|+++.-
T Consensus 71 ~vl~~~~G 78 (90)
T PF08541_consen 71 RVLLVGFG 78 (90)
T ss_dssp EEEEEEEE
T ss_pred EEEEEEEE
Confidence 99988753
|
3.1.41 from EC, the enzyme responsible for initiating the chain of reactions of the fatty acid synthase in plants and bacteria. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0008610 lipid biosynthetic process; PDB: 3IL3_A 1ZOW_C 3GWE_B 3GWA_B 1UB7_B 3LED_B 2EBD_A 1HNJ_A 2EFT_B 1HN9_B .... |
| >TIGR02430 pcaF beta-ketoadipyl CoA thiolase | Back alignment and domain information |
|---|
Probab=93.05 E-value=0.65 Score=48.43 Aligned_cols=75 Identities=9% Similarity=0.087 Sum_probs=46.4
Q ss_pred eeehhHHhhhhCCCc-CeeEEeccceEeeccCCCCCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEeccCCCCCCcHHHHH
Q 012253 22 CVLQEALEVHDGVSK-GKYTVGLGQDCMAFCSEVEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFL 100 (467)
Q Consensus 22 ~v~~~el~~~~g~~~-~k~~~Gig~r~~av~~~~Ed~~~ma~~Aa~~aL~~agi~~~~Id~Li~~Tes~~~~~ps~a~~v 100 (467)
.|..++.++.+|..+ .++ .|.+.... .+..... -...|++++|+++|++|+|||.+.+. |..+...-..
T Consensus 263 vl~s~e~A~~~g~~~~~~I-~g~~~~~~---~~~~~~~-~~~~a~~~al~~Agl~~~DID~~ei~-----D~f~~~~l~~ 332 (400)
T TIGR02430 263 LLASEEAVQRHGLTPRARI-LAAATAGV---EPRIMGI-GPVPATQKLLARAGLSIDQFDVIELN-----EAFAAQALAV 332 (400)
T ss_pred EEecHHHHHHCCCCccEEE-EEEEEecC---CCccccc-hHHHHHHHHHHHhCCCHHHCCCcccC-----cHHHHHHHHH
Confidence 455666666667544 344 35554431 2222222 23588999999999999999999831 2233444556
Q ss_pred HHHhcc
Q 012253 101 MQIFEK 106 (467)
Q Consensus 101 ~~~Lgl 106 (467)
.+.||+
T Consensus 333 ~e~lG~ 338 (400)
T TIGR02430 333 LRELGL 338 (400)
T ss_pred HHHcCC
Confidence 678887
|
Members of this family are designated beta-ketoadipyl CoA thiolase, an enzyme that acts at the end of pathways for the degradation of protocatechuate (from benzoate and related compounds) and of phenylacetic acid. |
| >PRK06205 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=92.82 E-value=0.66 Score=48.42 Aligned_cols=76 Identities=9% Similarity=-0.009 Sum_probs=47.1
Q ss_pred eeehhHHhhhhCCCcCeeEEeccceEeeccCCCCCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEeccCCCCCCcHHHHHH
Q 012253 22 CVLQEALEVHDGVSKGKYTVGLGQDCMAFCSEVEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLM 101 (467)
Q Consensus 22 ~v~~~el~~~~g~~~~k~~~Gig~r~~av~~~~Ed~~~ma~~Aa~~aL~~agi~~~~Id~Li~~Tes~~~~~ps~a~~v~ 101 (467)
.|..++.++..+..|-.+..|.+.... .+.... .-...|++++|+++|++|+|||.+.+. |......-...
T Consensus 265 vl~se~~A~~~~~~p~~~i~g~~~~~~---~~~~~~-~~~~~a~~~al~~Agl~~~Did~~ei~-----d~f~~~~l~~~ 335 (404)
T PRK06205 265 LVTTEDKAEELGLRPLARLVSWAVAGV---EPSRMG-IGPVPATEKALARAGLTLDDIDLIELN-----EAFAAQVLAVL 335 (404)
T ss_pred EEecHHHHHHCCCCceEEEEEEEEecc---CCcccc-ccHHHHHHHHHHHcCCCHHHCCEeeec-----cHHHHHHHHHH
Confidence 456667777777666444446664431 111111 233689999999999999999999952 22223344456
Q ss_pred HHhcc
Q 012253 102 QIFEK 106 (467)
Q Consensus 102 ~~Lgl 106 (467)
+.||+
T Consensus 336 e~lg~ 340 (404)
T PRK06205 336 KEWGF 340 (404)
T ss_pred HHhCc
Confidence 67776
|
|
| >cd00751 thiolase Thiolase are ubiquitous enzymes that catalyze the reversible thiolytic cleavage of 3-ketoacyl-CoA into acyl-CoA and acetyl-CoA, a 2-step reaction involving a covalent intermediate formed with a catalytic cysteine | Back alignment and domain information |
|---|
Probab=92.66 E-value=0.86 Score=47.21 Aligned_cols=96 Identities=16% Similarity=0.242 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHcCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHhcccC-CCCeeEEee--CC-cChHHHHHHHHHHHHH
Q 012253 60 MSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYG-NTDIEGVDS--TN-ACYGGTAALFNCVNWV 135 (467)
Q Consensus 60 ma~~Aa~~aL~~agi~~~~Id~Li~~Tes~~~~~ps~a~~v~~~Lgl~G-~~~~~~~di--~~-aC~gg~~AL~~A~~~l 135 (467)
-...|++++++++|++|+|||.+... +..........+.||+.+ +-++.+--+ .+ ..++|+..+..+...|
T Consensus 286 ~~~~a~~~a~~~Agi~~~did~~e~~-----d~f~~~~~~~~e~lg~~~~pvn~~GG~l~~Gh~~gasG~~~~~e~~~qL 360 (386)
T cd00751 286 GPVPAIPKALKRAGLTLDDIDLIEIN-----EAFAAQALACLKELGLDPEKVNVNGGAIALGHPLGASGARIVVTLLHEL 360 (386)
T ss_pred hHHHHHHHHHHHcCCCHHHcCEEEee-----chhHHHHHHHHHHhCCChhhcCCCcchHhhCccHHHHHHHHHHHHHHHH
Confidence 34689999999999999999999863 222223344456777521 111111111 11 1112333333444445
Q ss_pred HhCCCCCCEEEEEEeecccccCCCCCCccccceeEEEec
Q 012253 136 ESASWDGRYGLVVCTDSAVYAEGPARPTGGAAAVAMLIG 174 (467)
Q Consensus 136 ~a~~~~~~~aLVV~sD~~~y~~~~~~~t~GdGAvA~Ll~ 174 (467)
+.. .++++|+-.+- .|..+.+|||+
T Consensus 361 ~g~--~~~~gl~~~~~------------~gg~g~~~~ie 385 (386)
T cd00751 361 KRR--GGRYGLATMCI------------GGGQGAAMVIE 385 (386)
T ss_pred Hhc--CCCEEEEEEcc------------cccceEEEEEE
Confidence 433 44777776543 34555677765
|
They are found in prokaryotes and eukaryotes (cytosol, microbodies and mitochondria). There are 2 functional different classes: thiolase-I (3-ketoacyl-CoA thiolase) and thiolase-II (acetoacetyl-CoA thiolase). Thiolase-I can cleave longer fatty acid molecules and plays an important role in the beta-oxidative degradation of fatty acids. Thiolase-II has a high substrate specificity. Although it can cleave acetoacyl-CoA, its main function is the synthesis of acetoacyl-CoA from two molecules of acetyl-CoA, which gives it importance in several biosynthetic pathways. |
| >KOG1202 consensus Animal-type fatty acid synthase and related proteins [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.54 E-value=0.86 Score=52.43 Aligned_cols=178 Identities=17% Similarity=0.235 Sum_probs=103.2
Q ss_pred HHHHHHHHHHHHHHHcCCCcCCcCE----EEEE---eccCCC--CCCc------HHHHHHHHhcccCCCCeeEEee----
Q 012253 57 VISMSLTVVTSLLEKYKIDPTQIGR----LEVG---SETVID--KSKS------IKTFLMQIFEKYGNTDIEGVDS---- 117 (467)
Q Consensus 57 ~~~ma~~Aa~~aL~~agi~~~~Id~----Li~~---Tes~~~--~~ps------~a~~v~~~Lgl~G~~~~~~~di---- 117 (467)
-.-|-.+|..+++-++||+|.++.. +.++ +||... ..|. +...+-..|- |+=...||+
T Consensus 87 q~RlLLE~t~EAivDaGiNP~~LRGs~tGv~vg~s~seTs~~~~~dp~t~~Gy~mtgc~raMfa---NRiSytFDfqGPS 163 (2376)
T KOG1202|consen 87 QLRLLLEATWEAIVDAGINPDDLRGSRTGVFVGVSGSETSGALSQDPDTVNGYSMTGCVRAMFA---NRISYTFDFQGPS 163 (2376)
T ss_pred HHHHHHHHHHHHHHhCCCChhhcCcccceeEEeecCccccccccCCCccccceeecccHHHHhh---cceeEEEeccCCc
Confidence 4789999999999999999987652 2221 223211 1111 1111222221 222335554
Q ss_pred ---CCcChHHHHHHHHHHHHHHhCCCCCCEEEEEEeeccc-------c---c----CCC----CC----CccccceeEEE
Q 012253 118 ---TNACYGGTAALFNCVNWVESASWDGRYGLVVCTDSAV-------Y---A----EGP----AR----PTGGAAAVAML 172 (467)
Q Consensus 118 ---~~aC~gg~~AL~~A~~~l~a~~~~~~~aLVV~sD~~~-------y---~----~~~----~~----~t~GdGAvA~L 172 (467)
..+|.+.+.||+.|.+-+++|+. ..|||-+..... | . +++ ++ .--.||.+|+|
T Consensus 164 ~s~DtacsSsl~al~~a~~~~r~gqc--d~AiVaG~~liLkPt~slQFlRLgmls~dGsCkaFDeagnGY~Rseg~~avl 241 (2376)
T KOG1202|consen 164 FSVDTACSSSLMALQNAFQDIRSGQC--DAAIVAGANLILKPTTSLQFLRLGMLSPDGSCKAFDEAGNGYCRSEGVVAVL 241 (2376)
T ss_pred hhhhhhhHHHHHHHHHHHHhhhccCC--chhhhcccceEeccchhhHHHHhcCcCCCCcccchhccCCceeecCceEEEE
Confidence 45999999999999999999977 788888877641 1 1 111 01 11278999999
Q ss_pred ecCCCCceeecccccc--cccCcccccccCCCCCCceecCcchHHHHHHHHHHHHHHHHHHHHhhhcCCCCccccceecc
Q 012253 173 IGPDAPIAFESKLRGS--HMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKYFCQKFEKLEGRQFSMLDVDYFVF 250 (467)
Q Consensus 173 l~~~~~~~~~~~~~~~--~~~~~~df~~p~~~~~~~~vdG~~s~~~y~~a~~~~~~~~~~~~~~~~~~~~~~~d~d~~i~ 250 (467)
|.+...- .++.++ +...-.|-++-- |-.|| +|+.. .+.+++.| .++|+.++++-|+=-
T Consensus 242 lqrk~~A---rRvYAtilnartNTDGfKEq-GvTfP--~G~~Q----~qLi~e~Y----------se~Gl~P~sv~YvEA 301 (2376)
T KOG1202|consen 242 LQRKSLA---RRVYATILNARTNTDGFKEQ-GVTFP--SGDMQ----EQLIRETY----------SEAGLNPESVVYVEA 301 (2376)
T ss_pred EehhHHH---HHHHHHhhccccCCCchhhc-CccCC--CcHHH----HHHHHHHH----------HhcCCCcccEEEEEe
Confidence 9886421 011111 111113334432 44455 45432 12233333 345899999999999
Q ss_pred CCchHHHHH
Q 012253 251 HSPYNKLVQ 259 (467)
Q Consensus 251 H~p~~k~~~ 259 (467)
|--.+|..+
T Consensus 302 HGtGTkVGD 310 (2376)
T KOG1202|consen 302 HGTGTKVGD 310 (2376)
T ss_pred ccCCCCCCC
Confidence 988877543
|
|
| >KOG1389 consensus 3-oxoacyl CoA thiolase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.50 E-value=0.29 Score=48.32 Aligned_cols=95 Identities=17% Similarity=0.284 Sum_probs=76.0
Q ss_pred CCCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHhcccC-CCCeeEEeeCCcChHHHHHHHHHH
Q 012253 54 VEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYG-NTDIEGVDSTNACYGGTAALFNCV 132 (467)
Q Consensus 54 ~Ed~~~ma~~Aa~~aL~~agi~~~~Id~Li~~Tes~~~~~ps~a~~v~~~Lgl~G-~~~~~~~di~~aC~gg~~AL~~A~ 132 (467)
+..+-+|...+.+.++++.+++|+.|+-|++||.-.+... .+.+.++..+- | +..+...-++--|.+|+.|+...+
T Consensus 58 dt~pDeLl~~vl~a~ie~t~~dp~~igdi~vG~vL~pg~g-a~e~R~a~~~a--g~P~tvpv~tvNRqCsSGLqaVadiA 134 (435)
T KOG1389|consen 58 DTRPDELLAAVLRAVIEKTNLDPSLIGDIVVGTVLAPGSG-ASECRMAAFYA--GFPETVPVRTVNRQCSSGLQAVADIA 134 (435)
T ss_pred cCChHHHHHHHHHHHHhhcCCCHHHhcceeeeeccCCCcc-hHHHHHHHHHc--CCCcccchhhhhhhhhhHHHHHHHHH
Confidence 3456688889999999999999999999999998776533 66777777662 3 344555566679999999999999
Q ss_pred HHHHhCCCCCCEEEEEEeecc
Q 012253 133 NWVESASWDGRYGLVVCTDSA 153 (467)
Q Consensus 133 ~~l~a~~~~~~~aLVV~sD~~ 153 (467)
.-|++|.+ .-.|-.+.|.+
T Consensus 135 ~~Ir~G~y--dIGla~GvESM 153 (435)
T KOG1389|consen 135 AKIRAGFY--DIGLAAGVESM 153 (435)
T ss_pred HHHhcCce--eeecccchhhh
Confidence 99999987 67777777776
|
|
| >PRK08242 acetyl-CoA acetyltransferase; Validated | Back alignment and domain information |
|---|
Probab=92.38 E-value=0.97 Score=47.17 Aligned_cols=129 Identities=15% Similarity=0.122 Sum_probs=71.3
Q ss_pred eeehhHHhhhhCCCc-CeeEEeccceEeeccCCCCCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEeccCCCCCCcHHHHH
Q 012253 22 CVLQEALEVHDGVSK-GKYTVGLGQDCMAFCSEVEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFL 100 (467)
Q Consensus 22 ~v~~~el~~~~g~~~-~k~~~Gig~r~~av~~~~Ed~~~ma~~Aa~~aL~~agi~~~~Id~Li~~Tes~~~~~ps~a~~v 100 (467)
.|..++.++.+|..+ .++ .|.+... . .+.... .-...|++++|+++|++++|||.+.+. +......-..
T Consensus 267 vl~s~e~A~~~g~~p~a~I-~g~~~~~--~-~~~~~~-~~~~~a~~~al~~AGl~~~DID~~ei~-----daFa~~~l~~ 336 (402)
T PRK08242 267 LIGSEEAGKALGLKPRARI-VATATIG--S-DPTIML-TGPVPATRKALAKAGLTVDDIDLFELN-----EAFASVVLRF 336 (402)
T ss_pred EEecHHHHHHcCCCCcEEE-EEEEEec--C-Cchhhc-ccHHHHHHHHHHHcCCCHHHCCEEEec-----chhhHHHHHH
Confidence 466778888888755 444 3544332 1 122111 112569999999999999999999962 3333444556
Q ss_pred HHHhcccCC-CCeeE--EeeC--CcChHHHHHHHHHHHHHHhCCCCCCEEEEEEeecccccCCCCCCccccceeEEEecC
Q 012253 101 MQIFEKYGN-TDIEG--VDST--NACYGGTAALFNCVNWVESASWDGRYGLVVCTDSAVYAEGPARPTGGAAAVAMLIGP 175 (467)
Q Consensus 101 ~~~Lgl~G~-~~~~~--~di~--~aC~gg~~AL~~A~~~l~a~~~~~~~aLVV~sD~~~y~~~~~~~t~GdGAvA~Ll~~ 175 (467)
.+.||+... -++.+ .-++ .+++|....+.++..+ +.. ++++.|+-.+- .|..++||||++
T Consensus 337 ~e~lG~~~~~vN~~GG~la~GHP~GAsG~~~~~~l~~~L-~~~--~~~~g~~~~c~------------ggG~g~a~~~e~ 401 (402)
T PRK08242 337 MQALDIPHDKVNVNGGAIAMGHPLGATGAMILGTVLDEL-ERR--GKRTALITLCV------------GGGMGIATIIER 401 (402)
T ss_pred HHHhCCCCcCCCcCCCHHhcCCcHHHHHHHHHHHHHHHH-Hhc--CCCeEEEEEcc------------cCCceeEEEEEe
Confidence 788886210 01111 1111 1444444444444443 333 34677665432 566668888764
|
|
| >PRK06366 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=92.13 E-value=0.87 Score=47.28 Aligned_cols=115 Identities=11% Similarity=0.068 Sum_probs=67.4
Q ss_pred eeehhHHhhhhCCCcC-eeEEeccceEeeccCCCCCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEeccCCCCCCcHHHHH
Q 012253 22 CVLQEALEVHDGVSKG-KYTVGLGQDCMAFCSEVEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFL 100 (467)
Q Consensus 22 ~v~~~el~~~~g~~~~-k~~~Gig~r~~av~~~~Ed~~~ma~~Aa~~aL~~agi~~~~Id~Li~~Tes~~~~~ps~a~~v 100 (467)
.|..+|.++..+..|- ++ .|.++... + .++.......|++++++++|++|+|||.+.+- + ......-.-
T Consensus 252 vl~See~A~~l~~~pv~~I-~g~~~~~~---~-~~~~~~~~~~A~~~al~~Agl~~~DiDv~Ei~----d-aFa~~~l~~ 321 (388)
T PRK06366 252 VMASEKAINEYGLKPIARI-TGYESASL---D-PLDFVEAPIPATRKLLEKQNKSIDYYDLVEHN----E-AFSIASIIV 321 (388)
T ss_pred EEecHHHHHHcCCCcCEEE-EEEEEEec---C-HHHhcccHHHHHHHHHHHcCCCHHHcceeecc----c-hhHHHHHHH
Confidence 4566677776676665 54 35555431 1 12333335789999999999999999999873 2 233445566
Q ss_pred HHHhcccCCC-Cee--EEeeCC--cChHHHHHHHHHHHHHHhCCCCCCEEEEEE
Q 012253 101 MQIFEKYGNT-DIE--GVDSTN--ACYGGTAALFNCVNWVESASWDGRYGLVVC 149 (467)
Q Consensus 101 ~~~Lgl~G~~-~~~--~~di~~--aC~gg~~AL~~A~~~l~a~~~~~~~aLVV~ 149 (467)
.+.||+-|.+ |.. .+-.++ +|.|....+.++..+-.. .+++.|+-.
T Consensus 322 le~lgl~g~~vN~~GG~la~GHP~GatG~~~~~~l~~qL~~~---~~~~g~~~~ 372 (388)
T PRK06366 322 RDQLKIDNERFNVNGGAVAIGHPIGNSGSRIIVTLINALKTR---HMKTGLATL 372 (388)
T ss_pred HHHhCCCCCccCCCCchhhhCCCcCCCHHHHHHHHHHHHHhc---CCCeEEEEE
Confidence 6777762210 111 122233 666666666666655443 346766553
|
|
| >PRK09051 beta-ketothiolase; Provisional | Back alignment and domain information |
|---|
Probab=91.67 E-value=1.4 Score=45.88 Aligned_cols=75 Identities=8% Similarity=0.054 Sum_probs=47.3
Q ss_pred eeehhHHhhhhCCCcC-eeEEeccceEeeccCCCCCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEeccCCCCCCcHHHHH
Q 012253 22 CVLQEALEVHDGVSKG-KYTVGLGQDCMAFCSEVEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFL 100 (467)
Q Consensus 22 ~v~~~el~~~~g~~~~-k~~~Gig~r~~av~~~~Ed~~~ma~~Aa~~aL~~agi~~~~Id~Li~~Tes~~~~~ps~a~~v 100 (467)
.|..++.++.+|.+|- ++ .|.+.... .+..+. .-...|++++|+++|++|+|||.+.+. +......-..
T Consensus 259 vl~s~~~a~~~g~~~~~~I-~g~~~~~~---~~~~~~-~~~~~a~~~al~~agi~~~did~~ei~-----d~f~~~~~~~ 328 (394)
T PRK09051 259 VLAEADAAEARGLKPLARL-VGYAHAGV---DPEYMG-IGPVPATQKALERAGLTVADLDVIEAN-----EAFAAQACAV 328 (394)
T ss_pred EEecHHHHHHCCCCccEEE-EEEEEecc---CCCccc-ccHHHHHHHHHHHcCCCHHHcCEEEec-----CccHHHHHHH
Confidence 3555666666676653 44 35554431 222222 233689999999999999999999972 2233445556
Q ss_pred HHHhcc
Q 012253 101 MQIFEK 106 (467)
Q Consensus 101 ~~~Lgl 106 (467)
.+.||+
T Consensus 329 ~e~lg~ 334 (394)
T PRK09051 329 TRELGL 334 (394)
T ss_pred HHHhCC
Confidence 678886
|
|
| >PRK09050 beta-ketoadipyl CoA thiolase; Validated | Back alignment and domain information |
|---|
Probab=91.64 E-value=1.5 Score=45.79 Aligned_cols=74 Identities=12% Similarity=0.134 Sum_probs=44.5
Q ss_pred eehhHHhhhhCCCcC-eeEEeccceEeeccCCCCCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEeccCCCCCCcHHHHHH
Q 012253 23 VLQEALEVHDGVSKG-KYTVGLGQDCMAFCSEVEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLM 101 (467)
Q Consensus 23 v~~~el~~~~g~~~~-k~~~Gig~r~~av~~~~Ed~~~ma~~Aa~~aL~~agi~~~~Id~Li~~Tes~~~~~ps~a~~v~ 101 (467)
|..++.++..|..|- ++ .|.+.... .+..... -...|++++|+++|++|+|||.+.+ . |......-...
T Consensus 265 l~s~~~A~~lg~~p~a~I-~g~~~~~~---~~~~~~~-~~~~a~~~al~~Agl~~~DId~~ei----~-D~f~~~~l~~~ 334 (401)
T PRK09050 265 LASEAAAKKHGLTPRARI-LGMATAGV---EPRIMGI-GPAPATRKLLARLGLTIDQFDVIEL----N-EAFAAQGLAVL 334 (401)
T ss_pred EecHHHHHHCCCCccEEE-EEEEEecc---CCccccc-hHHHHHHHHHHHcCCCHHHCCcccc----C-cHhHHHHHHHH
Confidence 455566665665443 33 35554321 2222222 2357999999999999999999984 2 22333344556
Q ss_pred HHhcc
Q 012253 102 QIFEK 106 (467)
Q Consensus 102 ~~Lgl 106 (467)
+.||+
T Consensus 335 e~lg~ 339 (401)
T PRK09050 335 RQLGL 339 (401)
T ss_pred HHcCC
Confidence 77886
|
|
| >PRK06147 3-oxoacyl-(acyl carrier protein) synthase; Validated | Back alignment and domain information |
|---|
Probab=91.16 E-value=0.68 Score=47.28 Aligned_cols=90 Identities=11% Similarity=-0.052 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHcCCCcCCcCEEE-EEeccCCCCCCcHHHHHHHHhcccCCCCeeEEeeC---CcChH--HHHHHHHHHHH
Q 012253 61 SLTVVTSLLEKYKIDPTQIGRLE-VGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDST---NACYG--GTAALFNCVNW 134 (467)
Q Consensus 61 a~~Aa~~aL~~agi~~~~Id~Li-~~Tes~~~~~ps~a~~v~~~Lgl~G~~~~~~~di~---~aC~g--g~~AL~~A~~~ 134 (467)
..+|.+++|++++++|++||.|+ .+|.+... ...-+..+.+.|+.. .......-.+ .-|.+ |...+..+...
T Consensus 236 l~~ai~~AL~~agl~~~dId~v~ah~~gt~~~-d~~e~~A~~~~f~~~-~~~~~~~~~k~~~Gh~~aAaG~~~~~~a~~~ 313 (348)
T PRK06147 236 LTQAIRAALAEAGCGLEDMDYRIADLNGEQYR-FKEAALAEMRLFRVR-KEFFDLWHPAECIGEIGAAIGPALLGVALAA 313 (348)
T ss_pred HHHHHHHHHHHcCCCHHHCCEEEcCCCCCccc-hHHHHHHHHHHhhhc-cCCCceecchHhhcchHHHHHHHHHHHHHHH
Confidence 45889999999999999999988 45544432 334455566676631 1112222222 23443 44444445556
Q ss_pred HHhCCCCCCEEEEEEeec
Q 012253 135 VESASWDGRYGLVVCTDS 152 (467)
Q Consensus 135 l~a~~~~~~~aLVV~sD~ 152 (467)
++.+..|+.++||.+++-
T Consensus 314 ~~~g~~~g~~~L~~s~~d 331 (348)
T PRK06147 314 SRKGYGPGPNVLCHLSDD 331 (348)
T ss_pred HHcCcCCCCcEEEEecCC
Confidence 667777888999998863
|
|
| >PRK07661 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=91.08 E-value=1.2 Score=46.31 Aligned_cols=129 Identities=13% Similarity=0.163 Sum_probs=67.8
Q ss_pred eehhHHhhhhCCCcCeeEEeccceEeeccCCCCCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEeccCCCCCCcHHHHHHH
Q 012253 23 VLQEALEVHDGVSKGKYTVGLGQDCMAFCSEVEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQ 102 (467)
Q Consensus 23 v~~~el~~~~g~~~~k~~~Gig~r~~av~~~~Ed~~~ma~~Aa~~aL~~agi~~~~Id~Li~~Tes~~~~~ps~a~~v~~ 102 (467)
+..++.++.+|..+--+..|.+.... .+..... -...|++++|+++|++|+|||.+.+. |......-...+
T Consensus 257 l~s~~~A~~~g~~~~~~i~g~~~~~~---~~~~~~~-~~~~a~~~al~~agl~~~did~~ei~-----d~f~~~~l~~~e 327 (391)
T PRK07661 257 LMDREKAESDGLKPLAKFRSFAVAGV---PPEVMGI-GPIAAIPKALKLAGLELSDIGLFELN-----EAFASQSIQVIR 327 (391)
T ss_pred EecHHHHHHCCCCceEEEEEEEEecC---CCcccch-HHHHHHHHHHHHcCCCHHHCCEEEeC-----CHHHHHHHHHHH
Confidence 45556666667655523345555431 1222222 34689999999999999999999942 222233333445
Q ss_pred HhcccC-CCCeeEE--eeCC--cChHHHHHHHHHHHHHHhCCCCCCEEEEEEeecccccCCCCCCccccceeEEEecC
Q 012253 103 IFEKYG-NTDIEGV--DSTN--ACYGGTAALFNCVNWVESASWDGRYGLVVCTDSAVYAEGPARPTGGAAAVAMLIGP 175 (467)
Q Consensus 103 ~Lgl~G-~~~~~~~--di~~--aC~gg~~AL~~A~~~l~a~~~~~~~aLVV~sD~~~y~~~~~~~t~GdGAvA~Ll~~ 175 (467)
.||+.. +-+..+- -.++ +++|.-..+.++..+-+ . ++++.|+..+- .|..+.|+||++
T Consensus 328 ~lg~~~~~vN~~GG~~a~Ghp~gasG~~~~~el~~qL~~-~--~~~~g~~~~c~------------~gg~g~a~~~e~ 390 (391)
T PRK07661 328 ELGLDEEKVNVNGGAIALGHPLGCTGAKLTLSLIHEMKR-R--NEQFGIVTMCI------------GGGMGAAGVFEL 390 (391)
T ss_pred HcCCCCCCCCCCCChHHhCCcHHHHHHHHHHHHHHHHHh-c--CCCeEEEEEcc------------ccChhhEEEEEe
Confidence 777511 0111111 1122 44554444444444433 2 34666665432 355556777653
|
|
| >PRK08963 fadI 3-ketoacyl-CoA thiolase; Reviewed | Back alignment and domain information |
|---|
Probab=90.96 E-value=1.7 Score=45.69 Aligned_cols=61 Identities=10% Similarity=0.082 Sum_probs=37.7
Q ss_pred eeehhHHhhhhCCCcCeeEEeccceEeeccCCCCCHHHHHHHHHHHHHHHcCCCcCCcCEEEEE
Q 012253 22 CVLQEALEVHDGVSKGKYTVGLGQDCMAFCSEVEDVISMSLTVVTSLLEKYKIDPTQIGRLEVG 85 (467)
Q Consensus 22 ~v~~~el~~~~g~~~~k~~~Gig~r~~av~~~~Ed~~~ma~~Aa~~aL~~agi~~~~Id~Li~~ 85 (467)
.|..++.++..+..|-.+..|.+... ..+..+.......|++++|+++|++++|||.+.+-
T Consensus 275 vl~see~A~~l~~~p~~~i~g~~~~~---~~~~~~~~~~~~~a~~~al~~AGl~~~DiD~~Ei~ 335 (428)
T PRK08963 275 LLMSESRAKALGLTPLGYLRSYAFAA---IDVWQDMLLGPAYATPLALERAGLTLADLTLIDMH 335 (428)
T ss_pred EEecHHHHHHcCCCccEEEEEEeccc---CCchhhhhhHHHHHHHHHHHHcCCCHHHCCEEEEc
Confidence 34555566555655542223444332 12222333445679999999999999999999874
|
|
| >PRK09052 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=90.74 E-value=1.6 Score=45.49 Aligned_cols=74 Identities=7% Similarity=0.063 Sum_probs=45.7
Q ss_pred eehhHHhhhhCCCcC-eeEEeccceEeeccCCCCCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEeccCCCCCCcHHHHHH
Q 012253 23 VLQEALEVHDGVSKG-KYTVGLGQDCMAFCSEVEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLM 101 (467)
Q Consensus 23 v~~~el~~~~g~~~~-k~~~Gig~r~~av~~~~Ed~~~ma~~Aa~~aL~~agi~~~~Id~Li~~Tes~~~~~ps~a~~v~ 101 (467)
|..++.++.+|..+- ++ .|.+... . .+..... -...|++++|+++|++|+|||.+.+ . |......-...
T Consensus 265 l~se~~a~~~g~~~~a~i-~g~~~~~--~-~~~~~~~-~~~~A~~~al~~Agi~~~did~~ei----~-D~f~~~~l~~~ 334 (399)
T PRK09052 265 LVSEKALKQFNLTPLARF-VSFAVAG--V-PPEIMGI-GPIEAIPAALKQAGLKQDDLDWIEL----N-EAFAAQSLAVI 334 (399)
T ss_pred EecHHHHHHCCCCeeEEE-EEEEEec--c-CCCccch-hHHHHHHHHHHHcCCCHHHcCEEEe----C-cHHHHHHHHHH
Confidence 455666666666554 33 4555443 1 2222222 4468999999999999999999983 2 22233444556
Q ss_pred HHhcc
Q 012253 102 QIFEK 106 (467)
Q Consensus 102 ~~Lgl 106 (467)
+.||+
T Consensus 335 e~lg~ 339 (399)
T PRK09052 335 RDLGL 339 (399)
T ss_pred HHhCC
Confidence 77776
|
|
| >PRK05790 putative acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=90.56 E-value=2.4 Score=44.00 Aligned_cols=75 Identities=13% Similarity=0.075 Sum_probs=45.1
Q ss_pred eeehhHHhhhhCCCcC-eeEEeccceEeeccCCCCCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEeccCCCCCCcHHHHH
Q 012253 22 CVLQEALEVHDGVSKG-KYTVGLGQDCMAFCSEVEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFL 100 (467)
Q Consensus 22 ~v~~~el~~~~g~~~~-k~~~Gig~r~~av~~~~Ed~~~ma~~Aa~~aL~~agi~~~~Id~Li~~Tes~~~~~ps~a~~v 100 (467)
.|..+|.++.++.++- ++ .|.+... . .+..... -...|++++++++|++|+|||.+.+. |......-..
T Consensus 258 vl~s~e~a~~~~~~~~~~I-~g~~~~~--~-~~~~~~~-~~~~a~~~a~~~Agi~~~did~~e~~-----d~f~~~~l~~ 327 (393)
T PRK05790 258 VVMSEAKAKELGLTPLARI-VSYAVAG--V-DPAIMGI-GPVPAIRKALEKAGWSLADLDLIEIN-----EAFAAQALAV 327 (393)
T ss_pred EEecHHHHHHCCCCeeEEE-EEEEEcc--C-CCCccch-hHHHHHHHHHHHcCCCHHHCCEEEeC-----cHHHHHHHHH
Confidence 3555566666665554 33 4666543 1 2222222 23579999999999999999999852 2222333345
Q ss_pred HHHhcc
Q 012253 101 MQIFEK 106 (467)
Q Consensus 101 ~~~Lgl 106 (467)
.+.||+
T Consensus 328 ~e~lg~ 333 (393)
T PRK05790 328 EKELGL 333 (393)
T ss_pred HHHhCC
Confidence 667775
|
|
| >TIGR02445 fadA fatty oxidation complex, beta subunit FadA | Back alignment and domain information |
|---|
Probab=90.48 E-value=2.9 Score=43.34 Aligned_cols=41 Identities=7% Similarity=0.017 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHcCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHhcc
Q 012253 61 SLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEK 106 (467)
Q Consensus 61 a~~Aa~~aL~~agi~~~~Id~Li~~Tes~~~~~ps~a~~v~~~Lgl 106 (467)
...|++++|+++|++|+|||.+.+ .+ ......-...+.||+
T Consensus 282 ~~~a~~~al~~AGi~p~DId~~Ei----~d-aFa~~~l~~~e~lg~ 322 (385)
T TIGR02445 282 PVPATQKALKRAGLSISDIDVFEL----NE-AFAAQALPCLKDLGL 322 (385)
T ss_pred HHHHHHHHHHHcCCCHHHcCEEEE----cc-ccHHHHHHHHHHcCC
Confidence 467899999999999999999988 22 233444455677776
|
This subunit of the FadBA complex has acetyl-CoA C-acyltransferase (EC 2.3.1.16) activity, and is also known as beta-ketothiolase and fatty oxidation complex, beta subunit. This protein is almost always located adjacent to FadB (TIGR02437). The FadBA complex is the major complex active for beta-oxidation of fatty acids in E. coli. |
| >TIGR01930 AcCoA-C-Actrans acetyl-CoA acetyltransferases | Back alignment and domain information |
|---|
Probab=90.28 E-value=2.2 Score=44.19 Aligned_cols=60 Identities=12% Similarity=0.067 Sum_probs=38.4
Q ss_pred eeehhHHhhhhCCCcCeeEEeccceEeeccCCCCCHHHHHHHHHHHHHHHcCCCcCCcCEEEEE
Q 012253 22 CVLQEALEVHDGVSKGKYTVGLGQDCMAFCSEVEDVISMSLTVVTSLLEKYKIDPTQIGRLEVG 85 (467)
Q Consensus 22 ~v~~~el~~~~g~~~~k~~~Gig~r~~av~~~~Ed~~~ma~~Aa~~aL~~agi~~~~Id~Li~~ 85 (467)
.|..++.++.++.+|--+..|.+.... .++.. ..-...|++++|+++|++|+|||.+.+.
T Consensus 253 vl~s~~~A~~~~~~~~~~i~g~g~~~~---~~~~~-~~~~~~a~~~a~~~Agi~~~did~~e~~ 312 (386)
T TIGR01930 253 LLMSEERAKELGLTPLARIVSFAVAGV---DPEIM-GLGPVPAIPKALKKAGLSISDIDLFEIN 312 (386)
T ss_pred EEecHHHHHHCCCCccEEEEEEEEecC---CCccc-cccHHHHHHHHHHHcCCCHHHCCeeehc
Confidence 355566666667665322346665432 22222 2233589999999999999999999653
|
This model represents a large family of enzymes which catalyze the thiolysis of a linear fatty acid CoA (or acetoacetyl-CoA) using a second CoA molecule to produce acetyl-CoA and a CoA-ester product two carbons shorter (or, alternatively, the condensation of two molecules of acetyl-CoA to produce acetoacetyl-CoA and CoA). This enzyme is also known as "thiolase", "3-ketoacyl-CoA thiolase", "beta-ketothiolase" and "Fatty oxidation complex beta subunit". When catalyzing the degradative reaction on fatty acids the corresponding EC number is 2.3.1.16. The condensation reaction corresponds to 2.3.1.9. Note that the enzymes which catalyze the condensation are generally not involved in fatty acid biosynthesis, which is carried out by a decarboxylating condensation of acetyl and malonyl esters of acyl carrier proteins. Rather, this activity may produce acetoacetyl-CoA for pathways such as IPP biosynthesis in the absence of sufficient fatt |
| >PF02803 Thiolase_C: Thiolase, C-terminal domain; InterPro: IPR020617 Two different types of thiolase [, , ] are found both in eukaryotes and in prokaryotes: acetoacetyl-CoA thiolase (2 | Back alignment and domain information |
|---|
Probab=90.15 E-value=1.6 Score=37.59 Aligned_cols=95 Identities=17% Similarity=0.248 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHcCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHhcccC---CCCeeEEeeCC--cChHHHHHHHHHHHH
Q 012253 60 MSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYG---NTDIEGVDSTN--ACYGGTAALFNCVNW 134 (467)
Q Consensus 60 ma~~Aa~~aL~~agi~~~~Id~Li~~Tes~~~~~ps~a~~v~~~Lgl~G---~~~~~~~di~~--aC~gg~~AL~~A~~~ 134 (467)
=.+.|++++|+++|++++|||.+.+- +..-+..-...+.||+.. |++=-++-+.+ +|+|....+..+..+
T Consensus 23 ~p~~A~~~al~~ag~~~~did~~Ei~-----EaFA~~~l~~~~~lg~~~~~vN~~GG~la~GHP~gasG~r~~~~l~~~L 97 (123)
T PF02803_consen 23 GPVPAARKALERAGLTPDDIDVIEIN-----EAFAAQVLAFLEALGLDPEKVNPNGGALALGHPLGASGARLVVELAHQL 97 (123)
T ss_dssp THHHHHHHHHHHHT--GGGESEEEE-------SBHHHHHHHHHHHTTGGGGBSTT--HHHH-BHTTTHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCCccccchhhcc-----chhhhHHHHhhccccccccccCcccccccccccccccccchhhhhHHHH
Confidence 34579999999999999999999983 223345567777787611 11111112222 666666666666665
Q ss_pred HHhCCCCCCEEEEEEeecccccCCCCCCccccceeEEEec
Q 012253 135 VESASWDGRYGLVVCTDSAVYAEGPARPTGGAAAVAMLIG 174 (467)
Q Consensus 135 l~a~~~~~~~aLVV~sD~~~y~~~~~~~t~GdGAvA~Ll~ 174 (467)
-..+ +++.|+-.+- .|..+.|+||+
T Consensus 98 ~~~~---~~~gla~~~~------------ggG~g~a~lle 122 (123)
T PF02803_consen 98 RRRG---GRYGLAAICA------------GGGQGSAVLLE 122 (123)
T ss_dssp HHHT---TSEEEEEEEE------------TTTEEEEEEEE
T ss_pred HHhc---hhhhhHHhcc------------cceeeEEEEEE
Confidence 4433 3666655432 45566777775
|
3.1.9 from EC) and 3-ketoacyl-CoA thiolase (2.3.1.16 from EC). 3-ketoacyl-CoA thiolase (also called thiolase I) has a broad chain-length specificity for its substrates and is involved in degradative pathways such as fatty acid beta-oxidation. Acetoacetyl-CoA thiolase (also called thiolase II) is specific for the thiolysis of acetoacetyl-CoA and involved in biosynthetic pathways such as poly beta-hydroxybutyrate synthesis or steroid biogenesis. In eukaryotes, there are two forms of 3-ketoacyl-CoA thiolase: one located in the mitochondrion and the other in peroxisomes. There are two conserved cysteine residues important for thiolase activity. The first located in the N-terminal section of the enzymes is involved in the formation of an acyl-enzyme intermediate; the second located at the C-terminal extremity is the active site base involved in deprotonation in the condensation reaction. Mammalian nonspecific lipid-transfer protein (nsL-TP) (also known as sterol carrier protein 2) is a protein which seems to exist in two different forms: a 14 Kd protein (SCP-2) and a larger 58 Kd protein (SCP-x). The former is found in the cytoplasm or the mitochondria and is involved in lipid transport; the latter is found in peroxisomes. The C-terminal part of SCP-x is identical to SCP-2 while the N-terminal portion is evolutionary related to thiolases [].; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0008152 metabolic process; PDB: 2WUA_B 4E1L_B 3SVK_A 1WDK_D 1WDM_D 2D3T_D 1WDL_C 2IB8_B 2IBU_A 2IB9_C .... |
| >PRK05656 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=90.05 E-value=2.6 Score=43.80 Aligned_cols=75 Identities=8% Similarity=-0.032 Sum_probs=44.8
Q ss_pred eeehhHHhhhhCCCcC-eeEEeccceEeeccCCCCCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEeccCCCCCCcHHHHH
Q 012253 22 CVLQEALEVHDGVSKG-KYTVGLGQDCMAFCSEVEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFL 100 (467)
Q Consensus 22 ~v~~~el~~~~g~~~~-k~~~Gig~r~~av~~~~Ed~~~ma~~Aa~~aL~~agi~~~~Id~Li~~Tes~~~~~ps~a~~v 100 (467)
.|..++-++.+|..+- ++ .|.+... . .+.... .-...|++++|+++|++|+|||.+.+. +......-..
T Consensus 258 vl~s~~~A~~~g~~~~a~i-~g~~~~~--~-~~~~~~-~~~~~a~~~al~~agl~~~dId~~e~~-----d~f~~~~~~~ 327 (393)
T PRK05656 258 LLMSAAKAKALGLPVLAKI-AAYANAG--V-DPAIMG-IGPVSATRRCLDKAGWSLAELDLIEAN-----EAFAAQSLAV 327 (393)
T ss_pred EEecHHHHHHCCCCeeEEE-EEEEEec--C-CCcccc-hhHHHHHHHHHHHcCCCHHHCCEEEec-----CccHHHHHHH
Confidence 3455566666665543 33 3555432 1 222211 123579999999999999999999972 2233444456
Q ss_pred HHHhcc
Q 012253 101 MQIFEK 106 (467)
Q Consensus 101 ~~~Lgl 106 (467)
.+.||+
T Consensus 328 ~e~lg~ 333 (393)
T PRK05656 328 GKELGW 333 (393)
T ss_pred HHHhCC
Confidence 677775
|
|
| >TIGR00748 HMG_CoA_syn_Arc hydroxymethylglutaryl-CoA synthase, putative | Back alignment and domain information |
|---|
Probab=89.48 E-value=0.93 Score=46.22 Aligned_cols=83 Identities=14% Similarity=0.157 Sum_probs=58.1
Q ss_pred CHHHHHHHHHHHHHHHcCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHhcccCCC-Cee-EE---eeCC-cChHHHHHHH
Q 012253 56 DVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNT-DIE-GV---DSTN-ACYGGTAALF 129 (467)
Q Consensus 56 d~~~ma~~Aa~~aL~~agi~~~~Id~Li~~Tes~~~~~ps~a~~v~~~Lgl~G~~-~~~-~~---di~~-aC~gg~~AL~ 129 (467)
.+...+..+++++|+++|++++|||.+++..-+ +.+--.+++.||+ ++ .+. .+ ++.| ++++...+|.
T Consensus 205 ~~~~~~~~~~~~~L~~~gl~~~did~~i~Hq~~-----~~~~~~~~~~lgl--~~ek~~~~~~~~~~GNt~sAsipl~L~ 277 (345)
T TIGR00748 205 AYFHHVVTAAKGLMEKLGLTPEDFDYAVFHQPN-----GKFYLVAARMLGF--PKEQVKPGLLTPRIGNTYSGATPVGLS 277 (345)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHcCEEEeCCCC-----hHHHHHHHHHcCC--CHHHeeccccccccCchhhhHHHHHHH
Confidence 467778899999999999999999999984322 2244457888887 32 222 11 5555 7778778887
Q ss_pred HHHHHHHhCCCCCCEEEEEE
Q 012253 130 NCVNWVESASWDGRYGLVVC 149 (467)
Q Consensus 130 ~A~~~l~a~~~~~~~aLVV~ 149 (467)
.+...++ +|+++|+++
T Consensus 278 ~~~~~~~----~Gd~vll~~ 293 (345)
T TIGR00748 278 AVLDIAE----PGDRILAVS 293 (345)
T ss_pred HHHHhcC----CCCEEEEEE
Confidence 7765332 678888876
|
Thus, although there is no experimental evidence supporting this name, the bioinformatics-based conclusion appears to be sound. |
| >PLN02644 acetyl-CoA C-acetyltransferase | Back alignment and domain information |
|---|
Probab=89.34 E-value=2.6 Score=43.77 Aligned_cols=74 Identities=9% Similarity=0.145 Sum_probs=43.2
Q ss_pred eehhHHhhhhCCCc-CeeEEeccceEeeccCCCCCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEeccCCCCCCcHHHHHH
Q 012253 23 VLQEALEVHDGVSK-GKYTVGLGQDCMAFCSEVEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLM 101 (467)
Q Consensus 23 v~~~el~~~~g~~~-~k~~~Gig~r~~av~~~~Ed~~~ma~~Aa~~aL~~agi~~~~Id~Li~~Tes~~~~~ps~a~~v~ 101 (467)
|..++.++..+..+ .++ .|.+... ...++.......|++++|+++|++|+|||.+.+. |......-...
T Consensus 259 l~s~~~A~~~~~~~~a~I-~g~~~~~----~~~~~~~~~~~~a~~~al~~Agi~~~Did~~Ei~-----d~f~~~~l~~~ 328 (394)
T PLN02644 259 LVSGEKALELGLQVIAKI-RGYADAA----QAPELFTTAPALAIPKALKHAGLEASQVDYYEIN-----EAFSVVALANQ 328 (394)
T ss_pred eccHHHHHHCCCCeEEEE-EEEEEcC----CCCcccchhHHHHHHHHHHHcCCCHHHCCEEEeC-----cHHHHHHHHHH
Confidence 44445555555544 233 3444322 1112233334569999999999999999999972 22233344556
Q ss_pred HHhcc
Q 012253 102 QIFEK 106 (467)
Q Consensus 102 ~~Lgl 106 (467)
+.||+
T Consensus 329 e~lg~ 333 (394)
T PLN02644 329 KLLGL 333 (394)
T ss_pred HHhCC
Confidence 67776
|
|
| >PRK08235 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=88.17 E-value=2.8 Score=43.64 Aligned_cols=75 Identities=16% Similarity=0.100 Sum_probs=44.3
Q ss_pred eehhHHhhhhCCCcCeeEEeccceEeeccCCCCCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEeccCCCCCCcHHHHHHH
Q 012253 23 VLQEALEVHDGVSKGKYTVGLGQDCMAFCSEVEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQ 102 (467)
Q Consensus 23 v~~~el~~~~g~~~~k~~~Gig~r~~av~~~~Ed~~~ma~~Aa~~aL~~agi~~~~Id~Li~~Tes~~~~~ps~a~~v~~ 102 (467)
|..++.++..+..|-.+..|.+.. .. ...+.......|++++|+++|++|+|||.+.+ . |......-...+
T Consensus 259 l~s~~~A~~~~~~p~~~i~g~~~~--~~--~~~~~~~~~~~a~~~al~~agl~~~did~~e~----~-d~f~~~~l~~~e 329 (393)
T PRK08235 259 LMSEDRAKQEGRKPLATILAHTAI--AV--EAKDFPRTPGYAINALLEKTGKTVEDIDLFEI----N-EAFAAVALASTE 329 (393)
T ss_pred EecHHHHHHCCCCceEEEEEEEec--cc--ChhhhcchHHHHHHHHHHHhCCCHHHCCeehh----c-chhHHHHHHHHH
Confidence 445555555555554333343322 11 11222234568999999999999999999974 2 223344445667
Q ss_pred Hhcc
Q 012253 103 IFEK 106 (467)
Q Consensus 103 ~Lgl 106 (467)
.||+
T Consensus 330 ~lg~ 333 (393)
T PRK08235 330 IAGI 333 (393)
T ss_pred HhCC
Confidence 7776
|
|
| >PLN02287 3-ketoacyl-CoA thiolase | Back alignment and domain information |
|---|
Probab=87.90 E-value=3.8 Score=43.48 Aligned_cols=100 Identities=11% Similarity=0.119 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHcCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHhcccC-CCCeeEE--eeCC--cChHHHHHHHHHHHHH
Q 012253 61 SLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYG-NTDIEGV--DSTN--ACYGGTAALFNCVNWV 135 (467)
Q Consensus 61 a~~Aa~~aL~~agi~~~~Id~Li~~Tes~~~~~ps~a~~v~~~Lgl~G-~~~~~~~--di~~--aC~gg~~AL~~A~~~l 135 (467)
...|++++|+++|++|+|||.+.+. + ..........+.||+.. +-|..+= -+++ ++.|....+.++..+-
T Consensus 333 ~~~A~~~al~~Agl~~~DID~~Ei~----d-aFa~~~l~~~e~lG~~~~pvN~sGG~la~GHp~gAsG~~~v~~l~~qL~ 407 (452)
T PLN02287 333 PAVAIPAAVKAAGLELDDIDLFEIN----E-AFASQFVYCCKKLGLDPEKVNVNGGAIALGHPLGATGARCVATLLHEMK 407 (452)
T ss_pred HHHHHHHHHHHcCCCHHHCCEEEec----c-hHHHHHHHHHHHcCCCccccCCCCcHHhccCcHHHHHHHHHHHHHHHHH
Confidence 4689999999999999999999753 2 22222333456777621 0111111 1122 4444444444444433
Q ss_pred HhCCCCCCEEEEEEeecccccCCCCCCccccceeEEEecCCCC
Q 012253 136 ESASWDGRYGLVVCTDSAVYAEGPARPTGGAAAVAMLIGPDAP 178 (467)
Q Consensus 136 ~a~~~~~~~aLVV~sD~~~y~~~~~~~t~GdGAvA~Ll~~~~~ 178 (467)
+.+. +++++|+..+- .|--++||||+.-+.
T Consensus 408 ~~~~-~~~~gl~~~c~------------ggG~g~a~~ie~~~~ 437 (452)
T PLN02287 408 RRGK-DCRFGVVSMCI------------GTGMGAAAVFERGDS 437 (452)
T ss_pred hcCC-CCCeeEEEEcc------------ccCceeEEEEEecCc
Confidence 3221 11566655432 455568889887653
|
|
| >PRK06690 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=87.85 E-value=1.9 Score=44.34 Aligned_cols=30 Identities=20% Similarity=0.377 Sum_probs=25.8
Q ss_pred hcCCCCccccceeccCCchHHHHHHHHHhh
Q 012253 236 EGRQFSMLDVDYFVFHSPYNKLVQKSFARL 265 (467)
Q Consensus 236 ~~~~~~~~d~d~~i~H~p~~k~~~k~~~~l 265 (467)
++++++++|||++.+|++|..+.....+.|
T Consensus 269 ~~Agl~~~Did~~ei~eafa~~~~~~~e~l 298 (361)
T PRK06690 269 NEMNMKVEDIDYFEINEAFASKVVACAKEL 298 (361)
T ss_pred HHcCCCHHHcCEeeecchhHHHHHHHHHhc
Confidence 445799999999999999999888877776
|
|
| >PRK07851 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=87.62 E-value=2.3 Score=44.37 Aligned_cols=57 Identities=12% Similarity=0.159 Sum_probs=35.7
Q ss_pred eehhHHhhhhCCCcC-eeEEeccceEeeccCCCCCHHHHHHHHHHHHHHHcCCCcCCcCEEEE
Q 012253 23 VLQEALEVHDGVSKG-KYTVGLGQDCMAFCSEVEDVISMSLTVVTSLLEKYKIDPTQIGRLEV 84 (467)
Q Consensus 23 v~~~el~~~~g~~~~-k~~~Gig~r~~av~~~~Ed~~~ma~~Aa~~aL~~agi~~~~Id~Li~ 84 (467)
|..+|.++..+..+- ++ .|.+.... .++..... ...|++++|+++|++|+|||.+..
T Consensus 271 l~s~e~A~~~~~~~~a~I-~g~~~~~~---~~~~~~~~-~~~a~~~al~~Agi~~~did~~ei 328 (406)
T PRK07851 271 IMSDTKARELGLTPLARI-VSTGVSGL---SPEIMGLG-PVEASKQALARAGMSIDDIDLVEI 328 (406)
T ss_pred EccHHHHHHcCCCccEEE-EEEEEccC---CCCccchh-HHHHHHHHHHHhCCCHHHCCeehh
Confidence 455555555565553 33 45554421 12212222 458999999999999999999964
|
|
| >PRK08256 lipid-transfer protein; Provisional | Back alignment and domain information |
|---|
Probab=86.72 E-value=4.8 Score=41.73 Aligned_cols=30 Identities=13% Similarity=0.118 Sum_probs=26.0
Q ss_pred cCCCCccccceeccCCchHHHHHHHHHhhh
Q 012253 237 GRQFSMLDVDYFVFHSPYNKLVQKSFARLF 266 (467)
Q Consensus 237 ~~~~~~~d~d~~i~H~p~~k~~~k~~~~l~ 266 (467)
.++++++|||.+-+|.+|.-+....++.|.
T Consensus 276 ~ag~~~~DiD~~ei~d~f~~~~l~~le~lg 305 (391)
T PRK08256 276 QAGIGPEDIDVVELHDCFSANELLTYEALG 305 (391)
T ss_pred HcCCCHHHCCEEeeccCCcHHHHHHHHHcC
Confidence 347899999999999999998888888774
|
|
| >PRK06816 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed | Back alignment and domain information |
|---|
Probab=86.62 E-value=2.4 Score=43.73 Aligned_cols=88 Identities=14% Similarity=0.128 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHHHcCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHh-----cccCCCCee-EE-eeCC-cChHHHHHHH
Q 012253 58 ISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIF-----EKYGNTDIE-GV-DSTN-ACYGGTAALF 129 (467)
Q Consensus 58 ~~ma~~Aa~~aL~~agi~~~~Id~Li~~Tes~~~~~ps~a~~v~~~L-----gl~G~~~~~-~~-di~~-aC~gg~~AL~ 129 (467)
.....++.+++|+++|+.++|||.++... ..+.+--.+.+.| |+. ..++. .+ +++| +|++...+|.
T Consensus 271 ~~~~~~~i~~~L~~~gl~~~DId~~v~Hq-----~n~~~~~~v~~~l~~~~~gl~-~~k~~~~~~~~GNt~sAsipi~L~ 344 (378)
T PRK06816 271 VVYTIKPLLELVDKRNLDPDDIDYFLPHY-----SSEYFREKIVELLAKAGFMIP-EEKWFTNLATVGNTGSASIYIMLD 344 (378)
T ss_pred HHHHHHHHHHHHHHcCCChhhCCEEeeCc-----ccHHHHHHHHHHHHhccCCCC-hhheEEeccccccccchHHHHHHH
Confidence 34557888999999999999999999743 2334445667766 651 12222 22 3333 6677777776
Q ss_pred HHHHHHHhCC-CCCCEEEEEEeeccc
Q 012253 130 NCVNWVESAS-WDGRYGLVVCTDSAV 154 (467)
Q Consensus 130 ~A~~~l~a~~-~~~~~aLVV~sD~~~ 154 (467)
.+ ++.+. .+|+++++++.+...
T Consensus 345 ~a---~~~g~~~~Gd~vl~~~~~s~~ 367 (378)
T PRK06816 345 EL---LNSGRLKPGQKILCFVPESGR 367 (378)
T ss_pred HH---HHcCCCCCCCEEEEEEecccc
Confidence 55 34443 277889888777553
|
|
| >PRK06504 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=86.08 E-value=8.2 Score=40.11 Aligned_cols=45 Identities=16% Similarity=0.149 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHcCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHhcc
Q 012253 57 VISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEK 106 (467)
Q Consensus 57 ~~~ma~~Aa~~aL~~agi~~~~Id~Li~~Tes~~~~~ps~a~~v~~~Lgl 106 (467)
.......|++++++++|++|+|||.+.+-- ......-...+.||+
T Consensus 286 ~~~~~~~a~~~a~~~agl~~~Did~~Ei~d-----~Fa~~~l~~~e~lG~ 330 (390)
T PRK06504 286 MLEAPLPATERALKKAGMKIDDIDLYEVNE-----AFASVPLAWLKATGA 330 (390)
T ss_pred hhccHHHHHHHHHHHcCCCHHHCCEEEecc-----cchHHHHHHHHHhCC
Confidence 334556799999999999999999998742 233444566778887
|
|
| >PRK08947 fadA 3-ketoacyl-CoA thiolase; Reviewed | Back alignment and domain information |
|---|
Probab=85.25 E-value=8.6 Score=39.88 Aligned_cols=41 Identities=7% Similarity=0.086 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHcCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHhcc
Q 012253 61 SLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEK 106 (467)
Q Consensus 61 a~~Aa~~aL~~agi~~~~Id~Li~~Tes~~~~~ps~a~~v~~~Lgl 106 (467)
...|++++|+++|++|+|||.+.+- |......-...+.||+
T Consensus 284 ~~~a~~~al~~Agl~~~DId~~El~-----d~F~~~~l~~~e~lg~ 324 (387)
T PRK08947 284 PVPATQKALKRAGLSISDIDVFELN-----EAFAAQSLPCLKDLGL 324 (387)
T ss_pred HHHHHHHHHHHcCCCHHHCCEEEec-----ccchHHHHHHHHHcCC
Confidence 4678999999999999999999863 2233444455677776
|
|
| >PRK06445 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=85.20 E-value=8.8 Score=39.89 Aligned_cols=29 Identities=17% Similarity=0.330 Sum_probs=24.6
Q ss_pred cCCCCccccceeccCCchHHHHHHHHHhh
Q 012253 237 GRQFSMLDVDYFVFHSPYNKLVQKSFARL 265 (467)
Q Consensus 237 ~~~~~~~d~d~~i~H~p~~k~~~k~~~~l 265 (467)
.++++++|||++=+|-+|.-+.-...+.|
T Consensus 304 ~Agl~~~dId~~e~~d~f~~~~l~~~e~l 332 (394)
T PRK06445 304 KAGLSVKDIDLWEINEAFAVVVLYAIKEL 332 (394)
T ss_pred HcCCCHHHcCEEEecccchHHHHHHHHHh
Confidence 34788999999999999998877777766
|
|
| >PRK07108 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=85.05 E-value=3.2 Score=43.13 Aligned_cols=58 Identities=16% Similarity=0.121 Sum_probs=35.0
Q ss_pred eehhHHhhhhCCCcCeeEEeccceEeeccCCCCCHHHHHHHHHHHHHHHcCCCcCCcCEEEE
Q 012253 23 VLQEALEVHDGVSKGKYTVGLGQDCMAFCSEVEDVISMSLTVVTSLLEKYKIDPTQIGRLEV 84 (467)
Q Consensus 23 v~~~el~~~~g~~~~k~~~Gig~r~~av~~~~Ed~~~ma~~Aa~~aL~~agi~~~~Id~Li~ 84 (467)
|..++.++.+|..+-.+..|.+... . +++... .-...|++++|+++|++|+|||.+.+
T Consensus 258 l~s~~~A~~~g~~~~~~i~g~~~~~--~-~~~~~~-~~~~~a~~~al~~agl~~~Did~~ei 315 (392)
T PRK07108 258 VMNAKVAEREGLQPLGIFRGFAVAG--C-EPDEMG-IGPVFAVPKLLKQAGLKVDDIDLWEL 315 (392)
T ss_pred EecHHHHHHCCCCceEEEEEEEEec--c-CCcccc-hhHHHHHHHHHHHcCCCHHHcCchHh
Confidence 3444555555544432223444332 1 222222 23468999999999999999999973
|
|
| >PRK12879 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed | Back alignment and domain information |
|---|
Probab=84.53 E-value=3 Score=41.77 Aligned_cols=80 Identities=16% Similarity=-0.025 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHcCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHhcccCCCC-ee-EE-eeCC-cChHHHHHHHHHHHHHH
Q 012253 61 SLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTD-IE-GV-DSTN-ACYGGTAALFNCVNWVE 136 (467)
Q Consensus 61 a~~Aa~~aL~~agi~~~~Id~Li~~Tes~~~~~ps~a~~v~~~Lgl~G~~~-~~-~~-di~~-aC~gg~~AL~~A~~~l~ 136 (467)
..++.+++|+++|++++|||.+++.. ..+.+-..+.+.||+ +.+ +. .+ +++| +|++...+|. .+++
T Consensus 227 ~~~~i~~~L~~~g~~~~did~~~~h~-----~~~~~~~~~~~~lg~--~~~~~~~~~~~~Gn~~sas~~~~L~---~~~~ 296 (325)
T PRK12879 227 MPKGARQVLEKAGLTKDDIDWVIPHQ-----ANLRIIESLCEKLGI--PMEKTLVSVEYYGNTSAATIPLALD---LALE 296 (325)
T ss_pred HHHHHHHHHHHcCCCHHHCCEEEECC-----CCHHHHHHHHHHcCC--CHHHhhhhHhhhCchHHHHHHHHHH---HHHH
Confidence 45678899999999999999999853 234556688999998 332 21 11 2222 3333444443 4455
Q ss_pred hCC-CCCCEEEEEEe
Q 012253 137 SAS-WDGRYGLVVCT 150 (467)
Q Consensus 137 a~~-~~~~~aLVV~s 150 (467)
.+. .+|+++|+++.
T Consensus 297 ~g~~~~Gd~vll~~~ 311 (325)
T PRK12879 297 QGKIKPGDTLLLYGF 311 (325)
T ss_pred cCCCCCCCEEEEEEE
Confidence 553 26788888774
|
|
| >CHL00203 fabH 3-oxoacyl-acyl-carrier-protein synthase 3; Provisional | Back alignment and domain information |
|---|
Probab=84.25 E-value=3 Score=41.96 Aligned_cols=80 Identities=11% Similarity=0.059 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHcCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHhcccCCCCeeEEeeC---C-cChHHHHHHHHHHHHH
Q 012253 60 MSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDST---N-ACYGGTAALFNCVNWV 135 (467)
Q Consensus 60 ma~~Aa~~aL~~agi~~~~Id~Li~~Tes~~~~~ps~a~~v~~~Lgl~G~~~~~~~di~---~-aC~gg~~AL~~A~~~l 135 (467)
....+++++|+++|++++|||.+++.. ..+.+-..|.+.||+ +++-....+. | +|++...+|..+ +
T Consensus 227 ~~~~~i~~~L~~~g~~~~did~~~~hq-----~~~~~~~~~~~~lgl--~~~k~~~~l~~~Gn~~sasi~~~L~~~---~ 296 (326)
T CHL00203 227 QVPAVIIKCLNALNISIDEVDWFILHQ-----ANKRILEAIANRLSV--PNSKMITNLEKYGNTSAASIPLALDEA---I 296 (326)
T ss_pred HHHHHHHHHHHHcCCCHHHCCEEEECC-----CCHHHHHHHHHHhCC--CHHHhhhHHHhhCcHHHHHHHHHHHHH---H
Confidence 345568999999999999999999843 234455678999998 4322222232 2 333444444433 4
Q ss_pred HhCC-CCCCEEEEEE
Q 012253 136 ESAS-WDGRYGLVVC 149 (467)
Q Consensus 136 ~a~~-~~~~~aLVV~ 149 (467)
+.+. .+|.++|+++
T Consensus 297 ~~g~~~~Gd~vll~~ 311 (326)
T CHL00203 297 QNNKIQPGQIIVLSG 311 (326)
T ss_pred HhCCCCCCCEEEEEE
Confidence 5543 2677888876
|
|
| >PRK07204 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed | Back alignment and domain information |
|---|
Probab=84.25 E-value=3.3 Score=41.65 Aligned_cols=82 Identities=7% Similarity=-0.012 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHcCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHhcccCCCCeeEEeeC--CcChHHHHHHHHHHHHHHh
Q 012253 60 MSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDST--NACYGGTAALFNCVNWVES 137 (467)
Q Consensus 60 ma~~Aa~~aL~~agi~~~~Id~Li~~Tes~~~~~ps~a~~v~~~Lgl~G~~~~~~~di~--~aC~gg~~AL~~A~~~l~a 137 (467)
...++.+++|+++|++++|||.+++... ...+-..+++.||+ +++.....+. ..|.+...-+.+ ..+++.
T Consensus 231 ~~~~~i~~~L~~~gl~~~did~~~~H~~-----~~~~~~~i~~~l~l--~~e~~~~~~~~~Gn~~sas~~~~L-~~~~~~ 302 (329)
T PRK07204 231 YLMKFIDKLLMDAGYTLADIDLIVPHQA-----SGPAMRLIRKKLGV--DEERFVTIFEDHGNMIAASIPVAL-FEAIKQ 302 (329)
T ss_pred HHHHHHHHHHHHcCCCHHHCCEEEeCCC-----CHHHHHHHHHHcCC--CHHHhhhhHhhhCcHHHHHHHHHH-HHHHHc
Confidence 3457888999999999999999997432 22345688999998 3322211222 233332222222 234555
Q ss_pred CC-CCCCEEEEEE
Q 012253 138 AS-WDGRYGLVVC 149 (467)
Q Consensus 138 ~~-~~~~~aLVV~ 149 (467)
+. .+|.++|+++
T Consensus 303 g~~~~Gd~vll~~ 315 (329)
T PRK07204 303 KKVQRGNKILLLG 315 (329)
T ss_pred CCCCCCCEEEEEE
Confidence 53 2677888775
|
|
| >cd00327 cond_enzymes Condensing enzymes; Family of enzymes that catalyze a (decarboxylating or non-decarboxylating) Claisen-like condensation reaction | Back alignment and domain information |
|---|
Probab=84.21 E-value=11 Score=35.97 Aligned_cols=94 Identities=12% Similarity=-0.047 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHHHcCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHhcccC-CCCeeEEeeCC-cChHHHHHHHHHHHH
Q 012253 57 VISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYG-NTDIEGVDSTN-ACYGGTAALFNCVNW 134 (467)
Q Consensus 57 ~~~ma~~Aa~~aL~~agi~~~~Id~Li~~Tes~~~~~ps~a~~v~~~Lgl~G-~~~~~~~di~~-aC~gg~~AL~~A~~~ 134 (467)
......++.+++|+++|++++|||.++..........+..........+... +.....-.+.| .++++...|..+...
T Consensus 143 ~~~~~~~~i~~~l~~ag~~~~did~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~as~~~~l~~~~~~ 222 (254)
T cd00327 143 SGEGLARAARKALEGAGLTPSDIDYVEAHGTGTPIGDAVELALGLDPDGVRSPAVSATLIMTGHPLGAAGLAILDELLLM 222 (254)
T ss_pred ChHHHHHHHHHHHHHcCCCHHHCCEEEccCCcCccccHHHHHHHHHHhCCCCCceeccccccccchHHHHHHHHHHHHHH
Confidence 4456678899999999999999999986433322222211222222212100 00111223444 566666666666665
Q ss_pred HHhCC-----CCCCEEEEEEe
Q 012253 135 VESAS-----WDGRYGLVVCT 150 (467)
Q Consensus 135 l~a~~-----~~~~~aLVV~s 150 (467)
++.+. .+++++|+.+.
T Consensus 223 ~~~~~~~~~~~~~~~~l~~~~ 243 (254)
T cd00327 223 LEHEFIPPTPREPRTVLLLGF 243 (254)
T ss_pred HhCCCcCCCCCCcCEEEEeeE
Confidence 55441 13466666554
|
Members are share strong structural similarity, and are involved in the synthesis and degradation of fatty acids, and the production of polyketides, a diverse group of natural products. |
| >PRK06633 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=83.75 E-value=5.4 Score=41.52 Aligned_cols=58 Identities=12% Similarity=0.078 Sum_probs=36.9
Q ss_pred eeehhHHhhhhCCCcC-eeEEeccceEeeccCCCCCHHHHHHHHHHHHHHHcCCCcCCcCEEEE
Q 012253 22 CVLQEALEVHDGVSKG-KYTVGLGQDCMAFCSEVEDVISMSLTVVTSLLEKYKIDPTQIGRLEV 84 (467)
Q Consensus 22 ~v~~~el~~~~g~~~~-k~~~Gig~r~~av~~~~Ed~~~ma~~Aa~~aL~~agi~~~~Id~Li~ 84 (467)
.+..++.++.+|..+- ++ .|.+... . ++.. .......|++++|+++|++|+|||.+.+
T Consensus 257 vl~see~A~~~g~~p~a~I-~g~~~~~--~-~~~~-~~~~~~~a~~~Al~~AGl~p~DID~~ei 315 (392)
T PRK06633 257 MVVSEEALKKHNLTPLARI-VSYASAG--V-DPSI-MGTAPVPASQKALSKAGWSVNDLEVIEV 315 (392)
T ss_pred EEecHHHHHHCCCCeeEEE-EEEEEec--C-Ccch-hchHHHHHHHHHHHHcCCCHHHcCeeeh
Confidence 3455666666665553 44 3544432 1 1111 1134468999999999999999999994
|
|
| >PRK09268 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=83.71 E-value=8.1 Score=40.66 Aligned_cols=63 Identities=13% Similarity=0.092 Sum_probs=38.4
Q ss_pred eeehhHHhhhhCCCcCeeE-EeccceEeeccCCCCCHHHHHHHHHHHHHHHcCCCcCCcCEEEEE
Q 012253 22 CVLQEALEVHDGVSKGKYT-VGLGQDCMAFCSEVEDVISMSLTVVTSLLEKYKIDPTQIGRLEVG 85 (467)
Q Consensus 22 ~v~~~el~~~~g~~~~k~~-~Gig~r~~av~~~~Ed~~~ma~~Aa~~aL~~agi~~~~Id~Li~~ 85 (467)
.|..++.++..+.+|-++. .+.....-.. ....+.......|++++++++|++|+|||.+.+-
T Consensus 272 vl~s~~~A~~l~~~p~~~i~~~~~~~~~~~-~~~~~~~~~~~~a~~~a~~~AGl~~~Did~~Ei~ 335 (427)
T PRK09268 272 LLASEEWAAEHGLPVLAYLVDAETAAVDFV-HGKEGLLMAPAYAVPRLLARNGLTLQDFDFYEIH 335 (427)
T ss_pred EEecHHHHHHcCCCceEEEEEEEEEcCCcc-cccchhhccHHHHHHHHHHHcCCCHHHCCEEEec
Confidence 4666677776666664332 2221111000 1113344455679999999999999999999984
|
|
| >PRK08257 acetyl-CoA acetyltransferase; Validated | Back alignment and domain information |
|---|
Probab=83.66 E-value=4.2 Score=43.72 Aligned_cols=119 Identities=18% Similarity=0.099 Sum_probs=66.5
Q ss_pred eeehhHHhhhhCCCcCe--eEEeccceEe--eccCCCCCH--HHHHHHHHHHHHHHcCCCcCCcCEEEEEeccCCCCCCc
Q 012253 22 CVLQEALEVHDGVSKGK--YTVGLGQDCM--AFCSEVEDV--ISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKS 95 (467)
Q Consensus 22 ~v~~~el~~~~g~~~~k--~~~Gig~r~~--av~~~~Ed~--~~ma~~Aa~~aL~~agi~~~~Id~Li~~Tes~~~~~ps 95 (467)
.|..++.++..++++.+ |..|.+...- .+ ..+.+. ......|++++++++|++++|||.+.+-++.+ .
T Consensus 250 il~S~e~A~~l~~~~~~~V~i~g~a~~~~~~~~-~~r~~~~~~~~~~~aa~~a~~~AGi~~~Did~~elydcF~-----~ 323 (498)
T PRK08257 250 LLTSVAKARRLGVPEDRWVYLHGGADAHDPYDI-LERPDLHRSPAIRAAGRRALALAGLGIDDIDAFDLYSCFP-----S 323 (498)
T ss_pred EEeeHHHHHhcCCCCCceEEEEEEEEeeCcccc-ccccccccChHHHHHHHHHHHHhCCCHHHCCEEEeccCCH-----H
Confidence 46777777777775544 2345544321 11 112222 22234699999999999999999998854432 3
Q ss_pred HHHHHHHHhcccCCCCeeEEeeCCc-----ChH---HHHHHHHHHHHHHhCCCCCCEEEEEE
Q 012253 96 IKTFLMQIFEKYGNTDIEGVDSTNA-----CYG---GTAALFNCVNWVESASWDGRYGLVVC 149 (467)
Q Consensus 96 ~a~~v~~~Lgl~G~~~~~~~di~~a-----C~g---g~~AL~~A~~~l~a~~~~~~~aLVV~ 149 (467)
.--.-.+.||+... +-..+.++.| -.+ ++.++--+...|+.. +++++||.+
T Consensus 324 ~~~~~~E~LGl~~~-g~~pvN~sGGl~s~G~P~~a~g~~~i~E~v~QLRg~--~~~~gLv~~ 382 (498)
T PRK08257 324 AVQVAARELGLDLD-DPRPLTVTGGLPFFGGPGNNYVTHAIAEMVERLRAN--PGRRGLVTA 382 (498)
T ss_pred HHHHHHHHcCcCCC-CCCCcCCCcChhhcCCchhhHHHHHHHHHHHHHhhc--CCCEEEEEC
Confidence 33455678887422 1123333222 222 344455455666654 447777754
|
|
| >cd00825 decarbox_cond_enzymes decarboxylating condensing enzymes; Family of enzymes that catalyze the formation of a new carbon-carbon bond by a decarboxylating Claisen-like condensation reaction | Back alignment and domain information |
|---|
Probab=83.12 E-value=9.5 Score=38.02 Aligned_cols=78 Identities=12% Similarity=-0.071 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHcCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHhcccCCCCeeEE----eeCC-cChHHHHHHHHHH
Q 012253 58 ISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGV----DSTN-ACYGGTAALFNCV 132 (467)
Q Consensus 58 ~~ma~~Aa~~aL~~agi~~~~Id~Li~~Tes~~~~~ps~a~~v~~~Lgl~G~~~~~~~----di~~-aC~gg~~AL~~A~ 132 (467)
.....++++++|+++|+.++|||.++..........+-....+...++. ..+... .+.| .++++...|..+.
T Consensus 204 ~~~~~~~i~~al~~agl~~~did~~~~h~~~~~~~~~~e~~~~~~~~~~---~~~~~~~~~~~~G~~~aas~~~~l~~~~ 280 (332)
T cd00825 204 AEGLARAAKEALAVAGLTVWDIDYLVAHGTGTPIGDVKELKLLRSEFGD---KSPAVSATKAMTGNLSSAAVVLAVDEAV 280 (332)
T ss_pred HHHHHHHHHHHHHHcCCCHhHCCEEEccCCCCCCCCHHHHHHHHHHhCC---CCceeECCCcccccchhHhHHHHHHHHH
Confidence 3455588999999999999999999975544332222223333333331 112222 3343 5666667777776
Q ss_pred HHHHhC
Q 012253 133 NWVESA 138 (467)
Q Consensus 133 ~~l~a~ 138 (467)
..++.+
T Consensus 281 ~~~~~~ 286 (332)
T cd00825 281 LMLEHG 286 (332)
T ss_pred HHHhcC
Confidence 666655
|
Members are involved in the synthesis of fatty acids and polyketides, a diverse group of natural products. Both pathways are an iterative series of additions of small carbon units, usually acetate, to a nascent acyl group. There are 2 classes of decarboxylating condensing enzymes, which can be distinguished by sequence similarity, type of active site residues and type of primer units (acetyl CoA or acyl carrier protein (ACP) linked units). |
| >PRK09258 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed | Back alignment and domain information |
|---|
Probab=82.90 E-value=4.8 Score=40.61 Aligned_cols=83 Identities=7% Similarity=0.025 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHHcCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHhcccCCCCee--EEeeCCcChH--HHHHHHHHHH
Q 012253 58 ISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIE--GVDSTNACYG--GTAALFNCVN 133 (467)
Q Consensus 58 ~~ma~~Aa~~aL~~agi~~~~Id~Li~~Tes~~~~~ps~a~~v~~~Lgl~G~~~~~--~~di~~aC~g--g~~AL~~A~~ 133 (467)
.....++.+++|+++|++++|||.+++.. ..+.+-..+.+.||+ +++-. .++--..|.+ -..+|..+
T Consensus 238 ~~~~~~~~~~~L~~~g~~~~did~~i~H~-----~~~~~~~~~~~~lgl--~~~k~~~~~~~~GN~~sas~~~~L~~~-- 308 (338)
T PRK09258 238 VELAVDTWEAFLAQLGWAVEQVDRVICHQ-----VGAAHTRAILKALGI--DPEKVFTTFPTLGNMGPASLPITLAMA-- 308 (338)
T ss_pred HHHHHHHHHHHHHHcCCCHHHCCEEecCC-----CCHHHHHHHHHHhCC--CHHHceehHhhhCCcHHhHHHHHHHHH--
Confidence 34555688899999999999999999853 244556688999998 33221 2221233443 33444333
Q ss_pred HHHhCC-CCCCEEEEEEe
Q 012253 134 WVESAS-WDGRYGLVVCT 150 (467)
Q Consensus 134 ~l~a~~-~~~~~aLVV~s 150 (467)
++.+. .+|+++|+++.
T Consensus 309 -~~~g~~~~Gd~vll~~~ 325 (338)
T PRK09258 309 -AEEGFLKPGDRVALLGI 325 (338)
T ss_pred -HHhCCCCCCCEEEEEEe
Confidence 44543 26788888764
|
|
| >PRK06954 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=82.18 E-value=7.6 Score=40.43 Aligned_cols=58 Identities=14% Similarity=0.224 Sum_probs=35.0
Q ss_pred eehhHHhhhhCCCcCeeEEeccceEeeccCCCCCHHHHHHHHHHHHHHHcCCCcCCcCEEEE
Q 012253 23 VLQEALEVHDGVSKGKYTVGLGQDCMAFCSEVEDVISMSLTVVTSLLEKYKIDPTQIGRLEV 84 (467)
Q Consensus 23 v~~~el~~~~g~~~~k~~~Gig~r~~av~~~~Ed~~~ma~~Aa~~aL~~agi~~~~Id~Li~ 84 (467)
|..++.++..|.+|-....|.+ .... .+ .+...-...|++++|+++|++|+|||.+.+
T Consensus 263 l~s~~~a~~~~~~p~~~i~g~~--~~~~-~~-~~~~~~~~~a~~~al~~agl~~~Did~~ei 320 (397)
T PRK06954 263 MMRASTAKRLGLAPLARVVGHS--TFAQ-AP-SKFTTAPVGAIRKLFEKNGWRAAEVDLFEI 320 (397)
T ss_pred EecHHHHHHCCCCceEEEEEEE--eccc-Cc-ccccchHHHHHHHHHHHcCCCHHHCCEEeh
Confidence 4455666666665542223322 1111 11 122234468999999999999999999964
|
|
| >PRK07910 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed | Back alignment and domain information |
|---|
Probab=81.23 E-value=9 Score=40.18 Aligned_cols=82 Identities=10% Similarity=0.069 Sum_probs=49.8
Q ss_pred eehhHHhhhhCCCcCeeEEeccceE--eeccCCCCCHHHHHHHHHHHHHHHcCCCcCCcCEEE-EEeccCCCCCCcHHHH
Q 012253 23 VLQEALEVHDGVSKGKYTVGLGQDC--MAFCSEVEDVISMSLTVVTSLLEKYKIDPTQIGRLE-VGSETVIDKSKSIKTF 99 (467)
Q Consensus 23 v~~~el~~~~g~~~~k~~~Gig~r~--~av~~~~Ed~~~ma~~Aa~~aL~~agi~~~~Id~Li-~~Tes~~~~~ps~a~~ 99 (467)
+..++.++.+|..+--...|.+... .++..++.+. .-..+|.+++|++++++|+|||.|. ++|.|+.. .+.-...
T Consensus 249 Le~~~~A~~rg~~i~a~i~g~~~~~dg~~~~~~~~~~-~~~~~a~~~Al~~agi~~~did~ie~hgtgt~~~-D~~E~~A 326 (418)
T PRK07910 249 IETEEHAKARGANILARIMGASITSDGFHMVAPDPNG-ERAGHAMTRAIELAGLTPGDIDHVNAHATGTSVG-DVAEGKA 326 (418)
T ss_pred EeeHHHHHhCCCcEEEEEEEEEEecCCCCCCCCCCCH-HHHHHHHHHHHHHhCCCHHHCCEEEcCCcCCCCC-CHHHHHH
Confidence 4445566666654321123433321 1111222222 2367899999999999999999998 56666542 4555678
Q ss_pred HHHHhcc
Q 012253 100 LMQIFEK 106 (467)
Q Consensus 100 v~~~Lgl 106 (467)
|++.||.
T Consensus 327 l~~~fg~ 333 (418)
T PRK07910 327 INNALGG 333 (418)
T ss_pred HHHHhCC
Confidence 8888874
|
|
| >PRK06840 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=81.23 E-value=6.9 Score=39.53 Aligned_cols=81 Identities=17% Similarity=0.141 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHcCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHhcccCCC-CeeEE-eeCC-cChHHHHHHHHHHHHHH
Q 012253 60 MSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNT-DIEGV-DSTN-ACYGGTAALFNCVNWVE 136 (467)
Q Consensus 60 ma~~Aa~~aL~~agi~~~~Id~Li~~Tes~~~~~ps~a~~v~~~Lgl~G~~-~~~~~-di~~-aC~gg~~AL~~A~~~l~ 136 (467)
...++.+++|+++|++++|||.+++.. ..+.+-..+++.||+ ++ +...+ ++.| +|++-..+|. .+++
T Consensus 238 ~~~~~i~~~L~~~gl~~~did~~~~h~-----~~~~~~~~~~~~Lgl--~~~~~~~~~~~Gn~~sas~~~~L~---~~~~ 307 (339)
T PRK06840 238 NFLKVIREALRKSGYTPKDIDYLAILH-----MKRSAHIALLEGLGL--TEEQAIYLDEYGHLGQLDQILSLH---LALE 307 (339)
T ss_pred HHHHHHHHHHHHcCCCHHHCCEEEECC-----cCHHHHHHHHHHcCC--CHHHeEeHHhccchhhhhHHHHHH---HHHH
Confidence 345788999999999999999988632 234444568899998 32 22222 2233 3333333443 4455
Q ss_pred hCC-CCCCEEEEEEe
Q 012253 137 SAS-WDGRYGLVVCT 150 (467)
Q Consensus 137 a~~-~~~~~aLVV~s 150 (467)
++. .+|.++|+++.
T Consensus 308 ~~~~~~Gd~ill~~~ 322 (339)
T PRK06840 308 QGKLKDGDLVVLVSA 322 (339)
T ss_pred cCCCCCCCEEEEEEE
Confidence 543 26788888774
|
|
| >COG3425 PksG 3-hydroxy-3-methylglutaryl CoA synthase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=80.57 E-value=4.1 Score=41.73 Aligned_cols=98 Identities=9% Similarity=-0.044 Sum_probs=64.6
Q ss_pred CCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHhcccC---CCCeeEE-eeCC-cChHHHHHHH
Q 012253 55 EDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYG---NTDIEGV-DSTN-ACYGGTAALF 129 (467)
Q Consensus 55 Ed~~~ma~~Aa~~aL~~agi~~~~Id~Li~~Tes~~~~~ps~a~~v~~~Lgl~G---~~~~~~~-di~~-aC~gg~~AL~ 129 (467)
+.-.....+|++.++++.|..|+|.|.++|.+-.+- . ...++..|+... .+..... .++| -|.+...+|.
T Consensus 205 ~~Y~~~~~~a~~~~~~k~gls~~dfdy~vfH~P~~k--~---~~ka~k~l~~~~e~v~~~l~~~~~vGN~YtgS~~L~La 279 (377)
T COG3425 205 PAYFKHVENAAKGYMEKTGLSPDDFDYIVFHQPNGK--F---PKKAAKSLGFKEEQVKPGLVYPQRIGNTYTGSLLLGLA 279 (377)
T ss_pred HHHHHHHHHHHHHHHHHhCCChhhhCeEEecCCCCc--h---HHHHHHHhCccHhhcCccchhhhhcCcccchhHHHHHH
Confidence 345677789999999999999999999999763332 2 334444444310 1333333 3555 6777777776
Q ss_pred HHHHHHHhCCCCCCEEEEEEeecccccCCCCCCccccceeEEEec
Q 012253 130 NCVNWVESASWDGRYGLVVCTDSAVYAEGPARPTGGAAAVAMLIG 174 (467)
Q Consensus 130 ~A~~~l~a~~~~~~~aLVV~sD~~~y~~~~~~~t~GdGAvA~Ll~ 174 (467)
...+... . +|+++|+++ +|.||++-..+
T Consensus 280 s~L~~a~--~-~G~rIl~~S--------------YGSGa~s~~fs 307 (377)
T COG3425 280 SLLDNAK--L-PGDRILLFS--------------YGSGAGSEAFS 307 (377)
T ss_pred HHHhhcC--C-CCCEEEEEe--------------eCCCcceeEEE
Confidence 6666554 2 678999876 67777776554
|
|
| >PRK04262 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=80.44 E-value=4.2 Score=41.36 Aligned_cols=82 Identities=13% Similarity=0.160 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHHHcCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHhcccCCC-Cee-EE---eeCC-cChHHHHHHHH
Q 012253 57 VISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNT-DIE-GV---DSTN-ACYGGTAALFN 130 (467)
Q Consensus 57 ~~~ma~~Aa~~aL~~agi~~~~Id~Li~~Tes~~~~~ps~a~~v~~~Lgl~G~~-~~~-~~---di~~-aC~gg~~AL~~ 130 (467)
......++.+++|+++|++++|||.+++.. ..+.+-..+++.||+ ++ ++. .+ +++| ++++-..+|..
T Consensus 207 ~~~~~~~~i~~~L~~~gl~~~dId~~v~Hq-----~n~~~~~~~~~~Lgl--~~ek~~~~~~~~~~GNt~sAsi~~~L~~ 279 (347)
T PRK04262 207 YFKHIISAAKGLMEKLGLKPSDYDYAVFHQ-----PNGKFPLRVAKMLGF--TKEQVKPGLLTPYIGNTYSGSALLGLAA 279 (347)
T ss_pred HHHHHHHHHHHHHHHhCcCHHHhceeecCC-----CchHHHHHHHHHcCC--CHHHhhccchhhhhCChHHHHHHHHHHH
Confidence 345677889999999999999999999852 233445567888887 32 222 11 3343 55555566655
Q ss_pred HHHHHHhCCCCCCEEEEEE
Q 012253 131 CVNWVESASWDGRYGLVVC 149 (467)
Q Consensus 131 A~~~l~a~~~~~~~aLVV~ 149 (467)
+.. +.. +|.++|+++
T Consensus 280 ~~~--~~~--~Gd~vll~~ 294 (347)
T PRK04262 280 VLD--VAK--PGDRILVVS 294 (347)
T ss_pred HHH--hCC--CCCEEEEEe
Confidence 544 222 678888776
|
|
| >PRK07515 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed | Back alignment and domain information |
|---|
Probab=80.14 E-value=3.9 Score=42.04 Aligned_cols=83 Identities=14% Similarity=0.227 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHHHcCCCcCCcCEEEEEeccCCCCCCcHHHHHHHH-hcccCCCCee---EE-eeCC-cChHHHHHHHH
Q 012253 57 VISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQI-FEKYGNTDIE---GV-DSTN-ACYGGTAALFN 130 (467)
Q Consensus 57 ~~~ma~~Aa~~aL~~agi~~~~Id~Li~~Tes~~~~~ps~a~~v~~~-Lgl~G~~~~~---~~-di~~-aC~gg~~AL~~ 130 (467)
+.+...++.+++|+++|++++|||.+++.-.+ +.+--.+.+. ||+ +.+.-. .+ +.+| +|++...+|..
T Consensus 269 ~~~~~~~~i~~~L~~~gl~~~dId~~~~Hq~~-----~~~~d~~~~~llg~-~~~~~~~~~~~~~~GNt~sasi~~~L~~ 342 (372)
T PRK07515 269 VCPMVAEHIVEHLAENGLTPADVKRFWLHQAN-----INMNQLIGKKVLGR-DATPEEAPVILDEYANTSSAGSIIAFHK 342 (372)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCCEEEECCCC-----HHHHHHHHHHhccC-CCChhhceEeHHhcCCchhhHHHHHHHH
Confidence 34456788999999999999999999974222 2222234444 664 112211 12 3333 66666667766
Q ss_pred HHHHHHhCCCCCCEEEEEE
Q 012253 131 CVNWVESASWDGRYGLVVC 149 (467)
Q Consensus 131 A~~~l~a~~~~~~~aLVV~ 149 (467)
+...+ .+|+++|+++
T Consensus 343 ~~~~~----~~Gd~vll~~ 357 (372)
T PRK07515 343 HSDDL----AAGDLGVICS 357 (372)
T ss_pred HhccC----CCCCEEEEEE
Confidence 54322 2678887776
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 467 | ||||
| 2f82_A | 450 | Hmg-Coa Synthase From Brassica Juncea In The Apo-Fo | 0.0 | ||
| 2fa3_A | 450 | Hmg-Coa Synthase From Brassica Juncea In Complex Wi | 0.0 | ||
| 2wya_A | 460 | Crystal Structure Of Human Mitochondrial 3-Hydroxy- | 1e-129 | ||
| 2p8u_A | 478 | Crystal Structure Of Human 3-Hydroxy-3-Methylglutar | 1e-126 | ||
| 1x9e_A | 383 | Crystal Structure Of Hmg-Coa Synthase From Enteroco | 3e-29 | ||
| 3v4x_A | 388 | The Biochemical And Structural Basis For Inhibition | 5e-29 | ||
| 2hdb_A | 383 | Hmg-coa Synthase From Enterococcus Faecalis. Mutati | 1e-28 | ||
| 1ysl_A | 402 | Crystal Structure Of Hmg-Coa Synthase From Enteroco | 6e-28 | ||
| 3v4n_A | 388 | The Biochemical And Structural Basis For Inhibition | 8e-28 | ||
| 1ysl_B | 384 | Crystal Structure Of Hmg-Coa Synthase From Enteroco | 8e-28 | ||
| 1xpk_C | 388 | Crystal Structure Of Staphylococcus Aureus Hmg-Coa | 4e-19 | ||
| 1xpl_B | 390 | Crystal Structure Of Staphylococcus Aureus Hmg-coa | 5e-18 | ||
| 1xpk_D | 388 | Crystal Structure Of Staphylococcus Aureus Hmg-Coa | 5e-18 | ||
| 1xpk_B | 388 | Crystal Structure Of Staphylococcus Aureus Hmg-Coa | 7e-18 | ||
| 1tvz_A | 388 | Crystal Structure Of 3-hydroxy-3-methylglutaryl-coe | 7e-18 | ||
| 3leh_A | 425 | The Crystal Structure Of Smu.943c From Streptococcu | 2e-17 | ||
| 3sqz_A | 389 | Crystal Structure Of Hmg_coa Synthase Complexed Wit | 2e-16 |
| >pdb|2F82|A Chain A, Hmg-Coa Synthase From Brassica Juncea In The Apo-Form Length = 450 | Back alignment and structure |
|
| >pdb|2FA3|A Chain A, Hmg-Coa Synthase From Brassica Juncea In Complex With Acetyl-Coa And Acetyl-Cys117 Length = 450 | Back alignment and structure |
|
| >pdb|2WYA|A Chain A, Crystal Structure Of Human Mitochondrial 3-Hydroxy-3- Methylglutaryl-Coenzyme A Synthase 2 (Hmgcs2) Length = 460 | Back alignment and structure |
|
| >pdb|2P8U|A Chain A, Crystal Structure Of Human 3-Hydroxy-3-Methylglutaryl Coa Synthase I Length = 478 | Back alignment and structure |
|
| >pdb|1X9E|A Chain A, Crystal Structure Of Hmg-Coa Synthase From Enterococcus Faecalis Length = 383 | Back alignment and structure |
|
| >pdb|3V4X|A Chain A, The Biochemical And Structural Basis For Inhibition Of Enterococcus Faecalis Hmg-Coa Synthase, Mvas, By Hymeglusin Length = 388 | Back alignment and structure |
|
| >pdb|2HDB|A Chain A, Hmg-coa Synthase From Enterococcus Faecalis. Mutation Alanine 110 To Glycine Length = 383 | Back alignment and structure |
|
| >pdb|1YSL|A Chain A, Crystal Structure Of Hmg-Coa Synthase From Enterococcus Faecalis With Acetoacetyl-Coa Ligand Length = 402 | Back alignment and structure |
|
| >pdb|3V4N|A Chain A, The Biochemical And Structural Basis For Inhibition Of Enterococcus Faecalis Hmg-coa Synthatse, Mvas, By Hymeglusin Length = 388 | Back alignment and structure |
|
| >pdb|1XPK|C Chain C, Crystal Structure Of Staphylococcus Aureus Hmg-Coa Synthase With Hmg- Coa And With Acetoacetyl-Coa And Acetylated Cysteine Length = 388 | Back alignment and structure |
|
| >pdb|1XPK|B Chain B, Crystal Structure Of Staphylococcus Aureus Hmg-Coa Synthase With Hmg- Coa And With Acetoacetyl-Coa And Acetylated Cysteine Length = 388 | Back alignment and structure |
|
| >pdb|1TVZ|A Chain A, Crystal Structure Of 3-hydroxy-3-methylglutaryl-coenzyme A Synthase From Staphylococcus Aureus Length = 388 | Back alignment and structure |
|
| >pdb|3LEH|A Chain A, The Crystal Structure Of Smu.943c From Streptococcus Mutans Ua159 Length = 425 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2f82_A HMG-COA synthase; HMGS1, transferase; 2.10A {Brassica juncea} PDB: 2f9a_A* 2fa0_A* 2fa3_A* Length = 450 | Back alignment and structure |
|---|
Score = 502 bits (1292), Expect = e-176
Identities = 372/449 (82%), Positives = 402/449 (89%), Gaps = 2/449 (0%)
Query: 7 KNVGILALDIYFPPTCVLQEALEVHDGVSKGKYTVGLGQDCMAFCSEVEDVISMSLTVVT 66
KNVGILA+DIYFPPTCV QEALE HDG SKGKYT+GLGQDC+AFC+E+EDVISMS VT
Sbjct: 2 KNVGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQDCLAFCTELEDVISMSFNAVT 61
Query: 67 SLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTA 126
SLLEKYKIDP QIGRLEVGSETVIDKSKSIKTFLMQ+FEK GNTD+EGVDSTNACYGGTA
Sbjct: 62 SLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQLFEKCGNTDVEGVDSTNACYGGTA 121
Query: 127 ALFNCVNWVESASWDGRYGLVVCTDSAVYAEGPARPTGGAAAVAMLIGPDAPIAFESKLR 186
AL NCVNWVES SWDGRYGLV+CTDSAVYAEGPARPTGGAAA+AMLIGPDAPI FESKLR
Sbjct: 122 ALLNCVNWVESNSWDGRYGLVICTDSAVYAEGPARPTGGAAAIAMLIGPDAPIVFESKLR 181
Query: 187 GSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKYFCQKFEKLEGRQFSMLDVD 246
GSHM+H YDFYKPNLASEYPVVDGKLSQTCYLMALDSCYK+ C KFEKLEG++FS+ D D
Sbjct: 182 GSHMAHVYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKHLCNKFEKLEGKEFSINDAD 241
Query: 247 YFVFHSPYNKLVQKSFARLFFNDFLRNASSVDEIAKEKLAPYSTLSDVESYQSRDLEKAS 306
YFVFHSPYNKLVQKSFARL +NDFLRNASS+DE AKEK PYS+LS ESYQSRDLEK S
Sbjct: 242 YFVFHSPYNKLVQKSFARLLYNDFLRNASSIDEAAKEKFTPYSSLSLDESYQSRDLEKVS 301
Query: 307 QQVAKQLYDLKVQPSTLIPKQVGNMYTASLYAAFASLLHEKHSSLEGKRVIMFSYGSGLT 366
QQ+AK YD KVQP+TL+PKQVGNMYTASLYAAFASL+H KHS L GKRV+MFSYGSG T
Sbjct: 302 QQLAKTYYDAKVQPTTLVPKQVGNMYTASLYAAFASLVHNKHSDLAGKRVVMFSYGSGST 361
Query: 367 ATMFSLQLQEGHRPFSLSNIVKVMDVPGKLKLRHEFPPEKFVDIMKLMEHRYGAKDFVTS 426
ATMFSL+L E PFSLSNI VMDV GKLK RHE+ PEKFV+ MKLMEHRYGAK+FVTS
Sbjct: 362 ATMFSLRLCENQSPFSLSNIASVMDVGGKLKARHEYAPEKFVETMKLMEHRYGAKEFVTS 421
Query: 427 KDSSL--LSPGTCYLTEVDSMFRRFYAKK 453
K+ L L+PGT YL EVDS++RRFY KK
Sbjct: 422 KEGILDLLAPGTYYLKEVDSLYRRFYGKK 450
|
| >2p8u_A Hydroxymethylglutaryl-COA synthase, cytoplasmic; hydromethylglutaryl COA, mevalonate pathway, structural GENO structural genomics consortium, SGC; HET: COA; 2.00A {Homo sapiens} Length = 478 | Back alignment and structure |
|---|
Score = 475 bits (1222), Expect = e-165
Identities = 225/456 (49%), Positives = 300/456 (65%), Gaps = 8/456 (1%)
Query: 6 PKNVGILALDIYFPPTCVLQEALEVHDGVSKGKYTVGLGQDCMAFCSEVEDVISMSLTVV 65
+VGI+AL+IYFP V Q LE +DGV GKYT+GLGQ M FC++ ED+ S+ +TVV
Sbjct: 22 SMDVGIVALEIYFPSQYVDQAELEKYDGVDAGKYTIGLGQAKMGFCTDREDINSLCMTVV 81
Query: 66 TSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGT 125
+L+E+ + IGRLEVG+ET+IDKSKS+KT LMQ+FE+ GNTDIEG+D+TNACYGGT
Sbjct: 82 QNLMERNNLSYDCIGRLEVGTETIIDKSKSVKTNLMQLFEESGNTDIEGIDTTNACYGGT 141
Query: 126 AALFNCVNWVESASWDGRYGLVVCTDSAVYAEGPARPTGGAAAVAMLIGPDAPIAFESKL 185
AA+FN VNW+ES+SWDGRY LVV D AVYA G ARPTGG AVA+LIGP+AP+ FE L
Sbjct: 142 AAVFNAVNWIESSSWDGRYALVVAGDIAVYATGNARPTGGVGAVALLIGPNAPLIFERGL 201
Query: 186 RGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKYFCQKFEK-----LEGRQF 240
RG+HM HAYDFYKP++ SEYP+VDGKLS CYL ALD CY +C+K + F
Sbjct: 202 RGTHMQHAYDFYKPDMLSEYPIVDGKLSIQCYLSALDRCYSVYCKKIHAQWQKEGNDKDF 261
Query: 241 SMLDVDYFVFHSPYNKLVQKSFARLFFNDFLRNASSVDEIAKEKLAPYSTLSDVESYQSR 300
++ D + +FHSPY KLVQKS AR+ NDFL + + L + + ++Y R
Sbjct: 262 TLNDFGFMIFHSPYCKLVQKSLARMLLNDFLNDQNRDKNSIYSGLEAFGDVKLEDTYFDR 321
Query: 301 DLEKASQQVAKQLYDLKVQPSTLIPKQVGNMYTASLYAAFASLL-HEKHSSLEGKRVIMF 359
D+EKA + + +L+ K + S L+ Q GNMYT+S+Y + AS+L L GKR+ +F
Sbjct: 322 DVEKAFMKASSELFSQKTKASLLVSNQNGNMYTSSVYGSLASVLAQYSPQQLAGKRIGVF 381
Query: 360 SYGSGLTATMFSLQLQEGHRPFSLSN--IVKVMDVPGKLKLRHEFPPEKFVDIMKLMEHR 417
SYGSGL AT++SL++ + P S + + D+ +L R P+ F + MKL E
Sbjct: 382 SYGSGLAATLYSLKVTQDATPGSALDKITASLCDLKSRLDSRTGVAPDVFAENMKLREDT 441
Query: 418 YGAKDFVTSKDSSLLSPGTCYLTEVDSMFRRFYAKK 453
+ +++ L GT YL VD RR YA++
Sbjct: 442 HHLVNYIPQGSIDSLFEGTWYLVRVDEKHRRTYARR 477
|
| >1xpm_A 3-hydroxy-3-methylglutaryl COA synthase; HMG-COA synthase, HMGS, coenzyme A, thiolase fold, condensing enzyme; HET: HMG CAA; 1.60A {Staphylococcus aureus subsp} SCOP: c.95.1.2 c.95.1.2 PDB: 1xpl_A* 1xpk_A* 1tvz_A 1txt_A* Length = 396 | Back alignment and structure |
|---|
Score = 409 bits (1053), Expect = e-141
Identities = 97/453 (21%), Positives = 180/453 (39%), Gaps = 61/453 (13%)
Query: 8 NVGILALDIYFPPTCVLQEALEVHDGVSKGKYTVGLGQDCMAFCSEVEDVISMSLTVVTS 67
+GI ++ Y P V L V K+ +G+GQ MA +D++SM
Sbjct: 2 AIGIDKINFYVPKYYVDMAKLAEARQVDPNKFLIGIGQTEMAVSPVNQDIVSMGANAAKD 61
Query: 68 LLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAA 127
++ D +IG + V +E+ +D +K+ + + + ACY T A
Sbjct: 62 IIT--DEDKKKIGMVIVATESAVDAAKAAAVQIHNLLG--IQPFARCFEMKEACYAATPA 117
Query: 128 LFNCVNWVESASWDGRYGLVVCTDSAVYAEG-PARPTGGAAAVAMLIGPDAPIAFESKLR 186
+ +++ + LV+ TD+A Y PT GA AVAM+I + I ++
Sbjct: 118 IQLAKDYLA--TRPNEKVLVIATDTARYGLNSGGEPTQGAGAVAMVIAHNPSILALNEDA 175
Query: 187 GSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKYFCQKFEKLEGRQFSMLDVD 246
++ YDF++P +YP+VDG LS+ Y+ + + + ++ +G+ + D
Sbjct: 176 VAYTEDVYDFWRPT-GHKYPLVDGALSKDAYIRSFQQSWNEYAKR----QGKSLA--DFA 228
Query: 247 YFVFHSPYNKLVQKSFARLFFNDFLRNASSVDEIAKEKLAPYSTLSDVESYQSRDLEKAS 306
FH P+ K+ +K+ + N
Sbjct: 229 SLCFHVPFTKMGKKALESIIDNAD------------------------------------ 252
Query: 307 QQVAKQLYDLKVQPSTLIPKQVGNMYTASLYAAFASLLHEKHSSLEGKRVIMFSYGSGLT 366
+ ++ + + + VGN+YT SLY + SLL E G+ + +FSYGSG
Sbjct: 253 -ETTQERLRSGYEDAVDYNRYVGNIYTGSLYLSLISLL-ENRDLQAGETIGLFSYGSGSV 310
Query: 367 ATMFSLQLQEGHRPFSLSNIVKVMDVPGKLKLRHEFPPEKFVDIMKLMEHRYGAKDFVTS 426
+S L EG++ + + L R E + + K R+ +F
Sbjct: 311 GEFYSATLVEGYK-----DHLDQAAHKALLNNRTEVSVDAYETFFK----RFDDVEFDEE 361
Query: 427 KDSSLLSPGTCYLTEVDSMFRRFYAKKENTSNA 459
+D+ YL+ +++ R ++ + +
Sbjct: 362 QDAVHEDRHIFYLSNIENNVREYHRPELEHHHH 394
|
| >3v4n_A HMG-COA synthase; hydroxymethylglutaryl-COA synthase, nitrosylation, transfera inhibitor complex; HET: BTB; 1.60A {Enterococcus faecalis} PDB: 3v4x_A* 1x9e_A 1ysl_B* 1ysl_A* 2hdb_A* Length = 388 | Back alignment and structure |
|---|
Score = 375 bits (963), Expect = e-127
Identities = 105/446 (23%), Positives = 173/446 (38%), Gaps = 64/446 (14%)
Query: 6 PKNVGILALDIYFPPTCVLQEALEVHDGVSKGKYTVGLGQDCMAFCSEVEDVISMSLTVV 65
+GI + + PP + AL V GK+ +G+GQD MA +D+++ +
Sbjct: 5 SMTIGIDKISFFVPPYYIDMTALAEARNVDPGKFHIGIGQDQMAVNPISQDIVTFAANAA 64
Query: 66 TSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGT 125
++L K + I + VG+E+ ID+SK+ L ++ + A YG T
Sbjct: 65 EAILTKEDKEA--IDMVIVGTESSIDESKAAAVVLHRLMG--IQPFARSFEIKEAXYGAT 120
Query: 126 AALFNCVNWVESASWDGRYGLVVCTDSAVYAEG-PARPTGGAAAVAMLIGPDAPIAFESK 184
A L N V A + LVV D A Y PT GA AVAML+ + I +
Sbjct: 121 AGLQLAKNHV--ALHPDKKVLVVAADIAKYGLNSGGEPTQGAGAVAMLVSSEPRILALKE 178
Query: 185 LRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKYFCQKFEKLEGRQFSMLD 244
YDF++P YP+VDG LS Y+ + + ++ G F+ D
Sbjct: 179 DNVMLTQDIYDFWRPT-GHPYPMVDGPLSNETYIQSFAQVWDEHKKRT----GLDFA--D 231
Query: 245 VDYFVFHSPYNKLVQKSFARLFFNDFLRNASSVDEIAKEKLAPYSTLSDVESYQSRDLEK 304
D FH PY K+ +K+ +
Sbjct: 232 YDALAFHIPYTKMGKKALLAKISDQT---------------------------------- 257
Query: 305 ASQQVAKQLYDLKVQPSTLIPKQVGNMYTASLYAAFASLLHEKHSSLEGKRVIMFSYGSG 364
+ ++ + + S + ++VGN+YT SLY SLL + G ++ +FSYGSG
Sbjct: 258 ---EAEQERILARYEESIIYSRRVGNLYTGSLYLGLISLLENATTLTAGNQIGLFSYGSG 314
Query: 365 LTATMFSLQLQEGHRPFSLSNIVKVMDVPGKLKLRHEFPPEKFVDIMKLMEHRYGAKDFV 424
A F+ +L G N ++ L R E ++ + +
Sbjct: 315 AVAEFFTGELVAG-----YQNHLQKETHLALLDNRTELSIAEYEAMFA--------ETLD 361
Query: 425 TSKDSSLLSPGTCYLTEVDSMFRRFY 450
T D +L ++ +++ R +
Sbjct: 362 TDIDQTLEDELKYSISAINNTVRSYR 387
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 44.8 bits (105), Expect = 6e-05
Identities = 79/479 (16%), Positives = 152/479 (31%), Gaps = 126/479 (26%)
Query: 7 KNVGILALDIYFPPTCVLQEALEVHDGVSKGKYTVGLGQDCMAFCSEVEDVISMSLTVVT 66
K +ALD V +V + + + L C+ E V+ M +
Sbjct: 163 KTW--VALD-------VCLS-YKVQCKMDFKIFWLNLKN-----CNSPETVLEM----LQ 203
Query: 67 SLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIF--EKYGNT-DIEGVDSTNACYG 123
LL Y+IDP R + S + + SI+ L ++ + Y N + + N
Sbjct: 204 KLL--YQIDPNWTSRSD-HSSNIKLRIHSIQAELRRLLKSKPYENCLLV--LL--NVQNA 256
Query: 124 GTAALFN--C--------VNWVESASWDGRYGLVVCTDSAVYAEGPAR---------PTG 164
FN C + S + + S +
Sbjct: 257 KAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQ 316
Query: 165 GAAAVAMLIGPDAPIA-FESKLRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDS 223
+ P ++ +R +D +K + D KL+ ++S
Sbjct: 317 DLPREVLTTNPRR-LSIIAESIR--DGLATWDNWK------HVNCD-KLTTI-----IES 361
Query: 224 CYKYFCQKFEKLEGRQ-FSMLDVDYFVFHSPYN-KLVQKSFARLFFN----------DFL 271
E E R+ F L VF P + + + ++F+ + L
Sbjct: 362 SLNV----LEPAEYRKMFDRL----SVF--PPSAHIPTILLSLIWFDVIKSDVMVVVNKL 411
Query: 272 RNASSVDEIAKEKLAPYSTLSDVESYQSRDLEKASQQVA--KQL---YDL--KVQPSTLI 324
S V++ KE ST+S + S K + A + + Y++ LI
Sbjct: 412 HKYSLVEKQPKE-----STIS-IPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLI 465
Query: 325 PKQVGNMYTASLYAAFASLLHEKHSSLEGK----RVIMFSYGSGLTATMFSLQLQEGHRP 380
P + Y S + H K+ + R++ + F L+ + H
Sbjct: 466 PPYLDQ-YFYS-HIGH----HLKNIEHPERMTLFRMVFLDFR-------F-LEQKIRHDS 511
Query: 381 FSLSNIVKVMDVPGKLKL------RHEFPPEKFV-DIMKLMEHRYGAKDFVTSKDSSLL 432
+ + +++ +LK ++ E+ V I+ + + + + SK + LL
Sbjct: 512 TAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFL-PKIEE-NLICSKYTDLL 568
|
| >3v7i_A Putative polyketide synthase; type III polyketide synthase, acyltransferase, transferase,; 2.90A {Streptomyces coelicolor} Length = 413 | Back alignment and structure |
|---|
Score = 43.0 bits (101), Expect = 2e-04
Identities = 43/341 (12%), Positives = 77/341 (22%), Gaps = 84/341 (24%)
Query: 54 VEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYG-NTDI 112
E V + L+ +D + L + T + + + + D
Sbjct: 134 WEAVQAYGERAARGALQIAGLDVADVDCLITSNSTTPA----LPGLDVALANRLPLRGDT 189
Query: 113 EGVDSTN-ACYGGTAALFNCVNWVESASWDGRYGLVVCT-----------DSAVYAEGPA 160
+ +T AC GT +L + V + R LVV + D+
Sbjct: 190 MLLPATQWACVAGTRSLALAADLVAADP--DRVVLVVISEALSTTYQPADDTLESLIVRL 247
Query: 161 RPTGGAAAVAMLIGPDAPIAFESKLRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMA 220
A A + P H L + +
Sbjct: 248 LFADTAVAAVVTGRPRPESVLRLDAAWHHT----------LPGTRDLHRLETRADGTHFV 297
Query: 221 LD--------SCYKYFCQKFEKLEGRQFSMLDVDYFVFHSPYNKLVQKSFARLFFNDFLR 272
+D + S D + H P V
Sbjct: 298 MDRRGPRAVQETVTAMWEWLRVRYEDDPSSWHPDVLLAH-PGGTRV-------------- 342
Query: 273 NASSVDEIAKEKLAPYSTLSDVESYQSRDLEKASQQVAKQLYDLKVQPSTLIPKQVGNMY 332
L +E + ++ Y GN
Sbjct: 343 ------------------LEYMEQTMPDEWPSGLLSYSRDSYT------------SGNRG 372
Query: 333 TASLYAAFASLLHEKHSSLEGKRVIMFSYGSGLTATMFSLQ 373
A+++ G R ++++ GLTAT +
Sbjct: 373 GAAVFDILRRAHDA--GQKTGSRAVLYAAAPGLTATALEGE 411
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 467 | |||
| 2v4w_A | 460 | Hydroxymethylglutaryl-COA synthase, mitochondrial; | 100.0 | |
| 2wya_A | 460 | Hydroxymethylglutaryl-COA synthase, mitochondrial; | 100.0 | |
| 2p8u_A | 478 | Hydroxymethylglutaryl-COA synthase, cytoplasmic; h | 100.0 | |
| 2f82_A | 450 | HMG-COA synthase; HMGS1, transferase; 2.10A {Brass | 100.0 | |
| 3v4n_A | 388 | HMG-COA synthase; hydroxymethylglutaryl-COA syntha | 100.0 | |
| 3sqz_A | 425 | Putative hydroxymethylglutaryl-COA synthase; thiol | 100.0 | |
| 1xpm_A | 396 | 3-hydroxy-3-methylglutaryl COA synthase; HMG-COA s | 100.0 | |
| 4ewp_A | 350 | 3-oxoacyl-[acyl-carrier-protein] synthase 3; trans | 100.0 | |
| 3il3_A | 323 | 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, | 100.0 | |
| 4efi_A | 354 | 3-oxoacyl-(acyl-carrier protein) synthase; structu | 100.0 | |
| 3gwa_A | 365 | 3-oxoacyl-(acyl-carrier-protein) synthase III; str | 100.0 | |
| 4dfe_A | 333 | 3-oxoacyl-[acyl-carrier-protein] synthase 3; ssgci | 100.0 | |
| 3h78_A | 359 | PQS biosynthetic enzyme; PQSD, anthranilic acid, a | 100.0 | |
| 3s21_A | 345 | 3-oxoacyl-[ACP] synthase III; non-decarboxylative | 100.0 | |
| 3il6_A | 321 | 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, | 100.0 | |
| 3s3l_A | 357 | CERJ; acyltransferase, FABH homologue, KS III homo | 100.0 | |
| 3led_A | 392 | 3-oxoacyl-acyl carrier protein synthase III; struc | 100.0 | |
| 1hnj_A | 317 | Beta-ketoacyl-acyl carrier protein synthase III; F | 100.0 | |
| 3euo_A | 379 | Type III pentaketide synthase; alpha helix, acyltr | 100.0 | |
| 2x3e_A | 331 | 3-oxoacyl-[acyl-carrier-protein] synthase 3; HED, | 100.0 | |
| 1mzj_A | 339 | Beta-ketoacylsynthase III; beta-ketosynthase, arom | 100.0 | |
| 3e1h_A | 465 | PKSIIINC, putative uncharacterized protein; resorc | 100.0 | |
| 3ov2_A | 393 | Curcumin synthase; type III polyketide synthase, t | 100.0 | |
| 1ted_A | 393 | PKS18; thiolase fold, substrate binding tunnel, tr | 100.0 | |
| 2ebd_A | 309 | 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, | 100.0 | |
| 1zow_A | 313 | 3-oxoacyl-[acyl-carrier-protein] synthase III; FAB | 100.0 | |
| 1u6e_A | 335 | 3-oxoacyl-[acyl-carrier-protein] synthase III; tra | 100.0 | |
| 2p0u_A | 413 | Stilbenecarboxylate synthase 2; polyketide synthas | 100.0 | |
| 1u0m_A | 382 | Putative polyketide synthase; type III polyketide | 100.0 | |
| 2d3m_A | 406 | Pentaketide chromone synthase; chalcone synthase, | 100.0 | |
| 3oit_A | 387 | OS07G0271500 protein; type III polyketide synthase | 100.0 | |
| 1i88_A | 389 | CHS2, chalcone synthase 2; polyketide synthase, tr | 100.0 | |
| 2h84_A | 374 | Steely1; thiolase-fold, type III polyketide syntha | 100.0 | |
| 1ee0_A | 402 | 2-pyrone synthase; polyketide synthase, thiolase f | 100.0 | |
| 1ub7_A | 322 | 3-oxoacyl-[acyl-carrier protein] synthase; fatty a | 100.0 | |
| 3v7i_A | 413 | Putative polyketide synthase; type III polyketide | 100.0 | |
| 3awk_A | 402 | Chalcone synthase-like polyketide synthase; type I | 100.0 | |
| 3a5r_A | 387 | Benzalacetone synthase; chalcone synthase, type II | 100.0 | |
| 1xes_A | 413 | Dihydropinosylvin synthase; native structure, tran | 100.0 | |
| 3tsy_A | 979 | Fusion protein 4-coumarate--COA ligase 1, resvera | 100.0 | |
| 3lma_A | 347 | Stage V sporulation protein AD (spovad); NESG, str | 99.9 | |
| 4e1l_A | 395 | Acetoacetyl-COA thiolase 2; 3-layer(ABA) sandwich, | 99.71 | |
| 3ss6_A | 394 | Acetyl-COA acetyltransferase; structural genomics, | 99.7 | |
| 4dd5_A | 396 | Acetyl-COA acetyltransferase; structural genomics, | 99.69 | |
| 3o04_A | 413 | LMO2201 protein, beta-keto-acyl carrier protein sy | 99.67 | |
| 2iik_A | 418 | 3-ketoacyl-COA thiolase, peroxisomal; fatty acid m | 99.66 | |
| 1ox0_A | 430 | Beta ketoacyl-acyl carrier protein synthase; trans | 99.63 | |
| 1tqy_A | 424 | Beta-ketoacyl synthase/acyl transferase; alpha-bet | 99.63 | |
| 2gqd_A | 437 | 3-oxoacyl-[acyl-carrier-protein] synthase 2; dupli | 99.61 | |
| 1e5m_A | 416 | KAS II, beta ketoacyl acyl carrier protein synthas | 99.61 | |
| 3goa_A | 387 | 3-ketoacyl-COA thiolase; metabolism, fatty acid, p | 99.58 | |
| 3svk_A | 407 | Acetyl-COA acetyltransferase; ssgcid, NIH, niaid, | 99.58 | |
| 2vu1_A | 392 | Acetyl-COA acetyltransferase; acyltransferase, PHB | 99.55 | |
| 3ho9_A | 427 | 3-oxoacyl-[acyl-carrier-protein] synthase 2; FABF, | 99.54 | |
| 1ulq_A | 401 | Putative acetyl-COA acetyltransferase; structural | 99.54 | |
| 1wl4_A | 397 | Acetyl-coenzyme A acetyltransferase 2; thiolase fo | 99.54 | |
| 1j3n_A | 408 | 3-oxoacyl-(acyl-carrier protein) synthase II; cond | 99.52 | |
| 2ib8_A | 395 | Acetyl-COA acetyltransferase; thiolase fold, potas | 99.51 | |
| 4ewg_A | 412 | Beta-ketoacyl synthase; ssgcid, structural genomic | 99.51 | |
| 2iwz_A | 438 | 3-oxoacyl-[acyl-carrier-protein] synthase; mitocho | 99.51 | |
| 3kzu_A | 428 | 3-oxoacyl-(acyl-carrier-protein) synthase II; seat | 99.49 | |
| 4ddo_A | 451 | 3-oxoacyl-[acyl-carrier-protein] synthase 2; ssgci | 99.49 | |
| 1afw_A | 393 | 3-ketoacetyl-COA thiolase; fatty acid metabolism; | 99.49 | |
| 2wu9_A | 442 | 3-ketoacyl-COA thiolase 2, peroxisomal; cysteine o | 99.48 | |
| 1wdk_C | 390 | 3-ketoacyl-COA thiolase; alpha2BETA2 heterotetrame | 99.48 | |
| 2ix4_A | 431 | 3-oxoacyl-[acyl-carrier-protein] synthase; beta-ke | 99.48 | |
| 1tqy_B | 415 | Actinorhodin polyketide putative beta-ketoacyl SY; | 99.47 | |
| 2gp6_A | 434 | 3-oxoacyl-[acyl-carrier-protein] synthase 2; thiol | 99.45 | |
| 3mqd_A | 428 | Beta-ketoacyl synthase; ssgcid, ALS collaborative | 99.44 | |
| 2wge_A | 416 | 3-oxoacyl-[acyl-carrier-protein] synthase 1; beta | 99.42 | |
| 2qo3_A | 915 | Eryaii erythromycin polyketide synthase modules 3; | 99.33 | |
| 2hg4_A | 917 | DEBS, 6-deoxyerythronolide B synthase; ketosynthas | 99.3 | |
| 2vba_A | 406 | 3-oxoacyl-[acyl-carrier-protein] synthase 1; cytop | 99.27 | |
| 3hhd_A | 965 | Fatty acid synthase; transferase, multienzyme, meg | 99.19 | |
| 4egv_A | 520 | Acetyl-COA acetyltransferase; NEW SUB-family, thio | 98.91 | |
| 3zen_D | 3089 | Fatty acid synthase; transferase, mycolic acid bio | 98.78 | |
| 2pff_A | 1688 | Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl | 98.2 | |
| 2vz8_A | 2512 | Fatty acid synthase; transferase, phosphopantethei | 97.93 | |
| 2uv8_A | 1887 | Fatty acid synthase subunit alpha (FAS2); fatty ac | 97.71 | |
| 2uv9_A | 1878 | Fatty acid synthase alpha subunits; fungal, dehydr | 97.59 | |
| 2vu1_A | 392 | Acetyl-COA acetyltransferase; acyltransferase, PHB | 91.91 | |
| 3svk_A | 407 | Acetyl-COA acetyltransferase; ssgcid, NIH, niaid, | 91.25 | |
| 4dd5_A | 396 | Acetyl-COA acetyltransferase; structural genomics, | 91.15 | |
| 4e1l_A | 395 | Acetoacetyl-COA thiolase 2; 3-layer(ABA) sandwich, | 91.13 | |
| 3lma_A | 347 | Stage V sporulation protein AD (spovad); NESG, str | 90.95 | |
| 1ulq_A | 401 | Putative acetyl-COA acetyltransferase; structural | 90.44 | |
| 1wl4_A | 397 | Acetyl-coenzyme A acetyltransferase 2; thiolase fo | 90.09 | |
| 3goa_A | 387 | 3-ketoacyl-COA thiolase; metabolism, fatty acid, p | 89.81 | |
| 3ss6_A | 394 | Acetyl-COA acetyltransferase; structural genomics, | 88.87 | |
| 1wdk_C | 390 | 3-ketoacyl-COA thiolase; alpha2BETA2 heterotetrame | 88.06 | |
| 4egv_A | 520 | Acetyl-COA acetyltransferase; NEW SUB-family, thio | 85.54 | |
| 1u6e_A | 335 | 3-oxoacyl-[acyl-carrier-protein] synthase III; tra | 84.59 | |
| 2ib8_A | 395 | Acetyl-COA acetyltransferase; thiolase fold, potas | 84.59 | |
| 3s3l_A | 357 | CERJ; acyltransferase, FABH homologue, KS III homo | 84.44 | |
| 2x3e_A | 331 | 3-oxoacyl-[acyl-carrier-protein] synthase 3; HED, | 83.63 | |
| 4ewp_A | 350 | 3-oxoacyl-[acyl-carrier-protein] synthase 3; trans | 82.98 | |
| 1mzj_A | 339 | Beta-ketoacylsynthase III; beta-ketosynthase, arom | 82.53 | |
| 2iik_A | 418 | 3-ketoacyl-COA thiolase, peroxisomal; fatty acid m | 82.09 | |
| 3gwa_A | 365 | 3-oxoacyl-(acyl-carrier-protein) synthase III; str | 81.54 | |
| 3il3_A | 323 | 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, | 81.3 | |
| 3s21_A | 345 | 3-oxoacyl-[ACP] synthase III; non-decarboxylative | 81.01 | |
| 2wu9_A | 442 | 3-ketoacyl-COA thiolase 2, peroxisomal; cysteine o | 80.84 | |
| 2ebd_A | 309 | 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, | 80.72 | |
| 4dfe_A | 333 | 3-oxoacyl-[acyl-carrier-protein] synthase 3; ssgci | 80.24 | |
| 1zow_A | 313 | 3-oxoacyl-[acyl-carrier-protein] synthase III; FAB | 80.23 | |
| 4efi_A | 354 | 3-oxoacyl-(acyl-carrier protein) synthase; structu | 80.03 |
| >2wya_A Hydroxymethylglutaryl-COA synthase, mitochondrial; steroid biosynthesis, cholesterol biosynthesis, mitochondrion, phosphoprotein; HET: HMG; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-86 Score=697.03 Aligned_cols=449 Identities=51% Similarity=0.877 Sum_probs=410.4
Q ss_pred CceeEEeEEEEecCCceeehhHHhhhhCCCcCeeEEeccceEeeccCCCCCHHHHHHHHHHHHHHHcCCCcCCcCEEEEE
Q 012253 6 PKNVGILALDIYFPPTCVLQEALEVHDGVSKGKYTVGLGQDCMAFCSEVEDVISMSLTVVTSLLEKYKIDPTQIGRLEVG 85 (467)
Q Consensus 6 ~~~vgI~ai~~y~P~~~v~~~el~~~~g~~~~k~~~Gig~r~~av~~~~Ed~~~ma~~Aa~~aL~~agi~~~~Id~Li~~ 85 (467)
|++|||.++++|+|+++|+++||++.+|++++||++|+|+++++|++++|++++||++|+++||+++|++|++||+|||+
T Consensus 3 ~~~VgI~~~g~y~P~~~v~~~~l~~~~~~~~~~i~~~~Gi~~r~~~~~~E~~~~ma~~Aa~~al~~a~i~~~~Id~ii~a 82 (460)
T 2wya_A 3 PKDVGILALEVYFPAQYVDQTDLEKYNNVEAGKYTVGLGQTRMGFCSVQEDINSLCLTVVQRLMERIQLPWDSVGRLEVG 82 (460)
T ss_dssp CSSCEEEEEEEECCSEEEEHHHHHHHTTCCTTCCCCCCCCCEEECCCTTCCHHHHHHHHHHHHHHHHTCCGGGEEEEEEE
T ss_pred CCceEEEEEEEECCCeEEcHHHHHHHhCCCHHHHHHhhCcEEEEECCCCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEE
Confidence 58899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCCCCCCcHHHHHHHHhcccCCCCeeEEeeCCcChHHHHHHHHHHHHHHhCCCCCCEEEEEEeecccccCCCCCCccc
Q 012253 86 SETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDSAVYAEGPARPTGG 165 (467)
Q Consensus 86 Tes~~~~~ps~a~~v~~~Lgl~G~~~~~~~di~~aC~gg~~AL~~A~~~l~a~~~~~~~aLVV~sD~~~y~~~~~~~t~G 165 (467)
|+|+++.+|+++++||++||+.|+++|.+||+++||+||++||++|.+||++|.++++.++|+++|+..|.+++.++|||
T Consensus 83 T~t~~~~~ps~a~~v~~~l~~~g~~~~~a~D~~~aC~g~~~al~~A~~~i~~g~~~~~lvvv~~s~~~~~~d~~~~~~~G 162 (460)
T 2wya_A 83 TETIIDKSKAVKTVLMELFQDSGNTDIEGIDTTNACYGGTASLFNAANWMESSSWDGRYAMVVCGDIAVYPSGNARPTGG 162 (460)
T ss_dssp CSCCSCSSSCHHHHHGGGTGGGTCCCCBCCEEESGGGHHHHHHHHHHHHHTSTTCCSCEEEEEEEEEECCCSSTTGGGCE
T ss_pred eCCCCCCCCchHHHHHHHHhccCCCCeeEechhhhhhhHHHHHHHHHHHHHhccccceEEEEEeccccccccccccccCc
Confidence 99999999999999999999878899999999999999999999999999999876678899999999999999999999
Q ss_pred cceeEEEecCCCCceeecccccccccCcccccccCCCCCCceecCcchHHHHHHHHHHHHHHHHHHHHh-----hhcCCC
Q 012253 166 AAAVAMLIGPDAPIAFESKLRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKYFCQKFEK-----LEGRQF 240 (467)
Q Consensus 166 dGAvA~Ll~~~~~~~~~~~~~~~~~~~~~df~~p~~~~~~~~vdG~~s~~~y~~a~~~~~~~~~~~~~~-----~~~~~~ 240 (467)
|||+|||+++++++.+..+..++++.+.+|||+|..++++|.+||+++..+|....+.+|+.+.+++.. +++.++
T Consensus 163 dGA~A~l~~~~~~~~~~~~~~~~~~~~~~df~~p~~~s~~~~~dg~~s~~~~~~~g~~v~~~~~~~~~~~~~~~l~~~~~ 242 (460)
T 2wya_A 163 AGAVAMLIGPKAPLALERGLRGTHMENVYDFYKPNLASEYPIVDGKLSIQCYLRALDRCYTSYRKKIQNQWKQAGSDRPF 242 (460)
T ss_dssp EEEEEEEEESSCSEEECTTCCEEEECCCCSEECCCTTCSCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCC
T ss_pred chHHhhhcccCCcceeecccccccccchhhhhccCCCCCCcccCCccchHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 999999999999877777788889999999999998899999999999999999999999998887653 256789
Q ss_pred CccccceeccCCchHHHHHHHHHhhhhhhhccccCchhhHHhhhcCCCCCCCcchhhhhhhHHHHHHHHHHHHhhhhcCC
Q 012253 241 SMLDVDYFVFHSPYNKLVQKSFARLFFNDFLRNASSVDEIAKEKLAPYSTLSDVESYQSRDLEKASQQVAKQLYDLKVQP 320 (467)
Q Consensus 241 ~~~d~d~~i~H~p~~k~~~k~~~~l~~~~~~~~~~~~~~~~~~~l~~~~g~~~e~~~~~~~~~k~~~~~~~~~~~~~~~~ 320 (467)
+++|||+++|||||.||+++++++|+++++...........++.++++.+++.++.|.+++++|.+.+..++.|..++++
T Consensus 243 ~~~d~d~~v~Hqp~~r~~~k~~~rL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~e~ 322 (460)
T 2wya_A 243 TLDDLQYMIFHTPFCKMVQKSLARLMFNDFLSASSDTQTSLYKGLEAFGGLKLEDTYTNKDLDKALLKASQDMFDKKTKA 322 (460)
T ss_dssp CGGGCSEEEECCSSHHHHHHHHHHHHHHHHHHSCHHHHHHHCGGGGGGTTCCGGGGGTCHHHHHHHHHHHHHHHHHHTGG
T ss_pred CHHHHhhhhhcccchHHHHHHHHHhcchhhhhcccchhhhhhhhhhhhcCCchhhhhhhhHHHHHHHHHHHHHhhcchhh
Confidence 99999999999999999999999999988775544333334455677789999999999999999999999999999999
Q ss_pred CcccccccCccccchHHHHHHHHHhhc-CcCCCCCEEEEEEeccccceeeEEEEEecCCCC-cch-hhhhhcCChHHHhc
Q 012253 321 STLIPKQVGNMYTASLYAAFASLLHEK-HSSLEGKRVIMFSYGSGLTATMFSLQLQEGHRP-FSL-SNIVKVMDVPGKLK 397 (467)
Q Consensus 321 s~~~~~~~GN~~taS~~l~L~~~l~~~-~~~~~G~~ill~syGsG~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~L~ 397 (467)
++.+.+++|||||||+|++|++++++. +++++||||+|+|||||+++++|+++++++..+ ... +.+.+.+++.++|+
T Consensus 323 ~~~~~~~~GNt~sASiplaL~~ll~~~~~~~~~GdrIll~~fGSGl~s~~fs~~v~~~~~~~~~~~~~~~~~~~~~~~L~ 402 (460)
T 2wya_A 323 SLYLSTHNGNMYTSSLYGCLASLLSHHSAQELAGSRIGAFSYGSGLAASFFSFRVSQDAAPGSPLDKLVSSTSDLPKRLA 402 (460)
T ss_dssp GGHHHHHHCCCGGGHHHHHHHHHHHHSCHHHHTTCEEEEEEEETTTEEEEEEEEECSCCSTTSHHHHHHHTTTTHHHHHH
T ss_pred hhhHHHhhCCcchhhHHHHHHHHHHhccccCCCCCEEEEEEecCCccceEEEEEEeCCccccchHHHHHHHhhhHHHHHh
Confidence 999999999999999999999999862 235699999999999999999999999983221 111 23566789999999
Q ss_pred ccccCChHHHHHHHHHHHHhcCCCCCccCCCCCCcCCCcEEEEeeCCCCceEEeeec
Q 012253 398 LRHEFPPEKFVDIMKLMEHRYGAKDFVTSKDSSLLSPGTCYLTEVDSMFRRFYAKKE 454 (467)
Q Consensus 398 ~r~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~R~Y~~~~ 454 (467)
+|+++|++||+++++.|++.|+.++|.|.++.+.++||+|||++||++|||+|+++|
T Consensus 403 ~R~~~s~~~y~~~~~~r~~~~~~~~~~~~~~~~~~~~g~~~l~~i~~~~~R~Y~~~~ 459 (460)
T 2wya_A 403 SRKCVSPEEFTEIMNQREQFYHKVNFSPPGDTNSLFPGTWYLERVDEQHRRKYARRP 459 (460)
T ss_dssp TSEEECHHHHHHHHHHHHHHTTCCSBCCCSCGGGSCTTCEEEEEECTTSCEEEEECC
T ss_pred cCccCCHHHHHHHHHHHHHhccCCCCCCCCcccccCCCcEEeeecCCCceEEEeecc
Confidence 999999999999999999999999999999999999999999999999999999986
|
| >2p8u_A Hydroxymethylglutaryl-COA synthase, cytoplasmic; hydromethylglutaryl COA, mevalonate pathway, structural GENO structural genomics consortium, SGC; HET: COA; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-85 Score=688.05 Aligned_cols=449 Identities=50% Similarity=0.862 Sum_probs=411.3
Q ss_pred CCCceeEEeEEEEecCCceeehhHHhhhhCCCcCeeEEeccceEeeccCCCCCHHHHHHHHHHHHHHHcCCCcCCcCEEE
Q 012253 4 WHPKNVGILALDIYFPPTCVLQEALEVHDGVSKGKYTVGLGQDCMAFCSEVEDVISMSLTVVTSLLEKYKIDPTQIGRLE 83 (467)
Q Consensus 4 ~~~~~vgI~ai~~y~P~~~v~~~el~~~~g~~~~k~~~Gig~r~~av~~~~Ed~~~ma~~Aa~~aL~~agi~~~~Id~Li 83 (467)
+++|+|||.+|++|+|+++|+++||++..|++++||..|+|+++++++.++|++.+||++|+++||+++|++|++||+||
T Consensus 20 ~~~~~vgI~aig~y~P~~~v~~~el~~~~g~~~~~~~~~~Gi~~r~~~~~~e~~~~La~~Aa~~aL~~agi~~~dId~li 99 (478)
T 2p8u_A 20 FQSMDVGIVALEIYFPSQYVDQAELEKYDGVDAGKYTIGLGQAKMGFCTDREDINSLCMTVVQNLMERNNLSYDCIGRLE 99 (478)
T ss_dssp HHHHCCEEEEEEEECCSEEEEHHHHHHHHTCCTTCCCCCCCCCEEECCCTTCCHHHHHHHHHHHHHHHTTCCGGGEEEEE
T ss_pred cCCCceEEEEEEEECCCeEecHHHHHHHhCCChhHhecccCceEEEeCCCCCCHHHHHHHHHHHHHHHcCCCHHHCCEEE
Confidence 34688999999999999999999999999999999998999999999889999999999999999999999999999999
Q ss_pred EEeccCCCCCCcHHHHHHHHhcccCCCCeeEEeeCCcChHHHHHHHHHHHHHHhCCCCCCEEEEEEeecccccCCCCCCc
Q 012253 84 VGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDSAVYAEGPARPT 163 (467)
Q Consensus 84 ~~Tes~~~~~ps~a~~v~~~Lgl~G~~~~~~~di~~aC~gg~~AL~~A~~~l~a~~~~~~~aLVV~sD~~~y~~~~~~~t 163 (467)
++|+|+++..|+++++|++.|+++|.+++.+||+++||+||++||++|.+||++|.+|.++||||++|++.|.+++++++
T Consensus 100 ~~T~t~~~~~ps~a~~v~~~L~~lG~~~~~~~dv~~aC~gg~~AL~~A~~~i~sg~~~~~~aLVV~~Eia~~~~~~~~~~ 179 (478)
T 2p8u_A 100 VGTETIIDKSKSVKTNLMQLFEESGNTDIEGIDTTNACYGGTAAVFNAVNWIESSSWDGRYALVVAGDIAVYATGNARPT 179 (478)
T ss_dssp EECSCCSCSSSCHHHHHGGGTTTTTCCCCBCCEEESGGGHHHHHHHHHHHHHTSTTCCSCEEEEEEEEEECCCSSTTGGG
T ss_pred EEccCCcccCccHHHHHHHHHhhcCCCCceEEEEcchhHHHHHHHHHHHHHHHcCCccCCEEEEEEeeeecccCCCCCCc
Confidence 99999999999999999988888777899999999999999999999999999996446999999999999988888999
Q ss_pred cccceeEEEecCCCCceeecccccccccCcccccccCCCCCCceecCcchHHHHHHHHHHHHHHHHHHHHhhh-----cC
Q 012253 164 GGAAAVAMLIGPDAPIAFESKLRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKYFCQKFEKLE-----GR 238 (467)
Q Consensus 164 ~GdGAvA~Ll~~~~~~~~~~~~~~~~~~~~~df~~p~~~~~~~~vdG~~s~~~y~~a~~~~~~~~~~~~~~~~-----~~ 238 (467)
|||||+||||++++++.++.+..++++.+.+|||+|..+++||.+||++++.+|+.+++.+++.+.+++.... ++
T Consensus 180 fGdGA~A~Ll~~~~~~~l~~~~~gs~~~~~~d~~~p~~~~~~~~~dG~~s~~~y~~a~~~~~~~~~~~l~~~~~~~~~~~ 259 (478)
T 2p8u_A 180 GGVGAVALLIGPNAPLIFERGLRGTHMQHAYDFYKPDMLSEYPIVDGKLSIQCYLSALDRCYSVYCKKIHAQWQKEGNDK 259 (478)
T ss_dssp CEEEEEEEEEESSCSEEECTTCCEEEECCCCSEECCCTTCSSCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred ccceeEEEEEecCCCceEeeccceecccchhheeeecCCCcceEEcCcchHHHHHHHHHHHHHHHHHHHhhhcccccccc
Confidence 9999999999999876566555788888999999999888899999999999999999999999988874211 67
Q ss_pred CCCccccceeccCCchHHHHHHHHHhhhhhhhccccCchhhHHhhhcCCCCCCCcchhhhhhhHHHHHHHHHHHHhhhhc
Q 012253 239 QFSMLDVDYFVFHSPYNKLVQKSFARLFFNDFLRNASSVDEIAKEKLAPYSTLSDVESYQSRDLEKASQQVAKQLYDLKV 318 (467)
Q Consensus 239 ~~~~~d~d~~i~H~p~~k~~~k~~~~l~~~~~~~~~~~~~~~~~~~l~~~~g~~~e~~~~~~~~~k~~~~~~~~~~~~~~ 318 (467)
++.++|||+|+|||||.+|+++++++|.+++|...+....+..++++.++..++.+++|+|++++|+|...+++.|++|+
T Consensus 260 g~~~~did~~v~H~~~~ki~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ek~~~~~~~~~~~~k~ 339 (478)
T 2p8u_A 260 DFTLNDFGFMIFHSPYCKLVQKSLARMLLNDFLNDQNRDKNSIYSGLEAFGDVKLEDTYFDRDVEKAFMKASSELFSQKT 339 (478)
T ss_dssp CCCGGGCSEEEECCSSHHHHHHHHHHHHHHHHHHCTTGGGSGGGTTCGGGTTCCGGGCTTCHHHHHHHHHHTHHHHHHHT
T ss_pred CCChHHcCEEEecCCcHHHHHHHHHHhCcccccccccccccccccccchhccCChhhcccchhHHHHHHHHhHHHHHHhH
Confidence 88999999999999999999999999998887765543333456677777889999999999999999999999999999
Q ss_pred CCCcccccccCccccchHHHHHHHHHhhcCc--CCCCCEEEEEEeccccceeeEEEEEecCCC-CcchhhhhhcC-ChHH
Q 012253 319 QPSTLIPKQVGNMYTASLYAAFASLLHEKHS--SLEGKRVIMFSYGSGLTATMFSLQLQEGHR-PFSLSNIVKVM-DVPG 394 (467)
Q Consensus 319 ~~s~~~~~~~GN~~taS~~l~L~~~l~~~~~--~~~G~~ill~syGsG~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~ 394 (467)
+|++.+.+++|||||||+|++|++++++ ++ +++|++|+|+|||||+++++++++|+++.. ++.+++++++. ++.+
T Consensus 340 ~~~~~~~~~~GN~~saSi~l~L~~ll~~-~~~~~~~Gdrill~s~GsG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 418 (478)
T 2p8u_A 340 KASLLVSNQNGNMYTSSVYGSLASVLAQ-YSPQQLAGKRIGVFSYGSGLAATLYSLKVTQDATPGSALDKITASLCDLKS 418 (478)
T ss_dssp TGGGHHHHHHCCCGGGHHHHHHHHHHHH-SCHHHHTTCEEEEEEEETTTEEEEEEEEECSCCCTTSHHHHHHHTTTTHHH
T ss_pred HHHHHHHHhcCchHHHHHHHHHHHHHHh-CCccCCCCCEEEEEEEcchhhhEEEEEEEeCCCCcchhHHHHHHHHHHHHH
Confidence 9999999999999999999999999998 66 679999999999999999999999998422 34499999998 9999
Q ss_pred HhcccccCChHHHHHHHHHHHHhcCCCCCccCCCCCCcCCCcEEEEeeCCCCceEEeee
Q 012253 395 KLKLRHEFPPEKFVDIMKLMEHRYGAKDFVTSKDSSLLSPGTCYLTEVDSMFRRFYAKK 453 (467)
Q Consensus 395 ~L~~r~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~R~Y~~~ 453 (467)
+|++|+.+|++||+++++.|++.|++++|+|.++.+.++||+|||++|+++|||+|+++
T Consensus 419 ~L~~r~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~r~Y~~~ 477 (478)
T 2p8u_A 419 RLDSRTGVAPDVFAENMKLREDTHHLVNYIPQGSIDSLFEGTWYLVRVDEKHRRTYARR 477 (478)
T ss_dssp HHHTSEECCHHHHHHHHHHHHHHTTCCSBCCCSCSTTSCTTCEEEEEECTTSCEEEEEC
T ss_pred HHhCCccCCHHHHHHHHHhhHhhcCCCCCCCCCCcccCCCceEEEeEEcCCCeEEEEeC
Confidence 99999999999999999999999999999999998888999999999999999999985
|
| >2f82_A HMG-COA synthase; HMGS1, transferase; 2.10A {Brassica juncea} PDB: 2f9a_A* 2fa0_A* 2fa3_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-82 Score=660.35 Aligned_cols=447 Identities=83% Similarity=1.300 Sum_probs=408.4
Q ss_pred CceeEEeEEEEecCCceeehhHHhhhhCCCcCeeEEeccceEeeccCCCCCHHHHHHHHHHHHHHHcCCCcCCcCEEEEE
Q 012253 6 PKNVGILALDIYFPPTCVLQEALEVHDGVSKGKYTVGLGQDCMAFCSEVEDVISMSLTVVTSLLEKYKIDPTQIGRLEVG 85 (467)
Q Consensus 6 ~~~vgI~ai~~y~P~~~v~~~el~~~~g~~~~k~~~Gig~r~~av~~~~Ed~~~ma~~Aa~~aL~~agi~~~~Id~Li~~ 85 (467)
|++|+|.++++|+|+++|++++|++..|.+++||++|+|++++++++++|++.+||++|+++||+++|++|++||+||++
T Consensus 1 ~~~v~I~~ig~y~P~~~v~~~~l~~~~g~~~~~~~~g~G~~~~~~~~~~e~~~~La~~Aa~~aL~~agi~~~~Id~li~~ 80 (450)
T 2f82_A 1 AKNVGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQDCLAFCTELEDVISMSFNAVTSLLEKYKIDPKQIGRLEVG 80 (450)
T ss_dssp CCSCEEEEEEEECCSEEEEHHHHHHHTTCCTTTTTTTSCCCEEECCCTTCCHHHHHHHHHHHHHHHTTCCGGGEEEEEEE
T ss_pred CCceEEEEEEEECCCeeccHHHHHHHhCCCHHHhhhhhCceeeeeCCCCCCHHHHHHHHHHHHHHHcCcCHHHCCEEEEE
Confidence 57899999999999999999999999999999999899999999988999999999999999999999999999999999
Q ss_pred eccCCCCCCcHHHHHHHHhcccCCCCeeEEeeCCcChHHHHHHHHHHHHHHhCCCCCCEEEEEEeecccccCCCCCCccc
Q 012253 86 SETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDSAVYAEGPARPTGG 165 (467)
Q Consensus 86 Tes~~~~~ps~a~~v~~~Lgl~G~~~~~~~di~~aC~gg~~AL~~A~~~l~a~~~~~~~aLVV~sD~~~y~~~~~~~t~G 165 (467)
|+|+++..|+++.+|++.||++|++++.++|+++||+||+.||.+|.++|++|.+++++||||++|++.|.+...+++||
T Consensus 81 t~t~~~~~p~~a~~v~~~lgl~g~~~~~~~~v~~aC~gg~~AL~~A~~~I~sg~~~~~~vLVvg~e~~~~~~~~~~~~fG 160 (450)
T 2f82_A 81 SETVIDKSKSIKTFLMQLFEKCGNTDVEGVDSTNACYGGTAALLNCVNWVESNSWDGRYGLVICTDSAVYAEGPARPTGG 160 (450)
T ss_dssp CCCCSCSSSCHHHHHTHHHHTTTCCCCBCCEECSGGGHHHHHHHHHHHHHHSTTCCSCEEEEEEEEEECCSSSTTGGGCE
T ss_pred ecCCCCCCCcHHHHHHHHhCCcCCCCceEEEhhhhhHHHHHHHHHHHHHHHcCCCcCCeEEEEEeeeccccCCCCCcccc
Confidence 99999999999999999999977788999999999999999999999999999755799999999999887777889999
Q ss_pred cceeEEEecCCCCceeecccccccccCcccccccCCCCCCceecCcchHHHHHHHHHHHHHHHHHHHHhhhcCCCCcccc
Q 012253 166 AAAVAMLIGPDAPIAFESKLRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKYFCQKFEKLEGRQFSMLDV 245 (467)
Q Consensus 166 dGAvA~Ll~~~~~~~~~~~~~~~~~~~~~df~~p~~~~~~~~vdG~~s~~~y~~a~~~~~~~~~~~~~~~~~~~~~~~d~ 245 (467)
|||+||||++++++.++.+..++++.+.+|||+|..+++||.++|+++..+|++++..+++.+++++...+++++.++||
T Consensus 161 DGA~A~ll~~~~~~~~~~~~~g~~~~~~~d~~~p~~~~~~~~~~G~~~~~~~~~~l~~~~~~~l~~~~~~~~agl~~~di 240 (450)
T 2f82_A 161 AAAIAMLIGPDAPIVFESKLRGSHMAHVYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKHLCNKFEKLEGKEFSINDA 240 (450)
T ss_dssp EEEEEEEEESSCSEEEEEEEEEEEECCCCSEECCCTTCSCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCCGGGC
T ss_pred cceEEEEeccCCceEEEeccceeehhhccceeeeCCCCCceeecCccHHHHHHHHHHHHHHHHHHHhhhccccCCChhhc
Confidence 99999999998765455445677888889999998778899999999999999999999999988764223678999999
Q ss_pred ceeccCCchHHHHHHHHHhhhhhhhccccCchhhHHhhhcCCCCCCCcchhhhhhhHHHHHHHHHHHHhhhhcCCCcccc
Q 012253 246 DYFVFHSPYNKLVQKSFARLFFNDFLRNASSVDEIAKEKLAPYSTLSDVESYQSRDLEKASQQVAKQLYDLKVQPSTLIP 325 (467)
Q Consensus 246 d~~i~H~p~~k~~~k~~~~l~~~~~~~~~~~~~~~~~~~l~~~~g~~~e~~~~~~~~~k~~~~~~~~~~~~~~~~s~~~~ 325 (467)
|+|+|||||.+|+++++++|.+++|...+...++..+++|.++..++.+++|+||++||++.+++++.|++|+.||+.+.
T Consensus 241 d~~v~Hq~~~~i~~~~~~~L~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ek~~~~~~~~~~~~k~~~s~~~~ 320 (450)
T 2f82_A 241 DYFVFHSPYNKLVQKSFARLLYNDFLRNASSIDEAAKEKFTPYSSLSLDESYQSRDLEKVSQQLAKTYYDAKVQPTTLVP 320 (450)
T ss_dssp SEEEECCSSHHHHHHHHHHHHHHHHHTTCTTCCHHHHHHHGGGTTCCHHHHHTCHHHHHHHHHHHHHHHHHHTGGGCHHH
T ss_pred CEEEecCChHHHHHHHHHHhcccccccccccccccccccccccccccccccccchhHHHHHhhhhHHHHHHhhhHHHHHH
Confidence 99999999999999999999888877655443344566676677899999999999999999999999999999999999
Q ss_pred cccCccccchHHHHHHHHHhhcCc-CCCCCEEEEEEeccccceeeEEEEEecCCCCcchhhhhhcCChHHHhcccccCCh
Q 012253 326 KQVGNMYTASLYAAFASLLHEKHS-SLEGKRVIMFSYGSGLTATMFSLQLQEGHRPFSLSNIVKVMDVPGKLKLRHEFPP 404 (467)
Q Consensus 326 ~~~GN~~taS~~l~L~~~l~~~~~-~~~G~~ill~syGsG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~r~~~~~ 404 (467)
+++|||||||+|++|++++++ +. +++|++|+|+|||||+++++++++|.++..+|.+++++++.++.++|++|+.+|+
T Consensus 321 ~~~GN~~saSi~l~L~~~l~~-~~~~~~Gd~ill~s~GsG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~ 399 (450)
T 2f82_A 321 KQVGNMYTASLYAAFASLVHN-KHSDLAGKRVVMFSYGSGSTATMFSLRLCENQSPFSLSNIASVMDVGGKLKARHEYAP 399 (450)
T ss_dssp HHHCCCGGGHHHHHHHHHHHH-HGGGCTTCEEEEEEEETTTEEEEEEEEECCCCTTSSHHHHHHHHCHHHHHHTCEECCH
T ss_pred HhcCchHHHHHHHHHHHHHHh-CccCCCCCEEEEEeecCCcccEEEEEEEeCCCcchhHHHHHHhccHHHHHhCCccCCH
Confidence 999999999999999999998 54 6799999999999999999999999984444559999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCccCCC--CCCcCCCcEEEEeeCCCCceEEeee
Q 012253 405 EKFVDIMKLMEHRYGAKDFVTSKD--SSLLSPGTCYLTEVDSMFRRFYAKK 453 (467)
Q Consensus 405 ~~y~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~i~~~~~R~Y~~~ 453 (467)
+||+++++.|++.|++++|.|.++ .+.++||+|||++|+++|||+|+++
T Consensus 400 ~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~r~Y~~~ 450 (450)
T 2f82_A 400 EKFVETMKLMEHRYGAKEFVTSKEGILDLLAPGTYYLKEVDSLYRRFYGKK 450 (450)
T ss_dssp HHHHHHHHHHHHHTTCCSEECCCTTTGGGSCTTCEEEEEECTTSCEEEEEC
T ss_pred HHHHHHHHHhHhhcCCCCCCCCCccccccCCCccEEEeEEcCCCeEEEeeC
Confidence 999999999999999999999988 5677899999999999999999875
|
| >3v4n_A HMG-COA synthase; hydroxymethylglutaryl-COA synthase, nitrosylation, transfera inhibitor complex; HET: BTB; 1.60A {Enterococcus faecalis} PDB: 3v4x_A* 1x9e_A 1ysl_B* 1ysl_A* 2hdb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-71 Score=566.58 Aligned_cols=381 Identities=27% Similarity=0.428 Sum_probs=333.0
Q ss_pred CceeEEeEEEEecCCceeehhHHhhhhCCCcCeeEEeccceEeeccCCCCCHHHHHHHHHHHHHHHcCCCcCCcCEEEEE
Q 012253 6 PKNVGILALDIYFPPTCVLQEALEVHDGVSKGKYTVGLGQDCMAFCSEVEDVISMSLTVVTSLLEKYKIDPTQIGRLEVG 85 (467)
Q Consensus 6 ~~~vgI~ai~~y~P~~~v~~~el~~~~g~~~~k~~~Gig~r~~av~~~~Ed~~~ma~~Aa~~aL~~agi~~~~Id~Li~~ 85 (467)
.|+|+|.++++|+|+++|+++||++..|.+++|+.+|+|++++++++++|++.+||++|+++||++++ |++||+||++
T Consensus 5 ~m~v~I~~~g~y~P~~~v~~~~l~~~~g~~~~~~~~~~Gi~~r~~~~~~e~~~~La~~Aa~~aL~~a~--~~~Id~li~~ 82 (388)
T 3v4n_A 5 SMTIGIDKISFFVPPYYIDMTALAEARNVDPGKFHIGIGQDQMAVNPISQDIVTFAANAAEAILTKED--KEAIDMVIVG 82 (388)
T ss_dssp SCCEEEEEEEEECCSEEEEHHHHHHHTTSCTHHHHTTTCCCEEECCCTTCCHHHHHHHHHHTTCCHHH--HHHEEEEEEE
T ss_pred ceeEEEEEEEEECCCeEEcHHHHHHHhCCCHHHHHHHhCceEEEECCCCCCHHHHHHHHHHHHHHhCC--cccCCEEEEE
Confidence 47899999999999999999999999999999998899999999999999999999999999999986 8999999999
Q ss_pred eccCCCCCCcHHHHHHHHhcccCCCCeeEEeeCCcChHHHHHHHHHHHHHHhCCCCCCEEEEEEeeccccc-CCCCCCcc
Q 012253 86 SETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDSAVYA-EGPARPTG 164 (467)
Q Consensus 86 Tes~~~~~ps~a~~v~~~Lgl~G~~~~~~~di~~aC~gg~~AL~~A~~~l~a~~~~~~~aLVV~sD~~~y~-~~~~~~t~ 164 (467)
|+|+++..|+++++|+++||+ ++++.++|+++||+|+++||++|..+|++| +.++||||++|++.+. +++++++|
T Consensus 83 t~t~~~~~ps~a~~v~~~LGl--~~~~~~~dv~~aC~gg~~AL~~A~~~i~sg--~~~~vLVvg~e~~s~~~~~~~~~lf 158 (388)
T 3v4n_A 83 TESSIDESKAAAVVLHRLMGI--QPFARSFEIKEAXYGATAGLQLAKNHVALH--PDKKVLVVAADIAKYGLNSGGEPTQ 158 (388)
T ss_dssp CSSCSBSSSCHHHHHHHHTTC--CSSCEEEEEESGGGHHHHHHHHHHHHHHHC--TTCEEEEEEEEEECCCTTCTTGGGC
T ss_pred eccCCCcCccHHHHHHHHcCC--CCCceEeehhhhhhHHHHHHHHHHHHHhcC--CCCEEEEEEehhhcccCCCCCCCcc
Confidence 999999999999999999998 566999999999999999999999999999 4599999999999654 45679999
Q ss_pred ccceeEEEecCCCCc-eeecccccccccCcccccccCCCCCCceecCcchHHHHHHHHHHHHHHHHHHHHhhhcCCCCcc
Q 012253 165 GAAAVAMLIGPDAPI-AFESKLRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKYFCQKFEKLEGRQFSML 243 (467)
Q Consensus 165 GdGAvA~Ll~~~~~~-~~~~~~~~~~~~~~~df~~p~~~~~~~~vdG~~s~~~y~~a~~~~~~~~~~~~~~~~~~~~~~~ 243 (467)
||||+||||++++++ .++.. ...++.+.+|||+|. +..|+.++|+++.++|.+.+..+++.++++. +++++
T Consensus 159 GDGA~A~ll~~~~~il~~~~~-~~~~~~~~~df~~p~-~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~------g~~~~ 230 (388)
T 3v4n_A 159 GAGAVAMLVSSEPRILALKED-NVMLTQDIYDFWRPT-GHPYPMVDGPLSNETYIQSFAQVWDEHKKRT------GLDFA 230 (388)
T ss_dssp EEEEEEEEEEESCSSEEECSC-CEEEECCCCSEECBT-TCSSCEECHHHHHHHHHHHHHHHHHHHHHHH------CCCGG
T ss_pred ccceeEEEeecCCCceEEecc-ccccchhccccccCC-CCCCceeccHhHHHHHHHHHHHHHHHHHHHh------CCCHH
Confidence 999999999998874 45432 445667889999997 4668999999999999999999999988776 68999
Q ss_pred ccceeccCCchHHHHHHHHHhhhhhhhccccCchhhHHhhhcCCCCCCCcchhhhhhhHHHHHHHHHHHHhhhhcCCCcc
Q 012253 244 DVDYFVFHSPYNKLVQKSFARLFFNDFLRNASSVDEIAKEKLAPYSTLSDVESYQSRDLEKASQQVAKQLYDLKVQPSTL 323 (467)
Q Consensus 244 d~d~~i~H~p~~k~~~k~~~~l~~~~~~~~~~~~~~~~~~~l~~~~g~~~e~~~~~~~~~k~~~~~~~~~~~~~~~~s~~ 323 (467)
|||+|+|||||+||++|+.++++.. ..+. + ++.+.-..++++.
T Consensus 231 did~~v~Hqp~~k~~~ka~~ril~~-----------------------~~~~------~--------~~~l~~~~e~~~~ 273 (388)
T 3v4n_A 231 DYDALAFHIPYTKMGKKALLAKISD-----------------------QTEA------E--------QERILARYEESII 273 (388)
T ss_dssp GCSEEEECCSSHHHHHHHHHHHSTT-----------------------SCHH------H--------HHHHHHHHHHHTT
T ss_pred HCCEEEeCCCcchHHHHHHHHHHhc-----------------------ccHH------H--------HHHhCCCHHHHhh
Confidence 9999999999999999998887411 0000 0 1111111223445
Q ss_pred cccccCccccchHHHHHHHHHhhcCcCCCCCEEEEEEeccccceeeEEEEEecCCCCcchhhhhhcCChHHHhcccccCC
Q 012253 324 IPKQVGNMYTASLYAAFASLLHEKHSSLEGKRVIMFSYGSGLTATMFSLQLQEGHRPFSLSNIVKVMDVPGKLKLRHEFP 403 (467)
Q Consensus 324 ~~~~~GN~~taS~~l~L~~~l~~~~~~~~G~~ill~syGsG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~r~~~~ 403 (467)
+.+++|||||||+|++|++++++.+++++|++|+|+|||+|+++++|++++++ ++++++++.++.++|++|+++|
T Consensus 274 ~~~~~GN~~sASi~l~L~~~l~~~g~~~~Gd~ill~s~GsG~~ae~~~~~v~~-----~~~~~~~~~~~~~~l~~r~~~~ 348 (388)
T 3v4n_A 274 YSRRVGNLYTGSLYLGLISLLENATTLTAGNQIGLFSYGSGAVAEFFTGELVA-----GYQNHLQKETHLALLDNRTELS 348 (388)
T ss_dssp TGGGTCCCGGGHHHHHHHHHHHHCSSCCTTCEEEEEEEETTTEEEEEEEEECT-----TGGGSCCHHHHHHHHHTCEECC
T ss_pred HHHhcCchHHHHHHHHHHHHHHhcCcCCCCCEEEEEEecCcceeEEEEEEEcc-----CHHHHHHhhhHHHHHhCCccCC
Confidence 66999999999999999999997446789999999999999999999999999 8999887789999999999999
Q ss_pred hHHHHHHHHHHHHhcCCCCCccCCCCCCcCCCcEEEEeeCCCCceEEe
Q 012253 404 PEKFVDIMKLMEHRYGAKDFVTSKDSSLLSPGTCYLTEVDSMFRRFYA 451 (467)
Q Consensus 404 ~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~R~Y~ 451 (467)
+++|+++++. +|.|.++.+.+.+|+|||++|++ |+|+|+
T Consensus 349 ~~~y~~~~~~--------~~~~~~~~~~~~~~~~~l~~~~~-~~r~y~ 387 (388)
T 3v4n_A 349 IAEYEAMFAE--------TLDTDIDQTLEDELKYSISAINN-TVRSYR 387 (388)
T ss_dssp HHHHHHHHHC--------CCCTTSCEECCCSSTTCEEEEET-TEEEEC
T ss_pred HHHHHHHHhc--------cCCCCCccccCCCCCEEEeeeeC-CEeecC
Confidence 9999999863 66788877777899999999999 699996
|
| >1xpm_A 3-hydroxy-3-methylglutaryl COA synthase; HMG-COA synthase, HMGS, coenzyme A, thiolase fold, condensing enzyme; HET: HMG CAA; 1.60A {Staphylococcus aureus subsp} SCOP: c.95.1.2 c.95.1.2 PDB: 1xpl_A* 1xpk_A* 1tvz_A 1txt_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-67 Score=544.84 Aligned_cols=386 Identities=24% Similarity=0.418 Sum_probs=339.5
Q ss_pred ceeEEeEEEEecCCceeehhHHhhhhCCCcCeeEEeccceEeeccCCCCCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEe
Q 012253 7 KNVGILALDIYFPPTCVLQEALEVHDGVSKGKYTVGLGQDCMAFCSEVEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGS 86 (467)
Q Consensus 7 ~~vgI~ai~~y~P~~~v~~~el~~~~g~~~~k~~~Gig~r~~av~~~~Ed~~~ma~~Aa~~aL~~agi~~~~Id~Li~~T 86 (467)
|+|+|.++++|+|+++++++++++..|.+++||..++|++++++++++|++.+|+++|+++||++ ++|++||.||++|
T Consensus 1 m~v~I~~ig~y~P~~~v~~~~l~~~~~~~~~~i~~~~Gi~~r~~~~~~e~~~~la~~Aa~~aL~~--~~~~~Id~li~~t 78 (396)
T 1xpm_A 1 MAIGIDKINFYVPKYYVDMAKLAEARQVDPNKFLIGIGQTEMAVSPVNQDIVSMGANAAKDIITD--EDKKKIGMVIVAT 78 (396)
T ss_dssp -CEEEEEEEEECCSEEEEHHHHHHHTTSCHHHHHTTTCCSEEEECCTTCCHHHHHHHHHHTTCCH--HHHHHEEEEEEEC
T ss_pred CceEEEEEEEeCCCeEecHHHHHHHhCCCHHHHhhhcCceEEEeCCCCCCHHHHHHHHHHHHHhc--CCHHHCCEEEEEe
Confidence 46999999999999999999999999999999987888888888889999999999999999988 7899999999999
Q ss_pred ccCCCCCCcHHHHHHHHhcccCCCCeeEEeeCCcChHHHHHHHHHHHHHHhCCCCCCEEEEEEeeccccc-CCCCCCccc
Q 012253 87 ETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDSAVYA-EGPARPTGG 165 (467)
Q Consensus 87 es~~~~~ps~a~~v~~~Lgl~G~~~~~~~di~~aC~gg~~AL~~A~~~l~a~~~~~~~aLVV~sD~~~y~-~~~~~~t~G 165 (467)
+++++..|+++.+|+..||+ ++++.++|+++||+|++.||..|.++|++|. .++||||++|.+.+. +++.+++||
T Consensus 79 ~~~~~~~p~~a~~v~~~lGl--~~~~~~~~v~~aC~sg~~Al~~A~~~I~sg~--~~~vLvvg~e~s~~~~~~~~~~~~G 154 (396)
T 1xpm_A 79 ESAVDAAKAAAVQIHNLLGI--QPFARCFEMKEACYAATPAIQLAKDYLATRP--NEKVLVIATDTARYGLNSGGEPTQG 154 (396)
T ss_dssp SSCSBSSSCHHHHHHHHTTC--CSSCEEEEEESTTTTHHHHHHHHHHHHTTCT--TCEEEEEEEEEECCCTTCSSGGGCE
T ss_pred CCCCCCCCCHHHHHHHHhCC--CCCceEEEeccccHHHHHHHHHHHHHHHcCC--CCEEEEEeehhhccccCCCCCcccc
Confidence 99999999999999999998 5579999999999999999999999999994 599999999987664 445689999
Q ss_pred cceeEEEecCCCCc-eeecccccccccCcccccccCCCCCCceecCcchHHHHHHHHHHHHHHHHHHHHhhhcCCCCccc
Q 012253 166 AAAVAMLIGPDAPI-AFESKLRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKYFCQKFEKLEGRQFSMLD 244 (467)
Q Consensus 166 dGAvA~Ll~~~~~~-~~~~~~~~~~~~~~~df~~p~~~~~~~~vdG~~s~~~y~~a~~~~~~~~~~~~~~~~~~~~~~~d 244 (467)
|||+||||++++.+ .+..+ .++++.+.++||+|... .++.++|+.+..+|.+.+..+++.++++. +++++|
T Consensus 155 dGA~A~vl~~~~~i~~~~~~-~g~~~~d~~~~~~p~~~-~~~~~~G~~~~~~~~~~~~~~~~~~L~~a------gl~~~d 226 (396)
T 1xpm_A 155 AGAVAMVIAHNPSILALNED-AVAYTEDVYDFWRPTGH-KYPLVDGALSKDAYIRSFQQSWNEYAKRQ------GKSLAD 226 (396)
T ss_dssp EEEEEEEEEESCSSEEECSC-CEEEECCCCSEECBTTC-SSCEECHHHHHHHHHHHHHHHHHHHHHHH------TCCGGG
T ss_pred cceEEEEeccCCceEEEEec-cccccceEEEeeccCCC-CCeEEEcHHHHHHHHHHHHHHHHHHHHHc------CCCHHH
Confidence 99999999988764 45444 67778788999999743 47889999999999999999998888765 588999
Q ss_pred cceeccCCchHHHHHHHHHhhhhhhhccccCchhhHHhhhcCCCCCCCcchhhhhhhHHHHHHHHHHHHhhhhcCCCccc
Q 012253 245 VDYFVFHSPYNKLVQKSFARLFFNDFLRNASSVDEIAKEKLAPYSTLSDVESYQSRDLEKASQQVAKQLYDLKVQPSTLI 324 (467)
Q Consensus 245 ~d~~i~H~p~~k~~~k~~~~l~~~~~~~~~~~~~~~~~~~l~~~~g~~~e~~~~~~~~~k~~~~~~~~~~~~~~~~s~~~ 324 (467)
||+|++|||+.++++++.++|+... ..+..+.+..+++||+.+
T Consensus 227 id~~~~H~~~~~~~~~~~~~l~~~~-------------------------------------~~~~~e~~~~~~~~s~~~ 269 (396)
T 1xpm_A 227 FASLCFHVPFTKMGKKALESIIDNA-------------------------------------DETTQERLRSGYEDAVDY 269 (396)
T ss_dssp CSEEEECCSSHHHHHHHHHTTGGGS-------------------------------------CHHHHHHHHHHHHHHTTG
T ss_pred CCEEEecCCchHHHHHHHHHHHhhc-------------------------------------ccCCHHHHHHHhhhhhhh
Confidence 9999999999999999998884110 012234456678899999
Q ss_pred ccccCccccchHHHHHHHHHhhcCcCCCCCEEEEEEeccccceeeEEEEEecCCCCcchhhhhhcCChHHHhcccccCCh
Q 012253 325 PKQVGNMYTASLYAAFASLLHEKHSSLEGKRVIMFSYGSGLTATMFSLQLQEGHRPFSLSNIVKVMDVPGKLKLRHEFPP 404 (467)
Q Consensus 325 ~~~~GN~~taS~~l~L~~~l~~~~~~~~G~~ill~syGsG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~r~~~~~ 404 (467)
++++|||||||+|++|++++++ +++++|++|+|+|||+|+++++|+++|++ +++++++..++.++|++|+.+|+
T Consensus 270 ~~~~GN~~saSi~l~L~~~l~~-~~l~~Gd~ill~s~GsG~~~~~~~~~v~~-----~~~~~~~~~~~~~~l~~r~~~~~ 343 (396)
T 1xpm_A 270 NRYVGNIYTGSLYLSLISLLEN-RDLQAGETIGLFSYGSGSVGEFYSATLVE-----GYKDHLDQAAHKALLNNRTEVSV 343 (396)
T ss_dssp GGGTCCCGGGHHHHHHHHHHHH-SCCCTTCEEEEEEEETTTEEEEEEEEECT-----TGGGGCCHHHHHHHHHTCEECCH
T ss_pred hhhcCchHHHHHHHHHHHHHHc-CCCCCCCEEEEEEECcchhheEEEEEEcc-----cHHHHhhcccHHHHHhCCccCCH
Confidence 9999999999999999999998 78889999999999999999999999999 89998888889999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCccCCCCCCcCCCcEEEEeeCCCCceEEeee
Q 012253 405 EKFVDIMKLMEHRYGAKDFVTSKDSSLLSPGTCYLTEVDSMFRRFYAKK 453 (467)
Q Consensus 405 ~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~R~Y~~~ 453 (467)
+||+++++.|++.+. .|.++.+..++|+|||++|+++|||+|.++
T Consensus 344 ~~y~~~~~~~~~~~~----~~~~~~~~~~~~~~~l~~~~~~~r~~~~~~ 388 (396)
T 1xpm_A 344 DAYETFFKRFDDVEF----DEEQDAVHEDRHIFYLSNIENNVREYHRPE 388 (396)
T ss_dssp HHHHHHHHHHHTTCC----CTTTTTGGGGTTSCEEEEEETTEEEEECCT
T ss_pred HHHHHHHHhhhhccc----CCCCccccCCCCCEEEeEecccEEEEEEEe
Confidence 999999999887664 566666667899999999999666666554
|
| >4ewp_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; transferase; 2.20A {Micrococcus luteus nctc 2665} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-51 Score=413.47 Aligned_cols=310 Identities=19% Similarity=0.172 Sum_probs=245.2
Q ss_pred CCCceeEEeEEEEecCCceeehhHHhhhhCCCcCeeE--EeccceEeeccCCCCCHHHHHHHHHHHHHHHcCCCcCCcCE
Q 012253 4 WHPKNVGILALDIYFPPTCVLQEALEVHDGVSKGKYT--VGLGQDCMAFCSEVEDVISMSLTVVTSLLEKYKIDPTQIGR 81 (467)
Q Consensus 4 ~~~~~vgI~ai~~y~P~~~v~~~el~~~~g~~~~k~~--~Gig~r~~av~~~~Ed~~~ma~~Aa~~aL~~agi~~~~Id~ 81 (467)
.||...+|.++|.|+|+++|+|+||++..+.+.+|+. +||.+|++ +.++|++.+||++|+++||+++|++|+|||+
T Consensus 9 ~~~~~srI~g~g~ylP~~~v~n~el~~~~~~~~e~I~~rtGI~~R~~--a~~~e~~~~la~~Aa~~aL~~ag~~~~dId~ 86 (350)
T 4ewp_A 9 ERPAASRIVAVGAYRPANLVPNEDLIGPIDSSDEWIRQRTGIVTRQR--ATAEETVPVMAVGAAREALERAGLQGSDLDA 86 (350)
T ss_dssp CCCSEEEEEEEEEECCSCEEEHHHHTTTTTCCHHHHHHHHCCSEEEC--CCSSCCHHHHHHHHHHHHHHHTTCCGGGCSE
T ss_pred cCCCCCEEEEEEEEcCCCeEcHHHHHHHhCCCHHHHHhccCceEEEE--cCCCCCHHHHHHHHHHHHHHHcCCCHHHCCE
Confidence 4677889999999999999999999999999999883 68888874 5789999999999999999999999999999
Q ss_pred EEEEeccCCCCCCcHHHHHHHHhcccCCCCeeEEeeCCcChHHHHHHHHHHHHHHhCCCCCCEEEEEEeecc-cccCCC-
Q 012253 82 LEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDSA-VYAEGP- 159 (467)
Q Consensus 82 Li~~Tes~~~~~ps~a~~v~~~Lgl~G~~~~~~~di~~aC~gg~~AL~~A~~~l~a~~~~~~~aLVV~sD~~-~y~~~~- 159 (467)
||++|+|+++..|+++++||++||+ +++.+||+++||+|+++||++|.+++++|. .++||||++|.+ .+.++.
T Consensus 87 li~~t~t~~~~~P~~a~~v~~~LGl---~~~~a~di~~~C~g~~~aL~~A~~~i~~g~--~~~~Lvv~~E~~s~~~d~~~ 161 (350)
T 4ewp_A 87 VIVSTVTFPHATPSAAALVAHEIGA---TPAPAYDVSAACAGYCYGVAQADALVRSGT--ARHVLVVGVERLSDVVDPTD 161 (350)
T ss_dssp EEEECSCCSCSSSCHHHHHHHHTTC---TTSCEEEEECGGGHHHHHHHHHHHHHHTTS--CSEEEEEEEEEGGGGCCTTC
T ss_pred EEEEeccCCCCCCchHHHHHHHhCC---CCceEEEeecchhhHHHHHHHhhhhhhCCC--ccceeEeeeeeceecccccc
Confidence 9999999999999999999999998 567799999999999999999999999995 499999999998 444433
Q ss_pred --CCCccccceeEEEecCCCCcee---ecccccccccCc------------ccccccC-----------CCCCCceecCc
Q 012253 160 --ARPTGGAAAVAMLIGPDAPIAF---ESKLRGSHMSHA------------YDFYKPN-----------LASEYPVVDGK 211 (467)
Q Consensus 160 --~~~t~GdGAvA~Ll~~~~~~~~---~~~~~~~~~~~~------------~df~~p~-----------~~~~~~~vdG~ 211 (467)
....|||||+|+||++.+...+ ..+..+...... .+.++.. ....+..++|+
T Consensus 162 ~~~~~lfgDGA~A~vl~~~~~~~~~~~~~~sdg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 241 (350)
T 4ewp_A 162 RSISFLLGDGAGAVIVAASDEPGISPSVWGSDGERWSTISMTHSQLELRDAVEHARTTGDASAITGAEGMLWPTLRQDGP 241 (350)
T ss_dssp TTTGGGBCEEEEEEEEEEESSCCBCCCEEEECGGGTTSEEESSCHHHHHHHHHHHHHHSCCTTTTTCSSCSSCCEEECHH
T ss_pred cccccccccchheeeeecccCCCccceeeeecccccceeeecCCccccCcccccccccCCccccccccccccceeEehhH
Confidence 3567899999999987643111 111111111100 0000000 00113456776
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhhhcCCCCccccceeccCCchHHHHHHHHHhhhhhhhccccCchhhHHhhhcCCCCCC
Q 012253 212 LSQTCYLMALDSCYKYFCQKFEKLEGRQFSMLDVDYFVFHSPYNKLVQKSFARLFFNDFLRNASSVDEIAKEKLAPYSTL 291 (467)
Q Consensus 212 ~s~~~y~~a~~~~~~~~~~~~~~~~~~~~~~~d~d~~i~H~p~~k~~~k~~~~l~~~~~~~~~~~~~~~~~~~l~~~~g~ 291 (467)
.. |..++....+.+.+.+ ++++++++|||+|++||++.++++.+.++| ++
T Consensus 242 ~v---~~~a~~~~~~~i~~~L---~~~gl~~~did~~v~Hq~~~~i~~~~~~~L------------------------gl 291 (350)
T 4ewp_A 242 SV---FRWAVWSMAKVAREAL---DAAGVEPEDLAAFIPHQANMRIIDEFAKQL------------------------KL 291 (350)
T ss_dssp HH---HHHHHHTHHHHHHHHH---HHHTCCGGGEEEEEECCSCHHHHHHHHHHT------------------------TC
T ss_pred HH---HHHHHHhhhHHHHHHH---HhhcCChhHhceEEecCCCHHHHHHHHHHc------------------------Cc
Confidence 65 4444443333333333 345799999999999999999999999888 77
Q ss_pred CcchhhhhhhHHHHHHHHHHHHhhhhcCCCcccccccCccccchHHHHHHHHHhhcCcCCCCCEEEEEEeccccceeeEE
Q 012253 292 SDVESYQSRDLEKASQQVAKQLYDLKVQPSTLIPKQVGNMYTASLYAAFASLLHEKHSSLEGKRVIMFSYGSGLTATMFS 371 (467)
Q Consensus 292 ~~e~~~~~~~~~k~~~~~~~~~~~~~~~~s~~~~~~~GN~~taS~~l~L~~~l~~~~~~~~G~~ill~syGsG~~~~~~~ 371 (467)
|+++.+ + ...+++|||+|||+|++|.+++++ +++++|++|+|++||+|++|++.+
T Consensus 292 ~~~~~~----------------------~--~~l~~~GNtssasi~~~L~~~~~~-g~~~~Gd~vll~~fG~G~t~~~~v 346 (350)
T 4ewp_A 292 PESVVV----------------------A--RDIADAGNTSAASIPLAMHRLLEE-NPELSGGLALQIGFGAGLVYGAQV 346 (350)
T ss_dssp CTTSEE----------------------C--CTHHHHCBCGGGHHHHHHHHHHHH-CGGGTTSEEEEEEEETTTEEEEEE
T ss_pred ChHhEE----------------------e--cccccccchHHHHHHHHHHHHHHh-CCCCCcCEEEEEEEchhhEeEEEE
Confidence 776532 1 112689999999999999999998 889999999999999999999999
Q ss_pred EEEe
Q 012253 372 LQLQ 375 (467)
Q Consensus 372 ~~~~ 375 (467)
++|+
T Consensus 347 lr~P 350 (350)
T 4ewp_A 347 VRLP 350 (350)
T ss_dssp EECC
T ss_pred EEeC
Confidence 9984
|
| >3il3_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, fatty acid biosynthesis, antibiotic, acyltransferase, cytoplasm, lipid synthesis; 2.70A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-49 Score=394.17 Aligned_cols=303 Identities=16% Similarity=0.183 Sum_probs=248.8
Q ss_pred CceeEEeEEEEecCCceeehhHHhhhhCCCcCeeE--EeccceEeeccCCCCCHHHHHHHHHHHHHHHcCCCcCCcCEEE
Q 012253 6 PKNVGILALDIYFPPTCVLQEALEVHDGVSKGKYT--VGLGQDCMAFCSEVEDVISMSLTVVTSLLEKYKIDPTQIGRLE 83 (467)
Q Consensus 6 ~~~vgI~ai~~y~P~~~v~~~el~~~~g~~~~k~~--~Gig~r~~av~~~~Ed~~~ma~~Aa~~aL~~agi~~~~Id~Li 83 (467)
-|+-.|.+++.|+|+++|+++|+++..+.+++|+. +||.+|+ ++.++|++.+|+++|++++|+++|++|++||.||
T Consensus 7 ~~~~~~~~~g~ylP~~~v~n~~l~~~~~~~~~~i~~~tGi~~R~--~a~~~~~~~~La~~Aa~~aL~~ag~~~~~Id~vi 84 (323)
T 3il3_A 7 HMNSRILSTGSYLPSHIRTNADLEKMVDTSDEWIVTRSGIRERR--IAAEDETVATMGFEAAKNAIEAAQINPQDIELII 84 (323)
T ss_dssp -CEECCCEEEEECCSCEEEHHHHHTTSSCCHHHHHHHTCCCEEE--CCCTTCCHHHHHHHHHHHHHHHHCCCGGGCCEEE
T ss_pred cccCceeEEEEECCCceEcHHHHHHHhCCCHHHHHHhcCCcEEE--ECCCCCCHHHHHHHHHHHHHHHcCCCHHHCCEEE
Confidence 47889999999999999999999999999999985 4555554 6688999999999999999999999999999999
Q ss_pred EEeccCCCCCCcHHHHHHHHhcccCCCCeeEEeeCCcChHHHHHHHHHHHHHHhCCCCCCEEEEEEeecc-cccCCC---
Q 012253 84 VGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDSA-VYAEGP--- 159 (467)
Q Consensus 84 ~~Tes~~~~~ps~a~~v~~~Lgl~G~~~~~~~di~~aC~gg~~AL~~A~~~l~a~~~~~~~aLVV~sD~~-~y~~~~--- 159 (467)
++|+++++..|+++.+|+..||+ +++.++|++++|+|++.||.+|..+|++|.. ++||||++|.+ ...++.
T Consensus 85 ~~t~~~~~~~p~~a~~v~~~lGl---~~~~~~~v~~~C~s~~~al~~A~~~i~~g~~--~~vLvvg~e~~s~~~~~~d~~ 159 (323)
T 3il3_A 85 VATTSHSHAYPSAACQVQGLLNI---DDAISFDLAAACTGFVYALSVADQFIRAGKV--KKALVIGSDLNSRKLDETDRS 159 (323)
T ss_dssp EECSCCSCSSSCHHHHHHHHTTC---SSCEEEEECCGGGHHHHHHHHHHHHHHTTSC--SEEEEEEEEEGGGSCCTTCTT
T ss_pred EEeCCCCCCCccHHHHHHHHhCC---CCccEEEECCccHHHHHHHHHHHHHHHCCCC--CEEEEEEeeccccccCccccc
Confidence 99999998899999999999998 5799999999999999999999999999955 99999999998 333333
Q ss_pred CCCccccceeEEEecCCCC--c-eeecccccccccCcccccccC-----CCCCCceecCcchHHHHHHHHHHHHHHHHHH
Q 012253 160 ARPTGGAAAVAMLIGPDAP--I-AFESKLRGSHMSHAYDFYKPN-----LASEYPVVDGKLSQTCYLMALDSCYKYFCQK 231 (467)
Q Consensus 160 ~~~t~GdGAvA~Ll~~~~~--~-~~~~~~~~~~~~~~~df~~p~-----~~~~~~~vdG~~s~~~y~~a~~~~~~~~~~~ 231 (467)
....|||||+|+||++++. + .+.....+.+. ...+.|. ....|..++|+.+...+.+.+..+++.+++
T Consensus 160 ~~~lfGDGA~A~vl~~~~~~~i~~~~~~s~g~~~---~~~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~i~~~l~- 235 (323)
T 3il3_A 160 TVVLFGDGAGAVILEASEQEGIISTHLHASADKN---NALVLAQPERGIEKSGYIEMQGNETFKLAVRELSNVVEETLL- 235 (323)
T ss_dssp TTTTBCEEEEEEEEEEESSCCEEEEEEEECCCCS---CSEECCCCCTTCSSCSCCEECHHHHHHHHHHHHHHHHHHHHH-
T ss_pred cccccccceEEEEEEEcCCCCeEEEEEEEcCCCc---ceEEECCCCCCCCCCCcEEEcCHHHHHHHHHHHHHHHHHHHH-
Confidence 3467899999999997642 1 11111111111 1112231 123456788888766666666666655544
Q ss_pred HHhhhcCCCCccccceeccCCchHHHHHHHHHhhhhhhhccccCchhhHHhhhcCCCCCCCcchhhhhhhHHHHHHHHHH
Q 012253 232 FEKLEGRQFSMLDVDYFVFHSPYNKLVQKSFARLFFNDFLRNASSVDEIAKEKLAPYSTLSDVESYQSRDLEKASQQVAK 311 (467)
Q Consensus 232 ~~~~~~~~~~~~d~d~~i~H~p~~k~~~k~~~~l~~~~~~~~~~~~~~~~~~~l~~~~g~~~e~~~~~~~~~k~~~~~~~ 311 (467)
+++++++|||+|++||++.++++.+.++| ++++++.+.
T Consensus 236 -----~~gl~~~did~~v~Hq~~~~i~~~~~~~l------------------------gl~~ek~~~------------- 273 (323)
T 3il3_A 236 -----ANNLDKKDLDWLVPHQANLRIITATAKKL------------------------EMDMSQVVV------------- 273 (323)
T ss_dssp -----TTTCCTTTCCEEEECCSCHHHHHHHHHHT------------------------TCCGGGBCC-------------
T ss_pred -----HcCCCHHHCCEEEEcCCCHHHHHHHHHHc------------------------CcCHHHhhc-------------
Confidence 45799999999999999999999999888 788876431
Q ss_pred HHhhhhcCCCcccccccCccccchHHHHHHHHHhhcCcCCCCCEEEEEEeccccceeeEEEEE
Q 012253 312 QLYDLKVQPSTLIPKQVGNMYTASLYAAFASLLHEKHSSLEGKRVIMFSYGSGLTATMFSLQL 374 (467)
Q Consensus 312 ~~~~~~~~~s~~~~~~~GN~~taS~~l~L~~~l~~~~~~~~G~~ill~syGsG~~~~~~~~~~ 374 (467)
..+++|||+|||+|++|.+++++ +++++|++|+|++||+|++|++.+++|
T Consensus 274 ------------~l~~~GNt~sasi~~~L~~~~~~-g~~~~Gd~vll~~~G~G~t~~~~~l~~ 323 (323)
T 3il3_A 274 ------------TLDKYANNSAATVPVALDEAIRD-GRIQRGQLLLLEAFGGGWTWGSALVRF 323 (323)
T ss_dssp ------------CHHHHCBCGGGHHHHHHHHHHHT-TSSCTTCEEEEEEEETTTEEEEEEEEC
T ss_pred ------------cHhhcCchHHHHHHHHHHHHHHc-CCCCCCCEEEEEEEehhheeEEEEEEC
Confidence 12799999999999999999998 789999999999999999999999986
|
| >4efi_A 3-oxoacyl-(acyl-carrier protein) synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.35A {Burkholderia xenovorans} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-48 Score=394.56 Aligned_cols=309 Identities=15% Similarity=0.101 Sum_probs=246.2
Q ss_pred CceeEEeEEEEecCCceeehhHHhhhhCCCc-CeeE--EeccceEeeccCCCCCHHHHHHHHHHHHHHHcCCCcCCcCEE
Q 012253 6 PKNVGILALDIYFPPTCVLQEALEVHDGVSK-GKYT--VGLGQDCMAFCSEVEDVISMSLTVVTSLLEKYKIDPTQIGRL 82 (467)
Q Consensus 6 ~~~vgI~ai~~y~P~~~v~~~el~~~~g~~~-~k~~--~Gig~r~~av~~~~Ed~~~ma~~Aa~~aL~~agi~~~~Id~L 82 (467)
.++++|.+++.|+|+++|+++|+++..+.++ +|+. +||.+|+ ++.++|++.+|+++|+++||+++|++|++||.|
T Consensus 14 ~~~v~I~~ig~~lP~~~v~n~~l~~~~~~~~~~~i~~~tGI~~R~--~a~~~~~~~~La~~Aa~~aL~~agi~~~~Id~v 91 (354)
T 4efi_A 14 TQGARIAGVVSCVPSKQVDNDYFVERFDASAVRDVVKMIGVNRRR--WADAQTSAGDLCRKAGEKLLAGLGWQADSIDAL 91 (354)
T ss_dssp EESEEEEEEEEEECSCEEEGGGGTTTSCHHHHHHHHHHHCCSEEE--CCCTTCCHHHHHHHHHHHHHHHHTCCGGGCCEE
T ss_pred EcceEEEEEEEECCCcEEcHHHHHHHhCCCcHHHHHHhcCCeEEE--EcCCCCCHHHHHHHHHHHHHHHcCCCHHHCCEE
Confidence 4579999999999999999999999877643 6774 5777666 557899999999999999999999999999999
Q ss_pred EEEeccCCCCCCcHHHHHHHHhcccCCCCeeEEeeCCcChHHHHHHHHHHHHHHhCCCCCCEEEEEEeecc-cccCCCC-
Q 012253 83 EVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDSA-VYAEGPA- 160 (467)
Q Consensus 83 i~~Tes~~~~~ps~a~~v~~~Lgl~G~~~~~~~di~~aC~gg~~AL~~A~~~l~a~~~~~~~aLVV~sD~~-~y~~~~~- 160 (467)
|++|+++++..|+++.+|++.||+ ++++.++|++++|+|++.||..|..+|++|.. ++||||++|.+ ...++.+
T Consensus 92 i~~t~~~~~~~p~~a~~v~~~lGl--~~~~~~~~v~~aC~s~~~al~~A~~~i~~g~~--~~vLvvg~e~~s~~~~~~d~ 167 (354)
T 4efi_A 92 IFVSQTPNYRLPATAFVLQAELDL--PASCLALDINLGCSGYPQALWLGMNLIQTGAA--KRVLLAVGDTISKMIDPTDR 167 (354)
T ss_dssp EEECSSCSCSSSCHHHHHHHHTTC--CTTSEEEEECCCTTHHHHHHHHHHHHHHTTSC--SEEEEEEEECGGGGCCTTCH
T ss_pred EEEeCCCCCCCCcHHHHHHHHcCc--CCCccEEeeCcccHHHHHHHHHHHHHHHCCCC--CEEEEEEechhcccCCcccc
Confidence 999999988899999999999998 56899999999999999999999999999955 99999999998 4334433
Q ss_pred --CCccccceeEEEecCCCCceeecccccccccCcccccccCCC----------------CCCceecCcchHHHHHHHHH
Q 012253 161 --RPTGGAAAVAMLIGPDAPIAFESKLRGSHMSHAYDFYKPNLA----------------SEYPVVDGKLSQTCYLMALD 222 (467)
Q Consensus 161 --~~t~GdGAvA~Ll~~~~~~~~~~~~~~~~~~~~~df~~p~~~----------------~~~~~vdG~~s~~~y~~a~~ 222 (467)
..+|||||+|+||++++...+..-...+.......++.|..+ ..+..++|+.......+.+.
T Consensus 168 ~~~~lfGDGA~A~vl~~~~~~~~~~~~~~s~g~~~~~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~ 247 (354)
T 4efi_A 168 STSLLFGDAGTMTALETSNGDAAAHFIIGADGKGARNLIVPSGGFKPYDAAADERMAGKSPECLFMDGGEIFNFTLNAVP 247 (354)
T ss_dssp HHHTTBCCEEEEEEEEECCSCCEEEEEEEECGGGGGGEECCSSSSSCCCGGGCGGGTTCCTTSCEECHHHHHHHHHHHHH
T ss_pred ccccccccceeEEEEeecCCCCceEEEEEEcCCCcceEEecCCCCCCCccccccccccccccceEEccHHHHHHHHHHHH
Confidence 368999999999998764211000111111111112222111 12456777655333344444
Q ss_pred HHHHHHHHHHHhhhcCCCCccccceeccCCchHHHHHHHHHhhhhhhhccccCchhhHHhhhcCCCCCCCcchhhhhhhH
Q 012253 223 SCYKYFCQKFEKLEGRQFSMLDVDYFVFHSPYNKLVQKSFARLFFNDFLRNASSVDEIAKEKLAPYSTLSDVESYQSRDL 302 (467)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~d~d~~i~H~p~~k~~~k~~~~l~~~~~~~~~~~~~~~~~~~l~~~~g~~~e~~~~~~~~ 302 (467)
.+++.++++ ++++++|||+|++||++.++++.+.++| |+++++.+.
T Consensus 248 ~~i~~~l~~------~gl~~~did~~v~Hq~~~~i~~~~~~~L------------------------gl~~ek~~~---- 293 (354)
T 4efi_A 248 KLVSRTLDI------AGRDKDSYDAFLFHQANLFMLKHLAKKA------------------------GLPAERVPV---- 293 (354)
T ss_dssp HHHHHHHHH------HTCCGGGCSEEEECCCCHHHHHHHHHHT------------------------TCCGGGSCC----
T ss_pred HHHHHHHHH------cCCCHHHCCEEEeCCCCHHHHHHHHHHh------------------------CcCHHHHHH----
Confidence 445444443 4799999999999999999999999888 788876431
Q ss_pred HHHHHHHHHHHhhhhcCCCcccccccCccccchHHHHHHHHHhhcCcCCCCCEEEEEEeccccceeeEEEEEec
Q 012253 303 EKASQQVAKQLYDLKVQPSTLIPKQVGNMYTASLYAAFASLLHEKHSSLEGKRVIMFSYGSGLTATMFSLQLQE 376 (467)
Q Consensus 303 ~k~~~~~~~~~~~~~~~~s~~~~~~~GN~~taS~~l~L~~~l~~~~~~~~G~~ill~syGsG~~~~~~~~~~~~ 376 (467)
..+++|||++||+|++|.+++++ +++++|++|+|++||+|++|++.+++|.+
T Consensus 294 ---------------------~l~~~GNt~sasi~~~L~~~~~~-g~~~~Gd~vll~~fG~G~t~~~~ll~~~~ 345 (354)
T 4efi_A 294 ---------------------NIGEYGNTSCASIPLLITTELKD-RLKEETLQLGMFGFGVGYSWASAALAVGP 345 (354)
T ss_dssp ---------------------CHHHHCBCGGGHHHHHHHHHSHH-HHHHSCEEEEEEEEETTTEEEEEEEEECC
T ss_pred ---------------------HHhhhCcHHHHHHHHHHHHHHHh-CCCCCCCEEEEEEEchhhhheeeEEEECC
Confidence 12799999999999999999998 67889999999999999999999999987
|
| >3gwa_A 3-oxoacyl-(acyl-carrier-protein) synthase III; structural genomics, synthetase; 1.60A {Burkholderia pseudomallei} PDB: 3gwe_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-47 Score=385.92 Aligned_cols=309 Identities=15% Similarity=0.173 Sum_probs=245.0
Q ss_pred CCCceeEEeEEEEecCCceeehhHHhhhh-CCCcCeeE--EeccceEeeccCCCCCHHHHHHHHHHHHHHHcCCCcCCcC
Q 012253 4 WHPKNVGILALDIYFPPTCVLQEALEVHD-GVSKGKYT--VGLGQDCMAFCSEVEDVISMSLTVVTSLLEKYKIDPTQIG 80 (467)
Q Consensus 4 ~~~~~vgI~ai~~y~P~~~v~~~el~~~~-g~~~~k~~--~Gig~r~~av~~~~Ed~~~ma~~Aa~~aL~~agi~~~~Id 80 (467)
++.++++|.+++.|+|+++|+++|+++.. +.+.+|+. +||.+|+ ++.++|++.+|+++|+++||+++|++|++||
T Consensus 26 ~~~~~v~I~gig~~lP~~~v~n~~l~~~~~~~~~~~i~~~tGI~~R~--~a~~~~~~~~La~~Aa~~aL~~ag~~~~~Id 103 (365)
T 3gwa_A 26 AHPPRAAIADIAGHLPEQVLTNDVLAQLYPDWPAEKILAKTGIRERR--IAAPRETAADLAYEAARKLFAQGAVGADQVD 103 (365)
T ss_dssp ---CEEEEEEEEEECCSEEEEHHHHHHHCTTCCHHHHHHHHCCCEEE--ECCTTCCHHHHHHHHHHHHHHTTSCCGGGCC
T ss_pred ceeccEEEEEEEEeCCCcEEcHHHHHHHccCCCHHHHHHhcCccEEE--ECCCCCCHHHHHHHHHHHHHHHcCCCHHHCC
Confidence 45678999999999999999999999988 67777873 5777776 5578999999999999999999999999999
Q ss_pred EEEEEeccCCCCCCcHHHHHHHHhcccCCCCeeEEeeCCcChHHHHHHHHHHHHHHhCCCCCCEEEEEEeecc-cccCCC
Q 012253 81 RLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDSA-VYAEGP 159 (467)
Q Consensus 81 ~Li~~Tes~~~~~ps~a~~v~~~Lgl~G~~~~~~~di~~aC~gg~~AL~~A~~~l~a~~~~~~~aLVV~sD~~-~y~~~~ 159 (467)
.||++|+++++..|+++.+|+..||+ ++++.++|++++|+|++.||.+|..+|++|.. ++||||++|.+ ...++.
T Consensus 104 ~vi~~t~~~~~~~p~~a~~v~~~lGl--~~~~~~~~v~~~C~s~~~Al~~A~~~i~~g~~--~~vLvvg~e~~s~~~~~~ 179 (365)
T 3gwa_A 104 FVILCTQAPDYVLPTSACMLQHRLGI--PTHAGALDVNLGCSGYVYGLSLAKGLVETGAA--RCVLLLTADTYSKYLHPL 179 (365)
T ss_dssp EEEEEESSCSCSBSCHHHHHHHHTTC--CTTSEEEEEECSTTHHHHHHHHHHHHHHTTSC--SEEEEEEEECGGGGSCTT
T ss_pred EEEEEeCCCCCCCCcHHHHHHHHcCC--CCCceEEEecccChHHHHHHHHHHHHHHcCCC--CEEEEEEEchhhccCCcc
Confidence 99999999988899999999999998 55899999999999999999999999999955 99999999998 333443
Q ss_pred C---CCccccceeEEEecCCCC----c-eeecccccccccCc----ccccccCC-----------C----CCCceecCcc
Q 012253 160 A---RPTGGAAAVAMLIGPDAP----I-AFESKLRGSHMSHA----YDFYKPNL-----------A----SEYPVVDGKL 212 (467)
Q Consensus 160 ~---~~t~GdGAvA~Ll~~~~~----~-~~~~~~~~~~~~~~----~df~~p~~-----------~----~~~~~vdG~~ 212 (467)
+ ..+|||||+|+||++++. + .+.....+.+.... ..+..|.. + ..+..++|+.
T Consensus 180 dr~~~~lfGDGAaA~vl~~~~~~~~~i~~~~~~s~g~~~~~~~~~~gg~~~p~~~~~~~~~~~~~~~~~~~~~~~m~g~~ 259 (365)
T 3gwa_A 180 DKSVRTLFGDGASATAVIAEHGELERIGPFVFGTDGRGAPNLIVKAGLFREPKSADSAREHEDASGNVRTDEHLYMNGAE 259 (365)
T ss_dssp CHHHHTTBCCEEEEEEEEEECSSSCSEEEEEEEECGGGGGGEEECSSSSSSCCCTGGGCCEECTTSCEECTTSEEECHHH
T ss_pred cccccccccceeEEEEEEecCCCCCceEEEEEEEcCCCCCeEEecCCCcCCCCcccccccccccccccccccceEeccHH
Confidence 3 467999999999998653 1 11111111111100 01111210 0 1245677766
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhcCCCCccccceeccCCchHHHHHHHHHhhhhhhhccccCchhhHHhhhcCCCCCCC
Q 012253 213 SQTCYLMALDSCYKYFCQKFEKLEGRQFSMLDVDYFVFHSPYNKLVQKSFARLFFNDFLRNASSVDEIAKEKLAPYSTLS 292 (467)
Q Consensus 213 s~~~y~~a~~~~~~~~~~~~~~~~~~~~~~~d~d~~i~H~p~~k~~~k~~~~l~~~~~~~~~~~~~~~~~~~l~~~~g~~ 292 (467)
......+.+..+++.++++ ++++++|||+|++||++.++++.+.++| +++
T Consensus 260 v~~~~~~~~~~~i~~~L~~------~gl~~~did~~v~Hq~n~~i~~~~~~~L------------------------gl~ 309 (365)
T 3gwa_A 260 VMAFSLAEVPRAADRLLAL------AGEPRENIDCFVLHQANRFMLDALRKKM------------------------KIP 309 (365)
T ss_dssp HHHHHHHHHHHHHHHHHHH------HTCCGGGCSEEEECCCCHHHHHHHHHHH------------------------TCC
T ss_pred HHHHHHHHHHHHHHHHHHH------cCCCHHHCCEEEEcCCCHHHHHHHHHHh------------------------CCC
Confidence 5443444444555554444 4799999999999999999999999988 788
Q ss_pred cchhhhhhhHHHHHHHHHHHHhhhhcCCCcccccccCccccchHHHHHHHHHhhcCcCCCCCEEEEEEeccccceeeEEE
Q 012253 293 DVESYQSRDLEKASQQVAKQLYDLKVQPSTLIPKQVGNMYTASLYAAFASLLHEKHSSLEGKRVIMFSYGSGLTATMFSL 372 (467)
Q Consensus 293 ~e~~~~~~~~~k~~~~~~~~~~~~~~~~s~~~~~~~GN~~taS~~l~L~~~l~~~~~~~~G~~ill~syGsG~~~~~~~~ 372 (467)
+|+.+ ...+++|||++||+|++|.+++++ +++++|++|+|++||+|++|++.++
T Consensus 310 ~ek~~-------------------------~~l~~~GNtssAsipl~L~~~~~~-g~~~~Gd~vll~~fG~G~t~~~~ll 363 (365)
T 3gwa_A 310 EHKFP-------------------------VLMEHCGNTVSSTLPLALETMRAN-GTLARGMRLMLLGFGVGYSWAGCLV 363 (365)
T ss_dssp GGGSC-------------------------CCCTTTCBCGGGHHHHHHHHHHHT-TCCCTTCEEEEEEEETTTEEEEEEE
T ss_pred HHHHH-------------------------HHHhcccchHHHHHHHHHHHHHHc-CCCCCCCEEEEEEEehhheeEEEEE
Confidence 87642 123799999999999999999998 8899999999999999999999999
Q ss_pred EE
Q 012253 373 QL 374 (467)
Q Consensus 373 ~~ 374 (467)
+|
T Consensus 364 ~~ 365 (365)
T 3gwa_A 364 NF 365 (365)
T ss_dssp EC
T ss_pred EC
Confidence 87
|
| >4dfe_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; ssgcid, seattle structural genomics center for infectious DI transferase; 2.35A {Burkholderia xenovorans} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-47 Score=381.29 Aligned_cols=303 Identities=18% Similarity=0.195 Sum_probs=247.7
Q ss_pred CceeEEeEEEEecCCceeehhHHhhh-----hCCCcCeeE--EeccceEeeccCCCCCHHHHHHHHHHHHHHHcCCCcCC
Q 012253 6 PKNVGILALDIYFPPTCVLQEALEVH-----DGVSKGKYT--VGLGQDCMAFCSEVEDVISMSLTVVTSLLEKYKIDPTQ 78 (467)
Q Consensus 6 ~~~vgI~ai~~y~P~~~v~~~el~~~-----~g~~~~k~~--~Gig~r~~av~~~~Ed~~~ma~~Aa~~aL~~agi~~~~ 78 (467)
.|+++|.+++.|+|+++++++++++. .+.+.+|+. +||++|+ ++.++|+..+|+++|++++|+++|++|++
T Consensus 9 ~m~v~I~g~g~~lP~~~v~~~~l~~~l~~~~~~~~~~~i~~rtgi~~r~--~~~~~~~~~~la~~Aa~~al~~ag~~~~~ 86 (333)
T 4dfe_A 9 TIYSRVLGTGSYLPPNRVTNQDLAKRLAEQGIETSDEWIVARTGIHARY--FAEPDVTTSDLAFIASQRAIEAADIDPQS 86 (333)
T ss_dssp CCEEEEEEEEEECCSEEEEHHHHHHHHC---CCCCHHHHHHHHCCSEEE--ECCTTCCHHHHHHHHHHHHHHHHTCCGGG
T ss_pred ccceEEEEEEEECCCcEEcHHHHHHHhccccCCCCHHHhHHhcCceEEE--EcCCCCCHHHHHHHHHHHHHHHcCCCHHH
Confidence 36899999999999999999999998 455567763 5777766 55778999999999999999999999999
Q ss_pred cCEEEEEeccCCCCCCcHHHHHHHHhcccCCCCeeEEeeCCcChHHHHHHHHHHHHHHhCCCCCCEEEEEEeecc-cccC
Q 012253 79 IGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDSA-VYAE 157 (467)
Q Consensus 79 Id~Li~~Tes~~~~~ps~a~~v~~~Lgl~G~~~~~~~di~~aC~gg~~AL~~A~~~l~a~~~~~~~aLVV~sD~~-~y~~ 157 (467)
||.||++|+++++..|+++.+|++.||+ ++++.+++++++|+|++.||..|..+|++|.. ++||||++|.+ ...+
T Consensus 87 Id~vi~~t~~~~~~~p~~a~~v~~~lgl--~~~~~~~~v~~~C~s~~~al~~A~~~i~~g~~--~~vLvvg~e~~s~~~~ 162 (333)
T 4dfe_A 87 IDLIIVATSTPDFVFPSTACLLQNKLGI--RNHGAAFDVQAVCSGFAYAVATADSFIRSGQH--RTALVIGAETFSRILD 162 (333)
T ss_dssp CCEEEEECSSCSSSBSCHHHHHHHHTTC--CSCCEEEEEECGGGHHHHHHHHHHHHHHTTSC--SEEEEEEEEEGGGGCC
T ss_pred CCEEEEEeCCCCCCCCcHHHHHHHHhCC--CCCCcEEEeCcccHHHHHHHHHHHHHHHcCCC--CEEEEEEeeccccccC
Confidence 9999999999998899999999999998 67899999999999999999999999999954 99999999998 3333
Q ss_pred CC---CCCccccceeEEEecCCCC--c-eeecccccccccCcccccc-cCC-------CCCCceecCcchHHHHHHHHHH
Q 012253 158 GP---ARPTGGAAAVAMLIGPDAP--I-AFESKLRGSHMSHAYDFYK-PNL-------ASEYPVVDGKLSQTCYLMALDS 223 (467)
Q Consensus 158 ~~---~~~t~GdGAvA~Ll~~~~~--~-~~~~~~~~~~~~~~~df~~-p~~-------~~~~~~vdG~~s~~~y~~a~~~ 223 (467)
+. ...+|||||+|+||++.+. + .+.....+. ..+.++ |.. ...+..++|+.+...+.+.+..
T Consensus 163 ~~d~~~~~lfGDGA~A~vl~~~~~~~i~~~~~~~~g~----~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~ 238 (333)
T 4dfe_A 163 FKDRTTCVLFGDGAGAVILQASDEPGVLASALHADGS----HSNILCTPGNVNGGVVSGSAFLHMDGQAVFKLAVNVLEK 238 (333)
T ss_dssp TTCTTTTTTBCEEEEEEEEEEESSCSEEEEEEEECGG----GGGGEEBCEEEETTEEEECCSCEECHHHHHHHHHHHHHH
T ss_pred cccccceeeeccccEEEEEEEcCCCCeEEEEEEEccC----CcCeEEECCCCCCcccccCcceeeccHHHHHHHHHHHHH
Confidence 33 2467999999999997653 1 111111111 122222 110 1235678888876666666666
Q ss_pred HHHHHHHHHHhhhcCCCCccccceeccCCchHHHHHHHHHhhhhhhhccccCchhhHHhhhcCCCCCCCcchhhhhhhHH
Q 012253 224 CYKYFCQKFEKLEGRQFSMLDVDYFVFHSPYNKLVQKSFARLFFNDFLRNASSVDEIAKEKLAPYSTLSDVESYQSRDLE 303 (467)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~d~d~~i~H~p~~k~~~k~~~~l~~~~~~~~~~~~~~~~~~~l~~~~g~~~e~~~~~~~~~ 303 (467)
+++.++++ ++++++|||+|++||++.++++.+.++| ++++++.+.
T Consensus 239 ~i~~~l~~------~gl~~~did~~~~Hq~~~~i~~~~~~~l------------------------gl~~~~~~~----- 283 (333)
T 4dfe_A 239 VAVEALEK------ANLSAEQIDWLIPHQANIRIMQSTCRKL------------------------GLPQERMIV----- 283 (333)
T ss_dssp HHHHHHHH------TTCCGGGCSEEEECCSCHHHHHHHHHHT------------------------TCCGGGBCC-----
T ss_pred HHHHHHHH------cCCCHHHCCEEEEcCCCHHHHHHHHHHh------------------------CCCHHHhhh-----
Confidence 66655544 4799999999999999999999999888 788776431
Q ss_pred HHHHHHHHHHhhhhcCCCcccccccCccccchHHHHHHHHHhhcCcCCCCCEEEEEEeccccceeeEEEEE
Q 012253 304 KASQQVAKQLYDLKVQPSTLIPKQVGNMYTASLYAAFASLLHEKHSSLEGKRVIMFSYGSGLTATMFSLQL 374 (467)
Q Consensus 304 k~~~~~~~~~~~~~~~~s~~~~~~~GN~~taS~~l~L~~~l~~~~~~~~G~~ill~syGsG~~~~~~~~~~ 374 (467)
..+++|||++||+|++|.+++++ +++++|++|+|++||+|++|++.+++|
T Consensus 284 --------------------~l~~~GNt~sasi~~~L~~~~~~-g~~~~Gd~vll~~~G~G~t~~~~ll~~ 333 (333)
T 4dfe_A 284 --------------------TVGEHGNTSAASIPLALDVAVRD-GRIKRGQNVLIEGVGGGFTWGASVIRY 333 (333)
T ss_dssp --------------------CHHHHCBCGGGHHHHHHHHHHHT-TCSCTTCEEEEEEEETTTEEEEEEEEC
T ss_pred --------------------hHHhcCchHHHHHHHHHHHHHHc-CCCCCCCEEEEEEEchhheeEEEEEEC
Confidence 22789999999999999999998 788999999999999999999999987
|
| >3h78_A PQS biosynthetic enzyme; PQSD, anthranilic acid, anthraniloyl-COA, transferase; HET: BE2; 1.70A {Pseudomonas aeruginosa PAO1} PDB: 3h76_A 3h77_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-46 Score=380.49 Aligned_cols=304 Identities=16% Similarity=0.135 Sum_probs=246.9
Q ss_pred ceeEEeEEEEecCCceeehhHHhhhhCCCcCeeE--EeccceEeeccCCCCCHHHHHHHHHHHHHHHcCCCcCCcCEEEE
Q 012253 7 KNVGILALDIYFPPTCVLQEALEVHDGVSKGKYT--VGLGQDCMAFCSEVEDVISMSLTVVTSLLEKYKIDPTQIGRLEV 84 (467)
Q Consensus 7 ~~vgI~ai~~y~P~~~v~~~el~~~~g~~~~k~~--~Gig~r~~av~~~~Ed~~~ma~~Aa~~aL~~agi~~~~Id~Li~ 84 (467)
++++|.+++.|+|+++++++++++..+.+++|+. +||.+|+ ++.++|++.+|+++|+++||+++|++|++||.||+
T Consensus 24 ~~~~I~~~g~~~P~~~v~~~~l~~~~~~~~~~i~~~tGi~~R~--~a~~~~~~~~La~~Aa~~aL~~agl~~~dId~vi~ 101 (359)
T 3h78_A 24 GNPILAGLGFSLPKRQVSNHDLVGRINTSDEFIVERTGVRTRY--HVEPEQAVSALMVPAARQAIEAAGLLPEDIDLLLV 101 (359)
T ss_dssp CCCEEEEEEEECCSEEEEHHHHTTTSSCCHHHHHHHHCCCEEE--ECCTTCCTHHHHHHHHHHHHHHTTCCGGGCCEEEE
T ss_pred CCcEEEEEEEECCCceEcHHHHHHHhCCCHHHHHHhcCceEEE--EcCCCCCHHHHHHHHHHHHHHhcCCCHHHCCEEEE
Confidence 5799999999999999999999999998888874 5666665 55788999999999999999999999999999999
Q ss_pred EeccCCCCCCcHHHHHHHHhcccCCCCeeEEeeCCcChHHHHHHHHHHHHHHhCCCCCCEEEEEEeecc-cccCCCC--C
Q 012253 85 GSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDSA-VYAEGPA--R 161 (467)
Q Consensus 85 ~Tes~~~~~ps~a~~v~~~Lgl~G~~~~~~~di~~aC~gg~~AL~~A~~~l~a~~~~~~~aLVV~sD~~-~y~~~~~--~ 161 (467)
+|+++++..|+++.+|++.||+ +++.++|++++|+|++.||.+|..+|++|.. ++||||++|.+ +..++.+ +
T Consensus 102 ~t~~~~~~~p~~a~~v~~~lGl---~~~~~~~v~~aC~s~~~Al~~A~~~i~sG~~--~~vLvvg~e~~S~~~~~~d~~~ 176 (359)
T 3h78_A 102 NTLSPDHHDPSQACLIQPLLGL---RHIPVLDIRAQASGLLYGLQMARGQILAGLA--RHVLVVCGEVLSKRMDCSDRGR 176 (359)
T ss_dssp ECSSCSSSBSCHHHHHHHHHTC---CSCCEEEEECGGGHHHHHHHHHHHHHHTTSC--SEEEEEEEEECGGGCCCSTTTH
T ss_pred EeCCCCCCCCcHHHHHHHHcCC---CCCcEEEECCHhHHHHHHHHHHHHHHHCCCc--CEEEEEEEchhcccCCcccccc
Confidence 9999988899999999999998 5789999999999999999999999999955 99999999998 4444433 2
Q ss_pred ---CccccceeEEEecCCCC--c---eeecccccccccCcccccc------cC-------CCCCCceecCcchHHHHHHH
Q 012253 162 ---PTGGAAAVAMLIGPDAP--I---AFESKLRGSHMSHAYDFYK------PN-------LASEYPVVDGKLSQTCYLMA 220 (467)
Q Consensus 162 ---~t~GdGAvA~Ll~~~~~--~---~~~~~~~~~~~~~~~df~~------p~-------~~~~~~~vdG~~s~~~y~~a 220 (467)
..|||||+|+||++++. . .+.....+.+.. ...+.. |. ....|..++|+.+...+.+.
T Consensus 177 ~t~~lfGDGAaA~vl~~~~~~~~~i~~~~~~s~g~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~g~~v~~~~~~~ 255 (359)
T 3h78_A 177 NLSILLGDGAGAVVVSAGESLEDGLLDLRLGADGNYFD-LLMTAAPGSASPTFLDENVLREGGGEFLMRGRPMFEHASQT 255 (359)
T ss_dssp HHHTTBCEEEEEEEEECCSCSSSEEEEEEEEECGGGGG-GEEBCCSSTTSSSTTCHHHHHTTTTSCEECHHHHHHHHHHH
T ss_pred cccceecceeEEEEEEecCCCCCceEEEEEEEccCccc-eEEeCCCCCccCCccccccccccCCceEeccHHHHHHHHHH
Confidence 56999999999998752 1 111111122111 111111 10 11235677888776666666
Q ss_pred HHHHHHHHHHHHHhhhcCCCCccccceeccCCchHHHHHHHHHhhhhhhhccccCchhhHHhhhcCCCCCCCcchhhhhh
Q 012253 221 LDSCYKYFCQKFEKLEGRQFSMLDVDYFVFHSPYNKLVQKSFARLFFNDFLRNASSVDEIAKEKLAPYSTLSDVESYQSR 300 (467)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~d~d~~i~H~p~~k~~~k~~~~l~~~~~~~~~~~~~~~~~~~l~~~~g~~~e~~~~~~ 300 (467)
+..+++.++++ ++++++|||+|++||++.++++.+.++| ++++++.+.
T Consensus 256 ~~~~i~~~L~~------~gl~~~did~~v~Hq~n~~i~~~~~~~l------------------------gl~~ek~~~-- 303 (359)
T 3h78_A 256 LVRIAGEMLAA------HELTLDDIDHVICHQPNLRILDAVQEQL------------------------GIPQHKFAV-- 303 (359)
T ss_dssp HHHHHHHHHHH------TTCCGGGCSEEEECCSCHHHHHHHHHHH------------------------TCCGGGBCC--
T ss_pred HHHHHHHHHHH------cCCCHHHCCEEEECCCCHHHHHHHHHHh------------------------CcCHHHhhh--
Confidence 66666665544 4799999999999999999999999888 788876531
Q ss_pred hHHHHHHHHHHHHhhhhcCCCcccccccCccccchHHHHHHHHHhhcCcCCCCCEEEEEEeccccceeeEEEEEec
Q 012253 301 DLEKASQQVAKQLYDLKVQPSTLIPKQVGNMYTASLYAAFASLLHEKHSSLEGKRVIMFSYGSGLTATMFSLQLQE 376 (467)
Q Consensus 301 ~~~k~~~~~~~~~~~~~~~~s~~~~~~~GN~~taS~~l~L~~~l~~~~~~~~G~~ill~syGsG~~~~~~~~~~~~ 376 (467)
..+++|||++||+|++|.+++++ +++|++|+|++||+|++|++++++|.+
T Consensus 304 -----------------------~l~~~GNt~sAsi~l~L~~~~~~---l~~Gd~vll~~fG~G~t~~~~ll~~~~ 353 (359)
T 3h78_A 304 -----------------------TVDRLGNMASASTPVTLAMFWPD---IQPGQRVLVLTYGSGATWGAALYRKPE 353 (359)
T ss_dssp -----------------------CHHHHCBCGGGHHHHHHHHHGGG---SCTTCEEEEEEEETTTEEEEEEEECC-
T ss_pred -----------------------hhhcccchHHHHHHHHHHHHHHh---CCCCCEEEEEEEchhhhheeeeEEehh
Confidence 12799999999999999999986 689999999999999999999999976
|
| >3s21_A 3-oxoacyl-[ACP] synthase III; non-decarboxylative claisen condensation reaction, transfera; HET: CER; 1.70A {Xanthomonas campestris PV} PDB: 3s23_A* 3row_A 3s1z_A 3s20_A* 3fk5_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-46 Score=379.16 Aligned_cols=306 Identities=18% Similarity=0.162 Sum_probs=243.7
Q ss_pred CCCceeEEeEEEEecCCceeehhHHhhhh-------CCCcCeeE--EeccceEeeccCCCCCHHHHHHHHHHHHHHHcCC
Q 012253 4 WHPKNVGILALDIYFPPTCVLQEALEVHD-------GVSKGKYT--VGLGQDCMAFCSEVEDVISMSLTVVTSLLEKYKI 74 (467)
Q Consensus 4 ~~~~~vgI~ai~~y~P~~~v~~~el~~~~-------g~~~~k~~--~Gig~r~~av~~~~Ed~~~ma~~Aa~~aL~~agi 74 (467)
++.++|+|.+++.|+|+++|+++|+++.. +.+++|+. +||.+|+ ++++++++.+|+++|++++|+++|+
T Consensus 8 m~~~~v~I~~~g~~lP~~~v~n~~l~~~~~~~~~~~~~~~~~i~~~tGi~~R~--~~~~~~~~~~La~~Aa~~al~~ag~ 85 (345)
T 3s21_A 8 MLFQNVSIAGLAHIDAPHTLTSKEINERLQPTYDRLGIKTDVLGDVAGIHARR--LWDQDVQASDAATQAARKALIDANI 85 (345)
T ss_dssp GSCSSEEEEEEEEEECSEEEEHHHHHHHHHHHHHHHTCCCCHHHHTTCCSEEE--ECSSCCCHHHHHHHHHHHHHHHHTC
T ss_pred ceecceEEEEEEEeCCCcEEcHHHHHHHHhhcccccCCCHHHHHHhhCceeEE--ECCCCCCHHHHHHHHHHHHHHHcCC
Confidence 45678999999999999999999998864 67788884 5666665 5588999999999999999999999
Q ss_pred CcCCcCEEEEEeccCCCCCCcHHHHHHHHhcccCCCCeeEEeeCCcChHHHHHHHHHHHHHHhCCCCCCEEEEEEeecc-
Q 012253 75 DPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDSA- 153 (467)
Q Consensus 75 ~~~~Id~Li~~Tes~~~~~ps~a~~v~~~Lgl~G~~~~~~~di~~aC~gg~~AL~~A~~~l~a~~~~~~~aLVV~sD~~- 153 (467)
+|++||.||++|+++++..|+++.+|++.||+ ++++.+++++++|+|++.||..|..+|++|.. ++||||++|.+
T Consensus 86 ~~~~Id~vi~~t~~~~~~~p~~a~~v~~~lGl--~~~~~~~~v~~aC~s~~~al~~A~~~i~~g~~--~~vLvvg~e~~s 161 (345)
T 3s21_A 86 GIEKIGLLINTSVSRDYLEPSTASIVSGNLGV--SDHCMTFDVANACLAFINGMDIAARMLERGEI--DYALVVDGETAN 161 (345)
T ss_dssp CGGGCCEEEECCSCCSCSSSCHHHHHHHHHTC--CTTCEEEECCCGGGHHHHHHHHHHHHHHHTSC--SEEEEEEEECCH
T ss_pred CHHHCCEEEEEeCCCCCCCChHHHHHHHHhCC--CCCceEEeECCcCHHHHHHHHHHHHHHHCCCC--CEEEEEEEcccc
Confidence 99999999999999998899999999999998 55799999999999999999999999999955 99999999998
Q ss_pred cc---c------CC-C--------CCCccccceeEEEecCCCC----ceeecccccccccCcccccccCCCCCCceecCc
Q 012253 154 VY---A------EG-P--------ARPTGGAAAVAMLIGPDAP----IAFESKLRGSHMSHAYDFYKPNLASEYPVVDGK 211 (467)
Q Consensus 154 ~y---~------~~-~--------~~~t~GdGAvA~Ll~~~~~----~~~~~~~~~~~~~~~~df~~p~~~~~~~~vdG~ 211 (467)
.. . +. + ...++||||+|+||++.+. ..+......+.. +..+++++.. .+..+||+
T Consensus 162 ~~~~~~~~~~~~~~~~~~~f~~~~~~~~~GdGA~A~vl~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~--~~~~~~g~ 238 (345)
T 3s21_A 162 LVYEKTLERMTSPDVTEEEFRNELAALTLGCGAAAMVMARSELVPDAPRYKGGVTRSAT-EWNKLCRGNL--DRMVTDTR 238 (345)
T ss_dssp HHHHHHHHHHTCTTCCHHHHHHHHGGGGBCCEEEEEEEEEGGGSTTSCEEEEEEEEECG-GGTTC-------------CH
T ss_pred hhhccccccccCCccchhhhhhhccceeeccceeEEEEecCCCCCCCcceeeeccccCc-chhhhccccC--cceEEcHH
Confidence 21 1 11 1 1357899999999997652 122111111111 2244555432 23568898
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhhhcCCCCccccceeccCCchHHHHHHHHHhhhhhhhccccCchhhHHhhhcCCCCCC
Q 012253 212 LSQTCYLMALDSCYKYFCQKFEKLEGRQFSMLDVDYFVFHSPYNKLVQKSFARLFFNDFLRNASSVDEIAKEKLAPYSTL 291 (467)
Q Consensus 212 ~s~~~y~~a~~~~~~~~~~~~~~~~~~~~~~~d~d~~i~H~p~~k~~~k~~~~l~~~~~~~~~~~~~~~~~~~l~~~~g~ 291 (467)
.....+.+.+..+++.++++ ++++++|||+|++||++.++++.+.++| |+
T Consensus 239 ~v~~~~~~~~~~~i~~~l~~------~gl~~~did~~v~Hq~~~~i~~~~~~~l------------------------gl 288 (345)
T 3s21_A 239 LLLIEGIKLAQKTFVAAKQV------LGWAVEELDQFVIHQVSRPHTAAFVKSF------------------------GI 288 (345)
T ss_dssp HHHHHHHHHHHHHHHHHHHH------HCCCGGGCSEEEECCSCHHHHHHHHHHH------------------------TC
T ss_pred HHHHHHHHHHHHHHHHHHHH------cCCCHHHCCEEEeCCCCHHHHHHHHHHc------------------------Cc
Confidence 77666666666666665554 4799999999999999999999999888 78
Q ss_pred CcchhhhhhhHHHHHHHHHHHHhhhhcCCCcccccccCccccchHHHHHHHHHhhcCcCCCCCEEEEEEeccccceeeEE
Q 012253 292 SDVESYQSRDLEKASQQVAKQLYDLKVQPSTLIPKQVGNMYTASLYAAFASLLHEKHSSLEGKRVIMFSYGSGLTATMFS 371 (467)
Q Consensus 292 ~~e~~~~~~~~~k~~~~~~~~~~~~~~~~s~~~~~~~GN~~taS~~l~L~~~l~~~~~~~~G~~ill~syGsG~~~~~~~ 371 (467)
++++.+ ...+++|||++||+|++|.+++++ +++++|++|+|++||+|++|++++
T Consensus 289 ~~ek~~-------------------------~~l~~~GNt~sasi~~~L~~~~~~-g~~~~Gd~vll~~~G~G~t~~~~~ 342 (345)
T 3s21_A 289 DPAKVM-------------------------TIFGEHGNIGPASVPIVLSKLKEL-GRLKKGDRIALLGIGSGLNCSMAE 342 (345)
T ss_dssp CGGGBC-------------------------CCHHHHCBCGGGHHHHHHHHHHHH-TCCCTTCEEEEEEEETTTEEEEEE
T ss_pred CHHHce-------------------------eeHhhcCchHHHHHHHHHHHHHHc-CCCCCCCEEEEEEEChhhhheEEE
Confidence 877542 112799999999999999999999 889999999999999999999999
Q ss_pred EEE
Q 012253 372 LQL 374 (467)
Q Consensus 372 ~~~ 374 (467)
++|
T Consensus 343 l~w 345 (345)
T 3s21_A 343 VVW 345 (345)
T ss_dssp EEC
T ss_pred EEC
Confidence 987
|
| >3il6_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, fatty acid biosynthesis, antibiotic, acyltransferase, cytoplasm, lipid synthesis; HET: B83; 2.50A {Enterococcus faecalis} PDB: 3il5_A* 3il4_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-46 Score=371.52 Aligned_cols=299 Identities=19% Similarity=0.204 Sum_probs=236.9
Q ss_pred ceeEEeEEEEecCCceeehhHHhhhhCCCcCeeE--EeccceEeeccCCCCCHHHHHHHHHHHHHHHcCCCcCCcCEEEE
Q 012253 7 KNVGILALDIYFPPTCVLQEALEVHDGVSKGKYT--VGLGQDCMAFCSEVEDVISMSLTVVTSLLEKYKIDPTQIGRLEV 84 (467)
Q Consensus 7 ~~vgI~ai~~y~P~~~v~~~el~~~~g~~~~k~~--~Gig~r~~av~~~~Ed~~~ma~~Aa~~aL~~agi~~~~Id~Li~ 84 (467)
++++|.+++.|+|+++|+++|+++..+.+.+|+. +||.+|+ ++.++| +.+|+++|+++||+++|++|++||.||+
T Consensus 3 ~~~~I~~~g~~lP~~~v~n~~~~~~~~~~~~~i~~~~Gi~~R~--~a~~~e-~~~La~~Aa~~aL~~ag~~~~~Id~li~ 79 (321)
T 3il6_A 3 NYARISCTSRYVPENCVTNHQLSEMMDTSAAWIHSRTGISERR--IVTQEN-TSDLCHQVAKQLLEKSGKQASEIDFILV 79 (321)
T ss_dssp CEEEEEEEEEECCSCEEEHHHHHHHTTSCHHHHHHHHSCSEEE--CCSSCC-HHHHHHHHHHHHHHHHTCCGGGCCEEEE
T ss_pred CcEEEEEEEEECCCcEEcHHHHHHHhCCChhhhhhhcCceEEE--ECCCCC-HHHHHHHHHHHHHHHcCCCHHHCCEEEE
Confidence 6799999999999999999999999998888884 5777776 556677 9999999999999999999999999999
Q ss_pred EeccCCCCCCcHHHHHHHHhcccCCCCeeEEeeCCcChHHHHHHHHHHHHHHhCCCCCCEEEEEEeecc-cccCCCC---
Q 012253 85 GSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDSA-VYAEGPA--- 160 (467)
Q Consensus 85 ~Tes~~~~~ps~a~~v~~~Lgl~G~~~~~~~di~~aC~gg~~AL~~A~~~l~a~~~~~~~aLVV~sD~~-~y~~~~~--- 160 (467)
+|+++++..|+++.+|++.||+ +++.++|++++|+|++.||..|..+|++|.. ++||||++|.+ .+.++.+
T Consensus 80 ~t~~~~~~~p~~a~~v~~~lGl---~~~~~~~v~~aC~s~~~al~~A~~~i~~g~~--~~vLvvg~e~~s~~~~~~dr~~ 154 (321)
T 3il6_A 80 ATVTPDFNMPSVACQVQGAIGA---TEAFAFDISAACSGFVYALSMAEKLVLSGRY--QTGLVIGGETFSKMLDWTDRST 154 (321)
T ss_dssp ECSSCSCSSSCHHHHHHHHTTC---TTCEEEEECCGGGHHHHHHHHHHHHHHTSSC--CCEEEEEEECGGGGSCTTCTTT
T ss_pred EeCCCCcCCCcHHHHHHHHcCC---CCceEEEeCcccHHHHHHHHHHHHHHHCCCC--CEEEEEEEccccccCCcccccc
Confidence 9999998899999999999998 4599999999999999999999999999955 99999999998 3334433
Q ss_pred CCccccceeEEEecCCCCceeecccccccccCcccccccCCC------------CCCceecCcchHHHHHHHHHHHHHHH
Q 012253 161 RPTGGAAAVAMLIGPDAPIAFESKLRGSHMSHAYDFYKPNLA------------SEYPVVDGKLSQTCYLMALDSCYKYF 228 (467)
Q Consensus 161 ~~t~GdGAvA~Ll~~~~~~~~~~~~~~~~~~~~~df~~p~~~------------~~~~~vdG~~s~~~y~~a~~~~~~~~ 228 (467)
..+|||||+|+||++++...+......+.......++.|..+ ..|..++|+.. |..+.+...+.+
T Consensus 155 ~~lfGDGA~A~vl~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v---~~~~~~~~~~~i 231 (321)
T 3il6_A 155 AVLFGDGAAGVLIEAAETPHFLNEKLQADGQRWTALTSGYTINESPFYQGHKQASKTLQMEGRSI---FDFAIKDVSQNI 231 (321)
T ss_dssp GGGBCCEEEEEEEEEESSCCEEEEEEEECGGGGGGEECCCCCCCSTTCCCCCCCCCSCEECHHHH---HHHHHHHHHHHH
T ss_pred ceeeccccEEEEEEEcCCCCEEEEEEEEcCCCCCeEEeCCCCCCCCCCccccccccceeechHHH---HHHHHHHHHHHH
Confidence 467999999999998753111110111111111112222211 22455666543 444444433322
Q ss_pred HHHHHhhhcCCCCccccceeccCCchHHHHHHHHHhhhhhhhccccCchhhHHhhhcCCCCCCCcchhhhhhhHHHHHHH
Q 012253 229 CQKFEKLEGRQFSMLDVDYFVFHSPYNKLVQKSFARLFFNDFLRNASSVDEIAKEKLAPYSTLSDVESYQSRDLEKASQQ 308 (467)
Q Consensus 229 ~~~~~~~~~~~~~~~d~d~~i~H~p~~k~~~k~~~~l~~~~~~~~~~~~~~~~~~~l~~~~g~~~e~~~~~~~~~k~~~~ 308 (467)
.+ + +.++|||+|++||++.++++.+.++| |+|+++.+
T Consensus 232 ~~-~-------l~~~did~~v~Hq~~~~i~~~~~~~l------------------------gl~~ek~~----------- 268 (321)
T 3il6_A 232 LS-L-------VTDETVDYLLLHQANVRIIDKIARKT------------------------KISREKFL----------- 268 (321)
T ss_dssp HT-T-------CCGGGCSEEEECCSCHHHHHHHHHHH------------------------TCCGGGBC-----------
T ss_pred HH-H-------cCcccCCEEEEcCCCHHHHHHHHHHc------------------------CcCHHHhh-----------
Confidence 22 2 23799999999999999999999888 78887642
Q ss_pred HHHHHhhhhcCCCcccccccCccccchHHHHHHHHHhhcCcCCCC--CEEEEEEeccccceeeEEEEE
Q 012253 309 VAKQLYDLKVQPSTLIPKQVGNMYTASLYAAFASLLHEKHSSLEG--KRVIMFSYGSGLTATMFSLQL 374 (467)
Q Consensus 309 ~~~~~~~~~~~~s~~~~~~~GN~~taS~~l~L~~~l~~~~~~~~G--~~ill~syGsG~~~~~~~~~~ 374 (467)
...+++|||++||+|++|.+++++ +++++| ++|++++||+|++|++.++++
T Consensus 269 --------------~~l~~~GNt~sasi~~~L~~~~~~-g~~~~G~~d~vll~~fG~G~t~~~~~l~v 321 (321)
T 3il6_A 269 --------------TNMDKYGNTSAASIPILLDEAVEN-GTLILGSQQRVVLTGFGGGLTWGSLLLTL 321 (321)
T ss_dssp --------------CCGGGTCBCGGGHHHHHHHHHHHT-TSSCTTSCCEEEEEEEETTTEEEEEEEEC
T ss_pred --------------hhHhhcccHHHHHHHHHHHHHHHh-CCCCCCCCCEEEEEEEehhheeEEEEEEC
Confidence 123899999999999999999998 788999 999999999999999999875
|
| >3s3l_A CERJ; acyltransferase, FABH homologue, KS III homologue, dimethyl transfer, transferase; 2.00A {Streptomyces tendae} PDB: 3t5y_A* 3t6s_A* 3t8e_A 3t5y_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-43 Score=356.40 Aligned_cols=304 Identities=16% Similarity=0.142 Sum_probs=227.4
Q ss_pred CCceeEEeEEEEecCCceeehhHHhhhhCCCcCee--EEeccceEeeccCCCC--CHHHHHHHHHHHHHHHcCCCcCCcC
Q 012253 5 HPKNVGILALDIYFPPTCVLQEALEVHDGVSKGKY--TVGLGQDCMAFCSEVE--DVISMSLTVVTSLLEKYKIDPTQIG 80 (467)
Q Consensus 5 ~~~~vgI~ai~~y~P~~~v~~~el~~~~g~~~~k~--~~Gig~r~~av~~~~E--d~~~ma~~Aa~~aL~~agi~~~~Id 80 (467)
+.++|+|.+++.|+|+.+++++++++. ++..+. ++||.+|+ +++++| ++.+|+++|+++||+++|++|++||
T Consensus 2 ~~~~v~I~g~g~ylP~~~~~~~~~~~~--~~~~~~~~~tGi~~r~--~a~~~e~~~~~~La~~Aa~~aL~~ag~~~~dId 77 (357)
T 3s3l_A 2 RWENLFVSGVAAWLPPLSTAQDAVMAG--LLDPARSKLRGIESVT--VASDAEEDAPPRMAARAARAALGRGDVDPADVS 77 (357)
T ss_dssp BCSSCEEEEEEEECCCEEEHHHHHHTT--SSCHHHHHHHCCCEEE--CCCSSGGGSHHHHHHHHHHHHHHHTTCCGGGEE
T ss_pred CcCceEEEEEEEECCCCCCHHHHHHhc--CCcHHHHHHcCceEEE--ecCCCCCCCHHHHHHHHHHHHHHHcCCCHHHCC
Confidence 357899999999999988777776643 333332 35776665 556677 9999999999999999999999999
Q ss_pred EEEEEecc---CCCCCCcHHHHHHHHhcccCCCCeeEEeeCCcChHHHHHHHHHHHHHHhCCCCCC--EEEEEEeeccc-
Q 012253 81 RLEVGSET---VIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAALFNCVNWVESASWDGR--YGLVVCTDSAV- 154 (467)
Q Consensus 81 ~Li~~Tes---~~~~~ps~a~~v~~~Lgl~G~~~~~~~di~~aC~gg~~AL~~A~~~l~a~~~~~~--~aLVV~sD~~~- 154 (467)
.||++|++ ++. ++.+.+|+..||+ +++.+||++++|+|++.||.+|..+|++|.. + +||||++|.+.
T Consensus 78 ~vi~~t~~~~~~d~--~~~a~~v~~~lG~---~~~~~~~v~~aC~~~~~al~~A~~~i~sg~~--~~~~vLvvg~e~~s~ 150 (357)
T 3s3l_A 78 LVLHSSLWFQGIDL--WPAASYVAHEAVG---RHVPAFGLAQRCNGGMGAIELAGAYLGSGIG--AGHAALLTTGDRFAG 150 (357)
T ss_dssp EEEEECSSCCSSSS--SCHHHHHHHHHTC---SSSCEEEEECGGGHHHHHHHHHHHHHHTTSS--SSSEEEEEEEECCCT
T ss_pred EEEEEeccCCCccc--ccHHHHHHHHhCC---CCCcEEEEcCccHHHHHHHHHHHHHHHcCCC--CCCEEEEEEEecccc
Confidence 99999984 433 3679999999997 6799999999999999999999999999965 7 99999999984
Q ss_pred -c-cCCC--CCCccccceeEEEecCCCC-ceeecccccccccCcccccccCC-------C-CCCceecCcchHHHHH---
Q 012253 155 -Y-AEGP--ARPTGGAAAVAMLIGPDAP-IAFESKLRGSHMSHAYDFYKPNL-------A-SEYPVVDGKLSQTCYL--- 218 (467)
Q Consensus 155 -y-~~~~--~~~t~GdGAvA~Ll~~~~~-~~~~~~~~~~~~~~~~df~~p~~-------~-~~~~~vdG~~s~~~y~--- 218 (467)
+ .++. ...+|||||+|+||++++. ..+......+... ..+++++.. . ..+..++|+. .|.
T Consensus 151 ~~~~~~~~~~~~lfGDGA~A~vl~~~~~~~~i~~~~~~s~g~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~---~~~~~~ 226 (357)
T 3s3l_A 151 PRIDRWNSVDVTMYGDGAAALVLSTRDGFARVLSTATGVDNS-LEILARGDEPFAPHPVEPSPVADLGTRT---VRGAEL 226 (357)
T ss_dssp TTCCTTTSSSSCCBCCEEEEEEEESSCCSEEEEEEEEEECGG-GGGGGTTTCCCCSSCCSSCCCCCHHHHH---HHHHHH
T ss_pred cccccccccCCcccccccEEEEEecCCCCCeEEEEEEEEccC-hhhhcccCCCCCCCccCcCCccccccch---hhhhcc
Confidence 2 2333 3578999999999998753 1111101111111 123333221 0 1123344442 232
Q ss_pred --------HHHHHHHHHHHHHHHhhhcCCCCccccceecc-CCchHHHHHHHHHhhhhhhhccccCchhhHHhhhcCCCC
Q 012253 219 --------MALDSCYKYFCQKFEKLEGRQFSMLDVDYFVF-HSPYNKLVQKSFARLFFNDFLRNASSVDEIAKEKLAPYS 289 (467)
Q Consensus 219 --------~a~~~~~~~~~~~~~~~~~~~~~~~d~d~~i~-H~p~~k~~~k~~~~l~~~~~~~~~~~~~~~~~~~l~~~~ 289 (467)
.+++...+.+.+.+ ++++++++|||+|++ ||++.+ ++.+.++|
T Consensus 227 g~~~~~~~~~~~~~~~~i~~~L---~~~gl~~~did~~v~~hq~~~~-~~~~~~~l------------------------ 278 (357)
T 3s3l_A 227 ADLPDLTHRYIDLLVAAKTQAL---EDAGTAIEDIAHAVIPVSRRGT-GHELHDLL------------------------ 278 (357)
T ss_dssp HCCTTHHHHHHHHHHHHHHHHH---HHTTCCGGGCSEEECCSCCCCS-SCCHHHHH------------------------
T ss_pred cchhhhHHHHHHHHHHHHHHHH---HHcCCCHHHCCEEEecCcChHH-HHHHHHHc------------------------
Confidence 22222222222222 556899999999995 999988 88888887
Q ss_pred CCCcchhhhhhhHHHHHHHHHHHHhhhhcCCCcccccccCccccchHHHHHHHHHhhcCcCCCCCEEEEEEeccccceee
Q 012253 290 TLSDVESYQSRDLEKASQQVAKQLYDLKVQPSTLIPKQVGNMYTASLYAAFASLLHEKHSSLEGKRVIMFSYGSGLTATM 369 (467)
Q Consensus 290 g~~~e~~~~~~~~~k~~~~~~~~~~~~~~~~s~~~~~~~GN~~taS~~l~L~~~l~~~~~~~~G~~ill~syGsG~~~~~ 369 (467)
|+|+++.+ . .+.+++|||++||+|++|.+++++ +++++|++|+|++||+|++|++
T Consensus 279 gl~~ek~~---------~---------------~~~~~~GNt~aAsipl~L~~~~~~-g~l~~Gd~vll~~fG~G~t~~a 333 (357)
T 3s3l_A 279 GLPDERTS---------W---------------AYGRTTGHVGAGDQYAGLAHLVEN-ALVQPGDRVLLFGGGAGYTCTA 333 (357)
T ss_dssp TSCGGGBT---------H---------------HHHHHHCBCTTCHHHHHHHHHHHT-TCCCTTCEEEEECCBTTTEEEE
T ss_pred CCCHHHhH---------H---------------HhccccccchHhHHHHHHHHHHHc-CCCCCCCEEEEEEEchhhhhee
Confidence 88888653 1 123689999999999999999998 8899999999999999999999
Q ss_pred EEEEEec
Q 012253 370 FSLQLQE 376 (467)
Q Consensus 370 ~~~~~~~ 376 (467)
.+++|.+
T Consensus 334 ~ll~~~~ 340 (357)
T 3s3l_A 334 AVVEILR 340 (357)
T ss_dssp EEEEECC
T ss_pred eeEEecc
Confidence 9999975
|
| >3led_A 3-oxoacyl-acyl carrier protein synthase III; structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.45A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-42 Score=356.56 Aligned_cols=311 Identities=14% Similarity=0.111 Sum_probs=232.1
Q ss_pred CCCceeEEeEEEEecCCceeehhHHhhhh------------------------CCCcCee--EEeccceEeeccCC----
Q 012253 4 WHPKNVGILALDIYFPPTCVLQEALEVHD------------------------GVSKGKY--TVGLGQDCMAFCSE---- 53 (467)
Q Consensus 4 ~~~~~vgI~ai~~y~P~~~v~~~el~~~~------------------------g~~~~k~--~~Gig~r~~av~~~---- 53 (467)
..++++.|.++|.|+|+++|+|+|+++.. +.+.+|+ ++||.+|+++.+..
T Consensus 20 ~~~~~~~I~gig~~~P~~~v~n~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~I~~~tGI~~R~~a~~~~~~~~ 99 (392)
T 3led_A 20 QGVRPAVIAATGLYTPPDSVSNAELVEAFNTYVANFNAANKARIEAGEIEPLQPSSSEFIEKASGIKSRYVVAKPGIVDP 99 (392)
T ss_dssp CBCCCEEEEEEEEECCSEEEEHHHHHHHHHHHHHHHHHHTHHHHHTTSSCCCCCCCHHHHHHHHCCCEEEESCCGGGGCT
T ss_pred cccCceEEEEEEEeCCCceEcHHHHHHHHhhhhcccccccchhhhcccccccCCCcHHHHHHccCCceEEEecCcccccc
Confidence 33578999999999999999999998642 2345666 47999998754321
Q ss_pred -----------C---CCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHhcccCCCCeeEEeeCC
Q 012253 54 -----------V---EDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTN 119 (467)
Q Consensus 54 -----------~---Ed~~~ma~~Aa~~aL~~agi~~~~Id~Li~~Tes~~~~~ps~a~~v~~~Lgl~G~~~~~~~di~~ 119 (467)
+ +.+.+|+++|+++||+++|++|++||.||++|.++++..|+++.+|++.||+ ++.+||+++
T Consensus 100 ~~~~~~~~~r~~~~~~~~~~La~~Aa~~AL~~agi~~~dId~vi~~t~t~~~~~p~~a~~v~~~LGl----~~~~~dv~~ 175 (392)
T 3led_A 100 DVMRPIIPERSNDELSILAEMAVTAAEQAIERWGKPRERIGAVLCACSNMQRAYPAMAIEVQNALGL----GGFAFDMNV 175 (392)
T ss_dssp TTCSCCCCCCCTTSCCHHHHHHHHHHHHHHHHHCSCGGGEEEEEEESSCCSCSBSCHHHHHHHHTTC----CSEEEEEEC
T ss_pred cccccccccchhcccccHHHHHHHHHHHHHHHcCCCHHHCCEEEEEecCCCCCccHHHHHHHHHhCC----CCeEEEECC
Confidence 1 1368999999999999999999999999999999998899999999999997 268999999
Q ss_pred cChHHHHHHHHHHHHHHhCCCCCCEEEEEEeecc-cccCC---CCCCccccceeEEEecCCCC----ceeeccccccccc
Q 012253 120 ACYGGTAALFNCVNWVESASWDGRYGLVVCTDSA-VYAEG---PARPTGGAAAVAMLIGPDAP----IAFESKLRGSHMS 191 (467)
Q Consensus 120 aC~gg~~AL~~A~~~l~a~~~~~~~aLVV~sD~~-~y~~~---~~~~t~GdGAvA~Ll~~~~~----~~~~~~~~~~~~~ 191 (467)
+|+|++.||.+|..+|++|.. ++||||++|.+ ...++ ....+|||||+|+||++++. ..+......+...
T Consensus 176 aC~g~~~aL~~A~~~i~~g~~--~~vLvvg~E~~S~~~d~~dr~t~~lFGDGA~A~vl~~~~~~~~~~~i~~~~~~s~~~ 253 (392)
T 3led_A 176 ACSSATFGLKTAADFVGGGSV--DAVLMVNPEICSGHLNFRDRDSHFIFGDVATAAIVERADDAQGGWSILGTKLKTQFS 253 (392)
T ss_dssp GGGHHHHHHHHHHHHHHTTSC--SEEEEEEEEEGGGGCCTTCTTTTTTBCEEEEEEEEEEGGGCCSSEEEEEEEEEECCC
T ss_pred ccHHHHHHHHHHHHHHHCCCC--CEEEEEeehhcCCcCCcCcccCCcccccccEEEEEEecCCCCCCCeEEEEEEEEccc
Confidence 999999999999999999955 99999999998 33333 23578999999999987642 1221111111111
Q ss_pred C-c---cccccc---C---CCCCCceecCcchHHHHHHHHHHHHHHHHHHHHhhhcCCCCccccceeccCCchHHHHHHH
Q 012253 192 H-A---YDFYKP---N---LASEYPVVDGKLSQTCYLMALDSCYKYFCQKFEKLEGRQFSMLDVDYFVFHSPYNKLVQKS 261 (467)
Q Consensus 192 ~-~---~df~~p---~---~~~~~~~vdG~~s~~~y~~a~~~~~~~~~~~~~~~~~~~~~~~d~d~~i~H~p~~k~~~k~ 261 (467)
+ . ..+..+ . ....+..++|+.. |..++....+.+.+.+ ++++++++|||+|++||++.+|++.+
T Consensus 254 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~v---~~~a~~~~~~~i~~~L---~~~gl~~~dId~~v~Hqan~~i~~~~ 327 (392)
T 3led_A 254 NNIRNNAGFLNRAWPEGRDKADKLFVQQGRKV---FKEVVPLVSEMIIEHA---REIGIDPHGLKRMWLHQANINMNEII 327 (392)
T ss_dssp SSEEBCCSGGGGGSGGGTTSGGGSCEECHHHH---HHHHHHHHHHHHHHHH---HHTTCCGGGCSEEEECSSCHHHHHHH
T ss_pred cccccCCCcccCCCccccccccceEEechHHH---HHHHHHHHHHHHHHHH---HHcCCCHHHCcEEEEcCCCHHHHHHH
Confidence 0 0 001010 0 0012355677765 4444444333333333 45689999999999999999999999
Q ss_pred HHhhhhhhhccccCchhhHHhhhcCCCCCCCcchhhhhhhHHHHHHHHHHHHhhhhcCCCcccccccCccccchHHHHHH
Q 012253 262 FARLFFNDFLRNASSVDEIAKEKLAPYSTLSDVESYQSRDLEKASQQVAKQLYDLKVQPSTLIPKQVGNMYTASLYAAFA 341 (467)
Q Consensus 262 ~~~l~~~~~~~~~~~~~~~~~~~l~~~~g~~~e~~~~~~~~~k~~~~~~~~~~~~~~~~s~~~~~~~GN~~taS~~l~L~ 341 (467)
.++|+ .+ +++.++.+ ...+++|||++||+|++|.
T Consensus 328 ~~~ll-----------------gl----~~~~~k~~-------------------------~~l~~~GNtssAsipl~L~ 361 (392)
T 3led_A 328 GRKVL-----------------GR----DPTRDENV-------------------------IILDDYANTSSAGSIIAFH 361 (392)
T ss_dssp HHHHH-----------------TS----CCCTTTBC-------------------------CCHHHHCBCGGGHHHHHHH
T ss_pred HHHhc-----------------CC----CCCHHHHH-------------------------HHHhhhCccHHHHHHHHHH
Confidence 98862 00 23444321 2237999999999999999
Q ss_pred HHHhhcCcCCCCCEEEEEEeccccceeeEEEEEe
Q 012253 342 SLLHEKHSSLEGKRVIMFSYGSGLTATMFSLQLQ 375 (467)
Q Consensus 342 ~~l~~~~~~~~G~~ill~syGsG~~~~~~~~~~~ 375 (467)
.+ . +++++|++|+|++||+|++|++.+++|.
T Consensus 362 ~~--~-~~~~~Gd~vll~gfG~G~t~~~~ll~~~ 392 (392)
T 3led_A 362 KH--Q-DDMAQGDLGLICSFGAGYSAGTVFVQKR 392 (392)
T ss_dssp HC--C-TTCCTTCEEEEEEEETTTEEEEEEEEEC
T ss_pred HH--h-CCCCCCCEEEEEEEChhhEeEEEEEEEC
Confidence 86 3 5688999999999999999999999984
|
| >1hnj_A Beta-ketoacyl-acyl carrier protein synthase III; FABH, transferase; HET: MLC; 1.46A {Escherichia coli} SCOP: c.95.1.2 c.95.1.2 PDB: 1hn9_A* 1hnh_A* 1hnd_A* 1hnk_A 1mzs_A* 2eft_A* 2gyo_A* 3il9_A 1ebl_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-41 Score=338.24 Aligned_cols=305 Identities=19% Similarity=0.182 Sum_probs=240.4
Q ss_pred ceeEEeEEEEecCCceeehhHHhhhhCCCcCeeE--EeccceEeeccCCCCCHHHHHHHHHHHHHHHcCCCcCCcCEEEE
Q 012253 7 KNVGILALDIYFPPTCVLQEALEVHDGVSKGKYT--VGLGQDCMAFCSEVEDVISMSLTVVTSLLEKYKIDPTQIGRLEV 84 (467)
Q Consensus 7 ~~vgI~ai~~y~P~~~v~~~el~~~~g~~~~k~~--~Gig~r~~av~~~~Ed~~~ma~~Aa~~aL~~agi~~~~Id~Li~ 84 (467)
|+++|.++++|+|+.+++++++++..+.+++|+. .||.+|+ ++.++++..+|+++|++++|+++|++|++||.|++
T Consensus 1 ~~~~I~~~g~~~P~~~~~~~~~~~~~~~~~~~i~~~~Gi~~r~--~~~~~~~~~~l~~~a~~~al~~ag~~~~~id~vi~ 78 (317)
T 1hnj_A 1 MYTKIIGTGSYLPEQVRTNADLEKMVDTSDEWIVTRTGIRERH--IAAPNETVSTMGFEAATRAIEMAGIEKDQIGLIVV 78 (317)
T ss_dssp CEEEEEEEEEECCSEEEEHHHHHTTSSCCHHHHHHHHCCCEEE--ECCTTCCHHHHHHHHHHHHHHHHTCCGGGCCEEEE
T ss_pred CCcEEEEEEEeCCCceecHHHHHHHhCCCHHHHHHHhCceEEE--ecCCCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEE
Confidence 3689999999999999999999998888877773 5676666 45778999999999999999999999999999999
Q ss_pred EeccCCCCCCcHHHHHHHHhcccCCCCeeEEeeCCcChHHHHHHHHHHHHHHhCCCCCCEEEEEEeecc-cccCCCC---
Q 012253 85 GSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDSA-VYAEGPA--- 160 (467)
Q Consensus 85 ~Tes~~~~~ps~a~~v~~~Lgl~G~~~~~~~di~~aC~gg~~AL~~A~~~l~a~~~~~~~aLVV~sD~~-~y~~~~~--- 160 (467)
+|.++.+..|+++.+|+..||+ +++.++++.++|++++.||..|..+|++|.. +.|||+++|.. ...++.+
T Consensus 79 g~~~~~~~~~~~a~~v~~~lgl---~~~~~~~v~~aCas~~~al~~A~~~i~~g~~--~~vlv~g~e~~s~~~~~~d~~~ 153 (317)
T 1hnj_A 79 ATTSATHAFPSAACQIQSMLGI---KGCPAFDVAAACAGFTYALSVADQYVKSGAV--KYALVVGSDVLARTCDPTDRGT 153 (317)
T ss_dssp ECSCCSCSSSCHHHHHHHHHTC---CSSCEEEECCGGGHHHHHHHHHHHHHHTTSC--SEEEEEEEECHHHHSCTTCHHH
T ss_pred EcCCCCCCCCcHHHHHHHHhCC---CCCeEEeeCcccHHHHHHHHHHHHHHHCCCC--CEEEEEEechhcccCCchhccc
Confidence 9999988889999999999998 4478999999999999999999999999965 99999999986 3223333
Q ss_pred CCccccceeEEEecCCCCceeecccccccccCcccccccCC------CCCCceecCcchHHHHHHHHHHHHHHHHHHHHh
Q 012253 161 RPTGGAAAVAMLIGPDAPIAFESKLRGSHMSHAYDFYKPNL------ASEYPVVDGKLSQTCYLMALDSCYKYFCQKFEK 234 (467)
Q Consensus 161 ~~t~GdGAvA~Ll~~~~~~~~~~~~~~~~~~~~~df~~p~~------~~~~~~vdG~~s~~~y~~a~~~~~~~~~~~~~~ 234 (467)
..++||||+|+||++.+.-.+.....+++......+..|.+ ...++.++|+.+...+.+.+..+++..++
T Consensus 154 ~~~~GdGA~A~vL~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~aL~---- 229 (317)
T 1hnj_A 154 IIIFGDGAGAAVLAASEEPGIISTHLHADGSYGELLTLPNADRVNPENSIHLTMAGNEVFKVAVTELAHIVDETLA---- 229 (317)
T ss_dssp HTTBCCEEEEEEEEEESSCSEEEEEEEECGGGGGGEECCCCCSSCTTSCCSCEECHHHHHHHHHHHHHHHHHHHHH----
T ss_pred ceeeccccEEEEEEecCCCceeeEEEEEcCCCCCeEEECCCCCCCCCCCceEEecCHHHHHHHHHHHHHHHHHHHH----
Confidence 35789999999998754211100011111111111222321 12356678877655555555555555544
Q ss_pred hhcCCCCccccceeccCCchHHHHHHHHHhhhhhhhccccCchhhHHhhhcCCCCCCCcchhhhhhhHHHHHHHHHHHHh
Q 012253 235 LEGRQFSMLDVDYFVFHSPYNKLVQKSFARLFFNDFLRNASSVDEIAKEKLAPYSTLSDVESYQSRDLEKASQQVAKQLY 314 (467)
Q Consensus 235 ~~~~~~~~~d~d~~i~H~p~~k~~~k~~~~l~~~~~~~~~~~~~~~~~~~l~~~~g~~~e~~~~~~~~~k~~~~~~~~~~ 314 (467)
++++.++|||++++|+++.++.+.+.+.+ |++.++.+
T Consensus 230 --~agl~~~did~v~~H~~~~~~~d~i~~~l------------------------g~~~~~~~----------------- 266 (317)
T 1hnj_A 230 --ANNLDRSQLDWLVPHQANLRIISATAKKL------------------------GMSMDNVV----------------- 266 (317)
T ss_dssp --HTTCCGGGCCEEEECCSCHHHHHHHHHHT------------------------TCCGGGBC-----------------
T ss_pred --HcCCCHHHCCEEEEcCCCHHHHHHHHHHc------------------------CCCHHHhH-----------------
Confidence 45799999999999999999999877766 56655431
Q ss_pred hhhcCCCcccccccCccccchHHHHHHHHHhhcCcCCCCCEEEEEEeccccceeeEEEEE
Q 012253 315 DLKVQPSTLIPKQVGNMYTASLYAAFASLLHEKHSSLEGKRVIMFSYGSGLTATMFSLQL 374 (467)
Q Consensus 315 ~~~~~~s~~~~~~~GN~~taS~~l~L~~~l~~~~~~~~G~~ill~syGsG~~~~~~~~~~ 374 (467)
....++||+++||++++|.+++++ +++++|++|++++||+|++|++++++|
T Consensus 267 --------~~~~~~Gn~~~As~~~~L~~~~~~-~~~~~G~~vll~~~G~G~t~~~~~l~~ 317 (317)
T 1hnj_A 267 --------VTLDRHGNTSAASVPCALDEAVRD-GRIKPGQLVLLEAFGGGFTWGSALVRF 317 (317)
T ss_dssp --------CCHHHHCBCGGGHHHHHHHHHHHT-TCSCTTCEEEEEEEETTTEEEEEEEEC
T ss_pred --------hhHhhhCcHHHHHHHHHHHHHHHh-CCCCCCCEEEEEEEchhheeEEEEEEC
Confidence 112689999999999999999998 788999999999999999999999986
|
| >2x3e_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; HED, transferase, acyltransferase, lipid synthesis, multifun enzyme; 1.81A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-41 Score=337.77 Aligned_cols=303 Identities=17% Similarity=0.179 Sum_probs=241.2
Q ss_pred ceeEEeEEEEecCCceeehhHHhhhhCCCcCeeE--EeccceEeeccCCCCCHHHHHHHHHHHHHHHcCCCcCCcCEEEE
Q 012253 7 KNVGILALDIYFPPTCVLQEALEVHDGVSKGKYT--VGLGQDCMAFCSEVEDVISMSLTVVTSLLEKYKIDPTQIGRLEV 84 (467)
Q Consensus 7 ~~vgI~ai~~y~P~~~v~~~el~~~~g~~~~k~~--~Gig~r~~av~~~~Ed~~~ma~~Aa~~aL~~agi~~~~Id~Li~ 84 (467)
|+++|.++++|+|+.+++++++++..+.+.+|+. +||.+|++ +.+ ++..+|+++|++++|+++|+ ++||.|++
T Consensus 4 m~~~I~g~g~~~P~~~~~~~~~~~~~~~~~~~i~~~~Gi~~R~~--~~~-~~~~~la~~Aa~~al~~ag~--~~id~vi~ 78 (331)
T 2x3e_A 4 RAAVVCGLGSYLPEAVLSNDMLAAELDTSDAWISSRTGVRQRHI--AGD-LGSGDLALRAASAALASAGL--ERVDAVVL 78 (331)
T ss_dssp CEEEEEEEEEECCSCEEEHHHHHHHTTCCHHHHHHHHCCCEEEC--CTT-CCHHHHHHHHHHHHHHHHTC--SCCSEEEE
T ss_pred ceeEEEEEEEECCCcEecHHHHHHHhCCCHHHHHHhhCceEEEe--cCC-CCHHHHHHHHHHHHHHhCCc--ccCCEEEE
Confidence 5799999999999999999999999888888874 57777764 344 89999999999999999999 89999999
Q ss_pred EeccCCCCCCcHHHHHHHHhcccCCCCeeEEeeCCcChHHHHHHHHHHHHHHhCCCCCCEEEEEEeecc-cccCCCC---
Q 012253 85 GSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDSA-VYAEGPA--- 160 (467)
Q Consensus 85 ~Tes~~~~~ps~a~~v~~~Lgl~G~~~~~~~di~~aC~gg~~AL~~A~~~l~a~~~~~~~aLVV~sD~~-~y~~~~~--- 160 (467)
+|.++++..|+++.+|+..||+ +++.++++.++|+|++.||..|..+|++|.. ++|||+++|.. .+.++.+
T Consensus 79 ~t~~~~~~~p~~a~~v~~~lgl---~~~~~~~v~~aCas~~~Al~~A~~~i~~g~~--~~vLv~g~e~~s~~~~~~d~~~ 153 (331)
T 2x3e_A 79 ATSTGDFCCPATAPRVAARLGL---VGALAFDLSAAATGFVYGLASVGSLISAGLA--DSALLVGVDTFSHTLDPADRST 153 (331)
T ss_dssp ECSSCSEEESCSHHHHHHHTTC---TTSEEEEEECGGGHHHHHHHHHHHHHHTTSC--SEEEEEEEECGGGGSCTTCHHH
T ss_pred EeCCCCCCCChHHHHHHHHhCC---CCCcEEEEcCcChHHHHHHHHHHHHHHcCCC--CEEEEEEeeccccCCCcccccc
Confidence 9999988789999999999998 4489999999999999999999999999955 99999999987 3333333
Q ss_pred CCccccceeEEEecCCC--C-ceeecccccccccCccc-ccccCC---------CCCCceecCcchHHHHHHHHHHHHHH
Q 012253 161 RPTGGAAAVAMLIGPDA--P-IAFESKLRGSHMSHAYD-FYKPNL---------ASEYPVVDGKLSQTCYLMALDSCYKY 227 (467)
Q Consensus 161 ~~t~GdGAvA~Ll~~~~--~-~~~~~~~~~~~~~~~~d-f~~p~~---------~~~~~~vdG~~s~~~y~~a~~~~~~~ 227 (467)
..++||||+|+||++.+ . ..+......+... ..| ++.|.. ...|..++|+.+...+.+.+..+++.
T Consensus 154 ~~~~GdGA~A~vL~~~~~a~~~~i~~~~~~~dg~-~~~~~~~p~~~~~~p~~~~~~~~~~~~g~~v~~~~~~~~~~~i~~ 232 (331)
T 2x3e_A 154 RALFGDGAGAVVLRAGDAEEEGALLAFDLGSDGH-QFDLLMTPAVSRAERSSGQASNYFRMDGKAVFGQAVTQMSDSVRR 232 (331)
T ss_dssp HHHBCCEEEEEEEEEECTTSTTBEEEEEEEECGG-GTTSEEEECCCHHHHHHTCCCCCCEECHHHHHHHHHHHHHHHHHH
T ss_pred ceeeccccEEEEEEecCCCCCCceEEEEEEEcCC-CCCeEEecCCCCCCCCccCcCceEEecCHHHHHHHHHHHHHHHHH
Confidence 35789999999998754 2 1111000111111 112 223321 12355778887766555666666666
Q ss_pred HHHHHHhhhcCCCCccccceeccCCchHHHHHHHHHhhhhhhhccccCchhhHHhhhcCCCCCCCcchhhhhhhHHHHHH
Q 012253 228 FCQKFEKLEGRQFSMLDVDYFVFHSPYNKLVQKSFARLFFNDFLRNASSVDEIAKEKLAPYSTLSDVESYQSRDLEKASQ 307 (467)
Q Consensus 228 ~~~~~~~~~~~~~~~~d~d~~i~H~p~~k~~~k~~~~l~~~~~~~~~~~~~~~~~~~l~~~~g~~~e~~~~~~~~~k~~~ 307 (467)
++++ ++++++|||+|++||++.++.+++.++| ++++++.+
T Consensus 233 aL~~------agl~~~did~~~~H~~~~~~~d~~~~~l------------------------g~~~~~~~---------- 272 (331)
T 2x3e_A 233 VLDR------VGWQASDLHHLVPHQANTRILAAVADQL------------------------DLPVERVV---------- 272 (331)
T ss_dssp HHHH------HTCCGGGCSEEEECCCCHHHHHHHHHHH------------------------TCCGGGBC----------
T ss_pred HHHH------cCCCHHHCCEEEEcCCCHHHHHHHHHHc------------------------CCCHHHHh----------
Confidence 5554 4699999999999999999999988877 66666432
Q ss_pred HHHHHHhhhhcCCCcccccccCccccchHHHHHHHHHhhcCcCCCCCEEEEEEeccccceeeEEEEEec
Q 012253 308 QVAKQLYDLKVQPSTLIPKQVGNMYTASLYAAFASLLHEKHSSLEGKRVIMFSYGSGLTATMFSLQLQE 376 (467)
Q Consensus 308 ~~~~~~~~~~~~~s~~~~~~~GN~~taS~~l~L~~~l~~~~~~~~G~~ill~syGsG~~~~~~~~~~~~ 376 (467)
.+ ..++||+++||++++|.+++++ +++++|++|++++||+|+++++++++|.+
T Consensus 273 ------------~~---~~~~Gnt~sAs~~~~L~~~~~~-~~~~~G~~vll~~~G~G~~~~~~~l~~~~ 325 (331)
T 2x3e_A 273 ------------SN---IAEVGNTVAASIPLALAHGLRQ-GILRDGGNMVLTGFGAGLTWGSVALRWPK 325 (331)
T ss_dssp ------------CC---HHHHCBCGGGHHHHHHHHHHHT-TCSCTTCEEEEEEEETTTEEEEEEEECCC
T ss_pred ------------hh---HhhhCcHHHHHHHHHHHHHHHh-CCCCCCCEEEEEEEeHHhhheeeEEEECC
Confidence 11 1689999999999999999998 78899999999999999999999999965
|
| >1mzj_A Beta-ketoacylsynthase III; beta-ketosynthase, aromatic polyketide, biosynthetic engineering, catalytic triad, transferase; HET: COA; 2.10A {Streptomyces SP} SCOP: c.95.1.2 c.95.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=8.6e-41 Score=337.41 Aligned_cols=307 Identities=20% Similarity=0.206 Sum_probs=242.1
Q ss_pred CceeEEeEEEEecCCceeehhHHhhhhCCCcCeeE--EeccceEeeccCCCCCHHHHHHHHHHHHHHHcCCCcCCcCEEE
Q 012253 6 PKNVGILALDIYFPPTCVLQEALEVHDGVSKGKYT--VGLGQDCMAFCSEVEDVISMSLTVVTSLLEKYKIDPTQIGRLE 83 (467)
Q Consensus 6 ~~~vgI~ai~~y~P~~~v~~~el~~~~g~~~~k~~--~Gig~r~~av~~~~Ed~~~ma~~Aa~~aL~~agi~~~~Id~Li 83 (467)
+++++|.++++|+|+.+++++++++..+.+++|+. +||.+|+ ++.++++..+|+++|++++|+++|+++++||.|+
T Consensus 9 ~~~~~I~gig~~~P~~~~~~~~~~~~~~~~~~~i~~~~Gi~~R~--~~~~~~~~~~la~~Aa~~al~~ag~~~~~id~vi 86 (339)
T 1mzj_A 9 RRFSRVLGVGSYRPRREVSNKEVCTWIDSTEEWIETRTGIRSRR--IAEPDETIQVMGVAASRRALEHAGVDPAEIDLVV 86 (339)
T ss_dssp CCEEEEEEEEEECCSCEEEHHHHTTTSSCCHHHHHHHHCCSEEE--CCCTTCCHHHHHHHHHHHHHHHHTCCGGGCCEEE
T ss_pred cCceEEEEEEEeCCCccccHHHHHHHhCCCHHHHHHhcCceEEE--EeCCCCCHHHHHHHHHHHHHHHcCCCHHHCCEEE
Confidence 46799999999999999999999998888777773 5777666 5577899999999999999999999999999999
Q ss_pred EEeccCCCCCCcHHHHHHHHhcccCCCCeeEEeeCCcChHHHHHHHHHHHHHHhCCCCCCEEEEEEeecc-cccCCC---
Q 012253 84 VGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDSA-VYAEGP--- 159 (467)
Q Consensus 84 ~~Tes~~~~~ps~a~~v~~~Lgl~G~~~~~~~di~~aC~gg~~AL~~A~~~l~a~~~~~~~aLVV~sD~~-~y~~~~--- 159 (467)
++|.++++..|+++.+|+..||+ +++.++++.++|+|++.||..|..+|++|.. ++|||+++|.. ...++.
T Consensus 87 ~gt~~~~~~~p~~a~~v~~~lgl---~~~~~~~v~~aCas~~~Al~~A~~~i~~G~~--~~vLv~g~e~~s~~~~~~d~~ 161 (339)
T 1mzj_A 87 VSTMTNFVHTPPLSVAIAHELGA---DNAGGFDLSAACAGFCHALSIAADAVESGGS--RHVLVVATERMTDVIDLADRS 161 (339)
T ss_dssp EECSCCCCCSSCHHHHHHHHHTC---TTCEEEEEECGGGHHHHHHHHHHHHHHHSSC--SCEEEEEEEEGGGGSCSSCTT
T ss_pred EEecCCCCCCChHHHHHHHHhCC---CCccEEEccccchHHHHHHHHHHHHHHCCCC--CEEEEEEEcccccccCccccc
Confidence 99999988899999999999998 4489999999999999999999999999965 99999999987 222222
Q ss_pred CCCccccceeEEEecCCCCceeecccccccccCcccccc-----cCC------CCCCceecCcchHHHHHHHHHHHHHHH
Q 012253 160 ARPTGGAAAVAMLIGPDAPIAFESKLRGSHMSHAYDFYK-----PNL------ASEYPVVDGKLSQTCYLMALDSCYKYF 228 (467)
Q Consensus 160 ~~~t~GdGAvA~Ll~~~~~~~~~~~~~~~~~~~~~df~~-----p~~------~~~~~~vdG~~s~~~y~~a~~~~~~~~ 228 (467)
...++||||+|+||++.+...+......++.. ..|.+. |.. ...+..++|+.+...+.+.+..+++.+
T Consensus 162 ~~~~~GdGA~A~vL~~~~~~~i~~~~~~~~g~-~~~~~~~~g~~p~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~i~~a 240 (339)
T 1mzj_A 162 LSFLFGDGAGAAVVGPSDVPGIGPVVRGIDGT-GLGSLHMSSSWDQYVEDPSVGRPALVMDGKRVFRWAVADVVPAAREA 240 (339)
T ss_dssp TTTTBCEEEEEEEEEEESSCCBCCCEEEECGG-GGGGEEESCCHHHHTTCSSSCSCCEEECHHHHHHHHHHHHHHHHHHH
T ss_pred cceEeccCceEEEEEecCCCCeEEEEEEEcCC-CCCeEEecCCCCCcccccccccceEEeeCHHHHHHHHHHHHHHHHHH
Confidence 24678999999999875421110000011111 111111 210 123567788877555555555555444
Q ss_pred HHHHHhhhcCCCCccccceeccCCchHHHHHHHHHhhhhhhhccccCchhhHHhhhcCCCCCCCcc-hhhhhhhHHHHHH
Q 012253 229 CQKFEKLEGRQFSMLDVDYFVFHSPYNKLVQKSFARLFFNDFLRNASSVDEIAKEKLAPYSTLSDV-ESYQSRDLEKASQ 307 (467)
Q Consensus 229 ~~~~~~~~~~~~~~~d~d~~i~H~p~~k~~~k~~~~l~~~~~~~~~~~~~~~~~~~l~~~~g~~~e-~~~~~~~~~k~~~ 307 (467)
+ +++++.++|||+|++|+++.++.+.+.++| |++.+ +.+
T Consensus 241 L------~~agl~~~did~v~~H~~~~~~~d~i~~~l------------------------g~~~~~~~~---------- 280 (339)
T 1mzj_A 241 L------EVAGLTVGDLVAFVPHQANLRIIDVLVDRL------------------------GVPEHVVVS---------- 280 (339)
T ss_dssp H------HTTTCCGGGCSEEEECCSCHHHHHHHHHHH------------------------TCCTTSEEC----------
T ss_pred H------HHcCCCHHHCCEEEECCCCHHHHHHHHHHh------------------------CCCccceee----------
Confidence 4 456899999999999999999999887777 66655 432
Q ss_pred HHHHHHhhhhcCCCcccccccCccccchHHHHHHHHHhhcCcCCCCCEEEEEEeccccceeeEEEEEec
Q 012253 308 QVAKQLYDLKVQPSTLIPKQVGNMYTASLYAAFASLLHEKHSSLEGKRVIMFSYGSGLTATMFSLQLQE 376 (467)
Q Consensus 308 ~~~~~~~~~~~~~s~~~~~~~GN~~taS~~l~L~~~l~~~~~~~~G~~ill~syGsG~~~~~~~~~~~~ 376 (467)
.+ ..++||+++||++++|..++++ +++++|++|++++||+|+++++++++|.+
T Consensus 281 ------------~~---~~~~Gn~~sAs~~~~L~~~~~~-g~~~~G~~vll~~~G~G~t~~~~~l~~~~ 333 (339)
T 1mzj_A 281 ------------RD---AEDTGNTSSASVALALDRLVRS-GAVPGGGPALMIGFGAGLSYAGQALLLPD 333 (339)
T ss_dssp ------------CT---HHHHCBCTTHHHHHHHHHHHHH-TSSCTTCEEEEEEEETTTEEEEEEEECCC
T ss_pred ------------eh---hhhcCchHHHHHHHHHHHHHHc-CCCCCCCEEEEEEEchhheeEEEEEEeCC
Confidence 11 1689999999999999999998 78899999999999999999999999964
|
| >3e1h_A PKSIIINC, putative uncharacterized protein; resorcinolic lipid synthase, type III PKS, acyltransferase, transferase; 2.58A {Neurospora crassa} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-41 Score=349.59 Aligned_cols=316 Identities=16% Similarity=0.195 Sum_probs=238.4
Q ss_pred CCceeEEeEEEEecCCceeehhHHhhhhCC----C--cCe---e--EEeccceEeeccCCC-------------------
Q 012253 5 HPKNVGILALDIYFPPTCVLQEALEVHDGV----S--KGK---Y--TVGLGQDCMAFCSEV------------------- 54 (467)
Q Consensus 5 ~~~~vgI~ai~~y~P~~~v~~~el~~~~g~----~--~~k---~--~~Gig~r~~av~~~~------------------- 54 (467)
+.++|.|.+++.|+|+++|+|+|+.+..+. . .+| + .+||.+|+++..+..
T Consensus 28 ~~~~v~I~gigt~lP~~~v~n~el~~~~~~~~~~~~~~~~~~~i~~~tGI~~R~~~~~~~~p~~~~~~~ps~~~r~~~~~ 107 (465)
T 3e1h_A 28 GELGLSITGLGVQYPPYSLGPDAIDILSKRYHPESPAMKKVLAINRYTGIDQRSSIGNPDHPLVNKPNPPTVKELHEVFM 107 (465)
T ss_dssp CCCCEEEEEEEEECCSSCCBCTHHHHHTCSSSCCCHHHHHHHHHTTTSCCCCBCCSSCTTCGGGSSSSCCCHHHHHHHHH
T ss_pred CCCCEEEEEEEEECCCcEEcHHHHHHHHHHhcccchhHHHHHHHHHhcCCceEEEeecccCcccccccCCCHHHHHHHHH
Confidence 347899999999999999999999776431 1 133 2 379999987533211
Q ss_pred CCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHhcccCCCCeeEEee-CCcChHHHHHHHHHHH
Q 012253 55 EDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDS-TNACYGGTAALFNCVN 133 (467)
Q Consensus 55 Ed~~~ma~~Aa~~aL~~agi~~~~Id~Li~~Tes~~~~~ps~a~~v~~~Lgl~G~~~~~~~di-~~aC~gg~~AL~~A~~ 133 (467)
+++.+||++|+++||+++|++|+|||+||++|+| .+..|+++.+|+++||+ .+.+.+||+ +++|+|+++||.+|.+
T Consensus 108 ~~a~~La~~Aa~~AL~~agi~~~dId~li~~t~t-~~~~P~~a~~v~~~LGl--~~~~~~~dv~~~~Csgg~~AL~~A~~ 184 (465)
T 3e1h_A 108 SDGVPLAVEASRKAMAEARLVPAQITHMVSTTCT-DSANPGYDHYVAKELGL--SDRLEKVLLHGIGCSGGLAALRTAAN 184 (465)
T ss_dssp HHTHHHHHHHHHHHHHHHTCCGGGCCEEEEECSS-CCCSSCHHHHHHHHHTC--CTTCEEEEECSCGGGHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHcCCCHHHCCEEEEEeeC-CCCCCcHHHHHHHHhCC--CCCeeEEEecCCcchHHHHHHHHHHH
Confidence 2357999999999999999999999999999999 56799999999999998 555669999 6999999999999999
Q ss_pred HHHh----CCCCCCEEEEEEeecc-cccC------------CCCCCccccceeEEEecCCCCc------eeecccccccc
Q 012253 134 WVES----ASWDGRYGLVVCTDSA-VYAE------------GPARPTGGAAAVAMLIGPDAPI------AFESKLRGSHM 190 (467)
Q Consensus 134 ~l~a----~~~~~~~aLVV~sD~~-~y~~------------~~~~~t~GdGAvA~Ll~~~~~~------~~~~~~~~~~~ 190 (467)
+|++ |.. ++||||++|++ .+.+ .....+|||||+|+||++++.- .++ +.+...
T Consensus 185 ~i~a~~~~G~~--~~vLVvg~E~~S~~~~~~~~~~~~~~~d~~t~~LFGDGAaAvVl~~~~~~~~~~~~~~~--l~~~~~ 260 (465)
T 3e1h_A 185 LCLGHTARGKP--ARILVLALEVSTTMVRSELESIDALQETRIGIALFSDCASAVILSNGIGEAPGKPAIYD--LLGWEN 260 (465)
T ss_dssp HHHHHHHTTCC--CEEEEEEEECCGGGHHHHHHHHHHHTCCCCHHHHBCCEEEEEEEECCTTCCTTCCCSEE--EEEEEE
T ss_pred HHhcccccCCC--CEEEEEEEeecchhcCcccccccccccccccccccccceeEEEEEccCCCcccccccee--eccceE
Confidence 9997 754 99999999998 3222 1224579999999999986420 111 111111
Q ss_pred c------CcccccccCCCCCCceecCcchHHHHHHHHHHHHHHHHHHHH-hhhcCCCCccccceeccCCchHHHHHHHHH
Q 012253 191 S------HAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKYFCQKFE-KLEGRQFSMLDVDYFVFHSPYNKLVQKSFA 263 (467)
Q Consensus 191 ~------~~~df~~p~~~~~~~~vdG~~s~~~y~~a~~~~~~~~~~~~~-~~~~~~~~~~d~d~~i~H~p~~k~~~k~~~ 263 (467)
. +...+ ... ...+..++|+.+.....+.+..+++.++++.+ .+..++++++||||+ +||++.+|++.+.+
T Consensus 261 ~~~p~~~~~~~~-~~~-~~g~~~~~g~~V~~~a~~~v~~~i~~~L~~~g~~L~~agl~~~DId~~-~Hqan~rIl~~v~~ 337 (465)
T 3e1h_A 261 RVIPDSEHDLGF-DVD-PMGWKVVLSPRVPVLAKASLQPTYADLLSSLQDQLPSSYQKPADFDWA-MHPGGATILSGAES 337 (465)
T ss_dssp EECTTCTTTEEE-EEE-TTEEEEEECTTHHHHHHHHHHHHHHHHHHHHGGGSCTTSCSGGGSEEE-ECCSSHHHHHHHHH
T ss_pred EEecCCccccCc-ccc-CCCceEecChHHHHHHHHHHHHHHHHHHHhccccccccCCCHHHceEE-ecCCChHHHHHHHH
Confidence 1 11111 111 11245678887755555666666666666532 123467899999987 99999999999999
Q ss_pred hhhhhhhccccCchhhHHhhhcCCCCCCCcchhhhhhhHHHHHHHHHHHHhhhhcCCCcccccccCccccchHHHHHHHH
Q 012253 264 RLFFNDFLRNASSVDEIAKEKLAPYSTLSDVESYQSRDLEKASQQVAKQLYDLKVQPSTLIPKQVGNMYTASLYAAFASL 343 (467)
Q Consensus 264 ~l~~~~~~~~~~~~~~~~~~~l~~~~g~~~e~~~~~~~~~k~~~~~~~~~~~~~~~~s~~~~~~~GN~~taS~~l~L~~~ 343 (467)
+| |+++++... ++.+.+++|||+|||+|++|..+
T Consensus 338 ~L------------------------gl~~ek~~~----------------------s~~~l~~yGNtsSASip~aL~~~ 371 (465)
T 3e1h_A 338 AM------------------------GLTPEHMRA----------------------SYDRYINHGNSSSATIFSVLNRL 371 (465)
T ss_dssp HH------------------------TCCGGGGHH----------------------HHHHHHHHCBCGGGHHHHHHHHH
T ss_pred Hh------------------------CcCHHHhHH----------------------HHHHHhcceechHhHHHHHHHHH
Confidence 98 888886421 12233799999999999999999
Q ss_pred Hhhc-CcCCCC----CEEEEEEeccccceeeEEEEEec
Q 012253 344 LHEK-HSSLEG----KRVIMFSYGSGLTATMFSLQLQE 376 (467)
Q Consensus 344 l~~~-~~~~~G----~~ill~syGsG~~~~~~~~~~~~ 376 (467)
+++. +++++| ++|+|++||+|++|++++++|..
T Consensus 372 ~~~~~g~l~~Gg~~~d~vll~gfG~Glt~~~~llr~~~ 409 (465)
T 3e1h_A 372 REKDMDALAPGGKVKEYVVGCAFGPGINVEMCMLKRRM 409 (465)
T ss_dssp TSTTTTSCSSSSCCCSEEEEEEEETTTEEEEEEEEECC
T ss_pred HHhcccccCCCCCCCCEEEEEEEhHHHhhhheeeEEec
Confidence 9862 346666 99999999999999999999976
|
| >3ov2_A Curcumin synthase; type III polyketide synthase, transferase; 2.32A {Curcuma longa} PDB: 3ov3_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-40 Score=340.45 Aligned_cols=307 Identities=16% Similarity=0.120 Sum_probs=228.8
Q ss_pred ceeEEeEEEEecCCceeehhHHhhhh---CCCcCe---------e--EEeccceEeeccCCCC-----------------
Q 012253 7 KNVGILALDIYFPPTCVLQEALEVHD---GVSKGK---------Y--TVGLGQDCMAFCSEVE----------------- 55 (467)
Q Consensus 7 ~~vgI~ai~~y~P~~~v~~~el~~~~---g~~~~k---------~--~~Gig~r~~av~~~~E----------------- 55 (467)
..+.|.+++.|+|+++|+|+|+++.. ..+.++ + ++||.+|+++ .++|
T Consensus 15 ~~~~I~~ig~~~P~~~v~n~e~~~~~~~~~~~~~~~~~~~~~~~i~~~tGI~~R~~~--~~~e~~~~~~~~~~~~~p~~~ 92 (393)
T 3ov2_A 15 GPATIMAIGTATPPNLYEQSTFPDFYFRVTNSDDKQELKKKFRRMCEKTMVKKRYLH--LTEEILKERPKLCSYKEASFD 92 (393)
T ss_dssp SCCEEEEEEEECCSCEEEGGGHHHHHHHHTTCTTCHHHHHHHHHHHHHTCCCEEECS--CCHHHHHHSGGGGSSSSCCHH
T ss_pred CCeEEEEEEeeCCCcccCHHHHHHHHHHhhcccchHHHHHHHHHHHHhcCCceEEee--cChhhhccCcccccCCCCCHH
Confidence 56999999999999999999999874 223332 3 3799888865 3333
Q ss_pred --------CHHHHHHHHHHHHHHHcCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHhcccCCCCe-eEEeeCCcChHHHH
Q 012253 56 --------DVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDI-EGVDSTNACYGGTA 126 (467)
Q Consensus 56 --------d~~~ma~~Aa~~aL~~agi~~~~Id~Li~~Tes~~~~~ps~a~~v~~~Lgl~G~~~~-~~~di~~aC~gg~~ 126 (467)
++.+|+++|+++||+++|+++++||.||++|+|+ +..|+++.+|++.||+ ++.+ +++|+.++|+|++.
T Consensus 93 ~r~~~~~~~~~~La~~Aa~~aL~~ag~~~~dId~vi~~t~t~-~~~p~~a~~v~~~LGl--~~~~~~~~~v~~~C~g~~~ 169 (393)
T 3ov2_A 93 DRQDIVVEEIPRLAKEAAEKAIKEWGRPKSEITHLVFCSISG-IDMPGADYRLATLLGL--PLTVNRLMIYSQACHMGAA 169 (393)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSCGGGCCEEEEEESSC-CCBSCHHHHHHHHHTC--CTTSEEEEEESCCTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEEEeCC-CCCCCHHHHHHHHcCC--CCCcceeeEEcCccHHHHH
Confidence 5899999999999999999999999999999999 6799999999999998 4445 38999999999999
Q ss_pred HHHHHHHHHHhCCCCCCEEEEEEeecc--cccCCCC--------CCccccceeEEEecCCCCceeecccccccccCcccc
Q 012253 127 ALFNCVNWVESASWDGRYGLVVCTDSA--VYAEGPA--------RPTGGAAAVAMLIGPDAPIAFESKLRGSHMSHAYDF 196 (467)
Q Consensus 127 AL~~A~~~l~a~~~~~~~aLVV~sD~~--~y~~~~~--------~~t~GdGAvA~Ll~~~~~~~~~~~~~~~~~~~~~df 196 (467)
||.+|..+|++|.. ++||||++|.+ .+.++.+ ..+|||||+|+||++++...+.......... ...
T Consensus 170 al~~A~~~i~sg~~--~~vLvvg~E~~s~~~~~~~d~~~~~~~~~~lFGDGAaA~vl~~~~~~~~~~~~~~~~~~--~~~ 245 (393)
T 3ov2_A 170 MLRIAKDLAENNRG--ARVLVVACEITVLSFRGPNEGDFEALAGQAGFGDGAGAVVVGADPLEGIEKPIYEIAAA--MQE 245 (393)
T ss_dssp HHHHHHHHHHHSTT--CEEEEEEEECGGGTCCCCCTTCHHHHHHHHHBCCEEEEEEEESSCCTTTCCCSEEEEEE--EEE
T ss_pred HHHHHHHHHHcCCC--CEEEEEEEeccchhccCCcccchhhhcccccccCccEEEEEEecCCCcccCceeEEEec--CcE
Confidence 99999999999954 99999999998 3544433 2468999999999987531111000000000 001
Q ss_pred cccCCCC----------CCceecCcchHHHHHHHHHHHHHHHHHHHHhhhcCCCCc-cccceeccCCchHHHHHHHHHhh
Q 012253 197 YKPNLAS----------EYPVVDGKLSQTCYLMALDSCYKYFCQKFEKLEGRQFSM-LDVDYFVFHSPYNKLVQKSFARL 265 (467)
Q Consensus 197 ~~p~~~~----------~~~~vdG~~s~~~y~~a~~~~~~~~~~~~~~~~~~~~~~-~d~d~~i~H~p~~k~~~k~~~~l 265 (467)
..|.... .+..+ ++.......+.+..+.+.++ +++|++. +|+ +|++||++.+|++.+.++|
T Consensus 246 ~~p~~~~~~~~~~~~~g~~~~~-~~~v~~~~~~~~~~~i~~~L------~~~gl~~~~di-~~v~Hq~n~~i~~~v~~~L 317 (393)
T 3ov2_A 246 TVAESQGAVGGHLRAFGWTFYF-LNQLPAIIADNLGRSLERAL------APLGVREWNDV-FWVAHPGNWAIIDAIEAKL 317 (393)
T ss_dssp ECTTCTTSEEEEEETTEEEEEE-CTTHHHHHHTTSHHHHHHHH------GGGTCCSGGGS-EEEECCCCHHHHHHHHHHH
T ss_pred EecCCcccCceeeeCCceEEEE-CcHHHHHHHHHHHHHHHHHH------HHcCCCcccCc-EEEECCCChHHHHHHHHHc
Confidence 1121100 01222 23332222222333333333 4557886 888 9999999999999999988
Q ss_pred hhhhhccccCchhhHHhhhcCCCCCCCcchhhhhhhHHHHHHHHHHHHhhhhcCCCcccccccCccccchHHHHHHHHHh
Q 012253 266 FFNDFLRNASSVDEIAKEKLAPYSTLSDVESYQSRDLEKASQQVAKQLYDLKVQPSTLIPKQVGNMYTASLYAAFASLLH 345 (467)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~l~~~~g~~~e~~~~~~~~~k~~~~~~~~~~~~~~~~s~~~~~~~GN~~taS~~l~L~~~l~ 345 (467)
|+++++.+. + +...+++|||+|||+|++|..+++
T Consensus 318 ------------------------gl~~ek~~~---------s-------------~~~l~~~GNtssAsip~~L~~~~~ 351 (393)
T 3ov2_A 318 ------------------------QLSPDKLST---------A-------------RHVFTEYGNMQSATVYFVMDELRK 351 (393)
T ss_dssp ------------------------TCCTTTTHH---------H-------------HHHHHHHCBCGGGHHHHHHHHHHH
T ss_pred ------------------------CCCHHHHHH---------H-------------HHHHHHhCChHHhHHHHHHHHHHH
Confidence 888886531 1 112389999999999999999987
Q ss_pred h---cCcCCCC---CEEEEEEeccccceeeEEEEEec
Q 012253 346 E---KHSSLEG---KRVIMFSYGSGLTATMFSLQLQE 376 (467)
Q Consensus 346 ~---~~~~~~G---~~ill~syGsG~~~~~~~~~~~~ 376 (467)
+ .+++++| ++|+|++||+|++|+++++++.+
T Consensus 352 ~~~~~g~~~~G~~~d~vll~~fG~G~t~~~~ll~~~~ 388 (393)
T 3ov2_A 352 RSAVEGRSTTGDGLQWGVLLGFGPGLSIETVVLRSMP 388 (393)
T ss_dssp HHHHTTCSBTTTTCSEEEEEEEETTTEEEEEEEEECB
T ss_pred hhhhcCCcCCCCCCCeEEEEEECccceeeeeeeEEcc
Confidence 4 2677889 99999999999999999999987
|
| >1ted_A PKS18; thiolase fold, substrate binding tunnel, transferase; HET: MYR; 2.25A {Mycobacterium tuberculosis} SCOP: c.95.1.2 PDB: 1tee_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-41 Score=344.43 Aligned_cols=311 Identities=17% Similarity=0.146 Sum_probs=241.1
Q ss_pred CceeEEeEEEEecCCceeehhHHhhhhCCCc---------Cee--EEeccceEe-eccCC--------------------
Q 012253 6 PKNVGILALDIYFPPTCVLQEALEVHDGVSK---------GKY--TVGLGQDCM-AFCSE-------------------- 53 (467)
Q Consensus 6 ~~~vgI~ai~~y~P~~~v~~~el~~~~g~~~---------~k~--~~Gig~r~~-av~~~-------------------- 53 (467)
.++++|.+++.|+|+++++++++++..+... +|+ ++||++|++ +.+++
T Consensus 30 ~~~~~I~~ig~~~P~~~v~n~~l~~~~~~~~~~~~~~~~~~~i~~~tGI~~R~~~a~~~~~~~~~~~~~p~~~~~r~~~~ 109 (393)
T 1ted_A 30 TTVAVIEGLATGTPRRVVNQSDAADRVAELFLDPGQRERIPRVYQKSRITTRRMAVDPLDAKFDVFRREPATIRDRMHLF 109 (393)
T ss_dssp CCEEEEEEEEEECCSCEEEHHHHHHHHHTC----CCTTHHHHHHHTSCCSEEECSSCTTSTTHHHHTTCSSCHHHHHHHH
T ss_pred CcccEEEEeeeeCCCcccCHHHHHHHHHHhcccccHHHHHHHHHHhCCcCcceeeecChHhcccccccCCCCHHHHHHHH
Confidence 3569999999999999999999998876543 244 479998886 53210
Q ss_pred CCCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHhcccCCCCeeEEee-CCcChHHHHHHHHHH
Q 012253 54 VEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDS-TNACYGGTAALFNCV 132 (467)
Q Consensus 54 ~Ed~~~ma~~Aa~~aL~~agi~~~~Id~Li~~Tes~~~~~ps~a~~v~~~Lgl~G~~~~~~~di-~~aC~gg~~AL~~A~ 132 (467)
+++..+|+++|+++||+++|+++++||.||++|+++ +..|+++.+|+..||+ +..+.++++ .++|+|++.||..|.
T Consensus 110 ~~~~~~la~~Aa~~aL~~agl~~~~Id~vi~~t~~~-~~~p~~a~~v~~~lGl--~~~~~~~~v~~~aCas~~~Al~~A~ 186 (393)
T 1ted_A 110 YEHAVPLAVDVSKRALAGLPYRAAEIGLLVLATSTG-FIAPGVDVAIVKELGL--SPSISRVVVNFMGCAAAMNALGTAT 186 (393)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCCGGGEEEEEEEESSC-CCSSCHHHHHHHHHTC--CTTCEEEEEESCGGGHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHcCCCHHHCCEEEEEEeCC-CccChHHHHHHHHcCc--CCCcceeEeccchhHHHHHHHHHHH
Confidence 478899999999999999999999999999999999 6789999999999998 556889998 899999999999999
Q ss_pred HHHHhCCCCCCEEEEEEeecc-cccCC-CC------CCccccceeEEEecCCCCc-----eeecccccc--c--ccC-cc
Q 012253 133 NWVESASWDGRYGLVVCTDSA-VYAEG-PA------RPTGGAAAVAMLIGPDAPI-----AFESKLRGS--H--MSH-AY 194 (467)
Q Consensus 133 ~~l~a~~~~~~~aLVV~sD~~-~y~~~-~~------~~t~GdGAvA~Ll~~~~~~-----~~~~~~~~~--~--~~~-~~ 194 (467)
.+|++|.. ++||||++|.+ ...++ .+ ..+|||||+|+||++.+.. .+. .+.+. . ... ..
T Consensus 187 ~~i~~G~~--~~vLv~g~e~~s~~~~~~~~r~~~~~~~lfGDGA~A~vL~~~~~~~~~~~~~~-~i~~~~~~~~~d~~~~ 263 (393)
T 1ted_A 187 NYVRAHPA--MKALVVCIELCSVNAVFADDINDVVIHSLFGDGCAALVIGASQVQEKLEPGKV-VVRSSFSQLLDNTEDG 263 (393)
T ss_dssp HHHHHSTT--CEEEEEEEEECGGGCCCCSSHHHHHHHHHBCEEEEEEEEEEECTTSCCCTTCE-EEEEEEEEECTTCTTS
T ss_pred HHHHcCCC--CEEEEEEEEeccccCCCCCCHHHhhhhhhhcCccEEEEEecCCCccccCccee-eeeccceEEcCCchhh
Confidence 99999965 99999999987 22222 22 3578999999999876421 000 01111 1 110 12
Q ss_pred cccccCCCCCCceecCcchHHHHHHHHHHHHHHHHHHHHhhhcCCCCccccceeccCCchHHHHHHHHHhhhhhhhcccc
Q 012253 195 DFYKPNLASEYPVVDGKLSQTCYLMALDSCYKYFCQKFEKLEGRQFSMLDVDYFVFHSPYNKLVQKSFARLFFNDFLRNA 274 (467)
Q Consensus 195 df~~p~~~~~~~~vdG~~s~~~y~~a~~~~~~~~~~~~~~~~~~~~~~~d~d~~i~H~p~~k~~~k~~~~l~~~~~~~~~ 274 (467)
++|++. ...+..++|+.....+.+.+..+++.+++ +++++++|||+|++||++.++++.+.++|
T Consensus 264 ~~~~~~-~~g~~~~~g~~v~~~~~~~~~~~i~~aL~------~agl~~~dId~~~~H~~~~~i~d~~~~~l--------- 327 (393)
T 1ted_A 264 IVLGVN-HNGITCELSENLPGYIFSGVAPVVTEMLW------DNGLQISDIDLWAIHPGGPKIIEQSVRSL--------- 327 (393)
T ss_dssp EEEEEE-TTEEEEEECTTHHHHHHHHHHHHHHHHHH------HTTCCGGGCSCEEECCSCHHHHHHHHHHH---------
T ss_pred ccceec-CCCeEEecCchHHHHHHHHHHHHHHHHHH------HcCCCHhHCCEEEECCCcHHHHHHHHHHc---------
Confidence 233332 11244557877766566666666666554 44799999999999999999999988887
Q ss_pred CchhhHHhhhcCCCCCCCcchhhhhhhHHHHHHHHHHHHhhhhcCCCcccccccCccccchHHHHHHHHHhhcCcC-CCC
Q 012253 275 SSVDEIAKEKLAPYSTLSDVESYQSRDLEKASQQVAKQLYDLKVQPSTLIPKQVGNMYTASLYAAFASLLHEKHSS-LEG 353 (467)
Q Consensus 275 ~~~~~~~~~~l~~~~g~~~e~~~~~~~~~k~~~~~~~~~~~~~~~~s~~~~~~~GN~~taS~~l~L~~~l~~~~~~-~~G 353 (467)
|+++++.+. ++...+++|||++||+|++|.+++++ +++ ++|
T Consensus 328 ---------------gl~~~k~~~----------------------s~~~~~~~GNt~sAsi~~~L~~~~~~-g~~~~~G 369 (393)
T 1ted_A 328 ---------------GISAELAAQ----------------------SWDVLARFGNMLSVSLIFVLETMVQQ-AESAKAI 369 (393)
T ss_dssp ---------------TCCGGGGHH----------------------HHHHHHHHCBCTHHHHHHHHHHHHHS-CSSSSSS
T ss_pred ---------------CCCHHHHHH----------------------HHHHHHhhCCchHhHHHHHHHHHHhc-CccCCCC
Confidence 787775421 11122799999999999999999998 777 599
Q ss_pred CEEEEEEeccccceeeEEEEEec
Q 012253 354 KRVIMFSYGSGLTATMFSLQLQE 376 (467)
Q Consensus 354 ~~ill~syGsG~~~~~~~~~~~~ 376 (467)
++|++++||+|++|++++++|..
T Consensus 370 d~vll~~~G~G~t~~~~~l~~~~ 392 (393)
T 1ted_A 370 STGVAFAFGPGVTVEGMLFDIIR 392 (393)
T ss_dssp EEEEEEEEETTTEEEEEEEEECC
T ss_pred CeEEEEEeccchhhhhhheeecc
Confidence 99999999999999999999874
|
| >2ebd_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, aquifex VF5, lipid metabolism, structural genomics; 2.10A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-39 Score=323.37 Aligned_cols=302 Identities=16% Similarity=0.175 Sum_probs=241.7
Q ss_pred ceeEEeEEEEecCCceeehhHHhhhhCCCcCeeE--EeccceEeeccCCCCCHHHHHHHHHHHHHHHcCCCcCCcCEEEE
Q 012253 7 KNVGILALDIYFPPTCVLQEALEVHDGVSKGKYT--VGLGQDCMAFCSEVEDVISMSLTVVTSLLEKYKIDPTQIGRLEV 84 (467)
Q Consensus 7 ~~vgI~ai~~y~P~~~v~~~el~~~~g~~~~k~~--~Gig~r~~av~~~~Ed~~~ma~~Aa~~aL~~agi~~~~Id~Li~ 84 (467)
|+++|.++++|+|+.+++++++++..+.+++|+. .||.+|+++ .+ ++..+|+++|++++|+++|+++++||.|++
T Consensus 1 m~~~I~~~g~~~P~~~~~~~~~~~~~~~~~~~i~~~~Gi~~r~~~--~~-~~~~~l~~~a~~~al~~ag~~~~~id~v~~ 77 (309)
T 2ebd_A 1 MGTKIIGTGVYLPKNVLTNFDLEKIVDTSDEWITTRTGIKERRIA--KE-ETITYMATQAAKEALREANLSPEELDLIIL 77 (309)
T ss_dssp CCEEEEEEEEECCSEEEEHHHHHTTSSCCHHHHHHHHCCCEEEEC--SS-CCHHHHHHHHHHHHHHHHTCCGGGCSEEEE
T ss_pred CceEEEEEEEECCCceEcHHHHHHHcCCCHHHHHHHhCceeeeec--CC-CCHHHHHHHHHHHHHHHcCCCHHHCCEEEE
Confidence 4689999999999999999999998888777773 588877754 43 899999999999999999999999999999
Q ss_pred EeccCCCCCCcHHHHHHHHhcccCCCCeeEEeeCCcChHHHHHHHHHHHHHHhCCCCCCEEEEEEeecc-cccCC---CC
Q 012253 85 GSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDSA-VYAEG---PA 160 (467)
Q Consensus 85 ~Tes~~~~~ps~a~~v~~~Lgl~G~~~~~~~di~~aC~gg~~AL~~A~~~l~a~~~~~~~aLVV~sD~~-~y~~~---~~ 160 (467)
+|.++++..|+.+.+|+..||+ +.+.++++.++|++++.||..|..+|++|.. ++|||+++|.. .+.++ ..
T Consensus 78 ~~~~~~~~~~~~a~~v~~~lgl---~~~~~~~v~~~C~s~~~al~~A~~~i~~g~~--~~vlv~g~e~~s~~~~~~~~~~ 152 (309)
T 2ebd_A 78 ATLTPQKRFPSTACLVQAQLKA---KGVYAFDISAACSGFIYALDIADSFIKSGKA--KNVLVIGAEKLSEAVDWEDRST 152 (309)
T ss_dssp ECSSCSSSSSCHHHHHHHHHTC---TTCEEEEEECGGGHHHHHHHHHHHHHHTTSC--SEEEEEEEEEGGGTCCTTCTTT
T ss_pred EcCCCCCCCCcHHHHHHHHhCC---CCceEEecCccchHHHHHHHHHHHHHHCCCC--CEEEEEEecccccccCccchhh
Confidence 9999988889999999999998 4478999999999999999999999999965 99999999987 32222 23
Q ss_pred CCccccceeEEEecCCCC-ceeecccccccccCcccccccCCCCCCceecCcchHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 012253 161 RPTGGAAAVAMLIGPDAP-IAFESKLRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKYFCQKFEKLEGRQ 239 (467)
Q Consensus 161 ~~t~GdGAvA~Ll~~~~~-~~~~~~~~~~~~~~~~df~~p~~~~~~~~vdG~~s~~~y~~a~~~~~~~~~~~~~~~~~~~ 239 (467)
..++||||+|+||++.+. -.+.....++.......+..|. ..++.++|+.+...+.+.+..+++..+++. +
T Consensus 153 ~~~~gdGaaA~vL~~~~~~~~i~~~~~~~~g~~~~~~~~p~--~~~~~~~g~~~~~~~~~~~~~~i~~al~~a------g 224 (309)
T 2ebd_A 153 CVLFGDGAGAVVVTRSEDKSDILATRMYAEGSLEELLHADN--CGYIRMKGRELFKVAVRSMEEVCREVLEKA------G 224 (309)
T ss_dssp TTTBCEEEEEEEEEECSSSCEEEEEEEEECGGGGGGEEECT--TCCEEECHHHHHHHHHHHHHHHHHHHHHHH------T
T ss_pred ccccccccEEEEEEecCCCCceeEEEEEecCCccceeEeCC--CCeEEEccHHHHHHHHHHHHHHHHHHHHHc------C
Confidence 467899999999988753 1111101111211112233442 235677888776666666666666665544 6
Q ss_pred CCccccceeccCCchHHHHHHHHHhhhhhhhccccCchhhHHhhhcCCCCCCCcchhhhhhhHHHHHHHHHHHHhhhhcC
Q 012253 240 FSMLDVDYFVFHSPYNKLVQKSFARLFFNDFLRNASSVDEIAKEKLAPYSTLSDVESYQSRDLEKASQQVAKQLYDLKVQ 319 (467)
Q Consensus 240 ~~~~d~d~~i~H~p~~k~~~k~~~~l~~~~~~~~~~~~~~~~~~~l~~~~g~~~e~~~~~~~~~k~~~~~~~~~~~~~~~ 319 (467)
++++|||++++|+++.++.+.+.+.+ |++.++.+
T Consensus 225 l~~~did~~~~H~~~~~~~~~~~~~l------------------------g~~~~~~~---------------------- 258 (309)
T 2ebd_A 225 VKPEEVSLVIPHQANVRIINALAEKL------------------------NIPKEKVF---------------------- 258 (309)
T ss_dssp CCGGGCSEEEECCSCHHHHHHHHHHT------------------------TCCGGGBC----------------------
T ss_pred CCHHHCCEEEEcCCCHHHHHHHHHHh------------------------CCCHHHhh----------------------
Confidence 99999999999999999998877666 56655431
Q ss_pred CCcccccccCccccchHHHHHHHHHhhcCcCCCCCEEEEEEeccccceeeEEEEE
Q 012253 320 PSTLIPKQVGNMYTASLYAAFASLLHEKHSSLEGKRVIMFSYGSGLTATMFSLQL 374 (467)
Q Consensus 320 ~s~~~~~~~GN~~taS~~l~L~~~l~~~~~~~~G~~ill~syGsG~~~~~~~~~~ 374 (467)
+ ...++||+++||++++|.+++++ +++++|+++++++||+|+++++.+++|
T Consensus 259 -~--~~~~~Gh~~~As~~~~L~~~~~~-g~~~~G~~~l~~~~G~G~~~~~~~l~~ 309 (309)
T 2ebd_A 259 -V--NIQKYGNTSAASIPIALHEAIKE-GKVKRGDLILMTAMGGGLTWGAVLLRY 309 (309)
T ss_dssp -C--CHHHHCBCGGGHHHHHHHHHHHT-TCCCTTCEEEEEEEETTTEEEEEEEEC
T ss_pred -h--hHhhhcchHHHHHHHHHHHHHHc-CCCCCCCEEEEEEEchhhhhEEEEEEC
Confidence 1 12689999999999999999998 788899999999999999999999986
|
| >1zow_A 3-oxoacyl-[acyl-carrier-protein] synthase III; FABH, fatty acid biosynthesis, transferase; 2.00A {Staphylococcus aureus subsp} PDB: 3il7_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-39 Score=323.23 Aligned_cols=305 Identities=17% Similarity=0.216 Sum_probs=241.2
Q ss_pred ceeEEeEEEEecCCceeehhHHhhhhCCCcCee--EEeccceEeeccCCCCCHHHHHHHHHHHHHHHcCCCcCCcCEEEE
Q 012253 7 KNVGILALDIYFPPTCVLQEALEVHDGVSKGKY--TVGLGQDCMAFCSEVEDVISMSLTVVTSLLEKYKIDPTQIGRLEV 84 (467)
Q Consensus 7 ~~vgI~ai~~y~P~~~v~~~el~~~~g~~~~k~--~~Gig~r~~av~~~~Ed~~~ma~~Aa~~aL~~agi~~~~Id~Li~ 84 (467)
|+++|.++++|+|+++++++++++..+.+++|+ ++||++|+ +..++++..+|+++|++++|+++|+++++||.|++
T Consensus 1 m~~~I~~~g~~~P~~~~~~~~~~~~~~~~~~~i~~~~gi~~r~--~~~~~~~~~~l~~~a~~~al~~ag~~~~~id~vi~ 78 (313)
T 1zow_A 1 MNVGIKGFGAYAPEKIIDNAYFEQFLDTSDEWISKMTGIKERH--WADDDQDTSDLAYEASVKAIADAGIQPEDIDMIIV 78 (313)
T ss_dssp CCEEEEEEEEECCSCEEEGGGGGGTSSCCHHHHHHHHCCSEEE--CCCTTCCHHHHHHHHHHHHHHHHTCCGGGCCEEEE
T ss_pred CceEEEEEEEECCCccccHHHHHHhcCCCHHHHHHhhCceEEE--ecCCCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEE
Confidence 468999999999999999999999888887777 46888776 44678999999999999999999999999999999
Q ss_pred EeccCCCCCCcHHHHHHHHhcccCCCCeeEEeeCCcChHHHHHHHHHHHHHHhCCCCCCEEEEEEeecc-cccCCCC---
Q 012253 85 GSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDSA-VYAEGPA--- 160 (467)
Q Consensus 85 ~Tes~~~~~ps~a~~v~~~Lgl~G~~~~~~~di~~aC~gg~~AL~~A~~~l~a~~~~~~~aLVV~sD~~-~y~~~~~--- 160 (467)
+|.++++..|+++.+|+..||+ +++.++++.++|++++.||..|..+|++|.. ++|||+++|.. ...++.+
T Consensus 79 ~~~~~~~~~~~~a~~v~~~lgl---~~~~~~~v~~aCas~~~al~~A~~~i~~g~~--~~vLv~g~e~~s~~~~~~d~~~ 153 (313)
T 1zow_A 79 ATATGDMPFPTVANMLQERLGT---GKVASMDQLAACSGFMYSMITAKQYVQSGDY--HNILVVGADKLSKITDLTDRST 153 (313)
T ss_dssp ECSSCSCSSSCHHHHHHHHHTC---CSCCEEEEECGGGHHHHHHHHHHHHHHTTSC--SCEEEEEEEEGGGTCCTTCHHH
T ss_pred EcCCCCCCCCcHHHHHHHHhCC---CCCcEEEECCcCHHHHHHHHHHHHHHHCCCC--CEEEEEEEcccccccCcccccc
Confidence 9999988889999999999998 4478999999999999999999999999965 99999999986 3333322
Q ss_pred CCccccceeEEEecCCCC-ceeecccccccccCcccccccCCCCCCceecCcchHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 012253 161 RPTGGAAAVAMLIGPDAP-IAFESKLRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKYFCQKFEKLEGRQ 239 (467)
Q Consensus 161 ~~t~GdGAvA~Ll~~~~~-~~~~~~~~~~~~~~~~df~~p~~~~~~~~vdG~~s~~~y~~a~~~~~~~~~~~~~~~~~~~ 239 (467)
..++||||+|+||++.+. ..+......++......++.|.. ..+..++|+.....+.+.+..+++..++ +++
T Consensus 154 ~~~~gdGa~A~vl~~~~~~~~i~~~~~~~~g~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~i~~al~------~ag 226 (313)
T 1zow_A 154 AVLFGDGAGAVIIGEVSEGRGIISYEMGSDGTGGKHLYLDKD-TGKLKMNGREVFKFAVRIMGDASTRVVE------KAN 226 (313)
T ss_dssp HTTBCEEEEEEEEEECSTTCEEEEEEEEECGGGGGGEEECTT-TCCEEECHHHHHHHHHHHHHHHHHHHHH------HTT
T ss_pred eeeeccceEEEEEEecCCCCceeEEEEEEcCCCcCeEEecCC-CCeeEeccHHHHHHHHHHHHHHHHHHHH------HcC
Confidence 367899999999987652 11110001111111122344431 1235567776655555555555555443 457
Q ss_pred CCccccceeccCCchHHHHHHHHHhhhhhhhccccCchhhHHhhhcCCCCCCCcchhhhhhhHHHHHHHHHHHHhhhhcC
Q 012253 240 FSMLDVDYFVFHSPYNKLVQKSFARLFFNDFLRNASSVDEIAKEKLAPYSTLSDVESYQSRDLEKASQQVAKQLYDLKVQ 319 (467)
Q Consensus 240 ~~~~d~d~~i~H~p~~k~~~k~~~~l~~~~~~~~~~~~~~~~~~~l~~~~g~~~e~~~~~~~~~k~~~~~~~~~~~~~~~ 319 (467)
++++|||++++|+++.++.+.+.+.| |++.++.+
T Consensus 227 l~~~did~~~~H~~~~~~~d~~~~~l------------------------g~~~~~~~---------------------- 260 (313)
T 1zow_A 227 LTSDDIDLFIPHQANIRIMESARERL------------------------GISKDKMS---------------------- 260 (313)
T ss_dssp CCGGGCSEEEECCSCHHHHHHHHHHH------------------------TCCGGGBC----------------------
T ss_pred CCHHHCCEEEEcCCCHHHHHHHHHHh------------------------CCCHHHHH----------------------
Confidence 99999999999999999999887766 56655432
Q ss_pred CCcccccccCccccchHHHHHHHHHhhcCcCCCCCEEEEEEeccccceeeEEEEEe
Q 012253 320 PSTLIPKQVGNMYTASLYAAFASLLHEKHSSLEGKRVIMFSYGSGLTATMFSLQLQ 375 (467)
Q Consensus 320 ~s~~~~~~~GN~~taS~~l~L~~~l~~~~~~~~G~~ill~syGsG~~~~~~~~~~~ 375 (467)
+ ...++||+++||++++|..++++ +++++|+++++++||+|+++++.+++|.
T Consensus 261 -~--~~~~~Gh~~~as~~~~L~~~~~~-~~~~~g~~vl~~~~G~G~t~~~~~l~~~ 312 (313)
T 1zow_A 261 -V--SVNKYGNTSAASIPLSIDQELKN-GKLKDDDTIVLVGFGGGLTWGAMTIKWG 312 (313)
T ss_dssp -C--CHHHHCBCGGGHHHHHHHHHHHT-TCCCTTCEEEEEEEETTTEEEEEEEECC
T ss_pred -H--hHhhhCchHHHHHHHHHHHHHHc-CCCCCCCEEEEEEEchhhhheEEEEEeC
Confidence 0 12689999999999999999998 7888999999999999999999999985
|
| >1u6e_A 3-oxoacyl-[acyl-carrier-protein] synthase III; transferase; 1.85A {Mycobacterium tuberculosis} SCOP: c.95.1.2 c.95.1.2 PDB: 1u6s_A* 1m1m_A 1hzp_A* 2qnx_A* 2qnz_A* 2qo1_A* 2qx1_A* 2qo0_A* 2qny_A* 2ahb_A 2aj9_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-39 Score=324.01 Aligned_cols=307 Identities=17% Similarity=0.186 Sum_probs=239.1
Q ss_pred ceeEEeEEEEecCCceeehhHHhhhhCCCcCeeE--EeccceEeeccCCCCCHHHHHHHHHHHHHHHcCCCcCCcCEEEE
Q 012253 7 KNVGILALDIYFPPTCVLQEALEVHDGVSKGKYT--VGLGQDCMAFCSEVEDVISMSLTVVTSLLEKYKIDPTQIGRLEV 84 (467)
Q Consensus 7 ~~vgI~ai~~y~P~~~v~~~el~~~~g~~~~k~~--~Gig~r~~av~~~~Ed~~~ma~~Aa~~aL~~agi~~~~Id~Li~ 84 (467)
++++|.++++|+|+.+++++++++..+.+.+|+. .||..|++ +.++++..+|+++|++++|+++|+++++||.|++
T Consensus 11 ~~~~I~g~g~~~P~~~~~~~~~~~~~~~~~~~i~~~~gi~~r~~--~~~~~~~~~la~~A~~~al~~ag~~~~~id~vi~ 88 (335)
T 1u6e_A 11 RSVGLLSVGAYRPERVVTNDEICQHIDSSDEWIYTRTGIKTRRF--AADDESAASMATEACRRALSNAGLSAADIDGVIV 88 (335)
T ss_dssp SCEEEEEEEEECCSEEEEHHHHTTSSSCCHHHHHHHHCCSEEEE--CCTTCCHHHHHHHHHHHHHHHHTCCGGGCCEEEE
T ss_pred CceEEEEEEEECCCceecHHHHHHHhCCCHHHHHHhcCCceEee--cCCCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEE
Confidence 4699999999999999999999998887777763 57777764 4678999999999999999999999999999999
Q ss_pred EeccCCCCCCcHHHHHHHHhcccCCCCeeEEeeCCcChHHHHHHHHHHHHHHhCCCCCCEEEEEEeecc-cccCC---CC
Q 012253 85 GSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDSA-VYAEG---PA 160 (467)
Q Consensus 85 ~Tes~~~~~ps~a~~v~~~Lgl~G~~~~~~~di~~aC~gg~~AL~~A~~~l~a~~~~~~~aLVV~sD~~-~y~~~---~~ 160 (467)
+|.++++..|+++.+|+..||+ +++.++++.++|+|++.||..|..+|++|.. ++|||+++|.. .+.++ ..
T Consensus 89 ~t~~~~~~~~~~a~~v~~~lgl---~~~~~~~v~~aC~s~~~al~~A~~~i~~g~~--~~vLv~g~e~~s~~~~~~d~~~ 163 (335)
T 1u6e_A 89 TTNTHFLQTPPAAPMVAASLGA---KGILGFDLSAGAAGFGYALGAAADMIRGGGA--ATMLVVGTEKLSPTIDMYDRGN 163 (335)
T ss_dssp ECSCCCCSSSCHHHHHHHHHTC---TTSEEEEEECGGGHHHHHHHHHHHHHHHTSC--SSEEEEEEEECGGGCCTTCTTT
T ss_pred EcCCCCCCCChHHHHHHHHhCC---CCCcEeeeccccHHHHHHHHHHHHHHHcCCC--CEEEEEEEcccccccCcccccc
Confidence 9999988889999999999998 5689999999999999999999999999965 99999999987 33232 23
Q ss_pred CCccccceeEEEecCCCC--c-eeecccccccccCc-----ccccc--cCCCCCCceecCcchHHHHHHHHHHHHHHHHH
Q 012253 161 RPTGGAAAVAMLIGPDAP--I-AFESKLRGSHMSHA-----YDFYK--PNLASEYPVVDGKLSQTCYLMALDSCYKYFCQ 230 (467)
Q Consensus 161 ~~t~GdGAvA~Ll~~~~~--~-~~~~~~~~~~~~~~-----~df~~--p~~~~~~~~vdG~~s~~~y~~a~~~~~~~~~~ 230 (467)
..++||||+|+||++.+. + ....+..+.+.... +..|. |.....+..++|+.....+...+..+++.+++
T Consensus 164 ~~~~gDGA~A~vl~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~al~ 243 (335)
T 1u6e_A 164 CFIFADGAAAVVVGETPFQGIGPTVAGSDGEQADAIRQDIDWITFAQNPSGPRPFVRLEGPAVFRWAAFKMGDVGRRAMD 243 (335)
T ss_dssp TTTBCEEEEEEEEEECSSCCBCCCEEEECGGGGGGEEESSCHHHHHTSTTSCCCCEEECHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceEeccccEEEEEEecCCCCeeEEEEEEcCCcccceeecCCccCcCCCccCccceEEEcCHHHHHHHHHHHHHHHHHHHH
Confidence 578999999999987642 1 11100111111110 00111 11111235567765544344455555555544
Q ss_pred HHHhhhcCCCCccccceeccCCchHHHHHHHHHhhhhhhhccccCchhhHHhhhcCCCCCCCcc-hhhhhhhHHHHHHHH
Q 012253 231 KFEKLEGRQFSMLDVDYFVFHSPYNKLVQKSFARLFFNDFLRNASSVDEIAKEKLAPYSTLSDV-ESYQSRDLEKASQQV 309 (467)
Q Consensus 231 ~~~~~~~~~~~~~d~d~~i~H~p~~k~~~k~~~~l~~~~~~~~~~~~~~~~~~~l~~~~g~~~e-~~~~~~~~~k~~~~~ 309 (467)
+ ++++++|||++++|+++.++++.+.+.| |++++ +.+
T Consensus 244 ~------agl~~~dId~~~~H~~~~~~~~~~~~~l------------------------g~~~~~~~~------------ 281 (335)
T 1u6e_A 244 A------AGVRPDQIDVFVPHQANSRINELLVKNL------------------------QLRPDAVVA------------ 281 (335)
T ss_dssp H------HTCCGGGCCEEEECCSCHHHHHHHHHHH------------------------TCCTTCEEC------------
T ss_pred H------cCCCHHHCCEEEECCCCHHHHHHHHHHc------------------------CCCchhhhh------------
Confidence 4 4799999999999999999999988877 55554 221
Q ss_pred HHHHhhhhcCCCcccccccCccccchHHHHHHHHHhhcCcCCCCCEEEEEEeccccceeeEEEEEec
Q 012253 310 AKQLYDLKVQPSTLIPKQVGNMYTASLYAAFASLLHEKHSSLEGKRVIMFSYGSGLTATMFSLQLQE 376 (467)
Q Consensus 310 ~~~~~~~~~~~s~~~~~~~GN~~taS~~l~L~~~l~~~~~~~~G~~ill~syGsG~~~~~~~~~~~~ 376 (467)
.+ .+++||+++||++++|.+++++ +++++|+++++++||+|+++++++++|.+
T Consensus 282 ----------~~---~~~~Gnt~sAs~~~~L~~~~~~-~~~~~g~~~l~~~~G~G~t~~~~vl~~~~ 334 (335)
T 1u6e_A 282 ----------ND---IEHTGNTSAASIPLAMAELLTT-GAAKPGDLALLIGYGAGLSYAAQVVRMPK 334 (335)
T ss_dssp ----------CT---HHHHCBCGGGHHHHHHHHHHHH-TSSCTTCEEEEEEEETTTEEEEEEEECCC
T ss_pred ----------hh---hhhhCcHHHHHHHHHHHHHHHc-CCCCCCCEEEEEEEehhheeEEEEEEeCC
Confidence 11 2689999999999999999998 77889999999999999999999999854
|
| >1u0m_A Putative polyketide synthase; type III polyketide synthase, PKS, bacterial, thiolase fold, beta-alpha-beta-alpha fold, catalytic triad; HET: 15P; 2.22A {Streptomyces coelicolor} SCOP: c.95.1.2 c.95.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-40 Score=340.63 Aligned_cols=308 Identities=14% Similarity=0.128 Sum_probs=231.6
Q ss_pred ceeEEeEEEEecCCceeehhHHhhhhCCC------c---Cee--EEeccceEeeccCC-----------------CCCHH
Q 012253 7 KNVGILALDIYFPPTCVLQEALEVHDGVS------K---GKY--TVGLGQDCMAFCSE-----------------VEDVI 58 (467)
Q Consensus 7 ~~vgI~ai~~y~P~~~v~~~el~~~~g~~------~---~k~--~~Gig~r~~av~~~-----------------~Ed~~ 58 (467)
|+++|.++++|+|+++++++++++..+.. . +|+ ++||.+|+++ .+ +++..
T Consensus 8 ~m~~I~gig~~~P~~~v~~~~l~~~~~~~~~~~~~~~~~~~i~~~~GI~~R~~~--~~~~~~~~~~~~~~r~~~~~~~~~ 85 (382)
T 1u0m_A 8 FMATLCRPSVSVPEHVITMEETLELARRRHTDHPQLPLALRLIENTGVRTRHIV--QPIEDTLEHPGFEDRNKVYEREAK 85 (382)
T ss_dssp --CEECCCEEECCSEEEEHHHHHHHHHHHHTTCTTHHHHHHHHHHTCCCEEEES--SCHHHHTSCCCHHHHHHHHHHHHH
T ss_pred cceEEEEEEEeCCCcccCHHHHHHHHHHhccChhhHHHHHHHHHhcCCCcceee--cChhhhccCCChhHHHHHHHHHHH
Confidence 34899999999999999999999876543 1 233 4688888754 44 57789
Q ss_pred HHHHHHHHHHHHHcCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHhcccCCCCeeEEee-CCcChHHHHHHHHHHHHHHh
Q 012253 59 SMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDS-TNACYGGTAALFNCVNWVES 137 (467)
Q Consensus 59 ~ma~~Aa~~aL~~agi~~~~Id~Li~~Tes~~~~~ps~a~~v~~~Lgl~G~~~~~~~di-~~aC~gg~~AL~~A~~~l~a 137 (467)
+|+++|+++||+++|+++++||.||++|.++ +..|+++.+|+..||+ +.++.++++ .++|+|++.||..|.++|++
T Consensus 86 ~la~~Aa~~aL~~agl~~~~id~vi~~t~~~-~~~p~~a~~v~~~lGl--~~~~~~~~v~~~aCss~~~Al~~A~~~i~~ 162 (382)
T 1u0m_A 86 SRVPAVIQRALDDAELLATDIDVIIYVSCTG-FMMPSLTAWLINEMGF--DSTTRQIPIAQLGCAAGGAAINRAHDFCTA 162 (382)
T ss_dssp HHHHHHHHHHHHHHTCCGGGCSEEEEECSSS-CCSSCHHHHHHHHTTC--CTTCEEEEECSCGGGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHCCEEEEEecCC-CCCCcHHHHHHHHhCC--CCCcceEEccCCcCHHHHHHHHHHHHHHHc
Confidence 9999999999999999999999999999998 6789999999999998 456899999 89999999999999999999
Q ss_pred CCCCCCEEEEEEeecc-cccCCCC--------CCccccceeEEEecCCCC--ceeecccccccccC-cccccccCCCCCC
Q 012253 138 ASWDGRYGLVVCTDSA-VYAEGPA--------RPTGGAAAVAMLIGPDAP--IAFESKLRGSHMSH-AYDFYKPNLASEY 205 (467)
Q Consensus 138 ~~~~~~~aLVV~sD~~-~y~~~~~--------~~t~GdGAvA~Ll~~~~~--~~~~~~~~~~~~~~-~~df~~p~~~~~~ 205 (467)
|.. ++||||++|.. .+.++.+ ..+|||||+|+||++.+. ..+......+.... ....|.... ..+
T Consensus 163 g~~--~~vLv~g~e~~s~~~~~~d~~~~~~~~~~lfGDGA~A~vL~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~-~g~ 239 (382)
T 1u0m_A 163 YPE--ANALIVACEFCSLCYQPTDLGVGSLLCNGLFGDGIAAAVVRGRGGTGVRLERNGSYLIPKTEDWIMYDVKA-TGF 239 (382)
T ss_dssp STT--CEEEEEEEEEGGGGCCTTCCSHHHHHHHHHBCEEEEEEEEETTTCSEEEEEEEEEEECSSCTTTEEEEEET-TEE
T ss_pred CCC--CEEEEEEEeccchhcCcccCCHHHhhccchhcCCcEEEEEeccCCCCcEEEEeeeEecCChHHhcCceecC-Cce
Confidence 955 99999999997 3222222 357899999999997653 11111001111110 011222110 011
Q ss_pred ceecCcchHHHHHHHHHHHHHHHHHHHHhhhcCCCCccccceeccCCchHHHHHHHHHhhhhhhhccccCchhhHHhhhc
Q 012253 206 PVVDGKLSQTCYLMALDSCYKYFCQKFEKLEGRQFSMLDVDYFVFHSPYNKLVQKSFARLFFNDFLRNASSVDEIAKEKL 285 (467)
Q Consensus 206 ~~vdG~~s~~~y~~a~~~~~~~~~~~~~~~~~~~~~~~d~d~~i~H~p~~k~~~k~~~~l~~~~~~~~~~~~~~~~~~~l 285 (467)
....++.....+.+.+. +++..+ ++++++++|||+|++||++.++++.+.++|
T Consensus 240 ~~~~~~~v~~~~~~~~~-~i~~aL------~~agl~~~dId~v~~H~~~~~i~d~~~~~l-------------------- 292 (382)
T 1u0m_A 240 HFLLDKRVPATMEPLAP-ALKELA------GEHGWDASDLDFYIVHAGGPRILDDLSTFL-------------------- 292 (382)
T ss_dssp EEEECTTTGGGHHHHHH-HHHHHH------HTTSCCSSCCSCCEEECSHHHHHHHHHHHS--------------------
T ss_pred EEEeCcHHHHHHHHHHH-HHHHHH------HHcCCCHHHCCEEEECCCCHHHHHHHHHHc--------------------
Confidence 12233433222334444 444443 456899999999999999999999888777
Q ss_pred CCCCCCCcchhhhhhhHHHHHHHHHHHHhhhhcCCCcccccccCccccchHHHHHHHHHhhcCcCCCCCEEEEEEecccc
Q 012253 286 APYSTLSDVESYQSRDLEKASQQVAKQLYDLKVQPSTLIPKQVGNMYTASLYAAFASLLHEKHSSLEGKRVIMFSYGSGL 365 (467)
Q Consensus 286 ~~~~g~~~e~~~~~~~~~k~~~~~~~~~~~~~~~~s~~~~~~~GN~~taS~~l~L~~~l~~~~~~~~G~~ill~syGsG~ 365 (467)
|+++++.+. ++...+++|||++||+|++|.+++++ +++++|++|++++||+|+
T Consensus 293 ----gl~~~k~~~----------------------s~~~~~~~Gnt~sAsi~~~L~~~~~~-g~~~~Gd~vll~~~G~G~ 345 (382)
T 1u0m_A 293 ----EVDPHAFRF----------------------SRATLTEYGNIASAVVLDALRRLFDE-GGVEEGARGLLAGFGPGI 345 (382)
T ss_dssp ----CSCGGGGHH----------------------HHHHHHHTCBCTTHHHHHHHHHHHHS-CCCCSSCCCEEEEEETTT
T ss_pred ----CCCHHHHHH----------------------HHHHHHHhCCchhhHHHHHHHHHHHh-cCCCCCCEEEEEEEcccc
Confidence 777775320 11123799999999999999999998 788899999999999999
Q ss_pred ceeeEEEEEec
Q 012253 366 TATMFSLQLQE 376 (467)
Q Consensus 366 ~~~~~~~~~~~ 376 (467)
+|++++++|..
T Consensus 346 t~~~~vl~~~~ 356 (382)
T 1u0m_A 346 TAEMSLGCWQT 356 (382)
T ss_dssp EEEEEEEEEEC
T ss_pred eeEEEEEEEee
Confidence 99999999986
|
| >3oit_A OS07G0271500 protein; type III polyketide synthases, transferase; 2.00A {Oryza sativa} PDB: 3ale_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-39 Score=332.24 Aligned_cols=306 Identities=18% Similarity=0.220 Sum_probs=218.7
Q ss_pred CceeEEeEEEEecCCceeehhHHhhhhC---CCcC---------ee--EEeccceEeeccCCCC----------------
Q 012253 6 PKNVGILALDIYFPPTCVLQEALEVHDG---VSKG---------KY--TVGLGQDCMAFCSEVE---------------- 55 (467)
Q Consensus 6 ~~~vgI~ai~~y~P~~~v~~~el~~~~g---~~~~---------k~--~~Gig~r~~av~~~~E---------------- 55 (467)
+..+.|.+++.|+|+++|+|+|+++..+ .+.+ ++ .+||.+|+++. ++|
T Consensus 8 ~~~~~I~~ig~~~P~~~v~n~e~~~~~~~~~~~~~~~~~~~~~~~i~~~tGI~~R~~~~--~~e~~~~~~~~~~~~~p~~ 85 (387)
T 3oit_A 8 DGLAAVLAIGTANPPNCVTQEEIPDFYFRVTNSDHLTALKDKFKRICQEMGVQRRYLHH--TEEMLSAHPEFVDRDAPSL 85 (387)
T ss_dssp SSCCEEEEEEEECCSEEEETTTHHHHHHHHTTCTTCHHHHHHHHHHHHTSSCCEEEESC--CHHHHHHCGGGTCTTSCCH
T ss_pred CCCeEEEEEEeeCCCceecHHHHHHHHHHHhCccchHHHHHHHHHHHHhcCcceeeeec--CHHHhccCccccccCCCCH
Confidence 3569999999999999999999998852 1221 33 37999888653 333
Q ss_pred ---------CHHHHHHHHHHHHHHHcCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHhcccCCCCe-eEEeeCCcChHHH
Q 012253 56 ---------DVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDI-EGVDSTNACYGGT 125 (467)
Q Consensus 56 ---------d~~~ma~~Aa~~aL~~agi~~~~Id~Li~~Tes~~~~~ps~a~~v~~~Lgl~G~~~~-~~~di~~aC~gg~ 125 (467)
++.+|+++|+++||+++|+++++||.||++|+++ +..|+++.+|++.||+ ++.+ +++|+.++|+|++
T Consensus 86 ~~r~~~~~~~~~~La~~Aa~~AL~~ag~~~~dId~li~~t~t~-~~~p~~a~~v~~~LGl--~~~~~~~~~~~~~C~~~~ 162 (387)
T 3oit_A 86 DARLDIAADAVPELAAEAAKKAIAEWGRPAADITHLVVTTNSG-AHVPGVDFRLVPLLGL--RPSVRRTMLHLNGCFAGC 162 (387)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTSCGGGCCEEEEEESSC-CEESCHHHHHHHHHTC--CTTCEEEEEECCGGGHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEEeeCC-CCcccHHHHHHHHhCC--CCCcceeeEECchhHHHH
Confidence 6899999999999999999999999999999999 6789999999999998 4555 4899999999999
Q ss_pred HHHHHHHHHHHhCCCCCCEEEEEEeecc--cccCCCC--------CCccccceeEEEecCCCC-c---eeeccccccc--
Q 012253 126 AALFNCVNWVESASWDGRYGLVVCTDSA--VYAEGPA--------RPTGGAAAVAMLIGPDAP-I---AFESKLRGSH-- 189 (467)
Q Consensus 126 ~AL~~A~~~l~a~~~~~~~aLVV~sD~~--~y~~~~~--------~~t~GdGAvA~Ll~~~~~-~---~~~~~~~~~~-- 189 (467)
.||.+|..+|++|.. ++||||++|.+ .+.++.+ ..+|||||+|+||+++++ . .+.....++.
T Consensus 163 ~al~~A~~~i~sg~~--~~vLvvg~E~~s~~~~~~~d~~~~~~~~~~lFGDGAaA~vl~~~~~~~~~~~~~~~~~~~~~~ 240 (387)
T 3oit_A 163 AALRLAKDLAENSRG--ARVLVVAAELTLMYFTGPDEGCFRTLLVQGLFGDGAAAVIVGADADDVERPLFEIVSAAQTII 240 (387)
T ss_dssp HHHHHHHHHHHSSTT--CEEEEEEEECGGGTCCCCCSSSCHHHHHHHHBCCEEEEEEEESSCCSSCCCCEEEEEEEEEEC
T ss_pred HHHHHHHHHHhcCCC--CEEEEEEEeccchhccCccccchHhhhcccccccceEEEEEecCCCcccCCceEEEecccEEe
Confidence 999999999999954 99999999998 4544333 246899999999998752 1 1110001110
Q ss_pred --ccCcccccccCCCCCCceecCcchHHHHHHHHHHHHHHHHHHHHhhhcC----CCCccccc--eeccCCchHHHHHHH
Q 012253 190 --MSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKYFCQKFEKLEGR----QFSMLDVD--YFVFHSPYNKLVQKS 261 (467)
Q Consensus 190 --~~~~~df~~p~~~~~~~~vdG~~s~~~y~~a~~~~~~~~~~~~~~~~~~----~~~~~d~d--~~i~H~p~~k~~~k~ 261 (467)
+.+.+++.....+. +..++ +.......+.+..+.+.++ +++ +++ |+| +|++||++.+|++.+
T Consensus 241 p~~~~~~~~~~~~~g~-~~~~~-~~v~~~~~~~~~~~~~~~L------~~~~~~~gl~--d~d~~~~v~Hq~n~~il~~v 310 (387)
T 3oit_A 241 PESDHALNMRFTERRL-DGVLG-RQVPGLIGDNVERCLLDMF------GPLLGGDGGG--GWNDLFWAVHPGSSTIMDQV 310 (387)
T ss_dssp TTCTTSEEEEECSSSE-EEEEC-TTHHHHHHHHHHHHHHHHT------GGGCC--------GGGSEEEECCCCHHHHHHH
T ss_pred CCChhhccceeecCCe-EEEEC-cHHHHHHHHHHHHHHHHHH------HhhcccCCCC--cccccEEEECCCCHHHHHHH
Confidence 01111111111111 11222 3332222333333333332 344 555 555 999999999999999
Q ss_pred HHhhhhhhhccccCchhhHHhhhcCCCCCCCcchhhhhhhHHHHHHHHHHHHhhhhcCCCcccccccCccccchHHHHHH
Q 012253 262 FARLFFNDFLRNASSVDEIAKEKLAPYSTLSDVESYQSRDLEKASQQVAKQLYDLKVQPSTLIPKQVGNMYTASLYAAFA 341 (467)
Q Consensus 262 ~~~l~~~~~~~~~~~~~~~~~~~l~~~~g~~~e~~~~~~~~~k~~~~~~~~~~~~~~~~s~~~~~~~GN~~taS~~l~L~ 341 (467)
.++| |+++++... ++...+++|||+|||+|++|.
T Consensus 311 ~~~L------------------------gl~~ek~~~----------------------s~~~l~~~GNtssAsip~~L~ 344 (387)
T 3oit_A 311 DAAL------------------------GLEPGKLAA----------------------SRRVLSDYGNMSGATVIFALD 344 (387)
T ss_dssp HHHH------------------------TCCTTTTHH----------------------HHHHHHHHCBCGGGHHHHHHH
T ss_pred HHHc------------------------CCCHHHHHH----------------------HHHHHHHhCchHHhHHHHHHH
Confidence 9998 788886531 111237999999999999999
Q ss_pred HHHhhcCcCCCC------CEEEEEEeccccceeeEEEEEec
Q 012253 342 SLLHEKHSSLEG------KRVIMFSYGSGLTATMFSLQLQE 376 (467)
Q Consensus 342 ~~l~~~~~~~~G------~~ill~syGsG~~~~~~~~~~~~ 376 (467)
.+++. .+++| ++|+|++||+|++|+++++++.+
T Consensus 345 ~~~~~--~~~~G~~g~~~d~vll~~fG~G~t~~~~ll~~~~ 383 (387)
T 3oit_A 345 ELRRQ--RKEAAAAGEWPELGVMMAFGPGMTVDAMLLHATS 383 (387)
T ss_dssp HHHHC------------CCEEEEEEEETTTEEEEEEEEECC
T ss_pred HHHHh--hhccCCCCCCCCEEEEEEecccceeeeeeeEecc
Confidence 98765 46677 89999999999999999999876
|
| >2h84_A Steely1; thiolase-fold, type III polyketide synthase, PKS, chalcone-S synthase superfamily, type I PKS; HET: P6G; 2.90A {Dictyostelium discoideum} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-39 Score=332.00 Aligned_cols=309 Identities=15% Similarity=0.154 Sum_probs=227.6
Q ss_pred CCCCceeEEeEEEEecCCceeehhHHhhhhC--C-C-------cCee--EEeccceEeeccCCC----------------
Q 012253 3 SWHPKNVGILALDIYFPPTCVLQEALEVHDG--V-S-------KGKY--TVGLGQDCMAFCSEV---------------- 54 (467)
Q Consensus 3 ~~~~~~vgI~ai~~y~P~~~v~~~el~~~~g--~-~-------~~k~--~~Gig~r~~av~~~~---------------- 54 (467)
+.++++++|.++++|+|+.+++++++++..+ . + .+++ ++||++|+++ .++
T Consensus 8 ~~~~~~v~I~g~g~~~P~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~Gi~~R~~~--~~~~~~~~~~~~~~~~~~~ 85 (374)
T 2h84_A 8 YKSNNNSFVLGIGISVPGEPISQQSLKDSISNDFSDKAETNEKVKRIFEQSQIKTRHLV--RDYTKPENSIKFRHLETIT 85 (374)
T ss_dssp ----CCCEEEEEEEECSSSCEEHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCCCEECCS--SCTTSGGGCGGGGGGCCHH
T ss_pred ccCCCCeEEEEEEEeCCCcccCHHHHHHHHHHhhccChHHHHHHHHHHHhCCcCcceee--cCccccccccccCChHHHH
Confidence 3446689999999999999999999998753 2 1 1233 3688888754 444
Q ss_pred -------CCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHhcccCCCCeeEEeeC-CcChHHHH
Q 012253 55 -------EDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDST-NACYGGTA 126 (467)
Q Consensus 55 -------Ed~~~ma~~Aa~~aL~~agi~~~~Id~Li~~Tes~~~~~ps~a~~v~~~Lgl~G~~~~~~~di~-~aC~gg~~ 126 (467)
++..+|+++|+++||+++|++|++||.||++|+++ +..|+++.+|+..||+ +.++.++++. +||+|++.
T Consensus 86 ~~~~~~~~~~~~la~~Aa~~al~~ag~~~~~id~vi~~t~~~-~~~p~~a~~v~~~lGl--~~~~~~~~v~~~aCss~~~ 162 (374)
T 2h84_A 86 DVNNQFKKVVPDLAQQACLRALKDWGGDKGDITHIVSVTSTG-IIIPDVNFKLIDLLGL--NKDVERVSLNLMGCLAGLS 162 (374)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCSCGGGCCEEEEEESSC-CCSSCHHHHHHHHHTC--CTTCEEEEEESCGGGHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEEeeCC-CCCCcHHHHHHHHcCc--CCCCceEEecCCcCHHHHH
Confidence 77899999999999999999999999999999997 5689999999999998 4568999997 89999999
Q ss_pred HHHHHHHHHHhCCCCCCEEEEEEeecc-ccc-CCCCC------CccccceeEEEecCCCCc----eeeccccccc-ccCc
Q 012253 127 ALFNCVNWVESASWDGRYGLVVCTDSA-VYA-EGPAR------PTGGAAAVAMLIGPDAPI----AFESKLRGSH-MSHA 193 (467)
Q Consensus 127 AL~~A~~~l~a~~~~~~~aLVV~sD~~-~y~-~~~~~------~t~GdGAvA~Ll~~~~~~----~~~~~~~~~~-~~~~ 193 (467)
||.+|..+|++|.. ++||||++|.. ... ++.++ .+|||||+|+||++.+.. .+.....++. ..+.
T Consensus 163 al~~A~~~i~~g~~--~~vLv~g~e~~s~~~~~~~dr~~~~~~~lfGDGA~A~vL~~~~~~~~~~~~~l~~~g~~~~~~~ 240 (374)
T 2h84_A 163 SLRTAASLAKASPR--NRILVVCTEVCSLHFSNTDGGDQMVASSIFADGSAAYIIGCNPRIEETPLYEVMCSINRSFPNT 240 (374)
T ss_dssp HHHHHHHHHTTCTT--CEEEEEEEECCGGGCCCSSSHHHHHHHHHBCCEEEEEEEESSCCTTCCCCEEEEEEEEEECSSC
T ss_pred HHHHHHHHHHcCCC--CEEEEEEEEecchhhcCCCCHHHHhhhhhhccCcEEEEEecCCCcccCCceeEEeeeeEEeCCC
Confidence 99999999999965 99999999997 322 33332 478999999999986521 0110001111 0000
Q ss_pred ccc--cccCCCCCCceecCcchHHHHHHHHHHHHHHHHHHHHhhhcCC------CCccccceeccCCchHHHHHHHHHhh
Q 012253 194 YDF--YKPNLASEYPVVDGKLSQTCYLMALDSCYKYFCQKFEKLEGRQ------FSMLDVDYFVFHSPYNKLVQKSFARL 265 (467)
Q Consensus 194 ~df--~~p~~~~~~~~vdG~~s~~~y~~a~~~~~~~~~~~~~~~~~~~------~~~~d~d~~i~H~p~~k~~~k~~~~l 265 (467)
.+. |.+. ...+....|+.......+.+..+++.++++ ++ ++++|||+| +||++.++++.+.++|
T Consensus 241 ~~~~~~~~~-~~g~~~~~~~~v~~~~~~~~~~~i~~~L~~------ag~~~~~~l~~~did~~-~H~~~~~i~d~~~~~l 312 (374)
T 2h84_A 241 ENAMVWDLE-KEGWNLGLDASIPIVIGSGIEAFVDTLLDK------AKLQTSTAISAKDCEFL-IHTGGKSILMNIENSL 312 (374)
T ss_dssp TTSEEEEEE-TTEEEEEECTTHHHHHHHHHHHHHHHHHHH------HTTTSCSCCCSSSSEEE-ECCCCHHHHHHHHHHT
T ss_pred cccceeEEe-cCcEEEEeCchHHHHHHHHHHHHHHHHHHh------cCCccccCCChhhcCEe-ECCCCHHHHHHHHHHc
Confidence 011 1111 001111134444333344455555555443 46 889999999 9999999999988877
Q ss_pred hhhhhccccCchhhHHhhhcCCCCCCCcchhhhhhhHHHHHHHHHHHHhhhhcCCCcccccccCccccchHHHHHHHHHh
Q 012253 266 FFNDFLRNASSVDEIAKEKLAPYSTLSDVESYQSRDLEKASQQVAKQLYDLKVQPSTLIPKQVGNMYTASLYAAFASLLH 345 (467)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~l~~~~g~~~e~~~~~~~~~k~~~~~~~~~~~~~~~~s~~~~~~~GN~~taS~~l~L~~~l~ 345 (467)
|+++++.+. ++.+.+++|||++||+|++|.++++
T Consensus 313 ------------------------gl~~~k~~~----------------------s~~~~~~~Gnt~sasi~~~L~~~~~ 346 (374)
T 2h84_A 313 ------------------------GIDPKQTKN----------------------TWDVYHAYGNMSSASVIFVMDHARK 346 (374)
T ss_dssp ------------------------TCCGGGGHH----------------------HHHHHHHHCBCTTHHHHHHHHHHHT
T ss_pred ------------------------CCCHHHHHH----------------------HHHHHHHhCCchhhHHHHHHHHHHh
Confidence 777775421 1112379999999999999999998
Q ss_pred hcCcCCCCCEEEEEEeccccceeeEEEEEe
Q 012253 346 EKHSSLEGKRVIMFSYGSGLTATMFSLQLQ 375 (467)
Q Consensus 346 ~~~~~~~G~~ill~syGsG~~~~~~~~~~~ 375 (467)
+ ++ +|++|++++||+|++|++++++|.
T Consensus 347 ~-~~--~Gd~vll~~~G~G~t~~~~ll~~~ 373 (374)
T 2h84_A 347 S-KS--LPTYSISLAFGPGLAFEGCFLKNV 373 (374)
T ss_dssp C-SC--CCSEEEEEEEETTTEEEEEEEEEC
T ss_pred h-cC--CCCeEEEEEeccchhhhhhhheec
Confidence 8 54 899999999999999999999985
|
| >1ub7_A 3-oxoacyl-[acyl-carrier protein] synthase; fatty acid synthesis, beta-ketoacyl-ACP synthase III, FABH; 2.30A {Thermus thermophilus} SCOP: c.95.1.2 c.95.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-38 Score=318.57 Aligned_cols=303 Identities=20% Similarity=0.189 Sum_probs=239.1
Q ss_pred eEEeEEEEecCCceeehhHHhhhhCCCcCeeE--EeccceEeeccCCCCCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEe
Q 012253 9 VGILALDIYFPPTCVLQEALEVHDGVSKGKYT--VGLGQDCMAFCSEVEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGS 86 (467)
Q Consensus 9 vgI~ai~~y~P~~~v~~~el~~~~g~~~~k~~--~Gig~r~~av~~~~Ed~~~ma~~Aa~~aL~~agi~~~~Id~Li~~T 86 (467)
++|.++++|+|+.+++++++++..+.+++|+. +||.+|+ ++.++++..+|+++|++++|+++|++|++||.|+++|
T Consensus 2 ~~I~~~g~~~P~~~~~~~~~~~~~~~~~~~i~~~~Gi~~r~--~~~~~~~~~~la~~a~~~al~~ag~~~~~id~vi~~~ 79 (322)
T 1ub7_A 2 SGILALGAYVPERVMTNADFEAYLDTSDEWIVTRTGIKERR--VAAEDEYTSDLAFKAVEDLLRRHPGALEGVDAVIVAT 79 (322)
T ss_dssp CEEEEEEEECCSEEEEHHHHHTTSSCCHHHHHHHTCCCEEE--ECCTTCCHHHHHHHHHHHHHHHSTTTTTTEEEEEEEC
T ss_pred cEEEEEEEECCCceecHHHHHHHhCCCHHHHHHhcCceEEe--ecCCCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEEc
Confidence 69999999999999999999998888888774 4666665 5577899999999999999999999999999999999
Q ss_pred ccCCCCCCcHHHHHHHHhcccCCCCeeEEeeCCcChHHHHHHHHHHHHHHhCCCCCCEEEEEEeecc-cccCCCC---CC
Q 012253 87 ETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDSA-VYAEGPA---RP 162 (467)
Q Consensus 87 es~~~~~ps~a~~v~~~Lgl~G~~~~~~~di~~aC~gg~~AL~~A~~~l~a~~~~~~~aLVV~sD~~-~y~~~~~---~~ 162 (467)
.++++..|+.+.+|+..||+ ++.++++.++|++++.||..|..+|++|.. ++|||+++|.. .+.++.+ ..
T Consensus 80 ~~~~~~~~~~a~~v~~~lgl----~~~~~~v~~aCas~~~al~~A~~~i~~g~~--~~vlv~g~e~~s~~~~~~d~~~~~ 153 (322)
T 1ub7_A 80 NTPDALFPDTAALVQARFGL----KAFAYDLLAGCPGWIYALAQAHALVEAGLA--QKVLAVGAEALSKIIDWNDRATAV 153 (322)
T ss_dssp SSCSEEESCHHHHHHHHTTC----CCEEEEEECSTTHHHHHHHHHHHHHHTTSC--SEEEEEEEECGGGTSCTTCHHHHT
T ss_pred CCCCCCCCcHHHHHHHHhCC----CCEEEeeCccchHHHHHHHHHHHHHHcCCC--CEEEEEEechhccccChhhcccce
Confidence 99987789999999999987 478999999999999999999999999965 99999999987 3223322 35
Q ss_pred ccccceeEEEecCCCC-ceeecccccccccCcccccc-------cCC--CCCCceecCcchHHHHHHHHHHHHHHHHHHH
Q 012253 163 TGGAAAVAMLIGPDAP-IAFESKLRGSHMSHAYDFYK-------PNL--ASEYPVVDGKLSQTCYLMALDSCYKYFCQKF 232 (467)
Q Consensus 163 t~GdGAvA~Ll~~~~~-~~~~~~~~~~~~~~~~df~~-------p~~--~~~~~~vdG~~s~~~y~~a~~~~~~~~~~~~ 232 (467)
.+||||+|+||++.+. ..+......++......+.. |.. ...+..++|+.+...+.+.+..+++..+++.
T Consensus 154 ~~GdGA~A~vL~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~al~~a 233 (322)
T 1ub7_A 154 LFGDGGGAAVVGKVREGYGFRSFVLGADGTGAKELYHACVAPRLPDGTSMKNRLYMNGREVFKFAVRVMNTATLEAIEKA 233 (322)
T ss_dssp TBCCEEEEEEEECCCTTCEEEEEEEEECGGGCTTEEEESSCSBCTTSCBCCSSCEECHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeccccEEEEEEecCCCCceeEEEEEEecCCCCeEEeCCCCCCCCccccccceEEecCHHHHHHHHHHHHHHHHHHHHHc
Confidence 7899999999998742 11110011111111111122 221 1234567888776666666666666665544
Q ss_pred HhhhcCCCCccccceeccCCchHHHHHHHHHhhhhhhhccccCchhhHHhhhcCCCCCCCcchhhhhhhHHHHHHHHHHH
Q 012253 233 EKLEGRQFSMLDVDYFVFHSPYNKLVQKSFARLFFNDFLRNASSVDEIAKEKLAPYSTLSDVESYQSRDLEKASQQVAKQ 312 (467)
Q Consensus 233 ~~~~~~~~~~~d~d~~i~H~p~~k~~~k~~~~l~~~~~~~~~~~~~~~~~~~l~~~~g~~~e~~~~~~~~~k~~~~~~~~ 312 (467)
+++++|||++++|+++.++.+.+.+.+ |++.++.+
T Consensus 234 ------gl~~~did~~~~H~~~~~~~d~~~~~l------------------------g~~~~~~~--------------- 268 (322)
T 1ub7_A 234 ------GLTPEDIRLFVPHQANLRIIDAARERL------------------------GLPWERVA--------------- 268 (322)
T ss_dssp ------TCCGGGCSEEEECCSCHHHHHHHHHTT------------------------TCCGGGBC---------------
T ss_pred ------CCCHHHCCEEEEcCCCHHHHHHHHHHc------------------------CCCHHHHH---------------
Confidence 699999999999999999998876655 56655431
Q ss_pred HhhhhcCCCcccccccCccccchHHHHHHHHHhhcCcCCCCCEEEEEEeccccceeeEEEEEe
Q 012253 313 LYDLKVQPSTLIPKQVGNMYTASLYAAFASLLHEKHSSLEGKRVIMFSYGSGLTATMFSLQLQ 375 (467)
Q Consensus 313 ~~~~~~~~s~~~~~~~GN~~taS~~l~L~~~l~~~~~~~~G~~ill~syGsG~~~~~~~~~~~ 375 (467)
+ ...++||+++||++++|..++++ +.+++|+++++.|||+|+++++++++|.
T Consensus 269 --------~--~~~~~Gh~~~As~~~~l~~~l~~-g~~~~g~~~l~~~~G~G~~~~~~vl~~~ 320 (322)
T 1ub7_A 269 --------V--NVDRYGNTSTASIPLALKEAVDA-GRIREGDHVLLVSFGAGLTWAAAVLTWG 320 (322)
T ss_dssp --------C--CHHHHCBCGGGHHHHHHHHHHHH-TSSCTTCEEEEEEEETTTEEEEEEEECC
T ss_pred --------H--HHHhhCcHHHHHHHHHHHHHHHh-CCCCCCCEEEEEEEChhheeEEEEEEeC
Confidence 1 12689999999999999999998 7889999999999999999999999984
|
| >3v7i_A Putative polyketide synthase; type III polyketide synthase, acyltransferase, transferase,; 2.90A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-39 Score=331.11 Aligned_cols=309 Identities=14% Similarity=0.084 Sum_probs=226.6
Q ss_pred CCceeEEeEEEEecCCceeehhHHhhhhC----CCc--Cee-----EEeccceEeeccCC--------------------
Q 012253 5 HPKNVGILALDIYFPPTCVLQEALEVHDG----VSK--GKY-----TVGLGQDCMAFCSE-------------------- 53 (467)
Q Consensus 5 ~~~~vgI~ai~~y~P~~~v~~~el~~~~g----~~~--~k~-----~~Gig~r~~av~~~-------------------- 53 (467)
.+|.+.|.+|+.++|++.++|+++.++.+ .++ .++ ..||.+|++.++.+
T Consensus 23 ~~m~~~i~~i~ta~P~~~~~q~~~~~~~~~~~~~~~~~~~~~~i~~~sgI~~R~~~l~~~~~~~~~~~~~~~~~~~~~~~ 102 (413)
T 3v7i_A 23 NAMAAYLCAPAVIHGEHSVETREIVEEVRGRHPHAPWAPRIDGIAASTGIESRGWMLPLEAAVAPGGGGDLGAAREALVR 102 (413)
T ss_dssp -CCCEEEECCEEEECSEEEEHHHHHHHHHHHCSSCSSGGGHHHHHHHHTCSEEEESSCHHHHHSCCCCCCCHHHHHHC--
T ss_pred CCCCeEEEeeEeeCCCcccCHHHHHHHHHHhcccchhHHHHHHHHHhCCcCeeeeecCHHHhcccccccccccccccccc
Confidence 35679999999999999999999887742 122 122 36898888765411
Q ss_pred -------------------------------CCCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEeccCCCCCCcHHHHHHH
Q 012253 54 -------------------------------VEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQ 102 (467)
Q Consensus 54 -------------------------------~Ed~~~ma~~Aa~~aL~~agi~~~~Id~Li~~Tes~~~~~ps~a~~v~~ 102 (467)
.+++.+|+++|+++||+++|+++++||.||++|+|+ +..|+++.+|++
T Consensus 103 ~~~~n~~l~~~~~~~e~i~~rtgi~~R~~~~~~~~~~La~~Aa~~AL~~agi~~~dId~li~~t~t~-~~~P~~a~~v~~ 181 (413)
T 3v7i_A 103 DGFTEQDANRAIAALKAVPASQTVQERTAPAWEAVQAYGERAARGALQIAGLDVADVDCLITSNSTT-PALPGLDVALAN 181 (413)
T ss_dssp ----CHHHHHHHHHHHTSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCGGGCCEEEEECCSS-CCSSCHHHHHHH
T ss_pred cccchhhhhhhcCcccceecCCCHHHhCcccccCHHHHHHHHHHHHHHHhCcCHHHCCEEEEEccCC-CCcCHHHHHHHH
Confidence 135778999999999999999999999999999998 468999999999
Q ss_pred HhcccCCCCeeEEee-CCcChHHHHHHHHHHHHHHhCCCCCCEEEEEEeecc-cccCCCC--------CCccccceeEEE
Q 012253 103 IFEKYGNTDIEGVDS-TNACYGGTAALFNCVNWVESASWDGRYGLVVCTDSA-VYAEGPA--------RPTGGAAAVAML 172 (467)
Q Consensus 103 ~Lgl~G~~~~~~~di-~~aC~gg~~AL~~A~~~l~a~~~~~~~aLVV~sD~~-~y~~~~~--------~~t~GdGAvA~L 172 (467)
+||+ ++++.++++ .++|+||++||.+|.++|++|. .++||||++|.+ ..-++.+ ..+|||||+|+|
T Consensus 182 ~LGl--~~~~~~~~v~~~~Cagg~~AL~~A~~~i~ag~--~~~vLvvg~E~~S~~~~~~d~~~~~lv~~~LFGDGAaAvv 257 (413)
T 3v7i_A 182 RLPL--RGDTMLLPATQWACVAGTRSLALAADLVAADP--DRVVLVVISEALSTTYQPADDTLESLIVRLLFADTAVAAV 257 (413)
T ss_dssp HTTC--CTTCEEEEESSCGGGHHHHHHHHHHHHHHHCT--TCEEEEEEEECGGGGCCSSCCSTTHHHHHHHBCCEEEEEE
T ss_pred HhCC--CCCceEEEeeCCccHHHHHHHHHHHHHHhcCC--CCEEEEEEEeccccccCccccchhhhhcceeeccccEEEE
Confidence 9998 567999999 8999999999999999999995 499999999998 3333333 346899999999
Q ss_pred ecCCCC--ceeecccccccccCcccc-----cccCCCCCCceecCcchHHHHHHHHHHHHHHHHHHHHhhhcCCCCcccc
Q 012253 173 IGPDAP--IAFESKLRGSHMSHAYDF-----YKPNLASEYPVVDGKLSQTCYLMALDSCYKYFCQKFEKLEGRQFSMLDV 245 (467)
Q Consensus 173 l~~~~~--~~~~~~~~~~~~~~~~df-----~~p~~~~~~~~vdG~~s~~~y~~a~~~~~~~~~~~~~~~~~~~~~~~d~ 245 (467)
|++++. ..+. +.++......+. |.......+..++|+ .. .+...+..+.+.++++......++++ |
T Consensus 258 l~~~~~~~~~~~--l~~~~~~~~p~~~~~~~~~~~~~g~~~~m~~~-v~-~~v~~~~~~i~~~L~~~~~~~~~gl~---i 330 (413)
T 3v7i_A 258 VTGRPRPESVLR--LDAAWHHTLPGTRDLHRLETRADGTHFVMDRR-GP-RAVQETVTAMWEWLRVRYEDDPSSWH---P 330 (413)
T ss_dssp EESSCCTTEEEE--EEEEEEEECTTCTTSEEEEEETTEEEEEECTT-HH-HHHHHHHHHHHHHHHHHTSSSCTTCC---C
T ss_pred EEecCCCCCCEE--EEccccEEeCCCccccCccccCCceEEEECcH-HH-HHHHHHHHHHHHHHhhccccccCCCc---e
Confidence 998762 1221 111111111110 110000012346665 22 22333444444443311000045665 9
Q ss_pred ceeccCCchHHHHHHHHHhhhhhhhccccCchhhHHhhhcCCCCC--CCcchhhhhhhHHHHHHHHHHHHhhhhcCCCcc
Q 012253 246 DYFVFHSPYNKLVQKSFARLFFNDFLRNASSVDEIAKEKLAPYST--LSDVESYQSRDLEKASQQVAKQLYDLKVQPSTL 323 (467)
Q Consensus 246 d~~i~H~p~~k~~~k~~~~l~~~~~~~~~~~~~~~~~~~l~~~~g--~~~e~~~~~~~~~k~~~~~~~~~~~~~~~~s~~ 323 (467)
|+|++||++.++++.+.++| | +++++.. +|+.
T Consensus 331 d~~v~Hq~~~~il~~v~~~L------------------------g~~l~~ek~~----------------------~s~~ 364 (413)
T 3v7i_A 331 DVLLAHPGGTRVLEYMEQTM------------------------PDEWPSGLLS----------------------YSRD 364 (413)
T ss_dssp CEEEEECSSHHHHHHHHHHS------------------------CSSCCSCSTH----------------------HHHH
T ss_pred eEEEECCCChHHHHHHHHHh------------------------CCCCCHHHhh----------------------ccce
Confidence 99999999999999999888 7 8887541 1122
Q ss_pred cccccCccccchHHHHHHHHHhhcCcCCCCCEEEEEEeccccceeeEEEEE
Q 012253 324 IPKQVGNMYTASLYAAFASLLHEKHSSLEGKRVIMFSYGSGLTATMFSLQL 374 (467)
Q Consensus 324 ~~~~~GN~~taS~~l~L~~~l~~~~~~~~G~~ill~syGsG~~~~~~~~~~ 374 (467)
..+ +|||+|||+|++|..++ + +++++|++|+|++||+|++|++.+++|
T Consensus 365 ~l~-~GNtssAsi~~~L~~~~-~-~~~~~Gd~vll~~fG~Glt~~~~ll~w 412 (413)
T 3v7i_A 365 SYT-SGNRGGAAVFDILRRAH-D-AGQKTGSRAVLYAAAPGLTATALEGEW 412 (413)
T ss_dssp HHT-TCBCGGGHHHHHHHHHH-H-HCCCTTCEEEEEEEETTTEEEEEEEEE
T ss_pred Eec-eeChHHHHHHHHHHHHH-h-CCCCCCCEEEEEEECHHHhHhhhheEe
Confidence 338 99999999999999999 4 568899999999999999999999998
|
| >3a5r_A Benzalacetone synthase; chalcone synthase, type III polyketide synthase, transferase, acyltransferase; HET: HC4; 1.60A {Rheum palmatum} PDB: 3a5q_A* 3a5s_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-39 Score=331.30 Aligned_cols=299 Identities=15% Similarity=0.217 Sum_probs=225.6
Q ss_pred eeEEeEEEEecCCceeehhHHhhhh-C-CC----------cCee--EEeccceEeeccCCC-------------------
Q 012253 8 NVGILALDIYFPPTCVLQEALEVHD-G-VS----------KGKY--TVGLGQDCMAFCSEV------------------- 54 (467)
Q Consensus 8 ~vgI~ai~~y~P~~~v~~~el~~~~-g-~~----------~~k~--~~Gig~r~~av~~~~------------------- 54 (467)
+++|.+++.|+|+++++|+|+++.. . .+ .+|+ ++||.+|+++ .++
T Consensus 12 ~~~I~gig~~~P~~~v~n~~l~~~~~~~~~~~~~~~~~~~~~~i~~~tGI~~R~~~--~~~~~~~~~p~~~~~~~~~~~~ 89 (387)
T 3a5r_A 12 LATVMAIGTANPPNCYYQADFPDFYFRVTNSDHLINLKQKFKRLCENSRIEKRYLH--VTEEILKENPNIAAYEATSLNV 89 (387)
T ss_dssp CEEEEEEEEECCSCEEETTTHHHHHHHHTTCTTCHHHHHHHHHHHHTTTCCEEECS--CCHHHHHHCHHHHSSSSSCHHH
T ss_pred CcEEEEeeecCCCcccCHHHHHHHHHHhcccccchhhHHHHHHHHHhCCCCceEEe--cChhhhccCcccccccCCCHHH
Confidence 4899999999999999999999875 2 21 1244 4788888754 333
Q ss_pred ------CCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHhcccCCCCee-EEeeCCcChHHHHH
Q 012253 55 ------EDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIE-GVDSTNACYGGTAA 127 (467)
Q Consensus 55 ------Ed~~~ma~~Aa~~aL~~agi~~~~Id~Li~~Tes~~~~~ps~a~~v~~~Lgl~G~~~~~-~~di~~aC~gg~~A 127 (467)
++..+|+++|+++||+++|+++++||.||++|+++ +..|+++.+|++.||+ +..+. ++++.++|+|++.|
T Consensus 90 r~~~~~~~~~~La~~Aa~~aL~~ag~~~~~Id~li~~t~~~-~~~p~~a~~v~~~lGl--~~~~~~~~~v~~aC~s~~~a 166 (387)
T 3a5r_A 90 RHKMQVKGVAELGKEAALKAIKEWGQPKSKITHLIVCCLAG-VDMPGADYQLTKLLDL--DPSVKRFMFYHLGCYAGGTV 166 (387)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCSCGGGCCEEEEEESSC-CEESCHHHHHHHHTTC--CTTCEEEEEESCCTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEEecCC-CCCCcHHHHHHHHcCc--CCCcceeeeEccccHHHHHH
Confidence 58899999999999999999999999999999997 5689999999999998 45564 99999999999999
Q ss_pred HHHHHHHHHhCCCCCCEEEEEEeecc-c-ccCCC-----C---CCccccceeEEEecCCCCce-----eecccccccccC
Q 012253 128 LFNCVNWVESASWDGRYGLVVCTDSA-V-YAEGP-----A---RPTGGAAAVAMLIGPDAPIA-----FESKLRGSHMSH 192 (467)
Q Consensus 128 L~~A~~~l~a~~~~~~~aLVV~sD~~-~-y~~~~-----~---~~t~GdGAvA~Ll~~~~~~~-----~~~~~~~~~~~~ 192 (467)
|.+|.++|++|.. ++||||++|.+ . +.++. . ..+|||||+|+||++.+... +.....+.
T Consensus 167 l~~A~~~i~~g~~--~~vLvvg~e~~s~~~~~~~d~~~~~~~~~~lfGDGA~A~vl~~~~~~~~~~~~~~l~~~~~---- 240 (387)
T 3a5r_A 167 LRLAKDIAENNKG--ARVLIVCSEMTTTCFRGPSETHLDSMIGQAILGDGAAAVIVGADPDLTVERPIFELVSTAQ---- 240 (387)
T ss_dssp HHHHHHHHHHSTT--CEEEEEEEECCTTTCCCCCSSCCSSTTHHHHBCCEEEEEEEESSCCTTTCCCCEEEEEEEE----
T ss_pred HHHHHHHHHhCCC--CEEEEEEEeccchhhcCCCccchhhccccceeccceeEEEEecCCCccccCCceEEEeeeE----
Confidence 9999999999965 99999999987 2 32321 1 24789999999999865311 11100111
Q ss_pred cccccccCCCCC----------CceecCcchHHHHHHHHHHHHHHHHHHHHhhhcCCCC-ccccceeccCCchHHHHHHH
Q 012253 193 AYDFYKPNLASE----------YPVVDGKLSQTCYLMALDSCYKYFCQKFEKLEGRQFS-MLDVDYFVFHSPYNKLVQKS 261 (467)
Q Consensus 193 ~~df~~p~~~~~----------~~~vdG~~s~~~y~~a~~~~~~~~~~~~~~~~~~~~~-~~d~d~~i~H~p~~k~~~k~ 261 (467)
...|..... +..+ ++.......+.+..+++.++ +++++. ++|+ +|++||++.++++.+
T Consensus 241 ---~~~p~~~~~~~~~~~~~g~~~~~-~~~v~~~~~~~~~~~i~~~L------~~~gl~d~~di-~~v~Hq~~~~i~~~~ 309 (387)
T 3a5r_A 241 ---TIVPESHGAIEGHLLESGLSFHL-YKTVPTLISNNIKTCLSDAF------TPLNISDWNSL-FWIAHPGGPAILDQV 309 (387)
T ss_dssp ---EECTTCTTSEEEEEETTEEEEEE-CTTHHHHHHHHHHHHHHHHH------GGGTCCCGGGS-EEEECCSCHHHHHHH
T ss_pred ---EEeCCChHhcCceEcCCCeEEEe-cchHHHHHHHHHHHHHHHHH------HhcCCCChhhe-eEEECCCCHHHHHHH
Confidence 111221100 1122 44443333444444444443 445677 8888 899999999999999
Q ss_pred HHhhhhhhhccccCchhhHHhhhcCCCCCCCcchhhhhhhHHHHHHHHHHHHhhhhcCCCcccccccCccccchHHHHHH
Q 012253 262 FARLFFNDFLRNASSVDEIAKEKLAPYSTLSDVESYQSRDLEKASQQVAKQLYDLKVQPSTLIPKQVGNMYTASLYAAFA 341 (467)
Q Consensus 262 ~~~l~~~~~~~~~~~~~~~~~~~l~~~~g~~~e~~~~~~~~~k~~~~~~~~~~~~~~~~s~~~~~~~GN~~taS~~l~L~ 341 (467)
.++| ++++++.+.. +.+.+++|||++||+|++|.
T Consensus 310 ~~~l------------------------gl~~ek~~~s----------------------~~~l~~~GNtssAsi~~~L~ 343 (387)
T 3a5r_A 310 TAKV------------------------GLEKEKLKVT----------------------RQVLKDYGNMSSATVFFIMD 343 (387)
T ss_dssp HHHH------------------------TCCGGGGHHH----------------------HHHHHHHCBCGGGHHHHHHH
T ss_pred HHHc------------------------CCChHHhHHH----------------------HHHHHhcCCcchhHHHHHHH
Confidence 8887 7888764311 01127999999999999999
Q ss_pred HHHhhcCcCCCC--------CEEEEEEeccccceeeEEEEEec
Q 012253 342 SLLHEKHSSLEG--------KRVIMFSYGSGLTATMFSLQLQE 376 (467)
Q Consensus 342 ~~l~~~~~~~~G--------~~ill~syGsG~~~~~~~~~~~~ 376 (467)
.++++ +. ++| ++|+|++||+|++|++++++|.+
T Consensus 344 ~~~~~-g~-~~G~~~~G~~~d~vll~~fG~G~t~~~~ll~~~~ 384 (387)
T 3a5r_A 344 EMRKK-SL-ENGQATTGEGLEWGVLFGFGPGITVETVVLRSVP 384 (387)
T ss_dssp HHHHH-HH-HTTCSBTTTTCSEEEEEEEETTTEEEEEEEEECB
T ss_pred HHHHh-cc-ccCCCCCCCCcceEEEEEecCcceeeehhheecc
Confidence 99988 55 566 99999999999999999999987
|
| >1xes_A Dihydropinosylvin synthase; native structure, transferase; HET: 3IO; 1.70A {Pinus sylvestris} PDB: 1xet_A* 1u0u_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-38 Score=329.92 Aligned_cols=305 Identities=16% Similarity=0.192 Sum_probs=226.3
Q ss_pred CceeEEeEEEEecCCceeehhHHhhhhCC---C---------cCee--EEeccceEeeccC---------------CC--
Q 012253 6 PKNVGILALDIYFPPTCVLQEALEVHDGV---S---------KGKY--TVGLGQDCMAFCS---------------EV-- 54 (467)
Q Consensus 6 ~~~vgI~ai~~y~P~~~v~~~el~~~~g~---~---------~~k~--~~Gig~r~~av~~---------------~~-- 54 (467)
++.++|.+++.|+|+++++|+|+++..+. + .+|+ ++||.+|+++.++ +.
T Consensus 36 ~~~~~I~gig~~lP~~~v~n~el~~~~~~~~~~~~~~~~~~~~~~i~~~tGI~~R~~a~~~~~~~~~p~~~~~~~~~~~~ 115 (413)
T 1xes_A 36 DGFASILAIGTANPPNAVDQSTYPDFYFRITGNEHNTELKDKFKRICERSAIKQRYMYLTEEILKKNPDVCAFVEVPSLD 115 (413)
T ss_dssp CSCEEEEEEEEECCSCEEEGGGHHHHHHHHTTCTTCHHHHHHHHHHHHTSCCCEEECSCCHHHHHTCHHHHSSSSSCCHH
T ss_pred CCCeEEEEEeecCCCCccCHHHHHHHHHHhccccchhhhHHHHHHHHhhcCcCceEEeeChhhhccCccccccccCCCHH
Confidence 45799999999999999999999987521 1 1234 4799988864322 00
Q ss_pred -------CCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHhcccCCCCe-eEEeeCCcChHHHH
Q 012253 55 -------EDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDI-EGVDSTNACYGGTA 126 (467)
Q Consensus 55 -------Ed~~~ma~~Aa~~aL~~agi~~~~Id~Li~~Tes~~~~~ps~a~~v~~~Lgl~G~~~~-~~~di~~aC~gg~~ 126 (467)
++..+|+++|+++||+++|+++++||.||++|+++ +..|+++.+|+..||+ +..+ +++++.++|+|++.
T Consensus 116 ~r~~~~~~~~~~La~~Aa~~AL~~agl~~~~Id~li~~t~~~-~~~p~~a~~v~~~lGl--~~~~~~~~~v~~aCas~~~ 192 (413)
T 1xes_A 116 ARQAMLAMEVPRLAKEAAEKAIQEWGQSKSGITHLIFCSTTT-PDLPGADFEVAKLLGL--HPSVKRVGVFQHGCFAGGT 192 (413)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCSCGGGCCEEEEEESCC-CEESCHHHHHHHHHTC--CTTCEEEEEESCCTTHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHcCCCHHHCCEEEEEEeCC-CccchHHHHHHHHcCc--CCccchhceecCccHHHHH
Confidence 47899999999999999999999999999999998 5689999999999998 4556 49999999999999
Q ss_pred HHHHHHHHHHhCCCCCCEEEEEEeecc-c-ccCCCC--------CCccccceeEEEecCCCCceeec---ccccccccCc
Q 012253 127 ALFNCVNWVESASWDGRYGLVVCTDSA-V-YAEGPA--------RPTGGAAAVAMLIGPDAPIAFES---KLRGSHMSHA 193 (467)
Q Consensus 127 AL~~A~~~l~a~~~~~~~aLVV~sD~~-~-y~~~~~--------~~t~GdGAvA~Ll~~~~~~~~~~---~~~~~~~~~~ 193 (467)
||.+|.++|++|.. ++||||++|.+ . +.++.. ..+|||||+|+||++.+...+.. .+.+...
T Consensus 193 AL~~A~~~i~~G~~--~~vLvvg~E~~s~~~~~~~d~~~~~~~~~~lfGDGA~A~vl~~~~~~~~~~~~~~l~~~~~--- 267 (413)
T 1xes_A 193 VLRMAKDLAENNRG--ARVLVICSETTAVTFRGPSETHLDSLVGQALFGDGASALIVGADPIPQVEKACFEIVWTAQ--- 267 (413)
T ss_dssp HHHHHHHHHHTSTT--CCEEEEEEECTTTTCCCCCTTCHHHHHHHHHBCCEEEEEEEESSCCTTTSCCSEEEEEEEE---
T ss_pred HHHHHHHHHHcCCC--CEEEEEEehhhhhhhcCCCccchhhcccceeEecccEEEEEecCCCccccCCceEEEeeee---
Confidence 99999999999955 99999999987 2 433221 24789999999998865311000 0111100
Q ss_pred ccccccCCCC---------C-CceecCcchHHHHHHHHHHHHHHHHHHHHhhhcCCCC-ccccceeccCCchHHHHHHHH
Q 012253 194 YDFYKPNLAS---------E-YPVVDGKLSQTCYLMALDSCYKYFCQKFEKLEGRQFS-MLDVDYFVFHSPYNKLVQKSF 262 (467)
Q Consensus 194 ~df~~p~~~~---------~-~~~vdG~~s~~~y~~a~~~~~~~~~~~~~~~~~~~~~-~~d~d~~i~H~p~~k~~~k~~ 262 (467)
...|.... . +..+ ++.......+.+..+++.++ ++++++ ++|+ +|++||++.++++.+.
T Consensus 268 --~~~p~~~~~~~~~~~~~g~~~~~-~~~v~~~~~~~~~~~i~~~L------~~~gl~d~~di-~~v~Hq~~~~i~~~~~ 337 (413)
T 1xes_A 268 --TVVPNSEGAIGGKVREVGLTFQL-KGAVPDLISANIENCMVEAF------SQFKISDWNKL-FWVVHPGGRAILDRVE 337 (413)
T ss_dssp --EECTTCTTTEEEEEETTEEEEEE-CTTHHHHHHHHHHHHHHHHH------GGGTCCCGGGS-EEEECCSCHHHHHHHH
T ss_pred --EEcCCChhhcCcEEecCceEEEe-cccHHHHHHHHHHHHHHHHH------HhcCCCCccce-eEEECCCCHHHHHHHH
Confidence 11121110 0 1122 44443333444444444333 445677 7888 7999999999999998
Q ss_pred HhhhhhhhccccCchhhHHhhhcCCCCCCCcchhhhhhhHHHHHHHHHHHHhhhhcCCCcccccccCccccchHHHHHHH
Q 012253 263 ARLFFNDFLRNASSVDEIAKEKLAPYSTLSDVESYQSRDLEKASQQVAKQLYDLKVQPSTLIPKQVGNMYTASLYAAFAS 342 (467)
Q Consensus 263 ~~l~~~~~~~~~~~~~~~~~~~l~~~~g~~~e~~~~~~~~~k~~~~~~~~~~~~~~~~s~~~~~~~GN~~taS~~l~L~~ 342 (467)
++| |+++++.+.++ ...+++|||++||+|++|..
T Consensus 338 ~~L------------------------gl~~ek~~~s~----------------------~~l~~~GNtssAsi~~~L~~ 371 (413)
T 1xes_A 338 AKL------------------------NLDPTKLIPTR----------------------HVMSEYGNMSSACVHFILDQ 371 (413)
T ss_dssp HHT------------------------TCCTTTTHHHH----------------------HHHHHHCBCGGGHHHHHHHH
T ss_pred HHc------------------------CCChHHhHHHH----------------------HHHHhcCcCchhhHHHHHHH
Confidence 887 78887653110 11279999999999999999
Q ss_pred HHhhcCcCCCC--------CEEEEEEeccccceeeEEEEEec
Q 012253 343 LLHEKHSSLEG--------KRVIMFSYGSGLTATMFSLQLQE 376 (467)
Q Consensus 343 ~l~~~~~~~~G--------~~ill~syGsG~~~~~~~~~~~~ 376 (467)
++++ +. ++| ++|+|++||+|++|++++++|.|
T Consensus 372 ~~~~-g~-~~G~~~~G~~~d~vll~~fG~G~t~~~~ll~~~~ 411 (413)
T 1xes_A 372 TRKA-SL-QNGCSTTGEGLEMGVLFGFGPGLTIETVVLKSVP 411 (413)
T ss_dssp HHHH-HH-HTTCSBTTTTCSEEEEEEEETTTEEEEEEEEECB
T ss_pred HHHh-cc-ccCCCCCCCCcceEEEEEecCCcEEeEEEEEecc
Confidence 9988 54 566 99999999999999999999986
|
| >3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-37 Score=349.14 Aligned_cols=309 Identities=17% Similarity=0.177 Sum_probs=227.2
Q ss_pred ceeEEeEEEEecCCceeehhHHhhh---hCCCcCe---------e--EEeccceEeeccCCCC-----------------
Q 012253 7 KNVGILALDIYFPPTCVLQEALEVH---DGVSKGK---------Y--TVGLGQDCMAFCSEVE----------------- 55 (467)
Q Consensus 7 ~~vgI~ai~~y~P~~~v~~~el~~~---~g~~~~k---------~--~~Gig~r~~av~~~~E----------------- 55 (467)
++++|.++|+|+|+.+++|+|+++. .+.++.| + ++||.+|++. .+++
T Consensus 602 ~~~~I~g~g~~~P~~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~sGI~~r~~~--~~~~~~~~~~~~~~~~~~~~~ 679 (979)
T 3tsy_A 602 GPATILAIGTATPDHCVYQSDYADYYFKVTKSEHMTALKKKFNRICDKSMIKKRYIH--LTEEMLEEHPNIGAYMAPSLN 679 (979)
T ss_dssp SCEEEEEEEEECCSCEEEHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCCCEEECS--CCHHHHHHCHHHHSSSSCCHH
T ss_pred CCceeecccCCCCCCccCHHHHHHHHHHhccccchHHHHHHHHHHHHhcCcceeeEe--cChhhhhcCcccccccCCCHH
Confidence 5799999999999999999999998 6777665 4 3688888753 4444
Q ss_pred --------CHHHHHHHHHHHHHHHcCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHhcccCCCCeeEEeeCCcChHHHHH
Q 012253 56 --------DVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAA 127 (467)
Q Consensus 56 --------d~~~ma~~Aa~~aL~~agi~~~~Id~Li~~Tes~~~~~ps~a~~v~~~Lgl~G~~~~~~~di~~aC~gg~~A 127 (467)
+..+||++|+++||+++|+++++||.||++|.+ ++..|+++++|+++||+. +..+.++|+++||+|++.|
T Consensus 680 ~r~~~~~~~~~~la~~Aa~~AL~~agl~~~dId~ii~~t~~-~~~~p~~a~~v~~~lGl~-~~~~~~~~v~~aCsg~~~A 757 (979)
T 3tsy_A 680 IRQEIITAEVPKLGKEAALKALKEWGQPKSKITHLVFCTTS-GVEMPGADYKLANLLGLE-PSVRRVMLYHQGCYAGGTV 757 (979)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCSCGGGCCEEEEEESS-CCCSSCHHHHHHHHHTCC-TTCEEEEEESCCTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHCCEEEEEeeC-CCCCCcHHHHHHHHcCCC-cccEEEeeeccccHhHHHH
Confidence 478899999999999999999999999999955 467899999999999982 1336899999999999999
Q ss_pred HHHHHHHHHhCCCCCCEEEEEEeeccccc--CCCC--------CCccccceeEEEecCCCCceeecccccccccCccccc
Q 012253 128 LFNCVNWVESASWDGRYGLVVCTDSAVYA--EGPA--------RPTGGAAAVAMLIGPDAPIAFESKLRGSHMSHAYDFY 197 (467)
Q Consensus 128 L~~A~~~l~a~~~~~~~aLVV~sD~~~y~--~~~~--------~~t~GdGAvA~Ll~~~~~~~~~~~~~~~~~~~~~df~ 197 (467)
|.+|.++|++|.. ++||||++|.+... .... ...|||||+|+||++.+...+..............+.
T Consensus 758 l~~A~~~i~sG~~--~~vLvvg~e~~~~~~~~~~~~~~~~~~~~~lfGDGA~A~vL~~~~~~~~~~~~~~~~~~~~~~~~ 835 (979)
T 3tsy_A 758 LRTAKDLAENNAG--ARVLVVCSEITVVTFRGPSEDALDSLVGQALFGDGSAAVIVGSDPDISIERPLFQLVSAAQTFIP 835 (979)
T ss_dssp HHHHHHHHHTSTT--CEEEEEEEECTTTTCCCCCSSCHHHHHHHHHBCCEEEEEEEESSCCSSSCCCCEEEEEEEEEECT
T ss_pred HHHHHHHHHhCCC--CEEEEEEEEecchheeCCCccCHHHHhhhhhccCceEEEEEecCCCccccCcceEEEeeeeEEec
Confidence 9999999999965 99999999997332 2211 1368999999999986531110000000000000011
Q ss_pred ccCC-------CCCCceecCcchHHHHHHHHHHHHHHHHHHHHhhhcCCCCccccceeccCCchHHHHHHHHHhhhhhhh
Q 012253 198 KPNL-------ASEYPVVDGKLSQTCYLMALDSCYKYFCQKFEKLEGRQFSMLDVDYFVFHSPYNKLVQKSFARLFFNDF 270 (467)
Q Consensus 198 ~p~~-------~~~~~~vdG~~s~~~y~~a~~~~~~~~~~~~~~~~~~~~~~~d~d~~i~H~p~~k~~~k~~~~l~~~~~ 270 (467)
.+.. ...+..+.++.. +..+...+.+.+.+.+ +++|++++|||+|++||++.++++++.++|
T Consensus 836 ~~~~~~~~~~~~~~~~~~~~~~v---~~~~~~~~~~~~~~al---~~agl~~~did~~~~Hq~~~~i~~~~~~~l----- 904 (979)
T 3tsy_A 836 NSAGAIAGNLREVGLTFHLWPNV---PTLISENVEKCLTQAF---DPLGISDWNSLFWIAHPGGPAILDAVEAKL----- 904 (979)
T ss_dssp TCTTSEEEEEETTEEEEEECTTH---HHHHHHHHHHHHHHHH---GGGTCCCGGGSEEEECCSCHHHHHHHHHHH-----
T ss_pred CchhheEEEEecCceEEEEchHH---HHHHHHHHHHHHHHHH---hhcCCCCcccceEEECCCChHHHHHHHHHc-----
Confidence 1110 111222344444 3333333333333333 566899999999999999999999999988
Q ss_pred ccccCchhhHHhhhcCCCCCCCcchhhhhhhHHHHHHHHHHHHhhhhcCCCcccccccCccccchHHHHHHHHHhhcCcC
Q 012253 271 LRNASSVDEIAKEKLAPYSTLSDVESYQSRDLEKASQQVAKQLYDLKVQPSTLIPKQVGNMYTASLYAAFASLLHEKHSS 350 (467)
Q Consensus 271 ~~~~~~~~~~~~~~l~~~~g~~~e~~~~~~~~~k~~~~~~~~~~~~~~~~s~~~~~~~GN~~taS~~l~L~~~l~~~~~~ 350 (467)
|+++++.+ .+ +...+++|||+|||+|++|++++++ +
T Consensus 905 -------------------gl~~~k~~---------~~-------------~~~l~~~GNtssasi~~~L~~~~~~---~ 940 (979)
T 3tsy_A 905 -------------------NLDKKKLE---------AT-------------RHVLSEYGNMSSACVLFILDEMRKK---S 940 (979)
T ss_dssp -------------------TCCTTTTH---------HH-------------HHHHHHHCBCTTHHHHHHHHHHHHH---H
T ss_pred -------------------CCChHHHH---------HH-------------HHHHHHcCCcchhhHHHHHHHHHhh---h
Confidence 78887643 11 1112799999999999999998875 3
Q ss_pred CCCCEE---------EEEEeccccceeeEEEEEec
Q 012253 351 LEGKRV---------IMFSYGSGLTATMFSLQLQE 376 (467)
Q Consensus 351 ~~G~~i---------ll~syGsG~~~~~~~~~~~~ 376 (467)
++|++| +|++||+|++|++++++|.+
T Consensus 941 ~~G~~v~~g~~~~~~ll~~~G~G~t~~~~~l~~~~ 975 (979)
T 3tsy_A 941 LKGERATTGEGLDWGVLFGFGPGLTIETVVLHSIP 975 (979)
T ss_dssp HHTTCSBTTTTCSEEEEEEECGGGEEEEEEEECCB
T ss_pred cccccccCCCCcceeEEEEeCCchHHHHHHHHhcc
Confidence 456555 99999999999999999986
|
| >3lma_A Stage V sporulation protein AD (spovad); NESG, structural genomics, PSI-2, protein structure initiative; 1.99A {Bacillus licheniformis} PDB: 3lm6_A | Back alignment and structure |
|---|
Probab=99.90 E-value=2.6e-22 Score=199.24 Aligned_cols=280 Identities=11% Similarity=0.040 Sum_probs=183.4
Q ss_pred eeEEeEEEEecCCceeehhHHhhhhCCCcCeeE--EeccceEeeccCCCCCHHHHHHHHHHHHHHHcCCCcCCcCEEEEE
Q 012253 8 NVGILALDIYFPPTCVLQEALEVHDGVSKGKYT--VGLGQDCMAFCSEVEDVISMSLTVVTSLLEKYKIDPTQIGRLEVG 85 (467)
Q Consensus 8 ~vgI~ai~~y~P~~~v~~~el~~~~g~~~~k~~--~Gig~r~~av~~~~Ed~~~ma~~Aa~~aL~~agi~~~~Id~Li~~ 85 (467)
.+.|.+.+..++ ..|.+.-.+..-+++. ..+|++. .++...+|+++|+++||+++|++|+|||+||++
T Consensus 14 ~~~i~~~~~~~g-----~~E~~gpl~~~fd~~~~d~~fG~~t-----~e~a~sdLa~~Aa~~AL~~AGi~~~DID~II~g 83 (347)
T 3lma_A 14 PLFVNSSGTAVG-----PKEKEGPLGHLFDKSYDEMHCNQKN-----WEMAERKLMEDAVQSALSKQNLKKEDIDIFLAG 83 (347)
T ss_dssp CCEEEEEEEEEC-----HHHHHSTTGGGSSEECSSTTTTSSS-----HHHHHHHHHHHHHHHHHHTTTCCGGGCSEEEEE
T ss_pred CCEEEEEeeeeC-----chhhcCCchhhchhhhcccccCCcC-----ccHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEE
Confidence 478888887665 5555544444444442 3445442 256788999999999999999999999999999
Q ss_pred eccCCCCCCcHHHHHHHHhcccCCCCeeEEeeCCcChHHHHHHHHHHHHHHhCCCCCCEEEEEEeeccc-------ccCC
Q 012253 86 SETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDSAV-------YAEG 158 (467)
Q Consensus 86 Tes~~~~~ps~a~~v~~~Lgl~G~~~~~~~di~~aC~gg~~AL~~A~~~l~a~~~~~~~aLVV~sD~~~-------y~~~ 158 (467)
|.++ +. ..+++|++.|++ .+||+.++|+|++.||.+|..+|++|.+ ++||||++|... |...
T Consensus 84 t~t~-q~--~~A~~va~~Lgi------pafdV~~ACsg~~~AL~~Aa~~I~sG~~--~~VLVVGaE~~S~aerq~r~p~e 152 (347)
T 3lma_A 84 DLLN-QN--VTANYVARHLKI------PFLCLFGACSTSMESIAISSALIDGGFA--KRALAATSSHNATAERQFRYPTE 152 (347)
T ss_dssp ESSS-SS--TTHHHHHHHHCC------CEEEBCCSTTHHHHHHHHHHHHHHTTSC--SEEEEEEEECGGGTTCCC-----
T ss_pred eCCC-ch--hHHHHHHHHhCC------CEEEecChhHHHHHHHHHHHHHHhcCCC--CEEEEEEeccccchhhhccCcch
Confidence 9998 32 378999999864 3999999999999999999999999966 999999999872 2211
Q ss_pred --C----CCCccccceeEEEecCCCC-ceeecccccccccCcccccccCCCCCCceecCcchHHHHHHHH-HHHHHHHHH
Q 012253 159 --P----ARPTGGAAAVAMLIGPDAP-IAFESKLRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMAL-DSCYKYFCQ 230 (467)
Q Consensus 159 --~----~~~t~GdGAvA~Ll~~~~~-~~~~~~~~~~~~~~~~df~~p~~~~~~~~vdG~~s~~~y~~a~-~~~~~~~~~ 230 (467)
. ....++|||+|+||++.+. ..+ .+...-.+.|+-..+ |...| .++ ..+++.+.+
T Consensus 153 ~g~q~p~ta~~t~dGAGA~VL~~~g~~p~I----~~~t~Gkvvd~g~~d-----~~nmg--------~amaPaA~~ti~~ 215 (347)
T 3lma_A 153 YGGQKPGTATSTVTGSGAVVLSQQPGGIKI----TSATVGRVIDLGITD-----SQDMG--------SAMAPAAADTIKQ 215 (347)
T ss_dssp -----------CCCEEEEEEEESSCCSEEE----EEEECCCCBCCSCCC-----TTCHH--------HHHHHHHHHHHHH
T ss_pred hcccCCchhcEEccceeEEEEEecCCCCce----eeeeeeeeeccCCCC-----CCCcc--------ccchHHHHHHHHH
Confidence 0 1123489999999997653 122 111122233321111 11111 111 122222233
Q ss_pred HHHhhhcCCCCccccceec---cCCchHHHHHHHHHhhhhhhhccccCchhhHHhhhcCCCCCCCcchhhhhhhHHHHHH
Q 012253 231 KFEKLEGRQFSMLDVDYFV---FHSPYNKLVQKSFARLFFNDFLRNASSVDEIAKEKLAPYSTLSDVESYQSRDLEKASQ 307 (467)
Q Consensus 231 ~~~~~~~~~~~~~d~d~~i---~H~p~~k~~~k~~~~l~~~~~~~~~~~~~~~~~~~l~~~~g~~~e~~~~~~~~~k~~~ 307 (467)
.+ ++.+++++|+|+++ +||.+.+|++++++++ |++.++.|.|=-+.
T Consensus 216 ~l---~d~g~~~~d~D~ivtgdL~q~g~~il~~l~~~~------------------------g~~~~~~~~dcg~~---- 264 (347)
T 3lma_A 216 HL---EDLGRTPDDYDLILTGDLSGVGSPILKDLLKEE------------------------GINVGTKHNDCGLM---- 264 (347)
T ss_dssp HH---HHHTCCGGGCSEEEEESCHHHHHHHHHHHHHHT------------------------TCCCGGGEEEGGGT----
T ss_pred HH---HHhCCCHHHcCEEecCChHHHHHHHHHHHHHHc------------------------CCChhHCccccceE----
Confidence 22 44579999999999 8999999999999888 77777666542221
Q ss_pred HHHHHHhhhhcCCCcccccccCccccchHHHHHHHHHhhcCcCCCCCEEEEEEeccccce
Q 012253 308 QVAKQLYDLKVQPSTLIPKQVGNMYTASLYAAFASLLHEKHSSLEGKRVIMFSYGSGLTA 367 (467)
Q Consensus 308 ~~~~~~~~~~~~~s~~~~~~~GN~~taS~~l~L~~~l~~~~~~~~G~~ill~syGsG~~~ 367 (467)
.+..... -.-|-.|.++....|...|-..-+..+.+||++.+.|++++-
T Consensus 265 ---------iy~~~~~--~~~ggsg~~csa~v~~~~~~~~~~~g~~~ril~~~tGalls~ 313 (347)
T 3lma_A 265 ---------IYTPDQQ--VFAGGSGCACSAVVTFAHIFKEIEAGRLNRVLVVATGALLSP 313 (347)
T ss_dssp ---------SSCC-----------CCCCHHHHHHHTHHHHHHTTSCSEEEEEEEEECCCH
T ss_pred ---------EecCCCc--ccCCCCccccHHHHHHHHHHHHHhcCcccEEEEEecccccCc
Confidence 0000000 234778888999999886654212245689999999999874
|
| >4e1l_A Acetoacetyl-COA thiolase 2; 3-layer(ABA) sandwich, transferase; 2.00A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=99.71 E-value=3.8e-16 Score=160.36 Aligned_cols=97 Identities=7% Similarity=0.097 Sum_probs=90.6
Q ss_pred CCCCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHhcccCCCCeeEEeeCCcChHHHHHHHHHH
Q 012253 53 EVEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAALFNCV 132 (467)
Q Consensus 53 ~~Ed~~~ma~~Aa~~aL~~agi~~~~Id~Li~~Tes~~~~~ps~a~~v~~~Lgl~G~~~~~~~di~~aC~gg~~AL~~A~ 132 (467)
.+++..+|+++|++++|+++|++|++||.|++++.++....+.++..++..||+ +.++.++++..+|.+++.||..|.
T Consensus 25 ~~~~~~~L~~~a~~~Al~~agi~~~~Id~v~~g~~~~~~~~~~~a~~~~~~lGl--~~~~p~~~v~~~Css~~~al~~A~ 102 (395)
T 4e1l_A 25 KNTSAVQLGTIAVKEAISRVGLNLSEIDEVIIGNVLQTGLGQNVARQIAINAGI--PNSVPSYTVNKLCGSGLKSVQLAA 102 (395)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTCCGGGCCEEEEECCCCSSTTCCHHHHHHHHTTC--CTTSCEEEECCGGGHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEEeccCCCCcchHHHHHHHHcCC--CCCceEEEccccchHHHHHHHHHH
Confidence 478899999999999999999999999999999999887788999999999998 567899999999999999999999
Q ss_pred HHHHhCCCCCCEEEEEEeecc
Q 012253 133 NWVESASWDGRYGLVVCTDSA 153 (467)
Q Consensus 133 ~~l~a~~~~~~~aLVV~sD~~ 153 (467)
.+|++|.. +.|||+++|..
T Consensus 103 ~~I~~G~~--~~vlv~g~e~~ 121 (395)
T 4e1l_A 103 QSITSGEN--DVVIAGGTENM 121 (395)
T ss_dssp HHHHTTSC--SEEEEEEEEET
T ss_pred HHHhCCCC--CEEEEEEEecc
Confidence 99999966 99999999865
|
| >3ss6_A Acetyl-COA acetyltransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha beta; HET: CSO; 1.70A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=99.70 E-value=5e-16 Score=159.42 Aligned_cols=98 Identities=7% Similarity=0.111 Sum_probs=91.0
Q ss_pred CCCCCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHhcccCCCCeeEEeeCCcChHHHHHHHHH
Q 012253 52 SEVEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAALFNC 131 (467)
Q Consensus 52 ~~~Ed~~~ma~~Aa~~aL~~agi~~~~Id~Li~~Tes~~~~~ps~a~~v~~~Lgl~G~~~~~~~di~~aC~gg~~AL~~A 131 (467)
..+++..+|+++|++++|+++|+++++||.|++++.++....+.++..++..||+ +.++.++++..+|++++.||..|
T Consensus 24 ~~~~~~~~L~~~A~~~Al~~agl~~~~Id~v~~g~~~~~~~~~~~a~~i~~~lGl--~~~~p~~~v~~aCss~~~al~~A 101 (394)
T 3ss6_A 24 LKNVTPVELAVPVLQEAVKRGGVEPHEVDEVILGHCIQRTDEANTARTAALAAGF--PDTVTGYTIQRQCSSGMQAIMSA 101 (394)
T ss_dssp TTTCCHHHHHHHHHHHHHHHTTCCGGGCCEEEEECSSCCGGGCSHHHHHHHHTTC--CTTCEEEEEECGGGHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHcCCCHhHCCEEEEEEccCCCccchHHHHHHHHcCC--CCCceEEEecCcchHHHHHHHHH
Confidence 3578899999999999999999999999999999999887778899999999998 55799999999999999999999
Q ss_pred HHHHHhCCCCCCEEEEEEeecc
Q 012253 132 VNWVESASWDGRYGLVVCTDSA 153 (467)
Q Consensus 132 ~~~l~a~~~~~~~aLVV~sD~~ 153 (467)
..+|++|.+ +.|||+++|..
T Consensus 102 ~~~I~~G~~--~~vlv~G~e~~ 121 (394)
T 3ss6_A 102 AMQIQLGVS--EVVVAGGVEAM 121 (394)
T ss_dssp HHHHHHTSC--SEEEEEEEEEC
T ss_pred HHHHhCCCC--CEEEEEEEhhc
Confidence 999999976 99999999875
|
| >4dd5_A Acetyl-COA acetyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, thiolase; 1.25A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=99.69 E-value=7.5e-16 Score=158.23 Aligned_cols=98 Identities=10% Similarity=0.090 Sum_probs=91.8
Q ss_pred CCCCCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHhcccCCCCeeEEeeCCcChHHHHHHHHH
Q 012253 52 SEVEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAALFNC 131 (467)
Q Consensus 52 ~~~Ed~~~ma~~Aa~~aL~~agi~~~~Id~Li~~Tes~~~~~ps~a~~v~~~Lgl~G~~~~~~~di~~aC~gg~~AL~~A 131 (467)
.+++++.+|+++|++++|+++|+++++||.|++++.++....|.++..|+..||+ ++++.++++..+|++++.||..|
T Consensus 26 ~~~~~~~~L~~~A~~~AL~~agl~~~dId~vi~g~~~~~~~~~~~a~~v~~~lGl--~~~~p~~~v~~aCss~~~al~~A 103 (396)
T 4dd5_A 26 FKSVSAVELGVTAAKEAIKRANITPDMIDESLLGGVLTAGLGQNIARQIALGAGI--PVEKPAMTINIVCGSGLRSVSMA 103 (396)
T ss_dssp TTTSCHHHHHHHHHHHHHHHTTCCGGGCCEEEEECSCCTTSCSCHHHHHHHHTTC--CTTSCEEEECCGGGHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEEeecCCCCCchHHHHHHHHcCC--CCCceEEEeccccHHHHHHHHHH
Confidence 4578999999999999999999999999999999999988889999999999998 55799999999999999999999
Q ss_pred HHHHHhCCCCCCEEEEEEeecc
Q 012253 132 VNWVESASWDGRYGLVVCTDSA 153 (467)
Q Consensus 132 ~~~l~a~~~~~~~aLVV~sD~~ 153 (467)
..+|++|.. +.|||+++|..
T Consensus 104 ~~~I~~G~~--~~vLv~g~e~~ 123 (396)
T 4dd5_A 104 SQLIALGDA--DIMLVGGAENM 123 (396)
T ss_dssp HHHHHHTSC--SEEEEEEEEES
T ss_pred HHHHhcCCC--CEEEEEEEecc
Confidence 999999966 99999999875
|
| >3o04_A LMO2201 protein, beta-keto-acyl carrier protein synthase II; csgid, structural genomics; 1.85A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.67 E-value=2.4e-14 Score=147.82 Aligned_cols=223 Identities=13% Similarity=0.110 Sum_probs=142.6
Q ss_pred ceeEEeEEEEecCCceeehhHHhhhh--CCC---------cCeeEEecc-------ceEeecc----CCCCCHHHHHHHH
Q 012253 7 KNVGILALDIYFPPTCVLQEALEVHD--GVS---------KGKYTVGLG-------QDCMAFC----SEVEDVISMSLTV 64 (467)
Q Consensus 7 ~~vgI~ai~~y~P~~~v~~~el~~~~--g~~---------~~k~~~Gig-------~r~~av~----~~~Ed~~~ma~~A 64 (467)
+.|.|.++++++|.- .+.+++.+.. |.+ .+.+...++ .+.+ +. ..-.....|+++|
T Consensus 4 ~~v~ItG~g~~~P~g-~~~~~~w~~l~~g~~~i~~~~~~~~~~~~~~~~~~v~~fd~~~~-i~~~~~~~~d~~~~l~l~A 81 (413)
T 3o04_A 4 RRVVVTGIGAVTPIG-NDAETSWENAKKGVNGVAKMTRLNPDDFPVKIAAELKDFDVEKY-LEKKEARKMDRFTHYAIAS 81 (413)
T ss_dssp CCEEEEEEEEEBTTB-SSHHHHHHHHHTTCCCEEECCSSCGGGSSCCEEECCSSCCGGGT-SCHHHHTTSCHHHHHHHHH
T ss_pred CCEEEEEeEEECCCC-CCHHHHHHHHHcCCCceeeCCccccccCccccccccCCCChhhc-cCHHHHhhCCHHHHHHHHH
Confidence 469999999999987 5777766552 221 111100000 0000 00 0012356799999
Q ss_pred HHHHHHHcCCCcCCcC----EEEEEeccC-----------------CCCCCc---------HHHHHHHHhcccCCCCeeE
Q 012253 65 VTSLLEKYKIDPTQIG----RLEVGSETV-----------------IDKSKS---------IKTFLMQIFEKYGNTDIEG 114 (467)
Q Consensus 65 a~~aL~~agi~~~~Id----~Li~~Tes~-----------------~~~~ps---------~a~~v~~~Lgl~G~~~~~~ 114 (467)
+++||+++|+++++|| .|++||.++ ....|. .+..|+..||+.| .+
T Consensus 82 a~~AL~dAGl~~~~id~~~~gv~vgt~~g~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~ia~~lgl~g----p~ 157 (413)
T 3o04_A 82 AEMAVQDSGLVIDDSNANRVGVWIGSGIGGMETFETQYEIFLNRGHRRVSPFFVPMMIPDMGSGQVSIRFGAKG----IN 157 (413)
T ss_dssp HHHHHHHHTCCCCTTTGGGEEEEEECSSCCHHHHHHHHHHHHHHCTTTSCTTHHHHHSTTHHHHHHHHHHTCCS----CE
T ss_pred HHHHHHHcCCChhHcCccceEEEEccccCcHHHHHHHHHHHHhcCCCccCchhhhcccccHHHHHHHHHhCCCC----cc
Confidence 9999999999999999 999998752 222332 3889999999832 58
Q ss_pred EeeCCcChHHHHHHHHHHHHHHhCCCCCCEEEEEEeecc----------------c----------ccCCCCCCccccce
Q 012253 115 VDSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDSA----------------V----------YAEGPARPTGGAAA 168 (467)
Q Consensus 115 ~di~~aC~gg~~AL~~A~~~l~a~~~~~~~aLVV~sD~~----------------~----------y~~~~~~~t~GdGA 168 (467)
+++..+|++++.||..|..+|++|.+ +.|||+++|.. . |....+...+||||
T Consensus 158 ~~v~~aCss~~~Al~~A~~~I~~G~~--d~~lvgG~e~~~~~~~~~~~~~~~~ls~~~~p~~~~~pfd~~~~g~~~gdGA 235 (413)
T 3o04_A 158 STTVTACATATNSIGDAFKVIERGDA--DAMITGGAEAPITKMSLAGFTANKALSLNPDPETACRPFDKDRDGFIIGEGA 235 (413)
T ss_dssp ECCCCGGGHHHHHHHHHHHHHHTTSC--SEEEEEEEECCCSHHHHHHHHHTTCBCCCCCTTTSCCTTBTTCCSBCBBCEE
T ss_pred eeecchhHHHHHHHHHHHHHHHcCCC--CEEEEeEEcccCCHHHHHHHHhcccccCCCCCCCCcCCCcCCCCCceEeccE
Confidence 89999999999999999999999977 99999999972 0 00011224579999
Q ss_pred eEEEecCCC-------C-ceeeccccccccc-CcccccccCCCCCCceecCcchHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 012253 169 VAMLIGPDA-------P-IAFESKLRGSHMS-HAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKYFCQKFEKLEGRQ 239 (467)
Q Consensus 169 vA~Ll~~~~-------~-~~~~~~~~~~~~~-~~~df~~p~~~~~~~~vdG~~s~~~y~~a~~~~~~~~~~~~~~~~~~~ 239 (467)
+|+||++.+ + ... +.++... +......| ..++. ....+.+..++ +++
T Consensus 236 aavvL~~~~~A~~~g~~i~a~---i~g~~~~~dg~~~~~~-------~~~~~--------~~~~a~~~al~------~ag 291 (413)
T 3o04_A 236 GIVILEEYEHAKARGAKIYAE---IVGYGATGDAYHITAP-------APNGE--------GAARAMKMAID------DAG 291 (413)
T ss_dssp EEEEEEEHHHHHHHTCCCCEE---EEEEEEEECCSCSSSC-------CGGGH--------HHHHHHHHHHH------HHT
T ss_pred EEEEEeeHHHHHhCCCeEEEE---EEEEEEcCCCCCCCCC-------CCCHH--------HHHHHHHHHHH------HcC
Confidence 999998632 1 111 1122111 11111122 11221 12223333333 347
Q ss_pred CCccccceeccCCchHHHHHHH
Q 012253 240 FSMLDVDYFVFHSPYNKLVQKS 261 (467)
Q Consensus 240 ~~~~d~d~~i~H~p~~k~~~k~ 261 (467)
++++|||++.+|..++.+.+..
T Consensus 292 l~~~dId~ve~HgtgT~~~d~~ 313 (413)
T 3o04_A 292 LTPDKVDYINAHGTSTPYNDEY 313 (413)
T ss_dssp CCGGGCCEEECCCCCCHHHHHH
T ss_pred CCHHHcCEEEEeCCcCcccCHH
Confidence 9999999999999988866544
|
| >2iik_A 3-ketoacyl-COA thiolase, peroxisomal; fatty acid metabolism, structural genomics, structural genom consortium, SGC, transferase; 2.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.66 E-value=2e-15 Score=156.05 Aligned_cols=132 Identities=11% Similarity=0.060 Sum_probs=93.3
Q ss_pred ecCCceeehhHHhhhhCC---CcCee----EEeccceEeeccCCCCCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEeccC
Q 012253 17 YFPPTCVLQEALEVHDGV---SKGKY----TVGLGQDCMAFCSEVEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETV 89 (467)
Q Consensus 17 y~P~~~v~~~el~~~~g~---~~~k~----~~Gig~r~~av~~~~Ed~~~ma~~Aa~~aL~~agi~~~~Id~Li~~Tes~ 89 (467)
.-|+++++|++|++..+. +..++ ++.++.++. ....+++..+|+++|++++|+++|+++++||.|+++|.++
T Consensus 9 ~~P~~~~~n~~~~~~~~~~~~~~v~Ivg~~rt~~g~~~~-~~~~~~~~~~L~~~Aa~~AL~dAgl~~~~id~v~~g~~~~ 87 (418)
T 2iik_A 9 SGVDLGTENLYFQSMAPQASAADVVVVHGRRTAICRAGR-GGFKDTTPDELLSAVMTAVLKDVNLRPEQLGDICVGNVLQ 87 (418)
T ss_dssp ------------------CCTTCEEEEEEEECCCEETTT-STTTTCCHHHHHHHHHHHHHHHHTCCGGGCCCEEEECSSS
T ss_pred CCCCccccHHHHHHHhhhccCCCeEEEeeeecCceecCC-CCCCCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEEecCC
Confidence 359999999999987653 32222 233443211 1245789999999999999999999999999999999888
Q ss_pred CCCCCcHHHHHHHHhcccCCCCeeEEeeCCcChHHHHHHHHHHHHHHhCCCCCCEEEEEEeecc
Q 012253 90 IDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDSA 153 (467)
Q Consensus 90 ~~~~ps~a~~v~~~Lgl~G~~~~~~~di~~aC~gg~~AL~~A~~~l~a~~~~~~~aLVV~sD~~ 153 (467)
....+..+..++..||+ +.++.++++..+|++++.||..|..+|++|.+ +.|||+++|..
T Consensus 88 ~~~~~~~a~~~a~~lGl--~~~~p~~~v~~aCss~~~Al~~A~~~I~~G~~--d~vLv~G~e~~ 147 (418)
T 2iik_A 88 PGAGAIMARIAQFLSDI--PETVPLSTVNRQCSSGLQAVASIAGGIRNGSY--DIGMACGVESM 147 (418)
T ss_dssp BGGGHHHHHHHHHHTTC--CTTSCEEEEECGGGHHHHHHHHHHHHHHTTSC--SEEEEEEEEET
T ss_pred ccccccHHHHHHHHcCC--CCCceEEEeCCCCHHHHHHHHHHHHHHHCCCC--CEEEEeccccC
Confidence 66556778888899998 45788999999999999999999999999976 99999999864
|
| >1ox0_A Beta ketoacyl-acyl carrier protein synthase; transferase; 1.30A {Streptococcus pneumoniae} SCOP: c.95.1.1 c.95.1.1 PDB: 1oxh_A 2alm_A 2rjt_A | Back alignment and structure |
|---|
Probab=99.63 E-value=1.4e-13 Score=142.84 Aligned_cols=228 Identities=13% Similarity=0.062 Sum_probs=143.7
Q ss_pred CceeEEeEEEEecCCceeehhHHhhhh--CCCc----CeeE-EeccceEeecc---------CC-----CCCHHHHHHHH
Q 012253 6 PKNVGILALDIYFPPTCVLQEALEVHD--GVSK----GKYT-VGLGQDCMAFC---------SE-----VEDVISMSLTV 64 (467)
Q Consensus 6 ~~~vgI~ai~~y~P~~~v~~~el~~~~--g~~~----~k~~-~Gig~r~~av~---------~~-----~Ed~~~ma~~A 64 (467)
...|-|.++++.+|.- .+.+++.+.. |.+. .++. .++..+.-... ++ -.....|+++|
T Consensus 22 m~~v~ItG~g~~~P~g-~~~~~~w~~l~~g~~~i~~~~~~~~~~~~~~~~~~v~~fd~~~~~~~~~~~~~d~~~~l~l~a 100 (430)
T 1ox0_A 22 LNRVVVTGYGVTSPIG-NTPEEFWNSLATGKIGIGGITKFDHSDFDVHNAAEIQDFPFDKYFVKKDTNRFDNYSLYALYA 100 (430)
T ss_dssp CCCEEEEEEEEEBTTB-SSHHHHHHHHHHTCCCEEECCSSCCTTSSCCEEECCSSCCHHHHCCGGGGGTCCHHHHHHHHH
T ss_pred CCCEEEEEEEEECCCc-CCHHHHHHHHHcCCCeeeeCCcccccCCccceeeeccCCChhhcCCHHHHHhcCHHHHHHHHH
Confidence 3579999999999987 5777765542 3211 0110 01111111100 01 11246899999
Q ss_pred HHHHHHHcCCCcCCcC----EEEEEeccCCC---------------------CCC-----cHHHHHHHHhcccCCCCeeE
Q 012253 65 VTSLLEKYKIDPTQIG----RLEVGSETVID---------------------KSK-----SIKTFLMQIFEKYGNTDIEG 114 (467)
Q Consensus 65 a~~aL~~agi~~~~Id----~Li~~Tes~~~---------------------~~p-----s~a~~v~~~Lgl~G~~~~~~ 114 (467)
++++|+++|+++++|| .++++|.++.. ..| .++.+|+..||+. ..+
T Consensus 101 a~~AL~dAG~~~~~i~~~~~gv~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~is~~lgl~----Gp~ 176 (430)
T 1ox0_A 101 AQEAVNHANLDVEALNRDRFGVIVASGIGGIKEIEDQVLRLHEKGPKRVKPMTLPKALPNMASGNVAMRFGAN----GVC 176 (430)
T ss_dssp HHHHHHHTTCCTTTSCGGGEEEEEECSSCSHHHHHHHHHHHHHHCGGGSCTTHHHHHSTTHHHHHHHHHHTCC----SCE
T ss_pred HHHHHHHcCCChhhcCccceEEEEEecCCcHHHHHHHHHHHHhcCcccCChhhhhccchhHHHHHHHHHhcCC----Cce
Confidence 9999999999999999 58898876541 111 4788999999982 268
Q ss_pred EeeCCcChHHHHHHHHHHHHHHhCCCCCCEEEEEEeeccc-------------cc-----C--------CCCCCccccce
Q 012253 115 VDSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDSAV-------------YA-----E--------GPARPTGGAAA 168 (467)
Q Consensus 115 ~di~~aC~gg~~AL~~A~~~l~a~~~~~~~aLVV~sD~~~-------------y~-----~--------~~~~~t~GdGA 168 (467)
+++.++|++++.||..|..+|++|.. +.|||+++|... .. + ..+...+||||
T Consensus 177 ~~v~~aCsS~l~Al~~A~~~I~~G~~--d~aLvgG~e~~~~p~~~~~~~~~~~ls~~~~p~~~~~pFd~~~~g~~~geGA 254 (430)
T 1ox0_A 177 KSINTACSSSNDAIGDAFRSIKFGFQ--DVMLVGGTEASITPFAIAGFQALTALSTTEDPTRASIPFDKDRNGFVMGEGS 254 (430)
T ss_dssp ECCCCGGGHHHHHHHHHHHHHHTTSC--SEEEEEEEECCCSHHHHHHHHHTTCBCCCSSTTSSSCTTBTTCCSBCBCCEE
T ss_pred EeecCchHHHHHHHHHHHHHHHcCCC--CEEEEeeeccccCHHHHHHHHhCCCccCCCCCCCCCCCCCCCCCCccccceE
Confidence 99999999999999999999999976 999999999741 00 0 01124579999
Q ss_pred eEEEecCCCC-----ceeeccccccccc-CcccccccCCCCCCceecCcchHHHHHHHHHHHHHHHHHHHHhhhcCCCCc
Q 012253 169 VAMLIGPDAP-----IAFESKLRGSHMS-HAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKYFCQKFEKLEGRQFSM 242 (467)
Q Consensus 169 vA~Ll~~~~~-----~~~~~~~~~~~~~-~~~df~~p~~~~~~~~vdG~~s~~~y~~a~~~~~~~~~~~~~~~~~~~~~~ 242 (467)
+|+||++.+. ..+...+.++... +......|. .++. ....+.+..++ ++++++
T Consensus 255 aavvL~~~~~A~~~g~~i~a~I~g~~~~~dg~~~~~p~-------~~~~--------~~~~ai~~al~------~Agl~~ 313 (430)
T 1ox0_A 255 GMLVLESLEHAEKRGATILAEVVGYGNTCDAYHMTSPH-------PEGQ--------GAIKAIKLALE------EAEISP 313 (430)
T ss_dssp EEEEEEEHHHHHHTTCCCCEEEEEEEEEECCSCSSSCC-------TTCH--------HHHHHHHHHHH------HHTCCG
T ss_pred EEEEECcHHHHHhCCCceEEEEEEEEEecCCCCCCCCC-------CChH--------HHHHHHHHHHH------HhCcCH
Confidence 9999986421 0000001121111 111122232 1221 12223333333 336999
Q ss_pred cccceeccCCchHHHHHHH
Q 012253 243 LDVDYFVFHSPYNKLVQKS 261 (467)
Q Consensus 243 ~d~d~~i~H~p~~k~~~k~ 261 (467)
+|||++..|+.++.+.+..
T Consensus 314 ~dId~ve~Hgtgt~~~D~~ 332 (430)
T 1ox0_A 314 EQVAYVNAHGTSTPANEKG 332 (430)
T ss_dssp GGCCCEECCCCSCHHHHHH
T ss_pred HHcCEEEEeCCcCcccCHH
Confidence 9999999999999876543
|
| >1tqy_A Beta-ketoacyl synthase/acyl transferase; alpha-beta-alpha-beta-alpha, heterodimer, transferase; 2.00A {Streptomyces coelicolor} SCOP: c.95.1.1 c.95.1.1 | Back alignment and structure |
|---|
Probab=99.63 E-value=2.6e-14 Score=147.97 Aligned_cols=293 Identities=13% Similarity=0.107 Sum_probs=178.5
Q ss_pred ceeEEeEEEEecCCceeehhHHhhhh--CCC---------cCeeEEeccceEeecc------CC-----CCCHHHHHHHH
Q 012253 7 KNVGILALDIYFPPTCVLQEALEVHD--GVS---------KGKYTVGLGQDCMAFC------SE-----VEDVISMSLTV 64 (467)
Q Consensus 7 ~~vgI~ai~~y~P~~~v~~~el~~~~--g~~---------~~k~~~Gig~r~~av~------~~-----~Ed~~~ma~~A 64 (467)
+.|-|.++++.+|.-. +.+++.+.. |.+ +..+...++-. ..|. ++ -.....|+++|
T Consensus 3 ~~vaI~G~g~~~p~g~-~~~~~w~~l~~g~~~i~~~~~~~~~~~~~~~~~~-~~fd~~~~~i~~~~~~~~d~~~~l~l~a 80 (424)
T 1tqy_A 3 RRVVITGVGVRAPGGN-GTRQFWELLTSGRTATRRISFFDPSPYRSQVAAE-ADFDPVAEGFGPRELDRMDRASQFAVAC 80 (424)
T ss_dssp CCEEEEEEEEEETTEE-SHHHHHHHHHHTCCCEEECCSSCCTTSSCCEEEC-CCCCHHHHTCCHHHHHHSCHHHHHHHHH
T ss_pred CCEEEEeeEEECCCCC-CHHHHHHHHHcCCCceeeCCCcccccCCcceeEE-eccCHhhcCCCHHHHHhcCHHHHHHHHH
Confidence 3699999999999874 777766553 322 11111000000 0010 10 01246899999
Q ss_pred HHHHHHHcCCCcCCcC----EEEEEeccCCC---------------------------CCCcH-HH----HHHHHhcccC
Q 012253 65 VTSLLEKYKIDPTQIG----RLEVGSETVID---------------------------KSKSI-KT----FLMQIFEKYG 108 (467)
Q Consensus 65 a~~aL~~agi~~~~Id----~Li~~Tes~~~---------------------------~~ps~-a~----~v~~~Lgl~G 108 (467)
++++|+++|+++++|| .|++||.++.. ..|+. +. +|+..||+.
T Consensus 81 a~~AL~dAG~~~~~i~~~~~gv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ia~~lgl~- 159 (424)
T 1tqy_A 81 AREAFAASGLDPDTLDPARVGVSLGSAVAAATSLEREYLLLSDSGRDWEVDAAWLSRHMFDYLVPSVMPAEVAWAVGAE- 159 (424)
T ss_dssp HHHHHHHHTCCTTTCCGGGEEEEEECSSTTHHHHHHHHHHHHTTTTCSSCCGGGCCTTTHHHHSTTHHHHHHHHHHTCC-
T ss_pred HHHHHHHCCCCchhcCCCceEEEEEeCCccHHHHHHHHHHHhhhccCccccChhhhcccccccccchhHhHHHHhcCCC-
Confidence 9999999999999999 69999876532 11222 34 999999982
Q ss_pred CCCeeEEeeCCcChHHHHHHHHHHHHHHhCCCCCCEEEEEEeecc--cc-----------cC------C--------CCC
Q 012253 109 NTDIEGVDSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDSA--VY-----------AE------G--------PAR 161 (467)
Q Consensus 109 ~~~~~~~di~~aC~gg~~AL~~A~~~l~a~~~~~~~aLVV~sD~~--~y-----------~~------~--------~~~ 161 (467)
-.++++.++|++++.||..|..+|++|.. +.|||+++|.. .+ .. . .+.
T Consensus 160 ---gp~~~v~~aCsS~l~Al~~A~~~I~~G~~--d~aLvgG~e~~~~~~~~~~~~~~~~ls~~~~~p~~~~rpfd~~~~G 234 (424)
T 1tqy_A 160 ---GPVTMVSTGCTSGLDSVGNAVRAIEEGSA--DVMFAGAADTPITPIVVACFDAIRATTARNDDPEHASRPFDGTRDG 234 (424)
T ss_dssp ---SCEEEECCGGGHHHHHHHHHHHHHHHTSC--SEEEEEEEECCCSHHHHHHHHHTTCBCCCCSCGGGCCCTTBTTCCC
T ss_pred ---CceEeecCcccHHHHHHHHHHHHHHCCCC--CEEEEeeecccCCHHHHHHHHhhccccCCCCCCCCCccCCCCCCCc
Confidence 25889999999999999999999999976 99999999974 10 10 0 012
Q ss_pred CccccceeEEEecCCC-------C-ceeeccccccccc-CcccccccCCCCCCceecCcchHHHHHHHHHHHHHHHHHHH
Q 012253 162 PTGGAAAVAMLIGPDA-------P-IAFESKLRGSHMS-HAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKYFCQKF 232 (467)
Q Consensus 162 ~t~GdGAvA~Ll~~~~-------~-~~~~~~~~~~~~~-~~~df~~p~~~~~~~~vdG~~s~~~y~~a~~~~~~~~~~~~ 232 (467)
..+||||+|+||++.+ + ... +.++... +......| ..+|. ....+.+..++
T Consensus 235 ~v~geGaaavvL~~~~~A~~~g~~i~a~---I~g~~~~~dg~~~~~p-------~~~g~--------~~~~ai~~al~-- 294 (424)
T 1tqy_A 235 FVLAEGAAMFVLEDYDSALARGARIHAE---ISGYATRCNAYHMTGL-------KADGR--------EMAETIRVALD-- 294 (424)
T ss_dssp BCEECEEEEEEEEEHHHHHHTTCCCCEE---EEEEEEEECSSCSSCC-------CTTCH--------HHHHHHHHHHH--
T ss_pred eeeecceeEEEeccHHHHHhCCCcEEEE---EeeeEEcCCCCCCCCC-------CCCHH--------HHHHHHHHHHH--
Confidence 4569999999998642 1 111 1222111 11111122 22332 12223333333
Q ss_pred HhhhcCCCCccccceeccCCchHHHHHHHHHhhhhhhhccccCchhhHHhhhcCCCCCCCcchhhhhhhHHHHHHHHHHH
Q 012253 233 EKLEGRQFSMLDVDYFVFHSPYNKLVQKSFARLFFNDFLRNASSVDEIAKEKLAPYSTLSDVESYQSRDLEKASQQVAKQ 312 (467)
Q Consensus 233 ~~~~~~~~~~~d~d~~i~H~p~~k~~~k~~~~l~~~~~~~~~~~~~~~~~~~l~~~~g~~~e~~~~~~~~~k~~~~~~~~ 312 (467)
.++++++|||++..|+.++.+.+......+-+-| +.+.
T Consensus 295 ----~agl~~~dId~ve~Hgtgt~~gD~~E~~al~~~f-------------------~~~~------------------- 332 (424)
T 1tqy_A 295 ----ESRTDATDIDYINAHGSGTRQNDRHETAAYKRAL-------------------GEHA------------------- 332 (424)
T ss_dssp ----HHTCCGGGCCEEECCCCCCHHHHHHHHHHHHHHT-------------------GGGG-------------------
T ss_pred ----HcCCCHHHCCEEEecCccCcCcCHHHHHHHHHHh-------------------cccC-------------------
Confidence 3369999999999999998875543221110000 0000
Q ss_pred HhhhhcCCCcccccccCccccchHHHHHHHH---HhhcCcC------------------------CCCCEEEEEEecccc
Q 012253 313 LYDLKVQPSTLIPKQVGNMYTASLYAAFASL---LHEKHSS------------------------LEGKRVIMFSYGSGL 365 (467)
Q Consensus 313 ~~~~~~~~s~~~~~~~GN~~taS~~l~L~~~---l~~~~~~------------------------~~G~~ill~syGsG~ 365 (467)
.++.-+ .+-..+||+.+||-.+.|..+ |++ +.+ .+.+++++-|||-|-
T Consensus 333 ---~~~~v~-s~k~~~GH~~~AaG~~~l~~~~l~l~~-~~ipp~~~~~~~~p~~~~~~v~~~~~~~~~~~a~~~sfG~GG 407 (424)
T 1tqy_A 333 ---RRTPVS-SIKSMVGHSLGAIGSLEIAACVLALEH-GVVPPTANLRTSDPECDLDYVPLEARERKLRSVLTVGSGFGG 407 (424)
T ss_dssp ---GGSCEE-CTHHHHCBCTTTHHHHHHHHHHHHHHH-CEECCBTTCCSBBTTBCSCCCBSSCEECCCSEEEEEEEETTT
T ss_pred ---CCCeee-ccccccccChhhhHHHHHHHHHHHHHc-CCcCCCCCCCCCCCCCCcccCCCcccCCCCCEEEEccccCCc
Confidence 000000 011467999999988777663 333 221 146789999999888
Q ss_pred ceeeEEEEE
Q 012253 366 TATMFSLQL 374 (467)
Q Consensus 366 ~~~~~~~~~ 374 (467)
+....+++.
T Consensus 408 ~n~~~vl~~ 416 (424)
T 1tqy_A 408 FQSAMVLRD 416 (424)
T ss_dssp EEEEEEEEC
T ss_pred eEEEEEEcc
Confidence 877777654
|
| >2gqd_A 3-oxoacyl-[acyl-carrier-protein] synthase 2; duplicated babababb fold, transferase; 2.30A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.61 E-value=7.4e-13 Score=137.61 Aligned_cols=227 Identities=12% Similarity=0.073 Sum_probs=143.8
Q ss_pred ceeEEeEEEEecCCceeehhHHhhhh--CCCc----CeeE-EeccceEee----c-----cCCC-----CCHHHHHHHHH
Q 012253 7 KNVGILALDIYFPPTCVLQEALEVHD--GVSK----GKYT-VGLGQDCMA----F-----CSEV-----EDVISMSLTVV 65 (467)
Q Consensus 7 ~~vgI~ai~~y~P~~~v~~~el~~~~--g~~~----~k~~-~Gig~r~~a----v-----~~~~-----Ed~~~ma~~Aa 65 (467)
..|-|.++++.+|.- .+.+++.+.. |.+. .++. .++..+... + .++. .....|+++|+
T Consensus 28 ~~vaI~G~g~~~P~g-~~~~~~w~~l~~g~~~i~~~~~~~~~~~~~~~~~~i~~fd~~~~~~~~~~~~~d~~~~l~l~aa 106 (437)
T 2gqd_A 28 KRVVITGMGALSPIG-NDVKTTWENALKGVNGIDKITRIDTEPYSVHLAGELKNFNIEDHIDKKEARRMDRFTQYAIVAA 106 (437)
T ss_dssp CCEEEEEEEEEBTTB-SSHHHHHHHHHTTCCCEEECCSSCCTTSSCCEEECCSSCCGGGTSCSTTTTTSCHHHHHHHHHH
T ss_pred CCEEEEEeeEECCCC-CCHHHHHHHHHcCCCceeeCCccccccCccceeEEeCCCChhcCCCHHHHHhcCHHHHHHHHHH
Confidence 469999999999987 4777765542 3221 0000 000000000 0 0111 12578999999
Q ss_pred HHHHHHcCCCcCCcC----EEEEEeccCCC-----------------C---------CCcHHHHHHHHhcccCCCCeeEE
Q 012253 66 TSLLEKYKIDPTQIG----RLEVGSETVID-----------------K---------SKSIKTFLMQIFEKYGNTDIEGV 115 (467)
Q Consensus 66 ~~aL~~agi~~~~Id----~Li~~Tes~~~-----------------~---------~ps~a~~v~~~Lgl~G~~~~~~~ 115 (467)
+++|+++|+++++|| .|++||.++.. . ...++.+|+..||+. . .++
T Consensus 107 ~~AL~dAGl~~~~i~~~~~gv~vg~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~ia~~lgl~---g-p~~ 182 (437)
T 2gqd_A 107 REAVKDAQLDINENTADRIGVWIGSGIGGMETFEIAHKQLMDKGPRRVSPFFVPMLIPDMATGQVSIDLGAK---G-PNG 182 (437)
T ss_dssp HHHHHHHTCCCCTTTGGGEEEEEECSSCCHHHHHHHHHHHHHHCGGGSCTTHHHHHSTTHHHHHHHHHHTCC---S-SEE
T ss_pred HHHHHHcCCCccccCCcceEEEEeecCCcHHHHHHHHHHHHhcCcccCChHHhhhcchhHHHHHHHHHhCCC---C-ceE
Confidence 999999999999999 99999876641 1 125788999999983 2 578
Q ss_pred eeCCcChHHHHHHHHHHHHHHhCCCCCCEEEEEEeecc--cc---------------------cCC---CCCCcccccee
Q 012253 116 DSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDSA--VY---------------------AEG---PARPTGGAAAV 169 (467)
Q Consensus 116 di~~aC~gg~~AL~~A~~~l~a~~~~~~~aLVV~sD~~--~y---------------------~~~---~~~~t~GdGAv 169 (467)
++..+|++++.||..|..+|++|.. +.|||+++|.. .+ .+. .+...+||||+
T Consensus 183 ~v~~aCsS~l~Al~~A~~~I~~G~~--d~aLvgG~e~~~~~~~~~~~~~~~~ls~~~~p~~~~~pfd~~~~G~v~geGaa 260 (437)
T 2gqd_A 183 ATVTACATGTNSIGEAFKIVQRGDA--DAMITGGTEAPITHMAIAGFSASRALSTNDDIETACRPFQEGRDGFVMGEGAG 260 (437)
T ss_dssp CBCCGGGHHHHHHHHHHHHHHTTSC--SEEEEEEEECCCSHHHHHHHHHTTCBCCCCCTTTSSCTTCTTCCSBCBBCEEE
T ss_pred EecCCccHHHHHHHHHHHHHHcCCC--CEEEEeeeccccCHHHHHHHHhccCccCCCCCccccCCCCCCCCCceeeceEE
Confidence 8999999999999999999999976 99999999973 11 011 12346799999
Q ss_pred EEEecCCCCc-----eeeccccccccc-CcccccccCCCCCCceecCcchHHHHHHHHHHHHHHHHHHHHhhhcCCCCcc
Q 012253 170 AMLIGPDAPI-----AFESKLRGSHMS-HAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKYFCQKFEKLEGRQFSML 243 (467)
Q Consensus 170 A~Ll~~~~~~-----~~~~~~~~~~~~-~~~df~~p~~~~~~~~vdG~~s~~~y~~a~~~~~~~~~~~~~~~~~~~~~~~ 243 (467)
|+||++.+.. .+...+.++... +...+..| ..+|. ....+.+..++ +++++++
T Consensus 261 avvL~~~~~A~~~g~~i~a~I~g~~~~~dg~~~~~p-------~~~~~--------~~~~ai~~Al~------~Agl~p~ 319 (437)
T 2gqd_A 261 ILVIESLESAQARGANIYAEIVGYGTTGDAYHITAP-------APEGE--------GGSRAMQAAMD------DAGIEPK 319 (437)
T ss_dssp EEEEEEHHHHHHHTCCCCEEEEEEEEEECCSCSSSC-------CGGGH--------HHHHHHHHHHH------HHTCCGG
T ss_pred EEEECcHHHHHhCCCceEEEEEEEEecCCCCCCCCC-------CCCHH--------HHHHHHHHHHH------HcCCCHh
Confidence 9999764210 000001122111 11112222 12221 12223333333 3469999
Q ss_pred ccceeccCCchHHHHHHH
Q 012253 244 DVDYFVFHSPYNKLVQKS 261 (467)
Q Consensus 244 d~d~~i~H~p~~k~~~k~ 261 (467)
|||++..|+.++++.+.+
T Consensus 320 dId~ve~HgtgT~~~D~~ 337 (437)
T 2gqd_A 320 DVQYLNAHGTSTPVGDLN 337 (437)
T ss_dssp GCCEEECCCCSCHHHHHH
T ss_pred hCCEEEEECCCCcCcCHH
Confidence 999999999999876543
|
| >1e5m_A KAS II, beta ketoacyl acyl carrier protein synthase II; condensing enzyme, biosynthetic role, carbon-carbon bond formation; 1.54A {Synechocystis SP} SCOP: c.95.1.1 c.95.1.1 | Back alignment and structure |
|---|
Probab=99.61 E-value=4.8e-13 Score=138.13 Aligned_cols=233 Identities=12% Similarity=0.076 Sum_probs=143.4
Q ss_pred CCCCCCceeEEeEEEEecCCceeehhHHhhhh--CCCc----CeeE-EeccceEeeccC-C-------------CCCHHH
Q 012253 1 MTSWHPKNVGILALDIYFPPTCVLQEALEVHD--GVSK----GKYT-VGLGQDCMAFCS-E-------------VEDVIS 59 (467)
Q Consensus 1 ~~~~~~~~vgI~ai~~y~P~~~v~~~el~~~~--g~~~----~k~~-~Gig~r~~av~~-~-------------~Ed~~~ 59 (467)
|..+..+.|-|.++++.+|.- .+.+++.+.. |.+. .++. .++..+.....+ . -.....
T Consensus 1 m~~~~m~~v~I~G~g~~~p~g-~~~~~~w~~l~~g~~~i~~~~~~~~~~~~~~~~~~i~~fd~~~~~~~~~~~~~d~~~~ 79 (416)
T 1e5m_A 1 MANLEKKRVVVTGLGAITPIG-NTLQDYWQGLMEGRNGIGPITRFDASDQACRFGGEVKDFDATQFLDRKEAKRMDRFCH 79 (416)
T ss_dssp -----CCCEEEEEEEEEBTTB-SSHHHHHHHHHTTCCCEEECCSSCCTTSSCCEEECCCSCCGGGTSCHHHHHTSCHHHH
T ss_pred CCCCCCCCEEEEeeeEECCCC-CCHHHHHHHHHcCCCeEeeCCccccccCccceeEEeCCCCccccCCHHHHHhcCHHHH
Confidence 444433579999999999987 4666665542 2211 0010 011111111000 0 012358
Q ss_pred HHHHHHHHHHHHcCCCcCCcC----EEEEEeccCCC-----------------CC---------CcHHHHHHHHhcccCC
Q 012253 60 MSLTVVTSLLEKYKIDPTQIG----RLEVGSETVID-----------------KS---------KSIKTFLMQIFEKYGN 109 (467)
Q Consensus 60 ma~~Aa~~aL~~agi~~~~Id----~Li~~Tes~~~-----------------~~---------ps~a~~v~~~Lgl~G~ 109 (467)
|+++|++++|+++|+++++|| .|++||.++.. .. ..++.+|+..||+.
T Consensus 80 l~l~aa~~Al~dAg~~~~~i~~~~~gv~~g~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~ia~~lgl~-- 157 (416)
T 1e5m_A 80 FAVCASQQAINDAKLVINELNADEIGVLIGTGIGGLKVLEDQQTILLDKGPSRCSPFMIPMMIANMASGLTAINLGAK-- 157 (416)
T ss_dssp HHHHHHHHHHHHHTCCCCTTTGGGEEEEEECSSCSHHHHHHHHHHHHHHCGGGSCTTHHHHHSTTHHHHHHHHHHTCC--
T ss_pred HHHHHHHHHHHHcCCChhhcCccceEEEEeecCCcHHHHHHHHHHHHhcCcccCChhHhhhhhhHHHHHHHHHHhCCC--
Confidence 999999999999999999999 79999876531 11 24788999999982
Q ss_pred CCeeEEeeCCcChHHHHHHHHHHHHHHhCCCCCCEEEEEEeecc--cc-----------c--------------CCCCCC
Q 012253 110 TDIEGVDSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDSA--VY-----------A--------------EGPARP 162 (467)
Q Consensus 110 ~~~~~~di~~aC~gg~~AL~~A~~~l~a~~~~~~~aLVV~sD~~--~y-----------~--------------~~~~~~ 162 (467)
..++++..+|++++.||..|..+|++|.. +.|||+++|.. .+ . ...+..
T Consensus 158 --gp~~~v~~aCsS~l~Al~~A~~~I~~G~~--d~~LvgG~e~~~~~~~~~~~~~~~~ls~~~~~p~~~~rpfd~~~~G~ 233 (416)
T 1e5m_A 158 --GPNNCTVTACAAGSNAIGDAFRLVQNGYA--KAMICGGTEAAITPLSYAGFASARALSFRNDDPLHASRPFDKDRDGF 233 (416)
T ss_dssp --SCEECCCCGGGHHHHHHHHHHHHHHTTSC--SEEEEEEEECCCSHHHHHHHHHTTCBCCCTTCGGGTCCTTBTTCCSB
T ss_pred --CceeCccchhHHHHHHHHHHHHHHHcCCC--CEEEEeeecccCCHHHHHHHHHcCCccCCCCCCccccccCccCCCCc
Confidence 25789999999999999999999999976 99999999963 11 0 001224
Q ss_pred ccccceeEEEecCCCC-----ceeeccccccccc-CcccccccCCCCCCceecCcchHHHHHHHHHHHHHHHHHHHHhhh
Q 012253 163 TGGAAAVAMLIGPDAP-----IAFESKLRGSHMS-HAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKYFCQKFEKLE 236 (467)
Q Consensus 163 t~GdGAvA~Ll~~~~~-----~~~~~~~~~~~~~-~~~df~~p~~~~~~~~vdG~~s~~~y~~a~~~~~~~~~~~~~~~~ 236 (467)
.+||||+|+||++.+. ..+...+.++... +...+..|. .+|. ....+.+..++
T Consensus 234 v~geGaaavvL~~~~~A~~~g~~i~a~I~g~~~~~d~~~~~~p~-------~~~~--------~~~~ai~~al~------ 292 (416)
T 1e5m_A 234 VMGEGSGILILEELESALARGAKIYGEMVGYAMTCDAYHITAPV-------PDGR--------GATRAIAWALK------ 292 (416)
T ss_dssp CBBCEEEEEEEEEHHHHHHTTCCCCEEEEEEEEEECCSCSSSCC-------TTCH--------HHHHHHHHHHH------
T ss_pred eeeeeEEEEEECcHHHHHHCCCeEEEEEEEEEEccCCCCCCCCC-------CCHH--------HHHHHHHHHHH------
Confidence 5799999999976321 0000001122111 111122232 2232 12223333333
Q ss_pred cCCCCccccceeccCCchHHHHHHH
Q 012253 237 GRQFSMLDVDYFVFHSPYNKLVQKS 261 (467)
Q Consensus 237 ~~~~~~~d~d~~i~H~p~~k~~~k~ 261 (467)
+++++++|||++..|+.++++.+..
T Consensus 293 ~agl~~~dId~ve~Hgtgt~~~D~~ 317 (416)
T 1e5m_A 293 DSGLKPEMVSYINAHGTSTPANDVT 317 (416)
T ss_dssp HHTCCGGGCCEEECCCCSCHHHHHH
T ss_pred HcCCCHhHCCEEEEECCCCcCcCHH
Confidence 3469999999999999998876544
|
| >3goa_A 3-ketoacyl-COA thiolase; metabolism, fatty acid, phospholipid, IDP01071, acyltransferase, cytoplasm, fatty acid metabolism; 1.70A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.58 E-value=6e-14 Score=143.60 Aligned_cols=96 Identities=14% Similarity=0.123 Sum_probs=88.9
Q ss_pred CCCHHHHHHHHHHHHHHHc-CCCcCCcCEEEEEeccCCCC-CCcHHHHHHHHhcccCCCCeeEEeeCCcChHHHHHHHHH
Q 012253 54 VEDVISMSLTVVTSLLEKY-KIDPTQIGRLEVGSETVIDK-SKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAALFNC 131 (467)
Q Consensus 54 ~Ed~~~ma~~Aa~~aL~~a-gi~~~~Id~Li~~Tes~~~~-~ps~a~~v~~~Lgl~G~~~~~~~di~~aC~gg~~AL~~A 131 (467)
+++..+|+++|++++|+++ |++|++||.|++++.++... .+.++..++..+|+ +..+.++++..+|.+++.||.+|
T Consensus 24 ~~~~~~L~~~a~~~Al~~a~gi~~~~Id~v~~g~~~~~~~~~~~~a~~~~~~~Gl--~~~~p~~~v~~aCss~l~Al~~A 101 (387)
T 3goa_A 24 NVRAEDLSAHLMRSLLARNPSLTAATLDDIYWGCVQQTLEQGFNIARNAALLAEI--PHSVPAVTVNRLCGSSMQALHDA 101 (387)
T ss_dssp TSCHHHHHHHHHHHHHHHCTTSCGGGCCEEEEECSCCSBTTTTTHHHHHHHHTTC--CTTSCCEEEECGGGHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhccCCCHHHcCEEEEEcccCCcccccHHHHHHHHHcCC--CCCCcEeEecCcchHHHHHHHHH
Confidence 6789999999999999999 99999999999999988765 68899999999998 56789999999999999999999
Q ss_pred HHHHHhCCCCCCEEEEEEeecc
Q 012253 132 VNWVESASWDGRYGLVVCTDSA 153 (467)
Q Consensus 132 ~~~l~a~~~~~~~aLVV~sD~~ 153 (467)
...|++|.+ +.|||+++|.+
T Consensus 102 ~~~I~sG~~--d~vLv~G~e~~ 121 (387)
T 3goa_A 102 ARMIMTGDA--QVCLVGGVEHM 121 (387)
T ss_dssp HHHHHTTSC--SEEEEEEEECT
T ss_pred HHHHhCCCC--CEEEEEEEecC
Confidence 999999976 99999999954
|
| >3svk_A Acetyl-COA acetyltransferase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.20A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=99.58 E-value=6.3e-14 Score=144.33 Aligned_cols=97 Identities=16% Similarity=0.140 Sum_probs=81.7
Q ss_pred CCCCHHHHHHHHHHHHHHH-cCCCcCCcCEEEEEeccCCCC-CCcHHHHHHHHhcccCCCCeeEEeeCCcChHHHHHHHH
Q 012253 53 EVEDVISMSLTVVTSLLEK-YKIDPTQIGRLEVGSETVIDK-SKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAALFN 130 (467)
Q Consensus 53 ~~Ed~~~ma~~Aa~~aL~~-agi~~~~Id~Li~~Tes~~~~-~ps~a~~v~~~Lgl~G~~~~~~~di~~aC~gg~~AL~~ 130 (467)
.+++..+|+++|++++|++ +|++|++||.|++++.++... .+.++..++..||+ +..+.+++++.+|++++.||..
T Consensus 28 ~~~~~~~L~~~A~~~AL~~~AGl~~~dId~vi~g~~~~~~~~~~~~a~~va~~lGl--p~~~pa~~v~~~Css~~~Al~~ 105 (407)
T 3svk_A 28 TEVKPLNLVVGLVDELRRRYPDLDETLISDMILGVVSPVGDQGGDIARTAVLAAGL--PETTGGVQLNRFCASGLEAVNT 105 (407)
T ss_dssp TTSCHHHHHHHHHHHHHHHSTTCCGGGEEEEEEECC--------CHHHHHHHHTTC--CTTCEEEEEC---CBSCCHHHH
T ss_pred CCCCHHHHHHHHHHHHHhhhcCcCHHHCCEEEEEecCccccccCcHHHHHHHHcCC--CCCCceEEecCcChhHHHHHHH
Confidence 4678999999999999999 999999999999999887653 67899999999998 6789999999999999999999
Q ss_pred HHHHHHhCCCCCCEEEEEEeecc
Q 012253 131 CVNWVESASWDGRYGLVVCTDSA 153 (467)
Q Consensus 131 A~~~l~a~~~~~~~aLVV~sD~~ 153 (467)
|...|++|.+ +.|||+++|.+
T Consensus 106 A~~~I~sG~~--d~vLv~G~e~~ 126 (407)
T 3svk_A 106 AAQKVRSGWD--DLVLAGGVESM 126 (407)
T ss_dssp HHHHHHHTSC--CEEEEEEEECC
T ss_pred HHHHHHcCCC--CEEEEEEEccc
Confidence 9999999976 99999999865
|
| >2vu1_A Acetyl-COA acetyltransferase; acyltransferase, PHB biosynthesis, thiolase FOL; HET: CSO OPI; 1.51A {Zoogloea ramigera} PDB: 1nl7_A* 1ou6_A* 2vu0_A* 1m4s_A* 2vu2_A* 2wkv_A* 2wku_A* 1m1t_A 1m3k_A 1m1o_A 1m3z_A* 2vtz_A* 2wl5_A* 2wkt_A* 2wl4_A* 1m4t_A* 2wl6_A 1qfl_A* 1dlv_A* 1dlu_A* ... | Back alignment and structure |
|---|
Probab=99.55 E-value=2.5e-13 Score=139.14 Aligned_cols=96 Identities=9% Similarity=0.068 Sum_probs=87.4
Q ss_pred CCCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHhcccCCCCeeEEeeCCcChHHHHHHHHHHH
Q 012253 54 VEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAALFNCVN 133 (467)
Q Consensus 54 ~Ed~~~ma~~Aa~~aL~~agi~~~~Id~Li~~Tes~~~~~ps~a~~v~~~Lgl~G~~~~~~~di~~aC~gg~~AL~~A~~ 133 (467)
+++..+|+++|++++|+++|+++++||.+++++.++....+.++..|+..||+ .+...++.+..+|++++.||..|..
T Consensus 24 ~~~~~~L~~~a~~~Al~dAgl~~~~id~~~~g~~~~~~~~~~~a~~ia~~lgl--~~~~p~~~v~~aCaSgl~Al~~A~~ 101 (392)
T 2vu1_A 24 NTPAHELGATVISAVLERAGVAAGEVNEVILGQVLPAGEGQNPARQAAMKAGV--PQEATAWGMNQLCGSGLRAVALGMQ 101 (392)
T ss_dssp TCCHHHHHHHHHHHHHHHHTCCGGGCCEEEEECSCCTTSCSCHHHHHHHHTTC--CTTSEEEEEECGGGHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEEecCCCCCCcHHHHHHHHHcCC--CCCceEEEecccchHHHHHHHHHHH
Confidence 57899999999999999999999999999999988766567899999999998 4447899999999999999999999
Q ss_pred HHHhCCCCCCEEEEEEeecc
Q 012253 134 WVESASWDGRYGLVVCTDSA 153 (467)
Q Consensus 134 ~l~a~~~~~~~aLVV~sD~~ 153 (467)
.|++|.. +.|||+++|.+
T Consensus 102 ~I~~G~~--d~vlvgG~e~~ 119 (392)
T 2vu1_A 102 QIATGDA--SIIVAGGMESM 119 (392)
T ss_dssp HHHTTSC--SCEEEEEEEES
T ss_pred HHHCCCC--CEEEEEEEecc
Confidence 9999966 99999999864
|
| >3ho9_A 3-oxoacyl-[acyl-carrier-protein] synthase 2; FABF, platensimycin, platencin A1, KAS2, acyltransferase, fatty acid biosynthesis; HET: N3A; 1.90A {Escherichia coli} PDB: 3hnz_A* 3ho2_A* 3i8p_A* 3g11_A* 2gfx_A* 3g0y_A* 2gfv_A* 2gfw_A 2gfy_A* 1kas_A 1b3n_A | Back alignment and structure |
|---|
Probab=99.54 E-value=2e-12 Score=133.99 Aligned_cols=164 Identities=10% Similarity=0.064 Sum_probs=115.1
Q ss_pred CceeEEeEEEEecCCceeehhHHhhhh--CCCc----CeeE-EeccceEee-ccC--C-----------CCCHHHHHHHH
Q 012253 6 PKNVGILALDIYFPPTCVLQEALEVHD--GVSK----GKYT-VGLGQDCMA-FCS--E-----------VEDVISMSLTV 64 (467)
Q Consensus 6 ~~~vgI~ai~~y~P~~~v~~~el~~~~--g~~~----~k~~-~Gig~r~~a-v~~--~-----------~Ed~~~ma~~A 64 (467)
...|-|.++++.+|-- .+.+++.+.. |.+. .++. .++..+.-. +.+ . -.....|+++|
T Consensus 17 ~~~v~I~G~g~~~p~g-~~~~~~w~~l~~g~~~i~~~~~~~~~~~~~~~~~~v~~fd~~~~i~~~~~~~~d~~~~l~l~a 95 (427)
T 3ho9_A 17 KRRVVVTGLGMLSPVG-NTVESTWKALLAGQSGISLIDHFDTSAYATKFAGLVKDFNCEDIISRKEQRKMDAFIQYGIVA 95 (427)
T ss_dssp CCCEEEEEEEEEBTTB-SSHHHHHHHHHTTCCCEEECCSSCCTTCSCCEEECCSSCCCTTTSCHHHHTTSCHHHHHHHHH
T ss_pred CCCEEEEeeeEECCCC-CCHHHHHHHHHcCCCceeeCCccccccCccceeeEcCCCChhhcCCHHHHhhCCHHHHHHHHH
Confidence 3579999999999986 4777766552 3211 0010 000000000 100 0 01246899999
Q ss_pred HHHHHHHcCCCcCCcC----EEEEEeccCC--------------------------CCCCcHHHHHHHHhcccCCCCeeE
Q 012253 65 VTSLLEKYKIDPTQIG----RLEVGSETVI--------------------------DKSKSIKTFLMQIFEKYGNTDIEG 114 (467)
Q Consensus 65 a~~aL~~agi~~~~Id----~Li~~Tes~~--------------------------~~~ps~a~~v~~~Lgl~G~~~~~~ 114 (467)
+++||+++|+++++|| .++++|.++. ...+.++..|+..||+.| .+
T Consensus 96 a~~AL~dAGl~~~~i~~~~~gv~vg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~is~~lgl~G----p~ 171 (427)
T 3ho9_A 96 GVQAMQDSGLEITEENATRIGAAIGSGIGGLGLIEENHTSLMNGGPRKISPFFVPSTIVNMVAGHLTIMYGLRG----PS 171 (427)
T ss_dssp HHHHHHHHTCCCCTTTGGGEEEEEECSSCCHHHHHHHHHHHHHHCGGGSCTTHHHHHSTTHHHHHHHHHHTCCS----CE
T ss_pred HHHHHHHCCCCcccccccceEEEEccccccHHHHHHHHHHHHhcCccccCcceeccccchHHHHHHHHHhCCCC----Ce
Confidence 9999999999999999 5888887531 112357889999999832 48
Q ss_pred EeeCCcChHHHHHHHHHHHHHHhCCCCCCEEEEEEeeccc----c-----------------------cCCCCCCccccc
Q 012253 115 VDSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDSAV----Y-----------------------AEGPARPTGGAA 167 (467)
Q Consensus 115 ~di~~aC~gg~~AL~~A~~~l~a~~~~~~~aLVV~sD~~~----y-----------------------~~~~~~~t~GdG 167 (467)
+.+..||++++.||..|..+|++|.+ +.|||+++|... + ....+....|||
T Consensus 172 ~~v~taCsS~l~Al~~A~~~I~~G~~--d~aLvgG~e~~~~p~~~~~~~~~~~ls~~~~~~~~~~~pfd~~~~G~v~geG 249 (427)
T 3ho9_A 172 ISIATAATSGVHNIGHAARIIAYGDA--DVMVAGGAEKASTPLGVGGFGAARALSTRNDNPQAASRPWDKERDGFVLGDG 249 (427)
T ss_dssp ECCCCGGGHHHHHHHHHHHHHHHTSC--SEEEEEEEECCCSHHHHHHHHHTTCBCCCTTCHHHHCCTTBTTCCSBCBBCE
T ss_pred ecccchhHHHHHHHHHHHHHHHcCCC--CEEEEeeecccCCHHHHHHHHhccCcccCCCCCCcccCCccCCCCCceeeee
Confidence 89999999999999999999999976 999999999862 0 001123467999
Q ss_pred eeEEEecCC
Q 012253 168 AVAMLIGPD 176 (467)
Q Consensus 168 AvA~Ll~~~ 176 (467)
|+|+||++.
T Consensus 250 AaavvL~~~ 258 (427)
T 3ho9_A 250 AGMLVLEEY 258 (427)
T ss_dssp EEEEEEEEH
T ss_pred EEEEEEccH
Confidence 999999863
|
| >1ulq_A Putative acetyl-COA acetyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 3.00A {Thermus thermophilus} SCOP: c.95.1.1 c.95.1.1 | Back alignment and structure |
|---|
Probab=99.54 E-value=2.8e-13 Score=139.30 Aligned_cols=97 Identities=7% Similarity=0.124 Sum_probs=89.2
Q ss_pred CCCCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEeccCCCC-CCcHHHHHHHHhcccCCCCeeEEeeCCcChHHHHHHHHH
Q 012253 53 EVEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDK-SKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAALFNC 131 (467)
Q Consensus 53 ~~Ed~~~ma~~Aa~~aL~~agi~~~~Id~Li~~Tes~~~~-~ps~a~~v~~~Lgl~G~~~~~~~di~~aC~gg~~AL~~A 131 (467)
.++++.+|+++|++++|+++|+++++||.|++++.++... .+.++..|+..||+ +.+..++++.++|++++.||..|
T Consensus 22 ~~~~~~~L~~~Aa~~Al~dAgl~~~~id~v~~g~~~~~~~~~~~~a~~va~~lGl--~~~~p~~~v~~aCas~~~Al~~A 99 (401)
T 1ulq_A 22 ASVRPDDLLAHALSVLVDRSGVPKEEVEDVYAGCANQAGEDNRNVARMALLLAGF--PVEVAGCTVNRLCGSGLEAVAQA 99 (401)
T ss_dssp TTSCHHHHHHHHHHHHHHHHTCCGGGCCEEEEECSCCSSTTTTTHHHHHHHHTTC--CTTCEEEEEECGGGHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEEecccCCCCCChHHHHHHHHhCC--CCCccEeeccccchHHHHHHHHH
Confidence 4788999999999999999999999999999999887755 57899999999998 55789999999999999999999
Q ss_pred HHHHHhCCCCCCEEEEEEeecc
Q 012253 132 VNWVESASWDGRYGLVVCTDSA 153 (467)
Q Consensus 132 ~~~l~a~~~~~~~aLVV~sD~~ 153 (467)
..+|++|.. +.|||+++|..
T Consensus 100 ~~~I~~G~~--d~vLv~G~e~~ 119 (401)
T 1ulq_A 100 ARAIWAGEG--KVYIGSGVESM 119 (401)
T ss_dssp HHHHHTTSC--SEEEEEEEEES
T ss_pred HHHHHCCCC--CEEEEEEEeec
Confidence 999999976 99999999864
|
| >1wl4_A Acetyl-coenzyme A acetyltransferase 2; thiolase fold; HET: COA; 1.55A {Homo sapiens} PDB: 1wl5_A | Back alignment and structure |
|---|
Probab=99.54 E-value=3.8e-13 Score=138.06 Aligned_cols=96 Identities=10% Similarity=0.060 Sum_probs=88.0
Q ss_pred CCCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHhcccCCCCeeEEeeCCcChHHHHHHHHHHH
Q 012253 54 VEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAALFNCVN 133 (467)
Q Consensus 54 ~Ed~~~ma~~Aa~~aL~~agi~~~~Id~Li~~Tes~~~~~ps~a~~v~~~Lgl~G~~~~~~~di~~aC~gg~~AL~~A~~ 133 (467)
+++..+|+++|++++|+++|+++++||.+++++.++....+.++.+|+..||+ +....++++..+|++++.||..|..
T Consensus 27 ~~~~~~L~~~a~~~Al~dAGl~~~~id~v~~g~~~~~~~~~~~a~~ia~~lgl--~~~~p~~~v~~aCaSg~~Ai~~A~~ 104 (397)
T 1wl4_A 27 AVPVQDLGSTVIKEVLKRATVAPEDVSEVIFGHVLAAGCGQNPVRQASVGAGI--PYSVPAWSCQMICGSGLKAVCLAVQ 104 (397)
T ss_dssp TSCHHHHHHHHHHHHHHHHTCCGGGCCEEEEECSCCTTSCSCHHHHHHHHTTC--CTTSCEEEECCGGGHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEEecCCCCCCCHHHHHHHHHcCC--CCCccEEEecCcChhHHHHHHHHHH
Confidence 57889999999999999999999999999999988866668899999999998 4578899999999999999999999
Q ss_pred HHHhCCCCCCEEEEEEeecc
Q 012253 134 WVESASWDGRYGLVVCTDSA 153 (467)
Q Consensus 134 ~l~a~~~~~~~aLVV~sD~~ 153 (467)
+|++|.. +.+||+++|.+
T Consensus 105 ~I~~G~~--d~vlagG~e~~ 122 (397)
T 1wl4_A 105 SIGIGDS--SIVVAGGMENM 122 (397)
T ss_dssp HHHTTSC--SEEEEEEEEES
T ss_pred HHHCCCC--CEEEEEEEeec
Confidence 9999976 99999999864
|
| >1j3n_A 3-oxoacyl-(acyl-carrier protein) synthase II; condensing enzymes, fatty acid elongation, acyl-carrier protein (ACP); HET: CIT; 2.00A {Thermus thermophilus} SCOP: c.95.1.1 c.95.1.1 | Back alignment and structure |
|---|
Probab=99.52 E-value=2.2e-12 Score=132.86 Aligned_cols=225 Identities=16% Similarity=0.149 Sum_probs=141.1
Q ss_pred ceeEEeEEEEecCCceeehhHHhhhh--CCC---------cCeeEEeccceEeecc-----C-----CCCCHHHHHHHHH
Q 012253 7 KNVGILALDIYFPPTCVLQEALEVHD--GVS---------KGKYTVGLGQDCMAFC-----S-----EVEDVISMSLTVV 65 (467)
Q Consensus 7 ~~vgI~ai~~y~P~~~v~~~el~~~~--g~~---------~~k~~~Gig~r~~av~-----~-----~~Ed~~~ma~~Aa 65 (467)
+.|-|.++++.+|--. +.+++.+.. |.+ ...+...++-. ..+. + .-.....|+++|+
T Consensus 2 ~~v~I~G~g~~~p~g~-~~~~~w~~l~~g~~~~~~~~~~~~~~~~~~~~~~-~~fd~~~~~~~~~~~~~d~~~~l~~~aa 79 (408)
T 1j3n_A 2 RRVVVTGLGALTPIGV-GQEAFHKAQLAGKSGVRPITRFDASALPVRIAAE-VDVDPGAYLDRKELRRLDRFVQYALIAA 79 (408)
T ss_dssp CCEEEEEEEEEETTEE-SHHHHHHHHHHTCCCEEECCSSCCTTSSCCEEEC-CCCCGGGTSCHHHHTTSCHHHHHHHHHH
T ss_pred CCEEEEEeEEECCCCC-CHHHHHHHHHcCCCeeeeccccCcccCccceEEE-EccChhhcCCHHHHHhcCHHHHHHHHHH
Confidence 3699999999999874 777765542 321 11110000000 0010 0 0123578999999
Q ss_pred HHHHHHcCCCcCCcCE----EEEEeccCCCC-------------------------CC-cHHHHHHHHhcccCCCCeeEE
Q 012253 66 TSLLEKYKIDPTQIGR----LEVGSETVIDK-------------------------SK-SIKTFLMQIFEKYGNTDIEGV 115 (467)
Q Consensus 66 ~~aL~~agi~~~~Id~----Li~~Tes~~~~-------------------------~p-s~a~~v~~~Lgl~G~~~~~~~ 115 (467)
+++|+++|+++++||. ++++|.++.+. .+ .++.+|+..||+.| .++
T Consensus 80 ~~AL~dAGl~~~~id~~~~gv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lgl~g----p~~ 155 (408)
T 1j3n_A 80 QLALEDAGLKPEDLDPERVGTLVGTGIGGMETWEAQSRVFLERGPNRISPFFIPMMIANMASAHIAMRYGFTG----PSS 155 (408)
T ss_dssp HHHHHHHTCCGGGSCGGGEEEEEECSSCCHHHHHHHHHHHHHHCGGGSCTTHHHHHSTTHHHHHHHHHHTCCS----CBC
T ss_pred HHHHHHcCCCccccCCCceEEEEEecCCcHHHHHHHHHHHHhcCcccCChhhhhhhhhhHHHHHHHHHhCCCC----cee
Confidence 9999999999999984 78888765421 12 46889999999832 578
Q ss_pred eeCCcChHHHHHHHHHHHHHHhCCCCCCEEEEEEeecc--c-----------cc--------------CCCCCCccccce
Q 012253 116 DSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDSA--V-----------YA--------------EGPARPTGGAAA 168 (467)
Q Consensus 116 di~~aC~gg~~AL~~A~~~l~a~~~~~~~aLVV~sD~~--~-----------y~--------------~~~~~~t~GdGA 168 (467)
++.++|++++.||..|..+|++|.. +.|||+++|.. . +. ...+...+||||
T Consensus 156 ~v~~aCsS~l~Al~~A~~~I~~G~~--d~aLvgG~e~~~~~~~~~~~~~~~~ls~~~~~p~~~~~pfd~~~dg~v~geGa 233 (408)
T 1j3n_A 156 TVVTACATGADALGSALRMIQLGEA--DLVLAGGTEAAITPMAIGAFAVMRALSTRNEEPEKASRPFTLSRDGFVMGEGA 233 (408)
T ss_dssp CBCCGGGHHHHHHHHHHHHHHTTSC--SEEEEEEEECCCSHHHHHHHHHTTCBCCCTTCHHHHCCTTBTTCCCBCBBCEE
T ss_pred CccCchHHHHHHHHHHHHHHHcCCC--CEEEEeeecccCCHHHHHHHHhcccccCCCCCCCcCcccCcCCCCceEEeeeE
Confidence 8999999999999999999999976 99999999973 1 11 011235679999
Q ss_pred eEEEecCCCC-----ceeeccccccccc-CcccccccCCCCCCceecCcchHHHHHHHHHHHHHHHHHHHHhhhcCCCCc
Q 012253 169 VAMLIGPDAP-----IAFESKLRGSHMS-HAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKYFCQKFEKLEGRQFSM 242 (467)
Q Consensus 169 vA~Ll~~~~~-----~~~~~~~~~~~~~-~~~df~~p~~~~~~~~vdG~~s~~~y~~a~~~~~~~~~~~~~~~~~~~~~~ 242 (467)
+|+||++.+. ..+...+.++... +......| ..++. ....+.+..++ ++++++
T Consensus 234 aavvL~~~~~A~~~g~~i~a~i~g~~~~~d~~~~~~p-------~~~~~--------~~~~ai~~al~------~Agl~~ 292 (408)
T 1j3n_A 234 GVLVLEAYEHAKKRGARIYAELVGFGRSADAHHITEP-------HPEGK--------GAALAMARALK------DAGIAP 292 (408)
T ss_dssp EEEEEEEHHHHHHTTCCCCEEEEEEEEEECCSCSSCC-------CTTCH--------HHHHHHHHHHH------HHTCCG
T ss_pred EEEEEeeHHHHHhCCCcEEEEEEEEEEcCCCCCCCCC-------CCCHH--------HHHHHHHHHHH------HcCCCH
Confidence 9999976321 0000001121111 11111222 12222 11222333322 336999
Q ss_pred cccceeccCCchHHHHHH
Q 012253 243 LDVDYFVFHSPYNKLVQK 260 (467)
Q Consensus 243 ~d~d~~i~H~p~~k~~~k 260 (467)
+|||++..|+.++++.+.
T Consensus 293 ~dId~ve~Hgtgt~~gD~ 310 (408)
T 1j3n_A 293 EQVGYINAHGTSTPVGDR 310 (408)
T ss_dssp GGCCEEECCCCSCHHHHH
T ss_pred HHcCEEEEeCCcCcccCH
Confidence 999999999999987443
|
| >2ib8_A Acetyl-COA acetyltransferase; thiolase fold, potassium ION, chloride, beta-alpha-beta-ALPH alpha-beta-BETA topology; HET: MES; 1.85A {Homo sapiens} PDB: 2ib7_A* 2ib9_A* 2ibu_A* 2ibw_A* 2iby_A* 2f2s_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=1.1e-12 Score=134.51 Aligned_cols=96 Identities=8% Similarity=0.013 Sum_probs=88.3
Q ss_pred CCCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHhcccCCCCeeEEeeCCcChHHHHHHHHHHH
Q 012253 54 VEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAALFNCVN 133 (467)
Q Consensus 54 ~Ed~~~ma~~Aa~~aL~~agi~~~~Id~Li~~Tes~~~~~ps~a~~v~~~Lgl~G~~~~~~~di~~aC~gg~~AL~~A~~ 133 (467)
+++..+|+++|++++|+++|+++++||.+++++.++....+..+..|+..||+ +.+..++++.++|++++.||..|..
T Consensus 29 ~~~~~~l~~~a~~~Al~dAgl~~~~id~~~~g~~~~~~~~~~~a~~va~~lgl--~~~~p~~~v~~aCaS~~~Al~~A~~ 106 (395)
T 2ib8_A 29 LLPATKLGSIAIQGAIEKAGIPKEEVKEAYMGNVLQGGEGQAPTRQAVLGAGL--PISTPCTTINKVCASGMKAIMMASQ 106 (395)
T ss_dssp TSCHHHHHHHHHHHHHHHHTCCGGGCCEEEEECSCCTTSCSCHHHHHHHHTTC--CTTCCEEEEECGGGHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEEeccCCCCCchHHHHHHHHcCC--CCCceEEEecccccHHHHHHHHHHH
Confidence 57899999999999999999999999999999988877678899999999998 4578899999999999999999999
Q ss_pred HHHhCCCCCCEEEEEEeecc
Q 012253 134 WVESASWDGRYGLVVCTDSA 153 (467)
Q Consensus 134 ~l~a~~~~~~~aLVV~sD~~ 153 (467)
+|++|.. +.+||+++|..
T Consensus 107 ~I~~G~~--d~vlvgG~e~~ 124 (395)
T 2ib8_A 107 SLMCGHQ--DVMVAGGMESM 124 (395)
T ss_dssp HHHTTSC--SEEEEEEEEEG
T ss_pred HHHCCCC--CEEEEEeeecc
Confidence 9999976 99999999863
|
| >4ewg_A Beta-ketoacyl synthase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, transferase; 2.25A {Burkholderia phymatum} | Back alignment and structure |
|---|
Probab=99.51 E-value=8e-12 Score=128.80 Aligned_cols=225 Identities=12% Similarity=0.106 Sum_probs=141.8
Q ss_pred ceeEEeEEEEecCCceeehhHHhhhh--CCCcC----eeE-E-eccceEee----ccC----------CCCCHHHHHHHH
Q 012253 7 KNVGILALDIYFPPTCVLQEALEVHD--GVSKG----KYT-V-GLGQDCMA----FCS----------EVEDVISMSLTV 64 (467)
Q Consensus 7 ~~vgI~ai~~y~P~~~v~~~el~~~~--g~~~~----k~~-~-Gig~r~~a----v~~----------~~Ed~~~ma~~A 64 (467)
+.|-|.++++.+|-- .+.+++.+.. |.+.= .+. . ++..+... +.. .-.....|++.|
T Consensus 6 ~~v~ItG~g~~~p~g-~~~~~~w~~l~~g~~~i~~~~~~~~~~~~~~~~~~~v~~fd~~~~i~~~~~~~~d~~~~l~l~a 84 (412)
T 4ewg_A 6 KRVVITGMGGVTALG-SRWDEIEAALKAGRNAVRRMPDWDYFESLHTRLAAPLPGFAQPADWPRKKTRSMGRVSMYAVRA 84 (412)
T ss_dssp CCEEEEEEEEEBTTB-SSHHHHHHHHHHTCCCCEECGGGGGSSSCCCCEEBCCSCCCCCTTSCHHHHTTCCHHHHHHHHH
T ss_pred CEEEEEeeEEECCCc-CCHHHHHHHHHcCCCceeeCCccccccCCccceeeecCCCChhhhCCHHHHhhCCHHHHHHHHH
Confidence 569999999999986 4777766552 32210 000 0 11111000 100 012356899999
Q ss_pred HHHHHHHcCC-CcCCcC----EEEEEeccCC--------------------------CCCCcHHHHHHHHhcccCCCCee
Q 012253 65 VTSLLEKYKI-DPTQIG----RLEVGSETVI--------------------------DKSKSIKTFLMQIFEKYGNTDIE 113 (467)
Q Consensus 65 a~~aL~~agi-~~~~Id----~Li~~Tes~~--------------------------~~~ps~a~~v~~~Lgl~G~~~~~ 113 (467)
+++||+++|+ ++++|| .++++|.++. ...+.++..|+..||+.| .
T Consensus 85 a~~Al~dAGl~~~~~i~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lgl~g----p 160 (412)
T 4ewg_A 85 SELALADAGFAGDESISDGRMGVAYGSSSGSVEPIRAFGTMLESGSMTDVTSNSYVQMMPHTTAVNVSLFWDLKG----R 160 (412)
T ss_dssp HHHHHHHHTCTTCGGGGTTTEEEEEECSCCCHHHHHHHHHHHHHCCCTTCCTTHHHHHSTTHHHHHHHHHTTCCS----C
T ss_pred HHHHHHhcCCCCccccCccceEEEEeccCCchHHHHHHHHHHHhcCcccCChhhhhhhcccHHHHHHHHHhCCCC----C
Confidence 9999999999 788888 8888887632 113457889999999822 5
Q ss_pred EEeeCCcChHHHHHHHHHHHHHHhCCCCCCEEEEEEeeccc------cc------C-----------CC---CCCccccc
Q 012253 114 GVDSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDSAV------YA------E-----------GP---ARPTGGAA 167 (467)
Q Consensus 114 ~~di~~aC~gg~~AL~~A~~~l~a~~~~~~~aLVV~sD~~~------y~------~-----------~~---~~~t~GdG 167 (467)
++.+..+|++++.||..|..+|++|.. +.|||+++|... |. . .+ +-...|||
T Consensus 161 ~~~v~~aCsS~l~Al~~A~~~I~~G~~--d~~LvgG~e~~s~~~~~~~~~~~~l~~~~~~p~~~~rpfd~~~~G~~~geG 238 (412)
T 4ewg_A 161 IVPTSSACASGSQAIGYAYENIAMGKQ--TLMLAGGAEELSGPAVAVFDTLYATSTRNDEPHLTPRPFDAKRDGLVVGEG 238 (412)
T ss_dssp EEECCCGGGHHHHHHHHHHHHHHTTSC--SEEEEEEEECCCHHHHHHHHTTTCBCCCTTCGGGCCCTTBTTCCCBCBBCE
T ss_pred cccccchhHHHHHHHHHHHHHHHcCCC--CEEEEeccccCCHHHHHHHHHhhccccCCCCCCCCCCCCCCCCCCCceECe
Confidence 889999999999999999999999977 999999999751 00 0 01 12356999
Q ss_pred eeEEEecCCCC-----ceeeccccccccc-CcccccccCCCCCCceecCcchHHHHHHHHHHHHHHHHHHHHhhhcCCCC
Q 012253 168 AVAMLIGPDAP-----IAFESKLRGSHMS-HAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKYFCQKFEKLEGRQFS 241 (467)
Q Consensus 168 AvA~Ll~~~~~-----~~~~~~~~~~~~~-~~~df~~p~~~~~~~~vdG~~s~~~y~~a~~~~~~~~~~~~~~~~~~~~~ 241 (467)
|+|+||++.+. ..+...+.++... +...+..|. + .....+.+..+ ++++++
T Consensus 239 AaavvL~~~~~A~~~g~~i~a~i~g~~~~~dg~~~~~p~---------~--------~~~~~ai~~Al------~~Agl~ 295 (412)
T 4ewg_A 239 AATLVLEEYEHAKARGATIHAEIVGFGCNSDGAHMTQPT---------A--------STMARAMQLAL------EDAKLD 295 (412)
T ss_dssp EEEEEEEEHHHHHHTTCCCCEEEEEEEEEECSSCSSSCC---------H--------HHHHHHHHHHH------HHTTCC
T ss_pred EEEEEEccHHHHhhCCCcEEEEEEEEEEcCCCCCCCCCC---------H--------HHHHHHHHHHH------HHcCCC
Confidence 99999986321 0000001222211 111222221 1 11222333332 345799
Q ss_pred ccccceeccCCchHHHHHHH
Q 012253 242 MLDVDYFVFHSPYNKLVQKS 261 (467)
Q Consensus 242 ~~d~d~~i~H~p~~k~~~k~ 261 (467)
++|||++..|...+.+.+..
T Consensus 296 ~~dId~ve~Hgtgt~~~D~~ 315 (412)
T 4ewg_A 296 ANAIAYVNAHGTSTDRGDVA 315 (412)
T ss_dssp GGGEEEEECCCCCCHHHHHH
T ss_pred HHHCCEEEccCCCCccccHH
Confidence 99999999999888866543
|
| >2iwz_A 3-oxoacyl-[acyl-carrier-protein] synthase; mitochondria, mitochondrion, lipid synthesis, fatty acid SYN fatty acid biosynthesis; 1.65A {Homo sapiens} PDB: 2iwy_A 2c9h_A | Back alignment and structure |
|---|
Probab=99.51 E-value=1.3e-11 Score=128.13 Aligned_cols=224 Identities=13% Similarity=0.116 Sum_probs=142.1
Q ss_pred ceeEEeEEEEecCCceeehhHHhhhh--CCCc---------CeeE---Eeccce-----Eee---ccC-----CCCCHHH
Q 012253 7 KNVGILALDIYFPPTCVLQEALEVHD--GVSK---------GKYT---VGLGQD-----CMA---FCS-----EVEDVIS 59 (467)
Q Consensus 7 ~~vgI~ai~~y~P~~~v~~~el~~~~--g~~~---------~k~~---~Gig~r-----~~a---v~~-----~~Ed~~~ 59 (467)
+.|-|.++++.+|.- .+.+++.+.. |.+. ..+. .|.-.. .+- +.+ .-.....
T Consensus 21 ~~v~ItG~g~~~p~g-~~~~~~w~~l~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~~~~~~~~~~~~~d~~~~ 99 (438)
T 2iwz_A 21 RRVVITGIGLVTPLG-VGTHLVWDRLIGGESGIVSLVGEEYKSIPCSVAAYVPRGSDEGQFNEQNFVSKSDIKSMSSPTI 99 (438)
T ss_dssp CCEEEEEEEEEETTE-ESHHHHHHHHHTTCCCEEECCSGGGTTSSCCEEECCCBSSSTTSBCGGGTSCHHHHTTSCHHHH
T ss_pred CCEEEEeeeEECCCC-CCHHHHHHHHHcCCCccccCCchhcccCccceeeeeccccccccCChhhcCCHHHHHhcCHHHH
Confidence 469999999999976 6777765542 3211 0110 010000 000 000 0123578
Q ss_pred HHHHHHHHHHHHcCCCc-CCcC----EEEEEeccCCC-----------------C--------C-CcHHHHHHHHhcccC
Q 012253 60 MSLTVVTSLLEKYKIDP-TQIG----RLEVGSETVID-----------------K--------S-KSIKTFLMQIFEKYG 108 (467)
Q Consensus 60 ma~~Aa~~aL~~agi~~-~~Id----~Li~~Tes~~~-----------------~--------~-ps~a~~v~~~Lgl~G 108 (467)
|+++|+++||+++|+++ ++|| .|++||.++.. . . ..++.+|+..||+
T Consensus 100 l~l~aa~~AL~dAGl~~~~~i~~~~~gv~vg~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~ia~~lgl-- 177 (438)
T 2iwz_A 100 MAIGAAELAMKDSGWHPQSEADQVATGVAIGMGMIPLEVVSETALNFQTKGYNKVSPFFVPKILVNMAAGQVSIRYKL-- 177 (438)
T ss_dssp HHHHHHHHHHHHHTCCCCSHHHHHTEEEEEEESCCCHHHHHHHHHHHHHHCGGGSCTTHHHHTCTTHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHcCCCCcccccCcceEEEEecccCcHHHHHHHHHHHHhcCCcccChhhhhhhhhhHHHHHHHHHhCC--
Confidence 99999999999999998 8887 58888876542 1 1 2478899999998
Q ss_pred CCCeeEEeeCCcChHHHHHHHHHHHHHHhCCCCCCEEEEEEeecc--cc-----------c-----CC--------CCCC
Q 012253 109 NTDIEGVDSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDSA--VY-----------A-----EG--------PARP 162 (467)
Q Consensus 109 ~~~~~~~di~~aC~gg~~AL~~A~~~l~a~~~~~~~aLVV~sD~~--~y-----------~-----~~--------~~~~ 162 (467)
+. .++++.++|++++.||..|..+|++|.. +.|||+++|.. .+ . +. .+..
T Consensus 178 -~g-p~~~v~taCsS~l~Al~~A~~~I~~G~~--d~aLvgG~e~~~~p~~~~~~~~~~~ls~~~~p~~~~~pfd~~~~G~ 253 (438)
T 2iwz_A 178 -KG-PNHAVSTACTTGAHAVGDSFRFIAHGDA--DVMVAGGTDSCISPLSLAGFSRARALSTNSDPKLACRPFHPKRDGF 253 (438)
T ss_dssp -CS-CEECBCCGGGHHHHHHHHHHHHHHHTSC--SEEEEEEEECCCSHHHHHHHHHTTCBCCCSCTTTSCCTTCTTCCSB
T ss_pred -CC-ceeeecCchhHHHHHHHHHHHHHHcCCC--CEEEEEeeehhcCHHHHHHHHhcCCcCCCCCCCcccccCCCCCCCE
Confidence 22 5899999999999999999999999976 99999999963 10 0 00 1124
Q ss_pred ccccceeEEEecCCC-------C-ceeeccccccccc-CcccccccCCCCCCceecCcchHHHHHHHHHHHHHHHHHHHH
Q 012253 163 TGGAAAVAMLIGPDA-------P-IAFESKLRGSHMS-HAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKYFCQKFE 233 (467)
Q Consensus 163 t~GdGAvA~Ll~~~~-------~-~~~~~~~~~~~~~-~~~df~~p~~~~~~~~vdG~~s~~~y~~a~~~~~~~~~~~~~ 233 (467)
.+||||+|+||++.+ + ... +.++... +...+..|. .++. ....+.+..++
T Consensus 254 ~~geGAaavvL~~~~~A~~~g~~i~a~---I~g~~~~~d~~~~t~p~-------~~~~--------~~~~ai~~Al~--- 312 (438)
T 2iwz_A 254 VMGEGAAVLVLEEYEHAVQRRARIYAE---VLGYGLSGDAGHITAPD-------PEGE--------GALRCMAAALK--- 312 (438)
T ss_dssp CBBCEEEEEEEEEHHHHHHTTCCCCEE---EEEEEEEECCSCSSSCC-------TTCH--------HHHHHHHHHHH---
T ss_pred EeeceEEEEEeccHHHHHhCCCceEEE---EecceecCCCCCCCCCC-------CCHH--------HHHHHHHHHHH---
Confidence 679999999998632 1 111 1122111 111222332 1221 12223333332
Q ss_pred hhhcCCCCccccceeccCCchHHHHHHH
Q 012253 234 KLEGRQFSMLDVDYFVFHSPYNKLVQKS 261 (467)
Q Consensus 234 ~~~~~~~~~~d~d~~i~H~p~~k~~~k~ 261 (467)
.++++++|||++..|+.++.+.+.+
T Consensus 313 ---~Agl~p~dId~ve~HgtgT~~gD~~ 337 (438)
T 2iwz_A 313 ---DAGVQPEEISYINAHATSTPLGDAA 337 (438)
T ss_dssp ---HHTCCGGGCCEEECCCCSCHHHHHH
T ss_pred ---HcCCCHHHcCEEEecCCCCcccCHH
Confidence 3469999999999999998875543
|
| >3kzu_A 3-oxoacyl-(acyl-carrier-protein) synthase II; seattle structural genomics center for infectious disease, ssgcid, acyltransferase; 1.75A {Brucella melitensis} PDB: 3e60_A | Back alignment and structure |
|---|
Probab=99.49 E-value=3.6e-12 Score=132.09 Aligned_cols=164 Identities=15% Similarity=0.082 Sum_probs=113.5
Q ss_pred CceeEEeEEEEecCCceeehhHHhhhh--CCC---------cCeeEEeccce-Ee------ecc-----C-----CCCCH
Q 012253 6 PKNVGILALDIYFPPTCVLQEALEVHD--GVS---------KGKYTVGLGQD-CM------AFC-----S-----EVEDV 57 (467)
Q Consensus 6 ~~~vgI~ai~~y~P~~~v~~~el~~~~--g~~---------~~k~~~Gig~r-~~------av~-----~-----~~Ed~ 57 (467)
...|-|.++|+..|-- .+.+++.+.. |.+ .+.+...++-+ .. .+. + .-...
T Consensus 9 ~~~~viTG~G~vsp~g-~~~~~~w~~L~~G~s~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~~~~i~~~~~~~~d~~ 87 (428)
T 3kzu_A 9 MRRVVITGLGLVSPLA-SGVEETWKRLLAGESGARRVTEFEVDDLACQIACRIPVGDGTNGTFNPDLHMDPKEQRKVDPF 87 (428)
T ss_dssp CCCEEEEEEEEECSSC-BSHHHHHHHHHTTCCCEEECCSSCCTTSSCCEEECCCBSSSSTTCBCGGGTSCHHHHTTSCHH
T ss_pred ccceEEEeceEECCCc-CCHHHHHHHHHcCCCeeeeCCccccccCcCceeeEecccccccccCChhhcCCHHHHHhCCHH
Confidence 3568999999999987 5777765552 322 11110000000 00 000 0 01225
Q ss_pred HHHHHHHHHHHHHHcCCCcCC-cC----EEEEEeccC--------------------------CCCCCcHHHHHHHHhcc
Q 012253 58 ISMSLTVVTSLLEKYKIDPTQ-IG----RLEVGSETV--------------------------IDKSKSIKTFLMQIFEK 106 (467)
Q Consensus 58 ~~ma~~Aa~~aL~~agi~~~~-Id----~Li~~Tes~--------------------------~~~~ps~a~~v~~~Lgl 106 (467)
..|+++|+++||+++|+++++ || .++++|..+ ....+..+..|+..||+
T Consensus 88 ~~l~l~aa~~AL~dAGl~~~~~id~~~~gv~vg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~is~~lgl 167 (428)
T 3kzu_A 88 IVYAVGAADQALDDAGWHPENDEDQVRTGVLIGSGIGGIEGIVEAGYTLRDKGPRRISPFFIPGRLINLASGHVSIKHKL 167 (428)
T ss_dssp HHHHHHHHHHHHHHHTCCCCSHHHHHTEEEEEECSSCSHHHHHHHHHHHHHTCGGGSCTTTTTTTCTTHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhcCCChhhhccccceEEEEcccCCcchhHHHHHHHHHhcCccccCchhcccchhhhHHHHHHHHcCC
Confidence 789999999999999999998 87 577887532 23345678899999998
Q ss_pred cCCCCeeEEeeCCcChHHHHHHHHHHHHHHhCCCCCCEEEEEEeeccc-------------ccC---------------C
Q 012253 107 YGNTDIEGVDSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDSAV-------------YAE---------------G 158 (467)
Q Consensus 107 ~G~~~~~~~di~~aC~gg~~AL~~A~~~l~a~~~~~~~aLVV~sD~~~-------------y~~---------------~ 158 (467)
.| .++.+..+|++++.||..|..+|++|.. +.|||+++|... ... .
T Consensus 168 ~G----p~~~v~taCsS~l~Al~~A~~~I~~G~~--d~aLvgG~e~~~~~~~~~~~~~~~~ls~~~~~~~~~~~~pfd~~ 241 (428)
T 3kzu_A 168 RG----PNHSVVTACATGTHAIGDAARLIAFGDA--DVMVAGGTESPVSRISLAGFAACKALSTERNDDPTAASRPYDED 241 (428)
T ss_dssp CS----CEECBCCGGGHHHHHHHHHHHHHHTTSC--SEEEEEEEECCCSHHHHHHHHHTTCBCCSCTTSGGGTCCTTBTT
T ss_pred CC----ceeeecCccHHHHHHHHHHHHHHHCCCC--CEEEEeeecCcCCHHHHHHHHHccccccCccCCcccccCCcccC
Confidence 32 5888999999999999999999999976 999999999720 000 0
Q ss_pred CCCCccccceeEEEecCC
Q 012253 159 PARPTGGAAAVAMLIGPD 176 (467)
Q Consensus 159 ~~~~t~GdGAvA~Ll~~~ 176 (467)
.+....||||+|+||++.
T Consensus 242 ~~G~v~gdGAaavvL~~~ 259 (428)
T 3kzu_A 242 RDGFVMGEGAGIVVLEEL 259 (428)
T ss_dssp CCSBCBBCEEEEEEEEEH
T ss_pred CCceeecCceEEEEEccH
Confidence 112457999999999863
|
| >4ddo_A 3-oxoacyl-[acyl-carrier-protein] synthase 2; ssgcid, struct genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia vietnamiensis} PDB: 4f32_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=6.4e-12 Score=131.06 Aligned_cols=176 Identities=16% Similarity=0.094 Sum_probs=119.7
Q ss_pred CHHHHHHHHHHHHHHHcCCCcCCc-C----EEEEEeccCC--------------------------CCCCcHHHHHHHHh
Q 012253 56 DVISMSLTVVTSLLEKYKIDPTQI-G----RLEVGSETVI--------------------------DKSKSIKTFLMQIF 104 (467)
Q Consensus 56 d~~~ma~~Aa~~aL~~agi~~~~I-d----~Li~~Tes~~--------------------------~~~ps~a~~v~~~L 104 (467)
....|+++|+++||+++|+++++| | .++++|.++. ...+.++..|+..|
T Consensus 101 ~~~~L~l~Aa~~AL~dAGl~~~~i~d~~~~gv~vgt~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~l 180 (451)
T 4ddo_A 101 RFIQMAMVAADEALAEAGWAPEAEQQRERTATVVASGIGGFPGLAEAVRIGETRGVRRLSPFTIPFFLSNLAAGQISIKH 180 (451)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCCSHHHHTTEEEEEECSSCSHHHHHHHHHHHHHTCGGGCCTTHHHHHCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCChhhcccccceEEEEeecCCchHHHHHHHHHHHhcCccccCcchhhccccchHHHHHHHHh
Confidence 357899999999999999999999 7 6888886431 12345788999999
Q ss_pred cccCCCCeeEEeeCCcChHHHHHHHHHHHHHHhCCCCCCEEEEEEeeccc----------------------------cc
Q 012253 105 EKYGNTDIEGVDSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDSAV----------------------------YA 156 (467)
Q Consensus 105 gl~G~~~~~~~di~~aC~gg~~AL~~A~~~l~a~~~~~~~aLVV~sD~~~----------------------------y~ 156 (467)
|+.| .++++..+|++++.||..|..+|++|.+ +.|||+++|... |.
T Consensus 181 gl~G----p~~~v~~aCsS~l~Al~~A~~~I~~G~~--d~vLvgG~e~~~~~~~~~~~~~~~~ls~~~~~~~~~~~~pfd 254 (451)
T 4ddo_A 181 RFRG----PLGCPVTACAASVQAIGDAMRMIRTGEA--DVVLAGGAEAAFDKVSLGGFAAARALSTGFSEEPVRASRPFD 254 (451)
T ss_dssp TCCS----CEECCCCGGGHHHHHHHHHHHHHHHTSC--SEEEEEEEECCCSHHHHHHHHHTTCBCCSCTTSGGGSCCTTB
T ss_pred cCCC----ceeeecCccHHHHHHHHHHHHHHHCCCC--CEEEEeccccccCHHHHHHHHHHhhhccCCCcCccccccccc
Confidence 9822 5889999999999999999999999977 999999999841 00
Q ss_pred CCCCCCccccceeEEEecCCC--------Cceeeccccccccc-CcccccccCCCCCCceecCcchHHHHHHHHHHHHHH
Q 012253 157 EGPARPTGGAAAVAMLIGPDA--------PIAFESKLRGSHMS-HAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKY 227 (467)
Q Consensus 157 ~~~~~~t~GdGAvA~Ll~~~~--------~~~~~~~~~~~~~~-~~~df~~p~~~~~~~~vdG~~s~~~y~~a~~~~~~~ 227 (467)
...+....||||+|+||.+.+ ++.. +.++... +......| ..++. ....+.+.
T Consensus 255 ~~~~g~v~gdGAaavvL~~~~~A~~~g~~i~a~---i~g~~~~~d~~~~~~~-------~~~~~--------~~~~ai~~ 316 (451)
T 4ddo_A 255 RDRDGFVMGEGAAMVVVESLDHALARGARPIAE---IIGYGTTADAYHMTAG-------PDDGS--------GAMRAMKL 316 (451)
T ss_dssp TTCCSBCBBCEEEEEEEEEHHHHHHTTCCCSEE---EEEEEEEECCSCSSCC-------CTTCH--------HHHHHHHH
T ss_pred cCCCCcEEeceEEEEEEeeHHHHHhCCCceEEE---EEEEEEecCCCccCCC-------CCCHH--------HHHHHHHH
Confidence 011224579999999998632 1111 1222211 11111122 11221 11222233
Q ss_pred HHHHHHhhhcCCCCccccceeccCCchHHHHHHH
Q 012253 228 FCQKFEKLEGRQFSMLDVDYFVFHSPYNKLVQKS 261 (467)
Q Consensus 228 ~~~~~~~~~~~~~~~~d~d~~i~H~p~~k~~~k~ 261 (467)
.++ .++++++|||++..|..+..+.+..
T Consensus 317 al~------~Agl~~~dId~ve~Hgtgt~~~d~~ 344 (451)
T 4ddo_A 317 ALR------MGDVAPEQVDYVNAHATSTPVGDAG 344 (451)
T ss_dssp HHH------HHTCCGGGCCEEECCCCSCHHHHHH
T ss_pred HHH------HcCCCHHHcCEEEecCCcCcccCHH
Confidence 333 3479999999999998888766544
|
| >1afw_A 3-ketoacetyl-COA thiolase; fatty acid metabolism; 1.80A {Saccharomyces cerevisiae} SCOP: c.95.1.1 c.95.1.1 PDB: 1pxt_A | Back alignment and structure |
|---|
Probab=99.49 E-value=8.7e-13 Score=135.21 Aligned_cols=97 Identities=11% Similarity=0.115 Sum_probs=88.8
Q ss_pred CCCCHHHHHHHHHHHHHHHcC----CCcCCcCEEEEEeccCCCCCCcHHHHHHHHhcccCCCCeeEEeeCCcChHHHHHH
Q 012253 53 EVEDVISMSLTVVTSLLEKYK----IDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAAL 128 (467)
Q Consensus 53 ~~Ed~~~ma~~Aa~~aL~~ag----i~~~~Id~Li~~Tes~~~~~ps~a~~v~~~Lgl~G~~~~~~~di~~aC~gg~~AL 128 (467)
.++++.+|+++|++++|+++| +++++||.|+++|.++....+.++.+|+..||+ +.+..++++..+|++++.||
T Consensus 31 ~~~~~~~La~~Aa~~Al~~Ag~~~~l~~~~id~v~~g~~~~~~~~~~~a~~va~~lGl--~~~~p~~~v~~aCasg~~Al 108 (393)
T 1afw_A 31 KDVNTDYLLYNFLNEFIGRFPEPLRADLNLIEEVACGNVLNVGAGATEHRAACLASGI--PYSTPFVALNRQCSSGLTAV 108 (393)
T ss_dssp TTCCHHHHHHHHHHHHHHTSCHHHHTCGGGCCCEEEECSSSBGGGHHHHHHHHHHTTC--CTTSCEEEEECGGGHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHhCCCCCCCCHHHCCEEEEEecCCCCCCChHHHHHHHHcCC--CCCceEEEEcCcCHHHHHHH
Confidence 478899999999999999999 999999999999988876667889999999998 45788999999999999999
Q ss_pred HHHHHHHHhCCCCCCEEEEEEeecc
Q 012253 129 FNCVNWVESASWDGRYGLVVCTDSA 153 (467)
Q Consensus 129 ~~A~~~l~a~~~~~~~aLVV~sD~~ 153 (467)
..|..+|++|.. +.+||+++|..
T Consensus 109 ~~A~~~I~~G~~--d~vLv~G~e~~ 131 (393)
T 1afw_A 109 NDIANKIKVGQI--DIGLALGVESM 131 (393)
T ss_dssp HHHHHHHHTTSC--SEEEEEEEEEH
T ss_pred HHHHHHHHCCCC--CEEEEEEEEec
Confidence 999999999976 99999999963
|
| >2wu9_A 3-ketoacyl-COA thiolase 2, peroxisomal; cysteine oxidation, fatty acid metabolism, oxylipin biosynthesis, plant lipid metabolism; 1.50A {Arabidopsis thaliana} PDB: 2c7y_A 2c7z_A 2wua_A | Back alignment and structure |
|---|
Probab=99.48 E-value=6.6e-13 Score=137.95 Aligned_cols=97 Identities=14% Similarity=0.179 Sum_probs=86.7
Q ss_pred CCCCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEeccCCCC-CCcHHHHHHHHhcccCCCCeeEEeeCCcChHHHHHHHHH
Q 012253 53 EVEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDK-SKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAALFNC 131 (467)
Q Consensus 53 ~~Ed~~~ma~~Aa~~aL~~agi~~~~Id~Li~~Tes~~~~-~ps~a~~v~~~Lgl~G~~~~~~~di~~aC~gg~~AL~~A 131 (467)
.+++..+|+++|++++|+++|+++++||.|++++.++... .+.++..|+..||+ +....++++..+|++++.||..|
T Consensus 51 ~~~~~~~La~~Aa~~AL~dAGl~~~~Id~vi~g~~~~~~~~~~~~a~~va~~lGl--~~~~p~~~v~~aCaSg~~Al~~A 128 (442)
T 2wu9_A 51 KDTYPDDLLAPVLRALIEKTNLNPSEVGDIVVGTVLAPGSQRASECRMAAFYAGF--PETVAVRTVNRQCSSGLQAVADV 128 (442)
T ss_dssp TTCCHHHHHHHHHHHHHHHHTCCGGGCCCEEEECCSSBHHHHHHHHHHHHHHTTC--CTTSCEEEEECGGGHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEEeecCccCCCChHHHHHHHHcCC--CCCceEEEeCCcCHHHHHHHHHH
Confidence 3688999999999999999999999999999998876532 35678899999998 45788999999999999999999
Q ss_pred HHHHHhCCCCCCEEEEEEeecc
Q 012253 132 VNWVESASWDGRYGLVVCTDSA 153 (467)
Q Consensus 132 ~~~l~a~~~~~~~aLVV~sD~~ 153 (467)
..+|++|.. +.|||+++|..
T Consensus 129 ~~~I~sG~~--d~vLvgG~e~~ 148 (442)
T 2wu9_A 129 AAAIKAGFY--DIGIGAGLESM 148 (442)
T ss_dssp HHHHHTTSC--SEEEEEEEEET
T ss_pred HHHHHCCCC--CEEEEEEEeec
Confidence 999999976 99999999864
|
| >1wdk_C 3-ketoacyl-COA thiolase; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: c.95.1.1 c.95.1.1 PDB: 1wdl_C* 1wdm_C* 2d3t_C* | Back alignment and structure |
|---|
Probab=99.48 E-value=5.2e-12 Score=129.29 Aligned_cols=96 Identities=14% Similarity=0.134 Sum_probs=87.3
Q ss_pred CCCHHHHHHHHHHHHHHHc-CCCcCCcCEEEEEeccCCCC-CCcHHHHHHHHhcccCCCCeeEEeeCCcChHHHHHHHHH
Q 012253 54 VEDVISMSLTVVTSLLEKY-KIDPTQIGRLEVGSETVIDK-SKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAALFNC 131 (467)
Q Consensus 54 ~Ed~~~ma~~Aa~~aL~~a-gi~~~~Id~Li~~Tes~~~~-~ps~a~~v~~~Lgl~G~~~~~~~di~~aC~gg~~AL~~A 131 (467)
+++..+|+++|++++|+++ |+++++||.+++++.++... .+.++.+|+..||+ +++..++++..+|++++.||..|
T Consensus 27 ~~~~~~L~~~a~~~AL~dA~gl~~~~id~v~~g~~~~~~~~~~~~a~~ia~~lgl--~~~~p~~~v~~aCaS~~~Al~~A 104 (390)
T 1wdk_C 27 NTRAEDMSAHLISKVLERNSKVDPGEVEDVIWGCVNQTLEQGWNIARMASLMTQI--PHTSAAQTVSRLCGSSMSALHTA 104 (390)
T ss_dssp TCCHHHHHHHHHHHHHHHCTTSCGGGEEEEEEECSSBSBTTTTTHHHHHHTTSSS--CTTSEEEEEECGGGHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhccCCCHHHCCEEEEEeeccccCCCCcHHHHHHHHcCC--CCCccEEEEcccchhHHHHHHHH
Confidence 6789999999999999999 99999999999999877654 36789999999998 56788999999999999999999
Q ss_pred HHHHHhCCCCCCEEEEEEeecc
Q 012253 132 VNWVESASWDGRYGLVVCTDSA 153 (467)
Q Consensus 132 ~~~l~a~~~~~~~aLVV~sD~~ 153 (467)
..+|++|.. +.+||+++|..
T Consensus 105 ~~~I~~G~~--d~vlvgG~e~~ 124 (390)
T 1wdk_C 105 AQAIMTGNG--DVFVVGGVEHM 124 (390)
T ss_dssp HHHHHTTSC--SEEEEEEEEET
T ss_pred HHHHHcCCC--CEEEEeeeecc
Confidence 999999976 99999999964
|
| >2ix4_A 3-oxoacyl-[acyl-carrier-protein] synthase; beta-ketoacyl-(acyl carrier protein) synthase, lipid metabol condensing enzyme; 1.95A {Arabidopsis thaliana} SCOP: c.95.1.1 c.95.1.1 PDB: 1w0i_A | Back alignment and structure |
|---|
Probab=99.48 E-value=4.6e-12 Score=131.39 Aligned_cols=178 Identities=13% Similarity=0.118 Sum_probs=118.6
Q ss_pred HHHHHHHHHHHHHHHcCC-CcCCcC----EEEEEeccCC-----------------CCC---------CcHHHHHHHHhc
Q 012253 57 VISMSLTVVTSLLEKYKI-DPTQIG----RLEVGSETVI-----------------DKS---------KSIKTFLMQIFE 105 (467)
Q Consensus 57 ~~~ma~~Aa~~aL~~agi-~~~~Id----~Li~~Tes~~-----------------~~~---------ps~a~~v~~~Lg 105 (467)
...|+++|+++||+++|+ ++++|| .|+++|.++. ... ..++.+|+..||
T Consensus 88 ~~~l~l~aa~~AL~dAG~~~~~~i~~~~~gv~vg~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~ia~~lg 167 (431)
T 2ix4_A 88 FIGYAVCAADEALRDAEWLPTEEEEKERTGVSIGGGIGSICDIVEAAQLICEKRLRRLSPFFIPKILVNMASGHVSMKYG 167 (431)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCSHHHHHTEEEEEEESSCCHHHHHHHHHHHHTTCGGGCCTTHHHHHCTTHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCCCCccccCCCCEEEEEeeccccHHHHHHHHHHHHhcCcccCChhhhhcchhHHHHHHHHHHHC
Confidence 468999999999999999 988888 5888876542 111 247889999999
Q ss_pred ccCCCCeeEEeeCCcChHHHHHHHHHHHHHHhCCCCCCEEEEEEeeccc-----------------cc-----------C
Q 012253 106 KYGNTDIEGVDSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDSAV-----------------YA-----------E 157 (467)
Q Consensus 106 l~G~~~~~~~di~~aC~gg~~AL~~A~~~l~a~~~~~~~aLVV~sD~~~-----------------y~-----------~ 157 (467)
+.| .++++.+||++++.||..|..+|++|.. +.|||+++|... |. .
T Consensus 168 l~g----p~~~v~taCsS~l~Al~~A~~~I~~G~~--d~aLvgG~e~~~~~~~~~~~~~~~~ls~~~~~~~~~~~~pfd~ 241 (431)
T 2ix4_A 168 FQG----PNHAAVTACATGAHSIGDATRMIQFGDA--DVMVAGGTESSIDALSVAGFSRSRALSTKFNSSPQEASRPFDC 241 (431)
T ss_dssp CCS----CEECBCCGGGHHHHHHHHHHHHHHHTSC--SEEEEEEEECCCSHHHHHHHHHTTCBCCTTTTCGGGSCCTTBT
T ss_pred CCC----ceeCccChhHHHHHHHHHHHHHHHcCCC--CEEEEeeeccccCHHHHHHHHhccccCccccCCcccccccCCC
Confidence 822 5899999999999999999999999976 999999999641 00 0
Q ss_pred CCCCCccccceeEEEecCCCC-----ceeeccccccccc-CcccccccCCCCCCceecCcchHHHHHHHHHHHHHHHHHH
Q 012253 158 GPARPTGGAAAVAMLIGPDAP-----IAFESKLRGSHMS-HAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKYFCQK 231 (467)
Q Consensus 158 ~~~~~t~GdGAvA~Ll~~~~~-----~~~~~~~~~~~~~-~~~df~~p~~~~~~~~vdG~~s~~~y~~a~~~~~~~~~~~ 231 (467)
..+...+||||+|+||++.+. ..+...+.++... +...+..|. .++. ....+.+..++
T Consensus 242 ~~~g~~~gdGAaavvL~~~~~A~~~g~~i~a~i~g~~~~~dg~~~~~p~-------~~~~--------~~~~ai~~al~- 305 (431)
T 2ix4_A 242 DRDGFVIGEGSGVIVLEEYEHAKRRGAKIYAELCGYGMSGDAHHITQPP-------EDGK--------GAVLAMTRALR- 305 (431)
T ss_dssp TCCSBCBBCEEEEEEEEEHHHHHHTTCCCCEEEEEEEEEECCSCSSCCC-------TTCH--------HHHHHHHHHHH-
T ss_pred CCCCceeecceEEEEEccHHHHHhCCCceEEEEeeeeecCCCCCCCCCC-------CCHH--------HHHHHHHHHHH-
Confidence 012246799999999986421 0000001121111 111122232 1221 12223333333
Q ss_pred HHhhhcCCCCccccceeccCCchHHHHHHH
Q 012253 232 FEKLEGRQFSMLDVDYFVFHSPYNKLVQKS 261 (467)
Q Consensus 232 ~~~~~~~~~~~~d~d~~i~H~p~~k~~~k~ 261 (467)
+++++++|||++..|..++.+.+..
T Consensus 306 -----~agl~~~dId~ve~HgtgT~~~D~~ 330 (431)
T 2ix4_A 306 -----QSGLCPNQIDYVNAHATSTPIGDAV 330 (431)
T ss_dssp -----HHTCCGGGCCEEECCCCSCHHHHHH
T ss_pred -----HcCCCHHHcCEEEEeCCcCcccCHH
Confidence 3469999999999999888765543
|
| >1tqy_B Actinorhodin polyketide putative beta-ketoacyl SY; alpha-beta-alpha-beta-alpha, heterodimer, transferase; 2.00A {Streptomyces coelicolor} SCOP: c.95.1.1 c.95.1.1 | Back alignment and structure |
|---|
Probab=99.47 E-value=6.6e-12 Score=129.54 Aligned_cols=220 Identities=15% Similarity=0.035 Sum_probs=142.3
Q ss_pred ceeEEeEEEEecCCceeehhHHhhhh--CCC---------cCeeEEec-c-ceEe---eccCCC-----CCHHHHHHHHH
Q 012253 7 KNVGILALDIYFPPTCVLQEALEVHD--GVS---------KGKYTVGL-G-QDCM---AFCSEV-----EDVISMSLTVV 65 (467)
Q Consensus 7 ~~vgI~ai~~y~P~~~v~~~el~~~~--g~~---------~~k~~~Gi-g-~r~~---av~~~~-----Ed~~~ma~~Aa 65 (467)
..|-|.++++.+|.-. +.+++.+.. |.+ ...|...+ + ...+ .+.++. .....|+++|+
T Consensus 9 ~~v~I~G~g~~~p~g~-~~~~~w~~l~~g~~~i~~~~~~~~~~~~~~~~~~v~~fd~~~~~~~~~~~~~d~~~~l~l~aa 87 (415)
T 1tqy_B 9 KSVLITGVGVVAPNGL-GLAPYWSAVLDGRHGLGPVTRFDVSRYPATLAGQIDDFHAPDHIPGRLLPQTDPSTRLALTAA 87 (415)
T ss_dssp -CEEEEEEEEEETTEE-SHHHHHHHHHTTCCCEEECTTTTGGGSSCCEEECCCSCCHHHHSCTTTGGGCCHHHHHHHHHH
T ss_pred CCEEEEeeEEECCCCC-CHHHHHHHHHcCCCcEEECCcccccCCCcceEEEeCCCCchhcCCHHHHHhcCHHHHHHHHHH
Confidence 5699999999999874 777765542 321 11110000 0 0000 001111 12578999999
Q ss_pred HHHHHHcCCCcCCcC----EEEEEeccCCC--------------------------CCCcHHHHHHHHhcccCCCCeeEE
Q 012253 66 TSLLEKYKIDPTQIG----RLEVGSETVID--------------------------KSKSIKTFLMQIFEKYGNTDIEGV 115 (467)
Q Consensus 66 ~~aL~~agi~~~~Id----~Li~~Tes~~~--------------------------~~ps~a~~v~~~Lgl~G~~~~~~~ 115 (467)
+++|+++|+++++|| .|+++|.++.. ..+.++.+|+..||+.| .++
T Consensus 88 ~~AL~dAGl~~~~id~~~~gv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lgl~g----p~~ 163 (415)
T 1tqy_B 88 DWALQDAKADPESLTDYDMGVVTANACGGFDFTHREFRKLWSEGPKSVSVYESFAWFYAVNTGQISIRHGMRG----PSS 163 (415)
T ss_dssp HHHHHHTTCCGGGSCGGGEEEEEECSSCSHHHHHHHHHHHHHTCGGGSCTTHHHHSSTTHHHHHHHHHHTCCS----SCE
T ss_pred HHHHHHcCCCccccCCCCEEEEEeeCCccHHHHHHHHHHHHhcCcccCChhhhhcccchHHHHHHHHHhCCCC----ceE
Confidence 999999999999999 89999876532 23568899999999832 488
Q ss_pred eeCCcChHHHHHHHHHHHHHHhCCCCCCEEEEEEeecc--c-----------cc-----C-----CC---CCCcccccee
Q 012253 116 DSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDSA--V-----------YA-----E-----GP---ARPTGGAAAV 169 (467)
Q Consensus 116 di~~aC~gg~~AL~~A~~~l~a~~~~~~~aLVV~sD~~--~-----------y~-----~-----~~---~~~t~GdGAv 169 (467)
.+..+|++++.||..|..+|++| . +.|||+++|.. . .. + .+ +....||||+
T Consensus 164 ~v~~aCsS~l~Al~~A~~~I~~G-~--d~~LvgG~e~~~~~~~~~~~~~~~~ls~~~~~~~~~~pfd~~~~G~~~geGaa 240 (415)
T 1tqy_B 164 ALVAEQAGGLDALGHARRTIRRG-T--PLVVSGGVDSALDPWGWVSQIASGRISTATDPDRAYLPFDERAAGYVPGEGGA 240 (415)
T ss_dssp EEECGGGHHHHHHHHHHHHHHHT-C--SEEEEEEEECCCSHHHHHHHHTTSCBCCCSCGGGSCCTTSTTCCCBCBBCEEE
T ss_pred eecCCccHHHHHHHHHHHHHHcC-C--CEEEEeeecCcCCHHHHHHHHhccCccCCCCCCCCcCCCCCCCCCcceeeeEE
Confidence 88999999999999999999999 9 99999999983 0 00 0 01 1246799999
Q ss_pred EEEecCCC--------C-ceeeccccccccc-CcccccccCCCCCCceecCcchHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 012253 170 AMLIGPDA--------P-IAFESKLRGSHMS-HAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKYFCQKFEKLEGRQ 239 (467)
Q Consensus 170 A~Ll~~~~--------~-~~~~~~~~~~~~~-~~~df~~p~~~~~~~~vdG~~s~~~y~~a~~~~~~~~~~~~~~~~~~~ 239 (467)
|+||++.+ + ... +.++... +...+..|. . + -.++++.+ ++ +++
T Consensus 241 avvL~~~~~A~~~g~~~i~a~---I~g~~~~~dg~~~~~p~-------~-~------~~~ai~~a----l~------~Ag 293 (415)
T 1tqy_B 241 ILVLEDSAAAEARGRHDAYGE---LAGCASTFDPAPGSGRP-------A-G------LERAIRLA----LN------DAG 293 (415)
T ss_dssp EEEEEEHHHHHHHTCCCCSEE---EEEEEEEECCCTTCCCC-------C-S------HHHHHHHH----HH------HHT
T ss_pred EEEECcHHHHHHCCCCceEEE---EEEEEEccCCCCCCCCC-------H-H------HHHHHHHH----HH------HcC
Confidence 99998642 1 111 1121111 112223332 1 2 12333332 22 236
Q ss_pred CCccccceeccCCchHHHHHHH
Q 012253 240 FSMLDVDYFVFHSPYNKLVQKS 261 (467)
Q Consensus 240 ~~~~d~d~~i~H~p~~k~~~k~ 261 (467)
++++|||++..|..++++.+.+
T Consensus 294 l~~~dId~ve~Hgtgt~~~D~~ 315 (415)
T 1tqy_B 294 TGPEDVDVVFADGAGVPELDAA 315 (415)
T ss_dssp CCGGGCCEEECCCCCSHHHHHH
T ss_pred CCHhHCCEEEEeCCCCcCcCHH
Confidence 9999999999999888766543
|
| >2gp6_A 3-oxoacyl-[acyl-carrier-protein] synthase 2; thiolase fold, structural genomics, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.45 E-value=1.5e-10 Score=120.14 Aligned_cols=162 Identities=11% Similarity=-0.021 Sum_probs=111.2
Q ss_pred ceeEEeEEEEecCCceeehhHHhhhh--CCCc----CeeE---EeccceEeeccCCC-------------CCHHHHHHHH
Q 012253 7 KNVGILALDIYFPPTCVLQEALEVHD--GVSK----GKYT---VGLGQDCMAFCSEV-------------EDVISMSLTV 64 (467)
Q Consensus 7 ~~vgI~ai~~y~P~~~v~~~el~~~~--g~~~----~k~~---~Gig~r~~av~~~~-------------Ed~~~ma~~A 64 (467)
+.|-|.++++.+|--. +.+++.+.. |.+. .++. .++-.+.-.+.+++ .....|+++|
T Consensus 28 ~~vaI~G~g~~~p~g~-~~~~~w~~l~~g~~~i~~~~~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~d~~~~l~l~a 106 (434)
T 2gp6_A 28 PYVVVTGIAMTTALAT-DAETTWKLLLDRQSGIRTLDDPFVEEFDLPVRIGGHLLEEFDHQLTRIELRRMGYLQRMSTVL 106 (434)
T ss_dssp CCEEEEEEEEECSSCS-SHHHHHHHHHTTCCCEEECCCHHHHHHCCSCCEEECCSCCSTTSSCHHHHHTCCHHHHHHHHH
T ss_pred CCEEEEeeEEeCCCCC-CHHHHHHHHHcCCCeeeeCCccccccccCccceeEEcCCchhhhCCHHHHHhCCHHHHHHHHH
Confidence 4699999999999874 777766552 3221 0010 01111111111111 1247899999
Q ss_pred HHHHHHHcCCC---cCCcCEEEEEeccCCC-----------------CCC---------cHHHHHHHHhcccCCCCeeEE
Q 012253 65 VTSLLEKYKID---PTQIGRLEVGSETVID-----------------KSK---------SIKTFLMQIFEKYGNTDIEGV 115 (467)
Q Consensus 65 a~~aL~~agi~---~~~Id~Li~~Tes~~~-----------------~~p---------s~a~~v~~~Lgl~G~~~~~~~ 115 (467)
++++|+++|++ +++|+ |+++|.++.+ ..| .++.+|+..||+ + ..++
T Consensus 107 a~~ALedAG~~~~~~~~ig-v~vgt~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~is~~lgl---~-Gp~~ 181 (434)
T 2gp6_A 107 SRRLWENAGSPEVDTNRLM-VSIGTGLGSAEELVFSYDDMRARGMKAVSPLTVQKYMPNGAAAAVGLERHA---K-AGVM 181 (434)
T ss_dssp HHHHHHHTTCCCCCTTSEE-EEEECSSCSCHHHHHHHHHHTTSCSSSSCTTHHHHHSTTHHHHHHHHHSCC---C-SCEE
T ss_pred HHHHHHhcCCCccCCCceE-EEEccccccHHHHHHHHHHHHhcCccccChhhhhccchhhHHHHHhhhhcC---C-CCeE
Confidence 99999999984 55565 6777776543 111 468899999998 2 3588
Q ss_pred eeCCcChHHHHHHHHHHHHHHhCCCCCCEEEEEEeecc-c------------ccC-----C----------CCCCccccc
Q 012253 116 DSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDSA-V------------YAE-----G----------PARPTGGAA 167 (467)
Q Consensus 116 di~~aC~gg~~AL~~A~~~l~a~~~~~~~aLVV~sD~~-~------------y~~-----~----------~~~~t~GdG 167 (467)
++.++|++++.||..|..+|++|.. +.|||+++|.. . ... . .+...+|||
T Consensus 182 ~v~~aCsS~l~Al~~A~~~I~~G~~--d~aLvgG~e~~~~~~~~~~~~~~~~~ls~~~~~p~~~~~pfd~~~~g~v~gdG 259 (434)
T 2gp6_A 182 TPVSACASGAEAIARAWQQIVLGEA--DAAICGGVETRIEAVPIAGFAQMRIVMSTNNDDPAGACRPFDRDRDGFVFGEG 259 (434)
T ss_dssp CEECGGGHHHHHHHHHHHHHHHTSC--SEEEEEEECCCCCHHHHHHHHTTTSSCCCCTTCTTTSCCSSBTTCCCCCBBCC
T ss_pred EeCCCCcHHHHHHHHHHHHHHcCCC--CEEEEeeeccccCHHHHHHHHHHHHHhcCCCCCCCCceecccccCCCcceecc
Confidence 9999999999999999999999976 99999999974 1 111 0 112457999
Q ss_pred eeEEEecCC
Q 012253 168 AVAMLIGPD 176 (467)
Q Consensus 168 AvA~Ll~~~ 176 (467)
|+|+||++.
T Consensus 260 AaavvL~~~ 268 (434)
T 2gp6_A 260 GALLLIETE 268 (434)
T ss_dssp EEEEEEEEH
T ss_pred eEEEEeCcH
Confidence 999999764
|
| >3mqd_A Beta-ketoacyl synthase; ssgcid, ALS collaborative crystallography, beta-ketoacyl SYN brucella melitensis, fragments of LIFE; HET: 3MQ; 1.25A {Brucella melitensis biovar abortus} PDB: 3lrf_A* 3u0e_A* 3u0f_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=9e-12 Score=129.06 Aligned_cols=163 Identities=9% Similarity=0.040 Sum_probs=116.0
Q ss_pred ceeEEeEEEEecCCceeehhHHhhhh--CCCc-Cee----EEeccceEee---------c----cCCCCCHHHHHHHHHH
Q 012253 7 KNVGILALDIYFPPTCVLQEALEVHD--GVSK-GKY----TVGLGQDCMA---------F----CSEVEDVISMSLTVVT 66 (467)
Q Consensus 7 ~~vgI~ai~~y~P~~~v~~~el~~~~--g~~~-~k~----~~Gig~r~~a---------v----~~~~Ed~~~ma~~Aa~ 66 (467)
..|.|.++++.+|-- .+.+++.+.. |.+. ..+ ..++..+.-. + ...-.....|++.|++
T Consensus 23 ~~V~ItG~g~~~p~g-~~~~~~w~~l~~g~~~i~~~~~~~~~~~~~~~~g~~~fd~~~~i~~~~~~~~d~~~~l~~~aa~ 101 (428)
T 3mqd_A 23 RRVVVTGMGIVSSIG-SNTEEVTASLREAKSGISRAEEYAELGFRCQVHGAPDIDIESLVDRRAMRFHGRGTAWNHIAMD 101 (428)
T ss_dssp CCEEEEEEEEEBTTB-SSHHHHHHHHHHTCCCEEECHHHHHTTCSCCEEECCCCCHHHHSCTGGGTTCCHHHHHHHHHHH
T ss_pred CCEEEEeeEEECCCc-CCHHHHHHHHHcCCCcceeCCcccccCCCcccccccCCChhhcCCHHHHhhCCHHHHHHHHHHH
Confidence 469999999999986 5777766552 3221 000 0011100000 0 0112246789999999
Q ss_pred HHHHHcCCCcCCcC----EEEEEeccCCCC--------------------------CCcHHHHHHHHhcccCCCCeeEEe
Q 012253 67 SLLEKYKIDPTQIG----RLEVGSETVIDK--------------------------SKSIKTFLMQIFEKYGNTDIEGVD 116 (467)
Q Consensus 67 ~aL~~agi~~~~Id----~Li~~Tes~~~~--------------------------~ps~a~~v~~~Lgl~G~~~~~~~d 116 (467)
++|+++|+++++|| .++++|.++.+. .+.++..|+..||+. ..++.
T Consensus 102 ~Al~dAGl~~~~i~~~~~Gv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lgl~----gp~~t 177 (428)
T 3mqd_A 102 QAIADAGLTEEEVSNERTGIIMGSGGPSTRTIVDSADITREKGPKRVGPFAVPKAMSSTASATLATFFKIK----GINYS 177 (428)
T ss_dssp HHHHHHTCCHHHHSSTTEEEEEEESSCCHHHHHHHHHHHHHHCGGGGCTTCHHHHSTTHHHHHHHHHTTCC----SCEEC
T ss_pred HHHHHcCCChhHccccceEEEEccCCCchHHHHHHHHHHHhcCccccCchhhccccccHHHHHHHHHcCCC----Cceee
Confidence 99999999999998 688988765422 245788999999982 26889
Q ss_pred eCCcChHHHHHHHHHHHHHHhCCCCCCEEEEEEeeccc---------------------------ccCCCCCCcccccee
Q 012253 117 STNACYGGTAALFNCVNWVESASWDGRYGLVVCTDSAV---------------------------YAEGPARPTGGAAAV 169 (467)
Q Consensus 117 i~~aC~gg~~AL~~A~~~l~a~~~~~~~aLVV~sD~~~---------------------------y~~~~~~~t~GdGAv 169 (467)
+..+|++++.||..|..+|++|.. +.|||+++|... |+...+....||||+
T Consensus 178 v~~aCsSgl~Ai~~A~~~I~~G~~--d~alvgG~e~~s~~~~~~~~~~~~ls~~~~~~p~~~~rpfd~~~~G~v~gEGAa 255 (428)
T 3mqd_A 178 ISSACATSNHCIGNAYEMIQYGKQ--DRMFAGGCEDLDWTLSVLFDAMGAMSSKYNDTPSTASRAYDKNRDGFVIAGGAG 255 (428)
T ss_dssp CCCGGGHHHHHHHHHHHHHHTTSC--SEEEEEEEECCCHHHHHHHHHTTCBCCTTTTSGGGSCCTTBTTCCSBCBBCEEE
T ss_pred ecCccHHHHHHHHHHHHHHHcCCC--CEEEEEeecccchHHHHHHHHhhhhcccccCCcccccCcccCCCCCcccccceE
Confidence 999999999999999999999976 999999999751 000112345799999
Q ss_pred EEEecCC
Q 012253 170 AMLIGPD 176 (467)
Q Consensus 170 A~Ll~~~ 176 (467)
|+||.+.
T Consensus 256 avvL~~~ 262 (428)
T 3mqd_A 256 VLVLEDL 262 (428)
T ss_dssp EEEEEEH
T ss_pred EEEEccH
Confidence 9999864
|
| >2wge_A 3-oxoacyl-[acyl-carrier-protein] synthase 1; beta ketoacyl synthase I thiolactomycin, cytoplasm, transferase, acyltransferase; HET: TLM; 1.80A {Mycobacterium tuberculosis} PDB: 2wgd_A* 2wgg_A* 2wgf_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=9e-11 Score=121.07 Aligned_cols=222 Identities=15% Similarity=0.085 Sum_probs=139.4
Q ss_pred ceeEEeEEEEecCCceeehhHHhhhh--CCCc----CeeE---EeccceEeeccCCC-------------CCHHHHHHHH
Q 012253 7 KNVGILALDIYFPPTCVLQEALEVHD--GVSK----GKYT---VGLGQDCMAFCSEV-------------EDVISMSLTV 64 (467)
Q Consensus 7 ~~vgI~ai~~y~P~~~v~~~el~~~~--g~~~----~k~~---~Gig~r~~av~~~~-------------Ed~~~ma~~A 64 (467)
+.|-|.++++.+|-- .+.+++.+.. |.+. .++. .++-.+.-.+.+++ .....|+++|
T Consensus 12 ~~vaI~G~g~~~p~g-~~~~~~w~~l~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~d~~~~l~l~a 90 (416)
T 2wge_A 12 PSVVVTAVTATTSIS-PDIESTWKGLLAGESGIHALEDEFVTKWDLAVKIGGHLKDPVDSHMGRLDMRRMSYVQRMGKLL 90 (416)
T ss_dssp CCEEEEEEEEEESSC-SSHHHHHHHHHTTCCCCEECCCHHHHHHTCSCCEEBCCSSCGGGGCCHHHHHHSCHHHHHHHHH
T ss_pred CcEEEEeeEEECCCC-CCHHHHHHHHHcCCCEEEeCCccccccccCCccEEEEeCCchhhhCCHHHHHhcCHHHHHHHHH
Confidence 469999999999987 5777766553 3221 0110 01111111111110 1245899999
Q ss_pred HHHHHHHcCCCcCCcCE----EEEEeccCCCC-----------------CC---------cHHHHHHHHhcccCCCCeeE
Q 012253 65 VTSLLEKYKIDPTQIGR----LEVGSETVIDK-----------------SK---------SIKTFLMQIFEKYGNTDIEG 114 (467)
Q Consensus 65 a~~aL~~agi~~~~Id~----Li~~Tes~~~~-----------------~p---------s~a~~v~~~Lgl~G~~~~~~ 114 (467)
++++|+++|+ +++|. |+++|.++... .| .++.+|+..||+. ..+
T Consensus 91 a~~AL~dAG~--~~~~~~~~gv~vg~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~ia~~lgl~----gp~ 164 (416)
T 2wge_A 91 GGQLWESAGS--PEVDPDRFAVVVGTGLGGAERIVESYDLMNAGGPRKVSPLAVQMIMPNGAAAVIGLQLGAR----AGV 164 (416)
T ss_dssp HHHHHHHTTC--CCCCGGGEEEEEECCSCCCTHHHHHHHHHHHHCGGGSCTTHHHHHSTTHHHHHHHHHHTCC----SCE
T ss_pred HHHHHHHcCC--CccCCCceEEEEeecCCcHHHHHHHHHHHHhcCcccCCchhhccccchhHHHHHHHHhccC----CCc
Confidence 9999999998 44553 88888776431 22 4788999999982 368
Q ss_pred EeeCCcChHHHHHHHHHHHHHHhCCCCCCEEEEEEeecc-cc-----------cC---------------CCCCCccccc
Q 012253 115 VDSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDSA-VY-----------AE---------------GPARPTGGAA 167 (467)
Q Consensus 115 ~di~~aC~gg~~AL~~A~~~l~a~~~~~~~aLVV~sD~~-~y-----------~~---------------~~~~~t~GdG 167 (467)
+++..||++++.||..|..+|++|.. +.+||+++|.. .. .. ..+...+|||
T Consensus 165 ~~v~~aCsS~l~Al~~A~~~I~~G~~--d~~LvgG~e~~~~~~~~~~~~~~~~l~~~~~~~~~~~~pfd~~~dg~v~geG 242 (416)
T 2wge_A 165 MTPVSACSSGSEAIAHAWRQIVMGDA--DVAVCGGVEGPIEALPIAAFSMMRAMSTRNDEPERASRPFDKDRDGFVFGEA 242 (416)
T ss_dssp ECCCCGGGHHHHHHHHHHHHHHTTSC--SEEEEEECCCCCCHHHHHHHHTTTCBCCCTTSGGGSCCTTBTTCCCBCBBCE
T ss_pred ccccCchHHHHHHHHHHHHHHHcCCC--CEEEEeeecCccchHHHHHHHhcchhhccccCCcccccccccCCCCccccCc
Confidence 99999999999999999999999976 99999999975 11 10 0123467999
Q ss_pred eeEEEecCCC--------Cceeeccccccccc-CcccccccCCCCCCceecCcchHHHHHHHHHHHHHHHHHHHHhhhcC
Q 012253 168 AVAMLIGPDA--------PIAFESKLRGSHMS-HAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKYFCQKFEKLEGR 238 (467)
Q Consensus 168 AvA~Ll~~~~--------~~~~~~~~~~~~~~-~~~df~~p~~~~~~~~vdG~~s~~~y~~a~~~~~~~~~~~~~~~~~~ 238 (467)
|+|+||++.+ ++.. +.++... +......|. .++. ....+.+..+++ +
T Consensus 243 aaavvL~~~~~A~~~g~~~~a~---i~g~~~~~dg~~~~~p~-------~~~~--------~~~~ai~~al~~------a 298 (416)
T 2wge_A 243 GALMLIETEEHAKARGAKPLAR---LLGAGITSDAFHMVAPA-------ADGV--------RAGRAMTRSLEL------A 298 (416)
T ss_dssp EEEEEEEEHHHHHHTTCCCSEE---EEEEEEEECCSCSSSCC-------TTCH--------HHHHHHHHHHHH------H
T ss_pred eEEEEECcHHHHHHCCCceEEE---EEEEEEecCCCCccCCC-------CChH--------HHHHHHHHHHHH------c
Confidence 9999997642 1111 1121111 111122231 1221 122233333333 3
Q ss_pred CCCccccceeccCCchHHHHHHH
Q 012253 239 QFSMLDVDYFVFHSPYNKLVQKS 261 (467)
Q Consensus 239 ~~~~~d~d~~i~H~p~~k~~~k~ 261 (467)
+++++|||++.+|..++.+.+..
T Consensus 299 gl~~~dId~ve~HgtgT~~gD~~ 321 (416)
T 2wge_A 299 GLSPADIDHVNAHGTATPIGDAA 321 (416)
T ss_dssp TCCGGGCCEEECCCCCCHHHHHH
T ss_pred CCCHHHCCEEEECCCCCcCCCHH
Confidence 69999999999999888766544
|
| >2qo3_A Eryaii erythromycin polyketide synthase modules 3; ketosynthase, acyltransferase, phosphopantetheine, transfera; 2.59A {Saccharopolyspora erythraea} | Back alignment and structure |
|---|
Probab=99.33 E-value=7.9e-11 Score=132.49 Aligned_cols=176 Identities=17% Similarity=0.115 Sum_probs=120.4
Q ss_pred HHHHHHHHHHHHHHHcCCCcCCcCE----EEEEeccCCCCC-----------------C-cHHHHHHHHhcccCCCCeeE
Q 012253 57 VISMSLTVVTSLLEKYKIDPTQIGR----LEVGSETVIDKS-----------------K-SIKTFLMQIFEKYGNTDIEG 114 (467)
Q Consensus 57 ~~~ma~~Aa~~aL~~agi~~~~Id~----Li~~Tes~~~~~-----------------p-s~a~~v~~~Lgl~G~~~~~~ 114 (467)
...|+++|++++|+++|+++++||. |++|+.++.+.. + .++..|+..||+.| .+
T Consensus 95 ~~rL~leaa~eALedAGi~~~~i~~~~~gV~vG~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~ris~~lgl~G----ps 170 (915)
T 2qo3_A 95 QQRLLLETSWELVENAGIDPHSLRGTATGVFLGVAKFGYGEDTAAAEDVEGYSVTGVAPAVASGRISYTMGLEG----PS 170 (915)
T ss_dssp HHHHHHHHHHHHHHHTTCCGGGGTTBCCEEEEECCCCCTTTTCC---CTTCHHHHTTCHHHHHHHHHHHHTBCS----CE
T ss_pred HHHHHHHHHHHHHHHcCCChHHcCCcceEEEEEecCchHHhhhcccccccccccccccccHHHHHHHHHhCCCC----CE
Confidence 4689999999999999999999994 889988776531 1 46889999999832 58
Q ss_pred EeeCCcChHHHHHHHHHHHHHHhCCCCCCEEEEEEeecccc----------------------cCCCCCCccccceeEEE
Q 012253 115 VDSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDSAVY----------------------AEGPARPTGGAAAVAML 172 (467)
Q Consensus 115 ~di~~aC~gg~~AL~~A~~~l~a~~~~~~~aLVV~sD~~~y----------------------~~~~~~~t~GdGAvA~L 172 (467)
+++..||++++.||..|..+|++|.. +.|||+++|...- +...+...+||||+|+|
T Consensus 171 ~tv~taCsSsl~Al~~A~~~I~~G~~--d~aLvgGve~~~~p~~~~~~~~~~~ls~~g~~~~Fd~~adG~v~gEGagavV 248 (915)
T 2qo3_A 171 ISVDTACSSSLVALHLAVESLRKGES--SMAVVGGAAVMATPGVFVDFSRQRALAADGRSKAFGAGADGFGFSEGVTLVL 248 (915)
T ss_dssp EEEECGGGHHHHHHHHHHHHHHTTSC--SSEEEEEEECCSSTHHHHHHHTTTCBCSSCCCCTTBTTCCCBCBBCEEEEEE
T ss_pred EEECCCCHHHHHHHHHHHHHHHcCCC--CEEEEeEehhhcCHHHHHHHhhhcccCCCCCcccccCCCCceeecCceEEEE
Confidence 88999999999999999999999976 9999999997510 01112345799999999
Q ss_pred ecCCC-------Cc-eeecccccccccCcccccccCCCCCCceecCcchHHHHHHHHHHHHHHHHHHHHhhhcCCCCccc
Q 012253 173 IGPDA-------PI-AFESKLRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKYFCQKFEKLEGRQFSMLD 244 (467)
Q Consensus 173 l~~~~-------~~-~~~~~~~~~~~~~~~df~~p~~~~~~~~vdG~~s~~~y~~a~~~~~~~~~~~~~~~~~~~~~~~d 244 (467)
|.+.+ ++ .. +.|+...+ |-... +...| ++ .....+.+... +.+|++++|
T Consensus 249 L~~~~~A~~~g~~i~a~---I~G~~~~~--dg~~~--~~~~p--~~--------~~~~~~i~~Al------~~Agl~p~d 305 (915)
T 2qo3_A 249 LERLSEARRNGHEVLAV---VRGSALNQ--DGASN--GLSAP--SG--------PAQRRVIRQAL------ESCGLEPGD 305 (915)
T ss_dssp EEEHHHHHHTTCCCCEE---EEEEEEEE--CCSCS--STTCC--CH--------HHHHHHHHHHH------HHTTCCGGG
T ss_pred EeEhHHhhhCCCCeEEE---EEEEEEec--CCCcc--CCCCC--CH--------HHHHHHHHHHH------HHcCCCHHH
Confidence 97632 11 11 12222211 11111 00111 11 11222222222 345799999
Q ss_pred cceeccCCchHHHHHHH
Q 012253 245 VDYFVFHSPYNKLVQKS 261 (467)
Q Consensus 245 ~d~~i~H~p~~k~~~k~ 261 (467)
||++..|..++.+.+..
T Consensus 306 Id~ve~HgtgT~~gD~~ 322 (915)
T 2qo3_A 306 VDAVEAHGTGTALGDPI 322 (915)
T ss_dssp CCEEECCCCCCTTTHHH
T ss_pred CcEEEecCCCCccCCHH
Confidence 99999999887765544
|
| >2hg4_A DEBS, 6-deoxyerythronolide B synthase; ketosynthase, acyltransferase, module 5, transferase; 2.73A {Saccharopolyspora erythraea} | Back alignment and structure |
|---|
Probab=99.30 E-value=9.5e-10 Score=123.75 Aligned_cols=176 Identities=19% Similarity=0.169 Sum_probs=119.3
Q ss_pred HHHHHHHHHHHHHHHcCCCcCCcCE----EEEEeccCCCCC-------------------CcHHHHHHHHhcccCCCCee
Q 012253 57 VISMSLTVVTSLLEKYKIDPTQIGR----LEVGSETVIDKS-------------------KSIKTFLMQIFEKYGNTDIE 113 (467)
Q Consensus 57 ~~~ma~~Aa~~aL~~agi~~~~Id~----Li~~Tes~~~~~-------------------ps~a~~v~~~Lgl~G~~~~~ 113 (467)
...|+++|++++|+++|+++++|+. |++|+.++++.. ..++..|+..||+.| .
T Consensus 116 ~~rl~leaa~eALedAGi~~~~i~~~~~gV~vG~~~~d~~~~~~~~~~~~~~~~~~g~~~~~~a~ris~~lgl~G----p 191 (917)
T 2hg4_A 116 QQRIMLEISWEALERAGHDPVSLRGSATGVFTGVGTVDYGPRPDEAPDEVLGYVGTGTASSVASGRVAYCLGLEG----P 191 (917)
T ss_dssp HHHHHHHHHHHHHHHTTCCGGGGTTSCEEEEEEECCCCCSCCTTSSCGGGGGGHHHHHCHHHHHHHHHHHHTCCS----C
T ss_pred HHHHHHHHHHHHHHHcCCChHHcCCcceEEEEEeCCchhhhhhhcCccccCcccccccccchHHHHHHHhcCCCC----C
Confidence 4689999999999999999999985 888888766531 136779999999832 5
Q ss_pred EEeeCCcChHHHHHHHHHHHHHHhCCCCCCEEEEEEeeccc-------ccC-------C--------CCCCccccceeEE
Q 012253 114 GVDSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDSAV-------YAE-------G--------PARPTGGAAAVAM 171 (467)
Q Consensus 114 ~~di~~aC~gg~~AL~~A~~~l~a~~~~~~~aLVV~sD~~~-------y~~-------~--------~~~~t~GdGAvA~ 171 (467)
++.+..||++++.||..|+..|++|.. +.|||+++|... +.. + .+-...||||+|+
T Consensus 192 s~tv~taCsSsl~Al~~A~~~I~~G~~--d~aLvgGv~~~~~p~~~~~~~~~~~ls~~g~~~pFd~~adG~~~gEGagav 269 (917)
T 2hg4_A 192 AMTVDTACSSGLTALHLAMESLRRDEC--GLALAGGVTVMSSPGAFTEFRSQGGLAADGRCKPFSKAADGFGLAEGAGVL 269 (917)
T ss_dssp EEEEECGGGHHHHHHHHHHHHHHTTSC--SEEEEEEEECCCSTHHHHHHTTSSCBCTTSCCCTTBTTCCCBCBBCEEEEE
T ss_pred eEeecCCcHHHHHHHHHHHHHHHcCCC--CEEEEeEeccccChhhhHhhhhccCcCCccccCcccccccCCCCcceEEEE
Confidence 788899999999999999999999976 999999999851 110 0 1124569999999
Q ss_pred EecCCC-------Cc-eeecccccccccCcccccccCCCCCCceecCcchHHHHHHHHHHHHHHHHHHHHhhhcCCCCcc
Q 012253 172 LIGPDA-------PI-AFESKLRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKYFCQKFEKLEGRQFSML 243 (467)
Q Consensus 172 Ll~~~~-------~~-~~~~~~~~~~~~~~~df~~p~~~~~~~~vdG~~s~~~y~~a~~~~~~~~~~~~~~~~~~~~~~~ 243 (467)
||.+.. ++ .. +.|+...+ |-... +...|. + .....+.+...+ .+|++++
T Consensus 270 VL~~l~~A~~~g~~i~a~---I~G~~~~~--dg~~~--~~~~P~--~--------~~q~~ai~~Al~------~Agl~p~ 326 (917)
T 2hg4_A 270 VLQRLSAARREGRPVLAV---LRGSAVNQ--DGASN--GLTAPS--G--------PAQQRVIRRALE------NAGVRAG 326 (917)
T ss_dssp EEEEHHHHHHTTCCCCEE---EEEEEEEE--CCSCS--SSSCCC--H--------HHHHHHHHHHHH------HHTCCGG
T ss_pred EEeeHHHHHhCCCCeEEE---EEEEEEec--CCCcc--CCCCCC--H--------HHHHHHHHHHHH------HcCCCHH
Confidence 997632 11 11 12222211 11111 001121 1 122223333322 3479999
Q ss_pred ccceeccCCchHHHHHHH
Q 012253 244 DVDYFVFHSPYNKLVQKS 261 (467)
Q Consensus 244 d~d~~i~H~p~~k~~~k~ 261 (467)
|||++..|..++.+.+.+
T Consensus 327 dId~veaHgtgT~~gD~~ 344 (917)
T 2hg4_A 327 DVDYVEAHGTGTRLGDPI 344 (917)
T ss_dssp GCCEEECCCCCCTTHHHH
T ss_pred HCCEEeeccCCCccCcHH
Confidence 999999999998876554
|
| >2vba_A 3-oxoacyl-[acyl-carrier-protein] synthase 1; cytoplasm, antibiotic, transferase, amino-thiazole, acyltransferase, lipid synthesis; HET: P4T; 1.36A {Escherichia coli} SCOP: c.95.1.1 c.95.1.1 PDB: 1fj4_A* 1g5x_A 2aq7_A* 1fj8_A* 2aqb_A 2bui_A 2buh_A 2vb7_A* 2vb8_A 2vb9_A* 1h4f_A 1dd8_A 2cdh_A 2bz4_A 2byz_A 2bz3_A* 2byy_A* 1f91_A* 2cf2_A 2byw_A ... | Back alignment and structure |
|---|
Probab=99.27 E-value=2.6e-10 Score=117.28 Aligned_cols=163 Identities=12% Similarity=0.046 Sum_probs=114.5
Q ss_pred ceeEEeEEEEecCCceeehhHHhhhh--CCCcC-e---eE-EeccceEee---ccCC---------C-CCHHHHHHHHHH
Q 012253 7 KNVGILALDIYFPPTCVLQEALEVHD--GVSKG-K---YT-VGLGQDCMA---FCSE---------V-EDVISMSLTVVT 66 (467)
Q Consensus 7 ~~vgI~ai~~y~P~~~v~~~el~~~~--g~~~~-k---~~-~Gig~r~~a---v~~~---------~-Ed~~~ma~~Aa~ 66 (467)
+.|-|.++++.+|-- .+.+++.+.. |.+.= . +. .++..+... +... . .....|+++|++
T Consensus 2 ~~v~ItG~g~~~p~g-~~~~~~w~~l~~g~~~i~~~~~~~~~~~~~~~~~~v~fd~~~~~~~~~~~~~d~~~~l~l~aa~ 80 (406)
T 2vba_A 2 KRAVITGLGIVSSIG-NNQQEVLASLREGRSGITFSQELKDSGMRSHVWGNVKLDTTGLIDRKVVRFMSDASIYAFLSME 80 (406)
T ss_dssp CCEEEEEEEEEBTTB-SSHHHHHHHHHHTCCCEEECHHHHHTTCSCCEEECCCCCCTTSSCHHHHTTCCHHHHHHHHHHH
T ss_pred CCEEEEeeEEECCCC-CCHHHHHHHHHcCCCeEEeCCcccccCCccceEEEecCChhhcCCHHHHHhcCHHHHHHHHHHH
Confidence 369999999999987 6777765542 33210 0 00 001011000 1100 1 125789999999
Q ss_pred HHHHHcCCCcCCcCE-----EEEEeccCCC-------------C--------------CCcHHHHHHHHhcccCCCCeeE
Q 012253 67 SLLEKYKIDPTQIGR-----LEVGSETVID-------------K--------------SKSIKTFLMQIFEKYGNTDIEG 114 (467)
Q Consensus 67 ~aL~~agi~~~~Id~-----Li~~Tes~~~-------------~--------------~ps~a~~v~~~Lgl~G~~~~~~ 114 (467)
++|+++|+++++||. |++||.++.. . ...++.+|+..||+. -.+
T Consensus 81 ~Al~dAg~~~~~i~~~~~~gv~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~is~~lgl~----Gp~ 156 (406)
T 2vba_A 81 QAIADAGLSPEAYQNNPRVGLIAGSGGGSPRFQVFGADAMRGPRGLKAVGPYVVTKAMASGVSACLATPFKIH----GVN 156 (406)
T ss_dssp HHHHHHTCCHHHHTTCTTEEEEEECSSCCHHHHHHHHHHHTSTTTHHHHCTTHHHHHSTTHHHHHHHTTTTCC----SCE
T ss_pred HHHHHCCCChhHcCCCCCEEEEEEECCcchHHHHHHHHHHHhccCccccChhhhhhhhhHHHHHHHHHhccCC----Cce
Confidence 999999999988886 8999876542 1 125788999999983 258
Q ss_pred EeeCCcChHHHHHHHHHHHHHHhCCCCCCEEEEEEeeccc-c---------------c---CC--------CCCCccccc
Q 012253 115 VDSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDSAV-Y---------------A---EG--------PARPTGGAA 167 (467)
Q Consensus 115 ~di~~aC~gg~~AL~~A~~~l~a~~~~~~~aLVV~sD~~~-y---------------~---~~--------~~~~t~GdG 167 (467)
+.+..+|++++.||..|..+|++|.. +.+||+++|... . . ++ .+....|||
T Consensus 157 ~~v~taCsS~l~Al~~A~~~I~~G~~--d~alvgG~e~~~~~~~~~~~~~~~ls~~~~~~p~~~~~pfd~~~~G~v~gEG 234 (406)
T 2vba_A 157 YSISSACATSAHCIGNAVEQIQLGKQ--DIVFAGGGEELCWEMACEFDAMGALSTKYNDTPEKASRTYDAHRDGFVIAGG 234 (406)
T ss_dssp EEEECGGGHHHHHHHHHHHHHHTTSC--SEEEEEEEECCCHHHHHHHHHTTCBCCSCTTSGGGSCCTTBTTCCSBCBBCE
T ss_pred eeeccchhHHHHHHHHHHHHHHcCCC--CEEEEeeeccccChHHHHHhhccccccccCCCCccccCcCcCCCCceEeece
Confidence 89999999999999999999999976 999999999751 1 0 00 112457999
Q ss_pred eeEEEecCC
Q 012253 168 AVAMLIGPD 176 (467)
Q Consensus 168 AvA~Ll~~~ 176 (467)
|+|+||++.
T Consensus 235 aaavvL~~~ 243 (406)
T 2vba_A 235 GGMVVVEEL 243 (406)
T ss_dssp EEEEEEEEH
T ss_pred EEEEEeCcH
Confidence 999999864
|
| >3hhd_A Fatty acid synthase; transferase, multienzyme, megasynthase, fatty acid synthesis, acetylation, cytoplasm, fatty acid biosynthesis, hydrolase; 2.15A {Homo sapiens} PDB: 2jfk_A* 2jfd_A | Back alignment and structure |
|---|
Probab=99.19 E-value=6.1e-10 Score=125.87 Aligned_cols=230 Identities=16% Similarity=0.173 Sum_probs=143.8
Q ss_pred CceeEEeEEEEecCCceeehhHHhhhh--CCC-----cCeeEEe---ccceEe------eccCC----------CCC-HH
Q 012253 6 PKNVGILALDIYFPPTCVLQEALEVHD--GVS-----KGKYTVG---LGQDCM------AFCSE----------VED-VI 58 (467)
Q Consensus 6 ~~~vgI~ai~~y~P~~~v~~~el~~~~--g~~-----~~k~~~G---ig~r~~------av~~~----------~Ed-~~ 58 (467)
...|-|.+|++-+|.- .+.+++.+.. |.+ +.++..+ ...+.- .|... ..| ..
T Consensus 3 ~~~IaIvGmg~r~P~~-~~~~~~W~~l~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~FD~~~f~i~~~ea~~mDp~~ 81 (965)
T 3hhd_A 3 GEEVVIAGMSGKLPES-ENLQEFWDNLIGGVDMVTDDDRRWKAGLYGLPRRSGKLKDLSRFDASFFGVHPKQAHTMDPQL 81 (965)
T ss_dssp CCCEEEEEEEEEBTTB-SSHHHHHHHHHTTCCCEECSSSSSCTTGGGCCSCEECCSCSSCCCTTTTTCCHHHHHTSCHHH
T ss_pred CCCEEEEeeeEECCCC-CCHHHHHHHHHcCCCcccCCCcccccccccCcccccccCChhhcChhhcCCCHHHHhhcCHHH
Confidence 3579999999999985 6777766652 322 1111100 000000 01000 012 35
Q ss_pred HHHHHHHHHHHHHcCCCcCCcC----EEEEEeccCCC-------------------CCCcHHHHHHHHhcccCCCCeeEE
Q 012253 59 SMSLTVVTSLLEKYKIDPTQIG----RLEVGSETVID-------------------KSKSIKTFLMQIFEKYGNTDIEGV 115 (467)
Q Consensus 59 ~ma~~Aa~~aL~~agi~~~~Id----~Li~~Tes~~~-------------------~~ps~a~~v~~~Lgl~G~~~~~~~ 115 (467)
.|+++|++++|+++|+++++|+ .+++|+.++++ ....++..|...||+.| .++
T Consensus 82 rL~leaa~eALedAGi~~~~i~~~~~Gv~vG~~~~d~~~~~~~~~~~~~~~~~~g~~~~~~a~ris~~lgl~G----Ps~ 157 (965)
T 3hhd_A 82 RLLLEVTYEAIVDGGINPDSLRGTHTGVWVGVSGSETSEALSRDPETLVGYSMVGCQRAMMANRLSFFFDFRG----PSI 157 (965)
T ss_dssp HHHHHHHHHHHHHTTCCGGGGTTSCCEEEEEECCCHHHHHHTSCTTTCCTHHHHHHSTTHHHHHHHHHHTCCS----CEE
T ss_pred HHHHHHHHHHHHHcCCChHHcCCceeEEEEeccchhHHHHHhcCccccCcccccccccchHHHHHHHHhCCCC----Cee
Confidence 7999999999999999999999 78898776543 22457889999999833 588
Q ss_pred eeCCcChHHHHHHHHHHHHHHhCCCCCCEEEEEEeeccc----c----------cCC--------CCCCccccceeEEEe
Q 012253 116 DSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDSAV----Y----------AEG--------PARPTGGAAAVAMLI 173 (467)
Q Consensus 116 di~~aC~gg~~AL~~A~~~l~a~~~~~~~aLVV~sD~~~----y----------~~~--------~~~~t~GdGAvA~Ll 173 (467)
.+..||++++.||..|+..|++|.+ +.|||.++|... + .++ .+....||||+|+||
T Consensus 158 tvdtACSSsl~Al~~A~~~I~~G~~--d~aLagGv~~~~~p~~~~~~~~~~~ls~~g~~~~Fd~~adG~~~gEGagavvL 235 (965)
T 3hhd_A 158 ALDTACSSSLMALQNAYQAIHSGQC--PAAIVGGINVLLKPNTSVQFLRLGMLSPEGTCKAFDTAGNGYCRSEGVVAVLL 235 (965)
T ss_dssp EEECGGGHHHHHHHHHHHHHHTTSC--SEEEEEEEECCCCHHHHHHHHHHTCBCTTCCCCTTBTTCCSBCBBCEEEEEEE
T ss_pred eecCchHHHHHHHHHHHHHHHcCCC--CEEEEeeeccccCHHHHHHHHhccCcCCCCccccchhccCCccccceEEEEEE
Confidence 8999999999999999999999976 999999999751 0 011 112456999999999
Q ss_pred cCCCC-ceeecccccccccCcccccccCCCCCCceecCcchHHHHHHHHHHHHHHHHHHHHhhhcCCCCccccceeccCC
Q 012253 174 GPDAP-IAFESKLRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKYFCQKFEKLEGRQFSMLDVDYFVFHS 252 (467)
Q Consensus 174 ~~~~~-~~~~~~~~~~~~~~~~df~~p~~~~~~~~vdG~~s~~~y~~a~~~~~~~~~~~~~~~~~~~~~~~d~d~~i~H~ 252 (467)
.+... ..+...+.|+...+ |-.... +...|..++ ...+.+... +.+|++++|||++-.|-
T Consensus 236 ~~l~~A~~i~a~I~g~~~n~--dg~~~~-~~t~P~~~~----------q~~~i~~Al------~~Agl~p~dIdyvEaHg 296 (965)
T 3hhd_A 236 TKKSLARRVYATILNAGTNT--DGFKEQ-GVTFPSGDI----------QEQLIRSLY------QSAGVAPESFEYIEAHG 296 (965)
T ss_dssp EEGGGCSSCSEEEEEEEEEE--CCCCTT-CTTSCCHHH----------HHHHHHHHH------HHTTCCGGGEEEEECCC
T ss_pred ecHHHcCcccEEEEeeeccC--CCCCCC-CCcCCCHHH----------HHHHHHHHH------HHhCCCHHHhccccccC
Confidence 87532 11101122222221 111100 111121111 122222222 34579999999999998
Q ss_pred chHHHHHHH
Q 012253 253 PYNKLVQKS 261 (467)
Q Consensus 253 p~~k~~~k~ 261 (467)
-++.+.+.+
T Consensus 297 TgT~~gD~~ 305 (965)
T 3hhd_A 297 TGTKVGDPQ 305 (965)
T ss_dssp CCCTTHHHH
T ss_pred CCCCCCCHH
Confidence 887665543
|
| >4egv_A Acetyl-COA acetyltransferase; NEW SUB-family, thiolase fold; 2.71A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=98.91 E-value=5.3e-08 Score=103.01 Aligned_cols=115 Identities=10% Similarity=0.014 Sum_probs=85.1
Q ss_pred CCcCe-eEEeccceEeecc---CCCCCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEeccC------------CCCCCcHH
Q 012253 34 VSKGK-YTVGLGQDCMAFC---SEVEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETV------------IDKSKSIK 97 (467)
Q Consensus 34 ~~~~k-~~~Gig~r~~av~---~~~Ed~~~ma~~Aa~~aL~~agi~~~~Id~Li~~Tes~------------~~~~ps~a 97 (467)
++|.. +..|+|+..+... ....++.+|++.|++.+|+++|+++++||-+|++.... ........
T Consensus 15 vdPRtPVIVGvG~t~~r~~~g~~~~~s~~dL~a~Ai~~AL~dAGl~p~~Vd~vI~g~~~~~~~~~~~~~~~~~g~~~~~~ 94 (520)
T 4egv_A 15 VDPRTPVIVGVGQFTERIDLDGYRGMSSVELATEAAKAALHDCGADADTVARAIDTVAGTRQFEISGPASAPLGVSSNYP 94 (520)
T ss_dssp CCTTCEEEEEEEEEEC--------CCCHHHHHHHHHHHHHHHTSSCHHHHHHHCCEEEECCC--------------CCHH
T ss_pred CCCCCeEEEEeeeccccCCCCCCCCCCHHHHHHHHHHHHHHHhCcCHHHcceEEEEEeecccccccchhhhhhccccCHH
Confidence 44532 3468886532211 12467899999999999999999999988776443211 11234567
Q ss_pred HHHHHHhcccCCCCeeEEeeCCcChHHHHHHHHHHHHHHhCCCCCCEEEEEEeecc
Q 012253 98 TFLMQIFEKYGNTDIEGVDSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDSA 153 (467)
Q Consensus 98 ~~v~~~Lgl~G~~~~~~~di~~aC~gg~~AL~~A~~~l~a~~~~~~~aLVV~sD~~ 153 (467)
..+...||+ +...++.+.++|.++..++..|...|++|.+ +.||+++.|.+
T Consensus 95 ~~va~~lGl---~~~~~~~~~~~caSg~~av~~AA~aI~aG~a--dvvlAgG~EsM 145 (520)
T 4egv_A 95 RSVARNIGA---DPAHAVLEVIGGQSPQHLATEFGGKIAAGEN--DVVLIFGSENT 145 (520)
T ss_dssp HHHHHHHTC---CCSEEEECCSSTTHHHHHHHHHHHHHHTTSC--SEEEEEEEECC
T ss_pred HHHHHHcCC---CCceEEEecCCCHHHHHHHHHHHHHHHcCCC--CEEEEEEEEec
Confidence 789999998 4567888889999999999999999999976 99999999875
|
| >3zen_D Fatty acid synthase; transferase, mycolic acid biosynthesis, multifunctional ENZY substrate channeling; HET: FMN; 7.50A {Mycobacterium smegmatis} PDB: 4b3y_A* | Back alignment and structure |
|---|
Probab=98.78 E-value=8e-08 Score=118.31 Aligned_cols=91 Identities=13% Similarity=0.081 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHHHHHcCCCcCCcC--------EEEEEeccCCC------------------------CCCcHHHHHHH-H
Q 012253 57 VISMSLTVVTSLLEKYKIDPTQIG--------RLEVGSETVID------------------------KSKSIKTFLMQ-I 103 (467)
Q Consensus 57 ~~~ma~~Aa~~aL~~agi~~~~Id--------~Li~~Tes~~~------------------------~~ps~a~~v~~-~ 103 (467)
...|++.|+++||+++|+++++|+ .+++|+..+.. ....+++.+.. .
T Consensus 2647 ~~rL~l~aa~eALedAGi~p~~l~~~~~~~~vGV~vG~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~is~~~ 2726 (3089)
T 3zen_D 2647 VALWNIVATVDAFLSSGFTPTELMRWVHPSQVASTQGTGMGGMTSMQTMYHGNLLGRAKPNDILQEVLPNVVAAHVMQSY 2726 (3089)
T ss_dssp HHHHHHHHHHHHHTTSCSCGGGHHHHSCGGGEEEEEEESSCCHHHHHHHHHHHHTTCCCCTTHHHHTSTTHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCCCHHHhhcccCcceeEEEEeecCccHHHHHHHHHHHhcCCCccchhhccccccHHHHHHHHHH
Confidence 578999999999999999999885 57788754310 01234556654 4
Q ss_pred hcccCCCCeeEEeeCCcChHHHHHHHHHHHHHHhCCCCCCEEEEEEeecc
Q 012253 104 FEKYGNTDIEGVDSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDSA 153 (467)
Q Consensus 104 Lgl~G~~~~~~~di~~aC~gg~~AL~~A~~~l~a~~~~~~~aLVV~sD~~ 153 (467)
||+. ..++.+..||++++.||..|+..|++|.+ +.+||.++|..
T Consensus 2727 lGl~----GPs~tV~tACSSsl~Al~~A~~~IrsG~~--d~aLaGGve~l 2770 (3089)
T 3zen_D 2727 VGGY----GAMVHPVGACATAAVSVEEGVDKIKLGKA--DLVIAGGFDDL 2770 (3089)
T ss_dssp TCCC----SCEECCBCTTCHHHHHHHHHHHHHHTTSC--SEEEEEEEECC
T ss_pred cCCC----CCceeeccchhhHHHHHHHHHHHHHCCCC--CeeEEeeeccc
Confidence 5872 36899999999999999999999999976 99999999974
|
| >2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.20 E-value=4.1e-06 Score=96.22 Aligned_cols=90 Identities=16% Similarity=0.069 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHHHHcCCC-cCCc----C----EEEEEeccCCCC------------------------CCcHHHHHHH-H
Q 012253 58 ISMSLTVVTSLLEKYKID-PTQI----G----RLEVGSETVIDK------------------------SKSIKTFLMQ-I 103 (467)
Q Consensus 58 ~~ma~~Aa~~aL~~agi~-~~~I----d----~Li~~Tes~~~~------------------------~ps~a~~v~~-~ 103 (467)
..|++.|+.+||+++|++ |.++ + .+++||..+... ...++++|.. .
T Consensus 1013 qrLaLeAa~EALedAGI~dP~ei~~~i~~s~vGV~vGSg~Gg~~~l~~~~~~~~~~~~v~~~~l~~~~~nt~Aa~Vs~~~ 1092 (1688)
T 2pff_A 1013 TLFVLVSVVEAFIASGITDPYEMYKYVHVSEVGNCSGSGMGGVSALRGMFKDRFKDEPVQNDILQESFINTMSAWVNMLL 1092 (1688)
T ss_dssp TTHHHHHHHHHHTTTTCSSGGGGGGGTCCSCSCCCCCCCSCCCSSHHHHHHSSSSCCCCCSTTHHHHCTHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHcCCCChHHhccccCCceEEEEecccCCCHHHHHHHHHHHHhcCCCCcchhccccHHHHHHHHHHHH
Confidence 569999999999999997 6552 2 455565544310 1234667777 6
Q ss_pred hcccCCCCeeEEeeCCcChHHHHHHHHHHHHHHhCCCCCCEEEEEEeecc
Q 012253 104 FEKYGNTDIEGVDSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDSA 153 (467)
Q Consensus 104 Lgl~G~~~~~~~di~~aC~gg~~AL~~A~~~l~a~~~~~~~aLVV~sD~~ 153 (467)
||+.| .++.+..||++++.||..|.+.|++|.+ +.+||.++|..
T Consensus 1093 LGl~G----Ps~TVdtACASSL~AL~lA~~aIrsGea--DvaLVGGvE~m 1136 (1688)
T 2pff_A 1093 ISSSG----PIKTPVGACATSVESVDIGVETILSGKA--RICIVGGYDDF 1136 (1688)
T ss_dssp CCCCC----CCCCCCCTTTTTHHHHHHHHHHHHTTTC--SCBCCCCCCCC
T ss_pred cCCcC----CeEEecCCCchHHHHHHHHHHHHHCCCC--CEEEEeeeccC
Confidence 78733 5678899999999999999999999977 99999999974
|
| >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* | Back alignment and structure |
|---|
Probab=97.93 E-value=4.5e-05 Score=94.02 Aligned_cols=230 Identities=17% Similarity=0.189 Sum_probs=137.8
Q ss_pred ceeEEeEEEEecCCceeehhHHhhhh--CCC-----cCeeEEe-cc-ceEeeccCC-----------------CCC-HHH
Q 012253 7 KNVGILALDIYFPPTCVLQEALEVHD--GVS-----KGKYTVG-LG-QDCMAFCSE-----------------VED-VIS 59 (467)
Q Consensus 7 ~~vgI~ai~~y~P~~~v~~~el~~~~--g~~-----~~k~~~G-ig-~r~~av~~~-----------------~Ed-~~~ 59 (467)
..|-|.+|++-+|.- -+.+++.+.. |.+ +.++..+ .+ .++..+..+ .-| -.-
T Consensus 2 ~~iaI~G~~~~~p~~-~~~~~~w~~l~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~fd~~~f~i~~~ea~~~dpq~r 80 (2512)
T 2vz8_A 2 EEVVIAGMSGKLPES-ENLEEFWANLIGGVDMVTADDRRWKAGLYGLPRRMGKLKDLSRFDASFFGVHSKQANTMDPQLR 80 (2512)
T ss_dssp CCEEEEEEEEEBTTB-SSHHHHHHHHHTTCCCEEECSSSSCTTGGGCCSEEECCSCSSCCCTTTTTCCHHHHHTSCHHHH
T ss_pred CCEEEEeeeeeCCCC-CCHHHHHHHHHcCCccccCCCcccccccccCcccceecCCcccCCHhhcCCCHHHHHhcCHHHH
Confidence 358999999999984 6777766552 321 1111000 00 001111100 012 357
Q ss_pred HHHHHHHHHHHHcCCCcCCcC----EEEEEeccCCC---------C---------CC-cHHHHHHHHhcccCCCCeeEEe
Q 012253 60 MSLTVVTSLLEKYKIDPTQIG----RLEVGSETVID---------K---------SK-SIKTFLMQIFEKYGNTDIEGVD 116 (467)
Q Consensus 60 ma~~Aa~~aL~~agi~~~~Id----~Li~~Tes~~~---------~---------~p-s~a~~v~~~Lgl~G~~~~~~~d 116 (467)
|+++++.++|+++|+++++++ .+++|+.+.++ . .+ .++..|...||+.| .++-
T Consensus 81 l~l~~~~eAle~Ag~~~~~~~~~~~gv~~G~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~ris~~~~l~G----ps~t 156 (2512)
T 2vz8_A 81 MLLEVTYEAIVDGGINPASLRGTSTGVWVGVSSSDASEALSRDPETLVGYSMIGCQRAMMANRLSFFFDFKG----PSIT 156 (2512)
T ss_dssp HHHHHHHHHHGGGTCCGGGGTTCSCEEEEEECCCHHHHHTTSCTTTSCGGGGGGTSTTHHHHHHHHHHTCCS----CEEE
T ss_pred HHHHHHHHHHHHCCCChhhcCCCCeEEEEEeccHHHHHHHhcCccccCcceecccchhHHHHHHHHHhCCCC----Ccee
Confidence 899999999999999876653 56677654321 0 11 25789999999843 3667
Q ss_pred eCCcChHHHHHHHHHHHHHHhCCCCCCEEEEEEeeccc-------cc-------CC-----C---CCCccccceeEEEec
Q 012253 117 STNACYGGTAALFNCVNWVESASWDGRYGLVVCTDSAV-------YA-------EG-----P---ARPTGGAAAVAMLIG 174 (467)
Q Consensus 117 i~~aC~gg~~AL~~A~~~l~a~~~~~~~aLVV~sD~~~-------y~-------~~-----~---~~~t~GdGAvA~Ll~ 174 (467)
+..||++++.||..|++.|++|.. ..|||-+++... +. ++ + +-...|.|++++||.
T Consensus 157 v~tACsSsl~Al~~A~~~l~~g~~--d~al~gG~~~~~~p~~~~~~~~~~~ls~~g~c~~Fd~~adG~~~gEG~~~~vLk 234 (2512)
T 2vz8_A 157 IDTACSSSLLALQSAYQAIRGGEC--SAAVVGGLNVLLKPNSSLQFMKLGMLSQDGTCRSFDAEGTGYCRAEAVVAVLLT 234 (2512)
T ss_dssp EECTTSTHHHHHHHHHHHHHTSSC--SEEEEEEEECCCCHHHHHHHHHTTCBCTTCSCCSSSTTCCCBCBBCEEEEEEEE
T ss_pred eccHhHHHHHHHHHHHHHHHcCCC--CeeEEeEeccccCHHHHHHHccCCCCCCCCCCCCCCCCCCCcceeeeEEEEEEE
Confidence 789999999999999999999976 899999999741 10 11 1 123459999999998
Q ss_pred CCCC-ceeecccccccccCcccccccCCCCCCceecCcchHHHHHHHHHHHHHHHHHHHHhhhcCCCCccccceeccCCc
Q 012253 175 PDAP-IAFESKLRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKYFCQKFEKLEGRQFSMLDVDYFVFHSP 253 (467)
Q Consensus 175 ~~~~-~~~~~~~~~~~~~~~~df~~p~~~~~~~~vdG~~s~~~y~~a~~~~~~~~~~~~~~~~~~~~~~~d~d~~i~H~p 253 (467)
+-.. ..+..-+.|+... .|-++.. +...| +|.- -.+++..+ + ..+|+.++||||+-.|-.
T Consensus 235 ~l~~A~~i~a~i~g~~~n--~dg~~~~-~~t~P--~~~~----q~~~i~~a-------l---~~ag~~p~~i~yveaHGT 295 (2512)
T 2vz8_A 235 KKSLARRVYATILNAGTN--TDGSKEQ-GVTFP--SGDV----QEQLIRSL-------Y---APAGPDPESLEYIEAHGT 295 (2512)
T ss_dssp EGGGCSCCSEEEEEEEEE--ECCCCTT-CSSSC--CHHH----HHHHHHTT-------S---GGGSSCTTSCCEEECCCC
T ss_pred EHHHCCcccEEEEEEEEc--CCCCCCC-CCCCC--CHHH----HHHHHHHH-------H---HHcCCCHHHCCEEEeecC
Confidence 7532 1111112232222 1222211 11112 1110 11222221 1 456899999999999998
Q ss_pred hHHHHHHHH
Q 012253 254 YNKLVQKSF 262 (467)
Q Consensus 254 ~~k~~~k~~ 262 (467)
.+++.+.+-
T Consensus 296 gT~~gD~~E 304 (2512)
T 2vz8_A 296 GTKVGDPQE 304 (2512)
T ss_dssp CCTTHHHHH
T ss_pred CCCCCCHHH
Confidence 888776543
|
| >2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_A* 3hmj_A* | Back alignment and structure |
|---|
Probab=97.71 E-value=0.00041 Score=82.15 Aligned_cols=91 Identities=18% Similarity=0.112 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHHHHHcCC-CcCCc----C----EEEEEeccCC---------C---------------CCCcHHHHHHHH
Q 012253 57 VISMSLTVVTSLLEKYKI-DPTQI----G----RLEVGSETVI---------D---------------KSKSIKTFLMQI 103 (467)
Q Consensus 57 ~~~ma~~Aa~~aL~~agi-~~~~I----d----~Li~~Tes~~---------~---------------~~ps~a~~v~~~ 103 (467)
...|++.++.++|+++|+ +|.++ + .+++|+..+. + ..-.++.+|...
T Consensus 1211 ~~~l~L~aa~eAL~dAGi~dp~e~~~~i~~s~vGv~vGs~~gg~~~~~~~~~~~~~~~~v~~~~~~~~~~n~~aa~is~~ 1290 (1887)
T 2uv8_A 1211 ITLFVLVSVVEAFIASGITDPYEMYKYVHVSEVGNCSGSGMGGVSALRGMFKDRFKDEPVQNDILQESFINTMSAWVNML 1290 (1887)
T ss_dssp HHHHHHHHHHHHHHHTTCSSGGGHHHHSCGGGEEECCEESSCCHHHHHHHHTTTTTTCCCCTTHHHHHSTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCChhhhhcccCCceeEEEeccCCccHHHHHHHHHHHHhcCCCCcchhhcchhhHHHHHHHHH
Confidence 456899999999999999 47662 2 5556665332 0 012356678874
Q ss_pred -hcccCCCCeeEEeeCCcChHHHHHHHHHHHHHHhCCCCCCEEEEEEeecc
Q 012253 104 -FEKYGNTDIEGVDSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDSA 153 (467)
Q Consensus 104 -Lgl~G~~~~~~~di~~aC~gg~~AL~~A~~~l~a~~~~~~~aLVV~sD~~ 153 (467)
||+.| .++-+..||++++.||..|++.|++|.+ +.+||.++|..
T Consensus 1291 ~lgl~G----P~~tv~tACASsl~Al~~A~~~I~sG~a--dvaLvGGvd~~ 1335 (1887)
T 2uv8_A 1291 LISSSG----PIKTPVGACATSVESVDIGVETILSGKA--RICIVGGYDDF 1335 (1887)
T ss_dssp TTCCCS----CCCCCCCGGGHHHHHHHHHHHHHHTTSC--SEEEEEEEECC
T ss_pred HcCCcc----ceEEeecccccHHHHHHHHHHHHHcCCC--CEEEEeeeccC
Confidence 88744 3556789999999999999999999977 99999999974
|
| >2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; 3.1A {Thermomyces lanuginosus} PDB: 2uvb_A* | Back alignment and structure |
|---|
Probab=97.59 E-value=0.00058 Score=80.77 Aligned_cols=91 Identities=19% Similarity=0.118 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHHHHHcCCC-cCCc----C----EEEEEeccCC-------------------CC-----CCcHHHHHHH-
Q 012253 57 VISMSLTVVTSLLEKYKID-PTQI----G----RLEVGSETVI-------------------DK-----SKSIKTFLMQ- 102 (467)
Q Consensus 57 ~~~ma~~Aa~~aL~~agi~-~~~I----d----~Li~~Tes~~-------------------~~-----~ps~a~~v~~- 102 (467)
...|++.++.++|+++|++ |.++ + .+++||..+. +. .-.++++|..
T Consensus 1186 ~~~l~L~aa~eAL~~AGi~~p~e~~~~i~~s~vGv~vGsg~gg~~~~~~~~~~~~~~~~v~~~~~~~~~~n~~aa~vs~~ 1265 (1878)
T 2uv9_A 1186 VTLYVLVSVAEALLSSGITDPYEFYKYVHLSEVGNCIGSGVGGTSALRGMYKDRYLDKPVQKDILQESFVNTMAAWVNML 1265 (1878)
T ss_dssp HHHHHHHHHHHHHHTTTCSSGGGHHHHSCGGGEEEEEEESSCCHHHHHHHHTTTTTTCCCCSCTTGGGSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCChhhhhcccCccceEEEEccCCccHHHHHHHHHHHHhcCCCCchhhhcchHHHHHHHHHHH
Confidence 3568999999999999998 7662 2 5666665442 00 1125668887
Q ss_pred HhcccCCCCeeEEeeCCcChHHHHHHHHHHHHHHhCCCCCCEEEEEEeecc
Q 012253 103 IFEKYGNTDIEGVDSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDSA 153 (467)
Q Consensus 103 ~Lgl~G~~~~~~~di~~aC~gg~~AL~~A~~~l~a~~~~~~~aLVV~sD~~ 153 (467)
.||+.| .++-+..||++++.||..|++.|++|.+ +.+||.+.|..
T Consensus 1266 ~lg~~G----P~~tv~tACASsl~Al~~A~~~I~sG~a--dvalvGGvd~~ 1310 (1878)
T 2uv9_A 1266 LLSSTG----PIKTPVGACATAVESLDVGYDTIMQGKA--RVCLVGGFDDF 1310 (1878)
T ss_dssp TCCCCC----CBCCBCCGGGHHHHHHHHHHHHHTTTSC--SEEEEEEEECC
T ss_pred hcCCCC----CeEEEcCcchHHHHHHHHHHHHHHcCCC--CEEEEeeeccC
Confidence 488744 3556789999999999999999999977 99999999974
|
| >2vu1_A Acetyl-COA acetyltransferase; acyltransferase, PHB biosynthesis, thiolase FOL; HET: CSO OPI; 1.51A {Zoogloea ramigera} PDB: 1nl7_A* 1ou6_A* 2vu0_A* 1m4s_A* 2vu2_A* 2wkv_A* 2wku_A* 1m1t_A 1m3k_A 1m1o_A 1m3z_A* 2vtz_A* 2wl5_A* 2wkt_A* 2wl4_A* 1m4t_A* 2wl6_A 1qfl_A* 1dlv_A* 1dlu_A* ... | Back alignment and structure |
|---|
Probab=91.91 E-value=0.66 Score=46.56 Aligned_cols=127 Identities=15% Similarity=0.126 Sum_probs=69.7
Q ss_pred eehhHHhhhhCCCc-CeeEEeccceEeeccCCCCCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEeccCCCCCCcHHHHHH
Q 012253 23 VLQEALEVHDGVSK-GKYTVGLGQDCMAFCSEVEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLM 101 (467)
Q Consensus 23 v~~~el~~~~g~~~-~k~~~Gig~r~~av~~~~Ed~~~ma~~Aa~~aL~~agi~~~~Id~Li~~Tes~~~~~ps~a~~v~ 101 (467)
+..++-++.+|..+ .++ .|.+.... .+... ..-...|++++|+++|++|+|||.+.+. +.....+-.+.
T Consensus 258 L~s~~~A~~~g~~~~a~i-~g~~~~~~---~p~~~-~~~~~~a~~~al~~agl~~~dId~ie~~-----d~f~~~~l~~~ 327 (392)
T 2vu1_A 258 LMSEAEASRRGIQPLGRI-VSWATVGV---DPKVM-GTGPIPASRKALERAGWKIGDLDLVEAN-----EAFAAQACAVN 327 (392)
T ss_dssp EEEHHHHHHHTCCCSEEE-EEEEEEEC---CGGGG-GGTHHHHHHHHHHHHTCCGGGCSEEEEC-----CSBHHHHHHHH
T ss_pred EecHHHHHhcCCCccEEE-EEEEEeec---Chhhc-chhHHHHHHHHHHHcCCCHHHcCEEEec-----cccHHHHHHHH
Confidence 44455566667665 333 35554431 11111 1123578999999999999999999963 33334444467
Q ss_pred HHhcccCCCCe--e--EEeeCC--cChHHHHHHHHHHHHHHhCCCCCCEEEEEEeecccccCCCCCCccccceeEEEecC
Q 012253 102 QIFEKYGNTDI--E--GVDSTN--ACYGGTAALFNCVNWVESASWDGRYGLVVCTDSAVYAEGPARPTGGAAAVAMLIGP 175 (467)
Q Consensus 102 ~~Lgl~G~~~~--~--~~di~~--aC~gg~~AL~~A~~~l~a~~~~~~~aLVV~sD~~~y~~~~~~~t~GdGAvA~Ll~~ 175 (467)
+.||+.. +.+ . ..-+.+ +++| +..+..+...|+.. +++++|+..+- +|..+.|+||+.
T Consensus 328 ~~lg~~~-~~vn~~gg~~~~GHp~gAsG-~~~~~~~~~~L~~~--~~~~gl~~~~~------------ggG~~~a~~~e~ 391 (392)
T 2vu1_A 328 KDLGWDP-SIVNVNGGAIAIGHPIGASG-ARILNTLLFEMKRR--GARKGLATLCI------------GGGMGVAMCIES 391 (392)
T ss_dssp HHHCCCG-GGBSTTCCHHHHCCCGGGHH-HHHHHHHHHHHHHH--TCSEEEEEEEE------------TTTEEEEEEEEC
T ss_pred HHcCCCc-ccCCCCccHhhhCCChhhHH-HHHHHHHHHHHhcc--CCCEEEEEEec------------ccchheEEEEEe
Confidence 8888721 111 1 111222 3444 44444444556655 44788875432 344556777764
|
| >3svk_A Acetyl-COA acetyltransferase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.20A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=91.25 E-value=1.1 Score=45.17 Aligned_cols=76 Identities=12% Similarity=0.079 Sum_probs=45.7
Q ss_pred eeehhHHhhhhCCCcCeeEEeccceEeeccCCCCCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEeccCCCCCCcHHHHHH
Q 012253 22 CVLQEALEVHDGVSKGKYTVGLGQDCMAFCSEVEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLM 101 (467)
Q Consensus 22 ~v~~~el~~~~g~~~~k~~~Gig~r~~av~~~~Ed~~~ma~~Aa~~aL~~agi~~~~Id~Li~~Tes~~~~~ps~a~~v~ 101 (467)
.+..++.++.+|..+--...|.+.... ++... .+-...|++++|+++|++|+|||.+.+. +..........
T Consensus 272 vL~s~~~A~~~g~~~~a~i~g~~~~~~---~p~~~-~~~~~~a~~~al~~Agl~~~dId~~e~h-----daf~~~~l~~~ 342 (407)
T 3svk_A 272 LVGSEKAGKSQGLTPRARIVATATSGS---DPVIM-LTGPTPATRKVLDRAGLTIDDIDLFELN-----EAFASVVLKFQ 342 (407)
T ss_dssp EEECHHHHHHTTCCCCEEEEEEEEC---------C-CCTHHHHHHHHHHHHTCCGGGCSEEEEC-----CSBHHHHHHHH
T ss_pred EEeeHHHHHHcCCCCcEEEEEEEEecc---CCccc-cHHHHHHHHHHHHHcCCCHHHCCEEEEe-----ChhHHHHHHHH
Confidence 456677777788766332234443321 11111 1123578999999999999999999973 22223344566
Q ss_pred HHhcc
Q 012253 102 QIFEK 106 (467)
Q Consensus 102 ~~Lgl 106 (467)
+.||+
T Consensus 343 ~~lg~ 347 (407)
T 3svk_A 343 KDLNI 347 (407)
T ss_dssp HHHTC
T ss_pred HHhCC
Confidence 77886
|
| >4dd5_A Acetyl-COA acetyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, thiolase; 1.25A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=91.15 E-value=0.8 Score=46.07 Aligned_cols=94 Identities=15% Similarity=0.239 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHcCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHhcccCC-CCeeEE--eeCC--cChHHHHHHHHHHHHH
Q 012253 61 SLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGN-TDIEGV--DSTN--ACYGGTAALFNCVNWV 135 (467)
Q Consensus 61 a~~Aa~~aL~~agi~~~~Id~Li~~Tes~~~~~ps~a~~v~~~Lgl~G~-~~~~~~--di~~--aC~gg~~AL~~A~~~l 135 (467)
...|++++|+++|++|+|||.+.+. +........+.+.||+... -++.+. -+.+ +|+| +..+-.+...|
T Consensus 297 ~~~a~~~al~~Agl~~~dId~ve~~-----d~f~~~~~~~~~~lg~~~~~~n~~gg~~~~GH~~gasG-~~~~~~~~~~L 370 (396)
T 4dd5_A 297 PVPATKKALEAANMTIEDIDLVEAN-----EAFAAQSVAVIRDLNIDMNKVNVNGGAIAIGHPIGCSG-ARILTTLLYEM 370 (396)
T ss_dssp HHHHHHHHHHHHTCCGGGCSEEEEC-----CSBHHHHHHHHHHHTCCTTSBSTTCCHHHHCCCHHHHH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHcCEEEec-----ChHHHHHHHHHHHhCCCCCccCCCCchhhccCcHHHHH-HHHHHHHHHHH
Confidence 4678999999999999999999962 2233455567788886210 011111 1222 3333 44444445555
Q ss_pred HhCCCCCCEEEEEEeecccccCCCCCCccccceeEEEec
Q 012253 136 ESASWDGRYGLVVCTDSAVYAEGPARPTGGAAAVAMLIG 174 (467)
Q Consensus 136 ~a~~~~~~~aLVV~sD~~~y~~~~~~~t~GdGAvA~Ll~ 174 (467)
+.. .++++|+-.+- +|..++|+||+
T Consensus 371 ~~~--~~~~gl~~~c~------------ggG~g~a~~~e 395 (396)
T 4dd5_A 371 KRR--DAKTGLATLCI------------GGGMGTTLIVK 395 (396)
T ss_dssp HHH--TCSEEEEEEEE------------TTTEEEEEEEE
T ss_pred Hhc--CCCeEEEEEcc------------cCCceeEEEEe
Confidence 555 34788876543 45566777775
|
| >4e1l_A Acetoacetyl-COA thiolase 2; 3-layer(ABA) sandwich, transferase; 2.00A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=91.13 E-value=1.8 Score=43.42 Aligned_cols=94 Identities=13% Similarity=0.215 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHcCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHhcccCC-CCeeE--EeeCC--cChHHHHHHHHHHHHH
Q 012253 61 SLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGN-TDIEG--VDSTN--ACYGGTAALFNCVNWV 135 (467)
Q Consensus 61 a~~Aa~~aL~~agi~~~~Id~Li~~Tes~~~~~ps~a~~v~~~Lgl~G~-~~~~~--~di~~--aC~gg~~AL~~A~~~l 135 (467)
...|++++|+++|++|+|||.+++. +........+.+.||+... -++.+ .-+.+ +|+|... +..+...|
T Consensus 296 ~~~ai~~al~~agl~~~dId~ve~~-----d~fa~~~~~~~~~lg~~~~~v~~~gg~~~~Gh~~gasG~~~-~~~~~~~L 369 (395)
T 4e1l_A 296 PIPATRKALKKAGLSINDIDLIEAN-----EAFAAQALAVKNELQIDSSKLNVNGGAIALGHPIGASGARI-LVTLIYEM 369 (395)
T ss_dssp HHHHHHHHHHHTTCCGGGCSEEEEC-----CSBHHHHHHHHHHHTCCGGGBSTTCCHHHHCCCTTTHHHHH-HHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHcCEEEec-----ChhHHHHHHHHHHhCCCCCCCCcCCchhhcCCcHHHHHHHH-HHHHHHHH
Confidence 3578999999999999999999962 3233555677888886210 01111 11222 4555444 44444445
Q ss_pred HhCCCCCCEEEEEEeecccccCCCCCCccccceeEEEec
Q 012253 136 ESASWDGRYGLVVCTDSAVYAEGPARPTGGAAAVAMLIG 174 (467)
Q Consensus 136 ~a~~~~~~~aLVV~sD~~~y~~~~~~~t~GdGAvA~Ll~ 174 (467)
+.. .+++.|+..+- +|-.+.|+||+
T Consensus 370 ~~~--~~~~gl~~~c~------------ggG~g~a~~~e 394 (395)
T 4e1l_A 370 QKR--KVETGLATLCI------------GGGQGISMVVS 394 (395)
T ss_dssp HHH--TCSEEEEEEES------------STTEEEEEEEE
T ss_pred Hhc--CCCEEEEEEcc------------CCCceEEEEEe
Confidence 554 33787775432 45556777765
|
| >3lma_A Stage V sporulation protein AD (spovad); NESG, structural genomics, PSI-2, protein structure initiative; 1.99A {Bacillus licheniformis} PDB: 3lm6_A | Back alignment and structure |
|---|
Probab=90.95 E-value=0.67 Score=45.76 Aligned_cols=87 Identities=20% Similarity=0.122 Sum_probs=54.6
Q ss_pred HHHHHHHHH---HHHHHHcCCCcCCcCEEEEEeccCCCCCC---cHHHHHHHHhcccCCC-------CeeEEee-CC---
Q 012253 57 VISMSLTVV---TSLLEKYKIDPTQIGRLEVGSETVIDKSK---SIKTFLMQIFEKYGNT-------DIEGVDS-TN--- 119 (467)
Q Consensus 57 ~~~ma~~Aa---~~aL~~agi~~~~Id~Li~~Tes~~~~~p---s~a~~v~~~Lgl~G~~-------~~~~~di-~~--- 119 (467)
-..|+-.|+ .+.|+++|++|+|+|+|+.+ |... .+...|.+++|+ +. .+.-||- ++
T Consensus 202 g~amaPaA~~ti~~~l~d~g~~~~d~D~ivtg-----dL~q~g~~il~~l~~~~g~--~~~~~~~dcg~~iy~~~~~~~~ 274 (347)
T 3lma_A 202 GSAMAPAAADTIKQHLEDLGRTPDDYDLILTG-----DLSGVGSPILKDLLKEEGI--NVGTKHNDCGLMIYTPDQQVFA 274 (347)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCGGGCSEEEEE-----SCHHHHHHHHHHHHHHTTC--CCGGGEEEGGGTSSCC------
T ss_pred cccchHHHHHHHHHHHHHhCCCHHHcCEEecC-----ChHHHHHHHHHHHHHHcCC--ChhHCccccceEEecCCCcccC
Confidence 455666565 88999999999999999974 2222 234455555555 21 1122332 24
Q ss_pred -----cChHHHHHHHHHHHHHHhCCCCCCEEEEEEeecc
Q 012253 120 -----ACYGGTAALFNCVNWVESASWDGRYGLVVCTDSA 153 (467)
Q Consensus 120 -----aC~gg~~AL~~A~~~l~a~~~~~~~aLVV~sD~~ 153 (467)
||++.+..=.+- ..|+.|.+ +++|+|++-..
T Consensus 275 ggsg~~csa~v~~~~~~-~~~~~g~~--~ril~~~tGal 310 (347)
T 3lma_A 275 GGSGCACSAVVTFAHIF-KEIEAGRL--NRVLVVATGAL 310 (347)
T ss_dssp ---CCCCHHHHHHHTHH-HHHHTTSC--SEEEEEEEEEC
T ss_pred CCCccccHHHHHHHHHH-HHHhcCcc--cEEEEEecccc
Confidence 666655444333 44788977 99999998765
|
| >1ulq_A Putative acetyl-COA acetyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 3.00A {Thermus thermophilus} SCOP: c.95.1.1 c.95.1.1 | Back alignment and structure |
|---|
Probab=90.44 E-value=1.3 Score=44.47 Aligned_cols=126 Identities=10% Similarity=0.128 Sum_probs=67.4
Q ss_pred eehhHHhhhhCCCc-CeeEEeccceEeeccCCCCCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEeccCCCCCCcHHHHHH
Q 012253 23 VLQEALEVHDGVSK-GKYTVGLGQDCMAFCSEVEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLM 101 (467)
Q Consensus 23 v~~~el~~~~g~~~-~k~~~Gig~r~~av~~~~Ed~~~ma~~Aa~~aL~~agi~~~~Id~Li~~Tes~~~~~ps~a~~v~ 101 (467)
|..++-++.+|..+ .++ .|.+...- .+... ..-...|++++|+++|++|+|||.+... +..........
T Consensus 264 L~s~~~A~~~g~~~~a~i-~g~~~~~~---~p~~~-~~~~~~a~~~al~~Agl~~~dId~ie~h-----eafa~~~l~~~ 333 (401)
T 1ulq_A 264 LVSDDYAKAHGLRPLARV-RAIAVAGV---PPRIM-GIGPVPATRKALERAGLSFSDLGLIELN-----EAFAAQALAVL 333 (401)
T ss_dssp EEEHHHHHHTTCCCSEEE-EEEEEEEC---CGGGG-GGTHHHHHHHHHHHTTCCGGGCSEEEEC-----CSBHHHHHHHH
T ss_pred EecHHHHHHcCCCceEEE-EEEEEecC---Ccccc-chhHHHHHHHHHHHcCCCHHHcCEEEEe-----cchHHHHHHHH
Confidence 44556666677666 333 35554431 11111 1223689999999999999999999974 11112223334
Q ss_pred HHhcccCCCCeeEEe-------eCC--cChHHHHHHHHHHHHHHhCCCCCCEEEEEEeecccccCCCCCCccccceeEEE
Q 012253 102 QIFEKYGNTDIEGVD-------STN--ACYGGTAALFNCVNWVESASWDGRYGLVVCTDSAVYAEGPARPTGGAAAVAML 172 (467)
Q Consensus 102 ~~Lgl~G~~~~~~~d-------i~~--aC~gg~~AL~~A~~~l~a~~~~~~~aLVV~sD~~~y~~~~~~~t~GdGAvA~L 172 (467)
+.||+.. +-.-+. +.+ +++ |+..+..+...|+.+ +.+++|+..+- +|-..+|+|
T Consensus 334 ~~lg~~~--~~~~vn~~Gg~~a~GHp~gAs-G~~~~~~~~~~L~~~--~~~~gl~~~~~------------ggG~~~a~v 396 (401)
T 1ulq_A 334 REWSLSM--EDQRLNPNGGAIALGHPLGAS-GARILTTLVHEMRRR--KVQFGLATMCI------------GVGQGIAVV 396 (401)
T ss_dssp HHHTCCT--TCTTBSTTCCHHHHCCCHHHH-HHHHHHHHHHHHHHT--TCSEEEEEEEE------------TTTEEEEEE
T ss_pred HHcCCCC--CCCccCCCCcccccCCCcchH-HHHHHHHHHHHHhhc--CCCEEEEEeec------------CCcccEEEE
Confidence 5577621 111112 222 333 344444455556666 44888876432 344456777
Q ss_pred ecC
Q 012253 173 IGP 175 (467)
Q Consensus 173 l~~ 175 (467)
|++
T Consensus 397 ~~~ 399 (401)
T 1ulq_A 397 VEG 399 (401)
T ss_dssp EEE
T ss_pred EEe
Confidence 754
|
| >1wl4_A Acetyl-coenzyme A acetyltransferase 2; thiolase fold; HET: COA; 1.55A {Homo sapiens} PDB: 1wl5_A | Back alignment and structure |
|---|
Probab=90.09 E-value=0.89 Score=45.72 Aligned_cols=128 Identities=12% Similarity=0.175 Sum_probs=67.8
Q ss_pred eehhHHhhhhCCCc-CeeEEeccceEeeccCCCCCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEeccCCCCCCcHHHHHH
Q 012253 23 VLQEALEVHDGVSK-GKYTVGLGQDCMAFCSEVEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLM 101 (467)
Q Consensus 23 v~~~el~~~~g~~~-~k~~~Gig~r~~av~~~~Ed~~~ma~~Aa~~aL~~agi~~~~Id~Li~~Tes~~~~~ps~a~~v~ 101 (467)
+..++.++.+|..+ .++ .|.+.... .++. ...-...|++++|+++|++|+|||.+.+. +........+.
T Consensus 263 L~s~~~A~~~g~~~~a~i-~g~~~~~~---~p~~-~~~~~~~a~~~al~~Agl~~~dId~ie~~-----d~f~~~~l~~~ 332 (397)
T 1wl4_A 263 LMKKSEADKRGLTPLARI-VSWSQVGV---EPSI-MGIGPIPAIKQAVTKAGWSLEDVDIFEIN-----EAFAAVSAAIV 332 (397)
T ss_dssp EEEHHHHHHTTCCCSEEE-EEEEEEEC---CGGG-GGGTHHHHHHHHHHHHTCCGGGCCEEEEC-----CSBHHHHHHHH
T ss_pred EecHHHHHHcCCCccEEE-EEEEEeec---Chhh-ccchHHHHHHHHHHHcCCCHHHCCEEEEe-----cccHHHHHHHH
Confidence 33445555566555 333 35554431 1111 11223689999999999999999999953 22333445678
Q ss_pred HHhcccCC-CCee--EEeeCC--cChHHHHHHHHHHHHHHhCCCCCCEEEEEEeecccccCCCCCCccccceeEEEecC
Q 012253 102 QIFEKYGN-TDIE--GVDSTN--ACYGGTAALFNCVNWVESASWDGRYGLVVCTDSAVYAEGPARPTGGAAAVAMLIGP 175 (467)
Q Consensus 102 ~~Lgl~G~-~~~~--~~di~~--aC~gg~~AL~~A~~~l~a~~~~~~~aLVV~sD~~~y~~~~~~~t~GdGAvA~Ll~~ 175 (467)
+.||+... -++. ..-+.+ +++| +..+..+...|+.. +++++|+..+- +|-.+.|+||+.
T Consensus 333 ~~lg~~~~~vn~~gg~~~~GHp~gAsG-~~~~~~~~~~L~~~--~~~~gl~~~~~------------ggG~~~a~~~e~ 396 (397)
T 1wl4_A 333 KELGLNPEKVNIEGGAIALGHPLGASG-CRILVTLLHTLERM--GRSRGVAALCI------------GGGMGIAMCVQR 396 (397)
T ss_dssp HHHTCCGGGBSTTCCHHHHCCCHHHHH-HHHHHHHHHHHHHH--TCCEEEEEEEE------------TTTEEEEEEEEE
T ss_pred HHcCCCCcCcCCCcCccccCCChhhhH-HHHHHHHHHHHhhc--CCCEEEEEEec------------ccchheEEEEEe
Confidence 88886210 0111 111122 3333 33444444555554 34788876432 233446888764
|
| >3goa_A 3-ketoacyl-COA thiolase; metabolism, fatty acid, phospholipid, IDP01071, acyltransferase, cytoplasm, fatty acid metabolism; 1.70A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=89.81 E-value=1.4 Score=44.03 Aligned_cols=128 Identities=13% Similarity=0.095 Sum_probs=68.1
Q ss_pred eehhHHhhhhCCCcCeeEEeccceEeeccCCCCCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEeccCCCCCCcHHHHHHH
Q 012253 23 VLQEALEVHDGVSKGKYTVGLGQDCMAFCSEVEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQ 102 (467)
Q Consensus 23 v~~~el~~~~g~~~~k~~~Gig~r~~av~~~~Ed~~~ma~~Aa~~aL~~agi~~~~Id~Li~~Tes~~~~~ps~a~~v~~ 102 (467)
+..++.++.+|..+--...|.+...- .+... .+-...|++++|+++|++|+|||.+.+.- ..........+
T Consensus 250 L~s~~~A~~~g~~~~a~i~g~~~~~~---~~~~~-~~~~~~a~~~al~~agl~~~did~ve~h~-----~f~~~~~~~~~ 320 (387)
T 3goa_A 250 VMSESRARELGLKPRARIRSMAVVGC---DPSIM-GYGPVPASKLALKKAGLSASDIDVFEMNE-----AFAAQILPCIK 320 (387)
T ss_dssp EEEHHHHHHTTCCCCEEEEEEEEEEC---CTTST-TCTHHHHHHHHHHHHTCCGGGCSEEEECC-----SBHHHHHHHHH
T ss_pred EecHHHHHHcCCCccEEEEEEEEcCC---CCCcc-hHHHHHHHHHHHHHcCCCHHHcCEEEEeC-----cchHHHHHHHH
Confidence 45556666666655322335444331 12211 11236889999999999999999999631 12223445566
Q ss_pred HhcccCCCCeeEEe-------eCC--cChHHHHHHHHHHHHHHhCCCCCCEEEEEEeecccccCCCCCCccccceeEEEe
Q 012253 103 IFEKYGNTDIEGVD-------STN--ACYGGTAALFNCVNWVESASWDGRYGLVVCTDSAVYAEGPARPTGGAAAVAMLI 173 (467)
Q Consensus 103 ~Lgl~G~~~~~~~d-------i~~--aC~gg~~AL~~A~~~l~a~~~~~~~aLVV~sD~~~y~~~~~~~t~GdGAvA~Ll 173 (467)
.||+.+ +...-+. +.+ +++ |+..+..+...|+.. ++++.|+..+= +|..++|+||
T Consensus 321 ~lg~~~-~~~~~vn~~gg~~~~GH~~gas-G~~~~~~~~~~L~~~--~~~~gl~~~c~------------ggG~g~a~~~ 384 (387)
T 3goa_A 321 DLGLME-QIDEKINLNGGAIALGHPLGCS-GARISTTLINLMERK--DAQFGLATMCI------------GLGQGIATVF 384 (387)
T ss_dssp HTTCGG-GHHHHBSTTCCHHHHCCCHHHH-HHHHHHHHHHHHHHT--TCSEEEEEEEE------------TTTEEEEEEE
T ss_pred HhCCCc-CCCccCCCCCchhcccCCHHHH-HHHHHHHHHHHHHhc--CCCEEEEEecc------------CcCceEEEEE
Confidence 677521 0111112 122 233 344444445556554 44788874331 3455677777
Q ss_pred cC
Q 012253 174 GP 175 (467)
Q Consensus 174 ~~ 175 (467)
++
T Consensus 385 e~ 386 (387)
T 3goa_A 385 ER 386 (387)
T ss_dssp EC
T ss_pred Ee
Confidence 64
|
| >3ss6_A Acetyl-COA acetyltransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha beta; HET: CSO; 1.70A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=88.87 E-value=1.2 Score=44.59 Aligned_cols=93 Identities=16% Similarity=0.237 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHcCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHhcccCCCC-e--eE--EeeCC--cChHHHHHHHHHHH
Q 012253 61 SLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTD-I--EG--VDSTN--ACYGGTAALFNCVN 133 (467)
Q Consensus 61 a~~Aa~~aL~~agi~~~~Id~Li~~Tes~~~~~ps~a~~v~~~Lgl~G~~~-~--~~--~di~~--aC~gg~~AL~~A~~ 133 (467)
...|++++|+++|++|+|||.+.+. +........+.+.||+ .+. + .+ .-+.+ +|+ |+..+..+..
T Consensus 294 ~~~a~~~al~~agl~~~dId~ve~~-----d~fa~~~~~~~~~lg~--~~~~v~~~gg~~~~GH~~gas-G~~~~~~~~~ 365 (394)
T 3ss6_A 294 PAPAIRKGLEKVDWSLEDADLLEIN-----EAFAAQYLAVEKELDL--DREKVNVNGSGVGLGHPIGCT-GARITVSLIH 365 (394)
T ss_dssp HHHHHHHHHHHHTCCGGGCSEEEEC-----CSBHHHHHHHHHHHTC--CGGGBSTTCCHHHHCCCHHHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHcCEEEeC-----CchHHHHHHHHHHhCC--CCCCCCCCcchHhhCCcHHHH-HHHHHHHHHH
Confidence 3678999999999999999999963 2233556677888886 221 1 11 11222 233 3444444555
Q ss_pred HHHhCCCCCCEEEEEEeecccccCCCCCCccccceeEEEecC
Q 012253 134 WVESASWDGRYGLVVCTDSAVYAEGPARPTGGAAAVAMLIGP 175 (467)
Q Consensus 134 ~l~a~~~~~~~aLVV~sD~~~y~~~~~~~t~GdGAvA~Ll~~ 175 (467)
.|+.. +++++|+..+- +|-.+.|+||++
T Consensus 366 ~L~~~--~~~~gl~~~c~------------ggG~g~a~~~e~ 393 (394)
T 3ss6_A 366 ELKRR--GLEKGIASLCV------------GGGIGVALFIEA 393 (394)
T ss_dssp HHHHH--TCCEEEEEEEE------------TTTEEEEEEEEE
T ss_pred HHHhc--CCCEEEEEEcc------------CcCceeEEEEEc
Confidence 55555 34788775432 344556677653
|
| >1wdk_C 3-ketoacyl-COA thiolase; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: c.95.1.1 c.95.1.1 PDB: 1wdl_C* 1wdm_C* 2d3t_C* | Back alignment and structure |
|---|
Probab=88.06 E-value=2 Score=42.93 Aligned_cols=129 Identities=10% Similarity=0.122 Sum_probs=66.9
Q ss_pred eehhHHhhhhCCCcCeeEEeccceEeeccCCCCCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEeccCCCCCCcHHHHHHH
Q 012253 23 VLQEALEVHDGVSKGKYTVGLGQDCMAFCSEVEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQ 102 (467)
Q Consensus 23 v~~~el~~~~g~~~~k~~~Gig~r~~av~~~~Ed~~~ma~~Aa~~aL~~agi~~~~Id~Li~~Tes~~~~~ps~a~~v~~ 102 (467)
+..++-++.+|..+--...|.+.... .++.. ..-...|++++|+++|++|+|||.+.+. +........+.+
T Consensus 253 L~s~~~A~~~g~~~~a~I~g~~~~~~---~p~~~-~~~~~~a~~~al~~Agl~~~dId~ve~~-----d~f~~~~~~~~~ 323 (390)
T 1wdk_C 253 VMSAQRAKDLGLEPLAVIRSMAVAGV---DPAIM-GYGPVPATQKALKRAGLNMADIDFIELN-----EAFAAQALPVLK 323 (390)
T ss_dssp EEEHHHHHHTTCCCSEEEEEEEEEEC---CGGGG-GGTHHHHHHHHHHHHTCCGGGCCEEEEC-----CSBHHHHHHHHH
T ss_pred EecHHHHHHcCCCccEEEEEEEEecc---Chhhc-chhHHHHHHHHHHHcCCChhhCcEEEec-----cCCHHHHHHHHH
Confidence 44455555566555222235554431 11111 1123579999999999999999999853 112223445667
Q ss_pred HhcccC----CCCee--EEeeCC--cChHHHHHHHHHHHHHHhCCCCCCEEEEEEeecccccCCCCCCccccceeEEEec
Q 012253 103 IFEKYG----NTDIE--GVDSTN--ACYGGTAALFNCVNWVESASWDGRYGLVVCTDSAVYAEGPARPTGGAAAVAMLIG 174 (467)
Q Consensus 103 ~Lgl~G----~~~~~--~~di~~--aC~gg~~AL~~A~~~l~a~~~~~~~aLVV~sD~~~y~~~~~~~t~GdGAvA~Ll~ 174 (467)
.||+.. +-++. ..-+.+ +++ |+..+..+...|+.+ +++++|+..+- +|..++|+||+
T Consensus 324 ~lg~~~~~~~~vn~~gg~~~~GHp~gas-G~~~~~~~~~~L~~~--~~~~gl~~~~~------------ggG~~~a~~~~ 388 (390)
T 1wdk_C 324 DLKVLDKMNEKVNLHGGAIALGHPFGCS-GARISGTLLNVMKQN--GGTFGLSTMCI------------GLGQGIATVFE 388 (390)
T ss_dssp HTTCGGGHHHHBSTTCCHHHHCCCHHHH-HHHHHHHHHHHHHHT--TCSEEEEEEEE------------TTTEEEEEEEE
T ss_pred HcCCCCCCCCcCCCCcCcccccCCcchh-HHHHHHHHHHHHhhc--CCCEEEEEecc------------cchheEEEEEE
Confidence 777620 00111 111222 233 333444445556655 45788775432 23446777776
Q ss_pred C
Q 012253 175 P 175 (467)
Q Consensus 175 ~ 175 (467)
.
T Consensus 389 ~ 389 (390)
T 1wdk_C 389 R 389 (390)
T ss_dssp C
T ss_pred e
Confidence 4
|
| >4egv_A Acetyl-COA acetyltransferase; NEW SUB-family, thiolase fold; 2.71A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=85.54 E-value=3.9 Score=42.64 Aligned_cols=121 Identities=12% Similarity=0.000 Sum_probs=74.2
Q ss_pred eeehhHHhhhhCCCcCe-eE-EeccceE-eec-cCCCCCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEeccCCCCCCcHH
Q 012253 22 CVLQEALEVHDGVSKGK-YT-VGLGQDC-MAF-CSEVEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIK 97 (467)
Q Consensus 22 ~v~~~el~~~~g~~~~k-~~-~Gig~r~-~av-~~~~Ed~~~ma~~Aa~~aL~~agi~~~~Id~Li~~Tes~~~~~ps~a 97 (467)
.|..++.++..|+.|.. +. .|..... ..+ ..++.....-...|++++|+++|++++|||.+.+- +-.+...
T Consensus 276 VL~S~e~A~~lGl~p~a~I~~~a~a~~~~~~~~~~~~~~~~~~~~~a~~~al~~agl~~~did~~E~~-----dAF~~~~ 350 (520)
T 4egv_A 276 LMMSVESARKLGVPEEKWVYLRGHADMKEPKLLERADIGASPASVTAVNEALRVAGIGLDDVAAFDLY-----SCFPFPV 350 (520)
T ss_dssp EEEEHHHHHHHTCCGGGCEEEEEEEEEECCCGGGCSCTTCCHHHHHHHHHHHHHHTCCGGGEEEEEEC-----CSSSHHH
T ss_pred EEeeHHHHHHcCCCCceEEEEEEEeccCCcccccccccccChHHHHHHHHHHHHhCCCHHHCCEEEEe-----CCcHHHH
Confidence 46677888888887743 32 2222111 000 01111123345678999999999999999999985 3456677
Q ss_pred HHHHHHhcccCC--C--CeeE--EeeCC-cChHHHHHHHHHHHHHHhCCCCCCEEEEEE
Q 012253 98 TFLMQIFEKYGN--T--DIEG--VDSTN-ACYGGTAALFNCVNWVESASWDGRYGLVVC 149 (467)
Q Consensus 98 ~~v~~~Lgl~G~--~--~~~~--~di~~-aC~gg~~AL~~A~~~l~a~~~~~~~aLVV~ 149 (467)
-...+.||+... . ++.+ .-+++ ..++|+.++.-+...|+.+ .+++.|+.+
T Consensus 351 l~~~~~lG~~~~~~~~~n~~Gg~~~~Ghp~~a~g~~~~~~~v~~lr~~--~~~~~L~~~ 407 (520)
T 4egv_A 351 FNICDGTGLATDDPRGLTLTGGLPFFGGLGNNYSMHGIAEAVNEMRDK--PGQFALVGA 407 (520)
T ss_dssp HHHHHHHCCCTTCTTCSCSSCCHHHHCSCSSSHHHHHHHHHHHHHHHS--TTCEEEEEE
T ss_pred HHHHHHhCCCCCCCCCcCCCcccccCCChHHHHHHHHHHHHHHHHhcC--CCCceEEeC
Confidence 788889997311 1 1110 11232 3445677777777788888 668999864
|
| >1u6e_A 3-oxoacyl-[acyl-carrier-protein] synthase III; transferase; 1.85A {Mycobacterium tuberculosis} SCOP: c.95.1.2 c.95.1.2 PDB: 1u6s_A* 1m1m_A 1hzp_A* 2qnx_A* 2qnz_A* 2qo1_A* 2qx1_A* 2qo0_A* 2qny_A* 2ahb_A 2aj9_A | Back alignment and structure |
|---|
Probab=84.59 E-value=2.4 Score=41.11 Aligned_cols=82 Identities=13% Similarity=0.126 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHcCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHhcccCCCCeeEEe----eCC-cChHHHHHHHHHHH
Q 012253 59 SMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVD----STN-ACYGGTAALFNCVN 133 (467)
Q Consensus 59 ~ma~~Aa~~aL~~agi~~~~Id~Li~~Tes~~~~~ps~a~~v~~~Lgl~G~~~~~~~d----i~~-aC~gg~~AL~~A~~ 133 (467)
....++++++|+++|++++|||.++.... .+.+--.+.+.||+ ..+-..+. +.| .+++...+|..+
T Consensus 232 ~~~~~~i~~al~~agl~~~dId~~~~H~~-----~~~~~~~~~~~lg~--~~~~~~~~~~~~~Gnt~sAs~~~~L~~~-- 302 (335)
T 1u6e_A 232 FKMGDVGRRAMDAAGVRPDQIDVFVPHQA-----NSRINELLVKNLQL--RPDAVVANDIEHTGNTSAASIPLAMAEL-- 302 (335)
T ss_dssp HHHHHHHHHHHHHHTCCGGGCCEEEECCS-----CHHHHHHHHHHHTC--CTTCEECCTHHHHCBCGGGHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHcCCCHHHCCEEEECCC-----CHHHHHHHHHHcCC--CchhhhhhhhhhhCcHHHHHHHHHHHHH--
Confidence 45567889999999999999999986432 22334457888987 33311111 222 333333333333
Q ss_pred HHHhCC-CCCCEEEEEEe
Q 012253 134 WVESAS-WDGRYGLVVCT 150 (467)
Q Consensus 134 ~l~a~~-~~~~~aLVV~s 150 (467)
++.+. .+|+++|+++.
T Consensus 303 -~~~~~~~~g~~~l~~~~ 319 (335)
T 1u6e_A 303 -LTTGAAKPGDLALLIGY 319 (335)
T ss_dssp -HHHTSSCTTCEEEEEEE
T ss_pred -HHcCCCCCCCEEEEEEE
Confidence 34442 26788888764
|
| >2ib8_A Acetyl-COA acetyltransferase; thiolase fold, potassium ION, chloride, beta-alpha-beta-ALPH alpha-beta-BETA topology; HET: MES; 1.85A {Homo sapiens} PDB: 2ib7_A* 2ib9_A* 2ibu_A* 2ibw_A* 2iby_A* 2f2s_A* | Back alignment and structure |
|---|
Probab=84.59 E-value=3.6 Score=41.13 Aligned_cols=74 Identities=9% Similarity=0.157 Sum_probs=44.8
Q ss_pred eehhHHhhhhCCCc-CeeEEeccceEeeccCCCCCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEeccCCCCCCcHHHHHH
Q 012253 23 VLQEALEVHDGVSK-GKYTVGLGQDCMAFCSEVEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLM 101 (467)
Q Consensus 23 v~~~el~~~~g~~~-~k~~~Gig~r~~av~~~~Ed~~~ma~~Aa~~aL~~agi~~~~Id~Li~~Tes~~~~~ps~a~~v~ 101 (467)
+..++.++.+|..+ .++ .|.+... . ++.. ...-...|++++|+++|++|+|||.+.+. |.....+-...
T Consensus 263 L~s~~~A~~~g~~~~a~I-~g~~~~~--~-~p~~-~~~~~~~a~~~al~~Agl~~~dId~ie~~-----D~f~~~~l~~~ 332 (395)
T 2ib8_A 263 LMTADAAKRLNVTPLARI-VAFADAA--V-EPID-FPIAPVYAASMVLKDVGLKKEDIAMWEVN-----EAFSLVVLANI 332 (395)
T ss_dssp EEEHHHHHHTTCCCCEEE-EEEEEEE--C-CGGG-GGGHHHHHHHHHHHHHTCCGGGEEEEEEC-----CSBHHHHHHHH
T ss_pred EecHHHHHhcCCCccEEE-EEEEEec--c-Chhh-ccccHHHHHHHHHHHcCCCHHHcCEEEEc-----cccHHHHHHHH
Confidence 55667777778766 344 4555433 1 2211 11224679999999999999999999952 22223333333
Q ss_pred HHhcc
Q 012253 102 QIFEK 106 (467)
Q Consensus 102 ~~Lgl 106 (467)
+.||+
T Consensus 333 e~lg~ 337 (395)
T 2ib8_A 333 KMLEI 337 (395)
T ss_dssp HHHTC
T ss_pred HHcCC
Confidence 44876
|
| >3s3l_A CERJ; acyltransferase, FABH homologue, KS III homologue, dimethyl transfer, transferase; 2.00A {Streptomyces tendae} PDB: 3t5y_A* 3t6s_A* 3t8e_A 3t5y_B* | Back alignment and structure |
|---|
Probab=84.44 E-value=1.2 Score=44.12 Aligned_cols=96 Identities=18% Similarity=0.094 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHHHHcCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHhcccCCCCeeEEee----CC-cChHHHHHHHHH
Q 012253 57 VISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDS----TN-ACYGGTAALFNC 131 (467)
Q Consensus 57 ~~~ma~~Aa~~aL~~agi~~~~Id~Li~~Tes~~~~~ps~a~~v~~~Lgl~G~~~~~~~di----~~-aC~gg~~AL~~A 131 (467)
++....++++++|+++|++++|||.+++-...... .. .+.+.||+ +.+-...++ +| ++++-..+|..+
T Consensus 236 ~~~~~~~~i~~~L~~~gl~~~did~~v~~hq~~~~-~~----~~~~~lgl--~~ek~~~~~~~~~GNt~aAsipl~L~~~ 308 (357)
T 3s3l_A 236 YIDLLVAAKTQALEDAGTAIEDIAHAVIPVSRRGT-GH----ELHDLLGL--PDERTSWAYGRTTGHVGAGDQYAGLAHL 308 (357)
T ss_dssp HHHHHHHHHHHHHHHTTCCGGGCSEEECCSCCCCS-SC----CHHHHHTS--CGGGBTHHHHHHHCBCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCCEEEecCcChHH-HH----HHHHHcCC--CHHHhHHHhccccccchHhHHHHHHHHH
Confidence 34456778999999999999999999963222222 22 46778887 332222233 22 344444555544
Q ss_pred HHHHHhCC-CCCCEEEEEEeecccccCCCCCCccccc--eeEEEecCC
Q 012253 132 VNWVESAS-WDGRYGLVVCTDSAVYAEGPARPTGGAA--AVAMLIGPD 176 (467)
Q Consensus 132 ~~~l~a~~-~~~~~aLVV~sD~~~y~~~~~~~t~GdG--AvA~Ll~~~ 176 (467)
++.|. .+|.++|+++ ||.| ..|+||.-.
T Consensus 309 ---~~~g~l~~Gd~vll~~--------------fG~G~t~~a~ll~~~ 339 (357)
T 3s3l_A 309 ---VENALVQPGDRVLLFG--------------GGAGYTCTAAVVEIL 339 (357)
T ss_dssp ---HHTTCCCTTCEEEEEC--------------CBTTTEEEEEEEEEC
T ss_pred ---HHcCCCCCCCEEEEEE--------------EchhhhheeeeEEec
Confidence 44443 2667887775 5666 467777654
|
| >2x3e_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; HED, transferase, acyltransferase, lipid synthesis, multifun enzyme; 1.81A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=83.63 E-value=2.2 Score=41.47 Aligned_cols=82 Identities=11% Similarity=0.089 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHcCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHhcccCCC-Cee-EE-eeCC-cChHHHHHHHHHHHH
Q 012253 59 SMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNT-DIE-GV-DSTN-ACYGGTAALFNCVNW 134 (467)
Q Consensus 59 ~ma~~Aa~~aL~~agi~~~~Id~Li~~Tes~~~~~ps~a~~v~~~Lgl~G~~-~~~-~~-di~~-aC~gg~~AL~~A~~~ 134 (467)
....++.+++|+++|++++|||.++.... ...+--.+.+.||+ +. ++. .+ .+.| .+++...+|.. .
T Consensus 224 ~~~~~~i~~aL~~agl~~~did~~~~H~~-----~~~~~d~~~~~lg~--~~~~~~~~~~~~Gnt~sAs~~~~L~~---~ 293 (331)
T 2x3e_A 224 TQMSDSVRRVLDRVGWQASDLHHLVPHQA-----NTRILAAVADQLDL--PVERVVSNIAEVGNTVAASIPLALAH---G 293 (331)
T ss_dssp HHHHHHHHHHHHHHTCCGGGCSEEEECCC-----CHHHHHHHHHHHTC--CGGGBCCCHHHHCBCGGGHHHHHHHH---H
T ss_pred HHHHHHHHHHHHHcCCCHHHCCEEEEcCC-----CHHHHHHHHHHcCC--CHHHHhhhHhhhCcHHHHHHHHHHHH---H
Confidence 45667899999999999999999887322 22233458889887 32 222 12 2233 44444444443 3
Q ss_pred HHhCC-CCCCEEEEEEe
Q 012253 135 VESAS-WDGRYGLVVCT 150 (467)
Q Consensus 135 l~a~~-~~~~~aLVV~s 150 (467)
++.+. .+|+++|+++.
T Consensus 294 ~~~~~~~~G~~vll~~~ 310 (331)
T 2x3e_A 294 LRQGILRDGGNMVLTGF 310 (331)
T ss_dssp HHTTCSCTTCEEEEEEE
T ss_pred HHhCCCCCCCEEEEEEE
Confidence 45552 26788888864
|
| >4ewp_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; transferase; 2.20A {Micrococcus luteus nctc 2665} | Back alignment and structure |
|---|
Probab=82.98 E-value=2 Score=42.13 Aligned_cols=81 Identities=12% Similarity=0.112 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHcCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHhcccCCCCeeEE-ee---CC-cChHHHHHHHHHHH
Q 012253 59 SMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGV-DS---TN-ACYGGTAALFNCVN 133 (467)
Q Consensus 59 ~ma~~Aa~~aL~~agi~~~~Id~Li~~Tes~~~~~ps~a~~v~~~Lgl~G~~~~~~~-di---~~-aC~gg~~AL~~A~~ 133 (467)
....++++++|+++|++++|||.+++.. ..+.+-..+++.||+ +++-... .+ +| ++++-..+|..+
T Consensus 249 ~~~~~~i~~~L~~~gl~~~did~~v~Hq-----~~~~i~~~~~~~Lgl--~~~~~~~~~l~~~GNtssasi~~~L~~~-- 319 (350)
T 4ewp_A 249 WSMAKVAREALDAAGVEPEDLAAFIPHQ-----ANMRIIDEFAKQLKL--PESVVVARDIADAGNTSAASIPLAMHRL-- 319 (350)
T ss_dssp HTHHHHHHHHHHHHTCCGGGEEEEEECC-----SCHHHHHHHHHHTTC--CTTSEECCTHHHHCBCGGGHHHHHHHHH--
T ss_pred HhhhHHHHHHHHhhcCChhHhceEEecC-----CCHHHHHHHHHHcCc--ChHhEEecccccccchHHHHHHHHHHHH--
Confidence 4455788999999999999999998642 345566678999998 4332211 22 33 445555555444
Q ss_pred HHHhCC-CCCCEEEEEE
Q 012253 134 WVESAS-WDGRYGLVVC 149 (467)
Q Consensus 134 ~l~a~~-~~~~~aLVV~ 149 (467)
++.+. .+|.++|+++
T Consensus 320 -~~~g~~~~Gd~vll~~ 335 (350)
T 4ewp_A 320 -LEENPELSGGLALQIG 335 (350)
T ss_dssp -HHHCGGGTTSEEEEEE
T ss_pred -HHhCCCCCcCEEEEEE
Confidence 33432 2678888876
|
| >1mzj_A Beta-ketoacylsynthase III; beta-ketosynthase, aromatic polyketide, biosynthetic engineering, catalytic triad, transferase; HET: COA; 2.10A {Streptomyces SP} SCOP: c.95.1.2 c.95.1.2 | Back alignment and structure |
|---|
Probab=82.53 E-value=3.4 Score=40.20 Aligned_cols=82 Identities=15% Similarity=0.086 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHcCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHhcccCCCC--ee-EE-eeCC-cChHHHHHHHHHHH
Q 012253 59 SMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTD--IE-GV-DSTN-ACYGGTAALFNCVN 133 (467)
Q Consensus 59 ~ma~~Aa~~aL~~agi~~~~Id~Li~~Tes~~~~~ps~a~~v~~~Lgl~G~~~--~~-~~-di~~-aC~gg~~AL~~A~~ 133 (467)
....++.+++|+++|++++|||.++.... ...+--.+.+.||+ +.+ +. .+ +++| .+++...+|..
T Consensus 231 ~~~~~~i~~aL~~agl~~~did~v~~H~~-----~~~~~d~i~~~lg~--~~~~~~~~~~~~~Gn~~sAs~~~~L~~--- 300 (339)
T 1mzj_A 231 ADVVPAAREALEVAGLTVGDLVAFVPHQA-----NLRIIDVLVDRLGV--PEHVVVSRDAEDTGNTSSASVALALDR--- 300 (339)
T ss_dssp HHHHHHHHHHHHTTTCCGGGCSEEEECCS-----CHHHHHHHHHHHTC--CTTSEECCTHHHHCBCTTHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHcCCCHHHCCEEEECCC-----CHHHHHHHHHHhCC--CccceeeehhhhcCchHHHHHHHHHHH---
Confidence 45667889999999999999999986421 12223358889987 333 21 11 2233 44444444443
Q ss_pred HHHhCC-CCCCEEEEEEe
Q 012253 134 WVESAS-WDGRYGLVVCT 150 (467)
Q Consensus 134 ~l~a~~-~~~~~aLVV~s 150 (467)
.++.+. .+|+++|+++.
T Consensus 301 ~~~~g~~~~G~~vll~~~ 318 (339)
T 1mzj_A 301 LVRSGAVPGGGPALMIGF 318 (339)
T ss_dssp HHHHTSSCTTCEEEEEEE
T ss_pred HHHcCCCCCCCEEEEEEE
Confidence 345542 26788888764
|
| >2iik_A 3-ketoacyl-COA thiolase, peroxisomal; fatty acid metabolism, structural genomics, structural genom consortium, SGC, transferase; 2.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=82.09 E-value=4.2 Score=41.05 Aligned_cols=75 Identities=7% Similarity=-0.047 Sum_probs=42.9
Q ss_pred eehhHHhhhhCCCcCeeEEeccceEeeccCCCCCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEeccCCCCCCcHHHHHHH
Q 012253 23 VLQEALEVHDGVSKGKYTVGLGQDCMAFCSEVEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQ 102 (467)
Q Consensus 23 v~~~el~~~~g~~~~k~~~Gig~r~~av~~~~Ed~~~ma~~Aa~~aL~~agi~~~~Id~Li~~Tes~~~~~ps~a~~v~~ 102 (467)
|..++.++.+|..+--...|.+... . .++.. ..-...|++++|+++|++|+|||.+.+... .+.......+
T Consensus 281 L~s~~~A~~~g~~~~a~i~g~~~~~--~-~p~~~-~~~~~~a~~~al~~Agl~~~dId~vE~h~a-----f~~~~~~~~~ 351 (418)
T 2iik_A 281 LARRSKAEELGLPILGVLRSYAVVG--V-PPDIM-GIGPAYAIPVALQKAGLTVSDVDIFEINEA-----FASQAAYCVE 351 (418)
T ss_dssp EEEHHHHHHHTCCCCEEEEEEEEEE--C-CGGGG-GGHHHHHHHHHHHHHTCCGGGEEEEEECCS-----BHHHHHHHHH
T ss_pred EecHHHHHhcCCCceEEEEEEEecc--C-Cchhc-chhHHHHHHHHHHHcCCCHHHCCeeeeecc-----chHHHHHHHH
Confidence 4445555556665422223443322 1 11111 122356999999999999999999987532 2233445566
Q ss_pred Hhcc
Q 012253 103 IFEK 106 (467)
Q Consensus 103 ~Lgl 106 (467)
.||+
T Consensus 352 ~lg~ 355 (418)
T 2iik_A 352 KLRL 355 (418)
T ss_dssp HHTC
T ss_pred HcCC
Confidence 7776
|
| >3gwa_A 3-oxoacyl-(acyl-carrier-protein) synthase III; structural genomics, synthetase; 1.60A {Burkholderia pseudomallei} PDB: 3gwe_A | Back alignment and structure |
|---|
Probab=81.54 E-value=3.6 Score=40.75 Aligned_cols=83 Identities=10% Similarity=-0.072 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHHcCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHhcccCCCCeeEEeeC--CcC--hHHHHHHHHHHH
Q 012253 58 ISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDST--NAC--YGGTAALFNCVN 133 (467)
Q Consensus 58 ~~ma~~Aa~~aL~~agi~~~~Id~Li~~Tes~~~~~ps~a~~v~~~Lgl~G~~~~~~~di~--~aC--~gg~~AL~~A~~ 133 (467)
.....++++++|+++|++++|||.+++.. ..+.+-..+++.||+ +++-....+. ..| ++-..+|. .
T Consensus 265 ~~~~~~~i~~~L~~~gl~~~did~~v~Hq-----~n~~i~~~~~~~Lgl--~~ek~~~~l~~~GNtssAsipl~L~---~ 334 (365)
T 3gwa_A 265 LAEVPRAADRLLALAGEPRENIDCFVLHQ-----ANRFMLDALRKKMKI--PEHKFPVLMEHCGNTVSSTLPLALE---T 334 (365)
T ss_dssp HHHHHHHHHHHHHHHTCCGGGCSEEEECC-----CCHHHHHHHHHHHTC--CGGGSCCCCTTTCBCGGGHHHHHHH---H
T ss_pred HHHHHHHHHHHHHHcCCCHHHCCEEEEcC-----CCHHHHHHHHHHhCC--CHHHHHHHHhcccchHHHHHHHHHH---H
Confidence 34455778899999999999999998642 344556788999998 3322112222 233 33333333 3
Q ss_pred HHHhCC-CCCCEEEEEEe
Q 012253 134 WVESAS-WDGRYGLVVCT 150 (467)
Q Consensus 134 ~l~a~~-~~~~~aLVV~s 150 (467)
.++.+. .+|.++|+++.
T Consensus 335 ~~~~g~~~~Gd~vll~~f 352 (365)
T 3gwa_A 335 MRANGTLARGMRLMLLGF 352 (365)
T ss_dssp HHHTTCCCTTCEEEEEEE
T ss_pred HHHcCCCCCCCEEEEEEE
Confidence 345553 26778888763
|
| >3il3_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, fatty acid biosynthesis, antibiotic, acyltransferase, cytoplasm, lipid synthesis; 2.70A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=81.30 E-value=3.9 Score=39.75 Aligned_cols=83 Identities=17% Similarity=0.081 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHHcCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHhcccCCCCeeEEee---CC-cChHHHHHHHHHHH
Q 012253 58 ISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDS---TN-ACYGGTAALFNCVN 133 (467)
Q Consensus 58 ~~ma~~Aa~~aL~~agi~~~~Id~Li~~Tes~~~~~ps~a~~v~~~Lgl~G~~~~~~~di---~~-aC~gg~~AL~~A~~ 133 (467)
+....++++++|+++|++++|||.+++.. ..+.+-..+++.||+ +++-....+ +| ++++-..+|..+
T Consensus 223 ~~~~~~~i~~~l~~~gl~~~did~~v~Hq-----~~~~i~~~~~~~lgl--~~ek~~~~l~~~GNt~sasi~~~L~~~-- 293 (323)
T 3il3_A 223 VRELSNVVEETLLANNLDKKDLDWLVPHQ-----ANLRIITATAKKLEM--DMSQVVVTLDKYANNSAATVPVALDEA-- 293 (323)
T ss_dssp HHHHHHHHHHHHHTTTCCTTTCCEEEECC-----SCHHHHHHHHHHTTC--CGGGBCCCHHHHCBCGGGHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHcCCCHHHCCEEEEcC-----CCHHHHHHHHHHcCc--CHHHhhccHhhcCchHHHHHHHHHHHH--
Confidence 34445778899999999999999998743 234556688899998 332211222 22 444444444433
Q ss_pred HHHhCC-CCCCEEEEEEe
Q 012253 134 WVESAS-WDGRYGLVVCT 150 (467)
Q Consensus 134 ~l~a~~-~~~~~aLVV~s 150 (467)
++.+. .+|.++|+++.
T Consensus 294 -~~~g~~~~Gd~vll~~~ 310 (323)
T 3il3_A 294 -IRDGRIQRGQLLLLEAF 310 (323)
T ss_dssp -HHTTSSCTTCEEEEEEE
T ss_pred -HHcCCCCCCCEEEEEEE
Confidence 44543 26788888763
|
| >3s21_A 3-oxoacyl-[ACP] synthase III; non-decarboxylative claisen condensation reaction, transfera; HET: CER; 1.70A {Xanthomonas campestris PV} PDB: 3s23_A* 3row_A 3s1z_A 3s20_A* 3fk5_A | Back alignment and structure |
|---|
Probab=81.01 E-value=3.8 Score=40.10 Aligned_cols=82 Identities=7% Similarity=0.007 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHcCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHhcccCCCC-ee-EEe-eCC-cChHHHHHHHHHHHH
Q 012253 59 SMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTD-IE-GVD-STN-ACYGGTAALFNCVNW 134 (467)
Q Consensus 59 ~ma~~Aa~~aL~~agi~~~~Id~Li~~Tes~~~~~ps~a~~v~~~Lgl~G~~~-~~-~~d-i~~-aC~gg~~AL~~A~~~ 134 (467)
....++++++|+++|++++|||.+++.. ..+.+-..+.+.||+ +++ +. .++ .+| ++++...+|..+
T Consensus 246 ~~~~~~i~~~l~~~gl~~~did~~v~Hq-----~~~~i~~~~~~~lgl--~~ek~~~~l~~~GNt~sasi~~~L~~~--- 315 (345)
T 3s21_A 246 KLAQKTFVAAKQVLGWAVEELDQFVIHQ-----VSRPHTAAFVKSFGI--DPAKVMTIFGEHGNIGPASVPIVLSKL--- 315 (345)
T ss_dssp HHHHHHHHHHHHHHCCCGGGCSEEEECC-----SCHHHHHHHHHHHTC--CGGGBCCCHHHHCBCGGGHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHcCCCHHHCCEEEeCC-----CCHHHHHHHHHHcCc--CHHHceeeHhhcCchHHHHHHHHHHHH---
Confidence 4455677899999999999999999742 234456688899998 332 21 111 223 444444555443
Q ss_pred HHhCC-CCCCEEEEEEe
Q 012253 135 VESAS-WDGRYGLVVCT 150 (467)
Q Consensus 135 l~a~~-~~~~~aLVV~s 150 (467)
++.|. .+|+++|+++.
T Consensus 316 ~~~g~~~~Gd~vll~~~ 332 (345)
T 3s21_A 316 KELGRLKKGDRIALLGI 332 (345)
T ss_dssp HHHTCCCTTCEEEEEEE
T ss_pred HHcCCCCCCCEEEEEEE
Confidence 34442 26788888763
|
| >2wu9_A 3-ketoacyl-COA thiolase 2, peroxisomal; cysteine oxidation, fatty acid metabolism, oxylipin biosynthesis, plant lipid metabolism; 1.50A {Arabidopsis thaliana} PDB: 2c7y_A 2c7z_A 2wua_A | Back alignment and structure |
|---|
Probab=80.84 E-value=6.3 Score=40.17 Aligned_cols=131 Identities=9% Similarity=0.087 Sum_probs=67.0
Q ss_pred eehhHHhhhhCCCcCeeEEeccceEeeccCCCCCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEeccCCCCCCcHHHHHHH
Q 012253 23 VLQEALEVHDGVSKGKYTVGLGQDCMAFCSEVEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQ 102 (467)
Q Consensus 23 v~~~el~~~~g~~~~k~~~Gig~r~~av~~~~Ed~~~ma~~Aa~~aL~~agi~~~~Id~Li~~Tes~~~~~ps~a~~v~~ 102 (467)
|..++.++.+|..+--+..|.+...- .+... ..-...|++++|+++|++|+|||.+..--... .......+
T Consensus 283 L~s~e~A~~~g~~~~a~I~g~~~~~~---~p~~~-~~~~~~A~~~Al~~AGl~~~DId~iE~h~aft-----~~~l~~~~ 353 (442)
T 2wu9_A 283 LMKRSVAMQKGLPVLGVFRTFAAVGV---DPAIM-GIGPAVAIPAAVKAAGLELDDIDLFEINEAFA-----SQFVYCRN 353 (442)
T ss_dssp EEEHHHHHHHTCCCCEEEEEEEEEEC---CGGGG-GGHHHHHHHHHHHHTTCCGGGCCEEEECCSBH-----HHHHHHHH
T ss_pred EeeHHHHHHcCCCceEEEEEEEEecC---Cchhc-chHHHHHHHHHHHHcCCCHHHCCEEEEeCCCh-----HHHHHHHH
Confidence 44556666677666322245554431 11111 12345899999999999999999998632111 12333346
Q ss_pred HhcccCCCCe--e--EEeeCC--cChHHHHHHHHHHHHHHhCCCCCCEEEEEEeecccccCCCCCCccccceeEEEecCC
Q 012253 103 IFEKYGNTDI--E--GVDSTN--ACYGGTAALFNCVNWVESASWDGRYGLVVCTDSAVYAEGPARPTGGAAAVAMLIGPD 176 (467)
Q Consensus 103 ~Lgl~G~~~~--~--~~di~~--aC~gg~~AL~~A~~~l~a~~~~~~~aLVV~sD~~~y~~~~~~~t~GdGAvA~Ll~~~ 176 (467)
.||+.. +.+ . ..-+.+ +|+| +..+..+...|+.+.-+.+++|+-.+= +|...+|+||++-
T Consensus 354 ~lG~~~-~~vN~~GG~~a~GHp~GAsG-~~~~~~~v~~Lr~~~~~~~~glas~~~------------GGG~~~a~v~~~~ 419 (442)
T 2wu9_A 354 KLGLDP-EKINVNGGAMAIGHPLGATG-ARCVATLLHEMKRRGKDCRFGVVSMCI------------GTGMGAAAVFERG 419 (442)
T ss_dssp HHTCCG-GGBSTTCCHHHHCCCHHHHH-HHHHHHHHHHHHHHCTTCCEEEEEEEE------------TTTEEEEEEEEEC
T ss_pred HhCCCC-CCcCCCccHhhcCCchhHHH-HHHHHHHHHHHhccCCCCCEEEEEeec------------ccchheEEEEEec
Confidence 677621 111 0 001222 3333 333444444455442013677753321 3456678888764
|
| >2ebd_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, aquifex VF5, lipid metabolism, structural genomics; 2.10A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=80.72 E-value=2.3 Score=40.60 Aligned_cols=82 Identities=15% Similarity=0.121 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHcCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHhcccCCCCeeE-E-eeCC-cChHHHHHHHHHHHHHH
Q 012253 60 MSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEG-V-DSTN-ACYGGTAALFNCVNWVE 136 (467)
Q Consensus 60 ma~~Aa~~aL~~agi~~~~Id~Li~~Tes~~~~~ps~a~~v~~~Lgl~G~~~~~~-~-di~~-aC~gg~~AL~~A~~~l~ 136 (467)
...++++++|+++|++|+|||.++.... ...+-..+.+.||+. ..++.. + .++| .++++..+|..+ ++
T Consensus 211 ~~~~~i~~al~~agl~~~did~~~~H~~-----~~~~~~~~~~~lg~~-~~~~~~~~~~~Gh~~~As~~~~L~~~---~~ 281 (309)
T 2ebd_A 211 SMEEVCREVLEKAGVKPEEVSLVIPHQA-----NVRIINALAEKLNIP-KEKVFVNIQKYGNTSAASIPIALHEA---IK 281 (309)
T ss_dssp HHHHHHHHHHHHHTCCGGGCSEEEECCS-----CHHHHHHHHHHTTCC-GGGBCCCHHHHCBCGGGHHHHHHHHH---HH
T ss_pred HHHHHHHHHHHHcCCCHHHCCEEEEcCC-----CHHHHHHHHHHhCCC-HHHhhhhHhhhcchHHHHHHHHHHHH---HH
Confidence 4567899999999999999999986332 112233578888872 122221 1 1222 444444444433 44
Q ss_pred hCC-CCCCEEEEEEe
Q 012253 137 SAS-WDGRYGLVVCT 150 (467)
Q Consensus 137 a~~-~~~~~aLVV~s 150 (467)
.+. .+|+++|+++.
T Consensus 282 ~g~~~~G~~~l~~~~ 296 (309)
T 2ebd_A 282 EGKVKRGDLILMTAM 296 (309)
T ss_dssp TTCCCTTCEEEEEEE
T ss_pred cCCCCCCCEEEEEEE
Confidence 443 26788888764
|
| >4dfe_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; ssgcid, seattle structural genomics center for infectious DI transferase; 2.35A {Burkholderia xenovorans} | Back alignment and structure |
|---|
Probab=80.24 E-value=3.3 Score=40.31 Aligned_cols=82 Identities=18% Similarity=0.042 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHHcCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHhcccCCCCeeEEee---CC-cChHHHHHHHHHHH
Q 012253 58 ISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDS---TN-ACYGGTAALFNCVN 133 (467)
Q Consensus 58 ~~ma~~Aa~~aL~~agi~~~~Id~Li~~Tes~~~~~ps~a~~v~~~Lgl~G~~~~~~~di---~~-aC~gg~~AL~~A~~ 133 (467)
.....++++++|+++|++++|||.++... ..+.+-..+++.||+ +++-....+ .| ++++-..+|..
T Consensus 233 ~~~~~~~i~~~l~~~gl~~~did~~~~Hq-----~~~~i~~~~~~~lgl--~~~~~~~~l~~~GNt~sasi~~~L~~--- 302 (333)
T 4dfe_A 233 VNVLEKVAVEALEKANLSAEQIDWLIPHQ-----ANIRIMQSTCRKLGL--PQERMIVTVGEHGNTSAASIPLALDV--- 302 (333)
T ss_dssp HHHHHHHHHHHHHHTTCCGGGCSEEEECC-----SCHHHHHHHHHHTTC--CGGGBCCCHHHHCBCGGGHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHcCCCHHHCCEEEEcC-----CCHHHHHHHHHHhCC--CHHHhhhhHHhcCchHHHHHHHHHHH---
Confidence 35556778899999999999999998742 234456788889997 332111122 22 34444444433
Q ss_pred HHHhCC-CCCCEEEEEE
Q 012253 134 WVESAS-WDGRYGLVVC 149 (467)
Q Consensus 134 ~l~a~~-~~~~~aLVV~ 149 (467)
+++.+. .+|.++|+++
T Consensus 303 ~~~~g~~~~Gd~vll~~ 319 (333)
T 4dfe_A 303 AVRDGRIKRGQNVLIEG 319 (333)
T ss_dssp HHHTTCSCTTCEEEEEE
T ss_pred HHHcCCCCCCCEEEEEE
Confidence 345553 2677888876
|
| >1zow_A 3-oxoacyl-[acyl-carrier-protein] synthase III; FABH, fatty acid biosynthesis, transferase; 2.00A {Staphylococcus aureus subsp} PDB: 3il7_A | Back alignment and structure |
|---|
Probab=80.23 E-value=2.9 Score=40.08 Aligned_cols=83 Identities=11% Similarity=0.018 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHcCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHhcccCCCCee-EEe-eCC-cChHHHHHHHHHHHHH
Q 012253 59 SMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIE-GVD-STN-ACYGGTAALFNCVNWV 135 (467)
Q Consensus 59 ~ma~~Aa~~aL~~agi~~~~Id~Li~~Tes~~~~~ps~a~~v~~~Lgl~G~~~~~-~~d-i~~-aC~gg~~AL~~A~~~l 135 (467)
.-..++.+++|+++|++++|||.++.... .+.+--.+.+.||+. ..++. .+. +.| .++++..+|.. .+
T Consensus 212 ~~~~~~i~~al~~agl~~~did~~~~H~~-----~~~~~d~~~~~lg~~-~~~~~~~~~~~Gh~~~as~~~~L~~---~~ 282 (313)
T 1zow_A 212 RIMGDASTRVVEKANLTSDDIDLFIPHQA-----NIRIMESARERLGIS-KDKMSVSVNKYGNTSAASIPLSIDQ---EL 282 (313)
T ss_dssp HHHHHHHHHHHHHTTCCGGGCSEEEECCS-----CHHHHHHHHHHHTCC-GGGBCCCHHHHCBCGGGHHHHHHHH---HH
T ss_pred HHHHHHHHHHHHHcCCCHHHCCEEEEcCC-----CHHHHHHHHHHhCCC-HHHHHHhHhhhCchHHHHHHHHHHH---HH
Confidence 35567889999999999999999986422 222333577888872 11222 111 222 44444444443 34
Q ss_pred HhCC-CCCCEEEEEEe
Q 012253 136 ESAS-WDGRYGLVVCT 150 (467)
Q Consensus 136 ~a~~-~~~~~aLVV~s 150 (467)
+.+. .+|+++|+++.
T Consensus 283 ~~~~~~~g~~vl~~~~ 298 (313)
T 1zow_A 283 KNGKLKDDDTIVLVGF 298 (313)
T ss_dssp HTTCCCTTCEEEEEEE
T ss_pred HcCCCCCCCEEEEEEE
Confidence 4443 26788888764
|
| >4efi_A 3-oxoacyl-(acyl-carrier protein) synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.35A {Burkholderia xenovorans} | Back alignment and structure |
|---|
Probab=80.03 E-value=2.4 Score=41.81 Aligned_cols=97 Identities=9% Similarity=-0.017 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHHHcCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHhcccCCCCeeEE---eeCC-cChHHHHHHHHHHH
Q 012253 58 ISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGV---DSTN-ACYGGTAALFNCVN 133 (467)
Q Consensus 58 ~~ma~~Aa~~aL~~agi~~~~Id~Li~~Tes~~~~~ps~a~~v~~~Lgl~G~~~~~~~---di~~-aC~gg~~AL~~A~~ 133 (467)
.....++++++|+++|++++|||.+++.. ..+.+-..+++.||+ +++-... +.+| ++++-..+|..+..
T Consensus 243 ~~~~~~~i~~~l~~~gl~~~did~~v~Hq-----~~~~i~~~~~~~Lgl--~~ek~~~~l~~~GNt~sasi~~~L~~~~~ 315 (354)
T 4efi_A 243 LNAVPKLVSRTLDIAGRDKDSYDAFLFHQ-----ANLFMLKHLAKKAGL--PAERVPVNIGEYGNTSCASIPLLITTELK 315 (354)
T ss_dssp HHHHHHHHHHHHHHHTCCGGGCSEEEECC-----CCHHHHHHHHHHTTC--CGGGSCCCHHHHCBCGGGHHHHHHHHHSH
T ss_pred HHHHHHHHHHHHHHcCCCHHHCCEEEeCC-----CCHHHHHHHHHHhCc--CHHHHHHHHhhhCcHHHHHHHHHHHHHHH
Confidence 45566778999999999999999998743 234556678999998 3321111 2233 56666666665543
Q ss_pred --HHHhCCCCCCEEEEEEeecccccCCCCCCccccceeEEEecCCC
Q 012253 134 --WVESASWDGRYGLVVCTDSAVYAEGPARPTGGAAAVAMLIGPDA 177 (467)
Q Consensus 134 --~l~a~~~~~~~aLVV~sD~~~y~~~~~~~t~GdGAvA~Ll~~~~ 177 (467)
.++ +|.++|+++.- .|--..++||.-.+
T Consensus 316 ~g~~~----~Gd~vll~~fG------------~G~t~~~~ll~~~~ 345 (354)
T 4efi_A 316 DRLKE----ETLQLGMFGFG------------VGYSWASAALAVGP 345 (354)
T ss_dssp HHHHH----SCEEEEEEEEE------------TTTEEEEEEEEECC
T ss_pred hCCCC----CCCEEEEEEEc------------hhhhheeeEEEECC
Confidence 333 55788877632 13444566666544
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 467 | ||||
| d1xpma2 | 221 | c.95.1.2 (A:168-388) 3-hydroxy-3-methylglutaryl Co | 1e-65 | |
| d1xpma1 | 166 | c.95.1.2 (A:2-167) 3-hydroxy-3-methylglutaryl CoA | 7e-30 | |
| d1u6ea1 | 184 | c.95.1.2 (A:-10-174) Ketoacyl-ACP synthase III (Fa | 3e-09 | |
| d1teda_ | 372 | c.95.1.2 (A:) Polyketide synthase PKS18 {Mycobacte | 7e-08 |
| >d1xpma2 c.95.1.2 (A:168-388) 3-hydroxy-3-methylglutaryl CoA synthase MvaS {Staphylococcus aureus [TaxId: 1280]} Length = 221 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Chalcone synthase-like domain: 3-hydroxy-3-methylglutaryl CoA synthase MvaS species: Staphylococcus aureus [TaxId: 1280]
Score = 208 bits (531), Expect = 1e-65
Identities = 58/275 (21%), Positives = 106/275 (38%), Gaps = 55/275 (20%)
Query: 179 IAFESKLRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKYFCQKFEKLEGR 238
+A ++ YDF++P +YP+VDG LS+ Y+ + + + ++ K
Sbjct: 2 LALNED-AVAYTEDVYDFWRPT-GHKYPLVDGALSKDAYIRSFQQSWNEYAKRQGK---- 55
Query: 239 QFSMLDVDYFVFHSPYNKLVQKSFARLFFNDFLRNASSVDEIAKEKLAPYSTLSDVESYQ 298
S+ D FH P+ K+ +K+ + N DE +E+L
Sbjct: 56 --SLADFASLCFHVPFTKMGKKALESIIDNA--------DETTQERLRS----------- 94
Query: 299 SRDLEKASQQVAKQLYDLKVQPSTLIPKQVGNMYTASLYAAFASLLHEKHSSLEGKRVIM 358
+ + + VGN+YT SLY + SLL G+ + +
Sbjct: 95 ------------------GYEDAVDYNRYVGNIYTGSLYLSLISLLE-NRDLQAGETIGL 135
Query: 359 FSYGSGLTATMFSLQLQEGHRPFSLSNIVKVMDVPGKLKLRHEFPPEKFVDIMKLMEHRY 418
FSYGSG +S L EG++ + + L R E + + K R+
Sbjct: 136 FSYGSGSVGEFYSATLVEGYK-----DHLDQAAHKALLNNRTEVSVDAYETFFK----RF 186
Query: 419 GAKDFVTSKDSSLLSPGTCYLTEVDSMFRRFYAKK 453
+F +D+ YL+ +++ R ++ +
Sbjct: 187 DDVEFDEEQDAVHEDRHIFYLSNIENNVREYHRPE 221
|
| >d1xpma1 c.95.1.2 (A:2-167) 3-hydroxy-3-methylglutaryl CoA synthase MvaS {Staphylococcus aureus [TaxId: 1280]} Length = 166 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Chalcone synthase-like domain: 3-hydroxy-3-methylglutaryl CoA synthase MvaS species: Staphylococcus aureus [TaxId: 1280]
Score = 112 bits (280), Expect = 7e-30
Identities = 42/169 (24%), Positives = 71/169 (42%), Gaps = 7/169 (4%)
Query: 9 VGILALDIYFPPTCVLQEALEVHDGVSKGKYTVGLGQDCMAFCSEVEDVISMSLTVVTSL 68
+GI ++ Y P V L V K+ +G+GQ MA +D++SM +
Sbjct: 2 IGIDKINFYVPKYYVDMAKLAEARQVDPNKFLIGIGQTEMAVSPVNQDIVSMGANAAKDI 61
Query: 69 LEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAAL 128
+ IG + V +E+ +D +K+ + + + ACY T A+
Sbjct: 62 ITDEDKKK--IGMVIVATESAVDAAKAAAVQIHNLLGIQPF--ARCFEMKEACYAATPAI 117
Query: 129 FNCVNWVESASWDGRYGLVVCTDSAVYA-EGPARPTGGAAAVAMLIGPD 176
+++ + LV+ TD+A Y PT GA AVAM+I +
Sbjct: 118 QLAKDYLA--TRPNEKVLVIATDTARYGLNSGGEPTQGAGAVAMVIAHN 164
|
| >d1u6ea1 c.95.1.2 (A:-10-174) Ketoacyl-ACP synthase III (FabH) {Mycobacterium tuberculosis [TaxId: 1773]} Length = 184 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Chalcone synthase-like domain: Ketoacyl-ACP synthase III (FabH) species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 54.1 bits (129), Expect = 3e-09
Identities = 31/175 (17%), Positives = 55/175 (31%), Gaps = 9/175 (5%)
Query: 6 PKNVGILALDIYFPPTCVLQEALEVHDGVSKGKYTVGLGQDCMAFCSEVEDVISMSLTVV 65
++VG+L++ Y P V + + H S G F ++ E SM+
Sbjct: 10 ARSVGLLSVGAYRPERVVTNDEICQHIDSSDEWIYTRTGIKTRRFAADDESAASMATEAC 69
Query: 66 TSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGT 125
L + I + V + T ++ + G I G D + G
Sbjct: 70 RRALSNAGLSAADIDGVIVTTNTHFLQTPPAAPMVA---ASLGAKGILGFDLSAGAAGFG 126
Query: 126 AALFNCVNWVESASWDGRYGLVVCTDSAV----YAEGPARPTGGAAAVAMLIGPD 176
AL + + LVV T+ + A A+++G
Sbjct: 127 YALGAAADMIRGGGA--ATMLVVGTEKLSPTIDMYDRGNCFIFADGAAAVVVGET 179
|
| >d1teda_ c.95.1.2 (A:) Polyketide synthase PKS18 {Mycobacterium tuberculosis [TaxId: 1773]} Length = 372 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Chalcone synthase-like domain: Polyketide synthase PKS18 species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 52.1 bits (124), Expect = 7e-08
Identities = 45/324 (13%), Positives = 88/324 (27%), Gaps = 60/324 (18%)
Query: 54 VEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIE 113
E + +++ V L +IG L + + T + +
Sbjct: 89 YEHAVPLAVDVSKRALAGLPYRAAEIGLLVLATSTGFIAPGV--DVAIVKELGLSPSISR 146
Query: 114 GVDSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTD--------SAVYAEGPARPTGG 165
V + C AL N+V + LVVC + + + G
Sbjct: 147 VVVNFMGCAAAMNALGTATNYVRA--HPAMKALVVCIELCSVNAVFADDINDVVIHSLFG 204
Query: 166 AAAVAMLIGPD-APIAFESKLRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSC 224
A++IG E S + V ++
Sbjct: 205 DGCAALVIGASQVQEKLEPGKVVVRSSFSQLLDNTEDGIVLGVNHNGITCELSENLPGYI 264
Query: 225 YKYFCQKFEKLEGRQ-FSMLDVDYFVFHSPYNKLVQKSFARLFFNDFLRNASSVDEIAKE 283
+ ++ + D+D + H K++++S L I+ E
Sbjct: 265 FSGVAPVVTEMLWDNGLQISDIDLWAIHPGGPKIIEQSVRSL-------------GISAE 311
Query: 284 KLAPYSTLSDVESYQSRDLEKASQQVAKQLYDLKVQPSTLIPKQVGNMYTASLYAAFASL 343
A S D + + GNM + SL ++
Sbjct: 312 LAAQ-----------SWD----------------------VLARFGNMLSVSLIFVLETM 338
Query: 344 LHEKHSSLEGKRVIMFSYGSGLTA 367
+ + S+ + F++G G+T
Sbjct: 339 VQQAESAKAISTGVAFAFGPGVTV 362
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 467 | |||
| d1xpma2 | 221 | 3-hydroxy-3-methylglutaryl CoA synthase MvaS {Stap | 100.0 | |
| d1teda_ | 372 | Polyketide synthase PKS18 {Mycobacterium tuberculo | 100.0 | |
| d1xpma1 | 166 | 3-hydroxy-3-methylglutaryl CoA synthase MvaS {Stap | 100.0 | |
| d1u6ea1 | 184 | Ketoacyl-ACP synthase III (FabH) {Mycobacterium tu | 100.0 | |
| d1hnja1 | 174 | Ketoacyl-ACP synthase III (FabH) {Escherichia coli | 100.0 | |
| d1mzja1 | 181 | Priming beta-ketosynthase from the r1128 polyketid | 100.0 | |
| d1ub7a1 | 172 | Ketoacyl-ACP synthase III (FabH) {Thermus thermoph | 99.97 | |
| d1u0ma1 | 200 | Putative polyketide synthase SCO1206 {Streptomyces | 99.94 | |
| d1bi5a1 | 235 | Chalcone synthase {Alfalfa (Medicago sativa) [TaxI | 99.94 | |
| d1mzja2 | 153 | Priming beta-ketosynthase from the r1128 polyketid | 99.78 | |
| d1u6ea2 | 148 | Ketoacyl-ACP synthase III (FabH) {Mycobacterium tu | 99.77 | |
| d1hnja2 | 143 | Ketoacyl-ACP synthase III (FabH) {Escherichia coli | 99.77 | |
| d1ub7a2 | 149 | Ketoacyl-ACP synthase III (FabH) {Thermus thermoph | 99.74 | |
| d1u0ma2 | 148 | Putative polyketide synthase SCO1206 {Streptomyces | 99.68 | |
| d1ee0a2 | 160 | Pyrone synthase (PyS, chalcone synthase 2) {Gerber | 99.53 | |
| d1u0ua2 | 156 | Dihydropinosylvin synthase {Scots pine (Pinus sylv | 99.52 | |
| d1bi5a2 | 154 | Chalcone synthase {Alfalfa (Medicago sativa) [TaxI | 99.51 | |
| d1ulqa1 | 273 | Beta-ketoadipyl CoA thiolase {Thermus thermophilus | 98.76 | |
| d1m3ka1 | 268 | Biosynthetic thiolase {Zoogloea ramigera [TaxId: 3 | 98.75 | |
| d1j3na1 | 249 | Beta-ketoacyl-ACP synthase II {Thermus thermophilu | 98.69 | |
| d1ox0a1 | 256 | Beta-ketoacyl-ACP synthase II {Streptococcus pneum | 98.59 | |
| d1wdkc1 | 262 | Fatty oxidation complex beta subunit (3-ketoacyl-C | 98.53 | |
| d1afwa1 | 269 | Thiolase {Baker's yeast (Saccharomyces cerevisiae) | 98.4 | |
| d2gfva1 | 250 | Beta-ketoacyl-ACP synthase II {Escherichia coli [T | 98.38 | |
| d1e5ma1 | 250 | Beta-ketoacyl-ACP synthase II {Synechocystis sp. [ | 98.1 | |
| d1tqya1 | 216 | Actinorhodin polyketide putative beta-ketoacyl syn | 97.81 | |
| d1tqyb1 | 208 | Actinorhodin polyketide putative beta-ketoacyl syn | 97.58 | |
| d2ix4a1 | 270 | Beta-ketoacyl-ACP synthase II {Thale cress (Arabid | 97.55 | |
| d2vbaa1 | 253 | Beta-ketoacyl-ACP synthase I {Escherichia coli [Ta | 96.92 | |
| d1mzja2 | 153 | Priming beta-ketosynthase from the r1128 polyketid | 95.1 | |
| d1ub7a2 | 149 | Ketoacyl-ACP synthase III (FabH) {Thermus thermoph | 94.76 | |
| d1u6ea2 | 148 | Ketoacyl-ACP synthase III (FabH) {Mycobacterium tu | 94.67 | |
| d1m3ka2 | 124 | Biosynthetic thiolase {Zoogloea ramigera [TaxId: 3 | 92.49 | |
| d1hnja2 | 143 | Ketoacyl-ACP synthase III (FabH) {Escherichia coli | 92.11 | |
| d1wdkc2 | 128 | Fatty oxidation complex beta subunit (3-ketoacyl-C | 91.35 | |
| d1tqyb2 | 194 | Actinorhodin polyketide putative beta-ketoacyl syn | 90.21 | |
| d1ulqa2 | 125 | Beta-ketoadipyl CoA thiolase {Thermus thermophilus | 89.62 | |
| d1afwa2 | 124 | Thiolase {Baker's yeast (Saccharomyces cerevisiae) | 86.9 | |
| d1teda_ | 372 | Polyketide synthase PKS18 {Mycobacterium tuberculo | 83.64 | |
| d1tqya2 | 205 | Actinorhodin polyketide putative beta-ketoacyl syn | 80.43 |
| >d1xpma2 c.95.1.2 (A:168-388) 3-hydroxy-3-methylglutaryl CoA synthase MvaS {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Chalcone synthase-like domain: 3-hydroxy-3-methylglutaryl CoA synthase MvaS species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=4.7e-49 Score=368.50 Aligned_cols=219 Identities=24% Similarity=0.442 Sum_probs=194.8
Q ss_pred eeecccccccccCcccccccCCCCCCceecCcchHHHHHHHHHHHHHHHHHHHHhhhcCCCCccccceeccCCchHHHHH
Q 012253 180 AFESKLRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKYFCQKFEKLEGRQFSMLDVDYFVFHSPYNKLVQ 259 (467)
Q Consensus 180 ~~~~~~~~~~~~~~~df~~p~~~~~~~~vdG~~s~~~y~~a~~~~~~~~~~~~~~~~~~~~~~~d~d~~i~H~p~~k~~~ 259 (467)
++++ ..++|+.+++|||||. .+++|+|||++|+.||++++++|++.|+++. +..++|||++|||+||+||++
T Consensus 3 ~~~~-~~~~y~~~~~DF~rP~-~~~~pvvDG~~S~~~Yl~~l~~~~~~~~~~~------g~~~~dfd~~~fH~P~~km~~ 74 (221)
T d1xpma2 3 ALNE-DAVAYTEDVYDFWRPT-GHKYPLVDGALSKDAYIRSFQQSWNEYAKRQ------GKSLADFASLCFHVPFTKMGK 74 (221)
T ss_dssp EECS-CCEEEECCCCSEECBT-TCSSCEECHHHHHHHHHHHHHHHHHHHHHHH------TCCGGGCSEEEECCSSHHHHH
T ss_pred EEeC-CCEeeeccCccccCCC-CCCCCeECCcchHHHHHHHHHHHHHHHHHHc------CCChhhhheEEeecCchhhHH
Confidence 4554 4789999999999998 6789999999999999999999999999886 478899999999999999999
Q ss_pred HHHHhhhhhhhccccCchhhHHhhhcCCCCCCCcchhhhhhhHHHHHHHHHHHHhhhhcCCCcccccccCccccchHHHH
Q 012253 260 KSFARLFFNDFLRNASSVDEIAKEKLAPYSTLSDVESYQSRDLEKASQQVAKQLYDLKVQPSTLIPKQVGNMYTASLYAA 339 (467)
Q Consensus 260 k~~~~l~~~~~~~~~~~~~~~~~~~l~~~~g~~~e~~~~~~~~~k~~~~~~~~~~~~~~~~s~~~~~~~GN~~taS~~l~ 339 (467)
|++++|+.+. ....++.|+++++||+.+++++|||||||+|++
T Consensus 75 ka~~~l~~~~-------------------------------------~~~~~~~~~~~~~~s~~~~~~iGN~YTaSlyl~ 117 (221)
T d1xpma2 75 KALESIIDNA-------------------------------------DETTQERLRSGYEDAVDYNRYVGNIYTGSLYLS 117 (221)
T ss_dssp HHHHTTGGGS-------------------------------------CHHHHHHHHHHHHHHTTGGGGTCCCGGGHHHHH
T ss_pred HHHHHHHhcc-------------------------------------chhhHHHHHHhhhhHHHHHHhcCCcchHHHHHH
Confidence 9999985221 023467788999999999999999999999999
Q ss_pred HHHHHhhcCcCCCCCEEEEEEeccccceeeEEEEEecCCCCcchhhhhhcCChHHHhcccccCChHHHHHHHHHHHHhcC
Q 012253 340 FASLLHEKHSSLEGKRVIMFSYGSGLTATMFSLQLQEGHRPFSLSNIVKVMDVPGKLKLRHEFPPEKFVDIMKLMEHRYG 419 (467)
Q Consensus 340 L~~~l~~~~~~~~G~~ill~syGsG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~r~~~~~~~y~~~~~~~~~~~~ 419 (467)
|+++|++ +.+++|+||+|||||||+++++|+++|++ ++++++.+.++.++|++|+.++++||+++++.+.
T Consensus 118 L~Sll~~-~~~~~G~rIglfSYGSG~~ae~fs~~V~~-----~~~~~~~~~~l~~~L~~R~~l~~~~Ye~~~~~~~---- 187 (221)
T d1xpma2 118 LISLLEN-RDLQAGETIGLFSYGSGSVGEFYSATLVE-----GYKDHLDQAAHKALLNNRTEVSVDAYETFFKRFD---- 187 (221)
T ss_dssp HHHHHHH-SCCCTTCEEEEEEEETTTEEEEEEEEECT-----TGGGGCCHHHHHHHHHTCEECCHHHHHHHHHHHH----
T ss_pred HHhhhcc-ccCCCCCEEEEEEecCCcceeEEEEEEcc-----cHHHHHhhccHHHHHhCCccCCHHHHHHHHHhcc----
Confidence 9999998 67789999999999999999999999999 8999999999999999999999999999987543
Q ss_pred CCCCccCCCCCCcCCCcEEEEeeCCCCceEEeeec
Q 012253 420 AKDFVTSKDSSLLSPGTCYLTEVDSMFRRFYAKKE 454 (467)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~l~~i~~~~~R~Y~~~~ 454 (467)
..++.|..+.....+|+|||++|++ ++|+|+|++
T Consensus 188 ~~~~~~~~~~~~~~~g~~~L~~I~~-~~R~Y~r~e 221 (221)
T d1xpma2 188 DVEFDEEQDAVHEDRHIFYLSNIEN-NVREYHRPE 221 (221)
T ss_dssp TTCCCTTTTTGGGGTTSCEEEEEET-TEEEEECCT
T ss_pred CCCCCCccccccCCCccEEEEEEcC-CeEEEEecC
Confidence 4577787777778899999999999 677898863
|
| >d1teda_ c.95.1.2 (A:) Polyketide synthase PKS18 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Chalcone synthase-like domain: Polyketide synthase PKS18 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=100.00 E-value=5e-44 Score=363.19 Aligned_cols=312 Identities=17% Similarity=0.166 Sum_probs=231.5
Q ss_pred ceeEEeEEEEecCCceeehhHHhhhhCC---Cc---Cee-----EEeccceEeeccCC---------------------C
Q 012253 7 KNVGILALDIYFPPTCVLQEALEVHDGV---SK---GKY-----TVGLGQDCMAFCSE---------------------V 54 (467)
Q Consensus 7 ~~vgI~ai~~y~P~~~v~~~el~~~~g~---~~---~k~-----~~Gig~r~~av~~~---------------------~ 54 (467)
....|.++++|+|++.|+|+|+++..+. ++ +|+ .+||.+|+++..+. +
T Consensus 10 ~~a~I~g~g~~~P~~~v~n~e~~~~~~~~~~~~~~~~~~~ri~~~tGI~~R~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 89 (372)
T d1teda_ 10 TVAVIEGLATGTPRRVVNQSDAADRVAELFLDPGQRERIPRVYQKSRITTRRMAVDPLDAKFDVFRREPATIRDRMHLFY 89 (372)
T ss_dssp CEEEEEEEEEECCSCEEEHHHHHHHHHTC----CCTTHHHHHHHTSCCSEEECSSCTTSTTHHHHTTCSSCHHHHHHHHH
T ss_pred ceEEEEEEEEeCCCeEEcHHHHHHHHHhhcCChHHHHHHHHHHHccCCcccceeccccccchhhhhhcCCCHHHHHHHHH
Confidence 3467999999999999999999987531 22 222 26999999754321 2
Q ss_pred CCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHhcccCCCCeeEEeeC-CcChHHHHHHHHHHH
Q 012253 55 EDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDST-NACYGGTAALFNCVN 133 (467)
Q Consensus 55 Ed~~~ma~~Aa~~aL~~agi~~~~Id~Li~~Tes~~~~~ps~a~~v~~~Lgl~G~~~~~~~di~-~aC~gg~~AL~~A~~ 133 (467)
|++.+||++|+++||+++|++|+|||+||++|+|+ +..|+++++|+++||+ .+.+..+++. .||+|++.||++|.+
T Consensus 90 e~~~~la~~Aa~~aL~~ag~~~~dId~lI~~t~t~-~~~P~~a~~v~~~LGl--~~~~~~~~~~~~gC~g~~~aL~~A~~ 166 (372)
T d1teda_ 90 EHAVPLAVDVSKRALAGLPYRAAEIGLLVLATSTG-FIAPGVDVAIVKELGL--SPSISRVVVNFMGCAAAMNALGTATN 166 (372)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCGGGEEEEEEEESSC-CCSSCHHHHHHHHHTC--CTTCEEEEEESCGGGHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHcCCCHHHCCEEEEeccCC-CCCchHHHHHHhhhcc--CCceeEeeccccCccHHHHHHHHHHH
Confidence 56889999999999999999999999999999885 6799999999999998 6778888886 499999999999999
Q ss_pred HHHhCCCCCCEEEEEEeeccccc-CCCC-------CCccccceeEEEecCCCCc-eeecc---ccccccc---Ccccccc
Q 012253 134 WVESASWDGRYGLVVCTDSAVYA-EGPA-------RPTGGAAAVAMLIGPDAPI-AFESK---LRGSHMS---HAYDFYK 198 (467)
Q Consensus 134 ~l~a~~~~~~~aLVV~sD~~~y~-~~~~-------~~t~GdGAvA~Ll~~~~~~-~~~~~---~~~~~~~---~~~df~~ 198 (467)
+|+++ +.++||||++|++.+. ...+ ..+|||||+|+||++++.. .+... ..+.+.. +..+.+.
T Consensus 167 ~l~sg--~~~~~LVV~~E~~s~~~~~~d~~~~~~~~~lfGDGAaA~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (372)
T d1teda_ 167 YVRAH--PAMKALVVCIELCSVNAVFADDINDVVIHSLFGDGCAALVIGASQVQEKLEPGKVVVRSSFSQLLDNTEDGIV 244 (372)
T ss_dssp HHHHS--TTCEEEEEEEEECGGGCCCCSSHHHHHHHHHBCEEEEEEEEEEECTTSCCCTTCEEEEEEEEEECTTCTTSEE
T ss_pred HHhcC--CCccceeeeehhhcccccCCCcchhhhhhhhhcccceeEEeccCCcccccCCceeEEecccccccCCCccccc
Confidence 99999 4599999999987322 1111 2468999999999987641 11110 1111111 1111111
Q ss_pred cC-CCCCCceecCcchHHHHHHHHHHHHHHHHHHHHhhhcCCCCccccceeccCCchHHHHHHHHHhhhhhhhccccCch
Q 012253 199 PN-LASEYPVVDGKLSQTCYLMALDSCYKYFCQKFEKLEGRQFSMLDVDYFVFHSPYNKLVQKSFARLFFNDFLRNASSV 277 (467)
Q Consensus 199 p~-~~~~~~~vdG~~s~~~y~~a~~~~~~~~~~~~~~~~~~~~~~~d~d~~i~H~p~~k~~~k~~~~l~~~~~~~~~~~~ 277 (467)
.. ....+..++++.......+.+..+++.++ ++++++++|||+|++||++.+|++.+.++|
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L------~~~gl~~~did~~i~Hq~~~~i~~~i~~~L------------ 306 (372)
T d1teda_ 245 LGVNHNGITCELSENLPGYIFSGVAPVVTEML------WDNGLQISDIDLWAIHPGGPKIIEQSVRSL------------ 306 (372)
T ss_dssp EEEETTEEEEEECTTHHHHHHHHHHHHHHHHH------HHTTCCGGGCSCEEECCSCHHHHHHHHHHH------------
T ss_pred cCCCCCcceeechHHHHHHHHHHHHHHHHHHH------HhcCCCHHHhhhhhccCccHHHHHHHHHHc------------
Confidence 00 01123455666654433344444444443 455799999999999999999999999988
Q ss_pred hhHHhhhcCCCCCCCcchhhhhhhHHHHHHHHHHHHhhhhcCCCcccccccCccccchHHHHHHHHHhhcCcCCC-CCEE
Q 012253 278 DEIAKEKLAPYSTLSDVESYQSRDLEKASQQVAKQLYDLKVQPSTLIPKQVGNMYTASLYAAFASLLHEKHSSLE-GKRV 356 (467)
Q Consensus 278 ~~~~~~~l~~~~g~~~e~~~~~~~~~k~~~~~~~~~~~~~~~~s~~~~~~~GN~~taS~~l~L~~~l~~~~~~~~-G~~i 356 (467)
|++.++... +..+.+++|||+|||+|++|.+++++ ++..+ |++|
T Consensus 307 ------------gl~~ek~~~----------------------s~~~l~~~GN~~sasip~~L~~~l~~-g~~~~g~d~v 351 (372)
T d1teda_ 307 ------------GISAELAAQ----------------------SWDVLARFGNMLSVSLIFVLETMVQQ-AESAKAISTG 351 (372)
T ss_dssp ------------TCCGGGGHH----------------------HHHHHHHHCBCTHHHHHHHHHHHHHS-CSSSSSSEEE
T ss_pred ------------CCCHHHhhh----------------------hHHHHhccCCcHHHHHHHHHHHHHHh-CCCCCCCCEE
Confidence 788776421 11223789999999999999999998 66655 4899
Q ss_pred EEEEeccccceeeEEEEEec
Q 012253 357 IMFSYGSGLTATMFSLQLQE 376 (467)
Q Consensus 357 ll~syGsG~~~~~~~~~~~~ 376 (467)
++++||+|++|+++++++..
T Consensus 352 ll~~fG~G~s~~~~ll~~~~ 371 (372)
T d1teda_ 352 VAFAFGPGVTVEGMLFDIIR 371 (372)
T ss_dssp EEEEEETTTEEEEEEEEECC
T ss_pred EEEEEcHHHhHHHHhheeec
Confidence 99999999999999999864
|
| >d1xpma1 c.95.1.2 (A:2-167) 3-hydroxy-3-methylglutaryl CoA synthase MvaS {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Chalcone synthase-like domain: 3-hydroxy-3-methylglutaryl CoA synthase MvaS species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=1.1e-35 Score=267.98 Aligned_cols=164 Identities=26% Similarity=0.423 Sum_probs=151.2
Q ss_pred eeEEeEEEEecCCceeehhHHhhhhCCCcCeeEEeccceEeeccCCCCCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEec
Q 012253 8 NVGILALDIYFPPTCVLQEALEVHDGVSKGKYTVGLGQDCMAFCSEVEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSE 87 (467)
Q Consensus 8 ~vgI~ai~~y~P~~~v~~~el~~~~g~~~~k~~~Gig~r~~av~~~~Ed~~~ma~~Aa~~aL~~agi~~~~Id~Li~~Te 87 (467)
.|||.++++|+|+++|+++|+++..|.+++|+..++|.+++++++++|++.+||++|++++|++. ++++||+||++|+
T Consensus 1 ~VgI~~~~~ylP~~~v~~~e~~~~~g~~~~~i~~~~Gi~~r~~~~~~E~~~~ma~~Aa~~al~~~--~~~~id~li~~t~ 78 (166)
T d1xpma1 1 AIGIDKINFYVPKYYVDMAKLAEARQVDPNKFLIGIGQTEMAVSPVNQDIVSMGANAAKDIITDE--DKKKIGMVIVATE 78 (166)
T ss_dssp CEEEEEEEEECCSEEEEHHHHHHHTTSCHHHHHTTTCCSEEEECCTTCCHHHHHHHHHHTTCCHH--HHHHEEEEEEECS
T ss_pred CeeEeEEEEECCCeEEcHHHHHHHhCCCHHHHHHhcCcEEEEeCCCccCHHHHHHHHHHhhhccc--cCCCCCeEEEecc
Confidence 48999999999999999999999999999998766666777788999999999999999999885 5789999999999
Q ss_pred cCCCCCCcHHHHHHHHhcccCCCCeeEEeeCCcChHHHHHHHHHHHHHHhCCCCCCEEEEEEeecccccC-CCCCCcccc
Q 012253 88 TVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDSAVYAE-GPARPTGGA 166 (467)
Q Consensus 88 s~~~~~ps~a~~v~~~Lgl~G~~~~~~~di~~aC~gg~~AL~~A~~~l~a~~~~~~~aLVV~sD~~~y~~-~~~~~t~Gd 166 (467)
++++..|+.++.|+++||+ .+++.+||++++|+|+++||++|.+|++++. .+++|||++|+..+.. .+.+++|||
T Consensus 79 ~~~~~~p~~a~~v~~~lg~--~~~~~~~dv~~~C~g~~~al~~A~~~i~~~~--~~~alvV~sd~~~~~~~~~~~~~fGD 154 (166)
T d1xpma1 79 SAVDAAKAAAVQIHNLLGI--QPFARCFEMKEACYAATPAIQLAKDYLATRP--NEKVLVIATDTARYGLNSGGEPTQGA 154 (166)
T ss_dssp SCSBSSSCHHHHHHHHTTC--CSSCEEEEEESTTTTHHHHHHHHHHHHTTCT--TCEEEEEEEEEECCCTTCSSGGGCEE
T ss_pred ccccccchhHHHHHHhhcc--ccceEEeeecccHHHHHHHHHHHhhHHhcCC--CCeEEEEEEceEeccCCCCCCccCCC
Confidence 9999999999999999998 6789999999999999999999999999994 4999999999986664 457899999
Q ss_pred ceeEEEecCCC
Q 012253 167 AAVAMLIGPDA 177 (467)
Q Consensus 167 GAvA~Ll~~~~ 177 (467)
||+|+||+++|
T Consensus 155 GA~A~ll~~~P 165 (166)
T d1xpma1 155 GAVAMVIAHNP 165 (166)
T ss_dssp EEEEEEEEESC
T ss_pred eeEEEEEecCC
Confidence 99999999987
|
| >d1hnja1 c.95.1.2 (A:1-174) Ketoacyl-ACP synthase III (FabH) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Chalcone synthase-like domain: Ketoacyl-ACP synthase III (FabH) species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=6.1e-34 Score=258.31 Aligned_cols=164 Identities=21% Similarity=0.228 Sum_probs=148.6
Q ss_pred ceeEEeEEEEecCCceeehhHHhhhhCCCcCeeE--EeccceEeeccCCCCCHHHHHHHHHHHHHHHcCCCcCCcCEEEE
Q 012253 7 KNVGILALDIYFPPTCVLQEALEVHDGVSKGKYT--VGLGQDCMAFCSEVEDVISMSLTVVTSLLEKYKIDPTQIGRLEV 84 (467)
Q Consensus 7 ~~vgI~ai~~y~P~~~v~~~el~~~~g~~~~k~~--~Gig~r~~av~~~~Ed~~~ma~~Aa~~aL~~agi~~~~Id~Li~ 84 (467)
|..+|.++|.|+|+.+++++|+++..|.+++|+. +|+.+|+ ++.++|+..+||++|+++||++++++|++||+||+
T Consensus 1 m~a~I~g~g~ylP~~~v~n~el~~~~~~~~~~i~~~~Gi~~r~--~~~~~~~~~~la~~Aa~~al~~a~~~~~~Id~li~ 78 (174)
T d1hnja1 1 MYTKIIGTGSYLPEQVRTNADLEKMVDTSDEWIVTRTGIRERH--IAAPNETVSTMGFEAATRAIEMAGIEKDQIGLIVV 78 (174)
T ss_dssp CEEEEEEEEEECCSEEEEHHHHHTTSSCCHHHHHHHHCCCEEE--ECCTTCCHHHHHHHHHHHHHHHHTCCGGGCCEEEE
T ss_pred CccEEEEEEEECCCCcccHHHHHHHhCCCHHHHHhccCcceee--ecCCCccchHHHHHHHHHhhhhcccccccccEEEE
Confidence 5689999999999999999999999999999885 4555554 66889999999999999999999999999999999
Q ss_pred EeccCCCCCCcHHHHHHHHhcccCCCCeeEEeeCCcChHHHHHHHHHHHHHHhCCCCCCEEEEEEeecc-cccCCCC---
Q 012253 85 GSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDSA-VYAEGPA--- 160 (467)
Q Consensus 85 ~Tes~~~~~ps~a~~v~~~Lgl~G~~~~~~~di~~aC~gg~~AL~~A~~~l~a~~~~~~~aLVV~sD~~-~y~~~~~--- 160 (467)
+|+++++..|+.+++||++||+ +++.+||++++|+|++.||++|..|+++|.+ ++||||++|+. ++.+..+
T Consensus 79 ~s~~~~~~~P~~a~~v~~~Lgl---~~~~~~di~~~C~g~~~al~~A~~~i~sg~~--~~~Lvv~~e~~S~~~~~~d~~~ 153 (174)
T d1hnja1 79 ATTSATHAFPSAACQIQSMLGI---KGCPAFDVAAACAGFTYALSVADQYVKSGAV--KYALVVGSDVLARTCDPTDRGT 153 (174)
T ss_dssp ECSCCSCSSSCHHHHHHHHHTC---CSSCEEEECCGGGHHHHHHHHHHHHHHTTSC--SEEEEEEEECHHHHSCTTCHHH
T ss_pred ecCCccccccchhhhhhhccCC---CchhhhhhhhhhccHHHHHHHHHHHHhcCCc--ceeEEEeeehhhcccCCCCCCe
Confidence 9999999999999999999998 6799999999999999999999999999965 99999999998 4444433
Q ss_pred CCccccceeEEEecCCC
Q 012253 161 RPTGGAAAVAMLIGPDA 177 (467)
Q Consensus 161 ~~t~GdGAvA~Ll~~~~ 177 (467)
.++|||||+|+||++++
T Consensus 154 ~~lfGDgA~A~vl~~~~ 170 (174)
T d1hnja1 154 IIIFGDGAGAAVLAASE 170 (174)
T ss_dssp HTTBCCEEEEEEEEEES
T ss_pred EEEeceeeEEEEEEeCC
Confidence 46899999999999865
|
| >d1mzja1 c.95.1.2 (A:3-183) Priming beta-ketosynthase from the r1128 polyketide biosynthetic pathway {Streptomyces sp. r1128 [TaxId: 140437]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Chalcone synthase-like domain: Priming beta-ketosynthase from the r1128 polyketide biosynthetic pathway species: Streptomyces sp. r1128 [TaxId: 140437]
Probab=100.00 E-value=7.8e-33 Score=252.47 Aligned_cols=167 Identities=20% Similarity=0.198 Sum_probs=149.5
Q ss_pred CCCceeEEeEEEEecCCceeehhHHhhhhCCCcCeeE--EeccceEeeccCCCCCHHHHHHHHHHHHHHHcCCCcCCcCE
Q 012253 4 WHPKNVGILALDIYFPPTCVLQEALEVHDGVSKGKYT--VGLGQDCMAFCSEVEDVISMSLTVVTSLLEKYKIDPTQIGR 81 (467)
Q Consensus 4 ~~~~~vgI~ai~~y~P~~~v~~~el~~~~g~~~~k~~--~Gig~r~~av~~~~Ed~~~ma~~Aa~~aL~~agi~~~~Id~ 81 (467)
.+....+|.++|.|+|+++++++|+++..|.+++++. +|+.+|+ ++.++|++.+|+++|+++||++++++|++||+
T Consensus 5 ~~~~~arI~g~g~ylP~~~v~n~e~~~~~~~~~~~i~~~tGi~~R~--~~~~~e~~~~ma~~Aa~~aL~~a~~~~~dId~ 82 (181)
T d1mzja1 5 PERRFSRVLGVGSYRPRREVSNKEVCTWIDSTEEWIETRTGIRSRR--IAEPDETIQVMGVAASRRALEHAGVDPAEIDL 82 (181)
T ss_dssp CCCCEEEEEEEEEECCSCEEEHHHHTTTSSCCHHHHHHHHCCSEEE--CCCTTCCHHHHHHHHHHHHHHHHTCCGGGCCE
T ss_pred CCCCccEEEEEEEECCCceecHHHHHHHcCCCHHHHHhccCcceeh--hhccCCcHHHHhHHHHHhhhhhccCChhHCeE
Confidence 3445589999999999999999999999999988874 5777665 66889999999999999999999999999999
Q ss_pred EEEEeccCCCCCCcHHHHHHHHhcccCCCCeeEEeeCCcChHHHHHHHHHHHHHHhCCCCCCEEEEEEeecc-cccCC--
Q 012253 82 LEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDSA-VYAEG-- 158 (467)
Q Consensus 82 Li~~Tes~~~~~ps~a~~v~~~Lgl~G~~~~~~~di~~aC~gg~~AL~~A~~~l~a~~~~~~~aLVV~sD~~-~y~~~-- 158 (467)
||++|+++++..|+.+.+||++|+. +++.+||+++||+|++.||++|..|++++.. ++||||++|.. .+.+.
T Consensus 83 li~~s~~~~~~~p~~a~~v~~~l~~---~~~~~~Dv~~~C~g~~~aL~~A~~~i~~~~~--~~~LvV~~e~~s~~~~~~d 157 (181)
T d1mzja1 83 VVVSTMTNFVHTPPLSVAIAHELGA---DNAGGFDLSAACAGFCHALSIAADAVESGGS--RHVLVVATERMTDVIDLAD 157 (181)
T ss_dssp EEEECSCCCCCSSCHHHHHHHHHTC---TTCEEEEEECGGGHHHHHHHHHHHHHHHSSC--SCEEEEEEEEGGGGSCSSC
T ss_pred EEEeccCCccccccHHHHHHHhhcC---CCccceeHHhhhccHHHHHHHHhCHhhcCCC--ceeEEeeeccccccCCCCC
Confidence 9999999999999999999999986 7899999999999999999999999999954 99999999998 33333
Q ss_pred -CCCCccccceeEEEecCCC
Q 012253 159 -PARPTGGAAAVAMLIGPDA 177 (467)
Q Consensus 159 -~~~~t~GdGAvA~Ll~~~~ 177 (467)
...++|||||+|+||++++
T Consensus 158 ~~~~~lfGDGAaA~ll~~~~ 177 (181)
T d1mzja1 158 RSLSFLFGDGAGAAVVGPSD 177 (181)
T ss_dssp TTTTTTBCEEEEEEEEEEES
T ss_pred cceEEEeeeeeEEEEEEeCC
Confidence 3457899999999999764
|
| >d1ub7a1 c.95.1.2 (A:2-173) Ketoacyl-ACP synthase III (FabH) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Chalcone synthase-like domain: Ketoacyl-ACP synthase III (FabH) species: Thermus thermophilus [TaxId: 274]
Probab=99.97 E-value=6.1e-32 Score=244.50 Aligned_cols=161 Identities=19% Similarity=0.145 Sum_probs=145.7
Q ss_pred EEeEEEEecCCceeehhHHhhhhCCCcCeeE--EeccceEeeccCCCCCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEec
Q 012253 10 GILALDIYFPPTCVLQEALEVHDGVSKGKYT--VGLGQDCMAFCSEVEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSE 87 (467)
Q Consensus 10 gI~ai~~y~P~~~v~~~el~~~~g~~~~k~~--~Gig~r~~av~~~~Ed~~~ma~~Aa~~aL~~agi~~~~Id~Li~~Te 87 (467)
||.++++|+|+++|+++++++..+.+.+++. +|+.+|+ ++.++|+..+|+++|+++||+++|++|+|||+||++|.
T Consensus 2 gI~~ig~ylP~~~v~n~~~~~~~~~~~~~i~~~~Gi~~R~--~~~~~e~~~~ma~~Aa~~aL~~agi~~~dIdlli~~s~ 79 (172)
T d1ub7a1 2 GILALGAYVPERVMTNADFEAYLDTSDEWIVTRTGIKERR--VAAEDEYTSDLAFKAVEDLLRRHPGALEGVDAVIVATN 79 (172)
T ss_dssp EEEEEEEECCSEEEEHHHHHTTSSCCHHHHHHHTCCCEEE--ECCTTCCHHHHHHHHHHHHHHHSTTTTTTEEEEEEECS
T ss_pred ceeEEEEECCCceEcHHHHHHHhCCCHHHHHhccCceeee--eccccccccHHHHHHHHHHHhhcCcccccceEEEEecc
Confidence 8999999999999999999999999888774 5776666 55889999999999999999999999999999999999
Q ss_pred cCCCCCCcHHHHHHHHhcccCCCCeeEEeeCCcChHHHHHHHHHHHHHHhCCCCCCEEEEEEeecc-cccCCCC---CCc
Q 012253 88 TVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDSA-VYAEGPA---RPT 163 (467)
Q Consensus 88 s~~~~~ps~a~~v~~~Lgl~G~~~~~~~di~~aC~gg~~AL~~A~~~l~a~~~~~~~aLVV~sD~~-~y~~~~~---~~t 163 (467)
|+++..|+.+.+|+++||. ++.+||+.++|.|++.||++|..|++++.+ ++||||++|.. ++.++.+ ..+
T Consensus 80 t~~~~~p~~a~~v~~~Lg~----~~~~~di~~~C~g~~~al~~a~~~~~~~~~--~~~Lvv~~e~~S~~~~~~d~~~~~l 153 (172)
T d1ub7a1 80 TPDALFPDTAALVQARFGL----KAFAYDLLAGCPGWIYALAQAHALVEAGLA--QKVLAVGAEALSKIIDWNDRATAVL 153 (172)
T ss_dssp SCSEEESCHHHHHHHHTTC----CCEEEEEECSTTHHHHHHHHHHHHHHTTSC--SEEEEEEEECGGGTSCTTCHHHHTT
T ss_pred cccccccchHHHHHHHhcc----CccceeehhccccHHHHHHHHhhhhhcCCc--ceeEEecccccccccCCCCcCeEEE
Confidence 9999999999999999874 578999999999999999999999999965 99999999999 4445443 467
Q ss_pred cccceeEEEecCCCC
Q 012253 164 GGAAAVAMLIGPDAP 178 (467)
Q Consensus 164 ~GdGAvA~Ll~~~~~ 178 (467)
|||||+|+||++.+.
T Consensus 154 fGDgAaA~ll~~~~~ 168 (172)
T d1ub7a1 154 FGDGGGAAVVGKVRE 168 (172)
T ss_dssp BCCEEEEEEEECCCT
T ss_pred ecceeEEEEEEEcCC
Confidence 899999999998864
|
| >d1u0ma1 c.95.1.2 (A:2-201) Putative polyketide synthase SCO1206 {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Chalcone synthase-like domain: Putative polyketide synthase SCO1206 species: Streptomyces coelicolor [TaxId: 1902]
Probab=99.94 E-value=4.5e-27 Score=217.35 Aligned_cols=162 Identities=14% Similarity=0.118 Sum_probs=132.9
Q ss_pred EEeEEEEecCCceeehhHHhhhhC----CCcC--e---e--EEeccceEeeccCCC---------------CCHHHHHHH
Q 012253 10 GILALDIYFPPTCVLQEALEVHDG----VSKG--K---Y--TVGLGQDCMAFCSEV---------------EDVISMSLT 63 (467)
Q Consensus 10 gI~ai~~y~P~~~v~~~el~~~~g----~~~~--k---~--~~Gig~r~~av~~~~---------------Ed~~~ma~~ 63 (467)
.|.++++|+|+++|+|+|+.+... .++. + + ++||.+|++..+.++ |.+.+|+++
T Consensus 2 ~i~~~a~~~P~~~v~n~e~~e~~~~~~~~~~~~~~~~~i~~~tGI~~R~~~~~~e~~~~~~~~~~~~~~~~~~a~~la~~ 81 (200)
T d1u0ma1 2 TLCRPSVSVPEHVITMEETLELARRRHTDHPQLPLALRLIENTGVRTRHIVQPIEDTLEHPGFEDRNKVYEREAKSRVPA 81 (200)
T ss_dssp EECCCEEECCSEEEEHHHHHHHHHHHHTTCTTHHHHHHHHHHTCCCEEEESSCHHHHTSCCCHHHHHHHHHHHHHHHHHH
T ss_pred eeccceEECCCeeEcHHHHHHHHHHhCCCchhHHHHHHHHHhCCCCeeeEECChhhhccCCCHHHHHHHHHHHHHHHHHH
Confidence 588999999999999999987631 1221 2 2 369999987532211 358899999
Q ss_pred HHHHHHHHcCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHhcccCCCCeeEEeeC-CcChHHHHHHHHHHHHHHhCCCCC
Q 012253 64 VVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDST-NACYGGTAALFNCVNWVESASWDG 142 (467)
Q Consensus 64 Aa~~aL~~agi~~~~Id~Li~~Tes~~~~~ps~a~~v~~~Lgl~G~~~~~~~di~-~aC~gg~~AL~~A~~~l~a~~~~~ 142 (467)
|+++||+++|++|+|||+||++|.|+. ..|+.+++|+++||+ .+++..+|+. .||+|++.||++|.+++++| +.
T Consensus 82 Aa~~aL~~ag~~~~dId~lI~~s~t~~-~~P~~aa~v~~~lg~--~~~~~~~~i~~~gC~g~~~al~~A~~~l~~~--~~ 156 (200)
T d1u0ma1 82 VIQRALDDAELLATDIDVIIYVSCTGF-MMPSLTAWLINEMGF--DSTTRQIPIAQLGCAAGGAAINRAHDFCTAY--PE 156 (200)
T ss_dssp HHHHHHHHHTCCGGGCSEEEEECSSSC-CSSCHHHHHHHHTTC--CTTCEEEEECSCGGGHHHHHHHHHHHHHHHS--TT
T ss_pred HHHHHHHHcCCChhhhheEEEeccCCC-CcchhHHHHHHHHhc--CCCeeEeccccchhhHHHHHHHHHHHHHHhC--CC
Confidence 999999999999999999999999875 589999999999998 7889999996 69999999999999999999 45
Q ss_pred CEEEEEEeecc-c-ccCCC-C------CCccccceeEEEecCC
Q 012253 143 RYGLVVCTDSA-V-YAEGP-A------RPTGGAAAVAMLIGPD 176 (467)
Q Consensus 143 ~~aLVV~sD~~-~-y~~~~-~------~~t~GdGAvA~Ll~~~ 176 (467)
++||||++|.+ . +.... . ..+|||||+|+||+.+
T Consensus 157 ~~vLvv~~e~~S~~~~~~d~~~~~~~~~~lFgDGAaA~ll~~~ 199 (200)
T d1u0ma1 157 ANALIVACEFCSLCYQPTDLGVGSLLCNGLFGDGIAAAVVRGR 199 (200)
T ss_dssp CEEEEEEEEEGGGGCCTTCCSHHHHHHHHHBCEEEEEEEEETT
T ss_pred CEEEEEEEeccccccCCCCCChhhhhcccccccccEEEEEecC
Confidence 99999999998 2 22221 1 1368999999999875
|
| >d1bi5a1 c.95.1.2 (A:1-235) Chalcone synthase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Chalcone synthase-like domain: Chalcone synthase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.94 E-value=8.2e-27 Score=220.70 Aligned_cols=166 Identities=19% Similarity=0.277 Sum_probs=134.0
Q ss_pred eeEEeEEEEecCCceeehhHHhhhhC----CCc--------Cee--EEeccceEeeccCC--------------------
Q 012253 8 NVGILALDIYFPPTCVLQEALEVHDG----VSK--------GKY--TVGLGQDCMAFCSE-------------------- 53 (467)
Q Consensus 8 ~vgI~ai~~y~P~~~v~~~el~~~~g----~~~--------~k~--~~Gig~r~~av~~~-------------------- 53 (467)
.+.|.++|.|+|+++|+|+++.++.. .+. .++ ..||.+|+...++.
T Consensus 16 pa~I~giGt~~P~~~v~n~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~GI~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (235)
T d1bi5a1 16 PATILAIGTANPANCVEQSTYPDFYFKITNSEHKTELKEKFQRMCDKSMIKRRYMYLTEEILKENPNVCEYMAPSLDARQ 95 (235)
T ss_dssp CCEEEEEEEECCSCEEESTTHHHHHHHHTTCTTCHHHHHHHHHHHHHSCCCEEECSCCHHHHHTCHHHHSSSCSCHHHHH
T ss_pred CcEEEEEEEECCCcEEeHHHHHHHHHHhhccccchhhhhhhhhhhcccCCceeEEecChHhhccCcccccccCccHHHHH
Confidence 47899999999999999999987642 111 112 37899888654321
Q ss_pred ---CCCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHhcccCCCCeeEEee-CCcChHHHHHHH
Q 012253 54 ---VEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDS-TNACYGGTAALF 129 (467)
Q Consensus 54 ---~Ed~~~ma~~Aa~~aL~~agi~~~~Id~Li~~Tes~~~~~ps~a~~v~~~Lgl~G~~~~~~~di-~~aC~gg~~AL~ 129 (467)
.|++.+|+++|++++|+++|++++|||+||++|+|+++ .|+.++.+++.|++ .+++..+++ +.||+|++.||+
T Consensus 96 ~~~~~~~~~la~~Aa~~aL~~a~~~~~dId~lI~~t~t~~~-~p~~~a~~~~~l~~--~~~~~~~~~~~~~C~g~~~al~ 172 (235)
T d1bi5a1 96 DMVVVEVPRLGKEAAVKAIKEWGQPKSKITHLIVCTTSGVD-MPGADYQLTKLLGL--RPYVKRYMMYQQGCFAGGTVLR 172 (235)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCSCGGGCCEEEEEESSCCC-SSCHHHHHHHHHTC--CTTCEEEEEESCCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCChhHCcEEEEecccCCc-cCccHHHHHHHHhc--CCCceEEeeecCccchHHHHHH
Confidence 13678999999999999999999999999999999876 68888899999887 677777765 679999999999
Q ss_pred HHHHHHHhCCCCCCEEEEEEeeccc-ccCCCCC---------CccccceeEEEecCCCC
Q 012253 130 NCVNWVESASWDGRYGLVVCTDSAV-YAEGPAR---------PTGGAAAVAMLIGPDAP 178 (467)
Q Consensus 130 ~A~~~l~a~~~~~~~aLVV~sD~~~-y~~~~~~---------~t~GdGAvA~Ll~~~~~ 178 (467)
+|.+++++| +.++||||++|++. .-+.++. .+|||||+|+||+.+|.
T Consensus 173 ~A~~~i~~~--~~~~vLvV~~E~~S~~~~~~d~~~~~~~v~~~lFGDGA~A~vl~~~p~ 229 (235)
T d1bi5a1 173 LAKDLAENN--KGARVLVVCSEVTAVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDPV 229 (235)
T ss_dssp HHHHHHHTS--TTCEEEEEEEECGGGTCCCCCTTCHHHHHHHHHBCCEEEEEEEESSCC
T ss_pred HHHHHHHcC--CCCeEEEEEeeecceecCCCCCCchhhhcceeeeccceEEEEEecCCC
Confidence 999999999 45999999999982 2222222 36899999999998864
|
| >d1mzja2 c.95.1.2 (A:184-336) Priming beta-ketosynthase from the r1128 polyketide biosynthetic pathway {Streptomyces sp. r1128 [TaxId: 140437]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Chalcone synthase-like domain: Priming beta-ketosynthase from the r1128 polyketide biosynthetic pathway species: Streptomyces sp. r1128 [TaxId: 140437]
Probab=99.78 E-value=3e-19 Score=157.19 Aligned_cols=120 Identities=21% Similarity=0.251 Sum_probs=101.0
Q ss_pred CCCCceecCcchHHHHHHHHHHHHHHHHHHHHhhhcCCCCccccceeccCCchHHHHHHHHHhhhhhhhccccCchhhHH
Q 012253 202 ASEYPVVDGKLSQTCYLMALDSCYKYFCQKFEKLEGRQFSMLDVDYFVFHSPYNKLVQKSFARLFFNDFLRNASSVDEIA 281 (467)
Q Consensus 202 ~~~~~~vdG~~s~~~y~~a~~~~~~~~~~~~~~~~~~~~~~~d~d~~i~H~p~~k~~~k~~~~l~~~~~~~~~~~~~~~~ 281 (467)
+..+..|||+.+ |..++....+.+.+.+ ++++++.+|||+|++||++.+|++.+.++|
T Consensus 31 ~~~~~~m~G~~v---~~~av~~vp~~i~~~L---~~~gl~~~dId~~i~Hq~~~~~~~~v~~~l---------------- 88 (153)
T d1mzja2 31 GRPALVMDGKRV---FRWAVADVVPAAREAL---EVAGLTVGDLVAFVPHQANLRIIDVLVDRL---------------- 88 (153)
T ss_dssp CSCCEEECHHHH---HHHHHHHHHHHHHHHH---HTTTCCGGGCSEEEECCSCHHHHHHHHHHH----------------
T ss_pred CCceEEEcCHHH---HHHHHHHHHHHHHHHH---HHhCCCcccCCEEEEcCCcHHHHHHHHHHh----------------
Confidence 344678999865 7777777666665555 677899999999999999999999999888
Q ss_pred hhhcCCCCCCCcchhhhhhhHHHHHHHHHHHHhhhhcCCCcccccccCccccchHHHHHHHHHhhcCcCCCCCEEEEEEe
Q 012253 282 KEKLAPYSTLSDVESYQSRDLEKASQQVAKQLYDLKVQPSTLIPKQVGNMYTASLYAAFASLLHEKHSSLEGKRVIMFSY 361 (467)
Q Consensus 282 ~~~l~~~~g~~~e~~~~~~~~~k~~~~~~~~~~~~~~~~s~~~~~~~GN~~taS~~l~L~~~l~~~~~~~~G~~ill~sy 361 (467)
+++.++.+. .+.+++|||+|||+|++|..++++ +++++|++|+|++|
T Consensus 89 --------gi~~ek~~~------------------------~~~~~~GNt~Sasip~~L~~~~~~-~~~~~Gd~ill~~f 135 (153)
T d1mzja2 89 --------GVPEHVVVS------------------------RDAEDTGNTSSASVALALDRLVRS-GAVPGGGPALMIGF 135 (153)
T ss_dssp --------TCCTTSEEC------------------------CTHHHHCBCTTHHHHHHHHHHHHH-TSSCTTCEEEEEEE
T ss_pred --------CCCchhcch------------------------hhhhhcCCcccchHHHHHHHHHHc-CCCCCCCEEEEEEE
Confidence 787775421 123789999999999999999999 78999999999999
Q ss_pred ccccceeeEEEEEec
Q 012253 362 GSGLTATMFSLQLQE 376 (467)
Q Consensus 362 GsG~~~~~~~~~~~~ 376 (467)
|+|++|++.+++|.+
T Consensus 136 G~G~s~~~~~l~~~~ 150 (153)
T d1mzja2 136 GAGLSYAGQALLLPD 150 (153)
T ss_dssp ETTTEEEEEEEECCC
T ss_pred chhhhhhEEEEEecC
Confidence 999999999999986
|
| >d1u6ea2 c.95.1.2 (A:175-317) Ketoacyl-ACP synthase III (FabH) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Chalcone synthase-like domain: Ketoacyl-ACP synthase III (FabH) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.77 E-value=5.9e-19 Score=154.37 Aligned_cols=117 Identities=18% Similarity=0.207 Sum_probs=98.1
Q ss_pred CCCceecCcchHHHHHHHHHHHHHHHHHHHHhhhcCCCCccccceeccCCchHHHHHHHHHhhhhhhhccccCchhhHHh
Q 012253 203 SEYPVVDGKLSQTCYLMALDSCYKYFCQKFEKLEGRQFSMLDVDYFVFHSPYNKLVQKSFARLFFNDFLRNASSVDEIAK 282 (467)
Q Consensus 203 ~~~~~vdG~~s~~~y~~a~~~~~~~~~~~~~~~~~~~~~~~d~d~~i~H~p~~k~~~k~~~~l~~~~~~~~~~~~~~~~~ 282 (467)
..|..|||+.+ |..++....+.+.+.+ ++++++++|||+|++||++.++++.+.++|
T Consensus 32 ~~~~~m~G~~V---f~~a~~~v~~~i~~~L---~~~gl~~~dId~~i~Hqa~~~i~~~v~~~l----------------- 88 (148)
T d1u6ea2 32 RPFVRLEGPAV---FRWAAFKMGDVGRRAM---DAAGVRPDQIDVFVPHQANSRINELLVKNL----------------- 88 (148)
T ss_dssp CCCEEECHHHH---HHHHHHHHHHHHHHHH---HHHTCCGGGCCEEEECCSCHHHHHHHHHHH-----------------
T ss_pred CccEEeecHHH---HHHHHHHHHHHHHHHH---HHcCCCcccccEEEeccccHHHHHHHHHhc-----------------
Confidence 34788999876 6667666665555544 556899999999999999999999999988
Q ss_pred hhcCCCCCCCcchhhhhhhHHHHHHHHHHHHhhhhcCCCcccccccCccccchHHHHHHHHHhhcCcCCCCCEEEEEEec
Q 012253 283 EKLAPYSTLSDVESYQSRDLEKASQQVAKQLYDLKVQPSTLIPKQVGNMYTASLYAAFASLLHEKHSSLEGKRVIMFSYG 362 (467)
Q Consensus 283 ~~l~~~~g~~~e~~~~~~~~~k~~~~~~~~~~~~~~~~s~~~~~~~GN~~taS~~l~L~~~l~~~~~~~~G~~ill~syG 362 (467)
|+++++... .+.+++|||+|||+|++|.+++++ +++++|++|+|++||
T Consensus 89 -------gl~~ek~~~------------------------~~~~~~GNt~sasip~~L~~a~~~-g~i~~Gd~vll~gfG 136 (148)
T d1u6ea2 89 -------QLRPDAVVA------------------------NDIEHTGNTSAASIPLAMAELLTT-GAAKPGDLALLIGYG 136 (148)
T ss_dssp -------TCCTTCEEC------------------------CTHHHHCBCGGGHHHHHHHHHHHH-TSSCTTCEEEEEEEE
T ss_pred -------CCCchhhhh------------------------hhHHhhCCCccchHHHHHHHHHHc-CCCCCCCEEEEEEEc
Confidence 788775321 123799999999999999999999 889999999999999
Q ss_pred cccceeeEEEEE
Q 012253 363 SGLTATMFSLQL 374 (467)
Q Consensus 363 sG~~~~~~~~~~ 374 (467)
+|++|++.++|+
T Consensus 137 ~G~s~~a~llrv 148 (148)
T d1u6ea2 137 AGLSYAAQVVRM 148 (148)
T ss_dssp TTTEEEEEEEEC
T ss_pred hhhhheEEEEeC
Confidence 999999999875
|
| >d1hnja2 c.95.1.2 (A:175-317) Ketoacyl-ACP synthase III (FabH) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Chalcone synthase-like domain: Ketoacyl-ACP synthase III (FabH) species: Escherichia coli [TaxId: 562]
Probab=99.77 E-value=1e-18 Score=152.02 Aligned_cols=115 Identities=15% Similarity=0.214 Sum_probs=96.6
Q ss_pred CCceecCcchHHHHHHHHHHHHHHHHHHHHhhhcCCCCccccceeccCCchHHHHHHHHHhhhhhhhccccCchhhHHhh
Q 012253 204 EYPVVDGKLSQTCYLMALDSCYKYFCQKFEKLEGRQFSMLDVDYFVFHSPYNKLVQKSFARLFFNDFLRNASSVDEIAKE 283 (467)
Q Consensus 204 ~~~~vdG~~s~~~y~~a~~~~~~~~~~~~~~~~~~~~~~~d~d~~i~H~p~~k~~~k~~~~l~~~~~~~~~~~~~~~~~~ 283 (467)
.+..+||+.. |..++....+.+.+.+ ++++++++|||+|++||++.++++...++|
T Consensus 29 ~~~~m~G~~v---f~~av~~~~~~i~~~L---~~~g~~~~dId~~i~Hq~~~~~~~~~~~~l------------------ 84 (143)
T d1hnja2 29 IHLTMAGNEV---FKVAVTELAHIVDETL---AANNLDRSQLDWLVPHQANLRIISATAKKL------------------ 84 (143)
T ss_dssp CSCEECHHHH---HHHHHHHHHHHHHHHH---HHTTCCGGGCCEEEECCSCHHHHHHHHHHT------------------
T ss_pred ceEEEEChHH---hhhhhhhhhHHHHHHH---HHhhhcccccceEEeccCchHHHHHHHHhC------------------
Confidence 4567899876 6666666555554444 567899999999999999999999999888
Q ss_pred hcCCCCCCCcchhhhhhhHHHHHHHHHHHHhhhhcCCCcccccccCccccchHHHHHHHHHhhcCcCCCCCEEEEEEecc
Q 012253 284 KLAPYSTLSDVESYQSRDLEKASQQVAKQLYDLKVQPSTLIPKQVGNMYTASLYAAFASLLHEKHSSLEGKRVIMFSYGS 363 (467)
Q Consensus 284 ~l~~~~g~~~e~~~~~~~~~k~~~~~~~~~~~~~~~~s~~~~~~~GN~~taS~~l~L~~~l~~~~~~~~G~~ill~syGs 363 (467)
++++++.+ ...+++|||+|||+|++|..++++ +++++|++|+|++||+
T Consensus 85 ------~l~~~k~~-------------------------~~~~~~GN~~sasip~~L~~~~~~-~~~~~Gd~vll~g~G~ 132 (143)
T d1hnja2 85 ------GMSMDNVV-------------------------VTLDRHGNTSAASVPCALDEAVRD-GRIKPGQLVLLEAFGG 132 (143)
T ss_dssp ------TCCGGGBC-------------------------CCHHHHCBCGGGHHHHHHHHHHHT-TCSCTTCEEEEEEEET
T ss_pred ------ccchhhhh-------------------------hhhhhhcccccchHHHHHHHHHHh-CCCCCCCEEEEEEEeh
Confidence 78877643 123799999999999999999999 7899999999999999
Q ss_pred ccceeeEEEEE
Q 012253 364 GLTATMFSLQL 374 (467)
Q Consensus 364 G~~~~~~~~~~ 374 (467)
|++|++++++|
T Consensus 133 G~s~g~~llrw 143 (143)
T d1hnja2 133 GFTWGSALVRF 143 (143)
T ss_dssp TTEEEEEEEEC
T ss_pred hhhhEEEEEEC
Confidence 99999999987
|
| >d1ub7a2 c.95.1.2 (A:174-322) Ketoacyl-ACP synthase III (FabH) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Chalcone synthase-like domain: Ketoacyl-ACP synthase III (FabH) species: Thermus thermophilus [TaxId: 274]
Probab=99.74 E-value=3.2e-18 Score=149.90 Aligned_cols=116 Identities=22% Similarity=0.244 Sum_probs=96.6
Q ss_pred CceecCcchHHHHHHHHHHHHHHHHHHHHhhhcCCCCccccceeccCCchHHHHHHHHHhhhhhhhccccCchhhHHhhh
Q 012253 205 YPVVDGKLSQTCYLMALDSCYKYFCQKFEKLEGRQFSMLDVDYFVFHSPYNKLVQKSFARLFFNDFLRNASSVDEIAKEK 284 (467)
Q Consensus 205 ~~~vdG~~s~~~y~~a~~~~~~~~~~~~~~~~~~~~~~~d~d~~i~H~p~~k~~~k~~~~l~~~~~~~~~~~~~~~~~~~ 284 (467)
+..|||+.+ |..++....+.+.+.+ ++++++++|||+|++||++.++++.+.++|
T Consensus 33 ~~~M~G~~v---f~~a~~~vp~~i~~~L---~~~g~~~~dId~~i~Hqa~~~~~~~i~~~l------------------- 87 (149)
T d1ub7a2 33 RLYMNGREV---FKFAVRVMNTATLEAI---EKAGLTPEDIRLFVPHQANLRIIDAARERL------------------- 87 (149)
T ss_dssp SCEECHHHH---HHHHHHHHHHHHHHHH---HHHTCCGGGCSEEEECCSCHHHHHHHHHTT-------------------
T ss_pred cEEEccHHH---HHHHHHHHHHHHHHHH---HhhccccccccEEEeeccchHHHHHHHhhc-------------------
Confidence 467899765 6666665555554444 556899999999999999999999999888
Q ss_pred cCCCCCCCcchhhhhhhHHHHHHHHHHHHhhhhcCCCcccccccCccccchHHHHHHHHHhhcCcCCCCCEEEEEEeccc
Q 012253 285 LAPYSTLSDVESYQSRDLEKASQQVAKQLYDLKVQPSTLIPKQVGNMYTASLYAAFASLLHEKHSSLEGKRVIMFSYGSG 364 (467)
Q Consensus 285 l~~~~g~~~e~~~~~~~~~k~~~~~~~~~~~~~~~~s~~~~~~~GN~~taS~~l~L~~~l~~~~~~~~G~~ill~syGsG 364 (467)
++++++.+ ....++|||++||+|++|..++++ +++++|++|+|+++|+|
T Consensus 88 -----gi~~~k~~-------------------------~~~~~~Gn~~sasip~~L~~~~~~-~~~~~Gd~vll~g~G~G 136 (149)
T d1ub7a2 88 -----GLPWERVA-------------------------VNVDRYGNTSTASIPLALKEAVDA-GRIREGDHVLLVSFGAG 136 (149)
T ss_dssp -----TCCGGGBC-------------------------CCHHHHCBCGGGHHHHHHHHHHHH-TSSCTTCEEEEEEEETT
T ss_pred -----cchhhHHH-------------------------HHHHHhcCCcchhHHHHHHHHHHc-CCCCCCCEEEEEEEchH
Confidence 77777543 112689999999999999999999 78999999999999999
Q ss_pred cceeeEEEEEec
Q 012253 365 LTATMFSLQLQE 376 (467)
Q Consensus 365 ~~~~~~~~~~~~ 376 (467)
++|++.+++|..
T Consensus 137 ~s~ga~llrw~g 148 (149)
T d1ub7a2 137 LTWAAAVLTWGG 148 (149)
T ss_dssp TEEEEEEEECCC
T ss_pred hhhEEEEEEECC
Confidence 999999999963
|
| >d1u0ma2 c.95.1.2 (A:202-349) Putative polyketide synthase SCO1206 {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Chalcone synthase-like domain: Putative polyketide synthase SCO1206 species: Streptomyces coelicolor [TaxId: 1902]
Probab=99.68 E-value=2.7e-17 Score=143.68 Aligned_cols=94 Identities=21% Similarity=0.282 Sum_probs=82.5
Q ss_pred hcCCCCccccceeccCCchHHHHHHHHHhhhhhhhccccCchhhHHhhhcCCCCCCCcchhhhhhhHHHHHHHHHHHHhh
Q 012253 236 EGRQFSMLDVDYFVFHSPYNKLVQKSFARLFFNDFLRNASSVDEIAKEKLAPYSTLSDVESYQSRDLEKASQQVAKQLYD 315 (467)
Q Consensus 236 ~~~~~~~~d~d~~i~H~p~~k~~~k~~~~l~~~~~~~~~~~~~~~~~~~l~~~~g~~~e~~~~~~~~~k~~~~~~~~~~~ 315 (467)
++++++++|||+|++||++.++++.+.++| ++++++..
T Consensus 54 ~~~g~~~~did~~~~Hq~~~~i~~~i~~~L------------------------gl~~~k~~------------------ 91 (148)
T d1u0ma2 54 GEHGWDASDLDFYIVHAGGPRILDDLSTFL------------------------EVDPHAFR------------------ 91 (148)
T ss_dssp HTTSCCSSCCSCCEEECSHHHHHHHHHHHS------------------------CSCGGGGH------------------
T ss_pred HHhCCCHHHCCEEEECCCCHHHHHHHHHHh------------------------CCChhhhh------------------
Confidence 566899999999999999999999999888 78887642
Q ss_pred hhcCCCcccccccCccccchHHHHHHHHHhhcCcCCCCCEEEEEEeccccceeeEEEEEec
Q 012253 316 LKVQPSTLIPKQVGNMYTASLYAAFASLLHEKHSSLEGKRVIMFSYGSGLTATMFSLQLQE 376 (467)
Q Consensus 316 ~~~~~s~~~~~~~GN~~taS~~l~L~~~l~~~~~~~~G~~ill~syGsG~~~~~~~~~~~~ 376 (467)
.++.+.+++|||+|||+|++|..++++ +.+++|++|+|++||+|+++++.+++|+.
T Consensus 92 ----~s~~~l~~~GN~~sasi~~~L~~~~~~-~~~~~Gd~ill~gfG~G~s~~~~llrW~~ 147 (148)
T d1u0ma2 92 ----FSRATLTEYGNIASAVVLDALRRLFDE-GGVEEGARGLLAGFGPGITAEMSLGCWQT 147 (148)
T ss_dssp ----HHHHHHHHTCBCTTHHHHHHHHHHHHS-CCCCSSCCCEEEEEETTTEEEEEEEEEEC
T ss_pred ----HHHHHHHhcCCCCcchHHHHHHHHHHc-CCCCCCCEEEEEEEchHhEeeEEEEEEcc
Confidence 111223899999999999999999998 78899999999999999999999999974
|
| >d1ee0a2 c.95.1.2 (A:236-395) Pyrone synthase (PyS, chalcone synthase 2) {Gerbera hybrid cultivar [TaxId: 18101]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Chalcone synthase-like domain: Pyrone synthase (PyS, chalcone synthase 2) species: Gerbera hybrid cultivar [TaxId: 18101]
Probab=99.53 E-value=8.4e-15 Score=128.95 Aligned_cols=117 Identities=13% Similarity=0.149 Sum_probs=86.2
Q ss_pred eecCcchHHHHHHHHHHHHHHHHHHHHhhhcCCCCccccceeccCCchHHHHHHHHHhhhhhhhccccCchhhHHhhhcC
Q 012253 207 VVDGKLSQTCYLMALDSCYKYFCQKFEKLEGRQFSMLDVDYFVFHSPYNKLVQKSFARLFFNDFLRNASSVDEIAKEKLA 286 (467)
Q Consensus 207 ~vdG~~s~~~y~~a~~~~~~~~~~~~~~~~~~~~~~~d~d~~i~H~p~~k~~~k~~~~l~~~~~~~~~~~~~~~~~~~l~ 286 (467)
.+.++.+ +..+.+...+.+.+.+ ++++++.+|+|+|++||++.+|++.+.++|
T Consensus 35 ~~l~r~V---p~~~~~~v~~~v~~~l---~~~gl~~~di~~~v~Hqgg~~Ild~i~~~L--------------------- 87 (160)
T d1ee0a2 35 FQLHRDV---PLMVAKNIENAAEKAL---SPLGITDWNSVFWMVHPGGRAILDQVERKL--------------------- 87 (160)
T ss_dssp CEECTTH---HHHHHHHHHHHHHHHH---GGGTCCCGGGSEEEECCSSHHHHHHHHHHT---------------------
T ss_pred EeeCchh---HHHHHHHHHHHHHHHH---hhccCCccccceEeecCCcHHHHHHHHHHc---------------------
Confidence 4556665 3333333333333333 556899999999999999999999999998
Q ss_pred CCCCCCcchhhhhhhHHHHHHHHHHHHhhhhcCCCcccccccCccccchHHHHHHHHHhhc---CcCC---CCCEEEEEE
Q 012253 287 PYSTLSDVESYQSRDLEKASQQVAKQLYDLKVQPSTLIPKQVGNMYTASLYAAFASLLHEK---HSSL---EGKRVIMFS 360 (467)
Q Consensus 287 ~~~g~~~e~~~~~~~~~k~~~~~~~~~~~~~~~~s~~~~~~~GN~~taS~~l~L~~~l~~~---~~~~---~G~~ill~s 360 (467)
+++.++. ..|+.+.+++|||+|||+++.|..++++. +... .++++++++
T Consensus 88 ---~L~~~~l----------------------~~s~~vl~~yGNtSSaSI~~vL~~~~~~~~~~~~~~~g~~~d~~ll~a 142 (160)
T d1ee0a2 88 ---NLKEDKL----------------------RASRHVLSEYGNLISACVLFIIDEVRKRSMAEGKSTTGEGLDCGVLFG 142 (160)
T ss_dssp ---TCCTTTT----------------------HHHHHHHHHHCBCGGGHHHHHHHHHHHHHHHTTCSBTBTTBSEEEEEE
T ss_pred ---CCCHHHH----------------------HHHHHHHHHhCCCccchHHHHHHHHHhhhhhcCCCCcCCCcCEEEEEE
Confidence 7777653 22333448999999999999999988751 1122 237899999
Q ss_pred eccccceeeEEEEEe
Q 012253 361 YGSGLTATMFSLQLQ 375 (467)
Q Consensus 361 yGsG~~~~~~~~~~~ 375 (467)
||+|+++++++++-.
T Consensus 143 fG~Glt~~~~llr~~ 157 (160)
T d1ee0a2 143 FGPGMTVETVVLRSV 157 (160)
T ss_dssp EETTTEEEEEEEEEC
T ss_pred EChHHHHHHHHHeec
Confidence 999999999999854
|
| >d1u0ua2 c.95.1.2 (A:238-393) Dihydropinosylvin synthase {Scots pine (Pinus sylvestris) [TaxId: 3349]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Chalcone synthase-like domain: Dihydropinosylvin synthase species: Scots pine (Pinus sylvestris) [TaxId: 3349]
Probab=99.52 E-value=1.3e-14 Score=127.34 Aligned_cols=120 Identities=16% Similarity=0.179 Sum_probs=89.6
Q ss_pred CceecCcchHHHHHHHHHHHHHHHHHHHHhhhcCCCCccccceeccCCchHHHHHHHHHhhhhhhhccccCchhhHHhhh
Q 012253 205 YPVVDGKLSQTCYLMALDSCYKYFCQKFEKLEGRQFSMLDVDYFVFHSPYNKLVQKSFARLFFNDFLRNASSVDEIAKEK 284 (467)
Q Consensus 205 ~~~vdG~~s~~~y~~a~~~~~~~~~~~~~~~~~~~~~~~d~d~~i~H~p~~k~~~k~~~~l~~~~~~~~~~~~~~~~~~~ 284 (467)
+..+.|+.+...-.+.+..+++.++ .+++++.+|+|+|++||++.+|++.+.++|
T Consensus 29 ~~~~l~~~Vp~~v~~~i~~~~~~~l------~~~~~~~~did~~i~Hqgg~~Ild~v~~~L------------------- 83 (156)
T d1u0ua2 29 LTFQLKGAVPDLISANIENCMVEAF------SQFKISDWNKLFWVVHPGGRAILDRVEAKL------------------- 83 (156)
T ss_dssp EEEEECTTHHHHHHHHHHHHHHHHH------GGGTCCCGGGSEEEECCSCHHHHHHHHHHH-------------------
T ss_pred EEEEEcchhHHHHHHHHHHHHHHHH------HHcCCChhhCceEeecCCcHHHHHHHHHHh-------------------
Confidence 4455666653333344444444443 455799999999999999999999999988
Q ss_pred cCCCCCCCcchhhhhhhHHHHHHHHHHHHhhhhcCCCcccccccCccccchHHHHHHHHHhhc---CcC---CCCCEEEE
Q 012253 285 LAPYSTLSDVESYQSRDLEKASQQVAKQLYDLKVQPSTLIPKQVGNMYTASLYAAFASLLHEK---HSS---LEGKRVIM 358 (467)
Q Consensus 285 l~~~~g~~~e~~~~~~~~~k~~~~~~~~~~~~~~~~s~~~~~~~GN~~taS~~l~L~~~l~~~---~~~---~~G~~ill 358 (467)
++++++.. .|+.+.+++|||+|||+|+.|..++++. +.. ..|+++++
T Consensus 84 -----~L~~~k~~----------------------~s~~~l~~~GN~sSasip~~L~~~~~~~~~~~~~~~~~~~~~~~~ 136 (156)
T d1u0ua2 84 -----NLDPTKLI----------------------PTRHVMSEYGNMSSACVHFILDQTRKASLQNGCSTTGEGLEMGVL 136 (156)
T ss_dssp -----TCCTTTTH----------------------HHHHHHHHHCBCGGGHHHHHHHHHHHHHHHHTCSBSBTTBSEEEE
T ss_pred -----CCCcccch----------------------hhHHHHhhcCCCCcccHHHHHHHHHHhhhhccCCCcCCCCCEEEE
Confidence 77777542 2233347999999999999999987651 121 35699999
Q ss_pred EEeccccceeeEEEEEec
Q 012253 359 FSYGSGLTATMFSLQLQE 376 (467)
Q Consensus 359 ~syGsG~~~~~~~~~~~~ 376 (467)
++||+|+++++++++..+
T Consensus 137 ~gfG~Glt~~~~llr~~~ 154 (156)
T d1u0ua2 137 FGFGPGLTIETVVLKSVP 154 (156)
T ss_dssp EEEETTTEEEEEEEEECB
T ss_pred EEECHHHhHHHHHHeeCc
Confidence 999999999999998765
|
| >d1bi5a2 c.95.1.2 (A:236-389) Chalcone synthase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Chalcone synthase-like domain: Chalcone synthase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.51 E-value=1.3e-14 Score=127.04 Aligned_cols=118 Identities=14% Similarity=0.136 Sum_probs=87.8
Q ss_pred eecCcchHHHHHHHHHHHHHHHHHHHHhhhcCCCCccccceeccCCchHHHHHHHHHhhhhhhhccccCchhhHHhhhcC
Q 012253 207 VVDGKLSQTCYLMALDSCYKYFCQKFEKLEGRQFSMLDVDYFVFHSPYNKLVQKSFARLFFNDFLRNASSVDEIAKEKLA 286 (467)
Q Consensus 207 ~vdG~~s~~~y~~a~~~~~~~~~~~~~~~~~~~~~~~d~d~~i~H~p~~k~~~k~~~~l~~~~~~~~~~~~~~~~~~~l~ 286 (467)
.+.++.+...-.+.+..+...++ ++++++.+|+|+|++||++.++++.+.++|
T Consensus 30 ~~l~r~Vp~~i~~~i~~~~~~~l------~~~gl~~~di~~~v~Hqgg~~Ild~v~~~L--------------------- 82 (154)
T d1bi5a2 30 FHLLKDVPGIVSKNITKALVEAF------EPLGISDYNSIFWIAHPGGPAILDQVEQKL--------------------- 82 (154)
T ss_dssp CEECSCHHHHHHHHHHHHHHHHH------GGGTCCCTTSSEEEECCSSHHHHHHHHHHH---------------------
T ss_pred eecccchHHHHHHHHHHHHHHHH------HHcCCCccccceEeeccccHHHHHHHHHHh---------------------
Confidence 44556554333344444444433 456799999999999999999999999998
Q ss_pred CCCCCCcchhhhhhhHHHHHHHHHHHHhhhhcCCCcccccccCccccchHHHHHHHHHhhc---CcCCCC---CEEEEEE
Q 012253 287 PYSTLSDVESYQSRDLEKASQQVAKQLYDLKVQPSTLIPKQVGNMYTASLYAAFASLLHEK---HSSLEG---KRVIMFS 360 (467)
Q Consensus 287 ~~~g~~~e~~~~~~~~~k~~~~~~~~~~~~~~~~s~~~~~~~GN~~taS~~l~L~~~l~~~---~~~~~G---~~ill~s 360 (467)
++++++.. .|+.+.+++|||+|||+|+.|..++++. +....| +++++++
T Consensus 83 ---~L~~~~~~----------------------~s~~vl~~yGN~SSasi~~vL~~~~~~~~~~~~~~~g~~~~~~~~~a 137 (154)
T d1bi5a2 83 ---ALKPEKMN----------------------ATREVLSEYGNMSSACVLFILDEMRKKSTQNGLKTTGEGLEWGVLFG 137 (154)
T ss_dssp ---TCCGGGGH----------------------HHHHHHHHHCBCGGGHHHHHHHHHHHHHHHTTCSBTTTTCSEEEEEE
T ss_pred ---CCCHHHHH----------------------HhHHHHHhcCCCCcccHHHHHHHHHHhhhccCCcccCCCcCEEEEEE
Confidence 78877542 2333448999999999999999988752 222233 8899999
Q ss_pred eccccceeeEEEEEec
Q 012253 361 YGSGLTATMFSLQLQE 376 (467)
Q Consensus 361 yGsG~~~~~~~~~~~~ 376 (467)
||+|+++++++++..+
T Consensus 138 FG~Glt~~~~llr~~~ 153 (154)
T d1bi5a2 138 FGPGLTIETVVLRSVA 153 (154)
T ss_dssp EETTTEEEEEEEEECB
T ss_pred EchHHhHHHHHHhcCc
Confidence 9999999999998653
|
| >d1ulqa1 c.95.1.1 (A:3-275) Beta-ketoadipyl CoA thiolase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Beta-ketoadipyl CoA thiolase species: Thermus thermophilus [TaxId: 274]
Probab=98.76 E-value=2.3e-08 Score=94.84 Aligned_cols=97 Identities=7% Similarity=0.118 Sum_probs=84.6
Q ss_pred CCCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEeccCCC-CCCcHHHHHHHHhcccCCCCeeEEeeCCcChHHHHHHHHHH
Q 012253 54 VEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVID-KSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAALFNCV 132 (467)
Q Consensus 54 ~Ed~~~ma~~Aa~~aL~~agi~~~~Id~Li~~Tes~~~-~~ps~a~~v~~~Lgl~G~~~~~~~di~~aC~gg~~AL~~A~ 132 (467)
+.++.+|+..|++.+|++++++|++||.||+|+..+.. ....++-.+.-..|+ +..+.++.|+++|.+|+.||..|.
T Consensus 21 ~~~~~dL~~~a~~~al~~~~i~~~~Id~vi~G~v~~~g~~~~n~aR~~al~aGl--p~~vp~~tVn~~CaSg~~Ai~~a~ 98 (273)
T d1ulqa1 21 SVRPDDLLAHALSVLVDRSGVPKEEVEDVYAGCANQAGEDNRNVARMALLLAGF--PVEVAGCTVNRLCGSGLEAVAQAA 98 (273)
T ss_dssp TSCHHHHHHHHHHHHHHHHTCCGGGCCEEEEECSCCSSTTTTTHHHHHHHHTTC--CTTCEEEEEECGGGHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEEeccccccccccHHHHHHHHcCC--CCccceEEEecccchHHHHHHHHH
Confidence 67899999999999999999999999999999886643 234466666666677 678999999999999999999999
Q ss_pred HHHHhCCCCCCEEEEEEeeccc
Q 012253 133 NWVESASWDGRYGLVVCTDSAV 154 (467)
Q Consensus 133 ~~l~a~~~~~~~aLVV~sD~~~ 154 (467)
..|++|.. +.+|+++.|.+.
T Consensus 99 ~~I~~G~~--d~~lagG~EsmS 118 (273)
T d1ulqa1 99 RAIWAGEG--KVYIGSGVESMS 118 (273)
T ss_dssp HHHHTTSC--SEEEEEEEEESS
T ss_pred HHHhcCCC--ccceeeeccccc
Confidence 99999966 999999999983
|
| >d1m3ka1 c.95.1.1 (A:1-268) Biosynthetic thiolase {Zoogloea ramigera [TaxId: 350]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Biosynthetic thiolase species: Zoogloea ramigera [TaxId: 350]
Probab=98.75 E-value=2.4e-08 Score=94.35 Aligned_cols=98 Identities=8% Similarity=0.026 Sum_probs=87.6
Q ss_pred CCCCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHhcccCCCCeeEEeeCCcChHHHHHHHHHH
Q 012253 53 EVEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAALFNCV 132 (467)
Q Consensus 53 ~~Ed~~~ma~~Aa~~aL~~agi~~~~Id~Li~~Tes~~~~~ps~a~~v~~~Lgl~G~~~~~~~di~~aC~gg~~AL~~A~ 132 (467)
.+..+.+|+..+++.+|++++++|++||.|++|...+....+.++-.+.-..|+ +..+.++.+.++|.+|+.|+..|.
T Consensus 23 ~~~~~~dL~~~~~~~~l~~~~i~~~~Id~vi~G~~~~~~~~~n~ar~~al~agl--p~~vpa~tv~~~C~Sg~~Ai~~Aa 100 (268)
T d1m3ka1 23 ANTPAHELGATVISAVLERAGVAAGEVNEVILGQVLPAGEGQNPARQAAMKAGV--PQEATAWGMNQLAGSGLRAVALGM 100 (268)
T ss_dssp TTCCHHHHHHHHHHHHHHHHTCCGGGCCEEEEECSCCTTSCSCHHHHHHHHTTC--CTTSEEEEEECGGGHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCCHHHCcEEEEeeccccCcchHHHhHHHHHhCC--cccccceeecccCcccchHHHHHH
Confidence 367899999999999999999999999999999877655566778778878787 678999999999999999999999
Q ss_pred HHHHhCCCCCCEEEEEEeeccc
Q 012253 133 NWVESASWDGRYGLVVCTDSAV 154 (467)
Q Consensus 133 ~~l~a~~~~~~~aLVV~sD~~~ 154 (467)
..|.+|.. ..+|+++.|.+.
T Consensus 101 ~~I~~G~~--dvvlagG~EsmS 120 (268)
T d1m3ka1 101 QQIATGDA--SIIVAGGMESMS 120 (268)
T ss_dssp HHHHTTSC--SCEEEEEEEEST
T ss_pred HHHhCCCc--eEEeeccccccc
Confidence 99999976 899999999874
|
| >d1j3na1 c.95.1.1 (A:1-249) Beta-ketoacyl-ACP synthase II {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Beta-ketoacyl-ACP synthase II species: Thermus thermophilus [TaxId: 274]
Probab=98.69 E-value=1.1e-07 Score=88.66 Aligned_cols=139 Identities=18% Similarity=0.192 Sum_probs=93.9
Q ss_pred eeEEeEEEEecCCceeehhHHhhhh--CCC---c-Cee-----EEeccceEeeccC---------CCCCHHHHHHHHHHH
Q 012253 8 NVGILALDIYFPPTCVLQEALEVHD--GVS---K-GKY-----TVGLGQDCMAFCS---------EVEDVISMSLTVVTS 67 (467)
Q Consensus 8 ~vgI~ai~~y~P~~~v~~~el~~~~--g~~---~-~k~-----~~Gig~r~~av~~---------~~Ed~~~ma~~Aa~~ 67 (467)
.|-|.+||+..|-- .+.+++.+.. |.+ + .++ ...++......+. .-....-|++.|+++
T Consensus 3 rVaItG~G~vsp~g-~~~~e~w~~l~~G~s~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~aa~~ 81 (249)
T d1j3na1 3 RVVVTGLGALTPIG-VGQEAFHKAQLAGKSGVRPITRFDASALPVRIAAEVDVDPGAYLDRKELRRLDRFVQYALIAAQL 81 (249)
T ss_dssp CEEEEEEEEEETTE-ESHHHHHHHHHHTCCCEEECCSSCCTTSSCCEEECCCCCGGGTSCHHHHTTSCHHHHHHHHHHHH
T ss_pred cEEEECCEeECCCc-CCHHHHHHHHHcCCCccccCCccccccCCccccccccccccccccHHHHhhCCHHHHHHHHHHHH
Confidence 49999999999976 4777765541 322 1 111 0000000000000 011346779999999
Q ss_pred HHHHcCCCcCCcC----EEEEEeccCCCC--------------------------CCcHHHHHHHHhcccCCCCeeEEee
Q 012253 68 LLEKYKIDPTQIG----RLEVGSETVIDK--------------------------SKSIKTFLMQIFEKYGNTDIEGVDS 117 (467)
Q Consensus 68 aL~~agi~~~~Id----~Li~~Tes~~~~--------------------------~ps~a~~v~~~Lgl~G~~~~~~~di 117 (467)
||+++|+++++++ .|++||..+... ...++.+|+..||+.|+ ++.+
T Consensus 82 Al~dAGl~~~~~~~~~~gv~~Gs~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~is~~~gl~Gp----~~tv 157 (249)
T d1j3na1 82 ALEDAGLKPEDLDPERVGTLVGTGIGGMETWEAQSRVFLERGPNRISPFFIPMMIANMASAHIAMRYGFTGP----SSTV 157 (249)
T ss_dssp HHHHHTCCGGGSCGGGEEEEEECSSCCHHHHHHHHHHHHHHCGGGSCTTHHHHHSTTHHHHHHHHHHTCCSC----BCCB
T ss_pred HHHHcCCChhHcCCccEEEEEEECCCcccccccccccccccCccccChhhhccccchhhhhhhHhhcCCCCC----cccc
Confidence 9999999877654 677777544210 12456789999998442 5677
Q ss_pred CCcChHHHHHHHHHHHHHHhCCCCCCEEEEEEeecc
Q 012253 118 TNACYGGTAALFNCVNWVESASWDGRYGLVVCTDSA 153 (467)
Q Consensus 118 ~~aC~gg~~AL~~A~~~l~a~~~~~~~aLVV~sD~~ 153 (467)
..||++++.||.+|..+|++|.. +.+||.++|..
T Consensus 158 ~~aCaSsl~Ai~~A~~~i~~G~~--d~alvgg~d~~ 191 (249)
T d1j3na1 158 VTACATGADALGSALRMIQLGEA--DLVLAGGTEAA 191 (249)
T ss_dssp CCGGGHHHHHHHHHHHHHHTTSC--SEEEEEEEECC
T ss_pred ccccchHHHHHHHHHHHHHcCCC--CeeeecchHhh
Confidence 89999999999999999999977 89999999974
|
| >d1wdkc1 c.95.1.1 (C:2-263) Fatty oxidation complex beta subunit (3-ketoacyl-CoA thiolase) {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Fatty oxidation complex beta subunit (3-ketoacyl-CoA thiolase) species: Pseudomonas fragi [TaxId: 296]
Probab=98.53 E-value=2e-07 Score=87.62 Aligned_cols=96 Identities=14% Similarity=0.157 Sum_probs=82.8
Q ss_pred CCCHHHHHHHHHHHHHHH-cCCCcCCcCEEEEEeccCC-CCCCcHHHHHHHHhcccCCCCeeEEeeCCcChHHHHHHHHH
Q 012253 54 VEDVISMSLTVVTSLLEK-YKIDPTQIGRLEVGSETVI-DKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAALFNC 131 (467)
Q Consensus 54 ~Ed~~~ma~~Aa~~aL~~-agi~~~~Id~Li~~Tes~~-~~~ps~a~~v~~~Lgl~G~~~~~~~di~~aC~gg~~AL~~A 131 (467)
+..+.+|+..+++.+|++ +|++|++||.||+|...+. .....++-.+.-.-|+ +..+.++.|+++|.+++.|+.+|
T Consensus 27 ~~~~~dL~~~~i~~~l~r~agi~~~~Id~vi~G~v~~~~~~g~n~aR~~al~ag~--p~~vp~~tV~~~C~Sgl~Ai~~a 104 (262)
T d1wdkc1 27 NTRAEDMSAHLISKVLERNSKVDPGEVEDVIWGCVNQTLEQGWNIARMASLMTQI--PHTSAAQTVSRLCGSSMSALHTA 104 (262)
T ss_dssp TCCHHHHHHHHHHHHHHHCTTSCGGGEEEEEEECSSBSBTTTTTHHHHHHTTSSS--CTTSEEEEEECGGGHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhcCCCCHHHeeEEEEEeecccccccccchhhhHhhhhc--ccccchhhccccccHHHHHHHHH
Confidence 556899999999999997 7999999999999988664 2345566665555566 67899999999999999999999
Q ss_pred HHHHHhCCCCCCEEEEEEeecc
Q 012253 132 VNWVESASWDGRYGLVVCTDSA 153 (467)
Q Consensus 132 ~~~l~a~~~~~~~aLVV~sD~~ 153 (467)
...|++|.. +.+|+++.|.+
T Consensus 105 a~~I~sG~~--dvvlAgGvEsm 124 (262)
T d1wdkc1 105 AQAIMTGNG--DVFVVGGVEHM 124 (262)
T ss_dssp HHHHHTTSC--SEEEEEEEEET
T ss_pred HHHHHhhcC--Cceeeeccccc
Confidence 999999966 99999999987
|
| >d1afwa1 c.95.1.1 (A:25-293) Thiolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Thiolase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.40 E-value=4.2e-07 Score=85.64 Aligned_cols=97 Identities=11% Similarity=0.126 Sum_probs=81.2
Q ss_pred CCCCHHHHHHHHHHHHHHHc----CCCcCCcCEEEEEeccCCCCCCcHHHHHHHHhcccCCCCeeEEeeCCcChHHHHHH
Q 012253 53 EVEDVISMSLTVVTSLLEKY----KIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAAL 128 (467)
Q Consensus 53 ~~Ed~~~ma~~Aa~~aL~~a----gi~~~~Id~Li~~Tes~~~~~ps~a~~v~~~Lgl~G~~~~~~~di~~aC~gg~~AL 128 (467)
.+..+.+|+..+++.+|+++ +++|++||.|++|+..+......++-.+.-.-|+ +..+.++.|+.+|.+++.|+
T Consensus 31 ~~~~~~~L~~~~i~~~l~r~~~~~~idp~~Id~vi~G~v~~~g~~~~~aR~~al~agl--p~~vpa~tVnr~CaSg~~Ai 108 (269)
T d1afwa1 31 KDVNTDYLLYNFLNEFIGRFPEPLRADLNLIEEVACGNVLNVGAGATEHRAACLASGI--PYSTPFVALNRQCSSGLTAV 108 (269)
T ss_dssp TTCCHHHHHHHHHHHHHHTSCHHHHTCGGGCCCEEEECSSSBGGGHHHHHHHHHHTTC--CTTSCEEEEECGGGHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHhCCccccCChhhcCEEEeccccccccccccchhhhhhccc--cccccchhccccchHHHHHH
Confidence 35679999999999999875 6999999999999876543333444455555566 67899999999999999999
Q ss_pred HHHHHHHHhCCCCCCEEEEEEeecc
Q 012253 129 FNCVNWVESASWDGRYGLVVCTDSA 153 (467)
Q Consensus 129 ~~A~~~l~a~~~~~~~aLVV~sD~~ 153 (467)
..|...|++|.. ..+|+++.|.+
T Consensus 109 ~~Aa~~I~~G~~--divlagG~Esm 131 (269)
T d1afwa1 109 NDIANKIKVGQI--DIGLALGVESM 131 (269)
T ss_dssp HHHHHHHHTTSC--SEEEEEEEEEH
T ss_pred HHHHHHHhhccc--cceeeeecccc
Confidence 999999999966 99999999987
|
| >d2gfva1 c.95.1.1 (A:2-251) Beta-ketoacyl-ACP synthase II {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Beta-ketoacyl-ACP synthase II species: Escherichia coli [TaxId: 562]
Probab=98.38 E-value=1.2e-06 Score=81.40 Aligned_cols=140 Identities=11% Similarity=0.059 Sum_probs=92.7
Q ss_pred ceeEEeEEEEecCCceeehhHHhhhh--CCCc----CeeE-EeccceEee-ccCC-------------CCCHHHHHHHHH
Q 012253 7 KNVGILALDIYFPPTCVLQEALEVHD--GVSK----GKYT-VGLGQDCMA-FCSE-------------VEDVISMSLTVV 65 (467)
Q Consensus 7 ~~vgI~ai~~y~P~~~v~~~el~~~~--g~~~----~k~~-~Gig~r~~a-v~~~-------------~Ed~~~ma~~Aa 65 (467)
..|-|.+||+..|-- .+.+++.+.. |.+- ..+. .++....-. +... -.....|++.|+
T Consensus 2 rrVaItG~G~vtp~G-~~~~~~w~~L~~G~s~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~l~aa 80 (250)
T d2gfva1 2 RRVVVTGLGMLSPVG-NTVESTWKALLAGQSGISLIDHFDTSAYATKFAGLVKDFNCEDIISRKEQRKMDAFIQYGIVAG 80 (250)
T ss_dssp CCEEEEEEEEEBTTB-SSHHHHHHHHHTTCCCEEECCSSCCTTCSCCEEECCTTCCCTTTSCHHHHTTSCHHHHHHHHHH
T ss_pred CeEEEECCeeECCCc-CCHHHHHHHHHcCCCeeecCCcccccccCCccceecccchhhhhhhhHHHhhcCHHHHHHHHHH
Confidence 358999999999986 4677766552 2211 0110 011000000 1000 012467899999
Q ss_pred HHHHHHcCCCcCCcC----EEEEEeccCCC-----------------C--------CC-cHHHHHHHHhcccCCCCeeEE
Q 012253 66 TSLLEKYKIDPTQIG----RLEVGSETVID-----------------K--------SK-SIKTFLMQIFEKYGNTDIEGV 115 (467)
Q Consensus 66 ~~aL~~agi~~~~Id----~Li~~Tes~~~-----------------~--------~p-s~a~~v~~~Lgl~G~~~~~~~ 115 (467)
+++|+++|+++++++ .+++||..... . .+ .++.+|...||+.| .++
T Consensus 81 ~~Al~dAg~~~~~~~~~~~gv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~~gl~G----p~~ 156 (250)
T d2gfva1 81 VQAMQDSGLEITEENATRIGAAIGSGIGGLGLIEENHTSLMNGGPRKISPFFVPSTIVNMVAGHLTIMYGLRG----PSI 156 (250)
T ss_dssp HHHHHHHTCCCCTTTGGGEEEEEECSSCCHHHHHHHHHHHHHHCGGGSCTTHHHHHSTTHHHHHHHHHTTCCS----CEE
T ss_pred HHHHHhcCCCccccCccceEEEEeeccCCcchhhhhHHHHhhccccccccchhhhhhhhHHHHHHHHHhCCCC----Ccc
Confidence 999999998876544 35667654221 0 11 24778999999832 366
Q ss_pred eeCCcChHHHHHHHHHHHHHHhCCCCCCEEEEEEeecc
Q 012253 116 DSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDSA 153 (467)
Q Consensus 116 di~~aC~gg~~AL~~A~~~l~a~~~~~~~aLVV~sD~~ 153 (467)
.+..||++++.||..|..+|++|.. +.+||.++|..
T Consensus 157 tv~~aCaSg~~Ai~~A~~~i~~G~~--d~~lvgg~d~~ 192 (250)
T d2gfva1 157 SIATAQTSGVHNIGHAARIIAYGDA--DVMVAGGAEKA 192 (250)
T ss_dssp CCCCGGGHHHHHHHHHHHHHHHTSC--SEEEEEEEECC
T ss_pred ccccccchhhhhhHHHHHHHHcCCc--chhhcccchhh
Confidence 7889999999999999999999976 99999999964
|
| >d1e5ma1 c.95.1.1 (A:6-255) Beta-ketoacyl-ACP synthase II {Synechocystis sp. [TaxId: 1143]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Beta-ketoacyl-ACP synthase II species: Synechocystis sp. [TaxId: 1143]
Probab=98.10 E-value=6.6e-06 Score=75.84 Aligned_cols=140 Identities=11% Similarity=0.075 Sum_probs=93.4
Q ss_pred ceeEEeEEEEecCCceeehhHHhhhh--CCC---c-CeeE-EeccceEeeccCC--------------CCCHHHHHHHHH
Q 012253 7 KNVGILALDIYFPPTCVLQEALEVHD--GVS---K-GKYT-VGLGQDCMAFCSE--------------VEDVISMSLTVV 65 (467)
Q Consensus 7 ~~vgI~ai~~y~P~~~v~~~el~~~~--g~~---~-~k~~-~Gig~r~~av~~~--------------~Ed~~~ma~~Aa 65 (467)
..|-|.+||+..|-- .+.+++.+.. |.+ + .++. .+.........+. ......|+..|+
T Consensus 2 ~rVaItG~G~v~p~G-~~~~~~w~~L~~G~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~d~~~~~~~~a~ 80 (250)
T d1e5ma1 2 KRVVVTGLGAITPIG-NTLQDYWQGLMEGRNGIGPITRFDASDQACRFGGEVKDFDATQFLDRKEAKRMDRFCHFAVCAS 80 (250)
T ss_dssp CCEEEEEEEEEBTTB-SSHHHHHHHHHTTCCCEEECCSSCCTTSSCCEEECCCSCCGGGTSCHHHHHTSCHHHHHHHHHH
T ss_pred CeEEEECCeeECCCC-CCHHHHHHHHHcCCCeeccCCccccccccccccceeeecccccccchhhhhhcCcHHHHHHHHH
Confidence 468999999999987 5778776652 321 1 1110 0000000000000 122467899999
Q ss_pred HHHHHHcCCCcCCcC----EEEEEeccCC-----------------CCC---------CcHHHHHHHHhcccCCCCeeEE
Q 012253 66 TSLLEKYKIDPTQIG----RLEVGSETVI-----------------DKS---------KSIKTFLMQIFEKYGNTDIEGV 115 (467)
Q Consensus 66 ~~aL~~agi~~~~Id----~Li~~Tes~~-----------------~~~---------ps~a~~v~~~Lgl~G~~~~~~~ 115 (467)
..+|+++|++++.+. .+++|+..+. ... -..+..|+..||+.| .++
T Consensus 81 ~~Al~~Agl~~~~~~~~~~~v~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~is~~~gl~G----p~~ 156 (250)
T d1e5ma1 81 QQAINDAKLVINELNADEIGVLIGTGIGGLKVLEDQQTILLDKGPSRCSPFMIPMMIANMASGLTAINLGAKG----PNN 156 (250)
T ss_dssp HHHHHHHTCCCCTTTGGGEEEEEECSSCSHHHHHHHHHHHHHHCGGGSCTTHHHHHSTTHHHHHHHHHHTCCS----CEE
T ss_pred HHHHHHcCCChHhhcCCcceEEEEEeeccccchhhhhHHHhhcCccccCcccchhhhcchhhhhHHHhccCCC----CCc
Confidence 999999999876543 4667764321 001 124778888999843 366
Q ss_pred eeCCcChHHHHHHHHHHHHHHhCCCCCCEEEEEEeecc
Q 012253 116 DSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDSA 153 (467)
Q Consensus 116 di~~aC~gg~~AL~~A~~~l~a~~~~~~~aLVV~sD~~ 153 (467)
.+..||++++.||.+|.++|++|.. +.+||.++|..
T Consensus 157 tv~~ACsS~l~Ai~~A~~~i~~G~~--d~~lvGg~~~~ 192 (250)
T d1e5ma1 157 CTVTACAAGSNAIGDAFRLVQNGYA--KAMICGGTEAA 192 (250)
T ss_dssp CCCCGGGHHHHHHHHHHHHHHTTSC--SEEEEEEEECC
T ss_pred cccccchhhhhhhHHHhhcccCCcc--cccccccchhh
Confidence 7789999999999999999999976 89999999964
|
| >d1tqya1 c.95.1.1 (A:3-218) Actinorhodin polyketide putative beta-ketoacyl synthase 1, KasA {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Actinorhodin polyketide putative beta-ketoacyl synthase 1, KasA species: Streptomyces coelicolor [TaxId: 1902]
Probab=97.81 E-value=2.9e-05 Score=69.75 Aligned_cols=139 Identities=13% Similarity=0.151 Sum_probs=92.3
Q ss_pred eeEEeEEEEecCCceeehhHHhhhh--CCC---------cCeeEEeccce------Eeecc----CCCCCHHHHHHHHHH
Q 012253 8 NVGILALDIYFPPTCVLQEALEVHD--GVS---------KGKYTVGLGQD------CMAFC----SEVEDVISMSLTVVT 66 (467)
Q Consensus 8 ~vgI~ai~~y~P~~~v~~~el~~~~--g~~---------~~k~~~Gig~r------~~av~----~~~Ed~~~ma~~Aa~ 66 (467)
.|-|.+||+.+|-- .+.+++.+.. |.+ ++.+..+++.. ...+. ..-.....|++.|++
T Consensus 2 RVvItG~G~v~p~G-~~~~~~w~~L~~G~s~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~aa~ 80 (216)
T d1tqya1 2 RVVITGVGVRAPGG-NGTRQFWELLTSGRTATRRISFFDPSPYRSQVAAEADFDPVAEGFGPRELDRMDRASQFAVACAR 80 (216)
T ss_dssp CEEEEEEEEEETTE-ESHHHHHHHHHHTCCCEEECCSSCCTTSSCCEEECCCCCHHHHTCCHHHHHHSCHHHHHHHHHHH
T ss_pred eEEEEeceeECCCC-CCHHHHHHHHHcCCCEeecCCccCCCcccccccccccccccccccChhhhcccCcchhhHHHHHH
Confidence 58899999999986 4677765552 321 12221111100 00000 001236789999999
Q ss_pred HHHHHcCCCcCCcC----EEEEEeccCC---------------------------CC----CC-cHHHHHHHHhcccCCC
Q 012253 67 SLLEKYKIDPTQIG----RLEVGSETVI---------------------------DK----SK-SIKTFLMQIFEKYGNT 110 (467)
Q Consensus 67 ~aL~~agi~~~~Id----~Li~~Tes~~---------------------------~~----~p-s~a~~v~~~Lgl~G~~ 110 (467)
+||+++|+++++++ .+++++..+. +. .| .++..+...+|+.|
T Consensus 81 ~Al~dAg~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~~g~~G-- 158 (216)
T d1tqya1 81 EAFAASGLDPDTLDPARVGVSLGSAVAAATSLEREYLLLSDSGRDWEVDAAWLSRHMFDYLVPSVMPAEVAWAVGAEG-- 158 (216)
T ss_dssp HHHHHHTCCTTTCCGGGEEEEEECSSTTHHHHHHHHHHHHTTTTCSSCCGGGCCTTTHHHHSTTHHHHHHHHHHTCCS--
T ss_pred HHHHHhcCCccccccccccccccccccccchhhHHHhhhhhcccccccchhhcccccccccCchHHHHHHHHhcCccc--
Confidence 99999999976654 2444443321 00 01 24678889999833
Q ss_pred CeeEEeeCCcChHHHHHHHHHHHHHHhCCCCCCEEEEEEeecc
Q 012253 111 DIEGVDSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDSA 153 (467)
Q Consensus 111 ~~~~~di~~aC~gg~~AL~~A~~~l~a~~~~~~~aLVV~sD~~ 153 (467)
..+-+..||++++.||..|..+|++|.. ..+||.++|..
T Consensus 159 --p~~tv~~ACaS~~~Ai~~A~~~i~~G~~--d~~ivGG~d~~ 197 (216)
T d1tqya1 159 --PVTMVSTGCTSGLDSVGNAVRAIEEGSA--DVMFAGAADTP 197 (216)
T ss_dssp --CEEEECCGGGHHHHHHHHHHHHHHHTSC--SEEEEEEEECC
T ss_pred --cceeeccccchHHHHHHHHHHHHHcCCC--CEEEEeeeccc
Confidence 3567789999999999999999999977 89999999964
|
| >d1tqyb1 c.95.1.1 (B:2-209) Actinorhodin polyketide putative beta-ketoacyl synthase 2, KasB {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Actinorhodin polyketide putative beta-ketoacyl synthase 2, KasB species: Streptomyces coelicolor [TaxId: 1902]
Probab=97.58 E-value=0.00014 Score=64.75 Aligned_cols=138 Identities=15% Similarity=0.019 Sum_probs=91.4
Q ss_pred eeEEeEEEEecCCceeehhHHhhhh--CCC---------cCeeE---EeccceE--eeccCCC-----CCHHHHHHHHHH
Q 012253 8 NVGILALDIYFPPTCVLQEALEVHD--GVS---------KGKYT---VGLGQDC--MAFCSEV-----EDVISMSLTVVT 66 (467)
Q Consensus 8 ~vgI~ai~~y~P~~~v~~~el~~~~--g~~---------~~k~~---~Gig~r~--~av~~~~-----Ed~~~ma~~Aa~ 66 (467)
.|-|.+||+..|--. +.+++.+.. |.+ ...+. .|..... ....++. .....|++.|+.
T Consensus 1 ~VvITG~G~vsp~g~-~~~~~w~~L~~G~sgi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 79 (208)
T d1tqyb1 1 SVLITGVGVVAPNGL-GLAPYWSAVLDGRHGLGPVTRFDVSRYPATLAGQIDDFHAPDHIPGRLLPQTDPSTRLALTAAD 79 (208)
T ss_dssp CEEEEEEEEEETTEE-SHHHHHHHHHTTCCCEEECTTTTGGGSSCCEEECCCSCCHHHHSCTTTGGGCCHHHHHHHHHHH
T ss_pred CEEEEcceeECCCcC-CHHHHHHHHHcCCCceecCcccCchhcccccccccccccccccCChhHhhcccccccccccccc
Confidence 378999999999865 777765442 211 11121 0100000 0000111 124679999999
Q ss_pred HHHHHcCCCcCCcC----EEEEEeccCCC-------------------------CCC-cHHHHHHHHhcccCCCCeeEEe
Q 012253 67 SLLEKYKIDPTQIG----RLEVGSETVID-------------------------KSK-SIKTFLMQIFEKYGNTDIEGVD 116 (467)
Q Consensus 67 ~aL~~agi~~~~Id----~Li~~Tes~~~-------------------------~~p-s~a~~v~~~Lgl~G~~~~~~~d 116 (467)
++|+++|+++++++ .+++++..+.. ..+ ..+..|...||+.| .++-
T Consensus 80 ~Al~~Ag~~~~~~~~~~~g~~~g~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~ia~~~gl~G----p~~t 155 (208)
T d1tqyb1 80 WALQDAKADPESLTDYDMGVVTANACGGFDFTHREFRKLWSEGPKSVSVYESFAWFYAVNTGQISIRHGMRG----PSSA 155 (208)
T ss_dssp HHHHHTTCCGGGSCGGGEEEEEECSSCSHHHHHHHHHHHHHTCGGGSCTTHHHHSSTTHHHHHHHHHHTCCS----SCEE
T ss_pred ccchhhhcccccccccccccccccccccccccchhhhhhccccccccccccccccccccccchhhhcccccc----eeee
Confidence 99999999988764 46677754310 011 24678999999844 2455
Q ss_pred eCCcChHHHHHHHHHHHHHHhCCCCCCEEEEEEeecc
Q 012253 117 STNACYGGTAALFNCVNWVESASWDGRYGLVVCTDSA 153 (467)
Q Consensus 117 i~~aC~gg~~AL~~A~~~l~a~~~~~~~aLVV~sD~~ 153 (467)
+..||++++.||..|.++|++| . +.+||.++|..
T Consensus 156 v~tACaS~l~Ai~~A~~~I~~G-~--d~~lvGG~d~~ 189 (208)
T d1tqyb1 156 LVAEQAGGLDALGHARRTIRRG-T--PLVVSGGVDSA 189 (208)
T ss_dssp EECGGGHHHHHHHHHHHHHHHT-C--SEEEEEEEECC
T ss_pred ccccccHHHHHHHHHHHHHHcC-C--CEEEECccccc
Confidence 7899999999999999999999 6 78999999964
|
| >d2ix4a1 c.95.1.1 (A:31-300) Beta-ketoacyl-ACP synthase II {Thale cress (Arabidopsis thaliana), mitochondrial isoform [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Beta-ketoacyl-ACP synthase II species: Thale cress (Arabidopsis thaliana), mitochondrial isoform [TaxId: 3702]
Probab=97.55 E-value=0.00012 Score=67.38 Aligned_cols=75 Identities=11% Similarity=0.091 Sum_probs=58.5
Q ss_pred HHHHHHHHhcccCCCCeeEEeeCCcChHHHHHHHHHHHHHHhCCCCCCEEEEEEeecccc-------------cC-C---
Q 012253 96 IKTFLMQIFEKYGNTDIEGVDSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDSAVY-------------AE-G--- 158 (467)
Q Consensus 96 ~a~~v~~~Lgl~G~~~~~~~di~~aC~gg~~AL~~A~~~l~a~~~~~~~aLVV~sD~~~y-------------~~-~--- 158 (467)
++.+|...||+.| .++.+..||++++.||..|..+|++|.. +.+||.++|.... .. .
T Consensus 158 ~a~~is~~~~l~G----p~~~v~~aCaSsl~Ai~~A~~~l~~G~~--d~aivgg~~~~~~p~~~~~~~~~~~ls~~~~~~ 231 (270)
T d2ix4a1 158 ASGHVSMKYGFQG----PNHAAVTACATGAHSIGDATRMIQFGDA--DVMVAGGTESSIDALSVAGFSRSRALSTKFNSS 231 (270)
T ss_dssp HHHHHHHHHTCCS----CEECBCCGGGHHHHHHHHHHHHHHHTSC--SEEEEEEEECCCSHHHHHHHHHTTCBCCTTTTC
T ss_pred hHHHHHHHhCCCC----CCcccccccchhhHHHHHHHHHHHcCCC--CeeccccchhhhhhhhHHHHHhcccccCCCCCC
Confidence 5779999999843 3667889999999999999999999977 8999999987510 00 0
Q ss_pred ------C-----CCCccccceeEEEecCC
Q 012253 159 ------P-----ARPTGGAAAVAMLIGPD 176 (467)
Q Consensus 159 ------~-----~~~t~GdGAvA~Ll~~~ 176 (467)
| +-...|+||+++||++.
T Consensus 232 p~~~~rPFD~~a~G~v~gEGaa~~vLe~l 260 (270)
T d2ix4a1 232 PQEASRPFDCDRDGFVIGEGSGVIVLEEY 260 (270)
T ss_dssp GGGSCCTTBTTCCSBCBBCEEEEEEEEEH
T ss_pred CCCccCCCCCCCCCEeeEeeEEEEEEeeH
Confidence 0 11346999999999864
|
| >d2vbaa1 c.95.1.1 (A:1-253) Beta-ketoacyl-ACP synthase I {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Beta-ketoacyl-ACP synthase I species: Escherichia coli [TaxId: 562]
Probab=96.92 E-value=0.0012 Score=60.12 Aligned_cols=138 Identities=14% Similarity=0.126 Sum_probs=86.5
Q ss_pred eeEEeEEEEecCCceeehhHHhhhh--CCCc----Cee-EEeccceEee----ccCC---------CCCHHHHHHHHHHH
Q 012253 8 NVGILALDIYFPPTCVLQEALEVHD--GVSK----GKY-TVGLGQDCMA----FCSE---------VEDVISMSLTVVTS 67 (467)
Q Consensus 8 ~vgI~ai~~y~P~~~v~~~el~~~~--g~~~----~k~-~~Gig~r~~a----v~~~---------~Ed~~~ma~~Aa~~ 67 (467)
.|-|.+||+..|--. +.+++.+.. |.+- .++ ..+....... .... .....-++..++..
T Consensus 3 RVvITG~G~i~p~G~-~~~~~w~~L~~G~sgi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (253)
T d2vbaa1 3 RAVITGLGIVSSIGN-NQQEVLASLREGRSGITFSQELKDSGMRSHVWGNVKLDTTGLIDRKVVRFMSDASIYAFLSMEQ 81 (253)
T ss_dssp CEEEEEEEEEBTTBS-SHHHHHHHHHHTCCCEEECHHHHHTTCSCCEEECCCCCCTTSSCHHHHTTCCHHHHHHHHHHHH
T ss_pred cEEEEccEEECCCCC-CHHHHHHHHHcCCCccccCCccccccCcccccccccccccccccchhhccchhhhhhhhHHHHH
Confidence 599999999999764 666655442 3321 011 0011100000 0011 12245588889999
Q ss_pred HHHHcCCCcC------CcCEEEEEeccCC-------------CC--------------CCcHHHHHHHHhcccCCCCeeE
Q 012253 68 LLEKYKIDPT------QIGRLEVGSETVI-------------DK--------------SKSIKTFLMQIFEKYGNTDIEG 114 (467)
Q Consensus 68 aL~~agi~~~------~Id~Li~~Tes~~-------------~~--------------~ps~a~~v~~~Lgl~G~~~~~~ 114 (467)
++..+++..+ .+ .+++++..+. .. .-.++..|...+|+.| .+
T Consensus 82 a~~~~~l~~~~~~~~~r~-g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~is~~~g~~G----p~ 156 (253)
T d2vbaa1 82 AIADAGLSPEAYQNNPRV-GLIAGSGGGSPRFQVFGADAMRGPRGLKAVGPYVVTKAMASGVSACLATPFKIHG----VN 156 (253)
T ss_dssp HHHHHTCCHHHHTTCTTE-EEEEECSSCCHHHHHHHHHHHTSTTTHHHHCTTHHHHHSTTHHHHHHHTTTTCCS----CE
T ss_pred HHHHhhccchhccCCCCE-EEEeccccccccccccccccccccCCccccCchhhhccccccccceeccccCccc----ce
Confidence 9999887532 23 3455554431 00 1234667888888733 35
Q ss_pred EeeCCcChHHHHHHHHHHHHHHhCCCCCCEEEEEEeecc
Q 012253 115 VDSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDSA 153 (467)
Q Consensus 115 ~di~~aC~gg~~AL~~A~~~l~a~~~~~~~aLVV~sD~~ 153 (467)
+-+..||++++.||..|..+|++|.. ..+||.++|..
T Consensus 157 ~~i~taCaSsl~Ai~~A~~~i~~G~~--d~alvgg~~~~ 193 (253)
T d2vbaa1 157 YSISSACATSAHCIGNAVEQIQLGKQ--DIVFAGGGEEL 193 (253)
T ss_dssp EEEECGGGHHHHHHHHHHHHHHTTSC--SEEEEEEEECC
T ss_pred eeeeccchhHHHHHHHHHHhcchhcc--ceeeecchhhh
Confidence 66779999999999999999999976 89999999864
|
| >d1mzja2 c.95.1.2 (A:184-336) Priming beta-ketosynthase from the r1128 polyketide biosynthetic pathway {Streptomyces sp. r1128 [TaxId: 140437]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Chalcone synthase-like domain: Priming beta-ketosynthase from the r1128 polyketide biosynthetic pathway species: Streptomyces sp. r1128 [TaxId: 140437]
Probab=95.10 E-value=0.098 Score=43.51 Aligned_cols=85 Identities=13% Similarity=0.085 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHHHHcCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHhcccCCCCee-EEeeC--CcChHHHHHHHHHHH
Q 012253 57 VISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIE-GVDST--NACYGGTAALFNCVN 133 (467)
Q Consensus 57 ~~~ma~~Aa~~aL~~agi~~~~Id~Li~~Tes~~~~~ps~a~~v~~~Lgl~G~~~~~-~~di~--~aC~gg~~AL~~A~~ 133 (467)
++....++++++|+++|++++|||.+++.. ..+.+-..+.+.||+ +++-. ...+. ..|.+...-+. -..
T Consensus 46 av~~vp~~i~~~L~~~gl~~~dId~~i~Hq-----~~~~~~~~v~~~lgi--~~ek~~~~~~~~~GNt~Sasip~~-L~~ 117 (153)
T d1mzja2 46 AVADVVPAAREALEVAGLTVGDLVAFVPHQ-----ANLRIIDVLVDRLGV--PEHVVVSRDAEDTGNTSSASVALA-LDR 117 (153)
T ss_dssp HHHHHHHHHHHHHHTTTCCGGGCSEEEECC-----SCHHHHHHHHHHHTC--CTTSEECCTHHHHCBCTTHHHHHH-HHH
T ss_pred HHHHHHHHHHHHHHHhCCCcccCCEEEEcC-----CcHHHHHHHHHHhCC--CchhcchhhhhhcCCcccchHHHH-HHH
Confidence 355566788999999999999999999742 356677889999998 43322 11232 23444432222 233
Q ss_pred HHHhCC-CCCCEEEEEE
Q 012253 134 WVESAS-WDGRYGLVVC 149 (467)
Q Consensus 134 ~l~a~~-~~~~~aLVV~ 149 (467)
.++.+. .+|.++|+++
T Consensus 118 ~~~~~~~~~Gd~ill~~ 134 (153)
T d1mzja2 118 LVRSGAVPGGGPALMIG 134 (153)
T ss_dssp HHHHTSSCTTCEEEEEE
T ss_pred HHHcCCCCCCCEEEEEE
Confidence 445542 2677888876
|
| >d1ub7a2 c.95.1.2 (A:174-322) Ketoacyl-ACP synthase III (FabH) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Chalcone synthase-like domain: Ketoacyl-ACP synthase III (FabH) species: Thermus thermophilus [TaxId: 274]
Probab=94.76 E-value=0.022 Score=47.50 Aligned_cols=86 Identities=14% Similarity=0.078 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHHHHcCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHhcccCCCCeeEEeeC--CcChHHHHHHHHHHHH
Q 012253 57 VISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDST--NACYGGTAALFNCVNW 134 (467)
Q Consensus 57 ~~~ma~~Aa~~aL~~agi~~~~Id~Li~~Tes~~~~~ps~a~~v~~~Lgl~G~~~~~~~di~--~aC~gg~~AL~~A~~~ 134 (467)
++....++++++|+++|++++|||.+++. ...+.+-..+.+.|++ +++-....+. ..|.+...-+. -...
T Consensus 45 a~~~vp~~i~~~L~~~g~~~~dId~~i~H-----qa~~~~~~~i~~~lgi--~~~k~~~~~~~~Gn~~sasip~~-L~~~ 116 (149)
T d1ub7a2 45 AVRVMNTATLEAIEKAGLTPEDIRLFVPH-----QANLRIIDAARERLGL--PWERVAVNVDRYGNTSTASIPLA-LKEA 116 (149)
T ss_dssp HHHHHHHHHHHHHHHHTCCGGGCSEEEEC-----CSCHHHHHHHHHTTTC--CGGGBCCCHHHHCBCGGGHHHHH-HHHH
T ss_pred HHHHHHHHHHHHHHhhccccccccEEEee-----ccchHHHHHHHhhccc--hhhHHHHHHHHhcCCcchhHHHH-HHHH
Confidence 34555678899999999999999999874 3456677888999997 3332222232 23333332222 2344
Q ss_pred HHhCC-CCCCEEEEEEe
Q 012253 135 VESAS-WDGRYGLVVCT 150 (467)
Q Consensus 135 l~a~~-~~~~~aLVV~s 150 (467)
++.+. .||.++|+++.
T Consensus 117 ~~~~~~~~Gd~vll~g~ 133 (149)
T d1ub7a2 117 VDAGRIREGDHVLLVSF 133 (149)
T ss_dssp HHHTSSCTTCEEEEEEE
T ss_pred HHcCCCCCCCEEEEEEE
Confidence 45443 27788988764
|
| >d1u6ea2 c.95.1.2 (A:175-317) Ketoacyl-ACP synthase III (FabH) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Chalcone synthase-like domain: Ketoacyl-ACP synthase III (FabH) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.67 E-value=0.049 Score=45.22 Aligned_cols=83 Identities=13% Similarity=0.117 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHHHHcCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHhcccCCCCeeEEe-e---CC-cChHHHHHHHHH
Q 012253 57 VISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVD-S---TN-ACYGGTAALFNC 131 (467)
Q Consensus 57 ~~~ma~~Aa~~aL~~agi~~~~Id~Li~~Tes~~~~~ps~a~~v~~~Lgl~G~~~~~~~d-i---~~-aC~gg~~AL~~A 131 (467)
++....++++++|+++|++++|||.+++. ...+.+-..|++.||+ +++-.... + .| ++++-..+|..+
T Consensus 46 a~~~v~~~i~~~L~~~gl~~~dId~~i~H-----qa~~~i~~~v~~~lgl--~~ek~~~~~~~~~GNt~sasip~~L~~a 118 (148)
T d1u6ea2 46 AAFKMGDVGRRAMDAAGVRPDQIDVFVPH-----QANSRINELLVKNLQL--RPDAVVANDIEHTGNTSAASIPLAMAEL 118 (148)
T ss_dssp HHHHHHHHHHHHHHHHTCCGGGCCEEEEC-----CSCHHHHHHHHHHHTC--CTTCEECCTHHHHCBCGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCcccccEEEec-----cccHHHHHHHHHhcCC--CchhhhhhhHHhhCCCccchHHHHHHHH
Confidence 45666788999999999999999999974 2356667789999998 44322222 2 22 334444555544
Q ss_pred HHHHHhCC-CCCCEEEEEE
Q 012253 132 VNWVESAS-WDGRYGLVVC 149 (467)
Q Consensus 132 ~~~l~a~~-~~~~~aLVV~ 149 (467)
++.+. .+|.++|+++
T Consensus 119 ---~~~g~i~~Gd~vll~g 134 (148)
T d1u6ea2 119 ---LTTGAAKPGDLALLIG 134 (148)
T ss_dssp ---HHHTSSCTTCEEEEEE
T ss_pred ---HHcCCCCCCCEEEEEE
Confidence 34442 2677888876
|
| >d1m3ka2 c.95.1.1 (A:269-392) Biosynthetic thiolase {Zoogloea ramigera [TaxId: 350]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Biosynthetic thiolase species: Zoogloea ramigera [TaxId: 350]
Probab=92.49 E-value=0.27 Score=39.23 Aligned_cols=95 Identities=15% Similarity=0.059 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHcCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHhcccC---CCCeeEEeeC--CcChHHHHHHHHHHHHH
Q 012253 61 SLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYG---NTDIEGVDST--NACYGGTAALFNCVNWV 135 (467)
Q Consensus 61 a~~Aa~~aL~~agi~~~~Id~Li~~Tes~~~~~ps~a~~v~~~Lgl~G---~~~~~~~di~--~aC~gg~~AL~~A~~~l 135 (467)
-+.|++++|+++|++.+|||++.+- . ..-+..-..++.|++-- |.+=-++-+. -||+|.-..+..+..+-
T Consensus 24 Pv~A~~~lL~r~gl~~~Did~~Ein----E-AFA~q~la~~~~l~id~~kvN~~GGaiAlGHP~GaSGarl~~tl~~~L~ 98 (124)
T d1m3ka2 24 PIPASRKALERAGWKIGDLDLVEAN----E-AFAAQACAVNKDLGWDPSIVNVNGGAIAIGHPIGASGARILNTLLFEMK 98 (124)
T ss_dssp HHHHHHHHHHHHTCCGGGCSEEEEC----C-SBHHHHHHHHHHHCCCGGGBSTTCCHHHHCCCTTTHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCChhcccHHHhc----c-cchhheeeehHhhCCChhhcCCCCCccccccCcCccchhHHHHHHHHHH
Confidence 4578999999999999999999972 2 23355667888888610 1111122333 38888877788887766
Q ss_pred HhCCCCCCEEEEEEeecccccCCCCCCccccceeEEEecC
Q 012253 136 ESASWDGRYGLVVCTDSAVYAEGPARPTGGAAAVAMLIGP 175 (467)
Q Consensus 136 ~a~~~~~~~aLVV~sD~~~y~~~~~~~t~GdGAvA~Ll~~ 175 (467)
+.+ +++.|+-.+- .|..++||||++
T Consensus 99 ~~~---~~~Glas~C~------------gGG~g~A~liE~ 123 (124)
T d1m3ka2 99 RRG---ARKGLATLCI------------GGGMGVAMCIES 123 (124)
T ss_dssp HHT---CSEEEEEEEE------------TTTEEEEEEEEC
T ss_pred hcC---CCEEEEEecc------------cccceeEEEEEe
Confidence 654 4777765443 466668888864
|
| >d1hnja2 c.95.1.2 (A:175-317) Ketoacyl-ACP synthase III (FabH) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Chalcone synthase-like domain: Ketoacyl-ACP synthase III (FabH) species: Escherichia coli [TaxId: 562]
Probab=92.11 E-value=0.17 Score=41.50 Aligned_cols=84 Identities=17% Similarity=0.107 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHHHcCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHhcccCCCCeeEEe---eCC-cChHHHHHHHHHH
Q 012253 57 VISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVD---STN-ACYGGTAALFNCV 132 (467)
Q Consensus 57 ~~~ma~~Aa~~aL~~agi~~~~Id~Li~~Tes~~~~~ps~a~~v~~~Lgl~G~~~~~~~d---i~~-aC~gg~~AL~~A~ 132 (467)
++....++++++|+++|++++|||.+++. ..++.+-..+++.||+ +++-.... ..| ++++-..+|..+.
T Consensus 42 av~~~~~~i~~~L~~~g~~~~dId~~i~H-----q~~~~~~~~~~~~l~l--~~~k~~~~~~~~GN~~sasip~~L~~~~ 114 (143)
T d1hnja2 42 AVTELAHIVDETLAANNLDRSQLDWLVPH-----QANLRIISATAKKLGM--SMDNVVVTLDRHGNTSAASVPCALDEAV 114 (143)
T ss_dssp HHHHHHHHHHHHHHHTTCCGGGCCEEEEC-----CSCHHHHHHHHHHTTC--CGGGBCCCHHHHCBCGGGHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHHhhhcccccceEEec-----cCchHHHHHHHHhCcc--chhhhhhhhhhhcccccchHHHHHHHHH
Confidence 34556778999999999999999999873 2355667788999998 33211112 233 4555555555554
Q ss_pred HHHHhCC-CCCCEEEEEEe
Q 012253 133 NWVESAS-WDGRYGLVVCT 150 (467)
Q Consensus 133 ~~l~a~~-~~~~~aLVV~s 150 (467)
. .+. .+|.++|+++.
T Consensus 115 ~---~~~~~~Gd~vll~g~ 130 (143)
T d1hnja2 115 R---DGRIKPGQLVLLEAF 130 (143)
T ss_dssp H---TTCSCTTCEEEEEEE
T ss_pred H---hCCCCCCCEEEEEEE
Confidence 4 432 26788888763
|
| >d1wdkc2 c.95.1.1 (C:264-391) Fatty oxidation complex beta subunit (3-ketoacyl-CoA thiolase) {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Fatty oxidation complex beta subunit (3-ketoacyl-CoA thiolase) species: Pseudomonas fragi [TaxId: 296]
Probab=91.35 E-value=0.32 Score=38.98 Aligned_cols=95 Identities=12% Similarity=0.130 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHcCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHhcccC------CCCeeEEeeCC--cChHHHHHHHHHH
Q 012253 61 SLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYG------NTDIEGVDSTN--ACYGGTAALFNCV 132 (467)
Q Consensus 61 a~~Aa~~aL~~agi~~~~Id~Li~~Tes~~~~~ps~a~~v~~~Lgl~G------~~~~~~~di~~--aC~gg~~AL~~A~ 132 (467)
.+.|++++|++++++.+|||.+..- .- ..+.+..+++.++..+ |.+=-++-+.+ ||.|.-..+.++.
T Consensus 25 p~~A~~klL~ragl~~~did~~Ein----EA-FA~q~l~~~~~~~~~~~~~ekvN~~GGaiAlGHP~GASGaRlv~~l~~ 99 (128)
T d1wdkc2 25 PVPATQKALKRAGLNMADIDFIELN----EA-FAAQALPVLKDLKVLDKMNEKVNLHGGAIALGHPFGCSGARISGTLLN 99 (128)
T ss_dssp HHHHHHHHHHHHTCCGGGCCEEEEC----CS-BHHHHHHHHHHTTCGGGHHHHBSTTCCHHHHCCCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHhhhcCccccccceEEee----cc-cchhhhhhhhhcccccCCcceecCCCCcccccccccccchhHHHHHHH
Confidence 4578999999999999999999972 11 2233444455544211 12212223333 6677766666666
Q ss_pred HHHHhCCCCCCEEEEEEeecccccCCCCCCccccceeEEEecC
Q 012253 133 NWVESASWDGRYGLVVCTDSAVYAEGPARPTGGAAAVAMLIGP 175 (467)
Q Consensus 133 ~~l~a~~~~~~~aLVV~sD~~~y~~~~~~~t~GdGAvA~Ll~~ 175 (467)
.+-+. ++++.|+-.+- .|-.++||||++
T Consensus 100 ~L~~~---~~~~Glas~C~------------gGG~g~A~~iEr 127 (128)
T d1wdkc2 100 VMKQN---GGTFGLSTMCI------------GLGQGIATVFER 127 (128)
T ss_dssp HHHHT---TCSEEEEEEEE------------TTTEEEEEEEEC
T ss_pred HHHhc---CCCEEEEEecc------------cccceeEEEEEe
Confidence 66554 34777765432 577778888874
|
| >d1tqyb2 c.95.1.1 (B:210-403) Actinorhodin polyketide putative beta-ketoacyl synthase 2, KasB {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Actinorhodin polyketide putative beta-ketoacyl synthase 2, KasB species: Streptomyces coelicolor [TaxId: 1902]
Probab=90.21 E-value=1.7 Score=36.94 Aligned_cols=25 Identities=16% Similarity=-0.064 Sum_probs=21.2
Q ss_pred CCCccccceeccCCchHHHHHHHHH
Q 012253 239 QFSMLDVDYFVFHSPYNKLVQKSFA 263 (467)
Q Consensus 239 ~~~~~d~d~~i~H~p~~k~~~k~~~ 263 (467)
++.++||+++..|...++..+.+-.
T Consensus 76 ~i~~~di~~v~ahgtGt~~~D~~E~ 100 (194)
T d1tqyb2 76 GTGPEDVDVVFADGAGVPELDAAEA 100 (194)
T ss_dssp TCCGGGCCEEECCCCCSHHHHHHHH
T ss_pred cccccceeeeeccccCcccccHHHh
Confidence 6889999999999999988776543
|
| >d1ulqa2 c.95.1.1 (A:276-400) Beta-ketoadipyl CoA thiolase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Beta-ketoadipyl CoA thiolase species: Thermus thermophilus [TaxId: 274]
Probab=89.62 E-value=0.87 Score=36.12 Aligned_cols=95 Identities=9% Similarity=0.109 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHcCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHhcccCC-----CCeeEEeeCC--cChHHHHHHHHHHH
Q 012253 61 SLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGN-----TDIEGVDSTN--ACYGGTAALFNCVN 133 (467)
Q Consensus 61 a~~Aa~~aL~~agi~~~~Id~Li~~Tes~~~~~ps~a~~v~~~Lgl~G~-----~~~~~~di~~--aC~gg~~AL~~A~~ 133 (467)
-+.|++++|+++|++++|||.+..- .- .-+..-.+++.+++.=. .+=-++-+.+ ||+|.-..+.++..
T Consensus 23 P~~A~~~~L~r~gl~~~Did~~Ein----EA-FAaq~l~~~~~~~l~~d~~kvN~~GGaIAlGHP~GASGari~~tl~~~ 97 (125)
T d1ulqa2 23 PVPATRKALERAGLSFSDLGLIELN----EA-FAAQALAVLREWSLSMEDQRLNPNGGAIALGHPLGASGARILTTLVHE 97 (125)
T ss_dssp HHHHHHHHHHHTTCCGGGCSEEEEC----CS-BHHHHHHHHHHHTCCTTCTTBSTTCCHHHHCCCHHHHHHHHHHHHHHH
T ss_pred cHHHHHhHhhccCcCccccchheec----cc-cchhHHHHHHHhhccCchhhcCCCCCcccccCCccccchhHHHHHHHH
Confidence 4678999999999999999999872 21 22344455666544001 1111222233 55665555555555
Q ss_pred HHHhCCCCCCEEEEEEeecccccCCCCCCccccceeEEEecC
Q 012253 134 WVESASWDGRYGLVVCTDSAVYAEGPARPTGGAAAVAMLIGP 175 (467)
Q Consensus 134 ~l~a~~~~~~~aLVV~sD~~~y~~~~~~~t~GdGAvA~Ll~~ 175 (467)
+-+. ++++.++-.+- .|-.+.||||++
T Consensus 98 L~~~---~~~~G~as~C~------------gGG~g~A~~iE~ 124 (125)
T d1ulqa2 98 MRRR---KVQFGLATMCI------------GVGQGIAVVVEG 124 (125)
T ss_dssp HHHT---TCSEEEEEEEE------------TTTEEEEEEEEE
T ss_pred HHhc---CCCEEEEEecc------------cccceeEEEEEe
Confidence 5443 34777665443 566678888764
|
| >d1afwa2 c.95.1.1 (A:294-417) Thiolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Thiolase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.90 E-value=0.9 Score=35.99 Aligned_cols=93 Identities=11% Similarity=0.118 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHHcCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHhcccCCCC-----eeEEeeCC--cChHHHHHHHHH
Q 012253 59 SMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTD-----IEGVDSTN--ACYGGTAALFNC 131 (467)
Q Consensus 59 ~ma~~Aa~~aL~~agi~~~~Id~Li~~Tes~~~~~ps~a~~v~~~Lgl~G~~~-----~~~~di~~--aC~gg~~AL~~A 131 (467)
.=.+.|++++|+++|++.+|||++.+- . ..-+..-..++.|++ ..+ =-++-+.+ ||+|.-..+..+
T Consensus 24 ~gPv~Ai~klL~r~gl~~~Did~~Ein----E-AFA~q~l~~~~~l~i--d~~kvN~~GGaiAlGHP~GaSGarlv~~l~ 96 (124)
T d1afwa2 24 VGPAYAIPKVLEATGLQVQDIDIFEIN----E-AFAAQALYCIHKLGI--DLNKVNPRGGAIALGHPLGCTGARQVATIL 96 (124)
T ss_dssp GHHHHHHHHHHHHHTCCGGGCSEEEEC----C-SBHHHHHHHHHHHTC--CGGGBSTTCCHHHHCBCTTTHHHHHHHHHH
T ss_pred hChHHHHHHHHHHcCCCcccCcEEEec----c-chhHHHHHHHHHcCC--ChhhccccCccceecCCcCCchHHHHHHHH
Confidence 345678999999999999999999873 2 234556678888886 221 11222222 566655555544
Q ss_pred HHHHHhCCCCCCEEEEEEeecccccCCCCCCccccceeEEEecC
Q 012253 132 VNWVESASWDGRYGLVVCTDSAVYAEGPARPTGGAAAVAMLIGP 175 (467)
Q Consensus 132 ~~~l~a~~~~~~~aLVV~sD~~~y~~~~~~~t~GdGAvA~Ll~~ 175 (467)
..+ + .+++.|+-.+- .|.-++|+||++
T Consensus 97 ~~L-~----~~~~glas~C~------------ggG~G~a~~ier 123 (124)
T d1afwa2 97 REL-K----KDQIGVVSMCI------------GTGMGAAAIFIK 123 (124)
T ss_dssp HHS-C----TTCEEEEEEEE------------TTTEEEEEEEEE
T ss_pred HHh-c----cCCEEEEEEcc------------cCCcEEEEEEEe
Confidence 443 2 34666653322 333367777765
|
| >d1teda_ c.95.1.2 (A:) Polyketide synthase PKS18 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Chalcone synthase-like domain: Polyketide synthase PKS18 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=83.64 E-value=0.49 Score=44.63 Aligned_cols=45 Identities=16% Similarity=0.105 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHcCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHhcc
Q 012253 57 VISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEK 106 (467)
Q Consensus 57 ~~~ma~~Aa~~aL~~agi~~~~Id~Li~~Tes~~~~~ps~a~~v~~~Lgl 106 (467)
+.....++++++|+++|++++|||.+++.. ..+.+-..+++.||+
T Consensus 264 ~~~~~~~~i~~~L~~~gl~~~did~~i~Hq-----~~~~i~~~i~~~Lgl 308 (372)
T d1teda_ 264 IFSGVAPVVTEMLWDNGLQISDIDLWAIHP-----GGPKIIEQSVRSLGI 308 (372)
T ss_dssp HHHHHHHHHHHHHHHTTCCGGGCSCEEECC-----SCHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHhcCCCHHHhhhhhccC-----ccHHHHHHHHHHcCC
Confidence 456677889999999999999999998743 245666778999998
|
| >d1tqya2 c.95.1.1 (A:219-423) Actinorhodin polyketide putative beta-ketoacyl synthase 1, KasA {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Actinorhodin polyketide putative beta-ketoacyl synthase 1, KasA species: Streptomyces coelicolor [TaxId: 1902]
Probab=80.43 E-value=12 Score=31.35 Aligned_cols=24 Identities=17% Similarity=0.228 Sum_probs=20.7
Q ss_pred CCCccccceeccCCchHHHHHHHH
Q 012253 239 QFSMLDVDYFVFHSPYNKLVQKSF 262 (467)
Q Consensus 239 ~~~~~d~d~~i~H~p~~k~~~k~~ 262 (467)
++.++||+++-.|...+++.+.+.
T Consensus 79 ~i~~~~i~~ie~hgtGt~~~D~~E 102 (205)
T d1tqya2 79 RTDATDIDYINAHGSGTRQNDRHE 102 (205)
T ss_dssp TCCGGGCCEEECCCCCCHHHHHHH
T ss_pred cCCccceeeeeccccccccCchhH
Confidence 588999999999999998877554
|