Citrus Sinensis ID: 012329

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460------
Protein Sequence
MAYDDDPYRDEDEEPLMDYDDIRSDPEQSPEHQQHQNDNVLDDFDDDDVGDGGVSPARERSQTPVYNNNEKSSKPRKRLVKKGAKESGSTPSLIDEREDEYDDEGEDNIIGDDFEREIEERKRKKWGKEGGKDHNTKKRLKSGGDKKFSSSGGKSSGFKSSRAGSIRDNDKMLNEMWNAVAPTGDSEDDQEGVRTLDDDNFIDDSGVDPSDRYGSDSEPRFAHDAPQAEEGDEDEEIKELFKMGKKRKKNEKSPAEIALLVENVMAELEVTAEEDAELNRQGKPAINKLKKLSLLTEVLSKKQLQQEFLDHGVLTLLKNWLEPLPDGSLPNINIRAAILKILTEFPIDLEQFDRREQLKKSGLGKVIMFLSKSDEETTSNRKLAKDLVDKWSRPIFNKSTRFEDMKTVEDDRVPFRRPSAKKPASKAAAMESRDGDFDDLVISRYDLTIDLIFLRILYCSSMSFYM
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHccccccccccccccccccccccccccccccccHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHcccccccccccHHHHHHccHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHcccccccccHHHHHccccccccccccHHHHHHHHcccccccHHHHHHcccccccccEEEccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHEEEccccccccccccccccccccccccccccccccccccHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccccccccccccccccccccHccccccccccHHcccccccccccccccHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcHHHHHHcccHHHHHHHHHccccccccccHHHHHHHHHHHHHccccccccccHHHHHHccccEEEEEEEccccccHHHHHHHHHHHHHHccHHHcccccHHHHcHHHHHHccccccHHcccccccccccccccccccccccHHHHcHHHHHHHHEEHccccEcc
Coil and Loop (DISEMBL)
maydddpyrdedeeplmdyddirsdpeqspehqqhqndnvlddfddddvgdggvsparersqtpvynnneksskprKRLVKkgakesgstpslideredeyddegedniigdDFEREIEERKRKkwgkeggkdhntkkrlksggdkkfsssggkssgfkssragsirdnDKMLNEMWNavaptgdseddqegvrtldddnfiddsgvdpsdrygsdseprfahdapqaeegdeDEEIKELFKMGKkrkkneksPAEIALLVENVMAELEVTAEEDAELnrqgkpainkLKKLSLLTEVLSKKQLQQEFLDHGVLTLLKNwleplpdgslpniNIRAAILKILTefpidleqFDRREQLKKSGLGKVIMFLSKSDEETTSNRKLAKDLVdkwsrpifnkstrfedmktveddrvpfrrpsakkpaskaaamesrdgdfddlVISRYDLTIDLIFLRILYCSSMSFYM
Flexible Loop (DISEMBL)
maydddpyrdedeeplMDYDDIRSDPEQSPEHQQHQNDNVLDDFDDDDVGDGGvsparersqtpvynnneksskprkrlvkkgakesgstpslideredeyddegedniigddfereieerkrkkwgkeggkdhntkkrlksggdkkfsssggkssgfkssragsirdNDKMLNEMWNAVaptgdseddqegvrtldddnfiddsgvdpsdrygsdseprfahdapqaeegdedeEIKELFkmgkkrkknekspAEIALLVENVMAELEVTAEEdaelnrqgkpainkLKKLSLLTEVLSKKQLQQEFLDHGVLTLLKNWLEPLPDGSLPNINIRAAILKILTEFPIDLEQFDRREQlkksglgkvimflsksdeettsnrklakdlvdkwsrpifnkstrfedmktveddrvpfrrpsakkpaskaaamesrdgdfddLVISRYDLTIDLIFLRILYCSSMSFYM
Low Complexity Region (SEG)
MAydddpyrdedeepLMDYDDIRSDPEQSPEHQQHQNdnvlddfddddvgdggvSPARERSQTPVYNNNEKSSKPRKRLVKKGAKESGSTPSLideredeyddegedniigddfereieerkrkkwgkeggkDHNTKKRLksggdkkfsssggkssgfkssRAGSIRDNDKMLNEMWNAVAPTGDSEDDQEGVRTLDDDNFIDDSGVDPSDRYGSDSEPRFAHDAPQAeegdedeeikeLFKMGKKRKKNEKSPAEIALLVENVMAELEVTAEEDAELNRQGKPAINKLKKLSLLTEVLSKKQLQQEFLDHGVLTLLKNWLEPLPDGSLPNINIRAAILKILTEFPIDLEQFDRREQLKKSGLGKVIMFLSKSDEETTSNRKLAKDLVDKWSRPIFNKSTRFEDMKTVEDDRVPFRRpsakkpaskaaaMESRDGDFDDLVISRYDLTIDLIFLRILYCSSMSFYM
Disordered region (IsUnstruct)
****************************************************************************************************************************************************************************************************************************************************************IALLVENVMAEL******************NKLKKLSLLTEVLSKKQLQQEFLDHGVLTLLKNWLEPLPDGSLPNINIRAAILKILTEFPIDLEQFDRREQLKKSGLGKVIMFL********************W*********************************************FDDLVISRYDLTIDLIFLRILYCSSMS***
Disordered Region (DISOPRED)
*****DP************************************************************************************************************************************************************************************************************************************************************LVENVMAELEVTAE*************NKLKKLSLLTEVLSKKQLQQEFLDHGVLTLLKNWLEPLPDGSLPNINIRAAILKILTEFPIDLEQFDRREQLKKSGLGKVIMFLSKSDEETTSNRKLAKDLVDKWSRPIFNKST******************************************************RILYCSSMSFYM
Disordered Region (DISEMBL)
MAYDDDPYRDEDEEPLMDYDDIRS************NDNVLDDFDDDDVGDGGVSPARERSQTPVY**************************************GEDNIIGDDFEREIEERKR****************************************GSIRDNDKMLNEMWNAVAP**********VRTLDDDNFIDDSGVDPSDRYGSDSEPR***************EIKELFKMG*********PAEIALLVENVMAELEVTAEEDAELNRQGKPAINKLKKLSLLTEVLSKKQLQQEFLDHGVLTLLKNWLEPLPDGSLPNINIRAAILKILTEFPIDLEQFDRREQLKKSGLGKVIMFLSKS********KLAKDLVDKWSRPIFNKSTRFEDMKTVEDDRVPF*****************RDGDFDDLVISRYDLTIDLIFLRILYCSSMSFYM
Disordered Region (DISPRO)
*****DPYRDEDEEPLMDYDDIR********************************************************************************************************************************************************************************************************************EIKELFK********EKSPAEIALLVENVMAELEVTAEEDAELNRQGKPAINKLKKLSLLTEVLSKKQLQQEFLDHGVLTLLKNWLEPLPDGSLPNINIRAAILKILTEFPIDLEQFDRREQLKKSGLGKVIMFLSKSDEETTSNRKLAKDLVDKWSRPIFNKSTRFEDMKTVED******************************VISRYDLTIDLIFLRILYCSS*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAYDDDPYRDEDEEPLMDYDDIRSDPEQSPEHQQHQNDNVLDDFDDDDVGDGGVSPARERSQTPVYNNNEKSSKPRKRLVKKGAKESGSTPSLIDEREDEYDDEGEDNIIGDDFEREIEERKRKKWGKEGGKDHNTKKRLKSGGDKKFSSSGGKSSGFKSSRAGSIRDNDKMLNEMWNAVAPTGDSEDDQEGVRTLDDDNFIDDSGVDPSDRYGSDSEPRFAHDAPQAEEGDEDEEIKELFKMGKKRKKNEKSPAEIALLxxxxxxxxxxxxxxxxxxxxxGKPAINKLKKLSLLTEVLSKKQLQQEFLDHGVLTLLKNWLEPLPDGSLPNINIRAAILKILTEFPIDLEQFDRREQLKKSGLGKVIMFLSKSDEETTSNRKLAKDLVDKWSRPIFNKSTRFEDMKTVEDDRVPFRRPSAKKPASKAAAMESRDGDFDDLVISRYDLTIDLIFLRILYCSSMSFYM
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	466	2.2.26 [Sep-21-2011]
Q8C1D8	766	Protein IWS1 homolog OS=M	yes	no	0.302	0.184	0.410	3e-28
Q3SWT4	764	Protein IWS1 homolog OS=R	yes	no	0.302	0.184	0.410	4e-28
Q96ST2	819	Protein IWS1 homolog OS=H	yes	no	0.302	0.172	0.410	4e-28
Q505H7	909	Protein IWS1 homolog OS=X	yes	no	0.302	0.155	0.404	1e-26
Q6DE96	836	Protein IWS1 homolog A OS	N/A	no	0.302	0.168	0.410	1e-26
Q4P7X6	380	Transcription factor IWS1	N/A	no	0.354	0.434	0.375	4e-23
O42964	428	Transcription factor iws1	yes	no	0.283	0.308	0.391	4e-22
Q4IJ11	428	Transcription factor IWS1	no	no	0.321	0.350	0.356	2e-19
Q61MR2	497	IWS1-like protein OS=Caen	N/A	no	0.293	0.275	0.321	8e-19
Q06505	410	Transcription factor SPN1	yes	no	0.302	0.343	0.344	1e-18

>sp|Q8C1D8|IWS1_MOUSE Protein IWS1 homolog OS=Mus musculus GN=Iws1 PE=1 SV=1

 Score =  126 bits (317), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 60/146 (41%), Positives = 93/146 (63%), Gaps = 5/146 (3%)

Query: 260 LVENVMAELEVTAEEDAELNRQGKPAINKLKKLSLLTEVLSKKQLQQEFLDHGVLTLLKN 319
           +V  ++ ++   AEED +LN Q KPA+ KL  L  +   L K+ L++ F+D GV++ +K 
Sbjct: 506 VVSAMIVKMNEAAEEDRQLNNQKKPALKKLTLLPTVVMHLKKQDLKETFIDSGVMSAIKE 565

Query: 320 WLEPLPDGSLPNINIRAAILKILTEFPIDLEQFDRREQLKKSGLGKVIMFLSKSDEETTS 379
           WL PLPD SLP + IR  +LKIL E P        +E LK SG+G+ +M+L K  +E+ S
Sbjct: 566 WLSPLPDRSLPALKIREELLKILQELP-----SVSQETLKHSGIGRAVMYLYKHPKESRS 620

Query: 380 NRKLAKDLVDKWSRPIFNKSTRFEDM 405
           N+ +A  L+++WSRPIF  ++ ++ M
Sbjct: 621 NKDMAGKLINEWSRPIFGLTSNYKGM 646

Mus musculus (taxid: 10090)

>sp|Q3SWT4|IWS1_RAT Protein IWS1 homolog OS=Rattus norvegicus GN=Iws1 PE=2 SV=1

 Score =  126 bits (316), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 60/146 (41%), Positives = 93/146 (63%), Gaps = 5/146 (3%)

Query: 260 LVENVMAELEVTAEEDAELNRQGKPAINKLKKLSLLTEVLSKKQLQQEFLDHGVLTLLKN 319
           +V  ++ ++   AEED +LN Q KPA+ KL  L  +   L K+ L++ F+D GV++ +K 
Sbjct: 505 VVSAMIVKMNEAAEEDRQLNNQKKPALKKLTLLPTVVMHLKKQDLKETFIDSGVMSAIKE 564

Query: 320 WLEPLPDGSLPNINIRAAILKILTEFPIDLEQFDRREQLKKSGLGKVIMFLSKSDEETTS 379
           WL PLPD SLP + IR  +LKIL E P        +E LK SG+G+ +M+L K  +E+ S
Sbjct: 565 WLSPLPDRSLPALKIREELLKILQELP-----SVSQETLKHSGIGRAVMYLYKHPKESRS 619

Query: 380 NRKLAKDLVDKWSRPIFNKSTRFEDM 405
           N+ +A  L+++WSRPIF  ++ ++ M
Sbjct: 620 NKDMAGKLINEWSRPIFGLTSNYKGM 645

Rattus norvegicus (taxid: 10116)

>sp|Q96ST2|IWS1_HUMAN Protein IWS1 homolog OS=Homo sapiens GN=IWS1 PE=1 SV=2

 Score =  126 bits (316), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 60/146 (41%), Positives = 93/146 (63%), Gaps = 5/146 (3%)

Query: 260 LVENVMAELEVTAEEDAELNRQGKPAINKLKKLSLLTEVLSKKQLQQEFLDHGVLTLLKN 319
           +V  ++ ++   AEED +LN Q KPA+ KL  L  +   L K+ L++ F+D GV++ +K 
Sbjct: 559 VVSAMIVKMNEAAEEDRQLNNQKKPALKKLTLLPAVVMHLKKQDLKETFIDSGVMSAIKE 618

Query: 320 WLEPLPDGSLPNINIRAAILKILTEFPIDLEQFDRREQLKKSGLGKVIMFLSKSDEETTS 379
           WL PLPD SLP + IR  +LKIL E P        +E LK SG+G+ +M+L K  +E+ S
Sbjct: 619 WLSPLPDRSLPALKIREELLKILQELP-----SVSQETLKHSGIGRAVMYLYKHPKESRS 673

Query: 380 NRKLAKDLVDKWSRPIFNKSTRFEDM 405
           N+ +A  L+++WSRPIF  ++ ++ M
Sbjct: 674 NKDMAGKLINEWSRPIFGLTSNYKGM 699

Homo sapiens (taxid: 9606)

>sp|Q505H7|IWS1_XENTR Protein IWS1 homolog OS=Xenopus tropicalis GN=iws1 PE=2 SV=1

 Score =  121 bits (303), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 59/146 (40%), Positives = 91/146 (62%), Gaps = 5/146 (3%)

Query: 260 LVENVMAELEVTAEEDAELNRQGKPAINKLKKLSLLTEVLSKKQLQQEFLDHGVLTLLKN 319
           +V  ++ ++   AEED  LN   KPA+ KL  L  +   L K+ L++ F+D GV++ +K 
Sbjct: 649 VVNAMIMKMNEAAEEDRNLNSSKKPALKKLTLLPTVVMHLKKQDLKETFIDSGVMSAIKE 708

Query: 320 WLEPLPDGSLPNINIRAAILKILTEFPIDLEQFDRREQLKKSGLGKVIMFLSKSDEETTS 379
           WL PLPD SLP + IR  +LKIL E P  + Q    E LK SG+G+ +M+L K  +E+  
Sbjct: 709 WLTPLPDRSLPALKIREELLKILQELP-SVSQ----ETLKHSGIGRAVMYLYKHPKESRP 763

Query: 380 NRKLAKDLVDKWSRPIFNKSTRFEDM 405
           N+ +A  L+++WSRPIF  ++ ++ M
Sbjct: 764 NKDIAGKLINEWSRPIFGLTSNYKGM 789

Xenopus tropicalis (taxid: 8364)

>sp|Q6DE96|IWS1A_XENLA Protein IWS1 homolog A OS=Xenopus laevis GN=iws1-a PE=2 SV=1

 Score =  121 bits (303), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 60/146 (41%), Positives = 91/146 (62%), Gaps = 5/146 (3%)

Query: 260 LVENVMAELEVTAEEDAELNRQGKPAINKLKKLSLLTEVLSKKQLQQEFLDHGVLTLLKN 319
           +V  ++ ++   AEED  LN   KPA+ KL  L  +   L K+ L++ F+D GV++ +K 
Sbjct: 576 VVNAMIMKMTEAAEEDRNLNSSKKPALKKLTLLPTVVMHLKKQDLKETFIDSGVMSAIKE 635

Query: 320 WLEPLPDGSLPNINIRAAILKILTEFPIDLEQFDRREQLKKSGLGKVIMFLSKSDEETTS 379
           WL PLPD SLP + IR  +LKIL E P  + Q    E LK SG+G+ IM+L K  +E+  
Sbjct: 636 WLTPLPDRSLPALKIREELLKILQELP-SVSQ----ETLKHSGIGRAIMYLYKHPKESRP 690

Query: 380 NRKLAKDLVDKWSRPIFNKSTRFEDM 405
           N+ +A  L+++WSRPIF  ++ ++ M
Sbjct: 691 NKDIAGKLINEWSRPIFGLTSNYKGM 716

Xenopus laevis (taxid: 8355)

>sp|Q4P7X6|IWS1_USTMA Transcription factor IWS1 OS=Ustilago maydis (strain 521 / FGSC 9021) GN=IWS1 PE=3 SV=1

 Score =  109 bits (273), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 66/176 (37%), Positives = 96/176 (54%), Gaps = 11/176 (6%)

Query: 234 DEEIKELFKMGKKRKKNEKSPAE-IALLVENVMA----ELEVTAEEDAELNRQGKPAINK 288
           D  I E  + GKK+   +++  + + LL +  +A    E+   A++D E NR  KPA NK
Sbjct: 165 DRMIDEALRAGKKKAPRKRAGEDDLDLLADEEVAALRREMVTAADDDEEANRLKKPATNK 224

Query: 289 LKKLSLLTEVLSKKQLQQEFLDHGVLTLLKNWLEPLPDGSLPNINIRAAILKILTEFPID 348
           LK L  +   L K  LQQ  LD+ +L  +K WLEPLPD SLP +NI+    +IL    ID
Sbjct: 225 LKLLPKVVATLQKNHLQQSILDNNLLEGVKRWLEPLPDKSLPALNIQHQFFQILERMTID 284

Query: 349 LEQFDRREQLKKSGLGKVIMFLSKSDEETTSNRKLAKDLVDKWSRPIFNKSTRFED 404
                    LK SGLGKV++F S         ++ A+ L++ WSRP+  +S+ + D
Sbjct: 285 T------ISLKMSGLGKVVVFYSMCSRVEPKIKRSAEHLIEVWSRPVLKRSSSYRD 334

Transcription factor involved in RNA polymerase II transcription regulation. May function in both SPT15/TBP post-recruitment and recruitment steps of transcription.

Ustilago maydis (strain 521 / FGSC 9021) (taxid: 237631)

>sp|O42964|IWS1_SCHPO Transcription factor iws1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=iws1 PE=3 SV=1

 Score =  106 bits (265), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 54/138 (39%), Positives = 85/138 (61%), Gaps = 6/138 (4%)

Query: 267 ELEVTAEEDAELNRQGKPAINKLKKLSLLTEVLSKKQLQQEFLDHGVLTLLKNWLEPLPD 326
           ++ + A  DAELN +  PA  KLK L L+  VL K  L    LD+ VL  ++ WLEPLPD
Sbjct: 195 QMRLAALRDAELNSEQLPATEKLKMLPLVDAVLRKTHLYDTILDNNVLDSVRMWLEPLPD 254

Query: 327 GSLPNINIRAAILKILTEFPIDLEQFDRREQLKKSGLGKVIMFLSKSDEETTSNRKLAKD 386
            SLP +NI+ +++ ILT+ PI      + E L++S +G++++F + S +     +++A +
Sbjct: 255 RSLPALNIQRSLMDILTKLPI------QTEHLRESKIGRIVLFYTISKKPEPFIKRIADN 308

Query: 387 LVDKWSRPIFNKSTRFED 404
           LV +WSRPI  +S  + D
Sbjct: 309 LVSEWSRPIIKRSANYRD 326

Transcription factor involved in RNA polymerase II transcription regulation. May function in both SPT15/TBP post-recruitment and recruitment steps of transcription.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q4IJ11|IWS1_GIBZE Transcription factor IWS1 OS=Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN=IWS1 PE=3 SV=1

 Score = 97.4 bits (241), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 57/160 (35%), Positives = 95/160 (59%), Gaps = 10/160 (6%)

Query: 244 GKKRKKNEKS--PAEIALLVENVMAELEVTAEEDAELNRQGKPAINKLKKLSLLTEVLSK 301
           G+KRKK ++    AEI  L+ ++   +E   + D +    G+PA++KLK L  +T ++++
Sbjct: 169 GQKRKKKDEIDLEAEIDDLLADLKVRMEGACQSDNQAREAGQPALHKLKLLPEVTAIMNR 228

Query: 302 KQLQQEFL--DHGVLTLLKNWLEPLPDGSLPNINIRAAILKILTEFPIDLEQFDRREQLK 359
             +Q E L  D   L  +K +LEPL DGSLP  NI+  I   L +  I+      +E L 
Sbjct: 229 NNVQHEVLDPDTNFLQHVKFFLEPLNDGSLPAYNIQRDIFNALAKMNIE------KEALL 282

Query: 360 KSGLGKVIMFLSKSDEETTSNRKLAKDLVDKWSRPIFNKS 399
            SG+GKV++F ++S +   S +++A+ L+ +WSRPI N++
Sbjct: 283 SSGIGKVVVFYTRSKKPEPSIKRIAQRLLGEWSRPILNRT 322

Transcription factor involved in RNA polymerase II transcription regulation. May function in both SPT15/TBP post-recruitment and recruitment steps of transcription.

Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) (taxid: 229533)

>sp|Q61MR2|IWS1_CAEBR IWS1-like protein OS=Caenorhabditis briggsae GN=iws-1 PE=3 SV=3

 Score = 95.5 bits (236), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 47/146 (32%), Positives = 83/146 (56%), Gaps = 9/146 (6%)

Query: 260 LVENVMAELEVTAEEDAELNRQGKPAINKLKKLSLLTEVLSKKQLQQEFLDHGVLTLLKN 319
           +V  ++ +++  A+ D   N + KPA  K+K L  +  ++ +  + +  +++G ++ L  
Sbjct: 226 MVAKLVEKMKHAAKSDRNANVERKPAFQKIKMLPEVKAIMLRAGIVEVLIENGFMSALSE 285

Query: 320 WLEPLPDGSLPNINIRAAILKILTE---FPIDLEQFDRREQLKKSGLGKVIMFLSKSDEE 376
           WL PLPD  LP ++IR  +LK+L     + +D      R  LK+SGLGK +M L K   E
Sbjct: 286 WLAPLPDKCLPALDIRITVLKLLHNPRFWKLD------RSTLKQSGLGKAVMMLYKHPNE 339

Query: 377 TTSNRKLAKDLVDKWSRPIFNKSTRF 402
           T  N+ +A  L+ +W+RPI++  T +
Sbjct: 340 TKENKAIANKLIGEWARPIYHLDTDY 365

Caenorhabditis briggsae (taxid: 6238)

>sp|Q06505|IWS1_YEAST Transcription factor SPN1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SPN1 PE=1 SV=1

 Score = 95.1 bits (235), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 51/148 (34%), Positives = 84/148 (56%), Gaps = 7/148 (4%)

Query: 263 NVMAELEV-TAEEDAELNRQGKPAINKLKKLSLLTEVLSKKQLQQEFLDHGVLTLLKNWL 321
           N+ A+L++ T  +  E       A+ K+K L  +  VLSK  L    LD+ +L  ++ WL
Sbjct: 166 NIAAQLDIDTLNKRIETGDTSLIAMQKVKLLPKVVSVLSKANLADTILDNNLLQSVRIWL 225

Query: 322 EPLPDGSLPNINIRAAILKILTEFPIDLEQFDRREQLKKSGLGKVIMFLSKSDEETTSNR 381
           EPLPDGSLP+  I+ ++   L + P+      + E LK+SGLG+V++F +KS        
Sbjct: 226 EPLPDGSLPSFEIQKSLFAALNDLPV------KTEHLKESGLGRVVIFYTKSKRVEAQLA 279

Query: 382 KLAKDLVDKWSRPIFNKSTRFEDMKTVE 409
           +LA+ L+ +W+RPI   S  + D + ++
Sbjct: 280 RLAEKLIAEWTRPIIGASDNYRDKRIMQ 307

Transcription factor involved in RNA polymerase II transcription regulation. May function in both SPT15/TBP post-recruitment and recruitment steps of transcription.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	466
449436856	509	PREDICTED: IWS1-like protein-like [Cucum	0.894	0.819	0.698	1e-141
255557639	500	Transcription factor IWS1, putative [Ric	0.881	0.822	0.710	1e-139
357484843	496	IWS1-like protein [Medicago truncatula]	0.873	0.820	0.640	1e-133
356531459	508	PREDICTED: protein IWS1 homolog [Glycine	0.888	0.814	0.658	1e-132
79356327	502	Transcription elongation factor (TFIIS)	0.869	0.806	0.619	1e-132
334182984	493	Transcription elongation factor (TFIIS)	0.869	0.821	0.619	1e-132
297851642	503	hypothetical protein ARALYDRAFT_473395 [	0.864	0.801	0.611	1e-129
147865531	508	hypothetical protein VITISV_006539 [Viti	0.884	0.811	0.666	1e-128
356496120	499	PREDICTED: protein IWS1 homolog isoform	0.901	0.841	0.640	1e-128
356496118	508	PREDICTED: protein IWS1 homolog isoform	0.901	0.826	0.640	1e-128

>gi|449436856|ref|XP_004136208.1| PREDICTED: IWS1-like protein-like [Cucumis sativus] gi|449508046|ref|XP_004163201.1| PREDICTED: IWS1-like protein-like [Cucumis sativus]

 Score =  509 bits (1310), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 308/441 (69%), Positives = 348/441 (78%), Gaps = 24/441 (5%)

Query: 1   MAYDDDPYRDEDEEPLMDYDDIRSDPEQSPEHQQHQNDNVLDDFDDDDVGDGGVSPARER 60
           M Y+DDPYRDED EPLMD+D I+SD EQSPE   +  D +LD+    D+GD      R+R
Sbjct: 1   MGYEDDPYRDEDGEPLMDFDHIQSDGEQSPEP--YNPDELLDE----DIGDWA---GRQR 51

Query: 61  SQTPVYNNNEKSSKPRKRLVKKGAKESGSTPSLIDEREDEYDDEGEDNIIGDDFERE-IE 119
           SQTPVY+  E  ++PRKRLVKK     GS  S +D+  D+       +   D F RE  E
Sbjct: 52  SQTPVYDAEEPQARPRKRLVKKSLAGKGSVASNLDDDYDD-----ARDFTPDQFVREGSE 106

Query: 120 ERKRKKWGKEGGKDHNTKKRLKSGGDKKFSS-SGGKSSGFKSSRAG-SIRDNDKMLNEMW 177
           ERKRKK    G K+    KR K  GDKK  S SGGKS   K + +G  ++D D  + EMW
Sbjct: 107 ERKRKKGISSGKKE----KRFK--GDKKLGSGSGGKSRLPKKAFSGKGMKDQDGDVKEMW 160

Query: 178 NAVAPTGDSEDDQEGVRTLDDDNFIDDSGVDPSDRYGSDSEPRFAHDAPQAEEGDEDEEI 237
             +A  G S+DDQEG+RT+DDDNFIDDSGVDP+DRYGSD EPR    AP+AEEG+ED+EI
Sbjct: 161 ETIA-GGGSDDDQEGIRTVDDDNFIDDSGVDPADRYGSDDEPRSPRYAPEAEEGEEDDEI 219

Query: 238 KELFKMGKKRKKNEKSPAEIALLVENVMAELEVTAEEDAELNRQGKPAINKLKKLSLLTE 297
            ELFK+GKK+KKNEKSPAEIALLVENVMAELEVTAEEDA+LNRQGKPA+NKLKKL LLT+
Sbjct: 220 NELFKVGKKKKKNEKSPAEIALLVENVMAELEVTAEEDADLNRQGKPAVNKLKKLPLLTD 279

Query: 298 VLSKKQLQQEFLDHGVLTLLKNWLEPLPDGSLPNINIRAAILKILTEFPIDLEQFDRREQ 357
           VLSKKQLQQEFLDHGVLTLLKNWLEPLPDGSLPNINIR AILKILT+FPIDLEQ+DRREQ
Sbjct: 280 VLSKKQLQQEFLDHGVLTLLKNWLEPLPDGSLPNINIREAILKILTDFPIDLEQYDRREQ 339

Query: 358 LKKSGLGKVIMFLSKSDEETTSNRKLAKDLVDKWSRPIFNKSTRFEDMKTVEDDRVPFRR 417
           LKKSGLGKVIMFLSKSDEETTSNRKLAKDLVD+WSRPIFNKSTRFEDM+ VED+RVPFRR
Sbjct: 340 LKKSGLGKVIMFLSKSDEETTSNRKLAKDLVDQWSRPIFNKSTRFEDMRNVEDERVPFRR 399

Query: 418 PSAKKPASKAAAMESRDGDFD 438
           P AKK  +KAA MESRDGD D
Sbjct: 400 PLAKKSGNKAAGMESRDGDLD 420

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255557639|ref|XP_002519849.1| Transcription factor IWS1, putative [Ricinus communis] gi|223540895|gb|EEF42453.1| Transcription factor IWS1, putative [Ricinus communis]

 Score =  502 bits (1292), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 319/449 (71%), Positives = 351/449 (78%), Gaps = 38/449 (8%)

Query: 1   MAYDDDPYRDEDEEPLMDYDDIRSDPEQSPEHQQHQNDNVLDDFDDDDVGDGGVSPARER 60
           MAY+DDPYRDED EPLMDYDDI     QSPE QQ +      D  +DDV DG     RER
Sbjct: 1   MAYEDDPYRDEDGEPLMDYDDI-----QSPEPQQQE------DLLEDDV-DGWGEQERER 48

Query: 61  SQTPVYNNNEKSSKPRKRLVKK---GAKESGS--TPSLIDEREDEYDDEGEDNIIGDDFE 115
           SQTPVYNNN+K  KPRKRLVKK   G  E G    P L+DE  DE DDEG     G    
Sbjct: 49  SQTPVYNNNDKVEKPRKRLVKKSNSGIGEKGHFVVPELVDE--DEVDDEG----FG---- 98

Query: 116 REIEERKRKKWGKEGGKDHNTKKRLKSGGDKKFSSSGGKSSGFKSSRAGSIRDNDKMLNE 175
                RKRK +GK+    H   K+  S G+KK+SSSGGK       +    R  D  + E
Sbjct: 99  -----RKRKTFGKDF---HEKSKKKFSKGEKKYSSSGGKGGSSSKLKGKMARKEDGEVKE 150

Query: 176 MWNAVAPTGDSEDDQEGVRTLDDDNFIDDSGVDPSDRYGSDSEPRFAHDAPQAEEGDEDE 235
           MW+ +A  GDSEDD +GVRT+DDDNFIDDSGVDP+DRYGSD+EPR   DAPQAEEG+EDE
Sbjct: 151 MWDTIA-GGDSEDDHDGVRTMDDDNFIDDSGVDPADRYGSDNEPRSPTDAPQAEEGEEDE 209

Query: 236 EIKELFKMGKKRKKNEKSPAEIALLVENVMAELEVTAEEDAELNRQGKPAINKLKKLSLL 295
           EIKELFKMGKK+KKNEKSPAEIALLVENVMAELEVTAEEDAELNR+GKPAI KLKKL LL
Sbjct: 210 EIKELFKMGKKKKKNEKSPAEIALLVENVMAELEVTAEEDAELNRRGKPAITKLKKLPLL 269

Query: 296 TEVLSKKQLQQEFLDHGVLTLLKNWLEPLPDGSLPNINIRAAILKILTEFPIDLEQFDRR 355
           TEVLSKKQLQQEF+DHGVLTLLKNWLEPLPDGSLPNINIRAAILKILT+FPIDLEQ+DRR
Sbjct: 270 TEVLSKKQLQQEFIDHGVLTLLKNWLEPLPDGSLPNINIRAAILKILTDFPIDLEQYDRR 329

Query: 356 EQLKKSGLGKVIMFLSKSDEETTSNRKLAKDLVDKWSRPIFNKSTRFEDMKTVEDDRVPF 415
           EQLKKSGLGKVIMFLSKSDEETTSNRKLAKDLVDKWSRPIFNKSTRFEDM+ ++DDR  F
Sbjct: 330 EQLKKSGLGKVIMFLSKSDEETTSNRKLAKDLVDKWSRPIFNKSTRFEDMRNIDDDRA-F 388

Query: 416 RRPSAKKPASKAAAMESRDGDFDDLVISR 444
           RRP+ ++P + +A MESRDGD  DL ISR
Sbjct: 389 RRPTVRRPVNNSAGMESRDGDL-DLDISR 416

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357484843|ref|XP_003612709.1| IWS1-like protein [Medicago truncatula] gi|355514044|gb|AES95667.1| IWS1-like protein [Medicago truncatula]

 Score =  480 bits (1236), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 282/440 (64%), Positives = 328/440 (74%), Gaps = 33/440 (7%)

Query: 1   MAYDDDPYRDEDEEPLMDYDDIRSDPEQSPEHQQHQNDNVLDDFDDDDVGDGGVSPARER 60
           M Y+D+PYRDED EPLMDYDD++SD E SPE QQ      LDDF+++DV +      R R
Sbjct: 1   MGYEDNPYRDEDGEPLMDYDDVQSDGEGSPEPQQ------LDDFEEEDVDNFH---DRAR 51

Query: 61  SQTPVYNNNEKSSKPRKRLVKKG--AKESGSTPSLIDEREDEYDDEGEDNIIGDDFEREI 118
           SQTPVY N+   SKPRKRL+KK    K+S + PS +++  +E D+  +     D    + 
Sbjct: 52  SQTPVYENDSSKSKPRKRLIKKSDTGKQSMALPSELEDELEEEDEGRKRKKGKDGGSGKK 111

Query: 119 EERKRKKWGKEGGKDHNTKKRLKSGGDKKFSSSGGKSSGFKSSRAGSIRDNDKMLNEMWN 178
           E+R  K      GK  +     K G        GGKS    + R G +       NEMW+
Sbjct: 112 EKR-LKGGSSSSGKGGSRFGGSKRG-------VGGKSG---NDREGEV-------NEMWD 153

Query: 179 AVAPTGDSEDDQEGVRTLDDDNFIDDSGVDPSDRYGSDSEPRFAHDAPQAEEGDEDEEIK 238
           A+A  G+SEDD EG R +DDDNFIDD+GV+P+  YG D EPR   DAPQAEEG+ED+EIK
Sbjct: 154 ALA--GNSEDDNEGARNMDDDNFIDDTGVEPA-LYGYD-EPRSPGDAPQAEEGEEDDEIK 209

Query: 239 ELFKMGKKRKKNEKSPAEIALLVENVMAELEVTAEEDAELNRQGKPAINKLKKLSLLTEV 298
           +LFKMGKK+KKNE+SPAEIALLVENVMAELEVTAEEDAELNRQ KPA+NKLKKL LL EV
Sbjct: 210 DLFKMGKKKKKNERSPAEIALLVENVMAELEVTAEEDAELNRQHKPAVNKLKKLPLLIEV 269

Query: 299 LSKKQLQQEFLDHGVLTLLKNWLEPLPDGSLPNINIRAAILKILTEFPIDLEQFDRREQL 358
           LSKKQLQ EFLDHGVL LLK+WLEPLPDGSLPNINIR AILKIL + PIDLE +DRREQL
Sbjct: 270 LSKKQLQLEFLDHGVLNLLKSWLEPLPDGSLPNINIRTAILKILNDLPIDLEHYDRREQL 329

Query: 359 KKSGLGKVIMFLSKSDEETTSNRKLAKDLVDKWSRPIFNKSTRFEDMKTVEDDRVPFRRP 418
           K+SGLGKVIMFLS+SDEE   NR+LAKDLVDKWSRPIFNKSTRFEDM+  EDDRVP+RRP
Sbjct: 330 KRSGLGKVIMFLSRSDEEINVNRRLAKDLVDKWSRPIFNKSTRFEDMRNTEDDRVPYRRP 389

Query: 419 SAKKPASKAAAMESRDGDFD 438
           S KKPA+KAA M+SRDGD D
Sbjct: 390 SVKKPAAKAAGMQSRDGDLD 409

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356531459|ref|XP_003534295.1| PREDICTED: protein IWS1 homolog [Glycine max]

 Score =  479 bits (1233), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 293/445 (65%), Positives = 338/445 (75%), Gaps = 31/445 (6%)

Query: 1   MAYDDDPYRDEDEEPLMDYDDIRSDPEQSPEHQQHQNDNVLDDFDDD-DVGDGGVSPARE 59
           M Y+D+PYRDED EPLMDYDD++SD E SPE + HQ    LDDF++D D   G     R+
Sbjct: 1   MGYEDNPYRDEDGEPLMDYDDVQSDREPSPEPR-HQ----LDDFEEDVDEWRG-----RD 50

Query: 60  RSQTPVYNNNEKSSKPRKRLVKKG-AKESGSTPSLIDEREDEYDDEGEDNIIGDDFEREI 118
           RSQTPVY+ +   SKPRKRL+KK  A +    P L DE  + Y  EG    + D+ +   
Sbjct: 51  RSQTPVYDTDPSRSKPRKRLIKKSDAGKQAVEPELEDEDVEGYVPEG----VFDEGDAGR 106

Query: 119 EERKRKKWGKEGGKDHNTKKRLKSGGDKKFSSSGGKSSGFKSSRAGSIR-----DNDKML 173
           + +K K+     G     +KR+K  G+K F S G KS     S           D+D  +
Sbjct: 107 KRKKGKE-----GGSGKKEKRMK--GEKSFGSGGAKSGSKFGSGKKGFGGKAGKDHDGEV 159

Query: 174 NEMWNAVAPTGDSEDDQEGVRTLDDDNFIDDSGVDPSDRYGSDSEPRFAHDAPQAEEGDE 233
            EMW+ +A  GDSEDDQEG+R +DDDNFIDD+GV+P+  YGSD EPR   DAPQAEEG+E
Sbjct: 160 KEMWDTIA-GGDSEDDQEGLRNVDDDNFIDDTGVEPA-YYGSD-EPRSPGDAPQAEEGEE 216

Query: 234 DEEIKELFKMGKKRKKNEKSPAEIALLVENVMAELEVTAEEDAELNRQGKPAINKLKKLS 293
           DEEIK+LFK+GKK+KKNE+SPAEIA LVE VMAELEVTAEEDAELNRQGKPA+NKLKKL+
Sbjct: 217 DEEIKDLFKIGKKKKKNERSPAEIAYLVETVMAELEVTAEEDAELNRQGKPAVNKLKKLN 276

Query: 294 LLTEVLSKKQLQQEFLDHGVLTLLKNWLEPLPDGSLPNINIRAAILKILTEFPIDLEQFD 353
           LLTEVLSKKQLQ EFLDHGVLTLLKNWLEPLPDGSLPNINIR  +LKIL +FPIDLEQ+D
Sbjct: 277 LLTEVLSKKQLQLEFLDHGVLTLLKNWLEPLPDGSLPNINIRTEVLKILNDFPIDLEQYD 336

Query: 354 RREQLKKSGLGKVIMFLSKSDEETTSNRKLAKDLVDKWSRPIFNKSTRFEDMKTVEDDRV 413
           RREQLKKSGLGKVIMFLSKSDEE   NRKLAK+LVDKWSRPIFNKSTRFEDM+ VEDDRV
Sbjct: 337 RREQLKKSGLGKVIMFLSKSDEEINVNRKLAKELVDKWSRPIFNKSTRFEDMRNVEDDRV 396

Query: 414 PFRRPSAKKPASKAAAMESRDGDFD 438
           P+RRPS KKPA+KAA MESRD D D
Sbjct: 397 PYRRPSVKKPANKAAGMESRDSDLD 421

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|79356327|ref|NP_174492.2| Transcription elongation factor (TFIIS) family protein [Arabidopsis thaliana] gi|332193317|gb|AEE31438.1| Transcription elongation factor (TFIIS) family protein [Arabidopsis thaliana]

 Score =  477 bits (1227), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 274/442 (61%), Positives = 333/442 (75%), Gaps = 37/442 (8%)

Query: 1   MAYDDDPYRDEDEEPLMDYDDIRSDPEQSPEHQQHQNDNVLDDFDDDDVGDGGVSPARER 60
           M ++DDPYRD D EP++D+DD  +D E S E  Q  ++++ DD  D D G+G        
Sbjct: 1   MGFEDDPYRDVDGEPIVDFDDFGNDREPSTEPLQDFDEDLADDIGDWD-GEG-------- 51

Query: 61  SQTPVYNNNEKSSKPRKRLVKKGAKESGS--TPSLIDEREDEYDDEGEDNIIGDDFEREI 118
           SQTPVY+N+ K +KPRKRLVKK + E  +   P LIDE   + DD   D  +G       
Sbjct: 52  SQTPVYDND-KVAKPRKRLVKKSSSERVTIDVPELIDE---DVDDAEFDEFMG------- 100

Query: 119 EERKRKKWGKEGGK-DHNTKKRLKSGGDKKFSSSG-GKSSGFKSSRAGSIRDNDKMLNEM 176
                   G+ GG  D++ K   K   +K+ SSSG GK    K    G  +  +  ++EM
Sbjct: 101 --------GRGGGSTDYDDKVGRKRKKEKERSSSGSGKEKRHKFPNRGERKSEE--IDEM 150

Query: 177 WNAVAPTGDSEDDQEGVRTLDDDNFIDDSGVDPSDRYGSDSEPRFAHDAPQAEEGDEDEE 236
           W ++A   + E+D+EGVRT+DDDNFIDD+G+DPS+RYG D+  R     PQAEEG++++E
Sbjct: 151 WKSIA--HNPENDEEGVRTMDDDNFIDDTGLDPSERYGGDAGDRSPTHYPQAEEGEDEDE 208

Query: 237 IKELFKMGKKRKKNEKSPAEIALLVENVMAELEVTAEEDAELNRQGKPAINKLKKLSLLT 296
           +  LFKMGKK+KK E++PAEIALLVENVMAELEVTAEEDAELNRQGKPAINKLKKLSLLT
Sbjct: 209 VNNLFKMGKKKKKTERNPAEIALLVENVMAELEVTAEEDAELNRQGKPAINKLKKLSLLT 268

Query: 297 EVLSKKQLQQEFLDHGVLTLLKNWLEPLPDGSLPNINIRAAILKILTEFPIDLEQFDRRE 356
           +VL KKQLQ EFLDHGVLTLLKNWLEPLPDGSLPNINIRAAIL++LT+FPIDL+Q+DRRE
Sbjct: 269 DVLGKKQLQTEFLDHGVLTLLKNWLEPLPDGSLPNINIRAAILRVLTDFPIDLDQYDRRE 328

Query: 357 QLKKSGLGKVIMFLSKSDEETTSNRKLAKDLVDKWSRPIFNKSTRFEDMKTVEDDRVPFR 416
           QLKKSGLGKVIMFLSKSDEET SNR+LAKDLVDKWSRPIFNKSTRFEDM+ +++DRVP+R
Sbjct: 329 QLKKSGLGKVIMFLSKSDEETNSNRRLAKDLVDKWSRPIFNKSTRFEDMRNLDEDRVPYR 388

Query: 417 RPSAKKPASKAAAMESRDGDFD 438
           RP  KKP++K A MESRDGDFD
Sbjct: 389 RPPVKKPSNK-ATMESRDGDFD 409

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|334182984|ref|NP_001185126.1| Transcription elongation factor (TFIIS) family protein [Arabidopsis thaliana] gi|332193318|gb|AEE31439.1| Transcription elongation factor (TFIIS) family protein [Arabidopsis thaliana]

 Score =  476 bits (1226), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 274/442 (61%), Positives = 333/442 (75%), Gaps = 37/442 (8%)

Query: 1   MAYDDDPYRDEDEEPLMDYDDIRSDPEQSPEHQQHQNDNVLDDFDDDDVGDGGVSPARER 60
           M ++DDPYRD D EP++D+DD  +D E S E  Q  ++++ DD  D D G+G        
Sbjct: 1   MGFEDDPYRDVDGEPIVDFDDFGNDREPSTEPLQDFDEDLADDIGDWD-GEG-------- 51

Query: 61  SQTPVYNNNEKSSKPRKRLVKKGAKESGS--TPSLIDEREDEYDDEGEDNIIGDDFEREI 118
           SQTPVY+N+ K +KPRKRLVKK + E  +   P LIDE   + DD   D  +G       
Sbjct: 52  SQTPVYDND-KVAKPRKRLVKKSSSERVTIDVPELIDE---DVDDAEFDEFMG------- 100

Query: 119 EERKRKKWGKEGGK-DHNTKKRLKSGGDKKFSSSG-GKSSGFKSSRAGSIRDNDKMLNEM 176
                   G+ GG  D++ K   K   +K+ SSSG GK    K    G  +  +  ++EM
Sbjct: 101 --------GRGGGSTDYDDKVGRKRKKEKERSSSGSGKEKRHKFPNRGERKSEE--IDEM 150

Query: 177 WNAVAPTGDSEDDQEGVRTLDDDNFIDDSGVDPSDRYGSDSEPRFAHDAPQAEEGDEDEE 236
           W ++A   + E+D+EGVRT+DDDNFIDD+G+DPS+RYG D+  R     PQAEEG++++E
Sbjct: 151 WKSIA--HNPENDEEGVRTMDDDNFIDDTGLDPSERYGGDAGDRSPTHYPQAEEGEDEDE 208

Query: 237 IKELFKMGKKRKKNEKSPAEIALLVENVMAELEVTAEEDAELNRQGKPAINKLKKLSLLT 296
           +  LFKMGKK+KK E++PAEIALLVENVMAELEVTAEEDAELNRQGKPAINKLKKLSLLT
Sbjct: 209 VNNLFKMGKKKKKTERNPAEIALLVENVMAELEVTAEEDAELNRQGKPAINKLKKLSLLT 268

Query: 297 EVLSKKQLQQEFLDHGVLTLLKNWLEPLPDGSLPNINIRAAILKILTEFPIDLEQFDRRE 356
           +VL KKQLQ EFLDHGVLTLLKNWLEPLPDGSLPNINIRAAIL++LT+FPIDL+Q+DRRE
Sbjct: 269 DVLGKKQLQTEFLDHGVLTLLKNWLEPLPDGSLPNINIRAAILRVLTDFPIDLDQYDRRE 328

Query: 357 QLKKSGLGKVIMFLSKSDEETTSNRKLAKDLVDKWSRPIFNKSTRFEDMKTVEDDRVPFR 416
           QLKKSGLGKVIMFLSKSDEET SNR+LAKDLVDKWSRPIFNKSTRFEDM+ +++DRVP+R
Sbjct: 329 QLKKSGLGKVIMFLSKSDEETNSNRRLAKDLVDKWSRPIFNKSTRFEDMRNLDEDRVPYR 388

Query: 417 RPSAKKPASKAAAMESRDGDFD 438
           RP  KKP++K A MESRDGDFD
Sbjct: 389 RPPVKKPSNK-ATMESRDGDFD 409

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297851642|ref|XP_002893702.1| hypothetical protein ARALYDRAFT_473395 [Arabidopsis lyrata subsp. lyrata] gi|297339544|gb|EFH69961.1| hypothetical protein ARALYDRAFT_473395 [Arabidopsis lyrata subsp. lyrata]

 Score =  466 bits (1200), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 272/445 (61%), Positives = 334/445 (75%), Gaps = 42/445 (9%)

Query: 1   MAYDDDPYRDEDEEPLMDYDDIRSDPEQSPEHQQHQNDNVLDDFDDDDVGDGGVSPARER 60
           M ++DDPYRD D EP++D+DD  +D EQS E  Q  ++++ DD  D D G+G        
Sbjct: 1   MGFEDDPYRDVDGEPIVDFDDFENDREQSTEPLQDFDEDLADDIGDWD-GEG-------- 51

Query: 61  SQTPVYNNNEKSSKPRKRLVKKGA--KESGSTPSLIDE--REDEYDD--EGEDNIIGDDF 114
           SQTPVY+N+   +K RKRLVKK +  +E+   P LIDE   + E+D+   G     G D+
Sbjct: 52  SQTPVYDND-SVAKLRKRLVKKASSERETIEVPELIDEDVEDAEFDEFMGGRGGGGGTDY 110

Query: 115 EREIEERKRKKWGKEGGKDHNTKKRLKSGGDKKFSSSG-GKSSGFKSSRAGSIRDNDKML 173
           + ++  RKRKK                   +K+ SSSG GK    K    G  +  +  +
Sbjct: 111 DDKVG-RKRKK-------------------EKERSSSGSGKEKRHKFPNRGERKSEE--I 148

Query: 174 NEMWNAVAPTGDSEDDQEGVRTLDDDNFIDDSGVDPSDRYGSDSEPRFAHDAPQAEEGDE 233
           +EMW ++A   + E+D+EGVRT+DDDNFIDD+G+DPS+RYG D+  R     PQAEEG++
Sbjct: 149 DEMWKSIA--HNPENDEEGVRTMDDDNFIDDTGLDPSERYGGDAGDRSPTHYPQAEEGED 206

Query: 234 DEEIKELFKMGKKRKKNEKSPAEIALLVENVMAELEVTAEEDAELNRQGKPAINKLKKLS 293
           D+E+  LFKMGKK+KK E++PAEIAL VENVMAELEVTAEEDAELNR+GKPAINKLKKLS
Sbjct: 207 DDEVNNLFKMGKKKKKTERNPAEIALFVENVMAELEVTAEEDAELNRRGKPAINKLKKLS 266

Query: 294 LLTEVLSKKQLQQEFLDHGVLTLLKNWLEPLPDGSLPNINIRAAILKILTEFPIDLEQFD 353
           LLT+VL KKQLQ EFLDHGVLTLLKNWLEPLPDGSLPNINIRAAIL++LT+FPIDL+Q+D
Sbjct: 267 LLTDVLGKKQLQTEFLDHGVLTLLKNWLEPLPDGSLPNINIRAAILRVLTDFPIDLDQYD 326

Query: 354 RREQLKKSGLGKVIMFLSKSDEETTSNRKLAKDLVDKWSRPIFNKSTRFEDMKTVEDDRV 413
           RREQLKKSGLGKVIMFLSKSDEET SNR+LAKDLVDKWSRPIFNKSTRFEDM+ +++DRV
Sbjct: 327 RREQLKKSGLGKVIMFLSKSDEETNSNRRLAKDLVDKWSRPIFNKSTRFEDMRNLDEDRV 386

Query: 414 PFRRPSAKKPASKAAAMESRDGDFD 438
           P+RRP  KKP++K A MESRDGDFD
Sbjct: 387 PYRRPPVKKPSNK-ATMESRDGDFD 410

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147865531|emb|CAN83660.1| hypothetical protein VITISV_006539 [Vitis vinifera]

 Score =  466 bits (1198), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 290/435 (66%), Positives = 327/435 (75%), Gaps = 23/435 (5%)

Query: 1   MAYDDDPYRDEDEEPLMDYDDIRSDPEQSPEHQQHQNDNVLDDFDDDDVGDGGVSPARER 60
           M Y++DPYRDED EPLMD+D+++SD E   +    Q+D            +      RER
Sbjct: 1   MGYENDPYRDEDGEPLMDFDEVQSDREVEDQGHLLQDDIP--------DXNDDDWRRRER 52

Query: 61  SQTPVYNNNE--KSSKPRKRLVKKGAKESGSTPSLIDEREDEYDDEGEDNIIGDDFEREI 118
           S TPVY ++     SKPRKRLVKK AK S      IDE  D+     + ++  DDF R  
Sbjct: 53  SPTPVYGDDSGFSKSKPRKRLVKKSAKXSPLHYPGIDE--DDSPAAFQGDVDEDDFLR-- 108

Query: 119 EERKRKKWGKEGGKDHNTKKRLKSGGDKKFSSSGGKSSGFKSSRAGSIRDNDKMLNEMWN 178
              KRK    + G     KK      DK F S G K   F++     I+D D  + E+W+
Sbjct: 109 ---KRKDI--DSGSKRKEKKLRLEKKDKGFKS-GLKKGMFEA--VPRIQDGDAEVKELWD 160

Query: 179 AVAPTGDSEDDQEGVRTLDDDNFIDDSGVDPSDRYGSDSEPRFAHDAPQAEEGDEDEEIK 238
            +A  GDSEDD EG RT+DDDNFIDD+GVDP+DRYGSD E R   DAPQAEEG+EDEEIK
Sbjct: 161 TIA-GGDSEDDHEGPRTVDDDNFIDDTGVDPADRYGSDREARSPGDAPQAEEGEEDEEIK 219

Query: 239 ELFKMGKKRKKNEKSPAEIALLVENVMAELEVTAEEDAELNRQGKPAINKLKKLSLLTEV 298
           +LFKMGKK+KKNEKS AEIALLVENVMAELEVTAEEDAELNRQ KPAINKLKKL LLTEV
Sbjct: 220 QLFKMGKKKKKNEKSAAEIALLVENVMAELEVTAEEDAELNRQSKPAINKLKKLPLLTEV 279

Query: 299 LSKKQLQQEFLDHGVLTLLKNWLEPLPDGSLPNINIRAAILKILTEFPIDLEQFDRREQL 358
           LSKKQLQQEFLDHGVLTLLKNWLEPLPDGSLPNINIRAAIL+ILT+FPIDLEQ+DRREQL
Sbjct: 280 LSKKQLQQEFLDHGVLTLLKNWLEPLPDGSLPNINIRAAILRILTDFPIDLEQYDRREQL 339

Query: 359 KKSGLGKVIMFLSKSDEETTSNRKLAKDLVDKWSRPIFNKSTRFEDMKTVEDDRVPFRRP 418
           KKSGLGKVIMFLSKSDEETT+NRKLAKDLVDKWSRPIFNKSTRFEDM+  +D+RVPFRRP
Sbjct: 340 KKSGLGKVIMFLSKSDEETTANRKLAKDLVDKWSRPIFNKSTRFEDMRNFDDERVPFRRP 399

Query: 419 SAKKPASKAAAMESR 433
           SAKKP +KAA MESR
Sbjct: 400 SAKKPMNKAAGMESR 414

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356496120|ref|XP_003516918.1| PREDICTED: protein IWS1 homolog isoform 2 [Glycine max]

 Score =  465 bits (1197), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 281/439 (64%), Positives = 329/439 (74%), Gaps = 19/439 (4%)

Query: 1   MAYDDDPYRDEDEEPLMDYDDIRSDPEQSPEHQQHQNDNVLDDFDDDDVGDGGVSPARER 60
           M Y+D+PYRDED EPLMDYDDI+SD E SPE ++  +D            D      R+R
Sbjct: 1   MGYEDNPYRDEDGEPLMDYDDIQSDREPSPEPRRQDDDFD---------EDVDEWRGRDR 51

Query: 61  SQTPVYNNNEKSSKPRKRLVKKG-AKESGSTPSLIDEREDEYDDEGEDNIIGDDFEREIE 119
           SQTPVY+ +   SKPRKRL+KK  A +    P L DE  + Y  E     + D+ +   +
Sbjct: 52  SQTPVYDTDPSRSKPRKRLIKKSDAGKQAVEPELEDEDVEGYVPEA----MFDEADTGRK 107

Query: 120 ERKRKKWGKEGGKDHNTKKRLKSGGDKKFSSSGGKSSGFKSSRAGSIRDNDKMLNEMWNA 179
            +K K+ G    +     ++       K  S  G        +AG  +D+D  + EMW+ 
Sbjct: 108 RKKGKEGGSGKKEKRMKGEKSFGSSGGKSGSKFGSGKKGFGGKAG--KDHDGEVKEMWDT 165

Query: 180 VAPTGDSEDDQEGVRTLDDDNFIDDSGVDPSDRYGSDSEPRFAHDAPQAEEGDEDEEIKE 239
           +A  GDSEDDQEGVR +DDDNFIDD+GV+P+  YGSD EPR   DAPQAEEG+EDEEIK+
Sbjct: 166 IA-GGDSEDDQEGVRNVDDDNFIDDTGVEPA-YYGSD-EPRSPVDAPQAEEGEEDEEIKD 222

Query: 240 LFKMGKKRKKNEKSPAEIALLVENVMAELEVTAEEDAELNRQGKPAINKLKKLSLLTEVL 299
           LFK+GKK+KKNE+SPAEIA LVE VMAELEVTAEEDAELNRQGKPAINKLKKL+LLTEVL
Sbjct: 223 LFKIGKKKKKNERSPAEIAYLVETVMAELEVTAEEDAELNRQGKPAINKLKKLNLLTEVL 282

Query: 300 SKKQLQQEFLDHGVLTLLKNWLEPLPDGSLPNINIRAAILKILTEFPIDLEQFDRREQLK 359
           SKKQLQ EFLDHGVLTLLKNWLEPLPDGSLPNINIR+ +LKIL +FPIDLEQ+DRREQLK
Sbjct: 283 SKKQLQLEFLDHGVLTLLKNWLEPLPDGSLPNINIRSEVLKILNDFPIDLEQYDRREQLK 342

Query: 360 KSGLGKVIMFLSKSDEETTSNRKLAKDLVDKWSRPIFNKSTRFEDMKTVEDDRVPFRRPS 419
           KSGLGKVIMFLSKSDEE ++NRKLAK+LVDKWSRPIFNKSTRFEDM+ VEDDRVP+RRPS
Sbjct: 343 KSGLGKVIMFLSKSDEEISANRKLAKELVDKWSRPIFNKSTRFEDMRNVEDDRVPYRRPS 402

Query: 420 AKKPASKAAAMESRDGDFD 438
            KKPA+K+A MESRD D D
Sbjct: 403 VKKPANKSAGMESRDSDLD 421

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356496118|ref|XP_003516917.1| PREDICTED: protein IWS1 homolog isoform 1 [Glycine max]

 Score =  465 bits (1197), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 281/439 (64%), Positives = 329/439 (74%), Gaps = 19/439 (4%)

Query: 1   MAYDDDPYRDEDEEPLMDYDDIRSDPEQSPEHQQHQNDNVLDDFDDDDVGDGGVSPARER 60
           M Y+D+PYRDED EPLMDYDDI+SD E SPE ++  +D            D      R+R
Sbjct: 1   MGYEDNPYRDEDGEPLMDYDDIQSDREPSPEPRRQDDDFD---------EDVDEWRGRDR 51

Query: 61  SQTPVYNNNEKSSKPRKRLVKKG-AKESGSTPSLIDEREDEYDDEGEDNIIGDDFEREIE 119
           SQTPVY+ +   SKPRKRL+KK  A +    P L DE  + Y  E     + D+ +   +
Sbjct: 52  SQTPVYDTDPSRSKPRKRLIKKSDAGKQAVEPELEDEDVEGYVPEA----MFDEADTGRK 107

Query: 120 ERKRKKWGKEGGKDHNTKKRLKSGGDKKFSSSGGKSSGFKSSRAGSIRDNDKMLNEMWNA 179
            +K K+ G    +     ++       K  S  G        +AG  +D+D  + EMW+ 
Sbjct: 108 RKKGKEGGSGKKEKRMKGEKSFGSSGGKSGSKFGSGKKGFGGKAG--KDHDGEVKEMWDT 165

Query: 180 VAPTGDSEDDQEGVRTLDDDNFIDDSGVDPSDRYGSDSEPRFAHDAPQAEEGDEDEEIKE 239
           +A  GDSEDDQEGVR +DDDNFIDD+GV+P+  YGSD EPR   DAPQAEEG+EDEEIK+
Sbjct: 166 IA-GGDSEDDQEGVRNVDDDNFIDDTGVEPA-YYGSD-EPRSPVDAPQAEEGEEDEEIKD 222

Query: 240 LFKMGKKRKKNEKSPAEIALLVENVMAELEVTAEEDAELNRQGKPAINKLKKLSLLTEVL 299
           LFK+GKK+KKNE+SPAEIA LVE VMAELEVTAEEDAELNRQGKPAINKLKKL+LLTEVL
Sbjct: 223 LFKIGKKKKKNERSPAEIAYLVETVMAELEVTAEEDAELNRQGKPAINKLKKLNLLTEVL 282

Query: 300 SKKQLQQEFLDHGVLTLLKNWLEPLPDGSLPNINIRAAILKILTEFPIDLEQFDRREQLK 359
           SKKQLQ EFLDHGVLTLLKNWLEPLPDGSLPNINIR+ +LKIL +FPIDLEQ+DRREQLK
Sbjct: 283 SKKQLQLEFLDHGVLTLLKNWLEPLPDGSLPNINIRSEVLKILNDFPIDLEQYDRREQLK 342

Query: 360 KSGLGKVIMFLSKSDEETTSNRKLAKDLVDKWSRPIFNKSTRFEDMKTVEDDRVPFRRPS 419
           KSGLGKVIMFLSKSDEE ++NRKLAK+LVDKWSRPIFNKSTRFEDM+ VEDDRVP+RRPS
Sbjct: 343 KSGLGKVIMFLSKSDEEISANRKLAKELVDKWSRPIFNKSTRFEDMRNVEDDRVPYRRPS 402

Query: 420 AKKPASKAAAMESRDGDFD 438
            KKPA+K+A MESRD D D
Sbjct: 403 VKKPANKSAGMESRDSDLD 421

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	466
TAIR|locus:2031715	502	IWS1 [Arabidopsis thaliana (ta	0.564	0.523	0.744	4.4e-109
TAIR|locus:2117199	406	IWS2 [Arabidopsis thaliana (ta	0.366	0.421	0.678	3.3e-59
FB|FBgn0030738	820	CG9915 [Drosophila melanogaste	0.472	0.268	0.336	1e-28
UNIPROTKB|Q96ST2	819	IWS1 "Protein IWS1 homolog" [H	0.502	0.285	0.326	6.4e-28
UNIPROTKB|E2RCQ3	822	IWS1 "Uncharacterized protein"	0.502	0.284	0.326	1.7e-27
UNIPROTKB|J9PAW4	848	IWS1 "Uncharacterized protein"	0.502	0.275	0.326	1.8e-27
UNIPROTKB|E1BFW2	822	IWS1 "Uncharacterized protein"	0.502	0.284	0.322	3.6e-27
RGD|1304762	764	Iws1 "IWS1 homolog (S. cerevis	0.502	0.306	0.322	6.5e-27
UNIPROTKB|Q3SWT4	764	Iws1 "Protein IWS1 homolog" [R	0.502	0.306	0.322	6.5e-27
MGI|MGI:1920723	766	Iws1 "IWS1 homolog (S. cerevis	0.502	0.305	0.322	6.6e-27

TAIR|locus:2031715 IWS1 [Arabidopsis thaliana (taxid:3702)]

 Score = 1008 (359.9 bits), Expect = 4.4e-109, Sum P(2) = 4.4e-109
 Identities = 198/266 (74%), Positives = 225/266 (84%)

Query:   173 LNEMWNAVAPTGDSEDDQEGVRTLDDDNFIDDSGVDPSDRYGSDSEPRFAHDAPQAXXXX 232
             ++EMW ++A   + E+D+EGVRT+DDDNFIDD+G+DPS+RYG D+  R     PQA    
Sbjct:   147 IDEMWKSIAH--NPENDEEGVRTMDDDNFIDDTGLDPSERYGGDAGDRSPTHYPQAEEGE 204

Query:   233 XXXXXXXLFKMGKKRKKNEKSPAEIALLVENVMAELEVTAEEDAELNRQGKPAINKLKKL 292
                    LFKMGKK+KK E++PAEIALLVENVMAELEVTAEEDAELNRQGKPAINKLKKL
Sbjct:   205 DEDEVNNLFKMGKKKKKTERNPAEIALLVENVMAELEVTAEEDAELNRQGKPAINKLKKL 264

Query:   293 SLLTEVLSKKQLQQEFLDHGVLTLLKNWLEPLPDGSLPNINIRAAILKILTEFPIDLEQF 352
             SLLT+VL KKQLQ EFLDHGVLTLLKNWLEPLPDGSLPNINIRAAIL++LT+FPIDL+Q+
Sbjct:   265 SLLTDVLGKKQLQTEFLDHGVLTLLKNWLEPLPDGSLPNINIRAAILRVLTDFPIDLDQY 324

Query:   353 DRREQLKKSGLGKVIMFLSKSDEETTSNRKLAKDLVDKWSRPIFNKSTRFEDMKTVEDDR 412
             DRREQLKKSGLGKVIMFLSKSDEET SNR+LAKDLVDKWSRPIFNKSTRFEDM+ +++DR
Sbjct:   325 DRREQLKKSGLGKVIMFLSKSDEETNSNRRLAKDLVDKWSRPIFNKSTRFEDMRNLDEDR 384

Query:   413 VPFRRXXXXXXXXXXXXMESRDGDFD 438
             VP+RR            MESRDGDFD
Sbjct:   385 VPYRRPPVKKPSNKAT-MESRDGDFD 409

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0009742 "brassinosteroid mediated signaling pathway" evidence=IMP

GO:0032784 "regulation of DNA-dependent transcription, elongation" evidence=TAS

GO:0006487 "protein N-linked glycosylation" evidence=RCA

GO:0006623 "protein targeting to vacuole" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0016192 "vesicle-mediated transport" evidence=RCA

GO:0048193 "Golgi vesicle transport" evidence=RCA

TAIR|locus:2117199 IWS2 [Arabidopsis thaliana (taxid:3702)]

 Score = 588 (212.0 bits), Expect = 3.3e-59, Sum P(2) = 3.3e-59
 Identities = 116/171 (67%), Positives = 137/171 (80%)

Query:   240 LFKMGKKRKKNEKSPAEIALLVENVMAELEVTAEEDAELNRQGKPAINKLKKLSLLTEVL 299
             LF + KK+ K +K+  EI + VE VMA LE+  E+D   NR+GKPAINKL KL LL E L
Sbjct:   126 LFSLRKKKSKCDKTSMEIGMQVEQVMANLEIAVEDDVICNREGKPAINKLMKLPLLNETL 185

Query:   300 SKKQLQQEFLDHGVLTLLKNWLEPLPDGSLPNINIRAAILKILTEFPIDLEQFDRREQLK 359
             SKK LQ EFLDHGVL LLKNWLEPLPDGSLPNINIR+A+L IL +F IDL+Q  RREQL 
Sbjct:   186 SKKPLQGEFLDHGVLNLLKNWLEPLPDGSLPNINIRSAVLMILNDFRIDLDQDSRREQLI 245

Query:   360 KSGLGKVIMFLSKSDEETTSNRKLAKDLVDKWSRPIFNKSTRFEDMKTVED 410
             KSGLGKVIMFLSKSDEETT NR+LA D+++KW R I+NKSTR+++M T E+
Sbjct:   246 KSGLGKVIMFLSKSDEETTPNRRLANDIINKWGRIIYNKSTRYDNMFTQEE 296

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

FB|FBgn0030738 CG9915 [Drosophila melanogaster (taxid:7227)]

 Score = 316 (116.3 bits), Expect = 1.0e-28, Sum P(2) = 1.0e-28
 Identities = 81/241 (33%), Positives = 128/241 (53%)

Query:   185 DSEDD-----QEGVRTLDDDNFID--DSGVDPS---DRY--GSDSEPRFAHDAPQAXXXX 232
             +S+DD     ++ V+  D DN  D  D G+      D+    SD E     + P+     
Sbjct:   469 ESDDDGPKVTKKRVKITDTDNEEDEQDKGIGKEKSQDKITESSDDENTPISNEPENSNFI 528

Query:   233 XXXXXXXLFKMGKKRKKNEKSPAEIAL----LVENVMAELEVTAEEDAELNRQGKPAINK 288
                    + K  +KR +  K   ++      L++ ++  ++  +++D +LN  G+PA  K
Sbjct:   529 SDFDAMLMRKKEEKRVRRRKRDIDLINDNDDLIDQLIVSMKNASDDDRQLNMIGQPATKK 588

Query:   289 LKKLSLLTEVLSKKQLQQEFLDHGVLTLLKNWLEPLPDGSLPNINIRAAILKILTEFPID 348
             +  L  +   L KK LQ  FL+H +L +L +WL PLP+ SLP + IR +ILK+L++FP  
Sbjct:   589 ISMLKQVMSQLIKKHLQLAFLEHNILNVLTDWLAPLPNKSLPCLQIRESILKLLSDFPT- 647

Query:   349 LEQFDRREQLKKSGLGKVIMFLSKSDEETTSNRKLAKDLVDKWSRPIFNKSTRFEDMKTV 408
             +E    +  LK+SG+GK +M+L K  +ET SNR  A  L+ +W+RPIFN S  F  M   
Sbjct:   648 IE----KGLLKQSGIGKAVMYLYKHPQETKSNRDRAGRLISEWARPIFNVSCNFSAMSKE 703

Query:   409 E 409
             E
Sbjct:   704 E 704

GO:0005634 "nucleus" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

UNIPROTKB|Q96ST2 IWS1 "Protein IWS1 homolog" [Homo sapiens (taxid:9606)]

 Score = 322 (118.4 bits), Expect = 6.4e-28, P = 6.4e-28
 Identities = 80/245 (32%), Positives = 129/245 (52%)

Query:   174 NEMWNAVAPT-GDSEDDQEGVRT-LDDDNFIDDSG-VDPSDRYGSDSEPRFAHDAPQAXX 230
             NE  N +A   G+S D++E   T  + ++  ++ G     +   SDS+            
Sbjct:   467 NEEENLIADIFGESGDEEEEEFTGFNQEDLEEEKGETQVKEAEDSDSDDNIKRGKHMDFL 526

Query:   231 XXXXXXXXXLFKMGKKRKKNEKSPAEIAL---LVENVMAELEVTAEEDAELNRQGKPAIN 287
                         M  KR++N      I+    +V  ++ ++   AEED +LN Q KPA+ 
Sbjct:   527 SDFEMMLQRKKSMSGKRRRNRDGGTFISDADDVVSAMIVKMNEAAEEDRQLNNQKKPALK 586

Query:   288 KLKKLSLLTEVLSKKQLQQEFLDHGVLTLLKNWLEPLPDGSLPNINIRAAILKILTEFPI 347
             KL  L  +   L K+ L++ F+D GV++ +K WL PLPD SLP + IR  +LKIL E P 
Sbjct:   587 KLTLLPAVVMHLKKQDLKETFIDSGVMSAIKEWLSPLPDRSLPALKIREELLKILQELP- 645

Query:   348 DLEQFDRREQLKKSGLGKVIMFLSKSDEETTSNRKLAKDLVDKWSRPIFNKSTRFEDMKT 407
              + Q    E LK SG+G+ +M+L K  +E+ SN+ +A  L+++WSRPIF  ++ ++ M  
Sbjct:   646 SVSQ----ETLKHSGIGRAVMYLYKHPKESRSNKDMAGKLINEWSRPIFGLTSNYKGMTR 701

Query:   408 VEDDR 412
              E ++
Sbjct:   702 EEREQ 706

GO:0003677 "DNA binding" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|E2RCQ3 IWS1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 318 (117.0 bits), Expect = 1.7e-27, P = 1.7e-27
 Identities = 80/245 (32%), Positives = 129/245 (52%)

Query:   174 NEMWNAVAPT-GDSEDDQEGVRT-LDDDNFIDD-SGVDPSDRYGSDSEPRFAHDAPQAXX 230
             NE  N +A   G+S D++E   T  + ++  ++ S     +   SDS+            
Sbjct:   470 NEEENLIADIFGESGDEEEEEFTGFNQEDLEEEKSETQVKEAEDSDSDDNIKRGKHMDFL 529

Query:   231 XXXXXXXXXLFKMGKKRKKNEKSPAEIAL---LVENVMAELEVTAEEDAELNRQGKPAIN 287
                         M  KR++N      I+    +V  ++ ++   AEED +LN Q KPA+ 
Sbjct:   530 SDFEMMLQRKKSMSGKRRRNRDGGTFISDADDVVSAMIVKMNEAAEEDRQLNNQKKPALK 589

Query:   288 KLKKLSLLTEVLSKKQLQQEFLDHGVLTLLKNWLEPLPDGSLPNINIRAAILKILTEFPI 347
             KL  L  +   L K+ L++ F+D GV++ +K WL PLPD SLP + IR  +LKIL E P 
Sbjct:   590 KLTLLPTVVMHLKKQDLKETFIDSGVMSAIKEWLSPLPDRSLPALKIREELLKILQELP- 648

Query:   348 DLEQFDRREQLKKSGLGKVIMFLSKSDEETTSNRKLAKDLVDKWSRPIFNKSTRFEDMKT 407
              + Q    E LK SG+G+ +M+L K  +E+ SN+ +A  L+++WSRPIF  ++ ++ M  
Sbjct:   649 SVSQ----ETLKHSGIGRAVMYLYKHPKESRSNKDMAGKLINEWSRPIFGLTSNYKGMTR 704

Query:   408 VEDDR 412
              E ++
Sbjct:   705 EEREQ 709

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

UNIPROTKB|J9PAW4 IWS1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 318 (117.0 bits), Expect = 1.8e-27, P = 1.8e-27
 Identities = 80/245 (32%), Positives = 129/245 (52%)

Query:   174 NEMWNAVAPT-GDSEDDQEGVRT-LDDDNFIDD-SGVDPSDRYGSDSEPRFAHDAPQAXX 230
             NE  N +A   G+S D++E   T  + ++  ++ S     +   SDS+            
Sbjct:   496 NEEENLIADIFGESGDEEEEEFTGFNQEDLEEEKSETQVKEAEDSDSDDNIKRGKHMDFL 555

Query:   231 XXXXXXXXXLFKMGKKRKKNEKSPAEIAL---LVENVMAELEVTAEEDAELNRQGKPAIN 287
                         M  KR++N      I+    +V  ++ ++   AEED +LN Q KPA+ 
Sbjct:   556 SDFEMMLQRKKSMSGKRRRNRDGGTFISDADDVVSAMIVKMNEAAEEDRQLNNQKKPALK 615

Query:   288 KLKKLSLLTEVLSKKQLQQEFLDHGVLTLLKNWLEPLPDGSLPNINIRAAILKILTEFPI 347
             KL  L  +   L K+ L++ F+D GV++ +K WL PLPD SLP + IR  +LKIL E P 
Sbjct:   616 KLTLLPTVVMHLKKQDLKETFIDSGVMSAIKEWLSPLPDRSLPALKIREELLKILQELP- 674

Query:   348 DLEQFDRREQLKKSGLGKVIMFLSKSDEETTSNRKLAKDLVDKWSRPIFNKSTRFEDMKT 407
              + Q    E LK SG+G+ +M+L K  +E+ SN+ +A  L+++WSRPIF  ++ ++ M  
Sbjct:   675 SVSQ----ETLKHSGIGRAVMYLYKHPKESRSNKDMAGKLINEWSRPIFGLTSNYKGMTR 730

Query:   408 VEDDR 412
              E ++
Sbjct:   731 EEREQ 735

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

UNIPROTKB|E1BFW2 IWS1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 315 (115.9 bits), Expect = 3.6e-27, P = 3.6e-27
 Identities = 79/245 (32%), Positives = 129/245 (52%)

Query:   174 NEMWNAVAPT-GDSEDDQEGVRT-LDDDNFIDD-SGVDPSDRYGSDSEPRFAHDAPQAXX 230
             NE  N +A   G+S D++E   T  + ++  ++ S     +   SDS+            
Sbjct:   470 NEEENLIADIFGESGDEEEEEFTGFNQEDLEEEKSETQVKEAEDSDSDDNIKRGKHMDFL 529

Query:   231 XXXXXXXXXLFKMGKKRKKNEKSPAEIAL---LVENVMAELEVTAEEDAELNRQGKPAIN 287
                         M  KR++N      I+    +V  ++ ++   AEED +LN Q KPA+ 
Sbjct:   530 SDFEMMLQRKKSMSGKRRRNRDGGTFISDADDVVSAMIVKMNEAAEEDRQLNNQKKPALK 589

Query:   288 KLKKLSLLTEVLSKKQLQQEFLDHGVLTLLKNWLEPLPDGSLPNINIRAAILKILTEFPI 347
             KL  L  +   L K+ L++ F+D GV++ +K WL PLPD SLP + IR  +L+IL E P 
Sbjct:   590 KLTLLPTVVMHLKKQDLKETFIDSGVMSAIKEWLSPLPDRSLPALKIREELLRILQELP- 648

Query:   348 DLEQFDRREQLKKSGLGKVIMFLSKSDEETTSNRKLAKDLVDKWSRPIFNKSTRFEDMKT 407
              + Q    E LK SG+G+ +M+L K  +E+ SN+ +A  L+++WSRPIF  ++ ++ M  
Sbjct:   649 SVSQ----ETLKHSGIGRAVMYLYKHPKESRSNKDMAGKLINEWSRPIFGLTSNYKGMTR 704

Query:   408 VEDDR 412
              E ++
Sbjct:   705 EEREQ 709

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

RGD|1304762 Iws1 "IWS1 homolog (S. cerevisiae)" [Rattus norvegicus (taxid:10116)]

 Score = 312 (114.9 bits), Expect = 6.5e-27, P = 6.5e-27
 Identities = 79/245 (32%), Positives = 128/245 (52%)

Query:   174 NEMWNAVAPT-GDSEDDQEGVRT-LDDDNFIDDSG-VDPSDRYGSDSEPRFAHDAPQAXX 230
             NE  N +A   G+S D++E   T  + ++  ++       +   SDS+            
Sbjct:   413 NEEENLIADIFGESGDEEEEEFTGFNQEDLEEEKNETQLKEAEDSDSDDNIKRGKHMDFL 472

Query:   231 XXXXXXXXXLFKMGKKRKKNEKSPAEIAL---LVENVMAELEVTAEEDAELNRQGKPAIN 287
                         M  KR++N      I+    +V  ++ ++   AEED +LN Q KPA+ 
Sbjct:   473 SDFEMMLQRKKSMCGKRRRNRDGGTFISDADDVVSAMIVKMNEAAEEDRQLNNQKKPALK 532

Query:   288 KLKKLSLLTEVLSKKQLQQEFLDHGVLTLLKNWLEPLPDGSLPNINIRAAILKILTEFPI 347
             KL  L  +   L K+ L++ F+D GV++ +K WL PLPD SLP + IR  +LKIL E P 
Sbjct:   533 KLTLLPTVVMHLKKQDLKETFIDSGVMSAIKEWLSPLPDRSLPALKIREELLKILQELP- 591

Query:   348 DLEQFDRREQLKKSGLGKVIMFLSKSDEETTSNRKLAKDLVDKWSRPIFNKSTRFEDMKT 407
              + Q    E LK SG+G+ +M+L K  +E+ SN+ +A  L+++WSRPIF  ++ ++ M  
Sbjct:   592 SVSQ----ETLKHSGIGRAVMYLYKHPKESRSNKDMAGKLINEWSRPIFGLTSNYKGMTR 647

Query:   408 VEDDR 412
              E ++
Sbjct:   648 EEREQ 652

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

UNIPROTKB|Q3SWT4 Iws1 "Protein IWS1 homolog" [Rattus norvegicus (taxid:10116)]

 Score = 312 (114.9 bits), Expect = 6.5e-27, P = 6.5e-27
 Identities = 79/245 (32%), Positives = 128/245 (52%)

Query:   174 NEMWNAVAPT-GDSEDDQEGVRT-LDDDNFIDDSG-VDPSDRYGSDSEPRFAHDAPQAXX 230
             NE  N +A   G+S D++E   T  + ++  ++       +   SDS+            
Sbjct:   413 NEEENLIADIFGESGDEEEEEFTGFNQEDLEEEKNETQLKEAEDSDSDDNIKRGKHMDFL 472

Query:   231 XXXXXXXXXLFKMGKKRKKNEKSPAEIAL---LVENVMAELEVTAEEDAELNRQGKPAIN 287
                         M  KR++N      I+    +V  ++ ++   AEED +LN Q KPA+ 
Sbjct:   473 SDFEMMLQRKKSMCGKRRRNRDGGTFISDADDVVSAMIVKMNEAAEEDRQLNNQKKPALK 532

Query:   288 KLKKLSLLTEVLSKKQLQQEFLDHGVLTLLKNWLEPLPDGSLPNINIRAAILKILTEFPI 347
             KL  L  +   L K+ L++ F+D GV++ +K WL PLPD SLP + IR  +LKIL E P 
Sbjct:   533 KLTLLPTVVMHLKKQDLKETFIDSGVMSAIKEWLSPLPDRSLPALKIREELLKILQELP- 591

Query:   348 DLEQFDRREQLKKSGLGKVIMFLSKSDEETTSNRKLAKDLVDKWSRPIFNKSTRFEDMKT 407
              + Q    E LK SG+G+ +M+L K  +E+ SN+ +A  L+++WSRPIF  ++ ++ M  
Sbjct:   592 SVSQ----ETLKHSGIGRAVMYLYKHPKESRSNKDMAGKLINEWSRPIFGLTSNYKGMTR 647

Query:   408 VEDDR 412
              E ++
Sbjct:   648 EEREQ 652

GO:0003677 "DNA binding" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

MGI|MGI:1920723 Iws1 "IWS1 homolog (S. cerevisiae)" [Mus musculus (taxid:10090)]

 Score = 312 (114.9 bits), Expect = 6.6e-27, P = 6.6e-27
 Identities = 79/245 (32%), Positives = 128/245 (52%)

Query:   174 NEMWNAVAPT-GDSEDDQEGVRT-LDDDNFIDDSG-VDPSDRYGSDSEPRFAHDAPQAXX 230
             NE  N +A   G+S D++E   T  + ++  ++       +   SDS+            
Sbjct:   414 NEEENLIADIFGESGDEEEEEFTGFNQEDLEEEKNETQLKEAEDSDSDDNIKRGKHMDFL 473

Query:   231 XXXXXXXXXLFKMGKKRKKNEKSPAEIAL---LVENVMAELEVTAEEDAELNRQGKPAIN 287
                         M  KR++N      I+    +V  ++ ++   AEED +LN Q KPA+ 
Sbjct:   474 SDFEMMLQRKKSMCGKRRRNRDGGTFISDADDVVSAMIVKMNEAAEEDRQLNNQKKPALK 533

Query:   288 KLKKLSLLTEVLSKKQLQQEFLDHGVLTLLKNWLEPLPDGSLPNINIRAAILKILTEFPI 347
             KL  L  +   L K+ L++ F+D GV++ +K WL PLPD SLP + IR  +LKIL E P 
Sbjct:   534 KLTLLPTVVMHLKKQDLKETFIDSGVMSAIKEWLSPLPDRSLPALKIREELLKILQELP- 592

Query:   348 DLEQFDRREQLKKSGLGKVIMFLSKSDEETTSNRKLAKDLVDKWSRPIFNKSTRFEDMKT 407
              + Q    E LK SG+G+ +M+L K  +E+ SN+ +A  L+++WSRPIF  ++ ++ M  
Sbjct:   593 SVSQ----ETLKHSGIGRAVMYLYKHPKESRSNKDMAGKLINEWSRPIFGLTSNYKGMTR 648

Query:   408 VEDDR 412
              E ++
Sbjct:   649 EEREQ 653

GO:0003674 "molecular_function" evidence=ND

GO:0003677 "DNA binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	466
COG5139	397	COG5139, COG5139, Uncharacterized conserved protei	5e-27
pfam08711	51	pfam08711, Med26, TFIIS helical bundle-like domain	3e-11

>gnl|CDD|227468 COG5139, COG5139, Uncharacterized conserved protein [Function unknown]

 Score =  111 bits (279), Expect = 5e-27
 Identities = 60/184 (32%), Positives = 96/184 (52%), Gaps = 9/184 (4%)

Query: 224 DAPQAEEGDEDEEIKELFKMGKKRKKNEKSPAEIALLVENVMA---ELEVTAEEDAELNR 280
           D  +A+ G+  +      K     +   K       + E  +     ++  A++D   N 
Sbjct: 118 DFTEAQSGELGDTGDRQLKAPAASRARRKEDLLEQTVDEISLRLKKRMQDAAKKDNANNL 177

Query: 281 QGKPAINKLKKLSLLTEVLSKKQLQQEFLDHGVLTLLKNWLEPLPDGSLPNINIRAAILK 340
           +G+PA  K+K L  +++VL KK LQ   LD+ +L  ++ WLEPLPD SLPNI I+ ++L 
Sbjct: 178 EGRPATGKIKNLPEVSDVLMKKALQDTILDNNILDSVRGWLEPLPDKSLPNIKIQKSLLD 237

Query: 341 ILTEFPIDLEQFDRREQLKKSGLGKVIMFLSKSDEETTSNRKLAKDLVDKWSRPIFNKST 400
           +L   PI        E L +SG+G+++ F + S +E    R+ AK LV +W+RPI   S 
Sbjct: 238 VLKTLPI------HTEHLVESGVGRIVYFYTISKKEEKEVRRSAKALVQEWTRPIIKPSG 291

Query: 401 RFED 404
            + D
Sbjct: 292 NYRD 295

Length = 397

>gnl|CDD|204037 pfam08711, Med26, TFIIS helical bundle-like domain

 Score = 58.3 bits (142), Expect = 3e-11
 Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 8/58 (13%)

Query: 338 ILKILTEFPIDLEQFDRREQLKKSGLGKVIMFLSKSDEETTSNRKLAKDLVDKWSRPI 395
           +LK L + PI        E L+++G+GK +  L K + E    +KLAK L+ KW R +
Sbjct: 2   LLKELKKLPIT------EELLRETGIGKAVNKLRKHENE--EVKKLAKKLIKKWKRLV 51

Mediator is a large complex of up to 33 proteins that is conserved from plants to fungi to humans - the number and representation of individual subunits varying with species {1-2]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Mediator exists in two major forms in human cells: a smaller form that interacts strongly with pol II and activates transcription, and a large form that does not interact strongly with pol II and does not directly activate transcription. Notably, the 'small' and 'large' Mediator complexes differ in their subunit composition: the Med26 subunit preferentially associates with the small, active complex, whereas cdk8, cyclin C, Med12 and Med13 associate with the large Mediator complex. This family includesthe C terminal region of a number of eukaryotic hypothetical proteins which are homologous to the Saccharomyces cerevisiae protein IWS1. IWS1 is known to be an Pol II transcription elongation factor and interacts with Spt6 and Spt5. Length = 51

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	466
KOG1793	417	consensus Uncharacterized conserved protein [Funct	100.0
COG5139	397	Uncharacterized conserved protein [Function unknow	100.0
PF08711	53	Med26: TFIIS helical bundle-like domain; InterPro:	99.15
cd00183	76	TFIIS_I N-terminal domain (domain I) of transcript	98.45
smart00509	75	TFS2N Domain in the N-terminus of transcription el	97.95
TIGR01385	299	TFSII transcription elongation factor S-II. This m	97.08
KOG1105	296	consensus Transcription elongation factor TFIIS/Co	95.79
PLN02976	1713	amine oxidase	95.29

>KOG1793 consensus Uncharacterized conserved protein [Function unknown]

Probab=100.00  E-value=1.4e-57  Score=460.91  Aligned_cols=283  Identities=40%  Similarity=0.581  Sum_probs=230.1

Q ss_pred             hHHHHHHHhhCCCCCCCc---chhcccCccCC-----CCCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCcHHHHHHHhh
Q 012329          171 KMLNEMWNAVAPTGDSED---DQEGVRTLDDD-----NFIDDSGVDPSDRYGSDSEPRFAHDAPQAEEGDEDEEIKELFK  242 (466)
Q Consensus       171 ~~~~e~~~~i~~~~ds~d---~~e~~rt~~Dd-----~fiD~~G~d~~d~~g~d~e~r~~~d~~~aee~E~Ddei~~l~k  242 (466)
                      .+..++|+.+.  .+-++   ++.+.++..+.     +|+.++|.++-+-++.+.......++++++..|...++.++|+
T Consensus        64 e~~~~~~~~~~--~~~~r~~Kd~k~~~s~~~~e~~~~d~~~e~~~~~~e~~~~d~~d~~~~r~~~~~~~ed~~e~~~~~k  141 (417)
T KOG1793|consen   64 EPADEDENSNL--EDRKRERKDEKGLDSDGDNEKEHEDESQETGQEFPESQDDDFGDTGGRRPKLKAKLEDILEKKAVRK  141 (417)
T ss_pred             cccchhhcccc--cchhhhhccccccccccccchhhhHhhhccccccccccccccccccccchhhHhhhhhHHHHHHHHh
Confidence            36778888776  44333   44455555544     4999999887777666655556677788888899999999999


Q ss_pred             ccccccccCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCChHHHHHhhhHHHHHHHhhHhHHHHHHhhhhHHHHHHhh
Q 012329          243 MGKKRKKNEKSPAEIA-LLVENVMAELEVTAEEDAELNRQGKPAINKLKKLSLLTEVLSKKQLQQEFLDHGVLTLLKNWL  321 (466)
Q Consensus       243 ~~KKKKk~~~s~~Ei~-~iv~~Ll~~M~~AAeeD~eank~gkPAl~KLkmLpeV~~~L~K~~Lq~~fLD~GiL~vLk~WL  321 (466)
                      |++|++++...+.+|. .+|..|+.+|..||+.|+++|.+++||++||+|||.|.++|.|.+||.+|||||||+.|+.||
T Consensus       142 ~r~kk~~~d~~~~~I~d~~v~~l~~~m~~aa~~D~~~N~e~kPA~~Klk~Lp~v~~vL~k~~L~et~LDngvL~~lk~WL  221 (417)
T KOG1793|consen  142 MRTKKRKNDDGPEEILDDEVSRLMERMEDAAEKDRELNREGKPATQKLKLLPLVVAVLSKKALQETFLDNGVLDSLKEWL  221 (417)
T ss_pred             hhhhhccccCchHHHHHHHHHHHHHHHHHHHHHHHhhccccCchHHHHhccHHHHHHHhhhhHHHHHHhhhHHHHHHHHh
Confidence            8888889999999999 899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCCCCHHHHHHHHHHHhcCCCCccccchHHHHhhcCcccchhhhccCchhcHHHHHHHHHHHHHhhhhhhcCCcc
Q 012329          322 EPLPDGSLPNINIRAAILKILTEFPIDLEQFDRREQLKKSGLGKVIMFLSKSDEETTSNRKLAKDLVDKWSRPIFNKSTR  401 (466)
Q Consensus       322 ePLPDgSLPnl~IRt~LLkiL~~LPId~e~~d~rE~LK~SGLGKVVmfL~K~p~ET~eNKrlA~~LI~kWSRPI~~~ss~  401 (466)
                      +||||||||||+||.+||+||..|||.+     +|||++||||||||||++||+||++||+||..||++|+||||+++++
T Consensus       222 ePLPD~SLPal~Ir~~ll~iL~dlpi~~-----~E~Lk~SGlGkvVmflsks~ket~~nkrlA~kLI~eWsRpI~~~st~  296 (417)
T KOG1793|consen  222 EPLPDGSLPALNIRKSLLDILNDLPIDK-----REHLKESGLGKVVMFLSKSPKETKENKRLANKLINEWSRPIFKLSTN  296 (417)
T ss_pred             ccCCCCCCcchHHHHHHHHHHhcCCcch-----HHHHHhcCCCeEEEEEecCCccchHHHHHHHHHHHHhhccccCCCCC
Confidence            9999999999999999999999999976     58999999999999999999999999999999999999999999999


Q ss_pred             cccchhcccc----c-CCCCCCCCCCchhhhhhhhcccCCCCceeeecccccc-cceeeeeeccccCcc
Q 012329          402 FEDMKTVEDD----R-VPFRRPSAKKPASKAAAMESRDGDFDDLVISRYDLTI-DLIFLRILYCSSMSF  464 (466)
Q Consensus       402 Y~d~~~~e~~----~-~~~rr~~~kk~~~kaa~~~sR~~~ld~~~~~~~~~~~-~~~~~~~~~~~~~~~  464 (466)
                      |++|++..++    + +++||.....+.    .+..+.+++...|=..+..++ =.++-|||-.+.+-|
T Consensus       297 y~dm~~~~e~~de~r~~~~Rr~~~~~~~----~~~~~~~d~~~~i~~~e~g~~~gr~Ra~vP~~s~~Dy  361 (417)
T KOG1793|consen  297 YRDMRRMREERDEKRMPQSRRDSAKARK----KSGTDPRDRGSEIDTDEEGLTTGRARARVPAPSTKDY  361 (417)
T ss_pred             chhhHHHHhhhhhhhhhhhhcccccccc----ccCCCccccccccchhhhccccccccccCCCCCCCcc
Confidence            9999974111    1 223343332222    244455555544333322221 147778887777665

>COG5139 Uncharacterized conserved protein [Function unknown]

Probab=100.00  E-value=2.9e-42  Score=340.56  Aligned_cols=181  Identities=33%  Similarity=0.598  Sum_probs=164.6

Q ss_pred             CCCCcccCCCcHHHHHHHhhccccc---cccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHhhhHHHHHHH
Q 012329          223 HDAPQAEEGDEDEEIKELFKMGKKR---KKNEKSPAEIALLVENVMAELEVTAEEDAELNRQGKPAINKLKKLSLLTEVL  299 (466)
Q Consensus       223 ~d~~~aee~E~Ddei~~l~k~~KKK---Kk~~~s~~Ei~~iv~~Ll~~M~~AAeeD~eank~gkPAl~KLkmLpeV~~~L  299 (466)
                      .+.++|...|.++.++++++..+..   ++....++-+..++..|..+|..||..|+..|.++.||+.||+|||+|..+|
T Consensus       117 ~d~t~a~~~El~~~~dr~lK~p~~sr~rr~eD~leq~~de~~lrLk~~M~~aa~~D~~~n~e~~pAt~Kik~lp~V~~VL  196 (397)
T COG5139         117 QDFTEAQSGELGDTGDRQLKAPAASRARRKEDLLEQTVDEISLRLKKRMQDAAKKDNANNLEGRPATGKIKNLPEVSDVL  196 (397)
T ss_pred             CCCChhhhhhhhhhhhhhhccchhhhhhccccchHHHHHHHHHHHHHHHHHHHHhhhhhhhccCcchhhhhccHHHHHHH
Confidence            3466788899999999999933322   2333445667788999999999999999999999999999999999999999


Q ss_pred             hhHhHHHHHHhhhhHHHHHHhhccCCCCCCCCHHHHHHHHHHHhcCCCCccccchHHHHhhcCcccchhhhccCchhcHH
Q 012329          300 SKKQLQQEFLDHGVLTLLKNWLEPLPDGSLPNINIRAAILKILTEFPIDLEQFDRREQLKKSGLGKVIMFLSKSDEETTS  379 (466)
Q Consensus       300 ~K~~Lq~~fLD~GiL~vLk~WLePLPDgSLPnl~IRt~LLkiL~~LPId~e~~d~rE~LK~SGLGKVVmfL~K~p~ET~e  379 (466)
                      .|.+||.+|||+|||+.|+.||+||||+||||++||+.||.+|..|||.+      |||++||||+||+||+.+|++.++
T Consensus       197 ~k~~L~dtiLDnniLdsVr~WLEPLPD~SlP~~~IqksL~dvL~~lpI~t------EHL~eSgvGrIV~FYtiskk~e~~  270 (397)
T COG5139         197 MKKALQDTILDNNILDSVRGWLEPLPDKSLPNIKIQKSLLDVLKTLPIHT------EHLVESGVGRIVYFYTISKKEEKE  270 (397)
T ss_pred             HHHHHHHHHhhcchHHHHHhhhccCCCCCCcchHHHHHHHHHHhhCCchH------HHhhhcCCceEEEEEecCCcccHH
Confidence            99999999999999999999999999999999999999999999999987      699999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhhhhcCCcccccchhcc
Q 012329          380 NRKLAKDLVDKWSRPIFNKSTRFEDMKTVE  409 (466)
Q Consensus       380 NKrlA~~LI~kWSRPI~~~ss~Y~d~~~~e  409 (466)
                      ++++|+.||++|+||||+.+.+|+|.+.-.
T Consensus       271 v~r~A~~LV~eWtrpIik~s~nyRDk~i~~  300 (397)
T COG5139         271 VRRSAKALVQEWTRPIIKPSGNYRDKRIMQ  300 (397)
T ss_pred             HHHHHHHHHHHhhccccCcCCCcchhhhhe
Confidence            999999999999999999999999966443

>PF08711 Med26: TFIIS helical bundle-like domain; InterPro: IPR017923 Transcription factor IIS (TFIIS) is a transcription elongation factor that increases the overall transcription rate of RNA polymerase II by reactivating transcription elongation complexes that have arrested transcription

Probab=99.15  E-value=3.4e-11  Score=91.31  Aligned_cols=53  Identities=45%  Similarity=0.737  Sum_probs=47.3

Q ss_pred             HHHHHHhcCCCCccccchHHHHhhcCcccchhhhccCchhcHHHHHHHHHHHHHhhhhhh
Q 012329          337 AILKILTEFPIDLEQFDRREQLKKSGLGKVIMFLSKSDEETTSNRKLAKDLVDKWSRPIF  396 (466)
Q Consensus       337 ~LLkiL~~LPId~e~~d~rE~LK~SGLGKVVmfL~K~p~ET~eNKrlA~~LI~kWSRPI~  396 (466)
                      .+|+.|..|||+.      ++|++|+||++|.+|+|| .++++|+++|+.||.+|.++|+
T Consensus         1 ~iL~~L~~l~it~------~~L~~T~IGk~V~~l~k~-~~~~~i~~~A~~Li~~Wk~~v~   53 (53)
T PF08711_consen    1 EILKVLEKLPITV------ELLKSTGIGKAVNKLRKH-SENPEIRKLAKELIKKWKRIVD   53 (53)
T ss_dssp             HHHHHHHCSS-SH------HHHHHHSHHHHHHHHHHC-TS-HHHHHHHHHHHHHHHHHH-
T ss_pred             CHHHHhhcCCCCH------HHHHhCChhHHHHHHHcC-CCCHHHHHHHHHHHHHHhHhcC
Confidence            4899999999964      799999999999999999 9999999999999999999985

The three structural domains of TFIIS are conserved from yeast to human. The 80 or so N-terminal residues form a protein interaction domain containing a conserved motif, which has been called the LW motif because of the invariant leucine and tryptophan residues it contains. Although the N-terminal domain is not needed for transcriptional activity, a similar sequence has been identified in other transcription factors and proteins that are predominantly nuclear localized [, ]: MED26 (also known as CRSP70 and ARC70), a subunit of the Mediator complex, which is required for the activity of the enhancer-binding protein Sp1. Elongin A, a subunit of a transcription elongation factor previously known as SIII. It increases the rate of transcription by suppressing transient pausing of the elongation complex. PPP1R10, a nuclear regulatory subunit of protein phosphatase 1 that was previously known as p99, FB19 or PNUTS. PIBP, a small hypothetical protein that could be a phosphoinositide binding protein. IWS1, which is thought to function in both transcription initiation and elongation. The TFIIS N-terminal domain is a compact four-helix bundle. The hydrophobic core residues of helices 2, 3, and 4 are well conserved among TFIIS domains, although helix 1 is less conserved []. ; GO: 0003677 DNA binding, 0006351 transcription, DNA-dependent, 0005634 nucleus; PDB: 1EO0_A 3OAK_A 3NFQ_B 3O8Z_A 1WJT_A 2XPL_A 2XPO_A 2XPP_A 2XPN_A.

>cd00183 TFIIS_I N-terminal domain (domain I) of transcription elongation factor S-II (TFIIS); similar to a domain found in elongin A and CRSP70; likely to be involved in transcription; domain I from TFIIS interacts with RNA polymerase II holoenzyme

Probab=98.45  E-value=6.1e-07  Score=73.24  Aligned_cols=58  Identities=29%  Similarity=0.563  Sum_probs=53.7

Q ss_pred             CCHHHHHHHHHHHhcCCCCccccchHHHHhhcCcccchhhhccCchhcHHHHHHHHHHHHHhhhhh
Q 012329          330 PNINIRAAILKILTEFPIDLEQFDRREQLKKSGLGKVIMFLSKSDEETTSNRKLAKDLVDKWSRPI  395 (466)
Q Consensus       330 Pnl~IRt~LLkiL~~LPId~e~~d~rE~LK~SGLGKVVmfL~K~p~ET~eNKrlA~~LI~kWSRPI  395 (466)
                      |+...--.+|..|..+||+.      +.|+.++||++|.+|++|+.  +.++.+|..||.+|...|
T Consensus        18 ~~~~~~~~~L~~L~~~~it~------~~L~~T~iG~~V~~Lrkh~~--~~i~~~A~~Lv~~Wk~~v   75 (76)
T cd00183          18 EEVSRLLDLLRLLKKLPLTV------EILKETRIGKKVNSLRKHSN--EKIRKLAKALIKSWKKLV   75 (76)
T ss_pred             CCHHHHHHHHHHHhcCCCCH------HHHHHCCHHHHHHHHHcCCc--HHHHHHHHHHHHHHHHhc
Confidence            78888889999999999864      79999999999999999987  999999999999999876

>smart00509 TFS2N Domain in the N-terminus of transcription elongation factor S-II (and elsewhere)

Probab=97.95  E-value=1.1e-05  Score=66.07  Aligned_cols=58  Identities=31%  Similarity=0.558  Sum_probs=48.4

Q ss_pred             CHHHHHHHHHHHhcCCCCccccchHHHHhhcCcccchhhhccCchhcHHHHHHHHHHHHHhhhhhh
Q 012329          331 NINIRAAILKILTEFPIDLEQFDRREQLKKSGLGKVIMFLSKSDEETTSNRKLAKDLVDKWSRPIF  396 (466)
Q Consensus       331 nl~IRt~LLkiL~~LPId~e~~d~rE~LK~SGLGKVVmfL~K~p~ET~eNKrlA~~LI~kWSRPI~  396 (466)
                      +..-=-.+|+.|..||++.      +.|+.+.||++|..|++|+  .++++.+|..||..|...|.
T Consensus        17 ~~~~~l~~L~~L~~~~~t~------~~L~~T~iG~~v~~Lrkh~--~~~I~~~A~~Li~~WK~~v~   74 (75)
T smart00509       17 EVSRCLDILKKLKKLPITV------DLLEETRIGKKVNGLRKHK--NEEIRKLAKKLIKSWKKLVY   74 (75)
T ss_pred             CHHHHHHHHHHHhcCCCCH------HHHHHCcHHHHHHHHHcCC--cHHHHHHHHHHHHHHHHHhc
Confidence            3333346788888888854      7999999999999999996  59999999999999998763

>TIGR01385 TFSII transcription elongation factor S-II

Probab=97.08  E-value=0.00053  Score=69.51  Aligned_cols=53  Identities=30%  Similarity=0.485  Sum_probs=46.9

Q ss_pred             HHHHHHhcCCCCccccchHHHHhhcCcccchhhhccCchhcHHHHHHHHHHHHHhhhhhhc
Q 012329          337 AILKILTEFPIDLEQFDRREQLKKSGLGKVIMFLSKSDEETTSNRKLAKDLVDKWSRPIFN  397 (466)
Q Consensus       337 ~LLkiL~~LPId~e~~d~rE~LK~SGLGKVVmfL~K~p~ET~eNKrlA~~LI~kWSRPI~~  397 (466)
                      .+|+.|..|||+      .+.|+++.||++|..|+||+.  ++|+.+|+.||..|...|..
T Consensus        25 ~~L~~L~~~~~t------~~lL~~T~IG~~Vn~lrkh~~--~~I~~lAk~li~~WK~~v~~   77 (299)
T TIGR01385        25 DILHQLKEFPPT------EELLQETKVGVKVNKLRKHPN--EDISKLAKKIIKSWKKVVDK   77 (299)
T ss_pred             HHHHHHhcCCCc------HHHHhhCchhHHHHHHHcCCc--HHHHHHHHHHHHHHHHHHhh
Confidence            467888888885      479999999999999999975  57999999999999999986

This model represents eukaryotic transcription elongation factor S-II. This protein allows stalled RNA transcription complexes to perform a cleavage of the nascent RNA and restart at the newly generated 3-prime end.

>KOG1105 consensus Transcription elongation factor TFIIS/Cofactor of enhancer-binding protein Sp1 [Transcription]

Probab=95.79  E-value=0.018  Score=58.90  Aligned_cols=74  Identities=30%  Similarity=0.445  Sum_probs=60.4

Q ss_pred             hHHHHHHhhccCCCCCCCCHHHHHHHHHHHhcCCCCccccchHHHHhhcCcccchh-hhccCchhcHHHHHHHHHHHHHh
Q 012329          313 VLTLLKNWLEPLPDGSLPNINIRAAILKILTEFPIDLEQFDRREQLKKSGLGKVIM-FLSKSDEETTSNRKLAKDLVDKW  391 (466)
Q Consensus       313 iL~vLk~WLePLPDgSLPnl~IRt~LLkiL~~LPId~e~~d~rE~LK~SGLGKVVm-fL~K~p~ET~eNKrlA~~LI~kW  391 (466)
                      ++.+.+. |+-++..  +|+.---.+|+-|.++||..      ++|..+.||+.|. ++.+|+.+  +++.+|+.||..|
T Consensus         6 ~~r~ak~-l~~~~~~--~n~~~~ld~l~~L~~~pvt~------ell~~Tr~g~~vn~~~Kk~~n~--ev~~~ak~Lik~W   74 (296)
T KOG1105|consen    6 ALRAAKA-LEKDKQS--KNVEAALDLLKRLKKIPVTL------ELLQETRTGMGVNEVLKKHKNE--EVRSLAKKLIKSW   74 (296)
T ss_pred             HHHHHHH-HHhhccc--ccHHHHHHHHHHHHhcccHH------HHHHHhhHHHHHHHHHHhCCCH--HHHHHHHHHHHHH
Confidence            3444444 6666655  88777778899999999843      7999999999999 88888875  7889999999999


Q ss_pred             hhhhhc
Q 012329          392 SRPIFN  397 (466)
Q Consensus       392 SRPI~~  397 (466)
                      .+.|..
T Consensus        75 kk~~~~   80 (296)
T KOG1105|consen   75 KKLVDK   80 (296)
T ss_pred             HHHhhc
Confidence            999987

>PLN02976 amine oxidase

Probab=95.29  E-value=0.058  Score=65.12  Aligned_cols=86  Identities=21%  Similarity=0.288  Sum_probs=65.4

Q ss_pred             HhHHHHHHhhhhHHHHHHhhc--cCCCCCCCCHHHHHHHHHHHhcCCCCccccchHHHHhhcCcccchhhhccCchhcHH
Q 012329          302 KQLQQEFLDHGVLTLLKNWLE--PLPDGSLPNINIRAAILKILTEFPIDLEQFDRREQLKKSGLGKVIMFLSKSDEETTS  379 (466)
Q Consensus       302 ~~Lq~~fLD~GiL~vLk~WLe--PLPDgSLPnl~IRt~LLkiL~~LPId~e~~d~rE~LK~SGLGKVVmfL~K~p~ET~e  379 (466)
                      .+|..+-+....|..|..||.  --++|    -++-+.++.+|.-+|.+.      -.|+.|||||+|--=. |-...++
T Consensus      1272 ~~~~~~a~~~~gl~~l~~w~~~~~~~~~----~~l~~~~~~ll~~~~~d~------~a~r~sg~~~~~k~~~-~~h~~~~ 1340 (1713)
T PLN02976       1272 ETLKSFAGTKEGLATLNSWILDSMGKDG----TQLLRHCVRLLVLVSTDL------LAVRLSGIGKTVKEKV-CVHTSRD 1340 (1713)
T ss_pred             HHHHHHhcccchHHHHHHHHHHHhcccH----HHHHHHHHHHHhhcchhH------HHHHhccchHHHHhhh-hhcccHH
Confidence            455555566778999999998  33555    346688889998888765      4899999999994222 4457889


Q ss_pred             HHHHHHHHHHHhhhhhhcC
Q 012329          380 NRKLAKDLVDKWSRPIFNK  398 (466)
Q Consensus       380 NKrlA~~LI~kWSRPI~~~  398 (466)
                      ||.||.+|++.|+...-..
T Consensus      1341 ~r~~a~~~~~~w~~~~~~~ 1359 (1713)
T PLN02976       1341 IRAIASQLVSVWLEVFRRE 1359 (1713)
T ss_pred             HHHHHHHHHHHHHHHHHHh
Confidence            9999999999999765443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	466
2xpl_A	148	Crystal Structure Of Iws1(Spn1) Conserved Domain Fr		2e-19
2xpn_A	145	Crystal Structure Of A Spt6-Iws1(Spn1) Complex From		3e-19
3nfq_A	170	Crystal Structure Of The Conserved Central Domain O		2e-18
3o8z_A	152	Crystal Structure Of Spn1 (Iws1) Core Domain Length		2e-17
3oak_A	151	Crystal Structure Of A Spn1 (Iws1)-Spt6 Complex Len		6e-17

>pdb|2XPL|A Chain A, Crystal Structure Of Iws1(Spn1) Conserved Domain From Encephalitozoon Cuniculi Length = 148

Iteration: 1
 Score = 93.6 bits (231), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 47/118 (39%), Positives = 71/118 (60%), Gaps = 6/118 (5%)
Query: 279 NRQGKPAINKLKKLSLLTEVLSKKQLQQEFLDHGVLTLLKNWLEPLPDGSLPNINIRAAI 338
           N +G+PA  K++ +  ++++L  K LQ+  LD G+L  +K WLEPLPD S+PNI IR  +
Sbjct: 31  NLEGRPATGKIENVEEISDILMSKALQESLLDEGILDEIKGWLEPLPDKSMPNIKIRKRL 90
Query: 339 LKILTEFPIDLEQFDRREQLKKSGLGKVIMFLSKSDEETTSNRKLAKDLVDKWSRPIF 396
           L +L    I       +E L  SG+GK++ F S + +E+   R  AK LV KW+  +F
Sbjct: 91  LDVLKTMKI------HKEHLVTSGVGKIVYFYSINPKESKEVRASAKALVQKWTNEVF 142

>pdb|2XPN|A Chain A, Crystal Structure Of A Spt6-Iws1(Spn1) Complex From Encephalitozoon Cuniculi, Form I Length = 145

Iteration: 1
 Score = 93.2 bits (230), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 47/118 (39%), Positives = 71/118 (60%), Gaps = 6/118 (5%)
Query: 279 NRQGKPAINKLKKLSLLTEVLSKKQLQQEFLDHGVLTLLKNWLEPLPDGSLPNINIRAAI 338
           N +G+PA  K++ +  ++++L  K LQ+  LD G+L  +K WLEPLPD S+PNI IR  +
Sbjct: 28  NLEGRPATGKIENVEEISDILMSKALQESLLDEGILDEIKGWLEPLPDKSMPNIKIRKRL 87
Query: 339 LKILTEFPIDLEQFDRREQLKKSGLGKVIMFLSKSDEETTSNRKLAKDLVDKWSRPIF 396
           L +L    I       +E L  SG+GK++ F S + +E+   R  AK LV KW+  +F
Sbjct: 88  LDVLKTMKI------HKEHLVTSGVGKIVYFYSINPKESKEVRASAKALVQKWTNEVF 139

>pdb|3NFQ|A Chain A, Crystal Structure Of The Conserved Central Domain Of Yeast Spn1IWS1 Length = 170

Iteration: 1
 Score = 90.5 bits (223), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 51/143 (35%), Positives = 80/143 (55%), Gaps = 7/143 (4%)
Query: 263 NVMAELEV-TAEEDAELNRQGKPAINKLKKLSLLTEVLSKKQLQQEFLDHGVLTLLKNWL 321
           N+ A+L++ T  +  E       A  K+K L  +  VLSK  L    LD+ +L  ++ WL
Sbjct: 26  NIAAQLDIDTLNKRIETGDTSLIAXQKVKLLPKVVSVLSKANLADTILDNNLLQSVRIWL 85
Query: 322 EPLPDGSLPNINIRAAILKILTEFPIDLEQFDRREQLKKSGLGKVIMFLSKSDEETTSNR 381
           EPLPDGSLP+  I+ ++   L + P+      + E LK+SGLG+V++F +KS        
Sbjct: 86  EPLPDGSLPSFEIQKSLFAALNDLPV------KTEHLKESGLGRVVIFYTKSKRVEAQLA 139
Query: 382 KLAKDLVDKWSRPIFNKSTRFED 404
           +LA+ L+ +W+RPI   S  + D
Sbjct: 140 RLAEKLIAEWTRPIIGASDNYRD 162

>pdb|3O8Z|A Chain A, Crystal Structure Of Spn1 (Iws1) Core Domain Length = 152

Iteration: 1
 Score = 87.4 bits (215), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 49/136 (36%), Positives = 78/136 (57%), Gaps = 7/136 (5%)
Query: 263 NVMAELEV-TAEEDAELNRQGKPAINKLKKLSLLTEVLSKKQLQQEFLDHGVLTLLKNWL 321
           N+ A+L++ T  +  E       A+ K+K L  +  VLSK  L    LD+ +L  ++ WL
Sbjct: 23  NIAAQLDIDTLNKRIETGDTSLIAMQKVKLLPKVVSVLSKANLADTILDNNLLQSVRIWL 82
Query: 322 EPLPDGSLPNINIRAAILKILTEFPIDLEQFDRREQLKKSGLGKVIMFLSKSDEETTSNR 381
           EPLPDGSLP+  I+ ++   L + P+      + E LK+SGLG+V++F +KS        
Sbjct: 83  EPLPDGSLPSFEIQKSLFAALNDLPV------KTEHLKESGLGRVVIFYTKSKRVEAQLA 136
Query: 382 KLAKDLVDKWSRPIFN 397
           +LA+ L+ +W+RPI  
Sbjct: 137 RLAEKLIAEWTRPIIG 152

>pdb|3OAK|A Chain A, Crystal Structure Of A Spn1 (Iws1)-Spt6 Complex Length = 151

Iteration: 1
 Score = 85.5 bits (210), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 48/133 (36%), Positives = 77/133 (57%), Gaps = 7/133 (5%)
Query: 263 NVMAELEV-TAEEDAELNRQGKPAINKLKKLSLLTEVLSKKQLQQEFLDHGVLTLLKNWL 321
           N+ A+L++ T  +  E       A+ K+K L  +  VLSK  L    LD+ +L  ++ WL
Sbjct: 25  NIAAQLDIDTLNKRIETGDTSLIAMQKVKLLPKVVSVLSKANLADTILDNNLLQSVRIWL 84
Query: 322 EPLPDGSLPNINIRAAILKILTEFPIDLEQFDRREQLKKSGLGKVIMFLSKSDEETTSNR 381
           EPLPDGSLP+  I+ ++   L + P+      + E LK+SGLG+V++F +KS        
Sbjct: 85  EPLPDGSLPSFEIQKSLFAALNDLPV------KTEHLKESGLGRVVIFYTKSKRVEAQLA 138
Query: 382 KLAKDLVDKWSRP 394
           +LA+ L+ +W+RP
Sbjct: 139 RLAEKLIAEWTRP 151

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	466
2xpp_A	145	IWS1, ECU08_0440; transcription, elongation, histo	5e-45
3nfq_A	170	Transcription factor IWS1; SPN1, RNA polymerase II	1e-42
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-15

>2xpp_A IWS1, ECU08_0440; transcription, elongation, histone chaperone, RNA polymerase mRNA export; 1.74A {Encephalitozoon cuniculi} PDB: 2xpo_A 2xpn_A 2xpl_A Length = 145

 Score =  153 bits (387), Expect = 5e-45
 Identities = 49/148 (33%), Positives = 81/148 (54%), Gaps = 6/148 (4%)

Query: 253 SPAEIALLVENVMAELEVTAEEDAELNRQGKPAINKLKKLSLLTEVLSKKQLQQEFLDHG 312
            P  +  +  ++   ++   ++D   N +G+PA  K++ +  ++++L  K LQ+  LD G
Sbjct: 2   DPGTVLEISRSLKKRMQDILKKDNANNLEGRPATGKIENVEEISDILMSKALQESLLDEG 61

Query: 313 VLTLLKNWLEPLPDGSLPNINIRAAILKILTEFPIDLEQFDRREQLKKSGLGKVIMFLSK 372
           +L  +K WLEPLPD S+PNI IR  +L +L    I       +E L  SG+GK++ F S 
Sbjct: 62  ILDEIKGWLEPLPDKSMPNIKIRKRLLDVLKTMKIH------KEHLVTSGVGKIVYFYSI 115

Query: 373 SDEETTSNRKLAKDLVDKWSRPIFNKST 400
           + +E+   R  AK LV KW+  +F    
Sbjct: 116 NPKESKEVRASAKALVQKWTNEVFKPEG 143

>3nfq_A Transcription factor IWS1; SPN1, RNA polymerase II; 1.85A {Saccharomyces cerevisiae} PDB: 3o8z_A 3oak_A Length = 170

 Score =  147 bits (373), Expect = 1e-42
 Identities = 50/174 (28%), Positives = 88/174 (50%), Gaps = 13/174 (7%)

Query: 245 KKRKKNEKSPAEIALLVENVMAELEVTAEEDAELNR-------QGKPAINKLKKLSLLTE 297
           + R+  +     +   +  +  E+ + A+ D +              A+ K+K L  +  
Sbjct: 2   RTRRDEDDLEQYLDEKILRLKDEMNIAAQLDIDTLNKRIETGDTSLIAMQKVKLLPKVVS 61

Query: 298 VLSKKQLQQEFLDHGVLTLLKNWLEPLPDGSLPNINIRAAILKILTEFPIDLEQFDRREQ 357
           VLSK  L    LD+ +L  ++ WLEPLPDGSLP+  I+ ++   L + P+        E 
Sbjct: 62  VLSKANLADTILDNNLLQSVRIWLEPLPDGSLPSFEIQKSLFAALNDLPVK------TEH 115

Query: 358 LKKSGLGKVIMFLSKSDEETTSNRKLAKDLVDKWSRPIFNKSTRFEDMKTVEDD 411
           LK+SGLG+V++F +KS        +LA+ L+ +W+RPI   S  + D + ++ +
Sbjct: 116 LKESGLGRVVIFYTKSKRVEAQLARLAEKLIAEWTRPIIGASDNYRDKRIMQLE 169

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 76.4 bits (187), Expect = 6e-15
 Identities = 83/508 (16%), Positives = 142/508 (27%), Gaps = 152/508 (29%)

Query: 17  MDYDDIRSDPEQSPEHQQHQNDNVLDDFDDDDVGDGGVSPARERSQTPVYNNNE-----K 71
           MD++             Q+Q  ++L  F+D  V +      ++     + +  E      
Sbjct: 7   MDFE---------TGEHQYQYKDILSVFEDAFVDNFDCKDVQD-MPKSILSKEEIDHIIM 56

Query: 72  SSKPRKR-------LVKKGAKESGSTPSLIDEREDEYD-----DEGEDNIIGDDFEREIE 119
           S             L+ K   E      + +     Y       + E           IE
Sbjct: 57  SKDAVSGTLRLFWTLLSKQ--EEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIE 114

Query: 120 ERKRKKWGKEGGKDHNTK------------KRLKSGGDKKFSSSGGKSSGFKSSRAGSIR 167
           +R R     +    +N                L+    K     G   SG K+  A  + 
Sbjct: 115 QRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPA--KNVLIDGVLGSG-KTWVALDVC 171

Query: 168 DNDKMLNEM-----WNAVAPTGDSEDDQEGVRTLDDDNFIDDSGVDPSDRYGSDSEPRFA 222
            + K+  +M     W  +      E   E ++ L     ID +    SD   S +     
Sbjct: 172 LSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQ--IDPNWTSRSDH--SSNIKLRI 227

Query: 223 HDAPQAEEGDEDEEIKELFKMGKKRKKNEKSPAEIALLV-ENVMAELEVTAEEDAELNRQ 281
           H            E++ L K   K  +N        LLV  NV         ++A+    
Sbjct: 228 HSI--------QAELRRLLK--SKPYEN-------CLLVLLNV---------QNAKA--- 258

Query: 282 GKPAINKLK---KLSLLT-------EVLSKKQLQQEFLDHG--------VLTLLKNWLEP 323
                N      K+ LLT       + LS        LDH         V +LL  +L+ 
Sbjct: 259 ----WNAFNLSCKI-LLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLD- 312

Query: 324 LPDGSLPN---------INIRAAILKILTEFPIDLEQFDRREQLKKSGLGKVIMFLSKSD 374
                LP          ++I A  ++   +           +  K     K+   +  S 
Sbjct: 313 CRPQDLPREVLTTNPRRLSIIAESIR---DGL------ATWDNWKHVNCDKLTTIIESSL 363

Query: 375 E--ETTSNRKLAKDLVDKWSRPIFNKSTR---------FEDMKTVEDDRVPFRRPSAKKP 423
              E    RK+   L       +F  S           + D+   +   V        K 
Sbjct: 364 NVLEPAEYRKMFDRLS------VFPPSAHIPTILLSLIWFDVIKSDVMVV------VNKL 411

Query: 424 ASKAAAMESRDGDFDDLVISRYDLTIDL 451
              +      +    +  IS   + ++L
Sbjct: 412 HKYSLV----EKQPKESTISIPSIYLEL 435

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	466
2xpp_A	145	IWS1, ECU08_0440; transcription, elongation, histo	100.0
3nfq_A	170	Transcription factor IWS1; SPN1, RNA polymerase II	100.0
1wjt_A	103	Transcription elongation factor S-II protein 3; fo	97.79
1pqv_S	309	STP-alpha, transcription elongation factor S-II, D	97.38

>2xpp_A IWS1, ECU08_0440; transcription, elongation, histone chaperone, RNA polymerase mRNA export; 1.74A {Encephalitozoon cuniculi} PDB: 2xpo_A 2xpn_A 2xpl_A

Probab=100.00  E-value=2.3e-52  Score=375.92  Aligned_cols=144  Identities=34%  Similarity=0.637  Sum_probs=135.6

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHhhhHHHHHHHhhHhHHHHHHhhhhHHHHHHhhccCCCCCCCC
Q 012329          252 KSPAEIALLVENVMAELEVTAEEDAELNRQGKPAINKLKKLSLLTEVLSKKQLQQEFLDHGVLTLLKNWLEPLPDGSLPN  331 (466)
Q Consensus       252 ~s~~Ei~~iv~~Ll~~M~~AAeeD~eank~gkPAl~KLkmLpeV~~~L~K~~Lq~~fLD~GiL~vLk~WLePLPDgSLPn  331 (466)
                      ++++||.++|.+|+.+|..||++|.++|++++|||+||+|||+|+.+|+|.+||.+||++|+|++|+.||+|||||||||
T Consensus         1 ~~~~e~~~~~~~l~~~M~~Aa~~D~~a~~~~~PA~~KlklL~~V~~~l~k~~l~~~~ld~giL~~l~~WL~PLpDgsLP~   80 (145)
T 2xpp_A            1 MDPGTVLEISRSLKKRMQDILKKDNANNLEGRPATGKIENVEEISDILMSKALQESLLDEGILDEIKGWLEPLPDKSMPN   80 (145)
T ss_dssp             ---CHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHTCTTTHHHHHHTTHHHHHHHHHSCCTTSCCCC
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHhhHHHHHHHHhhHHHHHHHHHcCHHHHHHHHhCcCCCCCCCC
Confidence            47889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcCCCCccccchHHHHhhcCcccchhhhccCchhcHHHHHHHHHHHHHhhhhhhcCCcc
Q 012329          332 INIRAAILKILTEFPIDLEQFDRREQLKKSGLGKVIMFLSKSDEETTSNRKLAKDLVDKWSRPIFNKSTR  401 (466)
Q Consensus       332 l~IRt~LLkiL~~LPId~e~~d~rE~LK~SGLGKVVmfL~K~p~ET~eNKrlA~~LI~kWSRPI~~~ss~  401 (466)
                      ++||+.||++|.+|||++      +||++||||||||||++||+||++||++|++||++|+||||++|++
T Consensus        81 ~~Ir~~lL~~L~~lPI~~------e~Lk~SglGkvv~~l~k~~~et~~nk~la~~Li~~WsRpi~~~s~~  144 (145)
T 2xpp_A           81 IKIRKRLLDVLKTMKIHK------EHLVTSGVGKIVYFYSINPKESKEVRASAKALVQKWTNEVFKPEGG  144 (145)
T ss_dssp             HHHHHHHHHHHHTSCCCH------HHHHHHCHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHTC----
T ss_pred             HHHHHHHHHHHHHCCCCH------HHhhcCCCCcchhhhhcCCccCHHHHHHHHHHHHHHHHHHhCCCCC
Confidence            999999999999999974      7999999999999999999999999999999999999999999874

>3nfq_A Transcription factor IWS1; SPN1, RNA polymerase II; 1.85A {Saccharomyces cerevisiae} PDB: 3o8z_A 3oak_A

Probab=100.00  E-value=2.1e-51  Score=378.20  Aligned_cols=155  Identities=33%  Similarity=0.630  Sum_probs=131.4

Q ss_pred             ccccCCCH-HHHHHHHHHHHHHHHHHHHHHHHH-Hh------cCChHHHHHhhhHHHHHHHhhHhHHHHHHhhhhHHHHH
Q 012329          247 RKKNEKSP-AEIALLVENVMAELEVTAEEDAEL-NR------QGKPAINKLKKLSLLTEVLSKKQLQQEFLDHGVLTLLK  318 (466)
Q Consensus       247 KKk~~~s~-~Ei~~iv~~Ll~~M~~AAeeD~ea-nk------~gkPAl~KLkmLpeV~~~L~K~~Lq~~fLD~GiL~vLk  318 (466)
                      ||+.+.+. ...++.|.+|+.+|..||++|.++ |+      +++|||+||+|||+|+.+|+|.+||.+||++|+|++|+
T Consensus         3 ~~~~~~dl~~~~Dd~i~~L~~~M~~Aa~~D~~~~n~~~~~~~~~~PAl~KLkmL~~V~~~L~k~~L~~~~ld~giL~~l~   82 (170)
T 3nfq_A            3 TRRDEDDLEQYLDEKILRLKDEMNIAAQLDIDTLNKRIETGDTSLIAMQKVKLLPKVVSVLSKANLADTILDNNLLQSVR   82 (170)
T ss_dssp             -----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCCCCHHHHHHHHHHHHHTCGGGHHHHHHTTHHHHHH
T ss_pred             ccchhhhHHHhhhHHHHHHHHHHHHHHHHhHHHHHhhhccccccccHHHHHhhHHHHHHHHhHHHHHHHHHHcchHHHHH
Confidence            44455555 556679999999999999999875 43      57999999999999999999999999999999999999


Q ss_pred             HhhccCCCCCCCCHHHHHHHHHHHhcCCCCccccchHHHHhhcCcccchhhhccCchhcHHHHHHHHHHHHHhhhhhhcC
Q 012329          319 NWLEPLPDGSLPNINIRAAILKILTEFPIDLEQFDRREQLKKSGLGKVIMFLSKSDEETTSNRKLAKDLVDKWSRPIFNK  398 (466)
Q Consensus       319 ~WLePLPDgSLPnl~IRt~LLkiL~~LPId~e~~d~rE~LK~SGLGKVVmfL~K~p~ET~eNKrlA~~LI~kWSRPI~~~  398 (466)
                      .||+||||||||||+||+.||++|.+|||++      +||++||||||||||++||+||++||++|.+||++||||||++
T Consensus        83 ~WLePLpDgSLP~~~Ir~~lL~~L~~lPI~~------e~Lk~SglGkvV~~l~k~~~et~~nkrla~~Li~~WsRpI~~~  156 (170)
T 3nfq_A           83 IWLEPLPDGSLPSFEIQKSLFAALNDLPVKT------EHLKESGLGRVVIFYTKSKRVEAQLARLAEKLIAEWTRPIIGA  156 (170)
T ss_dssp             HHHSCCTTSCCCCHHHHHHHHHHHHTSCCCH------HHHHHHSHHHHHHHHHHCTTSCHHHHHHHHHHHHHHTCCCC--
T ss_pred             HHhCcCCCCCCCcHHHHHHHHHHHHHCCCCH------HHHhhCCCCceeeehhcCCcccHHHHHHHHHHHHHHHHHHhCc
Confidence            9999999999999999999999999999964      7999999999999999999999999999999999999999999


Q ss_pred             Ccccccchh
Q 012329          399 STRFEDMKT  407 (466)
Q Consensus       399 ss~Y~d~~~  407 (466)
                      |++|++++.
T Consensus       157 s~~y~~~~~  165 (170)
T 3nfq_A          157 SDNYRDKRI  165 (170)
T ss_dssp             ---------
T ss_pred             Ccchhhhhh
Confidence            999999665

>1wjt_A Transcription elongation factor S-II protein 3; four-helix bundle, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.48.3.1

Probab=97.79  E-value=1e-05  Score=69.14  Aligned_cols=54  Identities=22%  Similarity=0.346  Sum_probs=47.0

Q ss_pred             HHHHHHhcCCCCccccchHHHHhhcCcccchhhhccCchhcHHHHHHHHHHHHHhhhhhhc
Q 012329          337 AILKILTEFPIDLEQFDRREQLKKSGLGKVIMFLSKSDEETTSNRKLAKDLVDKWSRPIFN  397 (466)
Q Consensus       337 ~LLkiL~~LPId~e~~d~rE~LK~SGLGKVVmfL~K~p~ET~eNKrlA~~LI~kWSRPI~~  397 (466)
                      .+|+.|..|||+.      +.|++++||++|..|+|| ...++++.+|+.||.+|...|-.
T Consensus        35 ~~L~~L~~~~iT~------e~L~~T~IGk~Vn~LrKh-~~~~~V~~lAk~Lv~~WK~~v~~   88 (103)
T 1wjt_A           35 DLLKKLNSCQMSI------QLLQTTRIGVAVNGVRKH-CSDKEVVSLAKVLIKNWKRLLDS   88 (103)
T ss_dssp             HHHHHHHTSCCCH------HHHHHTCHHHHHHHHHHH-CCCSHHHHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHhCCCCCH------HHHHHcchhHHHHHHHcc-CCcHHHHHHHHHHHHHHHHHHHH
Confidence            5788889999854      799999999999999998 24568899999999999998865

>1pqv_S STP-alpha, transcription elongation factor S-II, DNA; mRNA cleavage, proofreading, BACKTRACKING, gene expression, multiprotein complex; 3.80A {Saccharomyces cerevisiae} SCOP: i.8.1.1 PDB: 1eo0_A

Probab=97.38  E-value=0.00012  Score=72.39  Aligned_cols=55  Identities=25%  Similarity=0.419  Sum_probs=45.7

Q ss_pred             HHHHHH-hcCCCCccccchHHHHhhcCcccchhhhccCchhcHHHHHHHHHHHHHhhhhhhcCC
Q 012329          337 AILKIL-TEFPIDLEQFDRREQLKKSGLGKVIMFLSKSDEETTSNRKLAKDLVDKWSRPIFNKS  399 (466)
Q Consensus       337 ~LLkiL-~~LPId~e~~d~rE~LK~SGLGKVVmfL~K~p~ET~eNKrlA~~LI~kWSRPI~~~s  399 (466)
                      .+|+.| ..+||+.      +.|++++||++|..|.||  ..++++.+|+.||.+|.+.|....
T Consensus        25 ~~L~~L~~~~~it~------~~L~~T~IG~~Vn~lrkh--~~~~v~~~Ak~Li~~WK~~v~~~~   80 (309)
T 1pqv_S           25 EILHVLDKEFVPTE------KLLRETKVGVEVNKFKKS--TNVEISKLVKKMISSWKDAINKNK   80 (309)
T ss_pred             HHHHHHHhcCCCCH------HHHHhCChhHHHHHHHcC--CCHHHHHHHHHHHHHHHHHHHHhc
Confidence            445555 5559854      799999999999999999  455899999999999999987653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	466
d1wjta_	103	Transcription elongation factor S-II protein 3 {Mo	97.93
d1eo0a_	77	Transcription elongation factor TFIIS N-domain {Ba	97.76

>d1wjta_ a.48.3.1 (A:) Transcription elongation factor S-II protein 3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: N-cbl like
superfamily: Conserved domain common to transcription factors TFIIS, elongin A, CRSP70
family: Conserved domain common to transcription factors TFIIS, elongin A, CRSP70
domain: Transcription elongation factor S-II protein 3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.93  E-value=2.4e-06  Score=70.85  Aligned_cols=72  Identities=21%  Similarity=0.302  Sum_probs=56.7

Q ss_pred             HHHHHHhhccC-CCCCCCCHHHHHHHHHHHhcCCCCccccchHHHHhhcCcccchhhhccCchhcHHHHHHHHHHHHHhh
Q 012329          314 LTLLKNWLEPL-PDGSLPNINIRAAILKILTEFPIDLEQFDRREQLKKSGLGKVIMFLSKSDEETTSNRKLAKDLVDKWS  392 (466)
Q Consensus       314 L~vLk~WLePL-PDgSLPnl~IRt~LLkiL~~LPId~e~~d~rE~LK~SGLGKVVmfL~K~p~ET~eNKrlA~~LI~kWS  392 (466)
                      +..|+.||+-+ .+.+.+.+   -.+|+.|..+||+.      ++|++++||++|.-|+||.. .++++.+|+.||.+|.
T Consensus        14 i~~i~k~L~~~~~~~~~~~v---l~~L~~L~~~~it~------e~L~~T~IGk~Vn~LrK~~~-~~~v~~lAk~Lv~~WK   83 (103)
T d1wjta_          14 LLRIAKKLEKMVSRKKTEGA---LDLLKKLNSCQMSI------QLLQTTRIGVAVNGVRKHCS-DKEVVSLAKVLIKNWK   83 (103)
T ss_dssp             HHHHHHHHHHHHHTTCCSSH---HHHHHHHHTSCCCH------HHHHHTCHHHHHHHHHHHCC-CSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCCHHHH---HHHHHHHHcCCCCH------HHHHhCCccHhHHHHHccCC-CHHHHHHHHHHHHHHH
Confidence            34466777643 45555543   37899999999964      79999999999999998642 2589999999999999


Q ss_pred             hhh
Q 012329          393 RPI  395 (466)
Q Consensus       393 RPI  395 (466)
                      ..|
T Consensus        84 ~~v   86 (103)
T d1wjta_          84 RLL   86 (103)
T ss_dssp             HHT
T ss_pred             HHH
Confidence            976

>d1eo0a_ a.48.3.1 (A:) Transcription elongation factor TFIIS N-domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: N-cbl like
superfamily: Conserved domain common to transcription factors TFIIS, elongin A, CRSP70
family: Conserved domain common to transcription factors TFIIS, elongin A, CRSP70
domain: Transcription elongation factor TFIIS N-domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.76  E-value=5.4e-06  Score=65.95  Aligned_cols=51  Identities=25%  Similarity=0.448  Sum_probs=43.6

Q ss_pred             HHHHHHhc-CCCCccccchHHHHhhcCcccchhhhccCchhcHHHHHHHHHHHHHhhhhh
Q 012329          337 AILKILTE-FPIDLEQFDRREQLKKSGLGKVIMFLSKSDEETTSNRKLAKDLVDKWSRPI  395 (466)
Q Consensus       337 ~LLkiL~~-LPId~e~~d~rE~LK~SGLGKVVmfL~K~p~ET~eNKrlA~~LI~kWSRPI  395 (466)
                      .+|+.|.. +||+.      +.|+.++||++|.-|++|+.  +++..+|+.||.+|..-|
T Consensus        25 ~~L~~L~~~~~it~------d~L~~T~iG~~Vn~LRkh~~--~~v~~lAk~Lv~~WK~~V   76 (77)
T d1eo0a_          25 EILHVLDKEFVPTE------KLLRETKVGVEVNKFKKSTN--VEISKLVKKMISSWKDAI   76 (77)
T ss_dssp             HHHHHHTTTCSCST------THHHHHHHHHHHHHCCSSSC--TTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCCcH------HHHHHCCccHHHHHHhcCCc--HHHHHHHHHHHHHHHHhc
Confidence            56888875 89865      68999999999999999975  578999999999998654